Query 008496
Match_columns 563
No_of_seqs 534 out of 3640
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 04:56:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008496.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008496hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyh_C Platelet-activating fac 100.0 8.4E-51 2.9E-55 415.1 43.4 297 208-562 101-410 (410)
2 1nr0_A Actin interacting prote 100.0 6.2E-46 2.1E-50 398.8 48.2 332 206-562 50-521 (611)
3 1r5m_A SIR4-interacting protei 100.0 4.4E-46 1.5E-50 381.2 43.6 337 212-562 42-424 (425)
4 1nr0_A Actin interacting prote 100.0 4.6E-45 1.6E-49 392.0 47.1 335 208-562 140-566 (611)
5 3ow8_A WD repeat-containing pr 100.0 5.1E-45 1.8E-49 359.5 43.2 289 209-521 26-320 (321)
6 1got_B GT-beta; complex (GTP-b 100.0 1.2E-44 4E-49 360.2 44.3 286 207-519 47-340 (340)
7 2ymu_A WD-40 repeat protein; u 100.0 3.3E-44 1.1E-48 383.2 50.7 325 204-560 251-577 (577)
8 2pbi_B Guanine nucleotide-bind 100.0 1.2E-44 4E-49 362.1 44.0 288 206-519 55-354 (354)
9 2ynn_A Coatomer subunit beta'; 100.0 1.5E-44 5E-49 353.6 43.0 290 208-562 6-301 (304)
10 3ow8_A WD repeat-containing pr 100.0 4.7E-44 1.6E-48 352.6 43.3 282 272-562 30-320 (321)
11 1got_B GT-beta; complex (GTP-b 100.0 1.6E-43 5.6E-48 351.9 44.9 280 272-560 53-340 (340)
12 3frx_A Guanine nucleotide-bind 100.0 2.2E-43 7.4E-48 347.8 45.3 289 209-562 11-316 (319)
13 4gqb_B Methylosome protein 50; 100.0 3.2E-44 1.1E-48 356.6 38.1 293 213-562 28-330 (344)
14 3iz6_a 40S ribosomal protein R 100.0 8E-45 2.8E-49 367.1 33.2 292 207-524 58-377 (380)
15 3fm0_A Protein CIAO1; WDR39,SG 100.0 2E-43 6.9E-48 352.0 42.0 299 208-529 8-342 (345)
16 2hes_X YDR267CP; beta-propelle 100.0 2.4E-43 8.3E-48 349.1 42.1 295 208-562 7-327 (330)
17 4g56_B MGC81050 protein; prote 100.0 4.9E-44 1.7E-48 357.9 36.7 288 212-562 39-342 (357)
18 2ymu_A WD-40 repeat protein; u 100.0 1.6E-42 5.6E-47 370.0 50.6 325 205-561 211-537 (577)
19 1gxr_A ESG1, transducin-like e 100.0 1.1E-41 3.7E-46 337.3 44.0 321 214-563 8-337 (337)
20 1erj_A Transcriptional repress 100.0 1.6E-41 5.5E-46 344.5 45.1 298 213-562 62-388 (393)
21 2pbi_B Guanine nucleotide-bind 100.0 2E-41 6.7E-46 338.7 44.3 280 272-560 62-354 (354)
22 2pm9_A Protein WEB1, protein t 100.0 3.6E-44 1.2E-48 366.5 24.7 323 216-562 13-413 (416)
23 2xzm_R RACK1; ribosome, transl 100.0 5.4E-42 1.9E-46 341.4 39.6 294 207-523 13-341 (343)
24 4aow_A Guanine nucleotide-bind 100.0 6E-41 2.1E-45 332.7 43.5 293 209-524 32-339 (340)
25 3iz6_a 40S ribosomal protein R 100.0 2.8E-42 9.5E-47 348.5 34.1 282 272-562 64-374 (380)
26 4ery_A WD repeat-containing pr 100.0 1.2E-40 3.9E-45 327.2 44.6 289 208-521 16-311 (312)
27 2ovr_B FBW7, F-BOX/WD repeat p 100.0 2.1E-40 7.1E-45 342.2 47.2 317 208-562 111-441 (445)
28 3fm0_A Protein CIAO1; WDR39,SG 100.0 2.6E-40 9.1E-45 329.4 41.4 278 276-562 18-334 (345)
29 3dm0_A Maltose-binding peripla 100.0 2.1E-40 7E-45 361.6 43.4 293 209-562 376-692 (694)
30 1pgu_A Actin interacting prote 100.0 6.1E-40 2.1E-44 352.5 46.1 328 207-563 152-614 (615)
31 4ery_A WD repeat-containing pr 100.0 4.1E-39 1.4E-43 316.1 45.4 282 272-562 21-311 (312)
32 3zwl_B Eukaryotic translation 100.0 2.5E-39 8.5E-44 324.4 44.7 297 208-562 25-345 (369)
33 2xzm_R RACK1; ribosome, transl 100.0 1.1E-39 3.7E-44 324.8 40.1 279 272-562 19-339 (343)
34 3vl1_A 26S proteasome regulato 100.0 2E-40 6.7E-45 339.4 34.7 319 217-562 58-418 (420)
35 2oaj_A Protein SNI1; WD40 repe 100.0 2.9E-40 1E-44 367.8 38.4 332 210-562 12-518 (902)
36 3ei3_B DNA damage-binding prot 100.0 6E-40 2.1E-44 331.7 36.6 285 208-562 66-381 (383)
37 1pgu_A Actin interacting prote 100.0 4.1E-39 1.4E-43 346.1 45.3 345 206-562 54-571 (615)
38 3v7d_B Cell division control p 100.0 6.9E-39 2.3E-43 332.6 44.6 317 208-559 114-459 (464)
39 3mkq_A Coatomer beta'-subunit; 100.0 3E-39 1E-43 359.1 44.3 327 208-562 6-385 (814)
40 1sq9_A Antiviral protein SKI8; 100.0 1.2E-39 4.2E-44 330.8 36.9 295 208-524 9-397 (397)
41 4gqb_B Methylosome protein 50; 100.0 1.7E-39 5.9E-44 322.6 36.8 253 212-526 79-335 (344)
42 3sfz_A APAF-1, apoptotic pepti 100.0 1.5E-38 5.2E-43 369.4 47.6 336 208-562 608-1073(1249)
43 3k26_A Polycomb protein EED; W 100.0 1.8E-39 6E-44 325.3 33.3 293 209-562 12-365 (366)
44 2oaj_A Protein SNI1; WD40 repe 100.0 6.7E-39 2.3E-43 356.9 41.4 332 209-561 93-659 (902)
45 3odt_A Protein DOA1; ubiquitin 100.0 1.9E-38 6.6E-43 310.7 38.5 287 207-529 10-303 (313)
46 3sfz_A APAF-1, apoptotic pepti 100.0 2.9E-40 1E-44 383.8 29.7 342 208-561 875-1247(1249)
47 2pm7_B Protein transport prote 100.0 1.2E-38 4.2E-43 310.4 36.1 254 208-521 2-284 (297)
48 2j04_B YDR362CP, TAU91; beta p 100.0 1.7E-40 5.9E-45 346.5 24.3 310 227-563 173-517 (524)
49 4aow_A Guanine nucleotide-bind 100.0 2.4E-37 8.4E-42 306.7 45.7 281 271-562 35-336 (340)
50 1sq9_A Antiviral protein SKI8; 100.0 2.6E-38 8.9E-43 321.0 39.5 280 271-562 13-394 (397)
51 1k8k_C P40, ARP2/3 complex 41 100.0 1.1E-38 3.8E-43 320.6 36.3 291 210-562 3-360 (372)
52 3i2n_A WD repeat-containing pr 100.0 9.8E-39 3.3E-43 318.9 33.7 292 209-525 12-356 (357)
53 1gxr_A ESG1, transducin-like e 100.0 3.6E-37 1.2E-41 304.8 44.2 285 211-520 47-335 (337)
54 4a11_B DNA excision repair pro 100.0 2.1E-37 7.3E-42 315.0 41.7 342 207-562 35-404 (408)
55 2ynn_A Coatomer subunit beta'; 100.0 9.1E-38 3.1E-42 305.4 37.1 249 306-562 4-258 (304)
56 1vyh_C Platelet-activating fac 100.0 4.8E-38 1.6E-42 320.7 36.3 246 308-562 101-368 (410)
57 3dw8_B Serine/threonine-protei 100.0 1.9E-38 6.5E-43 327.4 33.5 301 214-562 27-445 (447)
58 3frx_A Guanine nucleotide-bind 100.0 1.9E-37 6.5E-42 305.3 38.7 246 271-562 14-266 (319)
59 4e54_B DNA damage-binding prot 100.0 1E-38 3.5E-43 328.5 30.4 301 209-526 113-434 (435)
60 4g56_B MGC81050 protein; prote 100.0 5E-38 1.7E-42 314.3 33.0 252 210-523 89-344 (357)
61 3odt_A Protein DOA1; ubiquitin 100.0 8.3E-37 2.8E-41 299.0 40.9 273 272-562 16-295 (313)
62 2pm7_B Protein transport prote 100.0 1.7E-37 5.7E-42 302.4 35.6 252 272-562 7-284 (297)
63 3dwl_C Actin-related protein 2 100.0 3E-39 1E-43 325.7 23.0 288 210-561 6-377 (377)
64 3gre_A Serine/threonine-protei 100.0 7.1E-38 2.4E-42 322.4 31.3 310 222-560 34-437 (437)
65 3bg1_A Protein SEC13 homolog; 100.0 4E-38 1.4E-42 309.7 27.7 255 209-521 7-292 (316)
66 2hes_X YDR267CP; beta-propelle 100.0 3.9E-37 1.3E-41 304.5 34.4 251 213-522 56-328 (330)
67 4h5i_A Guanine nucleotide-exch 100.0 5.3E-38 1.8E-42 315.1 27.6 289 216-523 15-344 (365)
68 1yfq_A Cell cycle arrest prote 100.0 4.9E-37 1.7E-41 304.9 34.0 282 210-519 6-321 (342)
69 3mkq_A Coatomer beta'-subunit; 100.0 1.1E-36 3.8E-41 338.4 40.8 324 207-560 47-420 (814)
70 4aez_A CDC20, WD repeat-contai 100.0 1.2E-36 4.1E-41 309.6 36.8 275 276-562 95-379 (401)
71 3f3f_A Nucleoporin SEH1; struc 100.0 6.7E-37 2.3E-41 303.7 33.9 303 209-529 5-344 (351)
72 2pm9_A Protein WEB1, protein t 100.0 7.1E-38 2.4E-42 319.8 27.4 279 276-562 14-336 (416)
73 3gre_A Serine/threonine-protei 100.0 3.8E-37 1.3E-41 316.9 30.5 289 206-519 53-437 (437)
74 4gga_A P55CDC, cell division c 100.0 1.2E-35 4.2E-40 304.0 41.4 275 276-562 107-394 (420)
75 3i2n_A WD repeat-containing pr 100.0 1.7E-36 6E-41 302.6 33.6 280 273-562 17-352 (357)
76 3mmy_A MRNA export factor; mRN 100.0 3E-36 1E-40 301.9 35.4 292 204-521 28-345 (368)
77 4aez_A CDC20, WD repeat-contai 100.0 6.2E-36 2.1E-40 304.3 38.2 292 208-529 84-387 (401)
78 1r5m_A SIR4-interacting protei 100.0 2.9E-36 1E-40 308.1 35.9 277 274-562 45-360 (425)
79 1erj_A Transcriptional repress 100.0 5.6E-36 1.9E-40 303.7 37.6 249 214-522 122-389 (393)
80 3bg1_A Protein SEC13 homolog; 100.0 5.4E-37 1.8E-41 301.6 28.0 252 272-562 11-292 (316)
81 4e54_B DNA damage-binding prot 100.0 9.8E-37 3.3E-41 313.7 30.0 279 273-562 118-429 (435)
82 4gga_A P55CDC, cell division c 100.0 5.7E-35 2E-39 299.1 42.5 284 218-528 108-401 (420)
83 1p22_A F-BOX/WD-repeat protein 100.0 9.3E-36 3.2E-40 306.5 35.7 292 211-541 129-433 (435)
84 3v7d_B Cell division control p 100.0 4.7E-35 1.6E-39 303.7 40.1 269 277-562 125-420 (464)
85 4ggc_A P55CDC, cell division c 100.0 1.5E-34 5.2E-39 283.7 41.3 276 277-562 28-314 (318)
86 1p22_A F-BOX/WD-repeat protein 100.0 4.7E-35 1.6E-39 301.2 37.0 268 273-562 132-413 (435)
87 3vl1_A 26S proteasome regulato 100.0 2.7E-36 9.1E-41 308.7 27.5 283 277-562 59-364 (420)
88 2xtc_A F-box-like/WD repeat-co 100.0 1.1E-39 3.8E-44 239.2 1.6 86 3-90 2-87 (90)
89 3jrp_A Fusion protein of prote 100.0 3.6E-35 1.2E-39 295.4 35.0 255 208-522 4-287 (379)
90 2j04_B YDR362CP, TAU91; beta p 100.0 3.6E-36 1.2E-40 313.9 28.2 294 209-522 201-517 (524)
91 2j04_A TAU60, YPL007P, hypothe 100.0 6.3E-37 2.1E-41 311.8 21.7 299 214-552 14-350 (588)
92 1yfq_A Cell cycle arrest prote 100.0 1.9E-35 6.5E-40 293.4 32.0 269 272-555 9-315 (342)
93 4ggc_A P55CDC, cell division c 100.0 4.3E-34 1.5E-38 280.5 40.9 279 218-523 28-316 (318)
94 2ovr_B FBW7, F-BOX/WD repeat p 100.0 3.5E-34 1.2E-38 295.6 40.6 279 207-522 151-442 (445)
95 4h5i_A Guanine nucleotide-exch 100.0 5.9E-35 2E-39 292.8 31.3 276 274-562 14-342 (365)
96 4a11_B DNA excision repair pro 100.0 1.2E-33 3.9E-38 287.4 38.0 281 272-562 41-364 (408)
97 3dm0_A Maltose-binding peripla 100.0 4E-34 1.4E-38 311.9 36.9 243 271-562 379-631 (694)
98 2vdu_B TRNA (guanine-N(7)-)-me 100.0 1.7E-33 5.9E-38 290.8 39.4 299 216-562 5-390 (450)
99 1k8k_C P40, ARP2/3 complex 41 100.0 7.5E-34 2.6E-38 285.3 34.3 241 273-562 7-273 (372)
100 3jrp_A Fusion protein of prote 100.0 5E-34 1.7E-38 287.0 30.9 257 306-562 2-286 (379)
101 3vu4_A KMHSV2; beta-propeller 100.0 2.9E-33 9.8E-38 279.6 34.7 272 272-562 17-335 (355)
102 3dwl_C Actin-related protein 2 100.0 3.1E-35 1.1E-39 296.3 20.3 239 274-561 11-279 (377)
103 3ei3_B DNA damage-binding prot 100.0 1.4E-33 4.8E-38 285.0 31.2 253 212-522 115-382 (383)
104 2aq5_A Coronin-1A; WD40 repeat 100.0 7.9E-34 2.7E-38 288.9 29.4 275 277-562 37-341 (402)
105 3dw8_B Serine/threonine-protei 100.0 2.6E-34 8.8E-39 296.4 25.8 275 273-562 27-372 (447)
106 3mmy_A MRNA export factor; mRN 100.0 3.3E-33 1.1E-37 279.7 32.5 276 272-556 37-339 (368)
107 3f3f_A Nucleoporin SEH1; struc 100.0 8.1E-33 2.8E-37 274.2 34.8 248 309-562 5-336 (351)
108 2aq5_A Coronin-1A; WD40 repeat 100.0 1.2E-33 4.1E-38 287.5 28.4 286 217-525 36-345 (402)
109 2xyi_A Probable histone-bindin 100.0 4.7E-33 1.6E-37 285.7 33.0 260 209-523 122-411 (430)
110 3jro_A Fusion protein of prote 100.0 5.6E-34 1.9E-38 312.8 27.4 254 209-522 3-285 (753)
111 3zwl_B Eukaryotic translation 100.0 3.8E-32 1.3E-36 272.0 38.3 240 272-562 30-303 (369)
112 3bws_A Protein LP49; two-domai 100.0 4.1E-32 1.4E-36 278.8 39.2 277 275-562 123-431 (433)
113 3lrv_A PRE-mRNA-splicing facto 100.0 7.2E-34 2.5E-38 282.7 24.3 263 222-559 43-329 (343)
114 3k26_A Polycomb protein EED; W 100.0 2.3E-33 7.8E-38 280.8 27.8 266 214-521 68-365 (366)
115 3vu4_A KMHSV2; beta-propeller 100.0 9.2E-33 3.1E-37 275.9 31.9 277 209-522 13-336 (355)
116 2xyi_A Probable histone-bindin 100.0 2.3E-32 7.8E-37 280.6 33.0 246 309-562 122-409 (430)
117 3jro_A Fusion protein of prote 100.0 9.3E-33 3.2E-37 303.1 26.4 251 272-562 7-284 (753)
118 4gq1_A NUP37; propeller, trans 100.0 1.6E-32 5.5E-37 278.2 25.9 242 278-520 93-387 (393)
119 2j04_A TAU60, YPL007P, hypothe 100.0 5.7E-33 2E-37 282.7 21.0 258 274-562 15-296 (588)
120 3lrv_A PRE-mRNA-splicing facto 100.0 1.8E-31 6E-36 265.5 23.5 235 281-562 43-291 (343)
121 2vdu_B TRNA (guanine-N(7)-)-me 100.0 3.9E-30 1.3E-34 265.7 33.9 237 275-561 5-337 (450)
122 1l0q_A Surface layer protein; 100.0 1.4E-28 4.9E-33 248.8 44.1 273 228-532 3-285 (391)
123 2w18_A PALB2, fancn, partner a 100.0 1.2E-29 3.9E-34 243.1 32.8 274 275-562 40-356 (356)
124 1l0q_A Surface layer protein; 100.0 1.2E-28 4.2E-33 249.3 39.2 263 287-562 3-274 (391)
125 4gq1_A NUP37; propeller, trans 100.0 3.1E-30 1E-34 261.4 25.7 276 276-561 17-387 (393)
126 2w18_A PALB2, fancn, partner a 100.0 5.3E-30 1.8E-34 245.4 24.9 187 285-520 144-355 (356)
127 3bws_A Protein LP49; two-domai 100.0 9.9E-29 3.4E-33 253.6 36.2 282 216-522 123-432 (433)
128 1nir_A Nitrite reductase; hemo 100.0 1.6E-27 5.5E-32 250.5 37.9 312 222-562 144-513 (543)
129 2hqs_A Protein TOLB; TOLB, PAL 100.0 6.3E-28 2.2E-32 245.9 28.9 299 216-544 63-409 (415)
130 2ecf_A Dipeptidyl peptidase IV 100.0 1.5E-27 5.2E-32 262.1 33.4 333 216-561 37-457 (741)
131 1k32_A Tricorn protease; prote 99.9 9.5E-26 3.3E-30 256.6 33.1 323 205-562 42-460 (1045)
132 1k32_A Tricorn protease; prote 99.9 2.3E-25 7.9E-30 253.4 32.9 337 207-560 91-499 (1045)
133 2z3z_A Dipeptidyl aminopeptida 99.9 1.1E-24 3.8E-29 237.9 31.3 319 218-562 28-434 (706)
134 2hqs_A Protein TOLB; TOLB, PAL 99.9 1.3E-24 4.5E-29 221.4 29.1 272 276-561 64-385 (415)
135 1xfd_A DIP, dipeptidyl aminope 99.9 3.9E-25 1.3E-29 242.2 25.7 313 218-553 19-430 (723)
136 1nir_A Nitrite reductase; hemo 99.9 1.9E-23 6.5E-28 219.5 33.4 294 208-532 172-524 (543)
137 2ecf_A Dipeptidyl peptidase IV 99.9 4.4E-24 1.5E-28 234.5 29.3 277 274-562 36-412 (741)
138 3vgz_A Uncharacterized protein 99.9 1.1E-22 3.9E-27 202.2 36.7 268 275-553 41-334 (353)
139 3u4y_A Uncharacterized protein 99.9 9.6E-23 3.3E-27 201.0 35.0 270 282-562 5-303 (331)
140 2ojh_A Uncharacterized protein 99.9 8.2E-24 2.8E-28 204.3 25.8 253 291-554 17-293 (297)
141 1ri6_A Putative isomerase YBHE 99.9 1.8E-22 6.3E-27 199.6 32.9 292 229-546 7-336 (343)
142 1ri6_A Putative isomerase YBHE 99.9 1.8E-22 6.2E-27 199.6 31.2 265 288-562 7-307 (343)
143 3u4y_A Uncharacterized protein 99.9 3.8E-22 1.3E-26 196.7 32.3 276 222-525 4-307 (331)
144 2ojh_A Uncharacterized protein 99.9 7.8E-23 2.7E-27 197.4 25.9 241 206-513 32-293 (297)
145 1xfd_A DIP, dipeptidyl aminope 99.9 1.3E-23 4.4E-28 230.2 22.4 274 277-562 19-392 (723)
146 3o4h_A Acylamino-acid-releasin 99.9 3.9E-23 1.3E-27 220.4 25.1 260 275-555 22-304 (582)
147 2z3z_A Dipeptidyl aminopeptida 99.9 1.8E-22 6E-27 220.5 30.5 278 216-524 82-437 (706)
148 1pby_B Quinohemoprotein amine 99.9 1.2E-21 4.1E-26 193.2 30.7 270 287-562 2-309 (337)
149 2oit_A Nucleoporin 214KDA; NH2 99.9 3.5E-21 1.2E-25 196.8 30.7 253 216-521 37-332 (434)
150 1pby_B Quinohemoprotein amine 99.9 2.2E-21 7.6E-26 191.2 28.1 273 228-532 2-320 (337)
151 3vgz_A Uncharacterized protein 99.9 1.3E-20 4.5E-25 187.1 33.7 270 215-513 40-335 (353)
152 2oit_A Nucleoporin 214KDA; NH2 99.9 1E-21 3.5E-26 200.8 25.6 245 275-560 37-330 (434)
153 1z68_A Fibroblast activation p 99.9 5.2E-22 1.8E-26 217.2 24.3 314 220-561 20-441 (719)
154 3hfq_A Uncharacterized protein 99.9 4.3E-20 1.5E-24 183.3 33.7 249 275-562 40-316 (347)
155 3o4h_A Acylamino-acid-releasin 99.9 7.8E-21 2.7E-25 202.6 26.3 268 215-522 21-315 (582)
156 3scy_A Hypothetical bacterial 99.9 1.7E-19 5.9E-24 180.0 34.4 268 286-562 13-336 (361)
157 3hfq_A Uncharacterized protein 99.9 1E-19 3.5E-24 180.6 31.1 253 213-527 37-324 (347)
158 1jmx_B Amine dehydrogenase; ox 99.9 9.5E-20 3.2E-24 180.5 29.1 269 279-562 4-324 (349)
159 1jmx_B Amine dehydrogenase; ox 99.9 1.1E-19 3.9E-24 179.9 28.5 275 220-534 4-337 (349)
160 4a5s_A Dipeptidyl peptidase 4 99.9 4.5E-20 1.5E-24 202.3 26.4 278 217-553 18-383 (740)
161 1z68_A Fibroblast activation p 99.9 4E-21 1.4E-25 210.2 17.7 272 279-562 20-390 (719)
162 3pe7_A Oligogalacturonate lyas 99.9 1.9E-19 6.5E-24 181.5 27.6 274 280-562 41-381 (388)
163 3scy_A Hypothetical bacterial 99.8 5.6E-18 1.9E-22 169.0 34.5 256 275-541 50-360 (361)
164 1jof_A Carboxy-CIS,CIS-muconat 99.8 2.4E-17 8.1E-22 164.8 33.2 265 288-562 4-340 (365)
165 3c5m_A Oligogalacturonate lyas 99.8 1.6E-18 5.5E-23 174.9 22.6 271 277-561 38-380 (396)
166 3azo_A Aminopeptidase; POP fam 99.8 4.5E-18 1.5E-22 184.1 27.4 285 210-560 18-364 (662)
167 3pe7_A Oligogalacturonate lyas 99.8 1E-17 3.4E-22 168.8 27.3 285 208-520 23-380 (388)
168 2oiz_A Aromatic amine dehydrog 99.8 2.8E-17 9.4E-22 163.8 29.5 280 235-545 29-360 (361)
169 1q7f_A NHL, brain tumor CG1071 99.8 3.5E-16 1.2E-20 150.5 34.1 235 274-562 29-279 (286)
170 3fvz_A Peptidyl-glycine alpha- 99.8 1.3E-16 4.5E-21 156.9 31.7 248 274-562 23-321 (329)
171 1jof_A Carboxy-CIS,CIS-muconat 99.8 9.3E-17 3.2E-21 160.5 30.9 240 275-524 40-343 (365)
172 3fvz_A Peptidyl-glycine alpha- 99.8 1.9E-16 6.4E-21 155.8 30.3 248 216-521 24-321 (329)
173 1q7f_A NHL, brain tumor CG1071 99.8 8.2E-16 2.8E-20 147.9 33.5 247 213-523 27-281 (286)
174 3c5m_A Oligogalacturonate lyas 99.8 4.7E-17 1.6E-21 164.2 22.8 276 218-524 38-386 (396)
175 2dg1_A DRP35, lactonase; beta 99.8 5.3E-16 1.8E-20 152.7 29.7 267 275-554 6-301 (333)
176 2gop_A Trilobed protease; beta 99.8 5.9E-16 2E-20 153.3 30.1 256 275-561 15-329 (347)
177 2gop_A Trilobed protease; beta 99.7 1.2E-15 4.2E-20 151.0 30.2 258 217-525 16-333 (347)
178 4a5s_A Dipeptidyl peptidase 4 99.7 1.3E-16 4.4E-21 174.7 24.3 317 209-560 50-446 (740)
179 3e5z_A Putative gluconolactona 99.7 2.1E-15 7.3E-20 145.8 28.7 233 275-560 28-283 (296)
180 1qks_A Cytochrome CD1 nitrite 99.7 2.9E-14 9.9E-19 149.3 38.5 309 225-562 165-537 (567)
181 2z2n_A Virginiamycin B lyase; 99.7 1E-12 3.5E-17 126.7 42.7 277 213-562 12-294 (299)
182 2xdw_A Prolyl endopeptidase; a 99.7 9.2E-15 3.1E-19 159.3 31.4 252 276-561 126-412 (710)
183 2dg1_A DRP35, lactonase; beta 99.7 1.5E-14 5E-19 142.4 28.4 265 217-513 7-301 (333)
184 2oiz_A Aromatic amine dehydrog 99.7 1.6E-14 5.4E-19 143.8 28.9 262 285-562 14-333 (361)
185 3azo_A Aminopeptidase; POP fam 99.7 5.7E-15 2E-19 159.7 27.3 235 275-519 130-408 (662)
186 2xdw_A Prolyl endopeptidase; a 99.7 1.2E-14 4.2E-19 158.3 29.6 244 213-524 122-416 (710)
187 3e5z_A Putative gluconolactona 99.7 4.6E-14 1.6E-18 136.4 29.0 259 208-525 20-289 (296)
188 2bkl_A Prolyl endopeptidase; m 99.6 5.2E-15 1.8E-19 160.8 21.0 243 213-483 118-400 (695)
189 1rwi_B Serine/threonine-protei 99.6 1.1E-13 3.7E-18 131.6 26.4 235 317-562 25-263 (270)
190 1rwi_B Serine/threonine-protei 99.6 1E-13 3.6E-18 131.7 25.5 238 276-524 25-266 (270)
191 3dsm_A Uncharacterized protein 99.6 3.1E-13 1E-17 132.7 29.4 280 235-540 15-319 (328)
192 3no2_A Uncharacterized protein 99.6 3.9E-13 1.3E-17 128.2 29.0 242 226-532 4-262 (276)
193 3no2_A Uncharacterized protein 99.6 2E-13 6.7E-18 130.2 26.9 212 285-551 4-231 (276)
194 2qc5_A Streptogramin B lactona 99.6 1.4E-11 4.7E-16 118.7 37.9 270 275-562 20-299 (300)
195 2bkl_A Prolyl endopeptidase; m 99.6 6.4E-14 2.2E-18 152.2 23.7 266 284-561 77-395 (695)
196 1pjx_A Dfpase, DIISOPROPYLFLUO 99.6 9.9E-13 3.4E-17 127.9 29.9 239 275-562 18-298 (314)
197 1yr2_A Prolyl oligopeptidase; 99.6 2.5E-13 8.7E-18 148.6 28.1 236 314-561 161-439 (741)
198 3dsm_A Uncharacterized protein 99.6 1.6E-12 5.3E-17 127.6 27.6 253 294-561 15-300 (328)
199 1qks_A Cytochrome CD1 nitrite 99.6 1E-11 3.5E-16 130.1 35.2 267 284-562 165-476 (567)
200 2qc5_A Streptogramin B lactona 99.6 5.1E-11 1.7E-15 114.7 37.9 276 214-521 18-299 (300)
201 2z2n_A Virginiamycin B lyase; 99.6 3.3E-11 1.1E-15 116.0 35.8 233 275-561 15-253 (299)
202 2mad_H Methylamine dehydrogena 99.5 3.1E-11 1.1E-15 120.2 35.5 238 279-529 70-357 (373)
203 1pjx_A Dfpase, DIISOPROPYLFLUO 99.5 9.2E-12 3.1E-16 121.0 30.9 245 212-522 14-299 (314)
204 3sjl_D Methylamine dehydrogena 99.5 3.5E-12 1.2E-16 125.4 27.3 291 223-543 40-384 (386)
205 3g4e_A Regucalcin; six bladed 99.5 2E-11 7E-16 117.8 30.8 228 277-552 15-261 (297)
206 1yr2_A Prolyl oligopeptidase; 99.5 2.3E-12 7.9E-17 141.0 25.7 238 276-525 164-444 (741)
207 2mad_H Methylamine dehydrogena 99.5 1.6E-10 5.6E-15 114.9 36.7 263 283-562 29-349 (373)
208 2ghs_A AGR_C_1268P; regucalcin 99.5 1.2E-10 4.1E-15 114.0 31.8 225 277-553 51-292 (326)
209 3hrp_A Uncharacterized protein 99.5 1.1E-10 3.7E-15 117.9 31.4 233 316-561 131-408 (409)
210 3hrp_A Uncharacterized protein 99.4 7.7E-11 2.6E-15 119.0 29.3 233 275-520 131-408 (409)
211 1xip_A Nucleoporin NUP159; bet 99.4 5.8E-12 2E-16 124.5 18.4 181 317-550 39-231 (388)
212 3dr2_A Exported gluconolactona 99.4 1.6E-10 5.6E-15 111.9 27.5 230 276-560 46-303 (305)
213 3c75_H MADH, methylamine dehyd 99.4 2.1E-10 7E-15 115.0 28.3 242 279-530 122-410 (426)
214 3iuj_A Prolyl endopeptidase; h 99.4 2.3E-11 7.8E-16 131.9 22.7 235 314-561 127-403 (693)
215 1xip_A Nucleoporin NUP159; bet 99.4 1.1E-11 3.7E-16 122.5 18.2 166 276-453 39-226 (388)
216 3sjl_D Methylamine dehydrogena 99.4 1.9E-10 6.6E-15 113.1 26.7 266 282-562 40-362 (386)
217 2qe8_A Uncharacterized protein 99.4 3.1E-11 1.1E-15 119.1 19.9 256 275-553 17-311 (343)
218 3c75_H MADH, methylamine dehyd 99.3 2.5E-10 8.7E-15 114.3 25.4 264 284-562 82-401 (426)
219 3iuj_A Prolyl endopeptidase; h 99.3 2.4E-10 8.3E-15 123.8 27.0 243 212-525 125-408 (693)
220 3g4e_A Regucalcin; six bladed 99.3 2.3E-09 7.9E-14 103.2 30.6 226 214-510 11-260 (297)
221 3dr2_A Exported gluconolactona 99.3 5.2E-10 1.8E-14 108.3 24.8 235 205-514 34-299 (305)
222 2ghs_A AGR_C_1268P; regucalcin 99.3 4E-09 1.4E-13 103.1 30.8 222 217-511 50-291 (326)
223 2hz6_A Endoplasmic reticulum t 99.3 7.9E-14 2.7E-18 139.1 -4.6 256 285-561 8-277 (369)
224 3q7m_A Lipoprotein YFGL, BAMB; 99.3 1.5E-08 5E-13 101.2 32.5 303 226-560 52-375 (376)
225 2qe8_A Uncharacterized protein 99.3 4.8E-10 1.7E-14 110.5 21.2 269 216-519 17-318 (343)
226 1kb0_A Quinohemoprotein alcoho 99.2 6.2E-09 2.1E-13 111.9 30.4 254 285-549 127-536 (677)
227 1yiq_A Quinohemoprotein alcoho 99.2 4.6E-09 1.6E-13 113.1 29.4 303 227-551 70-537 (689)
228 3hxj_A Pyrrolo-quinoline quino 99.2 1E-09 3.5E-14 107.2 21.1 295 223-561 27-322 (330)
229 1kb0_A Quinohemoprotein alcoho 99.2 1.8E-09 6.3E-14 116.0 24.8 269 286-562 77-506 (677)
230 1yiq_A Quinohemoprotein alcoho 99.2 3.4E-09 1.2E-13 114.1 25.8 269 286-562 70-504 (689)
231 1mda_H Methylamine dehydrogena 99.2 1.3E-09 4.4E-14 107.4 20.4 246 279-543 69-367 (368)
232 2hz6_A Endoplasmic reticulum t 99.2 2.7E-11 9.3E-16 120.6 6.5 203 326-546 8-217 (369)
233 1npe_A Nidogen, entactin; glyc 99.1 4.2E-07 1.4E-11 85.8 30.7 248 287-545 2-263 (267)
234 3q7m_A Lipoprotein YFGL, BAMB; 99.1 1.3E-07 4.3E-12 94.3 28.4 259 286-561 53-335 (376)
235 1mda_H Methylamine dehydrogena 99.0 2.4E-08 8.1E-13 98.3 19.1 220 338-562 47-345 (368)
236 3hxj_A Pyrrolo-quinoline quino 99.0 1.1E-08 3.6E-13 99.9 15.6 253 283-560 28-281 (330)
237 4a2l_A BT_4663, two-component 98.9 2.1E-05 7.2E-10 86.5 43.5 309 218-561 175-524 (795)
238 2ece_A 462AA long hypothetical 98.9 5.6E-07 1.9E-11 89.1 27.0 219 325-551 93-399 (462)
239 4a2l_A BT_4663, two-component 98.9 4.2E-05 1.4E-09 84.1 44.6 314 215-561 214-569 (795)
240 1kv9_A Type II quinohemoprotei 98.9 2.9E-07 9.9E-12 98.8 24.7 269 286-562 66-487 (668)
241 1kv9_A Type II quinohemoprotei 98.9 1.5E-06 5.2E-11 93.2 29.3 265 286-552 117-521 (668)
242 2ece_A 462AA long hypothetical 98.8 1.4E-06 4.9E-11 86.2 24.2 183 369-561 97-350 (462)
243 2iwa_A Glutamine cyclotransfer 98.8 1.2E-06 4.1E-11 81.5 22.3 193 318-522 23-237 (266)
244 2ad6_A Methanol dehydrogenase 98.8 4.9E-06 1.7E-10 87.4 29.7 262 286-550 115-524 (571)
245 2ad6_A Methanol dehydrogenase 98.8 2.4E-06 8.2E-11 89.7 27.1 267 287-562 63-493 (571)
246 2fp8_A Strictosidine synthase; 98.8 3E-06 1E-10 82.3 25.6 234 277-562 21-312 (322)
247 1w6s_A Methanol dehydrogenase 98.7 4.1E-06 1.4E-10 88.0 27.3 265 287-562 63-502 (599)
248 1npe_A Nidogen, entactin; glyc 98.7 3.5E-05 1.2E-09 72.4 30.9 223 328-561 2-236 (267)
249 1fwx_A Nitrous oxide reductase 98.7 1.3E-06 4.4E-11 89.6 21.7 216 325-551 99-406 (595)
250 2iwa_A Glutamine cyclotransfer 98.7 7.1E-06 2.4E-10 76.2 24.9 189 361-562 24-236 (266)
251 1w6s_A Methanol dehydrogenase 98.7 8.8E-06 3E-10 85.5 28.4 82 469-551 451-535 (599)
252 3v9f_A Two-component system se 98.7 0.0002 6.9E-09 78.4 39.3 322 216-560 258-608 (781)
253 3nol_A Glutamine cyclotransfer 98.7 4.6E-06 1.6E-10 76.6 21.6 180 318-511 45-244 (262)
254 3v9f_A Two-component system se 98.7 0.00037 1.3E-08 76.4 41.0 314 216-560 211-565 (781)
255 2p4o_A Hypothetical protein; p 98.6 3.3E-05 1.1E-09 74.2 28.4 225 275-513 32-279 (306)
256 1flg_A Protein (quinoprotein e 98.6 8.2E-05 2.8E-09 78.2 33.0 82 469-551 464-548 (582)
257 2fp8_A Strictosidine synthase; 98.6 4.6E-05 1.6E-09 73.8 28.5 258 216-521 19-312 (322)
258 2xbg_A YCF48-like protein; pho 98.6 0.00025 8.4E-09 68.8 33.2 266 275-560 36-319 (327)
259 1k3i_A Galactose oxidase precu 98.6 4.8E-06 1.6E-10 89.4 22.2 269 220-511 190-530 (656)
260 3v64_C Agrin; beta propeller, 98.5 0.00022 7.6E-09 69.8 31.0 241 278-529 37-282 (349)
261 3nok_A Glutaminyl cyclase; bet 98.5 1.7E-05 5.7E-10 72.9 20.7 178 318-510 57-253 (268)
262 3nol_A Glutamine cyclotransfer 98.5 2.7E-05 9.3E-10 71.5 21.9 179 361-553 46-245 (262)
263 3nok_A Glutaminyl cyclase; bet 98.5 5.9E-05 2E-09 69.3 24.0 178 361-552 58-254 (268)
264 1fwx_A Nitrous oxide reductase 98.5 4.6E-06 1.6E-10 85.6 18.3 182 370-562 104-360 (595)
265 3mbr_X Glutamine cyclotransfer 98.5 4.8E-05 1.6E-09 69.2 23.1 180 317-510 22-222 (243)
266 1flg_A Protein (quinoprotein e 98.5 8.3E-05 2.8E-09 78.1 27.6 229 327-562 117-515 (582)
267 3v65_B Low-density lipoprotein 98.4 0.00025 8.5E-09 70.5 29.1 241 279-530 81-326 (386)
268 1ijq_A LDL receptor, low-densi 98.4 0.0016 5.3E-08 62.7 33.8 225 296-529 10-245 (316)
269 2xe4_A Oligopeptidase B; hydro 98.4 4E-05 1.4E-09 83.5 24.7 193 213-425 170-394 (751)
270 3mbr_X Glutamine cyclotransfer 98.4 0.00011 3.8E-09 66.8 23.5 178 361-552 24-223 (243)
271 2p4o_A Hypothetical protein; p 98.4 0.0005 1.7E-08 65.9 28.5 224 316-553 32-278 (306)
272 3tc9_A Hypothetical hydrolase; 98.3 0.00049 1.7E-08 69.4 28.5 238 276-562 138-429 (430)
273 2xe4_A Oligopeptidase B; hydro 98.3 4.3E-05 1.5E-09 83.2 21.4 226 276-552 175-443 (751)
274 3p5b_L Low density lipoprotein 98.3 0.0025 8.5E-08 63.5 31.9 233 288-530 85-328 (400)
275 3sov_A LRP-6, low-density lipo 98.2 0.0017 5.9E-08 62.4 29.3 226 295-529 12-245 (318)
276 1k3i_A Galactose oxidase precu 98.2 0.0001 3.4E-09 79.1 21.7 263 279-552 190-530 (656)
277 3s94_A LRP-6, low-density lipo 98.2 0.0055 1.9E-07 64.7 33.8 326 216-561 40-421 (619)
278 3qqz_A Putative uncharacterize 98.2 0.0022 7.7E-08 59.0 26.6 200 310-520 21-251 (255)
279 2xbg_A YCF48-like protein; pho 98.1 0.0069 2.4E-07 58.5 34.8 272 216-519 36-319 (327)
280 4hw6_A Hypothetical protein, I 98.1 0.0014 4.9E-08 66.0 27.1 233 318-562 141-432 (433)
281 1ijq_A LDL receptor, low-densi 98.1 0.0078 2.7E-07 57.8 31.7 218 330-560 4-235 (316)
282 3v64_C Agrin; beta propeller, 98.0 0.0097 3.3E-07 58.0 30.2 214 336-560 52-272 (349)
283 3v65_B Low-density lipoprotein 98.0 0.0045 1.5E-07 61.4 27.6 221 329-560 89-315 (386)
284 4hw6_A Hypothetical protein, I 98.0 0.006 2E-07 61.4 28.8 233 276-521 140-432 (433)
285 3m0c_C LDL receptor, low-densi 98.0 0.0074 2.5E-07 65.3 30.3 226 295-529 403-639 (791)
286 3p5b_L Low density lipoprotein 97.9 0.018 6.2E-07 57.2 30.3 221 329-560 85-317 (400)
287 3kya_A Putative phosphatase; s 97.9 0.013 4.6E-07 59.3 29.0 240 276-562 140-474 (496)
288 3amr_A 3-phytase; beta-propell 97.9 0.0086 2.9E-07 57.4 25.3 193 325-530 38-272 (355)
289 2ism_A Putative oxidoreductase 97.9 0.0075 2.6E-07 58.9 25.9 68 276-345 32-113 (352)
290 1n7d_A LDL receptor, low-densi 97.7 0.00026 8.8E-09 76.1 14.2 227 295-530 385-622 (699)
291 3amr_A 3-phytase; beta-propell 97.7 0.0072 2.5E-07 57.9 22.4 181 370-562 42-262 (355)
292 2p9w_A MAL S 1 allergenic prot 97.7 0.0023 7.9E-08 60.7 18.9 157 396-562 10-214 (334)
293 3sov_A LRP-6, low-density lipo 97.7 0.036 1.2E-06 53.1 27.4 215 336-560 12-235 (318)
294 4a0p_A LRP6, LRP-6, low-densit 97.6 0.11 3.6E-06 54.9 31.1 221 294-525 13-240 (628)
295 3qqz_A Putative uncharacterize 97.6 0.046 1.6E-06 50.2 25.7 196 211-425 22-249 (255)
296 3a9g_A Putative uncharacterize 97.6 0.042 1.4E-06 53.5 26.0 60 492-551 259-330 (354)
297 3m0c_C LDL receptor, low-densi 97.6 0.085 2.9E-06 57.1 30.4 215 335-560 402-629 (791)
298 3ei3_A DNA damage-binding prot 97.5 0.2 6.8E-06 56.7 38.8 321 215-562 553-954 (1158)
299 3tc9_A Hypothetical hydrolase; 97.5 0.0033 1.1E-07 63.3 17.0 152 400-562 138-300 (430)
300 3s94_A LRP-6, low-density lipo 97.4 0.04 1.4E-06 58.1 25.6 223 295-526 17-247 (619)
301 2g8s_A Glucose/sorbosone dehyd 97.4 0.12 4.2E-06 50.1 28.0 65 492-556 271-347 (353)
302 3kya_A Putative phosphatase; s 97.2 0.22 7.5E-06 50.4 29.8 114 217-345 140-277 (496)
303 2p9w_A MAL S 1 allergenic prot 97.2 0.037 1.3E-06 52.5 19.2 153 362-523 17-216 (334)
304 1n7d_A LDL receptor, low-densi 97.1 0.0021 7.3E-08 69.0 11.7 215 275-499 406-633 (699)
305 2ism_A Putative oxidoreductase 96.9 0.32 1.1E-05 47.2 28.5 101 216-333 31-152 (352)
306 4a0p_A LRP6, LRP-6, low-densit 96.9 0.55 1.9E-05 49.4 42.1 318 214-561 121-506 (628)
307 3sre_A PON1, serum paraoxonase 96.9 0.075 2.6E-06 51.4 18.9 155 401-562 52-251 (355)
308 3pbp_A Nucleoporin NUP82; beta 96.8 0.11 3.7E-06 50.9 19.4 133 378-518 41-208 (452)
309 3sre_A PON1, serum paraoxonase 96.8 0.22 7.4E-06 48.2 21.4 176 335-520 81-296 (355)
310 2xzh_A Clathrin heavy chain 1; 96.8 0.38 1.3E-05 45.3 31.9 207 323-539 74-308 (365)
311 1bpo_A Protein (clathrin); cla 96.6 0.66 2.3E-05 45.5 32.0 211 323-543 73-311 (494)
312 2vpj_A Kelch-like protein 12; 96.5 0.2 7E-06 47.1 18.9 223 285-524 14-280 (301)
313 3a9g_A Putative uncharacterize 96.1 1.1 3.9E-05 43.2 26.6 101 216-333 29-152 (354)
314 2xn4_A Kelch-like protein 2; s 95.9 0.57 2E-05 44.0 18.8 222 286-524 16-278 (302)
315 2vpj_A Kelch-like protein 12; 95.8 0.55 1.9E-05 44.0 18.1 209 337-562 31-277 (301)
316 4asc_A Kelch repeat and BTB do 95.7 1.5 5E-05 41.5 20.8 219 288-524 7-279 (315)
317 3ii7_A Kelch-like protein 7; p 95.7 1 3.5E-05 42.3 19.5 222 286-524 12-274 (306)
318 1cru_A Protein (soluble quinop 95.6 1.1 3.7E-05 45.1 20.2 109 399-511 27-163 (454)
319 3ei3_A DNA damage-binding prot 95.2 5.5 0.00019 45.1 37.2 306 224-561 283-634 (1158)
320 3ii7_A Kelch-like protein 7; p 95.1 1.4 4.8E-05 41.3 18.3 217 329-562 14-271 (306)
321 2be1_A Serine/threonine-protei 95.0 2.3 8E-05 40.6 19.3 188 287-485 11-236 (339)
322 1xi4_A Clathrin heavy chain; a 95.0 1.7 5.8E-05 49.4 20.4 193 323-526 73-293 (1630)
323 1zgk_A Kelch-like ECH-associat 95.0 1.6 5.5E-05 41.0 18.3 224 284-524 23-289 (308)
324 2xn4_A Kelch-like protein 2; s 94.9 1.4 4.9E-05 41.2 17.8 209 337-562 30-275 (302)
325 2g8s_A Glucose/sorbosone dehyd 94.9 3 0.0001 40.2 23.3 54 400-453 272-335 (353)
326 3qhy_B Beta-lactamase inhibito 94.8 1.4 4.9E-05 41.0 17.1 220 276-522 25-246 (282)
327 1tl2_A L10, protein (tachylect 94.7 0.95 3.3E-05 40.1 14.1 139 400-556 42-203 (236)
328 2be1_A Serine/threonine-protei 94.7 0.19 6.6E-06 48.1 10.7 195 328-527 11-236 (339)
329 3pbp_A Nucleoporin NUP82; beta 94.5 0.56 1.9E-05 46.0 13.4 125 216-342 66-208 (452)
330 2woz_A Kelch repeat and BTB do 94.2 3.8 0.00013 38.6 19.5 140 288-432 18-187 (318)
331 4asc_A Kelch repeat and BTB do 94.2 3.3 0.00011 38.9 18.5 177 330-524 8-223 (315)
332 2xzh_A Clathrin heavy chain 1; 93.8 4.6 0.00016 38.1 29.1 234 282-522 74-332 (365)
333 1cru_A Protein (soluble quinop 93.5 6.9 0.00023 39.1 28.4 102 317-418 28-163 (454)
334 3das_A Putative oxidoreductase 93.3 6 0.00021 37.9 27.9 71 276-346 33-116 (347)
335 1zgk_A Kelch-like ECH-associat 92.4 4.6 0.00016 37.8 16.3 220 327-562 25-286 (308)
336 2woz_A Kelch repeat and BTB do 91.8 8.5 0.00029 36.0 18.5 171 338-524 25-233 (318)
337 1xi4_A Clathrin heavy chain; a 91.8 7.4 0.00025 44.4 18.5 235 282-524 73-333 (1630)
338 3ott_A Two-component system se 91.2 18 0.00061 38.8 40.5 312 216-561 146-500 (758)
339 1bpo_A Protein (clathrin); cla 90.6 14 0.00048 36.4 29.6 234 282-523 73-332 (494)
340 2zwa_A Leucine carboxyl methyl 89.9 11 0.00036 40.2 17.5 191 325-525 396-638 (695)
341 2uvk_A YJHT; unknown function, 89.8 6.6 0.00023 37.5 14.8 39 514-553 286-326 (357)
342 3sbq_A Nitrous-oxide reductase 89.7 0.65 2.2E-05 47.0 7.2 90 472-562 299-407 (638)
343 3ott_A Two-component system se 89.1 26 0.0009 37.4 44.4 266 274-560 145-445 (758)
344 2zwa_A Leucine carboxyl methyl 88.2 18 0.00062 38.3 17.9 148 284-431 396-579 (695)
345 1tl2_A L10, protein (tachylect 87.8 14 0.00048 32.7 14.3 100 401-515 90-203 (236)
346 2uvk_A YJHT; unknown function, 87.4 8.2 0.00028 36.9 13.5 49 337-385 168-224 (357)
347 3qhy_B Beta-lactamase inhibito 87.3 18 0.00061 33.3 20.3 180 276-479 64-245 (282)
348 2wg3_C Hedgehog-interacting pr 87.1 26 0.00089 35.0 24.6 104 317-420 15-160 (463)
349 4hvt_A Ritya.17583.B, post-pro 86.0 38 0.0013 35.9 20.1 217 323-552 137-415 (711)
350 3s25_A Hypothetical 7-bladed b 85.6 23 0.00079 33.0 21.8 139 281-430 59-217 (302)
351 3sbq_A Nitrous-oxide reductase 85.2 2.7 9.3E-05 42.6 8.6 92 458-550 332-452 (638)
352 1uuj_A Platelet-activating fac 84.4 0.28 9.6E-06 35.8 0.8 31 7-37 11-41 (88)
353 3das_A Putative oxidoreductase 83.3 32 0.0011 32.7 29.1 112 210-334 26-158 (347)
354 3s25_A Hypothetical 7-bladed b 82.7 31 0.0011 32.1 25.4 235 284-551 23-280 (302)
355 4gq2_M Nucleoporin NUP120; bet 63.2 11 0.00038 41.6 6.9 38 493-530 237-274 (950)
356 3zwu_A Alkaline phosphatase PH 59.2 34 0.0012 35.3 9.2 57 494-550 478-548 (592)
357 4a9v_A PHOX; hydrolase, beta-p 58.6 47 0.0016 33.9 9.9 59 493-551 477-549 (592)
358 2l1n_A Uncharacterized protein 55.8 4 0.00014 31.1 1.2 19 4-25 18-36 (120)
359 3b7f_A Glycosyl hydrolase, BNR 52.8 1.6E+02 0.0055 28.1 24.6 76 275-351 55-152 (394)
360 4gq2_M Nucleoporin NUP120; bet 52.6 17 0.00057 40.2 6.0 37 400-436 237-273 (950)
361 4fhn_B Nucleoporin NUP120; pro 51.2 11 0.00039 42.6 4.5 38 493-530 239-276 (1139)
362 3f7f_A Nucleoporin NUP120; nuc 50.4 26 0.00089 36.9 6.6 37 493-531 223-259 (729)
363 3b7f_A Glycosyl hydrolase, BNR 46.7 2E+02 0.0068 27.4 26.0 50 287-337 23-77 (394)
364 4fhn_B Nucleoporin NUP120; pro 41.6 19 0.00064 40.8 4.4 37 400-436 239-275 (1139)
365 3f7f_A Nucleoporin NUP120; nuc 40.3 38 0.0013 35.7 6.0 35 400-436 223-257 (729)
366 2d68_A FOP, FGFR1OP; alpha hel 37.5 10 0.00035 27.3 0.9 29 9-37 21-49 (82)
367 2zux_A YESW protein; beta-prop 33.8 4E+02 0.014 27.1 19.8 42 314-355 177-247 (591)
368 2dk5_A DNA-directed RNA polyme 32.9 16 0.00055 27.0 1.4 50 3-60 17-67 (91)
369 3uc1_A DNA gyrase subunit A; D 31.0 3.3E+02 0.011 25.4 11.4 102 459-561 107-226 (327)
370 3zwu_A Alkaline phosphatase PH 28.9 2.1E+02 0.0071 29.4 9.3 38 472-509 510-548 (592)
371 4a9v_A PHOX; hydrolase, beta-p 27.3 2E+02 0.0068 29.4 8.6 38 472-509 510-548 (592)
372 2wg3_C Hedgehog-interacting pr 26.9 4.6E+02 0.016 25.7 28.7 51 276-326 15-79 (463)
373 1xkm_A Distinctin chain A; por 23.4 54 0.0019 16.7 1.8 15 43-57 3-19 (26)
374 2zyz_A Putative uncharacterize 22.4 49 0.0017 25.6 2.4 51 7-57 22-79 (116)
375 2jp7_A MRNA export factor MEX6 22.3 18 0.00063 23.9 -0.0 30 14-52 25-56 (57)
376 1dum_A Magainin 2; antibiotic, 21.7 14 0.00047 18.9 -0.6 12 22-33 5-16 (26)
377 3no0_A DNA gyrase subunit A; D 21.6 4.4E+02 0.015 23.7 17.1 139 409-558 79-239 (276)
No 1
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=8.4e-51 Score=415.10 Aligned_cols=297 Identities=29% Similarity=0.500 Sum_probs=260.5
Q ss_pred eeEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCC
Q 008496 208 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 287 (563)
Q Consensus 208 ~~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~ 287 (563)
...+.+|..+|++++|+|++.+|++|+.|++|+|||+.++... ..+ ..|...|++++|+|+|+
T Consensus 101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~-------------~~l----~~h~~~V~~v~~~~~~~ 163 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFE-------------RTL----KGHTDSVQDISFDHSGK 163 (410)
T ss_dssp SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCC-------------EEE----CCCSSCEEEEEECTTSS
T ss_pred eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE-------------EEE----eccCCcEEEEEEcCCCC
Confidence 3568899999999999999999999999999999999865421 111 23567899999999999
Q ss_pred EEEEEeCCCeEEEEEcCC-ceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecC
Q 008496 288 LLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR 366 (563)
Q Consensus 288 ~l~sg~~dg~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 366 (563)
+|++|+.||.|++||..+ .....+.+|..+|.+++|+|++++|++|+.|++|++||++++.+.
T Consensus 164 ~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~---------------- 227 (410)
T 1vyh_C 164 LLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCV---------------- 227 (410)
T ss_dssp EEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEE----------------
T ss_pred EEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEE----------------
Confidence 999999999999999865 566788999999999999999999999999999999999876432
Q ss_pred CCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEE
Q 008496 367 NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTI 446 (563)
Q Consensus 367 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~ 446 (563)
..+.+|...|.+++|+|++++|++|+.|++|++||+.++.+...+..|...|.++
T Consensus 228 -------------------------~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~ 282 (410)
T 1vyh_C 228 -------------------------KTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECI 282 (410)
T ss_dssp -------------------------EEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEE
T ss_pred -------------------------EEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEE
Confidence 3456788899999999999999999999999999999999999999999999999
Q ss_pred EEccCCCCCC-----------CCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcE
Q 008496 447 RWSPTGSGTN-----------NPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSM 515 (563)
Q Consensus 447 ~~~p~~~~~~-----------~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v 515 (563)
+|+|++.... ......+|++|+.|++|++||+++++++..+.+|..+|++++|+|+|++|++|+.||.|
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i 362 (410)
T 1vyh_C 283 SWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTL 362 (410)
T ss_dssp EECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEE
T ss_pred EEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeE
Confidence 9999642100 00012378999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCeeEEEEecC-CCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496 516 HIWSLKEGKIVKTYTGN-GGIFEVCWNKEGDKIAACFANHTVCVLDFR 562 (563)
Q Consensus 516 ~iw~~~~~~~~~~~~~~-~~i~~l~w~~~g~~la~~~~~~~v~v~~~~ 562 (563)
++||+.+++++.++.++ ..|.+++|+|++..||+|+.|++|.||++|
T Consensus 363 ~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 363 RVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp EEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred EEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence 99999999988888764 469999999999999999999999999986
No 2
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=6.2e-46 Score=398.78 Aligned_cols=332 Identities=23% Similarity=0.358 Sum_probs=280.2
Q ss_pred CceeEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCC
Q 008496 206 SDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE 285 (563)
Q Consensus 206 ~~~~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~ 285 (563)
....+|.+|...|++++|+|+|++||+|+.|++|+|||+.++... ....+ ..+...|.+++|+|+
T Consensus 50 ~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~-----------~~~~~----~~~~~~v~~v~fs~d 114 (611)
T 1nr0_A 50 TDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHI-----------LKTTI----PVFSGPVKDISWDSE 114 (611)
T ss_dssp SCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCC-----------EEEEE----ECSSSCEEEEEECTT
T ss_pred ccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcce-----------eeEee----cccCCceEEEEECCC
Confidence 345678999999999999999999999999999999998643210 01111 234578999999999
Q ss_pred CCEEEEEeCC----CeEEEEEcCCceeEeeccCCCCEEEEEeCCCCC-EEEEeeCCCcEEEEECCCCceeEEeeecccCe
Q 008496 286 GTLLATGSYD----GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGD-YLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPT 360 (563)
Q Consensus 286 g~~l~sg~~d----g~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~ 360 (563)
|++|++++.+ +.|++|+. +.....+.+|..+|.+++|+|++. .|++|+.|++|++||..++++...+..|...+
T Consensus 115 g~~l~~~~~~~~~~~~v~~wd~-~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V 193 (611)
T 1nr0_A 115 SKRIAAVGEGRERFGHVFLFDT-GTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFV 193 (611)
T ss_dssp SCEEEEEECCSSCSEEEEETTT-CCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCE
T ss_pred CCEEEEEECCCCceeEEEEeeC-CCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCce
Confidence 9999999875 47999984 455567889999999999999987 59999999999999999999888999999999
Q ss_pred EEEecCCC-ceEEEEeCCCeEEEEEcCCCcceeeec-------CCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCce
Q 008496 361 LDVDWRNN-VSFATSSTDNMIYVCKIGENRPIKTFA-------GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY 432 (563)
Q Consensus 361 ~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~~-------~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~ 432 (563)
.++.|.++ ..+++++.|++|++|++..+..+..+. +|.+.|.+++|+|++++|++|+.|++|++||+.+++.
T Consensus 194 ~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~ 273 (611)
T 1nr0_A 194 HSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKV 273 (611)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred EEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCce
Confidence 99999765 567899999999999998888877774 7999999999999999999999999999999987665
Q ss_pred ee-------------------------------------------eecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeC
Q 008496 433 VH-------------------------------------------DLREHSKEIYTIRWSPTGSGTNNPNQQLILASASF 469 (563)
Q Consensus 433 ~~-------------------------------------------~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~ 469 (563)
+. .+.+|...|++++|+|++. +|++++.
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~---------~l~s~s~ 344 (611)
T 1nr0_A 274 EKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGK---------TLFSADA 344 (611)
T ss_dssp EEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS---------EEEEEET
T ss_pred eeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCC---------EEEEEeC
Confidence 43 3357889999999999886 7899999
Q ss_pred CCeEEEEeCCCCeEEEEe-c------------------------------------------------------------
Q 008496 470 DSTVKLWDVELGKLLYSL-N------------------------------------------------------------ 488 (563)
Q Consensus 470 dg~i~iwd~~~~~~~~~~-~------------------------------------------------------------ 488 (563)
|++|++||+.++++...+ .
T Consensus 345 D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~ 424 (611)
T 1nr0_A 345 EGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGD 424 (611)
T ss_dssp TSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSS
T ss_pred CCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCc
Confidence 999999998766543221 0
Q ss_pred ---------------------CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCee--EEEEecCCCEEEEEEcCCCC
Q 008496 489 ---------------------GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKI--VKTYTGNGGIFEVCWNKEGD 545 (563)
Q Consensus 489 ---------------------~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~--~~~~~~~~~i~~l~w~~~g~ 545 (563)
.|...+.+++|||||++||+|+.|++|++|++.++.+ +........|.+++|+|+|+
T Consensus 425 ~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~ 504 (611)
T 1nr0_A 425 IAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGA 504 (611)
T ss_dssp CEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSS
T ss_pred EEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCC
Confidence 1234578899999999999999999999999987754 34444566799999999999
Q ss_pred EEEEEECCCeEEEEEee
Q 008496 546 KIAACFANHTVCVLDFR 562 (563)
Q Consensus 546 ~la~~~~~~~v~v~~~~ 562 (563)
+||+++.|++|.+||+.
T Consensus 505 ~las~s~d~~v~~w~~~ 521 (611)
T 1nr0_A 505 FLVATDQSRKVIPYSVA 521 (611)
T ss_dssp EEEEEETTSCEEEEEGG
T ss_pred EEEEEcCCCCEEEEEcC
Confidence 99999999999999974
No 3
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.4e-46 Score=381.15 Aligned_cols=337 Identities=27% Similarity=0.516 Sum_probs=292.7
Q ss_pred cCCCCceEEEEECCCCC-EEEEeeCCCcEEEEec----CCCCCcCCCCCCCceEEEEEeee-c--ccccCCCCeEEEEEC
Q 008496 212 EGHTSEVCACAWSPAGS-LLASGSGDSTARIWTI----ADGTSNGGAQNGPLNVLVLKHVK-G--RTNEKSKDVTTLDWN 283 (563)
Q Consensus 212 ~~h~~~V~~~~~sp~~~-~latgs~D~~i~iW~~----~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~V~~l~~s 283 (563)
..|.+.|++++|+|+++ +||+|+.|+.|++|++ .++..... ......+.+.. . ....+...|++++|+
T Consensus 42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 117 (425)
T 1r5m_A 42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWK----LTIIAELRHPFALSASSGKTTNQVTCLAWS 117 (425)
T ss_dssp EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEE----EEEEEEEECCCCCC------CBCEEEEEEC
T ss_pred eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCcccccc----ccccccccccccccccccCCCCceEEEEEc
Confidence 34669999999999999 9999999999999999 65431000 00011111100 0 011235689999999
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccC----
Q 008496 284 GEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGP---- 359 (563)
Q Consensus 284 ~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~---- 359 (563)
|++++|++|+.||.|++|+..+.....+..|..+|.+++|+|++++|++++.|+.|++||+.+++....+..+...
T Consensus 118 ~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 197 (425)
T 1r5m_A 118 HDGNSIVTGVENGELRLWNKTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSI 197 (425)
T ss_dssp TTSSEEEEEETTSCEEEEETTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC-------
T ss_pred CCCCEEEEEeCCCeEEEEeCCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccce
Confidence 9999999999999999999888888899999999999999999999999999999999999999988888777665
Q ss_pred -----------eEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCC
Q 008496 360 -----------TLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMK 428 (563)
Q Consensus 360 -----------~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~ 428 (563)
+..+.|.++..+++++.++.|++|++....++..+.+|...|.+++|+|++++|++++.|+.|++||+.
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~ 277 (425)
T 1r5m_A 198 NAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGG 277 (425)
T ss_dssp --------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSS
T ss_pred eeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECC
Confidence 778888888889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEE
Q 008496 429 QDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLAS 508 (563)
Q Consensus 429 ~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~las 508 (563)
+++.+..+..|...|.+++|+|++ ++++++.||.|++||+++++.+..+..|..+|.+++|+|++++|++
T Consensus 278 ~~~~~~~~~~~~~~i~~~~~~~~~----------~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 347 (425)
T 1r5m_A 278 NGNSQNCFYGHSQSIVSASWVGDD----------KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAV 347 (425)
T ss_dssp SBSCSEEECCCSSCEEEEEEETTT----------EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEE
T ss_pred CCccceEecCCCccEEEEEECCCC----------EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEE
Confidence 999888899999999999999975 5889999999999999999999999999999999999999999999
Q ss_pred EeCCCcEEEEecCCCe--------------------eEEEEecC--C-CEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496 509 GSLDKSMHIWSLKEGK--------------------IVKTYTGN--G-GIFEVCWNKEGDKIAACFANHTVCVLDFR 562 (563)
Q Consensus 509 gs~dg~v~iw~~~~~~--------------------~~~~~~~~--~-~i~~l~w~~~g~~la~~~~~~~v~v~~~~ 562 (563)
|+.||.|++|++.+++ ++..+..+ + .|.+++|+|+|++||+++.||.|.|||++
T Consensus 348 ~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 348 AFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp EETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred EECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence 9999999999999888 88888776 5 89999999999999999999999999985
No 4
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=4.6e-45 Score=392.00 Aligned_cols=335 Identities=19% Similarity=0.327 Sum_probs=271.8
Q ss_pred eeEecCCCCceEEEEECCCCC-EEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCC
Q 008496 208 VTILEGHTSEVCACAWSPAGS-LLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG 286 (563)
Q Consensus 208 ~~~l~~h~~~V~~~~~sp~~~-~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g 286 (563)
...+.+|...|++++|+|++. +|++|+.|++|++|+..++. ....+ ..|...|++++|+|+|
T Consensus 140 ~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~-------------~~~~l----~~H~~~V~~v~fspdg 202 (611)
T 1nr0_A 140 NGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFK-------------FKSTF----GEHTKFVHSVRYNPDG 202 (611)
T ss_dssp CBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBE-------------EEEEE----CCCSSCEEEEEECTTS
T ss_pred cceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCe-------------Eeeee----ccccCceEEEEECCCC
Confidence 346789999999999999986 69999999999999975422 11122 2456789999999999
Q ss_pred CEEEEEeCCCeEEEEEcC-CceeEeec-------cCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeec--
Q 008496 287 TLLATGSYDGQARIWSTN-GDLKCTLS-------KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFH-- 356 (563)
Q Consensus 287 ~~l~sg~~dg~i~vw~~~-~~~~~~~~-------~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~-- 356 (563)
++|++|+.||.|++|+.. +.....+. +|.++|++++|+|++++|++++.|++|++||+.++++...+..+
T Consensus 203 ~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~ 282 (611)
T 1nr0_A 203 SLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTR 282 (611)
T ss_dssp SEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSS
T ss_pred CEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCC
Confidence 999999999999999964 55555553 79999999999999999999999999999999999888777543
Q ss_pred -ccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeee
Q 008496 357 -SGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHD 435 (563)
Q Consensus 357 -~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~ 435 (563)
......+.| ....+++++.|+.+++|+.....+...+.+|...|++++|+|++++|++++.|++|++||+.++.....
T Consensus 283 ~~~~~~~~~~-~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~ 361 (611)
T 1nr0_A 283 IEDQQLGIIW-TKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRV 361 (611)
T ss_dssp GGGCEEEEEE-CSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEC
T ss_pred ccceeEEEEE-cCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeee
Confidence 234556667 556788999999999999988888888999999999999999999999999999999999987765443
Q ss_pred e-cccCCCEEEEEEccCCCC------------------------------------------------------------
Q 008496 436 L-REHSKEIYTIRWSPTGSG------------------------------------------------------------ 454 (563)
Q Consensus 436 ~-~~~~~~i~~~~~~p~~~~------------------------------------------------------------ 454 (563)
+ ..|...|.+++|++++..
T Consensus 362 ~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~ 441 (611)
T 1nr0_A 362 FPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGK 441 (611)
T ss_dssp SSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTE
T ss_pred cccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCc
Confidence 3 234444444333321100
Q ss_pred -------------CCCCCCcEEEEEEeCCCeEEEEeCCCCeE--EEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 008496 455 -------------TNNPNQQLILASASFDSTVKLWDVELGKL--LYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWS 519 (563)
Q Consensus 455 -------------~~~~~~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~ 519 (563)
...|++ .+|++|+.|++|++||+..+.. +.. .+|...|++++|||||++||+++.|++|++|+
T Consensus 442 ~~~~~~~~~v~~va~spdg-~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~ 519 (611)
T 1nr0_A 442 LTEVPISYNSSCVALSNDK-QFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYS 519 (611)
T ss_dssp EEEEECSSCEEEEEECTTS-CEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred eeeeecCCCceEEEEeCCC-CEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEE
Confidence 001222 2789999999999999987654 334 67999999999999999999999999999999
Q ss_pred cCC-CeeEEE--Ee-cCCCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496 520 LKE-GKIVKT--YT-GNGGIFEVCWNKEGDKIAACFANHTVCVLDFR 562 (563)
Q Consensus 520 ~~~-~~~~~~--~~-~~~~i~~l~w~~~g~~la~~~~~~~v~v~~~~ 562 (563)
+.+ ++++.. +. +...|.+++|+|||++||+|+.|++|+|||+.
T Consensus 520 ~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~ 566 (611)
T 1nr0_A 520 VANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMN 566 (611)
T ss_dssp GGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred cCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECC
Confidence 987 665443 23 45679999999999999999999999999974
No 5
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=5.1e-45 Score=359.46 Aligned_cols=289 Identities=19% Similarity=0.382 Sum_probs=259.5
Q ss_pred eEecCCCCceEEEEECCC----CCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECC
Q 008496 209 TILEGHTSEVCACAWSPA----GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG 284 (563)
Q Consensus 209 ~~l~~h~~~V~~~~~sp~----~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~ 284 (563)
..+.+|.+.|++++|+|+ +.+|+||+.|++|+||++..+.. .....+ ..+...|++++|++
T Consensus 26 ~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~-----------~~~~~l----~gh~~~v~~~~~~~ 90 (321)
T 3ow8_A 26 KQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERL-----------DLQWSL----EGHQLGVVSVDISH 90 (321)
T ss_dssp EETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEE-----------EEEEEE----CCCSSCEEEEEECS
T ss_pred eecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCe-----------eeeeee----ccCCCCEEEEEECC
Confidence 456799999999999985 56999999999999999864321 111112 34567899999999
Q ss_pred CCCEEEEEeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEE
Q 008496 285 EGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 363 (563)
Q Consensus 285 ~g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~ 363 (563)
++.++++|+.|+.|++||.. +.....+..|...+.+++|+|++++|++|+.|++|++||+.++.....+..+...+..+
T Consensus 91 ~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~ 170 (321)
T 3ow8_A 91 TLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSI 170 (321)
T ss_dssp SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEE
T ss_pred CCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEE
Confidence 99999999999999999975 55667788899999999999999999999999999999999999888888888889999
Q ss_pred ecCCC-ceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCC
Q 008496 364 DWRNN-VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKE 442 (563)
Q Consensus 364 ~~~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~ 442 (563)
.|.++ ..+++++.|+.|++|++.+.+++..+.+|...|.+++|+|++++|++|+.|++|++||+++...+..+.+|...
T Consensus 171 ~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~ 250 (321)
T 3ow8_A 171 AYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASW 250 (321)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSC
T ss_pred EECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCc
Confidence 99765 56788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 008496 443 IYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLK 521 (563)
Q Consensus 443 i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~ 521 (563)
|.+++|+|++. +|++|+.|++|+|||+.+++++..+.+|..+|++++|+|+|++|++++.||.|+|||..
T Consensus 251 v~~~~~sp~~~---------~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 251 VLNVAFCPDDT---------HFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp EEEEEECTTSS---------EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred eEEEEECCCCC---------EEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 99999999875 79999999999999999999999999999999999999999999999999999999963
No 6
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.2e-44 Score=360.23 Aligned_cols=286 Identities=24% Similarity=0.414 Sum_probs=256.2
Q ss_pred ceeEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCC
Q 008496 207 DVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG 286 (563)
Q Consensus 207 ~~~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g 286 (563)
....|++|...|++++|+|++++|++|+.|++|+|||+.++.. +... ..+...|.+++|+|+|
T Consensus 47 ~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~-------------~~~~----~~~~~~v~~~~~s~~~ 109 (340)
T 1got_B 47 TRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNK-------------VHAI----PLRSSWVMTCAYAPSG 109 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCE-------------EEEE----ECSSSCEEEEEECTTS
T ss_pred hheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCc-------------ceEe----ecCCccEEEEEECCCC
Confidence 4568999999999999999999999999999999999876431 1111 1245679999999999
Q ss_pred CEEEEEeCCCeEEEEEcCC-----ceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeE
Q 008496 287 TLLATGSYDGQARIWSTNG-----DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTL 361 (563)
Q Consensus 287 ~~l~sg~~dg~i~vw~~~~-----~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~ 361 (563)
++|++|+.|+.+++|+... .....+.+|.+.|.++.|++++ .+++++.|++|++||+.++.....+..|...+.
T Consensus 110 ~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~ 188 (340)
T 1got_B 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVM 188 (340)
T ss_dssp SEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred CEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCC-cEEEEECCCcEEEEECCCCcEEEEEcCCCCceE
Confidence 9999999999999999754 2445688999999999999876 489999999999999999999999999999999
Q ss_pred EEecCCC-ceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecc--
Q 008496 362 DVDWRNN-VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLRE-- 438 (563)
Q Consensus 362 ~~~~~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~-- 438 (563)
++.|.++ ..+++++.|+.|++|++....++..+.+|...|++++|+|++++|++|+.|++|++||++++..+..+..
T Consensus 189 ~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~ 268 (340)
T 1got_B 189 SLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDN 268 (340)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTT
T ss_pred EEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCC
Confidence 9999765 4678999999999999999999999999999999999999999999999999999999999887766542
Q ss_pred cCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 008496 439 HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIW 518 (563)
Q Consensus 439 ~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw 518 (563)
+...|.+++|+|++. +|++|+.||.|++||+.+++.+..+.+|..+|++++|+|+|.+||+|+.||.|+||
T Consensus 269 ~~~~v~~~~~s~~g~---------~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iW 339 (340)
T 1got_B 269 IICGITSVSFSKSGR---------LLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339 (340)
T ss_dssp CCSCEEEEEECTTSS---------EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred cccceEEEEECCCCC---------EEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEec
Confidence 335799999999886 79999999999999999999999999999999999999999999999999999999
Q ss_pred e
Q 008496 519 S 519 (563)
Q Consensus 519 ~ 519 (563)
|
T Consensus 340 d 340 (340)
T 1got_B 340 N 340 (340)
T ss_dssp C
T ss_pred C
Confidence 6
No 7
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=3.3e-44 Score=383.18 Aligned_cols=325 Identities=30% Similarity=0.549 Sum_probs=290.3
Q ss_pred CCCceeEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEEC
Q 008496 204 PNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWN 283 (563)
Q Consensus 204 ~~~~~~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s 283 (563)
....+..+.+|...|.+++|+|++++|++++.|+.+++|+.... .+..+ ..+...|++++|+
T Consensus 251 ~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~--------------~~~~~----~~h~~~v~~~~~~ 312 (577)
T 2ymu_A 251 NGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQ--------------LLQTL----TGHSSSVWGVAFS 312 (577)
T ss_dssp TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC--------------EEEEE----CCCSSCEEEEEEC
T ss_pred CCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCc--------------EEEEE----ecCCCCeEEEEEC
Confidence 33456678899999999999999999999999999999996421 11112 2346789999999
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEE
Q 008496 284 GEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 363 (563)
Q Consensus 284 ~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~ 363 (563)
|++.+|++++.||.|++|+.++.....+.+|..+|.+++|+|++++|++++.|+++++||. +++....+..|..++.++
T Consensus 313 ~~~~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~ 391 (577)
T 2ymu_A 313 PDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGV 391 (577)
T ss_dssp TTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEE
T ss_pred CCCCEEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEE
Confidence 9999999999999999999998888889999999999999999999999999999999995 567778888899999999
Q ss_pred ecCCC-ceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCC
Q 008496 364 DWRNN-VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKE 442 (563)
Q Consensus 364 ~~~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~ 442 (563)
.|.++ ..+++++.|+.|++|+. ..+.+..+.+|...|.+++|+|++++|++++.|++|++||. +++.+..+..|...
T Consensus 392 ~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~ 469 (577)
T 2ymu_A 392 AFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSS 469 (577)
T ss_dssp EECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSC
T ss_pred EECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCC
Confidence 98754 56788999999999996 45677889999999999999999999999999999999996 45677888999999
Q ss_pred EEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 008496 443 IYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKE 522 (563)
Q Consensus 443 i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~ 522 (563)
|.+++|+|++. +|++++.|++|++||. +++++..+.+|..+|++++|+|||++||+|+.||.|+|||. +
T Consensus 470 v~~~~~spd~~---------~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~ 538 (577)
T 2ymu_A 470 VRGVAFSPDGQ---------TIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-N 538 (577)
T ss_dssp EEEEEECTTSC---------EEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-T
T ss_pred EEEEEEcCCCC---------EEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-C
Confidence 99999999886 7999999999999995 68889999999999999999999999999999999999996 6
Q ss_pred CeeEEEEecC-CCEEEEEEcCCCCEEEEEECCCeEEEEE
Q 008496 523 GKIVKTYTGN-GGIFEVCWNKEGDKIAACFANHTVCVLD 560 (563)
Q Consensus 523 ~~~~~~~~~~-~~i~~l~w~~~g~~la~~~~~~~v~v~~ 560 (563)
++++.++.++ +.|.+++|+|||++|++++.|++|.|||
T Consensus 539 ~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 539 GQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp SCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 7888888764 5799999999999999999999999997
No 8
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.2e-44 Score=362.08 Aligned_cols=288 Identities=24% Similarity=0.418 Sum_probs=256.4
Q ss_pred CceeEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCC
Q 008496 206 SDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE 285 (563)
Q Consensus 206 ~~~~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~ 285 (563)
.....|.+|...|++++|+|++++||||+.|++|+|||..++... ... ..+...|.+++|+|+
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~-------------~~~----~~~~~~v~~~~~sp~ 117 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKE-------------HAV----TMPCTWVMACAYAPS 117 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE-------------EEE----ECSSSCCCEEEECTT
T ss_pred EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcc-------------eEE----ecCCCCEEEEEECCC
Confidence 345788999999999999999999999999999999997654310 111 123467999999999
Q ss_pred CCEEEEEeCCCeEEEEEcCC-------ceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeeccc
Q 008496 286 GTLLATGSYDGQARIWSTNG-------DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSG 358 (563)
Q Consensus 286 g~~l~sg~~dg~i~vw~~~~-------~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~ 358 (563)
|.+|++|+.|+.+++|+... .....+..|...|.++.|+|++..|++++.|++|++||+++++....+..|..
T Consensus 118 g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~ 197 (354)
T 2pbi_B 118 GCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGA 197 (354)
T ss_dssp SSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSS
T ss_pred CCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCC
Confidence 99999999999999998642 23456778999999999999999999999999999999999999999999999
Q ss_pred CeEEEecCC---CceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeee
Q 008496 359 PTLDVDWRN---NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHD 435 (563)
Q Consensus 359 ~~~~~~~~~---~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~ 435 (563)
.+..+.+.. ...+++++.|+.|++|++...+++..+.+|...|++++|+|++.+|++|+.|++|++||++..+.+..
T Consensus 198 ~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~ 277 (354)
T 2pbi_B 198 DVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAI 277 (354)
T ss_dssp CEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred CeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEE
Confidence 998888754 36899999999999999999999999999999999999999999999999999999999998877665
Q ss_pred eccc--CCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCC
Q 008496 436 LREH--SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDK 513 (563)
Q Consensus 436 ~~~~--~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg 513 (563)
+..+ ...+.+++|+|++. +|++|+.|++|++||+.+++.+..+.+|..+|++++|+|||++||+|+.||
T Consensus 278 ~~~~~~~~~~~~~~~s~~g~---------~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~ 348 (354)
T 2pbi_B 278 YSKESIIFGASSVDFSLSGR---------LLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDH 348 (354)
T ss_dssp ECCTTCCSCEEEEEECTTSS---------EEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTS
T ss_pred EcCCCcccceeEEEEeCCCC---------EEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCC
Confidence 5433 34789999999885 799999999999999999999999999999999999999999999999999
Q ss_pred cEEEEe
Q 008496 514 SMHIWS 519 (563)
Q Consensus 514 ~v~iw~ 519 (563)
+|+||+
T Consensus 349 ~v~vW~ 354 (354)
T 2pbi_B 349 TLRVWA 354 (354)
T ss_dssp EEEEEC
T ss_pred CEEecC
Confidence 999996
No 9
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.5e-44 Score=353.60 Aligned_cols=290 Identities=23% Similarity=0.353 Sum_probs=249.3
Q ss_pred eeEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCC
Q 008496 208 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 287 (563)
Q Consensus 208 ~~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~ 287 (563)
..+|.+|.+.|++++|+|++++||+|+.||+|++||+.++.. +..+. .+..+|.+++|+|+++
T Consensus 6 ~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~-------------~~~~~----~~~~~v~~~~~~~~~~ 68 (304)
T 2ynn_A 6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVE-------------VRSIQ----VTETPVRAGKFIARKN 68 (304)
T ss_dssp EEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE-------------EEEEE----CCSSCEEEEEEEGGGT
T ss_pred EEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCce-------------eEEee----ccCCcEEEEEEeCCCC
Confidence 467899999999999999999999999999999999876431 11221 2456799999999999
Q ss_pred EEEEEeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecC
Q 008496 288 LLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR 366 (563)
Q Consensus 288 ~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 366 (563)
+|++|+.|+.|++|+.. +.....+.+|...|.+++|+|++++|++|+.|++|++||++++..
T Consensus 69 ~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~----------------- 131 (304)
T 2ynn_A 69 WIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA----------------- 131 (304)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTE-----------------
T ss_pred EEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcc-----------------
Confidence 99999999999999975 567778999999999999999999999999999999999875421
Q ss_pred CCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECC-CCCEEEEEeCCCcEEEEeCCCCceeeeec-ccCCCEE
Q 008496 367 NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP-TGSLLASCSDDVTAKIWNMKQDKYVHDLR-EHSKEIY 444 (563)
Q Consensus 367 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~-~~~~las~s~dg~i~iwd~~~~~~~~~~~-~~~~~i~ 444 (563)
....+.+|...|.+++|+| ++.+|++|+.|++|++||+++......+. .|...+.
T Consensus 132 -----------------------~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~ 188 (304)
T 2ynn_A 132 -----------------------LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVN 188 (304)
T ss_dssp -----------------------EEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEE
T ss_pred -----------------------hhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEE
Confidence 1235678999999999999 67899999999999999998777655554 4567899
Q ss_pred EEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCe
Q 008496 445 TIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGK 524 (563)
Q Consensus 445 ~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~ 524 (563)
.+.|+|.... .+|++|+.|++|++||+++++++..+.+|..+|.+++|+|++++|++|+.||+|+|||+.+++
T Consensus 189 ~~~~~~~~~~-------~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~ 261 (304)
T 2ynn_A 189 YVDYYPLPDK-------PYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYK 261 (304)
T ss_dssp EEEECCSTTC-------CEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCC
T ss_pred EEEEEEcCCC-------CEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCc
Confidence 9999885321 279999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEecC-CCEEEEEEcCCCC--EEEEEECCCeEEEEEee
Q 008496 525 IVKTYTGN-GGIFEVCWNKEGD--KIAACFANHTVCVLDFR 562 (563)
Q Consensus 525 ~~~~~~~~-~~i~~l~w~~~g~--~la~~~~~~~v~v~~~~ 562 (563)
+++++..+ ..+.+++|+|+|. .||+|+.|| +.+|++.
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g-~~~~~~~ 301 (304)
T 2ynn_A 262 VEKTLNVGLERSWCIATHPTGRKNYIASGFDNG-FTVLSLG 301 (304)
T ss_dssp EEEEECCSSSSEEEEEECTTCGGGCEEEEETTE-EEEEECC
T ss_pred eeeeccCCCccEEEEEECCCCCceEEEEecCCc-eEEEEec
Confidence 99998764 5789999999985 577777664 6677653
No 10
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=4.7e-44 Score=352.57 Aligned_cols=282 Identities=21% Similarity=0.376 Sum_probs=259.0
Q ss_pred cCCCCeEEEEECCC----CCEEEEEeCCCeEEEEEcCCc---eeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEEC
Q 008496 272 EKSKDVTTLDWNGE----GTLLATGSYDGQARIWSTNGD---LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDV 344 (563)
Q Consensus 272 ~~~~~V~~l~~s~~----g~~l~sg~~dg~i~vw~~~~~---~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~ 344 (563)
.|...|++++|+|+ +.+|++|+.|+.|+||+.... ....+.+|..+|.+++|++++..+++++.|++|++||+
T Consensus 30 ~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~ 109 (321)
T 3ow8_A 30 AHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDL 109 (321)
T ss_dssp SSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEET
T ss_pred cCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence 46788999999984 679999999999999997543 33468899999999999999999999999999999999
Q ss_pred CCCceeEEeeecccCeEEEecCCC-ceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEE
Q 008496 345 KTEEWKQQFEFHSGPTLDVDWRNN-VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAK 423 (563)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~ 423 (563)
.+++....+..+...+..+.|.++ ..+++++.++.|++|++...+....+..|...|.+++|+|++++||+|+.|+.|+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~ 189 (321)
T 3ow8_A 110 ENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIIN 189 (321)
T ss_dssp TTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred CCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEE
Confidence 999998888888888888888655 5678889999999999999998889999999999999999999999999999999
Q ss_pred EEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCC
Q 008496 424 IWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTG 503 (563)
Q Consensus 424 iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg 503 (563)
+||+.+++.+..+.+|...|.+++|+|++. +|++|+.|++|+|||++.++++..+.+|..+|.+++|+|++
T Consensus 190 iwd~~~~~~~~~~~~h~~~v~~l~~spd~~---------~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~ 260 (321)
T 3ow8_A 190 IFDIATGKLLHTLEGHAMPIRSLTFSPDSQ---------LLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDD 260 (321)
T ss_dssp EEETTTTEEEEEECCCSSCCCEEEECTTSC---------EEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS
T ss_pred EEECCCCcEEEEEcccCCceeEEEEcCCCC---------EEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCC
Confidence 999999999999999999999999999875 79999999999999999999999999999999999999999
Q ss_pred CEEEEEeCCCcEEEEecCCCeeEEEEecC-CCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496 504 EYLASGSLDKSMHIWSLKEGKIVKTYTGN-GGIFEVCWNKEGDKIAACFANHTVCVLDFR 562 (563)
Q Consensus 504 ~~lasgs~dg~v~iw~~~~~~~~~~~~~~-~~i~~l~w~~~g~~la~~~~~~~v~v~~~~ 562 (563)
++|++|+.|++|+|||+.+++++.++.++ ..|.+++|+|+|++|++++.|+.|.|||+.
T Consensus 261 ~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 261 THFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred CEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 99999999999999999999999998654 579999999999999999999999999974
No 11
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.6e-43 Score=351.92 Aligned_cols=280 Identities=21% Similarity=0.371 Sum_probs=257.1
Q ss_pred cCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCc--
Q 008496 272 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE-- 348 (563)
Q Consensus 272 ~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~-- 348 (563)
.|...|++++|+|++++|++|+.||.|++|+.. +.....+..|...|.+++|+|++++|++|+.|+.+++||+.+..
T Consensus 53 gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~ 132 (340)
T 1got_B 53 GHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGN 132 (340)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBS
T ss_pred CCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCc
Confidence 346789999999999999999999999999965 56667888999999999999999999999999999999997653
Q ss_pred --eeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEe
Q 008496 349 --WKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWN 426 (563)
Q Consensus 349 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd 426 (563)
....+..|...+.++.|.++..+++++.|+.|++|++.+..++..+.+|.+.|.+++|+|++++|++|+.|++|++||
T Consensus 133 ~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd 212 (340)
T 1got_B 133 VRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD 212 (340)
T ss_dssp CEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred ceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEE
Confidence 455677888899999998888899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecC--CCCCEEEEEEcCCCC
Q 008496 427 MKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG--HREPVYSLAFSPTGE 504 (563)
Q Consensus 427 ~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--h~~~i~~l~~spdg~ 504 (563)
++++.++..+.+|...|.+++|+|++. +|++|+.||+|++||++.++.+..+.. +...|++++|+|+|+
T Consensus 213 ~~~~~~~~~~~~h~~~v~~v~~~p~~~---------~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~ 283 (340)
T 1got_B 213 VREGMCRQTFTGHESDINAICFFPNGN---------AFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR 283 (340)
T ss_dssp TTTCSEEEEECCCSSCEEEEEECTTSS---------EEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSS
T ss_pred CCCCeeEEEEcCCcCCEEEEEEcCCCC---------EEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCC
Confidence 999999999999999999999999875 799999999999999999988877653 335799999999999
Q ss_pred EEEEEeCCCcEEEEecCCCeeEEEEecC-CCEEEEEEcCCCCEEEEEECCCeEEEEE
Q 008496 505 YLASGSLDKSMHIWSLKEGKIVKTYTGN-GGIFEVCWNKEGDKIAACFANHTVCVLD 560 (563)
Q Consensus 505 ~lasgs~dg~v~iw~~~~~~~~~~~~~~-~~i~~l~w~~~g~~la~~~~~~~v~v~~ 560 (563)
+|++|+.||.|++||+.+++.+..+.++ ..|.+++|+|+|+.||+|+.|+.|.|||
T Consensus 284 ~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 284 LLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 9999999999999999999988888764 5799999999999999999999999997
No 12
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=2.2e-43 Score=347.76 Aligned_cols=289 Identities=27% Similarity=0.469 Sum_probs=248.8
Q ss_pred eEecCCCCceEEEEECCCC-CEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCC
Q 008496 209 TILEGHTSEVCACAWSPAG-SLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 287 (563)
Q Consensus 209 ~~l~~h~~~V~~~~~sp~~-~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~ 287 (563)
.+|.+|.+.|++++|+|++ ++|+||+.|++|++|++...... ....+..+ ..|...|++++|+|+|+
T Consensus 11 ~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~--------~~~~~~~~----~~h~~~v~~~~~s~dg~ 78 (319)
T 3frx_A 11 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQK--------FGVPVRSF----KGHSHIVQDCTLTADGA 78 (319)
T ss_dssp EEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTE--------EEEEEEEE----ECCSSCEEEEEECTTSS
T ss_pred EEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCcc--------ccccceEE----eCCcccEEEEEECCCCC
Confidence 4689999999999999975 89999999999999998532110 01112222 24567899999999999
Q ss_pred EEEEEeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecC
Q 008496 288 LLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR 366 (563)
Q Consensus 288 ~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 366 (563)
+|++|+.||.|++||.. +.....+.+|..+|.+++|+|++.+|++|+.|++|++||++..
T Consensus 79 ~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~------------------- 139 (319)
T 3frx_A 79 YALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ------------------- 139 (319)
T ss_dssp EEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSC-------------------
T ss_pred EEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-------------------
Confidence 99999999999999975 5667788999999999999999999999999999999998532
Q ss_pred CCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCC------CCEEEEEeCCCcEEEEeCCCCceeeeecccC
Q 008496 367 NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT------GSLLASCSDDVTAKIWNMKQDKYVHDLREHS 440 (563)
Q Consensus 367 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~------~~~las~s~dg~i~iwd~~~~~~~~~~~~~~ 440 (563)
.+..+.+|...|.+++|+|. +.+|++++.|++|++||+++.+....+.+|.
T Consensus 140 -----------------------~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~ 196 (319)
T 3frx_A 140 -----------------------CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHN 196 (319)
T ss_dssp -----------------------EEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCC
T ss_pred -----------------------eEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCC
Confidence 12345678888999999885 4589999999999999999999988999999
Q ss_pred CCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 008496 441 KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSL 520 (563)
Q Consensus 441 ~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~ 520 (563)
..|.+++|+|++. +|++|+.||+|+|||+.+++++..+..+ .+|.+++|+|++.+|++++.++ +++|++
T Consensus 197 ~~v~~~~~sp~g~---------~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~sp~~~~la~~~~~~-i~v~~~ 265 (319)
T 3frx_A 197 SNINTLTASPDGT---------LIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFSLAFSPNRYWLAAATATG-IKVFSL 265 (319)
T ss_dssp SCEEEEEECTTSS---------EEEEEETTCEEEEEETTTTEEEEEEECC-SCEEEEEECSSSSEEEEEETTE-EEEEEE
T ss_pred CcEEEEEEcCCCC---------EEEEEeCCCeEEEEECCCCcEEEEecCC-CcEEEEEEcCCCCEEEEEcCCC-cEEEEe
Confidence 9999999999886 7999999999999999999999998855 6899999999999999988665 999999
Q ss_pred CCCeeEEEEec---------CCCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496 521 KEGKIVKTYTG---------NGGIFEVCWNKEGDKIAACFANHTVCVLDFR 562 (563)
Q Consensus 521 ~~~~~~~~~~~---------~~~i~~l~w~~~g~~la~~~~~~~v~v~~~~ 562 (563)
..+.++..+.. ...+.+++|+|||++|++|+.|+.|.|||+.
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~ 316 (319)
T 3frx_A 266 DPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVM 316 (319)
T ss_dssp TTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred CcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEe
Confidence 98887777642 3458899999999999999999999999985
No 13
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=3.2e-44 Score=356.64 Aligned_cols=293 Identities=20% Similarity=0.302 Sum_probs=234.5
Q ss_pred CCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEE
Q 008496 213 GHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATG 292 (563)
Q Consensus 213 ~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg 292 (563)
.|...|.+++|+|||++|++++ |+++|+|+........ ....+... .......+...|++++|+|++ .|++|
T Consensus 28 ~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~-~~~~~~~~-----~~~~~~~~~~~v~~~~~s~d~-~l~~~ 99 (344)
T 4gqb_B 28 CMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKD-PCAAPNEG-----FCSAGVQTEAGVADLTWVGER-GILVA 99 (344)
T ss_dssp SCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESS-GGGTTCGG-----GCSEEEEESSCEEEEEEETTT-EEEEE
T ss_pred cccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeecc-ccccCCcc-----eeeeeeccCCCEEEEEEeCCC-eEEEE
Confidence 4667899999999999999887 8889999732100000 00000000 000001123569999999985 68899
Q ss_pred eCCCeEEEEEcCC-ce----eEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCC
Q 008496 293 SYDGQARIWSTNG-DL----KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN 367 (563)
Q Consensus 293 ~~dg~i~vw~~~~-~~----~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 367 (563)
+.||.|+|||... +. ...+.+|.+.|++++|+|+|++|++|+.|++|++||+.+++.
T Consensus 100 s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~------------------ 161 (344)
T 4gqb_B 100 SDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVV------------------ 161 (344)
T ss_dssp ETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE------------------
T ss_pred ECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcE------------------
Confidence 9999999999763 32 234568999999999999999999999999999999987643
Q ss_pred CceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCC-EEEEEeCCCcEEEEeCCCCceeeeec--ccCCCEE
Q 008496 368 NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGS-LLASCSDDVTAKIWNMKQDKYVHDLR--EHSKEIY 444 (563)
Q Consensus 368 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~-~las~s~dg~i~iwd~~~~~~~~~~~--~~~~~i~ 444 (563)
+..+.+|.+.|.+++|+|++. +|++|+.|++|++||+++++....+. .|...+.
T Consensus 162 -----------------------~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~ 218 (344)
T 4gqb_B 162 -----------------------LSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPT 218 (344)
T ss_dssp -----------------------EEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEE
T ss_pred -----------------------EEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccce
Confidence 345678999999999999984 78999999999999999998887764 4556799
Q ss_pred EEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEecCCC
Q 008496 445 TIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTG-EYLASGSLDKSMHIWSLKEG 523 (563)
Q Consensus 445 ~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg-~~lasgs~dg~v~iw~~~~~ 523 (563)
+++|+|.+. .+|++|+.||+|+|||+++++++..+.+|..+|++++|+|+| ++||+|+.|++|+|||+.++
T Consensus 219 ~~~~~p~~~--------~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~ 290 (344)
T 4gqb_B 219 SLAWHPQQS--------EVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLS 290 (344)
T ss_dssp EEEECSSCT--------TEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCC
T ss_pred eeeecCCCC--------cceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCC
Confidence 999998653 278999999999999999999999999999999999999998 68999999999999999999
Q ss_pred eeEEEEecCCCEEEEEEcCCCC-EEEEEECCCeEEEEEee
Q 008496 524 KIVKTYTGNGGIFEVCWNKEGD-KIAACFANHTVCVLDFR 562 (563)
Q Consensus 524 ~~~~~~~~~~~i~~l~w~~~g~-~la~~~~~~~v~v~~~~ 562 (563)
+++....+.+.|++++|+|+|+ .||+|+.|++|.+|++.
T Consensus 291 ~~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~ 330 (344)
T 4gqb_B 291 ELFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVP 330 (344)
T ss_dssp EEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC
T ss_pred cEEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECC
Confidence 8876544567899999999986 67788999999999975
No 14
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=8e-45 Score=367.10 Aligned_cols=292 Identities=25% Similarity=0.474 Sum_probs=253.9
Q ss_pred ceeEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCC
Q 008496 207 DVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG 286 (563)
Q Consensus 207 ~~~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g 286 (563)
...+|.+|.+.|++++|+|++++||||+.|++|+|||+.++.. ...+. .+...|.+++|+|+|
T Consensus 58 ~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~-------------~~~~~----~h~~~v~~~~~s~~g 120 (380)
T 3iz6_a 58 CCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQK-------------THAIK----LHCPWVMECAFAPNG 120 (380)
T ss_dssp EEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEE-------------EEEEE----CCCTTCCCCEECTTS
T ss_pred EeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcc-------------ceEEe----cCCCCEEEEEECCCC
Confidence 3467899999999999999999999999999999999875431 11121 245679999999999
Q ss_pred CEEEEEeCCCeEEEEEcCCc--------eeEeeccCCCCEEEEEeCCCC-CEEEEeeCCCcEEEEECCCCceeEEe----
Q 008496 287 TLLATGSYDGQARIWSTNGD--------LKCTLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTEEWKQQF---- 353 (563)
Q Consensus 287 ~~l~sg~~dg~i~vw~~~~~--------~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~D~~v~iwd~~~~~~~~~~---- 353 (563)
++|++|+.|+.+++|+.... ....+.+|.+.|.++.|+|++ ..|++|+.|++|++||+.++.....+
T Consensus 121 ~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~ 200 (380)
T 3iz6_a 121 QSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEF 200 (380)
T ss_dssp SEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCS
T ss_pred CEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeeccc
Confidence 99999999999999997531 334678999999999999974 57999999999999999999888776
Q ss_pred -eecccCeEEEecC--CCceEEEEeCCCeEEEEEcC-CCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCC
Q 008496 354 -EFHSGPTLDVDWR--NNVSFATSSTDNMIYVCKIG-ENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ 429 (563)
Q Consensus 354 -~~~~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~-~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~ 429 (563)
..|...+..+.|. +...|++++.|+.|++|++. ...++..+.+|.+.|++++|+|++++|++|+.|++|++||+++
T Consensus 201 ~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~ 280 (380)
T 3iz6_a 201 PSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRT 280 (380)
T ss_dssp SSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTT
T ss_pred CCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCC
Confidence 4577788888875 45788999999999999997 4577889999999999999999999999999999999999999
Q ss_pred CceeeeecccC-------CCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEe----cCCCCCEEEEE
Q 008496 430 DKYVHDLREHS-------KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSL----NGHREPVYSLA 498 (563)
Q Consensus 430 ~~~~~~~~~~~-------~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~----~~h~~~i~~l~ 498 (563)
+..+..+..+. ..+++++|+|++. +|++|+.||.|++||+..++.+..+ .+|...|++++
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~---------~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~ 351 (380)
T 3iz6_a 281 GHQLQVYNREPDRNDNELPIVTSVAFSISGR---------LLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLG 351 (380)
T ss_dssp TEEEEEECCCCSSSCCSSCSCSEEEECSSSS---------EEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEE
T ss_pred CcEEEEecccccccccccCceEEEEECCCCC---------EEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEE
Confidence 98877765443 2488999999886 7899999999999999999988877 68999999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEecCCCe
Q 008496 499 FSPTGEYLASGSLDKSMHIWSLKEGK 524 (563)
Q Consensus 499 ~spdg~~lasgs~dg~v~iw~~~~~~ 524 (563)
|+|||++|++||.||+|+||++..++
T Consensus 352 ~s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 352 LSSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp ECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred ECCCCCEEEEeeCCCCEEEEecCCCc
Confidence 99999999999999999999997653
No 15
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=2e-43 Score=351.97 Aligned_cols=299 Identities=30% Similarity=0.509 Sum_probs=244.8
Q ss_pred eeEecCCCC-ceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCC
Q 008496 208 VTILEGHTS-EVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG 286 (563)
Q Consensus 208 ~~~l~~h~~-~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g 286 (563)
+..+.+|.. .|.+++|+|+|++||+|+.|++|+||++.++.. ..... ....|...|++++|+|+|
T Consensus 8 ~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~------------~~~~~--~~~~h~~~v~~~~~sp~g 73 (345)
T 3fm0_A 8 LGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSW------------ICKSV--LSEGHQRTVRKVAWSPCG 73 (345)
T ss_dssp EEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEE------------EEEEE--ECSSCSSCEEEEEECTTS
T ss_pred eeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcc------------eeeee--eccccCCcEEEEEECCCC
Confidence 457889987 999999999999999999999999999865421 00110 112456789999999999
Q ss_pred CEEEEEeCCCeEEEEEcCCc---eeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCc---eeEEeeecccCe
Q 008496 287 TLLATGSYDGQARIWSTNGD---LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE---WKQQFEFHSGPT 360 (563)
Q Consensus 287 ~~l~sg~~dg~i~vw~~~~~---~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~---~~~~~~~~~~~~ 360 (563)
++|++|+.|+.+++|+.... ....+.+|..+|.+++|+|++++|++|+.|++|++||+.++. +...+..|...+
T Consensus 74 ~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v 153 (345)
T 3fm0_A 74 NYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDV 153 (345)
T ss_dssp SEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCE
T ss_pred CEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCe
Confidence 99999999999999997643 456788999999999999999999999999999999997753 345667788899
Q ss_pred EEEecCCC-ceEEEEeCCCeEEEEEcCCCc--ceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCC-------
Q 008496 361 LDVDWRNN-VSFATSSTDNMIYVCKIGENR--PIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD------- 430 (563)
Q Consensus 361 ~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~--~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~------- 430 (563)
..+.|.++ ..+++++.|+.|++|+..... ++..+.+|...|.+++|+|++++|++|+.|++|+||+....
T Consensus 154 ~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~ 233 (345)
T 3fm0_A 154 KHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVA 233 (345)
T ss_dssp EEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCC
T ss_pred EEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccce
Confidence 99999754 578899999999999998764 45788999999999999999999999999999999996321
Q ss_pred --------ceeeeecc-cCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe---------EEEEecCCCC
Q 008496 431 --------KYVHDLRE-HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK---------LLYSLNGHRE 492 (563)
Q Consensus 431 --------~~~~~~~~-~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~---------~~~~~~~h~~ 492 (563)
.++..+.+ |...|++++|+|++. .|++++.|+.|++|+...+. ......+|..
T Consensus 234 ~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~---------~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~ 304 (345)
T 3fm0_A 234 CSGSDPSWKCICTLSGFHSRTIYDIAWCQLTG---------ALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQ 304 (345)
T ss_dssp CC---CEEEEEEEECSSCSSCEEEEEECTTTC---------CEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSS
T ss_pred eeccCCccceeEEecCCCCCcEEEEEEecCCC---------EEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccC
Confidence 22334444 888999999999875 68999999999999986542 1233468999
Q ss_pred CEEEEEEcCCC-CEEEEEeCCCcEEEEecCCCeeEEEE
Q 008496 493 PVYSLAFSPTG-EYLASGSLDKSMHIWSLKEGKIVKTY 529 (563)
Q Consensus 493 ~i~~l~~spdg-~~lasgs~dg~v~iw~~~~~~~~~~~ 529 (563)
.|++++|+|++ .+||+||.||+|++|++.+++.+..+
T Consensus 305 ~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~~~ 342 (345)
T 3fm0_A 305 DVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLHHH 342 (345)
T ss_dssp CEEEEEECSSSTTEEEEEETTSCEEEEEECC-------
T ss_pred cEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCcccc
Confidence 99999999998 59999999999999999987765443
No 16
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-43 Score=349.14 Aligned_cols=295 Identities=25% Similarity=0.419 Sum_probs=235.7
Q ss_pred eeEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCC
Q 008496 208 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 287 (563)
Q Consensus 208 ~~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~ 287 (563)
+..|.+|...|.+++|+|+ +||+|+.|++|+||++..+.. . ....+. ...|...|.+++|+|+++
T Consensus 7 ~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~---------~--~~~~~~--~~~h~~~v~~v~~sp~~~ 71 (330)
T 2hes_X 7 IKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDF---------T--LIDVLD--ETAHKKAIRSVAWRPHTS 71 (330)
T ss_dssp EEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCC---------E--EEEEEC--TTCCCSCEEEEEECTTSS
T ss_pred ceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCe---------E--EEEEEe--cCCccCCEEEEEECCCCC
Confidence 4678899999999999998 999999999999999865321 0 111110 112567899999999999
Q ss_pred EEEEEeCCCeEEEEEcC--------CceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccC
Q 008496 288 LLATGSYDGQARIWSTN--------GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGP 359 (563)
Q Consensus 288 ~l~sg~~dg~i~vw~~~--------~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~ 359 (563)
+|++|+.|+.|+||+.. ......+.+|..+|.+++|+|++++|++|+.|++|++||++....
T Consensus 72 ~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~---------- 141 (330)
T 2hes_X 72 LLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGE---------- 141 (330)
T ss_dssp EEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCC----------
T ss_pred EEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCC----------
Confidence 99999999999999974 234567889999999999999999999999999999999853210
Q ss_pred eEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCC--ceeeeec
Q 008496 360 TLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD--KYVHDLR 437 (563)
Q Consensus 360 ~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~--~~~~~~~ 437 (563)
...++..+.+|...|.+++|+|++.+|++|+.|++|++||..++ .++..+.
T Consensus 142 ---------------------------~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~ 194 (330)
T 2hes_X 142 ---------------------------EYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLN 194 (330)
T ss_dssp ---------------------------CCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEEC
T ss_pred ---------------------------CeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEcc
Confidence 01224557789999999999999999999999999999998766 5778889
Q ss_pred ccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC--------eEEEEecC-CCCCEEEEEEcCCCCEEEE
Q 008496 438 EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG--------KLLYSLNG-HREPVYSLAFSPTGEYLAS 508 (563)
Q Consensus 438 ~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~--------~~~~~~~~-h~~~i~~l~~spdg~~las 508 (563)
+|...|.+++|+|++.. .+|++|+.|++|++||+..+ .+...+.+ |..+|++++|+|++ +||+
T Consensus 195 ~h~~~v~~~~~~~~~~~-------~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s 266 (330)
T 2hes_X 195 GHEGTVWSSDFDKTEGV-------FRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIAS 266 (330)
T ss_dssp CCSSCEEEEEECCSSSS-------CEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEE
T ss_pred CCCCcEEEEEecCCCCe-------eEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEE
Confidence 99999999999997421 27899999999999998754 45556655 89999999999765 8999
Q ss_pred EeCCCcEEEEecCCCe--eEEEE-ecCC--CEEEEEEcC--CCCEEEEEECCCeEEEEEee
Q 008496 509 GSLDKSMHIWSLKEGK--IVKTY-TGNG--GIFEVCWNK--EGDKIAACFANHTVCVLDFR 562 (563)
Q Consensus 509 gs~dg~v~iw~~~~~~--~~~~~-~~~~--~i~~l~w~~--~g~~la~~~~~~~v~v~~~~ 562 (563)
|+.||.|+||+..++. ++... ..+. .|..++|+| +|+.||+|+.|++|.|||++
T Consensus 267 ~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~ 327 (330)
T 2hes_X 267 VGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLE 327 (330)
T ss_dssp EETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC-
T ss_pred EeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEec
Confidence 9999999999998874 33333 3333 699999999 78999999999999999985
No 17
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=4.9e-44 Score=357.95 Aligned_cols=288 Identities=19% Similarity=0.312 Sum_probs=239.0
Q ss_pred cCCCCceEEEEECCCCCEEEEeeC------CCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCC
Q 008496 212 EGHTSEVCACAWSPAGSLLASGSG------DSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE 285 (563)
Q Consensus 212 ~~h~~~V~~~~~sp~~~~latgs~------D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~ 285 (563)
..|...|++++|||||++||+||. |+.+++|+..++....... .....+...|++++|+|+
T Consensus 39 ~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~-------------~~~~~~~~~V~~~~~s~d 105 (357)
T 4g56_B 39 ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLC-------------TAGVQTEAGVTDVAWVSE 105 (357)
T ss_dssp -CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGC-------------SEEEECSSCEEEEEEETT
T ss_pred ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEe-------------cccCCCCCCEEEEEEcCC
Confidence 469999999999999999999998 6789999876543221110 111124567999999999
Q ss_pred CCEEEEEeCCCeEEEEEcCCc-e----eEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCe
Q 008496 286 GTLLATGSYDGQARIWSTNGD-L----KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPT 360 (563)
Q Consensus 286 g~~l~sg~~dg~i~vw~~~~~-~----~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~ 360 (563)
+. +++++.||.|+|||.... . .....+|.++|++++|+|++++|++|+.|++|++||+++++.
T Consensus 106 ~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~----------- 173 (357)
T 4g56_B 106 KG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAV----------- 173 (357)
T ss_dssp TE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEE-----------
T ss_pred CC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcE-----------
Confidence 86 556788999999997532 1 234558999999999999999999999999999999887643
Q ss_pred EEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCC-EEEEEeCCCcEEEEeCCCCceeeee--c
Q 008496 361 LDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGS-LLASCSDDVTAKIWNMKQDKYVHDL--R 437 (563)
Q Consensus 361 ~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~-~las~s~dg~i~iwd~~~~~~~~~~--~ 437 (563)
+..+.+|...|++++|+|++. ++++++.|++|++||+++++++..+ .
T Consensus 174 ------------------------------~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~ 223 (357)
T 4g56_B 174 ------------------------------LKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFC 223 (357)
T ss_dssp ------------------------------EEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCT
T ss_pred ------------------------------EEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeec
Confidence 234567889999999999875 7899999999999999988876544 4
Q ss_pred ccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCC-CEEEEEeCCCcEE
Q 008496 438 EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTG-EYLASGSLDKSMH 516 (563)
Q Consensus 438 ~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg-~~lasgs~dg~v~ 516 (563)
.|...+++++|+|++. .+|++|+.|+.|++||+++++++..+.+|..+|++++|+|++ ++||+|+.|++|+
T Consensus 224 ~~~~~v~~v~~sp~~~--------~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~ 295 (357)
T 4g56_B 224 ASDTIPTSVTWHPEKD--------DTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVA 295 (357)
T ss_dssp TCCSCEEEEEECTTST--------TEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEE
T ss_pred cccccccchhhhhccc--------ceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEE
Confidence 5677899999999753 278999999999999999999999999999999999999997 6899999999999
Q ss_pred EEecCCCeeEEEEecCCCEEEEEEcC-CCCEEEEEECCCeEEEEEee
Q 008496 517 IWSLKEGKIVKTYTGNGGIFEVCWNK-EGDKIAACFANHTVCVLDFR 562 (563)
Q Consensus 517 iw~~~~~~~~~~~~~~~~i~~l~w~~-~g~~la~~~~~~~v~v~~~~ 562 (563)
|||+++++++..+...+.|++++|+| ++++||+|+.|++|.|||+.
T Consensus 296 iwd~~~~~~~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~ 342 (357)
T 4g56_B 296 VLDADFSEVFRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLP 342 (357)
T ss_dssp EECTTSCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC
T ss_pred EEECCCCcEeEECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECC
Confidence 99999999988877778899999998 89999999999999999985
No 18
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.6e-42 Score=370.02 Aligned_cols=325 Identities=31% Similarity=0.561 Sum_probs=287.8
Q ss_pred CCceeEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECC
Q 008496 205 NSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG 284 (563)
Q Consensus 205 ~~~~~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~ 284 (563)
...+..+.+|...|.+++|+|++.+|++|+.|+.+++|+.... .+... ..+...|++++|+|
T Consensus 211 ~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~~--------------~~~~~----~~~~~~v~~v~~~~ 272 (577)
T 2ymu_A 211 GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ--------------LLQTL----TGHSSSVNGVAFRP 272 (577)
T ss_dssp SCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSC--------------EEEEE----CCCSSCEEEEEECT
T ss_pred CcEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCC--------------EEEEE----ecCCCCEEEEEEcC
Confidence 3445678899999999999999999999999999999995421 11112 23457899999999
Q ss_pred CCCEEEEEeCCCeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEe
Q 008496 285 EGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVD 364 (563)
Q Consensus 285 ~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~ 364 (563)
++++|++++.|+.+++|+.++.....+.+|..+|++++|+|++.+|++++.|++|++||+... ....+..|...+..+.
T Consensus 273 d~~~l~~~~~d~~i~~w~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~-~~~~~~~~~~~v~~~~ 351 (577)
T 2ymu_A 273 DGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ-HLQTLTGHSSSVWGVA 351 (577)
T ss_dssp TSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC-EEEEECCCSSCEEEEE
T ss_pred CCCEEEEEeCCCEEEEEeCCCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC-eeEEEeCCCCCEEEEE
Confidence 999999999999999999999988899999999999999999999999999999999997654 4456677888888898
Q ss_pred cCCC-ceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCE
Q 008496 365 WRNN-VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEI 443 (563)
Q Consensus 365 ~~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i 443 (563)
+.++ ..+++++.|+.|++|+. +.+.+..+.+|...|++++|+|++++|++++.|+.|++||. +++.+..+..|...|
T Consensus 352 ~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v 429 (577)
T 2ymu_A 352 FSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSV 429 (577)
T ss_dssp ECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCE
T ss_pred ECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCe
Confidence 8754 56788899999999996 45677888999999999999999999999999999999995 566778889999999
Q ss_pred EEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 008496 444 YTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEG 523 (563)
Q Consensus 444 ~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~ 523 (563)
++++|+|++. +|++++.|++|++||. +++.+..+.+|..+|++++|+|||++||+|+.|+.|++|+. ++
T Consensus 430 ~~~~~s~d~~---------~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~ 498 (577)
T 2ymu_A 430 WGVAFSPDDQ---------TIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NG 498 (577)
T ss_dssp EEEEECTTSS---------EEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TS
T ss_pred EEEEECCCCC---------EEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CC
Confidence 9999999875 7899999999999996 57788899999999999999999999999999999999995 67
Q ss_pred eeEEEEecC-CCEEEEEEcCCCCEEEEEECCCeEEEEEe
Q 008496 524 KIVKTYTGN-GGIFEVCWNKEGDKIAACFANHTVCVLDF 561 (563)
Q Consensus 524 ~~~~~~~~~-~~i~~l~w~~~g~~la~~~~~~~v~v~~~ 561 (563)
++++.+.++ ..|.+++|+|+|++||+++.|+.|+|||.
T Consensus 499 ~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~ 537 (577)
T 2ymu_A 499 QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR 537 (577)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT
T ss_pred CEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC
Confidence 888888764 57999999999999999999999999984
No 19
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1.1e-41 Score=337.34 Aligned_cols=321 Identities=17% Similarity=0.258 Sum_probs=277.0
Q ss_pred CCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEe
Q 008496 214 HTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS 293 (563)
Q Consensus 214 h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~ 293 (563)
|..+|.+++|+|+|++++++..++.+.+|..... ...... ..+...|++++|+|++++|++++
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~------------~~~~~~-----~~h~~~v~~~~~~~~~~~l~~~~ 70 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRH------------ARQINT-----LNHGEVVCAVTISNPTRHVYTGG 70 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSE------------EEEEEE-----ECCSSCCCEEEECSSSSEEEEEC
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCc------------ccccee-----ccCCCceEEEEEecCCcEEEEcC
Confidence 4567999999999999999887776666643211 111111 13567899999999999999999
Q ss_pred CCCeEEEEEcCCc----eeEeec--cCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCc--eeEEeeecccCeEEEec
Q 008496 294 YDGQARIWSTNGD----LKCTLS--KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE--WKQQFEFHSGPTLDVDW 365 (563)
Q Consensus 294 ~dg~i~vw~~~~~----~~~~~~--~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~--~~~~~~~~~~~~~~~~~ 365 (563)
||.|++|+.... ....+. .|..+|.+++|+|++++|++++.|+.|++||+.+++ ....+..+...+.++.|
T Consensus 71 -dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~ 149 (337)
T 1gxr_A 71 -KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAI 149 (337)
T ss_dssp -BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEE
T ss_pred -CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEE
Confidence 999999997642 222333 799999999999999999999999999999999877 55566778888999999
Q ss_pred CCC-ceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEE
Q 008496 366 RNN-VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIY 444 (563)
Q Consensus 366 ~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~ 444 (563)
.++ ..+++++.|+.|++|++...+++..+.+|...|.+++|+|++++|++++.|+.|++||+++++.+..+ .+...+.
T Consensus 150 ~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~-~~~~~v~ 228 (337)
T 1gxr_A 150 SPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH-DFTSQIF 228 (337)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-ECSSCEE
T ss_pred CCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeee-cCCCceE
Confidence 755 56788999999999999999999999999999999999999999999999999999999999887765 4778899
Q ss_pred EEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCe
Q 008496 445 TIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGK 524 (563)
Q Consensus 445 ~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~ 524 (563)
+++|+|++. +|++++.|+.|++||+..++. ..+..|..+|.+++|+|++++|++++.||.|++|++.+++
T Consensus 229 ~~~~s~~~~---------~l~~~~~~~~i~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~ 298 (337)
T 1gxr_A 229 SLGYCPTGE---------WLAVGMESSNVEVLHVNKPDK-YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA 298 (337)
T ss_dssp EEEECTTSS---------EEEEEETTSCEEEEETTSSCE-EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred EEEECCCCC---------EEEEEcCCCcEEEEECCCCCe-EEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCe
Confidence 999999875 788999999999999998775 4677899999999999999999999999999999999999
Q ss_pred eEEEEecCCCEEEEEEcCCCCEEEEEECCCeEEEEEeeC
Q 008496 525 IVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFRM 563 (563)
Q Consensus 525 ~~~~~~~~~~i~~l~w~~~g~~la~~~~~~~v~v~~~~~ 563 (563)
.+........+.+++|+|+|++|++++.||.|.||++.+
T Consensus 299 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~ 337 (337)
T 1gxr_A 299 SIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEVIY 337 (337)
T ss_dssp EEEEEECSSCEEEEEECTTSCEEEEEETTSCEEEEEEEC
T ss_pred EEEEecCCCcEEEEEECCCCCEEEEecCCCeEEEEEEeC
Confidence 887777788899999999999999999999999999864
No 20
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.6e-41 Score=344.50 Aligned_cols=298 Identities=26% Similarity=0.479 Sum_probs=242.2
Q ss_pred CCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEee-ecccccCCCCeEEEEECCCCCEEEE
Q 008496 213 GHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHV-KGRTNEKSKDVTTLDWNGEGTLLAT 291 (563)
Q Consensus 213 ~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~V~~l~~s~~g~~l~s 291 (563)
+|...|++++|+|+|++||+|+ |++++||++.++................... ..........|++++|+|+|++|++
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s 140 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT 140 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence 6999999999999999999976 7899999998764321111000000000000 0000112235999999999999999
Q ss_pred EeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCCce
Q 008496 292 GSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVS 370 (563)
Q Consensus 292 g~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (563)
|+.||.|++||.. +.....+.+|..+|++++|+|++.+|++|+.|++|++||+++++....+
T Consensus 141 ~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~----------------- 203 (393)
T 1erj_A 141 GAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTL----------------- 203 (393)
T ss_dssp EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-----------------
T ss_pred EcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEE-----------------
Confidence 9999999999986 4566788999999999999999999999999999999999887543221
Q ss_pred EEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECC-CCCEEEEEeCCCcEEEEeCCCCceeeee-------cccCCC
Q 008496 371 FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP-TGSLLASCSDDVTAKIWNMKQDKYVHDL-------REHSKE 442 (563)
Q Consensus 371 ~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~-~~~~las~s~dg~i~iwd~~~~~~~~~~-------~~~~~~ 442 (563)
.+...+.+++|+| ++++|++|+.|++|++||++++..+..+ .+|...
T Consensus 204 -------------------------~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~ 258 (393)
T 1erj_A 204 -------------------------SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDS 258 (393)
T ss_dssp -------------------------ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSC
T ss_pred -------------------------EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCC
Confidence 1334678899999 8999999999999999999998877666 578999
Q ss_pred EEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC------------CeEEEEecCCCCCEEEEEEcCCCCEEEEEe
Q 008496 443 IYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL------------GKLLYSLNGHREPVYSLAFSPTGEYLASGS 510 (563)
Q Consensus 443 i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~------------~~~~~~~~~h~~~i~~l~~spdg~~lasgs 510 (563)
|++++|+|++. +|++|+.||+|++||++. +.+...+.+|...|.+++|+|++.+|++|+
T Consensus 259 v~~v~~~~~g~---------~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs 329 (393)
T 1erj_A 259 VYSVVFTRDGQ---------SVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGS 329 (393)
T ss_dssp EEEEEECTTSS---------EEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEE
T ss_pred EEEEEECCCCC---------EEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEe
Confidence 99999999875 789999999999999875 345667889999999999999999999999
Q ss_pred CCCcEEEEecCCCeeEEEEecC-CCEEEEEEcC------CCCEEEEEECCCeEEEEEee
Q 008496 511 LDKSMHIWSLKEGKIVKTYTGN-GGIFEVCWNK------EGDKIAACFANHTVCVLDFR 562 (563)
Q Consensus 511 ~dg~v~iw~~~~~~~~~~~~~~-~~i~~l~w~~------~g~~la~~~~~~~v~v~~~~ 562 (563)
.|+.|++||+.+++.+..+.++ ..|.+++|++ +++.||+|+.|++|.||+++
T Consensus 330 ~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~ 388 (393)
T 1erj_A 330 KDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 388 (393)
T ss_dssp TTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred CCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccc
Confidence 9999999999999999888764 5699999886 78999999999999999986
No 21
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=2e-41 Score=338.72 Aligned_cols=280 Identities=20% Similarity=0.385 Sum_probs=252.6
Q ss_pred cCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCC---
Q 008496 272 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE--- 347 (563)
Q Consensus 272 ~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~--- 347 (563)
.|...|++++|+|++++|++|+.||.|++|+.. +.....+..|...|.+++|+|+|.+|++|+.|+.+++|++...
T Consensus 62 gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~ 141 (354)
T 2pbi_B 62 GHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNE 141 (354)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTC
T ss_pred CCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccc
Confidence 356789999999999999999999999999964 5566678889999999999999999999999999999998643
Q ss_pred ---ceeEEeeecccCeEEEecCCC-ceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECC--CCCEEEEEeCCCc
Q 008496 348 ---EWKQQFEFHSGPTLDVDWRNN-VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP--TGSLLASCSDDVT 421 (563)
Q Consensus 348 ---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~--~~~~las~s~dg~ 421 (563)
.....+..|...+..+.|.++ ..+++++.|++|++|++...+++..+.+|...|.+++|+| ++++|++|+.||+
T Consensus 142 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~ 221 (354)
T 2pbi_B 142 NMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKK 221 (354)
T ss_dssp CSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSC
T ss_pred cccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCe
Confidence 344567788889999999765 4789999999999999999999999999999999999987 5789999999999
Q ss_pred EEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCC--CCCEEEEEE
Q 008496 422 AKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH--REPVYSLAF 499 (563)
Q Consensus 422 i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h--~~~i~~l~~ 499 (563)
|++||+++++++..+..|...|.+++|+|++. +|++|+.|++|++||++.++.+..+..+ ...+.+++|
T Consensus 222 v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~---------~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~ 292 (354)
T 2pbi_B 222 AMVWDMRSGQCVQAFETHESDVNSVRYYPSGD---------AFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDF 292 (354)
T ss_dssp EEEEETTTCCEEEEECCCSSCEEEEEECTTSS---------EEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEE
T ss_pred EEEEECCCCcEEEEecCCCCCeEEEEEeCCCC---------EEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEE
Confidence 99999999999999999999999999999875 7999999999999999998887766543 457899999
Q ss_pred cCCCCEEEEEeCCCcEEEEecCCCeeEEEEecC-CCEEEEEEcCCCCEEEEEECCCeEEEEE
Q 008496 500 SPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN-GGIFEVCWNKEGDKIAACFANHTVCVLD 560 (563)
Q Consensus 500 spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~-~~i~~l~w~~~g~~la~~~~~~~v~v~~ 560 (563)
+|+|++|++|+.|+.|+|||+.+++.+..+.++ ..|.+++|+|+|++||+|+.|++|.||+
T Consensus 293 s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 293 SLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred eCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 999999999999999999999999988888654 5799999999999999999999999996
No 22
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.6e-44 Score=366.51 Aligned_cols=323 Identities=20% Similarity=0.383 Sum_probs=275.2
Q ss_pred CceEEEEECCCCC-EEEEe----------eCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECC
Q 008496 216 SEVCACAWSPAGS-LLASG----------SGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG 284 (563)
Q Consensus 216 ~~V~~~~~sp~~~-~latg----------s~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~ 284 (563)
..|.+++|+|+++ +||+| +.|+.|+||++.++..... .....+...|++++|+|
T Consensus 13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~---------------~~~~~~~~~v~~~~~s~ 77 (416)
T 2pm9_A 13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKP---------------IASLQVDSKFNDLDWSH 77 (416)
T ss_dssp EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSC---------------SCCCCCSSCEEEEEECS
T ss_pred hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcE---------------EEEEecCCceEEEEECC
Confidence 4688999999986 99999 8999999999976532100 00112456799999999
Q ss_pred CCCEEEEEeCCCeEEEEEcCC-----ceeEeeccCCCCEEEEEeCCC-CCEEEEeeCCCcEEEEECCCCc------eeE-
Q 008496 285 EGTLLATGSYDGQARIWSTNG-----DLKCTLSKHKGPIFSLKWNKK-GDYLLTGSCDKTAIVWDVKTEE------WKQ- 351 (563)
Q Consensus 285 ~g~~l~sg~~dg~i~vw~~~~-----~~~~~~~~h~~~V~~l~~~~~-~~~l~s~s~D~~v~iwd~~~~~------~~~- 351 (563)
++.+|++|+.||.|++|+... .....+.+|..+|++++|+|+ +++|++++.|++|++||+.++. ...
T Consensus 78 ~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~ 157 (416)
T 2pm9_A 78 NNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLT 157 (416)
T ss_dssp SSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBC
T ss_pred CCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccc
Confidence 999999999999999999875 467788899999999999998 8999999999999999998876 222
Q ss_pred --EeeecccCeEEEecCCC--ceEEEEeCCCeEEEEEcCCCcceeeecCC------CcceeEEEECCCC-CEEEEEeCCC
Q 008496 352 --QFEFHSGPTLDVDWRNN--VSFATSSTDNMIYVCKIGENRPIKTFAGH------QGEVNCVKWDPTG-SLLASCSDDV 420 (563)
Q Consensus 352 --~~~~~~~~~~~~~~~~~--~~~~~~~~d~~i~~~~~~~~~~~~~~~~h------~~~i~~~~~~~~~-~~las~s~dg 420 (563)
.+..|...+.++.|.++ ..+++++.|+.|++|++...+++..+..| ...|.+++|+|++ .+|++++.|+
T Consensus 158 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~ 237 (416)
T 2pm9_A 158 PGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSD 237 (416)
T ss_dssp CCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCS
T ss_pred cccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCC
Confidence 23557778889999765 67899999999999999999888888776 7889999999997 6899999999
Q ss_pred ---cEEEEeCCCC-ceeeeec-ccCCCEEEEEEcc-CCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCE
Q 008496 421 ---TAKIWNMKQD-KYVHDLR-EHSKEIYTIRWSP-TGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPV 494 (563)
Q Consensus 421 ---~i~iwd~~~~-~~~~~~~-~~~~~i~~~~~~p-~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i 494 (563)
.|++||+++. .++..+. .|...|++++|+| ++. +|++++.||.|++||+++++++..+.+|..+|
T Consensus 238 ~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~---------~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v 308 (416)
T 2pm9_A 238 NDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEH---------LLLSSGRDNTVLLWNPESAEQLSQFPARGNWC 308 (416)
T ss_dssp SSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSS---------CEEEEESSSEEEEECSSSCCEEEEEECSSSCC
T ss_pred CCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCC---------eEEEEeCCCCEEEeeCCCCccceeecCCCCce
Confidence 9999999986 5677777 8999999999999 554 68999999999999999999999999999999
Q ss_pred EEEEEcCCC-CEEEEEeCCCcEEEEecCCCeeEEEE---------------e---------------------cCCCEEE
Q 008496 495 YSLAFSPTG-EYLASGSLDKSMHIWSLKEGKIVKTY---------------T---------------------GNGGIFE 537 (563)
Q Consensus 495 ~~l~~spdg-~~lasgs~dg~v~iw~~~~~~~~~~~---------------~---------------------~~~~i~~ 537 (563)
++++|+|++ .+|++++.||.|+||++.+++..... . ....+..
T Consensus 309 ~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (416)
T 2pm9_A 309 FKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPA 388 (416)
T ss_dssp CCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCC
T ss_pred EEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccc
Confidence 999999999 89999999999999999876532111 0 1234568
Q ss_pred EEEcCCCCEEEEEECCCeEEEEEee
Q 008496 538 VCWNKEGDKIAACFANHTVCVLDFR 562 (563)
Q Consensus 538 l~w~~~g~~la~~~~~~~v~v~~~~ 562 (563)
++|+|+|++||+++.|+.|.||++.
T Consensus 389 ~~~s~dg~~la~~~~d~~v~~w~~~ 413 (416)
T 2pm9_A 389 AHWAFGGKLVQITPDGKGVSITNPK 413 (416)
T ss_dssp CEEETTTEEECBCTTSSCBCCBCCC
T ss_pred eEEeeCCeEEEEeCCCCeEEEEEec
Confidence 9999999999999999999999874
No 23
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=5.4e-42 Score=341.43 Aligned_cols=294 Identities=22% Similarity=0.334 Sum_probs=238.2
Q ss_pred ceeEecCCCCceEEEEE-----CC-CCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEE
Q 008496 207 DVTILEGHTSEVCACAW-----SP-AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTL 280 (563)
Q Consensus 207 ~~~~l~~h~~~V~~~~~-----sp-~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l 280 (563)
...+|.+|.+.|++++| +| ++++||||+.|++|++|++........ .......+ ..|...|+++
T Consensus 13 ~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~------~~~~~~~l----~~h~~~V~~~ 82 (343)
T 2xzm_R 13 KRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGY------FGIPHKAL----TGHNHFVSDL 82 (343)
T ss_dssp EEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSB------SEEEEEEE----CCCSSCEEEE
T ss_pred eeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccc------cccccchh----ccCCCceEEE
Confidence 34678999999999999 77 899999999999999999875421110 00111222 3456789999
Q ss_pred EECCCCCEEEEEeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEee---ec
Q 008496 281 DWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFE---FH 356 (563)
Q Consensus 281 ~~s~~g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~---~~ 356 (563)
+|+|++.+|++|+.|+.|++||.. +.....+.+|..+|++++|+|++++|++|+.|++|++||+.... ..... .|
T Consensus 83 ~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~~~~ 161 (343)
T 2xzm_R 83 ALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGEC-KFSSAEKENH 161 (343)
T ss_dssp EECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCE-EEECCTTTSC
T ss_pred EECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCc-eeeeecccCC
Confidence 999999999999999999999975 56677889999999999999999999999999999999997433 22222 46
Q ss_pred ccCeEEEecCCC-----------ceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEE
Q 008496 357 SGPTLDVDWRNN-----------VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIW 425 (563)
Q Consensus 357 ~~~~~~~~~~~~-----------~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iw 425 (563)
...+.++.|.+. ..+++++.|+.|++|+. .......+.+|...|++++|+|++++|++|+.|++|++|
T Consensus 162 ~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iw 240 (343)
T 2xzm_R 162 SDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIW 240 (343)
T ss_dssp SSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEE
T ss_pred CceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEE
Confidence 667888888654 46899999999999994 456677889999999999999999999999999999999
Q ss_pred eCCCCc-eeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEE--Eec-----------CCC
Q 008496 426 NMKQDK-YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLY--SLN-----------GHR 491 (563)
Q Consensus 426 d~~~~~-~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~--~~~-----------~h~ 491 (563)
|+.... ....+ .+...|.+++|+|++. +++ ++.|+.|++||+.+++... .+. +|.
T Consensus 241 d~~~~~~~~~~~-~~~~~v~~v~~sp~~~---------~la-~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (343)
T 2xzm_R 241 DILNLTYPQREF-DAGSTINQIAFNPKLQ---------WVA-VGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKN 309 (343)
T ss_dssp ESSCCSSCSEEE-ECSSCEEEEEECSSSC---------EEE-EEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSC
T ss_pred ECCCCcccceee-cCCCcEEEEEECCCCC---------EEE-EECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCC
Confidence 995433 33333 3556799999999864 454 5568899999998765432 443 688
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 008496 492 EPVYSLAFSPTGEYLASGSLDKSMHIWSLKEG 523 (563)
Q Consensus 492 ~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~ 523 (563)
..|++++|+|+|++||+|+.||.|++|++.++
T Consensus 310 ~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 310 PQCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp CCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred CceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 88999999999999999999999999998654
No 24
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=6e-41 Score=332.74 Aligned_cols=293 Identities=25% Similarity=0.383 Sum_probs=246.9
Q ss_pred eEecCCCCceEEEEECCC-CCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCC
Q 008496 209 TILEGHTSEVCACAWSPA-GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 287 (563)
Q Consensus 209 ~~l~~h~~~V~~~~~sp~-~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~ 287 (563)
.+|+||++.|++++|+|+ +++|||||.|++|+||++....... ......+ ..+...|++++|+|+|+
T Consensus 32 ~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~--------~~~~~~l----~~h~~~V~~~~~s~dg~ 99 (340)
T 4aow_A 32 GTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNY--------GIPQRAL----RGHSHFVSDVVISSDGQ 99 (340)
T ss_dssp EEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCS--------EEEEEEE----CCCSSCEEEEEECTTSS
T ss_pred EEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCccc--------ceeeEEE----eCCCCCEEEEEECCCCC
Confidence 478999999999999998 6899999999999999987643211 1112222 23567899999999999
Q ss_pred EEEEEeCCCeEEEEEcCCc-eeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCcee-EEeeecccCeEEEec
Q 008496 288 LLATGSYDGQARIWSTNGD-LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWK-QQFEFHSGPTLDVDW 365 (563)
Q Consensus 288 ~l~sg~~dg~i~vw~~~~~-~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~-~~~~~~~~~~~~~~~ 365 (563)
+|++|+.||.|++|+.... .......+...+..+.+++++.+|++|+.|+.+++||+...... .....|...+..+.|
T Consensus 100 ~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~ 179 (340)
T 4aow_A 100 FALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRF 179 (340)
T ss_dssp EEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEE
T ss_pred EEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEE
Confidence 9999999999999997654 44566778889999999999999999999999999998765433 234456667777776
Q ss_pred CC---CceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCC
Q 008496 366 RN---NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKE 442 (563)
Q Consensus 366 ~~---~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~ 442 (563)
.. ...+++++.|+.|++|++...+.+..+.+|.+.|++++|+|++++|++|+.|++|++||+++.+.+..+..+ ..
T Consensus 180 ~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~-~~ 258 (340)
T 4aow_A 180 SPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG-DI 258 (340)
T ss_dssp CSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECS-SC
T ss_pred ccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCC-ce
Confidence 43 345788999999999999999999999999999999999999999999999999999999999988877654 67
Q ss_pred EEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEec---------CCCCCEEEEEEcCCCCEEEEEeCCC
Q 008496 443 IYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN---------GHREPVYSLAFSPTGEYLASGSLDK 513 (563)
Q Consensus 443 i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---------~h~~~i~~l~~spdg~~lasgs~dg 513 (563)
+.++.|+|++. +++++.|+.|++||++.+..+..+. +|...|++++|+|||++||+|+.||
T Consensus 259 v~~~~~~~~~~----------~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg 328 (340)
T 4aow_A 259 INALCFSPNRY----------WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDN 328 (340)
T ss_dssp EEEEEECSSSS----------EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTS
T ss_pred EEeeecCCCCc----------eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCC
Confidence 99999999763 5677789999999999888776653 6888999999999999999999999
Q ss_pred cEEEEecCCCe
Q 008496 514 SMHIWSLKEGK 524 (563)
Q Consensus 514 ~v~iw~~~~~~ 524 (563)
.|+|||+.+|+
T Consensus 329 ~v~iW~~~tGt 339 (340)
T 4aow_A 329 LVRVWQVTIGT 339 (340)
T ss_dssp CEEEEEEEC--
T ss_pred EEEEEeCCCcC
Confidence 99999999875
No 25
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=2.8e-42 Score=348.52 Aligned_cols=282 Identities=20% Similarity=0.366 Sum_probs=249.4
Q ss_pred cCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCc--
Q 008496 272 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE-- 348 (563)
Q Consensus 272 ~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~-- 348 (563)
+|...|++++|+|+|++|++|+.||.|+||+.. +.....+..|...|.+++|+|+|++|++|+.|+++++||+.+..
T Consensus 64 gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~ 143 (380)
T 3iz6_a 64 GHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADR 143 (380)
T ss_dssp CCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSC
T ss_pred ccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccc
Confidence 356789999999999999999999999999975 56677889999999999999999999999999999999986532
Q ss_pred -----eeEEeeecccCeEEEecCC--CceEEEEeCCCeEEEEEcCCCcceeee-----cCCCcceeEEEECC-CCCEEEE
Q 008496 349 -----WKQQFEFHSGPTLDVDWRN--NVSFATSSTDNMIYVCKIGENRPIKTF-----AGHQGEVNCVKWDP-TGSLLAS 415 (563)
Q Consensus 349 -----~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~i~~~~~~~~~~~~~~-----~~h~~~i~~~~~~~-~~~~las 415 (563)
....+..|.+.+..+.|.+ ...+++++.|++|++|++.++..+..+ .+|...|.+++|++ ++.+|++
T Consensus 144 ~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s 223 (380)
T 3iz6_a 144 DGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFIS 223 (380)
T ss_dssp CCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEE
T ss_pred cCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEE
Confidence 3345667888888888765 456999999999999999998888777 68999999999987 8899999
Q ss_pred EeCCCcEEEEeCC-CCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCC---
Q 008496 416 CSDDVTAKIWNMK-QDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHR--- 491 (563)
Q Consensus 416 ~s~dg~i~iwd~~-~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~--- 491 (563)
|+.|++|++||++ ....+..+.+|...|.+++|+|++. +|++|+.||+|++||+++++++..+..+.
T Consensus 224 gs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~---------~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~ 294 (380)
T 3iz6_a 224 GSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQ---------RFGTGSDDGTCRLFDMRTGHQLQVYNREPDRN 294 (380)
T ss_dssp EETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSS---------EEEEECSSSCEEEEETTTTEEEEEECCCCSSS
T ss_pred EECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCC---------eEEEEcCCCeEEEEECCCCcEEEEeccccccc
Confidence 9999999999998 4567788899999999999999875 79999999999999999999988876543
Q ss_pred ----CCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEe-----cCCCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496 492 ----EPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYT-----GNGGIFEVCWNKEGDKIAACFANHTVCVLDFR 562 (563)
Q Consensus 492 ----~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~-----~~~~i~~l~w~~~g~~la~~~~~~~v~v~~~~ 562 (563)
..|++++|+|+|++|++|+.||.|++||+.+++.+..+. ..+.|.+++|+|+|+.||+|+.|++|.||++.
T Consensus 295 ~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~ 374 (380)
T 3iz6_a 295 DNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFS 374 (380)
T ss_dssp CCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECC
T ss_pred ccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecC
Confidence 248999999999999999999999999999998887762 24569999999999999999999999999975
No 26
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.2e-40 Score=327.17 Aligned_cols=289 Identities=28% Similarity=0.519 Sum_probs=252.1
Q ss_pred eeEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCC
Q 008496 208 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 287 (563)
Q Consensus 208 ~~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~ 287 (563)
...+.+|...|++++|+|++++||+|+.|+.+++|++.++... ..+ ..+...|++++|+|+++
T Consensus 16 ~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~-------------~~~----~~h~~~v~~~~~~~~~~ 78 (312)
T 4ery_A 16 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-------------KTI----SGHKLGISDVAWSSDSN 78 (312)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE-------------EEE----CCCSSCEEEEEECTTSS
T ss_pred EEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccc-------------hhh----ccCCCceEEEEEcCCCC
Confidence 4678999999999999999999999999999999998764321 111 23457799999999999
Q ss_pred EEEEEeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecC
Q 008496 288 LLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR 366 (563)
Q Consensus 288 ~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 366 (563)
+|++|+.||.|++|+.. +.....+.+|...|.++.|+|++++|++|+.|++|++||+++++....+..|..++..+.|.
T Consensus 79 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~ 158 (312)
T 4ery_A 79 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 158 (312)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEC
T ss_pred EEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEc
Confidence 99999999999999976 56677889999999999999999999999999999999999999999999999999999997
Q ss_pred CC-ceEEEEeCCCeEEEEEcCCCcceeeec-CCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEE
Q 008496 367 NN-VSFATSSTDNMIYVCKIGENRPIKTFA-GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIY 444 (563)
Q Consensus 367 ~~-~~~~~~~~d~~i~~~~~~~~~~~~~~~-~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~ 444 (563)
.+ ..+++++.|+.|++|++...+.+..+. .+...+.+++|+|++++|++++.|+.|++||+.+++.+..+..|.....
T Consensus 159 ~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 238 (312)
T 4ery_A 159 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 238 (312)
T ss_dssp TTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSS
T ss_pred CCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceE
Confidence 54 578899999999999999888776654 4567899999999999999999999999999999999888888866543
Q ss_pred E--EEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEe--CCCcEEEEec
Q 008496 445 T--IRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGS--LDKSMHIWSL 520 (563)
Q Consensus 445 ~--~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs--~dg~v~iw~~ 520 (563)
. ..+++.+. .+|++|+.||.|++||+.+++.+..+.+|..+|.+++|+|++.+|++++ .|+.|++|+.
T Consensus 239 ~~~~~~~~~~~--------~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~ 310 (312)
T 4ery_A 239 CIFANFSVTGG--------KWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 310 (312)
T ss_dssp CCCEEEECSSS--------CEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEEC
T ss_pred EEEEEEEeCCC--------cEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecC
Confidence 2 23333221 2789999999999999999999999999999999999999999999997 6999999986
Q ss_pred C
Q 008496 521 K 521 (563)
Q Consensus 521 ~ 521 (563)
.
T Consensus 311 d 311 (312)
T 4ery_A 311 D 311 (312)
T ss_dssp C
T ss_pred C
Confidence 4
No 27
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=2.1e-40 Score=342.22 Aligned_cols=317 Identities=25% Similarity=0.455 Sum_probs=281.1
Q ss_pred eeEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCC
Q 008496 208 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 287 (563)
Q Consensus 208 ~~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~ 287 (563)
...+.+|.+.|.. ++++++++|++|+.||+|++|++.++.. +..+ ..+...|++++|+ +.
T Consensus 111 ~~~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~-------------~~~~----~~h~~~v~~~~~~--~~ 170 (445)
T 2ovr_B 111 PKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKC-------------LRTL----VGHTGGVWSSQMR--DN 170 (445)
T ss_dssp CEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCE-------------EEEC----CCCSSCEEEEEEE--TT
T ss_pred eEEecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcE-------------EEEE----cCCCCCEEEEEec--CC
Confidence 4678899987644 3566799999999999999999876532 1122 2356789999997 67
Q ss_pred EEEEEeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecC
Q 008496 288 LLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR 366 (563)
Q Consensus 288 ~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 366 (563)
+|++|+.||.|++|+.. +.....+.+|..+|.++.|+ ++.+++|+.|++|++||+.+++....+..|..++.++.|
T Consensus 171 ~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~- 247 (445)
T 2ovr_B 171 IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY- 247 (445)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE-
T ss_pred EEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE-
Confidence 99999999999999975 56677889999999999995 578999999999999999999999999999999999999
Q ss_pred CCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEE
Q 008496 367 NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTI 446 (563)
Q Consensus 367 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~ 446 (563)
+...+++++.|+.|++|++....++..+.+|...|.+++| ++.++++|+.|+.|++||+++++.+..+..|...+.++
T Consensus 248 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~ 325 (445)
T 2ovr_B 248 DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGM 325 (445)
T ss_dssp CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEE
T ss_pred CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEE
Confidence 6678899999999999999999999999999999999999 78999999999999999999999999999999999999
Q ss_pred EEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecC---CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 008496 447 RWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG---HREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEG 523 (563)
Q Consensus 447 ~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~ 523 (563)
.+.+. +|++|+.||.|++||+++++++..+.+ |..+|++++|+ +.+|++|+.||.|++||+.++
T Consensus 326 ~~~~~-----------~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~ 392 (445)
T 2ovr_B 326 ELKDN-----------ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTG 392 (445)
T ss_dssp EEETT-----------EEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTC
T ss_pred EEeCC-----------EEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCC
Confidence 88542 789999999999999999999999876 88899999996 579999999999999999999
Q ss_pred eeEEEE------ecCCCEEEEEEcCCCCEEEEEECCCe----EEEEEee
Q 008496 524 KIVKTY------TGNGGIFEVCWNKEGDKIAACFANHT----VCVLDFR 562 (563)
Q Consensus 524 ~~~~~~------~~~~~i~~l~w~~~g~~la~~~~~~~----v~v~~~~ 562 (563)
+.+..+ ...+.|.+++|+|+|..||+|+.||+ +.||||+
T Consensus 393 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~ 441 (445)
T 2ovr_B 393 EFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD 441 (445)
T ss_dssp CEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECC
T ss_pred ceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECC
Confidence 998888 23456999999999999999999997 9999986
No 28
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=2.6e-40 Score=329.43 Aligned_cols=278 Identities=28% Similarity=0.511 Sum_probs=238.5
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEEcCCce---e-EeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCc--e
Q 008496 276 DVTTLDWNGEGTLLATGSYDGQARIWSTNGDL---K-CTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE--W 349 (563)
Q Consensus 276 ~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~---~-~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~--~ 349 (563)
.|.+++|+|+|++|++|+.||.|+||+..+.. . ....+|...|.+++|+|++++|++|+.|+++++||+.++. .
T Consensus 18 ~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~ 97 (345)
T 3fm0_A 18 RCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFEC 97 (345)
T ss_dssp CEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEE
T ss_pred cEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEE
Confidence 79999999999999999999999999986542 1 2236899999999999999999999999999999998764 4
Q ss_pred eEEeeecccCeEEEecCCC-ceEEEEeCCCeEEEEEcCCCc---ceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEE
Q 008496 350 KQQFEFHSGPTLDVDWRNN-VSFATSSTDNMIYVCKIGENR---PIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIW 425 (563)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~---~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iw 425 (563)
...+..|..++.++.|.++ ..+++++.|+.|++|++.... .+..+.+|...|.+++|+|++++|++|+.|++|++|
T Consensus 98 ~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w 177 (345)
T 3fm0_A 98 VTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLY 177 (345)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEE
T ss_pred EEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEE
Confidence 6677889999999999754 578899999999999997653 456788999999999999999999999999999999
Q ss_pred eCCCCc--eeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC---------------CeEEEEec
Q 008496 426 NMKQDK--YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL---------------GKLLYSLN 488 (563)
Q Consensus 426 d~~~~~--~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~---------------~~~~~~~~ 488 (563)
|..++. +...+.+|...|++++|+|++. +|++|+.|++|+|||... .+++..+.
T Consensus 178 ~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~---------~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (345)
T 3fm0_A 178 REEEDDWVCCATLEGHESTVWSLAFDPSGQ---------RLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLS 248 (345)
T ss_dssp EEETTEEEEEEEECCCSSCEEEEEECTTSS---------EEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEEC
T ss_pred EecCCCEEEEEEecCCCCceEEEEECCCCC---------EEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEec
Confidence 998775 4467889999999999999875 799999999999999632 14455665
Q ss_pred C-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCe--------eEEEE-e-cCCCEEEEEEcCCC-CEEEEEECCCeE
Q 008496 489 G-HREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGK--------IVKTY-T-GNGGIFEVCWNKEG-DKIAACFANHTV 556 (563)
Q Consensus 489 ~-h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~--------~~~~~-~-~~~~i~~l~w~~~g-~~la~~~~~~~v 556 (563)
+ |...|++++|+|++.+||+++.|+.|++|+...+. +.... . ....|.+++|+|++ ..||+|+.||+|
T Consensus 249 ~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v 328 (345)
T 3fm0_A 249 GFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEV 328 (345)
T ss_dssp SSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCE
T ss_pred CCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcE
Confidence 5 88899999999999999999999999999987542 11111 2 24579999999998 599999999999
Q ss_pred EEEEee
Q 008496 557 CVLDFR 562 (563)
Q Consensus 557 ~v~~~~ 562 (563)
.||+++
T Consensus 329 ~~W~~~ 334 (345)
T 3fm0_A 329 AFWKYQ 334 (345)
T ss_dssp EEEEEC
T ss_pred EEEEec
Confidence 999985
No 29
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=2.1e-40 Score=361.58 Aligned_cols=293 Identities=25% Similarity=0.443 Sum_probs=247.0
Q ss_pred eEecCCCCceEEEEECCCC-CEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCC
Q 008496 209 TILEGHTSEVCACAWSPAG-SLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 287 (563)
Q Consensus 209 ~~l~~h~~~V~~~~~sp~~-~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~ 287 (563)
..|++|++.|++++|+|++ .+|+|||.|++|+||++....... . .....+ ..|...|++++|+|+|+
T Consensus 376 ~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~-------~-~~~~~~----~~h~~~v~~v~~s~~g~ 443 (694)
T 3dm0_A 376 GTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAY-------G-VAQRRL----TGHSHFVEDVVLSSDGQ 443 (694)
T ss_dssp EEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCS-------C-EEEEEE----ECCSSCEEEEEECTTSS
T ss_pred hhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCccc-------c-ccccee----cCCCCcEEEEEECCCCC
Confidence 4688999999999999975 799999999999999987532110 0 111122 24567899999999999
Q ss_pred EEEEEeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecC
Q 008496 288 LLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR 366 (563)
Q Consensus 288 ~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 366 (563)
+|++|+.||.|+|||.. +.....+.+|..+|++++|+|++++|++|+.|++|++||+....... +
T Consensus 444 ~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~-~------------- 509 (694)
T 3dm0_A 444 FALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYT-I------------- 509 (694)
T ss_dssp EEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEE-E-------------
T ss_pred EEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCccee-e-------------
Confidence 99999999999999976 45667889999999999999999999999999999999975432110 0
Q ss_pred CCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCC--CEEEEEeCCCcEEEEeCCCCceeeeecccCCCEE
Q 008496 367 NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTG--SLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIY 444 (563)
Q Consensus 367 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~--~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~ 444 (563)
.....+|...|.+++|+|++ .+|++|+.|++|++||+++.++...+.+|...|+
T Consensus 510 ------------------------~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~ 565 (694)
T 3dm0_A 510 ------------------------SEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVS 565 (694)
T ss_dssp ------------------------CSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEE
T ss_pred ------------------------ccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEE
Confidence 01124688899999999987 6899999999999999999999999999999999
Q ss_pred EEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCe
Q 008496 445 TIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGK 524 (563)
Q Consensus 445 ~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~ 524 (563)
+++|+|++. +|++|+.||+|+|||+++++++..+.. ...|.+++|+|++.+|++++ ++.|+|||+.+++
T Consensus 566 ~v~~spdg~---------~l~sg~~Dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~ 634 (694)
T 3dm0_A 566 TVAVSPDGS---------LCASGGKDGVVLLWDLAEGKKLYSLEA-NSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKS 634 (694)
T ss_dssp EEEECTTSS---------EEEEEETTSBCEEEETTTTEEEECCBC-SSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTE
T ss_pred EEEEeCCCC---------EEEEEeCCCeEEEEECCCCceEEEecC-CCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCC
Confidence 999999875 799999999999999999999988874 46799999999999988876 4569999999999
Q ss_pred eEEEEecC--------------------CCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496 525 IVKTYTGN--------------------GGIFEVCWNKEGDKIAACFANHTVCVLDFR 562 (563)
Q Consensus 525 ~~~~~~~~--------------------~~i~~l~w~~~g~~la~~~~~~~v~v~~~~ 562 (563)
++..+... ..+.+++|+|+|++|++|+.||.|+|||+.
T Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 635 IVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp EEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred ChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 88776421 126789999999999999999999999985
No 30
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=6.1e-40 Score=352.54 Aligned_cols=328 Identities=18% Similarity=0.298 Sum_probs=273.0
Q ss_pred ceeEecCCCCceEEEEECCCCC-EEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCC---CeEEEEE
Q 008496 207 DVTILEGHTSEVCACAWSPAGS-LLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSK---DVTTLDW 282 (563)
Q Consensus 207 ~~~~l~~h~~~V~~~~~sp~~~-~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~V~~l~~ 282 (563)
.+..+.+|...|++++|+|+++ +|++|+.|+.+++|++.++.. ...+. .+.. .|++++|
T Consensus 152 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~-------------~~~~~----~~~~~~~~v~~~~~ 214 (615)
T 1pgu_A 152 SLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKF-------------SASDR----THHKQGSFVRDVEF 214 (615)
T ss_dssp EEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEE-------------EEEEC----SSSCTTCCEEEEEE
T ss_pred cceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcce-------------eeeec----ccCCCCceEEEEEE
Confidence 4567789999999999999997 899999999999999765321 11222 2344 7999999
Q ss_pred CCC-CCEEEEEeCCCeEEEEEcC-CceeEee-c---cCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeec
Q 008496 283 NGE-GTLLATGSYDGQARIWSTN-GDLKCTL-S---KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFH 356 (563)
Q Consensus 283 s~~-g~~l~sg~~dg~i~vw~~~-~~~~~~~-~---~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~ 356 (563)
+|+ +++|++|+.||.|++|+.. +.....+ . .|..+|.+++|+ ++.+|++++.|++|++||+++++....+..+
T Consensus 215 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~ 293 (615)
T 1pgu_A 215 SPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLD 293 (615)
T ss_dssp CSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred CCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCC
Confidence 999 9999999999999999975 5566666 5 899999999999 9999999999999999999999988888776
Q ss_pred ----ccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCC-----------------------
Q 008496 357 ----SGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT----------------------- 409 (563)
Q Consensus 357 ----~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~----------------------- 409 (563)
...+..+.|.+...+++++.++.|++|++....++..+.+|.+.|.+++| |+
T Consensus 294 ~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~~ 372 (615)
T 1pgu_A 294 KQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NPLISGSYDGRIMEWSSSSMHQDHS 372 (615)
T ss_dssp TTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TTTEEEETTSCEEETTTTEEECCCC
T ss_pred CCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cCcEEECCCCeEEEEEchhhcCccc
Confidence 35667777777788999999999999999877777777666655555554 32
Q ss_pred --------------------------------------------------------------------------------
Q 008496 410 -------------------------------------------------------------------------------- 409 (563)
Q Consensus 410 -------------------------------------------------------------------------------- 409 (563)
T Consensus 373 ~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (615)
T 1pgu_A 373 NLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAV 452 (615)
T ss_dssp SCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEE
T ss_pred CceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEE
Confidence
Q ss_pred ---CCEEEEEeC-CCcEEEEeCCCCcee-eeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEE
Q 008496 410 ---GSLLASCSD-DVTAKIWNMKQDKYV-HDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLL 484 (563)
Q Consensus 410 ---~~~las~s~-dg~i~iwd~~~~~~~-~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~ 484 (563)
+++|++++. |+.|++||+.++... ..+..|...|++++|+|++. +|++++.||.|++||+.+++++
T Consensus 453 ~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~---------~l~~~~~dg~i~iw~~~~~~~~ 523 (615)
T 1pgu_A 453 SLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSET---------YIAAGDVMGKILLYDLQSREVK 523 (615)
T ss_dssp EECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSS---------EEEEEETTSCEEEEETTTTEEE
T ss_pred EEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCC---------EEEEcCCCCeEEEeeCCCCcce
Confidence 334444444 555555555554443 55667889999999999885 7999999999999999999999
Q ss_pred EEecC-CCCCEEEEEEcC----------CCCEEEEEeCCCcEEEEecCCC-eeEEEEec-CCCEEEEEEcCCCCEEEEEE
Q 008496 485 YSLNG-HREPVYSLAFSP----------TGEYLASGSLDKSMHIWSLKEG-KIVKTYTG-NGGIFEVCWNKEGDKIAACF 551 (563)
Q Consensus 485 ~~~~~-h~~~i~~l~~sp----------dg~~lasgs~dg~v~iw~~~~~-~~~~~~~~-~~~i~~l~w~~~g~~la~~~ 551 (563)
..+.+ |..+|++++|+| ++++||+|+.||.|++|++.++ +++..+.+ ...|.+++|+|+|+ |++++
T Consensus 524 ~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~ 602 (615)
T 1pgu_A 524 TSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSG 602 (615)
T ss_dssp ECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEE
T ss_pred eEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCCC-eEEec
Confidence 99988 999999999999 9999999999999999999998 77777765 45799999999999 99999
Q ss_pred CCCeEEEEEeeC
Q 008496 552 ANHTVCVLDFRM 563 (563)
Q Consensus 552 ~~~~v~v~~~~~ 563 (563)
.|+.|.|||+..
T Consensus 603 ~d~~v~iw~~~~ 614 (615)
T 1pgu_A 603 ADACIKRWNVVL 614 (615)
T ss_dssp TTSCEEEEEEC-
T ss_pred CCceEEEEeeec
Confidence 999999999863
No 31
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=4.1e-39 Score=316.12 Aligned_cols=282 Identities=26% Similarity=0.483 Sum_probs=253.8
Q ss_pred cCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCcee
Q 008496 272 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWK 350 (563)
Q Consensus 272 ~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~ 350 (563)
.|...|++++|+|+|++|++|+.||.|++|+.. +.....+.+|..+|.+++|+|++++|++|+.|++|++||+.+++..
T Consensus 21 gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~ 100 (312)
T 4ery_A 21 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCL 100 (312)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred ccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEE
Confidence 456789999999999999999999999999974 5677788999999999999999999999999999999999999999
Q ss_pred EEeeecccCeEEEecCCC-ceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCC
Q 008496 351 QQFEFHSGPTLDVDWRNN-VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ 429 (563)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~ 429 (563)
..+..|...+.++.|.++ ..+++++.|+.|++|++...+.+..+.+|...|.+++|+|++++|++|+.|+.|++||+++
T Consensus 101 ~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~ 180 (312)
T 4ery_A 101 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 180 (312)
T ss_dssp EEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred EEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Confidence 999999999999999754 5778999999999999999999999999999999999999999999999999999999999
Q ss_pred Cceeeeec-ccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEE--EEE-cCCCCE
Q 008496 430 DKYVHDLR-EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYS--LAF-SPTGEY 505 (563)
Q Consensus 430 ~~~~~~~~-~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~--l~~-spdg~~ 505 (563)
++.+..+. .+...+..++|+|++. +|++++.||.|++||+++++++..+.+|...+.+ ..| .+++.+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~---------~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (312)
T 4ery_A 181 GQCLKTLIDDDNPPVSFVKFSPNGK---------YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW 251 (312)
T ss_dssp CCEEEEECCSSCCCEEEEEECTTSS---------EEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCE
T ss_pred CceeeEEeccCCCceEEEEECCCCC---------EEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcE
Confidence 88877654 4567899999999875 7899999999999999999999999888765332 234 467899
Q ss_pred EEEEeCCCcEEEEecCCCeeEEEEecC-CCEEEEEEcCCCCEEEEEE--CCCeEEEEEee
Q 008496 506 LASGSLDKSMHIWSLKEGKIVKTYTGN-GGIFEVCWNKEGDKIAACF--ANHTVCVLDFR 562 (563)
Q Consensus 506 lasgs~dg~v~iw~~~~~~~~~~~~~~-~~i~~l~w~~~g~~la~~~--~~~~v~v~~~~ 562 (563)
|++|+.||.|++||+.+++++..+.++ ..|..++|+|+++.||+++ .|++|.||+..
T Consensus 252 l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 252 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp EEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred EEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 999999999999999999999998764 5689999999999999987 58999999864
No 32
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-39 Score=324.43 Aligned_cols=297 Identities=19% Similarity=0.320 Sum_probs=255.7
Q ss_pred eeEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCC
Q 008496 208 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 287 (563)
Q Consensus 208 ~~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~ 287 (563)
...|.+|...|++++|+|++++|++|+.|+.|++|++.++.. ...+ ..+...|++++|+|+++
T Consensus 25 ~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~-------------~~~~----~~h~~~v~~~~~~~~~~ 87 (369)
T 3zwl_B 25 AIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGER-------------LGTL----DGHTGTIWSIDVDCFTK 87 (369)
T ss_dssp EEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCE-------------EEEE----CCCSSCEEEEEECTTSS
T ss_pred cEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchh-------------hhhh----hhcCCcEEEEEEcCCCC
Confidence 356899999999999999999999999999999999876532 1111 23467899999999999
Q ss_pred EEEEEeCCCeEEEEEcCC-ceeEeeccCCCCEEEEEeCCCCCEEEEeeCC-----CcEEEEECCCCceeEEeeecccCeE
Q 008496 288 LLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCD-----KTAIVWDVKTEEWKQQFEFHSGPTL 361 (563)
Q Consensus 288 ~l~sg~~dg~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D-----~~v~iwd~~~~~~~~~~~~~~~~~~ 361 (563)
+|++++.||.|++|+... .....+. |..+|.+++|+|++++|++++.+ +.|++||+........+..
T Consensus 88 ~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~------ 160 (369)
T 3zwl_B 88 YCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTK------ 160 (369)
T ss_dssp EEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEE------
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecc------
Confidence 999999999999999864 4444555 89999999999999999999999 9999999876543221111
Q ss_pred EEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCc--ceeEEEECCCCCEEEEEeCCCcEEEEeCCC-Cceeeeecc
Q 008496 362 DVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQG--EVNCVKWDPTGSLLASCSDDVTAKIWNMKQ-DKYVHDLRE 438 (563)
Q Consensus 362 ~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~--~i~~~~~~~~~~~las~s~dg~i~iwd~~~-~~~~~~~~~ 438 (563)
....++..+.+|.+ .+.+++|+|++++|++++.||.|++||+.+ ...+..+..
T Consensus 161 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 216 (369)
T 3zwl_B 161 ------------------------VSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDL 216 (369)
T ss_dssp ------------------------ECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEEC
T ss_pred ------------------------cccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEec
Confidence 11223445556766 899999999999999999999999999998 778888899
Q ss_pred cCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCC-----
Q 008496 439 HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDK----- 513 (563)
Q Consensus 439 ~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg----- 513 (563)
|...|.+++|+|++. +|++++.||.|++||+++++.+..+. +..++.+++|+|+++++++++.++
T Consensus 217 ~~~~v~~~~~~~~~~---------~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 286 (369)
T 3zwl_B 217 HEKSISDMQFSPDLT---------YFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVT 286 (369)
T ss_dssp CSSCEEEEEECTTSS---------EEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC-----
T ss_pred CCCceeEEEECCCCC---------EEEEecCCceEEEEECCCCceeeeec-CCCCceeEEecCCCceEEEeecCCCceEE
Confidence 999999999999875 78999999999999999999988887 778999999999999999999988
Q ss_pred ---------cEEEEecCCCeeEEEEec-CCCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496 514 ---------SMHIWSLKEGKIVKTYTG-NGGIFEVCWNKEGDKIAACFANHTVCVLDFR 562 (563)
Q Consensus 514 ---------~v~iw~~~~~~~~~~~~~-~~~i~~l~w~~~g~~la~~~~~~~v~v~~~~ 562 (563)
.|++||+.+++.+..+.+ ...|.+++|+|+|++|++|+.||.|.||+++
T Consensus 287 ~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~ 345 (369)
T 3zwl_B 287 TTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFE 345 (369)
T ss_dssp --------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEEC
T ss_pred EEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECc
Confidence 899999999999988875 4679999999999999999999999999985
No 33
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.1e-39 Score=324.80 Aligned_cols=279 Identities=22% Similarity=0.357 Sum_probs=236.7
Q ss_pred cCCCCeEEEEE-----CC-CCCEEEEEeCCCeEEEEEcCC--------ceeEeeccCCCCEEEEEeCCCCCEEEEeeCCC
Q 008496 272 EKSKDVTTLDW-----NG-EGTLLATGSYDGQARIWSTNG--------DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDK 337 (563)
Q Consensus 272 ~~~~~V~~l~~-----s~-~g~~l~sg~~dg~i~vw~~~~--------~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~ 337 (563)
.|...|++++| ++ ++.+|++|+.|+.|++|+... .....+.+|..+|.+++|+|++.+|++|+.|+
T Consensus 19 gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~ 98 (343)
T 2xzm_R 19 GHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDK 98 (343)
T ss_dssp CCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTS
T ss_pred cchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCC
Confidence 46778999999 77 999999999999999999753 23457889999999999999999999999999
Q ss_pred cEEEEECCCCceeEEeeecccCeEEEecCCC-ceEEEEeCCCeEEEEEcCCCcceee--ecCCCcceeEEEECCCC----
Q 008496 338 TAIVWDVKTEEWKQQFEFHSGPTLDVDWRNN-VSFATSSTDNMIYVCKIGENRPIKT--FAGHQGEVNCVKWDPTG---- 410 (563)
Q Consensus 338 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~~~~~--~~~h~~~i~~~~~~~~~---- 410 (563)
+|++||+++++....+..|...+.++.|.++ ..+++++.|+.|++|++........ ..+|...|.+++|+|++
T Consensus 99 ~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 178 (343)
T 2xzm_R 99 TLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSAN 178 (343)
T ss_dssp EEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCS
T ss_pred cEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeecccccccc
Confidence 9999999999999999999999999999754 5788999999999999974432221 23788999999999987
Q ss_pred ------CEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC-CeE
Q 008496 411 ------SLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL-GKL 483 (563)
Q Consensus 411 ------~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~-~~~ 483 (563)
.+|++++.|++|++|| ........+..|...|.+++|+|++. +|++|+.||.|++||+.. ...
T Consensus 179 ~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~---------~l~sgs~dg~v~iwd~~~~~~~ 248 (343)
T 2xzm_R 179 KVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGK---------YIATGGKDKKLLIWDILNLTYP 248 (343)
T ss_dssp CCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSS---------EEEEEETTCEEEEEESSCCSSC
T ss_pred ccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCC---------EEEEEcCCCeEEEEECCCCccc
Confidence 7899999999999999 45566778889999999999999886 799999999999999953 333
Q ss_pred EEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEE--EEe------------cCCCEEEEEEcCCCCEEEE
Q 008496 484 LYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVK--TYT------------GNGGIFEVCWNKEGDKIAA 549 (563)
Q Consensus 484 ~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~--~~~------------~~~~i~~l~w~~~g~~la~ 549 (563)
...+. +...|.+++|+|++++|++|+ |+.|++|++.+++... .+. ....+.+++|+|+|++||+
T Consensus 249 ~~~~~-~~~~v~~v~~sp~~~~la~~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s 326 (343)
T 2xzm_R 249 QREFD-AGSTINQIAFNPKLQWVAVGT-DQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFA 326 (343)
T ss_dssp SEEEE-CSSCEEEEEECSSSCEEEEEE-SSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEE
T ss_pred ceeec-CCCcEEEEEECCCCCEEEEEC-CCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEE
Confidence 33443 456799999999999887654 7789999998876443 332 2245899999999999999
Q ss_pred EECCCeEEEEEee
Q 008496 550 CFANHTVCVLDFR 562 (563)
Q Consensus 550 ~~~~~~v~v~~~~ 562 (563)
|+.||.|.||++.
T Consensus 327 g~~Dg~v~~w~~~ 339 (343)
T 2xzm_R 327 GFTDGVIRTFSFE 339 (343)
T ss_dssp EETTSEEEEEEEE
T ss_pred ecCCceEEEEEEE
Confidence 9999999999985
No 34
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=2e-40 Score=339.43 Aligned_cols=319 Identities=13% Similarity=0.182 Sum_probs=262.8
Q ss_pred ceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeCCC
Q 008496 217 EVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDG 296 (563)
Q Consensus 217 ~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg 296 (563)
.+++++|+|++++|++|+.|+.+++|++.++...... .....+....|++++++|++|+.||
T Consensus 58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~l~~~~~dg 119 (420)
T 3vl1_A 58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKML------------------KRADYTAVDTAKLQMRRFILGTTEG 119 (420)
T ss_dssp CCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTS------------------CSCCEEEEEEECSSSCEEEEEETTS
T ss_pred cccceeeeecCCeEEEEEcCCcEEEEEecccceeeEE------------------ecCCceEEEEEecCCCEEEEEECCC
Confidence 3557899999999999999999999998754321110 0113345557899999999999999
Q ss_pred eEEEEEcCCc-eeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCC-ceEEEE
Q 008496 297 QARIWSTNGD-LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNN-VSFATS 374 (563)
Q Consensus 297 ~i~vw~~~~~-~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 374 (563)
.|++|+.... ....+.+|.++|++++|+|++++|++|+.|++|++||+.+++....+..|...+.++.|.++ ..++++
T Consensus 120 ~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 199 (420)
T 3vl1_A 120 DIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSA 199 (420)
T ss_dssp CEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEE
T ss_pred CEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEE
Confidence 9999998754 44556799999999999999999999999999999999999999999999999999999754 568899
Q ss_pred eCCCeEEEEEcCCCcceeeecCC---C---------------------cceeEEEECCCCCEEEEEeCCCcEEEEeCCCC
Q 008496 375 STDNMIYVCKIGENRPIKTFAGH---Q---------------------GEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD 430 (563)
Q Consensus 375 ~~d~~i~~~~~~~~~~~~~~~~h---~---------------------~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~ 430 (563)
+.|+.|++|++...+++..+..| . ..+.+++|+|++++|++|+.||.|++||++++
T Consensus 200 ~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~ 279 (420)
T 3vl1_A 200 SLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSK 279 (420)
T ss_dssp ETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTC
T ss_pred cCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCC
Confidence 99999999999999888888753 2 34445556899999999999999999999998
Q ss_pred ceeeeec-ccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeE-EEEecC-CCCCEEEEEEcCCCCEEE
Q 008496 431 KYVHDLR-EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL-LYSLNG-HREPVYSLAFSPTGEYLA 507 (563)
Q Consensus 431 ~~~~~~~-~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~-h~~~i~~l~~spdg~~la 507 (563)
+.+..+. .|...|.+++|+|++. .+|++|+.||.|++||+++++. +..+.+ |..+|.++.| |++++|+
T Consensus 280 ~~~~~~~~~~~~~v~~~~~~~~~~--------~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~ 350 (420)
T 3vl1_A 280 EQTIQLPSKFTCSCNSLTVDGNNA--------NYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFV 350 (420)
T ss_dssp CEEEEECCTTSSCEEEEEECSSCT--------TEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEE
T ss_pred ceeEEcccccCCCceeEEEeCCCC--------CEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEE
Confidence 8776664 5788999999999874 2789999999999999998754 566665 6778888855 5788999
Q ss_pred EEeCCCcEEEEecCCCe----------eEEEEecCCCEEEEEEcCCCC---EEEEEECCCeEEEEEee
Q 008496 508 SGSLDKSMHIWSLKEGK----------IVKTYTGNGGIFEVCWNKEGD---KIAACFANHTVCVLDFR 562 (563)
Q Consensus 508 sgs~dg~v~iw~~~~~~----------~~~~~~~~~~i~~l~w~~~g~---~la~~~~~~~v~v~~~~ 562 (563)
+|+.||.|++|++.+.. ........+.|.+++|+|+|+ .|++++.+|.+.+|++.
T Consensus 351 s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~ 418 (420)
T 3vl1_A 351 SSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLS 418 (420)
T ss_dssp EETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESC
T ss_pred EecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEecc
Confidence 99999999999987632 112223356789999999999 77777789999999863
No 35
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-40 Score=367.84 Aligned_cols=332 Identities=14% Similarity=0.194 Sum_probs=260.4
Q ss_pred EecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEE
Q 008496 210 ILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLL 289 (563)
Q Consensus 210 ~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l 289 (563)
...+|...|++++|+|++++||+|+.||+|+||+...... ... ..+...|++++|+| |++|
T Consensus 12 ~~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~-------------~~~-----~~~~~~V~~l~fsp-g~~L 72 (902)
T 2oaj_A 12 NKYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEV-------------VIK-----LEDRSAIKEMRFVK-GIYL 72 (902)
T ss_dssp EEEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEE-------------EEE-----CSSCCCEEEEEEET-TTEE
T ss_pred cccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEE-------------EEE-----cCCCCCEEEEEEcC-CCEE
Confidence 3468999999999999999999999999999999754211 111 12356799999999 8899
Q ss_pred EEEeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeE-----------Eeeecc
Q 008496 290 ATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQ-----------QFEFHS 357 (563)
Q Consensus 290 ~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~-----------~~~~~~ 357 (563)
++++.|+.|++||.. +.....+. |.+.|++++|+|++++|++|+.||+|++||+.++.... .+..|.
T Consensus 73 ~S~s~D~~v~lWd~~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~ 151 (902)
T 2oaj_A 73 VVINAKDTVYVLSLYSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARL 151 (902)
T ss_dssp EEEETTCEEEEEETTTCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCC
T ss_pred EEEECcCeEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCC
Confidence 999999999999986 45555564 77899999999999999999999999999999887531 223467
Q ss_pred cCeEEEecCCC--ceEEEEeCCCeEEEEEcCCCcceeeecCC------------------CcceeEEEECCCCCEEEEEe
Q 008496 358 GPTLDVDWRNN--VSFATSSTDNMIYVCKIGENRPIKTFAGH------------------QGEVNCVKWDPTGSLLASCS 417 (563)
Q Consensus 358 ~~~~~~~~~~~--~~~~~~~~d~~i~~~~~~~~~~~~~~~~h------------------~~~i~~~~~~~~~~~las~s 417 (563)
+++.++.|.++ ..+++++.|+.| +|++...+++..+.+| ...|++++|+|+|++||+|+
T Consensus 152 ~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs 230 (902)
T 2oaj_A 152 SPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIH 230 (902)
T ss_dssp CCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEE
T ss_pred CCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEE
Confidence 78999999874 578899999999 9999999888888766 56799999999999999999
Q ss_pred CCCcEEEEeCCCCceeee--ec---c-------------cCCCEEEEEEccCCC---------C-CC-------------
Q 008496 418 DDVTAKIWNMKQDKYVHD--LR---E-------------HSKEIYTIRWSPTGS---------G-TN------------- 456 (563)
Q Consensus 418 ~dg~i~iwd~~~~~~~~~--~~---~-------------~~~~i~~~~~~p~~~---------~-~~------------- 456 (563)
.||+|++||+++++++.. +. . |...|++++|+|... + ..
T Consensus 231 ~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~ 310 (902)
T 2oaj_A 231 EDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDL 310 (902)
T ss_dssp TTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEE
T ss_pred CCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEec
Confidence 999999999998887642 21 1 345799999954210 0 00
Q ss_pred --------------------------------------------CC-----CCcEEEEEEeCCCeEEEEeCCCCeEEEE-
Q 008496 457 --------------------------------------------NP-----NQQLILASASFDSTVKLWDVELGKLLYS- 486 (563)
Q Consensus 457 --------------------------------------------~~-----~~~~~l~s~s~dg~i~iwd~~~~~~~~~- 486 (563)
.| .+...+++++.||.|++||+.++.....
T Consensus 311 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~ 390 (902)
T 2oaj_A 311 GYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKA 390 (902)
T ss_dssp EECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCG
T ss_pred CCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCccccc
Confidence 00 0011456777889999999877643321
Q ss_pred ----------------------------------------ecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeE
Q 008496 487 ----------------------------------------LNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIV 526 (563)
Q Consensus 487 ----------------------------------------~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~ 526 (563)
+.+|...+.+++|+|||++||+|+.|++|++||+.++.+.
T Consensus 391 ~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~ 470 (902)
T 2oaj_A 391 SLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQ 470 (902)
T ss_dssp GGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTT
T ss_pred ccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCcccc
Confidence 2334444555667899999999999999999999887531
Q ss_pred --EEE----------ecCCCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496 527 --KTY----------TGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR 562 (563)
Q Consensus 527 --~~~----------~~~~~i~~l~w~~~g~~la~~~~~~~v~v~~~~ 562 (563)
..+ .....|.+++|+|||+.||+|+.|++|.|||+.
T Consensus 471 ~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~ 518 (902)
T 2oaj_A 471 DNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYE 518 (902)
T ss_dssp TTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEE
T ss_pred CCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEec
Confidence 111 123579999999999999999999999999985
No 36
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=6e-40 Score=331.74 Aligned_cols=285 Identities=15% Similarity=0.249 Sum_probs=238.0
Q ss_pred eeEecCCCCceEEEEECCCC-CEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECC-C
Q 008496 208 VTILEGHTSEVCACAWSPAG-SLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG-E 285 (563)
Q Consensus 208 ~~~l~~h~~~V~~~~~sp~~-~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~-~ 285 (563)
...+.+|...|++++|+|++ ++||+|+.|+.|+||++.++... ..+ ....+...|++++|+| +
T Consensus 66 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~----------~~~-----~~~~h~~~v~~~~~~~~~ 130 (383)
T 3ei3_B 66 HRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKT----------SFI-----QGMGPGDAITGMKFNQFN 130 (383)
T ss_dssp EEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCE----------EEE-----CCCSTTCBEEEEEEETTE
T ss_pred EEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccc----------eee-----ecCCcCCceeEEEeCCCC
Confidence 45678999999999999998 99999999999999999764321 010 1123567899999999 7
Q ss_pred CCEEEEEeCCCeEEEEEcCCceeEeeccC---CCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEE
Q 008496 286 GTLLATGSYDGQARIWSTNGDLKCTLSKH---KGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLD 362 (563)
Q Consensus 286 g~~l~sg~~dg~i~vw~~~~~~~~~~~~h---~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~ 362 (563)
+.+|++|+.||.|++|+..+.....+..| ...|.+++|+|++++|++|+.|+.|++||++ +.
T Consensus 131 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~-------------- 195 (383)
T 3ei3_B 131 TNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GH-------------- 195 (383)
T ss_dssp EEEEEEEETTTEEEEEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-SC--------------
T ss_pred CCEEEEEeCCCEEEEEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-CC--------------
Confidence 89999999999999999988766666544 4889999999999999999999999999984 22
Q ss_pred EecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCC-EEEEEeCCCcEEEEeCCC----Cceeeeec
Q 008496 363 VDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGS-LLASCSDDVTAKIWNMKQ----DKYVHDLR 437 (563)
Q Consensus 363 ~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~-~las~s~dg~i~iwd~~~----~~~~~~~~ 437 (563)
++..+.+|.+.|.+++|+|+++ +|++|+.|+.|++||+++ ..++..+
T Consensus 196 ---------------------------~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~- 247 (383)
T 3ei3_B 196 ---------------------------EIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM- 247 (383)
T ss_dssp ---------------------------EEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-
T ss_pred ---------------------------EEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-
Confidence 2234567889999999999999 999999999999999987 5556555
Q ss_pred ccCCCEEEEEEcc-CCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCC-----------------CCEEEEEE
Q 008496 438 EHSKEIYTIRWSP-TGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHR-----------------EPVYSLAF 499 (563)
Q Consensus 438 ~~~~~i~~~~~~p-~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~-----------------~~i~~l~~ 499 (563)
.|...|++++|+| ++. +|++++.|+.|++||+++++.+..+.+|. ..+..++|
T Consensus 248 ~~~~~v~~~~~s~~~~~---------~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 318 (383)
T 3ei3_B 248 PHEKPVNAAYFNPTDST---------KLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGR 318 (383)
T ss_dssp ECSSCEEEEEECTTTSC---------EEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEEC
T ss_pred cCCCceEEEEEcCCCCC---------EEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEe
Confidence 7999999999999 775 78999999999999999877665555442 34555777
Q ss_pred cCCCCEEEEEeCCCcEEEEecCCCeeEEEEec---CCCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496 500 SPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG---NGGIFEVCWNKEGDKIAACFANHTVCVLDFR 562 (563)
Q Consensus 500 spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~---~~~i~~l~w~~~g~~la~~~~~~~v~v~~~~ 562 (563)
+|||++ +|+.||.|+|||+.+++++..+.+ .+.+..++|+|+|+.||+|+ |+.|.|||++
T Consensus 319 s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~ 381 (383)
T 3ei3_B 319 YPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRE 381 (383)
T ss_dssp BCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC
T ss_pred cCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecC
Confidence 788777 788999999999999999999875 33456679999999999996 8999999985
No 37
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=4.1e-39 Score=346.11 Aligned_cols=345 Identities=17% Similarity=0.261 Sum_probs=281.4
Q ss_pred CceeEecCCCCc-eEEEEECC--CCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEE
Q 008496 206 SDVTILEGHTSE-VCACAWSP--AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDW 282 (563)
Q Consensus 206 ~~~~~l~~h~~~-V~~~~~sp--~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~ 282 (563)
.....+.+|... |++++|+| ++++||+|+.||.|++|++.++.... .........+ ..+...|.+++|
T Consensus 54 ~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~-----~~~~~~~~~~----~~~~~~v~~~~~ 124 (615)
T 1pgu_A 54 PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESN-----SVEVNVKSEF----QVLAGPISDISW 124 (615)
T ss_dssp CSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGT-----EEEEEEEEEE----ECCSSCEEEEEE
T ss_pred ccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccc-----cccccccchh----hcccccEEEEEE
Confidence 356788999999 99999999 99999999999999999985431000 0001111112 234578999999
Q ss_pred CCCCCEEEEEeCC----CeEEEEEcCCceeEeeccCCCCEEEEEeCCCCC-EEEEeeCCCcEEEEECCCCceeEEeeecc
Q 008496 283 NGEGTLLATGSYD----GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGD-YLLTGSCDKTAIVWDVKTEEWKQQFEFHS 357 (563)
Q Consensus 283 s~~g~~l~sg~~d----g~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~~~ 357 (563)
+|+|++|++++.+ +.|++|+ .+.....+.+|...|.+++|+|++. .|++++.|+.|++||+.+++....+..|.
T Consensus 125 s~~~~~l~~~~~~~~~~~~v~~~d-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~ 203 (615)
T 1pgu_A 125 DFEGRRLCVVGEGRDNFGVFISWD-SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHH 203 (615)
T ss_dssp CTTSSEEEEEECCSSCSEEEEETT-TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSS
T ss_pred eCCCCEEEEeccCCCCccEEEEEE-CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccC
Confidence 9999999999988 7999999 5667778899999999999999998 79999999999999999999999998888
Q ss_pred c---CeEEEecCCC--ceEEEEeCCCeEEEEEcCCCcceeee-c---CCCcceeEEEECCCCCEEEEEeCCCcEEEEeCC
Q 008496 358 G---PTLDVDWRNN--VSFATSSTDNMIYVCKIGENRPIKTF-A---GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMK 428 (563)
Q Consensus 358 ~---~~~~~~~~~~--~~~~~~~~d~~i~~~~~~~~~~~~~~-~---~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~ 428 (563)
. .+.++.|.++ ..+++++.|+.|++|++...+++..+ . +|...|.+++|+ ++++|++++.|+.|++||+.
T Consensus 204 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~ 282 (615)
T 1pgu_A 204 KQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVT 282 (615)
T ss_dssp CTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETT
T ss_pred CCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECC
Confidence 8 8999999765 56788999999999999999998888 6 899999999999 99999999999999999998
Q ss_pred CCceeeeec---------------------------------------------ccCCCEEEEEEccC------------
Q 008496 429 QDKYVHDLR---------------------------------------------EHSKEIYTIRWSPT------------ 451 (563)
Q Consensus 429 ~~~~~~~~~---------------------------------------------~~~~~i~~~~~~p~------------ 451 (563)
+++.+..+. .|...|.+++| |+
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~l~~~~~dg~i~~ 361 (615)
T 1pgu_A 283 TSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NPLISGSYDGRIME 361 (615)
T ss_dssp TTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TTTEEEETTSCEEE
T ss_pred CCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cCcEEECCCCeEEE
Confidence 765443332 33344444444 22
Q ss_pred ---------------------CCCC-----------CC----------------C-------------------CC----
Q 008496 452 ---------------------GSGT-----------NN----------------P-------------------NQ---- 460 (563)
Q Consensus 452 ---------------------~~~~-----------~~----------------~-------------------~~---- 460 (563)
+... .+ | ..
T Consensus 362 w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (615)
T 1pgu_A 362 WSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIK 441 (615)
T ss_dssp TTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred EEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceee
Confidence 1100 00 0 00
Q ss_pred --------------cEEEEEEeC-CCeEEEEeCCCCeEE-EEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCe
Q 008496 461 --------------QLILASASF-DSTVKLWDVELGKLL-YSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGK 524 (563)
Q Consensus 461 --------------~~~l~s~s~-dg~i~iwd~~~~~~~-~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~ 524 (563)
..+|++++. ||.|++||+..++.. ..+.+|..+|++++|+|+|++|++|+.||.|++|++.+++
T Consensus 442 ~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~ 521 (615)
T 1pgu_A 442 SVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSRE 521 (615)
T ss_dssp EEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred ecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCc
Confidence 125677777 888888888876655 6677899999999999999999999999999999999999
Q ss_pred eEEEEe--cCCCEEEEEEcC----------CCCEEEEEECCCeEEEEEee
Q 008496 525 IVKTYT--GNGGIFEVCWNK----------EGDKIAACFANHTVCVLDFR 562 (563)
Q Consensus 525 ~~~~~~--~~~~i~~l~w~~----------~g~~la~~~~~~~v~v~~~~ 562 (563)
++..+. ....|.+++|+| +|++||+|+.|+.|.|||++
T Consensus 522 ~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 571 (615)
T 1pgu_A 522 VKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVK 571 (615)
T ss_dssp EEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESS
T ss_pred ceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECC
Confidence 988876 456799999999 99999999999999999975
No 38
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=6.9e-39 Score=332.63 Aligned_cols=317 Identities=23% Similarity=0.363 Sum_probs=265.0
Q ss_pred eeEecCCCCce-EEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCC
Q 008496 208 VTILEGHTSEV-CACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG 286 (563)
Q Consensus 208 ~~~l~~h~~~V-~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g 286 (563)
...+.+|...| .+++| ++++|++|+.||+|++||+.++.. +..+ ..+...|++++|++++
T Consensus 114 ~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~-------------~~~~----~~h~~~V~~l~~~~~~ 174 (464)
T 3v7d_B 114 RTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKF-------------LLQL----SGHDGGVWALKYAHGG 174 (464)
T ss_dssp EEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEE-------------EEEE----CCCSSCEEEEEECSTT
T ss_pred eEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcE-------------EEEE----eCCCcCEEEEEEcCCC
Confidence 45788999886 55555 678999999999999999876531 1122 2456789999999988
Q ss_pred CEEEEEeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeC--CCCCEEEEeeCCCcEEEEECCCCce--------------
Q 008496 287 TLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWN--KKGDYLLTGSCDKTAIVWDVKTEEW-------------- 349 (563)
Q Consensus 287 ~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~--~~~~~l~s~s~D~~v~iwd~~~~~~-------------- 349 (563)
+|++|+.||.|++|+.. +.....+.+|.++|.+++|+ +++.+|++|+.|++|++||+.++..
T Consensus 175 -~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~ 253 (464)
T 3v7d_B 175 -ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVF 253 (464)
T ss_dssp -EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEE
T ss_pred -EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEe
Confidence 99999999999999976 55677888999999999998 5778999999999999999987653
Q ss_pred ---------eEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCC
Q 008496 350 ---------KQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDV 420 (563)
Q Consensus 350 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg 420 (563)
...+..|...+..+.. +...+++++.|+.|++|++.+.+++..+.+|...|.+++|+|++++|++|+.||
T Consensus 254 ~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg 332 (464)
T 3v7d_B 254 HTPEENPYFVGVLRGHMASVRTVSG-HGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDT 332 (464)
T ss_dssp SCGGGCTTEEEEECCCSSCEEEEEE-ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTS
T ss_pred eccCCCeEEEEEccCccceEEEEcC-CCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCC
Confidence 3344556666666643 345788999999999999999999999999999999999999999999999999
Q ss_pred cEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEc
Q 008496 421 TAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFS 500 (563)
Q Consensus 421 ~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s 500 (563)
.|++||+.+++++..+.+|...|.++.|++. +|++++.||+|++||+.++....... |...+..++|+
T Consensus 333 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~-----------~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~ 400 (464)
T 3v7d_B 333 TIRIWDLENGELMYTLQGHTALVGLLRLSDK-----------FLVSAAADGSIRGWDANDYSRKFSYH-HTNLSAITTFY 400 (464)
T ss_dssp CEEEEETTTTEEEEEECCCSSCEEEEEECSS-----------EEEEEETTSEEEEEETTTCCEEEEEE-CTTCCCEEEEE
T ss_pred cEEEEECCCCcEEEEEeCCCCcEEEEEEcCC-----------EEEEEeCCCcEEEEECCCCceeeeec-CCCCccEEEEE
Confidence 9999999999999999999999999999742 79999999999999999988776664 66678889999
Q ss_pred CCCCEEEEEeCCCcEEEEecCCCeeEEEE--ecCCCEEEEEEcCCCCEEEEEECCCeEEEE
Q 008496 501 PTGEYLASGSLDKSMHIWSLKEGKIVKTY--TGNGGIFEVCWNKEGDKIAACFANHTVCVL 559 (563)
Q Consensus 501 pdg~~lasgs~dg~v~iw~~~~~~~~~~~--~~~~~i~~l~w~~~g~~la~~~~~~~v~v~ 559 (563)
|++++|++|+ ||.|++||+.+++++..+ ...+.|.+++|+ ....++++..++.+.++
T Consensus 401 ~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~ 459 (464)
T 3v7d_B 401 VSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLE 459 (464)
T ss_dssp ECSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEE
T ss_pred eCCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEE
Confidence 9999999999 899999999999998763 345679999997 33344455566655443
No 39
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=3e-39 Score=359.08 Aligned_cols=327 Identities=22% Similarity=0.329 Sum_probs=281.2
Q ss_pred eeEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCC
Q 008496 208 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 287 (563)
Q Consensus 208 ~~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~ 287 (563)
...+.+|.+.|.+++|||++++||+|+.||.|+||++.++.. ...+. .+...|++++|+|+|+
T Consensus 6 ~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~-------------~~~~~----~~~~~v~~~~~s~~~~ 68 (814)
T 3mkq_A 6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVE-------------VRSIQ----VTETPVRAGKFIARKN 68 (814)
T ss_dssp EEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE-------------EEEEE----CCSSCEEEEEEEGGGT
T ss_pred ceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCce-------------EEEEe----cCCCcEEEEEEeCCCC
Confidence 467889999999999999999999999999999999876431 11121 3457899999999999
Q ss_pred EEEEEeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCC-ceeEEeeecccCeEEEec
Q 008496 288 LLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE-EWKQQFEFHSGPTLDVDW 365 (563)
Q Consensus 288 ~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~-~~~~~~~~~~~~~~~~~~ 365 (563)
+|++|+.||.|++|+.. +.....+.+|.++|++++|+|++++|++++.|++|++||+.++ .....+..|..++.++.|
T Consensus 69 ~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~ 148 (814)
T 3mkq_A 69 WIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAF 148 (814)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEE
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEE
Confidence 99999999999999975 5667788999999999999999999999999999999999886 667778888999999999
Q ss_pred CC--CceEEEEeCCCeEEEEEcCCCcceeeecCCC-cceeEEEECC--CCCEEEEEeCCCcEEEEeCCCCceeeeecccC
Q 008496 366 RN--NVSFATSSTDNMIYVCKIGENRPIKTFAGHQ-GEVNCVKWDP--TGSLLASCSDDVTAKIWNMKQDKYVHDLREHS 440 (563)
Q Consensus 366 ~~--~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~-~~i~~~~~~~--~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~ 440 (563)
.+ ...+++++.|+.|++|++....+...+..+. ..+.+++|+| ++.+|++|+.||.|++||+.++..+..+..|.
T Consensus 149 ~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~ 228 (814)
T 3mkq_A 149 NPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHM 228 (814)
T ss_dssp ETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCS
T ss_pred EcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCC
Confidence 76 4578999999999999998887777776655 8899999999 99999999999999999999999999999999
Q ss_pred CCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCC--EEEEEeCCCcEEEE
Q 008496 441 KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGE--YLASGSLDKSMHIW 518 (563)
Q Consensus 441 ~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~--~lasgs~dg~v~iw 518 (563)
..|.+++|+|++. +|++++.||.|++||+.+++.+..+..|..+|.+++|+|+|. ++++++ ++.+.+|
T Consensus 229 ~~v~~~~~~~~~~---------~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~ 298 (814)
T 3mkq_A 229 SNVSFAVFHPTLP---------IIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGF-DNGFTVL 298 (814)
T ss_dssp SCEEEEEECSSSS---------EEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEE-TTEEEEE
T ss_pred CCEEEEEEcCCCC---------EEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEe-CCCEEEE
Confidence 9999999999875 799999999999999999999999999999999999999997 455555 6668899
Q ss_pred ecCCCeeEEEEe--------------------------------------------cCCCEEEEEEcCCCCEEEEEECCC
Q 008496 519 SLKEGKIVKTYT--------------------------------------------GNGGIFEVCWNKEGDKIAACFANH 554 (563)
Q Consensus 519 ~~~~~~~~~~~~--------------------------------------------~~~~i~~l~w~~~g~~la~~~~~~ 554 (563)
++..+.....+. ....+..++|+|+|+.||+++ ++
T Consensus 299 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~ 377 (814)
T 3mkq_A 299 SLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DG 377 (814)
T ss_dssp ECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TT
T ss_pred EcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CC
Confidence 876533211111 011356899999999999997 88
Q ss_pred eEEEEEee
Q 008496 555 TVCVLDFR 562 (563)
Q Consensus 555 ~v~v~~~~ 562 (563)
.+.||+++
T Consensus 378 ~~~i~~~~ 385 (814)
T 3mkq_A 378 EYVIYTAL 385 (814)
T ss_dssp EEEEEETT
T ss_pred EEEEEECc
Confidence 99999854
No 40
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1.2e-39 Score=330.77 Aligned_cols=295 Identities=21% Similarity=0.322 Sum_probs=252.8
Q ss_pred eeEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCC--
Q 008496 208 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE-- 285 (563)
Q Consensus 208 ~~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~-- 285 (563)
..++.+|...|++++|+| ++|++|+.||+|++|++.++...... ... ..+ ..+...|++++|+|+
T Consensus 9 ~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~----~~~---~~~----~~h~~~v~~~~~~~~~~ 75 (397)
T 1sq9_A 9 ANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPK----DKS---YSH----FVHKSGLHHVDVLQAIE 75 (397)
T ss_dssp EEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGG----GGE---EEE----ECCTTCEEEEEEEEEEE
T ss_pred hhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCC----Ccc---eEE----ecCCCcEEEEEEecccc
Confidence 357889999999999999 89999999999999999765421100 001 111 134678999999999
Q ss_pred --C---CEEEEEeCCCeEEEEEcCCce------eEeeccC-----CCCEEEEEeC----CCCCE-EEEeeCCCcEEEEEC
Q 008496 286 --G---TLLATGSYDGQARIWSTNGDL------KCTLSKH-----KGPIFSLKWN----KKGDY-LLTGSCDKTAIVWDV 344 (563)
Q Consensus 286 --g---~~l~sg~~dg~i~vw~~~~~~------~~~~~~h-----~~~V~~l~~~----~~~~~-l~s~s~D~~v~iwd~ 344 (563)
| .+|++++.||.|++|+..... ...+..| ..+|.+++|+ |++++ |++++.|+.|++||+
T Consensus 76 ~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 155 (397)
T 1sq9_A 76 RDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKF 155 (397)
T ss_dssp TTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEE
T ss_pred cCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeC
Confidence 9 999999999999999976433 6778888 5999999999 99999 999999999999999
Q ss_pred CC------CceeE-----Eee-------ecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecC---C---Ccc
Q 008496 345 KT------EEWKQ-----QFE-------FHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAG---H---QGE 400 (563)
Q Consensus 345 ~~------~~~~~-----~~~-------~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~---h---~~~ 400 (563)
.+ +.... .+. .+...+.++.|.++..+++++.|+.|++|++...+++..+.+ | ...
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~ 235 (397)
T 1sq9_A 156 HPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNS 235 (397)
T ss_dssp ESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCC
T ss_pred CccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCceEEEEeCCCcEEEEECCCCceeEEEeccccccccCCc
Confidence 88 66555 553 367788899997655788899999999999999999999998 9 999
Q ss_pred eeEEEECCCCCEEEEEeCC---CcEEEEeCCCCceeeeecc-------------cCCCEEEEEEccCCCCCCCCCCcEEE
Q 008496 401 VNCVKWDPTGSLLASCSDD---VTAKIWNMKQDKYVHDLRE-------------HSKEIYTIRWSPTGSGTNNPNQQLIL 464 (563)
Q Consensus 401 i~~~~~~~~~~~las~s~d---g~i~iwd~~~~~~~~~~~~-------------~~~~i~~~~~~p~~~~~~~~~~~~~l 464 (563)
|.+++|+|++++|++++.| +.|++||+++++.+..+.. |...|.+++|+|++. +|
T Consensus 236 i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---------~l 306 (397)
T 1sq9_A 236 IRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGE---------TL 306 (397)
T ss_dssp EEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSS---------EE
T ss_pred cceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCC---------EE
Confidence 9999999999999999999 9999999999999999988 999999999999875 79
Q ss_pred EEEeCCCeEEEEeCCCCeEEEEec------CC---------------CCCEEEEEEcCCC----------CEEEEEeCCC
Q 008496 465 ASASFDSTVKLWDVELGKLLYSLN------GH---------------REPVYSLAFSPTG----------EYLASGSLDK 513 (563)
Q Consensus 465 ~s~s~dg~i~iwd~~~~~~~~~~~------~h---------------~~~i~~l~~spdg----------~~lasgs~dg 513 (563)
++++.||.|++||+.+++++..+. +| ..+|++++|+|+| ++|++|+.||
T Consensus 307 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg 386 (397)
T 1sq9_A 307 CSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDR 386 (397)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTT
T ss_pred EEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCC
Confidence 999999999999999999999998 88 9999999999999 7999999999
Q ss_pred cEEEEecCCCe
Q 008496 514 SMHIWSLKEGK 524 (563)
Q Consensus 514 ~v~iw~~~~~~ 524 (563)
.|++|++.+|+
T Consensus 387 ~i~iw~~~~g~ 397 (397)
T 1sq9_A 387 SIRWFREAGGK 397 (397)
T ss_dssp EEEEEEEEC--
T ss_pred cEEEEEcCCCC
Confidence 99999998764
No 41
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.7e-39 Score=322.60 Aligned_cols=253 Identities=19% Similarity=0.266 Sum_probs=207.5
Q ss_pred cCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEE
Q 008496 212 EGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLAT 291 (563)
Q Consensus 212 ~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~s 291 (563)
..|...|++++|+|++ .|++|+.||+|+|||+.++.... .... ....|...|++++|+|+|++|++
T Consensus 79 ~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~----------~~~~---~~~~H~~~V~~v~~spdg~~l~s 144 (344)
T 4gqb_B 79 VQTEAGVADLTWVGER-GILVASDSGAVELWELDENETLI----------VSKF---CKYEHDDIVSTVSVLSSGTQAVS 144 (344)
T ss_dssp EEESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCE----------EEEE---EEECCSSCEEEEEECTTSSEEEE
T ss_pred eccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCcee----------Eeec---cccCCCCCEEEEEECCCCCEEEE
Confidence 3466789999999985 67899999999999998754311 1111 11245678999999999999999
Q ss_pred EeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCC-EEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCCc
Q 008496 292 GSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGD-YLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV 369 (563)
Q Consensus 292 g~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (563)
|+.||.|++||.. +.....+.+|.+.|++++|+|++. .|++|+.|++|++||+++++....+.
T Consensus 145 gs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~--------------- 209 (344)
T 4gqb_B 145 GSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIG--------------- 209 (344)
T ss_dssp EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC---------------
T ss_pred EeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeee---------------
Confidence 9999999999976 567778999999999999999984 78999999999999998876544321
Q ss_pred eEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCC-CCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEE
Q 008496 370 SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT-GSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRW 448 (563)
Q Consensus 370 ~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~-~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~ 448 (563)
...|...+.+++|+|+ +++|++|+.||+|+|||+++++++..+.+|...|++++|
T Consensus 210 ------------------------~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~f 265 (344)
T 4gqb_B 210 ------------------------CSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVF 265 (344)
T ss_dssp ----------------------------CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEE
T ss_pred ------------------------cceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEE
Confidence 1234556889999985 578999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEecCCCeeE
Q 008496 449 SPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGE-YLASGSLDKSMHIWSLKEGKIV 526 (563)
Q Consensus 449 ~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~-~lasgs~dg~v~iw~~~~~~~~ 526 (563)
+|++. .+|++|+.|++|+|||+.+++++ .+.+|...|++++|||++. +|++||.|++|++|++.+..+.
T Consensus 266 sp~g~--------~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~~~ 335 (344)
T 4gqb_B 266 SPHSV--------PFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPLP 335 (344)
T ss_dssp CSSSS--------CCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC----
T ss_pred ccCCC--------eEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCCCC
Confidence 99874 26899999999999999988764 5789999999999999986 5779999999999999876543
No 42
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.5e-38 Score=369.36 Aligned_cols=336 Identities=21% Similarity=0.345 Sum_probs=284.9
Q ss_pred eeEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCC
Q 008496 208 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 287 (563)
Q Consensus 208 ~~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~ 287 (563)
...+.+|.+.|++++|+|++++||+|+.||+|++|++.++.. +..+ ..+...|++++|+|+|+
T Consensus 608 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~-------------~~~~----~~h~~~v~~~~~s~~~~ 670 (1249)
T 3sfz_A 608 RLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEK-------------LLDI----KAHEDEVLCCAFSSDDS 670 (1249)
T ss_dssp SEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE-------------EEEE----CCCSSCEEEEEECTTSS
T ss_pred eEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCE-------------EEEe----ccCCCCEEEEEEecCCC
Confidence 457889999999999999999999999999999999976532 1112 23567899999999999
Q ss_pred EEEEEeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCC--CCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEe
Q 008496 288 LLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNK--KGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVD 364 (563)
Q Consensus 288 ~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~--~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~ 364 (563)
+|++|+.||.|++|+.. +.....+.+|..+|.+++|+| ++..+++|+.|++|++||+.++.....+..|..++.++.
T Consensus 671 ~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~ 750 (1249)
T 3sfz_A 671 YIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCR 750 (1249)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEE
T ss_pred EEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEE
Confidence 99999999999999975 567778899999999999999 556899999999999999999999999999999999999
Q ss_pred cCCC-ceEEEEeCCCeEEEEEcCCCcceeee-------------------------------------------------
Q 008496 365 WRNN-VSFATSSTDNMIYVCKIGENRPIKTF------------------------------------------------- 394 (563)
Q Consensus 365 ~~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~------------------------------------------------- 394 (563)
|.++ ..+++++.|+.|++|++........+
T Consensus 751 ~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~ 830 (1249)
T 3sfz_A 751 FSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSG 830 (1249)
T ss_dssp ECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCC
T ss_pred EecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCC
Confidence 9754 57889999999999998654322211
Q ss_pred ------cCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCC-------------
Q 008496 395 ------AGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGT------------- 455 (563)
Q Consensus 395 ------~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~------------- 455 (563)
.+|...|.+++|+|+++++++++.||.|++||+.++..+..+.+|...|++++|+|++...
T Consensus 831 ~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~ 910 (1249)
T 3sfz_A 831 LLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWE 910 (1249)
T ss_dssp EEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred ceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 2678889999999999999999999999999999999999999999999999999987410
Q ss_pred ----------------------------------------------------------CCCCCcEEEEEEeCCCeEEEEe
Q 008496 456 ----------------------------------------------------------NNPNQQLILASASFDSTVKLWD 477 (563)
Q Consensus 456 ----------------------------------------------------------~~~~~~~~l~s~s~dg~i~iwd 477 (563)
..|+. .++++|+.||.|++||
T Consensus 911 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g-~~l~~g~~~g~i~i~d 989 (1249)
T 3sfz_A 911 TKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHL-EYVAFGDEDGAIKIIE 989 (1249)
T ss_dssp HHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTS-SEEEEEETTSCCEEEE
T ss_pred ccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCC-CEEEEEcCCCCEEEEE
Confidence 01111 1355666666666666
Q ss_pred CCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEecCCCEEEEEEcCCCCEEEEEECCCeEE
Q 008496 478 VELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVC 557 (563)
Q Consensus 478 ~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~g~~la~~~~~~~v~ 557 (563)
+.+++.+..+.+|..+|++++|+|+|++|++|+.||.|++|++.+++.+........|.+++|++++ .+++++.++.+.
T Consensus 990 ~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~v~ 1068 (1249)
T 3sfz_A 990 LPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDS-RLLSWSFDGTVK 1068 (1249)
T ss_dssp TTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSS-EEEEEESSSEEE
T ss_pred cCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCCC-cEEEEECCCcEE
Confidence 6677777778889999999999999999999999999999999999887666667789999999976 567778999999
Q ss_pred EEEee
Q 008496 558 VLDFR 562 (563)
Q Consensus 558 v~~~~ 562 (563)
|||++
T Consensus 1069 vwd~~ 1073 (1249)
T 3sfz_A 1069 VWNVI 1073 (1249)
T ss_dssp EEETT
T ss_pred EEECC
Confidence 99974
No 43
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.8e-39 Score=325.34 Aligned_cols=293 Identities=19% Similarity=0.343 Sum_probs=243.2
Q ss_pred eEecCCCCceEEEEECCC----CCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECC
Q 008496 209 TILEGHTSEVCACAWSPA----GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG 284 (563)
Q Consensus 209 ~~l~~h~~~V~~~~~sp~----~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~ 284 (563)
.++.+|...|++++|+|+ ...+++++.++.|++|++.++... ..+.... ...+...|++++|+|
T Consensus 12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~----------~~~~~~~--~~~~~~~v~~~~~~~ 79 (366)
T 3k26_A 12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEI----------RLLQSYV--DADADENFYTCAWTY 79 (366)
T ss_dssp EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCE----------EEEEEEE--CSCTTCCEEEEEEEE
T ss_pred EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEE----------Eeeeecc--ccCCCCcEEEEEecc
Confidence 355799999999999994 456777777789999998754321 1111111 122457799999999
Q ss_pred C----CCEEEEEeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCC-CCCEEEEeeCCCcEEEEECCCCceeEEeeeccc
Q 008496 285 E----GTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNK-KGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSG 358 (563)
Q Consensus 285 ~----g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~ 358 (563)
+ |.+|++|+.||.|++|+.. +.....+.+|..+|.+++|+| ++++|++|+.|++|++||+++++....+
T Consensus 80 ~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~----- 154 (366)
T 3k26_A 80 DSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIF----- 154 (366)
T ss_dssp CTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEE-----
T ss_pred CCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEe-----
Confidence 9 6799999999999999976 567778889999999999999 8999999999999999999876543322
Q ss_pred CeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecc
Q 008496 359 PTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLRE 438 (563)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~ 438 (563)
..+.+|...|.+++|+|++++|++++.||.|++||+++++....+..
T Consensus 155 ---------------------------------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 201 (366)
T 3k26_A 155 ---------------------------------GGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKE 201 (366)
T ss_dssp ---------------------------------CSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHH
T ss_pred ---------------------------------cccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccce
Confidence 11357889999999999999999999999999999988765544433
Q ss_pred ----------------------------cCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe--------
Q 008496 439 ----------------------------HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK-------- 482 (563)
Q Consensus 439 ----------------------------~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~-------- 482 (563)
|...|.+++|+ +. +|++++.||.|++||+.++.
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~---------~l~~~~~d~~i~~wd~~~~~~~~~~~~~ 270 (366)
T 3k26_A 202 SYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GD---------LILSKSCENAIVCWKPGKMEDDIDKIKP 270 (366)
T ss_dssp HHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TT---------EEEEECSSSEEEEEEESSTTCCGGGCCT
T ss_pred eEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CC---------EEEEEecCCEEEEEeCCCcccccccccc
Confidence 88999999998 22 78999999999999988763
Q ss_pred ------EEEEecCCCCCEEEEEEcCC--CCEEEEEeCCCcEEEEecCCCe----eEEEEecC---CCEEEEEEcCCCCEE
Q 008496 483 ------LLYSLNGHREPVYSLAFSPT--GEYLASGSLDKSMHIWSLKEGK----IVKTYTGN---GGIFEVCWNKEGDKI 547 (563)
Q Consensus 483 ------~~~~~~~h~~~i~~l~~spd--g~~lasgs~dg~v~iw~~~~~~----~~~~~~~~---~~i~~l~w~~~g~~l 547 (563)
.+..+.+|..+|++++|+|+ +++|++|+.||.|++||+.+++ ....+..+ ..|.+++|+|+|++|
T Consensus 271 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 350 (366)
T 3k26_A 271 SESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSIL 350 (366)
T ss_dssp TCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEE
T ss_pred CCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeE
Confidence 47788899999999999999 9999999999999999999875 44466654 689999999999999
Q ss_pred EEEECCCeEEEEEee
Q 008496 548 AACFANHTVCVLDFR 562 (563)
Q Consensus 548 a~~~~~~~v~v~~~~ 562 (563)
++|+.||.|.|||+.
T Consensus 351 ~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 351 IAVCDDASIWRWDRL 365 (366)
T ss_dssp EEEETTSEEEEEEC-
T ss_pred EEEeCCCEEEEEEec
Confidence 999999999999985
No 44
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.7e-39 Score=356.89 Aligned_cols=332 Identities=9% Similarity=0.088 Sum_probs=248.8
Q ss_pred eEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeee---cccccCCCCeEEEEECCC
Q 008496 209 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVK---GRTNEKSKDVTTLDWNGE 285 (563)
Q Consensus 209 ~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~V~~l~~s~~ 285 (563)
..+. |...|++++|+|++++|++|+.||+|++||+.++... .+...... .....+...|++++|+|+
T Consensus 93 ~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~---------~~~i~~~~~~~~~~~~h~~~V~sl~~sp~ 162 (902)
T 2oaj_A 93 TTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLS---------SFKLDNLQKSSFFPAARLSPIVSIQWNPR 162 (902)
T ss_dssp EEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEE---------EEEECCHHHHHTCSSSCCCCCCEEEEETT
T ss_pred EEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccc---------cceeccccccccccccCCCCeEEEEEccC
Confidence 3443 6788999999999999999999999999999764310 00000000 112345678999999996
Q ss_pred -CCEEEEEeCCCeEEEEEcCC-ceeEeeccC------------------CCCEEEEEeCCCCCEEEEeeCCCcEEEEECC
Q 008496 286 -GTLLATGSYDGQARIWSTNG-DLKCTLSKH------------------KGPIFSLKWNKKGDYLLTGSCDKTAIVWDVK 345 (563)
Q Consensus 286 -g~~l~sg~~dg~i~vw~~~~-~~~~~~~~h------------------~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~ 345 (563)
+..|++|+.||.| +||... .....+..| ...|++++|+|+|.+|++|+.|++|++||++
T Consensus 163 ~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~ 241 (902)
T 2oaj_A 163 DIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDAN 241 (902)
T ss_dssp EEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETT
T ss_pred CCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Confidence 5789999999999 999864 344455444 5789999999999999999999999999998
Q ss_pred CCceeEE--ee---e-------------cccCeEEEecC----CC--ce-------------------------------
Q 008496 346 TEEWKQQ--FE---F-------------HSGPTLDVDWR----NN--VS------------------------------- 370 (563)
Q Consensus 346 ~~~~~~~--~~---~-------------~~~~~~~~~~~----~~--~~------------------------------- 370 (563)
+++.+.. +. . +..++..+.|. ++ ..
T Consensus 242 ~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~ 321 (902)
T 2oaj_A 242 SGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSY 321 (902)
T ss_dssp TCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCH
T ss_pred CCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccch
Confidence 8776542 10 0 12235555552 11 11
Q ss_pred ---------------------------------------------EEEEeCCCeEEEEEcCCCccee-------------
Q 008496 371 ---------------------------------------------FATSSTDNMIYVCKIGENRPIK------------- 392 (563)
Q Consensus 371 ---------------------------------------------~~~~~~d~~i~~~~~~~~~~~~------------- 392 (563)
+++.+.|+.|++|++.++.+..
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~ 401 (902)
T 2oaj_A 322 EGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLR 401 (902)
T ss_dssp HHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBT
T ss_pred hhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccC
Confidence 2233334556666654332211
Q ss_pred ----------------------------eecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceee----e--ec-
Q 008496 393 ----------------------------TFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVH----D--LR- 437 (563)
Q Consensus 393 ----------------------------~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~----~--~~- 437 (563)
.+.||...+.+++|+|++++||||+.|++||+||+.++.... . +.
T Consensus 402 ~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~ 481 (902)
T 2oaj_A 402 PLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSR 481 (902)
T ss_dssp TBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHH
T ss_pred CCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechh
Confidence 123344445556678999999999999999999998764211 1 11
Q ss_pred ----ccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC--------------------------------
Q 008496 438 ----EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG-------------------------------- 481 (563)
Q Consensus 438 ----~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~-------------------------------- 481 (563)
+|...|++++|+|++. +||+|+.||+|+|||+.++
T Consensus 482 ~~~~~h~~~V~svafspdg~---------~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (902)
T 2oaj_A 482 TLNKAKELAVDKISFAAETL---------ELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVD 552 (902)
T ss_dssp HTTCSSSCCEEEEEEETTTT---------EEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEE
T ss_pred hcCCCCCCceeEEEecCCCC---------eEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCcccccc
Confidence 7888999999999986 8999999999999998765
Q ss_pred -------------eEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEe------c-CCCEEEEEEc
Q 008496 482 -------------KLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYT------G-NGGIFEVCWN 541 (563)
Q Consensus 482 -------------~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~------~-~~~i~~l~w~ 541 (563)
+++..+.+|..+|++|+||||| +||+|+.|++|+|||++++.++.... + ...|++++|+
T Consensus 553 ~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs 631 (902)
T 2oaj_A 553 VRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFV 631 (902)
T ss_dssp CGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEE
T ss_pred ccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEE
Confidence 3477888999999999999999 99999999999999999887765321 2 3459999999
Q ss_pred -----CCC---CEEEEEECCCeEEEEEe
Q 008496 542 -----KEG---DKIAACFANHTVCVLDF 561 (563)
Q Consensus 542 -----~~g---~~la~~~~~~~v~v~~~ 561 (563)
||| .+|++|+.|++|.+||+
T Consensus 632 ~~~~~~Dg~~~~~l~sgs~D~tv~~wd~ 659 (902)
T 2oaj_A 632 IMEYGDDGYSSILMVCGTDMGEVITYKI 659 (902)
T ss_dssp EEECTTSSSEEEEEEEEETTSEEEEEEE
T ss_pred EEecCCCCCcceEEEEEecCCcEEEEEE
Confidence 886 89999999999999998
No 45
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-38 Score=310.67 Aligned_cols=287 Identities=26% Similarity=0.363 Sum_probs=249.7
Q ss_pred ceeEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCC
Q 008496 207 DVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG 286 (563)
Q Consensus 207 ~~~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g 286 (563)
....+.+|.+.|++++| |++.+|++|+.||.|++|++.++.. .... ..+...|++++|+|++
T Consensus 10 ~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~-------------~~~~----~~~~~~v~~~~~~~~~ 71 (313)
T 3odt_A 10 LSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWL-------------GTVV----YTGQGFLNSVCYDSEK 71 (313)
T ss_dssp EEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEE-------------EEEE----EECSSCEEEEEEETTT
T ss_pred HHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEE-------------EEEe----ecCCccEEEEEECCCC
Confidence 45678999999999999 9999999999999999999865321 1111 1235789999999999
Q ss_pred CEEEEEeCCCeEEEEEcCC----ceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEE
Q 008496 287 TLLATGSYDGQARIWSTNG----DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLD 362 (563)
Q Consensus 287 ~~l~sg~~dg~i~vw~~~~----~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~ 362 (563)
++|++|+.||.+++|+... .....+..|..+|.++.| ++++|++++.|+.|++|| .+.....+..|..++..
T Consensus 72 ~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~ 147 (313)
T 3odt_A 72 ELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWD 147 (313)
T ss_dssp TEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEE
T ss_pred CEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeE
Confidence 9999999999999999653 345678899999999999 578999999999999999 66777788888899988
Q ss_pred EecC--CCceEEEEeCCCeEEEEEcCCCcceeeecC-CCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeccc
Q 008496 363 VDWR--NNVSFATSSTDNMIYVCKIGENRPIKTFAG-HQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREH 439 (563)
Q Consensus 363 ~~~~--~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~-h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~ 439 (563)
+.|. +...+++++.|+.|++|+ ...++..+.. |...|.+++|+|++. +++++.|+.|++||+++++.+..+..|
T Consensus 148 ~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~ 224 (313)
T 3odt_A 148 AKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGH 224 (313)
T ss_dssp EEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred EEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcC
Confidence 8875 467889999999999999 4556677777 899999999999998 899999999999999999999999999
Q ss_pred CCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 008496 440 SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWS 519 (563)
Q Consensus 440 ~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~ 519 (563)
...|++++|+|++ .|++++.||.|++||+.+++++..+..|..+|.+++|+|+++ +++++.||.|++|+
T Consensus 225 ~~~i~~~~~~~~~----------~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~ 293 (313)
T 3odt_A 225 ESFVYCIKLLPNG----------DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFS 293 (313)
T ss_dssp SSCEEEEEECTTS----------CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEE
T ss_pred CceEEEEEEecCC----------CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEe
Confidence 9999999999986 278999999999999999999999999999999999999998 56799999999999
Q ss_pred cCCCeeEEEE
Q 008496 520 LKEGKIVKTY 529 (563)
Q Consensus 520 ~~~~~~~~~~ 529 (563)
+.+++.+...
T Consensus 294 ~~~~~~~~~~ 303 (313)
T 3odt_A 294 QEKSRWASED 303 (313)
T ss_dssp SCGGGCCC--
T ss_pred CCCCceeehh
Confidence 9988765543
No 46
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2.9e-40 Score=383.79 Aligned_cols=342 Identities=21% Similarity=0.296 Sum_probs=290.9
Q ss_pred eeEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCC--------ce-----------EEEEEe-ee
Q 008496 208 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGP--------LN-----------VLVLKH-VK 267 (563)
Q Consensus 208 ~~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~--------~~-----------~~~~~~-~~ 267 (563)
+..+.+|...|.+++|+|++++|++++.|+++++|++.+........... .. ...... ..
T Consensus 875 ~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 954 (1249)
T 3sfz_A 875 VADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTG 954 (1249)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSC
T ss_pred eeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcc
Confidence 45678999999999999999999999999999999975421110000000 00 000000 00
Q ss_pred cccccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCC
Q 008496 268 GRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT 346 (563)
Q Consensus 268 ~~~~~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~ 346 (563)
.........|++++|+|+|+++++|+.+|.|++|+.. +.....+.+|..+|++++|+|+|++|++++.|++|++||+.+
T Consensus 955 ~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~ 1034 (1249)
T 3sfz_A 955 QIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQT 1034 (1249)
T ss_dssp CEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTT
T ss_pred eEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCC
Confidence 0011224579999999999999999999999999975 566677889999999999999999999999999999999999
Q ss_pred CceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEe
Q 008496 347 EEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWN 426 (563)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd 426 (563)
+.... +..|...+.++.|.++..+++++.|+.|++|++.+++.+..+.+|.+.|.+++|+|++++|++++.|++|++||
T Consensus 1035 ~~~~~-~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd 1113 (1249)
T 3sfz_A 1035 GDYVF-LQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWS 1113 (1249)
T ss_dssp TEEEC-CBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEEC
T ss_pred CceEE-EecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEE
Confidence 87664 45677889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEe---------cCCCCCEEEE
Q 008496 427 MKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSL---------NGHREPVYSL 497 (563)
Q Consensus 427 ~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~---------~~h~~~i~~l 497 (563)
+.++.++..+.+|...|++++|+|++. +|++|+.||.|++||+.+++++..+ .+|..+|+++
T Consensus 1114 ~~~~~~~~~l~~h~~~v~~~~~s~dg~---------~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l 1184 (1249)
T 3sfz_A 1114 FDLLSPLHELKGHNGCVRCSAFSLDGI---------LLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDV 1184 (1249)
T ss_dssp SSSSSCSBCCCCCSSCEEEEEECSSSS---------EEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEE
T ss_pred CCCcceeeeeccCCCcEEEEEECCCCC---------EEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEE
Confidence 999999999999999999999999886 7999999999999999998876654 6788999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEec-CCCEEEEEEcCCCCEEEEEECCCeEEEEEe
Q 008496 498 AFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG-NGGIFEVCWNKEGDKIAACFANHTVCVLDF 561 (563)
Q Consensus 498 ~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~-~~~i~~l~w~~~g~~la~~~~~~~v~v~~~ 561 (563)
+|||||++|++++ |.|++||+.+++.+..+.. ...|.+++|+|+|+.|++++.+|.+.||++
T Consensus 1185 ~fs~dg~~l~s~~--g~v~vwd~~~g~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~v~vw~l 1247 (1249)
T 3sfz_A 1185 CFSPDSKTLVSAG--GYLKWWNVATGDSSQTFYTNGTNLKKIHVSPDFRTYVTVDNLGILYILQV 1247 (1249)
T ss_dssp EECTTSSCEEEES--SSEEEBCSSSCBCCCCCCCSSCCCCCCEECSSSCCEEEECTTCCEEEECC
T ss_pred EECCCCCEEEECC--CeEEEEECCCCceeeeeeccCCcccEEEECCCCCEEEEecCCcEEEEEee
Confidence 9999999999886 8999999999998877764 446889999999999999999999999986
No 47
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1.2e-38 Score=310.44 Aligned_cols=254 Identities=25% Similarity=0.407 Sum_probs=208.1
Q ss_pred eeEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCC--
Q 008496 208 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE-- 285 (563)
Q Consensus 208 ~~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~-- 285 (563)
+.++.+|...|++++|+|+|++||||+.|++|+||++...... . +..+ ..|...|++++|+++
T Consensus 2 ~~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~------~-----~~~l----~gH~~~V~~v~~s~~~~ 66 (297)
T 2pm7_B 2 VVIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHK------L-----IDTL----TGHEGPVWRVDWAHPKF 66 (297)
T ss_dssp CEECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBC------C-----CEEE----CCCSSCEEEEEECCGGG
T ss_pred ceeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcE------E-----EEEE----ccccCCeEEEEecCCCc
Confidence 3567899999999999999999999999999999998642110 0 1111 245678999999874
Q ss_pred CCEEEEEeCCCeEEEEEcCCc---eeEeeccCCCCEEEEEeCCC--CCEEEEeeCCCcEEEEECCCCceeEEeeecccCe
Q 008496 286 GTLLATGSYDGQARIWSTNGD---LKCTLSKHKGPIFSLKWNKK--GDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPT 360 (563)
Q Consensus 286 g~~l~sg~~dg~i~vw~~~~~---~~~~~~~h~~~V~~l~~~~~--~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~ 360 (563)
|++|++|+.||+|++|+.... ....+..|..+|.+++|+|+ +.+|++|+.|++|++||++++...
T Consensus 67 g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~---------- 136 (297)
T 2pm7_B 67 GTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTT---------- 136 (297)
T ss_dssp CSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCB----------
T ss_pred CCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCce----------
Confidence 899999999999999998643 44567889999999999997 899999999999999998764210
Q ss_pred EEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCC-------------CCEEEEEeCCCcEEEEeC
Q 008496 361 LDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT-------------GSLLASCSDDVTAKIWNM 427 (563)
Q Consensus 361 ~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~-------------~~~las~s~dg~i~iwd~ 427 (563)
....+.+|...|.+++|+|+ +++||+|+.|++|+|||+
T Consensus 137 -----------------------------~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~ 187 (297)
T 2pm7_B 137 -----------------------------SPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKY 187 (297)
T ss_dssp -----------------------------CCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEE
T ss_pred -----------------------------eeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEE
Confidence 01234567888888888886 579999999999999999
Q ss_pred CCCc----eeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe---EEEEe--cCCCCCEEEEE
Q 008496 428 KQDK----YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK---LLYSL--NGHREPVYSLA 498 (563)
Q Consensus 428 ~~~~----~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~---~~~~~--~~h~~~i~~l~ 498 (563)
+++. ....+.+|...|.+++|+|++. ...+|++|+.|++|+|||++.+. ....+ ..|...|++++
T Consensus 188 ~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~------~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~ 261 (297)
T 2pm7_B 188 NSDAQTYVLESTLEGHSDWVRDVAWSPTVL------LRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRAS 261 (297)
T ss_dssp ETTTTEEEEEEEECCCSSCEEEEEECCCCS------SSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEE
T ss_pred cCCCceEEEEEEecCCCCceEEEEECCCCC------CceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEE
Confidence 8765 5667889999999999999751 11379999999999999987642 22233 56888999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEecC
Q 008496 499 FSPTGEYLASGSLDKSMHIWSLK 521 (563)
Q Consensus 499 ~spdg~~lasgs~dg~v~iw~~~ 521 (563)
|+|+|++||+|+.||.|+||+..
T Consensus 262 ~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 262 WSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp ECSSSCCEEEEETTSCEEEEEEC
T ss_pred ECCCCCEEEEEcCCCcEEEEEEC
Confidence 99999999999999999999976
No 48
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-40 Score=346.52 Aligned_cols=310 Identities=14% Similarity=0.129 Sum_probs=230.0
Q ss_pred CCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCC------CCEEEEEeCCCeEEE
Q 008496 227 GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE------GTLLATGSYDGQARI 300 (563)
Q Consensus 227 ~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~------g~~l~sg~~dg~i~v 300 (563)
+++||+|+.|++|+||++.++... ......+ ..+...|.+++|+|+ +.+||+|+.||+|+|
T Consensus 173 ~~~laS~s~D~tI~iWd~~~~~~~---------~~~~~~l----~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~Dgtvrl 239 (524)
T 2j04_B 173 LEMFDKEKHSSCIQIFKMNTSTLH---------CVKVQTI----VHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINF 239 (524)
T ss_dssp ---------CEEEEEEEEETTTCC---------EEEEEEE----EECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEE
T ss_pred hhhhccCCCCceEEEEEccCCCCC---------ceEEEEE----EecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEE
Confidence 334555678899999998654321 0000011 123467999999997 579999999999999
Q ss_pred EEcCCce------------eEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCc-eeEEeeecccCeEEE--ec
Q 008496 301 WSTNGDL------------KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE-WKQQFEFHSGPTLDV--DW 365 (563)
Q Consensus 301 w~~~~~~------------~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~-~~~~~~~~~~~~~~~--~~ 365 (563)
|++.... ...+.+|..+|++++|+++ ..|++|+.||+|++||++++. ....+..|..++.++ .|
T Consensus 240 Wd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~ 318 (524)
T 2j04_B 240 LEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAY 318 (524)
T ss_dssp EECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEEC
T ss_pred EEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEc
Confidence 9986431 2367789999999999986 489999999999999998764 445678899999998 56
Q ss_pred CCC--ceEEEEeCCCeEEEEEcCCCcceeeecCCCc--ceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCC
Q 008496 366 RNN--VSFATSSTDNMIYVCKIGENRPIKTFAGHQG--EVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSK 441 (563)
Q Consensus 366 ~~~--~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~--~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~ 441 (563)
.++ ..|++++.|++|++|++...+++..+.+|.. .|.+++|+|+++.|++++.|++|++||++++.++..+.+|..
T Consensus 319 s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~ 398 (524)
T 2j04_B 319 SDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRET 398 (524)
T ss_dssp CTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSS
T ss_pred CCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCC
Confidence 654 5789999999999999998887777777764 488999999999999999999999999999988888999999
Q ss_pred CEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecC-----CCCCEEEEEEcCCCCEEEEEeCCCcEE
Q 008496 442 EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG-----HREPVYSLAFSPTGEYLASGSLDKSMH 516 (563)
Q Consensus 442 ~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-----h~~~i~~l~~spdg~~lasgs~dg~v~ 516 (563)
.|++++|+|++. +|++|+.||+|+|||+..+ .+..++. +...|++++|+|+|..+.. . | .+.
T Consensus 399 ~V~sva~Sp~g~---------~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~-~-~-~~~ 465 (524)
T 2j04_B 399 TITAIGVSRLHP---------MVLAGSADGSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSIKDDKYRI-D-S-SYE 465 (524)
T ss_dssp CEEEEECCSSCC---------BCEEEETTTEEECCBSCSS-TTTCC------CCCCEEEECBCCSSSCEEEE-C-C-CCC
T ss_pred ceEEEEeCCCCC---------eEEEEECCCEEEEEechHh-hccccccCccceeeeEEEEeccCCCCCeEEc-c-C-Cce
Confidence 999999999875 6899999999999998643 2111111 1125789999999986632 2 2 234
Q ss_pred EEecC-CCeeEEEEec-CCCEEEEEEcCCCC---EEEEEECCCeEEEEEeeC
Q 008496 517 IWSLK-EGKIVKTYTG-NGGIFEVCWNKEGD---KIAACFANHTVCVLDFRM 563 (563)
Q Consensus 517 iw~~~-~~~~~~~~~~-~~~i~~l~w~~~g~---~la~~~~~~~v~v~~~~~ 563 (563)
+|+.. ++.++.++.+ ...|++|+|+|++. .||+|+.+|.|+||+++.
T Consensus 466 ~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 466 VYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp CCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred ecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEccc
Confidence 44433 4555555554 46799999999964 999999999999999873
No 49
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=2.4e-37 Score=306.71 Aligned_cols=281 Identities=25% Similarity=0.423 Sum_probs=244.8
Q ss_pred ccCCCCeEEEEECCC-CCEEEEEeCCCeEEEEEcCCc------eeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEE
Q 008496 271 NEKSKDVTTLDWNGE-GTLLATGSYDGQARIWSTNGD------LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWD 343 (563)
Q Consensus 271 ~~~~~~V~~l~~s~~-g~~l~sg~~dg~i~vw~~~~~------~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd 343 (563)
.+|.+.|++|+|+|+ +++|+||+.||+|+||+.... ....+.+|..+|.+++|+|++++|++++.|+.|++|+
T Consensus 35 ~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~ 114 (340)
T 4aow_A 35 KGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWD 114 (340)
T ss_dssp CCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred CCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEe
Confidence 356788999999997 689999999999999997532 3457889999999999999999999999999999999
Q ss_pred CCCCceeEEeeecccCeEEEecC-CCceEEEEeCCCeEEEEEcCCCcc-eeeecCCCcceeEEEECCCC--CEEEEEeCC
Q 008496 344 VKTEEWKQQFEFHSGPTLDVDWR-NNVSFATSSTDNMIYVCKIGENRP-IKTFAGHQGEVNCVKWDPTG--SLLASCSDD 419 (563)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~~~~~~~~~~-~~~~~~h~~~i~~~~~~~~~--~~las~s~d 419 (563)
............+...+....+. ....+++++.|+.+++|+...... ...+.+|...+.+++|++++ .++++++.|
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d 194 (340)
T 4aow_A 115 LTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWD 194 (340)
T ss_dssp TTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETT
T ss_pred ecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCC
Confidence 99888777777777766666664 456788999999999999876543 44567899999999998865 578999999
Q ss_pred CcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEE
Q 008496 420 VTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAF 499 (563)
Q Consensus 420 g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~ 499 (563)
+.|++||+.+++.+..+.+|...|++++|+|++. +|++|+.||.|++||+++++++..+..+ ..|.+++|
T Consensus 195 ~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~---------~l~s~s~Dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~ 264 (340)
T 4aow_A 195 KLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGS---------LCASGGKDGQAMLWDLNEGKHLYTLDGG-DIINALCF 264 (340)
T ss_dssp SCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS---------EEEEEETTCEEEEEETTTTEEEEEEECS-SCEEEEEE
T ss_pred CEEEEEECCCCceeeEecCCCCcEEEEEECCCCC---------EEEEEeCCCeEEEEEeccCceeeeecCC-ceEEeeec
Confidence 9999999999999999999999999999999875 7999999999999999999999888854 68999999
Q ss_pred cCCCCEEEEEeCCCcEEEEecCCCeeEEEEec----------CCCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496 500 SPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG----------NGGIFEVCWNKEGDKIAACFANHTVCVLDFR 562 (563)
Q Consensus 500 spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~----------~~~i~~l~w~~~g~~la~~~~~~~v~v~~~~ 562 (563)
+|++.+++ ++.|+.|+|||++++.++..+.. ...|++++|+|+|++||+|+.||.|+|||++
T Consensus 265 ~~~~~~~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~ 336 (340)
T 4aow_A 265 SPNRYWLC-AATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVT 336 (340)
T ss_dssp CSSSSEEE-EEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred CCCCceee-ccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCC
Confidence 99987655 56699999999999888777642 3568999999999999999999999999986
No 50
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=2.6e-38 Score=321.03 Aligned_cols=280 Identities=18% Similarity=0.309 Sum_probs=252.6
Q ss_pred ccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCc-------eeEeeccCCCCEEEEEeCCC----C---CEEEEeeCC
Q 008496 271 NEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD-------LKCTLSKHKGPIFSLKWNKK----G---DYLLTGSCD 336 (563)
Q Consensus 271 ~~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~-------~~~~~~~h~~~V~~l~~~~~----~---~~l~s~s~D 336 (563)
..|...|++++|+| ++|++|+.||.|++|+.... ....+.+|..+|++++|+|+ + ++|++++.|
T Consensus 13 ~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~d 90 (397)
T 1sq9_A 13 KAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFS 90 (397)
T ss_dssp SCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETT
T ss_pred hhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCC
Confidence 35678899999999 89999999999999998654 47788899999999999999 9 999999999
Q ss_pred CcEEEEECCCCce-----eEEeeec-----ccCeEEEecC----C-Cce-EEEEeCCCeEEEEEcCC------Cccee--
Q 008496 337 KTAIVWDVKTEEW-----KQQFEFH-----SGPTLDVDWR----N-NVS-FATSSTDNMIYVCKIGE------NRPIK-- 392 (563)
Q Consensus 337 ~~v~iwd~~~~~~-----~~~~~~~-----~~~~~~~~~~----~-~~~-~~~~~~d~~i~~~~~~~------~~~~~-- 392 (563)
+.|++||+.++.. ...+..+ ...+.++.|. + ... +++++.|+.|++|++.. ...+.
T Consensus 91 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 170 (397)
T 1sq9_A 91 GDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWS 170 (397)
T ss_dssp SCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCC
T ss_pred CCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeecc
Confidence 9999999988876 7777777 5889999998 4 445 88899999999999988 66655
Q ss_pred ---ee-------cCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecc---c---CCCEEEEEEccCCCCCC
Q 008496 393 ---TF-------AGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLRE---H---SKEIYTIRWSPTGSGTN 456 (563)
Q Consensus 393 ---~~-------~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~---~---~~~i~~~~~~p~~~~~~ 456 (563)
.+ ..|...|.+++|+|++ +|++|+.|+.|++||+++++.+..+.. | ...|.+++|+|++.
T Consensus 171 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~--- 246 (397)
T 1sq9_A 171 PTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGS--- 246 (397)
T ss_dssp CEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTT---
T ss_pred CcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCC---
Confidence 67 4488899999999999 999999999999999999999999988 8 99999999999875
Q ss_pred CCCCcEEEEEEeCC---CeEEEEeCCCCeEEEEecC-------------CCCCEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 008496 457 NPNQQLILASASFD---STVKLWDVELGKLLYSLNG-------------HREPVYSLAFSPTGEYLASGSLDKSMHIWSL 520 (563)
Q Consensus 457 ~~~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~-------------h~~~i~~l~~spdg~~lasgs~dg~v~iw~~ 520 (563)
+|++++.| |.|++||+++++.+..+.+ |..+|.+++|+|++++|++|+.||.|+|||+
T Consensus 247 ------~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 320 (397)
T 1sq9_A 247 ------LLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDV 320 (397)
T ss_dssp ------EEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEET
T ss_pred ------EEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEc
Confidence 78999999 9999999999999999998 9999999999999999999999999999999
Q ss_pred CCCeeEEEEe------c----------------CCCEEEEEEcCCC----------CEEEEEECCCeEEEEEee
Q 008496 521 KEGKIVKTYT------G----------------NGGIFEVCWNKEG----------DKIAACFANHTVCVLDFR 562 (563)
Q Consensus 521 ~~~~~~~~~~------~----------------~~~i~~l~w~~~g----------~~la~~~~~~~v~v~~~~ 562 (563)
.+++++..+. . ...|.+++|+|+| +.|++|+.|+.|.|||++
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 394 (397)
T 1sq9_A 321 KTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREA 394 (397)
T ss_dssp TTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEE
T ss_pred CCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcC
Confidence 9999999988 4 5679999999999 799999999999999986
No 51
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.1e-38 Score=320.58 Aligned_cols=291 Identities=16% Similarity=0.241 Sum_probs=242.7
Q ss_pred EecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEE
Q 008496 210 ILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLL 289 (563)
Q Consensus 210 ~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l 289 (563)
++..|..+|++++|+|++++||+|+.|+.|++|++.++.. .....+ ..+...|++++|+|++++|
T Consensus 3 ~~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~-----------~~~~~~----~~h~~~v~~~~~~~~~~~l 67 (372)
T 1k8k_C 3 YHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKW-----------VQVHEL----KEHNGQVTGVDWAPDSNRI 67 (372)
T ss_dssp EEESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEE-----------EEEEEE----ECCSSCEEEEEEETTTTEE
T ss_pred eecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcE-----------Eeeeee----cCCCCcccEEEEeCCCCEE
Confidence 3456899999999999999999999999999999875420 011222 2346789999999999999
Q ss_pred EEEeCCCeEEEEEcCCce---eEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecC
Q 008496 290 ATGSYDGQARIWSTNGDL---KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR 366 (563)
Q Consensus 290 ~sg~~dg~i~vw~~~~~~---~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 366 (563)
++|+.||.|++|+..... ...+..|...|.+++|+|++++|++++.|+.|++||+.++......
T Consensus 68 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~------------- 134 (372)
T 1k8k_C 68 VTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVC------------- 134 (372)
T ss_dssp EEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEE-------------
T ss_pred EEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceee-------------
Confidence 999999999999986542 3345779999999999999999999999999999998765421100
Q ss_pred CCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeC------------------C
Q 008496 367 NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNM------------------K 428 (563)
Q Consensus 367 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~------------------~ 428 (563)
.....+|...|.+++|+|++++|++|+.|+.|++||+ .
T Consensus 135 ------------------------~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~ 190 (372)
T 1k8k_C 135 ------------------------KHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMP 190 (372)
T ss_dssp ------------------------EEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCC
T ss_pred ------------------------eeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccc
Confidence 1123467889999999999999999999999999995 3
Q ss_pred CCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEE
Q 008496 429 QDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLAS 508 (563)
Q Consensus 429 ~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~las 508 (563)
.+..+..+..|...|.+++|+|++. +|++++.||.|++||+++++++..+..|..+|.+++|+|++.+|++
T Consensus 191 ~~~~~~~~~~~~~~v~~~~~~~~~~---------~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 261 (372)
T 1k8k_C 191 FGELMFESSSSCGWVHGVCFSANGS---------RVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAA 261 (372)
T ss_dssp TTCEEEECCCCSSCEEEEEECSSSS---------EEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEE
T ss_pred hhhheEecCCCCCeEEEEEECCCCC---------EEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEE
Confidence 6678888889999999999999875 7899999999999999999999999999999999999999999988
Q ss_pred EeCCCcEEEEecCC--Cee--E------------------------------------EEE--ecCCCEEEEEEc-CCC-
Q 008496 509 GSLDKSMHIWSLKE--GKI--V------------------------------------KTY--TGNGGIFEVCWN-KEG- 544 (563)
Q Consensus 509 gs~dg~v~iw~~~~--~~~--~------------------------------------~~~--~~~~~i~~l~w~-~~g- 544 (563)
| .|+.|++|++.+ ++. + ..+ .....|.+++|. ++|
T Consensus 262 ~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~ 340 (372)
T 1k8k_C 262 G-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKA 340 (372)
T ss_dssp E-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTT
T ss_pred E-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCc
Confidence 8 899999999987 531 0 111 224579999977 677
Q ss_pred --CEEEEEECCCeEEEEEee
Q 008496 545 --DKIAACFANHTVCVLDFR 562 (563)
Q Consensus 545 --~~la~~~~~~~v~v~~~~ 562 (563)
++|++|+.||.|.|||++
T Consensus 341 ~~~~l~s~~~Dg~i~~W~~~ 360 (372)
T 1k8k_C 341 KCSQFCTTGMDGGMSIWDVR 360 (372)
T ss_dssp SCSEEEEEETTSEEEEEEHH
T ss_pred ceeeEEEecCCCceEEEEec
Confidence 999999999999999975
No 52
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=9.8e-39 Score=318.91 Aligned_cols=292 Identities=20% Similarity=0.343 Sum_probs=240.3
Q ss_pred eEecCCCCceEEEEECCCCC-EEEEeeC---CCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECC
Q 008496 209 TILEGHTSEVCACAWSPAGS-LLASGSG---DSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG 284 (563)
Q Consensus 209 ~~l~~h~~~V~~~~~sp~~~-~latgs~---D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~ 284 (563)
.++.+|...|++++|+|++. ++++|+. |+.|+||++.++... .... ..+...|++++|+|
T Consensus 12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~-----------~~~~-----~~~~~~v~~~~~~~ 75 (357)
T 3i2n_A 12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLK-----------LLRE-----IEKAKPIKCGTFGA 75 (357)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEE-----------EEEE-----EEESSCEEEEECTT
T ss_pred hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCccc-----------ceee-----ecccCcEEEEEEcC
Confidence 46688999999999999986 5556665 999999998764311 0111 12356899999999
Q ss_pred C---CCEEEEEeCCCeEEEEEcCC-c-eeEeeccCCCCEEEEE------eCCCCCEEEEeeCCCcEEEEECCCCc-eeEE
Q 008496 285 E---GTLLATGSYDGQARIWSTNG-D-LKCTLSKHKGPIFSLK------WNKKGDYLLTGSCDKTAIVWDVKTEE-WKQQ 352 (563)
Q Consensus 285 ~---g~~l~sg~~dg~i~vw~~~~-~-~~~~~~~h~~~V~~l~------~~~~~~~l~s~s~D~~v~iwd~~~~~-~~~~ 352 (563)
+ |.+|++|+.||.|++|+... . ....+.+|..+|.++. |+|++++|++++.|++|++||++++. ....
T Consensus 76 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~ 155 (357)
T 3i2n_A 76 TSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVAN 155 (357)
T ss_dssp CCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEE
T ss_pred CCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCccee
Confidence 8 79999999999999999864 3 5678889999999995 57899999999999999999999876 5666
Q ss_pred eeeccc----CeEEEe----cC-CCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECC---CCCEEEEEeCCC
Q 008496 353 FEFHSG----PTLDVD----WR-NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP---TGSLLASCSDDV 420 (563)
Q Consensus 353 ~~~~~~----~~~~~~----~~-~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~---~~~~las~s~dg 420 (563)
+..+.+ .+.++. |. +...+++++.|+.|++|++....... ...|...|.+++|+| ++.+|++|+.||
T Consensus 156 ~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg 234 (357)
T 3i2n_A 156 MEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRW-ETNIKNGVCSLEFDRKDISMNKLVATSLEG 234 (357)
T ss_dssp ECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEESCSSSSCCEEEEEESTT
T ss_pred ccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceee-ecCCCCceEEEEcCCCCCCCCEEEEECCCC
Confidence 665544 666776 43 45678889999999999998887644 466889999999999 999999999999
Q ss_pred cEEEEeCCCCceeeeec-----ccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC--------------
Q 008496 421 TAKIWNMKQDKYVHDLR-----EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG-------------- 481 (563)
Q Consensus 421 ~i~iwd~~~~~~~~~~~-----~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~-------------- 481 (563)
.|++||++++.....+. .|...|++++|+|++. .+|++|+.||.|++||++.+
T Consensus 235 ~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~ 306 (357)
T 3i2n_A 235 KFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNR--------ELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMG 306 (357)
T ss_dssp EEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEE--------EEEEEEETTSEEEEEEEECCSCC--CCTTSCCCC
T ss_pred eEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCC--------cEEEEEeCCCcEEEeecCCCcccccccCCCCccc
Confidence 99999998776655444 8999999999999763 37999999999999998753
Q ss_pred -----eEEEEecCCCCCEEEEEEcCCCCEEE-EEeCCCcEEEEecCCCee
Q 008496 482 -----KLLYSLNGHREPVYSLAFSPTGEYLA-SGSLDKSMHIWSLKEGKI 525 (563)
Q Consensus 482 -----~~~~~~~~h~~~i~~l~~spdg~~la-sgs~dg~v~iw~~~~~~~ 525 (563)
+++..+.+|..+|++++|+|+|++|+ +|+.||.|+||++.+.+.
T Consensus 307 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 307 VAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLNK 356 (357)
T ss_dssp CCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC---
T ss_pred cccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCccc
Confidence 46778899999999999999999998 899999999999987653
No 53
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=3.6e-37 Score=304.78 Aligned_cols=285 Identities=18% Similarity=0.336 Sum_probs=249.0
Q ss_pred ecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEE
Q 008496 211 LEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLA 290 (563)
Q Consensus 211 l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~ 290 (563)
..+|...|++++|+|++++|++++ |+.+++|++.++..... . ..+. ...+...|++++|+|++++|+
T Consensus 47 ~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~-----~--~~~~-----~~~~~~~v~~~~~~~~~~~l~ 113 (337)
T 1gxr_A 47 TLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSP-----V--SQLD-----CLNRDNYIRSCKLLPDGCTLI 113 (337)
T ss_dssp EECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSC-----S--EEEE-----CSCTTSBEEEEEECTTSSEEE
T ss_pred eccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceee-----e--eccc-----ccCCCCcEEEEEEcCCCCEEE
Confidence 357999999999999999999998 99999999976532110 0 0111 113457899999999999999
Q ss_pred EEeCCCeEEEEEcCCc---eeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCC
Q 008496 291 TGSYDGQARIWSTNGD---LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN 367 (563)
Q Consensus 291 sg~~dg~i~vw~~~~~---~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 367 (563)
+++.||.|++|+.... ....+..|...|.+++|+|++++|++++.|+.|++||+++++....+..|...+.++.|.+
T Consensus 114 ~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~ 193 (337)
T 1gxr_A 114 VGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISN 193 (337)
T ss_dssp EEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT
T ss_pred EEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECC
Confidence 9999999999998753 4556788999999999999999999999999999999999999888988999999999975
Q ss_pred C-ceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEE
Q 008496 368 N-VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTI 446 (563)
Q Consensus 368 ~-~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~ 446 (563)
+ ..+++++.|+.|++|++...+++..+. |...+.+++|+|++++|++++.|+.|++||+.+.... .+..|...|.++
T Consensus 194 ~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~~~~~v~~~ 271 (337)
T 1gxr_A 194 DGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSL 271 (337)
T ss_dssp TSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEE
T ss_pred CCCEEEEEecCCcEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-EEcCCccceeEE
Confidence 4 578889999999999999888777764 7788999999999999999999999999999887654 577899999999
Q ss_pred EEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 008496 447 RWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSL 520 (563)
Q Consensus 447 ~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~ 520 (563)
+|+|++. +|++++.||.|++||+.+++.+... .|..+|.+++|+|++++|++++.||.|++|++
T Consensus 272 ~~~~~~~---------~l~~~~~dg~i~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 272 KFAYCGK---------WFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp EECTTSS---------EEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred EECCCCC---------EEEEecCCCcEEEEECCCCeEEEEe-cCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 9999875 7899999999999999999888554 47889999999999999999999999999996
No 54
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=2.1e-37 Score=314.96 Aligned_cols=342 Identities=17% Similarity=0.226 Sum_probs=242.8
Q ss_pred ceeEecCCCCceEEEEECC-CCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECC-
Q 008496 207 DVTILEGHTSEVCACAWSP-AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG- 284 (563)
Q Consensus 207 ~~~~l~~h~~~V~~~~~sp-~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~- 284 (563)
...++.+|.+.|++++|+| ++++||+|+.||.|++|++.++......... ............+...|++++|+|
T Consensus 35 ~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~v~~~~~~~~ 110 (408)
T 4a11_B 35 DRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCK----AVCSIGRDHPDVHRYSVETVQWYPH 110 (408)
T ss_dssp TEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEEC----EEEEECTTCTTCCSSCEEEEEECTT
T ss_pred ceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEecc----ccccccccccccCCCcEEEEEEccC
Confidence 3467789999999999999 9999999999999999999875432211000 000111122234678899999999
Q ss_pred CCCEEEEEeCCCeEEEEEcCCceeEeeccCCCCEEEEEeCCCC---CEEEEeeCCCcEEEEECCCCceeEEeeecccCeE
Q 008496 285 EGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKG---DYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTL 361 (563)
Q Consensus 285 ~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~---~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~ 361 (563)
++.+|++++.||.|++|+...........+...+.++.|+|.+ .++++++.|+.|++||++++.....+..|..++.
T Consensus 111 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~ 190 (408)
T 4a11_B 111 DTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEIL 190 (408)
T ss_dssp CTTCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEE
T ss_pred CCcEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEE
Confidence 7889999999999999998765544444588899999999854 4999999999999999999999999999999999
Q ss_pred EEecCCCc--eEEEEeCCCeEEEEEcCCCc-ceeee---------------cCCCcceeEEEECCCCCEEEEEeCCCcEE
Q 008496 362 DVDWRNNV--SFATSSTDNMIYVCKIGENR-PIKTF---------------AGHQGEVNCVKWDPTGSLLASCSDDVTAK 423 (563)
Q Consensus 362 ~~~~~~~~--~~~~~~~d~~i~~~~~~~~~-~~~~~---------------~~h~~~i~~~~~~~~~~~las~s~dg~i~ 423 (563)
++.|.++. .+++++.|+.|++|++.... ++..+ .+|...|.+++|+|++++|++++.||.|+
T Consensus 191 ~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 270 (408)
T 4a11_B 191 AVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMR 270 (408)
T ss_dssp EEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred EEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEE
Confidence 99997664 48899999999999997654 33333 57889999999999999999999999999
Q ss_pred EEeCCCCceeeeecccCC----CEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEE
Q 008496 424 IWNMKQDKYVHDLREHSK----EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAF 499 (563)
Q Consensus 424 iwd~~~~~~~~~~~~~~~----~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~ 499 (563)
+||+.+++....+..+.. ......+.... ...++.++.|+.|++||+.+++++..+.+|..+|++++|
T Consensus 271 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~ 342 (408)
T 4a11_B 271 LWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGC--------SSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVF 342 (408)
T ss_dssp EEETTTCCBCCCCCCCCCCCCSSCCCCEECCSS--------SSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEE
T ss_pred EEECCCCccceeccccccccccccceeEEecCC--------CceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEE
Confidence 999998876544332211 01111111111 113566778999999999999999999999999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEecCCCeeEEEEecCCCEEEEEEcCC-CCEEEEEECCCeEEEEEee
Q 008496 500 SPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKE-GDKIAACFANHTVCVLDFR 562 (563)
Q Consensus 500 spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~-g~~la~~~~~~~v~v~~~~ 562 (563)
+|++++|++|+.||.|++|++.+++.+........ ...+++. ....+.+..++.+.||+..
T Consensus 343 s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~W~~~ 404 (408)
T 4a11_B 343 QSNFQELYSGSRDCNILAWVPSLYEPVPDDDETTT--KSQLNPAFEDAWSSSDEEGGTSAWSHP 404 (408)
T ss_dssp ETTTTEEEEEETTSCEEEEEECC-----------------------------------------
T ss_pred cCCCCEEEEECCCCeEEEEeCCCCCccCCCCceEe--ccccccccceeecccCccCceeecCCc
Confidence 99999999999999999999999887765433221 2234442 2344455677889999754
No 55
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=9.1e-38 Score=305.36 Aligned_cols=249 Identities=19% Similarity=0.333 Sum_probs=224.8
Q ss_pred ceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCC-CceEEEEeCCCeEEEEE
Q 008496 306 DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN-NVSFATSSTDNMIYVCK 384 (563)
Q Consensus 306 ~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~i~~~~ 384 (563)
.+..++.+|.+.|++++|+|++++|++|+.||+|++||+.++.....+..|..++..+.|.. ...+++++.|+.|++|+
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd 83 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFN 83 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEE
T ss_pred eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEE
Confidence 34567889999999999999999999999999999999999999999999999999998865 45688999999999999
Q ss_pred cCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCC-ceeeeecccCCCEEEEEEccCCCCCCCCCCcEE
Q 008496 385 IGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD-KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLI 463 (563)
Q Consensus 385 ~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~ 463 (563)
+.+.+.+..+.+|.+.|++++|+|++++|++|+.|++|++||++++ .....+.+|...|.+++|+|.+. .+
T Consensus 84 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~--------~~ 155 (304)
T 2ynn_A 84 YNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDP--------ST 155 (304)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCT--------TE
T ss_pred CCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCC--------CE
Confidence 9999999999999999999999999999999999999999999877 45567889999999999999532 27
Q ss_pred EEEEeCCCeEEEEeCCCCeEEEEe-cCCCCCEEEEEEcC--CCCEEEEEeCCCcEEEEecCCCeeEEEEecC-CCEEEEE
Q 008496 464 LASASFDSTVKLWDVELGKLLYSL-NGHREPVYSLAFSP--TGEYLASGSLDKSMHIWSLKEGKIVKTYTGN-GGIFEVC 539 (563)
Q Consensus 464 l~s~s~dg~i~iwd~~~~~~~~~~-~~h~~~i~~l~~sp--dg~~lasgs~dg~v~iw~~~~~~~~~~~~~~-~~i~~l~ 539 (563)
|++|+.|++|++||++.+.....+ .+|...|..++|+| ++.+|++|+.|++|+|||+++++++.++.++ ..|..++
T Consensus 156 l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~ 235 (304)
T 2ynn_A 156 FASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAV 235 (304)
T ss_dssp EEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEE
T ss_pred EEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEE
Confidence 999999999999999887765555 45668899999987 7889999999999999999999999998865 5689999
Q ss_pred EcCCCCEEEEEECCCeEEEEEee
Q 008496 540 WNKEGDKIAACFANHTVCVLDFR 562 (563)
Q Consensus 540 w~~~g~~la~~~~~~~v~v~~~~ 562 (563)
|+|++..||+|+.|++|.|||++
T Consensus 236 ~~p~~~~l~s~s~Dg~i~iWd~~ 258 (304)
T 2ynn_A 236 FHPTLPIIISGSEDGTLKIWNSS 258 (304)
T ss_dssp ECSSSSEEEEEETTSCEEEEETT
T ss_pred ECCCCCEEEEEcCCCeEEEEECC
Confidence 99999999999999999999975
No 56
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=4.8e-38 Score=320.69 Aligned_cols=246 Identities=27% Similarity=0.475 Sum_probs=231.4
Q ss_pred eEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCC-ceEEEEeCCCeEEEEEcC
Q 008496 308 KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNN-VSFATSSTDNMIYVCKIG 386 (563)
Q Consensus 308 ~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~ 386 (563)
...+.+|.++|++++|+|++.+|++|+.|++|++||+.+++....+..|...+.++.|.++ ..+++++.|+.|++|++.
T Consensus 101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~ 180 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ 180 (410)
T ss_dssp SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETT
T ss_pred eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Confidence 3457789999999999999999999999999999999999999999999999999999754 578899999999999999
Q ss_pred CCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEE
Q 008496 387 ENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILAS 466 (563)
Q Consensus 387 ~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s 466 (563)
....+..+.+|...|.+++|+|++++|++|+.|++|++||+.++.++..+.+|...|.++.|+|++. +|++
T Consensus 181 ~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~---------~l~s 251 (410)
T 1vyh_C 181 GFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGT---------LIAS 251 (410)
T ss_dssp SSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSS---------EEEE
T ss_pred CCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCC---------EEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999875 7999
Q ss_pred EeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCC--------------------CCEEEEEeCCCcEEEEecCCCeeE
Q 008496 467 ASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPT--------------------GEYLASGSLDKSMHIWSLKEGKIV 526 (563)
Q Consensus 467 ~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spd--------------------g~~lasgs~dg~v~iw~~~~~~~~ 526 (563)
|+.|++|++||+.++++...+.+|..+|.+++|+|+ |.+|++|+.|+.|++||+.+++++
T Consensus 252 ~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~ 331 (410)
T 1vyh_C 252 CSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCL 331 (410)
T ss_dssp EETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEE
T ss_pred EcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceE
Confidence 999999999999999999999999999999999997 678999999999999999999999
Q ss_pred EEEecC-CCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496 527 KTYTGN-GGIFEVCWNKEGDKIAACFANHTVCVLDFR 562 (563)
Q Consensus 527 ~~~~~~-~~i~~l~w~~~g~~la~~~~~~~v~v~~~~ 562 (563)
.++.++ ..|.+++|+|+|++|++|+.|+.|.|||++
T Consensus 332 ~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~ 368 (410)
T 1vyh_C 332 MTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYK 368 (410)
T ss_dssp EEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCT
T ss_pred EEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence 988765 468999999999999999999999999975
No 57
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=1.9e-38 Score=327.36 Aligned_cols=301 Identities=14% Similarity=0.280 Sum_probs=232.0
Q ss_pred CCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccc--------cCCCCeEEEEECCC
Q 008496 214 HTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTN--------EKSKDVTTLDWNGE 285 (563)
Q Consensus 214 h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~V~~l~~s~~ 285 (563)
|.+.|++++|+|+|++||+|+.||.|+||++.++.......... ......+.++.. .....|++++|+|+
T Consensus 27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~--~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~ 104 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGE--YNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQ 104 (447)
T ss_dssp GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCC--EEEEEEEECCCCEEEGGGTEEECCCCCEEEECCC
T ss_pred ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccc--eeEecccccccccccccccccccCceEEEEEcCC
Confidence 67889999999999999999999999999998654211111111 111222222210 00167999999999
Q ss_pred C--CEEEEEeCCCeEEEEEcCCcee-----------------------------------------EeeccCCCCEEEEE
Q 008496 286 G--TLLATGSYDGQARIWSTNGDLK-----------------------------------------CTLSKHKGPIFSLK 322 (563)
Q Consensus 286 g--~~l~sg~~dg~i~vw~~~~~~~-----------------------------------------~~~~~h~~~V~~l~ 322 (563)
+ .+|++|+.||.|++|+...... ....+|..+|++++
T Consensus 105 ~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 184 (447)
T 3dw8_B 105 KNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSIS 184 (447)
T ss_dssp CSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEE
T ss_pred CCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEE
Confidence 8 8999999999999999753211 11367999999999
Q ss_pred eCCCCCEEEEeeCCCcEEEEECCCCc-eeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcce
Q 008496 323 WNKKGDYLLTGSCDKTAIVWDVKTEE-WKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEV 401 (563)
Q Consensus 323 ~~~~~~~l~s~s~D~~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i 401 (563)
|+|++++|++| .|++|++||+++.. ... +.++. ...+.+|...|
T Consensus 185 ~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~------------------------------~~~~~----~~~~~~~~~~v 229 (447)
T 3dw8_B 185 INSDYETYLSA-DDLRINLWHLEITDRSFN------------------------------IVDIK----PANMEELTEVI 229 (447)
T ss_dssp ECTTSSEEEEE-CSSEEEEEETTEEEEEEE------------------------------EEECC----CSSGGGCCCCE
T ss_pred EcCCCCEEEEe-CCCeEEEEECCCCCceee------------------------------eeecc----cccccccCcce
Confidence 99999999998 79999999997422 111 11111 12466899999
Q ss_pred eEEEECCCC-CEEEEEeCCCcEEEEeCCCCce----eeeecccCC------------CEEEEEEccCCCCCCCCCCcEEE
Q 008496 402 NCVKWDPTG-SLLASCSDDVTAKIWNMKQDKY----VHDLREHSK------------EIYTIRWSPTGSGTNNPNQQLIL 464 (563)
Q Consensus 402 ~~~~~~~~~-~~las~s~dg~i~iwd~~~~~~----~~~~~~~~~------------~i~~~~~~p~~~~~~~~~~~~~l 464 (563)
++++|+|++ ++|++|+.||+|++||++++.. +..+..|.. .|.+++|+|++. +|
T Consensus 230 ~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~---------~l 300 (447)
T 3dw8_B 230 TAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGR---------YM 300 (447)
T ss_dssp EEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSS---------EE
T ss_pred EEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCC---------EE
Confidence 999999998 9999999999999999998886 677777776 899999999875 78
Q ss_pred EEEeCCCeEEEEeCCC-CeEEEEecCCCCC---------------EEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEE
Q 008496 465 ASASFDSTVKLWDVEL-GKLLYSLNGHREP---------------VYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKT 528 (563)
Q Consensus 465 ~s~s~dg~i~iwd~~~-~~~~~~~~~h~~~---------------i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~ 528 (563)
++++. +.|++||++. ++++..+.+|... ++.++|+|+|++|++|+.||.|+|||+.+++.+..
T Consensus 301 ~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~ 379 (447)
T 3dw8_B 301 MTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITL 379 (447)
T ss_dssp EEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEE
T ss_pred EEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceee
Confidence 88888 9999999997 8888888888532 33599999999999999999999999999887642
Q ss_pred Ee---------------------------------cCCCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496 529 YT---------------------------------GNGGIFEVCWNKEGDKIAACFANHTVCVLDFR 562 (563)
Q Consensus 529 ~~---------------------------------~~~~i~~l~w~~~g~~la~~~~~~~v~v~~~~ 562 (563)
.. ....|..++|+|+|+.||+++.|+ +.+|.-+
T Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~~ 445 (447)
T 3dw8_B 380 EASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQDK 445 (447)
T ss_dssp ECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEECC
T ss_pred eecccccccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecce-eeeeccc
Confidence 21 123578899999999999998775 7788654
No 58
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.9e-37 Score=305.26 Aligned_cols=246 Identities=26% Similarity=0.402 Sum_probs=216.1
Q ss_pred ccCCCCeEEEEECCCC-CEEEEEeCCCeEEEEEcCC------ceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEE
Q 008496 271 NEKSKDVTTLDWNGEG-TLLATGSYDGQARIWSTNG------DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWD 343 (563)
Q Consensus 271 ~~~~~~V~~l~~s~~g-~~l~sg~~dg~i~vw~~~~------~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd 343 (563)
..|...|++++|+|++ ++|++|+.|+.|++|+..+ .....+.+|..+|.+++|+|++.+|++|+.|++|++||
T Consensus 14 ~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd 93 (319)
T 3frx_A 14 EGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWD 93 (319)
T ss_dssp CCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred ccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence 4567889999999965 8999999999999999753 23457889999999999999999999999999999999
Q ss_pred CCCCceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEE
Q 008496 344 VKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAK 423 (563)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~ 423 (563)
+.+++.. ..+.+|...|.+++|+|++.+|++|+.|++|+
T Consensus 94 ~~~~~~~-----------------------------------------~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~ 132 (319)
T 3frx_A 94 VATGETY-----------------------------------------QRFVGHKSDVMSVDIDKKASMIISGSRDKTIK 132 (319)
T ss_dssp TTTTEEE-----------------------------------------EEEECCSSCEEEEEECTTSCEEEEEETTSCEE
T ss_pred CCCCCee-----------------------------------------EEEccCCCcEEEEEEcCCCCEEEEEeCCCeEE
Confidence 9876432 34567999999999999999999999999999
Q ss_pred EEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCC
Q 008496 424 IWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTG 503 (563)
Q Consensus 424 iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg 503 (563)
+||++. ..+..+.+|...|.+++|.|..... ....+|++++.|+.|++||++.++....+.+|..+|++++|+|+|
T Consensus 133 vwd~~~-~~~~~~~~h~~~v~~~~~~~~~~~~---~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g 208 (319)
T 3frx_A 133 VWTIKG-QCLATLLGHNDWVSQVRVVPNEKAD---DDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDG 208 (319)
T ss_dssp EEETTS-CEEEEECCCSSCEEEEEECCC---------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTS
T ss_pred EEECCC-CeEEEEeccCCcEEEEEEccCCCCC---CCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCC
Confidence 999974 5677888999999999999865321 122378999999999999999999999999999999999999999
Q ss_pred CEEEEEeCCCcEEEEecCCCeeEEEEecCCCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496 504 EYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR 562 (563)
Q Consensus 504 ~~lasgs~dg~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~g~~la~~~~~~~v~v~~~~ 562 (563)
++||+|+.||.|+|||+.+++.+.++.....|.+++|+|+|..||++..+ .+.||++.
T Consensus 209 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~ 266 (319)
T 3frx_A 209 TLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATAT-GIKVFSLD 266 (319)
T ss_dssp SEEEEEETTCEEEEEETTTTEEEEEEECCSCEEEEEECSSSSEEEEEETT-EEEEEEET
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEcCCCCEEEEEcCC-CcEEEEeC
Confidence 99999999999999999999999999888899999999999999998765 58898864
No 59
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=1e-38 Score=328.46 Aligned_cols=301 Identities=19% Similarity=0.262 Sum_probs=232.2
Q ss_pred eEecCCCCceEEEEECCC-CCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECC-CC
Q 008496 209 TILEGHTSEVCACAWSPA-GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG-EG 286 (563)
Q Consensus 209 ~~l~~h~~~V~~~~~sp~-~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~-~g 286 (563)
..+.+|...|+|++|||. +++||+|+.||+|+|||+..+... ... ....|...|++|+|+| ++
T Consensus 113 ~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~-----------~~~----~~~gH~~~V~~l~f~p~~~ 177 (435)
T 4e54_B 113 QKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKP-----------TFI----KGIGAGGSITGLKFNPLNT 177 (435)
T ss_dssp CEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCC-----------EEE----CCCSSSCCCCEEEECSSCT
T ss_pred ccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCce-----------eEE----EccCCCCCEEEEEEeCCCC
Confidence 355679999999999995 679999999999999998754321 011 1124567899999998 78
Q ss_pred CEEEEEeCCCeEEEEEcCCceeEeecc---CCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEE
Q 008496 287 TLLATGSYDGQARIWSTNGDLKCTLSK---HKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 363 (563)
Q Consensus 287 ~~l~sg~~dg~i~vw~~~~~~~~~~~~---h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~ 363 (563)
.+|++|+.||+|++||..+.....+.. +...+.+++|+|++.+|++|+.||+|++||++.. .+..+..|...+.++
T Consensus 178 ~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~-~~~~~~~h~~~v~~v 256 (435)
T 4e54_B 178 NQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK-ELWNLRMHKKKVTHV 256 (435)
T ss_dssp TEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC-BCCCSBCCSSCEEEE
T ss_pred CEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc-eeEEEecccceEEee
Confidence 999999999999999998765544433 3446789999999999999999999999998754 455677888999999
Q ss_pred ecCCC--ceEEEEeCCCeEEEEEcCCCccee---eecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecc
Q 008496 364 DWRNN--VSFATSSTDNMIYVCKIGENRPIK---TFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLRE 438 (563)
Q Consensus 364 ~~~~~--~~~~~~~~d~~i~~~~~~~~~~~~---~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~ 438 (563)
.|.+. ..+++++.|+.|++|++....... ...+|...|++++|+|+|++|++|+.||+|+|||+.++.....+..
T Consensus 257 ~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~ 336 (435)
T 4e54_B 257 ALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIP 336 (435)
T ss_dssp EECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECC
T ss_pred eecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEec
Confidence 99654 467889999999999998765433 3467999999999999999999999999999999999887776665
Q ss_pred cCC------CEEEEEEccCCCCC---CCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEec-CCCCCEEEE-EEcCCCCEEE
Q 008496 439 HSK------EIYTIRWSPTGSGT---NNPNQQLILASASFDSTVKLWDVELGKLLYSLN-GHREPVYSL-AFSPTGEYLA 507 (563)
Q Consensus 439 ~~~------~i~~~~~~p~~~~~---~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~h~~~i~~l-~~spdg~~la 507 (563)
|.. .+....|+|.+... ..++...+++++..++.|++||..+++++..+. +|...|.++ +|||+|++||
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~la 416 (435)
T 4e54_B 337 HPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLA 416 (435)
T ss_dssp CCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEE
T ss_pred ccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEE
Confidence 542 23345666655310 011111222233345689999999999988864 688889887 6999999999
Q ss_pred EEeCCCcEEEEecCCCeeE
Q 008496 508 SGSLDKSMHIWSLKEGKIV 526 (563)
Q Consensus 508 sgs~dg~v~iw~~~~~~~~ 526 (563)
+|+ |+.|+||++++|+..
T Consensus 417 sg~-d~~i~iW~~~~gk~r 434 (435)
T 4e54_B 417 SAM-GYHILIWSQQEARTR 434 (435)
T ss_dssp EEC-SSEEEECCCC-----
T ss_pred EEc-CCcEEEEECCcCeee
Confidence 886 789999999988753
No 60
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=5e-38 Score=314.30 Aligned_cols=252 Identities=21% Similarity=0.289 Sum_probs=206.5
Q ss_pred EecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEE
Q 008496 210 ILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLL 289 (563)
Q Consensus 210 ~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l 289 (563)
...+|...|++++|+|++.+ ++++.||+|+|||+.++...... ......|...|++++|+|+|++|
T Consensus 89 ~~~~~~~~V~~~~~s~d~~~-l~~s~dg~v~lWd~~~~~~~~~~-------------~~~~~~h~~~V~~v~~spdg~~l 154 (357)
T 4g56_B 89 AGVQTEAGVTDVAWVSEKGI-LVASDSGAVELWEILEKESLLVN-------------KFAKYEHDDIVKTLSVFSDGTQA 154 (357)
T ss_dssp EEEECSSCEEEEEEETTTEE-EEEETTSCEEEC--------CCC-------------CEEECCCSSCEEEEEECSSSSEE
T ss_pred ccCCCCCCEEEEEEcCCCCE-EEEECCCEEEEeeccccceeEEE-------------eeccCCCCCCEEEEEECCCCCEE
Confidence 34578999999999999765 56788999999998765421100 00112356789999999999999
Q ss_pred EEEeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCC-EEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCC
Q 008496 290 ATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGD-YLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN 367 (563)
Q Consensus 290 ~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 367 (563)
++|+.||.|++||.. +.....+.+|...|++++|+|++. .+++++.|++|++||+++++....+
T Consensus 155 ~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~-------------- 220 (357)
T 4g56_B 155 VSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRI-------------- 220 (357)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBC--------------
T ss_pred EEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeee--------------
Confidence 999999999999976 566778899999999999999885 7899999999999999876533211
Q ss_pred CceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCC-CCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEE
Q 008496 368 NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT-GSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTI 446 (563)
Q Consensus 368 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~-~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~ 446 (563)
.+..|...+.+++|+|+ +.+|++|+.|+.|++||+++++.+..+..|...|+++
T Consensus 221 -------------------------~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l 275 (357)
T 4g56_B 221 -------------------------DFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGL 275 (357)
T ss_dssp -------------------------CCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEE
T ss_pred -------------------------eeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEE
Confidence 22346677899999997 5689999999999999999999999999999999999
Q ss_pred EEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEecCCC
Q 008496 447 RWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSP-TGEYLASGSLDKSMHIWSLKEG 523 (563)
Q Consensus 447 ~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp-dg~~lasgs~dg~v~iw~~~~~ 523 (563)
+|+|++. .+|++|+.|++|+|||+++++++..+ +|..+|++|+||| |+.+||+||.||+|++|++...
T Consensus 276 ~~sp~~~--------~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 276 AYSYHSS--------PFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp EECSSSS--------CCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC--
T ss_pred EEcCCCC--------CEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence 9999864 27899999999999999999887655 7999999999999 7999999999999999999653
No 61
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.3e-37 Score=299.02 Aligned_cols=273 Identities=23% Similarity=0.316 Sum_probs=243.9
Q ss_pred cCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCC-ceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCC---
Q 008496 272 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE--- 347 (563)
Q Consensus 272 ~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~--- 347 (563)
.|...|++++| +++.+|++|+.||.|++|+... .....+..|..+|.+++|+|++++|++++.|+.+++|++...
T Consensus 16 ~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~ 94 (313)
T 3odt_A 16 GHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGE 94 (313)
T ss_dssp CCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTS
T ss_pred CCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCC
Confidence 45678999999 9999999999999999999764 456678889999999999999999999999999999998654
Q ss_pred ceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECC-CCCEEEEEeCCCcEEEEe
Q 008496 348 EWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP-TGSLLASCSDDVTAKIWN 426 (563)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~-~~~~las~s~dg~i~iwd 426 (563)
.....+..|..++.++.| +...+++++.|+.|++|+ ...++..+.+|...+.+++|+| ++++|++++.|+.|++||
T Consensus 95 ~~~~~~~~~~~~i~~~~~-~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d 171 (313)
T 3odt_A 95 DPLYTLIGHQGNVCSLSF-QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ 171 (313)
T ss_dssp CC-CEECCCSSCEEEEEE-ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred CcccchhhcccCEEEEEe-cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe
Confidence 456667788889999999 566889999999999999 6677888899999999999988 899999999999999999
Q ss_pred CCCCceeeeecc-cCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCE
Q 008496 427 MKQDKYVHDLRE-HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEY 505 (563)
Q Consensus 427 ~~~~~~~~~~~~-~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~ 505 (563)
.......+.. |...+.+++|+|++ .+++++.||.|++||+++++.+..+.+|..+|++++|+|++ .
T Consensus 172 --~~~~~~~~~~~~~~~i~~~~~~~~~----------~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~ 238 (313)
T 3odt_A 172 --NDKVIKTFSGIHNDVVRHLAVVDDG----------HFISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-D 238 (313)
T ss_dssp --TTEEEEEECSSCSSCEEEEEEEETT----------EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-C
T ss_pred --cCceEEEEeccCcccEEEEEEcCCC----------eEEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-C
Confidence 4555666666 89999999999976 38899999999999999999999999999999999999999 6
Q ss_pred EEEEeCCCcEEEEecCCCeeEEEEecCC-CEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496 506 LASGSLDKSMHIWSLKEGKIVKTYTGNG-GIFEVCWNKEGDKIAACFANHTVCVLDFR 562 (563)
Q Consensus 506 lasgs~dg~v~iw~~~~~~~~~~~~~~~-~i~~l~w~~~g~~la~~~~~~~v~v~~~~ 562 (563)
|++|+.||.|++||+.+++++..+..+. .|..++|+|+|+ +++++.|+.|.|||++
T Consensus 239 l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~ 295 (313)
T 3odt_A 239 IVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQE 295 (313)
T ss_dssp EEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESC
T ss_pred EEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCC
Confidence 8999999999999999999998887654 799999999998 5568899999999975
No 62
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1.7e-37 Score=302.42 Aligned_cols=252 Identities=24% Similarity=0.436 Sum_probs=207.7
Q ss_pred cCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCC---ceeEeeccCCCCEEEEEeCCC--CCEEEEeeCCCcEEEEECCC
Q 008496 272 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNG---DLKCTLSKHKGPIFSLKWNKK--GDYLLTGSCDKTAIVWDVKT 346 (563)
Q Consensus 272 ~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~---~~~~~~~~h~~~V~~l~~~~~--~~~l~s~s~D~~v~iwd~~~ 346 (563)
.|...|++++|+|+|++|++|+.||.|+||+..+ ....++.+|.++|++++|++. +++|++|+.|++|++||+.+
T Consensus 7 ~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~ 86 (297)
T 2pm7_B 7 AHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEEN 86 (297)
T ss_dssp SCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSS
T ss_pred CCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCC
Confidence 4567899999999999999999999999999863 456788999999999999863 89999999999999999876
Q ss_pred CceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCC--CCEEEEEeCCCcEEE
Q 008496 347 EEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT--GSLLASCSDDVTAKI 424 (563)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~--~~~las~s~dg~i~i 424 (563)
+.+. .+..+.+|...|++++|+|+ +.+|++|+.|++|++
T Consensus 87 ~~~~---------------------------------------~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~ 127 (297)
T 2pm7_B 87 GRWS---------------------------------------QIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSV 127 (297)
T ss_dssp SCBC---------------------------------------CCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEE
T ss_pred CceE---------------------------------------EEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEE
Confidence 5311 12345678899999999998 899999999999999
Q ss_pred EeCCCCce--eeeecccCCCEEEEEEccCCCCCC----CCCCcEEEEEEeCCCeEEEEeCCCCe----EEEEecCCCCCE
Q 008496 425 WNMKQDKY--VHDLREHSKEIYTIRWSPTGSGTN----NPNQQLILASASFDSTVKLWDVELGK----LLYSLNGHREPV 494 (563)
Q Consensus 425 wd~~~~~~--~~~~~~~~~~i~~~~~~p~~~~~~----~~~~~~~l~s~s~dg~i~iwd~~~~~----~~~~~~~h~~~i 494 (563)
||+++... ...+.+|...|.+++|+|++.... .+....+|++|+.|++|+|||++.++ +...+.+|..+|
T Consensus 128 wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V 207 (297)
T 2pm7_B 128 VEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWV 207 (297)
T ss_dssp EEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCE
T ss_pred EEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCce
Confidence 99987632 356678999999999999742100 00112379999999999999998765 667889999999
Q ss_pred EEEEEcCCC---CEEEEEeCCCcEEEEecCCCe--eE-EEE---ecCCCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496 495 YSLAFSPTG---EYLASGSLDKSMHIWSLKEGK--IV-KTY---TGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR 562 (563)
Q Consensus 495 ~~l~~spdg---~~lasgs~dg~v~iw~~~~~~--~~-~~~---~~~~~i~~l~w~~~g~~la~~~~~~~v~v~~~~ 562 (563)
.+++|+|++ .+||+|+.|++|+|||+.++. .. ..+ .....|++++|+|+|++||+++.|+.|.||+.+
T Consensus 208 ~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 208 RDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp EEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred EEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 999999995 899999999999999997643 11 222 124579999999999999999999999999875
No 63
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3e-39 Score=325.75 Aligned_cols=288 Identities=16% Similarity=0.186 Sum_probs=225.5
Q ss_pred EecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEE
Q 008496 210 ILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLL 289 (563)
Q Consensus 210 ~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l 289 (563)
++..|..+|++++|+|++++||+|+.|+.|+||++.++.. ........+...|++++|+|++++|
T Consensus 6 ~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~---------------~~~~~~~~h~~~v~~~~~s~~~~~l 70 (377)
T 3dwl_C 6 VLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGW---------------KHARTFSDHDKIVTCVDWAPKSNRI 70 (377)
T ss_dssp EEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEE---------------EECCCBCCCSSCEEEEEECTTTCCE
T ss_pred eEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCce---------------EEEEEEecCCceEEEEEEeCCCCEE
Confidence 3445678899999999999999999999999999875410 0111123456789999999999999
Q ss_pred EEEeCCCeEEEEEcCCce----eEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEec
Q 008496 290 ATGSYDGQARIWSTNGDL----KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW 365 (563)
Q Consensus 290 ~sg~~dg~i~vw~~~~~~----~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 365 (563)
++|+.||.|++|+..... ...+..|..+|++++|+|++++|++|+.|++|++||++++...
T Consensus 71 ~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~--------------- 135 (377)
T 3dwl_C 71 VTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDW--------------- 135 (377)
T ss_dssp EEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----C---------------
T ss_pred EEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccc---------------
Confidence 999999999999986543 5677889999999999999999999999999999998765310
Q ss_pred CCCceEEEEeCCCeEEEEEcCCCcceeeecC-CCcceeEEEECCCCCEEEEEeCCCcEEEEeCC----------------
Q 008496 366 RNNVSFATSSTDNMIYVCKIGENRPIKTFAG-HQGEVNCVKWDPTGSLLASCSDDVTAKIWNMK---------------- 428 (563)
Q Consensus 366 ~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~-h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~---------------- 428 (563)
.....+.+ |...|.+++|+|++++|++|+.|++|++||+.
T Consensus 136 -----------------------~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 192 (377)
T 3dwl_C 136 -----------------------WVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSR 192 (377)
T ss_dssp -----------------------CCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSC
T ss_pred -----------------------eeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccc
Confidence 01234455 88999999999999999999999999999985
Q ss_pred --CCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeE----EEEecCCCCCEEEEEEcCC
Q 008496 429 --QDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL----LYSLNGHREPVYSLAFSPT 502 (563)
Q Consensus 429 --~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~----~~~~~~h~~~i~~l~~spd 502 (563)
.+.++..+ .|...|++++|+|++. +|++++.||.|++||+.++++ +..+.+|..+|.+++|+|+
T Consensus 193 ~~~~~~~~~~-~~~~~v~~~~~sp~~~---------~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 262 (377)
T 3dwl_C 193 LPFNTVCAEY-PSGGWVHAVGFSPSGN---------ALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANE 262 (377)
T ss_dssp CCEEEEEECC-CCSSSEEEEEECTTSS---------CEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEET
T ss_pred cchhhhhhcc-cCCceEEEEEECCCCC---------EEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCC
Confidence 34456666 8999999999999875 689999999999999998876 7788899999999999999
Q ss_pred CCEEEEEeCCCcEEEEecCCCe--e-------------------------E---------EEEe----------------
Q 008496 503 GEYLASGSLDKSMHIWSLKEGK--I-------------------------V---------KTYT---------------- 530 (563)
Q Consensus 503 g~~lasgs~dg~v~iw~~~~~~--~-------------------------~---------~~~~---------------- 530 (563)
|++|++|+.++.+ +|+...+. . . ..+.
T Consensus 263 ~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 341 (377)
T 3dwl_C 263 SAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPT 341 (377)
T ss_dssp TEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSS
T ss_pred CCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccccccccccchhhccccccccccCc
Confidence 9999999877766 66654211 0 0 1111
Q ss_pred -cCCCEEEEEEcCCC-C---EEEEEECCCeEEEEEe
Q 008496 531 -GNGGIFEVCWNKEG-D---KIAACFANHTVCVLDF 561 (563)
Q Consensus 531 -~~~~i~~l~w~~~g-~---~la~~~~~~~v~v~~~ 561 (563)
+...|.+++|.+.+ . .|++|+.||.|+|||+
T Consensus 342 ~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 342 VHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp SCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred cccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 33568899876543 3 6999999999999986
No 64
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.1e-38 Score=322.38 Aligned_cols=310 Identities=14% Similarity=0.211 Sum_probs=248.6
Q ss_pred EECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECC-CCCEEEEEeCCCeEEE
Q 008496 222 AWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG-EGTLLATGSYDGQARI 300 (563)
Q Consensus 222 ~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~-~g~~l~sg~~dg~i~v 300 (563)
.|+|++..+++++ .|+... . .+..+ ...|...|++++|+| ++.+|++|+.||.|+|
T Consensus 34 ~f~~~~~~~~~~~------~w~~~g-~-------------~~~~~---~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~v 90 (437)
T 3gre_A 34 EFGPIQEIVRSPN------MGNLRG-K-------------LIATL---MENEPNSITSSAVSPGETPYLITGSDQGVIKI 90 (437)
T ss_dssp GGCCCCCCCCCCC------GGGCCC-C-------------EEEEE---CTTTTSCEEEEEEECSSSCEEEEEETTSEEEE
T ss_pred hcCCccccccccc------cccccc-e-------------EEeee---ccCCCCceEEEEECCCCCCEEEEecCCceEEE
Confidence 4788888877765 376331 1 11122 123567899999999 9999999999999999
Q ss_pred EEcCC---c--eeEee-ccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECC---CCceeEEeeec------------ccC
Q 008496 301 WSTNG---D--LKCTL-SKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVK---TEEWKQQFEFH------------SGP 359 (563)
Q Consensus 301 w~~~~---~--~~~~~-~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~---~~~~~~~~~~~------------~~~ 359 (563)
|+... . ....+ ..|.++|++++|+|++++|++|+.|++|++||+. ++.....+..+ ...
T Consensus 91 wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 170 (437)
T 3gre_A 91 WNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEY 170 (437)
T ss_dssp EEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCC
T ss_pred eECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccC
Confidence 99643 1 11112 2599999999999999999999999999999994 55544433322 223
Q ss_pred eEEEe--c-CCCceEEEEeCCCeEEEEEcCCCcceeeecC--CCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceee
Q 008496 360 TLDVD--W-RNNVSFATSSTDNMIYVCKIGENRPIKTFAG--HQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVH 434 (563)
Q Consensus 360 ~~~~~--~-~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~--h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~ 434 (563)
+.++. + .+...+++++.|+.|++|++...+++..+.+ |.+.|++++|+|++++|++|+.||+|++||+++++++.
T Consensus 171 ~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~ 250 (437)
T 3gre_A 171 AVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIR 250 (437)
T ss_dssp EEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEE
T ss_pred ceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEE
Confidence 33333 2 2356789999999999999999999999988 88999999999999999999999999999999999988
Q ss_pred eec-ccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecC------------------------
Q 008496 435 DLR-EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG------------------------ 489 (563)
Q Consensus 435 ~~~-~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~------------------------ 489 (563)
.+. .|...|.+++|+|... ++ ..+|++|+.||.|++||+++++++..+.+
T Consensus 251 ~~~~~~~~~v~~~~~~~~~s----~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 325 (437)
T 3gre_A 251 SWSFGDHAPITHVEVCQFYG----KN-SVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCG 325 (437)
T ss_dssp EEBCTTCEEEEEEEECTTTC----TT-EEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCC
T ss_pred EEecCCCCceEEEEeccccC----CC-ccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecc
Confidence 876 7888999999987532 11 24789999999999999999998887764
Q ss_pred --CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEe-------------------------------------
Q 008496 490 --HREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYT------------------------------------- 530 (563)
Q Consensus 490 --h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~------------------------------------- 530 (563)
|..+|++++|+ ++++|++|+.||.|++||+.+++.+..+.
T Consensus 326 ~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (437)
T 3gre_A 326 IRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSL 404 (437)
T ss_dssp CCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-----------
T ss_pred cccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCccc
Confidence 44568888999 77999999999999999999988666554
Q ss_pred -cCCCEEEEEEcCC--CCEEEEEECCCeEEEEE
Q 008496 531 -GNGGIFEVCWNKE--GDKIAACFANHTVCVLD 560 (563)
Q Consensus 531 -~~~~i~~l~w~~~--g~~la~~~~~~~v~v~~ 560 (563)
....|.+++|+++ +.+|++|..||.|.||+
T Consensus 405 ~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 405 YHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp --CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred ccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 3457899999998 77999999999999995
No 65
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=4e-38 Score=309.67 Aligned_cols=255 Identities=24% Similarity=0.369 Sum_probs=200.5
Q ss_pred eEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECC--CC
Q 008496 209 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG--EG 286 (563)
Q Consensus 209 ~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~--~g 286 (563)
.++.+|.+.|++++|+|+|++||||+.|++|+|||+.++.. ..+..+. .|...|++++|++ ++
T Consensus 7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~-----------~~~~~l~----gH~~~V~~v~~~~~~~~ 71 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQ-----------ILIADLR----GHEGPVWQVAWAHPMYG 71 (316)
T ss_dssp -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEE-----------EEEEEEE----CCSSCEEEEEECCGGGS
T ss_pred eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCc-----------EEEEEEc----CCCccEEEEEeCCCCCC
Confidence 35679999999999999999999999999999999865321 1112222 3567899999986 48
Q ss_pred CEEEEEeCCCeEEEEEcCCc---eeEeeccCCCCEEEEEeCCC--CCEEEEeeCCCcEEEEECCCCceeEEeeecccCeE
Q 008496 287 TLLATGSYDGQARIWSTNGD---LKCTLSKHKGPIFSLKWNKK--GDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTL 361 (563)
Q Consensus 287 ~~l~sg~~dg~i~vw~~~~~---~~~~~~~h~~~V~~l~~~~~--~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~ 361 (563)
++|++|+.|+.|++|+.... ....+.+|..+|.+++|+|+ +.+|++|+.|++|++||++++....
T Consensus 72 ~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~---------- 141 (316)
T 3bg1_A 72 NILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWE---------- 141 (316)
T ss_dssp SCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEE----------
T ss_pred CEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcc----------
Confidence 99999999999999998642 45567899999999999998 7899999999999999987542100
Q ss_pred EEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCC-----------------CCEEEEEeCCCcEEE
Q 008496 362 DVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT-----------------GSLLASCSDDVTAKI 424 (563)
Q Consensus 362 ~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~-----------------~~~las~s~dg~i~i 424 (563)
....+.+|...|.+++|+|+ +++|++|+.|++|++
T Consensus 142 ----------------------------~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~l 193 (316)
T 3bg1_A 142 ----------------------------VKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKL 193 (316)
T ss_dssp ----------------------------ECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCE
T ss_pred ----------------------------eeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEE
Confidence 01234567777777777776 478999999999999
Q ss_pred EeCCCC---ceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC---e-EEEEecCCCCCEEEE
Q 008496 425 WNMKQD---KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG---K-LLYSLNGHREPVYSL 497 (563)
Q Consensus 425 wd~~~~---~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~---~-~~~~~~~h~~~i~~l 497 (563)
||++.. ..+..+.+|...|.+++|+|++.. ...+|++|+.||+|+|||+... . ....+..|..+|+++
T Consensus 194 Wd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~-----~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v 268 (316)
T 3bg1_A 194 WKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGL-----PTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHV 268 (316)
T ss_dssp EEECTTSCEEEEECCBCCSSCEEEEECCCCSSC-----SCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEE
T ss_pred EEeCCCCccceeeecccCCCceEEEEecCCCCC-----CCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEE
Confidence 999755 466788899999999999998621 0127999999999999998762 1 123345688999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEecC
Q 008496 498 AFSPTGEYLASGSLDKSMHIWSLK 521 (563)
Q Consensus 498 ~~spdg~~lasgs~dg~v~iw~~~ 521 (563)
+|+|+|++||+|+.|+.|+||+..
T Consensus 269 ~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 269 SWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp EECTTTCCEEEEESSSCEEEEEEC
T ss_pred EEcCCCCEEEEEcCCCeEEEEEEC
Confidence 999999999999999999999975
No 66
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.9e-37 Score=304.52 Aligned_cols=251 Identities=27% Similarity=0.505 Sum_probs=197.2
Q ss_pred CCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEE
Q 008496 213 GHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATG 292 (563)
Q Consensus 213 ~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg 292 (563)
+|...|++++|+|++++||+|+.|++|+||++....... .....+..+ ..|...|++++|+|+|++|++|
T Consensus 56 ~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~------~~~~~~~~~----~~h~~~V~~v~~sp~g~~las~ 125 (330)
T 2hes_X 56 AHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRT------FEMDLLAII----EGHENEVKGVAWSNDGYYLATC 125 (330)
T ss_dssp CCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------------CCCEEEEEE----C----CEEEEEECTTSCEEEEE
T ss_pred CccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCcc------ccceeEEEE----cCCCCcEEEEEECCCCCEEEEE
Confidence 399999999999999999999999999999985421100 000111122 2356789999999999999999
Q ss_pred eCCCeEEEEEcC-C----ceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCC
Q 008496 293 SYDGQARIWSTN-G----DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN 367 (563)
Q Consensus 293 ~~dg~i~vw~~~-~----~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 367 (563)
+.|+.|++|+.. . .....+.+|..+|.+++|+|++.+|++|+.|++|++||+.++..
T Consensus 126 s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~------------------ 187 (330)
T 2hes_X 126 SRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDW------------------ 187 (330)
T ss_dssp ETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEE------------------
T ss_pred eCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCe------------------
Confidence 999999999983 2 24557889999999999999999999999999999999765421
Q ss_pred CceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCC--CCEEEEEeCCCcEEEEeCCCC--------ceeeeec
Q 008496 368 NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT--GSLLASCSDDVTAKIWNMKQD--------KYVHDLR 437 (563)
Q Consensus 368 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~--~~~las~s~dg~i~iwd~~~~--------~~~~~~~ 437 (563)
.++..+.+|.+.|.+++|+|+ +.+|++|+.|++|++||+..+ .+...+.
T Consensus 188 ---------------------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~ 246 (330)
T 2hes_X 188 ---------------------ECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILP 246 (330)
T ss_dssp ---------------------EEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECC
T ss_pred ---------------------eEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecc
Confidence 124567889999999999998 778999999999999998654 3344454
Q ss_pred c-cCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe--EEEE-ecCCCC-CEEEEEEcC--CCCEEEEEe
Q 008496 438 E-HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK--LLYS-LNGHRE-PVYSLAFSP--TGEYLASGS 510 (563)
Q Consensus 438 ~-~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~--~~~~-~~~h~~-~i~~l~~sp--dg~~lasgs 510 (563)
. |...|++++|++.+ +|++++.||.|+|||...+. .+.. +.+|.. .|++++|+| ++++||+|+
T Consensus 247 ~~h~~~v~~v~~s~~~----------~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s 316 (330)
T 2hes_X 247 DVHKRQVYNVAWGFNG----------LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGG 316 (330)
T ss_dssp SCCSSCEEEEEECTTS----------CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEE
T ss_pred cccccceEEEEEcCCC----------EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEec
Confidence 4 88999999998654 58999999999999998774 3333 467877 899999999 789999999
Q ss_pred CCCcEEEEecCC
Q 008496 511 LDKSMHIWSLKE 522 (563)
Q Consensus 511 ~dg~v~iw~~~~ 522 (563)
.||+|+||++.+
T Consensus 317 ~Dg~v~~W~~~~ 328 (330)
T 2hes_X 317 DDGIVNFWSLEK 328 (330)
T ss_dssp TTSEEEEEEC--
T ss_pred CCCcEEEEEecc
Confidence 999999999864
No 67
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=5.3e-38 Score=315.05 Aligned_cols=289 Identities=14% Similarity=0.134 Sum_probs=221.9
Q ss_pred CceEEEEECCCCCEEEEeeCCC-------cEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCE
Q 008496 216 SEVCACAWSPAGSLLASGSGDS-------TARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL 288 (563)
Q Consensus 216 ~~V~~~~~sp~~~~latgs~D~-------~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~ 288 (563)
.+|++++|+|++++||+||.|. .|++|++......... ....... .....+...|.+++++ +..
T Consensus 15 ~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~-----~~~~~~~--~~l~~~~~~v~s~~~~--~~~ 85 (365)
T 4h5i_A 15 YPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKE-----QFHILSE--FALEDNDDSPTAIDAS--KGI 85 (365)
T ss_dssp SCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHH-----HEEEEEE--EECCTTSCCCCEEEEE--TTE
T ss_pred CCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceee-----eeeeeeE--EEccCCCCceEEEEeC--CCE
Confidence 4799999999999999998754 4999998754321100 0001111 1112344567777765 456
Q ss_pred EEEE-----------eCCCeEEEEEcCCc--eeE---e-----eccCCCCEEEEEeCCCCCEEEE--eeCCCcEEEEECC
Q 008496 289 LATG-----------SYDGQARIWSTNGD--LKC---T-----LSKHKGPIFSLKWNKKGDYLLT--GSCDKTAIVWDVK 345 (563)
Q Consensus 289 l~sg-----------~~dg~i~vw~~~~~--~~~---~-----~~~h~~~V~~l~~~~~~~~l~s--~s~D~~v~iwd~~ 345 (563)
+++| +.|+.+|+|+.... ... . ...+...+.+++|+|+|+++++ ++.|++|+|||+.
T Consensus 86 ~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~ 165 (365)
T 4h5i_A 86 ILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPS 165 (365)
T ss_dssp EEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETT
T ss_pred EEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECC
Confidence 6665 45678999986432 111 1 1234456899999999999764 4578999999999
Q ss_pred CCceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcce--eeecCCCcceeEEEECCCCCEEEEEeCCC---
Q 008496 346 TEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPI--KTFAGHQGEVNCVKWDPTGSLLASCSDDV--- 420 (563)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~--~~~~~h~~~i~~~~~~~~~~~las~s~dg--- 420 (563)
+++.+..+. |...+.++.|.++..+++++.++.+.+|+...+..+ ....+|...|.+++|+|+++++++++.|+
T Consensus 166 ~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~ 244 (365)
T 4h5i_A 166 DLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKG 244 (365)
T ss_dssp TTEEEEEEE-CSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCC
T ss_pred CCcEEEEeC-CCCceEEEEEccCCceEEeccceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcce
Confidence 999888775 667799999987766655555667777777666544 34567888999999999999999999887
Q ss_pred -cEEEEeCCCCce----eeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEe-cCCCCCE
Q 008496 421 -TAKIWNMKQDKY----VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSL-NGHREPV 494 (563)
Q Consensus 421 -~i~iwd~~~~~~----~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~h~~~i 494 (563)
.+++|++..... ...+..|...|++++|+|++. +||+|+.|++|+|||+++++++..+ .+|..+|
T Consensus 245 ~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~---------~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V 315 (365)
T 4h5i_A 245 IVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGE---------LAVLASNDNSIALVKLKDLSMSKIFKQAHSFAI 315 (365)
T ss_dssp EEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSC---------EEEEEETTSCEEEEETTTTEEEEEETTSSSSCE
T ss_pred eEEeecccccceecceeeeeecCCCCCeEeEEECCCCC---------ceEEEcCCCEEEEEECCCCcEEEEecCcccCCE
Confidence 688898876543 345678999999999999986 8999999999999999999999875 7899999
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 008496 495 YSLAFSPTGEYLASGSLDKSMHIWSLKEG 523 (563)
Q Consensus 495 ~~l~~spdg~~lasgs~dg~v~iw~~~~~ 523 (563)
++|+|||||++|||||.|++|+||++...
T Consensus 316 ~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 316 TEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred EEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 99999999999999999999999999643
No 68
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=4.9e-37 Score=304.92 Aligned_cols=282 Identities=14% Similarity=0.121 Sum_probs=244.0
Q ss_pred EecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCC-E
Q 008496 210 ILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT-L 288 (563)
Q Consensus 210 ~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~-~ 288 (563)
+..+|.+.|++++|+|++.+|++|+.|+.|++|++..+... ....... .+...|++++|+|+++ +
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~----------~~~~~~~----~~~~~v~~~~~~~~~~~~ 71 (342)
T 1yfq_A 6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKN----------VDLLQSL----RYKHPLLCCNFIDNTDLQ 71 (342)
T ss_dssp CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTE----------EEEEEEE----ECSSCEEEEEEEESSSEE
T ss_pred cccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCcc----------ccceeee----ecCCceEEEEECCCCCcE
Confidence 44689999999999999999999999999999998754310 0111111 3457899999999999 9
Q ss_pred EEEEeCCCeEEEEEc-CCceeEeecc--CCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCC---------CceeEEeeec
Q 008496 289 LATGSYDGQARIWST-NGDLKCTLSK--HKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT---------EEWKQQFEFH 356 (563)
Q Consensus 289 l~sg~~dg~i~vw~~-~~~~~~~~~~--h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~---------~~~~~~~~~~ 356 (563)
|++|+.||.|++|+. .......+.+ |..+|.+++|+| +.+|++++.|+.|++||+++ ++....+. +
T Consensus 72 l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~ 149 (342)
T 1yfq_A 72 IYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-V 149 (342)
T ss_dssp EEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-S
T ss_pred EEEEcCCCeEEEEEeccCCceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-e
Confidence 999999999999999 8777788888 999999999999 99999999999999999987 66565555 7
Q ss_pred ccCeEEEecCCCceEEEEeCCCeEEEEEcCC-Cc--ceeeecCCCcceeEEEECC-CCCEEEEEeCCCcEEEEeCCCC--
Q 008496 357 SGPTLDVDWRNNVSFATSSTDNMIYVCKIGE-NR--PIKTFAGHQGEVNCVKWDP-TGSLLASCSDDVTAKIWNMKQD-- 430 (563)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~-~~--~~~~~~~h~~~i~~~~~~~-~~~~las~s~dg~i~iwd~~~~-- 430 (563)
...+.++.|.++. +++++.++.|++|++.. .. .......|...|.+++|+| ++++|++++.||.|++|+++..
T Consensus 150 ~~~v~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~ 228 (342)
T 1yfq_A 150 KNKIFTMDTNSSR-LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGD 228 (342)
T ss_dssp CCCEEEEEECSSE-EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCC
T ss_pred CCceEEEEecCCc-EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCc
Confidence 7788999998777 99999999999999987 43 3345567888999999999 9999999999999999999876
Q ss_pred ----ceeeeecccCC---------CEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCC-CCCEEE
Q 008496 431 ----KYVHDLREHSK---------EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH-REPVYS 496 (563)
Q Consensus 431 ----~~~~~~~~~~~---------~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h-~~~i~~ 496 (563)
.....+..|.. .|.+++|+|++. +|++++.||.|++||+.+++++..+.+| ..+|++
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~---------~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~ 299 (342)
T 1yfq_A 229 DYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHK---------FLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVK 299 (342)
T ss_dssp STTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTC---------CEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEE
T ss_pred ccccccceeeecccccccccccceeEEEEEEcCCCC---------EEEEecCCceEEEEcCccHhHhhhhhcccCCCceE
Confidence 67777877765 999999999875 6899999999999999999999999998 999999
Q ss_pred EEEcCCCCEEEEEeCCCc-EEEEe
Q 008496 497 LAFSPTGEYLASGSLDKS-MHIWS 519 (563)
Q Consensus 497 l~~spdg~~lasgs~dg~-v~iw~ 519 (563)
++ |+|++|++|+.||. .+.|.
T Consensus 300 ~~--~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 300 IA--CSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp EE--ECSSEEEEEEECTHHHHCSS
T ss_pred ec--CCCCeEEEEecCCccccccc
Confidence 99 99999999999998 55555
No 69
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.1e-36 Score=338.37 Aligned_cols=324 Identities=20% Similarity=0.283 Sum_probs=271.7
Q ss_pred ceeEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCC
Q 008496 207 DVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG 286 (563)
Q Consensus 207 ~~~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g 286 (563)
.+..+.+|...|.+++|+|++++|++|+.||.|++|++.++.. .... ..+...|++++|+|++
T Consensus 47 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~-------------~~~~----~~~~~~v~~~~~s~~~ 109 (814)
T 3mkq_A 47 EVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEK-------------VVDF----EAHPDYIRSIAVHPTK 109 (814)
T ss_dssp EEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCE-------------EEEE----ECCSSCEEEEEECSSS
T ss_pred eEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE-------------EEEE----ecCCCCEEEEEEeCCC
Confidence 3567789999999999999999999999999999999876532 1111 2345789999999999
Q ss_pred CEEEEEeCCCeEEEEEcCC--ceeEeeccCCCCEEEEEeCC-CCCEEEEeeCCCcEEEEECCCCceeEEeeecc-cCeEE
Q 008496 287 TLLATGSYDGQARIWSTNG--DLKCTLSKHKGPIFSLKWNK-KGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHS-GPTLD 362 (563)
Q Consensus 287 ~~l~sg~~dg~i~vw~~~~--~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~-~~~~~ 362 (563)
.+|++|+.||.|++|+... .....+.+|..+|.+++|+| ++..|++++.|++|++||+.++.....+..+. ..+..
T Consensus 110 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~ 189 (814)
T 3mkq_A 110 PYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNY 189 (814)
T ss_dssp SEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCE
T ss_pred CEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEE
Confidence 9999999999999999764 45667889999999999999 88999999999999999998887777666554 67778
Q ss_pred EecC---CCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeccc
Q 008496 363 VDWR---NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREH 439 (563)
Q Consensus 363 ~~~~---~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~ 439 (563)
+.|. +...+++++.|+.|++|++....++..+.+|.+.|.+++|+|++++|++|+.||.|++||+.+++.+..+..|
T Consensus 190 ~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~ 269 (814)
T 3mkq_A 190 VDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG 269 (814)
T ss_dssp EEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCS
T ss_pred EEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecC
Confidence 8886 4567889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC----------eEEEE-----------------------
Q 008496 440 SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG----------KLLYS----------------------- 486 (563)
Q Consensus 440 ~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~----------~~~~~----------------------- 486 (563)
...+.+++|+|++.. .+++++ .|+.+.+|++..+ +.+..
T Consensus 270 ~~~v~~~~~~~~~~~-------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (814)
T 3mkq_A 270 LERSWCIATHPTGRK-------NYIASG-FDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQ 341 (814)
T ss_dssp SSSEEEEEECTTCGG-------GEEEEE-ETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCS
T ss_pred CCcEEEEEEccCCCc-------eEEEEE-eCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeeccccccccc
Confidence 999999999998741 235554 4677888887542 22221
Q ss_pred ----------ecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEecCCCEEEEEEcCCCCEEEEEECCCeE
Q 008496 487 ----------LNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTV 556 (563)
Q Consensus 487 ----------~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~g~~la~~~~~~~v 556 (563)
+..+...+.+++|+|+|++|++++ |+.+.+|++....... .+.+.+++|+|+|+.||++..++.+
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~~~~~----~~~i~~~~~spdg~~la~~~~~g~v 416 (814)
T 3mkq_A 342 DEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAWRNKA----FGKCQDFVWGPDSNSYALIDETGQI 416 (814)
T ss_dssp SSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTTEEEE----EEECSEEEECTTSSCEEEECTTCCE
T ss_pred CccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEECccccccC----CCceEEEEEeCCCCeEEEEeCCCcE
Confidence 123445678999999999999998 8999999987655433 2346789999999999999999999
Q ss_pred EEEE
Q 008496 557 CVLD 560 (563)
Q Consensus 557 ~v~~ 560 (563)
.+|+
T Consensus 417 ~l~~ 420 (814)
T 3mkq_A 417 KYYK 420 (814)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9885
No 70
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.2e-36 Score=309.64 Aligned_cols=275 Identities=19% Similarity=0.390 Sum_probs=243.2
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEEcCC-ceeEeecc-CCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEe
Q 008496 276 DVTTLDWNGEGTLLATGSYDGQARIWSTNG-DLKCTLSK-HKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF 353 (563)
Q Consensus 276 ~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~-~~~~~~~~-h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~ 353 (563)
.+.+++|++ ..+++++.||.|++|+... .....+.. |...|++++|+|++++|++|+.||.|++||+.+++....+
T Consensus 95 ~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 172 (401)
T 4aez_A 95 YLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTM 172 (401)
T ss_dssp TCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred eEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEe
Confidence 466788886 4477888999999999864 44444443 8999999999999999999999999999999999999999
Q ss_pred eecccCeEEEecCCCceEEEEeCCCeEEEEEcC-CCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCce
Q 008496 354 EFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIG-ENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY 432 (563)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~-~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~ 432 (563)
..|...+.++.| +...+++++.|+.|++|++. ....+..+.+|.+.|.+++|+|++++|++|+.|+.|++||++++..
T Consensus 173 ~~~~~~v~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 251 (401)
T 4aez_A 173 AGHQARVGCLSW-NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIP 251 (401)
T ss_dssp CCCSSCEEEEEE-ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSE
T ss_pred cCCCCceEEEEE-CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCc
Confidence 999999999999 45688999999999999998 5667888999999999999999999999999999999999999999
Q ss_pred eeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEe--CCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEE-
Q 008496 433 VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASAS--FDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASG- 509 (563)
Q Consensus 433 ~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s--~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasg- 509 (563)
+..+..|...|.+++|+|++. .++++|+ .|+.|++||+.+++++..+. +...|.+++|+|++++|+++
T Consensus 252 ~~~~~~~~~~v~~~~~~p~~~--------~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~ 322 (401)
T 4aez_A 252 KFTKTNHNAAVKAVAWCPWQS--------NLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMSTH 322 (401)
T ss_dssp EEEECCCSSCCCEEEECTTST--------TEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEE
T ss_pred cEEecCCcceEEEEEECCCCC--------CEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEe
Confidence 999999999999999999764 2677766 89999999999999988886 56789999999999999995
Q ss_pred -eCCCcEEEEecCCCeeEEEE--e-cCCCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496 510 -SLDKSMHIWSLKEGKIVKTY--T-GNGGIFEVCWNKEGDKIAACFANHTVCVLDFR 562 (563)
Q Consensus 510 -s~dg~v~iw~~~~~~~~~~~--~-~~~~i~~l~w~~~g~~la~~~~~~~v~v~~~~ 562 (563)
+.||.|+||++.+++..... . ....|.+++|+|+|++|++++.||.|.|||+.
T Consensus 323 g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~ 379 (401)
T 4aez_A 323 GFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVY 379 (401)
T ss_dssp CTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECC
T ss_pred ecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence 48999999999998766553 3 34579999999999999999999999999985
No 71
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=6.7e-37 Score=303.74 Aligned_cols=303 Identities=19% Similarity=0.302 Sum_probs=222.9
Q ss_pred eEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECC--CC
Q 008496 209 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG--EG 286 (563)
Q Consensus 209 ~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~--~g 286 (563)
.++.+|...|++++|+|++++||+|+.||.|++|++.++... ......+ ..+...|++++|+| ++
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~---------~~~~~~~----~~~~~~v~~~~~~~~~d~ 71 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSN---------WELSDSW----RAHDSSIVAIDWASPEYG 71 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCC---------EEEEEEE----ECCSSCEEEEEECCGGGC
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCc---------ceeccee----ccCCCcEEEEEEcCCCCC
Confidence 567899999999999999999999999999999998754211 0111112 23567899999999 69
Q ss_pred CEEEEEeCCCeEEEEEcCC----------ceeEeeccCCCCEEEEEeCCC--CCEEEEeeCCCcEEEEECCCCceeEEee
Q 008496 287 TLLATGSYDGQARIWSTNG----------DLKCTLSKHKGPIFSLKWNKK--GDYLLTGSCDKTAIVWDVKTEEWKQQFE 354 (563)
Q Consensus 287 ~~l~sg~~dg~i~vw~~~~----------~~~~~~~~h~~~V~~l~~~~~--~~~l~s~s~D~~v~iwd~~~~~~~~~~~ 354 (563)
.+|++|+.||.|++|+... .....+..|..+|.+++|+|+ +.+|++++.|++|++||+++++....+.
T Consensus 72 ~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~ 151 (351)
T 3f3f_A 72 RIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWT 151 (351)
T ss_dssp SEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCE
T ss_pred CEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccc
Confidence 9999999999999999865 346678899999999999999 9999999999999999998876554433
Q ss_pred -------------ecccCeEEEecCC----CceEEEEeCCCeEEEEEcCCCcc--eeeecCCCcceeEEEECCCC----C
Q 008496 355 -------------FHSGPTLDVDWRN----NVSFATSSTDNMIYVCKIGENRP--IKTFAGHQGEVNCVKWDPTG----S 411 (563)
Q Consensus 355 -------------~~~~~~~~~~~~~----~~~~~~~~~d~~i~~~~~~~~~~--~~~~~~h~~~i~~~~~~~~~----~ 411 (563)
.+...+.++.|.+ ...+++++.++.+.+|....... +..+.+|...|++++|+|++ +
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~ 231 (351)
T 3f3f_A 152 LTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQ 231 (351)
T ss_dssp EEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSE
T ss_pred ccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcce
Confidence 3445677788865 56788999999998777766654 77888999999999999998 8
Q ss_pred EEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCC
Q 008496 412 LLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHR 491 (563)
Q Consensus 412 ~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~ 491 (563)
+|++|+.||.|++||++.+........+........+.+...... .....+.....+.+|+....+.+..+.+|.
T Consensus 232 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 306 (351)
T 3f3f_A 232 LIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDA-----QGRSDSNTEEKAELQSNLQVELLSEHDDHN 306 (351)
T ss_dssp EEEEEETTSCEEEEEEEECC--------------------------------------------CCSEEEEEEEEECTTS
T ss_pred EEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCccccccc-----ccccccccceeeeecccccccEEEEEeccc
Confidence 999999999999999987654433332222222222222211000 012233445667778777788889999999
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEE
Q 008496 492 EPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTY 529 (563)
Q Consensus 492 ~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~ 529 (563)
.+|++++|+|+|++|++|+.||.|+||++.+++.+..+
T Consensus 307 ~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~ 344 (351)
T 3f3f_A 307 GEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCM 344 (351)
T ss_dssp SCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEE
T ss_pred ccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhe
Confidence 99999999999999999999999999999988655443
No 72
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.1e-38 Score=319.80 Aligned_cols=279 Identities=19% Similarity=0.359 Sum_probs=245.0
Q ss_pred CeEEEEECCCCC-EEEEE----------eCCCeEEEEEcCCce---eEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEE
Q 008496 276 DVTTLDWNGEGT-LLATG----------SYDGQARIWSTNGDL---KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIV 341 (563)
Q Consensus 276 ~V~~l~~s~~g~-~l~sg----------~~dg~i~vw~~~~~~---~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~i 341 (563)
.|.+++|+|+|+ +|++| +.||.|++|+..... ......|..+|++++|+|++.+|++|+.|+.|++
T Consensus 14 ~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~v 93 (416)
T 2pm9_A 14 RTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLEL 93 (416)
T ss_dssp ESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEEE
T ss_pred hcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeEEE
Confidence 378899999997 99999 889999999987542 2223368999999999999999999999999999
Q ss_pred EECCC----CceeEEeeecccCeEEEecCC--CceEEEEeCCCeEEEEEcCCCc------ce---eeecCCCcceeEEEE
Q 008496 342 WDVKT----EEWKQQFEFHSGPTLDVDWRN--NVSFATSSTDNMIYVCKIGENR------PI---KTFAGHQGEVNCVKW 406 (563)
Q Consensus 342 wd~~~----~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~i~~~~~~~~~------~~---~~~~~h~~~i~~~~~ 406 (563)
||+.+ ......+..|..++.++.|.+ ...+++++.|+.|++|++.... .. ..+.+|...|.+++|
T Consensus 94 w~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 173 (416)
T 2pm9_A 94 YSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAW 173 (416)
T ss_dssp ECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEE
T ss_pred eecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEe
Confidence 99987 447777888999999999975 4678999999999999998765 22 234679999999999
Q ss_pred CCC-CCEEEEEeCCCcEEEEeCCCCceeeeeccc------CCCEEEEEEccCCCCCCCCCCcEEEEEEeCCC---eEEEE
Q 008496 407 DPT-GSLLASCSDDVTAKIWNMKQDKYVHDLREH------SKEIYTIRWSPTGSGTNNPNQQLILASASFDS---TVKLW 476 (563)
Q Consensus 407 ~~~-~~~las~s~dg~i~iwd~~~~~~~~~~~~~------~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg---~i~iw 476 (563)
+|+ +.+|++++.|+.|++||+++++.+..+..| ...|.+++|+|++. .++++++.|+ .|++|
T Consensus 174 ~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--------~~l~~~~~d~~~~~i~~~ 245 (416)
T 2pm9_A 174 NQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNS--------TRVATATGSDNDPSILIW 245 (416)
T ss_dssp CSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCT--------TEEEEEECCSSSCCCCEE
T ss_pred CCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCC--------CEEEEEECCCCCceEEEE
Confidence 999 789999999999999999999988888776 78899999999863 2789999999 99999
Q ss_pred eCCCC-eEEEEec-CCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEecCCCeeEEEEec-CCCEEEEEEcCCC-CEEEEEE
Q 008496 477 DVELG-KLLYSLN-GHREPVYSLAFSP-TGEYLASGSLDKSMHIWSLKEGKIVKTYTG-NGGIFEVCWNKEG-DKIAACF 551 (563)
Q Consensus 477 d~~~~-~~~~~~~-~h~~~i~~l~~sp-dg~~lasgs~dg~v~iw~~~~~~~~~~~~~-~~~i~~l~w~~~g-~~la~~~ 551 (563)
|++++ ..+..+. +|..+|++++|+| ++.+|++|+.||.|++||+.+++.+..+.. ...|.+++|+|+| ..|++++
T Consensus 246 d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~ 325 (416)
T 2pm9_A 246 DLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACAS 325 (416)
T ss_dssp ETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECC
T ss_pred eCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEe
Confidence 99986 5667777 8999999999999 999999999999999999999999998876 4568999999999 8999999
Q ss_pred CCCeEEEEEee
Q 008496 552 ANHTVCVLDFR 562 (563)
Q Consensus 552 ~~~~v~v~~~~ 562 (563)
.|+.|.|||++
T Consensus 326 ~d~~i~iw~~~ 336 (416)
T 2pm9_A 326 FDNKIEVQTLQ 336 (416)
T ss_dssp SSSEEEEEESC
T ss_pred cCCcEEEEEcc
Confidence 99999999985
No 73
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.8e-37 Score=316.94 Aligned_cols=289 Identities=18% Similarity=0.229 Sum_probs=236.4
Q ss_pred CceeEe-cCCCCceEEEEECC-CCCEEEEeeCCCcEEEEecCC---CCCcCCCCCCCceEEEEEeeecccccCCCCeEEE
Q 008496 206 SDVTIL-EGHTSEVCACAWSP-AGSLLASGSGDSTARIWTIAD---GTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTL 280 (563)
Q Consensus 206 ~~~~~l-~~h~~~V~~~~~sp-~~~~latgs~D~~i~iW~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l 280 (563)
..+..+ .+|.+.|++++|+| ++.+||+|+.|++|+||++.+ +.... . .... .+...|+++
T Consensus 53 ~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~-----~--~~~~--------~h~~~v~~~ 117 (437)
T 3gre_A 53 KLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYS-----S--SLTY--------DCSSTVTQI 117 (437)
T ss_dssp CEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCS-----C--SEEE--------ECSSCEEEE
T ss_pred eEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccc-----e--eeec--------cCCCCEEEE
Confidence 345566 89999999999999 999999999999999999865 21100 0 0111 245789999
Q ss_pred EECCCCCEEEEEeCCCeEEEEEc----CCceeEeecc------------CCCCEEEEE--eCCCCCEEEEeeCCCcEEEE
Q 008496 281 DWNGEGTLLATGSYDGQARIWST----NGDLKCTLSK------------HKGPIFSLK--WNKKGDYLLTGSCDKTAIVW 342 (563)
Q Consensus 281 ~~s~~g~~l~sg~~dg~i~vw~~----~~~~~~~~~~------------h~~~V~~l~--~~~~~~~l~s~s~D~~v~iw 342 (563)
+|+|++.+|++|+.||.|++|+. .+.....+.. +...+.++. +++++.+|++|+.|++|++|
T Consensus 118 ~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw 197 (437)
T 3gre_A 118 TMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIF 197 (437)
T ss_dssp EECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEE
T ss_pred EEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence 99999999999999999999997 3433332221 456677776 66889999999999999999
Q ss_pred ECCCCceeEEeee--cccCeEEEecCCC-ceEEEEeCCCeEEEEEcCCCcceeeec-CCCcceeEEEECC----CCCEEE
Q 008496 343 DVKTEEWKQQFEF--HSGPTLDVDWRNN-VSFATSSTDNMIYVCKIGENRPIKTFA-GHQGEVNCVKWDP----TGSLLA 414 (563)
Q Consensus 343 d~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~~-~h~~~i~~~~~~~----~~~~la 414 (563)
|+++++....+.. |...+.++.|.++ ..+++++.|+.|++|++....++..+. +|...|.+++|+| ++.+|+
T Consensus 198 d~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~ 277 (437)
T 3gre_A 198 DIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVV 277 (437)
T ss_dssp ETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEE
T ss_pred eCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEE
Confidence 9999999998887 7889999999754 567889999999999999999888886 7888999996664 678999
Q ss_pred EEeCCCcEEEEeCCCCceeeeecccC--------------------------CCEEEEEEccCCCCCCCCCCcEEEEEEe
Q 008496 415 SCSDDVTAKIWNMKQDKYVHDLREHS--------------------------KEIYTIRWSPTGSGTNNPNQQLILASAS 468 (563)
Q Consensus 415 s~s~dg~i~iwd~~~~~~~~~~~~~~--------------------------~~i~~~~~~p~~~~~~~~~~~~~l~s~s 468 (563)
+|+.||.|++||+++++++..+..|. ..|++++|+ ++ .+|++|+
T Consensus 278 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~---------~~l~s~~ 347 (437)
T 3gre_A 278 GGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-ND---------KILLTDE 347 (437)
T ss_dssp EESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TT---------EEEEEEG
T ss_pred EEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-Cc---------eEEEecC
Confidence 99999999999999998877776554 345555655 22 3799999
Q ss_pred CCCeEEEEeCCCCeEEEEecC-------------------------------------CCCCEEEEEEcCC--CCEEEEE
Q 008496 469 FDSTVKLWDVELGKLLYSLNG-------------------------------------HREPVYSLAFSPT--GEYLASG 509 (563)
Q Consensus 469 ~dg~i~iwd~~~~~~~~~~~~-------------------------------------h~~~i~~l~~spd--g~~lasg 509 (563)
.||.|++||+.+++++..+.+ |...|++++|+++ +.+|++|
T Consensus 348 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~ 427 (437)
T 3gre_A 348 ATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVAC 427 (437)
T ss_dssp GGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEE
T ss_pred CCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEE
Confidence 999999999998876666554 8899999999998 7899999
Q ss_pred eCCCcEEEEe
Q 008496 510 SLDKSMHIWS 519 (563)
Q Consensus 510 s~dg~v~iw~ 519 (563)
+.||.|+||+
T Consensus 428 ~~dG~I~iw~ 437 (437)
T 3gre_A 428 DNSGLIGIFQ 437 (437)
T ss_dssp ETTSCEEEEC
T ss_pred cCCceEEEeC
Confidence 9999999995
No 74
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1.2e-35 Score=304.04 Aligned_cols=275 Identities=24% Similarity=0.479 Sum_probs=239.6
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEEcC-CceeEe--eccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEE
Q 008496 276 DVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCT--LSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQ 352 (563)
Q Consensus 276 ~V~~l~~s~~g~~l~sg~~dg~i~vw~~~-~~~~~~--~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~ 352 (563)
.+..|+||++ ++|++|. |++|+|||.. |..... +.+|...|++|+|+|+|++|++|+.|++|++||+.+++.+..
T Consensus 107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~ 184 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN 184 (420)
T ss_dssp TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEE
Confidence 4678999986 5777765 9999999976 444443 457888999999999999999999999999999999999999
Q ss_pred eeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCC-cceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCc
Q 008496 353 FEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGEN-RPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK 431 (563)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~-~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~ 431 (563)
+..|...+.++.|. ...+++++.|+.+++|+.... ..+..+.+|...+.++.|+|+++++++++.|+.+++|+..++.
T Consensus 185 ~~~h~~~v~~~s~~-~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~ 263 (420)
T 4gga_A 185 MTSHSARVGSLSWN-SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGE 263 (420)
T ss_dssp ECCCSSCEEEEEEE-TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCS
T ss_pred EeCCCCceEEEeeC-CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeecccc
Confidence 99999999998885 457889999999999998764 4567889999999999999999999999999999999998764
Q ss_pred ----eeeeecccCCCEEEEEEccCCCCCCCCCCcEEEE--EEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCE
Q 008496 432 ----YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILA--SASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEY 505 (563)
Q Consensus 432 ----~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~--s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~ 505 (563)
.+.....|...|.+++|+|.+.. +++ +|+.|++|++||+.+++++..+..| ..+.++.|+|+++.
T Consensus 264 ~~~~~~~~~~~~~~~V~~~~~~p~~~~--------~la~~~gs~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~~~~~~~~ 334 (420)
T 4gga_A 264 GGWVPLQTFTQHQGAVKAVAWCPWQSN--------VLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKE 334 (420)
T ss_dssp SCSCCSEEECCCSSCEEEEEECTTCTT--------EEEEEECTTTCEEEEEETTTTEEEEEEECS-SCEEEEEEETTTTE
T ss_pred ccceeeeeecccCCceeeeeeCCCccc--------EEEEEeecCCCEEEEEeCCccccceeeccc-cceeeeeecCCCCe
Confidence 34566789999999999997642 444 4568999999999999999888865 57899999999999
Q ss_pred EEEEe--CCCcEEEEecCCCeeEEEEecC-CCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496 506 LASGS--LDKSMHIWSLKEGKIVKTYTGN-GGIFEVCWNKEGDKIAACFANHTVCVLDFR 562 (563)
Q Consensus 506 lasgs--~dg~v~iw~~~~~~~~~~~~~~-~~i~~l~w~~~g~~la~~~~~~~v~v~~~~ 562 (563)
|++++ .|+.|+|||+.+++++.++.++ +.|++++|+|||++||+|+.|++|+|||+.
T Consensus 335 lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~ 394 (420)
T 4gga_A 335 LISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCF 394 (420)
T ss_dssp EEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCS
T ss_pred EEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECC
Confidence 98765 7899999999999999999874 579999999999999999999999999974
No 75
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.7e-36 Score=302.57 Aligned_cols=280 Identities=14% Similarity=0.241 Sum_probs=235.4
Q ss_pred CCCCeEEEEECCCCCEE-EEEeC---CCeEEEEEcCCce-e-EeeccCCCCEEEEEeCCC---CCEEEEeeCCCcEEEEE
Q 008496 273 KSKDVTTLDWNGEGTLL-ATGSY---DGQARIWSTNGDL-K-CTLSKHKGPIFSLKWNKK---GDYLLTGSCDKTAIVWD 343 (563)
Q Consensus 273 ~~~~V~~l~~s~~g~~l-~sg~~---dg~i~vw~~~~~~-~-~~~~~h~~~V~~l~~~~~---~~~l~s~s~D~~v~iwd 343 (563)
|...|++++|+|++..+ ++|+. ||.|++|+..... . ....+|..+|.+++|+|+ +.+|++|+.|+.|++||
T Consensus 17 h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd 96 (357)
T 3i2n_A 17 FNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWN 96 (357)
T ss_dssp CSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEEC
T ss_pred CCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEe
Confidence 56789999999999655 56665 9999999987543 2 233479999999999998 69999999999999999
Q ss_pred CCCCc-eeEEeeecccCeEEEecC-------CCceEEEEeCCCeEEEEEcCCCc-ceeeecCCCc----ceeEEE----E
Q 008496 344 VKTEE-WKQQFEFHSGPTLDVDWR-------NNVSFATSSTDNMIYVCKIGENR-PIKTFAGHQG----EVNCVK----W 406 (563)
Q Consensus 344 ~~~~~-~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~d~~i~~~~~~~~~-~~~~~~~h~~----~i~~~~----~ 406 (563)
+.++. ....+..|...+.++.|. +...+++++.|+.|++|++.... ++..+..|.+ .+.+++ |
T Consensus 97 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 176 (357)
T 3i2n_A 97 LEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAY 176 (357)
T ss_dssp TTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCC
T ss_pred CCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEecc
Confidence 99887 788888899999998663 34578999999999999998876 7788876655 788888 7
Q ss_pred CCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEcc---CCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeE
Q 008496 407 DPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSP---TGSGTNNPNQQLILASASFDSTVKLWDVELGKL 483 (563)
Q Consensus 407 ~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p---~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~ 483 (563)
+|++++|++++.|+.|++||+++++... ...|...|.+++|+| ++. +|++++.||.|++||+++++.
T Consensus 177 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~---------~l~~~~~dg~i~i~d~~~~~~ 246 (357)
T 3i2n_A 177 NQEERVVCAGYDNGDIKLFDLRNMALRW-ETNIKNGVCSLEFDRKDISMN---------KLVATSLEGKFHVFDMRTQHP 246 (357)
T ss_dssp C-CCCEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEESCSSSSCC---------EEEEEESTTEEEEEEEEEEET
T ss_pred CCCCCEEEEEccCCeEEEEECccCceee-ecCCCCceEEEEcCCCCCCCC---------EEEEECCCCeEEEEeCcCCCc
Confidence 8999999999999999999999988754 466889999999999 553 789999999999999987654
Q ss_pred EEE-----ecCCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEecCCC-------------------eeEEEEec-CCCEEE
Q 008496 484 LYS-----LNGHREPVYSLAFSPTGE-YLASGSLDKSMHIWSLKEG-------------------KIVKTYTG-NGGIFE 537 (563)
Q Consensus 484 ~~~-----~~~h~~~i~~l~~spdg~-~lasgs~dg~v~iw~~~~~-------------------~~~~~~~~-~~~i~~ 537 (563)
+.. +.+|..+|++++|+|+++ +|++|+.||.|++||+.++ +.+..+.. ...|.+
T Consensus 247 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~ 326 (357)
T 3i2n_A 247 TKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISS 326 (357)
T ss_dssp TTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEE
T ss_pred ccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeE
Confidence 333 348999999999999998 8999999999999999754 34555554 457999
Q ss_pred EEEcCCCCEEE-EEECCCeEEEEEee
Q 008496 538 VCWNKEGDKIA-ACFANHTVCVLDFR 562 (563)
Q Consensus 538 l~w~~~g~~la-~~~~~~~v~v~~~~ 562 (563)
++|+|+|+.|+ +|+.|+.|.|||+.
T Consensus 327 ~~~s~~~~~l~~s~~~d~~i~iw~~~ 352 (357)
T 3i2n_A 327 LDWSPDKRGLCVCSSFDQTVRVLIVT 352 (357)
T ss_dssp EEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred EEEcCCCCeEEEEecCCCcEEEEECC
Confidence 99999999998 78999999999986
No 76
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=3e-36 Score=301.88 Aligned_cols=292 Identities=18% Similarity=0.306 Sum_probs=238.4
Q ss_pred CCCceeEecCCCCceEEEEECCC---CCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEE
Q 008496 204 PNSDVTILEGHTSEVCACAWSPA---GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTL 280 (563)
Q Consensus 204 ~~~~~~~l~~h~~~V~~~~~sp~---~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l 280 (563)
|...+.++.+|...|++++|+|+ |++|++|+.||.|+||++.+... ...... ..+...|+++
T Consensus 28 ~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~-----------~~~~~~----~~h~~~v~~~ 92 (368)
T 3mmy_A 28 PMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ-----------TIPKAQ----QMHTGPVLDV 92 (368)
T ss_dssp TTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSC-----------EEEEEE----EECSSCEEEE
T ss_pred CcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCc-----------eeEEEe----ccccCCEEEE
Confidence 44556788999999999999999 69999999999999999875211 011111 1346789999
Q ss_pred EECCCCCEEEEEeCCCeEEEEEcCCceeEeeccCCCCEEEEEe--CCCCCEEEEeeCCCcEEEEECCCCceeEEeeeccc
Q 008496 281 DWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKW--NKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSG 358 (563)
Q Consensus 281 ~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~--~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~ 358 (563)
+|+|++++|++|+.||.|++|+........+..|..+|.+++| +|++.+|++++.|++|++||+++++....+..+.
T Consensus 93 ~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~- 171 (368)
T 3mmy_A 93 CWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE- 171 (368)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-
T ss_pred EECcCCCEEEEEcCCCcEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-
Confidence 9999999999999999999999987766677889999999999 9999999999999999999999998888777654
Q ss_pred CeEEEecCCCceEEEEeCCCeEEEEEcCCCcceee-e-cCCCcceeEEEECCCCCE----EEEEeCCCcEEEEeCCCC--
Q 008496 359 PTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKT-F-AGHQGEVNCVKWDPTGSL----LASCSDDVTAKIWNMKQD-- 430 (563)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~-~-~~h~~~i~~~~~~~~~~~----las~s~dg~i~iwd~~~~-- 430 (563)
.+..+.+... .+++++.++.+.+|++........ + ..+...+.++++.++... +++|+.||.|++|+++..
T Consensus 172 ~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~ 250 (368)
T 3mmy_A 172 RCYCADVIYP-MAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNP 250 (368)
T ss_dssp CEEEEEEETT-EEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCH
T ss_pred CceEEEecCC-eeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCc
Confidence 4556666544 566777889999999976543222 2 123345566666555544 999999999999999887
Q ss_pred -ceeeeecccCC------------CEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEE
Q 008496 431 -KYVHDLREHSK------------EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSL 497 (563)
Q Consensus 431 -~~~~~~~~~~~------------~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l 497 (563)
..+..+..|.. .|.+++|+|++. +|++|+.||.|++||+.+++++..+.+|..+|+++
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~---------~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 321 (368)
T 3mmy_A 251 AKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHG---------TLATVGSDGRFSFWDKDARTKLKTSEQLDQPISAC 321 (368)
T ss_dssp HHHSEEEECSEEC----CCCEEECCEEEEEECTTTC---------CEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEE
T ss_pred cccceeeeeeecccccccccccccceEEEEEecCCC---------EEEEEccCCeEEEEECCCCcEEEEecCCCCCceEE
Confidence 45666777765 799999999875 68999999999999999999999999999999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEecC
Q 008496 498 AFSPTGEYLASGSLDKSMHIWSLK 521 (563)
Q Consensus 498 ~~spdg~~lasgs~dg~v~iw~~~ 521 (563)
+|+|+|++||+|+.|+..+.|++.
T Consensus 322 ~~s~~g~~l~~~s~d~~~~~~~~~ 345 (368)
T 3mmy_A 322 CFNHNGNIFAYASSYDWSKGHEFY 345 (368)
T ss_dssp EECTTSSCEEEEECCCSTTCGGGC
T ss_pred EECCCCCeEEEEeccccccccccc
Confidence 999999999999999865555543
No 77
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.2e-36 Score=304.34 Aligned_cols=292 Identities=22% Similarity=0.403 Sum_probs=240.0
Q ss_pred eeEecCCCCce--EEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCC
Q 008496 208 VTILEGHTSEV--CACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE 285 (563)
Q Consensus 208 ~~~l~~h~~~V--~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~ 285 (563)
+....+|...+ .+++|++ ..+++++.|+.|++|++.++... .... ..+...|++++|+|+
T Consensus 84 ~~~~~~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~-------------~~~~---~~~~~~v~~v~~s~~ 145 (401)
T 4aez_A 84 VLDAPGIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVS-------------ALAE---TDESTYVASVKWSHD 145 (401)
T ss_dssp EEECTTCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEE-------------EEEE---CCTTCCEEEEEECTT
T ss_pred eeeCCCCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEe-------------Eeee---cCCCCCEEEEEECCC
Confidence 33445777664 4566664 56788899999999999765421 1111 124678999999999
Q ss_pred CCEEEEEeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECC-CCceeEEeeecccCeEEE
Q 008496 286 GTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVK-TEEWKQQFEFHSGPTLDV 363 (563)
Q Consensus 286 g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~-~~~~~~~~~~~~~~~~~~ 363 (563)
|.+|++|+.||.|++|+.. +.....+.+|...|.+++| ++++|++|+.|+.|++||++ .......+..|...+.++
T Consensus 146 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~ 223 (401)
T 4aez_A 146 GSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGL 223 (401)
T ss_dssp SSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEE
T ss_pred CCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEE
Confidence 9999999999999999976 5667788899999999999 46799999999999999998 566677888899999999
Q ss_pred ecCCC-ceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCC-CEEEEEe--CCCcEEEEeCCCCceeeeeccc
Q 008496 364 DWRNN-VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTG-SLLASCS--DDVTAKIWNMKQDKYVHDLREH 439 (563)
Q Consensus 364 ~~~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~-~~las~s--~dg~i~iwd~~~~~~~~~~~~~ 439 (563)
.|..+ ..+++++.|+.|++|++....++..+.+|...|.+++|+|++ .++++|+ .|+.|++||+.+++.+..+. +
T Consensus 224 ~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~ 302 (401)
T 4aez_A 224 AWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-A 302 (401)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-C
T ss_pred EEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-C
Confidence 99754 578899999999999999999999999999999999999976 5666665 79999999999999888775 6
Q ss_pred CCCEEEEEEccCCCCCCCCCCcEEEEE--EeCCCeEEEEeCCCCeEE--EEecCCCCCEEEEEEcCCCCEEEEEeCCCcE
Q 008496 440 SKEIYTIRWSPTGSGTNNPNQQLILAS--ASFDSTVKLWDVELGKLL--YSLNGHREPVYSLAFSPTGEYLASGSLDKSM 515 (563)
Q Consensus 440 ~~~i~~~~~~p~~~~~~~~~~~~~l~s--~s~dg~i~iwd~~~~~~~--~~~~~h~~~i~~l~~spdg~~lasgs~dg~v 515 (563)
...|.+++|+|++. ++++ |+.||.|++||+.+++.. ..+.+|..+|.+++|+|+|++|++|+.||.|
T Consensus 303 ~~~v~~~~~s~~~~---------~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i 373 (401)
T 4aez_A 303 GSQVTSLIWSPHSK---------EIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENL 373 (401)
T ss_dssp SSCEEEEEECSSSS---------EEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEE
T ss_pred CCcEEEEEECCCCC---------eEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcE
Confidence 67899999999875 5555 458999999999986654 4577899999999999999999999999999
Q ss_pred EEEecCCCeeEEEE
Q 008496 516 HIWSLKEGKIVKTY 529 (563)
Q Consensus 516 ~iw~~~~~~~~~~~ 529 (563)
++|++.+++.+...
T Consensus 374 ~iw~~~~~~~~~~~ 387 (401)
T 4aez_A 374 KFWRVYDGDHVKRP 387 (401)
T ss_dssp EEEECCC-------
T ss_pred EEEECCCCcccccc
Confidence 99999998876553
No 78
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-36 Score=308.15 Aligned_cols=277 Identities=21% Similarity=0.363 Sum_probs=245.8
Q ss_pred CCCeEEEEECCCCC-EEEEEeCCCeEEEEEc----CCce-------eEeecc----------CCCCEEEEEeCCCCCEEE
Q 008496 274 SKDVTTLDWNGEGT-LLATGSYDGQARIWST----NGDL-------KCTLSK----------HKGPIFSLKWNKKGDYLL 331 (563)
Q Consensus 274 ~~~V~~l~~s~~g~-~l~sg~~dg~i~vw~~----~~~~-------~~~~~~----------h~~~V~~l~~~~~~~~l~ 331 (563)
...|++++|+|+|+ +|++|+.||.|++|+. .... ...+.. |.++|++++|+|++++|+
T Consensus 45 ~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 124 (425)
T 1r5m_A 45 LDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIV 124 (425)
T ss_dssp CSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEE
T ss_pred cCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEE
Confidence 46799999999999 9999999999999998 5332 333333 688999999999999999
Q ss_pred EeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCC-ceEEEEeCCCeEEEEEcCCCcceeeecCCCcc----------
Q 008496 332 TGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNN-VSFATSSTDNMIYVCKIGENRPIKTFAGHQGE---------- 400 (563)
Q Consensus 332 s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~---------- 400 (563)
+|+.|+.|++|| .++.....+..|..++.++.|.++ ..+++++.|+.|++|++...+.+..+..+...
T Consensus 125 ~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (425)
T 1r5m_A 125 TGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHS 203 (425)
T ss_dssp EEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC-------------
T ss_pred EEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeecccc
Confidence 999999999999 677788888889999999999754 56888999999999999999988888888776
Q ss_pred -----eeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEE
Q 008496 401 -----VNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKL 475 (563)
Q Consensus 401 -----i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~i 475 (563)
+.+++|+|++ .+++++.|+.|++||+.++..+..+..|...|.+++|+|++. +|++++.||.|++
T Consensus 204 ~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~---------~l~~~~~d~~i~i 273 (425)
T 1r5m_A 204 GDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNK---------LLLSASDDGTLRI 273 (425)
T ss_dssp --CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTT---------EEEEEETTSCEEE
T ss_pred CCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCC---------EEEEEcCCCEEEE
Confidence 9999999875 578899999999999999998888999999999999999875 7899999999999
Q ss_pred EeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEec-CCCEEEEEEcCCCCEEEEEECCC
Q 008496 476 WDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG-NGGIFEVCWNKEGDKIAACFANH 554 (563)
Q Consensus 476 wd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~-~~~i~~l~w~~~g~~la~~~~~~ 554 (563)
||+++++.+..+.+|..+|.+++|+|++ +|++++.|+.|++||+.+++.+..+.. ...|..++|+|+|+.||+++.|+
T Consensus 274 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg 352 (425)
T 1r5m_A 274 WHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDG 352 (425)
T ss_dssp ECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTS
T ss_pred EECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCC
Confidence 9999999989999999999999999999 999999999999999999999888876 56799999999999999999999
Q ss_pred eEEEEEee
Q 008496 555 TVCVLDFR 562 (563)
Q Consensus 555 ~v~v~~~~ 562 (563)
.|.|||++
T Consensus 353 ~i~i~~~~ 360 (425)
T 1r5m_A 353 QVNVYDLK 360 (425)
T ss_dssp CEEEEECH
T ss_pred eEEEEECC
Confidence 99999985
No 79
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=5.6e-36 Score=303.71 Aligned_cols=249 Identities=26% Similarity=0.424 Sum_probs=207.3
Q ss_pred CCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEe
Q 008496 214 HTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS 293 (563)
Q Consensus 214 h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~ 293 (563)
+...|.+++|+|++++||+|+.|++|+|||+.++.. ...+ ..|...|++++|+|++.+|++|+
T Consensus 122 ~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~-------------~~~~----~~h~~~v~~~~~~p~~~~l~s~s 184 (393)
T 1erj_A 122 SDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKI-------------VMIL----QGHEQDIYSLDYFPSGDKLVSGS 184 (393)
T ss_dssp CCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEE-------------EEEE----CCCSSCEEEEEECTTSSEEEEEE
T ss_pred CceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcE-------------EEEE----ccCCCCEEEEEEcCCCCEEEEec
Confidence 344599999999999999999999999999875431 1112 23567899999999999999999
Q ss_pred CCCeEEEEEcCCceeEeeccCCCCEEEEEeCC-CCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCCceEE
Q 008496 294 YDGQARIWSTNGDLKCTLSKHKGPIFSLKWNK-KGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFA 372 (563)
Q Consensus 294 ~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (563)
.|+.|++||...........+...|.+++|+| ++.+|++|+.|++|++||++++.....+..
T Consensus 185 ~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~----------------- 247 (393)
T 1erj_A 185 GDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDS----------------- 247 (393)
T ss_dssp TTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------------------
T ss_pred CCCcEEEEECCCCeeEEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecc-----------------
Confidence 99999999986543333334677899999999 899999999999999999988765543321
Q ss_pred EEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCC------------ceeeeecccC
Q 008496 373 TSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD------------KYVHDLREHS 440 (563)
Q Consensus 373 ~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~------------~~~~~~~~~~ 440 (563)
......+|...|.+++|+|++++|++|+.|++|++||+.+. .+...+.+|.
T Consensus 248 -----------------~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~ 310 (393)
T 1erj_A 248 -----------------ENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHK 310 (393)
T ss_dssp ----------------------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCS
T ss_pred -----------------cccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEeccc
Confidence 01123578999999999999999999999999999998753 3455677899
Q ss_pred CCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcC------CCCEEEEEeCCCc
Q 008496 441 KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSP------TGEYLASGSLDKS 514 (563)
Q Consensus 441 ~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp------dg~~lasgs~dg~ 514 (563)
..|.+++|+|++. +|++|+.|+.|++||+.+++++..+.+|...|.+++|+| ++.+||+|+.||+
T Consensus 311 ~~v~~~~~~~~~~---------~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~ 381 (393)
T 1erj_A 311 DFVLSVATTQNDE---------YILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCK 381 (393)
T ss_dssp SCEEEEEECGGGC---------EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSE
T ss_pred CcEEEEEECCCCC---------EEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCc
Confidence 9999999999875 799999999999999999999999999999999999986 6889999999999
Q ss_pred EEEEecCC
Q 008496 515 MHIWSLKE 522 (563)
Q Consensus 515 v~iw~~~~ 522 (563)
|+||++.+
T Consensus 382 i~iW~~~~ 389 (393)
T 1erj_A 382 ARIWKYKK 389 (393)
T ss_dssp EEEEEEEE
T ss_pred EEECcccc
Confidence 99999864
No 80
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=5.4e-37 Score=301.60 Aligned_cols=252 Identities=25% Similarity=0.420 Sum_probs=205.6
Q ss_pred cCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCc---eeEeeccCCCCEEEEEeCC--CCCEEEEeeCCCcEEEEECCC
Q 008496 272 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD---LKCTLSKHKGPIFSLKWNK--KGDYLLTGSCDKTAIVWDVKT 346 (563)
Q Consensus 272 ~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~---~~~~~~~h~~~V~~l~~~~--~~~~l~s~s~D~~v~iwd~~~ 346 (563)
.|...|++++|+|+|++|++|+.|+.|+||+.... ....+.+|.++|++++|++ ++++|++|+.|++|++||+++
T Consensus 11 ~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~ 90 (316)
T 3bg1_A 11 SHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREEN 90 (316)
T ss_dssp ---CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSS
T ss_pred cccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCC
Confidence 45678999999999999999999999999997542 3567889999999999986 489999999999999999876
Q ss_pred CceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCC--CCEEEEEeCCCcEEE
Q 008496 347 EEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT--GSLLASCSDDVTAKI 424 (563)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~--~~~las~s~dg~i~i 424 (563)
+.+. ++..+.+|...|++++|+|+ +.+|++|+.|++|++
T Consensus 91 ~~~~---------------------------------------~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~l 131 (316)
T 3bg1_A 91 GTWE---------------------------------------KSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISL 131 (316)
T ss_dssp SCCC---------------------------------------EEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEE
T ss_pred Ccce---------------------------------------EEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEE
Confidence 5321 12346689999999999998 789999999999999
Q ss_pred EeCCCCce---eeeecccCCCEEEEEEccCCCCC--------CCCCCcEEEEEEeCCCeEEEEeCCCC---eEEEEecCC
Q 008496 425 WNMKQDKY---VHDLREHSKEIYTIRWSPTGSGT--------NNPNQQLILASASFDSTVKLWDVELG---KLLYSLNGH 490 (563)
Q Consensus 425 wd~~~~~~---~~~~~~~~~~i~~~~~~p~~~~~--------~~~~~~~~l~s~s~dg~i~iwd~~~~---~~~~~~~~h 490 (563)
||++.... ...+..|...+.++.|+|+.... ..+....+|++|+.|++|+|||++.+ +++..+.+|
T Consensus 132 wd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h 211 (316)
T 3bg1_A 132 LTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAH 211 (316)
T ss_dssp EEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCC
T ss_pred EecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccC
Confidence 99987532 34567899999999999974210 00111236899999999999999755 567788999
Q ss_pred CCCEEEEEEcCCC----CEEEEEeCCCcEEEEecCCC---e-eEEEE-ecCCCEEEEEEcCCCCEEEEEECCCeEEEEEe
Q 008496 491 REPVYSLAFSPTG----EYLASGSLDKSMHIWSLKEG---K-IVKTY-TGNGGIFEVCWNKEGDKIAACFANHTVCVLDF 561 (563)
Q Consensus 491 ~~~i~~l~~spdg----~~lasgs~dg~v~iw~~~~~---~-~~~~~-~~~~~i~~l~w~~~g~~la~~~~~~~v~v~~~ 561 (563)
..+|.+++|+|++ .+||+|+.|++|+||++.+. . ....+ .....|++++|+|+|+.||+|+.|+.|.||+.
T Consensus 212 ~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~ 291 (316)
T 3bg1_A 212 SDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKE 291 (316)
T ss_dssp SSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEE
T ss_pred CCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEE
Confidence 9999999999997 89999999999999998762 1 11112 23567999999999999999999999999986
Q ss_pred e
Q 008496 562 R 562 (563)
Q Consensus 562 ~ 562 (563)
.
T Consensus 292 ~ 292 (316)
T 3bg1_A 292 S 292 (316)
T ss_dssp C
T ss_pred C
Confidence 4
No 81
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=9.8e-37 Score=313.69 Aligned_cols=279 Identities=18% Similarity=0.259 Sum_probs=225.6
Q ss_pred CCCCeEEEEECC-CCCEEEEEeCCCeEEEEEcCCc---eeEeeccCCCCEEEEEeCC-CCCEEEEeeCCCcEEEEECCCC
Q 008496 273 KSKDVTTLDWNG-EGTLLATGSYDGQARIWSTNGD---LKCTLSKHKGPIFSLKWNK-KGDYLLTGSCDKTAIVWDVKTE 347 (563)
Q Consensus 273 ~~~~V~~l~~s~-~g~~l~sg~~dg~i~vw~~~~~---~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~D~~v~iwd~~~~ 347 (563)
+...|++|+|+| ++++||+|+.||.|+|||.... ....+.+|.++|++|+|+| ++++|++|+.|++|++||++++
T Consensus 118 ~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~ 197 (435)
T 4e54_B 118 FDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGN 197 (435)
T ss_dssp CSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSC
T ss_pred CCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCC
Confidence 356799999999 5789999999999999997532 3345678999999999998 6889999999999999999876
Q ss_pred ceeEEeeecc--cCeEEEecCC-CceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCC-EEEEEeCCCcEE
Q 008496 348 EWKQQFEFHS--GPTLDVDWRN-NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGS-LLASCSDDVTAK 423 (563)
Q Consensus 348 ~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~-~las~s~dg~i~ 423 (563)
........+. ..+.++.|.. ...+++++.|+.|++|++.. +.+..+.+|...|++++|+|++. +|++|+.|++|+
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~ 276 (435)
T 4e54_B 198 ILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVK 276 (435)
T ss_dssp EEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCC
T ss_pred ceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-ceeEEEecccceEEeeeecCCCceEEEEecCcceee
Confidence 5443333322 2345666654 45788899999999999864 56778899999999999999986 788999999999
Q ss_pred EEeCCCCceeee---ecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCC------CE
Q 008496 424 IWNMKQDKYVHD---LREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHRE------PV 494 (563)
Q Consensus 424 iwd~~~~~~~~~---~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~------~i 494 (563)
|||+++.+.... ...|...|++++|+|++. +|++++.||+|+|||+.++.+...+..|.. .+
T Consensus 277 iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~---------~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 347 (435)
T 4e54_B 277 IWDLRQVRGKASFLYSLPHRHPVNAACFSPDGA---------RLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTP 347 (435)
T ss_dssp EEETTTCCSSSCCSBCCBCSSCEEECCBCTTSS---------EEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCC
T ss_pred EEecccccccceEEEeeeccccccceeECCCCC---------eeEEEcCCCEEEEEECCCCccceEEeccccccccccee
Confidence 999987664433 357899999999999875 799999999999999999888877766542 23
Q ss_pred EEEEEcCCCCEEEEEeC------------CCcEEEEecCCCeeEEEEec--CCCEEEE-EEcCCCCEEEEEECCCeEEEE
Q 008496 495 YSLAFSPTGEYLASGSL------------DKSMHIWSLKEGKIVKTYTG--NGGIFEV-CWNKEGDKIAACFANHTVCVL 559 (563)
Q Consensus 495 ~~l~~spdg~~lasgs~------------dg~v~iw~~~~~~~~~~~~~--~~~i~~l-~w~~~g~~la~~~~~~~v~v~ 559 (563)
..+.|+|++.++++++. ++.|++||..+++++..+.. ...|.++ +|+|+|++||+|+ |+.|.||
T Consensus 348 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW 426 (435)
T 4e54_B 348 IKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIW 426 (435)
T ss_dssp CBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEEC
T ss_pred EEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEE
Confidence 45677888777776643 35799999999999887643 3457776 6999999999885 7799999
Q ss_pred Eee
Q 008496 560 DFR 562 (563)
Q Consensus 560 ~~~ 562 (563)
|++
T Consensus 427 ~~~ 429 (435)
T 4e54_B 427 SQQ 429 (435)
T ss_dssp CCC
T ss_pred ECC
Confidence 975
No 82
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=5.7e-35 Score=299.09 Aligned_cols=284 Identities=25% Similarity=0.470 Sum_probs=232.8
Q ss_pred eEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeCCCe
Q 008496 218 VCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQ 297 (563)
Q Consensus 218 V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg~ 297 (563)
.+.++||++ ++||+| .|++|+|||+.++... ..+. ...+...|++|+|+|+|++|++|+.||.
T Consensus 108 ~~~l~wS~~-n~lAvg-ld~tV~lWd~~tg~~~-------------~~~~--~~~~~~~V~sv~fspdg~~lasgs~Dg~ 170 (420)
T 4gga_A 108 LNLVDWSSG-NVLAVA-LDNSVYLWSASSGDIL-------------QLLQ--MEQPGEYISSVAWIKEGNYLAVGTSSAE 170 (420)
T ss_dssp CBCEEECTT-SEEEEE-ETTEEEEEETTTCCEE-------------EEEE--CCSTTCCEEEEEECTTSSEEEEEETTSC
T ss_pred ceeEEECCC-CEEEEE-eCCEEEEEECCCCCEE-------------EEEE--ecCCCCcEEEEEECCCCCEEEEEECCCe
Confidence 578999975 577776 5999999999876421 1111 1234567999999999999999999999
Q ss_pred EEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCC-ceeEEeeecccCeEEEecCC-CceEEEE
Q 008496 298 ARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE-EWKQQFEFHSGPTLDVDWRN-NVSFATS 374 (563)
Q Consensus 298 i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 374 (563)
|+||+.. +.....+.+|...|.++.|+ +..|++|+.|+.+++||.... .....+..|...+..+.|.. ...++++
T Consensus 171 v~iWd~~~~~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~ 248 (420)
T 4gga_A 171 VQLWDVQQQKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASG 248 (420)
T ss_dssp EEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred EEEEEcCCCcEEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeee
Confidence 9999976 56677889999999998875 579999999999999998764 44567788888888888865 4577899
Q ss_pred eCCCeEEEEEcCCCc----ceeeecCCCcceeEEEECCCCC-EEEE--EeCCCcEEEEeCCCCceeeeecccCCCEEEEE
Q 008496 375 STDNMIYVCKIGENR----PIKTFAGHQGEVNCVKWDPTGS-LLAS--CSDDVTAKIWNMKQDKYVHDLREHSKEIYTIR 447 (563)
Q Consensus 375 ~~d~~i~~~~~~~~~----~~~~~~~h~~~i~~~~~~~~~~-~las--~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~ 447 (563)
+.|+.+++|+..... ++..+..|.+.|.+++|+|.+. ++++ |+.|++|++||+.++.+...+..| ..+.++.
T Consensus 249 ~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~ 327 (420)
T 4gga_A 249 GNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSIL 327 (420)
T ss_dssp ETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECS-SCEEEEE
T ss_pred eccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccc-cceeeee
Confidence 999999999997654 4567788999999999999764 5554 457999999999999988877655 5688999
Q ss_pred EccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEE
Q 008496 448 WSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVK 527 (563)
Q Consensus 448 ~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~ 527 (563)
|+|++. .++.++|+.|+.|+|||+.+++++.++.+|..+|++++|||||++|||||.|++|+|||+.+....+
T Consensus 328 ~~~~~~-------~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~ 400 (420)
T 4gga_A 328 WSPHYK-------ELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPAR 400 (420)
T ss_dssp EETTTT-------EEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC-
T ss_pred ecCCCC-------eEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCccc
Confidence 999875 1233334579999999999999999999999999999999999999999999999999997655443
Q ss_pred E
Q 008496 528 T 528 (563)
Q Consensus 528 ~ 528 (563)
.
T Consensus 401 ~ 401 (420)
T 4gga_A 401 R 401 (420)
T ss_dssp -
T ss_pred h
Confidence 3
No 83
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=9.3e-36 Score=306.45 Aligned_cols=292 Identities=22% Similarity=0.405 Sum_probs=237.3
Q ss_pred ecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEE
Q 008496 211 LEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLA 290 (563)
Q Consensus 211 l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~ 290 (563)
..+|...|.+++| ++++|++|+.||+|++||+.++.. ...+ ..+...|++++| ++++|+
T Consensus 129 ~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~-------------~~~~----~~h~~~v~~l~~--~~~~l~ 187 (435)
T 1p22_A 129 RSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLEC-------------KRIL----TGHTGSVLCLQY--DERVII 187 (435)
T ss_dssp CCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCE-------------EEEE----CCCSSCEEEEEC--CSSEEE
T ss_pred ccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeE-------------EEEE----cCCCCcEEEEEE--CCCEEE
Confidence 3467788998877 789999999999999999876432 1112 235678999999 788999
Q ss_pred EEeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCcee---EEeeecccCeEEEecC
Q 008496 291 TGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWK---QQFEFHSGPTLDVDWR 366 (563)
Q Consensus 291 sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~---~~~~~~~~~~~~~~~~ 366 (563)
+|+.||.|++|+.. +.....+.+|..+|.+++|++ .+|++|+.|++|++||+.++... ..+..|...+..+.|
T Consensus 188 sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~- 264 (435)
T 1p22_A 188 TGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF- 264 (435)
T ss_dssp EEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE-
T ss_pred EEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe-
Confidence 99999999999975 567778899999999999974 59999999999999999887655 566778888999998
Q ss_pred CCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEE
Q 008496 367 NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTI 446 (563)
Q Consensus 367 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~ 446 (563)
+...+++++.|+.|++|++.+..++..+.+|...|.+++| ++++|++|+.||.|++||++++.++..+.+|...|.++
T Consensus 265 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~ 342 (435)
T 1p22_A 265 DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCI 342 (435)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEE
T ss_pred CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEE
Confidence 6678899999999999999999999999999999999999 47899999999999999999999999999999999999
Q ss_pred EEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe---------EEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q 008496 447 RWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK---------LLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHI 517 (563)
Q Consensus 447 ~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~---------~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~i 517 (563)
+|. +. +|++|+.||.|++||+..+. ++..+.+|..+|++++| ++.+|++|+.||.|++
T Consensus 343 ~~~--~~---------~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~i 409 (435)
T 1p22_A 343 RFD--NK---------RIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILI 409 (435)
T ss_dssp ECC--SS---------EEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEE
T ss_pred Eec--CC---------EEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEE
Confidence 983 22 79999999999999987665 88899999999999999 7889999999999999
Q ss_pred EecCCCeeEEEEecCCCEEEEEEc
Q 008496 518 WSLKEGKIVKTYTGNGGIFEVCWN 541 (563)
Q Consensus 518 w~~~~~~~~~~~~~~~~i~~l~w~ 541 (563)
||+.+...............+.|.
T Consensus 410 wd~~~~~~~~~~~~~~~~~~~~~~ 433 (435)
T 1p22_A 410 WDFLNDPAAQAEPPRSPSRTYTYI 433 (435)
T ss_dssp EC----------------------
T ss_pred EECCCCCCcccCCCCCCccceeee
Confidence 999887655444333344444443
No 84
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=4.7e-35 Score=303.71 Aligned_cols=269 Identities=28% Similarity=0.437 Sum_probs=242.3
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeee
Q 008496 277 VTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEF 355 (563)
Q Consensus 277 V~~l~~s~~g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~ 355 (563)
++++.+ ++++|++|+.||.|++|+.. +.....+.+|.++|++++|+|++ +|++|+.||+|++||+.+++....+..
T Consensus 125 ~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~ 201 (464)
T 3v7d_B 125 ITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEG 201 (464)
T ss_dssp EEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred EEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECC
Confidence 566666 56799999999999999965 56777889999999999999988 999999999999999999999999999
Q ss_pred cccCeEEEecC---CCceEEEEeCCCeEEEEEcCCCcc-----------------------eeeecCCCcceeEEEECCC
Q 008496 356 HSGPTLDVDWR---NNVSFATSSTDNMIYVCKIGENRP-----------------------IKTFAGHQGEVNCVKWDPT 409 (563)
Q Consensus 356 ~~~~~~~~~~~---~~~~~~~~~~d~~i~~~~~~~~~~-----------------------~~~~~~h~~~i~~~~~~~~ 409 (563)
|..++.++.|. +...+++++.|+.|++|++..... +..+.+|...|.++ +++
T Consensus 202 h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~ 279 (464)
T 3v7d_B 202 HNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGH 279 (464)
T ss_dssp CSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEE
T ss_pred CCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCC
Confidence 99999988875 446789999999999999976542 45678898888887 567
Q ss_pred CCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecC
Q 008496 410 GSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG 489 (563)
Q Consensus 410 ~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 489 (563)
+++|++|+.|+.|++||+.+++.+..+.+|...|++++|+|++. +|++|+.||.|++||+++++++..+.+
T Consensus 280 ~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~---------~l~sg~~dg~i~vwd~~~~~~~~~~~~ 350 (464)
T 3v7d_B 280 GNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERK---------RCISASMDTTIRIWDLENGELMYTLQG 350 (464)
T ss_dssp TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTT---------EEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCC---------EEEEEeCCCcEEEEECCCCcEEEEEeC
Confidence 89999999999999999999999999999999999999999875 789999999999999999999999999
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEecCCCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496 490 HREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR 562 (563)
Q Consensus 490 h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~g~~la~~~~~~~v~v~~~~ 562 (563)
|..+|.+++|+ +.+|++|+.||.|++||+.++.....+.....+..++|+++|+.|++|+ ++.|.|||++
T Consensus 351 h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~ 420 (464)
T 3v7d_B 351 HTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLR 420 (464)
T ss_dssp CSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE-TTEEEEEETT
T ss_pred CCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEec-CCeEEEEECC
Confidence 99999999997 5799999999999999999988877777667778899999999999998 8999999975
No 85
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=1.5e-34 Score=283.71 Aligned_cols=276 Identities=23% Similarity=0.465 Sum_probs=236.1
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEEcC-CceeEee--ccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEe
Q 008496 277 VTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTL--SKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF 353 (563)
Q Consensus 277 V~~l~~s~~g~~l~sg~~dg~i~vw~~~-~~~~~~~--~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~ 353 (563)
..+|+||+++ +|++| .|++|+|||.. ++....+ .+|...|++++|+|++++|++|+.|++|++||+++++.+..+
T Consensus 28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~ 105 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM 105 (318)
T ss_dssp CBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred ceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEe
Confidence 5679999986 67665 59999999976 5555444 578889999999999999999999999999999999999999
Q ss_pred eecccCeEEEecCCCceEEEEeCCCeEEEEEcCCC-cceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCce
Q 008496 354 EFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGEN-RPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY 432 (563)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~-~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~ 432 (563)
..|...+..+.+.+ ..+++++.++.+.+|+.... ..+..+.+|...+.++.+++++++|++++.|++|++||+.+++.
T Consensus 106 ~~h~~~~~~~~~~~-~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~ 184 (318)
T 4ggc_A 106 TSHSARVGSLSWNS-YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEG 184 (318)
T ss_dssp ECCSSCEEEEEEET-TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTT
T ss_pred cCccceEEEeecCC-CEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcc
Confidence 99988887776654 46888999999999998765 45677889999999999999999999999999999999987653
Q ss_pred ----eeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEE
Q 008496 433 ----VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLAS 508 (563)
Q Consensus 433 ----~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~las 508 (563)
......|...|.++.+.|.+.. -..+++++.+++|++||........... +...+..+.|+|++..+++
T Consensus 185 ~~~~~~~~~~~~~~v~~~~~~~~~~~------~~~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~ 257 (318)
T 4ggc_A 185 GWVPLQTFTQHQGAVKAVAWCPWQSN------VLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKELIS 257 (318)
T ss_dssp BSCCSEEECCCCSCEEEEEECTTSTT------EEEEEECTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEEETTTTEEEE
T ss_pred cccceeeecccCCceEEEEecCCCCc------EEEEEecCCCCEEEEEeccccccccccc-ceeeeeeeeecccccceEE
Confidence 3445567889999999987642 2345678889999999999888776655 6678999999999998877
Q ss_pred Ee--CCCcEEEEecCCCeeEEEEecC-CCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496 509 GS--LDKSMHIWSLKEGKIVKTYTGN-GGIFEVCWNKEGDKIAACFANHTVCVLDFR 562 (563)
Q Consensus 509 gs--~dg~v~iw~~~~~~~~~~~~~~-~~i~~l~w~~~g~~la~~~~~~~v~v~~~~ 562 (563)
++ .|+.|+|||+.+++++.++.++ +.|++++|+|+|++||+|+.|++|+|||+.
T Consensus 258 ~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~ 314 (318)
T 4ggc_A 258 GHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCF 314 (318)
T ss_dssp EECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCS
T ss_pred EEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECC
Confidence 65 7999999999999999999874 579999999999999999999999999974
No 86
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=4.7e-35 Score=301.16 Aligned_cols=268 Identities=29% Similarity=0.537 Sum_probs=240.9
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeE
Q 008496 273 KSKDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQ 351 (563)
Q Consensus 273 ~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~ 351 (563)
+...|++++| ++++|++|+.||.|++|+.. +.....+.+|.++|++++| ++++|++|+.||+|++||+.+++...
T Consensus 132 ~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~ 207 (435)
T 1p22_A 132 TSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLN 207 (435)
T ss_dssp SCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEE
T ss_pred CCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEE
Confidence 3467888887 78999999999999999975 5667788999999999999 77899999999999999999999999
Q ss_pred EeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcce---eeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCC
Q 008496 352 QFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPI---KTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMK 428 (563)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~---~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~ 428 (563)
.+..|...+.++.|.+ ..+++++.|+.|++|++.....+ ..+.+|...|.+++| ++++|++|+.||.|++||++
T Consensus 208 ~~~~h~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~ 284 (435)
T 1p22_A 208 TLIHHCEAVLHLRFNN-GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTS 284 (435)
T ss_dssp EECCCCSCEEEEECCT-TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETT
T ss_pred EEcCCCCcEEEEEEcC-CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECC
Confidence 9999999999999964 58899999999999999877655 678899999999999 78999999999999999999
Q ss_pred CCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEE
Q 008496 429 QDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLAS 508 (563)
Q Consensus 429 ~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~las 508 (563)
+++.+..+..|...|.++.|.+. ++++|+.||.|++||+++++++..+.+|..+|.+++| ++.+|++
T Consensus 285 ~~~~~~~~~~~~~~v~~~~~~~~-----------~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~s 351 (435)
T 1p22_A 285 TCEFVRTLNGHKRGIACLQYRDR-----------LVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVS 351 (435)
T ss_dssp TCCEEEEEECCSSCEEEEEEETT-----------EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEE
T ss_pred cCcEEEEEcCCCCcEEEEEeCCC-----------EEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEE
Confidence 99999999999999999999532 7899999999999999999999999999999999999 7889999
Q ss_pred EeCCCcEEEEecCCCe---------eEEEEec-CCCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496 509 GSLDKSMHIWSLKEGK---------IVKTYTG-NGGIFEVCWNKEGDKIAACFANHTVCVLDFR 562 (563)
Q Consensus 509 gs~dg~v~iw~~~~~~---------~~~~~~~-~~~i~~l~w~~~g~~la~~~~~~~v~v~~~~ 562 (563)
|+.||.|++||+.++. .+..+.+ .+.|.+++| +|+.|++|+.||.|.|||+.
T Consensus 352 g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~ 413 (435)
T 1p22_A 352 GAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFL 413 (435)
T ss_dssp EETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC--
T ss_pred EeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECC
Confidence 9999999999997665 6777765 456889999 78899999999999999985
No 87
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=2.7e-36 Score=308.72 Aligned_cols=283 Identities=13% Similarity=0.127 Sum_probs=239.8
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEEcCCce-eEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeee
Q 008496 277 VTTLDWNGEGTLLATGSYDGQARIWSTNGDL-KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEF 355 (563)
Q Consensus 277 V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~-~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~ 355 (563)
+++++|+|+|++|++|+.||.+++|+..... ...+..| ..+....|+|++++|++|+.|+.|++||+.++.....+..
T Consensus 59 ~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 137 (420)
T 3vl1_A 59 GKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQA 137 (420)
T ss_dssp CTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTS
T ss_pred ccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeeccc
Confidence 5578999999999999999999999986532 2233444 4455557899999999999999999999999988888888
Q ss_pred cccCeEEEecCCC-ceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceee
Q 008496 356 HSGPTLDVDWRNN-VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVH 434 (563)
Q Consensus 356 ~~~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~ 434 (563)
|...+.++.|.++ ..+++++.|+.|++|++...+.+..+.+|.+.|.+++|+|++++|++|+.|++|++||+++++.+.
T Consensus 138 h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~ 217 (420)
T 3vl1_A 138 HVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIH 217 (420)
T ss_dssp SSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEE
T ss_pred ccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeE
Confidence 9999999999754 578899999999999999999999999999999999999999999999999999999999999888
Q ss_pred eecc---cCCCEEEEEEccCCCC-------------CCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEec-CCCCCEEEE
Q 008496 435 DLRE---HSKEIYTIRWSPTGSG-------------TNNPNQQLILASASFDSTVKLWDVELGKLLYSLN-GHREPVYSL 497 (563)
Q Consensus 435 ~~~~---~~~~i~~~~~~p~~~~-------------~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~h~~~i~~l 497 (563)
.+.. |...+.+++|.|.+.. ..+|+. .+|++|+.||.|++||+++++.+..+. +|..+|+++
T Consensus 218 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~ 296 (420)
T 3vl1_A 218 TFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYG-KYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSL 296 (420)
T ss_dssp EECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTT-EEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEE
T ss_pred EeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCC-CEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeE
Confidence 8774 5677888888664321 123433 468999999999999999998877764 588899999
Q ss_pred EEcCCCC-EEEEEeCCCcEEEEecCCCee-EEEEec--CCCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496 498 AFSPTGE-YLASGSLDKSMHIWSLKEGKI-VKTYTG--NGGIFEVCWNKEGDKIAACFANHTVCVLDFR 562 (563)
Q Consensus 498 ~~spdg~-~lasgs~dg~v~iw~~~~~~~-~~~~~~--~~~i~~l~w~~~g~~la~~~~~~~v~v~~~~ 562 (563)
+|+|++. +|++|+.||.|++||+++++. +..+.. ...+..+.| ++|+.|++++.|+.|.|||++
T Consensus 297 ~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~ 364 (420)
T 3vl1_A 297 TVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIIS 364 (420)
T ss_dssp EECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEEC
T ss_pred EEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEecc
Confidence 9999998 999999999999999998753 566654 345777755 588899999999999999975
No 88
>2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A
Probab=100.00 E-value=1.1e-39 Score=239.21 Aligned_cols=86 Identities=50% Similarity=0.825 Sum_probs=70.2
Q ss_pred CcCccchhhhhHHHHHhcCCceehhccccccCCccCCCCCCCCCchhHHHHHHhhheeeeeeeccCCCCCCCcccccccc
Q 008496 3 SITSEELNYLVFRYLQESGLLHSAFVLGYEAGINKCNIDGNLVPPRALITFVQKGLQYLEMEANLSNSDVDMDEDFSFLQ 82 (563)
Q Consensus 3 ~its~evN~Li~rYlqE~g~~~sA~~~~~E~~~~~~~~~~~~ip~gaLv~~~qKgl~y~~~e~~~~~~~~~~~~~~~~~~ 82 (563)
||||+||||||||||||+||.||||+|++||+|.++++++.+|||||||+||||||||+++|.++++++...+.. ++.
T Consensus 2 sitsdevN~LI~RYLqEsGf~hsAf~f~~Es~i~~~~~~~~~VppgaLVsllQKGL~Y~~~E~~~~~~g~~~~~~--~~~ 79 (90)
T 2xtc_A 2 SITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQSNINGTLVPPAALISILQKGLQYVEAEISINEDGTVFDGR--PIE 79 (90)
T ss_dssp CCCHHHHHHHHHHHHHHTTCHHHHHHHHHHTTGGGSCCCGGGSCTTHHHHHHHHHHHHHHHHHHTTSSCCTTCC------
T ss_pred CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCccccccccCCcchHHHHHHHHHHHHHHHHHhcCCCCccCCC--CCC
Confidence 799999999999999999999999999999999999998889999999999999999999999999887765543 345
Q ss_pred cccccccc
Q 008496 83 PMDLITKD 90 (563)
Q Consensus 83 ~~~~~~~~ 90 (563)
++++...+
T Consensus 80 ~~~ll~~~ 87 (90)
T 2xtc_A 80 SLSLIDAV 87 (90)
T ss_dssp --------
T ss_pred chhhhhhc
Confidence 55555444
No 89
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.6e-35 Score=295.39 Aligned_cols=255 Identities=25% Similarity=0.410 Sum_probs=211.0
Q ss_pred eeEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCC--
Q 008496 208 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE-- 285 (563)
Q Consensus 208 ~~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~-- 285 (563)
+.++.+|...|++++|+|++++||+|+.|+.|+||++..... .....+ ..+...|++++|+++
T Consensus 4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~-----------~~~~~~----~~h~~~v~~~~~~~~~~ 68 (379)
T 3jrp_A 4 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-----------KLIDTL----TGHEGPVWRVDWAHPKF 68 (379)
T ss_dssp -CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEE-----------EEEEEE----CCCSSCEEEEEECCGGG
T ss_pred cEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcc-----------eeeeEe----cCCCCcEEEEEeCCCCC
Confidence 457889999999999999999999999999999999863210 111222 235678999999987
Q ss_pred CCEEEEEeCCCeEEEEEcCCc---eeEeeccCCCCEEEEEeCCC--CCEEEEeeCCCcEEEEECCCCceeEEeeecccCe
Q 008496 286 GTLLATGSYDGQARIWSTNGD---LKCTLSKHKGPIFSLKWNKK--GDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPT 360 (563)
Q Consensus 286 g~~l~sg~~dg~i~vw~~~~~---~~~~~~~h~~~V~~l~~~~~--~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~ 360 (563)
+++|++|+.||.|++|+.... ....+..|..+|.+++|+|+ +.+|++++.|++|++||+++....
T Consensus 69 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~---------- 138 (379)
T 3jrp_A 69 GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTT---------- 138 (379)
T ss_dssp CSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCC----------
T ss_pred CCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCce----------
Confidence 999999999999999998654 55677889999999999999 999999999999999999765321
Q ss_pred EEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECC-------------CCCEEEEEeCCCcEEEEeC
Q 008496 361 LDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP-------------TGSLLASCSDDVTAKIWNM 427 (563)
Q Consensus 361 ~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~-------------~~~~las~s~dg~i~iwd~ 427 (563)
....+.+|...|.+++|+| ++.+|++|+.|+.|++||+
T Consensus 139 -----------------------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~ 189 (379)
T 3jrp_A 139 -----------------------------SPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKY 189 (379)
T ss_dssp -----------------------------CEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEE
T ss_pred -----------------------------eeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEe
Confidence 1123456888899999999 6999999999999999999
Q ss_pred CCCc----eeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe-----EEEEecCCCCCEEEEE
Q 008496 428 KQDK----YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK-----LLYSLNGHREPVYSLA 498 (563)
Q Consensus 428 ~~~~----~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~-----~~~~~~~h~~~i~~l~ 498 (563)
+++. ....+..|...|.+++|+|++. ...+|++++.||.|++||++.+. .+.....|..+|++++
T Consensus 190 ~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~------~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~ 263 (379)
T 3jrp_A 190 NSDAQTYVLESTLEGHSDWVRDVAWSPTVL------LRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRAS 263 (379)
T ss_dssp ETTTTEEEEEEEECCCSSCEEEEEECCCCS------SSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEE
T ss_pred cCCCcceeeEEEEecccCcEeEEEECCCCC------CCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEE
Confidence 7654 4467788999999999999831 01389999999999999998763 2223344888999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEecCC
Q 008496 499 FSPTGEYLASGSLDKSMHIWSLKE 522 (563)
Q Consensus 499 ~spdg~~lasgs~dg~v~iw~~~~ 522 (563)
|+|+|++|++++.||.|++|++..
T Consensus 264 ~s~~g~~l~~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 264 WSLSGNVLALSGGDNKVTLWKENL 287 (379)
T ss_dssp ECSSSCCEEEEESSSSEEEEEEEE
T ss_pred EcCCCCEEEEecCCCcEEEEeCCC
Confidence 999999999999999999999874
No 90
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.6e-36 Score=313.85 Aligned_cols=294 Identities=12% Similarity=0.084 Sum_probs=218.7
Q ss_pred eEecCCCCceEEEEECCC------CCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEE
Q 008496 209 TILEGHTSEVCACAWSPA------GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDW 282 (563)
Q Consensus 209 ~~l~~h~~~V~~~~~sp~------~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~ 282 (563)
.++.+|.+.|.+++|+|+ +.+||+|+.||+|+||++..+...... .............+...|++++|
T Consensus 201 ~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~------~~~~~~p~~~l~~h~~~v~sv~~ 274 (524)
T 2j04_B 201 QTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHV------FKMCEKPSLTLSLADSLITTFDF 274 (524)
T ss_dssp EEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSE------EECCCSCSEEECCTTTCEEEEEE
T ss_pred EEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccccc------ceeecCceEEEEcCCCCEEEEEe
Confidence 346778899999999997 579999999999999999765321100 00000000011235678999999
Q ss_pred CCCCCEEEEEeCCCeEEEEEcCC--ceeEeeccCCCCEEEE--EeCCCC-CEEEEeeCCCcEEEEECCCCceeEEeeecc
Q 008496 283 NGEGTLLATGSYDGQARIWSTNG--DLKCTLSKHKGPIFSL--KWNKKG-DYLLTGSCDKTAIVWDVKTEEWKQQFEFHS 357 (563)
Q Consensus 283 s~~g~~l~sg~~dg~i~vw~~~~--~~~~~~~~h~~~V~~l--~~~~~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~ 357 (563)
++++ .|++|+.||+|++||+.. .....+.+|..+|+++ .|+|++ .+|+||+.|++|+|||+++++....+..|.
T Consensus 275 s~~~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~ 353 (524)
T 2j04_B 275 LSPT-TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRF 353 (524)
T ss_dssp SSSS-EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEEC
T ss_pred cCCC-eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccccccccc
Confidence 9864 899999999999999873 3345688999999999 678888 899999999999999999887766666554
Q ss_pred c--CeEEEecCC-CceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceee
Q 008496 358 G--PTLDVDWRN-NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVH 434 (563)
Q Consensus 358 ~--~~~~~~~~~-~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~ 434 (563)
. .+..+.|.+ ...+++++.|++|++|++.....+..+.+|.+.|++++|+|++++|++|+.|++|++||.... ..+
T Consensus 354 ~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~-~~~ 432 (524)
T 2j04_B 354 RGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARR-LLH 432 (524)
T ss_dssp SCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS-TTT
T ss_pred ccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHh-hcc
Confidence 3 466788876 457888999999999999998888889999999999999999999999999999999998654 222
Q ss_pred eecc-----cCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCC-CCeEEEEecCCCCCEEEEEEcCCC---CE
Q 008496 435 DLRE-----HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE-LGKLLYSLNGHREPVYSLAFSPTG---EY 505 (563)
Q Consensus 435 ~~~~-----~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~-~~~~~~~~~~h~~~i~~l~~spdg---~~ 505 (563)
.++. +...+++++|+|++. ++ ... +.+++|+.. ++.++..+.+|..+|++|+|||++ .+
T Consensus 433 ~~~~~~~~~~~~~v~~v~~sp~g~---------~~-~~~--~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~ 500 (524)
T 2j04_B 433 GIKNSSATQKSLRLWKWDYSIKDD---------KY-RID--SSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKC 500 (524)
T ss_dssp CC------CCCCEEEECBCCSSSC---------EE-EEC--CCCCCCC-------------CCCSCCCEEECCSTTTTTE
T ss_pred ccccCccceeeeEEEEeccCCCCC---------eE-Ecc--CCceecccccCCcceeeecCCCceEEEEECCCCCCccHH
Confidence 2211 112467889988774 22 222 234455443 477888899999999999999996 49
Q ss_pred EEEEeCCCcEEEEecCC
Q 008496 506 LASGSLDKSMHIWSLKE 522 (563)
Q Consensus 506 lasgs~dg~v~iw~~~~ 522 (563)
||+|+.||.|+||++..
T Consensus 501 lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 501 YAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp EEEECTTSEEEEEECSC
T ss_pred HHhhccCceEEEEEccc
Confidence 99999999999999864
No 91
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.3e-37 Score=311.78 Aligned_cols=299 Identities=12% Similarity=0.136 Sum_probs=238.2
Q ss_pred CCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEee-------------e---cccccCCCCe
Q 008496 214 HTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHV-------------K---GRTNEKSKDV 277 (563)
Q Consensus 214 h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~-------------~---~~~~~~~~~V 277 (563)
-...|.+++|||||+++||++.|++|+ +...+... ..++..+..+... . .....+...|
T Consensus 14 ~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l---~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~V 88 (588)
T 2j04_A 14 FEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDI---NCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVCYP 88 (588)
T ss_dssp CSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSCC---SSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSCCE
T ss_pred hhccEEEEEECCCCCEEEEEcCCceee--ccccccee---cCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCCcE
Confidence 347899999999999999999999999 64444322 1222222222110 0 0011235779
Q ss_pred EEEEECCCCCEEEEEeCCCeEEEEEcCCceeEeeccCCC-----CEEEEEeCCCCCEEEEeeCCCcEEEEECCCCce---
Q 008496 278 TTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKG-----PIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEW--- 349 (563)
Q Consensus 278 ~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~-----~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~--- 349 (563)
++++|||+|.+||+++.||.|++|+..+ +...+. |.. .|.+++|||+|++|++|+.||+|++||+.++..
T Consensus 89 ~~vawSPdG~~LAs~s~dg~V~iwd~~~-~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~ 166 (588)
T 2j04_A 89 RVCKPSPIDDWMAVLSNNGNVSVFKDNK-MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTP 166 (588)
T ss_dssp EEEEECSSSSCEEEEETTSCEEEEETTE-EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCC
T ss_pred EEEEECCCCCEEEEEeCCCcEEEEeCCc-eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccc
Confidence 9999999999999999999999999766 555566 666 499999999999999999999999999998753
Q ss_pred ----eEEe----eecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcc---eeee-cCCCcceeEEEECCCCCEEEEEe
Q 008496 350 ----KQQF----EFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRP---IKTF-AGHQGEVNCVKWDPTGSLLASCS 417 (563)
Q Consensus 350 ----~~~~----~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~---~~~~-~~h~~~i~~~~~~~~~~~las~s 417 (563)
...+ ..|...+.+++|.++. +++++.|++|++|++..... .+++ .+|...|.+++|+ ++.||+++
T Consensus 167 ~~i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~ 243 (588)
T 2j04_A 167 EFYFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC 243 (588)
T ss_dssp CCEEEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC
T ss_pred cceeeeeeecccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe
Confidence 4555 4455789999999888 99999999999999987763 3456 4888999999999 68999988
Q ss_pred CCCcEEEEeCCCCceeeeecccCCCEEEEEE--ccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEE
Q 008496 418 DDVTAKIWNMKQDKYVHDLREHSKEIYTIRW--SPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVY 495 (563)
Q Consensus 418 ~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~--~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~ 495 (563)
+++|++||+.+++......+|...++.+.| +|++. .|++++.||+ ++|...
T Consensus 244 -~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~---------~La~a~edG~-klw~~d---------------- 296 (588)
T 2j04_A 244 -PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKEST---------ILLMSNKTSY-KVLLED---------------- 296 (588)
T ss_dssp -SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCE---------EEEECSSCEE-EEEESS----------------
T ss_pred -CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCC---------EEEEEcCCCC-EEEeec----------------
Confidence 699999999988874444489999999999 88774 7899999999 999876
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEecCCCEEEEEEcCCCCEEEEEEC
Q 008496 496 SLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFA 552 (563)
Q Consensus 496 ~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~g~~la~~~~ 552 (563)
.++|+||+..+|+. |+++++|+...+. ...+.+...|++++|+|||+.||+++.
T Consensus 297 ~~~~spd~~l~a~~--d~~v~lW~~~g~~-l~~~~~~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 297 ELHVTADNIIAPYL--EKKFKKWSTIWNE-FNNYETTLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp SEEEECCCSSHHHH--HHHHHHTTTTTTS-SSSSCCEEEEEEEEECTTSSEEEEEEE
T ss_pred cEEECCCceEEEEc--CCEEEEEECCCCc-eeeeccceEEEEEEECCCCCEEEEEEe
Confidence 26699999998875 9999999985544 334455556899999999999999864
No 92
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=1.9e-35 Score=293.44 Aligned_cols=269 Identities=14% Similarity=0.197 Sum_probs=236.9
Q ss_pred cCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCce----eEeeccCCCCEEEEEeCCCCC-EEEEeeCCCcEEEEEC-C
Q 008496 272 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDL----KCTLSKHKGPIFSLKWNKKGD-YLLTGSCDKTAIVWDV-K 345 (563)
Q Consensus 272 ~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~----~~~~~~h~~~V~~l~~~~~~~-~l~s~s~D~~v~iwd~-~ 345 (563)
.|...|++++|+|++.+|++|+.||.|++|+..... ...+..|..+|++++|+|+++ +|++|+.|+.|++||+ .
T Consensus 9 ~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~ 88 (342)
T 1yfq_A 9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIG 88 (342)
T ss_dssp CCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSS
T ss_pred CCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEecc
Confidence 456789999999999999999999999999976543 455668999999999999999 9999999999999999 8
Q ss_pred CCceeEEeee--cccCeEEEecCCCceEEEEeCCCeEEEEEcCC---------CcceeeecCCCcceeEEEECCCCCEEE
Q 008496 346 TEEWKQQFEF--HSGPTLDVDWRNNVSFATSSTDNMIYVCKIGE---------NRPIKTFAGHQGEVNCVKWDPTGSLLA 414 (563)
Q Consensus 346 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~---------~~~~~~~~~h~~~i~~~~~~~~~~~la 414 (563)
++.. ..+.. |...+.++.|.+...+++++.|+.|++|++.. .+++..+. |...|.+++|+|++ ++
T Consensus 89 ~~~~-~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~--l~ 164 (342)
T 1yfq_A 89 SPSF-QALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR--LI 164 (342)
T ss_dssp SSSE-EECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE--EE
T ss_pred CCce-EeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecCCc--EE
Confidence 7765 56667 88899999997777889999999999999987 67777776 88999999999987 89
Q ss_pred EEeCCCcEEEEeCCC-Cc--eeeeecccCCCEEEEEEcc-CCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC------eEE
Q 008496 415 SCSDDVTAKIWNMKQ-DK--YVHDLREHSKEIYTIRWSP-TGSGTNNPNQQLILASASFDSTVKLWDVELG------KLL 484 (563)
Q Consensus 415 s~s~dg~i~iwd~~~-~~--~~~~~~~~~~~i~~~~~~p-~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~------~~~ 484 (563)
+++.|+.|++||+++ .. .......|...+.+++|+| ++. ++++++.||.|++|+++.. +.+
T Consensus 165 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~---------~l~~~~~dg~i~i~~~~~~~~~~~~~~~ 235 (342)
T 1yfq_A 165 VGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQE---------GYACSSIDGRVAVEFFDDQGDDYNSSKR 235 (342)
T ss_dssp EEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGC---------EEEEEETTSEEEEEECCTTCCSTTCTTC
T ss_pred EEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCC---------EEEEEecCCcEEEEEEcCCCcccccccc
Confidence 999999999999987 44 2334456888999999999 875 7899999999999999876 777
Q ss_pred EEecCCCC---------CEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEec--CCCEEEEEEcCCCCEEEEEECC
Q 008496 485 YSLNGHRE---------PVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG--NGGIFEVCWNKEGDKIAACFAN 553 (563)
Q Consensus 485 ~~~~~h~~---------~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~--~~~i~~l~w~~~g~~la~~~~~ 553 (563)
..+..|.. +|++++|+|++++|++|+.||.|++||+.+++++..+.. ...|.+++ |+|++|++|+.|
T Consensus 236 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~D 313 (342)
T 1yfq_A 236 FAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSD 313 (342)
T ss_dssp EEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEEC
T ss_pred eeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecC
Confidence 78887765 999999999999999999999999999999999998876 45688998 999999999999
Q ss_pred Ce
Q 008496 554 HT 555 (563)
Q Consensus 554 ~~ 555 (563)
|.
T Consensus 314 g~ 315 (342)
T 1yfq_A 314 DT 315 (342)
T ss_dssp TH
T ss_pred Cc
Confidence 87
No 93
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=4.3e-34 Score=280.48 Aligned_cols=279 Identities=24% Similarity=0.442 Sum_probs=227.3
Q ss_pred eEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeCCCe
Q 008496 218 VCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQ 297 (563)
Q Consensus 218 V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg~ 297 (563)
.++++|||++ +||+| .|++|+|||+.++... +.+. ...+...|++++|+|+|++|++|+.||.
T Consensus 28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~-------------~~~~--~~~~~~~V~~v~~~~~~~~l~sgs~Dg~ 90 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGDIL-------------QLLQ--MEQPGEYISSVAWIKEGNYLAVGTSSAE 90 (318)
T ss_dssp CBCEEECTTS-EEEEE-ETTEEEEEETTTCCEE-------------EEEE--CCSTTCCEEEEEECTTSSEEEEEETTSE
T ss_pred ceEEEECCCC-EEEEE-eCCEEEEEECCCCCEE-------------EEEE--ecCCCCeEEEEEECCCCCEEEEEECCCc
Confidence 4689999886 77765 5999999999876421 1111 1234577999999999999999999999
Q ss_pred EEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCc-eeEEeeecccCeEEEecCC-CceEEEE
Q 008496 298 ARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE-WKQQFEFHSGPTLDVDWRN-NVSFATS 374 (563)
Q Consensus 298 i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~ 374 (563)
|++|+.. ++....+.+|...+.++.+ ++..+++++.++.+++|+..+.. ....+..|...+..+.+.. ...++++
T Consensus 91 v~iw~~~~~~~~~~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~ 168 (318)
T 4ggc_A 91 VQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASG 168 (318)
T ss_dssp EEEEETTTTEEEEEEECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred EEEeecCCceeEEEecCccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEE
Confidence 9999976 5667788899999887654 56799999999999999987654 4556777888888877754 4578899
Q ss_pred eCCCeEEEEEcCCCcc----eeeecCCCcceeEEEECCCCCE---EEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEE
Q 008496 375 STDNMIYVCKIGENRP----IKTFAGHQGEVNCVKWDPTGSL---LASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIR 447 (563)
Q Consensus 375 ~~d~~i~~~~~~~~~~----~~~~~~h~~~i~~~~~~~~~~~---las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~ 447 (563)
+.|+.|++|++...+. ......|.+.|.+++++|++.. +++++.+++|++||......... ..+...+..+.
T Consensus 169 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~-~~~~~~v~~~~ 247 (318)
T 4ggc_A 169 GNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSA-VDAHSQVCSIL 247 (318)
T ss_dssp ETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEE-EECSSCEEEEE
T ss_pred ecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccc-ccceeeeeeee
Confidence 9999999999976542 3455678889999999998753 34677899999999988876654 34667899999
Q ss_pred EccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 008496 448 WSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEG 523 (563)
Q Consensus 448 ~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~ 523 (563)
|+|.+. .+++++|+.|+.|+|||+++++++.++.+|..+|++++|+|||++|||||.||+|+|||+.+.
T Consensus 248 ~~~~~~-------~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 248 WSPHYK-------ELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp EETTTT-------EEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred eccccc-------ceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 999764 233445568999999999999999999999999999999999999999999999999999754
No 94
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=3.5e-34 Score=295.59 Aligned_cols=279 Identities=24% Similarity=0.444 Sum_probs=247.4
Q ss_pred ceeEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCC
Q 008496 207 DVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG 286 (563)
Q Consensus 207 ~~~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g 286 (563)
.+..+.+|...|.+++|+ +.+|++|+.||+|++|++.++.. ...+ ..+...|.+++|+ +
T Consensus 151 ~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~-------------~~~~----~~h~~~v~~~~~~--~ 209 (445)
T 2ovr_B 151 CLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGEC-------------IHTL----YGHTSTVRCMHLH--E 209 (445)
T ss_dssp EEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEE-------------EEEE----CCCSSCEEEEEEE--T
T ss_pred EEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcE-------------EEEE----CCCCCcEEEEEec--C
Confidence 456788999999999997 67999999999999999876531 1112 2346789999995 5
Q ss_pred CEEEEEeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEec
Q 008496 287 TLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW 365 (563)
Q Consensus 287 ~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 365 (563)
..+++|+.||.|++|+.. +.....+.+|..+|.++.| ++.++++|+.|+.|++||+++++....+..|...+.++.|
T Consensus 210 ~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 287 (445)
T 2ovr_B 210 KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF 287 (445)
T ss_dssp TEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE
T ss_pred CEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE
Confidence 789999999999999976 5667788899999999999 6789999999999999999999999999999999999999
Q ss_pred CCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecc---cCCC
Q 008496 366 RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLRE---HSKE 442 (563)
Q Consensus 366 ~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~---~~~~ 442 (563)
+...+++++.|+.|++|++.+.+++..+.+|...+.++.++ +++|++|+.||.|++||+++++.+..+.. |...
T Consensus 288 -~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 364 (445)
T 2ovr_B 288 -DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSA 364 (445)
T ss_dssp -CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSC
T ss_pred -CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEe--CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCC
Confidence 67788999999999999999999999999999999988874 67999999999999999999999888876 8889
Q ss_pred EEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEe-----cCCCCCEEEEEEcCCCCEEEEEeCCCc---
Q 008496 443 IYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSL-----NGHREPVYSLAFSPTGEYLASGSLDKS--- 514 (563)
Q Consensus 443 i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-----~~h~~~i~~l~~spdg~~lasgs~dg~--- 514 (563)
|++++|++. +|++|+.||.|++||+.+++.+..+ .+|..+|++++|+|+|.+||+|+.||+
T Consensus 365 v~~~~~~~~-----------~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~ 433 (445)
T 2ovr_B 365 VTCLQFNKN-----------FVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEET 433 (445)
T ss_dssp EEEEEECSS-----------EEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCC
T ss_pred EEEEEECCC-----------EEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCcc
Confidence 999999642 7999999999999999999998887 468889999999999999999999998
Q ss_pred -EEEEecCC
Q 008496 515 -MHIWSLKE 522 (563)
Q Consensus 515 -v~iw~~~~ 522 (563)
|.|||+..
T Consensus 434 ~l~v~df~~ 442 (445)
T 2ovr_B 434 KLLVLDFDV 442 (445)
T ss_dssp EEEEEECCC
T ss_pred EEEEEECCC
Confidence 99999864
No 95
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=5.9e-35 Score=292.84 Aligned_cols=276 Identities=14% Similarity=0.174 Sum_probs=216.6
Q ss_pred CCCeEEEEECCCCCEEEEEeCCC-------eEEEEEcCCce-----------eEeeccCCCCEEEEEeCCCCCEEEEe--
Q 008496 274 SKDVTTLDWNGEGTLLATGSYDG-------QARIWSTNGDL-----------KCTLSKHKGPIFSLKWNKKGDYLLTG-- 333 (563)
Q Consensus 274 ~~~V~~l~~s~~g~~l~sg~~dg-------~i~vw~~~~~~-----------~~~~~~h~~~V~~l~~~~~~~~l~s~-- 333 (563)
..+|++++|+|||++|++|+.+. .|++|+.+... ...+..|...|++++++ ++.+++|
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~ 91 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCN 91 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECC
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEEC
Confidence 35799999999999999998643 59999975321 12467888888888764 4566655
Q ss_pred ---------eCCCcEEEEECCCCceeEEe----ee-----cccCeEEEecCCCce-E--EEEeCCCeEEEEEcCCCccee
Q 008496 334 ---------SCDKTAIVWDVKTEEWKQQF----EF-----HSGPTLDVDWRNNVS-F--ATSSTDNMIYVCKIGENRPIK 392 (563)
Q Consensus 334 ---------s~D~~v~iwd~~~~~~~~~~----~~-----~~~~~~~~~~~~~~~-~--~~~~~d~~i~~~~~~~~~~~~ 392 (563)
+.|+++++|++.+......+ .. +...+..+.|.++.. + ++++.|++|++|++.+..++.
T Consensus 92 ~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~ 171 (365)
T 4h5i_A 92 ENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKF 171 (365)
T ss_dssp CCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEE
T ss_pred CCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEE
Confidence 45788999988654322111 11 112355667765543 3 345578999999999998888
Q ss_pred eecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceee--eecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCC
Q 008496 393 TFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVH--DLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD 470 (563)
Q Consensus 393 ~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~--~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~d 470 (563)
.+. |.+.|.+++|+|+|++|++++.++ +++|+..++..+. ....|...|.+++|+|++. ++++++.|
T Consensus 172 ~~~-~~~~V~~v~fspdg~~l~s~s~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~---------~l~~~s~d 240 (365)
T 4h5i_A 172 EIE-TRGEVKDLHFSTDGKVVAYITGSS-LEVISTVTGSCIARKTDFDKNWSLSKINFIADDT---------VLIAASLK 240 (365)
T ss_dssp EEE-CSSCCCEEEECTTSSEEEEECSSC-EEEEETTTCCEEEEECCCCTTEEEEEEEEEETTE---------EEEEEEES
T ss_pred EeC-CCCceEEEEEccCCceEEecccee-EEEEEeccCcceeeeecCCCCCCEEEEEEcCCCC---------EEEEEecC
Confidence 875 778899999999999999998665 5666666665543 3456888999999999875 78888888
Q ss_pred C----eEEEEeCCCCeE----EEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEE-ec-CCCEEEEEE
Q 008496 471 S----TVKLWDVELGKL----LYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTY-TG-NGGIFEVCW 540 (563)
Q Consensus 471 g----~i~iwd~~~~~~----~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~-~~-~~~i~~l~w 540 (563)
+ .+++|++..+.. ...+.+|..+|++++|||||++||+|+.|++|+|||+.+++++.++ .+ ...|++|+|
T Consensus 241 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~f 320 (365)
T 4h5i_A 241 KGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTI 320 (365)
T ss_dssp SSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEE
T ss_pred CcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEE
Confidence 7 688999876653 3467789999999999999999999999999999999999999887 43 467999999
Q ss_pred cCCCCEEEEEECCCeEEEEEee
Q 008496 541 NKEGDKIAACFANHTVCVLDFR 562 (563)
Q Consensus 541 ~~~g~~la~~~~~~~v~v~~~~ 562 (563)
+|||++||+|+.|++|+|||+.
T Consensus 321 Spdg~~laS~S~D~tvrvw~ip 342 (365)
T 4h5i_A 321 SPDSTYVASVSAANTIHIIKLP 342 (365)
T ss_dssp CTTSCEEEEEETTSEEEEEECC
T ss_pred CCCCCEEEEEeCCCeEEEEEcC
Confidence 9999999999999999999984
No 96
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=1.2e-33 Score=287.37 Aligned_cols=281 Identities=16% Similarity=0.293 Sum_probs=232.7
Q ss_pred cCCCCeEEEEECC-CCCEEEEEeCCCeEEEEEcCCce-eEee-------------ccCCCCEEEEEeCC-CCCEEEEeeC
Q 008496 272 EKSKDVTTLDWNG-EGTLLATGSYDGQARIWSTNGDL-KCTL-------------SKHKGPIFSLKWNK-KGDYLLTGSC 335 (563)
Q Consensus 272 ~~~~~V~~l~~s~-~g~~l~sg~~dg~i~vw~~~~~~-~~~~-------------~~h~~~V~~l~~~~-~~~~l~s~s~ 335 (563)
.|...|++++|+| ++++|++|+.||.|++|+..... ...+ .+|..+|.+++|+| ++.+|++++.
T Consensus 41 ~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~ 120 (408)
T 4a11_B 41 IHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSF 120 (408)
T ss_dssp CCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEET
T ss_pred ccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeC
Confidence 3567899999999 99999999999999999986432 1111 25999999999999 7789999999
Q ss_pred CCcEEEEECCCCceeEEeeecccCeEEEecCC----CceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCC
Q 008496 336 DKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN----NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGS 411 (563)
Q Consensus 336 D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~ 411 (563)
|+.|++||+.+++....+. +...+..+.|.. ...+++++.++.|++|++....++..+.+|.+.|.+++|+|+++
T Consensus 121 d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~ 199 (408)
T 4a11_B 121 DKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYD 199 (408)
T ss_dssp TSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCT
T ss_pred CCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCC
Confidence 9999999999998877766 455666666653 33688999999999999999999999999999999999999998
Q ss_pred -EEEEEeCCCcEEEEeCCCCc-eeeee---------------cccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEE
Q 008496 412 -LLASCSDDVTAKIWNMKQDK-YVHDL---------------REHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVK 474 (563)
Q Consensus 412 -~las~s~dg~i~iwd~~~~~-~~~~~---------------~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~ 474 (563)
+|++|+.||.|++||+++.. .+..+ ..|...|.+++|+|++. +|++++.||.|+
T Consensus 200 ~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---------~l~~~~~dg~i~ 270 (408)
T 4a11_B 200 YILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGL---------HLLTVGTDNRMR 270 (408)
T ss_dssp TEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSS---------EEEEEETTSCEE
T ss_pred cEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCC---------EEEEecCCCeEE
Confidence 58999999999999997664 23333 56889999999999875 789999999999
Q ss_pred EEeCCCCeEEEEecCCC-----CCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEecC-CCEEEEEEcCCCCEEE
Q 008496 475 LWDVELGKLLYSLNGHR-----EPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN-GGIFEVCWNKEGDKIA 548 (563)
Q Consensus 475 iwd~~~~~~~~~~~~h~-----~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~-~~i~~l~w~~~g~~la 548 (563)
+||+.+++....+..+. ..+........+..+++++.|+.|++||+.+++.+..+.++ ..|.+++|+|+|++|+
T Consensus 271 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 350 (408)
T 4a11_B 271 LWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELY 350 (408)
T ss_dssp EEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEE
T ss_pred EEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEE
Confidence 99999887655443221 12222222334566777788999999999999999998754 5799999999999999
Q ss_pred EEECCCeEEEEEee
Q 008496 549 ACFANHTVCVLDFR 562 (563)
Q Consensus 549 ~~~~~~~v~v~~~~ 562 (563)
+|+.||.|.|||++
T Consensus 351 s~~~dg~i~iw~~~ 364 (408)
T 4a11_B 351 SGSRDCNILAWVPS 364 (408)
T ss_dssp EEETTSCEEEEEEC
T ss_pred EECCCCeEEEEeCC
Confidence 99999999999986
No 97
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=4e-34 Score=311.90 Aligned_cols=243 Identities=26% Similarity=0.408 Sum_probs=213.5
Q ss_pred ccCCCCeEEEEECCCC-CEEEEEeCCCeEEEEEcCC------ceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEE
Q 008496 271 NEKSKDVTTLDWNGEG-TLLATGSYDGQARIWSTNG------DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWD 343 (563)
Q Consensus 271 ~~~~~~V~~l~~s~~g-~~l~sg~~dg~i~vw~~~~------~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd 343 (563)
..|...|++++|+|++ .+|+||+.||.|++|+... .....+.+|...|.+++|+|++++|++|+.|++|++||
T Consensus 379 ~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd 458 (694)
T 3dm0_A 379 RAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWD 458 (694)
T ss_dssp ECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred ccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence 3567889999999864 7999999999999999753 23457889999999999999999999999999999999
Q ss_pred CCCCceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEE
Q 008496 344 VKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAK 423 (563)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~ 423 (563)
+.++.. +..+.+|...|.+++|+|++++|+||+.|++|+
T Consensus 459 ~~~~~~-----------------------------------------~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~ 497 (694)
T 3dm0_A 459 LAAGVS-----------------------------------------TRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIK 497 (694)
T ss_dssp TTTTEE-----------------------------------------EEEEECCSSCEEEEEECTTSSCEEEEETTSCEE
T ss_pred CCCCcc-----------------------------------------eeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEE
Confidence 987642 234567999999999999999999999999999
Q ss_pred EEeCCCCceeee---ecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEc
Q 008496 424 IWNMKQDKYVHD---LREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFS 500 (563)
Q Consensus 424 iwd~~~~~~~~~---~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s 500 (563)
+||......... ..+|...|.+++|+|++.. .+|++|+.|++|++||+++++++..+.+|...|++++|+
T Consensus 498 iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-------~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~s 570 (694)
T 3dm0_A 498 LWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQ-------PTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVS 570 (694)
T ss_dssp EECTTSCEEEEECSSTTSCSSCEEEEEECSCSSS-------CEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEC
T ss_pred EEECCCCcceeeccCCCCCCCcEEEEEEeCCCCc-------ceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEe
Confidence 999876543322 2468889999999997631 278999999999999999999999999999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEecCCCeeEEEEecCCCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496 501 PTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR 562 (563)
Q Consensus 501 pdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~g~~la~~~~~~~v~v~~~~ 562 (563)
|+|++|++|+.||.|+|||+.+++.+..+..+..|..++|+|++..|+++. ++.|.|||++
T Consensus 571 pdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~ 631 (694)
T 3dm0_A 571 PDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRYWLCAAT-EHGIKIWDLE 631 (694)
T ss_dssp TTSSEEEEEETTSBCEEEETTTTEEEECCBCSSCEEEEEECSSSSEEEEEE-TTEEEEEETT
T ss_pred CCCCEEEEEeCCCeEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEEc-CCCEEEEECC
Confidence 999999999999999999999999998888888899999999999998885 4569999975
No 98
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-33 Score=290.81 Aligned_cols=299 Identities=13% Similarity=0.054 Sum_probs=230.4
Q ss_pred CceEEEEECCCCCEEEEeeCCCcEEEEecCCCC---CcCCCCCCCc------e-----------EE-----EEE------
Q 008496 216 SEVCACAWSPAGSLLASGSGDSTARIWTIADGT---SNGGAQNGPL------N-----------VL-----VLK------ 264 (563)
Q Consensus 216 ~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~---~~~~~~~~~~------~-----------~~-----~~~------ 264 (563)
.++.+++|+|+|++|+++ .++.|++|++.++. .......... . .. ..+
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 468899999999976665 57899999998776 2111000000 0 00 000
Q ss_pred ---------eeecccccCCCCeEEEEECCCCCEE-EEEeCCCeEEEEEcC---CceeEeec--cCCCCEEEEEeCCCCCE
Q 008496 265 ---------HVKGRTNEKSKDVTTLDWNGEGTLL-ATGSYDGQARIWSTN---GDLKCTLS--KHKGPIFSLKWNKKGDY 329 (563)
Q Consensus 265 ---------~~~~~~~~~~~~V~~l~~s~~g~~l-~sg~~dg~i~vw~~~---~~~~~~~~--~h~~~V~~l~~~~~~~~ 329 (563)
........+...|++++|+|+|++| ++|+.||.|++|+.. +.....+. .|...|.+++|+|++++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 163 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTT 163 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSE
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCE
Confidence 0000011344579999999999996 899999999999976 44555554 67789999999999999
Q ss_pred EEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCC
Q 008496 330 LLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT 409 (563)
Q Consensus 330 l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~ 409 (563)
|++|+.|+.+++|++.++.... .++..+.+|.+.|++++|+|+
T Consensus 164 l~~~~~~g~v~~~~~~~~~~~~-------------------------------------~~~~~~~~h~~~v~~~~~sp~ 206 (450)
T 2vdu_B 164 VIIADKFGDVYSIDINSIPEEK-------------------------------------FTQEPILGHVSMLTDVHLIKD 206 (450)
T ss_dssp EEEEETTSEEEEEETTSCCCSS-------------------------------------CCCCCSEECSSCEEEEEEEEC
T ss_pred EEEEeCCCcEEEEecCCccccc-------------------------------------ccceeeecccCceEEEEEcCC
Confidence 9999999999999987654211 022355678999999999999
Q ss_pred ---CCEEEEEeCCCcEEEEeCCCCceeee-ecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEE
Q 008496 410 ---GSLLASCSDDVTAKIWNMKQDKYVHD-LREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLY 485 (563)
Q Consensus 410 ---~~~las~s~dg~i~iwd~~~~~~~~~-~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 485 (563)
+++|++|+.|++|++||+.++..+.. +.+|...|.+++|+ ++. +|++|+.|+.|++||+.+++++.
T Consensus 207 ~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~---------~l~s~~~d~~v~vwd~~~~~~~~ 276 (450)
T 2vdu_B 207 SDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDY---------LLLSAGGDDKIFAWDWKTGKNLS 276 (450)
T ss_dssp TTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STT---------EEEEEESSSEEEEEETTTCCEEE
T ss_pred CCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCC---------EEEEEeCCCeEEEEECCCCcEee
Confidence 99999999999999999999888777 56899999999999 765 78999999999999999999888
Q ss_pred EecC-------------------------CCCCEEEEEEcCCCCEEEEEe-CCCcEEEEec--CCC---eeEEEEecCCC
Q 008496 486 SLNG-------------------------HREPVYSLAFSPTGEYLASGS-LDKSMHIWSL--KEG---KIVKTYTGNGG 534 (563)
Q Consensus 486 ~~~~-------------------------h~~~i~~l~~spdg~~lasgs-~dg~v~iw~~--~~~---~~~~~~~~~~~ 534 (563)
.+.. ....|.+++|+|++++|++++ .|+.|+||++ .++ +.+..+..++.
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~~~ 356 (450)
T 2vdu_B 277 TFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFPYN 356 (450)
T ss_dssp EEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECSSC
T ss_pred eecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccCCc
Confidence 7753 235699999999999999999 8999999999 665 67777877788
Q ss_pred EEEEEEcCCCCEEEEEEC------CCeEEEEEee
Q 008496 535 IFEVCWNKEGDKIAACFA------NHTVCVLDFR 562 (563)
Q Consensus 535 i~~l~w~~~g~~la~~~~------~~~v~v~~~~ 562 (563)
|.+++|+|++..++++.. +..|.||.++
T Consensus 357 v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~ 390 (450)
T 2vdu_B 357 VISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYN 390 (450)
T ss_dssp EEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEE
T ss_pred eEEEEecCCcEEEEEecccCCCCCCcceEEEEEE
Confidence 999999996534443332 3447888764
No 99
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=7.5e-34 Score=285.26 Aligned_cols=241 Identities=20% Similarity=0.385 Sum_probs=213.4
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCc---eeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCce
Q 008496 273 KSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD---LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEW 349 (563)
Q Consensus 273 ~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~---~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~ 349 (563)
+..+|++++|+|+|++|++|+.||.|++|+.... ....+.+|..+|.+++|+|++++|++++.|+.|++||+.++++
T Consensus 7 ~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 86 (372)
T 1k8k_C 7 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTW 86 (372)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEE
T ss_pred cCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCee
Confidence 4577999999999999999999999999998765 6778889999999999999999999999999999999876643
Q ss_pred eEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCC
Q 008496 350 KQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ 429 (563)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~ 429 (563)
... ..+.+|...|.+++|+|++++|++|+.|+.|++||+..
T Consensus 87 ~~~---------------------------------------~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~ 127 (372)
T 1k8k_C 87 KPT---------------------------------------LVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQ 127 (372)
T ss_dssp EEE---------------------------------------EECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEET
T ss_pred eee---------------------------------------EEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecC
Confidence 221 22346788899999999999999999999999999987
Q ss_pred Cce----eeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeC------------------CCCeEEEEe
Q 008496 430 DKY----VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDV------------------ELGKLLYSL 487 (563)
Q Consensus 430 ~~~----~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~------------------~~~~~~~~~ 487 (563)
... ......|...|.+++|+|++. +|++++.||.|++||+ ..++++..+
T Consensus 128 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~---------~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (372)
T 1k8k_C 128 ENDWWVCKHIKKPIRSTVLSLDWHPNSV---------LLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFES 198 (372)
T ss_dssp TTTEEEEEEECTTCCSCEEEEEECTTSS---------EEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEEC
T ss_pred CCcceeeeeeecccCCCeeEEEEcCCCC---------EEEEEcCCCCEEEEEcccccccccccccccccccchhhheEec
Confidence 762 233357889999999999875 7899999999999995 467889999
Q ss_pred cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEecCC-CEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496 488 NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG-GIFEVCWNKEGDKIAACFANHTVCVLDFR 562 (563)
Q Consensus 488 ~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~~-~i~~l~w~~~g~~la~~~~~~~v~v~~~~ 562 (563)
.+|..+|.+++|+|++++|++|+.||.|++||+++++.+..+..+. .|..++|+|+|+.|++| .|+.+.||+++
T Consensus 199 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~ 273 (372)
T 1k8k_C 199 SSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYD 273 (372)
T ss_dssp CCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEE
T ss_pred CCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEcc
Confidence 9999999999999999999999999999999999999998887654 79999999999999888 89999999986
No 100
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5e-34 Score=287.04 Aligned_cols=257 Identities=25% Similarity=0.400 Sum_probs=215.6
Q ss_pred ceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECC--CCceeEEeeecccCeEEEecCC---CceEEEEeCCCeE
Q 008496 306 DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVK--TEEWKQQFEFHSGPTLDVDWRN---NVSFATSSTDNMI 380 (563)
Q Consensus 306 ~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~--~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~d~~i 380 (563)
.+...+.+|.++|++++|+|++++|++|+.|++|++||+. +......+..|..++.++.|.. ...+++++.|+.|
T Consensus 2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v 81 (379)
T 3jrp_A 2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV 81 (379)
T ss_dssp ---CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred CccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEE
Confidence 4456788999999999999999999999999999999998 5566677888999999999953 5788999999999
Q ss_pred EEEEcCCCc--ceeeecCCCcceeEEEECCC--CCEEEEEeCCCcEEEEeCCCCc--eeeeecccCCCEEEEEEccCCCC
Q 008496 381 YVCKIGENR--PIKTFAGHQGEVNCVKWDPT--GSLLASCSDDVTAKIWNMKQDK--YVHDLREHSKEIYTIRWSPTGSG 454 (563)
Q Consensus 381 ~~~~~~~~~--~~~~~~~h~~~i~~~~~~~~--~~~las~s~dg~i~iwd~~~~~--~~~~~~~~~~~i~~~~~~p~~~~ 454 (563)
++|++.... .+..+.+|...|.+++|+|+ +.+|++++.|+.|++||+.+.. ....+..|...|.+++|+|....
T Consensus 82 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 161 (379)
T 3jrp_A 82 LIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIE 161 (379)
T ss_dssp EEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC--
T ss_pred EEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccc
Confidence 999998886 77888899999999999999 9999999999999999998773 34456789999999999994210
Q ss_pred CCC----CCCcEEEEEEeCCCeEEEEeCCCCe----EEEEecCCCCCEEEEEEcCC---CCEEEEEeCCCcEEEEecCCC
Q 008496 455 TNN----PNQQLILASASFDSTVKLWDVELGK----LLYSLNGHREPVYSLAFSPT---GEYLASGSLDKSMHIWSLKEG 523 (563)
Q Consensus 455 ~~~----~~~~~~l~s~s~dg~i~iwd~~~~~----~~~~~~~h~~~i~~l~~spd---g~~lasgs~dg~v~iw~~~~~ 523 (563)
... ..+..+|++|+.||.|++||++.+. .+..+.+|..+|++++|+|+ +.+|++|+.||.|+|||+.++
T Consensus 162 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~ 241 (379)
T 3jrp_A 162 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNE 241 (379)
T ss_dssp --------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred ccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCC
Confidence 000 0011278999999999999997653 55678899999999999999 899999999999999999887
Q ss_pred e---eEEEEe---cCCCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496 524 K---IVKTYT---GNGGIFEVCWNKEGDKIAACFANHTVCVLDFR 562 (563)
Q Consensus 524 ~---~~~~~~---~~~~i~~l~w~~~g~~la~~~~~~~v~v~~~~ 562 (563)
. ....+. ....|.+++|+|+|++|++++.||.|.||+++
T Consensus 242 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~ 286 (379)
T 3jrp_A 242 QGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 286 (379)
T ss_dssp TSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEE
T ss_pred CccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCC
Confidence 4 222222 34679999999999999999999999999986
No 101
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=2.9e-33 Score=279.63 Aligned_cols=272 Identities=15% Similarity=0.230 Sum_probs=216.3
Q ss_pred cCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEE-EEeeCCCcEEEEECCCCcee
Q 008496 272 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYL-LTGSCDKTAIVWDVKTEEWK 350 (563)
Q Consensus 272 ~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l-~s~s~D~~v~iwd~~~~~~~ 350 (563)
.+...|++++|+|+|++|++|+.+| ++||+.+..... ...+...+..+.|.++++.+ ++++.|++|++||+.+++.+
T Consensus 17 ~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~ 94 (355)
T 3vu4_A 17 HVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHI-MSQEMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDV 94 (355)
T ss_dssp --CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEE-EEEECSCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEE
T ss_pred cCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCccee-eeeecCCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEE
Confidence 4567899999999999999998775 789997754322 22222357788889888887 57888999999999999988
Q ss_pred EEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCC-cceeeecCCCcceeEEEECCCCCEEEE--EeCCCcEEEEeC
Q 008496 351 QQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGEN-RPIKTFAGHQGEVNCVKWDPTGSLLAS--CSDDVTAKIWNM 427 (563)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~-~~~~~~~~h~~~i~~~~~~~~~~~las--~s~dg~i~iwd~ 427 (563)
..+. +..++.++.+..+..+++ .++.|++|++... +.+..+.. ....+++++ .+++. |+.||.|++||+
T Consensus 95 ~~~~-~~~~v~~v~~~~~~~~~~--~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~sg~~~g~v~iwd~ 166 (355)
T 3vu4_A 95 SRIK-VDAPVKDLFLSREFIVVS--YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSNEFNLGQIHITKL 166 (355)
T ss_dssp EEEE-CSSCEEEEEECSSEEEEE--ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEESSCTTCEEEEEC
T ss_pred EEEE-CCCceEEEEEcCCEEEEE--EcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEEEeCCCcCcEEEEEEC
Confidence 8776 455788888876654443 4789999999887 66666554 444556666 56665 688999999999
Q ss_pred CCCc----------------eeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCe-EEEEeCCCCeEEEEec-C
Q 008496 428 KQDK----------------YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDST-VKLWDVELGKLLYSLN-G 489 (563)
Q Consensus 428 ~~~~----------------~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~-i~iwd~~~~~~~~~~~-~ 489 (563)
.++. .+..+.+|...|++++|+|++. +|++|+.||+ |+|||+++++++..+. +
T Consensus 167 ~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~---------~l~s~s~d~~~v~iwd~~~~~~~~~~~~g 237 (355)
T 3vu4_A 167 QSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSD---------MVATCSQDGTIIRVFKTEDGVLVREFRRG 237 (355)
T ss_dssp CC------------------CCEEECCCSSCEEEEEECTTSS---------EEEEEETTCSEEEEEETTTCCEEEEEECT
T ss_pred CCCCccccccccccccccCcccEEEEccCCceEEEEECCCCC---------EEEEEeCCCCEEEEEECCCCcEEEEEEcC
Confidence 8765 2677899999999999999885 8999999998 9999999999999998 5
Q ss_pred -CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEE--E------------------E--ec--CCCEEEEEEcCCC
Q 008496 490 -HREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVK--T------------------Y--TG--NGGIFEVCWNKEG 544 (563)
Q Consensus 490 -h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~--~------------------~--~~--~~~i~~l~w~~~g 544 (563)
|..+|++++|+|||++|++|+.|++|+|||+.++...+ . + .. ......++|+++|
T Consensus 238 ~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~ 317 (355)
T 3vu4_A 238 LDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISES 317 (355)
T ss_dssp TCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSS
T ss_pred CCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCC
Confidence 99999999999999999999999999999997653111 0 0 00 1123568999999
Q ss_pred CEEEEEECCCeEEEEEee
Q 008496 545 DKIAACFANHTVCVLDFR 562 (563)
Q Consensus 545 ~~la~~~~~~~v~v~~~~ 562 (563)
+.|+++..||.+.+|+++
T Consensus 318 ~~l~~~~~dg~~~~~~~~ 335 (355)
T 3vu4_A 318 SLVVVWPHTRMIETFKVV 335 (355)
T ss_dssp EEEEEETTTTEEEEEEEE
T ss_pred CEEEEEeCCCeEEEEEEE
Confidence 999999999999999875
No 102
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.1e-35 Score=296.33 Aligned_cols=239 Identities=19% Similarity=0.274 Sum_probs=198.9
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEEcCC---ceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCcee
Q 008496 274 SKDVTTLDWNGEGTLLATGSYDGQARIWSTNG---DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWK 350 (563)
Q Consensus 274 ~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~---~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~ 350 (563)
...|++++|+|+|++|++|+.||.|++|+... .....+.+|..+|++++|+|++++|++++.|++|++||+.++..
T Consensus 11 ~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~- 89 (377)
T 3dwl_C 11 PKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGT- 89 (377)
T ss_dssp SSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------C-
T ss_pred CCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCc-
Confidence 45799999999999999999999999999875 45667889999999999999999999999999999999876530
Q ss_pred EEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCC
Q 008496 351 QQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD 430 (563)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~ 430 (563)
..+...+.+|...|.+++|+|++++|++|+.|+.|++||++++
T Consensus 90 -------------------------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 132 (377)
T 3dwl_C 90 -------------------------------------WKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQE 132 (377)
T ss_dssp -------------------------------------CCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC---
T ss_pred -------------------------------------eeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCc
Confidence 1123456678999999999999999999999999999999987
Q ss_pred c---eeeeecc-cCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCC------------------CCeEEEEec
Q 008496 431 K---YVHDLRE-HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE------------------LGKLLYSLN 488 (563)
Q Consensus 431 ~---~~~~~~~-~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~------------------~~~~~~~~~ 488 (563)
. ....+.. |...|++++|+|++. +|++++.|+.|++||+. .++++..+
T Consensus 133 ~~~~~~~~~~~~h~~~v~~~~~~~~~~---------~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 202 (377)
T 3dwl_C 133 NDWWVSKHLKRPLRSTILSLDWHPNNV---------LLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY- 202 (377)
T ss_dssp --CCCCEEECSSCCSCEEEEEECTTSS---------EEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-
T ss_pred ccceeeeEeecccCCCeEEEEEcCCCC---------EEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-
Confidence 6 3667777 999999999999875 79999999999999985 35667777
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCee----EEEEecC-CCEEEEEEcCCCCEEEEEECCCeEEEEEe
Q 008496 489 GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKI----VKTYTGN-GGIFEVCWNKEGDKIAACFANHTVCVLDF 561 (563)
Q Consensus 489 ~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~----~~~~~~~-~~i~~l~w~~~g~~la~~~~~~~v~v~~~ 561 (563)
+|..+|++++|+|+|++||+|+.||.|++||+.+++. +..+..+ ..|.+++|+|+|++|++|+.++ +.+|+.
T Consensus 203 ~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~-~~~~~~ 279 (377)
T 3dwl_C 203 PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYS-PILLQG 279 (377)
T ss_dssp CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSS-EEEECC
T ss_pred cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCc-EEEEEe
Confidence 8999999999999999999999999999999999876 5666554 4699999999999999987665 447764
No 103
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.4e-33 Score=284.98 Aligned_cols=253 Identities=20% Similarity=0.292 Sum_probs=201.1
Q ss_pred cCCCCceEEEEECC-CCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEE
Q 008496 212 EGHTSEVCACAWSP-AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLA 290 (563)
Q Consensus 212 ~~h~~~V~~~~~sp-~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~ 290 (563)
.+|...|.+++|+| ++.+|++|+.|+.|++||+.+.. . ..... ...+...|++++|+|++++|+
T Consensus 115 ~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-----------~---~~~~~-~~~~~~~v~~~~~~~~~~~l~ 179 (383)
T 3ei3_B 115 MGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSV-----------I---QVFAK-TDSWDYWYCCVDVSVSRQMLA 179 (383)
T ss_dssp CSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCE-----------E---EEEEC-CCCSSCCEEEEEEETTTTEEE
T ss_pred CCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCc-----------e---EEEec-cCCCCCCeEEEEECCCCCEEE
Confidence 47999999999999 68999999999999999986421 1 11111 122346799999999999999
Q ss_pred EEeCCCeEEEEEcCCceeEeeccCCCCEEEEEeCCCCC-EEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCCc
Q 008496 291 TGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGD-YLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV 369 (563)
Q Consensus 291 sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (563)
+|+.||.|++|+..+.....+..|...|.+++|+|++. +|++|+.|++|++||+++....
T Consensus 180 ~~~~d~~i~i~d~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~------------------- 240 (383)
T 3ei3_B 180 TGDSTGRLLLLGLDGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDK------------------- 240 (383)
T ss_dssp EEETTSEEEEEETTSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCST-------------------
T ss_pred EECCCCCEEEEECCCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcc-------------------
Confidence 99999999999999888889999999999999999999 8999999999999999764210
Q ss_pred eEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECC-CCCEEEEEeCCCcEEEEeCCCCceeeeecccC-------C
Q 008496 370 SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP-TGSLLASCSDDVTAKIWNMKQDKYVHDLREHS-------K 441 (563)
Q Consensus 370 ~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~-~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~-------~ 441 (563)
...+..+ +|...|.+++|+| ++++|++++.|+.|++||++++.....+..|. .
T Consensus 241 ------------------~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 301 (383)
T 3ei3_B 241 ------------------NSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLT 301 (383)
T ss_dssp ------------------TCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSC
T ss_pred ------------------cceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccccccccccccc
Confidence 1112223 5888999999999 99999999999999999999887766665443 2
Q ss_pred CEEEEEEccCCCC---CCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecC--CCCCEEEEEEcCCCCEEEEEeCCCcEE
Q 008496 442 EIYTIRWSPTGSG---TNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG--HREPVYSLAFSPTGEYLASGSLDKSMH 516 (563)
Q Consensus 442 ~i~~~~~~p~~~~---~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--h~~~i~~l~~spdg~~lasgs~dg~v~ 516 (563)
.+. +.|+|++.. ...|+.. + +|+.||.|+|||+.+++++..+.+ |...+..++|+|+|++||+|+ ||.|+
T Consensus 302 ~~~-~~~~p~~~~~~~~~s~dg~-~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~ 376 (383)
T 3ei3_B 302 PIK-ATWHPMYDLIVAGRYPDDQ-L--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNIL 376 (383)
T ss_dssp CCC-CEECSSSSEEEEECBCCTT-T--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEE
T ss_pred ceE-EeccCCCCceEEEecCCcc-c--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEE
Confidence 222 344443320 0011111 1 677999999999999999999987 457788889999999999998 99999
Q ss_pred EEecCC
Q 008496 517 IWSLKE 522 (563)
Q Consensus 517 iw~~~~ 522 (563)
||++.+
T Consensus 377 iw~~~~ 382 (383)
T 3ei3_B 377 IWNRED 382 (383)
T ss_dssp EEECC-
T ss_pred EEecCC
Confidence 999874
No 104
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=7.9e-34 Score=288.90 Aligned_cols=275 Identities=17% Similarity=0.252 Sum_probs=233.1
Q ss_pred eEEEEECCCCCEEE-EEeCCCeEEEEEcCCc-----eeEeeccCCCCEEEEEeCC-CCCEEEEeeCCCcEEEEECCCC--
Q 008496 277 VTTLDWNGEGTLLA-TGSYDGQARIWSTNGD-----LKCTLSKHKGPIFSLKWNK-KGDYLLTGSCDKTAIVWDVKTE-- 347 (563)
Q Consensus 277 V~~l~~s~~g~~l~-sg~~dg~i~vw~~~~~-----~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~D~~v~iwd~~~~-- 347 (563)
...++++|+...++ +|+.||.|+||+.... ....+.+|.++|++++|+| ++++|++|+.|++|++||+.++
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~ 116 (402)
T 2aq5_A 37 SGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGL 116 (402)
T ss_dssp SCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCC
T ss_pred CCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCC
Confidence 44578888765444 5789999999997542 3345788999999999999 9999999999999999999887
Q ss_pred -----ceeEEeeecccCeEEEecCCC--ceEEEEeCCCeEEEEEcCCCcceeee--cCCCcceeEEEECCCCCEEEEEeC
Q 008496 348 -----EWKQQFEFHSGPTLDVDWRNN--VSFATSSTDNMIYVCKIGENRPIKTF--AGHQGEVNCVKWDPTGSLLASCSD 418 (563)
Q Consensus 348 -----~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~d~~i~~~~~~~~~~~~~~--~~h~~~i~~~~~~~~~~~las~s~ 418 (563)
.....+..|...+.++.|.++ ..+++++.|+.|++|++...+++..+ .+|.+.|.+++|+|++++|++++.
T Consensus 117 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 196 (402)
T 2aq5_A 117 VLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCR 196 (402)
T ss_dssp SSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEET
T ss_pred ccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEec
Confidence 556778889999999999876 47899999999999999999999999 899999999999999999999999
Q ss_pred CCcEEEEeCCCCceeeee-cccCCC-EEEEEEccCCCCCCCCCCcEEEEEE---eCCCeEEEEeCCCCeE-EEEe-cCCC
Q 008496 419 DVTAKIWNMKQDKYVHDL-REHSKE-IYTIRWSPTGSGTNNPNQQLILASA---SFDSTVKLWDVELGKL-LYSL-NGHR 491 (563)
Q Consensus 419 dg~i~iwd~~~~~~~~~~-~~~~~~-i~~~~~~p~~~~~~~~~~~~~l~s~---s~dg~i~iwd~~~~~~-~~~~-~~h~ 491 (563)
|+.|++||+++++.+..+ ..|... +.++.|+|++. +|++| +.|+.|++||+++++. +... ..|.
T Consensus 197 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 267 (402)
T 2aq5_A 197 DKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGK---------ILTTGFSRMSERQVALWDTKHLEEPLSLQELDTS 267 (402)
T ss_dssp TSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTE---------EEEEEECTTCCEEEEEEETTBCSSCSEEEECCCC
T ss_pred CCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCc---------EEEEeccCCCCceEEEEcCccccCCceEEeccCC
Confidence 999999999999998888 678766 89999999864 78888 7899999999987654 2222 2467
Q ss_pred CCEEEEEEcCCCCEEEE-EeCCCcEEEEecCCCe----eEEEEecCCCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496 492 EPVYSLAFSPTGEYLAS-GSLDKSMHIWSLKEGK----IVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR 562 (563)
Q Consensus 492 ~~i~~l~~spdg~~las-gs~dg~v~iw~~~~~~----~~~~~~~~~~i~~l~w~~~g~~la~~~~~~~v~v~~~~ 562 (563)
..|.+++|+|++++|++ |+.||.|++|++.+++ .+..+.....|.+++|+|+|..+++ .++.+.+|++.
T Consensus 268 ~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~ 341 (402)
T 2aq5_A 268 SGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLH 341 (402)
T ss_dssp SSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEE
T ss_pred CceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEEcC
Confidence 78999999999999975 5579999999999887 3344444578999999999998775 46689999874
No 105
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=2.6e-34 Score=296.40 Aligned_cols=275 Identities=20% Similarity=0.384 Sum_probs=209.2
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCc------------eeEeeccCC------------CCEEEEEeCCCC-
Q 008496 273 KSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD------------LKCTLSKHK------------GPIFSLKWNKKG- 327 (563)
Q Consensus 273 ~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~------------~~~~~~~h~------------~~V~~l~~~~~~- 327 (563)
+...|++++|+|+|++|++|+.||.|+||+.... ....+.+|. .+|++++|+|++
T Consensus 27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~ 106 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKN 106 (447)
T ss_dssp GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCS
T ss_pred ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCC
Confidence 3568999999999999999999999999997643 366788998 889999999998
Q ss_pred -CEEEEeeCCCcEEEEECCCCceeEEe-e--ecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeee-cCCCccee
Q 008496 328 -DYLLTGSCDKTAIVWDVKTEEWKQQF-E--FHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTF-AGHQGEVN 402 (563)
Q Consensus 328 -~~l~s~s~D~~v~iwd~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~-~~h~~~i~ 402 (563)
.+|++++.|++|++||+.++...... . .+.+............+......+ +.. ...+...+ .+|...|.
T Consensus 107 ~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~h~~~v~ 181 (447)
T 3dw8_B 107 AAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMD----LMV-EASPRRIFANAHTYHIN 181 (447)
T ss_dssp SSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEE----EEE-EEEEEEEECSCCSSCCC
T ss_pred cceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchh----eee-eccceEEeccCCCcceE
Confidence 79999999999999998765433210 0 000000000000000000000000 000 11223343 68999999
Q ss_pred EEEECCCCCEEEEEeCCCcEEEEeCCC-Cceee-------eecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEE
Q 008496 403 CVKWDPTGSLLASCSDDVTAKIWNMKQ-DKYVH-------DLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVK 474 (563)
Q Consensus 403 ~~~~~~~~~~las~s~dg~i~iwd~~~-~~~~~-------~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~ 474 (563)
+++|+|++++|++| .|+.|++||+.+ ...+. .+..|...|++++|+|++. .+|++|+.||.|+
T Consensus 182 ~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~--------~~l~s~~~dg~i~ 252 (447)
T 3dw8_B 182 SISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSC--------NTFVYSSSKGTIR 252 (447)
T ss_dssp EEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCT--------TEEEEEETTSCEE
T ss_pred EEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCC--------cEEEEEeCCCeEE
Confidence 99999999999999 899999999984 43433 3668999999999999872 1799999999999
Q ss_pred EEeCCCCeE----EEEecCCCC------------CEEEEEEcCCCCEEEEEeCCCcEEEEecCC-CeeEEEEecCCC---
Q 008496 475 LWDVELGKL----LYSLNGHRE------------PVYSLAFSPTGEYLASGSLDKSMHIWSLKE-GKIVKTYTGNGG--- 534 (563)
Q Consensus 475 iwd~~~~~~----~~~~~~h~~------------~i~~l~~spdg~~lasgs~dg~v~iw~~~~-~~~~~~~~~~~~--- 534 (563)
+||+++++. +..+.+|.. +|.+++|+|+|++|++|+. +.|+|||+++ ++++..+..+..
T Consensus 253 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~ 331 (447)
T 3dw8_B 253 LCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRS 331 (447)
T ss_dssp EEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTT
T ss_pred EEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccc
Confidence 999998886 678888876 8999999999999999999 9999999997 888877776543
Q ss_pred -------------EEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496 535 -------------IFEVCWNKEGDKIAACFANHTVCVLDFR 562 (563)
Q Consensus 535 -------------i~~l~w~~~g~~la~~~~~~~v~v~~~~ 562 (563)
++.++|+|+|++|++|+.|+.|.|||++
T Consensus 332 ~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~ 372 (447)
T 3dw8_B 332 KLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRN 372 (447)
T ss_dssp THHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETT
T ss_pred cccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcC
Confidence 3449999999999999999999999975
No 106
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=3.3e-33 Score=279.74 Aligned_cols=276 Identities=19% Similarity=0.333 Sum_probs=228.6
Q ss_pred cCCCCeEEEEECCC---CCEEEEEeCCCeEEEEEcCC--cee-EeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECC
Q 008496 272 EKSKDVTTLDWNGE---GTLLATGSYDGQARIWSTNG--DLK-CTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVK 345 (563)
Q Consensus 272 ~~~~~V~~l~~s~~---g~~l~sg~~dg~i~vw~~~~--~~~-~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~ 345 (563)
.|...|++++|+|+ |++|++|+.||.|++|+... ... ..+.+|..+|++++|+|++++|++++.|++|++||+.
T Consensus 37 ~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~ 116 (368)
T 3mmy_A 37 SPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLS 116 (368)
T ss_dssp CCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred CCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcC
Confidence 45678999999999 69999999999999999863 333 6788999999999999999999999999999999999
Q ss_pred CCceeEEeeecccCeEEEec--CCC-ceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcE
Q 008496 346 TEEWKQQFEFHSGPTLDVDW--RNN-VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTA 422 (563)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i 422 (563)
++.... +..|..++.++.| ..+ ..+++++.|+.|++|++...+++..+..|. .+.++.+. ...+++++.++.+
T Consensus 117 ~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~i 192 (368)
T 3mmy_A 117 SNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVI--YPMAVVATAERGL 192 (368)
T ss_dssp TTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEEE--TTEEEEEEGGGCE
T ss_pred CCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEec--CCeeEEEeCCCcE
Confidence 988766 5568889999998 544 568899999999999999999888888765 55566665 4578899999999
Q ss_pred EEEeCCCCceeeee--cccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC---eEEEEecCCCC-----
Q 008496 423 KIWNMKQDKYVHDL--REHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG---KLLYSLNGHRE----- 492 (563)
Q Consensus 423 ~iwd~~~~~~~~~~--~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~---~~~~~~~~h~~----- 492 (563)
++|++......... ..+...+.++.+.+.... ....+++++.||.|++||++.. ..+..+.+|..
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (368)
T 3mmy_A 193 IVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQN-----KPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNT 267 (368)
T ss_dssp EEEECSSSCEEEEECCCSCSSCEEEEEEEECTTS-----CEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----
T ss_pred EEEEeccccchhhhccccccCCCceEEEcccCCC-----CCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccc
Confidence 99999876543222 123344556665554321 1234899999999999999887 55677777766
Q ss_pred -------CEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEec-CCCEEEEEEcCCCCEEEEEECCCeE
Q 008496 493 -------PVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG-NGGIFEVCWNKEGDKIAACFANHTV 556 (563)
Q Consensus 493 -------~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~-~~~i~~l~w~~~g~~la~~~~~~~v 556 (563)
+|++++|+|++++|++|+.||.|+|||+.+++++..+.. ...|.+++|+|+|++||+|+.++..
T Consensus 268 ~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~ 339 (368)
T 3mmy_A 268 SAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWS 339 (368)
T ss_dssp CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCST
T ss_pred cccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEeccccc
Confidence 799999999999999999999999999999999988876 5679999999999999999988743
No 107
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=8.1e-33 Score=274.25 Aligned_cols=248 Identities=19% Similarity=0.365 Sum_probs=215.6
Q ss_pred EeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCC----ceeEEeeecccCeEEEecCC---CceEEEEeCCCeEE
Q 008496 309 CTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE----EWKQQFEFHSGPTLDVDWRN---NVSFATSSTDNMIY 381 (563)
Q Consensus 309 ~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~----~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~d~~i~ 381 (563)
..+.+|.++|++++|+|++++|++|+.||+|++||+.++ .....+..|..++.++.|.+ ...+++++.|+.|+
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~ 84 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK 84 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence 456799999999999999999999999999999999876 45666778999999999976 67889999999999
Q ss_pred EEEcCCC---------cceeeecCCCcceeEEEECCC--CCEEEEEeCCCcEEEEeCCCCceeeeec-------------
Q 008496 382 VCKIGEN---------RPIKTFAGHQGEVNCVKWDPT--GSLLASCSDDVTAKIWNMKQDKYVHDLR------------- 437 (563)
Q Consensus 382 ~~~~~~~---------~~~~~~~~h~~~i~~~~~~~~--~~~las~s~dg~i~iwd~~~~~~~~~~~------------- 437 (563)
+|++... +++..+.+|.+.|.+++|+|+ +.+|++++.||.|++||+++++.+..+.
T Consensus 85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 164 (351)
T 3f3f_A 85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPA 164 (351)
T ss_dssp EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCS
T ss_pred EEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccC
Confidence 9999876 557888899999999999999 9999999999999999998877554332
Q ss_pred ccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeE--EEEecCCCCCEEEEEEcCCC----CEEEEEeC
Q 008496 438 EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL--LYSLNGHREPVYSLAFSPTG----EYLASGSL 511 (563)
Q Consensus 438 ~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~h~~~i~~l~~spdg----~~lasgs~ 511 (563)
.|...+.++.|+|+... ..++++++.|+.+.+|+...++. +..+.+|..+|++++|+|++ ++|++|+.
T Consensus 165 ~~~~~~~~~~~~p~~~~------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~ 238 (351)
T 3f3f_A 165 NHLQSDFCLSWCPSRFS------PEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCK 238 (351)
T ss_dssp SCSCCCEEEEECCCSSS------CCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEET
T ss_pred CcccceeEEEeccCCCC------CcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcC
Confidence 57788999999997211 12789999999999998887765 67788999999999999998 89999999
Q ss_pred CCcEEEEecCCC----------------------------------------------eeEEEEec-CCCEEEEEEcCCC
Q 008496 512 DKSMHIWSLKEG----------------------------------------------KIVKTYTG-NGGIFEVCWNKEG 544 (563)
Q Consensus 512 dg~v~iw~~~~~----------------------------------------------~~~~~~~~-~~~i~~l~w~~~g 544 (563)
||.|++||+.++ +++..+.+ ...|.+++|+|+|
T Consensus 239 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~ 318 (351)
T 3f3f_A 239 DGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTG 318 (351)
T ss_dssp TSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSS
T ss_pred CCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCC
Confidence 999999999875 45555554 4579999999999
Q ss_pred CEEEEEECCCeEEEEEee
Q 008496 545 DKIAACFANHTVCVLDFR 562 (563)
Q Consensus 545 ~~la~~~~~~~v~v~~~~ 562 (563)
++||+|+.|+.|.|||+.
T Consensus 319 ~~l~s~~~dg~v~iw~~~ 336 (351)
T 3f3f_A 319 TILSSAGDDGKVRLWKAT 336 (351)
T ss_dssp CCEEEEETTSCEEEEEEC
T ss_pred CEEEEecCCCcEEEEecC
Confidence 999999999999999985
No 108
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=1.2e-33 Score=287.52 Aligned_cols=286 Identities=18% Similarity=0.307 Sum_probs=234.3
Q ss_pred ceEEEEECCCCC-EEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECC-CCCEEEEEeC
Q 008496 217 EVCACAWSPAGS-LLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG-EGTLLATGSY 294 (563)
Q Consensus 217 ~V~~~~~sp~~~-~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~-~g~~l~sg~~ 294 (563)
....|+++|+.. ++++|+.||.|+||++....... ........|...|++++|+| ++++|++|+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~-------------~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~ 102 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVD-------------KNVPLVCGHTAPVLDIAWCPHNDNVIASGSE 102 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECC-------------TTCCCBCCCSSCEEEEEECTTCTTEEEEEET
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCC-------------CCCceEecCCCCEEEEEeCCCCCCEEEEEeC
Confidence 345689999865 55678999999999986432110 00011234567899999999 9999999999
Q ss_pred CCeEEEEEcCC--------ceeEeeccCCCCEEEEEeCCCC-CEEEEeeCCCcEEEEECCCCceeEEe--eecccCeEEE
Q 008496 295 DGQARIWSTNG--------DLKCTLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTEEWKQQF--EFHSGPTLDV 363 (563)
Q Consensus 295 dg~i~vw~~~~--------~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~D~~v~iwd~~~~~~~~~~--~~~~~~~~~~ 363 (563)
||.|++|+... .....+.+|...|.+++|+|++ ++|++++.|++|++||+.+++....+ ..|...+.++
T Consensus 103 dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~ 182 (402)
T 2aq5_A 103 DCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSV 182 (402)
T ss_dssp TSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEE
T ss_pred CCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEE
Confidence 99999999764 3456788999999999999998 69999999999999999999988888 6788899999
Q ss_pred ecCC-CceEEEEeCCCeEEEEEcCCCcceeee-cCCCcc-eeEEEECCCCCEEEEE---eCCCcEEEEeCCCCce-eeee
Q 008496 364 DWRN-NVSFATSSTDNMIYVCKIGENRPIKTF-AGHQGE-VNCVKWDPTGSLLASC---SDDVTAKIWNMKQDKY-VHDL 436 (563)
Q Consensus 364 ~~~~-~~~~~~~~~d~~i~~~~~~~~~~~~~~-~~h~~~-i~~~~~~~~~~~las~---s~dg~i~iwd~~~~~~-~~~~ 436 (563)
.|.. ...+++++.|+.|++|++.....+..+ .+|.+. +.++.|+|++++|++| +.|+.|++||+++... +...
T Consensus 183 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~ 262 (402)
T 2aq5_A 183 DWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQ 262 (402)
T ss_dssp EECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEE
T ss_pred EECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEE
Confidence 9975 457889999999999999999988888 788876 8999999999999999 7999999999988654 2222
Q ss_pred -cccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeE-EEEecC--CCCCEEEEEEcCCCCEEEEEeCC
Q 008496 437 -REHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL-LYSLNG--HREPVYSLAFSPTGEYLASGSLD 512 (563)
Q Consensus 437 -~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~--h~~~i~~l~~spdg~~lasgs~d 512 (563)
..|...+.+++|+|++. .++++|+.||.|++||+.+++. +..+.. |..+|.+++|+|++.++++ .+
T Consensus 263 ~~~~~~~v~~~~~s~~~~--------~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~ 332 (402)
T 2aq5_A 263 ELDTSSGVLLPFFDPDTN--------IVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KC 332 (402)
T ss_dssp ECCCCSSCEEEEEETTTT--------EEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GT
T ss_pred eccCCCceeEEEEcCCCC--------EEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cc
Confidence 24677899999999875 3445677899999999998773 334333 5689999999999999875 56
Q ss_pred CcEEEEecCCCee
Q 008496 513 KSMHIWSLKEGKI 525 (563)
Q Consensus 513 g~v~iw~~~~~~~ 525 (563)
+.+++|++.++++
T Consensus 333 ~~~~~~~l~~~~~ 345 (402)
T 2aq5_A 333 EIARFYKLHERKC 345 (402)
T ss_dssp EEEEEEEEETTEE
T ss_pred eeEEEEEcCCCcE
Confidence 6999999988764
No 109
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=4.7e-33 Score=285.70 Aligned_cols=260 Identities=24% Similarity=0.500 Sum_probs=214.5
Q ss_pred eEecCCCCceEEEEECCC-CCEEEEeeCCCcEEEEecCCCCCcCCC--CCCCceEEEEEeeecccccCCCCeEEEEECCC
Q 008496 209 TILEGHTSEVCACAWSPA-GSLLASGSGDSTARIWTIADGTSNGGA--QNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE 285 (563)
Q Consensus 209 ~~l~~h~~~V~~~~~sp~-~~~latgs~D~~i~iW~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~ 285 (563)
..+.+|.+.|++++|+|+ +.+||+|+.||.|++|++......... ...+. ..+ ..+...|++++|+|+
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~-----~~~----~~h~~~v~~l~~~~~ 192 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPD-----LRL----RGHQKEGYGLSWNPN 192 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCS-----EEE----ECCSSCCCCEEECTT
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCc-----EEe----cCCCCCeEEEEeCCC
Confidence 445689999999999997 789999999999999999753211110 01111 111 234567999999999
Q ss_pred CC-EEEEEeCCCeEEEEEcCCc--------eeEeeccCCCCEEEEEeCC-CCCEEEEeeCCCcEEEEECCCCceeEEeee
Q 008496 286 GT-LLATGSYDGQARIWSTNGD--------LKCTLSKHKGPIFSLKWNK-KGDYLLTGSCDKTAIVWDVKTEEWKQQFEF 355 (563)
Q Consensus 286 g~-~l~sg~~dg~i~vw~~~~~--------~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~ 355 (563)
+. +|++|+.||.|++|+.... ....+.+|...|.+++|+| ++..|++++.|+.|++||++++..
T Consensus 193 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~------ 266 (430)
T 2xyi_A 193 LNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNT------ 266 (430)
T ss_dssp STTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCS------
T ss_pred CCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCC------
Confidence 98 9999999999999998651 1345678999999999999 678899999999999999986521
Q ss_pred cccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCC-EEEEEeCCCcEEEEeCCC-Ccee
Q 008496 356 HSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGS-LLASCSDDVTAKIWNMKQ-DKYV 433 (563)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~-~las~s~dg~i~iwd~~~-~~~~ 433 (563)
.+++..+.+|...|++++|+|+++ +|++|+.||.|++||+++ ..++
T Consensus 267 --------------------------------~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~ 314 (430)
T 2xyi_A 267 --------------------------------SKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKL 314 (430)
T ss_dssp --------------------------------SSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCS
T ss_pred --------------------------------CcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCe
Confidence 123345567889999999999987 689999999999999997 5667
Q ss_pred eeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC--------------CeEEEEecCCCCCEEEEEE
Q 008496 434 HDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL--------------GKLLYSLNGHREPVYSLAF 499 (563)
Q Consensus 434 ~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~--------------~~~~~~~~~h~~~i~~l~~ 499 (563)
..+..|...|++++|+|++. .+|++++.||.|+|||+.. .+++..+.+|...|++++|
T Consensus 315 ~~~~~h~~~v~~i~~sp~~~--------~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 386 (430)
T 2xyi_A 315 HSFESHKDEIFQVQWSPHNE--------TILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSW 386 (430)
T ss_dssp EEEECCSSCEEEEEECSSCT--------TEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEE
T ss_pred EEeecCCCCEEEEEECCCCC--------CEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEE
Confidence 88889999999999999874 2789999999999999986 3678888999999999999
Q ss_pred cCCCC-EEEEEeCCCcEEEEecCCC
Q 008496 500 SPTGE-YLASGSLDKSMHIWSLKEG 523 (563)
Q Consensus 500 spdg~-~lasgs~dg~v~iw~~~~~ 523 (563)
+|+++ +|++++.||.|+||++.+.
T Consensus 387 ~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 387 NPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp CSSSTTEEEEEETTSEEEEEEECHH
T ss_pred CCCCCCEEEEEECCCCEEEeEcccc
Confidence 99999 8999999999999998754
No 110
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.6e-34 Score=312.76 Aligned_cols=254 Identities=25% Similarity=0.405 Sum_probs=208.8
Q ss_pred eEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCC--C
Q 008496 209 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE--G 286 (563)
Q Consensus 209 ~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~--g 286 (563)
.++.+|.+.|++++|+|++++|++|+.||+|+||++.++.. .....+ ..|...|++++|+++ +
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~-----------~~~~~l----~~h~~~V~~l~~s~~~~~ 67 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-----------KLIDTL----TGHEGPVWRVDWAHPKFG 67 (753)
T ss_dssp -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEE-----------EEEEEE----CCCSSCEEEEEECCTTSC
T ss_pred eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCC-----------ccceec----cCCcCceEEEEecCCCCC
Confidence 46789999999999999999999999999999999863210 111222 245678999999988 9
Q ss_pred CEEEEEeCCCeEEEEEcCCc---eeEeeccCCCCEEEEEeCCC--CCEEEEeeCCCcEEEEECCCCceeEEeeecccCeE
Q 008496 287 TLLATGSYDGQARIWSTNGD---LKCTLSKHKGPIFSLKWNKK--GDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTL 361 (563)
Q Consensus 287 ~~l~sg~~dg~i~vw~~~~~---~~~~~~~h~~~V~~l~~~~~--~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~ 361 (563)
++|++|+.||.|++|+.... ....+..|..+|++++|+|+ ++.|++|+.||+|++||++++...
T Consensus 68 ~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~----------- 136 (753)
T 3jro_A 68 TILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTT----------- 136 (753)
T ss_dssp SEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCC-----------
T ss_pred CEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCc-----------
Confidence 99999999999999998654 55677889999999999999 999999999999999999765321
Q ss_pred EEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECC-------------CCCEEEEEeCCCcEEEEeCC
Q 008496 362 DVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP-------------TGSLLASCSDDVTAKIWNMK 428 (563)
Q Consensus 362 ~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~-------------~~~~las~s~dg~i~iwd~~ 428 (563)
....+.+|...|.+++|+| ++.+|++|+.||+|++||++
T Consensus 137 ----------------------------~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~ 188 (753)
T 3jro_A 137 ----------------------------SPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYN 188 (753)
T ss_dssp ----------------------------CCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEE
T ss_pred ----------------------------ceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEecc
Confidence 1123456888899999999 58999999999999999998
Q ss_pred CC----ceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe-----EEEEecCCCCCEEEEEE
Q 008496 429 QD----KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK-----LLYSLNGHREPVYSLAF 499 (563)
Q Consensus 429 ~~----~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~-----~~~~~~~h~~~i~~l~~ 499 (563)
++ .....+..|...|++++|+|++. ...+|++|+.||.|++||+.++. .+.....|..+|++++|
T Consensus 189 ~~~~~~~~~~~~~~h~~~V~~l~~sp~~~------~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~ 262 (753)
T 3jro_A 189 SDAQTYVLESTLEGHSDWVRDVAWSPTVL------LRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASW 262 (753)
T ss_dssp TTTTEEEEEEEECCCSSCEEEEEECCCCS------SSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEE
T ss_pred CCcccceeeeeecCCCCcEEEEEeccCCC------CCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEE
Confidence 76 45667889999999999999820 01379999999999999998764 33344568889999999
Q ss_pred cCCCCEEEEEeCCCcEEEEecCC
Q 008496 500 SPTGEYLASGSLDKSMHIWSLKE 522 (563)
Q Consensus 500 spdg~~lasgs~dg~v~iw~~~~ 522 (563)
+|+|++|++|+.||.|+||++..
T Consensus 263 spdg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 263 SLSGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp CTTTCCEEEECSSSCEECCBCCS
T ss_pred cCCCCEEEEEcCCCEEEEEecCC
Confidence 99999999999999999999874
No 111
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.8e-32 Score=272.04 Aligned_cols=240 Identities=21% Similarity=0.350 Sum_probs=212.9
Q ss_pred cCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCcee
Q 008496 272 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWK 350 (563)
Q Consensus 272 ~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~ 350 (563)
.|...|++++|+|+|++|++|+.||.|++|+.. +.....+.+|..+|++++|+|++++|++++.|++|++||+.+++..
T Consensus 30 ~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 109 (369)
T 3zwl_B 30 GHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCV 109 (369)
T ss_dssp CCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEE
T ss_pred EeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE
Confidence 356789999999999999999999999999965 5677788999999999999999999999999999999999876543
Q ss_pred EEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCC-----CcEEEE
Q 008496 351 QQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDD-----VTAKIW 425 (563)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~d-----g~i~iw 425 (563)
.. +. |...|.+++|+|++++|++++.+ +.|++|
T Consensus 110 ~~-----------------------------------------~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~ 147 (369)
T 3zwl_B 110 AT-----------------------------------------WK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIY 147 (369)
T ss_dssp EE-----------------------------------------EE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEE
T ss_pred EE-----------------------------------------ee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEE
Confidence 32 22 55678899999999999999999 999999
Q ss_pred eCCCCc-----------eeeeecccCC--CEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC-CeEEEEecCCC
Q 008496 426 NMKQDK-----------YVHDLREHSK--EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL-GKLLYSLNGHR 491 (563)
Q Consensus 426 d~~~~~-----------~~~~~~~~~~--~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~h~ 491 (563)
|+.... .+..+..|.. .+.+++|+|++. +|++++.||.|++||+++ ++.+..+..|.
T Consensus 148 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 218 (369)
T 3zwl_B 148 EIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGK---------YIIAGHKDGKISKYDVSNNYEYVDSIDLHE 218 (369)
T ss_dssp EEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGC---------EEEEEETTSEEEEEETTTTTEEEEEEECCS
T ss_pred EecCCccceeecccccceeeeccCCcCccceeEEEEcCCCC---------EEEEEcCCCEEEEEECCCCcEeEEEEecCC
Confidence 987653 2334445555 899999999875 789999999999999998 78889999999
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEecCCCEEEEEEcCCCCEEEEEECCC--------------eEE
Q 008496 492 EPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANH--------------TVC 557 (563)
Q Consensus 492 ~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~g~~la~~~~~~--------------~v~ 557 (563)
.+|.+++|+|++++|++++.||.|++||+.+++.+..+.....+..++|+|+|+.++++..++ .+.
T Consensus 219 ~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~ 298 (369)
T 3zwl_B 219 KSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEAR 298 (369)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECCC-------------CEEE
T ss_pred CceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeecCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeE
Confidence 999999999999999999999999999999999999999888999999999999999999888 788
Q ss_pred EEEee
Q 008496 558 VLDFR 562 (563)
Q Consensus 558 v~~~~ 562 (563)
+||++
T Consensus 299 ~~d~~ 303 (369)
T 3zwl_B 299 FYHKI 303 (369)
T ss_dssp EEETT
T ss_pred EEecC
Confidence 88764
No 112
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=4.1e-32 Score=278.83 Aligned_cols=277 Identities=13% Similarity=0.109 Sum_probs=237.8
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEEcC-CceeE-----eeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCc
Q 008496 275 KDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKC-----TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE 348 (563)
Q Consensus 275 ~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~-~~~~~-----~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~ 348 (563)
..+.+++|+|++.++++++.++.|++|+.. +.... .+.+|.+.|.+++|+|++..+++++.|+.|++||+.+++
T Consensus 123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~ 202 (433)
T 3bws_A 123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLA 202 (433)
T ss_dssp SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCC
T ss_pred CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCce
Confidence 346689999988888888889999999987 44444 345789999999999999999999999999999999999
Q ss_pred eeEEeeecccCeEEEecCCCc--eEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEe--------C
Q 008496 349 WKQQFEFHSGPTLDVDWRNNV--SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS--------D 418 (563)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s--------~ 418 (563)
....+..+...+..+.|.++. .+++++.++.|++|++...+.+..+..+ ..+.+++|+|++++|++++ .
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~ 281 (433)
T 3bws_A 203 YKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLLSKDGKELYIAQFSASNQESG 281 (433)
T ss_dssp EEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEECTTSSEEEEEEEESCTTCSC
T ss_pred EEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEEcCCCCEEEEEECCCCccccC
Confidence 888888888888888887543 3456668999999999988888777664 4589999999999999888 5
Q ss_pred CCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEE
Q 008496 419 DVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLA 498 (563)
Q Consensus 419 dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~ 498 (563)
|+.|++||+.+++.+..+ .|...+.+++|+|++. .++++++.|+.|++||+.+++.+..+. +...+.+++
T Consensus 282 dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~--------~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~ 351 (433)
T 3bws_A 282 GGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTEN--------KIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIA 351 (433)
T ss_dssp CEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTT--------EEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEE
T ss_pred CCeEEEEECCCCcEEeec-cCCCCcceEEECCCCC--------EEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEE
Confidence 899999999988776654 4566889999999874 467888999999999999999888776 667899999
Q ss_pred EcCCCCEEEEEeC---------------CCcEEEEecCCCeeEEEEecCCCEEEEEEcCCCCEEEEEEC-CCeEEEEEee
Q 008496 499 FSPTGEYLASGSL---------------DKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFA-NHTVCVLDFR 562 (563)
Q Consensus 499 ~spdg~~lasgs~---------------dg~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~g~~la~~~~-~~~v~v~~~~ 562 (563)
|+|+|++|++++. ||.|++||+.+++++..+.....+..++|+|+|+.|+++.. ++.|.||++.
T Consensus 352 ~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 352 LSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGNQPTGLDVSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp ECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECSSSEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred EcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCCCCCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence 9999999988876 57999999999999999988888999999999999998875 9999999975
No 113
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.2e-34 Score=282.70 Aligned_cols=263 Identities=10% Similarity=0.061 Sum_probs=204.2
Q ss_pred EECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeCCCeEEEE
Q 008496 222 AWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIW 301 (563)
Q Consensus 222 ~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw 301 (563)
.+.+++.+|++|+.||+|++||+.++.... .+. ...|.++.|+|+ +++|+.|+.|++|
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~----------~~~---------~~~v~~~~~~~~---~~s~s~D~~i~~w 100 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTIT----------TIT---------TPNPRTGGEHPA---IISRGPCNRLLLL 100 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEE----------EEE---------EECCCTTCCCCS---EEEECSTTEEEEE
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEE----------EEe---------cCCceeeeeCCc---eEEecCCCeEEEE
Confidence 455688899999999999999998654311 111 134677788888 9999999999999
Q ss_pred EcCCce----------eE-eeccCCCCEEEEEeCC--CCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCC
Q 008496 302 STNGDL----------KC-TLSKHKGPIFSLKWNK--KGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNN 368 (563)
Q Consensus 302 ~~~~~~----------~~-~~~~h~~~V~~l~~~~--~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (563)
+..+.. .. ....|.++|.+++|+| ++++|++|+.|++|++||+++++....+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~--------------- 165 (343)
T 3lrv_A 101 YPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVH--------------- 165 (343)
T ss_dssp ETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEE---------------
T ss_pred EccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEE---------------
Confidence 876432 22 2236778999999999 9999999999999999999877542211
Q ss_pred ceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCcee-eeecc-cCCCEEEE
Q 008496 369 VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYV-HDLRE-HSKEIYTI 446 (563)
Q Consensus 369 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~-~~~~~-~~~~i~~~ 446 (563)
...|...|++++|+|++.+||+|+.||.|++||+++++.+ ..+.. |...|+++
T Consensus 166 -------------------------~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l 220 (343)
T 3lrv_A 166 -------------------------SAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEV 220 (343)
T ss_dssp -------------------------CCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEE
T ss_pred -------------------------ecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEE
Confidence 0124556899999999999999999999999999999887 77887 99999999
Q ss_pred EEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecC---CCCCEE--EEEEcCCCCEEEEEeC-CCcEEEEec
Q 008496 447 RWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG---HREPVY--SLAFSPTGEYLASGSL-DKSMHIWSL 520 (563)
Q Consensus 447 ~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---h~~~i~--~l~~spdg~~lasgs~-dg~v~iw~~ 520 (563)
+|+|++. +|++++ |+.|++||+++++.+..+.. |..++. +++|+|+|++|++|+. |+.|+||++
T Consensus 221 ~fs~~g~---------~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~ 290 (343)
T 3lrv_A 221 KFADNGY---------WMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKF 290 (343)
T ss_dssp EECTTSS---------EEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred EEeCCCC---------EEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEE
Confidence 9999875 788888 55999999998876554443 444444 6999999999999998 999999999
Q ss_pred CCCeeEEEEecCCCEEEEEEcC---CCCEEEEEECCCeEEEE
Q 008496 521 KEGKIVKTYTGNGGIFEVCWNK---EGDKIAACFANHTVCVL 559 (563)
Q Consensus 521 ~~~~~~~~~~~~~~i~~l~w~~---~g~~la~~~~~~~v~v~ 559 (563)
.++...... ..+..++|++ +++.|++++.|+.+.++
T Consensus 291 ~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~ 329 (343)
T 3lrv_A 291 DKKTKNWTK---DEESALCLQSDTADFTDMDVVCGDGGIAAI 329 (343)
T ss_dssp CTTTCSEEE---EEEEECCC----CCCCEEEEEEETTEEEEE
T ss_pred cccccceEe---cCceeEecCccccccceeEEEecCCceEEE
Confidence 765432222 4467788988 88899988888888765
No 114
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=2.3e-33 Score=280.82 Aligned_cols=266 Identities=20% Similarity=0.332 Sum_probs=210.4
Q ss_pred CCCceEEEEECCC----CCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECC-CCCE
Q 008496 214 HTSEVCACAWSPA----GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG-EGTL 288 (563)
Q Consensus 214 h~~~V~~~~~sp~----~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~-~g~~ 288 (563)
|...|++++|+|+ +.+|++|+.||.|++|++.++.. +..+ ..+...|++++|+| ++.+
T Consensus 68 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~-------------~~~~----~~~~~~i~~~~~~~~~~~~ 130 (366)
T 3k26_A 68 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQC-------------IKHY----VGHGNAINELKFHPRDPNL 130 (366)
T ss_dssp TTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCE-------------EEEE----ESCCSCEEEEEECSSCTTE
T ss_pred CCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceE-------------eeee----cCCCCcEEEEEECCCCCCE
Confidence 6688999999999 67999999999999999876431 1112 23467899999999 9999
Q ss_pred EEEEeCCCeEEEEEcC-CceeEee---ccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEe
Q 008496 289 LATGSYDGQARIWSTN-GDLKCTL---SKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVD 364 (563)
Q Consensus 289 l~sg~~dg~i~vw~~~-~~~~~~~---~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~ 364 (563)
|++|+.||.|++|+.. +.....+ ..|...|.+++|+|++++|++++.|+.|++||+++++....+.... .
T Consensus 131 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------~ 204 (366)
T 3k26_A 131 LLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESY------D 204 (366)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHH------T
T ss_pred EEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeE------E
Confidence 9999999999999986 4455555 6899999999999999999999999999999998876544332210 0
Q ss_pred cCCCce-EEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCce-----------
Q 008496 365 WRNNVS-FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY----------- 432 (563)
Q Consensus 365 ~~~~~~-~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~----------- 432 (563)
+..+.. +.... . . ..........+|...|.+++|+ +++|++++.|+.|++||+.+...
T Consensus 205 ~~~~~~~~~~~~----~---~-~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~ 274 (366)
T 3k26_A 205 YNPNKTNRPFIS----Q---K-IHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESN 274 (366)
T ss_dssp CCGGGCSSCCCC----E---E-ECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCC
T ss_pred ecCCCCcccccc----e---e-eccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcc
Confidence 100000 00000 0 0 0112234556799999999998 77999999999999999887643
Q ss_pred ---eeeecccCCCEEEEEEccC--CCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe----EEEEecCC--CCCEEEEEEcC
Q 008496 433 ---VHDLREHSKEIYTIRWSPT--GSGTNNPNQQLILASASFDSTVKLWDVELGK----LLYSLNGH--REPVYSLAFSP 501 (563)
Q Consensus 433 ---~~~~~~~~~~i~~~~~~p~--~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~----~~~~~~~h--~~~i~~l~~sp 501 (563)
+..+..|...|++++|+|+ +. +|++|+.||.|++||+..++ ....+.+| ..+|++++|+|
T Consensus 275 ~~~~~~~~~~~~~v~~~~~s~~~~~~---------~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 345 (366)
T 3k26_A 275 VTILGRFDYSQCDIWYMRFSMDFWQK---------MLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSR 345 (366)
T ss_dssp EEEEEEEECSSCCSSCCCCEECTTSS---------EEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECT
T ss_pred hheeccccccCCcEEEEEEcCCCCCc---------EEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCC
Confidence 6677788889999999998 54 79999999999999999875 45577777 78999999999
Q ss_pred CCCEEEEEeCCCcEEEEecC
Q 008496 502 TGEYLASGSLDKSMHIWSLK 521 (563)
Q Consensus 502 dg~~lasgs~dg~v~iw~~~ 521 (563)
++++|++|+.||.|+|||+.
T Consensus 346 ~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 346 DSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp TSSEEEEEETTSEEEEEEC-
T ss_pred CCCeEEEEeCCCEEEEEEec
Confidence 99999999999999999985
No 115
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=9.2e-33 Score=275.94 Aligned_cols=277 Identities=12% Similarity=0.151 Sum_probs=210.2
Q ss_pred eEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCE
Q 008496 209 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL 288 (563)
Q Consensus 209 ~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~ 288 (563)
..+.+|...|++++|+|+|++||+|+.|+ ++||++..+.. ..... ...+..++|.++++.
T Consensus 13 ~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~-----------~~~~~--------~~~~~~~~~~~~~~~ 72 (355)
T 3vu4_A 13 VPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAH-----------IMSQE--------MRHLSKVRMLHRTNY 72 (355)
T ss_dssp ------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEE-----------EEEEE--------CSCCCEEEECTTSSE
T ss_pred cccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcce-----------eeeee--------cCCeEEEEEcCCCCE
Confidence 34578999999999999999999998775 78999764221 11111 124778889998887
Q ss_pred E-EEEeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCC-ceeEEeeecccCeEEEec
Q 008496 289 L-ATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE-EWKQQFEFHSGPTLDVDW 365 (563)
Q Consensus 289 l-~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~-~~~~~~~~~~~~~~~~~~ 365 (563)
+ ++|+.|+.|++||.. +.....+. |..+|.+++|+++. ++++ .|+.|++||+.++ +.+..+.. ...+..+.+
T Consensus 73 ~~~~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~-~~~~~~~s~ 147 (355)
T 3vu4_A 73 VAFVTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR-FGGVCEFSN 147 (355)
T ss_dssp EEEECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE-EEEEEEEET
T ss_pred EEEEECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc-CCceEEEEc
Confidence 7 567888999999975 45555554 67799999999864 4433 4889999999887 55555544 222333443
Q ss_pred CCCceEEE--EeCCCeEEEEEcCCCc---------------c-eeeecCCCcceeEEEECCCCCEEEEEeCCCc-EEEEe
Q 008496 366 RNNVSFAT--SSTDNMIYVCKIGENR---------------P-IKTFAGHQGEVNCVKWDPTGSLLASCSDDVT-AKIWN 426 (563)
Q Consensus 366 ~~~~~~~~--~~~d~~i~~~~~~~~~---------------~-~~~~~~h~~~i~~~~~~~~~~~las~s~dg~-i~iwd 426 (563)
..++. ++.++.|++|++.... | +..+.+|.+.|++++|+|++++||+|+.|++ |+|||
T Consensus 148 ---~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd 224 (355)
T 3vu4_A 148 ---GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFK 224 (355)
T ss_dssp ---TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEE
T ss_pred ---cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEE
Confidence 34444 5789999999998754 3 7889999999999999999999999999998 99999
Q ss_pred CCCCceeeeec-c-cCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeE--EEEec--------------
Q 008496 427 MKQDKYVHDLR-E-HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL--LYSLN-------------- 488 (563)
Q Consensus 427 ~~~~~~~~~~~-~-~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~-------------- 488 (563)
+++++++..+. + |...|++++|+|++. +|++++.|++|+|||++.+.. ...+.
T Consensus 225 ~~~~~~~~~~~~g~h~~~v~~~~~s~~~~---------~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (355)
T 3vu4_A 225 TEDGVLVREFRRGLDRADVVDMKWSTDGS---------KLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSL 295 (355)
T ss_dssp TTTCCEEEEEECTTCCSCEEEEEECTTSC---------EEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCS
T ss_pred CCCCcEEEEEEcCCCCCcEEEEEECCCCC---------EEEEEECCCEEEEEEccCCCCcccccccceeeccccccccce
Confidence 99999999998 5 999999999999885 799999999999999975421 11111
Q ss_pred -------CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 008496 489 -------GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKE 522 (563)
Q Consensus 489 -------~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~ 522 (563)
.+..+...++|+|||++|++++.||.+++|++..
T Consensus 296 ~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~ 336 (355)
T 3vu4_A 296 CNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVF 336 (355)
T ss_dssp EEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEE
T ss_pred eEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEc
Confidence 1122346799999999999999999999999754
No 116
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=2.3e-32 Score=280.60 Aligned_cols=246 Identities=24% Similarity=0.448 Sum_probs=213.7
Q ss_pred EeeccCCCCEEEEEeCCC-CCEEEEeeCCCcEEEEECCC----------CceeEEeeecccCeEEEecCCCc--eEEEEe
Q 008496 309 CTLSKHKGPIFSLKWNKK-GDYLLTGSCDKTAIVWDVKT----------EEWKQQFEFHSGPTLDVDWRNNV--SFATSS 375 (563)
Q Consensus 309 ~~~~~h~~~V~~l~~~~~-~~~l~s~s~D~~v~iwd~~~----------~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 375 (563)
.....|.++|++++|+|+ +.+|++++.||.|++||+.+ ......+..|...+.++.|.... .+++++
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 201 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS 201 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence 345679999999999997 67899999999999999976 56667788899999999997653 689999
Q ss_pred CCCeEEEEEcCCCc-------ceeeecCCCcceeEEEECC-CCCEEEEEeCCCcEEEEeCCCC---ceeeeecccCCCEE
Q 008496 376 TDNMIYVCKIGENR-------PIKTFAGHQGEVNCVKWDP-TGSLLASCSDDVTAKIWNMKQD---KYVHDLREHSKEIY 444 (563)
Q Consensus 376 ~d~~i~~~~~~~~~-------~~~~~~~h~~~i~~~~~~~-~~~~las~s~dg~i~iwd~~~~---~~~~~~~~~~~~i~ 444 (563)
.|+.|++|++.... +...+.+|...|.+++|+| ++.+|++|+.|+.|++||+++. ..+..+..|...|.
T Consensus 202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~ 281 (430)
T 2xyi_A 202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN 281 (430)
T ss_dssp TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEE
T ss_pred CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeE
Confidence 99999999998732 2466779999999999999 6789999999999999999977 56777889999999
Q ss_pred EEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC-CeEEEEecCCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEecCC
Q 008496 445 TIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL-GKLLYSLNGHREPVYSLAFSPTGE-YLASGSLDKSMHIWSLKE 522 (563)
Q Consensus 445 ~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~h~~~i~~l~~spdg~-~lasgs~dg~v~iw~~~~ 522 (563)
+++|+|++. .+|++|+.||.|++||++. +..+..+.+|..+|++++|+|+++ +|++|+.||.|+|||+..
T Consensus 282 ~i~~~p~~~--------~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~ 353 (430)
T 2xyi_A 282 CLSFNPYSE--------FILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 353 (430)
T ss_dssp EEEECSSCT--------TEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGG
T ss_pred EEEeCCCCC--------CEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCC
Confidence 999999764 3789999999999999997 567888889999999999999995 699999999999999986
Q ss_pred --------------CeeEEEEecC-CCEEEEEEcCCCC-EEEEEECCCeEEEEEee
Q 008496 523 --------------GKIVKTYTGN-GGIFEVCWNKEGD-KIAACFANHTVCVLDFR 562 (563)
Q Consensus 523 --------------~~~~~~~~~~-~~i~~l~w~~~g~-~la~~~~~~~v~v~~~~ 562 (563)
..++..+.++ ..|.+++|+|+++ .|++++.|+.|.||+++
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~ 409 (430)
T 2xyi_A 354 IGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMA 409 (430)
T ss_dssp TTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred CccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcc
Confidence 2556666554 4699999999999 89999999999999985
No 117
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.3e-33 Score=303.11 Aligned_cols=251 Identities=25% Similarity=0.432 Sum_probs=209.4
Q ss_pred cCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcC---CceeEeeccCCCCEEEEEeCCC--CCEEEEeeCCCcEEEEECCC
Q 008496 272 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTN---GDLKCTLSKHKGPIFSLKWNKK--GDYLLTGSCDKTAIVWDVKT 346 (563)
Q Consensus 272 ~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~---~~~~~~~~~h~~~V~~l~~~~~--~~~l~s~s~D~~v~iwd~~~ 346 (563)
.|...|++++|+|+|++|++|+.||.|+||+.. +.....+.+|.++|++++|+|+ +++|++|+.||+|++||+.+
T Consensus 7 gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~ 86 (753)
T 3jro_A 7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEEN 86 (753)
T ss_dssp -CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEET
T ss_pred cCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCC
Confidence 457889999999999999999999999999975 3455678899999999999988 99999999999999999876
Q ss_pred CceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCC--CCEEEEEeCCCcEEE
Q 008496 347 EEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT--GSLLASCSDDVTAKI 424 (563)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~--~~~las~s~dg~i~i 424 (563)
+... .+..+.+|...|.+++|+|+ ++++++|+.||.|++
T Consensus 87 ~~~~---------------------------------------~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~v 127 (753)
T 3jro_A 87 GRWS---------------------------------------QIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSV 127 (753)
T ss_dssp TEEE---------------------------------------EEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEE
T ss_pred Cccc---------------------------------------ccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEE
Confidence 5321 23445678999999999999 999999999999999
Q ss_pred EeCCCCc--eeeeecccCCCEEEEEEccCCCCC-----CCCCCcEEEEEEeCCCeEEEEeCCCC----eEEEEecCCCCC
Q 008496 425 WNMKQDK--YVHDLREHSKEIYTIRWSPTGSGT-----NNPNQQLILASASFDSTVKLWDVELG----KLLYSLNGHREP 493 (563)
Q Consensus 425 wd~~~~~--~~~~~~~~~~~i~~~~~~p~~~~~-----~~~~~~~~l~s~s~dg~i~iwd~~~~----~~~~~~~~h~~~ 493 (563)
||++++. ....+..|...|.++.|+|..... ..+ +..+|++|+.||.|++||++++ .++..+.+|..+
T Consensus 128 wdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~-d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~ 206 (753)
T 3jro_A 128 VEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTK-ESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDW 206 (753)
T ss_dssp EECCSSSCCCCEEEECCSSCEEEEEECCCC---------CG-GGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSC
T ss_pred EEeecCCCcceeEeecCCCceEEEEecCcccccccccccCC-CCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCc
Confidence 9998773 345567899999999999952100 000 1126899999999999999876 667788899999
Q ss_pred EEEEEEcCC---CCEEEEEeCCCcEEEEecCCCee-----E-EEEecCCCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496 494 VYSLAFSPT---GEYLASGSLDKSMHIWSLKEGKI-----V-KTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR 562 (563)
Q Consensus 494 i~~l~~spd---g~~lasgs~dg~v~iw~~~~~~~-----~-~~~~~~~~i~~l~w~~~g~~la~~~~~~~v~v~~~~ 562 (563)
|++++|+|+ +.+|++|+.||.|++||+.++.. + ......+.|++++|+|+|+.|++|+.||.|.|||++
T Consensus 207 V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~ 284 (753)
T 3jro_A 207 VRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (753)
T ss_dssp EEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCC
T ss_pred EEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecC
Confidence 999999999 99999999999999999988631 1 111234568899999999999999999999999975
No 118
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=1.6e-32 Score=278.16 Aligned_cols=242 Identities=14% Similarity=0.124 Sum_probs=180.5
Q ss_pred EEEEECCCCCEEEEEeCCCeEEEEEcCCce------eEeeccCCCCEEEEEeCC--------CCCEEEEeeCCCcEEEEE
Q 008496 278 TTLDWNGEGTLLATGSYDGQARIWSTNGDL------KCTLSKHKGPIFSLKWNK--------KGDYLLTGSCDKTAIVWD 343 (563)
Q Consensus 278 ~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~------~~~~~~h~~~V~~l~~~~--------~~~~l~s~s~D~~v~iwd 343 (563)
....+++++.+|++|+.|++|+||+..... ...+.+|.+.|.+++|+| ++++|+||+.|++|+|||
T Consensus 93 ~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd 172 (393)
T 4gq1_A 93 NVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWR 172 (393)
T ss_dssp ----CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEE
T ss_pred ceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEE
Confidence 334445567889999999999999976532 234679999999999998 789999999999999999
Q ss_pred CCCCceeEEeeecccCeEEEecCCC--ceEEEEeCCCeEEEEEcCCCccee-------------------------eecC
Q 008496 344 VKTEEWKQQFEFHSGPTLDVDWRNN--VSFATSSTDNMIYVCKIGENRPIK-------------------------TFAG 396 (563)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~d~~i~~~~~~~~~~~~-------------------------~~~~ 396 (563)
+.++.....+..|..++.++.|.++ ..+++++.|++|++|++...+... ...+
T Consensus 173 ~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 252 (393)
T 4gq1_A 173 LTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSG 252 (393)
T ss_dssp EETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------C
T ss_pred CCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeeccc
Confidence 9988888888888899999999765 368999999999999997654322 1246
Q ss_pred CCcceeEEEEC-CCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCC-----------CCCCCCcEEE
Q 008496 397 HQGEVNCVKWD-PTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSG-----------TNNPNQQLIL 464 (563)
Q Consensus 397 h~~~i~~~~~~-~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~-----------~~~~~~~~~l 464 (563)
|...+.++.|+ |+++.|++++.|+++++||+..+.....+..|...+..+.+.|+... ...+....++
T Consensus 253 ~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (393)
T 4gq1_A 253 IASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFA 332 (393)
T ss_dssp CSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEE
T ss_pred ccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEE
Confidence 77889999986 89999999999999999999988877777777777777766665321 0112345678
Q ss_pred EEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 008496 465 ASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSL 520 (563)
Q Consensus 465 ~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~ 520 (563)
++|+.||+|+|||+.+++++..+.+|..+|.+++|||||++||+++.+| +.+|.+
T Consensus 333 ~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 333 TAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp EEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred EEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence 8999999999999999988888888999999999999999999999877 556654
No 119
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.7e-33 Score=282.74 Aligned_cols=258 Identities=14% Similarity=0.084 Sum_probs=211.6
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEe
Q 008496 274 SKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF 353 (563)
Q Consensus 274 ~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~ 353 (563)
...|.+++|+|||+++|+++.|++|+ + +.....+.+|...|++++|+|+| .++++.+|+....... .+
T Consensus 15 ~~~v~sv~~SpDG~~iASas~D~TV~--d--~~~~~~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~~~~-~~ 82 (588)
T 2j04_A 15 EDWKNNLTWARDGTLYLTTFPDISIG--Q--PKYAKDINCNSKNLFHVKEFPLE-------FENKLDFELAQQNGLL-NS 82 (588)
T ss_dssp SSSSCCEEECTTSCEEEECSSSEEEE--E--ECCCSCCSSBGGGTEEEEEECCC-------CCCTTTTSCCCSSCSS-TT
T ss_pred hccEEEEEECCCCCEEEEEcCCceee--c--ccccceecCCCccEEEEEECCCC-------CcceEEEEeCCCceEe-ec
Confidence 46799999999999999999999999 5 44444568999999999999999 5777777765433222 11
Q ss_pred eecccCeEEEecCCC-ceEEEEeCCCeEEEEEcCCCcceeeecCCCc-----ceeEEEECCCCCEEEEEeCCCcEEEEeC
Q 008496 354 EFHSGPTLDVDWRNN-VSFATSSTDNMIYVCKIGENRPIKTFAGHQG-----EVNCVKWDPTGSLLASCSDDVTAKIWNM 427 (563)
Q Consensus 354 ~~~~~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~-----~i~~~~~~~~~~~las~s~dg~i~iwd~ 427 (563)
.+...+.++.|.++ ..+|+++.||.+++|+... .+..+. |.. .+.+++|||||++||+|+.||+|+|||+
T Consensus 83 -~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~ 158 (588)
T 2j04_A 83 -QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSI 158 (588)
T ss_dssp -SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEEC
T ss_pred -CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEEC
Confidence 33677999999765 4589999999999999544 556666 665 4999999999999999999999999999
Q ss_pred CCCce-------eeee----cccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeE---EEEe-cCCCC
Q 008496 428 KQDKY-------VHDL----REHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL---LYSL-NGHRE 492 (563)
Q Consensus 428 ~~~~~-------~~~~----~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~---~~~~-~~h~~ 492 (563)
.++.. +.++ .+|...|.+++|+|+| +++++.|++|++||+..+.. ..++ .+|..
T Consensus 159 ~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-----------Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~ 227 (588)
T 2j04_A 159 RKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV-----------LVAALSNNSVFSMTVSASSHQPVSRMIQNASRR 227 (588)
T ss_dssp CCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE-----------EEEEETTCCEEEECCCSSSSCCCEEEEECCCSS
T ss_pred CCCccccccceeeeeeecccccccccEEEEEEcCCc-----------EEEEeCCCeEEEEECCCCccccceeeecccccC
Confidence 98753 5665 5677899999999963 67889999999999987763 3566 47889
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeE-EEEecCCCEEEEEE--cCCCCEEEEEECCCeEEEEEee
Q 008496 493 PVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIV-KTYTGNGGIFEVCW--NKEGDKIAACFANHTVCVLDFR 562 (563)
Q Consensus 493 ~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~-~~~~~~~~i~~l~w--~~~g~~la~~~~~~~v~v~~~~ 562 (563)
.|.+++|+ |++||+++ +++|++||+.+++.. ..+.....+++++| +|+|+.|++++.+|+ .||.++
T Consensus 228 ~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 228 KITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp CCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred cEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence 99999999 68999997 699999999988873 33344567899999 999999999999999 898763
No 120
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.98 E-value=1.8e-31 Score=265.47 Aligned_cols=235 Identities=9% Similarity=0.055 Sum_probs=192.8
Q ss_pred EECCCCCEEEEEeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccC
Q 008496 281 DWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGP 359 (563)
Q Consensus 281 ~~s~~g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~ 359 (563)
.+.+++.+|++|+.||.|++|+.. +.....+. ..+|.++.|+|. +++++.|++|++|+...
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~------------- 104 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGN------------- 104 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTT-------------
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccC-------------
Confidence 345678899999999999999975 44444554 567888889998 99999999999999754
Q ss_pred eEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeec-CCCcceeEEEECC--CCCEEEEEeCCCcEEEEeCCCCceeeee
Q 008496 360 TLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFA-GHQGEVNCVKWDP--TGSLLASCSDDVTAKIWNMKQDKYVHDL 436 (563)
Q Consensus 360 ~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~-~h~~~i~~~~~~~--~~~~las~s~dg~i~iwd~~~~~~~~~~ 436 (563)
.+.+|+......+..+. +|.+.|.+++|+| ++++|++|+.||+|++||+++++.+..+
T Consensus 105 -------------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~ 165 (343)
T 3lrv_A 105 -------------------QITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVH 165 (343)
T ss_dssp -------------------EEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEE
T ss_pred -------------------ceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEE
Confidence 24456666655444444 7788999999999 9999999999999999999999886655
Q ss_pred c-ccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEE-EEecC-CCCCEEEEEEcCCCCEEEEEeCCC
Q 008496 437 R-EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLL-YSLNG-HREPVYSLAFSPTGEYLASGSLDK 513 (563)
Q Consensus 437 ~-~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~-~~~~~-h~~~i~~l~~spdg~~lasgs~dg 513 (563)
. .|...+.+++|+|++. +|++|+.||.|+|||+++++.+ ..+.. |..+|++++|+|+|.+|++|+ |+
T Consensus 166 ~~~~~~~i~~~~~~pdg~---------~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~ 235 (343)
T 3lrv_A 166 SAKSDVEYSSGVLHKDSL---------LLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQ 235 (343)
T ss_dssp CCCSSCCCCEEEECTTSC---------EEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SS
T ss_pred ecCCCCceEEEEECCCCC---------EEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CC
Confidence 3 3455899999999875 8999999999999999999887 78887 999999999999999999999 55
Q ss_pred cEEEEecCCCeeEEEEec---C-CCE--EEEEEcCCCCEEEEEEC-CCeEEEEEee
Q 008496 514 SMHIWSLKEGKIVKTYTG---N-GGI--FEVCWNKEGDKIAACFA-NHTVCVLDFR 562 (563)
Q Consensus 514 ~v~iw~~~~~~~~~~~~~---~-~~i--~~l~w~~~g~~la~~~~-~~~v~v~~~~ 562 (563)
.|++||+++++.+..+.. + ..+ ..++|+|+|++||+|+. ++.+.||++.
T Consensus 236 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~ 291 (343)
T 3lrv_A 236 TVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFD 291 (343)
T ss_dssp BEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred eEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEc
Confidence 999999998876544332 1 112 36999999999999988 9999999874
No 121
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.98 E-value=3.9e-30 Score=265.67 Aligned_cols=237 Identities=14% Similarity=0.126 Sum_probs=199.3
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEEcC-Cc---eeEeec--------------------------------------
Q 008496 275 KDVTTLDWNGEGTLLATGSYDGQARIWSTN-GD---LKCTLS-------------------------------------- 312 (563)
Q Consensus 275 ~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~-~~---~~~~~~-------------------------------------- 312 (563)
.++++++|+++|++|+++ .++.|++|+.. |. ....+.
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 468899999999966655 57899999954 44 333332
Q ss_pred ----------------cCCCCEEEEEeCCCCCEE-EEeeCCCcEEEEECC--CCceeEEeeecccCeEEEecCCCceEEE
Q 008496 313 ----------------KHKGPIFSLKWNKKGDYL-LTGSCDKTAIVWDVK--TEEWKQQFEFHSGPTLDVDWRNNVSFAT 373 (563)
Q Consensus 313 ----------------~h~~~V~~l~~~~~~~~l-~s~s~D~~v~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (563)
.|.+.|++++|+|++++| ++|+.|++|++||+. ++.....+..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~------------------ 145 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKR------------------ 145 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEE------------------
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeec------------------
Confidence 344479999999999996 889999999999987 5544332211
Q ss_pred EeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceee----eecccCCCEEEEEEc
Q 008496 374 SSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVH----DLREHSKEIYTIRWS 449 (563)
Q Consensus 374 ~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~----~~~~~~~~i~~~~~~ 449 (563)
.+|...|++++|+|++++|++|+.||.+++|++.+..... .+.+|...|++++|+
T Consensus 146 ---------------------~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 204 (450)
T 2vdu_B 146 ---------------------FCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLI 204 (450)
T ss_dssp ---------------------EECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEE
T ss_pred ---------------------ccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEc
Confidence 1356789999999999999999999999999998776544 778899999999999
Q ss_pred cC---CCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEE-ecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCee
Q 008496 450 PT---GSGTNNPNQQLILASASFDSTVKLWDVELGKLLYS-LNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKI 525 (563)
Q Consensus 450 p~---~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~-~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~ 525 (563)
|+ +. +|++|+.|+.|++||+.+++++.. +.+|..+|++++|+ +|++|++|+.|+.|++||+.++++
T Consensus 205 p~~~~~~---------~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~ 274 (450)
T 2vdu_B 205 KDSDGHQ---------FIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKN 274 (450)
T ss_dssp ECTTSCE---------EEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCE
T ss_pred CCCCCCc---------EEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcE
Confidence 98 53 799999999999999999988877 66899999999999 999999999999999999999998
Q ss_pred EEEEec--------------------------CCCEEEEEEcCCCCEEEEEE-CCCeEEEEEe
Q 008496 526 VKTYTG--------------------------NGGIFEVCWNKEGDKIAACF-ANHTVCVLDF 561 (563)
Q Consensus 526 ~~~~~~--------------------------~~~i~~l~w~~~g~~la~~~-~~~~v~v~~~ 561 (563)
+..+.. ...|..++|+|+|+.|++++ .++.|.||++
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 275 LSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp EEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred eeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence 888752 23588999999999999998 8999999998
No 122
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.98 E-value=1.4e-28 Score=248.80 Aligned_cols=273 Identities=12% Similarity=0.138 Sum_probs=219.7
Q ss_pred CEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEE-EEEeCCCeEEEEEcC-C
Q 008496 228 SLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLL-ATGSYDGQARIWSTN-G 305 (563)
Q Consensus 228 ~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l-~sg~~dg~i~vw~~~-~ 305 (563)
.++++++.|+.|++||+.++.. +..... ...+.+++|+|+|+++ ++++.|+.|++|+.. +
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~-------------~~~~~~-----~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~ 64 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKV-------------TATIPV-----GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATN 64 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEE-------------EEEEEC-----SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTT
T ss_pred EEEEEcCCCCEEEEEECCCCeE-------------EEEeec-----CCCcceEEECCCCCEEEEECCCCCeEEEEECCCC
Confidence 4688899999999999876531 111111 2458999999999976 677799999999975 4
Q ss_pred ceeEeeccCCCCEEEEEeCCCCCEEE-EeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCCc--eEEEEeCCCeEEE
Q 008496 306 DLKCTLSKHKGPIFSLKWNKKGDYLL-TGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV--SFATSSTDNMIYV 382 (563)
Q Consensus 306 ~~~~~~~~h~~~V~~l~~~~~~~~l~-s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~i~~ 382 (563)
+....+..+. .+.+++|+|++++|+ +++.|+.|++||+.+++....+..+. .+..+.|..+. .+++++.++.|++
T Consensus 65 ~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~v~~ 142 (391)
T 1l0q_A 65 NVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGK-SPLGLALSPDGKKLYVTNNGDKTVSV 142 (391)
T ss_dssp EEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred eEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCC-CcceEEECCCCCEEEEEeCCCCEEEE
Confidence 5555555544 899999999999885 45567999999999998877766543 56788887554 3467788999999
Q ss_pred EEcCCCcceeeecCCCcceeEEEECCCCCEE-EEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCc
Q 008496 383 CKIGENRPIKTFAGHQGEVNCVKWDPTGSLL-ASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQ 461 (563)
Q Consensus 383 ~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l-as~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~ 461 (563)
|++.+.+.+..+..|. .+.+++|+|+++.| ++++.|+.|++||+++++.+..+. +...+.+++|+|++.
T Consensus 143 ~d~~~~~~~~~~~~~~-~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~-------- 212 (391)
T 1l0q_A 143 INTVTKAVINTVSVGR-SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGT-------- 212 (391)
T ss_dssp EETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSS--------
T ss_pred EECCCCcEEEEEecCC-CcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEECCCCC--------
Confidence 9999988888887654 56899999999877 677889999999999988776665 456789999999875
Q ss_pred EEEEEEe---CCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEecCCCeeEEEEecC
Q 008496 462 LILASAS---FDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYL-ASGSLDKSMHIWSLKEGKIVKTYTGN 532 (563)
Q Consensus 462 ~~l~s~s---~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l-asgs~dg~v~iw~~~~~~~~~~~~~~ 532 (563)
.|++++ .++.|++||+.+++.+..+..|. .+.+++|+|+|++| ++++.|+.|++||+.+++++..+..+
T Consensus 213 -~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~ 285 (391)
T 1l0q_A 213 -KAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVG 285 (391)
T ss_dssp -EEEEEEECSSCCEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS
T ss_pred -EEEEEecCcCCCcEEEEECCCCeEEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECC
Confidence 455555 79999999999999988888765 47899999999987 67788999999999999998887643
No 123
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.98 E-value=1.2e-29 Score=243.08 Aligned_cols=274 Identities=14% Similarity=0.132 Sum_probs=189.4
Q ss_pred CCeEEEEECCCCC---EEEEEeCCCeEEEEEcC-C---ceeEeeccCCCCEEEEEeCCCCCEEEE---------------
Q 008496 275 KDVTTLDWNGEGT---LLATGSYDGQARIWSTN-G---DLKCTLSKHKGPIFSLKWNKKGDYLLT--------------- 332 (563)
Q Consensus 275 ~~V~~l~~s~~g~---~l~sg~~dg~i~vw~~~-~---~~~~~~~~h~~~V~~l~~~~~~~~l~s--------------- 332 (563)
-+|.++-|-..|- .+++++. ..|++|+.. + ++.+++..|..+|..+.+.|+...|+.
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla 118 (356)
T 2w18_A 40 VDVSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALF 118 (356)
T ss_dssp EEEEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEEC
T ss_pred EEEeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEE
Confidence 4577888877654 5666664 699999975 3 456778888887777777764322221
Q ss_pred -eeCCCcEEEEECCCCceeEEeeecccCeEEEecCCCceEEEEe---CCCeEEEEEcCC-CcceeeecCCCcceeEEEEC
Q 008496 333 -GSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSS---TDNMIYVCKIGE-NRPIKTFAGHQGEVNCVKWD 407 (563)
Q Consensus 333 -~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~~i~~~~~~~-~~~~~~~~~h~~~i~~~~~~ 407 (563)
+..|+++..|.+..+ +...+..+ ....++.++ .|+.|++|++.. ++.+..+.+|...++.++|+
T Consensus 119 ~spd~~~~~~~l~s~g--------~~~~v~~l---~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs 187 (356)
T 2w18_A 119 CSSDDESEKQVLLKSG--------NIKAVLGL---TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFA 187 (356)
T ss_dssp C------CCEEEEEEE--------EEEEEEEE---TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEE
T ss_pred ECCCccccccEEEeCC--------CeEEEEec---CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEee
Confidence 111111111111111 11111111 233444443 489999999954 66777888999999999999
Q ss_pred C---CCCEEEEEeCCCcEEEEeCCCCceeeeecccC---CCEEEEEEccCCCCC---CCCCCcEEEEEEeCCCeEEEEeC
Q 008496 408 P---TGSLLASCSDDVTAKIWNMKQDKYVHDLREHS---KEIYTIRWSPTGSGT---NNPNQQLILASASFDSTVKLWDV 478 (563)
Q Consensus 408 ~---~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~---~~i~~~~~~p~~~~~---~~~~~~~~l~s~s~dg~i~iwd~ 478 (563)
| ++.+||+||.|++|||||++++++++++.+|. ..+.+++|+|++... ..+.....+++|+.|++|++||.
T Consensus 188 ~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~ 267 (356)
T 2w18_A 188 EVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINP 267 (356)
T ss_dssp EEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEET
T ss_pred ccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEEC
Confidence 9 78999999999999999999999999998654 357778999987411 01111123588999999999999
Q ss_pred CCCeEEEEe-----cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEecCC-CE-EEEEEcCCCCEEEEEE
Q 008496 479 ELGKLLYSL-----NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG-GI-FEVCWNKEGDKIAACF 551 (563)
Q Consensus 479 ~~~~~~~~~-----~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~~-~i-~~l~w~~~g~~la~~~ 551 (563)
.+++++..+ .+|...+.+..++ +.++|+|+.|++|+|||+.+|+++.++.++. .+ ..++|+|||++||+|+
T Consensus 268 ~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS 345 (356)
T 2w18_A 268 KTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQ 345 (356)
T ss_dssp TTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEEC
T ss_pred CCCEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEE
Confidence 999987765 4777666555554 8899999999999999999999999998653 34 4689999999999999
Q ss_pred CCCeEEEEEee
Q 008496 552 ANHTVCVLDFR 562 (563)
Q Consensus 552 ~~~~v~v~~~~ 562 (563)
.|++|+|||+.
T Consensus 346 ~D~TIklWd~~ 356 (356)
T 2w18_A 346 KDGNIFVYHYS 356 (356)
T ss_dssp TTSCEEEEEEC
T ss_pred CCCcEEEecCC
Confidence 99999999974
No 124
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=1.2e-28 Score=249.33 Aligned_cols=263 Identities=13% Similarity=0.112 Sum_probs=221.7
Q ss_pred CEEEEEeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEE-EEeeCCCcEEEEECCCCceeEEeeecccCeEEEe
Q 008496 287 TLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYL-LTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVD 364 (563)
Q Consensus 287 ~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l-~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~ 364 (563)
.++++++.|+.|++|+.. ++....+..|. .+.+++|+|+++++ ++++.|++|++||+.+++....+..+. .+..+.
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~ 80 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVA 80 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEE
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceE
Confidence 468889999999999986 45555666664 58999999999987 677799999999999999888777655 778888
Q ss_pred cCCCce-E-EEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEE-EEEeCCCcEEEEeCCCCceeeeecccCC
Q 008496 365 WRNNVS-F-ATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLL-ASCSDDVTAKIWNMKQDKYVHDLREHSK 441 (563)
Q Consensus 365 ~~~~~~-~-~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l-as~s~dg~i~iwd~~~~~~~~~~~~~~~ 441 (563)
|.++.. + ++++.++.|++|++...+.+..+..| ..+.+++|+|+++.| ++++.|+.|++||+.+++.+..+..+ .
T Consensus 81 ~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~ 158 (391)
T 1l0q_A 81 VSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-R 158 (391)
T ss_dssp ECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-S
T ss_pred ECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-C
Confidence 876543 3 55667799999999998888777755 468999999999977 78888999999999999888777665 4
Q ss_pred CEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEe---CCCcEEEE
Q 008496 442 EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGS---LDKSMHIW 518 (563)
Q Consensus 442 ~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs---~dg~v~iw 518 (563)
.+.+++|+|++. .++++++.|+.|++||+++++.+..+. +...+.+++|+|+|++|++++ .++.|++|
T Consensus 159 ~~~~~~~~~dg~--------~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~ 229 (391)
T 1l0q_A 159 SPKGIAVTPDGT--------KVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMI 229 (391)
T ss_dssp SEEEEEECTTSS--------EEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEE
T ss_pred CcceEEECCCCC--------EEEEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEE
Confidence 569999999875 355788899999999999999887776 456789999999999999888 68999999
Q ss_pred ecCCCeeEEEEecCCCEEEEEEcCCCCEE-EEEECCCeEEEEEee
Q 008496 519 SLKEGKIVKTYTGNGGIFEVCWNKEGDKI-AACFANHTVCVLDFR 562 (563)
Q Consensus 519 ~~~~~~~~~~~~~~~~i~~l~w~~~g~~l-a~~~~~~~v~v~~~~ 562 (563)
|+.+++.+..+..+..+..++|+|+|++| +++..++.|.|||++
T Consensus 230 d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~ 274 (391)
T 1l0q_A 230 DTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFXNTVSVIDTA 274 (391)
T ss_dssp ETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred ECCCCeEEEEEecCCCccEEEEccCCCEEEEEcCCCCEEEEEECC
Confidence 99999999998888889999999999988 455779999999974
No 125
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.97 E-value=3.1e-30 Score=261.38 Aligned_cols=276 Identities=14% Similarity=0.159 Sum_probs=191.7
Q ss_pred CeEEEEEC---CCCCEEEEEeCCCeEEEEEcCCc-------e---eEeeccCCCCEEEEEeC------------------
Q 008496 276 DVTTLDWN---GEGTLLATGSYDGQARIWSTNGD-------L---KCTLSKHKGPIFSLKWN------------------ 324 (563)
Q Consensus 276 ~V~~l~~s---~~g~~l~sg~~dg~i~vw~~~~~-------~---~~~~~~h~~~V~~l~~~------------------ 324 (563)
...++.|. +++..++.++.++.|++|+.... . ......|..++..+.|+
T Consensus 17 ~p~~~~w~~~~~~~~~l~a~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (393)
T 4gq1_A 17 RPYTTTWCSQSPSCSNLLAIGHDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDGNVNS 96 (393)
T ss_dssp CEEEEEECTTSGGGTTEEEEEESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC----------
T ss_pred CCeEEEEeCCCCCCCCEEEEECCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCcceee
Confidence 45667774 34444455556888999974211 0 01112234444444443
Q ss_pred --CCCCEEEEeeCCCcEEEEECCCCceeE-----EeeecccCeEEEecC---------CCceEEEEeCCCeEEEEEcCCC
Q 008496 325 --KKGDYLLTGSCDKTAIVWDVKTEEWKQ-----QFEFHSGPTLDVDWR---------NNVSFATSSTDNMIYVCKIGEN 388 (563)
Q Consensus 325 --~~~~~l~s~s~D~~v~iwd~~~~~~~~-----~~~~~~~~~~~~~~~---------~~~~~~~~~~d~~i~~~~~~~~ 388 (563)
+++.+|++++.|++|+|||++++.... .+..|.+.+.++.|. +...+++++.|++|++|++...
T Consensus 97 ~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~ 176 (393)
T 4gq1_A 97 SPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDE 176 (393)
T ss_dssp CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETT
T ss_pred cCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCC
Confidence 455679999999999999998886543 245688999999996 3467899999999999999988
Q ss_pred cceeeecCCCcceeEEEECCCCC-EEEEEeCCCcEEEEeCCCCceeeee-------------------------cccCCC
Q 008496 389 RPIKTFAGHQGEVNCVKWDPTGS-LLASCSDDVTAKIWNMKQDKYVHDL-------------------------REHSKE 442 (563)
Q Consensus 389 ~~~~~~~~h~~~i~~~~~~~~~~-~las~s~dg~i~iwd~~~~~~~~~~-------------------------~~~~~~ 442 (563)
.++..+.+|...+.+++|+|++. +|++|+.|++|++||+++++..... .+|...
T Consensus 177 ~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 256 (393)
T 4gq1_A 177 GPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASS 256 (393)
T ss_dssp EEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSS
T ss_pred ceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeeccccccc
Confidence 88888889999999999999874 7999999999999999876543221 346667
Q ss_pred EEEEEEc-cCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcC--------------------
Q 008496 443 IYTIRWS-PTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSP-------------------- 501 (563)
Q Consensus 443 i~~~~~~-p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp-------------------- 501 (563)
+.++.|. |++. .|++++.|+++++||+..++....+..|...+..+.++|
T Consensus 257 v~~v~~~~~dg~---------~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (393)
T 4gq1_A 257 LANVRWIGSDGS---------GILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRY 327 (393)
T ss_dssp CSEEEEETTTTC---------EEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSC
T ss_pred ceeeeeecCCCC---------EEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCC
Confidence 7788876 5553 689999999999999998877776666655554444333
Q ss_pred CCCEEEEEeCCCcEEEEecCCCeeEEEE-ecCCCEEEEEEcCCCCEEEEEECCCeEEEEEe
Q 008496 502 TGEYLASGSLDKSMHIWSLKEGKIVKTY-TGNGGIFEVCWNKEGDKIAACFANHTVCVLDF 561 (563)
Q Consensus 502 dg~~lasgs~dg~v~iw~~~~~~~~~~~-~~~~~i~~l~w~~~g~~la~~~~~~~v~v~~~ 561 (563)
++.++++|+.||.|+|||+.+++.+... .....|.+++|+|||++||+++.+| +.+|.+
T Consensus 328 ~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 328 MDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp TTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred CCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence 3456788999999999999998776554 4456799999999999999998765 555543
No 126
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.97 E-value=5.3e-30 Score=245.40 Aligned_cols=187 Identities=17% Similarity=0.198 Sum_probs=140.9
Q ss_pred CCCEEEEEe--CCCeEEEEEc--CCceeEeeccCCCCEEEEEeCC---CCCEEEEeeCCCcEEEEECCCCceeEEeeecc
Q 008496 285 EGTLLATGS--YDGQARIWST--NGDLKCTLSKHKGPIFSLKWNK---KGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHS 357 (563)
Q Consensus 285 ~g~~l~sg~--~dg~i~vw~~--~~~~~~~~~~h~~~V~~l~~~~---~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~ 357 (563)
+|+++.+++ .|+.|++|+. +|+.+..+..|...+..++|++ ++..|++|+.|++|+|||+.+++++.++..+.
T Consensus 144 ~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~ 223 (356)
T 2w18_A 144 KRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDD 223 (356)
T ss_dssp TTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC
T ss_pred CCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCC
Confidence 455555543 5889999986 3566777888999999999999 77999999999999999999988777664322
Q ss_pred cCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEE------------EEEeCCCcEEEE
Q 008496 358 GPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLL------------ASCSDDVTAKIW 425 (563)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l------------as~s~dg~i~iw 425 (563)
. |...+.+++|+|+|+++ ++|+.|++|++|
T Consensus 224 ~--------------------------------------~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklW 265 (356)
T 2w18_A 224 S--------------------------------------YQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVI 265 (356)
T ss_dssp -----------------------------------------CCCEEEEEEETTEEEEEEC------------CCEEEEEE
T ss_pred c--------------------------------------ceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEE
Confidence 1 11234455666666554 788999999999
Q ss_pred eCCCCceeeee-----cccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEE-EEEE
Q 008496 426 NMKQDKYVHDL-----REHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVY-SLAF 499 (563)
Q Consensus 426 d~~~~~~~~~~-----~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~-~l~~ 499 (563)
|..+++.+..+ .+|...+.+..++ +. ++++|+.|++|+|||+.+++++.++.+|...+. +++|
T Consensus 266 d~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~---------~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vaf 334 (356)
T 2w18_A 266 NPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DH---------CAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKW 334 (356)
T ss_dssp ETTTTEEEEEEEECCCTTCCCCEEEEEEE--TT---------EEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEE
T ss_pred ECCCCEEEEEEEeeccCCCcceeEccccC--CC---------EEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEE
Confidence 99999877554 2455444444433 21 689999999999999999999999999987655 5899
Q ss_pred cCCCCEEEEEeCCCcEEEEec
Q 008496 500 SPTGEYLASGSLDKSMHIWSL 520 (563)
Q Consensus 500 spdg~~lasgs~dg~v~iw~~ 520 (563)
||||++||+|+.|++|+|||+
T Consensus 335 SPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 335 SGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp CSSSSEEEEECTTSCEEEEEE
T ss_pred CCCCCEEEEEECCCcEEEecC
Confidence 999999999999999999985
No 127
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.97 E-value=9.9e-29 Score=253.58 Aligned_cols=282 Identities=13% Similarity=0.103 Sum_probs=225.9
Q ss_pred CceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeCC
Q 008496 216 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD 295 (563)
Q Consensus 216 ~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~d 295 (563)
..+.+++|+|++.++++++.|+.|++||+.++.... .........+...|.+++|++++.++++++.|
T Consensus 123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~------------~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d 190 (433)
T 3bws_A 123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVR------------LSPPEKYKKKLGFVETISIPEHNELWVSQMQA 190 (433)
T ss_dssp SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEE------------ECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGG
T ss_pred CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEee------------ecCcccccccCCceeEEEEcCCCEEEEEECCC
Confidence 446689999987888888899999999987654210 00001122456689999999999999999999
Q ss_pred CeEEEEEcCC-ceeEeeccCCCCEEEEEeCCCCCEEE-EeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCCc-eEE
Q 008496 296 GQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLL-TGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV-SFA 372 (563)
Q Consensus 296 g~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~-s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 372 (563)
+.|++|+... .....+..|...+.+++|+|++++++ +++.|+.|++||+++++....+..+. .+..+.|.++. .++
T Consensus 191 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~g~~l~ 269 (433)
T 3bws_A 191 NAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIG-LPRGLLLSKDGKELY 269 (433)
T ss_dssp TEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCS-EEEEEEECTTSSEEE
T ss_pred CEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCC-CceEEEEcCCCCEEE
Confidence 9999999764 56677788999999999999999885 55579999999999998877666543 46777886554 555
Q ss_pred EEe--------CCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCC-EEEEEeCCCcEEEEeCCCCceeeeecccCCCE
Q 008496 373 TSS--------TDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGS-LLASCSDDVTAKIWNMKQDKYVHDLREHSKEI 443 (563)
Q Consensus 373 ~~~--------~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~-~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i 443 (563)
+++ .|+.|++|++...+.+..+ .|...+.+++|+|+++ ++++++.|+.|++||+.+++.+..+. +...+
T Consensus 270 ~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~ 347 (433)
T 3bws_A 270 IAQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKP 347 (433)
T ss_dssp EEEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSE
T ss_pred EEECCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCC
Confidence 555 4889999999887766554 4566889999999997 45777899999999999988877665 67789
Q ss_pred EEEEEccCCCCCCCCCCcEEEEEEeC---------------CCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEE
Q 008496 444 YTIRWSPTGSGTNNPNQQLILASASF---------------DSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLAS 508 (563)
Q Consensus 444 ~~~~~~p~~~~~~~~~~~~~l~s~s~---------------dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~las 508 (563)
.+++|+|++. +|++++. ||.|++||+.+++.+..+..+ ..+.+++|+|||++|++
T Consensus 348 ~~~~~s~dg~---------~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~ 417 (433)
T 3bws_A 348 NTIALSPDGK---------YLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG-NQPTGLDVSPDNRYLVI 417 (433)
T ss_dssp EEEEECTTSS---------EEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECS-SSEEEEEECTTSCEEEE
T ss_pred CeEEEcCCCC---------EEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCC-CCCceEEEcCCCCEEEE
Confidence 9999999875 4555544 679999999999998888764 57899999999999998
Q ss_pred EeC-CCcEEEEecCC
Q 008496 509 GSL-DKSMHIWSLKE 522 (563)
Q Consensus 509 gs~-dg~v~iw~~~~ 522 (563)
++. |+.|++|++..
T Consensus 418 ~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 418 SDFLDHQIRVYRRDG 432 (433)
T ss_dssp EETTTTEEEEEEETT
T ss_pred EECCCCeEEEEEecC
Confidence 875 99999999863
No 128
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.97 E-value=1.6e-27 Score=250.51 Aligned_cols=312 Identities=12% Similarity=0.106 Sum_probs=242.1
Q ss_pred EECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeCCCeEEEE
Q 008496 222 AWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIW 301 (563)
Q Consensus 222 ~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw 301 (563)
+|+|++.++++++.|++|++||..+++.. ..+.. ...+..++|+|+|++|++++.|+.|++|
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~-------------~~i~~-----g~~~~~v~~spdg~~l~v~~~d~~V~v~ 205 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIV-------------KVIDT-----GYAVHISRMSASGRYLLVIGRDARIDMI 205 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEE-------------EEEEC-----STTEEEEEECTTSCEEEEEETTSEEEEE
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEE-------------EEEec-----CcccceEEECCCCCEEEEECCCCeEEEE
Confidence 38899999999999999999998765421 11111 1228899999999999999999999999
Q ss_pred Ec--C-CceeEeeccCCCCEEEEEeCC----CCCEEEEee-CCCcEEEEECCCCceeEEeeec----------cc-CeEE
Q 008496 302 ST--N-GDLKCTLSKHKGPIFSLKWNK----KGDYLLTGS-CDKTAIVWDVKTEEWKQQFEFH----------SG-PTLD 362 (563)
Q Consensus 302 ~~--~-~~~~~~~~~h~~~V~~l~~~~----~~~~l~s~s-~D~~v~iwd~~~~~~~~~~~~~----------~~-~~~~ 362 (563)
|. . +....++. +...+..++|+| +|++|++++ .+++|.+||..+++++..+..+ .. .+..
T Consensus 206 D~~~~t~~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~ 284 (543)
T 1nir_A 206 DLWAKEPTKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAA 284 (543)
T ss_dssp ETTSSSCEEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEE
T ss_pred ECcCCCCcEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEE
Confidence 98 3 45555665 445679999999 999999887 4899999999999988877642 22 3455
Q ss_pred EecCC--CceEEEEeCCCeEEEEEcCCCccee--eecCCCcceeEEEECCCCCEEEE-EeCCCcEEEEeCCCCceeeeec
Q 008496 363 VDWRN--NVSFATSSTDNMIYVCKIGENRPIK--TFAGHQGEVNCVKWDPTGSLLAS-CSDDVTAKIWNMKQDKYVHDLR 437 (563)
Q Consensus 363 ~~~~~--~~~~~~~~~d~~i~~~~~~~~~~~~--~~~~h~~~i~~~~~~~~~~~las-~s~dg~i~iwd~~~~~~~~~~~ 437 (563)
+.+.. ...+++...++.|.+|+....+.+. .+ .+...+..+.|+|+|++|++ +..+++|.+||..+++++..+.
T Consensus 285 i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~ 363 (543)
T 1nir_A 285 IIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVD 363 (543)
T ss_dssp EEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEE
T ss_pred EEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEe-ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeec
Confidence 55543 3456777889999999998755433 33 35566888999999997655 4568999999999999887765
Q ss_pred c----cCCCEEEEEEccCCCCCCCCCCcEEEEEEe-CCCeEEEEeCCC-------CeEEEEecCCCCCEEEEEEcCCCCE
Q 008496 438 E----HSKEIYTIRWSPTGSGTNNPNQQLILASAS-FDSTVKLWDVEL-------GKLLYSLNGHREPVYSLAFSPTGEY 505 (563)
Q Consensus 438 ~----~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s-~dg~i~iwd~~~-------~~~~~~~~~h~~~i~~l~~spdg~~ 505 (563)
. |.+....+ ++|++. .++++++ .|++|++||+.+ .+++.++.+|...+..++|||||++
T Consensus 364 ~g~~ph~g~g~~~-~~p~~g--------~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~ 434 (543)
T 1nir_A 364 VGKTPHPGRGANF-VHPKYG--------PVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSH 434 (543)
T ss_dssp CSSSBCCTTCEEE-EETTTE--------EEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCE
T ss_pred cCCCCCCCCCccc-CCCCCc--------cEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCc
Confidence 4 54433333 345432 3677776 689999999998 8999999999888899999999999
Q ss_pred EEEEe-------CCCcEEEEecCCCeeE-EEE---------ecCCCEEEEEEcCCCCEEEEEEC-----CCeEEEEEee
Q 008496 506 LASGS-------LDKSMHIWSLKEGKIV-KTY---------TGNGGIFEVCWNKEGDKIAACFA-----NHTVCVLDFR 562 (563)
Q Consensus 506 lasgs-------~dg~v~iw~~~~~~~~-~~~---------~~~~~i~~l~w~~~g~~la~~~~-----~~~v~v~~~~ 562 (563)
|++++ .+++|.|||+.+++.+ ..+ .+...+..+.|+|+|+.|.++.. ++.|.|||.+
T Consensus 435 l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~ 513 (543)
T 1nir_A 435 LYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDK 513 (543)
T ss_dssp EEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETT
T ss_pred EEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECC
Confidence 99987 2679999999999876 554 22456889999999999998743 6899999864
No 129
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.96 E-value=6.3e-28 Score=245.91 Aligned_cols=299 Identities=15% Similarity=0.159 Sum_probs=224.5
Q ss_pred CceEEEEECCCC-CEEEEee----CCC----cEEEEec--CCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECC
Q 008496 216 SEVCACAWSPAG-SLLASGS----GDS----TARIWTI--ADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG 284 (563)
Q Consensus 216 ~~V~~~~~sp~~-~~latgs----~D~----~i~iW~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~ 284 (563)
..|...+|++.| .++++|+ .|| .++|||+ .++... ....+.+ +...+..+++++
T Consensus 63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~-----------~~~~~~~----~~~~~~~~~~~~ 127 (415)
T 2hqs_A 63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVL-----------AQNSYKV----NKQWLRYAGHTA 127 (415)
T ss_dssp GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEE-----------EEEEEEE----CGGGHHHHHHHH
T ss_pred cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEE-----------eeeEEEc----ChhHHHHHHHHH
Confidence 456778899987 4777887 567 8999999 665421 0011111 112233344432
Q ss_pred --------------CCCEEEEEeCC------CeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCC---cEEE
Q 008496 285 --------------EGTLLATGSYD------GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDK---TAIV 341 (563)
Q Consensus 285 --------------~g~~l~sg~~d------g~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~---~v~i 341 (563)
.+..++.++.+ +.|++||.++.....+..|...|.+++|+|+|++|++++.|+ .|++
T Consensus 128 ~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~ 207 (415)
T 2hqs_A 128 SDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVI 207 (415)
T ss_dssp HHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEE
T ss_pred HHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEE
Confidence 25666666654 799999999877788889999999999999999999999885 9999
Q ss_pred EECCCCceeEEeeecccCeEEEecCCCce-EE-EEeCCC--eEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEe
Q 008496 342 WDVKTEEWKQQFEFHSGPTLDVDWRNNVS-FA-TSSTDN--MIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS 417 (563)
Q Consensus 342 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~d~--~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s 417 (563)
||+.+++.. .+..+...+..+.|.++.. ++ +++.++ .|++|++.+.+. ..+..|...+.+++|+|+|+.|++++
T Consensus 208 ~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s 285 (415)
T 2hqs_A 208 QTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTS 285 (415)
T ss_dssp EETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEE
T ss_pred EECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEE
Confidence 999998765 4555667788999987654 44 455444 599999987654 56778888999999999999998888
Q ss_pred C-CC--cEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCC---CeEEEEeCCCCeEEEEecCCC
Q 008496 418 D-DV--TAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD---STVKLWDVELGKLLYSLNGHR 491 (563)
Q Consensus 418 ~-dg--~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~h~ 491 (563)
. ++ .|.+||+.++.. ..+..+...+.+++|+|+|. +|++++.+ ..|++||+.+++.. .+..+.
T Consensus 286 ~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdG~---------~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~ 354 (415)
T 2hqs_A 286 DQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGK---------FMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF 354 (415)
T ss_dssp CTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSS---------EEEEEEECSSCEEEEEEETTTCCEE-ECCCSS
T ss_pred CCCCCcEEEEEECCCCCE-EEEecCCCcccCeEECCCCC---------EEEEEECcCCceEEEEEECCCCCEE-EecCCC
Confidence 6 45 577778887764 34556777899999999986 45555543 58999999988774 566554
Q ss_pred CCEEEEEEcCCCCEEEEEeCCC---cEEEEecCCCeeEEEEec-CCCEEEEEEcCCC
Q 008496 492 EPVYSLAFSPTGEYLASGSLDK---SMHIWSLKEGKIVKTYTG-NGGIFEVCWNKEG 544 (563)
Q Consensus 492 ~~i~~l~~spdg~~lasgs~dg---~v~iw~~~~~~~~~~~~~-~~~i~~l~w~~~g 544 (563)
.+.+++|+|||++|++++.++ .|++||+..+. +..+.. .+.|.+++|+|.-
T Consensus 355 -~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~-~~~l~~~~~~v~~~~~~~~~ 409 (415)
T 2hqs_A 355 -LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRF-KARLPATDGQVKFPAWSPYL 409 (415)
T ss_dssp -SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCC-EEECCCSSSEEEEEEECCCC
T ss_pred -CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCc-EEEeeCCCCCCcCCcccccc
Confidence 899999999999999988877 79999987544 455544 4679999999964
No 130
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.96 E-value=1.5e-27 Score=262.11 Aligned_cols=333 Identities=15% Similarity=0.141 Sum_probs=239.6
Q ss_pred CceEEEEECCCCCEEEEeeC-CC-----cEEEEecCCCCCcCCCCCCCce----EEEE--Eeeecccc-cCCCCeEEEEE
Q 008496 216 SEVCACAWSPAGSLLASGSG-DS-----TARIWTIADGTSNGGAQNGPLN----VLVL--KHVKGRTN-EKSKDVTTLDW 282 (563)
Q Consensus 216 ~~V~~~~~sp~~~~latgs~-D~-----~i~iW~~~~~~~~~~~~~~~~~----~~~~--~~~~~~~~-~~~~~V~~l~~ 282 (563)
..|.+++|||||++|++++. |+ .|++|++.++............ .+.. ........ .....|.+++|
T Consensus 37 ~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 116 (741)
T 2ecf_A 37 PTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQW 116 (741)
T ss_dssp CCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEE
T ss_pred CCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEE
Confidence 45889999999999999998 88 8999999876421100000000 0000 00000000 00023788999
Q ss_pred CCCCCEEEEEeCCCeEEEEEcCCc---eeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccC
Q 008496 283 NGEGTLLATGSYDGQARIWSTNGD---LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGP 359 (563)
Q Consensus 283 s~~g~~l~sg~~dg~i~vw~~~~~---~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~ 359 (563)
||||++|++++. +.|++|+..+. ....+..|...+..++|+|+|++|++++ ++.|++||+.+++.......+...
T Consensus 117 SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~~ 194 (741)
T 2ecf_A 117 SPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGSTT 194 (741)
T ss_dssp CTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCCSS
T ss_pred CCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCccc
Confidence 999999999987 99999998876 6667788889999999999999999887 569999999988765544333221
Q ss_pred ----------------eEEEecCCCc-eEEEEeCCC---------------------------------eEEEEEcCC-C
Q 008496 360 ----------------TLDVDWRNNV-SFATSSTDN---------------------------------MIYVCKIGE-N 388 (563)
Q Consensus 360 ----------------~~~~~~~~~~-~~~~~~~d~---------------------------------~i~~~~~~~-~ 388 (563)
+..+.|.++. .++.++.|+ .|++|++.+ .
T Consensus 195 ~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~ 274 (741)
T 2ecf_A 195 IGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQA 274 (741)
T ss_dssp EEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTC
T ss_pred eeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCC
Confidence 3557787554 455555443 788888877 6
Q ss_pred cceeeec--CCCcceeEEEECCCCCEEEEEeC-----CCcEEEEeCCCCceeeeecccCC----CEEEEEEccCCCCCCC
Q 008496 389 RPIKTFA--GHQGEVNCVKWDPTGSLLASCSD-----DVTAKIWNMKQDKYVHDLREHSK----EIYTIRWSPTGSGTNN 457 (563)
Q Consensus 389 ~~~~~~~--~h~~~i~~~~~~~~~~~las~s~-----dg~i~iwd~~~~~~~~~~~~~~~----~i~~~~~~p~~~~~~~ 457 (563)
+...... .|...+..++| |||+.|++++. +..|++||+.+++....+..+.. .+..+.|+|+|.
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~---- 349 (741)
T 2ecf_A 275 QTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGS---- 349 (741)
T ss_dssp CCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSC----
T ss_pred ceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCe----
Confidence 6544433 47788999999 99999887653 67899999999887666655543 345789999875
Q ss_pred CCCcEEEEEEeCCCeEEEEeCC-CCeEEEEecCCCCCEEEE-EEcCCCCEEEE-EeCCC--cEEEEecCC-CeeEEEEec
Q 008496 458 PNQQLILASASFDSTVKLWDVE-LGKLLYSLNGHREPVYSL-AFSPTGEYLAS-GSLDK--SMHIWSLKE-GKIVKTYTG 531 (563)
Q Consensus 458 ~~~~~~l~s~s~dg~i~iwd~~-~~~~~~~~~~h~~~i~~l-~~spdg~~las-gs~dg--~v~iw~~~~-~~~~~~~~~ 531 (563)
++++++.||.++||.+. .++ ...+..|...|.++ +|||||+.|+. ++.++ .++||++.. ++.+..+..
T Consensus 350 -----~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~ 423 (741)
T 2ecf_A 350 -----ILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK 423 (741)
T ss_dssp -----EEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC
T ss_pred -----EEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc
Confidence 67888999988888765 355 77888888889887 59999997754 55555 899999864 555666666
Q ss_pred CCCEEEEEEcCCCCEEEEEECC----CeEEEEEe
Q 008496 532 NGGIFEVCWNKEGDKIAACFAN----HTVCVLDF 561 (563)
Q Consensus 532 ~~~i~~l~w~~~g~~la~~~~~----~~v~v~~~ 561 (563)
...+..++|+|||++|++.+.+ ..+.+++.
T Consensus 424 ~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~ 457 (741)
T 2ecf_A 424 APGMHSASFARNASVYVDSWSNNSTPPQIELFRA 457 (741)
T ss_dssp SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEET
T ss_pred CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEc
Confidence 6778999999999999987654 34566653
No 131
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.95 E-value=9.5e-26 Score=256.58 Aligned_cols=323 Identities=11% Similarity=0.086 Sum_probs=236.8
Q ss_pred CCceeEecCCCCceEEEEECCCCCEEEEeeCC------CcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCe-
Q 008496 205 NSDVTILEGHTSEVCACAWSPAGSLLASGSGD------STARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDV- 277 (563)
Q Consensus 205 ~~~~~~l~~h~~~V~~~~~sp~~~~latgs~D------~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V- 277 (563)
......|.+|...|.+++|||||++||+++.+ ..|++|++.++.. ..+. .+...+
T Consensus 42 gg~~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~~--------------~~lt----~~~~~~~ 103 (1045)
T 1k32_A 42 SGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEI--------------KRIT----YFSGKST 103 (1045)
T ss_dssp TCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEE--------------EECC----CCCEEEE
T ss_pred CCcEEEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCCe--------------EEcc----cCCCccc
Confidence 33456778899999999999999999988643 4789999865431 1111 112334
Q ss_pred ------EEEEECCCCCEEEEEeCC------CeEEEEEcCCceeE------------------------------------
Q 008496 278 ------TTLDWNGEGTLLATGSYD------GQARIWSTNGDLKC------------------------------------ 309 (563)
Q Consensus 278 ------~~l~~s~~g~~l~sg~~d------g~i~vw~~~~~~~~------------------------------------ 309 (563)
..++|+|||+++++++.+ ..|++|+..+....
T Consensus 104 ~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~ 183 (1045)
T 1k32_A 104 GRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGT 183 (1045)
T ss_dssp TTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTT
T ss_pred ccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCC
Confidence 889999999977887754 35777775432211
Q ss_pred --------------eeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCC-CceeEEeeecccCeEEEecCCCce-EEE
Q 008496 310 --------------TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT-EEWKQQFEFHSGPTLDVDWRNNVS-FAT 373 (563)
Q Consensus 310 --------------~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 373 (563)
.+.+|...+.++.|+++ ..+++++.|+++.||.+.. +.....+..+. .+....|.++.. ++.
T Consensus 184 ~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~ 261 (1045)
T 1k32_A 184 RGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILF 261 (1045)
T ss_dssp CCEEEEEEETTEEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEE
T ss_pred cCCEEEECCCCCeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEE
Confidence 22456777888889887 5666778889999997643 22333333333 233445654443 444
Q ss_pred EeCCCeEEEEEcCCCcceeeecC-----------CCcceeEEEEC-CCCCEEEEEeCCCcEEEEeCCCCceeeeecccCC
Q 008496 374 SSTDNMIYVCKIGENRPIKTFAG-----------HQGEVNCVKWD-PTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSK 441 (563)
Q Consensus 374 ~~~d~~i~~~~~~~~~~~~~~~~-----------h~~~i~~~~~~-~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~ 441 (563)
+ .++.|++|++.. ..+..+.+ |...+.+++|+ |+|+.|++++ ++.+.+|+...+... .+..|..
T Consensus 262 ~-~~~~i~~~d~~~-~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~-~~~~~~~ 337 (1045)
T 1k32_A 262 S-KGGSIYIFNPDT-EKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVL-KVPEPLR 337 (1045)
T ss_dssp E-ETTEEEEECTTT-CCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEE-ECSCCSC
T ss_pred E-eCCEEEEecCCc-eEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceE-EccCCCc
Confidence 3 589999999843 33445544 34578999999 9999999888 789999999877644 4566777
Q ss_pred -CEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEE-EEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 008496 442 -EIYTIRWSPTGSGTNNPNQQLILASASFDSTVK-LWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWS 519 (563)
Q Consensus 442 -~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~-iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~ 519 (563)
.+..++|+ ++. .|++++.++.|. +||+..++.. .+.+|...+..++|||||++||+++.++.|++||
T Consensus 338 ~~~~~~~~s-dg~---------~l~~~s~~~~l~~~~d~~~~~~~-~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d 406 (1045)
T 1k32_A 338 IRYVRRGGD-TKV---------AFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVD 406 (1045)
T ss_dssp EEEEEECSS-SEE---------EEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred ceEEeeeEc-CCC---------eEEEEECCCceEEEEECCCCCce-EecCCccceeeeEECCCCCEEEEECCCCeEEEEE
Confidence 88999998 764 577777788898 9999877654 4447888899999999999999999999999999
Q ss_pred cCCCeeEEEEec-CCCEEEEEEcCCCCEEEEEECCC----------eEEEEEee
Q 008496 520 LKEGKIVKTYTG-NGGIFEVCWNKEGDKIAACFANH----------TVCVLDFR 562 (563)
Q Consensus 520 ~~~~~~~~~~~~-~~~i~~l~w~~~g~~la~~~~~~----------~v~v~~~~ 562 (563)
+.++++...... .+.+..++|+|||++||++..++ .|.+||+.
T Consensus 407 ~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~ 460 (1045)
T 1k32_A 407 LETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDME 460 (1045)
T ss_dssp TTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETT
T ss_pred CCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECC
Confidence 999998777744 45678999999999999887654 89999864
No 132
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.95 E-value=2.3e-25 Score=253.41 Aligned_cols=337 Identities=13% Similarity=0.125 Sum_probs=247.1
Q ss_pred ceeEecCCCCce-------EEEEECCCCCEEEEeeCC------CcEEEEecCCCCCcCCCCCC-----------------
Q 008496 207 DVTILEGHTSEV-------CACAWSPAGSLLASGSGD------STARIWTIADGTSNGGAQNG----------------- 256 (563)
Q Consensus 207 ~~~~l~~h~~~V-------~~~~~sp~~~~latgs~D------~~i~iW~~~~~~~~~~~~~~----------------- 256 (563)
....|.+|...+ .+++|||||+++++++.+ ..+.+|++.++....-....
T Consensus 91 ~~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~ 170 (1045)
T 1k32_A 91 EIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNT 170 (1045)
T ss_dssp EEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESC
T ss_pred CeEEcccCCCcccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccC
Confidence 345677888888 999999999988888755 35777777554321100000
Q ss_pred -------------CceEEEEEe--eecccccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEc--CCceeEeeccCCCCEE
Q 008496 257 -------------PLNVLVLKH--VKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWST--NGDLKCTLSKHKGPIF 319 (563)
Q Consensus 257 -------------~~~~~~~~~--~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~--~~~~~~~~~~h~~~V~ 319 (563)
....+.... .......+...+.++.|+++ .++++++.+|.++||.. .+.....+..|. .+.
T Consensus 171 ~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~ 248 (1045)
T 1k32_A 171 FELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYY 248 (1045)
T ss_dssp SCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSC
T ss_pred CCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC-Ccc
Confidence 000000000 00011245677899999998 67778888899999974 355555666665 356
Q ss_pred EEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeee-----------cccCeEEEecC-CCce-EEEEeCCCeEEEEEcC
Q 008496 320 SLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEF-----------HSGPTLDVDWR-NNVS-FATSSTDNMIYVCKIG 386 (563)
Q Consensus 320 ~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~-----------~~~~~~~~~~~-~~~~-~~~~~~d~~i~~~~~~ 386 (563)
.++|+|+|++|+++ .++.|.+||+...... .+.. +...+..+.|. ++.. ++.++ ++.+++|+..
T Consensus 249 ~~~~SpDG~~la~~-~~~~i~~~d~~~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~ 325 (1045)
T 1k32_A 249 PRHLNTDGRRILFS-KGGSIYIFNPDTEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVS 325 (1045)
T ss_dssp EEEEEESSSCEEEE-ETTEEEEECTTTCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTT
T ss_pred eeeEcCCCCEEEEE-eCCEEEEecCCceEee-eeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCC
Confidence 77999999998887 5899999998554433 3332 22346678887 6654 44444 8899999987
Q ss_pred CCcceeeecCCCc-ceeEEEECCCCCEEEEEeCCCcEE-EEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEE
Q 008496 387 ENRPIKTFAGHQG-EVNCVKWDPTGSLLASCSDDVTAK-IWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLIL 464 (563)
Q Consensus 387 ~~~~~~~~~~h~~-~i~~~~~~~~~~~las~s~dg~i~-iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l 464 (563)
..... .+..|.+ .+.+++|+ +|+.|++++.++.+. +|++.++... .+..|...+..++|+|+|. .|
T Consensus 326 ~~~~~-~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~-~l~~~~~~~~~~~~SpDG~---------~l 393 (1045)
T 1k32_A 326 GTYVL-KVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGK---------FA 393 (1045)
T ss_dssp SSBEE-ECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSS---------EE
T ss_pred CCceE-EccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCce-EecCCccceeeeEECCCCC---------EE
Confidence 66543 4667777 89999999 999999999988888 9998877654 3447778899999999986 78
Q ss_pred EEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCC----------cEEEEecCCCeeEEEEecCCC
Q 008496 465 ASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDK----------SMHIWSLKEGKIVKTYTGNGG 534 (563)
Q Consensus 465 ~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg----------~v~iw~~~~~~~~~~~~~~~~ 534 (563)
++++.++.|++||+.+++....+.+|...|.+++|||||++||+++.++ .|++||+.+++..........
T Consensus 394 a~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~~~~ 473 (1045)
T 1k32_A 394 VVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSH 473 (1045)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSB
T ss_pred EEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEeeCCCcc
Confidence 8999999999999999998877778999999999999999999887654 899999999884333233456
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEE
Q 008496 535 IFEVCWNKEGDKIAACFANHTVCVLD 560 (563)
Q Consensus 535 i~~l~w~~~g~~la~~~~~~~v~v~~ 560 (563)
+..++|+|||++|++++.++...+|+
T Consensus 474 ~~~~~~spdG~~l~~~s~~~~~~~~~ 499 (1045)
T 1k32_A 474 DYAPAFDADSKNLYYLSYRSLDPSPD 499 (1045)
T ss_dssp EEEEEECTTSCEEEEEESCCCCCEEC
T ss_pred cCCceEcCCCCEEEEEecccCCcCcc
Confidence 78899999999999998876655554
No 133
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.94 E-value=1.1e-24 Score=237.89 Aligned_cols=319 Identities=14% Similarity=0.161 Sum_probs=225.8
Q ss_pred eEEEEECCCCCEEEEeeCCCcEEEEecCCCCCc-CCCCCCCceEEEEEeeec---------ccccCCCCeEEEEECCCCC
Q 008496 218 VCACAWSPAGSLLASGSGDSTARIWTIADGTSN-GGAQNGPLNVLVLKHVKG---------RTNEKSKDVTTLDWNGEGT 287 (563)
Q Consensus 218 V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~-~~~~~~~~~~~~~~~~~~---------~~~~~~~~V~~l~~s~~g~ 287 (563)
+..+.|. |..+++++.|+ | +||+.++... . .+ ..+... ........|.+++|||| .
T Consensus 28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~--------~l-~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~ 93 (706)
T 2z3z_A 28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQT--------TR-FSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-G 93 (706)
T ss_dssp CTTCEEE--TTEEEEEETTE-E-EEEC-------C--------EE-EEHHHHHTTC-----------CCCEEEEETTT-T
T ss_pred CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeE--------Ee-echhHhhhhccchhccccccccCceeEEECCC-C
Confidence 4557888 67777888888 7 9999876531 0 00 000000 00011246999999999 6
Q ss_pred EEEEEeCCCeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCC-----CceeEEeeecccC---
Q 008496 288 LLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT-----EEWKQQFEFHSGP--- 359 (563)
Q Consensus 288 ~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~-----~~~~~~~~~~~~~--- 359 (563)
.++.+ .++.+++|+..+.....+..+...+.+++|+|+|++|+++ .|+.|++||+.+ ++..+........
T Consensus 94 ~~~~~-~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~ 171 (706)
T 2z3z_A 94 LVVLF-TQGGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVY 171 (706)
T ss_dssp EEEEE-ETTEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEE
T ss_pred eEEEE-ECCEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEc
Confidence 66555 4599999999876666666777888999999999999985 789999999998 7765544333332
Q ss_pred -----------eEEEecCCCc-eEEEEe---------------------------------CCCeEEEEEcCCCcceeee
Q 008496 360 -----------TLDVDWRNNV-SFATSS---------------------------------TDNMIYVCKIGENRPIKTF 394 (563)
Q Consensus 360 -----------~~~~~~~~~~-~~~~~~---------------------------------~d~~i~~~~~~~~~~~~~~ 394 (563)
+..+.|.++. .++.++ .+..|++|++.++......
T Consensus 172 g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~ 251 (706)
T 2z3z_A 172 GQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQ 251 (706)
T ss_dssp SSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECC
T ss_pred ccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeec
Confidence 3577887654 455554 3467999999887654443
Q ss_pred c--CCCcceeEEEECCCCCEEEEEeCCC-----cEEEEeCCCCceeeeec-c-cCC---CEEEEEEcc--CCCCCCCCCC
Q 008496 395 A--GHQGEVNCVKWDPTGSLLASCSDDV-----TAKIWNMKQDKYVHDLR-E-HSK---EIYTIRWSP--TGSGTNNPNQ 460 (563)
Q Consensus 395 ~--~h~~~i~~~~~~~~~~~las~s~dg-----~i~iwd~~~~~~~~~~~-~-~~~---~i~~~~~~p--~~~~~~~~~~ 460 (563)
. .|...+.+++|+|||+.|++++.++ .|++||+.++.....+. . +.. .+..+.|+| +|.
T Consensus 252 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~------- 324 (706)
T 2z3z_A 252 TGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQ------- 324 (706)
T ss_dssp CCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSE-------
T ss_pred cCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCE-------
Confidence 2 4667899999999999999887765 89999999883333332 1 121 235678998 764
Q ss_pred cEEEEEEeCCCeEEEEeCC-CCeEEEEecCCCCCEEE-EEEcCCCCEEEEEeC-CC----cEEEEecCCCeeEEEEecCC
Q 008496 461 QLILASASFDSTVKLWDVE-LGKLLYSLNGHREPVYS-LAFSPTGEYLASGSL-DK----SMHIWSLKEGKIVKTYTGNG 533 (563)
Q Consensus 461 ~~~l~s~s~dg~i~iwd~~-~~~~~~~~~~h~~~i~~-l~~spdg~~lasgs~-dg----~v~iw~~~~~~~~~~~~~~~ 533 (563)
++++++.||.++||.+. .+..+..+..|...+.+ ++|+|||+.|+.++. ++ .|..|++.+++ +..+....
T Consensus 325 --~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l~~~~ 401 (706)
T 2z3z_A 325 --FIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-TKDLTPES 401 (706)
T ss_dssp --EEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEESCCSS
T ss_pred --EEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-ceeccCCC
Confidence 67888999999999876 67778888888888887 799999998866554 44 67777877776 34444566
Q ss_pred CEEEEEEcCCCCEEEEEECC----CeEEEEEee
Q 008496 534 GIFEVCWNKEGDKIAACFAN----HTVCVLDFR 562 (563)
Q Consensus 534 ~i~~l~w~~~g~~la~~~~~----~~v~v~~~~ 562 (563)
.+..++|+|||++|++.+.+ +.+.+||++
T Consensus 402 ~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~ 434 (706)
T 2z3z_A 402 GMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIG 434 (706)
T ss_dssp SEEEEEECTTSSEEEEEEECSSCSCEEEEEESS
T ss_pred ceEEEEECCCCCEEEEEecCCCCCcEEEEEECC
Confidence 78999999999999887554 458898864
No 134
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.94 E-value=1.3e-24 Score=221.39 Aligned_cols=272 Identities=13% Similarity=0.110 Sum_probs=210.8
Q ss_pred CeEEEEECCCCC-EEEEEe----CCC----eEEEEEc--C-Ccee--EeeccCCCCEEEEEeCC--------------CC
Q 008496 276 DVTTLDWNGEGT-LLATGS----YDG----QARIWST--N-GDLK--CTLSKHKGPIFSLKWNK--------------KG 327 (563)
Q Consensus 276 ~V~~l~~s~~g~-~l~sg~----~dg----~i~vw~~--~-~~~~--~~~~~h~~~V~~l~~~~--------------~~ 327 (563)
.|...+|++.|. ++++|+ .+| .++|||. . ++.. ..+.+|...+..+++++ .+
T Consensus 64 ~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~ 143 (415)
T 2hqs_A 64 EVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFR 143 (415)
T ss_dssp GCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTT
T ss_pred CcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCC
Confidence 466778888774 666776 467 8999998 4 4544 45778888777777664 15
Q ss_pred CEEEEeeCC------CcEEEEECCCCceeEEeeecccCeEEEecCCCc-eEEEEeCCC---eEEEEEcCCCcceeeecCC
Q 008496 328 DYLLTGSCD------KTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV-SFATSSTDN---MIYVCKIGENRPIKTFAGH 397 (563)
Q Consensus 328 ~~l~s~s~D------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~---~i~~~~~~~~~~~~~~~~h 397 (563)
..++.++.+ ++|++||+... ....+..|...+..+.|.++. .++.++.++ .|++|++.+++.. .+..|
T Consensus 144 ~~l~~~s~~~~~~~~~~i~i~d~~g~-~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~ 221 (415)
T 2hqs_A 144 TRIAYVVQTNGGQFPYELRVSDYDGY-NQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASF 221 (415)
T ss_dssp CEEEEEEECSSSSCCEEEEEEETTSC-SCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECC
T ss_pred CEEEEEEecCCCCccceEEEEcCCCC-CCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecC
Confidence 677766654 79999999754 456677788889999998654 567777664 9999999887664 56778
Q ss_pred CcceeEEEECCCCCEEE-EEeCCCc--EEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeC-CC--
Q 008496 398 QGEVNCVKWDPTGSLLA-SCSDDVT--AKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASF-DS-- 471 (563)
Q Consensus 398 ~~~i~~~~~~~~~~~la-s~s~dg~--i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~-dg-- 471 (563)
.+.+.+++|+|||+.|+ +++.|+. |++||+.+++. ..+..|...+.+++|+|+|. .|++++. ++
T Consensus 222 ~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~---------~l~~~s~~~g~~ 291 (415)
T 2hqs_A 222 PRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQ---------NLAFTSDQAGRP 291 (415)
T ss_dssp SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSS---------EEEEEECTTSSC
T ss_pred CCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCC---------EEEEEECCCCCc
Confidence 88999999999999887 6776665 99999988765 56777888999999999986 4565554 45
Q ss_pred eEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCC---CcEEEEecCCCeeEEEEecCCCEEEEEEcCCCCEEE
Q 008496 472 TVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLD---KSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIA 548 (563)
Q Consensus 472 ~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~d---g~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~g~~la 548 (563)
.|.+||+.+++. ..+..+...+.+++|||||++|++++.+ ..|++||+.++++. .+.....+..++|+|+|+.|+
T Consensus 292 ~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~~~~~~~~spdg~~l~ 369 (415)
T 2hqs_A 292 QVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTFLDETPSLAPNGTMVI 369 (415)
T ss_dssp EEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSSSCEEEEECTTSSEEE
T ss_pred EEEEEECCCCCE-EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCCCcCCeEEcCCCCEEE
Confidence 678889987764 4455677789999999999999988764 58999999998874 344445789999999999999
Q ss_pred EEECCC---eEEEEEe
Q 008496 549 ACFANH---TVCVLDF 561 (563)
Q Consensus 549 ~~~~~~---~v~v~~~ 561 (563)
+++.++ .+.+||+
T Consensus 370 ~~s~~~~~~~l~~~d~ 385 (415)
T 2hqs_A 370 YSSSQGMGSVLNLVST 385 (415)
T ss_dssp EEEEETTEEEEEEEET
T ss_pred EEEcCCCccEEEEEEC
Confidence 887766 6888875
No 135
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.94 E-value=3.9e-25 Score=242.23 Aligned_cols=313 Identities=11% Similarity=0.091 Sum_probs=217.6
Q ss_pred eEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeCC--
Q 008496 218 VCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD-- 295 (563)
Q Consensus 218 V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~d-- 295 (563)
+.+++|+|+|+++++ +.|++|++|++.++... .....+ ......|.+++|||||++|++++.+
T Consensus 19 ~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~-------------~~~~~~-~~~~~~v~~~~~SpDg~~l~~~~~~~~ 83 (723)
T 1xfd_A 19 DPEAKWISDTEFIYR-EQKGTVRLWNVETNTST-------------VLIEGK-KIESLRAIRYEISPDREYALFSYNVEP 83 (723)
T ss_dssp CCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCE-------------EEECTT-TTTTTTCSEEEECTTSSEEEEEESCCC
T ss_pred ccccEEcCCCcEEEE-eCCCCEEEEECCCCcEE-------------EEeccc-cccccccceEEECCCCCEEEEEecCcc
Confidence 567899999998776 78999999998765421 011111 0111248999999999999999875
Q ss_pred -------CeEEEEEcCCceeEeec---cCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCe-----
Q 008496 296 -------GQARIWSTNGDLKCTLS---KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPT----- 360 (563)
Q Consensus 296 -------g~i~vw~~~~~~~~~~~---~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~----- 360 (563)
+.+++|+..+.....+. .|...+..++|+|+|++|++++. +.|++||+.+++..+....+...+
T Consensus 84 ~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~ 162 (723)
T 1xfd_A 84 IYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGL 162 (723)
T ss_dssp CSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEE
T ss_pred ceeecceeeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcc
Confidence 78889998765434343 34455889999999999998875 799999999887766554433322
Q ss_pred -------------EEEecCCCc-eEEEEeCCC----------------------------------eEEEEEcCCCccee
Q 008496 361 -------------LDVDWRNNV-SFATSSTDN----------------------------------MIYVCKIGENRPIK 392 (563)
Q Consensus 361 -------------~~~~~~~~~-~~~~~~~d~----------------------------------~i~~~~~~~~~~~~ 392 (563)
..+.|.++. .++.++.++ .|++|++.......
T Consensus 163 ~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~ 242 (723)
T 1xfd_A 163 SDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDL 242 (723)
T ss_dssp CCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCE
T ss_pred cceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeE
Confidence 568887664 455554332 78999998776555
Q ss_pred eecCC------CcceeEEEECCCCCEEEEEeC----CCcEEEEeCCCCceeeeeccc-CCCE----EEEEEccCCCCCCC
Q 008496 393 TFAGH------QGEVNCVKWDPTGSLLASCSD----DVTAKIWNMKQDKYVHDLREH-SKEI----YTIRWSPTGSGTNN 457 (563)
Q Consensus 393 ~~~~h------~~~i~~~~~~~~~~~las~s~----dg~i~iwd~~~~~~~~~~~~~-~~~i----~~~~~~p~~~~~~~ 457 (563)
.+..+ ...+.+++|+|||++|++.+. +..|++||+.+++....+..+ ...+ ..++|+|+|..
T Consensus 243 ~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~--- 319 (723)
T 1xfd_A 243 EMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRK--- 319 (723)
T ss_dssp ECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCS---
T ss_pred EeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCe---
Confidence 55554 567899999999999877653 367999999988876554433 3333 37899998852
Q ss_pred CCCcEEEEEEeCCC------eEEEEe-CCCCe--EEEEecCCCCCEEE-EEEcCCCCEEEEEeCC---CcEEEEecCCCe
Q 008496 458 PNQQLILASASFDS------TVKLWD-VELGK--LLYSLNGHREPVYS-LAFSPTGEYLASGSLD---KSMHIWSLKEGK 524 (563)
Q Consensus 458 ~~~~~~l~s~s~dg------~i~iwd-~~~~~--~~~~~~~h~~~i~~-l~~spdg~~lasgs~d---g~v~iw~~~~~~ 524 (563)
++++++..++ .|.+|| ...+. +...+..+...+.. ++|||||++|+..+.+ +.++||++....
T Consensus 320 ----l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~ 395 (723)
T 1xfd_A 320 ----FFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVG 395 (723)
T ss_dssp ----EEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSST
T ss_pred ----EEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCC
Confidence 2333466777 577777 34443 14455544444554 6999999999866655 789999986421
Q ss_pred --eEEEEec----CCCEEEEEEcCCCCEEEEEECC
Q 008496 525 --IVKTYTG----NGGIFEVCWNKEGDKIAACFAN 553 (563)
Q Consensus 525 --~~~~~~~----~~~i~~l~w~~~g~~la~~~~~ 553 (563)
....+.. ...+..++|+|||++|++.+.+
T Consensus 396 ~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~~ 430 (723)
T 1xfd_A 396 NFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEG 430 (723)
T ss_dssp TCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCS
T ss_pred CCCcceecccccCCCCeEEEEECCCCCEEEEEccC
Confidence 2233332 3457899999999999886543
No 136
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.93 E-value=1.9e-23 Score=219.48 Aligned_cols=294 Identities=14% Similarity=0.147 Sum_probs=222.1
Q ss_pred eeEec-CCCCceEEEEECCCCCEEEEeeCCCcEEEEec--CCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECC
Q 008496 208 VTILE-GHTSEVCACAWSPAGSLLASGSGDSTARIWTI--ADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG 284 (563)
Q Consensus 208 ~~~l~-~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~ 284 (563)
+.++. +|. +++++|+|+|++|++++.|++|++||+ .++. .+..+. ....+..++|+|
T Consensus 172 ~~~i~~g~~--~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~-------------~~~~i~-----~g~~p~~va~sp 231 (543)
T 1nir_A 172 VKVIDTGYA--VHISRMSASGRYLLVIGRDARIDMIDLWAKEPT-------------KVAEIK-----IGIEARSVESSK 231 (543)
T ss_dssp EEEEECSTT--EEEEEECTTSCEEEEEETTSEEEEEETTSSSCE-------------EEEEEE-----CCSEEEEEEECC
T ss_pred EEEEecCcc--cceEEECCCCCEEEEECCCCeEEEEECcCCCCc-------------EEEEEe-----cCCCcceEEeCC
Confidence 34455 443 889999999999999999999999998 4322 111121 134578999999
Q ss_pred ----CCCEEEEEeC-CCeEEEEEcC-CceeEeecc----------CCC-CEEEEEeCCCCCE-EEEeeCCCcEEEEECCC
Q 008496 285 ----EGTLLATGSY-DGQARIWSTN-GDLKCTLSK----------HKG-PIFSLKWNKKGDY-LLTGSCDKTAIVWDVKT 346 (563)
Q Consensus 285 ----~g~~l~sg~~-dg~i~vw~~~-~~~~~~~~~----------h~~-~V~~l~~~~~~~~-l~s~s~D~~v~iwd~~~ 346 (563)
+|++++++++ ++.|.+||.. ++...++.. |.. .+.++.++|++.. +++...+++|.+||..+
T Consensus 232 ~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~ 311 (543)
T 1nir_A 232 FKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKD 311 (543)
T ss_dssp STTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTT
T ss_pred CcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecC
Confidence 9999999885 8999999975 344444443 333 6899999998765 55677789999999987
Q ss_pred CceeE--EeeecccCeEEEecCCCce--EEEEeCCCeEEEEEcCCCcceeeecC----CCcceeEEEECCC-CCEEEEEe
Q 008496 347 EEWKQ--QFEFHSGPTLDVDWRNNVS--FATSSTDNMIYVCKIGENRPIKTFAG----HQGEVNCVKWDPT-GSLLASCS 417 (563)
Q Consensus 347 ~~~~~--~~~~~~~~~~~~~~~~~~~--~~~~~~d~~i~~~~~~~~~~~~~~~~----h~~~i~~~~~~~~-~~~las~s 417 (563)
.+... .+. +...+.++.|..+.. ++++..++.|.+||..+++.+..+.. |.+....+ ++|+ +.++++++
T Consensus 312 ~~~l~~~~i~-~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~ 389 (543)
T 1nir_A 312 IDNLTVTSIG-AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSH 389 (543)
T ss_dssp SSSCEEEEEE-CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEB
T ss_pred CCcceeEEec-cCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEecc
Confidence 65443 222 333455667765543 34566789999999999988877764 55444333 4677 67778876
Q ss_pred -CCCcEEEEeCCC-------CceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEe-------CCCeEEEEeCCCCe
Q 008496 418 -DDVTAKIWNMKQ-------DKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASAS-------FDSTVKLWDVELGK 482 (563)
Q Consensus 418 -~dg~i~iwd~~~-------~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s-------~dg~i~iwd~~~~~ 482 (563)
.|++|.+||+.+ .+++.++..|...+..++++|++. .|.+++ .+++|.+||+.+++
T Consensus 390 ~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~---------~l~v~~~~~~~~~~~~~v~v~d~~~~~ 460 (543)
T 1nir_A 390 LGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSS---------HLYVDTTFNPDARISQSVAVFDLKNLD 460 (543)
T ss_dssp SSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCC---------EEEECCTTCSSHHHHTCEEEEETTCTT
T ss_pred CCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCC---------cEEEecCCCCCcccCceEEEEECCCCC
Confidence 689999999988 888999999988889999999986 566665 27799999999887
Q ss_pred EE-EEe--------cCCCCCEEEEEEcCCCCEEEEEe-----CCCcEEEEecCCCeeEEEEecC
Q 008496 483 LL-YSL--------NGHREPVYSLAFSPTGEYLASGS-----LDKSMHIWSLKEGKIVKTYTGN 532 (563)
Q Consensus 483 ~~-~~~--------~~h~~~i~~l~~spdg~~lasgs-----~dg~v~iw~~~~~~~~~~~~~~ 532 (563)
.. ..+ ..+...+..+.|+|||++|.++. .|+.|.|||.++++++++++..
T Consensus 461 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~~ 524 (543)
T 1nir_A 461 AKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDP 524 (543)
T ss_dssp SCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECCT
T ss_pred CCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeecCC
Confidence 76 333 34567899999999999988652 4799999999999999998753
No 137
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.93 E-value=4.4e-24 Score=234.48 Aligned_cols=277 Identities=13% Similarity=0.107 Sum_probs=208.6
Q ss_pred CCCeEEEEECCCCCEEEEEeC-CC-----eEEEEEcCCc-eeEeeccCCC------------------------CEEEEE
Q 008496 274 SKDVTTLDWNGEGTLLATGSY-DG-----QARIWSTNGD-LKCTLSKHKG------------------------PIFSLK 322 (563)
Q Consensus 274 ~~~V~~l~~s~~g~~l~sg~~-dg-----~i~vw~~~~~-~~~~~~~h~~------------------------~V~~l~ 322 (563)
...|.+++|||||++|++++. || .|++|+..+. ....+..+.. .|.+++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 356899999999999999998 88 8999998654 4444444332 378899
Q ss_pred eCCCCCEEEEeeCCCcEEEEECCCCc--eeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcc
Q 008496 323 WNKKGDYLLTGSCDKTAIVWDVKTEE--WKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGE 400 (563)
Q Consensus 323 ~~~~~~~l~s~s~D~~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~ 400 (563)
|+|+|++|++++. ++|++||+.++. ....+..+...+..+.|.++...+....++.|++|++..+........+...
T Consensus 116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g~~~~~~~~~~~~ 194 (741)
T 2ecf_A 116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRGRNLWVIDLASGRQMQLTADGSTT 194 (741)
T ss_dssp ECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEETTEEEEEETTTTEEEECCCCCCSS
T ss_pred ECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeCCcEEEEecCCCCEEEeccCCccc
Confidence 9999999999886 999999998872 2334555667788899987766544445679999999887765554444332
Q ss_pred ----------------eeEEEECCCCCEEEEEeCCC---------------------------------cEEEEeCCC-C
Q 008496 401 ----------------VNCVKWDPTGSLLASCSDDV---------------------------------TAKIWNMKQ-D 430 (563)
Q Consensus 401 ----------------i~~~~~~~~~~~las~s~dg---------------------------------~i~iwd~~~-~ 430 (563)
+.+++|+|||+.|++++.|+ .|.+||+.+ +
T Consensus 195 ~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~ 274 (741)
T 2ecf_A 195 IGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQA 274 (741)
T ss_dssp EEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTC
T ss_pred eeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCC
Confidence 47899999999999988765 788999988 7
Q ss_pred ceeeeec--ccCCCEEEEEEccCCCCCCCCCCcEEEEEEe-----CCCeEEEEeCCCCeEEEEecCCCC----CEEEEEE
Q 008496 431 KYVHDLR--EHSKEIYTIRWSPTGSGTNNPNQQLILASAS-----FDSTVKLWDVELGKLLYSLNGHRE----PVYSLAF 499 (563)
Q Consensus 431 ~~~~~~~--~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s-----~dg~i~iwd~~~~~~~~~~~~h~~----~i~~l~~ 499 (563)
+...... .|...+..++| |+|. .|+.++ .+..|++||+.++++...+..+.. .+.+++|
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~-pDg~---------~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~ 344 (741)
T 2ecf_A 275 QTQWIDLGKEQDIYLARVNW-RDPQ---------HLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRF 344 (741)
T ss_dssp CCEEECCCSCSSEEEEEEEE-EETT---------EEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEE
T ss_pred ceEEecCCCCcceEEEEEEe-CCCC---------EEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEE
Confidence 6544332 47778999999 9986 344443 357899999999988766655443 4568999
Q ss_pred cCCCCEEEEEeCCCcEEEEecC-CCeeEEEEec-CCCEEEE-EEcCCCCEEEEEEC-CC--eEEEEEee
Q 008496 500 SPTGEYLASGSLDKSMHIWSLK-EGKIVKTYTG-NGGIFEV-CWNKEGDKIAACFA-NH--TVCVLDFR 562 (563)
Q Consensus 500 spdg~~lasgs~dg~v~iw~~~-~~~~~~~~~~-~~~i~~l-~w~~~g~~la~~~~-~~--~v~v~~~~ 562 (563)
+|||+++++++.||.++||.+. +++ ...+.. ...+..+ +|+|+|+.|+++.. ++ .+.||++.
T Consensus 345 spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~ 412 (741)
T 2ecf_A 345 LDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVP 412 (741)
T ss_dssp CTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEE
T ss_pred CCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEE
Confidence 9999999999999988888765 445 555543 4457776 59999998876654 44 78888874
No 138
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.93 E-value=1.1e-22 Score=202.16 Aligned_cols=268 Identities=12% Similarity=0.134 Sum_probs=210.8
Q ss_pred CCeEEEEECCCCCEEEEEeC-------CCeEEEEEcCC-ceeEeeccCCCCEEEEEeCCCCCEEEE-eeCCCcEEEEECC
Q 008496 275 KDVTTLDWNGEGTLLATGSY-------DGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLT-GSCDKTAIVWDVK 345 (563)
Q Consensus 275 ~~V~~l~~s~~g~~l~sg~~-------dg~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s-~s~D~~v~iwd~~ 345 (563)
..+..++|+|+|+++++++. ++.|.+||... .....+.. ...+.+++|+|+|++++. ...++.|.+||+.
T Consensus 41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~ 119 (353)
T 3vgz_A 41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAIDAK 119 (353)
T ss_dssp SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEeCC
Confidence 45789999999999888875 46899999764 44444443 344678999999996654 5557999999999
Q ss_pred CCceeEEeeecccC---------eEEEecCCC-c-eEEEE-eCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEE
Q 008496 346 TEEWKQQFEFHSGP---------TLDVDWRNN-V-SFATS-STDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLL 413 (563)
Q Consensus 346 ~~~~~~~~~~~~~~---------~~~~~~~~~-~-~~~~~-~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l 413 (563)
+++....+..+... +..+.|.++ . .+++. +.++.|++|+..+.+.+..+..+...+.+++|+|+++.|
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l 199 (353)
T 3vgz_A 120 TGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRL 199 (353)
T ss_dssp TCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEE
T ss_pred CCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEE
Confidence 99988777664322 455666543 2 34444 357899999999888888887666678899999999999
Q ss_pred EEEeCCCcEEEEeCCCCceeeeecc----cCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecC
Q 008496 414 ASCSDDVTAKIWNMKQDKYVHDLRE----HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG 489 (563)
Q Consensus 414 as~s~dg~i~iwd~~~~~~~~~~~~----~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 489 (563)
++++.++.|.+||..+++.+..+.. +...+..++|+|++. .++++...++.|.+||+.+++.+..+..
T Consensus 200 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~--------~l~~~~~~~~~v~~~d~~~~~~~~~~~~ 271 (353)
T 3vgz_A 200 YTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQ--------RAFITDSKAAEVLVVDTRNGNILAKVAA 271 (353)
T ss_dssp EEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTT--------EEEEEESSSSEEEEEETTTCCEEEEEEC
T ss_pred EEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCC--------EEEEEeCCCCEEEEEECCCCcEEEEEEc
Confidence 9999999999999999988776654 455678899999875 3455555669999999999998877764
Q ss_pred CCCCEEEEEEcCCCCEEEEEe-CCCcEEEEecCCCeeEEEEecCCCEEEEEEcCCCCEEEEEECC
Q 008496 490 HREPVYSLAFSPTGEYLASGS-LDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFAN 553 (563)
Q Consensus 490 h~~~i~~l~~spdg~~lasgs-~dg~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~g~~la~~~~~ 553 (563)
.. + ..++|+|||+++++++ .++.|.+||+.+++++..+.....+..++|+|+|++|+++..+
T Consensus 272 ~~-~-~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 272 PE-S-LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPTHPNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp SS-C-CCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCSEEEEEEECTTSCEEEEEEEC
T ss_pred CC-C-ceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCCCCCeEEEcCCCCEEEEEEcc
Confidence 43 2 5799999999665555 6899999999999999988877788999999999988777655
No 139
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.93 E-value=9.6e-23 Score=200.96 Aligned_cols=270 Identities=11% Similarity=0.108 Sum_probs=198.6
Q ss_pred ECCCC-CEEEEEeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEEEEeeC-CCcEEEEECCCCce-eEEeeecc
Q 008496 282 WNGEG-TLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSC-DKTAIVWDVKTEEW-KQQFEFHS 357 (563)
Q Consensus 282 ~s~~g-~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-D~~v~iwd~~~~~~-~~~~~~~~ 357 (563)
|.+++ ..+++++.++.|++||.. ++....+..+..++ .++|+|+|+++++++. ++.|.+||+.+++. ...+..+.
T Consensus 5 ~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~ 83 (331)
T 3u4y_A 5 FQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQ 83 (331)
T ss_dssp --CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECS
T ss_pred EcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCC
Confidence 44444 457788889999999976 55555666666667 9999999997776665 88999999999887 66666666
Q ss_pred cCeEEEecCCCce-EEEEeCC-C--eEEEEEcCCCcceeeecCCCcceeEEEECCCCCE-EEEEeCCCc-EEEEeCCCCc
Q 008496 358 GPTLDVDWRNNVS-FATSSTD-N--MIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSL-LASCSDDVT-AKIWNMKQDK 431 (563)
Q Consensus 358 ~~~~~~~~~~~~~-~~~~~~d-~--~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~-las~s~dg~-i~iwd~~~~~ 431 (563)
.+...+.|.++.. ++++..+ + .|++|++...+.+..+..+ ....+++|+|+|++ ++++..++. |.+|++....
T Consensus 84 ~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g 162 (331)
T 3u4y_A 84 SSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAISPNGNGLILIDRSSANTVRRFKIDADG 162 (331)
T ss_dssp SCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTC
T ss_pred CCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEECCCCCEEEEEecCCCceEEEEEECCCC
Confidence 6655477765544 4443333 2 8999999988887777644 34689999999985 455566688 9999987644
Q ss_pred eee----eecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeE---EEEecCCCCCEEEEEEcCCCC
Q 008496 432 YVH----DLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL---LYSLNGHREPVYSLAFSPTGE 504 (563)
Q Consensus 432 ~~~----~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~---~~~~~~h~~~i~~l~~spdg~ 504 (563)
.+. ...........++|+|++. .+++++..++.|++||+.+++. +..+..+ ..+..++|+|||+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~spdg~--------~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~-~~~~~~~~spdg~ 233 (331)
T 3u4y_A 163 VLFDTGQEFISGGTRPFNITFTPDGN--------FAFVANLIGNSIGILETQNPENITLLNAVGTN-NLPGTIVVSRDGS 233 (331)
T ss_dssp CEEEEEEEEECSSSSEEEEEECTTSS--------EEEEEETTTTEEEEEECSSTTSCEEEEEEECS-SCCCCEEECTTSS
T ss_pred cEeecCCccccCCCCccceEECCCCC--------EEEEEeCCCCeEEEEECCCCcccceeeeccCC-CCCceEEECCCCC
Confidence 331 1123345678999999875 3566677899999999998887 7777644 5668999999999
Q ss_pred EEEEEe-CCCcEEEEecCCCee--EEEEecC--------CCEEEEEEcCCCCEEEEEEC-CCeEEEEEee
Q 008496 505 YLASGS-LDKSMHIWSLKEGKI--VKTYTGN--------GGIFEVCWNKEGDKIAACFA-NHTVCVLDFR 562 (563)
Q Consensus 505 ~lasgs-~dg~v~iw~~~~~~~--~~~~~~~--------~~i~~l~w~~~g~~la~~~~-~~~v~v~~~~ 562 (563)
+|++++ .++.|.+||+.++++ +..+... .....++|+|||++|+++.. ++.|.|||+.
T Consensus 234 ~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~ 303 (331)
T 3u4y_A 234 TVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTIS 303 (331)
T ss_dssp EEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred EEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEec
Confidence 776654 578899999999987 4444322 12245899999998876655 5699999974
No 140
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.93 E-value=8.2e-24 Score=204.28 Aligned_cols=253 Identities=16% Similarity=0.203 Sum_probs=191.7
Q ss_pred EEeCCCeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCC-CceeEEeeecc-cCeEEEecCCC
Q 008496 291 TGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT-EEWKQQFEFHS-GPTLDVDWRNN 368 (563)
Q Consensus 291 sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~-~~~~~~~~~~~-~~~~~~~~~~~ 368 (563)
+++.++.|++|+..+.....+..|...|.+++|+|+|++|++++ ++.|.+||+.+ ++.......+. ..+.++.|.++
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spd 95 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPD 95 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTT
T ss_pred CCCcceeEEEEeCCCCceeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCC
Confidence 34678999999988776667778999999999999999999876 88999999998 77766554442 45667788765
Q ss_pred c-eEEEEe--C--CCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEE-EEeCCCcEEEEeCCC-CceeeeecccCC
Q 008496 369 V-SFATSS--T--DNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLA-SCSDDVTAKIWNMKQ-DKYVHDLREHSK 441 (563)
Q Consensus 369 ~-~~~~~~--~--d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~la-s~s~dg~i~iwd~~~-~~~~~~~~~~~~ 441 (563)
. .++.++ . ...|+.++..... ...+..+. .+.+++|+|+++.|+ +++.|+.++||++.. ......+..+..
T Consensus 96 g~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 173 (297)
T 2ojh_A 96 GALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNL-PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEG 173 (297)
T ss_dssp SSEEEEEECTTTSSCEEEEEETTCCC-CEECCSSS-SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSS
T ss_pred CCEEEEEEeCCCCcceEEEEECCCCc-eEEeecCC-CccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCC
Confidence 4 455555 2 3456666655544 33444333 488999999999877 788899999998632 233456667888
Q ss_pred CEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCC-CCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCC--------
Q 008496 442 EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE-LGKLLYSLNGHREPVYSLAFSPTGEYLASGSLD-------- 512 (563)
Q Consensus 442 ~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~-~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~d-------- 512 (563)
.+.++.|+|++. .+++++..++.++||++. .+..+..+..|...+.+++|+|+|++|++++.+
T Consensus 174 ~~~~~~~s~dg~--------~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~ 245 (297)
T 2ojh_A 174 RNDGPDYSPDGR--------WIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPR 245 (297)
T ss_dssp CEEEEEECTTSS--------EEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCS
T ss_pred ccccceECCCCC--------EEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccc
Confidence 899999999875 344455569999999986 456667788888889999999999999988766
Q ss_pred ---CcEEEEecCCCeeEEEE---ecCCCEEEEEEcCCCCEEEEEECCC
Q 008496 513 ---KSMHIWSLKEGKIVKTY---TGNGGIFEVCWNKEGDKIAACFANH 554 (563)
Q Consensus 513 ---g~v~iw~~~~~~~~~~~---~~~~~i~~l~w~~~g~~la~~~~~~ 554 (563)
+.|.+||+.+++..... .....+..++|+|+|+.|++++.+.
T Consensus 246 ~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 246 DLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp SEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred cCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 56999999988754333 2345688899999999999886653
No 141
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.92 E-value=1.8e-22 Score=199.58 Aligned_cols=292 Identities=12% Similarity=0.175 Sum_probs=196.2
Q ss_pred EEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeCC-CeEEEEEcC---
Q 008496 229 LLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD-GQARIWSTN--- 304 (563)
Q Consensus 229 ~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~d-g~i~vw~~~--- 304 (563)
++++++.|+.|++|++..... .. .+... .+...+.+++|+|+|++|++++.+ +.|++|+.+
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~--------~~--~~~~~-----~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~ 71 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGA--------LT--LTQVV-----DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDD 71 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSC--------EE--EEEEE-----ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTT
T ss_pred EEEeCCCCCeEEEEEECCCCc--------EE--EeeeE-----ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCC
Confidence 455557899999999853110 00 11111 123467889999999999998887 999999986
Q ss_pred Ccee--EeeccCCCCEEEEEeCCCCCEEEEeeC-CCcEEEEECC---CCceeEEeeecccCeEEEecCCCc-eEEEEe-C
Q 008496 305 GDLK--CTLSKHKGPIFSLKWNKKGDYLLTGSC-DKTAIVWDVK---TEEWKQQFEFHSGPTLDVDWRNNV-SFATSS-T 376 (563)
Q Consensus 305 ~~~~--~~~~~h~~~V~~l~~~~~~~~l~s~s~-D~~v~iwd~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~ 376 (563)
+... ..+..+. .+..++|+|++++|++++. ++.|.+||+. +......+... ..+..+.|.++. .+++++ .
T Consensus 72 ~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~ 149 (343)
T 1ri6_A 72 GALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALK 149 (343)
T ss_dssp CCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGG
T ss_pred CceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECCCCCEEEEecCC
Confidence 2322 2344333 7789999999998876665 8899999994 33333333322 345667776553 344444 8
Q ss_pred CCeEEEEEcCC-Cccee----eecC-CCcceeEEEECCCCCEEEE-EeCCCcEEEEeCCC--Cce--eeeec---cc---
Q 008496 377 DNMIYVCKIGE-NRPIK----TFAG-HQGEVNCVKWDPTGSLLAS-CSDDVTAKIWNMKQ--DKY--VHDLR---EH--- 439 (563)
Q Consensus 377 d~~i~~~~~~~-~~~~~----~~~~-h~~~i~~~~~~~~~~~las-~s~dg~i~iwd~~~--~~~--~~~~~---~~--- 439 (563)
++.|++|++.. .+... .+.. ....+.+++|+|+++++++ +..++.|++|++.. +.. ...+. ..
T Consensus 150 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~ 229 (343)
T 1ri6_A 150 QDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSD 229 (343)
T ss_dssp GTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCS
T ss_pred CCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccc
Confidence 89999999986 43321 2232 2346889999999997654 45799999999953 332 22221 11
Q ss_pred CCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCC--C--CeEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCCc
Q 008496 440 SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE--L--GKLLYSLNGHREPVYSLAFSPTGEYLASGS-LDKS 514 (563)
Q Consensus 440 ~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~--~--~~~~~~~~~h~~~i~~l~~spdg~~lasgs-~dg~ 514 (563)
...+..++|+|++. .+++++..++.|++||+. . .+.+..+..+.. +.+++|+|+|++|++++ .++.
T Consensus 230 ~~~~~~i~~s~dg~--------~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~ 300 (343)
T 1ri6_A 230 TRWAADIHITPDGR--------HLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHH 300 (343)
T ss_dssp CCCEEEEEECTTSS--------EEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCE
T ss_pred cCCccceEECCCCC--------EEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCe
Confidence 23567899999875 355577789999999998 3 344555554444 88999999999988887 6899
Q ss_pred EEEEe--cCCCe--eEEEEecCCCEEEEEEcCCCCE
Q 008496 515 MHIWS--LKEGK--IVKTYTGNGGIFEVCWNKEGDK 546 (563)
Q Consensus 515 v~iw~--~~~~~--~~~~~~~~~~i~~l~w~~~g~~ 546 (563)
|.+|+ ..+++ .+..+........++|.++-+.
T Consensus 301 v~v~~~d~~~g~~~~~~~~~~g~~p~~i~~~~~~~~ 336 (343)
T 1ri6_A 301 ISVYEIVGEQGLLHEKGRYAVGQGPMWVVVNAHEGG 336 (343)
T ss_dssp EEEEEEETTTTEEEEEEEEECSSSCCEEEEEEEC--
T ss_pred EEEEEEcCCCceeeEccccccCCCCeeEEEEcccCC
Confidence 99994 45664 3455555456678888876543
No 142
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.92 E-value=1.8e-22 Score=199.62 Aligned_cols=265 Identities=11% Similarity=0.187 Sum_probs=189.2
Q ss_pred EEEEEeCCCeEEEEEcC--Ccee-EeeccCCCCEEEEEeCCCCCEEEEeeCC-CcEEEEECC--CCcee--EEeeecccC
Q 008496 288 LLATGSYDGQARIWSTN--GDLK-CTLSKHKGPIFSLKWNKKGDYLLTGSCD-KTAIVWDVK--TEEWK--QQFEFHSGP 359 (563)
Q Consensus 288 ~l~sg~~dg~i~vw~~~--~~~~-~~~~~h~~~V~~l~~~~~~~~l~s~s~D-~~v~iwd~~--~~~~~--~~~~~~~~~ 359 (563)
++++++.++.|++|+.+ +... .....|...+.+++|+|+|++|++++.+ +.|.+|++. ++... ..+.... .
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~ 85 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-S 85 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-C
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-C
Confidence 44555789999999985 3322 2234577788999999999999988887 999999987 55543 3333333 5
Q ss_pred eEEEecCCCce-E-EEEeCCCeEEEEEcC---CCcceeeecCCCcceeEEEECCCCCEEEEEe-CCCcEEEEeCCC-Cce
Q 008496 360 TLDVDWRNNVS-F-ATSSTDNMIYVCKIG---ENRPIKTFAGHQGEVNCVKWDPTGSLLASCS-DDVTAKIWNMKQ-DKY 432 (563)
Q Consensus 360 ~~~~~~~~~~~-~-~~~~~d~~i~~~~~~---~~~~~~~~~~h~~~i~~~~~~~~~~~las~s-~dg~i~iwd~~~-~~~ 432 (563)
+..+.|.++.. + +++..++.|.+|++. ....+..+..+ ..+.+++|+|++++|++++ .++.|++||+.+ ++.
T Consensus 86 ~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~ 164 (343)
T 1ri6_A 86 LTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHL 164 (343)
T ss_dssp CSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCE
T ss_pred CcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecCCCce
Confidence 66777765543 4 444568899999994 33444555443 3588999999999888777 899999999987 543
Q ss_pred ee----eecc-cCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC--CeE--EEEec----CC--CCCEEEE
Q 008496 433 VH----DLRE-HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL--GKL--LYSLN----GH--REPVYSL 497 (563)
Q Consensus 433 ~~----~~~~-~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~--~~~--~~~~~----~h--~~~i~~l 497 (563)
.. .+.. ....+..++|+|++. .+++++..++.|++|++.. ++. ...+. ++ ...+..+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~pdg~--------~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i 236 (343)
T 1ri6_A 165 VAQDPAEVTTVEGAGPRHMVFHPNEQ--------YAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADI 236 (343)
T ss_dssp EEEEEEEEECSTTCCEEEEEECTTSS--------EEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEE
T ss_pred eeecccccccCCCCCcceEEECCCCC--------EEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccce
Confidence 22 2222 334678899999875 3555666899999999953 432 22222 11 2356789
Q ss_pred EEcCCCCEEE-EEeCCCcEEEEecC--C--CeeEEEEecCCCEEEEEEcCCCCEEEEEE-CCCeEEEEEee
Q 008496 498 AFSPTGEYLA-SGSLDKSMHIWSLK--E--GKIVKTYTGNGGIFEVCWNKEGDKIAACF-ANHTVCVLDFR 562 (563)
Q Consensus 498 ~~spdg~~la-sgs~dg~v~iw~~~--~--~~~~~~~~~~~~i~~l~w~~~g~~la~~~-~~~~v~v~~~~ 562 (563)
+|+|||++|+ ++..++.|.+|++. + .+.+..+.....+..++|+|+|+.|+++. .++.+.||++.
T Consensus 237 ~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 237 HITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred EECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCccceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 9999998887 45578999999998 3 34555565555688999999999988887 57899999664
No 143
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.92 E-value=3.8e-22 Score=196.69 Aligned_cols=276 Identities=9% Similarity=0.056 Sum_probs=196.0
Q ss_pred EECCCC-CEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeC-CCeEE
Q 008496 222 AWSPAG-SLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY-DGQAR 299 (563)
Q Consensus 222 ~~sp~~-~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~-dg~i~ 299 (563)
.|.+++ .++++++.++.|++||+.+++.. .... .....+ .++|+|+|+++++++. ++.|+
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~-------------~~~~----~~~~~~-~~~~s~dg~~l~~~~~~~~~i~ 65 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLEIL-------------NQIT----LGYDFV-DTAITSDCSNVVVTSDFCQTLV 65 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCCEE-------------EEEE----CCCCEE-EEEECSSSCEEEEEESTTCEEE
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCccccee-------------eeEE----ccCCcc-eEEEcCCCCEEEEEeCCCCeEE
Confidence 456654 45788889999999998765421 1111 113345 9999999997776665 89999
Q ss_pred EEEcCC-ce-eEeeccCCCCEEEEEeCCCCCEEEEeeCCC---cEEEEECCCCceeEEeeecccCeEEEecCCCc--eEE
Q 008496 300 IWSTNG-DL-KCTLSKHKGPIFSLKWNKKGDYLLTGSCDK---TAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV--SFA 372 (563)
Q Consensus 300 vw~~~~-~~-~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~---~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 372 (563)
+|+... .. ...+..+..+..+++|+|+|++|+++..++ .|.+||+.+++....+.... ....+.|.++. .++
T Consensus 66 ~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~ 144 (331)
T 3u4y_A 66 QIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPY-DAVGIAISPNGNGLIL 144 (331)
T ss_dssp EEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCT-TEEEEEECTTSSCEEE
T ss_pred EEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCC-CccceEECCCCCEEEE
Confidence 999864 44 556666777766699999999999665553 89999999998877766543 34677776653 455
Q ss_pred EEeCCCe-EEEEEcCCCccee----eecCCCcceeEEEECCCCCEE-EEEeCCCcEEEEeCCCCce---eeeecccCCCE
Q 008496 373 TSSTDNM-IYVCKIGENRPIK----TFAGHQGEVNCVKWDPTGSLL-ASCSDDVTAKIWNMKQDKY---VHDLREHSKEI 443 (563)
Q Consensus 373 ~~~~d~~-i~~~~~~~~~~~~----~~~~h~~~i~~~~~~~~~~~l-as~s~dg~i~iwd~~~~~~---~~~~~~~~~~i 443 (563)
+...++. |.+|++.....+. ........+.+++|+|+|+++ +++..++.|++||+.+++. +..+.. ...+
T Consensus 145 ~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~-~~~~ 223 (331)
T 3u4y_A 145 IDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT-NNLP 223 (331)
T ss_dssp EEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC-SSCC
T ss_pred EecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC-CCCC
Confidence 6666677 9999987544321 111234457899999999955 5555789999999998887 666654 3566
Q ss_pred EEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeE--EEEecCC----CCC---EEEEEEcCCCCEEEEEe-CCC
Q 008496 444 YTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL--LYSLNGH----REP---VYSLAFSPTGEYLASGS-LDK 513 (563)
Q Consensus 444 ~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~h----~~~---i~~l~~spdg~~lasgs-~dg 513 (563)
..++|+|++. .++++...++.|.+||+.+++. +..+..+ ..+ +..++|+|||++|++++ .++
T Consensus 224 ~~~~~spdg~--------~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~ 295 (331)
T 3u4y_A 224 GTIVVSRDGS--------TVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISR 295 (331)
T ss_dssp CCEEECTTSS--------EEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTT
T ss_pred ceEEECCCCC--------EEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCC
Confidence 7899999875 3445555688999999999887 4443322 222 35589999999886655 467
Q ss_pred cEEEEecCCCee
Q 008496 514 SMHIWSLKEGKI 525 (563)
Q Consensus 514 ~v~iw~~~~~~~ 525 (563)
.|.+||+.+..+
T Consensus 296 ~v~v~d~~~~~~ 307 (331)
T 3u4y_A 296 ELKVFTISGKVV 307 (331)
T ss_dssp EEEEEETTSCEE
T ss_pred cEEEEEecCCcc
Confidence 999999986543
No 144
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.91 E-value=7.8e-23 Score=197.39 Aligned_cols=241 Identities=18% Similarity=0.279 Sum_probs=178.2
Q ss_pred CceeEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCC-CCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECC
Q 008496 206 SDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIAD-GTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG 284 (563)
Q Consensus 206 ~~~~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~ 284 (563)
.....+..|...|.+++|+|++++|++++ ++.|++|++.+ +.... ... ......|.+++|+|
T Consensus 32 ~~~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~-------------~~~---~~~~~~~~~~~~sp 94 (297)
T 2ojh_A 32 RKMRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEK-------------VDT---GFATICNNDHGISP 94 (297)
T ss_dssp TEEEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEE-------------CCC---TTCCCBCSCCEECT
T ss_pred CceeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceE-------------ecc---ccccccccceEECC
Confidence 34455667889999999999999999986 88999999876 43211 000 11235678899999
Q ss_pred CCCEEEEEeC--CCeEEEE--EcCCceeEeeccCCCCEEEEEeCCCCCEEE-EeeCCCcEEEEECCCCceeEEeeecccC
Q 008496 285 EGTLLATGSY--DGQARIW--STNGDLKCTLSKHKGPIFSLKWNKKGDYLL-TGSCDKTAIVWDVKTEEWKQQFEFHSGP 359 (563)
Q Consensus 285 ~g~~l~sg~~--dg~i~vw--~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~s~D~~v~iwd~~~~~~~~~~~~~~~~ 359 (563)
+|++|++++. ++..+|| +..+.....+..+. .+..++|+|++++|+ +++.|+.+++|++....
T Consensus 95 dg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~----------- 162 (297)
T 2ojh_A 95 DGALYAISDKVEFGKSAIYLLPSTGGTPRLMTKNL-PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDS----------- 162 (297)
T ss_dssp TSSEEEEEECTTTSSCEEEEEETTCCCCEECCSSS-SEEEEEECTTSSEEEEEEEETTEEEEEEEETTT-----------
T ss_pred CCCEEEEEEeCCCCcceEEEEECCCCceEEeecCC-CccceEECCCCCEEEEEECCCCceEEEEEECCC-----------
Confidence 9999999993 3455555 55554444554444 489999999999887 78889999999753211
Q ss_pred eEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEe-CCCcEEEEeCC-CCceeeeec
Q 008496 360 TLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS-DDVTAKIWNMK-QDKYVHDLR 437 (563)
Q Consensus 360 ~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s-~dg~i~iwd~~-~~~~~~~~~ 437 (563)
.....+..|...+.+++|+|++++|+.++ .++.++||++. .+..+..+.
T Consensus 163 -----------------------------~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~ 213 (297)
T 2ojh_A 163 -----------------------------GVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERIT 213 (297)
T ss_dssp -----------------------------CCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECC
T ss_pred -----------------------------CcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEe
Confidence 01122334667789999999999887766 59999999986 455667777
Q ss_pred ccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCC-----------CeEEEEeCCCCeE--EEEecCCCCCEEEEEEcCCCC
Q 008496 438 EHSKEIYTIRWSPTGSGTNNPNQQLILASASFD-----------STVKLWDVELGKL--LYSLNGHREPVYSLAFSPTGE 504 (563)
Q Consensus 438 ~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~d-----------g~i~iwd~~~~~~--~~~~~~h~~~i~~l~~spdg~ 504 (563)
.|...+..+.|+|++. +|++++.+ +.|++||+.+++. +..+.+|...|.+++|+|||+
T Consensus 214 ~~~~~~~~~~~s~dg~---------~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~ 284 (297)
T 2ojh_A 214 DSAYGDWFPHPSPSGD---------KVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGD 284 (297)
T ss_dssp CCSEEEEEEEECTTSS---------EEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSS
T ss_pred cCCcccCCeEECCCCC---------EEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCC
Confidence 7888899999999885 45555544 5799999988754 455557888899999999999
Q ss_pred EEEEEeCCC
Q 008496 505 YLASGSLDK 513 (563)
Q Consensus 505 ~lasgs~dg 513 (563)
+|++++.+.
T Consensus 285 ~l~~~~~~~ 293 (297)
T 2ojh_A 285 EFAYVRYFP 293 (297)
T ss_dssp EEEEEEECC
T ss_pred EEEEEEecc
Confidence 998887653
No 145
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.91 E-value=1.3e-23 Score=230.15 Aligned_cols=274 Identities=13% Similarity=0.177 Sum_probs=198.1
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEEcCC-ceeEeeccCCC---CEEEEEeCCCCCEEEEeeCC---------CcEEEEE
Q 008496 277 VTTLDWNGEGTLLATGSYDGQARIWSTNG-DLKCTLSKHKG---PIFSLKWNKKGDYLLTGSCD---------KTAIVWD 343 (563)
Q Consensus 277 V~~l~~s~~g~~l~sg~~dg~i~vw~~~~-~~~~~~~~h~~---~V~~l~~~~~~~~l~s~s~D---------~~v~iwd 343 (563)
+.+++|+|||+++++ +.||.|++|+..+ .....+..|.. .|.+++|+|+|++|++++.+ +.+.+||
T Consensus 19 ~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d 97 (723)
T 1xfd_A 19 DPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSK 97 (723)
T ss_dssp CCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEE
T ss_pred ccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEE
Confidence 567899999998776 7899999999764 45555666654 48999999999999998775 6788999
Q ss_pred CCCCceeEEeee---cccCeEEEecCCCc-eEEEEeCCCeEEEEEcCCCcceeeecCCCcce------------------
Q 008496 344 VKTEEWKQQFEF---HSGPTLDVDWRNNV-SFATSSTDNMIYVCKIGENRPIKTFAGHQGEV------------------ 401 (563)
Q Consensus 344 ~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i------------------ 401 (563)
+.+++. ..+.. +...+..+.|.++. .++.++ ++.|++|++..+........+...+
T Consensus 98 ~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~ 175 (723)
T 1xfd_A 98 IPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTH 175 (723)
T ss_dssp SSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSS
T ss_pred CCCCce-EeccCCccccccccccEECCCCCEEEEEE-CCeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCc
Confidence 998876 22322 22235677887665 445444 4899999998877666555544333
Q ss_pred eEEEECCCCCEEEEEeCCC----------------------------------cEEEEeCCCCceeeeeccc------CC
Q 008496 402 NCVKWDPTGSLLASCSDDV----------------------------------TAKIWNMKQDKYVHDLREH------SK 441 (563)
Q Consensus 402 ~~~~~~~~~~~las~s~dg----------------------------------~i~iwd~~~~~~~~~~~~~------~~ 441 (563)
.+++|+|||+.|++++.|+ .|++||+.+++....+..+ ..
T Consensus 176 ~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~ 255 (723)
T 1xfd_A 176 IAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREY 255 (723)
T ss_dssp EEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSE
T ss_pred ceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccc
Confidence 7899999999999987653 7999999888765555543 56
Q ss_pred CEEEEEEccCCCCCCCCCCcEEEEEEe----CCCeEEEEeCCCCeEEEEecC-CCCCEE----EEEEcCCCCEEEE--Ee
Q 008496 442 EIYTIRWSPTGSGTNNPNQQLILASAS----FDSTVKLWDVELGKLLYSLNG-HREPVY----SLAFSPTGEYLAS--GS 510 (563)
Q Consensus 442 ~i~~~~~~p~~~~~~~~~~~~~l~s~s----~dg~i~iwd~~~~~~~~~~~~-h~~~i~----~l~~spdg~~las--gs 510 (563)
.+..+.|+|+|. +|++.+ .+..|++||+.++++...+.. +...+. .++|||||++|+. +.
T Consensus 256 ~~~~~~~SpDg~---------~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~ 326 (723)
T 1xfd_A 256 YITMVKWATSTK---------VAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAI 326 (723)
T ss_dssp EEEEEEESSSSE---------EEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEE
T ss_pred eeEEEEEeCCCe---------EEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEec
Confidence 789999999885 454443 236799999999887665543 333343 7899999998775 45
Q ss_pred CCC------cEEEEe-cCCCe--eEEEEe-cCCCEEE-EEEcCCCCEEEEEECC---CeEEEEEee
Q 008496 511 LDK------SMHIWS-LKEGK--IVKTYT-GNGGIFE-VCWNKEGDKIAACFAN---HTVCVLDFR 562 (563)
Q Consensus 511 ~dg------~v~iw~-~~~~~--~~~~~~-~~~~i~~-l~w~~~g~~la~~~~~---~~v~v~~~~ 562 (563)
.++ .|.+|| ..++. ....+. +...+.. ++|+|||+.|++...+ +.+.||++.
T Consensus 327 ~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~ 392 (723)
T 1xfd_A 327 PQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSAN 392 (723)
T ss_dssp CCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEEC
T ss_pred ccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEe
Confidence 677 577777 34444 033333 3344554 6999999999877665 678888874
No 146
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.91 E-value=3.9e-23 Score=220.40 Aligned_cols=260 Identities=13% Similarity=0.093 Sum_probs=197.3
Q ss_pred CCeEEEEECCCCCEEEEEeC-CCeEEEEEcCCceeEeeccCC-CCEEEEEeCCCCCEEEEeeC---CCcEEEEECCC---
Q 008496 275 KDVTTLDWNGEGTLLATGSY-DGQARIWSTNGDLKCTLSKHK-GPIFSLKWNKKGDYLLTGSC---DKTAIVWDVKT--- 346 (563)
Q Consensus 275 ~~V~~l~~s~~g~~l~sg~~-dg~i~vw~~~~~~~~~~~~h~-~~V~~l~~~~~~~~l~s~s~---D~~v~iwd~~~--- 346 (563)
.+|.+++|+|||+.|++++. ||.++||++++.....+..|. ..|.++.|+|+ +.+++++. +....+|.+..
T Consensus 22 ~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~ 100 (582)
T 3o4h_A 22 VEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRP 100 (582)
T ss_dssp SCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTST
T ss_pred cchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCC
Confidence 46999999999999999887 999999998877666676666 68999999999 67776665 45566665433
Q ss_pred CceeEEeeec-ccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCC----Cc
Q 008496 347 EEWKQQFEFH-SGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDD----VT 421 (563)
Q Consensus 347 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~d----g~ 421 (563)
+... .+... ...+..+.+..+..++++..++.+.+|++.++++......+. .+++|+|||++||+++.+ +.
T Consensus 101 g~~~-~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~~~~~ 176 (582)
T 3o4h_A 101 GEEQ-RLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFFGGGRVS 176 (582)
T ss_dssp TCCE-ECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEEETTEEE
T ss_pred Cccc-cccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEcCCCCeE
Confidence 2222 22111 112334444444444444444555599998776554443332 789999999999988877 78
Q ss_pred EEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCC--eEEEEeCCCCeEEEEecCCCCCEEEEE-
Q 008496 422 AKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDS--TVKLWDVELGKLLYSLNGHREPVYSLA- 498 (563)
Q Consensus 422 i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg--~i~iwd~~~~~~~~~~~~h~~~i~~l~- 498 (563)
|++||+.+++.. .+..|...+..++|+|+|. .|++++.++ .|++||+.+++.. .+.+|...+..++
T Consensus 177 i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~---------~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~ 245 (582)
T 3o4h_A 177 LFTSNLSSGGLR-VFDSGEGSFSSASISPGMK---------VTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRP 245 (582)
T ss_dssp EEEEETTTCCCE-EECCSSCEEEEEEECTTSC---------EEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCC
T ss_pred EEEEcCCCCCce-EeecCCCccccceECCCCC---------EEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhh
Confidence 999999887754 6778888899999999986 567888888 8999999998887 7777877777777
Q ss_pred -------EcCCCCEEEEEeCCCcEEEEecCCCeeEEEEecCCCEEEEEEcCCCCEEEEEECCCe
Q 008496 499 -------FSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHT 555 (563)
Q Consensus 499 -------~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~g~~la~~~~~~~ 555 (563)
|||||.++++++.|+++++|++ |+.... ..+.+.+++|+ +|+.+++++.+.+
T Consensus 246 ~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~~--~~~~v~~~~~s-dg~~l~~~s~~~~ 304 (582)
T 3o4h_A 246 TAITWLGYLPDGRLAVVARREGRSAVFID--GERVEA--PQGNHGRVVLW-RGKLVTSHTSLST 304 (582)
T ss_dssp SEEEEEEECTTSCEEEEEEETTEEEEEET--TEEECC--CSSEEEEEEEE-TTEEEEEEEETTE
T ss_pred ccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeecc--CCCceEEEEec-CCEEEEEEcCCCC
Confidence 9999999999999999999999 776652 33568899999 9998888777644
No 147
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.91 E-value=1.8e-22 Score=220.50 Aligned_cols=278 Identities=10% Similarity=0.102 Sum_probs=201.4
Q ss_pred CceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeCC
Q 008496 216 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD 295 (563)
Q Consensus 216 ~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~d 295 (563)
..|.+++|||+ ..++.+ .|+.+++||+.++.. . ... .....+.+++|||||++|+++ .+
T Consensus 82 ~~v~~~~~spd-~~~~~~-~~~~i~~~d~~~~~~-----------~---~l~----~~~~~~~~~~~SpdG~~la~~-~~ 140 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLF-TQGGLVGFDMLARKV-----------T---YLF----DTNEETASLDFSPVGDRVAYV-RN 140 (706)
T ss_dssp CCCEEEEETTT-TEEEEE-ETTEEEEEETTTTEE-----------E---EEE----CCTTCCTTCEECTTSSEEEEE-ET
T ss_pred cCceeEEECCC-CeEEEE-ECCEEEEEECCCCce-----------E---Ecc----CCcccccCCcCCCCCCEEEEE-EC
Confidence 56899999999 655554 469999999875431 0 111 113457788999999999995 68
Q ss_pred CeEEEEEcCC-----c-eeEeeccCCCC--------------EEEEEeCCCCCEEEEee---------------------
Q 008496 296 GQARIWSTNG-----D-LKCTLSKHKGP--------------IFSLKWNKKGDYLLTGS--------------------- 334 (563)
Q Consensus 296 g~i~vw~~~~-----~-~~~~~~~h~~~--------------V~~l~~~~~~~~l~s~s--------------------- 334 (563)
+.|++|+..+ . .......+... +.++.|+|+|++|++++
T Consensus 141 ~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~ 220 (706)
T 2z3z_A 141 HNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAES 220 (706)
T ss_dssp TEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEE
T ss_pred CeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCce
Confidence 9999999865 3 33333333333 47899999999999987
Q ss_pred ------------CCCcEEEEECCCCceeEEee--ecccCeEEEecCCCce-EEEEeCCC-----eEEEEEcCCCcceeee
Q 008496 335 ------------CDKTAIVWDVKTEEWKQQFE--FHSGPTLDVDWRNNVS-FATSSTDN-----MIYVCKIGENRPIKTF 394 (563)
Q Consensus 335 ------------~D~~v~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~d~-----~i~~~~~~~~~~~~~~ 394 (563)
.+..|.+||+.+++...... .+...+..+.|.++.. +++++.+. .|++|+..++.....+
T Consensus 221 ~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~ 300 (706)
T 2z3z_A 221 KPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTL 300 (706)
T ss_dssp EEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEE
T ss_pred EEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEE
Confidence 44679999999887654432 2344577889976654 56655554 8999999887333332
Q ss_pred c--CCCc---ceeEEEECC--CCCEEEEEeCCCcEEEEeCC-CCceeeeecccCCCEEE-EEEccCCCCCCCCCCcEEEE
Q 008496 395 A--GHQG---EVNCVKWDP--TGSLLASCSDDVTAKIWNMK-QDKYVHDLREHSKEIYT-IRWSPTGSGTNNPNQQLILA 465 (563)
Q Consensus 395 ~--~h~~---~i~~~~~~~--~~~~las~s~dg~i~iwd~~-~~~~~~~~~~~~~~i~~-~~~~p~~~~~~~~~~~~~l~ 465 (563)
. .+.. .+.+++|+| +|+++++++.|+.++||++. ++..+..+..+...+.. +.|+|++. .+++
T Consensus 301 ~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~--------~l~~ 372 (706)
T 2z3z_A 301 FVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGT--------RLYF 372 (706)
T ss_dssp EEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSS--------EEEE
T ss_pred EEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCC--------EEEE
Confidence 2 2222 246789999 99999999999999999876 56667777778777877 79999875 3555
Q ss_pred EEeCCC----eEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCC----CcEEEEecCCCe
Q 008496 466 SASFDS----TVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLD----KSMHIWSLKEGK 524 (563)
Q Consensus 466 s~s~dg----~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~d----g~v~iw~~~~~~ 524 (563)
+++.++ .|..||+.+++ +..+. |...+.+++|||||++|+.+..+ +.|++||+.+++
T Consensus 373 ~~~~~~~~~~~l~~~d~~~~~-~~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 373 ESTEASPLERHFYCIDIKGGK-TKDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp EESSSCTTCBEEEEEETTCCC-CEESC-CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred EecCCCCceEEEEEEEcCCCC-ceecc-CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 666665 67777877765 33444 66779999999999998876433 569999998887
No 148
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.90 E-value=1.2e-21 Score=193.18 Aligned_cols=270 Identities=13% Similarity=0.097 Sum_probs=196.9
Q ss_pred CEEEEEeCCCeEEEEEcCC-ceeEeecc-CCC-CEEEEEeCCCCCEEE-EeeCCCcEEEEECCCCceeEEeeecc-----
Q 008496 287 TLLATGSYDGQARIWSTNG-DLKCTLSK-HKG-PIFSLKWNKKGDYLL-TGSCDKTAIVWDVKTEEWKQQFEFHS----- 357 (563)
Q Consensus 287 ~~l~sg~~dg~i~vw~~~~-~~~~~~~~-h~~-~V~~l~~~~~~~~l~-s~s~D~~v~iwd~~~~~~~~~~~~~~----- 357 (563)
.+|++++.++.|++||... .....+.. +.. .+..++|+|+|++++ +++.++.|.+||+.+++....+....
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~ 81 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV 81 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence 4789999999999999864 44444432 221 478899999998764 55667899999999988877665422
Q ss_pred cCeEEEecCCCc-eEEEEe------------CCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEE
Q 008496 358 GPTLDVDWRNNV-SFATSS------------TDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKI 424 (563)
Q Consensus 358 ~~~~~~~~~~~~-~~~~~~------------~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~i 424 (563)
..+..+.|.++. .++++. .++.|++|++...+.+..+.. ...+.+++|+|++++|+++ ++.|.+
T Consensus 82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~ 158 (337)
T 1pby_B 82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHV 158 (337)
T ss_dssp ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEE
T ss_pred ccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEE
Confidence 134456676554 444443 579999999988877776654 3457889999999988877 689999
Q ss_pred EeCCCCceeeeecccCCCEEEEEEccCCCCCCCC--CCcE---EEEEEeCCC----------eEEEEeCCCCeEE-EEec
Q 008496 425 WNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNP--NQQL---ILASASFDS----------TVKLWDVELGKLL-YSLN 488 (563)
Q Consensus 425 wd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~--~~~~---~l~s~s~dg----------~i~iwd~~~~~~~-~~~~ 488 (563)
||+.+++.+..+..+... ..+.|+|++...... .... ....+..++ .|.+||+.+++.. ..+.
T Consensus 159 ~d~~~~~~~~~~~~~~~~-~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~ 237 (337)
T 1pby_B 159 MDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVR 237 (337)
T ss_dssp EETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEE
T ss_pred EECCCCcEeeeeeccccC-CCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecC
Confidence 999998877666544310 122667776421100 0000 111122222 5899999988764 3344
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEecCCCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496 489 GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR 562 (563)
Q Consensus 489 ~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~g~~la~~~~~~~v~v~~~~ 562 (563)
.+...+.+++|+|||++|+++ ++.|.+||+.+++.+..+.....+.+++|+|+|++|+++..++.|.|||++
T Consensus 238 ~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~ 309 (337)
T 1pby_B 238 IMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAE 309 (337)
T ss_dssp ECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEETT
T ss_pred CCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCCceeeEEECCCCCEEEEEcCCCcEEEEECc
Confidence 566678999999999999988 789999999999998888777778999999999999999889999999974
No 149
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.90 E-value=3.5e-21 Score=196.83 Aligned_cols=253 Identities=15% Similarity=0.164 Sum_probs=172.1
Q ss_pred CceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEE----E
Q 008496 216 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLA----T 291 (563)
Q Consensus 216 ~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~----s 291 (563)
..++.++|++++.++++|+.|+ +++|+.................. .............|++++|+|+|++|+ +
T Consensus 37 ~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~v~~l~~spdg~~lav~~~s 113 (434)
T 2oit_A 37 ERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIV--DKVQGLLVPMKFPIHHLALSCDNLTLSACMMS 113 (434)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEE--ECCCCEEECCSSCEEEEEECTTSCEEEEEEEE
T ss_pred CCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCccccc--ccCccccccCCCcccEEEEcCCCCEEEEEEec
Confidence 4578899999999999999988 88887542111000000001110 000011112346799999999999999 7
Q ss_pred EeCCCeEEEEEcCCc------------eeEeeccCCCCEEEEEeCCC-CCEEEEeeCCCcEEEEECCCCceeEEeeeccc
Q 008496 292 GSYDGQARIWSTNGD------------LKCTLSKHKGPIFSLKWNKK-GDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSG 358 (563)
Q Consensus 292 g~~dg~i~vw~~~~~------------~~~~~~~h~~~V~~l~~~~~-~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~ 358 (563)
|+.|+.|+||+.... ....+.+|..+|.+++|+|+ +++|++++.||+|++||++++...
T Consensus 114 gs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~-------- 185 (434)
T 2oit_A 114 SEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKV-------- 185 (434)
T ss_dssp TTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEE--------
T ss_pred cCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcce--------
Confidence 889999999996422 13456779999999999998 789999999999999999875321
Q ss_pred CeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecc
Q 008496 359 PTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLRE 438 (563)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~ 438 (563)
....+|...|.+++|+|+|++|++|+.||+|++||.+ +.....+..
T Consensus 186 ---------------------------------~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~ 231 (434)
T 2oit_A 186 ---------------------------------CATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPC 231 (434)
T ss_dssp ---------------------------------EEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECC
T ss_pred ---------------------------------eeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccC
Confidence 1223577889999999999999999999999999998 444444433
Q ss_pred c-------CCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCe------EEEEeCCCCe----EE-EEec-------CCCCC
Q 008496 439 H-------SKEIYTIRWSPTGSGTNNPNQQLILASASFDST------VKLWDVELGK----LL-YSLN-------GHREP 493 (563)
Q Consensus 439 ~-------~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~------i~iwd~~~~~----~~-~~~~-------~h~~~ 493 (563)
| ...+.++.|++++. +++++++.||. +++|++++.. .. ..+. +.+.+
T Consensus 232 ~~~~~~~~~~~v~~v~w~~~~~--------~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~ 303 (434)
T 2oit_A 232 PPFYESDHPVRVLDVLWIGTYV--------FAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQH 303 (434)
T ss_dssp CTTCCTTSCEEEEEEEEEETTE--------EEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCC
T ss_pred CcccCCCCceeEEEEEEecCce--------EEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCc
Confidence 3 33799999998653 34445556643 8999998542 11 1111 23334
Q ss_pred EEEEEEcCCCCEEEEEeC-CCcEEEEecC
Q 008496 494 VYSLAFSPTGEYLASGSL-DKSMHIWSLK 521 (563)
Q Consensus 494 i~~l~~spdg~~lasgs~-dg~v~iw~~~ 521 (563)
-..+.+-++.+++++++. .+.|.|....
T Consensus 304 ~~~~~~l~dw~l~~v~s~~s~dv~vl~~~ 332 (434)
T 2oit_A 304 HYYLSYIEEWDLVLAASAASTEVSILARQ 332 (434)
T ss_dssp CEEEEEEGGGTEEEEEETTCSBCEEEEEC
T ss_pred ceeeehhccCCEEEEecCCCCceeEEEec
Confidence 444444477777665554 4556666643
No 150
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.89 E-value=2.2e-21 Score=191.24 Aligned_cols=273 Identities=10% Similarity=0.030 Sum_probs=198.3
Q ss_pred CEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCC-CeEEEEECCCCCEE-EEEeCCCeEEEEEcC-
Q 008496 228 SLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSK-DVTTLDWNGEGTLL-ATGSYDGQARIWSTN- 304 (563)
Q Consensus 228 ~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~V~~l~~s~~g~~l-~sg~~dg~i~vw~~~- 304 (563)
.+|++++.++.|++||+.++.. +..... .... .+..++|+|+|+++ ++++.++.|.+|+..
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~-------------~~~~~~---~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~ 65 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAV-------------DKVITI---ADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVT 65 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEE-------------EEEEEC---TTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred cEEEEcCCCCeEEEEECCCCcE-------------EEEEEc---CCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCC
Confidence 4789999999999999876432 111111 1111 36789999999766 455667899999975
Q ss_pred CceeEeecc-C----CCCEEEEEeCCCCCEEEEee------------CCCcEEEEECCCCceeEEeeecccCeEEEecCC
Q 008496 305 GDLKCTLSK-H----KGPIFSLKWNKKGDYLLTGS------------CDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN 367 (563)
Q Consensus 305 ~~~~~~~~~-h----~~~V~~l~~~~~~~~l~s~s------------~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 367 (563)
+.....+.. + ...+.+++|+|+|++|++++ .++.|.+||+.+++....+.. ...+..+.|.+
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~ 144 (337)
T 1pby_B 66 GETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWAR 144 (337)
T ss_dssp CCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECT
T ss_pred CCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECC
Confidence 444444432 2 22567899999999998886 579999999999887776654 33455666765
Q ss_pred Cce-EEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeC-CC-----------------------cE
Q 008496 368 NVS-FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD-DV-----------------------TA 422 (563)
Q Consensus 368 ~~~-~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~-dg-----------------------~i 422 (563)
+.. ++++ ++.|++|++...+.+..+..+... ..+.|+|+++.++..+. ++ .|
T Consensus 145 dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 221 (337)
T 1pby_B 145 DGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGL 221 (337)
T ss_dssp TSSCEEEE--SSSEEEEETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEE
T ss_pred CCCEEEEe--CCeEEEEECCCCcEeeeeeccccC-CCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccce
Confidence 543 4444 688999999988877666544311 12378999987655443 32 46
Q ss_pred EEEeCCCCcee-eeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcC
Q 008496 423 KIWNMKQDKYV-HDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSP 501 (563)
Q Consensus 423 ~iwd~~~~~~~-~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp 501 (563)
.+||+.+++.. ..+..+...+.+++|+|++. +++++ ++.|++||+.+++.+..+..+ ..+.+++|+|
T Consensus 222 ~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~---------~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~ 289 (337)
T 1pby_B 222 LTMDLETGEMAMREVRIMDVFYFSTAVNPAKT---------RAFGA--YNVLESFDLEKNASIKRVPLP-HSYYSVNVST 289 (337)
T ss_dssp EEEETTTCCEEEEEEEECSSCEEEEEECTTSS---------EEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECT
T ss_pred EEEeCCCCCceEeecCCCCCceeeEEECCCCC---------EEEEe--CCeEEEEECCCCcCcceecCC-CceeeEEECC
Confidence 89999988764 23345566788999999875 45555 799999999999988777643 4578999999
Q ss_pred CCCEEEEEeCCCcEEEEecCCCeeEEEEecC
Q 008496 502 TGEYLASGSLDKSMHIWSLKEGKIVKTYTGN 532 (563)
Q Consensus 502 dg~~lasgs~dg~v~iw~~~~~~~~~~~~~~ 532 (563)
||++|++++.++.|.+||+.+++.+..+...
T Consensus 290 dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~ 320 (337)
T 1pby_B 290 DGSTVWLGGALGDLAAYDAETLEKKGQVDLP 320 (337)
T ss_dssp TSCEEEEESBSSEEEEEETTTCCEEEEEECG
T ss_pred CCCEEEEEcCCCcEEEEECcCCcEEEEEEcC
Confidence 9999999999999999999999998887643
No 151
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.89 E-value=1.3e-20 Score=187.13 Aligned_cols=270 Identities=10% Similarity=0.055 Sum_probs=201.8
Q ss_pred CCceEEEEECCCCCEEEEeeC-------CCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCC
Q 008496 215 TSEVCACAWSPAGSLLASGSG-------DSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 287 (563)
Q Consensus 215 ~~~V~~~~~sp~~~~latgs~-------D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~ 287 (563)
...+..++|+|++++|++++. ++.|.+||..++... ..... ...+..++|+|+|+
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~-------------~~~~~-----~~~~~~~~~s~dg~ 101 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVT-------------QAIHN-----DLKPFGATINNTTQ 101 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEE-------------EEEEE-----SSCCCSEEEETTTT
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEE-------------EEEec-----CCCcceEEECCCCC
Confidence 356789999999998887774 568999998765321 11111 12366789999999
Q ss_pred EEEE-EeCCCeEEEEEcC-CceeEeeccCCCC---------EEEEEeCCCCCEEEEee--CCCcEEEEECCCCceeEEee
Q 008496 288 LLAT-GSYDGQARIWSTN-GDLKCTLSKHKGP---------IFSLKWNKKGDYLLTGS--CDKTAIVWDVKTEEWKQQFE 354 (563)
Q Consensus 288 ~l~s-g~~dg~i~vw~~~-~~~~~~~~~h~~~---------V~~l~~~~~~~~l~s~s--~D~~v~iwd~~~~~~~~~~~ 354 (563)
+++. +..++.|.+||.. ++....+..+... +.++.|+|+|+++++++ .++.|.+||+.+++....+.
T Consensus 102 ~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~ 181 (353)
T 3vgz_A 102 TLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQ 181 (353)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEEC
T ss_pred EEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEec
Confidence 5554 5557999999975 4555555544322 68899999999887766 47899999999998887776
Q ss_pred ecccCeEEEecCCC-ceEEEEeCCCeEEEEEcCCCcceeeecC----CCcceeEEEECCCCCEEEEEe-CCCcEEEEeCC
Q 008496 355 FHSGPTLDVDWRNN-VSFATSSTDNMIYVCKIGENRPIKTFAG----HQGEVNCVKWDPTGSLLASCS-DDVTAKIWNMK 428 (563)
Q Consensus 355 ~~~~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~~~----h~~~i~~~~~~~~~~~las~s-~dg~i~iwd~~ 428 (563)
.+...+..+.|..+ ..++++..++.|++|+..+.+.+..+.. +...+.+++|+|+++.++.++ .++.|.+||..
T Consensus 182 ~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~ 261 (353)
T 3vgz_A 182 NTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTR 261 (353)
T ss_dssp CCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETT
T ss_pred CCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECC
Confidence 44444556666543 4566777799999999998887766653 555688899999999766555 45999999999
Q ss_pred CCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEE
Q 008496 429 QDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLAS 508 (563)
Q Consensus 429 ~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~las 508 (563)
+++.+..+..... ..++|+|++. .++++...++.|.+||+.+++.+..+... ..+.+++|+|||++|++
T Consensus 262 ~~~~~~~~~~~~~--~~~~~s~dg~--------~l~v~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v 330 (353)
T 3vgz_A 262 NGNILAKVAAPES--LAVLFNPARN--------EAYVTHRQAGKVSVIDAKSYKVVKTFDTP-THPNSLALSADGKTLYV 330 (353)
T ss_dssp TCCEEEEEECSSC--CCEEEETTTT--------EEEEEETTTTEEEEEETTTTEEEEEEECC-SEEEEEEECTTSCEEEE
T ss_pred CCcEEEEEEcCCC--ceEEECCCCC--------EEEEEECCCCeEEEEECCCCeEEEEEecC-CCCCeEEEcCCCCEEEE
Confidence 9988776664432 5688999875 35666668999999999999988887654 46799999999998776
Q ss_pred EeCCC
Q 008496 509 GSLDK 513 (563)
Q Consensus 509 gs~dg 513 (563)
+..++
T Consensus 331 ~~~~~ 335 (353)
T 3vgz_A 331 SVKQK 335 (353)
T ss_dssp EEECC
T ss_pred EEccc
Confidence 66553
No 152
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.89 E-value=1e-21 Score=200.76 Aligned_cols=245 Identities=19% Similarity=0.197 Sum_probs=176.5
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEEcCC------------ceeE----eeccCCCCEEEEEeCCCCCEEE----Eee
Q 008496 275 KDVTTLDWNGEGTLLATGSYDGQARIWSTNG------------DLKC----TLSKHKGPIFSLKWNKKGDYLL----TGS 334 (563)
Q Consensus 275 ~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~------------~~~~----~~~~h~~~V~~l~~~~~~~~l~----s~s 334 (563)
..+..+++++++.++++|+.+| +++|+... .... ....|..+|.+++|+|+|++|+ +|+
T Consensus 37 ~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs 115 (434)
T 2oit_A 37 ERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSE 115 (434)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETT
T ss_pred CCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccC
Confidence 3478899999999999999988 88887421 1110 1123567899999999999999 889
Q ss_pred CCCcEEEEECCCCceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCC-CCEE
Q 008496 335 CDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT-GSLL 413 (563)
Q Consensus 335 ~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~-~~~l 413 (563)
.|++|++||+.+..... .... ..-..+..+.+|...|.+++|+|+ +.+|
T Consensus 116 ~d~~v~iwd~~~~~~~~-----~~~~-------------------------~~~~~~~~~~~h~~~V~~v~~~p~~~~~l 165 (434)
T 2oit_A 116 YGSIIAFFDVRTFSNEA-----KQQK-------------------------RPFAYHKLLKDAGGMVIDMKWNPTVPSMV 165 (434)
T ss_dssp TEEEEEEEEHHHHHCTT-----CSSC-------------------------CCSEEEECCCSGGGSEEEEEECSSCTTEE
T ss_pred CCceEEEEEccccccCC-----cCCc-------------------------ceeeeeeccCCCCCceEEEEECCCCCCEE
Confidence 99999999986531000 0000 000113456789999999999998 8899
Q ss_pred EEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCC---
Q 008496 414 ASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH--- 490 (563)
Q Consensus 414 as~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h--- 490 (563)
++|+.||+|++||++++..+.....|...|++++|+|+|. +|++|+.||+|++||++ ++....+..|
T Consensus 166 as~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~---------~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~ 235 (434)
T 2oit_A 166 AVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGK---------QLAVGKQNGTVVQYLPT-LQEKKVIPCPPFY 235 (434)
T ss_dssp EEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSS---------CEEEEETTSCEEEECTT-CCEEEEECCCTTC
T ss_pred EEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCC---------EEEEEcCCCcEEEEccC-CcccccccCCccc
Confidence 9999999999999998877766777889999999999875 68999999999999998 6665555443
Q ss_pred ----CCCEEEEEEcCCCCEEEE-EeCCCc------EEEEecCCCe-----eEEEEec--------CCCEEEEEEcCCCCE
Q 008496 491 ----REPVYSLAFSPTGEYLAS-GSLDKS------MHIWSLKEGK-----IVKTYTG--------NGGIFEVCWNKEGDK 546 (563)
Q Consensus 491 ----~~~i~~l~~spdg~~las-gs~dg~------v~iw~~~~~~-----~~~~~~~--------~~~i~~l~w~~~g~~ 546 (563)
...|.+++|++++.++++ ++.||. +++|++.+.+ ....+.. ...-+.+.+-++.+.
T Consensus 236 ~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l 315 (434)
T 2oit_A 236 ESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDL 315 (434)
T ss_dssp CTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTE
T ss_pred CCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCE
Confidence 237999999999988865 344543 8999997642 1122211 112234555577777
Q ss_pred EEEEEC-CCeEEEEE
Q 008496 547 IAACFA-NHTVCVLD 560 (563)
Q Consensus 547 la~~~~-~~~v~v~~ 560 (563)
+.+++. ...|.|+.
T Consensus 316 ~~v~s~~s~dv~vl~ 330 (434)
T 2oit_A 316 VLAASAASTEVSILA 330 (434)
T ss_dssp EEEEETTCSBCEEEE
T ss_pred EEEecCCCCceeEEE
Confidence 776655 44566664
No 153
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.89 E-value=5.2e-22 Score=217.23 Aligned_cols=314 Identities=12% Similarity=0.063 Sum_probs=213.6
Q ss_pred EEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeC-----
Q 008496 220 ACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY----- 294 (563)
Q Consensus 220 ~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~----- 294 (563)
.++|+|+|++++++ .|+.|++|++.++... .+ ...+. .....|.+++|||||++|++++.
T Consensus 20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~-----------~~--~~~~~-~~~~~~~~~~~SpDg~~la~~~~~~~~~ 84 (719)
T 1z68_A 20 FPNWISGQEYLHQS-ADNNIVLYNIETGQSY-----------TI--LSNRT-MKSVNASNYGLSPDRQFVYLESDYSKLW 84 (719)
T ss_dssp CCEESSSSEEEEEC-TTSCEEEEESSSCCEE-----------EE--ECHHH-HHTTTCSEEEECTTSSEEEEEEEEEECS
T ss_pred ccEECCCCeEEEEc-CCCCEEEEEcCCCcEE-----------EE--Ecccc-ccccceeeEEECCCCCeEEEEecCceeE
Confidence 57899999766654 6999999998765421 11 11110 00124789999999999999876
Q ss_pred ----CCeEEEEEcCCcee---EeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEee-ecccCe------
Q 008496 295 ----DGQARIWSTNGDLK---CTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFE-FHSGPT------ 360 (563)
Q Consensus 295 ----dg~i~vw~~~~~~~---~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~-~~~~~~------ 360 (563)
++.|++|+..+... ..+ ...+..++|+|+|++|++++ |+.|++||+.+++..+... .+...+
T Consensus 85 ~~s~~~~i~~~d~~~g~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~ 160 (719)
T 1z68_A 85 RYSYTATYYIYDLSNGEFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPD 160 (719)
T ss_dssp SSCEEEEEEEEETTTTEECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCC
T ss_pred EeecceEEEEEECCCCccccceec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEccccc
Confidence 78999999876544 233 35688899999999999885 7899999998887654321 111111
Q ss_pred -----------EEEecCCCc-eEEEEeCCC----------------------------------eEEEEEcCCCcce---
Q 008496 361 -----------LDVDWRNNV-SFATSSTDN----------------------------------MIYVCKIGENRPI--- 391 (563)
Q Consensus 361 -----------~~~~~~~~~-~~~~~~~d~----------------------------------~i~~~~~~~~~~~--- 391 (563)
..+.|.++. .++.++.|. .|++|++......
T Consensus 161 ~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~ 240 (719)
T 1z68_A 161 WVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQ 240 (719)
T ss_dssp HHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCE
T ss_pred ceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCcccee
Confidence 367887664 555555331 7889998876542
Q ss_pred -----eeecCCCcceeEEEECCCCCEEEEEeCC----CcEEEEe----CCCCceeeee----cccCCCEE-----EEEEc
Q 008496 392 -----KTFAGHQGEVNCVKWDPTGSLLASCSDD----VTAKIWN----MKQDKYVHDL----REHSKEIY-----TIRWS 449 (563)
Q Consensus 392 -----~~~~~h~~~i~~~~~~~~~~~las~s~d----g~i~iwd----~~~~~~~~~~----~~~~~~i~-----~~~~~ 449 (563)
..+.+|...+.+++|+||++++++.... ..|.+|| ..+++....+ ..|...+. .+.|+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~s 320 (719)
T 1z68_A 241 EVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFS 320 (719)
T ss_dssp ECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEEC
T ss_pred EccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEEC
Confidence 2245788889999999998888775433 2488899 7777665444 35666665 78999
Q ss_pred cCCCCCCCCCCcEEEEEEeCCC--eEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCC-----CcEEEEecCC
Q 008496 450 PTGSGTNNPNQQLILASASFDS--TVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLD-----KSMHIWSLKE 522 (563)
Q Consensus 450 p~~~~~~~~~~~~~l~s~s~dg--~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~d-----g~v~iw~~~~ 522 (563)
|+|.. ++++++..+| .|.+||+..++ ...+..+...|..+.++ +++.|+..+.+ +.+++|.+..
T Consensus 321 pdg~~-------l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~ 391 (719)
T 1z68_A 321 YDAIS-------YYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISI 391 (719)
T ss_dssp TTSSC-------EEEEEECTTSCEEEEEESSCSTT-CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEEC
T ss_pred CCCCe-------EEEEEEccCCceEEEEEECCCCc-eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeC
Confidence 98852 3344555666 57777877666 45666666678888888 88877766654 7888998753
Q ss_pred --Cee-EEEEe-----cCCCEEEEEEcCCCCEEEEEECC---CeEEEEEe
Q 008496 523 --GKI-VKTYT-----GNGGIFEVCWNKEGDKIAACFAN---HTVCVLDF 561 (563)
Q Consensus 523 --~~~-~~~~~-----~~~~i~~l~w~~~g~~la~~~~~---~~v~v~~~ 561 (563)
+.. ...+. ....+..++|+|+|+.|+..+.+ ..+.+||+
T Consensus 392 ~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~ 441 (719)
T 1z68_A 392 GSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDG 441 (719)
T ss_dssp SSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECS
T ss_pred CCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEEC
Confidence 421 23332 22457889999999988865432 24556654
No 154
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.89 E-value=4.3e-20 Score=183.34 Aligned_cols=249 Identities=11% Similarity=0.144 Sum_probs=171.3
Q ss_pred CCeEEEEECCCCCEEEEEeC---CCeEEEEEcCCce---eEeeccCCCCEEEEEeCCCCCEEEEee-CCCcEEEEECCC-
Q 008496 275 KDVTTLDWNGEGTLLATGSY---DGQARIWSTNGDL---KCTLSKHKGPIFSLKWNKKGDYLLTGS-CDKTAIVWDVKT- 346 (563)
Q Consensus 275 ~~V~~l~~s~~g~~l~sg~~---dg~i~vw~~~~~~---~~~~~~h~~~V~~l~~~~~~~~l~s~s-~D~~v~iwd~~~- 346 (563)
..+..++|+|+|+ |++++. ++.|++|+..+.. ...+..+...+..++|+|+|++|++++ .++++.+||+..
T Consensus 40 ~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~ 118 (347)
T 3hfq_A 40 QNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAAD 118 (347)
T ss_dssp SCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTT
T ss_pred CCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCC
Confidence 4467799999999 555443 6899999985432 233445677788999999999988887 679999999853
Q ss_pred CceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEe
Q 008496 347 EEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWN 426 (563)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd 426 (563)
+.... +.. .......|. ...+...+.+++|+|+|++++++..++.|++|+
T Consensus 119 g~~~~-~~~---------------------------~~~~~~~p~--~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~ 168 (347)
T 3hfq_A 119 GALTL-TDT---------------------------VQHSGHGPR--PEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYN 168 (347)
T ss_dssp SCEEE-EEE---------------------------EECCCCCSS--TTCSSCCEEEEEECTTSCEEEEETTTTEEEEEE
T ss_pred CCeee-cce---------------------------eecCCCCCC--ccccCCCceEEEECCCCcEEEEeCCCCEEEEEE
Confidence 22111 100 000000010 112344588999999999777777799999999
Q ss_pred CC-CCcee--eeeccc-CCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC--CeE--EEEecCCC------C
Q 008496 427 MK-QDKYV--HDLREH-SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL--GKL--LYSLNGHR------E 492 (563)
Q Consensus 427 ~~-~~~~~--~~~~~~-~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~--~~~--~~~~~~h~------~ 492 (563)
+. ++... ..+..+ ......++|+|+|. .+++++..++.|++|++.. ++. +..+.... .
T Consensus 169 ~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~--------~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~ 240 (347)
T 3hfq_A 169 VSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQ--------YAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHN 240 (347)
T ss_dssp ECTTSCEEEEEEEECCTTCCEEEEEECTTSS--------EEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCC
T ss_pred ECCCCcEEEeeeEEcCCCCCCceEEECCCCC--------EEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCC
Confidence 98 44332 122222 23577899999875 3556677889999999874 553 22333222 3
Q ss_pred CEEEEEEcCCCCEE-EEEeCCCcEEEEecCC-C--eeEEEEec-CCCEEEEEEcCCCCEEEEEEC-CCeEEEEEee
Q 008496 493 PVYSLAFSPTGEYL-ASGSLDKSMHIWSLKE-G--KIVKTYTG-NGGIFEVCWNKEGDKIAACFA-NHTVCVLDFR 562 (563)
Q Consensus 493 ~i~~l~~spdg~~l-asgs~dg~v~iw~~~~-~--~~~~~~~~-~~~i~~l~w~~~g~~la~~~~-~~~v~v~~~~ 562 (563)
.+..++|+|||++| ++...++.|.+|++.. + +.+..+.. ...+..++|+|||++|+++.. ++.+.||++.
T Consensus 241 ~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 241 GAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp EEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred cceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence 48899999999987 5566789999999972 2 45555554 335789999999999888865 4889999653
No 155
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.88 E-value=7.8e-21 Score=202.59 Aligned_cols=268 Identities=12% Similarity=0.134 Sum_probs=193.7
Q ss_pred CCceEEEEECCCCCEEEEeeC-CCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEe
Q 008496 215 TSEVCACAWSPAGSLLASGSG-DSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS 293 (563)
Q Consensus 215 ~~~V~~~~~sp~~~~latgs~-D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~ 293 (563)
..+|++++|+|||+.||+++. ||+++||++.++.. ..+ ...+...|..++|+|| +++++++
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~--------------~~l---t~~~~~~~~~~~~spd-~~l~~~~ 82 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET--------------VKL---NREPINSVLDPHYGVG-RVILVRD 82 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE--------------EEC---CSSCCSEECEECTTCS-EEEEEEE
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCc--------------Eee---ecccccccccccCCCC-eEEEEec
Confidence 356999999999999999887 99999999754321 111 1112246889999999 7888777
Q ss_pred C---CCeEEEE--Ec--CCceeEeeccCCCCEEEEEeCCCCCE-EEEeeCCCcEEEEECCCCceeEEeeecccCeEEEec
Q 008496 294 Y---DGQARIW--ST--NGDLKCTLSKHKGPIFSLKWNKKGDY-LLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW 365 (563)
Q Consensus 294 ~---dg~i~vw--~~--~~~~~~~~~~h~~~V~~l~~~~~~~~-l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 365 (563)
. +...++| +. .+... .+..+. .+...+|+|+|+. +++.+.++.+.+||+.+++......... .++.|
T Consensus 83 ~~~g~~~~~l~~~~~~~~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~~~ 157 (582)
T 3o4h_A 83 VSKGAEQHALFKVNTSRPGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG---FGFVS 157 (582)
T ss_dssp CSTTSCCEEEEEEETTSTTCCE-ECTTSC-SBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS---CEEEE
T ss_pred cCCCCcceEEEEEeccCCCccc-cccCCC-CceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC---ceEEE
Confidence 5 4555565 45 55444 333222 2345688888853 3333444455599999887665444332 55666
Q ss_pred CCC-ceEEEEeCC----CeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCC--cEEEEeCCCCceeeeecc
Q 008496 366 RNN-VSFATSSTD----NMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDV--TAKIWNMKQDKYVHDLRE 438 (563)
Q Consensus 366 ~~~-~~~~~~~~d----~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg--~i~iwd~~~~~~~~~~~~ 438 (563)
.++ ..++.++.+ ..|++|++.++.. ..+.+|.+.+..++|+|||+.|+++..++ .|++||+.+++.. .+..
T Consensus 158 spDG~~la~~~~~~~~~~~i~~~d~~~g~~-~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~ 235 (582)
T 3o4h_A 158 DIRGDLIAGLGFFGGGRVSLFTSNLSSGGL-RVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLEL 235 (582)
T ss_dssp EEETTEEEEEEEEETTEEEEEEEETTTCCC-EEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCC
T ss_pred CCCCCEEEEEEEcCCCCeEEEEEcCCCCCc-eEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccC
Confidence 544 445555555 6799999877664 46778888999999999999999888898 8999999988877 6677
Q ss_pred cCCCEEEEE--------EccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEe
Q 008496 439 HSKEIYTIR--------WSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGS 510 (563)
Q Consensus 439 ~~~~i~~~~--------~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs 510 (563)
|...+..+. |+|+|. ++++++.|++++||++ |+.+. .+...|.+++|+ ||+++++++
T Consensus 236 ~~~~~~~~~~~~~~~~~~spdg~---------~~~~~~~~g~~~l~~~--g~~~~---~~~~~v~~~~~s-dg~~l~~~s 300 (582)
T 3o4h_A 236 PSKDFSSYRPTAITWLGYLPDGR---------LAVVARREGRSAVFID--GERVE---APQGNHGRVVLW-RGKLVTSHT 300 (582)
T ss_dssp SCSHHHHHCCSEEEEEEECTTSC---------EEEEEEETTEEEEEET--TEEEC---CCSSEEEEEEEE-TTEEEEEEE
T ss_pred CCcChhhhhhccccceeEcCCCc---------EEEEEEcCCcEEEEEE--CCeec---cCCCceEEEEec-CCEEEEEEc
Confidence 776666666 999884 7889999999999999 77654 234678999999 999999888
Q ss_pred CCC---cEEEEecCC
Q 008496 511 LDK---SMHIWSLKE 522 (563)
Q Consensus 511 ~dg---~v~iw~~~~ 522 (563)
.+. .|.+|+..+
T Consensus 301 ~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 301 SLSTPPRIVSLPSGE 315 (582)
T ss_dssp ETTEEEEEEEETTCC
T ss_pred CCCCCCeEEEEcCCC
Confidence 774 477777653
No 156
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.87 E-value=1.7e-19 Score=180.03 Aligned_cols=268 Identities=12% Similarity=0.132 Sum_probs=180.6
Q ss_pred CCEEEEEeC----CCeEEEEEcC---CceeEeeccCCCCEEEEEeCCCCCEEEEeeCC----CcEEEEECCC--CceeE-
Q 008496 286 GTLLATGSY----DGQARIWSTN---GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCD----KTAIVWDVKT--EEWKQ- 351 (563)
Q Consensus 286 g~~l~sg~~----dg~i~vw~~~---~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D----~~v~iwd~~~--~~~~~- 351 (563)
..+++.|++ ++.|.+|..+ +.+......+...+..++|+|+|++|++++.+ +.|.+|++.. +.+..
T Consensus 13 ~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~ 92 (361)
T 3scy_A 13 ELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLL 92 (361)
T ss_dssp EEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEE
T ss_pred ceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEe
Confidence 345666654 4689998753 33332222266777889999999999998886 7999998765 44332
Q ss_pred -EeeecccCeEEEecCCCc-eEEEEeCCCeEEEEEcCCCcceeee------cC--------CCcceeEEEECCCCCEEEE
Q 008496 352 -QFEFHSGPTLDVDWRNNV-SFATSSTDNMIYVCKIGENRPIKTF------AG--------HQGEVNCVKWDPTGSLLAS 415 (563)
Q Consensus 352 -~~~~~~~~~~~~~~~~~~-~~~~~~~d~~i~~~~~~~~~~~~~~------~~--------h~~~i~~~~~~~~~~~las 415 (563)
....+......+.+ +.. .+++...++.+.+|++.....+..+ .+ +...+.+++|+|+|++|++
T Consensus 93 ~~~~~~~~~p~~~~~-dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~ 171 (361)
T 3scy_A 93 NTQKTMGADPCYLTT-NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLA 171 (361)
T ss_dssp EEEECSSSCEEEEEE-CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEE
T ss_pred eEeccCCCCcEEEEE-CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEE
Confidence 22223344556666 444 4455557899999999754332211 11 1233578999999996655
Q ss_pred E-eCCCcEEEEeCCCCce------e-------eeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC
Q 008496 416 C-SDDVTAKIWNMKQDKY------V-------HDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG 481 (563)
Q Consensus 416 ~-s~dg~i~iwd~~~~~~------~-------~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~ 481 (563)
+ ..++.|++|++..... + .....+......++|+|++. .+++++..++.|++|++.++
T Consensus 172 ~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~--------~l~v~~~~~~~v~v~~~~~g 243 (361)
T 3scy_A 172 DDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGK--------FAYLINEIGGTVIAFRYADG 243 (361)
T ss_dssp EETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSS--------EEEEEETTTCEEEEEEEETT
T ss_pred EeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCC--------EEEEEcCCCCeEEEEEecCC
Confidence 4 4588999998875431 1 11223345678899999885 24444447999999999877
Q ss_pred eE--EEEec---CCCCCEEEEEEcCCCCEEEEEeC--CCcEEEEecC--CCe--eEEEEecCCCEEEEEEcCCCCEEEEE
Q 008496 482 KL--LYSLN---GHREPVYSLAFSPTGEYLASGSL--DKSMHIWSLK--EGK--IVKTYTGNGGIFEVCWNKEGDKIAAC 550 (563)
Q Consensus 482 ~~--~~~~~---~h~~~i~~l~~spdg~~lasgs~--dg~v~iw~~~--~~~--~~~~~~~~~~i~~l~w~~~g~~la~~ 550 (563)
+. +..+. .+......++|||||++|+++.. ++.|.+|++. +++ .+..+.....+.+++|+|||++|+++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~ 323 (361)
T 3scy_A 244 MLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVA 323 (361)
T ss_dssp EEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEE
T ss_pred ceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEE
Confidence 54 33332 23345789999999999876665 4899999995 455 44455444457899999999998888
Q ss_pred E-CCCeEEEEEee
Q 008496 551 F-ANHTVCVLDFR 562 (563)
Q Consensus 551 ~-~~~~v~v~~~~ 562 (563)
. .++.+.||.+.
T Consensus 324 ~~~~~~v~v~~~d 336 (361)
T 3scy_A 324 CRDTNVIQIFERD 336 (361)
T ss_dssp ETTTTEEEEEEEC
T ss_pred ECCCCCEEEEEEE
Confidence 7 57889997654
No 157
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.87 E-value=1e-19 Score=180.63 Aligned_cols=253 Identities=13% Similarity=0.161 Sum_probs=171.4
Q ss_pred CCCCceEEEEECCCCCEEEEeeC--CCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEE
Q 008496 213 GHTSEVCACAWSPAGSLLASGSG--DSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLA 290 (563)
Q Consensus 213 ~h~~~V~~~~~sp~~~~latgs~--D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~ 290 (563)
.+...+..++|+|+|++++++.. ++.|++|++.++.. ..+.... .+...+..++|+|+|++|+
T Consensus 37 ~~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~-----------~~~~~~~----~~~~~p~~~a~spdg~~l~ 101 (347)
T 3hfq_A 37 AATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTA-----------HKLNTVV----APGTPPAYVAVDEARQLVY 101 (347)
T ss_dssp EECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEE-----------EEEEEEE----EESCCCSEEEEETTTTEEE
T ss_pred eccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcE-----------EEeeeee----cCCCCCEEEEECCCCCEEE
Confidence 34466778999999994444432 68999999864321 0111111 1234578899999999988
Q ss_pred EEe-CCCeEEEEEcC--Ccee--Eeecc---------CCCCEEEEEeCCCCCEEEEeeCCCcEEEEECC-CCceeEEeee
Q 008496 291 TGS-YDGQARIWSTN--GDLK--CTLSK---------HKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVK-TEEWKQQFEF 355 (563)
Q Consensus 291 sg~-~dg~i~vw~~~--~~~~--~~~~~---------h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~-~~~~~~~~~~ 355 (563)
+++ .++.+++|+.. +... ..+.. +...+.+++|+|+|+.+++...++.|.+||+. ++.+....
T Consensus 102 ~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~-- 179 (347)
T 3hfq_A 102 SANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQS-- 179 (347)
T ss_dssp EEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEE--
T ss_pred EEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEee--
Confidence 888 67999999975 2222 12211 12348899999999966666678899999987 44322110
Q ss_pred cccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecC-CCcceeEEEECCCCCEEEE-EeCCCcEEEEeCCC--Cc
Q 008496 356 HSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAG-HQGEVNCVKWDPTGSLLAS-CSDDVTAKIWNMKQ--DK 431 (563)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~-h~~~i~~~~~~~~~~~las-~s~dg~i~iwd~~~--~~ 431 (563)
.+.. ....+..++|+|+|+++++ +..++.|++|++.. +.
T Consensus 180 -------------------------------------~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~ 222 (347)
T 3hfq_A 180 -------------------------------------VLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGA 222 (347)
T ss_dssp -------------------------------------EEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTE
T ss_pred -------------------------------------eEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCc
Confidence 0000 1124567999999996554 56789999999874 43
Q ss_pred e--eeeecccC------CCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCC---CCeEEEEecCCCCCEEEEEEc
Q 008496 432 Y--VHDLREHS------KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE---LGKLLYSLNGHREPVYSLAFS 500 (563)
Q Consensus 432 ~--~~~~~~~~------~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~---~~~~~~~~~~h~~~i~~l~~s 500 (563)
. +..+.... ..+..++|+|+|. .+++++..++.|.+|++. ..+.+..+..+...+..++|+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~i~~spdG~--------~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~s 294 (347)
T 3hfq_A 223 FTQLGIVKTIPADYTAHNGAAAIRLSHDGH--------FLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLD 294 (347)
T ss_dssp EEEEEEEESSCTTCCSCCEEEEEEECTTSC--------EEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEEC
T ss_pred eEEeeeeeecCCCCCCCCcceeEEECCCCC--------EEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEEC
Confidence 2 22222222 3478899999885 355677789999999987 225566666666678899999
Q ss_pred CCCCEEEEEeCC-CcEEEE--ecCCCeeEE
Q 008496 501 PTGEYLASGSLD-KSMHIW--SLKEGKIVK 527 (563)
Q Consensus 501 pdg~~lasgs~d-g~v~iw--~~~~~~~~~ 527 (563)
|||++|++++.+ +.|.+| |..+|++..
T Consensus 295 pdg~~l~v~~~~~~~v~v~~~d~~tg~l~~ 324 (347)
T 3hfq_A 295 PTEAFVVVVNQNTDNATLYARDLTSGKLSL 324 (347)
T ss_dssp TTSSEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred CCCCEEEEEEcCCCcEEEEEEeCCCCeEEe
Confidence 999999888764 899999 556777653
No 158
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.87 E-value=9.5e-20 Score=180.54 Aligned_cols=269 Identities=12% Similarity=0.053 Sum_probs=184.3
Q ss_pred EEEECCCCCEEEEEeCCCeEEEEEcCC-ceeEeeccCC-CCEEEEEeCCCCCEEE-EeeCCCcEEEEECCCCceeEEeee
Q 008496 279 TLDWNGEGTLLATGSYDGQARIWSTNG-DLKCTLSKHK-GPIFSLKWNKKGDYLL-TGSCDKTAIVWDVKTEEWKQQFEF 355 (563)
Q Consensus 279 ~l~~s~~g~~l~sg~~dg~i~vw~~~~-~~~~~~~~h~-~~V~~l~~~~~~~~l~-s~s~D~~v~iwd~~~~~~~~~~~~ 355 (563)
.+++++++.++++++.++.|++||... .....+..+. ..+..++|+|+|++++ ++..++.|.+||+.+++....+..
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~ 83 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL 83 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence 346788899999999999999999764 4555554433 2567899999998765 556789999999999887776654
Q ss_pred ccc------CeEEEecCCCc-eEEEEeC------------CCeEEEEEcCCCc---ceeeecCCCcceeEEEECCCCCEE
Q 008496 356 HSG------PTLDVDWRNNV-SFATSST------------DNMIYVCKIGENR---PIKTFAGHQGEVNCVKWDPTGSLL 413 (563)
Q Consensus 356 ~~~------~~~~~~~~~~~-~~~~~~~------------d~~i~~~~~~~~~---~~~~~~~h~~~i~~~~~~~~~~~l 413 (563)
... .+..+.|.++. .+++++. ++.|++|++.+.+ .+..+.. ...+.+++|+|+|+ +
T Consensus 84 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~-l 161 (349)
T 1jmx_B 84 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPM-PRQVYLMRAADDGS-L 161 (349)
T ss_dssp CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEEC-CSSCCCEEECTTSC-E
T ss_pred ccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccC-CCcccceeECCCCc-E
Confidence 321 24556666543 4555553 4899999997743 3334433 33688999999999 5
Q ss_pred EEEeCCCcEEEEeCCCCceeeeecccCC------------------------CEEEEEEccCCCCCCCC--CCcEEEEEE
Q 008496 414 ASCSDDVTAKIWNMKQDKYVHDLREHSK------------------------EIYTIRWSPTGSGTNNP--NQQLILASA 467 (563)
Q Consensus 414 as~s~dg~i~iwd~~~~~~~~~~~~~~~------------------------~i~~~~~~p~~~~~~~~--~~~~~l~s~ 467 (563)
++++. .|.+||..+++.+..+..+.. ....+.+++++...... ....++...
T Consensus 162 ~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 239 (349)
T 1jmx_B 162 YVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVD 239 (349)
T ss_dssp EEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEE
T ss_pred EEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEe
Confidence 45544 499999998887766543320 22334554433210000 000111122
Q ss_pred eCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEecCCCeeEEEEecCCCEEEEEEcCCCCE
Q 008496 468 SFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSP-TGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDK 546 (563)
Q Consensus 468 s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp-dg~~lasgs~dg~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~g~~ 546 (563)
..++.+++|++ ..+...+.+++|+| ||++|+++ ++.|.+||+.+++.++.+.....+..++|+|+|++
T Consensus 240 ~~~~~~~~~~~---------~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~ 308 (349)
T 1jmx_B 240 LKTGKTHTQEF---------ADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDK 308 (349)
T ss_dssp TTTCCEEEEEE---------EECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSC
T ss_pred ccCCcEEeccc---------ccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCCCCccceEECCCCCE
Confidence 22333443332 33556789999999 99999988 88999999999999888877667889999999999
Q ss_pred EEEEECCCeEEEEEee
Q 008496 547 IAACFANHTVCVLDFR 562 (563)
Q Consensus 547 la~~~~~~~v~v~~~~ 562 (563)
|+++..++.|.|||.+
T Consensus 309 l~~~~~~~~v~v~d~~ 324 (349)
T 1jmx_B 309 LYLGGTFNDLAVFNPD 324 (349)
T ss_dssp EEEESBSSEEEEEETT
T ss_pred EEEecCCCeEEEEecc
Confidence 9988888999999974
No 159
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.86 E-value=1.1e-19 Score=179.95 Aligned_cols=275 Identities=11% Similarity=0.062 Sum_probs=187.4
Q ss_pred EEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEE-EEeCCCeE
Q 008496 220 ACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLA-TGSYDGQA 298 (563)
Q Consensus 220 ~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~-sg~~dg~i 298 (563)
.+++++++.++++++.++.|++||+.+++. ...... .....+..++|+|+|++++ ++..++.|
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~-------------~~~~~~---~~~~~~~~~~~s~dg~~~~v~~~~~~~i 67 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTV-------------YKSCVM---PDKFGPGTAMMAPDNRTAYVLNNHYGDI 67 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEE-------------EEEEEC---SSCCSSCEEEECTTSSEEEEEETTTTEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcE-------------EEEEec---CCCCCCceeEECCCCCEEEEEeCCCCcE
Confidence 456888899999999999999999876532 111111 1112467899999998654 55578999
Q ss_pred EEEEcCC-ceeEeeccCC------CCEEEEEeCCCCCEEEEeeCC------------CcEEEEECCCCcee---EEeeec
Q 008496 299 RIWSTNG-DLKCTLSKHK------GPIFSLKWNKKGDYLLTGSCD------------KTAIVWDVKTEEWK---QQFEFH 356 (563)
Q Consensus 299 ~vw~~~~-~~~~~~~~h~------~~V~~l~~~~~~~~l~s~s~D------------~~v~iwd~~~~~~~---~~~~~~ 356 (563)
.+|+... .....+..+. ..+.+++|+|+|++|++++.+ +.|.+||+.+++.. ..+..
T Consensus 68 ~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~- 146 (349)
T 1jmx_B 68 YGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPM- 146 (349)
T ss_dssp EEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEEC-
T ss_pred EEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccC-
Confidence 9999864 4444443222 236789999999999998865 89999999885433 22322
Q ss_pred ccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCC-c-----------------------ceeEEEECCCCCE
Q 008496 357 SGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQ-G-----------------------EVNCVKWDPTGSL 412 (563)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~-~-----------------------~i~~~~~~~~~~~ 412 (563)
...+..+.|..+..+++++ +.|++|+..+.+.+..+..+. + ...++++++++..
T Consensus 147 ~~~~~~~~~s~dg~l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 224 (349)
T 1jmx_B 147 PRQVYLMRAADDGSLYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQ 224 (349)
T ss_dssp CSSCCCEEECTTSCEEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-----
T ss_pred CCcccceeECCCCcEEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcC
Confidence 2235566676554454443 349999998877766654332 0 2345666655421
Q ss_pred -----------EEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEcc-CCCCCCCCCCcEEEEEEeCCCeEEEEeCCC
Q 008496 413 -----------LASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSP-TGSGTNNPNQQLILASASFDSTVKLWDVEL 480 (563)
Q Consensus 413 -----------las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p-~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~ 480 (563)
+.....++.+++|++ ..+...+..++|+| ++. +++++ ++.|.+||+.+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~sp~dg~---------~l~~~--~~~v~~~d~~~ 284 (349)
T 1jmx_B 225 DPATADLLYGYLSVDLKTGKTHTQEF---------ADLTELYFTGLRSPKDPN---------QIYGV--LNRLAKYDLKQ 284 (349)
T ss_dssp --CCCEEEEEEEEEETTTCCEEEEEE---------EECSSCEEEEEECSSCTT---------EEEEE--ESEEEEEETTT
T ss_pred CccccccceeEEEEeccCCcEEeccc---------ccCCCcceeeEecCCCCC---------EEEEE--cCeEEEEECcc
Confidence 112223344444443 23556788999999 875 45555 88999999999
Q ss_pred CeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEecCCC
Q 008496 481 GKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGG 534 (563)
Q Consensus 481 ~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~~~ 534 (563)
++.+..+... ..+.+++|+|||++|++++.++.|.+||+.+++.+..+...++
T Consensus 285 ~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~~~~ 337 (349)
T 1jmx_B 285 RKLIKAANLD-HTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPGG 337 (349)
T ss_dssp TEEEEEEECS-SCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECSSS
T ss_pred CeEEEEEcCC-CCccceEECCCCCEEEEecCCCeEEEEeccccceeeeeecCCC
Confidence 9988777633 3467999999999998888899999999999999888765443
No 160
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.86 E-value=4.5e-20 Score=202.25 Aligned_cols=278 Identities=12% Similarity=0.094 Sum_probs=181.5
Q ss_pred ceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccc-cCCCCeEEEEECCCCCEEEEEeCC
Q 008496 217 EVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTN-EKSKDVTTLDWNGEGTLLATGSYD 295 (563)
Q Consensus 217 ~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~V~~l~~s~~g~~l~sg~~d 295 (563)
....++|+|+|.+|+++ |+.|++|++.++... ..+.++.. ........++|||||++|+.++.+
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~ 82 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSS-------------VFLENSTFDEFGHSINDYSISPDGQFILLEYNY 82 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEE-------------EEECTTTTTTCCSCCCEEEECTTSSEEEEEEEE
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCCceE-------------EEEechhhhhhcccccceEECCCCCEEEEEECC
Confidence 35678999999999986 999999999876421 11111111 111123458999999999999876
Q ss_pred ---------CeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEee-ecccCeEEEec
Q 008496 296 ---------GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFE-FHSGPTLDVDW 365 (563)
Q Consensus 296 ---------g~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~-~~~~~~~~~~~ 365 (563)
+.+.+||..+.....+..|.+.+...+|||+|+.|+.+ .|+.|.+||+.++...+... .+...+
T Consensus 83 ~~~~r~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~----- 156 (740)
T 4a5s_A 83 VKQWRHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDII----- 156 (740)
T ss_dssp EECSSSCEEEEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTE-----
T ss_pred eeeEEEccceEEEEEECCCCcEEEcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccce-----
Confidence 56779999877666778888899999999999999887 57899999998876443211 111001
Q ss_pred CCCceEEEEeCCCeEEEEEcCCCcceeeecCCC---------cceeEEEECCCCCEEEEEeCC-----------------
Q 008496 366 RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQ---------GEVNCVKWDPTGSLLASCSDD----------------- 419 (563)
Q Consensus 366 ~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~---------~~i~~~~~~~~~~~las~s~d----------------- 419 (563)
+.|+. +....+.|||||+.||.++.|
T Consensus 157 ----------------------------~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~ 208 (740)
T 4a5s_A 157 ----------------------------YNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESL 208 (740)
T ss_dssp ----------------------------EESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTC
T ss_pred ----------------------------ecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCC
Confidence 11111 112235566666655554321
Q ss_pred -------------------CcEEEEeCCC---Cc--eeeeec------ccCCCEEEEEEccCCCCCCCCCCcEEEEEE-e
Q 008496 420 -------------------VTAKIWNMKQ---DK--YVHDLR------EHSKEIYTIRWSPTGSGTNNPNQQLILASA-S 468 (563)
Q Consensus 420 -------------------g~i~iwd~~~---~~--~~~~~~------~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~-s 468 (563)
.+|++||+.+ +. ....+. .|...+..++|+|+|. +++.. .
T Consensus 209 ~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~---------~~~~~~~ 279 (740)
T 4a5s_A 209 QYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQER---------ISLQWLR 279 (740)
T ss_dssp SSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTE---------EEEEEEE
T ss_pred CCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCe---------EEEEEeC
Confidence 2588899988 63 222333 3777799999999974 23332 2
Q ss_pred ---CCCeEEEEeCCCCe----EEE--Ee--cCCCCCEE-----EEEEcCCCCEEE-EEeC-C--CcEEEEecCCCeeEEE
Q 008496 469 ---FDSTVKLWDVELGK----LLY--SL--NGHREPVY-----SLAFSPTGEYLA-SGSL-D--KSMHIWSLKEGKIVKT 528 (563)
Q Consensus 469 ---~dg~i~iwd~~~~~----~~~--~~--~~h~~~i~-----~l~~spdg~~la-sgs~-d--g~v~iw~~~~~~~~~~ 528 (563)
.+..|++||+.+++ +.. .+ .+|...|. .++|||||+.|+ ..+. + ..|.+|++.++.....
T Consensus 280 r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~l 359 (740)
T 4a5s_A 280 RIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFI 359 (740)
T ss_dssp SSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEES
T ss_pred CCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEec
Confidence 23479999998886 321 11 34555444 789999999887 6664 3 4688889887766554
Q ss_pred EecCCCEEEEEEcCCCCEEEEEECC
Q 008496 529 YTGNGGIFEVCWNKEGDKIAACFAN 553 (563)
Q Consensus 529 ~~~~~~i~~l~w~~~g~~la~~~~~ 553 (563)
..+.-.+..+.+ +||+.|++....
T Consensus 360 T~g~~~v~~~~~-~d~~~i~f~~~~ 383 (740)
T 4a5s_A 360 TKGTWEVIGIEA-LTSDYLYYISNE 383 (740)
T ss_dssp CCSSSCEEEEEE-ECSSEEEEEESC
T ss_pred ccCCEEEEEEEE-EeCCEEEEEEec
Confidence 445445655432 447777766543
No 161
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.86 E-value=4e-21 Score=210.22 Aligned_cols=272 Identities=13% Similarity=0.131 Sum_probs=189.1
Q ss_pred EEEECCCCCEEEEEeCCCeEEEEEcCCcee-EeeccCCC---CEEEEEeCCCCCEEEEeeC---------CCcEEEEECC
Q 008496 279 TLDWNGEGTLLATGSYDGQARIWSTNGDLK-CTLSKHKG---PIFSLKWNKKGDYLLTGSC---------DKTAIVWDVK 345 (563)
Q Consensus 279 ~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~-~~~~~h~~---~V~~l~~~~~~~~l~s~s~---------D~~v~iwd~~ 345 (563)
.++|+|+|+++++ +.|+.|++|+..+... ..+..|.. .|.+++|||+|++|++++. |++|++||+.
T Consensus 20 ~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~ 98 (719)
T 1z68_A 20 FPNWISGQEYLHQ-SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS 98 (719)
T ss_dssp CCEESSSSEEEEE-CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred ccEECCCCeEEEE-cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence 6789999965554 5699999999876443 34444433 4899999999999998876 7899999999
Q ss_pred CCceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeee-cCCCcce-----------------eEEEEC
Q 008496 346 TEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTF-AGHQGEV-----------------NCVKWD 407 (563)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~-~~h~~~i-----------------~~~~~~ 407 (563)
+++....... ...+..+.|.++...++...++.|++|++..+...... .++...| .+++|+
T Consensus 99 ~g~~~~~~~l-~~~~~~~~~SPDG~~la~~~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wS 177 (719)
T 1z68_A 99 NGEFVRGNEL-PRPIQYLCWSPVGSKLAYVYQNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWS 177 (719)
T ss_dssp TTEECCSSCC-CSSBCCEEECSSTTCEEEEETTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEEC
T ss_pred CCccccceec-CcccccceECCCCCEEEEEECCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEEC
Confidence 8876211111 23466788887665444445889999999776654332 2332222 589999
Q ss_pred CCCCEEEEEeCCC----------------------------------cEEEEeCCCCcee--------eeecccCCCEEE
Q 008496 408 PTGSLLASCSDDV----------------------------------TAKIWNMKQDKYV--------HDLREHSKEIYT 445 (563)
Q Consensus 408 ~~~~~las~s~dg----------------------------------~i~iwd~~~~~~~--------~~~~~~~~~i~~ 445 (563)
|||+.||+++.|. .|++||+.++... ..+..|...+.+
T Consensus 178 PDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (719)
T 1z68_A 178 PNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSW 257 (719)
T ss_dssp TTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEE
T ss_pred CCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEE
Confidence 9999999988652 7889999887642 223457788999
Q ss_pred EEEccCCCCCCCCCCcEEEEEEeCC----CeEEEEe----CCCCeEEEEe----cCCCCCEE-----EEEEcCCCCEEEE
Q 008496 446 IRWSPTGSGTNNPNQQLILASASFD----STVKLWD----VELGKLLYSL----NGHREPVY-----SLAFSPTGEYLAS 508 (563)
Q Consensus 446 ~~~~p~~~~~~~~~~~~~l~s~s~d----g~i~iwd----~~~~~~~~~~----~~h~~~i~-----~l~~spdg~~las 508 (563)
++|+|++. ++++.... ..|.+|| +.++++...+ .+|...+. .++|||||+.|+.
T Consensus 258 ~~~SpD~~---------~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~ 328 (719)
T 1z68_A 258 LTWVTDER---------VCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYK 328 (719)
T ss_dssp EEESSSSE---------EEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEE
T ss_pred eEEeCCCe---------EEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEE
Confidence 99999863 45553322 2488899 8777765444 36666666 8899999996654
Q ss_pred --EeCCC--cEEEEecCCCeeEEEEecCCCEEEEEEcCCCCEEEEEECC-----CeEEEEEee
Q 008496 509 --GSLDK--SMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFAN-----HTVCVLDFR 562 (563)
Q Consensus 509 --gs~dg--~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~g~~la~~~~~-----~~v~v~~~~ 562 (563)
...+| .|.+|++.+++......+...+..+.|. +|+.|++...+ +...||.+.
T Consensus 329 ~~~~~~g~~~l~~~~~~~~~~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~ 390 (719)
T 1z68_A 329 IFSDKDGYKHIHYIKDTVENAIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRIS 390 (719)
T ss_dssp EEECTTSCEEEEEESSCSTTCEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEE
T ss_pred EEEccCCceEEEEEECCCCceEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEe
Confidence 44555 5777788777643222234457777766 89888887765 677787654
No 162
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.85 E-value=1.9e-19 Score=181.45 Aligned_cols=274 Identities=13% Similarity=0.106 Sum_probs=183.5
Q ss_pred EEECCCCCEEEEEeC-CC--eEEEEEcCCceeE-eeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeee
Q 008496 280 LDWNGEGTLLATGSY-DG--QARIWSTNGDLKC-TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEF 355 (563)
Q Consensus 280 l~~s~~g~~l~sg~~-dg--~i~vw~~~~~~~~-~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~ 355 (563)
.+|||||++|+.++. +| .|.+|+..+.... ....+...+..+.|+|+|++|+.++.++.+++||+.+++....+..
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~ 120 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQV 120 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEEC
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeec
Confidence 689999999999887 66 4888887655443 4445555555778999999999999999999999999887666555
Q ss_pred cccCeEEEec--CCCc-eEEE----------------------EeCCCeEEEEEcCCCcceeeecCCCcceeEEEECC-C
Q 008496 356 HSGPTLDVDW--RNNV-SFAT----------------------SSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP-T 409 (563)
Q Consensus 356 ~~~~~~~~~~--~~~~-~~~~----------------------~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~-~ 409 (563)
+...+....| ..+. .++. ...+..|+++++.++... .+..+...+..++|+| +
T Consensus 121 ~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~-~l~~~~~~~~~~~~sp~d 199 (388)
T 3pe7_A 121 PAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGEST-VILQENQWLGHPIYRPYD 199 (388)
T ss_dssp CTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEE-EEEEESSCEEEEEEETTE
T ss_pred hhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceE-EeecCCccccccEECCCC
Confidence 4443322333 2332 3321 123467899998877543 4445666789999999 9
Q ss_pred CCEEEEEeCC------CcEEEEeCCCCceeeeecccC--CCEEEEEEccCCCCCCCCCCcEEEEEEeCCC---eEEEEeC
Q 008496 410 GSLLASCSDD------VTAKIWNMKQDKYVHDLREHS--KEIYTIRWSPTGSGTNNPNQQLILASASFDS---TVKLWDV 478 (563)
Q Consensus 410 ~~~las~s~d------g~i~iwd~~~~~~~~~~~~~~--~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg---~i~iwd~ 478 (563)
|+.|+.++.+ ..|.++|...+.. ..+..+. ..+..+.|+|+|.. +++++...++ .|++||+
T Consensus 200 g~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg~~-------l~~~~~~~~~~~~~l~~~d~ 271 (388)
T 3pe7_A 200 DSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESCTHEFWVPDGSA-------LVYVSYLKGSPDRFIYSADP 271 (388)
T ss_dssp EEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEEEEEEECTTSSC-------EEEEEEETTCCCEEEEEECT
T ss_pred CCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCcccccceECCCCCE-------EEEEecCCCCCcceEEEEec
Confidence 9999887764 3677788766543 3344343 35778899999862 2222322222 3999999
Q ss_pred CCCeE--EEEecCCCCC---EEEEEEcCCCCEEEEE---------eCCCcEEEEecCCCeeEEEEecCC-----------
Q 008496 479 ELGKL--LYSLNGHREP---VYSLAFSPTGEYLASG---------SLDKSMHIWSLKEGKIVKTYTGNG----------- 533 (563)
Q Consensus 479 ~~~~~--~~~~~~h~~~---i~~l~~spdg~~lasg---------s~dg~v~iw~~~~~~~~~~~~~~~----------- 533 (563)
.+++. +..+.++... ...++|||||++|+.. ..+..|++||+.++++........
T Consensus 272 ~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~ 351 (388)
T 3pe7_A 272 ETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQV 351 (388)
T ss_dssp TTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEEEEEECCCCCCCBTTBSST
T ss_pred CCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEeccccCccccccccccc
Confidence 98874 3333331100 1123799999988753 456789999999887654443333
Q ss_pred CEEEEEEcCCCCEEEEEEC-CCeEEEEEee
Q 008496 534 GIFEVCWNKEGDKIAACFA-NHTVCVLDFR 562 (563)
Q Consensus 534 ~i~~l~w~~~g~~la~~~~-~~~v~v~~~~ 562 (563)
.+..++|+|||+.|++++. ++...||.+.
T Consensus 352 ~~~~~~~spDg~~l~~~s~~~g~~~l~~~~ 381 (388)
T 3pe7_A 352 THPHPSFTPDDKQILFTSDVHGKPALYLAT 381 (388)
T ss_dssp TCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred CCCCccCCCCCCEEEEEecCCCceeEEEEE
Confidence 3678899999999987754 5666666543
No 163
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.84 E-value=5.6e-18 Score=169.02 Aligned_cols=256 Identities=12% Similarity=0.080 Sum_probs=171.7
Q ss_pred CCeEEEEECCCCCEEEEEeCC----CeEEEEEcCC---cee--EeeccCCCCEEEEEeCCCCCEEEEee-CCCcEEEEEC
Q 008496 275 KDVTTLDWNGEGTLLATGSYD----GQARIWSTNG---DLK--CTLSKHKGPIFSLKWNKKGDYLLTGS-CDKTAIVWDV 344 (563)
Q Consensus 275 ~~V~~l~~s~~g~~l~sg~~d----g~i~vw~~~~---~~~--~~~~~h~~~V~~l~~~~~~~~l~s~s-~D~~v~iwd~ 344 (563)
..+..++|+|+|++|++++.+ +.+.+|+.+. .+. .....+......+++ ++++|++++ .++++.+|++
T Consensus 50 ~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~ 127 (361)
T 3scy_A 50 ANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPI 127 (361)
T ss_dssp SCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEB
T ss_pred CCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEe
Confidence 456779999999999999886 7999998653 222 233345556777887 788777666 5889999998
Q ss_pred CCCceeEEe---eecc-----------cCeEEEecCCCc--eEEEEeCCCeEEEEEcCCCcc------e-------eeec
Q 008496 345 KTEEWKQQF---EFHS-----------GPTLDVDWRNNV--SFATSSTDNMIYVCKIGENRP------I-------KTFA 395 (563)
Q Consensus 345 ~~~~~~~~~---~~~~-----------~~~~~~~~~~~~--~~~~~~~d~~i~~~~~~~~~~------~-------~~~~ 395 (563)
........+ ..+. ..+..+.|.++. .+++...++.|++|++..... + ....
T Consensus 128 ~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~ 207 (361)
T 3scy_A 128 GQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKV 207 (361)
T ss_dssp CTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEEC
T ss_pred CCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceec
Confidence 754322111 1111 123557776654 345555688999998875431 1 1122
Q ss_pred CCCcceeEEEECCCCCEEEEEe-CCCcEEEEeCCCCce--eeee---cccCCCEEEEEEccCCCCCCCCCCcEEEEEEeC
Q 008496 396 GHQGEVNCVKWDPTGSLLASCS-DDVTAKIWNMKQDKY--VHDL---REHSKEIYTIRWSPTGSGTNNPNQQLILASASF 469 (563)
Q Consensus 396 ~h~~~i~~~~~~~~~~~las~s-~dg~i~iwd~~~~~~--~~~~---~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~ 469 (563)
.+...+..++|+|+|+++++++ .++.|.+|++.++.. +..+ ..+......++|+|+|. .++++...
T Consensus 208 ~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~--------~l~v~~~~ 279 (361)
T 3scy_A 208 APGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGK--------YLYASNRL 279 (361)
T ss_dssp CTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSS--------EEEEEECS
T ss_pred CCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCC--------EEEEECCC
Confidence 3345578999999999887766 689999999986654 2222 22334568999999985 23344545
Q ss_pred -CCeEEEEeCC--CCe--EEEEecCCCCCEEEEEEcCCCCEEEEEe-CCCcEEEE--ecCCCeeEEEEe--cCCCEEEEE
Q 008496 470 -DSTVKLWDVE--LGK--LLYSLNGHREPVYSLAFSPTGEYLASGS-LDKSMHIW--SLKEGKIVKTYT--GNGGIFEVC 539 (563)
Q Consensus 470 -dg~i~iwd~~--~~~--~~~~~~~h~~~i~~l~~spdg~~lasgs-~dg~v~iw--~~~~~~~~~~~~--~~~~i~~l~ 539 (563)
++.|.+|++. +++ .+..+.. ...+.+++|+|||++|++++ .++.|.+| |..+|++..... ....+.++.
T Consensus 280 ~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~ 358 (361)
T 3scy_A 280 KADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLK 358 (361)
T ss_dssp SSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEE
T ss_pred CCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEE
Confidence 6899999985 444 3444444 45678999999999998887 67899996 555777654321 224577787
Q ss_pred Ec
Q 008496 540 WN 541 (563)
Q Consensus 540 w~ 541 (563)
|.
T Consensus 359 ~~ 360 (361)
T 3scy_A 359 FV 360 (361)
T ss_dssp EE
T ss_pred Ec
Confidence 75
No 164
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.82 E-value=2.4e-17 Score=164.83 Aligned_cols=265 Identities=14% Similarity=0.133 Sum_probs=177.2
Q ss_pred EEEEEeCC--CeEEEEEc--C-CceeEe--ec-cCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECC-CCceeEEeeec-c
Q 008496 288 LLATGSYD--GQARIWST--N-GDLKCT--LS-KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVK-TEEWKQQFEFH-S 357 (563)
Q Consensus 288 ~l~sg~~d--g~i~vw~~--~-~~~~~~--~~-~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~-~~~~~~~~~~~-~ 357 (563)
++++|++. +.|.+|+. . +.+... .. .....+..++|+|+|++|++++.+ +|.+||+. +++........ .
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~ 82 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG 82 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC
Confidence 35556654 46777654 2 333211 11 233467789999999999999888 99999997 77665433321 1
Q ss_pred cCeEEEecCCCce--EE-EEe-------------CCCeEEEEEcCC-Ccceeeec----CCCcceeEEEECCCCCEEEEE
Q 008496 358 GPTLDVDWRNNVS--FA-TSS-------------TDNMIYVCKIGE-NRPIKTFA----GHQGEVNCVKWDPTGSLLASC 416 (563)
Q Consensus 358 ~~~~~~~~~~~~~--~~-~~~-------------~d~~i~~~~~~~-~~~~~~~~----~h~~~i~~~~~~~~~~~las~ 416 (563)
+.+..+.|.++.. ++ ++. .++.+.+|++.. +.....+. .+...+.+++|+|+|++|+++
T Consensus 83 g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~ 162 (365)
T 1jof_A 83 GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSA 162 (365)
T ss_dssp SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEE
T ss_pred CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEE
Confidence 2344466766655 33 332 688999999974 33332222 245678999999999988776
Q ss_pred eC-CCcEEEEeCC-CCcee--eeec--ccCCCEEEEEEccCCCCCCCCCCcEEEEEEe-CCCeEEEEeCC--CCeEEE--
Q 008496 417 SD-DVTAKIWNMK-QDKYV--HDLR--EHSKEIYTIRWSPTGSGTNNPNQQLILASAS-FDSTVKLWDVE--LGKLLY-- 485 (563)
Q Consensus 417 s~-dg~i~iwd~~-~~~~~--~~~~--~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s-~dg~i~iwd~~--~~~~~~-- 485 (563)
.. ++.|++|++. +++.. ..+. .|...+..++|+|+|. +|++++ .++.|.+|++. +++...
T Consensus 163 ~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~---------~l~v~~~~~~~v~v~~~~~~~g~~~~~~ 233 (365)
T 1jof_A 163 DLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGN---------YLYALMEAGNRICEYVIDPATHMPVYTH 233 (365)
T ss_dssp ETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSS---------EEEEEETTTTEEEEEEECTTTCCEEEEE
T ss_pred cCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCC---------EEEEEECCCCeEEEEEEeCCCCcEEEcc
Confidence 54 6799999998 66542 2333 2356689999999885 444444 57899999765 565432
Q ss_pred -Eec-------CCCC------CEEEEE-EcCCCCEEEEEeCC-C-----cEEEEecC-CCeeEEE---Eec-CCCEEEEE
Q 008496 486 -SLN-------GHRE------PVYSLA-FSPTGEYLASGSLD-K-----SMHIWSLK-EGKIVKT---YTG-NGGIFEVC 539 (563)
Q Consensus 486 -~~~-------~h~~------~i~~l~-~spdg~~lasgs~d-g-----~v~iw~~~-~~~~~~~---~~~-~~~i~~l~ 539 (563)
.+. +|.. .+..++ |||||++|++++.+ . .|.+|++. +|++... ... ...+..++
T Consensus 234 ~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a 313 (365)
T 1jof_A 234 HSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNA 313 (365)
T ss_dssp EEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCC
T ss_pred ceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccce
Confidence 221 1222 478999 99999998876543 2 89999996 6775542 222 23456789
Q ss_pred EcC---CCCEEEEEEC-CCeEEEEEee
Q 008496 540 WNK---EGDKIAACFA-NHTVCVLDFR 562 (563)
Q Consensus 540 w~~---~g~~la~~~~-~~~v~v~~~~ 562 (563)
|+| ||++|+++.. ++.|.||++.
T Consensus 314 ~sp~~~dg~~l~v~~~~~~~v~v~~~~ 340 (365)
T 1jof_A 314 VSPCPWSDEWMAITDDQEGWLEIYRWK 340 (365)
T ss_dssp EEECTTCTTEEEEECSSSCEEEEEEEE
T ss_pred ecCCCcCCCEEEEEEcCCCeEEEEEEc
Confidence 999 8999999876 4899999874
No 165
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.81 E-value=1.6e-18 Score=174.93 Aligned_cols=271 Identities=12% Similarity=0.050 Sum_probs=179.2
Q ss_pred eEEEEECCCCCEEEEEeCC---CeEEEEEcCCceeEeeccCCCCEE-EEEeCCCCCEEEEeeCCCcEEEEECCCCceeEE
Q 008496 277 VTTLDWNGEGTLLATGSYD---GQARIWSTNGDLKCTLSKHKGPIF-SLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQ 352 (563)
Q Consensus 277 V~~l~~s~~g~~l~sg~~d---g~i~vw~~~~~~~~~~~~h~~~V~-~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~ 352 (563)
+..++|||||++|+..... ..+.+|+..+.....+..+...+. .+.|+|+|++|+.++.++.|.+||+.+++....
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~ 117 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVI 117 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEE
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEE
Confidence 5567899999998877543 478888987665555544444333 378999999999999999999999998876655
Q ss_pred eeecccCeEE-------------------EecCCCce-EEEE-----eCCCeEEEEEcCCCcceeeecCCCcceeEEEEC
Q 008496 353 FEFHSGPTLD-------------------VDWRNNVS-FATS-----STDNMIYVCKIGENRPIKTFAGHQGEVNCVKWD 407 (563)
Q Consensus 353 ~~~~~~~~~~-------------------~~~~~~~~-~~~~-----~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~ 407 (563)
+..+.....+ ..|.++.. ++.. ..+..|++|++..++..... .+...+..+.|+
T Consensus 118 ~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~s 196 (396)
T 3c5m_A 118 YTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLGHPIYR 196 (396)
T ss_dssp EECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEE
T ss_pred EecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCcccccceEC
Confidence 4433321111 12222211 1111 34567899998876654443 466678899999
Q ss_pred C-CCCEEEEEeCC------CcEEEEeCCCCceeeeeccc--CCCEEEEEEccCCCCCCCCCCcEEEEEEeCC-----CeE
Q 008496 408 P-TGSLLASCSDD------VTAKIWNMKQDKYVHDLREH--SKEIYTIRWSPTGSGTNNPNQQLILASASFD-----STV 473 (563)
Q Consensus 408 ~-~~~~las~s~d------g~i~iwd~~~~~~~~~~~~~--~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~d-----g~i 473 (563)
| +++.|+.++.+ ..|.+||+.++... .+..+ ...+..+.|+|+|. .|+.++.+ +.|
T Consensus 197 p~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~---------~l~~~~~~~~~~~~~l 266 (396)
T 3c5m_A 197 PFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHAEGESCTHEFWIPDGS---------AMAYVSYFKGQTDRVI 266 (396)
T ss_dssp TTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCCCTTEEEEEEEECTTSS---------CEEEEEEETTTCCEEE
T ss_pred CCCCCEEEEEecCCCCCCCceEEEEECCCCcee-EeeccCCCccccceEECCCCC---------EEEEEecCCCCccceE
Confidence 9 78877776653 35888888765533 23323 23578899999885 23333332 459
Q ss_pred EEEeCCCCeEEEEecCCCCCEEEEEEcC-CCCEEEEEe----------------CCCcEEEEecCCCeeEEEEecCC---
Q 008496 474 KLWDVELGKLLYSLNGHREPVYSLAFSP-TGEYLASGS----------------LDKSMHIWSLKEGKIVKTYTGNG--- 533 (563)
Q Consensus 474 ~iwd~~~~~~~~~~~~h~~~i~~l~~sp-dg~~lasgs----------------~dg~v~iw~~~~~~~~~~~~~~~--- 533 (563)
++||+.+++...... .. ... ++|+| ||++|++++ .++.|++||+.++++........
T Consensus 267 ~~~d~~~g~~~~l~~-~~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~ 343 (396)
T 3c5m_A 267 YKANPETLENEEVMV-MP-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWD 343 (396)
T ss_dssp EEECTTTCCEEEEEE-CC-SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEEECCCCCC
T ss_pred EEEECCCCCeEEeee-CC-CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEccCCCCccc
Confidence 999998886543222 11 233 89999 999988765 34789999998887543333322
Q ss_pred --------CEEEEEEcCCCCEEEEEEC-CCeEEEEEe
Q 008496 534 --------GIFEVCWNKEGDKIAACFA-NHTVCVLDF 561 (563)
Q Consensus 534 --------~i~~l~w~~~g~~la~~~~-~~~v~v~~~ 561 (563)
.+..++|+|||+.|++++. ++...||-+
T Consensus 344 ~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~ 380 (396)
T 3c5m_A 344 VLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIA 380 (396)
T ss_dssp CBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred cccccccCCCCCceEccCCCeEEEEecCCCCceEEEE
Confidence 1567899999999988765 455555543
No 166
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.81 E-value=4.5e-18 Score=184.12 Aligned_cols=285 Identities=9% Similarity=0.043 Sum_probs=185.9
Q ss_pred EecCCCCceEEEEECCCCCEEEEe--eCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeE---------
Q 008496 210 ILEGHTSEVCACAWSPAGSLLASG--SGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVT--------- 278 (563)
Q Consensus 210 ~l~~h~~~V~~~~~sp~~~~latg--s~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~--------- 278 (563)
.+.+|...|..++|++++-+++++ +.++..+||....+... +.+.. +...|.
T Consensus 18 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------------~~l~~----~~~~~~~~~~~~~~~ 80 (662)
T 3azo_A 18 LVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAE-------------ESALP----APWNVRNRVFEYSGF 80 (662)
T ss_dssp HHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCE-------------EESSC----TTCCBCCCGGGTCCC
T ss_pred HHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCc-------------ceeCC----CCccccccccccCCc
Confidence 467889999999999887777777 56889999986332110 01100 111222
Q ss_pred EEEEC--CCCCE-EEEEeC-CCeEEEEEcC--C-ceeEeecc-----CCCCEEEEEeCCCCCEEEEeeCC----------
Q 008496 279 TLDWN--GEGTL-LATGSY-DGQARIWSTN--G-DLKCTLSK-----HKGPIFSLKWNKKGDYLLTGSCD---------- 336 (563)
Q Consensus 279 ~l~~s--~~g~~-l~sg~~-dg~i~vw~~~--~-~~~~~~~~-----h~~~V~~l~~~~~~~~l~s~s~D---------- 336 (563)
...|+ |||+. |+.++. +..|.+|+.. + .....+.. |...+.+++|+|+|++|++++.|
T Consensus 81 ~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~ 160 (662)
T 3azo_A 81 PWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVR 160 (662)
T ss_dssp CEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEE
T ss_pred cceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCce
Confidence 34455 99998 776654 5677788876 3 44445555 67788999999999999988866
Q ss_pred CcEEEEECCCCceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCC-Ccceeeec-CCCcceeEEEECCCCCEEE
Q 008496 337 KTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGE-NRPIKTFA-GHQGEVNCVKWDPTGSLLA 414 (563)
Q Consensus 337 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~-~~~~~~~~-~h~~~i~~~~~~~~~~~la 414 (563)
.+|.+||+.+.... . .. ...+. .+...+..++|+|||+.|+
T Consensus 161 ~~i~~~~~~~~~~~------------------------------------~~~~-~~~l~~~~~~~~~~~~~SpDG~~la 203 (662)
T 3azo_A 161 RFLAAVPLDGSAAA------------------------------------DRSA-VRELSDDAHRFVTGPRLSPDGRQAV 203 (662)
T ss_dssp EEEEEEETTSTTTT------------------------------------CGGG-SEESSCSCSSEECCCEECTTSSEEE
T ss_pred eEEEEEECCCCccc------------------------------------cCCc-eeEEEecCCCcccCceECCCCCEEE
Confidence 34555555441000 0 11 22233 4445677899999999999
Q ss_pred EEeCC--------CcEEEEeCC-CC---ceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCC--eEEEEeCCC
Q 008496 415 SCSDD--------VTAKIWNMK-QD---KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDS--TVKLWDVEL 480 (563)
Q Consensus 415 s~s~d--------g~i~iwd~~-~~---~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg--~i~iwd~~~ 480 (563)
.++.+ ..|++||+. ++ ........|...+..+.|+|+|. ++++++.++ .|.+||+.+
T Consensus 204 ~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~---------l~~~~~~~~~~~l~~~~~~~ 274 (662)
T 3azo_A 204 WLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGS---------LIVATDRTGWWNLHRVDPAT 274 (662)
T ss_dssp EEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSC---------EEEEECTTSSCEEEEECTTT
T ss_pred EEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCe---------EEEEECCCCCeEEEEEECCC
Confidence 88755 479999998 46 33333344567899999999885 677788888 677777766
Q ss_pred CeEEEEecCCCCC--------EEEEEEcCCCCEEEEEeCCCcEEEE--ecCCCeeEEEEecCC-CEEEEEEcCCCCEEEE
Q 008496 481 GKLLYSLNGHREP--------VYSLAFSPTGEYLASGSLDKSMHIW--SLKEGKIVKTYTGNG-GIFEVCWNKEGDKIAA 549 (563)
Q Consensus 481 ~~~~~~~~~h~~~--------i~~l~~spdg~~lasgs~dg~v~iw--~~~~~~~~~~~~~~~-~i~~l~w~~~g~~la~ 549 (563)
++.......+... +.+++|+|+++++++++. +.++|| |+.+++ ++.+.... .+..+ |+++|+.++.
T Consensus 275 ~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~~~~~~~-~s~~~~~~~~ 351 (662)
T 3azo_A 275 GAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDAAGPWTEWAAT-LTVSGTRAVG 351 (662)
T ss_dssp CCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECCSSCCEEEEE-EEEETTEEEE
T ss_pred CceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEecCCCCeEEEE-EecCCCEEEE
Confidence 7654333333222 567899999999999998 999999 555565 45554433 34444 3566665543
Q ss_pred --EECCCeEEEEE
Q 008496 550 --CFANHTVCVLD 560 (563)
Q Consensus 550 --~~~~~~v~v~~ 560 (563)
++.+....||.
T Consensus 352 ~~~~~~~~~~i~~ 364 (662)
T 3azo_A 352 VAASPRTAYEVVE 364 (662)
T ss_dssp EEEETTEEEEEEE
T ss_pred EEcCCCCCCEEEE
Confidence 34444444543
No 167
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.81 E-value=1e-17 Score=168.81 Aligned_cols=285 Identities=12% Similarity=-0.000 Sum_probs=182.2
Q ss_pred eeEecCCCCceEE-----EEECCCCCEEEEeeC-CCc--EEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEE
Q 008496 208 VTILEGHTSEVCA-----CAWSPAGSLLASGSG-DST--ARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTT 279 (563)
Q Consensus 208 ~~~l~~h~~~V~~-----~~~sp~~~~latgs~-D~~--i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~ 279 (563)
+..|..|...+.. .+|||||++||.++. ++. +.+|++.++... .. ...+...+..
T Consensus 23 ~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~--------------~l---t~~~~~~~~~ 85 (388)
T 3pe7_A 23 VTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVAT--------------QL---TEGRGDNTFG 85 (388)
T ss_dssp EEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEE--------------EC---CCSSCBCSSS
T ss_pred eEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceE--------------Ee---eeCCCCCccc
Confidence 3455566655555 789999999998887 674 777777654311 00 0111222335
Q ss_pred EEECCCCCEEEEEeCCCeEEEEEcCCce-eEeeccCCCCEEEEE--eCCCCCEEEEe----------------------e
Q 008496 280 LDWNGEGTLLATGSYDGQARIWSTNGDL-KCTLSKHKGPIFSLK--WNKKGDYLLTG----------------------S 334 (563)
Q Consensus 280 l~~s~~g~~l~sg~~dg~i~vw~~~~~~-~~~~~~h~~~V~~l~--~~~~~~~l~s~----------------------s 334 (563)
+.|+|||+.|+.++.++.+++|+..+.. ......+...+.... ++|++.+++.. .
T Consensus 86 ~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (388)
T 3pe7_A 86 GFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTK 165 (388)
T ss_dssp CEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGC
T ss_pred eEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccC
Confidence 6899999999999999999999987543 334444555454444 48999988742 2
Q ss_pred CCCcEEEEECCCCceeEEeeecccCeEEEecCC-Cc-eEEEEeC------CCeEEEEEcCCCcceeeecCCC--cceeEE
Q 008496 335 CDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN-NV-SFATSST------DNMIYVCKIGENRPIKTFAGHQ--GEVNCV 404 (563)
Q Consensus 335 ~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~------d~~i~~~~~~~~~~~~~~~~h~--~~i~~~ 404 (563)
.+..|.+||+.+++.... ..+...+..+.|.+ +. .++.+.. ...|++++....... .+..+. ..+..+
T Consensus 166 ~~~~l~~~d~~~g~~~~l-~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~ 243 (388)
T 3pe7_A 166 PCCRLMRVDLKTGESTVI-LQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMR-KVKTHAEGESCTHE 243 (388)
T ss_dssp CCEEEEEEETTTCCEEEE-EEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCE-ESCCCCTTEEEEEE
T ss_pred CcceEEEEECCCCceEEe-ecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceE-EeeeCCCCcccccc
Confidence 446899999998875543 33445567778876 54 3444443 337888887655443 333333 357789
Q ss_pred EECCCCCEEEEEeC-C----CcEEEEeCCCCcee--eeecccCCC---EEEEEEccCCCCCCCCCCcEEEEE--------
Q 008496 405 KWDPTGSLLASCSD-D----VTAKIWNMKQDKYV--HDLREHSKE---IYTIRWSPTGSGTNNPNQQLILAS-------- 466 (563)
Q Consensus 405 ~~~~~~~~las~s~-d----g~i~iwd~~~~~~~--~~~~~~~~~---i~~~~~~p~~~~~~~~~~~~~l~s-------- 466 (563)
+|+|||+.|+..+. + +.|.+||+.+++.. ..+..+... ...+.|+|+|.. ++++
T Consensus 244 ~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~--------l~~~~~~~~~~~ 315 (388)
T 3pe7_A 244 FWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSD--------APVDVQDDSGYK 315 (388)
T ss_dssp EECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECC--------C-----------
T ss_pred eECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCc--------ceeEeeeccccc
Confidence 99999997765443 2 23999999888642 222221000 011267887752 2222
Q ss_pred EeCCCeEEEEeCCCCeEEEEecCCCC-----------CEEEEEEcCCCCEEEEEe-CCCcEEEEec
Q 008496 467 ASFDSTVKLWDVELGKLLYSLNGHRE-----------PVYSLAFSPTGEYLASGS-LDKSMHIWSL 520 (563)
Q Consensus 467 ~s~dg~i~iwd~~~~~~~~~~~~h~~-----------~i~~l~~spdg~~lasgs-~dg~v~iw~~ 520 (563)
...+..|++||+.+++. ..+..+.. .+.+++|||||++|+.++ .+|...||.+
T Consensus 316 ~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~ 380 (388)
T 3pe7_A 316 IENDPFLYVFNMKNGTQ-HRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLA 380 (388)
T ss_dssp -CCCCEEEEEETTTTEE-EEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred cCCCCEEEEEeccCCce-EEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEE
Confidence 25577999999998765 34544544 578899999999888766 4676666654
No 168
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.80 E-value=2.8e-17 Score=163.80 Aligned_cols=280 Identities=9% Similarity=0.100 Sum_probs=188.6
Q ss_pred CCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeC----------CCeEEEEEcC
Q 008496 235 GDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY----------DGQARIWSTN 304 (563)
Q Consensus 235 ~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~----------dg~i~vw~~~ 304 (563)
.|+.+.+||..+++.. ..+.. ...+ .++|+|||++++++.. ++.|.+||..
T Consensus 29 ~d~~v~v~D~~t~~~~-------------~~i~~----g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~ 89 (361)
T 2oiz_A 29 TESRVHVYDYTNGKFL-------------GMVPT----AFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDAD 89 (361)
T ss_dssp GGCEEEEEETTTCCEE-------------EEEEC----CEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETT
T ss_pred ccCeEEEEECCCCeEE-------------EEecC----CCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECc
Confidence 4789999998665321 11111 1122 7899999999999863 5789999976
Q ss_pred C-ceeEeecc------CCCCEEEEEeCCCCCEEEEeeC--CCcEEEEECCCCceeEE-eeecccCeEEEecCCCceEEEE
Q 008496 305 G-DLKCTLSK------HKGPIFSLKWNKKGDYLLTGSC--DKTAIVWDVKTEEWKQQ-FEFHSGPTLDVDWRNNVSFATS 374 (563)
Q Consensus 305 ~-~~~~~~~~------h~~~V~~l~~~~~~~~l~s~s~--D~~v~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 374 (563)
. +....+.. +......++++|+|++|++++. +++|.+||+.+++.+.. +.........+.......+++.
T Consensus 90 t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~ 169 (361)
T 2oiz_A 90 KLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTI 169 (361)
T ss_dssp TCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEE
T ss_pred CCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEE
Confidence 3 44444432 2234567899999999998864 68999999999887765 4322111111222234577888
Q ss_pred eCCCeEEEEEcCC-Ccce------eeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCcee--eeecc------c
Q 008496 375 STDNMIYVCKIGE-NRPI------KTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYV--HDLRE------H 439 (563)
Q Consensus 375 ~~d~~i~~~~~~~-~~~~------~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~--~~~~~------~ 439 (563)
+.|+.+.+++... ++.. ..+..+...+ .+.+++++..++..+.++.+.++|+...... ..+.. +
T Consensus 170 ~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~ 248 (361)
T 2oiz_A 170 CGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKA 248 (361)
T ss_dssp ETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHH
T ss_pred CCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccc
Confidence 8899988888754 3322 1222222222 2333567777777888999999998654321 11110 0
Q ss_pred C----CCEEEEEEccCCCCCCCCCCcEEEEEEe----------CCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCE
Q 008496 440 S----KEIYTIRWSPTGSGTNNPNQQLILASAS----------FDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEY 505 (563)
Q Consensus 440 ~----~~i~~~~~~p~~~~~~~~~~~~~l~s~s----------~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~ 505 (563)
. .....++++|++. .++++.+ ..+.|.+||+.+++.+.++..+. +.+++|+|||++
T Consensus 249 ~~~~p~g~~~~a~~~dg~--------~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~ 318 (361)
T 2oiz_A 249 KNWVPGGYNLVGLHRASG--------RMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNL 318 (361)
T ss_dssp TTCEECCSSCEEEETTTT--------EEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTE
T ss_pred cccccCCeeEEEEecCCC--------eEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCE
Confidence 0 0011256677653 3444443 13589999999999999998776 899999999999
Q ss_pred EEEEeCCCcEEEEecCCC--eeEEEEe-cCCCEEEEEEcCCCC
Q 008496 506 LASGSLDKSMHIWSLKEG--KIVKTYT-GNGGIFEVCWNKEGD 545 (563)
Q Consensus 506 lasgs~dg~v~iw~~~~~--~~~~~~~-~~~~i~~l~w~~~g~ 545 (563)
|++++. +.|.+||..++ ++++++. .......++++|+|.
T Consensus 319 l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 319 MLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp EEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred EEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 998887 99999999999 9999874 455678999999985
No 169
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.79 E-value=3.5e-16 Score=150.52 Aligned_cols=235 Identities=14% Similarity=0.262 Sum_probs=176.0
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCceeEeec------cCCCCEEEEEe-CCCCCEEEEeeC-CCcEEEEECC
Q 008496 274 SKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLS------KHKGPIFSLKW-NKKGDYLLTGSC-DKTAIVWDVK 345 (563)
Q Consensus 274 ~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~------~h~~~V~~l~~-~~~~~~l~s~s~-D~~v~iwd~~ 345 (563)
...+.+++++++|+++++...++.|++|+.++.....+. .|...+.++++ .++++.+++... ++.|.+|| .
T Consensus 29 ~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~ 107 (286)
T 1q7f_A 29 FTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-Q 107 (286)
T ss_dssp BSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-T
T ss_pred cCCCceEEECCCCCEEEEECCCCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-C
Confidence 356889999999999998889999999998887666553 24457899999 567766666543 78999998 4
Q ss_pred CCceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEE
Q 008496 346 TEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIW 425 (563)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iw 425 (563)
++.....+. ..+...+.+++++|+|+++++.+.++.|.+|
T Consensus 108 ~g~~~~~~~----------------------------------------~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~ 147 (286)
T 1q7f_A 108 YGQFVRKFG----------------------------------------ATILQHPRGVTVDNKGRIIVVECKVMRVIIF 147 (286)
T ss_dssp TSCEEEEEC----------------------------------------TTTCSCEEEEEECTTSCEEEEETTTTEEEEE
T ss_pred CCcEEEEec----------------------------------------CccCCCceEEEEeCCCCEEEEECCCCEEEEE
Confidence 443322110 0123456789999999998888889999999
Q ss_pred eCCCCceeeeec--ccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCC--CCCEEEEEEcC
Q 008496 426 NMKQDKYVHDLR--EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH--REPVYSLAFSP 501 (563)
Q Consensus 426 d~~~~~~~~~~~--~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h--~~~i~~l~~sp 501 (563)
|.. ++.+..+. .+...+..++++|++. ++++.+.++.|++||.. ++.+..+..+ ...+..++++|
T Consensus 148 ~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~---------l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~ 216 (286)
T 1q7f_A 148 DQN-GNVLHKFGCSKHLEFPNGVVVNDKQE---------IFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINS 216 (286)
T ss_dssp CTT-SCEEEEEECTTTCSSEEEEEECSSSE---------EEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECT
T ss_pred cCC-CCEEEEeCCCCccCCcEEEEECCCCC---------EEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECC
Confidence 965 44444443 3445688999998763 66777778999999974 6666666443 35689999999
Q ss_pred CCCEEEEEeCCC-cEEEEecCCCeeEEEEecCC---CEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496 502 TGEYLASGSLDK-SMHIWSLKEGKIVKTYTGNG---GIFEVCWNKEGDKIAACFANHTVCVLDFR 562 (563)
Q Consensus 502 dg~~lasgs~dg-~v~iw~~~~~~~~~~~~~~~---~i~~l~w~~~g~~la~~~~~~~v~v~~~~ 562 (563)
+|+++++...++ .|.+|+. +++.+..+.... .+.+++|+|+|+.+++ ..+++|.||++.
T Consensus 217 ~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~ 279 (286)
T 1q7f_A 217 NGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYV 279 (286)
T ss_dssp TCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECS
T ss_pred CCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcc
Confidence 999999888886 9999995 567777765432 3789999999987666 578999999874
No 170
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.79 E-value=1.3e-16 Score=156.92 Aligned_cols=248 Identities=11% Similarity=0.140 Sum_probs=183.0
Q ss_pred CCCeEEEEECCCCCEEEEEeCC------------------------CeEEEEEcC-CceeEeec-cCCCCEEEEEeCCCC
Q 008496 274 SKDVTTLDWNGEGTLLATGSYD------------------------GQARIWSTN-GDLKCTLS-KHKGPIFSLKWNKKG 327 (563)
Q Consensus 274 ~~~V~~l~~s~~g~~l~sg~~d------------------------g~i~vw~~~-~~~~~~~~-~h~~~V~~l~~~~~~ 327 (563)
-..|.+++++++|+++++...+ +.|.+||.. +.+...+. .+-....+++++|+|
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 4679999999999999988877 479999985 66655443 444678999999999
Q ss_pred CEEEEeeCCCcEEEEECCCCc-eeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEE
Q 008496 328 DYLLTGSCDKTAIVWDVKTEE-WKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKW 406 (563)
Q Consensus 328 ~~l~s~s~D~~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~ 406 (563)
+.+++...++.|++||..... .+..+.... ....-.++-.....+++
T Consensus 103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~--------------------------------~~g~~~~~~~~P~~ia~ 150 (329)
T 3fvz_A 103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSM--------------------------------QPGSDQNHFCQPTDVAV 150 (329)
T ss_dssp CEEEEETTTTEEEEECTTCSSCCSEEESBTT--------------------------------BCCCSTTCCSSEEEEEE
T ss_pred CEEEEECCCCEEEEEeCCCCeEEEEEecccC--------------------------------CCCCCccccCCCcEEEE
Confidence 988888888999999975432 222111000 00000123446789999
Q ss_pred CC-CCCEEEEEe-CCCcEEEEeCCCCceeeeeccc----------CCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEE
Q 008496 407 DP-TGSLLASCS-DDVTAKIWNMKQDKYVHDLREH----------SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVK 474 (563)
Q Consensus 407 ~~-~~~~las~s-~dg~i~iwd~~~~~~~~~~~~~----------~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~ 474 (563)
+| ++.++++.+ .++.|++|+ ..+..+..+... -.....++++|++. .++++...++.|+
T Consensus 151 ~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g--------~l~v~d~~~~~I~ 221 (329)
T 3fvz_A 151 EPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLD--------QLCVADRENGRIQ 221 (329)
T ss_dssp CTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTT--------EEEEEETTTTEEE
T ss_pred eCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCC--------EEEEEECCCCEEE
Confidence 99 889888887 699999999 455555555322 23378899988732 3677888899999
Q ss_pred EEeCCCCeEEEEec--CCCCCEEEEEEcC------CCCEEEEEeCCCcEEEEecCCCeeEEEEec----CCCEEEEEEcC
Q 008496 475 LWDVELGKLLYSLN--GHREPVYSLAFSP------TGEYLASGSLDKSMHIWSLKEGKIVKTYTG----NGGIFEVCWNK 542 (563)
Q Consensus 475 iwd~~~~~~~~~~~--~h~~~i~~l~~sp------dg~~lasgs~dg~v~iw~~~~~~~~~~~~~----~~~i~~l~w~~ 542 (563)
+||..+++.+..+. .+...+.+++|+| +|+.+++.+.+.+|++|+..+++++..+.. ...+.+++++|
T Consensus 222 ~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~ 301 (329)
T 3fvz_A 222 CFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASE 301 (329)
T ss_dssp EEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECT
T ss_pred EEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECC
Confidence 99999899888873 4566789999999 333333333455899999999999988842 23588999999
Q ss_pred CCCEEEEEECCCeEEEEEee
Q 008496 543 EGDKIAACFANHTVCVLDFR 562 (563)
Q Consensus 543 ~g~~la~~~~~~~v~v~~~~ 562 (563)
+|+.+++...+++|.+|++.
T Consensus 302 dG~lyvad~~~~~I~~~~~~ 321 (329)
T 3fvz_A 302 DGTVYIGDAHTNTVWKFTLT 321 (329)
T ss_dssp TSEEEEEESSSCCEEEEEEE
T ss_pred CCCEEEEECCCCEEEEEeCC
Confidence 99888888889999999874
No 171
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.79 E-value=9.3e-17 Score=160.50 Aligned_cols=240 Identities=11% Similarity=0.094 Sum_probs=163.8
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEEcC--CceeEeecc-CCCCEEEEEeCCCCCE--EEEee-------------CC
Q 008496 275 KDVTTLDWNGEGTLLATGSYDGQARIWSTN--GDLKCTLSK-HKGPIFSLKWNKKGDY--LLTGS-------------CD 336 (563)
Q Consensus 275 ~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~--~~~~~~~~~-h~~~V~~l~~~~~~~~--l~s~s-------------~D 336 (563)
..+..++|+|+|++|++++.+ .|.+|+.. +.+...... ..+.+..++|+|+|++ +++++ .+
T Consensus 40 ~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~ 118 (365)
T 1jof_A 40 EPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFA 118 (365)
T ss_dssp CCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSC
T ss_pred CCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCC
Confidence 357789999999999999988 99999974 544332221 0123456899999995 45553 68
Q ss_pred CcEEEEECC-CCceeEEeee----cccCeEEEecCCCce-EEEE-eCCCeEEEEEcC-CCcc--eeeec--CCCcceeEE
Q 008496 337 KTAIVWDVK-TEEWKQQFEF----HSGPTLDVDWRNNVS-FATS-STDNMIYVCKIG-ENRP--IKTFA--GHQGEVNCV 404 (563)
Q Consensus 337 ~~v~iwd~~-~~~~~~~~~~----~~~~~~~~~~~~~~~-~~~~-~~d~~i~~~~~~-~~~~--~~~~~--~h~~~i~~~ 404 (563)
+++.+|++. .++....+.. +...+..+.|.++.. ++++ ..++.|++|++. .++. +..+. .|...+..+
T Consensus 119 g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~ 198 (365)
T 1jof_A 119 GYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWV 198 (365)
T ss_dssp CEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEE
T ss_pred ceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEe
Confidence 999999997 4655444332 344577788876653 4433 356899999997 4443 23333 245668899
Q ss_pred EECCCCCEEEEEeC-CCcEEEEeCC--CCcee------eeec----ccCC------CEEEEE-EccCCCCCCCCCCcEEE
Q 008496 405 KWDPTGSLLASCSD-DVTAKIWNMK--QDKYV------HDLR----EHSK------EIYTIR-WSPTGSGTNNPNQQLIL 464 (563)
Q Consensus 405 ~~~~~~~~las~s~-dg~i~iwd~~--~~~~~------~~~~----~~~~------~i~~~~-~~p~~~~~~~~~~~~~l 464 (563)
+|+|+|++|++++. ++.|.+|++. +++.. ..+. +|.. .+..++ |+|+|. +|
T Consensus 199 ~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~---------~l 269 (365)
T 1jof_A 199 AMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGK---------YM 269 (365)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSS---------EE
T ss_pred EECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCC---------EE
Confidence 99999999887765 7899999765 45432 1121 1222 478899 999985 33
Q ss_pred EEEeC-CC-----eEEEEeCC-CCeEEE---EecCCCCCEEEEEEcC---CCCEEEEEeCC-CcEEEEecCCCe
Q 008496 465 ASASF-DS-----TVKLWDVE-LGKLLY---SLNGHREPVYSLAFSP---TGEYLASGSLD-KSMHIWSLKEGK 524 (563)
Q Consensus 465 ~s~s~-dg-----~i~iwd~~-~~~~~~---~~~~h~~~i~~l~~sp---dg~~lasgs~d-g~v~iw~~~~~~ 524 (563)
++++. ++ +|++|++. +++... ....+...+..++|+| ||++|++++.+ +.|.||++....
T Consensus 270 ~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~~ 343 (365)
T 1jof_A 270 FASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF 343 (365)
T ss_dssp EEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred EEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchhh
Confidence 34332 23 89999986 566543 2333444567889999 89999998865 899999987663
No 172
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.78 E-value=1.9e-16 Score=155.84 Aligned_cols=248 Identities=12% Similarity=0.181 Sum_probs=182.2
Q ss_pred CceEEEEECCCCCEEEEeeCC------------------------CcEEEEecCCCCCcCCCCCCCceEEEEEeeecccc
Q 008496 216 SEVCACAWSPAGSLLASGSGD------------------------STARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTN 271 (563)
Q Consensus 216 ~~V~~~~~sp~~~~latgs~D------------------------~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (563)
+.|.+++++|+|+++++.+.+ +.|.+||..++... ... + .
T Consensus 24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~-------------~~~-~--~ 87 (329)
T 3fvz_A 24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEIL-------------QSS-G--K 87 (329)
T ss_dssp SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEE-------------EEE-C--T
T ss_pred CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEE-------------ecc-C--C
Confidence 568999999999999998887 46888887654321 111 0 1
Q ss_pred cCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCc--eeEee---------ccCCCCEEEEEeCC-CCCEEEEee-CCCc
Q 008496 272 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD--LKCTL---------SKHKGPIFSLKWNK-KGDYLLTGS-CDKT 338 (563)
Q Consensus 272 ~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~--~~~~~---------~~h~~~V~~l~~~~-~~~~l~s~s-~D~~ 338 (563)
........++++++|+++++...++.|++|+.++. ....+ ..+-....+++++| ++..+++.+ .++.
T Consensus 88 ~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~ 167 (329)
T 3fvz_A 88 NLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSR 167 (329)
T ss_dssp TTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCE
T ss_pred CccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCe
Confidence 22346889999999999999999999999999886 44444 34455689999999 788778876 6899
Q ss_pred EEEEECCCCceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCC-CCEEEEEe
Q 008496 339 AIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT-GSLLASCS 417 (563)
Q Consensus 339 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~-~~~las~s 417 (563)
|++|| ..+.....+..... .+ . ...++-.....++++|+ +.++++..
T Consensus 168 I~~~~-~~g~~~~~~~~~g~-----------------~~---------~-----~~~~~~~~p~gia~d~~~g~l~v~d~ 215 (329)
T 3fvz_A 168 IVQFS-PSGKFVTQWGEESS-----------------GS---------S-----PRPGQFSVPHSLALVPHLDQLCVADR 215 (329)
T ss_dssp EEEEC-TTSCEEEEECEECC-----------------SS---------S-----CCTTEESCEEEEEEETTTTEEEEEET
T ss_pred EEEEc-CCCCEEEEeccCCC-----------------CC---------C-----CCCcccCCCcEEEEECCCCEEEEEEC
Confidence 99999 44544433321100 00 0 00112234678999998 78888888
Q ss_pred CCCcEEEEeCCCCceeeeec--ccCCCEEEEEEccCCCCCCCCCCcEEEEE-------EeCCCeEEEEeCCCCeEEEEec
Q 008496 418 DDVTAKIWNMKQDKYVHDLR--EHSKEIYTIRWSPTGSGTNNPNQQLILAS-------ASFDSTVKLWDVELGKLLYSLN 488 (563)
Q Consensus 418 ~dg~i~iwd~~~~~~~~~~~--~~~~~i~~~~~~p~~~~~~~~~~~~~l~s-------~s~dg~i~iwd~~~~~~~~~~~ 488 (563)
.++.|++|+..+++.+..+. .+...++.++|+| +. ++++ .+.+..|++||..+++.+..+.
T Consensus 216 ~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~---------~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~ 285 (329)
T 3fvz_A 216 ENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GF---------LFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFK 285 (329)
T ss_dssp TTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TE---------EEEEECCCCTTCSCCCCEEEEETTTCCEEEEEC
T ss_pred CCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CE---------EEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEc
Confidence 89999999999888877763 4566788999998 31 2222 2334589999999999988873
Q ss_pred ---CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 008496 489 ---GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLK 521 (563)
Q Consensus 489 ---~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~ 521 (563)
++...+..|+++|+|.++++...+++|++|++.
T Consensus 286 ~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~ 321 (329)
T 3fvz_A 286 PVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLT 321 (329)
T ss_dssp CSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEE
T ss_pred CCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCC
Confidence 566778999999999888888899999999975
No 173
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.78 E-value=8.2e-16 Score=147.90 Aligned_cols=247 Identities=13% Similarity=0.219 Sum_probs=176.6
Q ss_pred CCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEE-CCCCCEEEE
Q 008496 213 GHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDW-NGEGTLLAT 291 (563)
Q Consensus 213 ~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~-s~~g~~l~s 291 (563)
+|...+.+++++|++.++++.+.++.|++|+... ... ..+. ..+....+...+..+++ .++|.++++
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g-~~~----------~~~~-~~~~~~~~~~~p~~i~~~~~~g~l~v~ 94 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEG-RFK----------FQFG-ECGKRDSQLLYPNRVAVVRNSGDIIVT 94 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTS-CEE----------EEEC-CBSSSTTCBSSEEEEEEETTTTEEEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCCC-cEE----------EEec-ccCCCcccccCceEEEEEcCCCeEEEE
Confidence 4556788999999999999988999999999652 210 0000 00111122346889999 578877777
Q ss_pred EeC-CCeEEEEEcCCceeEeec-cCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCCc
Q 008496 292 GSY-DGQARIWSTNGDLKCTLS-KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV 369 (563)
Q Consensus 292 g~~-dg~i~vw~~~~~~~~~~~-~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (563)
... ++.|++|+.++.....+. .+...+.+++++|+|+.+++...++.|.+||.. +.....+.
T Consensus 95 ~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~--------------- 158 (286)
T 1q7f_A 95 ERSPTHQIQIYNQYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFG--------------- 158 (286)
T ss_dssp ECGGGCEEEEECTTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEE---------------
T ss_pred cCCCCCEEEEECCCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeC---------------
Confidence 644 899999998887766553 344578999999999988887788999999864 32221110
Q ss_pred eEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeccc--CCCEEEEE
Q 008496 370 SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREH--SKEIYTIR 447 (563)
Q Consensus 370 ~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~--~~~i~~~~ 447 (563)
..++...+.+++++++|+++++.+.++.|++||.. +..+..+..+ ...+..++
T Consensus 159 ------------------------~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~ 213 (286)
T 1q7f_A 159 ------------------------CSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVG 213 (286)
T ss_dssp ------------------------CTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEE
T ss_pred ------------------------CCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEE
Confidence 01233457889999999988888889999999974 4455555433 35688999
Q ss_pred EccCCCCCCCCCCcEEEEEEeCCC-eEEEEeCCCCeEEEEecCCC--CCEEEEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 008496 448 WSPTGSGTNNPNQQLILASASFDS-TVKLWDVELGKLLYSLNGHR--EPVYSLAFSPTGEYLASGSLDKSMHIWSLKEG 523 (563)
Q Consensus 448 ~~p~~~~~~~~~~~~~l~s~s~dg-~i~iwd~~~~~~~~~~~~h~--~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~ 523 (563)
++|++. ++++...++ .|++||. .++.+..+..+. ..+.+++|+|+|+++++ +.|++|++|++...
T Consensus 214 ~d~~G~---------l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 214 INSNGE---------ILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp ECTTCC---------EEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred ECCCCC---------EEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 998874 566676675 9999996 466666665443 24789999999987777 67999999998653
No 174
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.76 E-value=4.7e-17 Score=164.16 Aligned_cols=276 Identities=10% Similarity=-0.016 Sum_probs=174.4
Q ss_pred eEEEEECCCCCEEEEeeCC---CcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeC
Q 008496 218 VCACAWSPAGSLLASGSGD---STARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY 294 (563)
Q Consensus 218 V~~~~~sp~~~~latgs~D---~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~ 294 (563)
+..++|||+|++||..+.+ ..+.+|++.++... .... ........+.|+|||++|+.++.
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~--------------~l~~---~~~~~~~~~~~spdg~~l~~~~~ 100 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAV--------------QLTE---GKGDNTFGGFISTDERAFFYVKN 100 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEE--------------ECCC---SSCBCTTTCEECTTSSEEEEEET
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEE--------------Eeec---CCCCccccceECCCCCEEEEEEc
Confidence 6778999999988877543 36777887654311 1100 01111223689999999999999
Q ss_pred CCeEEEEEcCCcee-EeeccCCCCEEE-------------------EEeCCCCCEEEEe-----eCCCcEEEEECCCCce
Q 008496 295 DGQARIWSTNGDLK-CTLSKHKGPIFS-------------------LKWNKKGDYLLTG-----SCDKTAIVWDVKTEEW 349 (563)
Q Consensus 295 dg~i~vw~~~~~~~-~~~~~h~~~V~~-------------------l~~~~~~~~l~s~-----s~D~~v~iwd~~~~~~ 349 (563)
++.|++|+..+... .....+...... +.|+|++++++.+ ..+..|.+||+.+++.
T Consensus 101 ~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~ 180 (396)
T 3c5m_A 101 ELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGEL 180 (396)
T ss_dssp TTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCE
T ss_pred CCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcE
Confidence 99999999875433 333333332222 3567777766544 3567899999998876
Q ss_pred eEEeeecccCeEEEecCC--CceEEEEeCC------CeEEEEEcCCCcceeeecCC-CcceeEEEECCCCCEEEEEeCC-
Q 008496 350 KQQFEFHSGPTLDVDWRN--NVSFATSSTD------NMIYVCKIGENRPIKTFAGH-QGEVNCVKWDPTGSLLASCSDD- 419 (563)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~d------~~i~~~~~~~~~~~~~~~~h-~~~i~~~~~~~~~~~las~s~d- 419 (563)
.... .+...+..+.|.+ ...++..+.+ ..|+++++............ ...+..++|+|+|+.|+.++.+
T Consensus 181 ~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~ 259 (396)
T 3c5m_A 181 EVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFK 259 (396)
T ss_dssp EEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEET
T ss_pred Eeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCC
Confidence 5544 3445566777866 3335444332 46888888655433333321 2357889999999987777554
Q ss_pred ----CcEEEEeCCCCceeeeecccCCCEEEEEEcc-CCCCCCCCCCcEEEEEEe----------------CCCeEEEEeC
Q 008496 420 ----VTAKIWNMKQDKYVHDLREHSKEIYTIRWSP-TGSGTNNPNQQLILASAS----------------FDSTVKLWDV 478 (563)
Q Consensus 420 ----g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p-~~~~~~~~~~~~~l~s~s----------------~dg~i~iwd~ 478 (563)
+.|.+||+.+++.... .... ... +.|+| ++. ++++++ .++.|++||+
T Consensus 260 ~~~~~~l~~~d~~~g~~~~l-~~~~-~~~-~~~s~~dg~---------~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~ 327 (396)
T 3c5m_A 260 GQTDRVIYKANPETLENEEV-MVMP-PCS-HLMSNFDGS---------LMVGDGCDAPVDVADADSYNIENDPFLYVLNT 327 (396)
T ss_dssp TTCCEEEEEECTTTCCEEEE-EECC-SEE-EEEECSSSS---------EEEEEECCC----------CCCCCCEEEEEET
T ss_pred CCccceEEEEECCCCCeEEe-eeCC-CCC-CCccCCCCc---------eEEEecCCcceeeccccccccCCCCcEEEEec
Confidence 4599999988764332 2111 123 88998 775 444443 3478999999
Q ss_pred CCCeEEEEecCCCC-----------CEEEEEEcCCCCEEEEEeC-CCcEEEE--ecCCCe
Q 008496 479 ELGKLLYSLNGHRE-----------PVYSLAFSPTGEYLASGSL-DKSMHIW--SLKEGK 524 (563)
Q Consensus 479 ~~~~~~~~~~~h~~-----------~i~~l~~spdg~~lasgs~-dg~v~iw--~~~~~~ 524 (563)
.+++.. .+..+.. .+..++|+|||++|+.++. ++...|| ++.++.
T Consensus 328 ~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~ 386 (396)
T 3c5m_A 328 KAKSAQ-KLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPESY 386 (396)
T ss_dssp TTTBCC-EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTTC
T ss_pred ccCceE-EccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEcccc
Confidence 877643 3443433 2567899999999887765 4544444 444443
No 175
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.76 E-value=5.3e-16 Score=152.73 Aligned_cols=267 Identities=11% Similarity=0.103 Sum_probs=191.1
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEee
Q 008496 275 KDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFE 354 (563)
Q Consensus 275 ~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~ 354 (563)
..|.+++|++++..++..+.++.++.| .+.....+..+...+.+++|+++|+.++++..++.|.+||+.+++......
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~ 83 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTI--TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFV 83 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEE--ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEE
T ss_pred cccceeeecCCccceeEEeecccCccc--ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEee
Confidence 447778889988877777888899999 344555666777778999999999977888889999999998887665443
Q ss_pred ecccCeEEEecCCCce-EEEEeCC----CeEEEEEcCCCcceeeec--CCCcceeEEEECCCCCEEEEEeC------CCc
Q 008496 355 FHSGPTLDVDWRNNVS-FATSSTD----NMIYVCKIGENRPIKTFA--GHQGEVNCVKWDPTGSLLASCSD------DVT 421 (563)
Q Consensus 355 ~~~~~~~~~~~~~~~~-~~~~~~d----~~i~~~~~~~~~~~~~~~--~h~~~i~~~~~~~~~~~las~s~------dg~ 421 (563)
.+...+..+.+..+.. +++...+ +.|++|+.........+. .+...+++++++|+|+++++... .+.
T Consensus 84 ~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~ 163 (333)
T 2dg1_A 84 SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGG 163 (333)
T ss_dssp CSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEE
T ss_pred CCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCce
Confidence 4455677888865544 4544444 589999887665432332 23456899999999998887664 355
Q ss_pred EEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC-CeEEE--------EecCCCC
Q 008496 422 AKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL-GKLLY--------SLNGHRE 492 (563)
Q Consensus 422 i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~-~~~~~--------~~~~h~~ 492 (563)
|..|+..+++.. .+..+...+..++|+|++. .++++.+.++.|.+||+.. +..+. .+.++ .
T Consensus 164 l~~~~~~~~~~~-~~~~~~~~~~~i~~~~dg~--------~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~ 233 (333)
T 2dg1_A 164 VYYVSPDFRTVT-PIIQNISVANGIALSTDEK--------VLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-E 233 (333)
T ss_dssp EEEECTTSCCEE-EEEEEESSEEEEEECTTSS--------EEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-S
T ss_pred EEEEeCCCCEEE-EeecCCCcccceEECCCCC--------EEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-C
Confidence 666665554433 2223334578899999874 2445566788999999863 33221 12222 3
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEecCC-------CEEEEEEcCCCCEEEEEECCC
Q 008496 493 PVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG-------GIFEVCWNKEGDKIAACFANH 554 (563)
Q Consensus 493 ~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~~-------~i~~l~w~~~g~~la~~~~~~ 554 (563)
.+..++++++|+++++...++.|.+|+. +++.+..+.... .+.+++|++||+.|.++..++
T Consensus 234 ~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 234 GPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp EEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred CCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence 5788999999998888888899999998 577777775432 478999999998888776653
No 176
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.76 E-value=5.9e-16 Score=153.26 Aligned_cols=256 Identities=11% Similarity=0.124 Sum_probs=176.9
Q ss_pred CCeEEEEECCCCCEEEEEe---------CCCeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCC---C--cEE
Q 008496 275 KDVTTLDWNGEGTLLATGS---------YDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCD---K--TAI 340 (563)
Q Consensus 275 ~~V~~l~~s~~g~~l~sg~---------~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D---~--~v~ 340 (563)
..+..+++ ||+.++... .++.|.+|+..+.....+ ..+..++|+|+|++|+.++.+ + .|.
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~ 88 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRFI----ENATMPRISPDGKKIAFMRANEEKKVSEIW 88 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE----ESCEEEEECTTSSEEEEEEEETTTTEEEEE
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEEc----ccCCCeEECCCCCEEEEEEeccCCCcceEE
Confidence 34667777 888887642 356889999876554444 567889999999999887754 3 378
Q ss_pred EEECCCCceeEEeeecccCeEEEecCCC-ceEEEEeC---------------------------CCeEEEEEcCCCccee
Q 008496 341 VWDVKTEEWKQQFEFHSGPTLDVDWRNN-VSFATSST---------------------------DNMIYVCKIGENRPIK 392 (563)
Q Consensus 341 iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---------------------------d~~i~~~~~~~~~~~~ 392 (563)
+||+.+++......... +..+.|.++ ..++.++. ...|++|++..+..+.
T Consensus 89 ~~~~~~g~~~~l~~~~~--~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~ 166 (347)
T 2gop_A 89 VADLETLSSKKILEAKN--IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIE 166 (347)
T ss_dssp EEETTTTEEEEEEEESE--EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEE
T ss_pred EEECCCCceEEEEcCCC--ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEe
Confidence 88988887665544433 778889754 44555542 2568899988776634
Q ss_pred eecCCCcceeEEEECCCCCEEEEEeCCC-------cEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEE
Q 008496 393 TFAGHQGEVNCVKWDPTGSLLASCSDDV-------TAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILA 465 (563)
Q Consensus 393 ~~~~h~~~i~~~~~~~~~~~las~s~dg-------~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~ 465 (563)
.+.. . .+..++|+|+| ++++++.+. ...||.+.++. ...+..+ ..+..+ +|+|. .|+
T Consensus 167 ~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~l~~~-~~~~~~--spdg~---------~l~ 230 (347)
T 2gop_A 167 EFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGK-EEKMFEK-VSFYAV--DSDGE---------RIL 230 (347)
T ss_dssp EEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTE-EEEEEEE-ESEEEE--EECSS---------CEE
T ss_pred eecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCc-eEEeccC-cceeeE--CCCCC---------EEE
Confidence 4544 3 78899999999 888776642 44555544443 3344444 455544 78875 344
Q ss_pred EEeCC--------CeEEEEeCCCCeEEEEecCCCCCEEE-EEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEecCCCEE
Q 008496 466 SASFD--------STVKLWDVELGKLLYSLNGHREPVYS-LAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIF 536 (563)
Q Consensus 466 s~s~d--------g~i~iwd~~~~~~~~~~~~h~~~i~~-l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~~~i~ 536 (563)
.++.+ ..|.+|| +++......+|...+.. +.|+ || ++++++.++.++|| +.+++......+.+.|.
T Consensus 231 ~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~~~~~~v~ 305 (347)
T 2gop_A 231 LYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPIAKGRHWIM 305 (347)
T ss_dssp EEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEEECSSSEEE
T ss_pred EEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEEecCCCeEE
Confidence 44433 4788888 56654444556777886 9999 99 99999999999999 88777766666667789
Q ss_pred EEEEcCCCCEEEEEECCCeE-EEEEe
Q 008496 537 EVCWNKEGDKIAACFANHTV-CVLDF 561 (563)
Q Consensus 537 ~l~w~~~g~~la~~~~~~~v-~v~~~ 561 (563)
+++|+| ..++++..++.. .||.+
T Consensus 306 ~~~~s~--~~~~~~~~~~~~~~l~~~ 329 (347)
T 2gop_A 306 GFDVDE--IVVYLKETATRLRELFTW 329 (347)
T ss_dssp EEEESS--SEEEEEECSSSCCEEEEE
T ss_pred eeeeeC--cEEEEEcCCCChHHheEe
Confidence 999999 566666666554 56654
No 177
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.75 E-value=1.2e-15 Score=150.98 Aligned_cols=258 Identities=14% Similarity=0.142 Sum_probs=173.7
Q ss_pred ceEEEEECCCCCEEEEee---------CCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCC
Q 008496 217 EVCACAWSPAGSLLASGS---------GDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 287 (563)
Q Consensus 217 ~V~~~~~sp~~~~latgs---------~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~ 287 (563)
.+...+| +|+.+|... .++.|.+|++.++.. ..+ ..+..++|||||+
T Consensus 16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~-----------~~l-----------~~~~~~~~SpDg~ 71 (347)
T 2gop_A 16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNAR-----------RFI-----------ENATMPRISPDGK 71 (347)
T ss_dssp EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCE-----------EEE-----------ESCEEEEECTTSS
T ss_pred EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCce-----------EEc-----------ccCCCeEECCCCC
Confidence 3566777 888777642 366788898865431 111 2478899999999
Q ss_pred EEEEEeCC---C--eEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCC--------------------------
Q 008496 288 LLATGSYD---G--QARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCD-------------------------- 336 (563)
Q Consensus 288 ~l~sg~~d---g--~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D-------------------------- 336 (563)
+|+.++.+ + .|.+|+..+.....+..+.. +..+.|+|+|+.|+.++.+
T Consensus 72 ~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 150 (347)
T 2gop_A 72 KIAFMRANEEKKVSEIWVADLETLSSKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGE 150 (347)
T ss_dssp EEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------C
T ss_pred EEEEEEeccCCCcceEEEEECCCCceEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCc
Confidence 99988754 3 47777877654444444444 9999999999999887643
Q ss_pred -CcEEEEECCCCceeEEeeecccCeEEEecCCCceEEEEeCC---------CeEEEEEcCCCcceeeecCCCcceeEEEE
Q 008496 337 -KTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTD---------NMIYVCKIGENRPIKTFAGHQGEVNCVKW 406 (563)
Q Consensus 337 -~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d---------~~i~~~~~~~~~~~~~~~~h~~~i~~~~~ 406 (563)
..|.+||+.+++....+.. . .+..+.|.++..++++..+ ..|++++ .+. ...+..+ ..+..+
T Consensus 151 ~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg~~~~~~~~~~~~~~~~~~~l~~~d--~~~-~~~l~~~-~~~~~~-- 222 (347)
T 2gop_A 151 KTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDKIVVNVPHREIIPQYFKFWDIYIWE--DGK-EEKMFEK-VSFYAV-- 222 (347)
T ss_dssp EEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTEEEEEEECCCSSCCSSCCEEEEEEE--TTE-EEEEEEE-ESEEEE--
T ss_pred cceEEEEECCCCeEEeeecC-C-CcccccCCCCeEEEEEecccccccccccccEEEeC--CCc-eEEeccC-cceeeE--
Confidence 5689999998876444444 3 6667788776633334332 2455555 333 3344444 445444
Q ss_pred CCCCCEEEEEeCCC--------cEEEEeCCCCceeeeecccCCCEEE-EEEccCCCCCCCCCCcEEEEEEeCCCeEEEEe
Q 008496 407 DPTGSLLASCSDDV--------TAKIWNMKQDKYVHDLREHSKEIYT-IRWSPTGSGTNNPNQQLILASASFDSTVKLWD 477 (563)
Q Consensus 407 ~~~~~~las~s~dg--------~i~iwd~~~~~~~~~~~~~~~~i~~-~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd 477 (563)
+|+|+.|+.++.++ .|.+|| +++.......+...+.. +.|+ ++ ++++++.++.++||
T Consensus 223 spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg----------~~~~~~~~~~~~l~- 288 (347)
T 2gop_A 223 DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK----------VYFTLFEEGSVNLY- 288 (347)
T ss_dssp EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE----------EEEEEEETTEEEEE-
T ss_pred CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc----------EEEEEecCCcEEEE-
Confidence 99999988877543 677777 55544444455677776 8887 53 57888899999999
Q ss_pred CCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcE-EEEecCCCee
Q 008496 478 VELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSM-HIWSLKEGKI 525 (563)
Q Consensus 478 ~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v-~iw~~~~~~~ 525 (563)
+.+++.. .+..+...|.+++|+| .++++++.++.. .||.+. ++.
T Consensus 289 ~~~g~~~-~~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~-g~~ 333 (347)
T 2gop_A 289 IWDGEIK-PIAKGRHWIMGFDVDE--IVVYLKETATRLRELFTWD-GEE 333 (347)
T ss_dssp EESSSEE-EEECSSSEEEEEEESS--SEEEEEECSSSCCEEEEES-SSE
T ss_pred EcCCceE-EEecCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC-CcE
Confidence 8766654 3444577899999999 677777777654 777765 553
No 178
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.74 E-value=1.3e-16 Score=174.74 Aligned_cols=317 Identities=10% Similarity=0.108 Sum_probs=191.3
Q ss_pred eEecCCCCc-----eEEEEECCCCCEEEEeeCC---------CcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCC
Q 008496 209 TILEGHTSE-----VCACAWSPAGSLLASGSGD---------STARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKS 274 (563)
Q Consensus 209 ~~l~~h~~~-----V~~~~~sp~~~~latgs~D---------~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (563)
.++.+|... ....+|||||++|+.++.+ +.+.+||+.++.... ...+.
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~------------------l~~~~ 111 (740)
T 4a5s_A 50 VFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLIT------------------EERIP 111 (740)
T ss_dssp EEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC------------------SSCCC
T ss_pred EEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEE------------------cccCC
Confidence 445666532 2347899999999998876 556799998764211 11123
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEEcCCceeEee--ccCCCCE-----------------EEEEeCCCCCEEEEeeC
Q 008496 275 KDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTL--SKHKGPI-----------------FSLKWNKKGDYLLTGSC 335 (563)
Q Consensus 275 ~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~--~~h~~~V-----------------~~l~~~~~~~~l~s~s~ 335 (563)
..+...+|||||+.||.+. ++.|++|+..+.....+ .++...+ .++.|||||++|+.++.
T Consensus 112 ~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~ 190 (740)
T 4a5s_A 112 NNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQF 190 (740)
T ss_dssp TTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEE
T ss_pred CcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEE
Confidence 5689999999999999884 68999999865433332 3333333 24899999999999887
Q ss_pred CCc-EEEEECCCCceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCC---Cc--ceeeec------CCCcceeE
Q 008496 336 DKT-AIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGE---NR--PIKTFA------GHQGEVNC 403 (563)
Q Consensus 336 D~~-v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~---~~--~~~~~~------~h~~~i~~ 403 (563)
|.+ +.+|++....... .+......+.+..... ......|++|++.+ +. ....+. +|...+..
T Consensus 191 d~~~v~~~~~~~~~~~~---~~~~~~~~~~yp~~G~---~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 264 (740)
T 4a5s_A 191 NDTEVPLIEYSFYSDES---LQYPKTVRVPYPKAGA---VNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCD 264 (740)
T ss_dssp ECTTCCEEEEEECCSTT---CSSCEEEEEECCBTTS---CCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEE
T ss_pred cccCCceEEEEeecCCC---CCCCcceeecCCCCcC---cCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEE
Confidence 665 8888753111000 0011112222211100 01122688999987 62 222333 47888999
Q ss_pred EEECCCCCEEEEEeC----CCcEEEEeCCCCc----ee--eee--cccCCCEE-----EEEEccCCCCCCCCCCcEEEEE
Q 008496 404 VKWDPTGSLLASCSD----DVTAKIWNMKQDK----YV--HDL--REHSKEIY-----TIRWSPTGSGTNNPNQQLILAS 466 (563)
Q Consensus 404 ~~~~~~~~~las~s~----dg~i~iwd~~~~~----~~--~~~--~~~~~~i~-----~~~~~p~~~~~~~~~~~~~l~s 466 (563)
++|+|||++++.... +..|++||+.+++ +. ..+ ..|...+. ...|+|+|. .++..
T Consensus 265 ~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~--------~l~~~ 336 (740)
T 4a5s_A 265 VTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGN--------SFYKI 336 (740)
T ss_dssp EEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSS--------EEEEE
T ss_pred EEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCC--------EEEEE
Confidence 999999997665533 3479999998876 22 222 23444433 678999885 23324
Q ss_pred Ee-CCC--eEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEE-EEeC----CCcEEEEec--CCCeeEEEEec-----
Q 008496 467 AS-FDS--TVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLA-SGSL----DKSMHIWSL--KEGKIVKTYTG----- 531 (563)
Q Consensus 467 ~s-~dg--~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~la-sgs~----dg~v~iw~~--~~~~~~~~~~~----- 531 (563)
.+ .+| .|++||+..++.. .+......|..+.+ +|++.|+ +++. .+..+||.+ ..+.....+..
T Consensus 337 ~s~~~G~~~l~~~~~~~~~~~-~lT~g~~~v~~~~~-~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~ 414 (740)
T 4a5s_A 337 ISNEEGYRHICYFQIDKKDCT-FITKGTWEVIGIEA-LTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPE 414 (740)
T ss_dssp EECTTSCEEEEEEETTCSSCE-ESCCSSSCEEEEEE-ECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTT
T ss_pred EEcCCCceEEEEEECCCCceE-ecccCCEEEEEEEE-EeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCC
Confidence 44 444 6888898866554 44444555666542 4465554 4444 234555554 43333223331
Q ss_pred CCCEEEEEEcCCCCEEEEEECCC---eEEEEE
Q 008496 532 NGGIFEVCWNKEGDKIAACFANH---TVCVLD 560 (563)
Q Consensus 532 ~~~i~~l~w~~~g~~la~~~~~~---~v~v~~ 560 (563)
......++|+|+|++++..+.+. .+.+++
T Consensus 415 ~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~ 446 (740)
T 4a5s_A 415 RCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHS 446 (740)
T ss_dssp TBCBEEEEECTTSSEEEEEECSBSSCEEEEEE
T ss_pred CCceEEEEECCCCCEEEEEeCCCCCCEEEEEE
Confidence 24678999999999888776552 344544
No 179
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.73 E-value=2.1e-15 Score=145.85 Aligned_cols=233 Identities=13% Similarity=0.116 Sum_probs=169.5
Q ss_pred CCeEEEEECCCCC-EEEEEeCCCeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEe
Q 008496 275 KDVTTLDWNGEGT-LLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF 353 (563)
Q Consensus 275 ~~V~~l~~s~~g~-~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~ 353 (563)
....+++|+|+|+ +++++..++.|..|+..+. ...+..+...+.+++++|+|+.+++...++.|.+||..+++.....
T Consensus 28 ~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~ 106 (296)
T 3e5z_A 28 TWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIA 106 (296)
T ss_dssp SSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEE
T ss_pred ccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEe
Confidence 3467899999998 7888889999999999887 6667777888999999999998887777889999998777643211
Q ss_pred eecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeC---------------
Q 008496 354 EFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD--------------- 418 (563)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~--------------- 418 (563)
.... . .....++.++++|+|+++++.+.
T Consensus 107 ~~~~------------------------------~-------~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~ 149 (296)
T 3e5z_A 107 DSFE------------------------------G-------KKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEME 149 (296)
T ss_dssp CEET------------------------------T-------EECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCC
T ss_pred eccC------------------------------C-------CCCCCCCCEEECCCCCEEEECCcccccccccccccccc
Confidence 1000 0 01124567899999998887331
Q ss_pred --CCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCC-CCeE---EEEecCCCC
Q 008496 419 --DVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE-LGKL---LYSLNGHRE 492 (563)
Q Consensus 419 --dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~-~~~~---~~~~~~h~~ 492 (563)
.+.|..++.. + .+..+..+......++|+|++. +|++.+.++.|++|++. .++. ...+..+..
T Consensus 150 ~~~~~l~~~~~~-g-~~~~~~~~~~~~~gi~~s~dg~---------~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~ 218 (296)
T 3e5z_A 150 LPGRWVFRLAPD-G-TLSAPIRDRVKPNGLAFLPSGN---------LLVSDTGDNATHRYCLNARGETEYQGVHFTVEPG 218 (296)
T ss_dssp SSSCEEEEECTT-S-CEEEEECCCSSEEEEEECTTSC---------EEEEETTTTEEEEEEECSSSCEEEEEEEECCSSS
T ss_pred CCCcEEEEECCC-C-CEEEeecCCCCCccEEECCCCC---------EEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCC
Confidence 2344444444 3 3334445566678999999875 44778888999999986 5554 233333445
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEecCCCEEEEEE-cCCCCEEEEEECCCeEEEEE
Q 008496 493 PVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCW-NKEGDKIAACFANHTVCVLD 560 (563)
Q Consensus 493 ~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~~~i~~l~w-~~~g~~la~~~~~~~v~v~~ 560 (563)
.+..++++++|+++++. ++.|.+|+.. ++.+..+.....+.+++| +++|+.|.++..++ +.-++
T Consensus 219 ~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~~~~~~~f~~~d~~~L~v~t~~~-l~~~~ 283 (296)
T 3e5z_A 219 KTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVLTPQTTSNLCFGGPEGRTLYMTVSTE-FWSIE 283 (296)
T ss_dssp CCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEECSSCCCEEEEESTTSCEEEEEETTE-EEEEE
T ss_pred CCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEECCCCceeEEEECCCCCEEEEEcCCe-EEEEE
Confidence 56789999999977766 7889999986 777777776555889999 68999999987763 44444
No 180
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.73 E-value=2.9e-14 Score=149.34 Aligned_cols=309 Identities=13% Similarity=0.090 Sum_probs=209.0
Q ss_pred CCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEc-
Q 008496 225 PAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWST- 303 (563)
Q Consensus 225 p~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~- 303 (563)
|.+.++++...+++|.++|..+++.. ..+. ....+..+.++|||+++++++.|+.|.+||+
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~-------------~~i~-----~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~ 226 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIK-------------TVLD-----TGYAVHISRLSASGRYLFVIGRDGKVNMIDLW 226 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEE-------------EEEE-----CSSCEEEEEECTTSCEEEEEETTSEEEEEETT
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEE-------------EEEe-----CCCCccceEECCCCCEEEEEcCCCeEEEEECC
Confidence 44557777888999999998765421 1111 1234678999999999999999999999998
Q ss_pred --CCceeEeeccCCCCEEEEEeC----CCCCEEEEeeC-CCcEEEEECCCCceeEEeeecc----------c-CeEEEec
Q 008496 304 --NGDLKCTLSKHKGPIFSLKWN----KKGDYLLTGSC-DKTAIVWDVKTEEWKQQFEFHS----------G-PTLDVDW 365 (563)
Q Consensus 304 --~~~~~~~~~~h~~~V~~l~~~----~~~~~l~s~s~-D~~v~iwd~~~~~~~~~~~~~~----------~-~~~~~~~ 365 (563)
.+.....+..... ...++|+ |+|+++++++. +++|.++|..+.+.+..+.... . .+..+..
T Consensus 227 ~~t~~~v~~i~~G~~-P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~ 305 (567)
T 1qks_A 227 MKEPTTVAEIKIGSE-ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILA 305 (567)
T ss_dssp SSSCCEEEEEECCSE-EEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEE
T ss_pred CCCCcEeEEEecCCC-CceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEE
Confidence 4455555554333 4789999 69999877654 5899999999988887665321 1 1222222
Q ss_pred C--CCceEEEEeCCCeEEEEEcCCCcce--eeecCCCcceeEEEECCCCCEEEEEe-CCCcEEEEeCCCCceeeeecc--
Q 008496 366 R--NNVSFATSSTDNMIYVCKIGENRPI--KTFAGHQGEVNCVKWDPTGSLLASCS-DDVTAKIWNMKQDKYVHDLRE-- 438 (563)
Q Consensus 366 ~--~~~~~~~~~~d~~i~~~~~~~~~~~--~~~~~h~~~i~~~~~~~~~~~las~s-~dg~i~iwd~~~~~~~~~~~~-- 438 (563)
. ....++.....|.|.+.+....... ..+ ........+.|+|+|++|+++. .++.|.++|+.+++.+..+..
T Consensus 306 s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i-~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg 384 (567)
T 1qks_A 306 SHYRPEFIVNVKETGKILLVDYTDLNNLKTTEI-SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGG 384 (567)
T ss_dssp CSSSSEEEEEETTTTEEEEEETTCSSEEEEEEE-ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSS
T ss_pred cCCCCEEEEEecCCCeEEEEecCCCccceeeee-eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccC
Confidence 1 2233445566788888887654321 222 1233466789999999876655 578999999999987655433
Q ss_pred ---cCCCEEEEEEccCCCCCCCCCCcEEEEEEe-CCCeEEEEeCCC-------CeEEEEecCCCCCEEEEEEcCCCCEEE
Q 008496 439 ---HSKEIYTIRWSPTGSGTNNPNQQLILASAS-FDSTVKLWDVEL-------GKLLYSLNGHREPVYSLAFSPTGEYLA 507 (563)
Q Consensus 439 ---~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s-~dg~i~iwd~~~-------~~~~~~~~~h~~~i~~l~~spdg~~la 507 (563)
|.+.-..+ +.|++. .+.+++. .+++|.++|... .+.+.++......-.-|.++|++++|.
T Consensus 385 ~~Phpg~g~~~-~~p~~g--------~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~ 455 (567)
T 1qks_A 385 QTPHPGRGANF-VHPTFG--------PVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLY 455 (567)
T ss_dssp SSBCCTTCEEE-EETTTE--------EEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEE
T ss_pred cCCCCccceee-ECCCCC--------cEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEE
Confidence 32211111 345432 2455554 568999999987 567777765433334578999999988
Q ss_pred EEeC-------CCcEEEEecCCC-----e-eEEEEe---------cCCCEEEEEEcCCCCEEEEEEC-----CCeEEEEE
Q 008496 508 SGSL-------DKSMHIWSLKEG-----K-IVKTYT---------GNGGIFEVCWNKEGDKIAACFA-----NHTVCVLD 560 (563)
Q Consensus 508 sgs~-------dg~v~iw~~~~~-----~-~~~~~~---------~~~~i~~l~w~~~g~~la~~~~-----~~~v~v~~ 560 (563)
+... .++|.|+|+.+. . ...... +...+..+.|+|+|+.|.++.. ++.|.|+|
T Consensus 456 v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D 535 (567)
T 1qks_A 456 VDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVD 535 (567)
T ss_dssp EECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEE
T ss_pred EecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEE
Confidence 7653 358999999876 2 123332 2346889999999998887743 57899998
Q ss_pred ee
Q 008496 561 FR 562 (563)
Q Consensus 561 ~~ 562 (563)
.+
T Consensus 536 ~~ 537 (567)
T 1qks_A 536 DK 537 (567)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 181
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.70 E-value=1e-12 Score=126.66 Aligned_cols=277 Identities=8% Similarity=0.032 Sum_probs=195.2
Q ss_pred CCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEE
Q 008496 213 GHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATG 292 (563)
Q Consensus 213 ~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg 292 (563)
.+...+.+++++|+|+++++...++.+.+|+.. +.. ..... ......+..++++++|.++++.
T Consensus 12 ~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~--------------~~~~~--~~~~~~~~~i~~~~~g~l~v~~ 74 (299)
T 2z2n_A 12 NQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKI--------------TEYPL--PTPDAKVMCLTISSDGEVWFTE 74 (299)
T ss_dssp SSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCE--------------EEEEC--SSTTCCEEEEEECTTSCEEEEE
T ss_pred CcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCe--------------EEecC--CcccCceeeEEECCCCCEEEeC
Confidence 445678999999999988877778899999865 321 00100 0123568999999999988887
Q ss_pred eCCCeEEEEEcCCceeEe-eccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCCceE
Q 008496 293 SYDGQARIWSTNGDLKCT-LSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSF 371 (563)
Q Consensus 293 ~~dg~i~vw~~~~~~~~~-~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (563)
..++.|..|+.++..... +......+.++.+.++|..+++...++.|.+||. ++.... +
T Consensus 75 ~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~-~------------------ 134 (299)
T 2z2n_A 75 NAANKIGRITKKGIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIRE-Y------------------ 134 (299)
T ss_dssp TTTTEEEEECTTSCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEE-E------------------
T ss_pred CCCCeEEEECCCCcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEE-e------------------
Confidence 778999999987654322 2234557899999999988887777888999987 443211 0
Q ss_pred EEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeee-ecccCCCEEEEEEcc
Q 008496 372 ATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHD-LREHSKEIYTIRWSP 450 (563)
Q Consensus 372 ~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~-~~~~~~~i~~~~~~p 450 (563)
. ...+...+.+++++++|+++++...++.|..||. +++.... +......+..+++.+
T Consensus 135 ------------~---------~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~ 192 (299)
T 2z2n_A 135 ------------E---------LPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGN 192 (299)
T ss_dssp ------------E---------CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECT
T ss_pred ------------c---------CCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECC
Confidence 0 0112335778999999998888777889999998 5554322 233445678899988
Q ss_pred CCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEE-EecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEE
Q 008496 451 TGSGTNNPNQQLILASASFDSTVKLWDVELGKLLY-SLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTY 529 (563)
Q Consensus 451 ~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~ 529 (563)
++. +.++...++.|.+||. +++... .+..+...+.+++++++|+++++...++.|.+|+. ++++ ..+
T Consensus 193 ~g~---------l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~-~~~ 260 (299)
T 2z2n_A 193 DDA---------LWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNII-EEY 260 (299)
T ss_dssp TSS---------EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEE-EEE
T ss_pred CCC---------EEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCce-EEE
Confidence 764 4555556789999999 666433 23334567899999999997777667889999998 5654 344
Q ss_pred ec---CCCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496 530 TG---NGGIFEVCWNKEGDKIAACFANHTVCVLDFR 562 (563)
Q Consensus 530 ~~---~~~i~~l~w~~~g~~la~~~~~~~v~v~~~~ 562 (563)
.. ...+.++++ ++|+..++.. ++.+..++.+
T Consensus 261 ~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~ 294 (299)
T 2z2n_A 261 PIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLI 294 (299)
T ss_dssp ECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC
T ss_pred eCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcC
Confidence 22 246889999 8888766654 5678777754
No 182
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.70 E-value=9.2e-15 Score=159.32 Aligned_cols=252 Identities=11% Similarity=0.124 Sum_probs=165.3
Q ss_pred CeEEEEECCCCCEEEEEeCCC-----eEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCcee
Q 008496 276 DVTTLDWNGEGTLLATGSYDG-----QARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWK 350 (563)
Q Consensus 276 ~V~~l~~s~~g~~l~sg~~dg-----~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~ 350 (563)
.+..++|||||++|+.+..++ .|++|++.+............+.+++|+|+|+.|+.++.++. ....
T Consensus 126 ~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~-------~~~~- 197 (710)
T 2xdw_A 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQ-------DGKS- 197 (710)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCC-------SSCC-
T ss_pred EEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceEEEEeCCCEEEEEEECCc-------cccc-
Confidence 588899999999999876543 899999876543322222223667999999999998887754 0000
Q ss_pred EEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcc--eeeec--CCCcceeEEEECCCCCEEEEEeC-----CCc
Q 008496 351 QQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRP--IKTFA--GHQGEVNCVKWDPTGSLLASCSD-----DVT 421 (563)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~--~~~~~--~h~~~i~~~~~~~~~~~las~s~-----dg~ 421 (563)
. +... .......|++|++++... ...+. .|...+..+.|+|||++|+.++. +..
T Consensus 198 ---~---~~~~-----------~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~ 260 (710)
T 2xdw_A 198 ---D---GTET-----------STNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNR 260 (710)
T ss_dssp ---S---SSCC-----------CCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCE
T ss_pred ---c---cccc-----------ccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccE
Confidence 0 0000 001123455566554432 12222 24555778999999999887765 568
Q ss_pred EEEEeCCC------Cc-eeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeC---CCeEEEEeCCCCe--EEEEecC
Q 008496 422 AKIWNMKQ------DK-YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASF---DSTVKLWDVELGK--LLYSLNG 489 (563)
Q Consensus 422 i~iwd~~~------~~-~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~---dg~i~iwd~~~~~--~~~~~~~ 489 (563)
|.+||+.+ +. ....+..+...+.. .|+|+|. .+++.+.. ++.|.+||+.++. ....+..
T Consensus 261 l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~--------~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~ 331 (710)
T 2xdw_A 261 LWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGT--------VFTFKTNRHSPNYRLINIDFTDPEESKWKVLVP 331 (710)
T ss_dssp EEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETT--------EEEEEECTTCTTCEEEEEETTSCCGGGCEEEEC
T ss_pred EEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCC--------EEEEEECCCCCCCEEEEEeCCCCCcccceeccC
Confidence 99999876 42 34455556555554 4777764 23333333 3479999998764 1234444
Q ss_pred CCC--CEEEEEEcCCCCEEEEEeCCCc--EEEEecCCCeeEEEEec-CCCEEEEEEcCCCCEEEEEECC----CeEEEEE
Q 008496 490 HRE--PVYSLAFSPTGEYLASGSLDKS--MHIWSLKEGKIVKTYTG-NGGIFEVCWNKEGDKIAACFAN----HTVCVLD 560 (563)
Q Consensus 490 h~~--~i~~l~~spdg~~lasgs~dg~--v~iw~~~~~~~~~~~~~-~~~i~~l~w~~~g~~la~~~~~----~~v~v~~ 560 (563)
|.. .+..++|++++.+++++..|+. |.+|++.+|+.++.+.. .+.+..++++|+++.|++.+.+ +++.+||
T Consensus 332 ~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d 411 (710)
T 2xdw_A 332 EHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCD 411 (710)
T ss_dssp CCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEE
T ss_pred CCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEE
Confidence 543 6888999988888899988884 66777777887776654 3457889999999988876554 4677777
Q ss_pred e
Q 008496 561 F 561 (563)
Q Consensus 561 ~ 561 (563)
+
T Consensus 412 ~ 412 (710)
T 2xdw_A 412 L 412 (710)
T ss_dssp T
T ss_pred C
Confidence 5
No 183
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.69 E-value=1.5e-14 Score=142.41 Aligned_cols=265 Identities=11% Similarity=0.055 Sum_probs=177.2
Q ss_pred ceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeCCC
Q 008496 217 EVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDG 296 (563)
Q Consensus 217 ~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg 296 (563)
.|.+++|+|++..++..+.++.++.|.-. ....+. .....+.+++|+++|++++++..++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~----~~~~~~~~~~~~~~g~l~~~~~~~~ 66 (333)
T 2dg1_A 7 DLPTLFYSGKSNSAVPIISESELQTITAE----------------PWLEIS----KKGLQLEGLNFDRQGQLFLLDVFEG 66 (333)
T ss_dssp CCCBCCSCGGGGCSSCCCCGGGSCEEECE----------------EEEEEE----SSCCCEEEEEECTTSCEEEEETTTC
T ss_pred ccceeeecCCccceeEEeecccCcccccc----------------eeEEEe----ccCccccCcEECCCCCEEEEECCCC
Confidence 46678899988777777888888888311 011111 1234578999999999888889999
Q ss_pred eEEEEEcCCceeE-eeccCCCCEEEEEeCCCCCEEEEeeCC----CcEEEEECCCCceeEEee--ecccCeEEEecCCCc
Q 008496 297 QARIWSTNGDLKC-TLSKHKGPIFSLKWNKKGDYLLTGSCD----KTAIVWDVKTEEWKQQFE--FHSGPTLDVDWRNNV 369 (563)
Q Consensus 297 ~i~vw~~~~~~~~-~~~~h~~~V~~l~~~~~~~~l~s~s~D----~~v~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~ 369 (563)
.|.+|+..+.... ....+...+.+++|+|+|+.+++...+ +.|.+||..++.....+. .....+.++.+..+.
T Consensus 67 ~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g 146 (333)
T 2dg1_A 67 NIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKG 146 (333)
T ss_dssp EEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTS
T ss_pred EEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCC
Confidence 9999998754433 333567789999999999888877666 689999998876553332 122345666666554
Q ss_pred eEEEEeC-------CCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEE-EEEeCCCcEEEEeCCC-Cceeee-----
Q 008496 370 SFATSST-------DNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLL-ASCSDDVTAKIWNMKQ-DKYVHD----- 435 (563)
Q Consensus 370 ~~~~~~~-------d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l-as~s~dg~i~iwd~~~-~~~~~~----- 435 (563)
.+..+.. .+.|+.++....+. ..+..+...+..++|+|+++.| ++.+.++.|.+|+..+ +..+..
T Consensus 147 ~l~v~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~ 225 (333)
T 2dg1_A 147 GFYFTDFRGYSTNPLGGVYYVSPDFRTV-TPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATI 225 (333)
T ss_dssp CEEEEECCCBTTBCCEEEEEECTTSCCE-EEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEE
T ss_pred CEEEEeccccccCCCceEEEEeCCCCEE-EEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceE
Confidence 4444333 24566665543332 2232233457899999999855 5556688999999864 222211
Q ss_pred ---ecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCC------CEEEEEEcCCCCEE
Q 008496 436 ---LREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHRE------PVYSLAFSPTGEYL 506 (563)
Q Consensus 436 ---~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~------~i~~l~~spdg~~l 506 (563)
+..+ ..+..+++++++. ++++...++.|.+||. .++.+..+..+.. .+.+++|+||+..|
T Consensus 226 ~~~~~~~-~~~~~i~~d~~G~---------l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L 294 (333)
T 2dg1_A 226 PYYFTGH-EGPDSCCIDSDDN---------LYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQL 294 (333)
T ss_dssp EEECCSS-SEEEEEEEBTTCC---------EEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEE
T ss_pred EEecCCC-CCCCceEECCCCC---------EEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEE
Confidence 1112 3567788888774 5666667899999998 4666666654332 58899999998777
Q ss_pred EEEeCCC
Q 008496 507 ASGSLDK 513 (563)
Q Consensus 507 asgs~dg 513 (563)
..++.++
T Consensus 295 ~v~~~~g 301 (333)
T 2dg1_A 295 IICSNDI 301 (333)
T ss_dssp EEEEECG
T ss_pred EEEeCcc
Confidence 6555553
No 184
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.69 E-value=1.6e-14 Score=143.79 Aligned_cols=262 Identities=9% Similarity=0.056 Sum_probs=174.6
Q ss_pred CCCEEEEEe------CCCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEEEEee----------CCCcEEEEECCCC
Q 008496 285 EGTLLATGS------YDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGS----------CDKTAIVWDVKTE 347 (563)
Q Consensus 285 ~g~~l~sg~------~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s----------~D~~v~iwd~~~~ 347 (563)
+++++++.. .|+.|.+||.. +++...+..+..+ .++|+|+|+++++++ .+++|.+||+.+.
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~ 91 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL 91 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence 445555543 36899999964 5666667666666 899999999999886 3678999999998
Q ss_pred ceeEEeeecc------cCeEEEecCCCc--eEEEEeC-CCeEEEEEcCCCcceee-ecCCCcceeEEEECCCC-CEEEEE
Q 008496 348 EWKQQFEFHS------GPTLDVDWRNNV--SFATSST-DNMIYVCKIGENRPIKT-FAGHQGEVNCVKWDPTG-SLLASC 416 (563)
Q Consensus 348 ~~~~~~~~~~------~~~~~~~~~~~~--~~~~~~~-d~~i~~~~~~~~~~~~~-~~~h~~~i~~~~~~~~~-~~las~ 416 (563)
+....+.... .....+.+..+. .+++... ++.|.+|++.+.+.+.. +.. . ....+.+.|++ ..+++.
T Consensus 92 ~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~-~-~~~~v~~~p~~~~~~~~~ 169 (361)
T 2oiz_A 92 TFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAA-A-GCWSVIPQPNRPRSFMTI 169 (361)
T ss_dssp CEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGG-T-TEEEEEECTTSSSEEEEE
T ss_pred cEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecC-C-CcceeEEcCCCCeeEEEE
Confidence 8887776531 223344454433 3333333 68999999998887766 442 1 12235677876 677889
Q ss_pred eCCCcEEEEeCCC-Cceeee------ecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeE--EEEe
Q 008496 417 SDDVTAKIWNMKQ-DKYVHD------LREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL--LYSL 487 (563)
Q Consensus 417 s~dg~i~iwd~~~-~~~~~~------~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~--~~~~ 487 (563)
+.||.+.+|++.. ++.... +.....++ .+.++|++ . .++..+.++.|.++|+..+.. +..+
T Consensus 170 ~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g--------~-~~~~~~~~~~v~v~d~~~~~~~~~~~~ 239 (361)
T 2oiz_A 170 CGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDK--------D-KAHFVSYYGNVYSADFSGDEVKVDGPW 239 (361)
T ss_dssp ETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECS--------S-EEEEEBTTSEEEEEECSSSSCEEEEEE
T ss_pred CCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccC--------C-EEEEEeCCCeEEEEEecCCCceecccc
Confidence 9999999998865 333311 11111111 11112222 1 234456889999999875432 2221
Q ss_pred cC------CC----CCEEEEEEcCCCCEEEEEeC-----------CCcEEEEecCCCeeEEEEecCCCEEEEEEcCCCCE
Q 008496 488 NG------HR----EPVYSLAFSPTGEYLASGSL-----------DKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDK 546 (563)
Q Consensus 488 ~~------h~----~~i~~l~~spdg~~lasgs~-----------dg~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~g~~ 546 (563)
.- +. .....++|+||++.+.++.. .+.|.+||+.++++++++.... +..++|+|||++
T Consensus 240 ~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-p~~ia~spdg~~ 318 (361)
T 2oiz_A 240 SLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-ALSMTIDQQRNL 318 (361)
T ss_dssp ESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-CCEEEEETTTTE
T ss_pred cccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC-eeEEEECCCCCE
Confidence 10 00 11112789999887766542 3489999999999999998877 999999999999
Q ss_pred EEEEECCCeEEEEEee
Q 008496 547 IAACFANHTVCVLDFR 562 (563)
Q Consensus 547 la~~~~~~~v~v~~~~ 562 (563)
|+++.. ++|.|||.+
T Consensus 319 l~v~n~-~~v~v~D~~ 333 (361)
T 2oiz_A 319 MLTLDG-GNVNVYDIS 333 (361)
T ss_dssp EEEECS-SCEEEEECS
T ss_pred EEEeCC-CeEEEEECC
Confidence 998876 899999964
No 185
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.69 E-value=5.7e-15 Score=159.71 Aligned_cols=235 Identities=9% Similarity=-0.008 Sum_probs=154.7
Q ss_pred CCeEEEEECCCCCEEEEEeCC----------CeEEEEEcCC------ceeEeec-cCCCCEEEEEeCCCCCEEEEeeCCC
Q 008496 275 KDVTTLDWNGEGTLLATGSYD----------GQARIWSTNG------DLKCTLS-KHKGPIFSLKWNKKGDYLLTGSCDK 337 (563)
Q Consensus 275 ~~V~~l~~s~~g~~l~sg~~d----------g~i~vw~~~~------~~~~~~~-~h~~~V~~l~~~~~~~~l~s~s~D~ 337 (563)
..+..++|||||+.|++++.+ ..|++|+..+ .....+. .+...+..++|+|+|++|+.++.++
T Consensus 130 ~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~ 209 (662)
T 3azo_A 130 LRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDH 209 (662)
T ss_dssp EEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECT
T ss_pred ccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCC
Confidence 457899999999999999877 5899999887 5556666 6667888899999999999887653
Q ss_pred --------cEEEEECC-CC---ceeEEeeecccCeEEEecCCCc-eEEEEeCCC--eEEEEEcCCCcceeeecCCCcc--
Q 008496 338 --------TAIVWDVK-TE---EWKQQFEFHSGPTLDVDWRNNV-SFATSSTDN--MIYVCKIGENRPIKTFAGHQGE-- 400 (563)
Q Consensus 338 --------~v~iwd~~-~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~--~i~~~~~~~~~~~~~~~~h~~~-- 400 (563)
.|.+||+. ++ ........+...+..+.|..+. .++++..++ .|++++...+.......++...
T Consensus 210 ~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~ 289 (662)
T 3azo_A 210 PRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAG 289 (662)
T ss_dssp TCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSC
T ss_pred CCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccC
Confidence 79999998 56 4444444445677888887554 445555666 5667766555544433333322
Q ss_pred ------eeEEEECCCCCEEEEEeCCCcEEEE--eCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCe
Q 008496 401 ------VNCVKWDPTGSLLASCSDDVTAKIW--NMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDST 472 (563)
Q Consensus 401 ------i~~~~~~~~~~~las~s~dg~i~iw--d~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~ 472 (563)
+.+++|+|+++++++++. +.++|| |..++. +..+..|...+..+ |++++. ..++++++.+..
T Consensus 290 p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~~~~~~~-~s~~~~-------~~~~~~~~~~~~ 359 (662)
T 3azo_A 290 PLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDAAGPWTEWAAT-LTVSGT-------RAVGVAASPRTA 359 (662)
T ss_dssp CCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECCSSCCEEEEE-EEEETT-------EEEEEEEETTEE
T ss_pred ccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEecCCCCeEEEE-EecCCC-------EEEEEEcCCCCC
Confidence 567899999999999999 999999 555554 56677777767666 244432 245666676654
Q ss_pred --EEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 008496 473 --VKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWS 519 (563)
Q Consensus 473 --i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~ 519 (563)
|.+||+.+++.......+...+....+++...+.+.+..+..|..|-
T Consensus 360 ~~i~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~dg~~i~~~~ 408 (662)
T 3azo_A 360 YEVVELDTVTGRARTIGARHTDPVDPAYYPEPQIRTFTAPDGREIHAHI 408 (662)
T ss_dssp EEEEEEETTTCCEEEEESCCCCSSCGGGSCCCEEEEEECTTSCEEEEEE
T ss_pred CEEEEEECCCCceEEeecCCcccCCccccCcceEEEEEcCCCCEEEEEE
Confidence 55557767765443344433333333333333333333333555544
No 186
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.68 E-value=1.2e-14 Score=158.32 Aligned_cols=244 Identities=12% Similarity=0.076 Sum_probs=167.8
Q ss_pred CCCCceEEEEECCCCCEEEEeeCCC-----cEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCC
Q 008496 213 GHTSEVCACAWSPAGSLLASGSGDS-----TARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 287 (563)
Q Consensus 213 ~h~~~V~~~~~sp~~~~latgs~D~-----~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~ 287 (563)
+|...+..++|||||++||.++.++ .|++||+.++.... ..+.. ..+..++|+|||+
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~---------~~~~~---------~~~~~~~wspDg~ 183 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELP---------DVLER---------VKFSCMAWTHDGK 183 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEE---------EEEEE---------ECSCCEEECTTSS
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCc---------ccccC---------cccceEEEEeCCC
Confidence 4555788999999999998876543 89999998654210 01110 1256789999999
Q ss_pred EEEEEeCCCe----------------EEEEEcCCce---eEe--eccCCCCEEEEEeCCCCCEEEEeeC-----CCcEEE
Q 008496 288 LLATGSYDGQ----------------ARIWSTNGDL---KCT--LSKHKGPIFSLKWNKKGDYLLTGSC-----DKTAIV 341 (563)
Q Consensus 288 ~l~sg~~dg~----------------i~vw~~~~~~---~~~--~~~h~~~V~~l~~~~~~~~l~s~s~-----D~~v~i 341 (563)
.|+.++.++. |++|++.+.. ... ...|...+.++.|+|+|++|+.++. +..|.+
T Consensus 184 ~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~ 263 (710)
T 2xdw_A 184 GMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWY 263 (710)
T ss_dssp EEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEE
T ss_pred EEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEE
Confidence 9999988866 9999986532 222 2335566889999999999987765 456777
Q ss_pred EECCC------CceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEE
Q 008496 342 WDVKT------EEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLAS 415 (563)
Q Consensus 342 wd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las 415 (563)
||+.+ +.. ....+..+...+.. .|+|+|+.|+.
T Consensus 264 ~d~~~~~~~~~~~~----------------------------------------~~~~l~~~~~~~~~-~~s~dg~~l~~ 302 (710)
T 2xdw_A 264 CDLQQESNGITGIL----------------------------------------KWVKLIDNFEGEYD-YVTNEGTVFTF 302 (710)
T ss_dssp EEGGGSSSSSCSSC----------------------------------------CCEEEECSSSSCEE-EEEEETTEEEE
T ss_pred EECcccccccCCcc----------------------------------------ceEEeeCCCCcEEE-EEeccCCEEEE
Confidence 77654 210 11222333333333 47788887776
Q ss_pred EeCC----CcEEEEeCCCCce--eeeecccCC--CEEEEEEccCCCCCCCCCCcEEEEEEeCCCe--EEEEeCCCCeEEE
Q 008496 416 CSDD----VTAKIWNMKQDKY--VHDLREHSK--EIYTIRWSPTGSGTNNPNQQLILASASFDST--VKLWDVELGKLLY 485 (563)
Q Consensus 416 ~s~d----g~i~iwd~~~~~~--~~~~~~~~~--~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~--i~iwd~~~~~~~~ 485 (563)
.+.. +.|.+||+.++.. ...+..|.. .+..+.|++.+ .++++...|+. |.+||+.+|+.+.
T Consensus 303 ~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---------~lv~~~~~~g~~~l~~~~~~~g~~~~ 373 (710)
T 2xdw_A 303 KTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSN---------FLVLCYLHDVKNTLQLHDLATGALLK 373 (710)
T ss_dssp EECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTT---------EEEEEEEETTEEEEEEEETTTCCEEE
T ss_pred EECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCC---------EEEEEEEECCEEEEEEEECCCCCEEE
Confidence 6653 3599999887642 244445544 57788888544 37788888885 5667877788878
Q ss_pred EecCCCCCEEEEEEcCCCCEEEEE-e---CCCcEEEEecCCCe
Q 008496 486 SLNGHREPVYSLAFSPTGEYLASG-S---LDKSMHIWSLKEGK 524 (563)
Q Consensus 486 ~~~~h~~~i~~l~~spdg~~lasg-s---~dg~v~iw~~~~~~ 524 (563)
.+..+...|..++++|++..|+.. + ..++|++||+.+++
T Consensus 374 ~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 374 IFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred ecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 888777788999999999766532 2 34789999998876
No 187
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.67 E-value=4.6e-14 Score=136.38 Aligned_cols=259 Identities=14% Similarity=0.100 Sum_probs=167.0
Q ss_pred eeEecCCCCceEEEEECCCCC-EEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCC
Q 008496 208 VTILEGHTSEVCACAWSPAGS-LLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG 286 (563)
Q Consensus 208 ~~~l~~h~~~V~~~~~sp~~~-~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g 286 (563)
+..+..+.....+++|+|+++ +++++..++.|.+|+..++ . ..+. .....+.+++++++|
T Consensus 20 ~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~--------------~~~~----~~~~~~~~l~~~~dg 80 (296)
T 3e5z_A 20 ARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-L--------------SPEM----HPSHHQNGHCLNKQG 80 (296)
T ss_dssp CEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-E--------------EEEE----SSCSSEEEEEECTTC
T ss_pred EEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-e--------------EEEE----CCCCCcceeeECCCC
Confidence 345555666778999999998 8888888999999997643 1 0111 123568899999999
Q ss_pred CEEEEEeCCCeEEEEEc-CCceeEeeccC----CCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeE
Q 008496 287 TLLATGSYDGQARIWST-NGDLKCTLSKH----KGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTL 361 (563)
Q Consensus 287 ~~l~sg~~dg~i~vw~~-~~~~~~~~~~h----~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~ 361 (563)
+++++...++.|.+|+. .+......... ...+..++++|+|+.+++.+..++...+...... .
T Consensus 81 ~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~----~-------- 148 (296)
T 3e5z_A 81 HLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGE----M-------- 148 (296)
T ss_dssp CEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCC----C--------
T ss_pred cEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCcccccccccccccc----c--------
Confidence 98888777899999998 55543332221 1245678899999887773321110000000000 0
Q ss_pred EEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCC-CCce---eeeec
Q 008496 362 DVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMK-QDKY---VHDLR 437 (563)
Q Consensus 362 ~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~-~~~~---~~~~~ 437 (563)
....+.|+.++.. ..+..+..+....+.++|+|+++++++.+.++.|.+|++. ++.. ...+.
T Consensus 149 ------------~~~~~~l~~~~~~--g~~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~ 214 (296)
T 3e5z_A 149 ------------ELPGRWVFRLAPD--GTLSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFT 214 (296)
T ss_dssp ------------CSSSCEEEEECTT--SCEEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEEC
T ss_pred ------------cCCCcEEEEECCC--CCEEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEee
Confidence 0001122222221 1122233344567889999999998888888999999986 4443 22232
Q ss_pred ccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEE-cCCCCEEEEEeCCCcEE
Q 008496 438 EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAF-SPTGEYLASGSLDKSMH 516 (563)
Q Consensus 438 ~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~-spdg~~lasgs~dg~v~ 516 (563)
.+...+..+++.++|. ++++. ++.|.+||.. ++.+..+..+.. +++++| +|+++.|.+++.++ +.
T Consensus 215 ~~~~~p~~i~~d~~G~---------l~v~~--~~~v~~~~~~-g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~-l~ 280 (296)
T 3e5z_A 215 VEPGKTDGLRVDAGGL---------IWASA--GDGVHVLTPD-GDELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTE-FW 280 (296)
T ss_dssp CSSSCCCSEEEBTTSC---------EEEEE--TTEEEEECTT-SCEEEEEECSSC-CCEEEEESTTSCEEEEEETTE-EE
T ss_pred CCCCCCCeEEECCCCC---------EEEEc--CCeEEEECCC-CCEEEEEECCCC-ceeEEEECCCCCEEEEEcCCe-EE
Confidence 3444556788888774 33333 7899999987 778777777766 899999 69999999888765 55
Q ss_pred EEecCCCee
Q 008496 517 IWSLKEGKI 525 (563)
Q Consensus 517 iw~~~~~~~ 525 (563)
-++..+.++
T Consensus 281 ~~~~~~~~~ 289 (296)
T 3e5z_A 281 SIETNVRGL 289 (296)
T ss_dssp EEECSCCBC
T ss_pred EEEcccccc
Confidence 666666554
No 188
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.64 E-value=5.2e-15 Score=160.79 Aligned_cols=243 Identities=10% Similarity=0.056 Sum_probs=162.8
Q ss_pred CCCCceEEEEECCCCCEEE-----EeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCC
Q 008496 213 GHTSEVCACAWSPAGSLLA-----SGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 287 (563)
Q Consensus 213 ~h~~~V~~~~~sp~~~~la-----tgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~ 287 (563)
+|...+..++|||||++|| +|+.+..|++||+.++..... . .. . ......++|+|||+
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~---~--------~~----~--~~~~~~~~wspDg~ 180 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKV---D--------VI----E--GGKYATPKWTPDSK 180 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSS---C--------CB----S--CCTTCCCEECTTSS
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCC---c--------cc----C--cccccceEEecCCC
Confidence 5666789999999999998 455567999999987653200 0 00 0 01125689999999
Q ss_pred EEEEEeCCCe-------------EEEEEcCCce-----eEeeccCCCCEEEEEeCCCCCEEEEeeCCC----cEEEEECC
Q 008496 288 LLATGSYDGQ-------------ARIWSTNGDL-----KCTLSKHKGPIFSLKWNKKGDYLLTGSCDK----TAIVWDVK 345 (563)
Q Consensus 288 ~l~sg~~dg~-------------i~vw~~~~~~-----~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~----~v~iwd~~ 345 (563)
.|+.++.|.. |++|+..+.. ......|...+.++.|+|+|++|+.++.++ .|.+||..
T Consensus 181 ~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~ 260 (695)
T 2bkl_A 181 GFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPG 260 (695)
T ss_dssp EEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTT
T ss_pred EEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCC
Confidence 9999998776 9999986432 223344667889999999999998887766 67777766
Q ss_pred CCceeEEeeecccCeEEEecCCCceEEEEe----CCCeEEEEEcCCCcc---eeeecCC-CcceeEEEECCCCCEEEEEe
Q 008496 346 TEEWKQQFEFHSGPTLDVDWRNNVSFATSS----TDNMIYVCKIGENRP---IKTFAGH-QGEVNCVKWDPTGSLLASCS 417 (563)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~d~~i~~~~~~~~~~---~~~~~~h-~~~i~~~~~~~~~~~las~s 417 (563)
++.+.. +..+........|.++. ++..+ .++.|++|++....+ ...+..+ ...+..++|+ ++.++++..
T Consensus 261 ~~~~~~-l~~~~~~~~~~~~~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~ 337 (695)
T 2bkl_A 261 EKDFRL-LVKGVGAKYEVHAWKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYL 337 (695)
T ss_dssp CSSCEE-EEECSSCCEEEEEETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEE
T ss_pred CCceEE-eecCCCceEEEEecCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEE
Confidence 665443 33333334444455555 44433 357899999876543 2333333 4457888888 778899999
Q ss_pred CCCcEEEEeCC-CCceeeeeccc-CCCEEEEEEccCCCCCCCCCCcEEEEEEe---CCCeEEEEeCCCCeE
Q 008496 418 DDVTAKIWNMK-QDKYVHDLREH-SKEIYTIRWSPTGSGTNNPNQQLILASAS---FDSTVKLWDVELGKL 483 (563)
Q Consensus 418 ~dg~i~iwd~~-~~~~~~~~~~~-~~~i~~~~~~p~~~~~~~~~~~~~l~s~s---~dg~i~iwd~~~~~~ 483 (563)
.|+..+||.+. .+.....+..+ ...+..+.++|++. .++++.+ ..++|++||+.+++.
T Consensus 338 ~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~--------~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 338 KDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLD--------DAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp ETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCS--------EEEEEEEETTEEEEEEEEETTTCCE
T ss_pred ECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCC--------EEEEEEcCCCCCCEEEEEECCCCcE
Confidence 99998888654 34445555544 45566667766553 2333332 247899999988764
No 189
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.63 E-value=1.1e-13 Score=131.64 Aligned_cols=235 Identities=7% Similarity=-0.039 Sum_probs=160.5
Q ss_pred CEEEEEeCCCCCEEE-EeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCC-ceEEEEeCCCeEEEEEcCCCcceeee
Q 008496 317 PIFSLKWNKKGDYLL-TGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNN-VSFATSSTDNMIYVCKIGENRPIKTF 394 (563)
Q Consensus 317 ~V~~l~~~~~~~~l~-s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~ 394 (563)
...+++++++|+.++ +.+.++.|.+||..+.............+..+.+..+ ..+++.. ++.|++|+....... .+
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~-~~ 102 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT-VL 102 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCE-EC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEe-ee
Confidence 568899999998777 5577899999997665432211112123445555443 3444444 888999987654432 23
Q ss_pred c-CCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeE
Q 008496 395 A-GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTV 473 (563)
Q Consensus 395 ~-~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i 473 (563)
. .....+.+++++++|+++++...++.|.+|+..+.............+..+++.|++. ++++...++.|
T Consensus 103 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~---------l~v~~~~~~~i 173 (270)
T 1rwi_B 103 PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGN---------VYVTDTDNNRV 173 (270)
T ss_dssp CCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCC---------EEEEEGGGTEE
T ss_pred ecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCC---------EEEEECCCCEE
Confidence 2 2335688999999999888888888999998665543322222233567788888764 56666667899
Q ss_pred EEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEec-CCCEEEEEEcCCCCEEEEEEC
Q 008496 474 KLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG-NGGIFEVCWNKEGDKIAACFA 552 (563)
Q Consensus 474 ~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~-~~~i~~l~w~~~g~~la~~~~ 552 (563)
.+||............+...+.+++++|+|.++++...++.|.+|+............ ...+.+++++++|+.+++...
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~ 253 (270)
T 1rwi_B 174 VKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRG 253 (270)
T ss_dssp EEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGG
T ss_pred EEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECC
Confidence 9999887665443333335689999999998888877788999999876544332212 246889999999998888888
Q ss_pred CCeEEEEEee
Q 008496 553 NHTVCVLDFR 562 (563)
Q Consensus 553 ~~~v~v~~~~ 562 (563)
++.|.+++..
T Consensus 254 ~~~v~~~~~~ 263 (270)
T 1rwi_B 254 NDRVVKLTSL 263 (270)
T ss_dssp GTEEEEECCC
T ss_pred CCEEEEEcCC
Confidence 9999999764
No 190
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.63 E-value=1e-13 Score=131.73 Aligned_cols=238 Identities=8% Similarity=0.012 Sum_probs=165.1
Q ss_pred CeEEEEECCCCCEEE-EEeCCCeEEEEEcCCceeEee-ccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEe
Q 008496 276 DVTTLDWNGEGTLLA-TGSYDGQARIWSTNGDLKCTL-SKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF 353 (563)
Q Consensus 276 ~V~~l~~s~~g~~l~-sg~~dg~i~vw~~~~~~~~~~-~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~ 353 (563)
...+++++++|++++ +.+.++.|.+|+..+.....+ ..+...+.+++++++|+.+++.. ++.|.+||..+..... +
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~-~ 102 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTV-L 102 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEE-C
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEee-e
Confidence 578899999999777 547789999998765443332 22334678899999998666655 8899999987654332 2
Q ss_pred ee-cccCeEEEecCC-CceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCc
Q 008496 354 EF-HSGPTLDVDWRN-NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK 431 (563)
Q Consensus 354 ~~-~~~~~~~~~~~~-~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~ 431 (563)
.. ....+..+.+.. ...+++...++.|++++.+..............+.+++++++|+++++...++.|.+||.....
T Consensus 103 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~ 182 (270)
T 1rwi_B 103 PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNN 182 (270)
T ss_dssp CCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCC
T ss_pred ecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCc
Confidence 21 113455565543 3455666677889888765544332222333467889999999988888778899999988766
Q ss_pred eeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeC
Q 008496 432 YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSL 511 (563)
Q Consensus 432 ~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~ 511 (563)
.......+...+..+++.++|. ++++...++.|.+||............+...+.+++++|+|+++++...
T Consensus 183 ~~~~~~~~~~~p~~i~~d~~g~---------l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~ 253 (270)
T 1rwi_B 183 QVVLPFTDITAPWGIAVDEAGT---------VYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRG 253 (270)
T ss_dssp EEECCCSSCCSEEEEEECTTCC---------EEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGG
T ss_pred eEeecccCCCCceEEEECCCCC---------EEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECC
Confidence 5433333336688999988764 5666667889999998765443322233356899999999998899889
Q ss_pred CCcEEEEecCCCe
Q 008496 512 DKSMHIWSLKEGK 524 (563)
Q Consensus 512 dg~v~iw~~~~~~ 524 (563)
+++|++|++...+
T Consensus 254 ~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 254 NDRVVKLTSLEHH 266 (270)
T ss_dssp GTEEEEECCCGGG
T ss_pred CCEEEEEcCCCcc
Confidence 9999999987544
No 191
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.63 E-value=3.1e-13 Score=132.66 Aligned_cols=280 Identities=10% Similarity=0.027 Sum_probs=189.7
Q ss_pred CCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcC-CceeEeecc
Q 008496 235 GDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSK 313 (563)
Q Consensus 235 ~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~-~~~~~~~~~ 313 (563)
.+++|.+||..+++...... ..............+.+. +++++++...++.|.+||.. ++...++.
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~-----------~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~- 81 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVF-----------YRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT- 81 (328)
T ss_dssp CCBEEEEEETTTTEEECSHH-----------HHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-
T ss_pred CCceEEEEECCCCEEhhhhH-----------hhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-
Confidence 48899999987654211100 000000111235666664 35566666678999999986 55556664
Q ss_pred CCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeeccc-----CeEEEecCCCceEEEEe-CCCeEEEEEcCC
Q 008496 314 HKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSG-----PTLDVDWRNNVSFATSS-TDNMIYVCKIGE 387 (563)
Q Consensus 314 h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~-~d~~i~~~~~~~ 387 (563)
.......+++++++...++...++.|.+||+.+++....+..... ....+.+.+...+++.. .++.|.+++..+
T Consensus 82 ~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~~~~~v~viD~~t 161 (328)
T 3dsm_A 82 GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCWSYQNRILKIDTET 161 (328)
T ss_dssp CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEETTEEEEEECTTCCEEEEEETTT
T ss_pred CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEECCEEEEEcCCCCCEEEEEECCC
Confidence 345678999999984444444789999999999988777665430 22234444555556654 488999999998
Q ss_pred CcceeeecCCCcceeEEEECCCCCEEEEEeCC----------CcEEEEeCCCCceeeeeccc-CCCEEEEEEccCCCCCC
Q 008496 388 NRPIKTFAGHQGEVNCVKWDPTGSLLASCSDD----------VTAKIWNMKQDKYVHDLREH-SKEIYTIRWSPTGSGTN 456 (563)
Q Consensus 388 ~~~~~~~~~h~~~i~~~~~~~~~~~las~s~d----------g~i~iwd~~~~~~~~~~~~~-~~~i~~~~~~p~~~~~~ 456 (563)
.+.+..+... .....++++|+|++++++..+ +.|.+||..+++....+... ......++++|++.
T Consensus 162 ~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~--- 237 (328)
T 3dsm_A 162 DKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRD--- 237 (328)
T ss_dssp TEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSC---
T ss_pred CeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCC---
Confidence 8877666542 245688999999988877665 78999999988877665432 23578999999765
Q ss_pred CCCCcEEEEEEeCCCeEEEEeCCCCeEEEE--ecCCCCCEEEEEEcC-CCCEEEEE----eCCCcEEEEecCCCeeEEEE
Q 008496 457 NPNQQLILASASFDSTVKLWDVELGKLLYS--LNGHREPVYSLAFSP-TGEYLASG----SLDKSMHIWSLKEGKIVKTY 529 (563)
Q Consensus 457 ~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~--~~~h~~~i~~l~~sp-dg~~lasg----s~dg~v~iw~~~~~~~~~~~ 529 (563)
.|..+.. .|.+||..+++.... +.........++++| ++.++++. ..++.|.+||.. |++++++
T Consensus 238 ------~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i 308 (328)
T 3dsm_A 238 ------TLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEF 308 (328)
T ss_dssp ------EEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEE
T ss_pred ------EEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEE
Confidence 3433332 899999988775321 121235678999999 56666666 578899999998 9999988
Q ss_pred ecCCCEEEEEE
Q 008496 530 TGNGGIFEVCW 540 (563)
Q Consensus 530 ~~~~~i~~l~w 540 (563)
........++|
T Consensus 309 ~~G~~P~~~~~ 319 (328)
T 3dsm_A 309 YVGIIPGAFCW 319 (328)
T ss_dssp EEEESEEEEEE
T ss_pred EeccCcceEEE
Confidence 76555666666
No 192
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.62 E-value=3.9e-13 Score=128.16 Aligned_cols=242 Identities=14% Similarity=0.149 Sum_probs=175.1
Q ss_pred CCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCC
Q 008496 226 AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNG 305 (563)
Q Consensus 226 ~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~ 305 (563)
.+++|++++.|+.|.+||..+++. +..+... ....+.+++++|+|++++ +.++.|..|+.+|
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~-------------~w~~~~~---~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~~G 65 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEI-------------VWEYPLE---KGWECNSVAATKAGEILF--SYSKGAKMITRDG 65 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEE-------------EEEEECC---TTCCCCEEEECTTSCEEE--ECBSEEEEECTTS
T ss_pred CCcEEEeeCCCCEEEEEECCCCeE-------------EEEeCCC---ccCCCcCeEECCCCCEEE--eCCCCEEEECCCC
Confidence 457899999999999999876642 1122111 113578889999999988 4578899999998
Q ss_pred ceeEeeccC-CCCEEEEEeCCCCCEEEEeeC-CCcEEEEECCCCceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEE
Q 008496 306 DLKCTLSKH-KGPIFSLKWNKKGDYLLTGSC-DKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVC 383 (563)
Q Consensus 306 ~~~~~~~~h-~~~V~~l~~~~~~~~l~s~s~-D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~ 383 (563)
+.+..+..+ ...+.++.+.++|+.+++.+. ++.+..+|. +++.+..+..
T Consensus 66 ~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~---------------------------- 116 (276)
T 3no2_A 66 RELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEF---------------------------- 116 (276)
T ss_dssp CEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEE----------------------------
T ss_pred CEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEec----------------------------
Confidence 888877765 357889999999999999887 777777775 5554443321
Q ss_pred EcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEE
Q 008496 384 KIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLI 463 (563)
Q Consensus 384 ~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~ 463 (563)
... ..++......+++.++|+++++.+.++.|.+||.. ++.+..+... ...+++...+++. +
T Consensus 117 --~~~-----~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~-~~~~~~~~~~~g~---------~ 178 (276)
T 3no2_A 117 --ETG-----IERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLS-GTPFSSAFLDNGD---------C 178 (276)
T ss_dssp --CCS-----CSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECS-SCCCEEEECTTSC---------E
T ss_pred --cCC-----CCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECC-CCccceeEcCCCC---------E
Confidence 100 01111234456778999999999999999999988 8888777654 3455666667664 6
Q ss_pred EEEEeCCCeEEEEeCCCCeEEEEecCCC------CCEEEEEEcCCCCEEEEEeC--C------CcEEEEec-CCCeeEEE
Q 008496 464 LASASFDSTVKLWDVELGKLLYSLNGHR------EPVYSLAFSPTGEYLASGSL--D------KSMHIWSL-KEGKIVKT 528 (563)
Q Consensus 464 l~s~s~dg~i~iwd~~~~~~~~~~~~h~------~~i~~l~~spdg~~lasgs~--d------g~v~iw~~-~~~~~~~~ 528 (563)
+++++.++.|..+|..+|+.++++..+. ..+..++..++|..+++... . +..+++.+ .+|+++.+
T Consensus 179 ~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~ 258 (276)
T 3no2_A 179 LVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQ 258 (276)
T ss_dssp EEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEE
T ss_pred EEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEE
Confidence 7777778899999999999999986432 22788999999999888741 1 23355666 68889888
Q ss_pred EecC
Q 008496 529 YTGN 532 (563)
Q Consensus 529 ~~~~ 532 (563)
|...
T Consensus 259 ~~~~ 262 (276)
T 3no2_A 259 LNDK 262 (276)
T ss_dssp ECCT
T ss_pred ecCc
Confidence 8654
No 193
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.62 E-value=2e-13 Score=130.22 Aligned_cols=212 Identities=18% Similarity=0.141 Sum_probs=161.4
Q ss_pred CCCEEEEEeCCCeEEEEEc-CCceeEeeccCC-CCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEE
Q 008496 285 EGTLLATGSYDGQARIWST-NGDLKCTLSKHK-GPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLD 362 (563)
Q Consensus 285 ~g~~l~sg~~dg~i~vw~~-~~~~~~~~~~h~-~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~ 362 (563)
.+++|++++.++.|.+||. +|+....+..+. ..+.++.+.|+|+.++ +.++.|..||. +++.+..+..
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~------- 73 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAA------- 73 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEEC-------
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcC-------
Confidence 4688999999999999998 888888887766 4678899999999888 35778999998 6664433321
Q ss_pred EecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeC-CCcEEEEeCCCCceeeeecc---
Q 008496 363 VDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD-DVTAKIWNMKQDKYVHDLRE--- 438 (563)
Q Consensus 363 ~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~-dg~i~iwd~~~~~~~~~~~~--- 438 (563)
++...+.++.+.++|+++++.+. ++.+..+|. +++.+..+..
T Consensus 74 ---------------------------------~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~ 119 (276)
T 3no2_A 74 ---------------------------------PAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETG 119 (276)
T ss_dssp ---------------------------------CTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCS
T ss_pred ---------------------------------CCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCC
Confidence 01124567788899999888877 777777775 5555544431
Q ss_pred ---cCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcE
Q 008496 439 ---HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSM 515 (563)
Q Consensus 439 ---~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v 515 (563)
+......+...++|. ++++.+.++.|..||.. |+.++++... ..+.++.+.++|..+++++.+++|
T Consensus 120 ~~~~~~~~~~v~~~~~G~---------~lv~~~~~~~v~~~d~~-G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v 188 (276)
T 3no2_A 120 IERPHAQFRQINKNKKGN---------YLVPLFATSEVREIAPN-GQLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCF 188 (276)
T ss_dssp CSSGGGSCSCCEECTTSC---------EEEEETTTTEEEEECTT-SCEEEEEECS-SCCCEEEECTTSCEEEECBTTSEE
T ss_pred CCcccccccCceECCCCC---------EEEEecCCCEEEEECCC-CCEEEEEECC-CCccceeEcCCCCEEEEeCCCCeE
Confidence 112233344555553 67888899999999998 9999998765 345678889999999999988899
Q ss_pred EEEecCCCeeEEEEecCC-------CEEEEEEcCCCCEEEEEE
Q 008496 516 HIWSLKEGKIVKTYTGNG-------GIFEVCWNKEGDKIAACF 551 (563)
Q Consensus 516 ~iw~~~~~~~~~~~~~~~-------~i~~l~w~~~g~~la~~~ 551 (563)
..+|..+|+++..+.... .+..++..++|+.+++.+
T Consensus 189 ~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 189 VQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp EEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred EEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence 999999999999986421 267888999999998886
No 194
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.60 E-value=1.4e-11 Score=118.71 Aligned_cols=270 Identities=9% Similarity=0.050 Sum_probs=187.5
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEEcCCceeE-eeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEe
Q 008496 275 KDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKC-TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF 353 (563)
Q Consensus 275 ~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~-~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~ 353 (563)
..+.++++.++|++.++...++.|.+|+..+.... .+..+...+.++.+.++|+.+++...++.|..||.. ++.. .+
T Consensus 20 ~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~-~~ 97 (300)
T 2qc5_A 20 SGPYGITSSEDGKVWFTQHKANKISSLDQSGRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFT-EY 97 (300)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-EE
T ss_pred CCcceeeECCCCCEEEEcCCCCeEEEECCCCceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeE-Ee
Confidence 46889999999998888778899999998855433 223344678999999999888877778899999987 5543 23
Q ss_pred ee--cccCeEEEecCC-CceEEEEeCCCeEEEEEcCCCcce-eeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCC
Q 008496 354 EF--HSGPTLDVDWRN-NVSFATSSTDNMIYVCKIGENRPI-KTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ 429 (563)
Q Consensus 354 ~~--~~~~~~~~~~~~-~~~~~~~~~d~~i~~~~~~~~~~~-~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~ 429 (563)
.. ....+..+.... ...+++...++.|+.++.. ++.. ..+......+.++++++++++.++...++.|..|+. +
T Consensus 98 ~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~ 175 (300)
T 2qc5_A 98 PLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-T 175 (300)
T ss_dssp ECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-T
T ss_pred cCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-C
Confidence 22 223455555543 3455555557788888876 3322 223334456889999999998777777889999998 4
Q ss_pred Cceee-eecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEE-EecCCCCCEEEEEEcCCCCEEE
Q 008496 430 DKYVH-DLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLY-SLNGHREPVYSLAFSPTGEYLA 507 (563)
Q Consensus 430 ~~~~~-~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-~~~~h~~~i~~l~~spdg~~la 507 (563)
+.... .+..+...+..+++.+++. +.++....+.|.+||. +++... .+..+...+.+++++++|++++
T Consensus 176 g~~~~~~~~~~~~~~~~i~~d~~g~---------l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v 245 (300)
T 2qc5_A 176 GKLEEYPLPTNAAAPVGITSGNDGA---------LWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWF 245 (300)
T ss_dssp CCEEEEECSSTTCCEEEEEECTTSS---------EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEE
T ss_pred CcEEEeeCCCCCCCcceEEECCCCC---------EEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEE
Confidence 44332 2223345678888888764 4555555678999998 455433 3334456689999999999777
Q ss_pred EEeCCCcEEEEecCCCeeEEEEec---CCCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496 508 SGSLDKSMHIWSLKEGKIVKTYTG---NGGIFEVCWNKEGDKIAACFANHTVCVLDFR 562 (563)
Q Consensus 508 sgs~dg~v~iw~~~~~~~~~~~~~---~~~i~~l~w~~~g~~la~~~~~~~v~v~~~~ 562 (563)
+...++.|..|+. +++.. .+.. ...+.+++.+++|+..++.. + .|..+|.+
T Consensus 246 ~~~~~~~i~~~~~-~g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p~ 299 (300)
T 2qc5_A 246 TEWGANQIGRITN-DNTIQ-EYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNLN 299 (300)
T ss_dssp EETTTTEEEEECT-TSCEE-EEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEEC
T ss_pred eccCCCeEEEECC-CCcEE-EEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCCC
Confidence 7767789999998 55543 3322 34578899999998666555 5 78777754
No 195
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.60 E-value=6.4e-14 Score=152.22 Aligned_cols=266 Identities=11% Similarity=0.037 Sum_probs=172.9
Q ss_pred CCCCEEEEEeCCC---eEEEE--EcCCceeEee-------ccCCCCEEEEEeCCCCCEEE-----EeeCCCcEEEEECCC
Q 008496 284 GEGTLLATGSYDG---QARIW--STNGDLKCTL-------SKHKGPIFSLKWNKKGDYLL-----TGSCDKTAIVWDVKT 346 (563)
Q Consensus 284 ~~g~~l~sg~~dg---~i~vw--~~~~~~~~~~-------~~h~~~V~~l~~~~~~~~l~-----s~s~D~~v~iwd~~~ 346 (563)
|+|.+++....++ .-.|| +..+.....+ .+|...+.+++|||+|++|+ +|+.+.+|++||+.+
T Consensus 77 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~t 156 (695)
T 2bkl_A 77 RRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDS 156 (695)
T ss_dssp EETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTT
T ss_pred EECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCC
Confidence 4566666555443 23444 3333222222 24556789999999999988 444557899999999
Q ss_pred CceeEEeeecccCeEEEecCCC-ceEEEEeCCCe-------------EEEEEcCCCcc--eeee--cCCCcceeEEEECC
Q 008496 347 EEWKQQFEFHSGPTLDVDWRNN-VSFATSSTDNM-------------IYVCKIGENRP--IKTF--AGHQGEVNCVKWDP 408 (563)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~-------------i~~~~~~~~~~--~~~~--~~h~~~i~~~~~~~ 408 (563)
++..............+.|.++ ..|+.++.+.. |++|++++... ...+ ..|...+.++.|+|
T Consensus 157 g~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~Sp 236 (695)
T 2bkl_A 157 GEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSR 236 (695)
T ss_dssp CCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECT
T ss_pred CCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECC
Confidence 8764111111111256788765 45666666655 99999987652 2333 34556788999999
Q ss_pred CCCEEEEEeCCC----cEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEe---CCCeEEEEeCCCC
Q 008496 409 TGSLLASCSDDV----TAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASAS---FDSTVKLWDVELG 481 (563)
Q Consensus 409 ~~~~las~s~dg----~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s---~dg~i~iwd~~~~ 481 (563)
||++|+.++.++ .|.+|+..++. ...+..+...+....| +++ . ++++.. .++.|.+||+.++
T Consensus 237 DG~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~~~~~~~~-~~g--------~-l~~~s~~~~~~~~l~~~d~~~~ 305 (695)
T 2bkl_A 237 DGKYLFVYILRGWSENDVYWKRPGEKD-FRLLVKGVGAKYEVHA-WKD--------R-FYVLTDEGAPRQRVFEVDPAKP 305 (695)
T ss_dssp TSCCEEEEEEETTTEEEEEEECTTCSS-CEEEEECSSCCEEEEE-ETT--------E-EEEEECTTCTTCEEEEEBTTBC
T ss_pred CCCEEEEEEeCCCCceEEEEEcCCCCc-eEEeecCCCceEEEEe-cCC--------c-EEEEECCCCCCCEEEEEeCCCC
Confidence 999988877665 66777655443 3344555555666666 443 2 344444 3589999999876
Q ss_pred eE--EEEecCC--CCCEEEEEEcCCCCEEEEEeCCCcEEEEecC-CCeeEEEEec--CCCEEEEEEcCCCCEEEEEECC-
Q 008496 482 KL--LYSLNGH--REPVYSLAFSPTGEYLASGSLDKSMHIWSLK-EGKIVKTYTG--NGGIFEVCWNKEGDKIAACFAN- 553 (563)
Q Consensus 482 ~~--~~~~~~h--~~~i~~l~~spdg~~lasgs~dg~v~iw~~~-~~~~~~~~~~--~~~i~~l~w~~~g~~la~~~~~- 553 (563)
.. ...+..+ ...|..++|+ ++.+++++..|+..+||.+. +++.++.+.. .+.+..++|+|+|+.|++.+.+
T Consensus 306 ~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~ 384 (695)
T 2bkl_A 306 ARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSF 384 (695)
T ss_dssp SGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEET
T ss_pred CccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCC
Confidence 52 1233323 4568889998 77888899999988888664 4665555543 4557788999999988876654
Q ss_pred ---CeEEEEEe
Q 008496 554 ---HTVCVLDF 561 (563)
Q Consensus 554 ---~~v~v~~~ 561 (563)
+++.+||+
T Consensus 385 ~~P~~v~~~d~ 395 (695)
T 2bkl_A 385 TTPRQIYKTSV 395 (695)
T ss_dssp TEEEEEEEEET
T ss_pred CCCCEEEEEEC
Confidence 46777775
No 196
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.60 E-value=9.9e-13 Score=127.89 Aligned_cols=239 Identities=9% Similarity=0.105 Sum_probs=163.2
Q ss_pred CCeEEEEECCCCCEEEE-------EeCCCeEEEEEcCCceeEeecc-----CCCCEEEEEeCCC-CCEEEEeeCCCcEEE
Q 008496 275 KDVTTLDWNGEGTLLAT-------GSYDGQARIWSTNGDLKCTLSK-----HKGPIFSLKWNKK-GDYLLTGSCDKTAIV 341 (563)
Q Consensus 275 ~~V~~l~~s~~g~~l~s-------g~~dg~i~vw~~~~~~~~~~~~-----h~~~V~~l~~~~~-~~~l~s~s~D~~v~i 341 (563)
....+++|+++|.++++ +..++.|.+|+........+.. +...+.++.++++ |+.+++ +..+.|.+
T Consensus 18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~-~~~~~l~~ 96 (314)
T 1pjx_A 18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVA-DMRLGLLV 96 (314)
T ss_dssp TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEE-ETTTEEEE
T ss_pred CCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEE-ECCCCEEE
Confidence 34678999999998888 6778999999964333333322 5567899999999 654444 44457888
Q ss_pred EECCCCceeEE-eeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCC-
Q 008496 342 WDVKTEEWKQQ-FEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDD- 419 (563)
Q Consensus 342 wd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~d- 419 (563)
||.. ++.... .... . ......+.+++++++|+++++...+
T Consensus 97 ~d~~-g~~~~~~~~~~------------------------------~-------~~~~~~~~~i~~d~~g~l~v~~~~~~ 138 (314)
T 1pjx_A 97 VQTD-GTFEEIAKKDS------------------------------E-------GRRMQGCNDCAFDYEGNLWITAPAGE 138 (314)
T ss_dssp EETT-SCEEECCSBCT------------------------------T-------SCBCBCCCEEEECTTSCEEEEECBCB
T ss_pred EeCC-CCEEEEEeccC------------------------------C-------CccccCCcCEEECCCCCEEEEecCcc
Confidence 9877 543211 0000 0 0012347789999999988777655
Q ss_pred --------------CcEEEEeCCCCceeeeecccCCCEEEEEEc----cCCCCCCCCCCcEEEEEEeCCCeEEEEeCC-C
Q 008496 420 --------------VTAKIWNMKQDKYVHDLREHSKEIYTIRWS----PTGSGTNNPNQQLILASASFDSTVKLWDVE-L 480 (563)
Q Consensus 420 --------------g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~----p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~-~ 480 (563)
+.|..|+.. ++.. .+..+......++|+ |++. .++++...++.|.+||+. .
T Consensus 139 ~~~~~~~~~~~~~~~~l~~~~~~-g~~~-~~~~~~~~~~~i~~~~~~d~dg~--------~l~v~~~~~~~i~~~~~~~~ 208 (314)
T 1pjx_A 139 VAPADYTRSMQEKFGSIYCFTTD-GQMI-QVDTAFQFPNGIAVRHMNDGRPY--------QLIVAETPTKKLWSYDIKGP 208 (314)
T ss_dssp CTTSCCCBTTSSSCEEEEEECTT-SCEE-EEEEEESSEEEEEEEECTTSCEE--------EEEEEETTTTEEEEEEEEET
T ss_pred cccccccccccCCCCeEEEECCC-CCEE-EeccCCCCcceEEEecccCCCCC--------EEEEEECCCCeEEEEECCCC
Confidence 566667655 4332 222333456788898 7653 345566678999999976 4
Q ss_pred Ce-----EEEEecCCC-CCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEecC-CCEEEEEEcCCCCEEEEE-EC
Q 008496 481 GK-----LLYSLNGHR-EPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN-GGIFEVCWNKEGDKIAAC-FA 552 (563)
Q Consensus 481 ~~-----~~~~~~~h~-~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~-~~i~~l~w~~~g~~la~~-~~ 552 (563)
++ ....+..+. ..+..++++++|+++++...++.|.+|+..+++.+..+... ..+.+++++++|+.|.++ ..
T Consensus 209 g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~ 288 (314)
T 1pjx_A 209 AKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHE 288 (314)
T ss_dssp TEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETT
T ss_pred CccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCC
Confidence 54 233344443 55789999999999988888899999999877776666544 568999999999966655 44
Q ss_pred CCeEEEEEee
Q 008496 553 NHTVCVLDFR 562 (563)
Q Consensus 553 ~~~v~v~~~~ 562 (563)
++.|.+|++.
T Consensus 289 ~~~l~~~~~~ 298 (314)
T 1pjx_A 289 NNAVWKFEWQ 298 (314)
T ss_dssp TTEEEEEECS
T ss_pred CCeEEEEeCC
Confidence 5788888753
No 197
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.60 E-value=2.5e-13 Score=148.59 Aligned_cols=236 Identities=15% Similarity=0.109 Sum_probs=156.7
Q ss_pred CCCCEEEEEeCCCCCEEEEeeCC-----CcEEEEECCCCceeEEeeecccCeEEEecCCCceEEEEeCCC----------
Q 008496 314 HKGPIFSLKWNKKGDYLLTGSCD-----KTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDN---------- 378 (563)
Q Consensus 314 h~~~V~~l~~~~~~~~l~s~s~D-----~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~---------- 378 (563)
|...+.+++|||+|++|+.++.+ .+|++||+.+++.... .........+.|.++..|+.++.+.
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~~~~~~~~~~~wspD~~l~~~~~~~~~~~~~~~~~ 239 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-ELKWVKFSGLAWLGNDALLYSRFAEPKEGQAFQAL 239 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE-EEEEEESCCCEESTTSEEEEEECCCC--------C
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc-cCCCceeccEEEECCCEEEEEEecCcccccccccC
Confidence 33468899999999999876654 4699999999987553 1111122467787665566655443
Q ss_pred ----eEEEEEcCCCcc--eeeecC--CCcceeEEEECCCCCEEEEEeCCC-----cEEEEeCCCC--ceeeeecccCCCE
Q 008496 379 ----MIYVCKIGENRP--IKTFAG--HQGEVNCVKWDPTGSLLASCSDDV-----TAKIWNMKQD--KYVHDLREHSKEI 443 (563)
Q Consensus 379 ----~i~~~~~~~~~~--~~~~~~--h~~~i~~~~~~~~~~~las~s~dg-----~i~iwd~~~~--~~~~~~~~~~~~i 443 (563)
.|++|++++... ...+.. +...+..+.|+|||++|+..+.++ .|.+||+.++ .....+..+...+
T Consensus 240 ~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~ 319 (741)
T 1yr2_A 240 NYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQ 319 (741)
T ss_dssp CCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSC
T ss_pred CCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCce
Confidence 388999877652 233333 334588999999999988777544 7999998776 3134455555445
Q ss_pred EEEEEccCCCCCCCCCCcEEEEEEeC----CCeEEEEeCCCC--eEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q 008496 444 YTIRWSPTGSGTNNPNQQLILASASF----DSTVKLWDVELG--KLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHI 517 (563)
Q Consensus 444 ~~~~~~p~~~~~~~~~~~~~l~s~s~----dg~i~iwd~~~~--~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~i 517 (563)
....+ |++. .|+..+. ++.|.+||+.++ .....+..+...+..++|+ ++.++++...|+..+|
T Consensus 320 ~~~~~-~dg~---------~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l 388 (741)
T 1yr2_A 320 WDFVD-GVGD---------QLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQV 388 (741)
T ss_dssp EEEEE-EETT---------EEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEE
T ss_pred EEEEe-ccCC---------EEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEE
Confidence 55433 6654 2333333 456999999874 3333344455556778887 6677888889998777
Q ss_pred EecC-CCeeEEEEe--cCCCEEEEEEcCCCCEEEEEECC----CeEEEEEe
Q 008496 518 WSLK-EGKIVKTYT--GNGGIFEVCWNKEGDKIAACFAN----HTVCVLDF 561 (563)
Q Consensus 518 w~~~-~~~~~~~~~--~~~~i~~l~w~~~g~~la~~~~~----~~v~v~~~ 561 (563)
|.+. +++.++.+. ..+.+..++|+|+|+.|++.+.+ +++.+||+
T Consensus 389 ~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~ 439 (741)
T 1yr2_A 389 LAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDP 439 (741)
T ss_dssp EEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEET
T ss_pred EEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEEC
Confidence 7654 466666655 34568899999999988866553 46777765
No 198
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.56 E-value=1.6e-12 Score=127.59 Aligned_cols=253 Identities=9% Similarity=-0.011 Sum_probs=171.6
Q ss_pred CCCeEEEEEcCCc-eeEeec------cCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEec-
Q 008496 294 YDGQARIWSTNGD-LKCTLS------KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW- 365 (563)
Q Consensus 294 ~dg~i~vw~~~~~-~~~~~~------~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~- 365 (563)
.++.|.++|.... ....+. ........+.+. .++..++...+++|.+||..+++.+..+.. ......+.+
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~-~~~p~~i~~~ 92 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITG-FTSPRYIHFL 92 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEEC-CSSEEEEEEE
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCC-CCCCcEEEEe
Confidence 4789999998743 332221 122345677764 344555566679999999999998887743 334555666
Q ss_pred CCCceEEEEeCCCeEEEEEcCCCcceeeecCCC-----cceeEEEECCCCCEEEEEe-CCCcEEEEeCCCCceeeeeccc
Q 008496 366 RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQ-----GEVNCVKWDPTGSLLASCS-DDVTAKIWNMKQDKYVHDLREH 439 (563)
Q Consensus 366 ~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~-----~~i~~~~~~~~~~~las~s-~dg~i~iwd~~~~~~~~~~~~~ 439 (563)
.+...+++...++.|.+++..+.+....+.... .....+++ .+++++++.. .++.|.+||..+++.+..+...
T Consensus 93 ~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g 171 (328)
T 3dsm_A 93 SDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELTIG 171 (328)
T ss_dssp ETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEECS
T ss_pred CCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC
Confidence 444445555578999999998887666554322 14556777 4555555554 4889999999998877766543
Q ss_pred CCCEEEEEEccCCCCCCCCCCcEEEEEEeCC----------CeEEEEeCCCCeEEEEecCC-CCCEEEEEEcCCCCEEEE
Q 008496 440 SKEIYTIRWSPTGSGTNNPNQQLILASASFD----------STVKLWDVELGKLLYSLNGH-REPVYSLAFSPTGEYLAS 508 (563)
Q Consensus 440 ~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~d----------g~i~iwd~~~~~~~~~~~~h-~~~i~~l~~spdg~~las 508 (563)
. ....+.++|+|. +++++..+ +.|.++|..+++....+... ......++|+||+++|.+
T Consensus 172 ~-~p~~i~~~~dG~---------l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv 241 (328)
T 3dsm_A 172 I-QPTSLVMDKYNK---------MWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYW 241 (328)
T ss_dssp S-CBCCCEECTTSE---------EEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEE
T ss_pred C-CccceEEcCCCC---------EEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEE
Confidence 2 335667777653 44444443 78999999999887666432 235789999999998887
Q ss_pred EeCCCcEEEEecCCCeeEEE--Eec-CCCEEEEEEcCC-CCEEEEE----ECCCeEEEEEe
Q 008496 509 GSLDKSMHIWSLKEGKIVKT--YTG-NGGIFEVCWNKE-GDKIAAC----FANHTVCVLDF 561 (563)
Q Consensus 509 gs~dg~v~iw~~~~~~~~~~--~~~-~~~i~~l~w~~~-g~~la~~----~~~~~v~v~~~ 561 (563)
+.. .|.+||..++++... ... ......++++|+ |...++. ..++.|.+||.
T Consensus 242 ~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~ 300 (328)
T 3dsm_A 242 INN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSP 300 (328)
T ss_dssp ESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECT
T ss_pred Ecc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECC
Confidence 665 899999998876421 111 345789999995 5555555 56788999875
No 199
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.56 E-value=1e-11 Score=130.08 Aligned_cols=267 Identities=13% Similarity=0.110 Sum_probs=189.4
Q ss_pred CCCCEEEEEeCCCeEEEEEcCC-ceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECC--CCceeEEeeecccCe
Q 008496 284 GEGTLLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVK--TEEWKQQFEFHSGPT 360 (563)
Q Consensus 284 ~~g~~l~sg~~dg~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~--~~~~~~~~~~~~~~~ 360 (563)
+.+.++++...++.|.++|... +...++.. ...+..+.|+|+|+++++++.|+.|.+||+. +.+.+..+..... .
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~-P 242 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSE-A 242 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSE-E
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCC-C
Confidence 3456777778889999999864 45555543 3356789999999999999999999999996 7777766654333 3
Q ss_pred EEEecC-----CC-ceEEEEeCCCeEEEEEcCCCcceeeecC----------CCc-ceeEEEECCCCCE-EEEEeCCCcE
Q 008496 361 LDVDWR-----NN-VSFATSSTDNMIYVCKIGENRPIKTFAG----------HQG-EVNCVKWDPTGSL-LASCSDDVTA 422 (563)
Q Consensus 361 ~~~~~~-----~~-~~~~~~~~d~~i~~~~~~~~~~~~~~~~----------h~~-~i~~~~~~~~~~~-las~s~dg~i 422 (563)
..+.+. +. ..+++...++.+.++|..+.+++..+.. |.. .+..+..++++.. +++...+|.|
T Consensus 243 ~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v 322 (567)
T 1qks_A 243 RSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKI 322 (567)
T ss_dssp EEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEE
T ss_pred ceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeE
Confidence 445554 33 4556667789999999988888776542 112 5778888888665 4556678999
Q ss_pred EEEeCCCCcee--eeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecC-----CCCCEE
Q 008496 423 KIWNMKQDKYV--HDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG-----HREPVY 495 (563)
Q Consensus 423 ~iwd~~~~~~~--~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-----h~~~i~ 495 (563)
.++|....... ..+ ........+.|+|+++ .+++++..++.|.++|+.+++.+..+.- |.+.-.
T Consensus 323 ~~vd~~~~~~~~v~~i-~~~~~~~d~~~~pdgr--------~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~ 393 (567)
T 1qks_A 323 LLVDYTDLNNLKTTEI-SAERFLHDGGLDGSHR--------YFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGA 393 (567)
T ss_dssp EEEETTCSSEEEEEEE-ECCSSEEEEEECTTSC--------EEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCE
T ss_pred EEEecCCCccceeeee-eccccccCceECCCCC--------EEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccce
Confidence 99998765322 122 2334566788999875 4566666789999999999998766543 322111
Q ss_pred EEEEcCCC-CEEEEEe-CCCcEEEEecCC-------CeeEEEEecCC-CEEEEEEcCCCCEEEEEEC-------CCeEEE
Q 008496 496 SLAFSPTG-EYLASGS-LDKSMHIWSLKE-------GKIVKTYTGNG-GIFEVCWNKEGDKIAACFA-------NHTVCV 558 (563)
Q Consensus 496 ~l~~spdg-~~lasgs-~dg~v~iw~~~~-------~~~~~~~~~~~-~i~~l~w~~~g~~la~~~~-------~~~v~v 558 (563)
.+ ++|++ ..++++. .++.|.+++..+ .+.+++....+ +-..+..+|+|++|.+... ..+|.|
T Consensus 394 ~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v 472 (567)
T 1qks_A 394 NF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAV 472 (567)
T ss_dssp EE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEE
T ss_pred ee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEE
Confidence 22 68884 5555554 468999999988 67888887643 3356788999999998763 348999
Q ss_pred EEee
Q 008496 559 LDFR 562 (563)
Q Consensus 559 ~~~~ 562 (563)
||+.
T Consensus 473 ~d~~ 476 (567)
T 1qks_A 473 FDIK 476 (567)
T ss_dssp EEGG
T ss_pred EECC
Confidence 9874
No 200
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.56 E-value=5.1e-11 Score=114.68 Aligned_cols=276 Identities=11% Similarity=0.028 Sum_probs=186.7
Q ss_pred CCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEe
Q 008496 214 HTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS 293 (563)
Q Consensus 214 h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~ 293 (563)
....+.++++.++|.++++...++.|.+|+.. +... ... . ......+..+++.++|.++++..
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~-----------~~~-~----~~~~~~~~~i~~~~~g~l~v~~~ 80 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIK-----------EFE-V----PTPDAKVMCLIVSSLGDIWFTEN 80 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-----------EEE-C----SSTTCCEEEEEECTTSCEEEEET
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceE-----------EEE-C----CCCCCcceeEEECCCCCEEEEec
Confidence 34567899999999988887788999999865 3210 000 0 11235688999999999888877
Q ss_pred CCCeEEEEEcCCceeE-eeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEE-eeecccCeEEEecCC-Cce
Q 008496 294 YDGQARIWSTNGDLKC-TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQ-FEFHSGPTLDVDWRN-NVS 370 (563)
Q Consensus 294 ~dg~i~vw~~~~~~~~-~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~-~~~~~~~~~~~~~~~-~~~ 370 (563)
.++.|..|+..+.... .+......+.++++.++|+.+++...++.|..||.. ++.... +......+..+.... ...
T Consensus 81 ~~~~v~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l 159 (300)
T 2qc5_A 81 GANKIGKLSKKGGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNAL 159 (300)
T ss_dssp TTTEEEEECTTSCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSE
T ss_pred CCCeEEEECCCCCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCE
Confidence 7899999998865532 222244678999999999988887778899999987 554422 111223455555543 334
Q ss_pred EEEEeCCCeEEEEEcCCCccee-eecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceee-eecccCCCEEEEEE
Q 008496 371 FATSSTDNMIYVCKIGENRPIK-TFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVH-DLREHSKEIYTIRW 448 (563)
Q Consensus 371 ~~~~~~d~~i~~~~~~~~~~~~-~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~-~~~~~~~~i~~~~~ 448 (563)
+++...++.|+.++. ...... ....+...+.+++++++|.+.++....+.|.+|+. ++.... .+..+...+.++++
T Consensus 160 ~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~ 237 (300)
T 2qc5_A 160 WFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITA 237 (300)
T ss_dssp EEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEE
T ss_pred EEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEE
Confidence 555555778888887 333222 22234456889999999998887777788999998 444332 23334566888999
Q ss_pred ccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEE-EEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 008496 449 SPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLL-YSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLK 521 (563)
Q Consensus 449 ~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~-~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~ 521 (563)
.+++. +.++...++.|..||.. ++.. +.+......+.+++++++|.++++.. . .|..++..
T Consensus 238 d~~g~---------l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p~ 299 (300)
T 2qc5_A 238 GKNSE---------IWFTEWGANQIGRITND-NTIQEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNLN 299 (300)
T ss_dssp CSTTC---------EEEEETTTTEEEEECTT-SCEEEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEEC
T ss_pred CCCCC---------EEEeccCCCeEEEECCC-CcEEEEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCCC
Confidence 88764 45555567899999984 5433 33443445678999999998776655 4 67777653
No 201
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.56 E-value=3.3e-11 Score=115.98 Aligned_cols=233 Identities=8% Similarity=0.050 Sum_probs=169.1
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEEcCCceeEe-eccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEe
Q 008496 275 KDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCT-LSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF 353 (563)
Q Consensus 275 ~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~-~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~ 353 (563)
..+.+++++++|+++++...++.|.+|+..+..... +..+...+.++++.++|..+++...++.|..||.. +.. ..+
T Consensus 15 ~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-~~~ 92 (299)
T 2z2n_A 15 TGPYGITVSDKGKVWITQHKANMISCINLDGKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GII-KEY 92 (299)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEE
T ss_pred CCccceEECCCCCEEEEecCCCcEEEEcCCCCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcE-EEE
Confidence 568999999999988877778999999988544332 22345678999999999988887778889999865 221 111
Q ss_pred eecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCcee
Q 008496 354 EFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYV 433 (563)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~ 433 (563)
.+ ......+.++++++++.++++...++.|.+||. ++...
T Consensus 93 ------------------------------~~---------~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~ 132 (299)
T 2z2n_A 93 ------------------------------TL---------PNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIR 132 (299)
T ss_dssp ------------------------------EC---------SSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEE
T ss_pred ------------------------------eC---------CCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEE
Confidence 00 112335678999999998888877889999998 44433
Q ss_pred e-eecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEE-ecCCCCCEEEEEEcCCCCEEEEEeC
Q 008496 434 H-DLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYS-LNGHREPVYSLAFSPTGEYLASGSL 511 (563)
Q Consensus 434 ~-~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~-~~~h~~~i~~l~~spdg~~lasgs~ 511 (563)
. .+..+...+..+++.+++. +.++...++.|..||. +++.... +......+.+++++++|.++++...
T Consensus 133 ~~~~~~~~~~~~~i~~~~~g~---------l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~ 202 (299)
T 2z2n_A 133 EYELPNKGSYPSFITLGSDNA---------LWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEII 202 (299)
T ss_dssp EEECSSTTCCEEEEEECTTSC---------EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETT
T ss_pred EecCCCCCCCCceEEEcCCCC---------EEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccC
Confidence 2 2223445688899988764 5555666789999999 6665432 3334456889999999998887777
Q ss_pred CCcEEEEecCCCeeEEEEec---CCCEEEEEEcCCCCEEEEEECCCeEEEEEe
Q 008496 512 DKSMHIWSLKEGKIVKTYTG---NGGIFEVCWNKEGDKIAACFANHTVCVLDF 561 (563)
Q Consensus 512 dg~v~iw~~~~~~~~~~~~~---~~~i~~l~w~~~g~~la~~~~~~~v~v~~~ 561 (563)
++.|.+|+. +++... +.. ...+..++++++|+..++...++.|.+||.
T Consensus 203 ~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~ 253 (299)
T 2z2n_A 203 GNKIGRITT-SGEITE-FKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS 253 (299)
T ss_dssp TTEEEEECT-TCCEEE-EECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET
T ss_pred CceEEEECC-CCcEEE-EECCCCCCCceeEEECCCCCEEEeccCCceEEEECC
Confidence 889999999 776543 322 356889999999997777667788888874
No 202
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.55 E-value=3.1e-11 Score=120.18 Aligned_cols=238 Identities=8% Similarity=-0.079 Sum_probs=154.7
Q ss_pred EEEECCCCCEEEEEe----------CCCeEEEEEcCC-ceeEeeccC-------CCCEEEEEeCCCCCEEEEeeC--CCc
Q 008496 279 TLDWNGEGTLLATGS----------YDGQARIWSTNG-DLKCTLSKH-------KGPIFSLKWNKKGDYLLTGSC--DKT 338 (563)
Q Consensus 279 ~l~~s~~g~~l~sg~----------~dg~i~vw~~~~-~~~~~~~~h-------~~~V~~l~~~~~~~~l~s~s~--D~~ 338 (563)
.++++|||++++++. .++.|.+||... .....+.-- ......+.|+|+|++|+.++. +++
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~ 149 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA 149 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe
Confidence 789999999999886 367899999853 333333211 122357899999999998874 578
Q ss_pred EEEEECCCCceeEE-eeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeec-----CCCcc-eeEEEECCCCC
Q 008496 339 AIVWDVKTEEWKQQ-FEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFA-----GHQGE-VNCVKWDPTGS 411 (563)
Q Consensus 339 v~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~-----~h~~~-i~~~~~~~~~~ 411 (563)
|.++| .+++.... +.... .+. +.......|++.+.|+.+.+++. ..+.+.... ..... .....+.+++.
T Consensus 150 v~viD-~t~~~~~~~i~~~~-~~~-~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 225 (373)
T 2mad_H 150 VGLVV-QGGSSDDQLLSSPT-CYH-IHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSG 225 (373)
T ss_pred EEEEE-CCCCEEeEEcCCCc-eEE-EEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCC
Confidence 99999 99988776 54322 122 22223346677778899988888 665542211 11111 12345566655
Q ss_pred EEEEEeCCCcEEEEeCCCCc--eeeeecccCC----------CEEEEEEccCCCCCCCCCCcEEEEEEe---------CC
Q 008496 412 LLASCSDDVTAKIWNMKQDK--YVHDLREHSK----------EIYTIRWSPTGSGTNNPNQQLILASAS---------FD 470 (563)
Q Consensus 412 ~las~s~dg~i~iwd~~~~~--~~~~~~~~~~----------~i~~~~~~p~~~~~~~~~~~~~l~s~s---------~d 470 (563)
.++..+..+.+.+.|+.+.. .+..+..... ....+.++|++. .+.++.. ..
T Consensus 226 ~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~--------~lyV~~~~~~~~~~~~~~ 297 (373)
T 2mad_H 226 RIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSD--------GIYLLTSEQSAWKLHAAA 297 (373)
T ss_pred EEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCC--------EEEEEeccCCcccccCCC
Confidence 54444577889999986543 2222211111 122244455442 3333332 24
Q ss_pred CeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCC-EEEEEe-CCCcEEEEecCCCeeEEEE
Q 008496 471 STVKLWDVELGKLLYSLNGHREPVYSLAFSPTGE-YLASGS-LDKSMHIWSLKEGKIVKTY 529 (563)
Q Consensus 471 g~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~-~lasgs-~dg~v~iw~~~~~~~~~~~ 529 (563)
+.|.++|+.+++.+.++.. .....+++|+|||+ .++++. .++.|.+||+.+++++++.
T Consensus 298 ~~V~VID~~t~~vv~~i~~-g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 298 KEVTSVTGLVGQTSSQISL-GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred CeEEEEECCCCEEEEEEEC-CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence 6899999999999888853 33578999999999 777777 5899999999999999884
No 203
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.54 E-value=9.2e-12 Score=120.99 Aligned_cols=245 Identities=9% Similarity=0.068 Sum_probs=159.2
Q ss_pred cCCCCceEEEEECCCCCEEEE-------eeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECC
Q 008496 212 EGHTSEVCACAWSPAGSLLAS-------GSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG 284 (563)
Q Consensus 212 ~~h~~~V~~~~~sp~~~~lat-------gs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~ 284 (563)
........+++|++++.++++ +..++.|.+|+..++... .+.. .........+..+++++
T Consensus 14 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~-----------~~~~--~~~~~~~~~~~~i~~~~ 80 (314)
T 1pjx_A 14 TEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKT-----------VICK--PEVNGYGGIPAGCQCDR 80 (314)
T ss_dssp ECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEE-----------EEEC--CEETTEECCEEEEEECS
T ss_pred hccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEE-----------EEEe--cccCCCCCCCceEEEec
Confidence 334455689999999998888 678899999997654321 0100 00001124588999999
Q ss_pred C-CCEEEEEeCCCeEEEEEcCCceeEe-ecc----CCCCEEEEEeCCCCCEEEEeeCC---------------CcEEEEE
Q 008496 285 E-GTLLATGSYDGQARIWSTNGDLKCT-LSK----HKGPIFSLKWNKKGDYLLTGSCD---------------KTAIVWD 343 (563)
Q Consensus 285 ~-g~~l~sg~~dg~i~vw~~~~~~~~~-~~~----h~~~V~~l~~~~~~~~l~s~s~D---------------~~v~iwd 343 (563)
+ |+++++.. .+.|.+|+.++..... ... ....+.+++++++|+.+++...+ +.|..||
T Consensus 81 ~~g~l~v~~~-~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~ 159 (314)
T 1pjx_A 81 DANQLFVADM-RLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFT 159 (314)
T ss_dssp SSSEEEEEET-TTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEEC
T ss_pred CCCcEEEEEC-CCCEEEEeCCCCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEEC
Confidence 9 76555544 4478899988554332 211 12347899999999877776554 2344443
Q ss_pred CCCCceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEEC----CCCCEE-EEEeC
Q 008496 344 VKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWD----PTGSLL-ASCSD 418 (563)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~----~~~~~l-as~s~ 418 (563)
.. ++.. .+..+......++|+ |+++.| ++.+.
T Consensus 160 ~~-g~~~------------------------------------------~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~ 196 (314)
T 1pjx_A 160 TD-GQMI------------------------------------------QVDTAFQFPNGIAVRHMNDGRPYQLIVAETP 196 (314)
T ss_dssp TT-SCEE------------------------------------------EEEEEESSEEEEEEEECTTSCEEEEEEEETT
T ss_pred CC-CCEE------------------------------------------EeccCCCCcceEEEecccCCCCCEEEEEECC
Confidence 32 2111 111112235678899 998654 55566
Q ss_pred CCcEEEEeCC-CCc-----eeeeecccC-CCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCC
Q 008496 419 DVTAKIWNMK-QDK-----YVHDLREHS-KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHR 491 (563)
Q Consensus 419 dg~i~iwd~~-~~~-----~~~~~~~~~-~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~ 491 (563)
++.|.+|+.. .+. ....+..+. .....++++++|. ++++...++.|.+||..+++.+..+..+.
T Consensus 197 ~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~---------l~v~~~~~~~i~~~d~~~g~~~~~~~~~~ 267 (314)
T 1pjx_A 197 TKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNN---------LLVANWGSSHIEVFGPDGGQPKMRIRCPF 267 (314)
T ss_dssp TTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCC---------EEEEEETTTEEEEECTTCBSCSEEEECSS
T ss_pred CCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCC---------EEEEEcCCCEEEEEcCCCCcEeEEEeCCC
Confidence 8899999976 333 222333333 5577889988774 56666678899999998777666666666
Q ss_pred CCEEEEEEcCCCCEEE-EEeCCCcEEEEecCC
Q 008496 492 EPVYSLAFSPTGEYLA-SGSLDKSMHIWSLKE 522 (563)
Q Consensus 492 ~~i~~l~~spdg~~la-sgs~dg~v~iw~~~~ 522 (563)
..+.+++|+|+|++|. +...++.|..|++..
T Consensus 268 ~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 268 EKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp SCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred CCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 7799999999999554 455568899999864
No 204
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.54 E-value=3.5e-12 Score=125.42 Aligned_cols=291 Identities=12% Similarity=0.083 Sum_probs=187.1
Q ss_pred ECCCCCEEEEeeC-----CCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEe----
Q 008496 223 WSPAGSLLASGSG-----DSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS---- 293 (563)
Q Consensus 223 ~sp~~~~latgs~-----D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~---- 293 (563)
..|+++.++.... ++.+.+.|..+.+. +..+.. ...+ . ++++|||++++++.
T Consensus 40 ~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v-------------~~~I~v----G~~P-~-va~spDG~~lyVan~~~~ 100 (386)
T 3sjl_D 40 PAPDARRVYVNDPAHFAAVTQQFVIDGEAGRV-------------IGMIDG----GFLP-N-PVVADDGSFIAHASTVFS 100 (386)
T ss_dssp CCCCTTEEEEEECGGGCSSEEEEEEETTTTEE-------------EEEEEE----CSSC-E-EEECTTSSCEEEEEEEEE
T ss_pred cCCCCCEEEEEcCcccCCCCEEEEEECCCCeE-------------EEEEEC----CCCC-c-EEECCCCCEEEEEccccc
Confidence 3577776665543 67888998765432 111111 1122 3 89999999887775
Q ss_pred ------CCCeEEEEEcCC-ceeEeeccC-------CCCEEEEEeCCCCCEEEEeeC--CCcEEEEECCCCceeEEeeecc
Q 008496 294 ------YDGQARIWSTNG-DLKCTLSKH-------KGPIFSLKWNKKGDYLLTGSC--DKTAIVWDVKTEEWKQQFEFHS 357 (563)
Q Consensus 294 ------~dg~i~vw~~~~-~~~~~~~~h-------~~~V~~l~~~~~~~~l~s~s~--D~~v~iwd~~~~~~~~~~~~~~ 357 (563)
.++.|.+||... .....+.-. ......+.|+|+|++++.+.. +++|.++|+.+++.+..+....
T Consensus 101 r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g 180 (386)
T 3sjl_D 101 RIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD 180 (386)
T ss_dssp ETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS
T ss_pred ccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC
Confidence 367899999764 334443211 113356899999999988764 6899999999999888775422
Q ss_pred cCeEEEecCCCceEEEEeCCCeEEEEEcCC-CcceeeecCC----Ccce-eEEEE-CCCCCEEEEEeCCCcEEEEeCCCC
Q 008496 358 GPTLDVDWRNNVSFATSSTDNMIYVCKIGE-NRPIKTFAGH----QGEV-NCVKW-DPTGSLLASCSDDVTAKIWNMKQD 430 (563)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~-~~~~~~~~~h----~~~i-~~~~~-~~~~~~las~s~dg~i~iwd~~~~ 430 (563)
. ..+.......|++.+.||.+.+.++.. ++.+.....+ ...+ ....| .++|++++ .+.+|.+.+.|+.+.
T Consensus 181 ~--~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~ 257 (386)
T 3sjl_D 181 C--YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSG 257 (386)
T ss_dssp E--EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTS
T ss_pred c--ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCC
Confidence 1 112223445677778899988888876 4432221111 1122 22455 36776554 566899999998765
Q ss_pred ce--eeeec--c--------cCCCEEEEEEccCCCCCCCCCCcEEEEEEeC--------CCeEEEEeCCCCeEEEEecCC
Q 008496 431 KY--VHDLR--E--------HSKEIYTIRWSPTGSGTNNPNQQLILASASF--------DSTVKLWDVELGKLLYSLNGH 490 (563)
Q Consensus 431 ~~--~~~~~--~--------~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~--------dg~i~iwd~~~~~~~~~~~~h 490 (563)
.. +..+. . .......++++|++. .++++.... .+.|.+.|+.+++.+..+.-
T Consensus 258 ~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~-------~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~v- 329 (386)
T 3sjl_D 258 DAKFLPAVEALTEAERADGWRPGGWQQVAYHRALD-------RIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM- 329 (386)
T ss_dssp SCEECCCEESSCHHHHHTTEEECSSSCEEEETTTT-------EEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-
T ss_pred cceeecceeccccccccccccCCCcceeeECCCCC-------eEEEEeccccccccCCCCCEEEEEECCCCeEEEEEEC-
Confidence 42 22211 0 011112234445442 334433311 25799999999999887753
Q ss_pred CCCEEEEEEcCCCC-EEEEE-eCCCcEEEEecCCCeeEEEEecCCCEEEEEEcCC
Q 008496 491 REPVYSLAFSPTGE-YLASG-SLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKE 543 (563)
Q Consensus 491 ~~~i~~l~~spdg~-~lasg-s~dg~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~ 543 (563)
..++++|+|+||++ +|++. ..++.|.++|..++++++++...+....|.+++|
T Consensus 330 g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~~~p~~l~~s~d 384 (386)
T 3sjl_D 330 GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTAD 384 (386)
T ss_dssp EEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEEEECC
T ss_pred CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCCCCCceeEECCc
Confidence 23678999999996 66654 4589999999999999999988777778888877
No 205
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.52 E-value=2e-11 Score=117.79 Aligned_cols=228 Identities=14% Similarity=0.206 Sum_probs=156.9
Q ss_pred eEEEEECCC-CCEEEEEeCCCeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeee
Q 008496 277 VTTLDWNGE-GTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEF 355 (563)
Q Consensus 277 V~~l~~s~~-g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~ 355 (563)
--+..|+++ +.++++...++.|..|+..+.....+ .+...+.+++++++|+++++ . ++.|.+||..+++......
T Consensus 15 ~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~-~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~~~~- 90 (297)
T 3g4e_A 15 GESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQRV-TMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAVVLAT- 90 (297)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEE-ECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEEEEEE-
T ss_pred ccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEEE-eCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEEEEEe-
Confidence 457789995 55667777789999999876544433 34567999999999995554 3 5689999988765322110
Q ss_pred cccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCC---------CcEEEEe
Q 008496 356 HSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDD---------VTAKIWN 426 (563)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~d---------g~i~iwd 426 (563)
..... ....++.++++|+|+++++.... ....||.
T Consensus 91 -----------------------------~~~~~-------~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~ 134 (297)
T 3g4e_A 91 -----------------------------VDNDK-------KNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYS 134 (297)
T ss_dssp -----------------------------CCTTC-------SSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEE
T ss_pred -----------------------------cCCCC-------CCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEE
Confidence 00000 12346788999999977654321 2345555
Q ss_pred CCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeC--CCCeE-----EEEecCCCCCEEEEEE
Q 008496 427 MKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDV--ELGKL-----LYSLNGHREPVYSLAF 499 (563)
Q Consensus 427 ~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~--~~~~~-----~~~~~~h~~~i~~l~~ 499 (563)
+.....+..+..+......++|+|++. .++++.+.++.|.+|++ .++.. ...+..+......+++
T Consensus 135 ~d~~g~~~~~~~~~~~pngi~~spdg~--------~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~ 206 (297)
T 3g4e_A 135 LFPDHHVKKYFDQVDISNGLDWSLDHK--------IFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCI 206 (297)
T ss_dssp ECTTSCEEEEEEEESBEEEEEECTTSC--------EEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEE
T ss_pred EECCCCEEEEeeccccccceEEcCCCC--------EEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEE
Confidence 543322222333334567899999875 35566777899999987 45543 2233333456789999
Q ss_pred cCCCCEEEEEeCCCcEEEEecCCCeeEEEEecC-CCEEEEEEc-CCCCEEEEEEC
Q 008496 500 SPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN-GGIFEVCWN-KEGDKIAACFA 552 (563)
Q Consensus 500 spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~-~~i~~l~w~-~~g~~la~~~~ 552 (563)
+++|++.++....+.|.+||..+|+++..+... ..+++++|. |+++.|.++..
T Consensus 207 d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 207 DAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp BTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred CCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEcC
Confidence 999998888888889999999999998888765 578999998 89998877654
No 206
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.51 E-value=2.3e-12 Score=140.98 Aligned_cols=238 Identities=13% Similarity=0.069 Sum_probs=157.9
Q ss_pred CeEEEEECCCCCEEEEEeCC-----CeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCc------------
Q 008496 276 DVTTLDWNGEGTLLATGSYD-----GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKT------------ 338 (563)
Q Consensus 276 ~V~~l~~s~~g~~l~sg~~d-----g~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~------------ 338 (563)
.+..++|||||++|+.++.+ ..|++||+.+........+...+..+.|+|+ +.|+.++.|+.
T Consensus 164 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~ 242 (741)
T 1yr2_A 164 ALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYN 242 (741)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC--------CCCC
T ss_pred EEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCceeccEEEECC-CEEEEEEecCcccccccccCCCC
Confidence 57889999999999987654 3699999876543332222222357899999 99988877654
Q ss_pred --EEEEECCCCce--eEEeeeccc--CeEEEecCCCce-EEEEeC-----CCeEEEEEcCCC--cceeeecCCCcceeEE
Q 008496 339 --AIVWDVKTEEW--KQQFEFHSG--PTLDVDWRNNVS-FATSST-----DNMIYVCKIGEN--RPIKTFAGHQGEVNCV 404 (563)
Q Consensus 339 --v~iwd~~~~~~--~~~~~~~~~--~~~~~~~~~~~~-~~~~~~-----d~~i~~~~~~~~--~~~~~~~~h~~~i~~~ 404 (563)
|++|++.++.. ...+..... .+..+.|..+.. ++..+. ...|+++++... .+...+..+...+...
T Consensus 243 ~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~ 322 (741)
T 1yr2_A 243 QTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDF 322 (741)
T ss_dssp CEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEE
T ss_pred CEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEE
Confidence 88999877653 222322222 356777876653 444332 347999998765 3144555555545444
Q ss_pred EECCCCCEEEEEeCC----CcEEEEeCCCC--ceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeC
Q 008496 405 KWDPTGSLLASCSDD----VTAKIWNMKQD--KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDV 478 (563)
Q Consensus 405 ~~~~~~~~las~s~d----g~i~iwd~~~~--~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~ 478 (563)
. +|+|+.|+..+++ +.|.+||+.+. .....+..+...+..+.|.. + .++++...|+..+||.+
T Consensus 323 ~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~~-~---------~lv~~~~~dg~~~l~~~ 391 (741)
T 1yr2_A 323 V-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIAG-N---------RLFASYIHDAKSQVLAF 391 (741)
T ss_dssp E-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEEB-T---------EEEEEEEETTEEEEEEE
T ss_pred E-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEEC-C---------EEEEEEEECCEEEEEEE
Confidence 3 4899988887764 45999998874 33333334444566677752 2 37888889998888755
Q ss_pred C-CCeEEEEecC-CCCCEEEEEEcCCCCEEEE-E---eCCCcEEEEecCCCee
Q 008496 479 E-LGKLLYSLNG-HREPVYSLAFSPTGEYLAS-G---SLDKSMHIWSLKEGKI 525 (563)
Q Consensus 479 ~-~~~~~~~~~~-h~~~i~~l~~spdg~~las-g---s~dg~v~iw~~~~~~~ 525 (563)
. .++.+..+.. +...|..++++|++..|+. . ...++|++||+.+++.
T Consensus 392 ~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 392 DLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT 444 (741)
T ss_dssp ETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred eCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 4 4666666654 3567889999999976652 2 2347899999988763
No 207
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.50 E-value=1.6e-10 Score=114.90 Aligned_cols=263 Identities=8% Similarity=-0.010 Sum_probs=170.1
Q ss_pred CCCCCEEEEEeC--CC---eEEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEEEEee----------CCCcEEEEECCC
Q 008496 283 NGEGTLLATGSY--DG---QARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGS----------CDKTAIVWDVKT 346 (563)
Q Consensus 283 s~~g~~l~sg~~--dg---~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s----------~D~~v~iwd~~~ 346 (563)
.|+++++.+... .. .|.++|.. ++....+..-..+ .+.++|+|++++.+. .+++|.+||+.+
T Consensus 29 ~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t 106 (373)
T 2mad_H 29 GADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVT 106 (373)
T ss_pred CCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCC
Confidence 356666666543 22 78999975 4555555544444 899999999998876 367899999998
Q ss_pred CceeEEeeec-------ccCeEEEecCCCc-eE-EEEeC-CCeEEEEEcCCCcceee-ecCCCcceeEEEECCCC-CEEE
Q 008496 347 EEWKQQFEFH-------SGPTLDVDWRNNV-SF-ATSST-DNMIYVCKIGENRPIKT-FAGHQGEVNCVKWDPTG-SLLA 414 (563)
Q Consensus 347 ~~~~~~~~~~-------~~~~~~~~~~~~~-~~-~~~~~-d~~i~~~~~~~~~~~~~-~~~h~~~i~~~~~~~~~-~~la 414 (563)
.+.+..+... ......+.|.++. .+ ++... ++.|.++| .+.+.+.. +... + |+.+.|++ +.++
T Consensus 107 ~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~-~---~~~~~~~~~~~~~ 181 (373)
T 2mad_H 107 FLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP-T---CYHIHPGAPSTFY 181 (373)
T ss_pred CcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC-c---eEEEEeCCCceEE
Confidence 8877766543 1122345555443 33 33333 57899999 88877766 5321 1 24455555 4566
Q ss_pred EEeCCCcEEEEeCCCCceeeeec-----ccCCCE-EEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe--EEEE
Q 008496 415 SCSDDVTAKIWNMKQDKYVHDLR-----EHSKEI-YTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK--LLYS 486 (563)
Q Consensus 415 s~s~dg~i~iwd~~~~~~~~~~~-----~~~~~i-~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~--~~~~ 486 (563)
+.+.||.+.++|. +++.+.... ....++ ....+.+++. . +++. +..+.|.+.|+..+. .+..
T Consensus 182 ~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-------~-~~~~-~~~~~v~vid~~~~~~~v~~~ 251 (373)
T 2mad_H 182 LLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSG-------R-IVWP-VYSGKILQADISAAGATNKAP 251 (373)
T ss_pred EEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCC-------E-EEEE-cCCceEEEEeccCCcceEeee
Confidence 7778999999999 776553221 111111 1123333321 1 2333 367889999987543 2222
Q ss_pred ecC----------CCCCEEEEEEcCCCCEEEEEeC----------CCcEEEEecCCCeeEEEEecCCCEEEEEEcCCCC-
Q 008496 487 LNG----------HREPVYSLAFSPTGEYLASGSL----------DKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGD- 545 (563)
Q Consensus 487 ~~~----------h~~~i~~l~~spdg~~lasgs~----------dg~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~g~- 545 (563)
+.- .......++|+||++.|.++.. .+.|.++|+.++++++++........++|+|||+
T Consensus 252 ~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~~ 331 (373)
T 2mad_H 252 IDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGP 331 (373)
T ss_pred eeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCCCcCeEEECCCCCe
Confidence 210 0122445789999987776543 3579999999999999998777789999999999
Q ss_pred EEEEEE-CCCeEEEEEee
Q 008496 546 KIAACF-ANHTVCVLDFR 562 (563)
Q Consensus 546 ~la~~~-~~~~v~v~~~~ 562 (563)
+|.++. .++.|.|||.+
T Consensus 332 ~l~v~~~~~~~V~ViD~~ 349 (373)
T 2mad_H 332 DLYALSAGTEVLHIYDAG 349 (373)
T ss_pred EEEEEcCCCCeEEEEECC
Confidence 677765 58899999975
No 208
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.46 E-value=1.2e-10 Score=114.00 Aligned_cols=225 Identities=11% Similarity=0.045 Sum_probs=151.4
Q ss_pred eEEEEECCC-CCEEEEEeCCCeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeee
Q 008496 277 VTTLDWNGE-GTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEF 355 (563)
Q Consensus 277 V~~l~~s~~-g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~ 355 (563)
.....|+|+ +.++++...++.|..|+..+.....+. +...+.++.|+++|+++++. . ..|.+||..+++......
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~-~~~~v~~i~~~~dg~l~v~~-~-~gl~~~d~~~g~~~~~~~- 126 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKTVHA-LPFMGSALAKISDSKQLIAS-D-DGLFLRDTATGVLTLHAE- 126 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEE-CSSCEEEEEEEETTEEEEEE-T-TEEEEEETTTCCEEEEEC-
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEEE-CCCcceEEEEeCCCeEEEEE-C-CCEEEEECCCCcEEEEee-
Confidence 456789997 456667777899999998765544433 35679999999999877654 3 458889987765322100
Q ss_pred cccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeC------CCcEEEEeCCC
Q 008496 356 HSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD------DVTAKIWNMKQ 429 (563)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~------dg~i~iwd~~~ 429 (563)
.... .....++.++++|+|+++++... .+.|..++ +
T Consensus 127 -----------------------------~~~~-------~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~ 168 (326)
T 2ghs_A 127 -----------------------------LESD-------LPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--K 168 (326)
T ss_dssp -----------------------------SSTT-------CTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--T
T ss_pred -----------------------------CCCC-------CCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--C
Confidence 0000 01235778999999998776542 23454455 3
Q ss_pred CceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCC--CC-e-----EEEEecCCCCCEEEEEEcC
Q 008496 430 DKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE--LG-K-----LLYSLNGHREPVYSLAFSP 501 (563)
Q Consensus 430 ~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~--~~-~-----~~~~~~~h~~~i~~l~~sp 501 (563)
++. ..+..+......++|+|++. .+.++.+.++.|.+||+. ++ . ....+.........+++++
T Consensus 169 g~~-~~~~~~~~~~~~i~~s~dg~--------~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~ 239 (326)
T 2ghs_A 169 GKV-TKLFADISIPNSICFSPDGT--------TGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDA 239 (326)
T ss_dssp TEE-EEEEEEESSEEEEEECTTSC--------EEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECT
T ss_pred CcE-EEeeCCCcccCCeEEcCCCC--------EEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECC
Confidence 433 23333334567899999875 244556667899999985 55 2 2333433445578899999
Q ss_pred CCCEEEEEeCCCcEEEEecCCCeeEEEEecCC-CEEEEEEc-CCCCEEEEEECC
Q 008496 502 TGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG-GIFEVCWN-KEGDKIAACFAN 553 (563)
Q Consensus 502 dg~~lasgs~dg~v~iw~~~~~~~~~~~~~~~-~i~~l~w~-~~g~~la~~~~~ 553 (563)
+|.+.++...++.|.+|+. +++.+..+.... .+.+++|+ ++++.|.++...
T Consensus 240 ~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 240 EGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp TSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred CCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecCCCCEEEEEecC
Confidence 9998887777788999998 677777776543 58999998 899888766544
No 209
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.45 E-value=1.1e-10 Score=117.86 Aligned_cols=233 Identities=12% Similarity=0.075 Sum_probs=158.8
Q ss_pred CCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCCc-eEEEEeCCC--eEEEEEcCCCccee
Q 008496 316 GPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV-SFATSSTDN--MIYVCKIGENRPIK 392 (563)
Q Consensus 316 ~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~--~i~~~~~~~~~~~~ 392 (563)
.....|+|+++++.+++...++.|++||+.++...........+. +.|..+. .++.+..++ .|++++........
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~--ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~ 208 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK--PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPT 208 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB--CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc--eeEecCCCcEEEEecCCCceEEEEEcCCCceeE
Confidence 357899999999877777778999999998877655443322222 5554433 344444433 78888876554333
Q ss_pred ee----cCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeee----ecccCCCE-E-EEEEccCCCCCCCCCCcE
Q 008496 393 TF----AGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHD----LREHSKEI-Y-TIRWSPTGSGTNNPNQQL 462 (563)
Q Consensus 393 ~~----~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~----~~~~~~~i-~-~~~~~p~~~~~~~~~~~~ 462 (563)
.+ ......+.+++++|++..|..+..++.|+.||..++..... ...+.... . .++|+|++. .
T Consensus 209 ~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g--------~ 280 (409)
T 3hrp_A 209 RIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDS--------N 280 (409)
T ss_dssp EEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTT--------E
T ss_pred EeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCC--------E
Confidence 33 22445678999999544444577788999999887653221 11222222 2 888988532 3
Q ss_pred EEEEEeCCCeEEEEeCCCCeEEEEecCCC---------------CCEEEEEEcCCCCEEEEEe-CCCcEEEEecCCCeeE
Q 008496 463 ILASASFDSTVKLWDVELGKLLYSLNGHR---------------EPVYSLAFSPTGEYLASGS-LDKSMHIWSLKEGKIV 526 (563)
Q Consensus 463 ~l~s~s~dg~i~iwd~~~~~~~~~~~~h~---------------~~i~~l~~spdg~~lasgs-~dg~v~iw~~~~~~~~ 526 (563)
++++-..++.|+.|+.... +..+.++. .....++|+|+|+++++-+ .+++|+.|++.+|.+.
T Consensus 281 lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~ 358 (409)
T 3hrp_A 281 FYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVS 358 (409)
T ss_dssp EEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEE
T ss_pred EEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEE
Confidence 6667778899999997643 22332221 3468999999999888887 8899999998888754
Q ss_pred EEEecC----------------CCEEEEEEcCCCCEEEEEECCCeEEEEEe
Q 008496 527 KTYTGN----------------GGIFEVCWNKEGDKIAACFANHTVCVLDF 561 (563)
Q Consensus 527 ~~~~~~----------------~~i~~l~w~~~g~~la~~~~~~~v~v~~~ 561 (563)
++.+. .....++++++|..+++-..+++|..+.+
T Consensus 359 -~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 359 -TVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp -EEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred -EEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 33322 24789999999988888888999988875
No 210
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.44 E-value=7.7e-11 Score=118.96 Aligned_cols=233 Identities=11% Similarity=0.060 Sum_probs=158.5
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCC--cEEEEECCCCceeEE
Q 008496 275 KDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDK--TAIVWDVKTEEWKQQ 352 (563)
Q Consensus 275 ~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~--~v~iwd~~~~~~~~~ 352 (563)
.....|+|+++|+++++...++.|++|+..+.....+........ ++|+++++.|++++.++ .|.+|+...+.....
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~ 209 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTR 209 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEE
Confidence 457899999999988888888999999998654444332222233 89999999999888866 788888766544333
Q ss_pred ee---e-cccCeEEEecCC-CceEEEEeCCCeEEEEEcCCCcceee----ecCCCcce--eEEEECCC-CCEEEEEeCCC
Q 008496 353 FE---F-HSGPTLDVDWRN-NVSFATSSTDNMIYVCKIGENRPIKT----FAGHQGEV--NCVKWDPT-GSLLASCSDDV 420 (563)
Q Consensus 353 ~~---~-~~~~~~~~~~~~-~~~~~~~~~d~~i~~~~~~~~~~~~~----~~~h~~~i--~~~~~~~~-~~~las~s~dg 420 (563)
+. . ....+..+.+.. +..+..+..++.|+.|+......... ..++.+.- +.++|+|+ +.++++-+.++
T Consensus 210 ~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~ 289 (409)
T 3hrp_A 210 IGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLS 289 (409)
T ss_dssp EEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTT
T ss_pred eeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCC
Confidence 30 1 122233444444 44444466678899999876543222 22222222 38999995 67777777789
Q ss_pred cEEEEeCCCCceeeeecccC---------------CCEEEEEEccCCCCCCCCCCcEEEEEEe-CCCeEEEEeCCCCeEE
Q 008496 421 TAKIWNMKQDKYVHDLREHS---------------KEIYTIRWSPTGSGTNNPNQQLILASAS-FDSTVKLWDVELGKLL 484 (563)
Q Consensus 421 ~i~iwd~~~~~~~~~~~~~~---------------~~i~~~~~~p~~~~~~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~ 484 (563)
.|+.|+.... +..+.++. .....++++|+|. ++++-+ .++.|+.|++.++...
T Consensus 290 ~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~---------lyvad~~~~~~I~~~~~~~G~v~ 358 (409)
T 3hrp_A 290 SVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGN---------FYIVDGFKGYCLRKLDILDGYVS 358 (409)
T ss_dssp EEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCC---------EEEEETTTTCEEEEEETTTTEEE
T ss_pred EEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCC---------EEEEeCCCCCEEEEEECCCCEEE
Confidence 9999987654 22222221 3467889988874 566677 7899999998777753
Q ss_pred EEecCC---------------CCCEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 008496 485 YSLNGH---------------REPVYSLAFSPTGEYLASGSLDKSMHIWSL 520 (563)
Q Consensus 485 ~~~~~h---------------~~~i~~l~~spdg~~lasgs~dg~v~iw~~ 520 (563)
.+.++ -.....|+++|+|.++++-..+++|+.+++
T Consensus 359 -~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 359 -TVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp -EEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred -EEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 33333 234789999999988888888888888765
No 211
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.42 E-value=5.8e-12 Score=124.45 Aligned_cols=181 Identities=12% Similarity=0.072 Sum_probs=134.0
Q ss_pred CEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecC
Q 008496 317 PIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAG 396 (563)
Q Consensus 317 ~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~ 396 (563)
++..|++++....+++|+.+ .+++|++....-. +. ... +. ..+.... .
T Consensus 39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~--~~--~~~------------------~~--------~~~~~~~-~ 86 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDH--IT--SDS------------------TP--------LTFKWEK-E 86 (388)
T ss_dssp CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHH--HH--SSS------------------CC--------CCCSEEE-E
T ss_pred cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhh--hc--ccc------------------cc--------ccceEEe-e
Confidence 67889999999999999987 5556986532100 00 000 00 0111111 2
Q ss_pred CCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEE
Q 008496 397 HQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLW 476 (563)
Q Consensus 397 h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iw 476 (563)
+.+ |..++| ++++|+++ .++.|++||+.+.........|...+.++.+.+. -+++++.||.|.+|
T Consensus 87 lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p-----------~~av~~~dG~L~v~ 151 (388)
T 1xip_A 87 IPD-VIFVCF--HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN-----------TLVILNSVNDLSAL 151 (388)
T ss_dssp CTT-EEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSS-----------EEEEEETTSEEEEE
T ss_pred CCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecCC-----------CEEEEECCCCEEEE
Confidence 455 899999 99999999 8899999999877666666677788888876542 17788999999999
Q ss_pred eCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCee--EEEE------e----cCCCEEEEEEcCCC
Q 008496 477 DVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKI--VKTY------T----GNGGIFEVCWNKEG 544 (563)
Q Consensus 477 d~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~--~~~~------~----~~~~i~~l~w~~~g 544 (563)
|+..+.... +...|.+++|||+| ++.|..||+|++|+...+.+ .+++ . +...|.+++|.+++
T Consensus 152 dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~ 225 (388)
T 1xip_A 152 DLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQ 225 (388)
T ss_dssp ETTTCCEEE----EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSS
T ss_pred EccCCcccc----ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCC
Confidence 999877653 34579999999999 78899999999999988776 5566 2 24569999999999
Q ss_pred CEEEEE
Q 008496 545 DKIAAC 550 (563)
Q Consensus 545 ~~la~~ 550 (563)
.+|++=
T Consensus 226 ~flv~y 231 (388)
T 1xip_A 226 DFLAVF 231 (388)
T ss_dssp EEEEEE
T ss_pred eEEEEE
Confidence 888753
No 212
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.40 E-value=1.6e-10 Score=111.89 Aligned_cols=230 Identities=9% Similarity=0.038 Sum_probs=153.7
Q ss_pred CeEEEEECCCCC-EEEEEeCCCeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEee
Q 008496 276 DVTTLDWNGEGT-LLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFE 354 (563)
Q Consensus 276 ~V~~l~~s~~g~-~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~ 354 (563)
......|+++|+ +++++..++.|..|+.++.. ..+..+...+.++.++++|+.+++...++.|.+|+.. +.......
T Consensus 46 ~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g~~-~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~ 123 (305)
T 3dr2_A 46 WSEGPAWWEAQRTLVWSDLVGRRVLGWREDGTV-DVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVG 123 (305)
T ss_dssp SEEEEEEEGGGTEEEEEETTTTEEEEEETTSCE-EEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEC
T ss_pred CccCCeEeCCCCEEEEEECCCCEEEEEeCCCCE-EEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEe
Confidence 356788999998 66777788999999987653 4455566778999999999966665566889999875 43211100
Q ss_pred ecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecC-CCcceeEEEECCCCCEEEE----EeC-----------
Q 008496 355 FHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAG-HQGEVNCVKWDPTGSLLAS----CSD----------- 418 (563)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~-h~~~i~~~~~~~~~~~las----~s~----------- 418 (563)
. ..+ ....++.++++|+|++.+| |..
T Consensus 124 ~--------------------------------------~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~ 165 (305)
T 3dr2_A 124 R--------------------------------------YAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPE 165 (305)
T ss_dssp E--------------------------------------ETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCS
T ss_pred c--------------------------------------cCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccc
Confidence 0 000 0124567888999998876 332
Q ss_pred --CCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCC------CeEEEEeCCCCeEE--EEe-
Q 008496 419 --DVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD------STVKLWDVELGKLL--YSL- 487 (563)
Q Consensus 419 --dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~d------g~i~iwd~~~~~~~--~~~- 487 (563)
.+.|..||..+++..... .......++|+|++. .|..+... +.|.+|++..+... ..+
T Consensus 166 ~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~~spdg~---------~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~ 234 (305)
T 3dr2_A 166 LAHHSVYRLPPDGSPLQRMA--DLDHPNGLAFSPDEQ---------TLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFA 234 (305)
T ss_dssp SSCEEEEEECSSSCCCEEEE--EESSEEEEEECTTSS---------EEEEEECCC---CCCEEEEEEEETTEEEEEEEEE
T ss_pred cCCCeEEEEcCCCCcEEEEe--cCCCCcceEEcCCCC---------EEEEEecCCcCCCCCEEEEEEecCCCccCCeEEE
Confidence 245677776666543322 334567899999875 34444443 78999998755411 111
Q ss_pred cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEecCCCEEEEEEcCCCCEEEEEECCCeEEEEE
Q 008496 488 NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLD 560 (563)
Q Consensus 488 ~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~g~~la~~~~~~~v~v~~ 560 (563)
.........++++++|++.++. .+| |.+|+. +++.+..+.....+..++|+++++.|.++..+ .+..++
T Consensus 235 ~~~~~~pdgi~~d~~G~lwv~~-~~g-v~~~~~-~g~~~~~~~~~~~~~~~~f~~d~~~L~it~~~-~l~~~~ 303 (305)
T 3dr2_A 235 SVPDGLPDGFCVDRGGWLWSSS-GTG-VCVFDS-DGQLLGHIPTPGTASNCTFDQAQQRLFITGGP-CLWMLP 303 (305)
T ss_dssp CCSSSCCCSEEECTTSCEEECC-SSE-EEEECT-TSCEEEEEECSSCCCEEEECTTSCEEEEEETT-EEEEEE
T ss_pred ECCCCCCCeEEECCCCCEEEec-CCc-EEEECC-CCCEEEEEECCCceeEEEEeCCCCEEEEEcCC-eEEEEE
Confidence 1122334678999999965544 444 999998 57777777766678899999999999988776 444444
No 213
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.39 E-value=2.1e-10 Score=114.95 Aligned_cols=242 Identities=10% Similarity=0.072 Sum_probs=161.4
Q ss_pred EEEECCCCCEEEEEe----------CCCeEEEEEcCC-ceeEeeccC-------CCCEEEEEeCCCCCEEEEeeC--CCc
Q 008496 279 TLDWNGEGTLLATGS----------YDGQARIWSTNG-DLKCTLSKH-------KGPIFSLKWNKKGDYLLTGSC--DKT 338 (563)
Q Consensus 279 ~l~~s~~g~~l~sg~----------~dg~i~vw~~~~-~~~~~~~~h-------~~~V~~l~~~~~~~~l~s~s~--D~~ 338 (563)
.++++|||++++++. .++.|.++|... +....+.-- ......+.|+|+|++++.+.. +++
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~ 201 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPA 201 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCE
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCe
Confidence 789999999888876 367899999764 444443211 122356889999999998874 578
Q ss_pred EEEEECCCCceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCccee----eecCCCcc-eeEEEECCCCCEE
Q 008496 339 AIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIK----TFAGHQGE-VNCVKWDPTGSLL 413 (563)
Q Consensus 339 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~----~~~~h~~~-i~~~~~~~~~~~l 413 (563)
|.+.|+.+++.+..+..... ..+.......|++.+.|+.+.+.+....+... .+.-...+ ...+.+.+++..+
T Consensus 202 VsVID~~t~kvv~~I~v~g~--~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~ 279 (426)
T 3c75_H 202 VGVVDLEGKTFDRMLDVPDC--YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRL 279 (426)
T ss_dssp EEEEETTTTEEEEEEECCSE--EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEE
T ss_pred EEEEECCCCeEEEEEEcCCc--eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEE
Confidence 99999999998887764221 12222233566777788888777775444332 12111112 2245789998887
Q ss_pred EEEeCCCcEEEEeCCCCcee--eeecc----------cCCCEEEEEEccCCCCCCCCCCcEEEEEEe--------CCCeE
Q 008496 414 ASCSDDVTAKIWNMKQDKYV--HDLRE----------HSKEIYTIRWSPTGSGTNNPNQQLILASAS--------FDSTV 473 (563)
Q Consensus 414 as~s~dg~i~iwd~~~~~~~--~~~~~----------~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s--------~dg~i 473 (563)
+..+..+.+.+.|....... ..+.. .......++++|++. .++++... ..+.|
T Consensus 280 ~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~-------rlyVa~~~~~~gthk~~s~~V 352 (426)
T 3c75_H 280 VWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSD-------RIYLLVDQRDEWKHKAASRFV 352 (426)
T ss_dssp EEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGT-------EEEEEEEECCTTCTTSCEEEE
T ss_pred EEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCC-------EEEEEecccccccccCCCCEE
Confidence 77788899999998654321 11100 001111256677654 22333221 13579
Q ss_pred EEEeCCCCeEEEEecCCCCCEEEEEEcCCCC-EEEEEe-CCCcEEEEecCCCeeEEEEe
Q 008496 474 KLWDVELGKLLYSLNGHREPVYSLAFSPTGE-YLASGS-LDKSMHIWSLKEGKIVKTYT 530 (563)
Q Consensus 474 ~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~-~lasgs-~dg~v~iw~~~~~~~~~~~~ 530 (563)
.+.|+.+.+.+.++..- .....++|+|||+ +++++. .++.|.|+|+.++++++++.
T Consensus 353 sVID~~T~kvv~~I~vg-~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI~ 410 (426)
T 3c75_H 353 VVLNAETGERINKIELG-HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSVD 410 (426)
T ss_dssp EEEETTTCCEEEEEEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEEC
T ss_pred EEEECCCCeEEEEEECC-CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEec
Confidence 99999999998887532 2468899999999 888887 58999999999999999973
No 214
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.39 E-value=2.3e-11 Score=131.90 Aligned_cols=235 Identities=14% Similarity=0.157 Sum_probs=155.2
Q ss_pred CCCCEEEEEeCCCCCEEEE-----eeCCCcEEEEECCCCceeEEeeecccCeEEEecCCCceEEEEeCCC----------
Q 008496 314 HKGPIFSLKWNKKGDYLLT-----GSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDN---------- 378 (563)
Q Consensus 314 h~~~V~~l~~~~~~~~l~s-----~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~---------- 378 (563)
|...+.+++|||+|++|+- |+.+.+|++||+.+++..... ........+.|.++..|+.++.+.
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~k~~~~~WsDg~~l~y~~~~~~~~~~~~~~~ 205 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LKDVKFSGISWLGNEGFFYSSYDKPDGSELSART 205 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EEEEESCCCEEETTTEEEEEESSCCC-------C
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cCCceeccEEEeCCCEEEEEEecCcccccccccC
Confidence 5557888999999998873 333357999999999865431 111112345677445566665553
Q ss_pred ---eEEEEEcCCCcc--eeeec--C-CCcceeEEEECCCCCEEEEEeC----CCcEEEEeCCCCc-eeeeecccCCCEEE
Q 008496 379 ---MIYVCKIGENRP--IKTFA--G-HQGEVNCVKWDPTGSLLASCSD----DVTAKIWNMKQDK-YVHDLREHSKEIYT 445 (563)
Q Consensus 379 ---~i~~~~~~~~~~--~~~~~--~-h~~~i~~~~~~~~~~~las~s~----dg~i~iwd~~~~~-~~~~~~~~~~~i~~ 445 (563)
.|++|++++... ...+. . |...+..+.|+|||++|+..+. +..|.+||+.++. ....+..+......
T Consensus 206 ~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~ 285 (693)
T 3iuj_A 206 DQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVS 285 (693)
T ss_dssp CCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEE
T ss_pred CCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEE
Confidence 489999987643 33333 3 4445778999999998754332 3488999987653 33445555555555
Q ss_pred EEEccCCCCCCCCCCcEEEEEEeCC---CeEEEEeCCCCeE--EEEecCCCCCEEEEEEcCCCCEEEEEeCCC---cEEE
Q 008496 446 IRWSPTGSGTNNPNQQLILASASFD---STVKLWDVELGKL--LYSLNGHREPVYSLAFSPTGEYLASGSLDK---SMHI 517 (563)
Q Consensus 446 ~~~~p~~~~~~~~~~~~~l~s~s~d---g~i~iwd~~~~~~--~~~~~~h~~~i~~l~~spdg~~lasgs~dg---~v~i 517 (563)
. |++++. .+++....+ +.|..+|+.++.. ...+..|...+. .|+|++++|+....++ .|++
T Consensus 286 ~-~~~~g~--------~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~ 354 (693)
T 3iuj_A 286 L-VDNKGS--------TLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQ 354 (693)
T ss_dssp E-EEEETT--------EEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEE
T ss_pred E-EeccCC--------EEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEE
Confidence 4 555543 244444443 6899999987653 234556666655 8999999888766543 6899
Q ss_pred EecCCCeeEEEEe--cCCCEEEEEEcCCCCEEEEEECC----CeEEEEEe
Q 008496 518 WSLKEGKIVKTYT--GNGGIFEVCWNKEGDKIAACFAN----HTVCVLDF 561 (563)
Q Consensus 518 w~~~~~~~~~~~~--~~~~i~~l~w~~~g~~la~~~~~----~~v~v~~~ 561 (563)
|++..+. ...+. ..+.+..++++++++.|+..+.+ +++..+|+
T Consensus 355 ~d~~g~~-~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~ 403 (693)
T 3iuj_A 355 FDYEGKR-VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEP 403 (693)
T ss_dssp ECTTSCE-EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECT
T ss_pred EECCCCe-eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEEC
Confidence 9987544 44443 34557788999999998888776 67777775
No 215
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.39 E-value=1.1e-11 Score=122.50 Aligned_cols=166 Identities=11% Similarity=0.071 Sum_probs=129.0
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEEcCCc----------e-eEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEEC
Q 008496 276 DVTTLDWNGEGTLLATGSYDGQARIWSTNGD----------L-KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDV 344 (563)
Q Consensus 276 ~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~----------~-~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~ 344 (563)
.+..|++++...++++|+.++ +++|++..- . ......+.+ |+.|+| ++++|+++ .++.|++||+
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv 113 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDL 113 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEES
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEc
Confidence 588999999999999999985 555974311 1 112234666 999999 89999998 8899999999
Q ss_pred CCCceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEE
Q 008496 345 KTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKI 424 (563)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~i 424 (563)
.+.........+..++.++.+.... ++++..||.+++|++....... +...|+|++|+|+| ++.|..||++++
T Consensus 114 ~sl~~~~~~~~~~~~v~~i~~~~p~-~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~dg~i~~ 186 (388)
T 1xip_A 114 EELSEFRTVTSFEKPVFQLKNVNNT-LVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKDRSFQS 186 (388)
T ss_dssp SSTTCEEEEEECSSCEEEEEECSSE-EEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEETTSCEEE
T ss_pred hhhhccCccceeecceeeEEecCCC-EEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEcCCcEEE
Confidence 8776655566666777777776553 8889999999999998766543 44579999999999 678999999999
Q ss_pred EeCCCCce--eeee------c---ccCCCEEEEEEccCCC
Q 008496 425 WNMKQDKY--VHDL------R---EHSKEIYTIRWSPTGS 453 (563)
Q Consensus 425 wd~~~~~~--~~~~------~---~~~~~i~~~~~~p~~~ 453 (563)
|+...... ..++ . +|...|.+|.|.+++.
T Consensus 187 ~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~ 226 (388)
T 1xip_A 187 FAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQD 226 (388)
T ss_dssp EEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSE
T ss_pred EcCCCccccccceecCCcccccccCCCeeEEEEEEecCCe
Confidence 98877664 4445 2 3678899999998753
No 216
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.38 E-value=1.9e-10 Score=113.08 Aligned_cols=266 Identities=10% Similarity=0.037 Sum_probs=172.6
Q ss_pred ECCCCCEEEEEeC-----CCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEEEEee----------CCCcEEEEECC
Q 008496 282 WNGEGTLLATGSY-----DGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGS----------CDKTAIVWDVK 345 (563)
Q Consensus 282 ~s~~g~~l~sg~~-----dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s----------~D~~v~iwd~~ 345 (563)
..|+++.+.+... ++.|.+.|.. ++...++..-..+ .+.++|+|++++.++ .++.|.+||..
T Consensus 40 ~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P--~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~ 117 (386)
T 3sjl_D 40 PAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPV 117 (386)
T ss_dssp CCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT
T ss_pred cCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC--cEEECCCCCEEEEEcccccccccCCCCCEEEEEECC
Confidence 3578888887765 6789999976 4555566544555 399999999988776 36789999999
Q ss_pred CCceeEEeeecc-------cCeEEEecCCC--ceEEEEe-CCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEE
Q 008496 346 TEEWKQQFEFHS-------GPTLDVDWRNN--VSFATSS-TDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLAS 415 (563)
Q Consensus 346 ~~~~~~~~~~~~-------~~~~~~~~~~~--~~~~~~~-~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las 415 (563)
+.+....+.... .....+.+..+ ..+++.. .++.|.++|..+.+.+.++.-.. . ...+....+.+++
T Consensus 118 t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~-~~~~P~g~~~~~~ 194 (386)
T 3sjl_D 118 TLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--C-YHIFPTAPDTFFM 194 (386)
T ss_dssp TCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E-EEEEEEETTEEEE
T ss_pred CCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--c-ceeecCCCceeEE
Confidence 999888776532 12223344333 3344443 37899999999998887774321 1 1223223456677
Q ss_pred EeCCCcEEEEeCCC-Cceeeeeccc----CCCEE-EEEEc-cCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe--EEEE
Q 008496 416 CSDDVTAKIWNMKQ-DKYVHDLREH----SKEIY-TIRWS-PTGSGTNNPNQQLILASASFDSTVKLWDVELGK--LLYS 486 (563)
Q Consensus 416 ~s~dg~i~iwd~~~-~~~~~~~~~~----~~~i~-~~~~~-p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~--~~~~ 486 (563)
.+.||++-+.++.+ ++.......+ ..++. ...|. ++| ..+ -.+.+|.|.+.|+..+. .+..
T Consensus 195 ~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG--------~~~--~vs~~g~V~v~d~~~~~~~v~~~ 264 (386)
T 3sjl_D 195 HCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAG--------RLV--WPTYTGKIHQIDLSSGDAKFLPA 264 (386)
T ss_dssp EETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTT--------EEE--EEBTTSEEEEEECTTSSCEECCC
T ss_pred ECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCC--------cEE--EEeCCCEEEEEECCCCcceeecc
Confidence 78888888888875 4432211101 01111 11222 222 222 35568999999997653 2222
Q ss_pred ec---------C-CCCCEEEEEEcCCCCEEEEEeC----------CCcEEEEecCCCeeEEEEecCCCEEEEEEcCCCC-
Q 008496 487 LN---------G-HREPVYSLAFSPTGEYLASGSL----------DKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGD- 545 (563)
Q Consensus 487 ~~---------~-h~~~i~~l~~spdg~~lasgs~----------dg~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~g~- 545 (563)
+. + ....+..++++|+++.|..... .+.|.+.|+.++++++.+.....+..|++++||+
T Consensus 265 ~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~~ 344 (386)
T 3sjl_D 265 VEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKP 344 (386)
T ss_dssp EESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSSC
T ss_pred eeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCCe
Confidence 21 0 0122345788999988776542 2579999999999999998777788999999997
Q ss_pred EEEEE-ECCCeEEEEEee
Q 008496 546 KIAAC-FANHTVCVLDFR 562 (563)
Q Consensus 546 ~la~~-~~~~~v~v~~~~ 562 (563)
+|.++ ..++.|.|+|..
T Consensus 345 ~ly~tn~~~~~VsViD~~ 362 (386)
T 3sjl_D 345 LLYALSTGDKTLYIHDAE 362 (386)
T ss_dssp EEEEEETTTTEEEEEETT
T ss_pred EEEEEcCCCCeEEEEECC
Confidence 66654 458899999964
No 217
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.36 E-value=3.1e-11 Score=119.13 Aligned_cols=256 Identities=9% Similarity=0.047 Sum_probs=164.5
Q ss_pred CCeEEEEECCCCCEEEEEe--CCCeEEEEEc-CCceeE------eeccCCCCEEEEEeCCCCCEEEEeeC-----CCcEE
Q 008496 275 KDVTTLDWNGEGTLLATGS--YDGQARIWST-NGDLKC------TLSKHKGPIFSLKWNKKGDYLLTGSC-----DKTAI 340 (563)
Q Consensus 275 ~~V~~l~~s~~g~~l~sg~--~dg~i~vw~~-~~~~~~------~~~~h~~~V~~l~~~~~~~~l~s~s~-----D~~v~ 340 (563)
..+..++++++|+++++.. .++.++||.. ++.+.. ....|-..+.+++++++|+.+++-.. +..|.
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~ 96 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLV 96 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEE
Confidence 3578999999999998864 2343555554 444321 11235568999999999875555433 57899
Q ss_pred EEECCCCceeEEeeeccc------CeEEEecC--CCceEEEEe---CCCeEEEEEcCCCcceeeecCCCccee-EEEECC
Q 008496 341 VWDVKTEEWKQQFEFHSG------PTLDVDWR--NNVSFATSS---TDNMIYVCKIGENRPIKTFAGHQGEVN-CVKWDP 408 (563)
Q Consensus 341 iwd~~~~~~~~~~~~~~~------~~~~~~~~--~~~~~~~~~---~d~~i~~~~~~~~~~~~~~~~h~~~i~-~~~~~~ 408 (563)
+||+.+++....+..... ...++... ....+++.. .++.|++|+..+.+..+.+.+|..... ...+.+
T Consensus 97 ~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~ 176 (343)
T 2qe8_A 97 AWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVI 176 (343)
T ss_dssp EEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEE
T ss_pred EEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeE
Confidence 999999987776654321 12344443 344556655 678999999987776666665532211 133445
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCC-eEEEEeCC---CCe--
Q 008496 409 TGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDS-TVKLWDVE---LGK-- 482 (563)
Q Consensus 409 ~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg-~i~iwd~~---~~~-- 482 (563)
+|..+.+.+.++.++.|.. .+..++|+|++. .|..+..++ .|..++.. .+.
T Consensus 177 ~g~~~~~~~~~g~~~~~~~--------------~~~gia~s~dg~---------~ly~~~~~~~~l~~~~~~~~~~~~~~ 233 (343)
T 2qe8_A 177 DGVPVQIGQPDGTVIRPHL--------------GVNGIVLDAENE---------WLYLSPMHSTSMYRIKSADLSNLQLT 233 (343)
T ss_dssp TTEECBEECTTSCEECCCC--------------CEEEEEECTTSC---------EEEEEESSCSEEEEEEHHHHTCTTCC
T ss_pred CCEEEEeccCCCceeceec--------------ccceeEeccCCC---------EEEEEeCCCCeEEEEEHHHhcCCCCC
Confidence 6777777788888776641 356799999875 455555555 44444421 110
Q ss_pred ---EE--EEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEec--CCCEEEEEEcCCCCEEEEEECC
Q 008496 483 ---LL--YSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG--NGGIFEVCWNKEGDKIAACFAN 553 (563)
Q Consensus 483 ---~~--~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~--~~~i~~l~w~~~g~~la~~~~~ 553 (563)
.. ....++......++++++|.++++...++.|.+|+..+|++...... -..+.+++++++|+.++++...
T Consensus 234 ~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~ 311 (343)
T 2qe8_A 234 DAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQL 311 (343)
T ss_dssp HHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCG
T ss_pred hhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCcc
Confidence 00 01112333456799999999999998999999999866765433332 2347899999999877776543
No 218
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.35 E-value=2.5e-10 Score=114.29 Aligned_cols=264 Identities=8% Similarity=-0.006 Sum_probs=166.7
Q ss_pred CCCCEEEEEeCC-----CeEEEEEcCC-ceeEeeccCCCCEEEEEeCCCCCEEEEee----------CCCcEEEEECCCC
Q 008496 284 GEGTLLATGSYD-----GQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGS----------CDKTAIVWDVKTE 347 (563)
Q Consensus 284 ~~g~~l~sg~~d-----g~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s----------~D~~v~iwd~~~~ 347 (563)
+++..+++.... +.|.+.|... +...++..-..| .+.++|+|++|+.+. .++.|.++|..+.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~ 159 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF 159 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence 345555554432 6899999764 455555544456 899999999988876 3678999999999
Q ss_pred ceeEEeeec-------ccCeEEEecCCC--ceEEEEeC-CCeEEEEEcCCCcceeeecCCCcceeEEEECCCC-CEEEEE
Q 008496 348 EWKQQFEFH-------SGPTLDVDWRNN--VSFATSST-DNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTG-SLLASC 416 (563)
Q Consensus 348 ~~~~~~~~~-------~~~~~~~~~~~~--~~~~~~~~-d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~-~~las~ 416 (563)
+.+..+... ......+.+..+ ..+++... ++.|.+.|..+.+.+..+.--. +....|++ ..+++.
T Consensus 160 ~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g----~~~~~p~g~~~~v~~ 235 (426)
T 3c75_H 160 LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD----CYHIFPASPTVFYMN 235 (426)
T ss_dssp CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS----EEEEEEEETTEEEEE
T ss_pred cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC----ceeeccCCCcEEEEE
Confidence 988877643 111223334333 33344333 6889999999988777665311 12233333 455666
Q ss_pred eCCCcEEEEeCCCCceeee----ecccCCCE-EEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEE----Ee
Q 008496 417 SDDVTAKIWNMKQDKYVHD----LREHSKEI-YTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLY----SL 487 (563)
Q Consensus 417 s~dg~i~iwd~~~~~~~~~----~~~~~~~i-~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~----~~ 487 (563)
+.||.+.+.+..+++.... +.....++ ..+.+.+++. .+++ .+..+.|.+.|...+.... .+
T Consensus 236 ~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~--------~~~~-~s~~g~V~ViD~~~~~~~v~~~~~~ 306 (426)
T 3c75_H 236 CRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSG--------RLVW-PTYTGKIFQADLTAEGATFRAPIEA 306 (426)
T ss_dssp ETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTC--------EEEE-EBTTSEEEEEEECSSCEEECCCEES
T ss_pred cCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCC--------EEEE-EeCCCcEEEEeccCCceEEeeeeee
Confidence 7777777777744443311 11111111 1223445442 2333 3567899999986544321 11
Q ss_pred cC-C-------CCCEEEEEEcCCCCEEEEEeC----------CCcEEEEecCCCeeEEEEecCCCEEEEEEcCCCC-EEE
Q 008496 488 NG-H-------REPVYSLAFSPTGEYLASGSL----------DKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGD-KIA 548 (563)
Q Consensus 488 ~~-h-------~~~i~~l~~spdg~~lasgs~----------dg~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~g~-~la 548 (563)
.. . ......++|+||++.+.+... ++.|.+.|+.++++++++........++|+|||+ +|+
T Consensus 307 ~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~spDg~~~ly 386 (426)
T 3c75_H 307 LTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGHEIDSINVSQDAEPLLY 386 (426)
T ss_dssp SCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEE
T ss_pred ccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCCCcCeEEEccCCCEEEE
Confidence 00 0 011223789999887665532 3579999999999999998766788999999999 787
Q ss_pred EEE-CCCeEEEEEee
Q 008496 549 ACF-ANHTVCVLDFR 562 (563)
Q Consensus 549 ~~~-~~~~v~v~~~~ 562 (563)
++. .++.|.|||.+
T Consensus 387 v~n~~s~~VsVID~~ 401 (426)
T 3c75_H 387 ALSAGTQTLHIYDAA 401 (426)
T ss_dssp EEETTTTEEEEEETT
T ss_pred EEcCCCCeEEEEECC
Confidence 776 58999999964
No 219
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.34 E-value=2.4e-10 Score=123.79 Aligned_cols=243 Identities=15% Similarity=0.135 Sum_probs=150.8
Q ss_pred cCCCCceEEEEECCCCCEEEEe-----eCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCC
Q 008496 212 EGHTSEVCACAWSPAGSLLASG-----SGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG 286 (563)
Q Consensus 212 ~~h~~~V~~~~~sp~~~~latg-----s~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g 286 (563)
.+|...+..++|||||++||.+ +.+..|++||+.++.... . ..... ....++|+ ||
T Consensus 125 ~~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~-----------~-~~~~~------k~~~~~Ws-Dg 185 (693)
T 3iuj_A 125 PDGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLE-----------T-PLKDV------KFSGISWL-GN 185 (693)
T ss_dssp TTSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEE-----------E-EEEEE------ESCCCEEE-TT
T ss_pred CCCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCc-----------c-ccCCc------eeccEEEe-CC
Confidence 3466678899999999988843 334689999998764210 0 11000 02456899 99
Q ss_pred CEEEEEeCCC-------------eEEEEEcCCce-----eEeecc-CCCCEEEEEeCCCCCEEEEeeC----CCcEEEEE
Q 008496 287 TLLATGSYDG-------------QARIWSTNGDL-----KCTLSK-HKGPIFSLKWNKKGDYLLTGSC----DKTAIVWD 343 (563)
Q Consensus 287 ~~l~sg~~dg-------------~i~vw~~~~~~-----~~~~~~-h~~~V~~l~~~~~~~~l~s~s~----D~~v~iwd 343 (563)
+.|+.++.+. .|++|++.... +..... |...+.++.|+|+|++|+.... ++.|.+||
T Consensus 186 ~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d 265 (693)
T 3iuj_A 186 EGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKD 265 (693)
T ss_dssp TEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEE
T ss_pred CEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEE
Confidence 9999998874 38999875432 222233 4455788999999998864432 24677777
Q ss_pred CCCCceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEE-EEeCC---
Q 008496 344 VKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLA-SCSDD--- 419 (563)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~la-s~s~d--- 419 (563)
+.++.. ....+..+....... |+++|..|+ +...+
T Consensus 266 ~~~~~~----------------------------------------~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~ 304 (693)
T 3iuj_A 266 LSQENA----------------------------------------PLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPN 304 (693)
T ss_dssp TTSTTC----------------------------------------CCEEEECSSSSCEEE-EEEETTEEEEEECTTCTT
T ss_pred CCCCCC----------------------------------------ceEEEeCCCCceEEE-EeccCCEEEEEECCCCCC
Confidence 655420 111122222223233 445555444 33333
Q ss_pred CcEEEEeCCCCce--eeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCC--eEEEEeCCCCeEEEEec-CCCCCE
Q 008496 420 VTAKIWNMKQDKY--VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDS--TVKLWDVELGKLLYSLN-GHREPV 494 (563)
Q Consensus 420 g~i~iwd~~~~~~--~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg--~i~iwd~~~~~~~~~~~-~h~~~i 494 (563)
+.|..+++.++.. ...+..|...+. .|+|++. .++++...++ .|++||+..+. ...+. .....+
T Consensus 305 ~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~--------~lv~~~~~~g~~~l~~~d~~g~~-~~~l~~p~~~~~ 373 (693)
T 3iuj_A 305 RRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSG--------YLFAEYMVDATARVEQFDYEGKR-VREVALPGLGSV 373 (693)
T ss_dssp CEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETT--------EEEEEEEETTEEEEEEECTTSCE-EEEECCSSSSEE
T ss_pred CEEEEEeCCCCCccccEEEecCCCCEE--EEEEECC--------EEEEEEEECCeeEEEEEECCCCe-eEEeecCCCceE
Confidence 5788889887643 234555655555 7888764 3455555555 68899987544 44443 234567
Q ss_pred EEEEEcCCCCEEEEEeCC----CcEEEEecCCCee
Q 008496 495 YSLAFSPTGEYLASGSLD----KSMHIWSLKEGKI 525 (563)
Q Consensus 495 ~~l~~spdg~~lasgs~d----g~v~iw~~~~~~~ 525 (563)
..++++|++..|+....+ ++|..||+.+++.
T Consensus 374 ~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~ 408 (693)
T 3iuj_A 374 SGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI 408 (693)
T ss_dssp EECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred EeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence 788889998777655443 7899999988764
No 220
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.33 E-value=2.3e-09 Score=103.25 Aligned_cols=226 Identities=12% Similarity=0.108 Sum_probs=145.6
Q ss_pred CCCceEEEEECCC-CCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEE
Q 008496 214 HTSEVCACAWSPA-GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATG 292 (563)
Q Consensus 214 h~~~V~~~~~sp~-~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg 292 (563)
+..-..+..|+|+ +.++++...++.|..|+..++.. .... ....+.+++++++|+++++
T Consensus 11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-----------~~~~--------~~~~~~~i~~~~dG~l~v~- 70 (297)
T 3g4e_A 11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-----------QRVT--------MDAPVSSVALRQSGGYVAT- 70 (297)
T ss_dssp CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-----------EEEE--------CSSCEEEEEEBTTSSEEEE-
T ss_pred CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-----------EEEe--------CCCceEEEEECCCCCEEEE-
Confidence 3344568899996 55777777889999999865421 0110 1246899999999996554
Q ss_pred eCCCeEEEEEcCCceeEeeccC-----CCCEEEEEeCCCCCEEEEeeCCC---------cEEEEECCCCceeEEeeeccc
Q 008496 293 SYDGQARIWSTNGDLKCTLSKH-----KGPIFSLKWNKKGDYLLTGSCDK---------TAIVWDVKTEEWKQQFEFHSG 358 (563)
Q Consensus 293 ~~dg~i~vw~~~~~~~~~~~~h-----~~~V~~l~~~~~~~~l~s~s~D~---------~v~iwd~~~~~~~~~~~~~~~ 358 (563)
. ++.|.+|+........+... ...+..++++|+|+.+++...+. ...||.+..
T Consensus 71 ~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~------------ 137 (297)
T 3g4e_A 71 I-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFP------------ 137 (297)
T ss_dssp E-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECT------------
T ss_pred E-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEEC------------
Confidence 4 56899999865433333221 23478899999998665443221 112222111
Q ss_pred CeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEE-EEEeCCCcEEEEeC--CCCce---
Q 008496 359 PTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLL-ASCSDDVTAKIWNM--KQDKY--- 432 (563)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l-as~s~dg~i~iwd~--~~~~~--- 432 (563)
...+..+..+....+.++|+|+++.| ++.+.++.|.+|++ .++..
T Consensus 138 -----------------------------~g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~ 188 (297)
T 3g4e_A 138 -----------------------------DHHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNR 188 (297)
T ss_dssp -----------------------------TSCEEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEE
T ss_pred -----------------------------CCCEEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCc
Confidence 00011111122345789999999865 55666889999987 34432
Q ss_pred --eeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEc-CCCCEEEEE
Q 008496 433 --VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFS-PTGEYLASG 509 (563)
Q Consensus 433 --~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s-pdg~~lasg 509 (563)
...+..+......+++.++|. +.++....+.|..||..+++.+..+..+...+++++|+ ||++.|..+
T Consensus 189 ~~~~~~~~~~~~p~g~~~d~~G~---------lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt 259 (297)
T 3g4e_A 189 RSVYKLEKEEQIPDGMCIDAEGK---------LWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVT 259 (297)
T ss_dssp EEEEECCGGGCEEEEEEEBTTSC---------EEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEE
T ss_pred EEEEECCCCCCCCCeeEECCCCC---------EEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEE
Confidence 222333345667888888774 55666677889999999999988887776779999998 898776554
Q ss_pred e
Q 008496 510 S 510 (563)
Q Consensus 510 s 510 (563)
+
T Consensus 260 ~ 260 (297)
T 3g4e_A 260 C 260 (297)
T ss_dssp E
T ss_pred c
Confidence 4
No 221
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.31 E-value=5.2e-10 Score=108.28 Aligned_cols=235 Identities=14% Similarity=0.059 Sum_probs=144.5
Q ss_pred CCceeEecCCCCceEEEEECCCCC-EEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEEC
Q 008496 205 NSDVTILEGHTSEVCACAWSPAGS-LLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWN 283 (563)
Q Consensus 205 ~~~~~~l~~h~~~V~~~~~sp~~~-~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s 283 (563)
...+..+..+.......+|+|+++ +++++..++.|..|+.. +.. ..+. .....+..++|+
T Consensus 34 ~~~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~~-----------~~~~-------~~~~~~~gl~~d 94 (305)
T 3dr2_A 34 DARLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GTV-----------DVLL-------DATAFTNGNAVD 94 (305)
T ss_dssp TCCCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SCE-----------EEEE-------ESCSCEEEEEEC
T ss_pred CCceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CCE-----------EEEe-------CCCCccceeeEC
Confidence 334455555666678899999998 67777788999999863 211 1111 123458899999
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCceeEeeccC----CCCEEEEEeCCCCCEEEE----eeCC-------------CcEEEE
Q 008496 284 GEGTLLATGSYDGQARIWSTNGDLKCTLSKH----KGPIFSLKWNKKGDYLLT----GSCD-------------KTAIVW 342 (563)
Q Consensus 284 ~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h----~~~V~~l~~~~~~~~l~s----~s~D-------------~~v~iw 342 (563)
++|+++++...++.|.+|+.++......... ...+..+.+.|+|+..++ |..+ +.|..|
T Consensus 95 ~dG~l~v~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~ 174 (305)
T 3dr2_A 95 AQQRLVHCEHGRRAITRSDADGQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRL 174 (305)
T ss_dssp TTSCEEEEETTTTEEEEECTTSCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEE
T ss_pred CCCCEEEEECCCCEEEEECCCCCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEE
Confidence 9999777666678899999876643322111 123566888888877765 3221 223333
Q ss_pred ECCCCceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCC---
Q 008496 343 DVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDD--- 419 (563)
Q Consensus 343 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~d--- 419 (563)
|..+++ .... . .....+.++|+|+++.|+.+...
T Consensus 175 d~~~g~-----------------------------------------~~~~-~-~~~~p~gl~~spdg~~lyv~~~~~~~ 211 (305)
T 3dr2_A 175 PPDGSP-----------------------------------------LQRM-A-DLDHPNGLAFSPDEQTLYVSQTPEQG 211 (305)
T ss_dssp CSSSCC-----------------------------------------CEEE-E-EESSEEEEEECTTSSEEEEEECCC--
T ss_pred cCCCCc-----------------------------------------EEEE-e-cCCCCcceEEcCCCCEEEEEecCCcC
Confidence 322221 1111 1 22345689999999977666554
Q ss_pred ---CcEEEEeCCCCcee--eee-cccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCC
Q 008496 420 ---VTAKIWNMKQDKYV--HDL-REHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREP 493 (563)
Q Consensus 420 ---g~i~iwd~~~~~~~--~~~-~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~ 493 (563)
+.|.+|++..+... ..+ .........+++.++|. ++ .+..+ .|.+|+. .++.+..+..+. .
T Consensus 212 ~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~--------lw--v~~~~-gv~~~~~-~g~~~~~~~~~~-~ 278 (305)
T 3dr2_A 212 HGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGW--------LW--SSSGT-GVCVFDS-DGQLLGHIPTPG-T 278 (305)
T ss_dssp -CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSC--------EE--ECCSS-EEEEECT-TSCEEEEEECSS-C
T ss_pred CCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCC--------EE--EecCC-cEEEECC-CCCEEEEEECCC-c
Confidence 68999998654311 011 11122233456666553 23 33344 5999998 477776666544 5
Q ss_pred EEEEEEcCCCCEEEEEeCCCc
Q 008496 494 VYSLAFSPTGEYLASGSLDKS 514 (563)
Q Consensus 494 i~~l~~spdg~~lasgs~dg~ 514 (563)
+.+++|+|+++.|..++.++.
T Consensus 279 ~~~~~f~~d~~~L~it~~~~l 299 (305)
T 3dr2_A 279 ASNCTFDQAQQRLFITGGPCL 299 (305)
T ss_dssp CCEEEECTTSCEEEEEETTEE
T ss_pred eeEEEEeCCCCEEEEEcCCeE
Confidence 789999999998888877653
No 222
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.30 E-value=4e-09 Score=103.09 Aligned_cols=222 Identities=11% Similarity=0.005 Sum_probs=139.1
Q ss_pred ceEEEEECCC-CCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeCC
Q 008496 217 EVCACAWSPA-GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD 295 (563)
Q Consensus 217 ~V~~~~~sp~-~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~d 295 (563)
-..+.+|+|+ +.+++++..++.|.+|+..++.. .... ....+.+++|+++|+++++. .
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~--------------~~~~-----~~~~v~~i~~~~dg~l~v~~-~- 108 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRK--------------TVHA-----LPFMGSALAKISDSKQLIAS-D- 108 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEE--------------EEEE-----CSSCEEEEEEEETTEEEEEE-T-
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcE--------------EEEE-----CCCcceEEEEeCCCeEEEEE-C-
Confidence 3467899997 45667777788999999765321 0111 12468999999999887754 4
Q ss_pred CeEEEEEcCCceeEeeccC-----CCCEEEEEeCCCCCEEEEeeCC----CcEEEEECCCCceeEEeeecccCeEEEecC
Q 008496 296 GQARIWSTNGDLKCTLSKH-----KGPIFSLKWNKKGDYLLTGSCD----KTAIVWDVKTEEWKQQFEFHSGPTLDVDWR 366 (563)
Q Consensus 296 g~i~vw~~~~~~~~~~~~h-----~~~V~~l~~~~~~~~l~s~s~D----~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 366 (563)
..|.+|+..+.....+... ...+..++++|+|+.+++...+ +...||.+.+++..
T Consensus 109 ~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~~g~~~---------------- 172 (326)
T 2ghs_A 109 DGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVT---------------- 172 (326)
T ss_dssp TEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEE----------------
T ss_pred CCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEeCCcEE----------------
Confidence 4588999754333333221 2357889999999866654322 11222221122110
Q ss_pred CCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEE-EEeCCCcEEEEeCC--CC-ce-----eeeec
Q 008496 367 NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLA-SCSDDVTAKIWNMK--QD-KY-----VHDLR 437 (563)
Q Consensus 367 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~la-s~s~dg~i~iwd~~--~~-~~-----~~~~~ 437 (563)
.+..+....+.++|+|+++.++ +.+.++.|.+|++. ++ .. ...+.
T Consensus 173 --------------------------~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~ 226 (326)
T 2ghs_A 173 --------------------------KLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDST 226 (326)
T ss_dssp --------------------------EEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECT
T ss_pred --------------------------EeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECC
Confidence 0111112356899999998664 44567899999985 44 21 22222
Q ss_pred ccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEc-CCCCEEEEEeC
Q 008496 438 EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFS-PTGEYLASGSL 511 (563)
Q Consensus 438 ~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s-pdg~~lasgs~ 511 (563)
........+++.++|. +.++...++.|.+||. .++.+..+..+...+++++|+ |++..|..++.
T Consensus 227 ~~~~~p~gi~~d~~G~---------lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 227 GIKGGMDGSVCDAEGH---------IWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp TSSSEEEEEEECTTSC---------EEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEEB
T ss_pred CCCCCCCeeEECCCCC---------EEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecCCCCEEEEEec
Confidence 2334567788877764 4555556788999998 577777776666679999998 89877655443
No 223
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.28 E-value=7.9e-14 Score=139.07 Aligned_cols=256 Identities=15% Similarity=0.117 Sum_probs=137.8
Q ss_pred CCCEEEEEeCCCeEEEEEc-CCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeE--
Q 008496 285 EGTLLATGSYDGQARIWST-NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTL-- 361 (563)
Q Consensus 285 ~g~~l~sg~~dg~i~vw~~-~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~-- 361 (563)
++..+++++.||.|+.||. .|+....+.. +++.+..+..++..+++++.|+.|..||..+++.+..+..+.....
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~ 85 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA 85 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence 5678999999999999995 5777666654 4555555566777888889999999999988876655543321100
Q ss_pred EEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCC
Q 008496 362 DVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSK 441 (563)
Q Consensus 362 ~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~ 441 (563)
......+..+++++.++.++.++..+++.+..+..+. ...++|++..+++++.|+.|+.||.++++.+..+..+.
T Consensus 86 sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~- 160 (369)
T 2hz6_A 86 SPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD- 160 (369)
T ss_dssp CSCC-----CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCEEEEEE-
T ss_pred CceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc-
Confidence 0001123345566778899999998888776665543 23456788889999999999999999888665443211
Q ss_pred CEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEE-EEEcCCCCEE----EEEeCCCcEE
Q 008496 442 EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYS-LAFSPTGEYL----ASGSLDKSMH 516 (563)
Q Consensus 442 ~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~-l~~spdg~~l----asgs~dg~v~ 516 (563)
.....+.++. ..+. .++.++.||.|+.||..+|+.++... ...++.. ..++++|... +.+ ++.++
T Consensus 161 -~~~~~~~~~~----~~~~--~v~~~~~dg~v~a~d~~tG~~~W~~~-~~~pv~~~~~~~~dg~~~v~~~~~~--~~~l~ 230 (369)
T 2hz6_A 161 -YAASLPEDDV----DYKM--SHFVSNGDGLVVTVDSESGDVLWIQN-YASPVVAFYVWQREGLRKVMHINVA--VETLR 230 (369)
T ss_dssp -ECCBCCCCCT----TCCC--CEEEEETSCEEEEECTTTCCEEEEEE-CSSCEEEEEECTTSSCEEECCEEEE--HHHHH
T ss_pred -ccCccccCCc----cccc--eEEEECCCCEEEEEECCCCcEEEEec-CCCceEEEEEecCCceEeccceeec--cccee
Confidence 0011111110 0011 35568899999999999999998877 3455544 4567777542 222 34566
Q ss_pred EEecCCCe----eEEEEecCCCEEEEEEcC--CCCEEEEEECCCeEEEEEe
Q 008496 517 IWSLKEGK----IVKTYTGNGGIFEVCWNK--EGDKIAACFANHTVCVLDF 561 (563)
Q Consensus 517 iw~~~~~~----~~~~~~~~~~i~~l~w~~--~g~~la~~~~~~~v~v~~~ 561 (563)
.+|..+|+ .+..+...+.+. +| .+..|.++..+|.+.+++.
T Consensus 231 ~ld~~tG~~~~~~~W~~~~~~~~~----sp~~~~g~lyv~~~~G~l~al~~ 277 (369)
T 2hz6_A 231 YLTFMSGEVGRITKWKYPFPKETE----AKSKLTPTLYVGKYSTSLYASPS 277 (369)
T ss_dssp HHHHHHHHHHHHHTSCCCCCCHHH----HHHHSEEEECBEECSSCEECCEE
T ss_pred eeehhcCCcccceeeeeccCcccc----ccccccceEEEecccCCEEecCc
Confidence 66666665 433332222110 11 2345555666666665554
No 224
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.25 E-value=1.5e-08 Score=101.17 Aligned_cols=303 Identities=9% Similarity=0.058 Sum_probs=181.8
Q ss_pred CCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeeccc---ccCCCCeEEEEECCCCCEEEEEeCCCeEEEEE
Q 008496 226 AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRT---NEKSKDVTTLDWNGEGTLLATGSYDGQARIWS 302 (563)
Q Consensus 226 ~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~ 302 (563)
.+..|+.++.++.+..+|..+++.... .. ..... ......+.+. ...++..++.++.++.+..+|
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~----------~~-~~~~~~~~~~~~~~~~~~-~~~~~~~v~v~~~~g~l~a~d 119 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWS----------VS-LAEKDGWFSKEPALLSGG-VTVSGGHVYIGSEKAQVYALN 119 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEE----------EE-CCC---CCSCCCCCEEEE-EEEETTEEEEEETTSEEEEEE
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeee----------ec-CccccccccccCcccccC-ceEeCCEEEEEcCCCEEEEEE
Confidence 356777777888999999877653210 00 00000 0001122211 112356788889999999999
Q ss_pred cC-CceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCe-----EEEecCCCceEEEEeC
Q 008496 303 TN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPT-----LDVDWRNNVSFATSST 376 (563)
Q Consensus 303 ~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 376 (563)
.. |+................. .+..++.++.++.+..+|..+++....+....... ..... .+..+..+..
T Consensus 120 ~~tG~~~W~~~~~~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~-~~~~v~~g~~ 196 (376)
T 3q7m_A 120 TSDGTVAWQTKVAGEALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTT-AFGAAVVGGD 196 (376)
T ss_dssp TTTCCEEEEEECSSCCCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEE-ETTEEEECCT
T ss_pred CCCCCEEEEEeCCCceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEE-ECCEEEEEcC
Confidence 75 6665544332211111111 24578888899999999999998776554422110 00011 1345666777
Q ss_pred CCeEEEEEcCCCcceeeecCCCc--c--ee---EEEECC--CCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEE
Q 008496 377 DNMIYVCKIGENRPIKTFAGHQG--E--VN---CVKWDP--TGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIR 447 (563)
Q Consensus 377 d~~i~~~~~~~~~~~~~~~~h~~--~--i~---~~~~~~--~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~ 447 (563)
++.++.++..+++.+..+..... . +. .+...| .+..+..++.++.+..+|..+++.+..... .....+.
T Consensus 197 ~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~--~~~~~~~ 274 (376)
T 3q7m_A 197 NGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKREL--GSVNDFI 274 (376)
T ss_dssp TTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECC--CCEEEEE
T ss_pred CCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccC--CCCCCce
Confidence 88999999887776554432110 0 00 000111 245677788899999999999887655432 2233333
Q ss_pred EccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCC-CCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeE
Q 008496 448 WSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH-REPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIV 526 (563)
Q Consensus 448 ~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h-~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~ 526 (563)
.. .+ .+..++.++.|..+|..+++.++..... ...+..... .+..|..++.+|.|.++|..+|+++
T Consensus 275 ~~-~~----------~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~ 341 (376)
T 3q7m_A 275 VD-GN----------RIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFV 341 (376)
T ss_dssp EE-TT----------EEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEE
T ss_pred EE-CC----------EEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEE
Confidence 32 11 4566778999999999999998877522 222222233 2567888899999999999999998
Q ss_pred EEEec-CCCEEE-EEEcCCCCEEEEEECCCeEEEEE
Q 008496 527 KTYTG-NGGIFE-VCWNKEGDKIAACFANHTVCVLD 560 (563)
Q Consensus 527 ~~~~~-~~~i~~-l~w~~~g~~la~~~~~~~v~v~~ 560 (563)
..+.. ...+.. +.. .+..|.++..+|.+..||
T Consensus 342 ~~~~~~~~~~~~~~~~--~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 342 AQQKVDSSGFQTEPVA--ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp EEEECCTTCBCSCCEE--ETTEEEEEBTTSCEEEEE
T ss_pred EEEecCCCcceeCCEE--ECCEEEEEeCCCEEEEEe
Confidence 87765 233321 111 256788888899998886
No 225
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.25 E-value=4.8e-10 Score=110.50 Aligned_cols=269 Identities=12% Similarity=0.063 Sum_probs=159.5
Q ss_pred CceEEEEECCCCCEEEEee--CCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEe
Q 008496 216 SEVCACAWSPAGSLLASGS--GDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS 293 (563)
Q Consensus 216 ~~V~~~~~sp~~~~latgs--~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~ 293 (563)
..+..++++|+|+++++.. .++.++||.+.++... .+.........+...+..++++++|+++++-.
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-----------~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~ 85 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-----------PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDN 85 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-----------ESCCCCSSCCCCCSCEEEEEECSSSEEEEEEC
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-----------cCCCcccCcccceeEeeEEEEcCCCcEEEEcC
Confidence 5688999999999998864 2344777876532210 00000001112345799999999998777654
Q ss_pred C-----CCeEEEEEcC-CceeEeecc------CCCCEEEEEeCCCCCEE-EEee---CCCcEEEEECCCCceeEEeeecc
Q 008496 294 Y-----DGQARIWSTN-GDLKCTLSK------HKGPIFSLKWNKKGDYL-LTGS---CDKTAIVWDVKTEEWKQQFEFHS 357 (563)
Q Consensus 294 ~-----dg~i~vw~~~-~~~~~~~~~------h~~~V~~l~~~~~~~~l-~s~s---~D~~v~iwd~~~~~~~~~~~~~~ 357 (563)
. ++.|.+||.. +++...+.. +...+..+++++++..+ ++.. .++.|.+||+.+++....+..|.
T Consensus 86 g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~ 165 (343)
T 2qe8_A 86 GNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYP 165 (343)
T ss_dssp HHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCT
T ss_pred CCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCC
Confidence 4 5789999976 554544432 22346789999865454 5544 67899999998887655443221
Q ss_pred cCeE-EEec-CCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCC-----
Q 008496 358 GPTL-DVDW-RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD----- 430 (563)
Q Consensus 358 ~~~~-~~~~-~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~----- 430 (563)
.... ...+ .+...|...+.++.+..| ...++.++|+|+++.|+.+..++. ++|.+...
T Consensus 166 ~~~~~~~~~~~~g~~~~~~~~~g~~~~~--------------~~~~~gia~s~dg~~ly~~~~~~~-~l~~~~~~~~~~~ 230 (343)
T 2qe8_A 166 GIAPEDIDLVIDGVPVQIGQPDGTVIRP--------------HLGVNGIVLDAENEWLYLSPMHST-SMYRIKSADLSNL 230 (343)
T ss_dssp TTSCCSCCCEETTEECBEECTTSCEECC--------------CCCEEEEEECTTSCEEEEEESSCS-EEEEEEHHHHTCT
T ss_pred cccccccceeECCEEEEeccCCCceece--------------ecccceeEeccCCCEEEEEeCCCC-eEEEEEHHHhcCC
Confidence 1100 0000 111222223333333221 123678999999998888777653 45543211
Q ss_pred c-----eee--eecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecC-CCCCEEEEEEcCC
Q 008496 431 K-----YVH--DLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG-HREPVYSLAFSPT 502 (563)
Q Consensus 431 ~-----~~~--~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-h~~~i~~l~~spd 502 (563)
. ... ...++......++++++|. ++++...++.|.+||..+++....... +.....+++|+++
T Consensus 231 ~~~~~~~~~~~~~~g~~g~pdgia~d~~G~---------l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~ 301 (343)
T 2qe8_A 231 QLTDAELGSKIERYSEKPICDGISIDKDHN---------IYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSD 301 (343)
T ss_dssp TCCHHHHHTTCEEEEECCSCSCEEECTTCC---------EEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTT
T ss_pred CCChhhhhcceEecccCCCCceEEECCCCC---------EEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCC
Confidence 0 000 0112223344567777653 667778889999999866764333322 2345899999999
Q ss_pred CCEEEEEeCCCcEEEEe
Q 008496 503 GEYLASGSLDKSMHIWS 519 (563)
Q Consensus 503 g~~lasgs~dg~v~iw~ 519 (563)
|+++++.+..+.+.+|.
T Consensus 302 g~l~v~~~~~~~~~~f~ 318 (343)
T 2qe8_A 302 GYLYFDCNQLHHSAPLN 318 (343)
T ss_dssp SCEEEEECCGGGSGGGB
T ss_pred CcEEEEeCccccccccc
Confidence 99888877666555444
No 226
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.24 E-value=6.2e-09 Score=111.89 Aligned_cols=254 Identities=13% Similarity=0.141 Sum_probs=160.5
Q ss_pred CCCEEEEEeCCCeEEEEEc-CCceeEeeccC-C----CCEEEEEeCCCCCEEEEeeC------CCcEEEEECCCCceeEE
Q 008496 285 EGTLLATGSYDGQARIWST-NGDLKCTLSKH-K----GPIFSLKWNKKGDYLLTGSC------DKTAIVWDVKTEEWKQQ 352 (563)
Q Consensus 285 ~g~~l~sg~~dg~i~vw~~-~~~~~~~~~~h-~----~~V~~l~~~~~~~~l~s~s~------D~~v~iwd~~~~~~~~~ 352 (563)
++..+++++.|+.+..+|. .|+.+..+..+ . ..+.+--.- .+..++.++. ++.|..+|..+++.+-.
T Consensus 127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~ 205 (677)
T 1kb0_A 127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERKWR 205 (677)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcEEEE
Confidence 3567888899999999997 57776665543 1 111110000 2345665553 78999999999998766
Q ss_pred eeecccC----------------------------------eEEEecCCCceEEEEeCC-------------------Ce
Q 008496 353 FEFHSGP----------------------------------TLDVDWRNNVSFATSSTD-------------------NM 379 (563)
Q Consensus 353 ~~~~~~~----------------------------------~~~~~~~~~~~~~~~~~d-------------------~~ 379 (563)
+...... ...++...+ .+..+..+ +.
T Consensus 206 ~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~-~vy~~~~~~~~w~~~~~~~~~gd~~~~~s 284 (677)
T 1kb0_A 206 WFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELN-TMYVGTGNGSPWSHKVRSPKGGDNLYLAS 284 (677)
T ss_dssp EESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTT-EEEEECCCEESSCHHHHSTTCCCCTTTTE
T ss_pred eccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCC-EEEEECCCCccccCCCCCccCCCCeeeEE
Confidence 6542211 011122222 33333332 24
Q ss_pred EEEEEcCCCcceeeecC--CC-------cceeEEEECCCC---CEEEEEeCCCcEEEEeCCCCceeeeecccCC------
Q 008496 380 IYVCKIGENRPIKTFAG--HQ-------GEVNCVKWDPTG---SLLASCSDDVTAKIWNMKQDKYVHDLREHSK------ 441 (563)
Q Consensus 380 i~~~~~~~~~~~~~~~~--h~-------~~i~~~~~~~~~---~~las~s~dg~i~iwd~~~~~~~~~~~~~~~------ 441 (563)
|+.+|..+++.+-.+.. |. .....+....+| +.++.++.+|.+.++|..+++.+..+.....
T Consensus 285 v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~ 364 (677)
T 1kb0_A 285 IVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGY 364 (677)
T ss_dssp EEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEE
T ss_pred EEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCccccc
Confidence 88888888877665542 21 112223333467 6789999999999999999988765442210
Q ss_pred -----CEE------------------------EEEEccCCCCCCCCCCcEEEEEEe------------------------
Q 008496 442 -----EIY------------------------TIRWSPTGSGTNNPNQQLILASAS------------------------ 468 (563)
Q Consensus 442 -----~i~------------------------~~~~~p~~~~~~~~~~~~~l~s~s------------------------ 468 (563)
++. .++++|+ ..++++...
T Consensus 365 d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~--------~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~ 436 (677)
T 1kb0_A 365 DKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQ--------TGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQS 436 (677)
T ss_dssp CTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETT--------TTEEEEEEEECCCEEEECTTCCTTCCCTTSTTG
T ss_pred CCCCceeeccccCcCCCccEECcCcccccCCCCceEcCC--------CCEEEEeChhcceeeeccccccccccccccccc
Confidence 010 1233332 223332211
Q ss_pred ------------------CCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEe
Q 008496 469 ------------------FDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYT 530 (563)
Q Consensus 469 ------------------~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~ 530 (563)
..|.|..||+.+++.++.+. +..++....++.++..++.|+.||.+++||.++|+++..+.
T Consensus 437 ~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~-~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~ 515 (677)
T 1kb0_A 437 GTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVE-HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAP 515 (677)
T ss_dssp GGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEE-ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred ccccccccccccccCCCCCccEEEEEeCCCCcEEeecC-CCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeee
Confidence 12789999999999998886 34455666677888899999999999999999999999987
Q ss_pred cCCCE--EEEEEcCCCCEEEE
Q 008496 531 GNGGI--FEVCWNKEGDKIAA 549 (563)
Q Consensus 531 ~~~~i--~~l~w~~~g~~la~ 549 (563)
...++ .-+.|..+|+.+++
T Consensus 516 ~~~~~~~~p~~y~~~G~~~v~ 536 (677)
T 1kb0_A 516 TGTGVVAAPSTYMVDGRQYVS 536 (677)
T ss_dssp CSSCCCSCCEEEEETTEEEEE
T ss_pred CCCCcccCCEEEEeCCEEEEE
Confidence 65443 34677889974443
No 227
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.23 E-value=4.6e-09 Score=113.14 Aligned_cols=303 Identities=11% Similarity=0.119 Sum_probs=177.4
Q ss_pred CCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccc-cC-CCCe-EEEEECCCCCEEEEEeCCCeEEEEEc
Q 008496 227 GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTN-EK-SKDV-TTLDWNGEGTLLATGSYDGQARIWST 303 (563)
Q Consensus 227 ~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~V-~~l~~s~~g~~l~sg~~dg~i~vw~~ 303 (563)
+..|+.++.++.+.-+|..+|+..-..... ...... .. ...+ ..+.. .+..+++++.|+.+..+|.
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~---------~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa 138 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQ---------SDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDA 138 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCC---------CCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEET
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCC---------CCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEEC
Confidence 566677777888888888776532111000 000000 00 0000 00111 3567888999999999997
Q ss_pred -CCceeEeeccC--CCCEEEEEeCC---CCCEEEEee------CCCcEEEEECCCCceeEEeeecc-cC-----------
Q 008496 304 -NGDLKCTLSKH--KGPIFSLKWNK---KGDYLLTGS------CDKTAIVWDVKTEEWKQQFEFHS-GP----------- 359 (563)
Q Consensus 304 -~~~~~~~~~~h--~~~V~~l~~~~---~~~~l~s~s------~D~~v~iwd~~~~~~~~~~~~~~-~~----------- 359 (563)
.|+++..+... ......+..+| ++ .++.++ .++.|..||..+++.+-.+.... .+
T Consensus 139 ~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~ 217 (689)
T 1yiq_A 139 KTGQRAWSVDTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEI 217 (689)
T ss_dssp TTCCEEEEEECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHH
T ss_pred CCCCEeeeecCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccc
Confidence 46665544321 11111111122 34 455443 37899999999999776654211 00
Q ss_pred ---------------------eEEEecCCCceEEEEeCCC-------------------eEEEEEcCCCcceeeecC--C
Q 008496 360 ---------------------TLDVDWRNNVSFATSSTDN-------------------MIYVCKIGENRPIKTFAG--H 397 (563)
Q Consensus 360 ---------------------~~~~~~~~~~~~~~~~~d~-------------------~i~~~~~~~~~~~~~~~~--h 397 (563)
...++-. ...+..+..++ .|+.+|..+++.+-.+.. |
T Consensus 218 ~~~~~~g~~w~~~~~g~~~w~~~~~d~~-~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~ 296 (689)
T 1yiq_A 218 AAKTWFGDAYVEQGGGGTAWDSFAYDPE-LNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPG 296 (689)
T ss_dssp HHTTCCSSTHHHHCEECCCCSCEEEETT-TTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTT
T ss_pred cccccCCceeeecCCCCccccceeEcCC-CCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCc
Confidence 0111111 23344444443 488999988887766653 2
Q ss_pred C-------cceeEEEECCCCC---EEEEEeCCCcEEEEeCCCCceeeeecccC-CCEE----------------------
Q 008496 398 Q-------GEVNCVKWDPTGS---LLASCSDDVTAKIWNMKQDKYVHDLREHS-KEIY---------------------- 444 (563)
Q Consensus 398 ~-------~~i~~~~~~~~~~---~las~s~dg~i~iwd~~~~~~~~~~~~~~-~~i~---------------------- 444 (563)
. ..+.......+|+ .++.++.+|.++++|..+++.+....... ....
T Consensus 297 d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~ 376 (689)
T 1yiq_A 297 DAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNG 376 (689)
T ss_dssp CCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSS
T ss_pred ccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCC
Confidence 1 1222222233565 78899999999999999998764322110 0000
Q ss_pred ----------------EEEEccCCCCCCCCCCcEEEEEEe----------------------------------------
Q 008496 445 ----------------TIRWSPTGSGTNNPNQQLILASAS---------------------------------------- 468 (563)
Q Consensus 445 ----------------~~~~~p~~~~~~~~~~~~~l~s~s---------------------------------------- 468 (563)
.++++|. ..++++...
T Consensus 377 ~~~~~~p~~~Gg~~w~~~a~dp~--------~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~ 448 (689)
T 1yiq_A 377 KRNLVTPAFWGAHDWQPMSYNPD--------TGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLE 448 (689)
T ss_dssp SCEEESSCTTCSSCSSCCEEETT--------TTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHH
T ss_pred CeeEeCCCcccccCCCcceECCC--------CCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCC
Confidence 0222222 222222111
Q ss_pred ----CCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEecCCCE--EEEEEcC
Q 008496 469 ----FDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGI--FEVCWNK 542 (563)
Q Consensus 469 ----~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~~~i--~~l~w~~ 542 (563)
.+|.|+.||+.+|+.++.+..+ .++....++..|.+++.|+.||.|+.||.++|+++..+....++ .-+.|..
T Consensus 449 ~~~~~~g~l~A~D~~tG~~~W~~~~~-~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~ 527 (689)
T 1yiq_A 449 MAKSWSGKLIAWDPVKQQAAWEVPYV-TIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSV 527 (689)
T ss_dssp HHTTCEEEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEE
T ss_pred CCCCcceeEEEEECCCCCeEeEccCC-CCccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEE
Confidence 1488999999999999988754 34444566778889999999999999999999999998765443 3477889
Q ss_pred CCC-EEEEEE
Q 008496 543 EGD-KIAACF 551 (563)
Q Consensus 543 ~g~-~la~~~ 551 (563)
+|+ ++++..
T Consensus 528 ~G~qyv~~~~ 537 (689)
T 1yiq_A 528 DGEQYVTFMA 537 (689)
T ss_dssp TTEEEEEEEE
T ss_pred CCEEEEEEEe
Confidence 997 444443
No 228
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.21 E-value=1e-09 Score=107.23 Aligned_cols=295 Identities=14% Similarity=0.078 Sum_probs=182.1
Q ss_pred ECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeCCCeEEEEE
Q 008496 223 WSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWS 302 (563)
Q Consensus 223 ~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~ 302 (563)
...++. |..|+.++.+..|| .++..... .. .....+.++...++|.++ .++.+ +..++
T Consensus 27 ~d~~g~-l~v~t~~~~l~~~d-~~g~~~~~-------------~~----~~~~~~~~~~~~~~g~l~-v~t~~--l~~~d 84 (330)
T 3hxj_A 27 LAKNGT-IYLGSSNKNLYAIN-TDGSVKWF-------------FK----SGEIIECRPSIGKDGTIY-FGSDK--VYAIN 84 (330)
T ss_dssp ECTTSC-EECSSTTTTTEEEC-TTSCEEES-------------SC----GGGEEEECCEETTTTEEC-CSSCE--EEEEC
T ss_pred EccCCe-EEEEcCCCEEEEEC-CCCcEEEE-------------Ee----cCCCcccceEEecCCcEE-EecCc--EEEEC
Confidence 334444 45566778888888 55432110 00 011234566666677544 44444 88888
Q ss_pred cCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCCceEEEEeCCCeEEE
Q 008496 303 TNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYV 382 (563)
Q Consensus 303 ~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~ 382 (563)
.++.....+............. +..+..++.++.+..+|.. ++....+......+..+....+..+..++.++.++.
T Consensus 85 ~~g~~~~~~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~l~vgt~~~~l~~ 161 (330)
T 3hxj_A 85 PDGTEKWRFDTKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGTIYVGSNDNYLYA 161 (330)
T ss_dssp CCGGGGGGSCC-----CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSCEEEECTTSEEEE
T ss_pred CCCcEEEEEECCCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCEEEEEcCCCEEEE
Confidence 7665543333222222222222 5567888889999999988 665554443333333333333455666777889999
Q ss_pred EEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcE
Q 008496 383 CKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQL 462 (563)
Q Consensus 383 ~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~ 462 (563)
++.. ++.+..+......+.++...+++.+.+.. +.+..|| .+++....+......+.++...+++.
T Consensus 162 ~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t---~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~--------- 227 (330)
T 3hxj_A 162 INPD-GTEKWRFKTNDAITSAASIGKDGTIYFGS---DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGT--------- 227 (330)
T ss_dssp ECTT-SCEEEEEECSSCCCSCCEECTTCCEEEES---SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSC---------
T ss_pred ECCC-CCEeEEEecCCCceeeeEEcCCCEEEEEe---CEEEEEC-CCCcEEEEEccCCcceeceEECCCCe---------
Confidence 9887 66655555555667788888888866544 7899999 66666555554445566666665542
Q ss_pred EEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEecC-CCEEEEEEc
Q 008496 463 ILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN-GGIFEVCWN 541 (563)
Q Consensus 463 ~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~-~~i~~l~w~ 541 (563)
|..++.++.|..+|. +++.+..+......+.++.+.++|. |..|+.+|.|..+|. +++.+..+... ..+.++..+
T Consensus 228 -l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d 303 (330)
T 3hxj_A 228 -IYVTSLDGHLYAINP-DGTEKWRFKTGKRIESSPVIGNTDT-IYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVID 303 (330)
T ss_dssp -EEEEETTTEEEEECT-TSCEEEEEECSSCCCSCCEECTTSC-EEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEEC
T ss_pred -EEEEcCCCeEEEECC-CCCEeEEeeCCCCccccceEcCCCe-EEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEc
Confidence 455677888988874 5666666654444445566666665 556778888999996 77777766543 335567777
Q ss_pred CCCCEEEEEECCCeEEEEEe
Q 008496 542 KEGDKIAACFANHTVCVLDF 561 (563)
Q Consensus 542 ~~g~~la~~~~~~~v~v~~~ 561 (563)
++|+ |.++..+|.+.+...
T Consensus 304 ~~g~-l~~gt~~G~~~~~~~ 322 (330)
T 3hxj_A 304 ENGT-IYFGTRNGKFYALFN 322 (330)
T ss_dssp TTCC-EEEECTTSCEEEEEC
T ss_pred CCCE-EEEEcCCCeEEEEec
Confidence 8886 455778888887654
No 229
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.21 E-value=1.8e-09 Score=115.98 Aligned_cols=269 Identities=10% Similarity=0.042 Sum_probs=174.3
Q ss_pred CCEEEEEeCCCeEEEEEc-CCceeEeeccCCC----------CE-EEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEe
Q 008496 286 GTLLATGSYDGQARIWST-NGDLKCTLSKHKG----------PI-FSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF 353 (563)
Q Consensus 286 g~~l~sg~~dg~i~vw~~-~~~~~~~~~~h~~----------~V-~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~ 353 (563)
+..+++++.++.|..+|. .|+.+..+..... .+ .++.. .+..++.++.|+.|..+|..+++.+-.+
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 154 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVWHQ 154 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEeee
Confidence 445666667778888885 3555444332211 00 11222 4568888999999999999999987766
Q ss_pred eec-c----cCeE-EEecCCCceEEEEe-----CCCeEEEEEcCCCcceeeecCCCc-----------------------
Q 008496 354 EFH-S----GPTL-DVDWRNNVSFATSS-----TDNMIYVCKIGENRPIKTFAGHQG----------------------- 399 (563)
Q Consensus 354 ~~~-~----~~~~-~~~~~~~~~~~~~~-----~d~~i~~~~~~~~~~~~~~~~h~~----------------------- 399 (563)
... . ..+. .....++..++.++ .++.|+.+|..+++.+-.+.....
T Consensus 155 ~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~ 234 (677)
T 1kb0_A 155 NTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGK 234 (677)
T ss_dssp ETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGC
T ss_pred cCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCc
Confidence 654 1 0010 00011333333333 268999999988877655532111
Q ss_pred ---------ceeEEEECCCCCEEEEEeCCC-------------------cEEEEeCCCCceeeeecc--cC-------CC
Q 008496 400 ---------EVNCVKWDPTGSLLASCSDDV-------------------TAKIWNMKQDKYVHDLRE--HS-------KE 442 (563)
Q Consensus 400 ---------~i~~~~~~~~~~~las~s~dg-------------------~i~iwd~~~~~~~~~~~~--~~-------~~ 442 (563)
....++++|++.+|..++.++ .|..+|.++++.+-.++. |. ..
T Consensus 235 ~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~ 314 (677)
T 1kb0_A 235 WWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQP 314 (677)
T ss_dssp HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred eeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCC
Confidence 113578899999888887764 489999999988765543 21 01
Q ss_pred EEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCC-----------CCE-----------------
Q 008496 443 IYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHR-----------EPV----------------- 494 (563)
Q Consensus 443 i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~-----------~~i----------------- 494 (563)
..-+....+|. ...+++.++.+|.|+++|..+|+.+....-.. .++
T Consensus 315 p~l~~~~~dG~------~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~ 388 (677)
T 1kb0_A 315 MILADIKIAGK------PRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPG 388 (677)
T ss_dssp CEEEEEEETTE------EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSC
T ss_pred cEEEecccCCc------EeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcC
Confidence 11111112221 01367889999999999999999987764211 111
Q ss_pred -------EEEEEcCCCCEEEEEeC-------------------------------------------CCcEEEEecCCCe
Q 008496 495 -------YSLAFSPTGEYLASGSL-------------------------------------------DKSMHIWSLKEGK 524 (563)
Q Consensus 495 -------~~l~~spdg~~lasgs~-------------------------------------------dg~v~iw~~~~~~ 524 (563)
..++|+|++.++.+... .|.|..||+.+|+
T Consensus 389 ~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~ 468 (677)
T 1kb0_A 389 PYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQK 468 (677)
T ss_dssp TTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTE
T ss_pred cccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCc
Confidence 15789999888776543 2789999999999
Q ss_pred eEEEEecCCCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496 525 IVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR 562 (563)
Q Consensus 525 ~~~~~~~~~~i~~l~w~~~g~~la~~~~~~~v~v~~~~ 562 (563)
++..+.....+.......+|..++++..++.+.+||.+
T Consensus 469 ~~W~~~~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~ 506 (677)
T 1kb0_A 469 AAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAA 506 (677)
T ss_dssp EEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETT
T ss_pred EEeecCCCCCCcCcceEeCCCEEEEECCCCcEEEEECC
Confidence 99888765555555677788899999899999999864
No 230
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.19 E-value=3.4e-09 Score=114.13 Aligned_cols=269 Identities=11% Similarity=0.054 Sum_probs=173.7
Q ss_pred CCEEEEEeCCCeEEEEEc-CCceeEeeccCCC----------CE-EEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEe
Q 008496 286 GTLLATGSYDGQARIWST-NGDLKCTLSKHKG----------PI-FSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF 353 (563)
Q Consensus 286 g~~l~sg~~dg~i~vw~~-~~~~~~~~~~h~~----------~V-~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~ 353 (563)
+..+++++.++.|..+|. .|+.+..+..+.. .+ .++. ..+..++.++.|+.|..+|..+++.+-.+
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~v~v~~~dg~l~AlDa~TG~~~W~~ 147 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVA--VWKGKVYVGVLDGRLEAIDAKTGQRAWSV 147 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCE--EETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccE--EECCEEEEEccCCEEEEEECCCCCEeeee
Confidence 456677777888888886 4666555432211 00 0111 13567888999999999999999877665
Q ss_pred eec-c-cCeEEE----ecCCCceEEEEe-----CCCeEEEEEcCCCcceeeecCC-------------------------
Q 008496 354 EFH-S-GPTLDV----DWRNNVSFATSS-----TDNMIYVCKIGENRPIKTFAGH------------------------- 397 (563)
Q Consensus 354 ~~~-~-~~~~~~----~~~~~~~~~~~~-----~d~~i~~~~~~~~~~~~~~~~h------------------------- 397 (563)
... . .....+ ...++..++.++ .++.|+.+|..+++.+-.+..-
T Consensus 148 ~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w 227 (689)
T 1yiq_A 148 DTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAY 227 (689)
T ss_dssp ECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTH
T ss_pred cCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCcee
Confidence 542 1 000000 011333333332 3688999999888766554310
Q ss_pred ------CcceeEEEECCCCCEEEEEeCCCc-------------------EEEEeCCCCceeeeecc--cC-------CCE
Q 008496 398 ------QGEVNCVKWDPTGSLLASCSDDVT-------------------AKIWNMKQDKYVHDLRE--HS-------KEI 443 (563)
Q Consensus 398 ------~~~i~~~~~~~~~~~las~s~dg~-------------------i~iwd~~~~~~~~~~~~--~~-------~~i 443 (563)
......++++|+..+|+.++.++. |..||.++++.+-.++. |. .+.
T Consensus 228 ~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~ 307 (689)
T 1yiq_A 228 VEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHM 307 (689)
T ss_dssp HHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCE
T ss_pred eecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCc
Confidence 011135788999899999888764 99999999998766543 21 111
Q ss_pred EEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCC-CC-----------------------------
Q 008496 444 YTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHR-EP----------------------------- 493 (563)
Q Consensus 444 ~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~-~~----------------------------- 493 (563)
.......+|. ...+++.++.+|.++++|.++|+.+....-.. ..
T Consensus 308 ~l~d~~~~G~------~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~ 381 (689)
T 1yiq_A 308 ILAELPIDGK------PRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLV 381 (689)
T ss_dssp EEEEEEETTE------EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEE
T ss_pred EEEeeccCCc------EEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEe
Confidence 1111111221 01267889999999999999999885432110 00
Q ss_pred ---------EEEEEEcCCCCEEEEEeC---------------------------------------------CCcEEEEe
Q 008496 494 ---------VYSLAFSPTGEYLASGSL---------------------------------------------DKSMHIWS 519 (563)
Q Consensus 494 ---------i~~l~~spdg~~lasgs~---------------------------------------------dg~v~iw~ 519 (563)
-..++|+|+..++++.+. +|.|..||
T Consensus 382 ~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D 461 (689)
T 1yiq_A 382 TPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWD 461 (689)
T ss_dssp SSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEE
T ss_pred CCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEE
Confidence 112789998887776532 37899999
Q ss_pred cCCCeeEEEEecCCCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496 520 LKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR 562 (563)
Q Consensus 520 ~~~~~~~~~~~~~~~i~~l~w~~~g~~la~~~~~~~v~v~~~~ 562 (563)
+.+|+++..+.....+..-.+...|..|++|..|+.+.+||.+
T Consensus 462 ~~tG~~~W~~~~~~~~~~g~~~tagglvf~gt~dg~l~a~D~~ 504 (689)
T 1yiq_A 462 PVKQQAAWEVPYVTIFNGGTLSTAGNLVFEGSADGRVIAYAAD 504 (689)
T ss_dssp TTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETT
T ss_pred CCCCCeEeEccCCCCccCccceECCCEEEEECCCCcEEEEECC
Confidence 9999999888765555444667788899999999999999864
No 231
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.19 E-value=1.3e-09 Score=107.41 Aligned_cols=246 Identities=7% Similarity=-0.060 Sum_probs=155.5
Q ss_pred EEEECCCCCEEEEEe----------CCCeEEEEEcCC-ceeEeeccC-------CCCEEEEEeCCCCCEEEEeeC--CCc
Q 008496 279 TLDWNGEGTLLATGS----------YDGQARIWSTNG-DLKCTLSKH-------KGPIFSLKWNKKGDYLLTGSC--DKT 338 (563)
Q Consensus 279 ~l~~s~~g~~l~sg~----------~dg~i~vw~~~~-~~~~~~~~h-------~~~V~~l~~~~~~~~l~s~s~--D~~ 338 (563)
.+.++|||++++++. .++.|.+||... +...++... ......+.++|+|++++.+.. ...
T Consensus 69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~ 148 (368)
T 1mda_H 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA 148 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCe
Confidence 699999999998886 368899999764 455555322 122457899999999998874 467
Q ss_pred EEE--EECCCCceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCC-----Cccee----eecCCCcceeEEEEC
Q 008496 339 AIV--WDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGE-----NRPIK----TFAGHQGEVNCVKWD 407 (563)
Q Consensus 339 v~i--wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~-----~~~~~----~~~~h~~~i~~~~~~ 407 (563)
+.+ +|+.+ +..+.... . ..+.......|++.+.|+.+.+.++.. ++.+. .+.-...+. . .
T Consensus 149 v~V~~iD~~t---v~~i~v~~-~-~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~ 219 (368)
T 1mda_H 149 AGLSVPGASD---DQLTKSAS-C-FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-A 219 (368)
T ss_dssp EEEEETTTEE---EEEEECSS-C-CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-E
T ss_pred EEEEEEchhh---ceEEECCC-c-eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-c
Confidence 888 99877 33332211 1 112223344566667788877777765 22211 011112222 3 5
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCc--eeeeecc-------cC---CCEEEEEEccCCCCCCCCCCcEEEEEEe---C---
Q 008496 408 PTGSLLASCSDDVTAKIWNMKQDK--YVHDLRE-------HS---KEIYTIRWSPTGSGTNNPNQQLILASAS---F--- 469 (563)
Q Consensus 408 ~~~~~las~s~dg~i~iwd~~~~~--~~~~~~~-------~~---~~i~~~~~~p~~~~~~~~~~~~~l~s~s---~--- 469 (563)
+++..++..+. +.+.+.|..+.. .+..+.. +. .....+.++|++. .++++.. .
T Consensus 220 ~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~--------~lyV~~~~~~~~~~ 290 (368)
T 1mda_H 220 NYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTD--------GIMILTVEHSRSCL 290 (368)
T ss_dssp TTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTT--------EEEEEEEECSSCTT
T ss_pred ccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCC--------EEEEEeccccCccc
Confidence 55665555556 899999986432 2222211 00 1111156777764 2333333 2
Q ss_pred --CCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCC-EEEEEe-CCCcEEEEecCCCeeEEEEecCCCEEEEEEcCC
Q 008496 470 --DSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGE-YLASGS-LDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKE 543 (563)
Q Consensus 470 --dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~-~lasgs-~dg~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~ 543 (563)
++.+.++|+.+++.+..+.... ....++|+|||+ .+++.. .++.|.++|+.++++++++........+++.+.
T Consensus 291 ~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~~P~~i~~~~~ 367 (368)
T 1mda_H 291 AAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGPESLSVQNE 367 (368)
T ss_dssp SCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSCCCEEECCCC
T ss_pred ccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCCCCCEEEeecC
Confidence 2356699999999888775433 468899999997 456666 599999999999999999887666667766543
No 232
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.15 E-value=2.7e-11 Score=120.63 Aligned_cols=203 Identities=13% Similarity=0.093 Sum_probs=119.8
Q ss_pred CCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEec-CCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcc-ee-
Q 008496 326 KGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW-RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGE-VN- 402 (563)
Q Consensus 326 ~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~-i~- 402 (563)
++..+++++.|+.|..||..+++.+-.+.. +++..... .++..+++++.|+.|+.|+..+++.+..+..+... +.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~ 85 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA 85 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence 467899999999999999999998877665 33332222 23446677789999999999777665555433211 11
Q ss_pred EEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe
Q 008496 403 CVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK 482 (563)
Q Consensus 403 ~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~ 482 (563)
+..+. .+..|++|+.|+.++.||..+++.+..+..+.. ..++|.+ ..+++++.|+.|+.||.++|+
T Consensus 86 sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~----~~~~p~~---------~~v~~~~~dg~v~a~d~~tG~ 151 (369)
T 2hz6_A 86 SPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFA----DSLSPST---------SLLYLGRTEYTITMYDTKTRE 151 (369)
T ss_dssp CSCC------CCCCEEEEEEEEECCC-----------------------------------EEEEEEEEEEECCCSSSSS
T ss_pred CceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCCc----ccccccC---------CEEEEEecCCEEEEEECCCCC
Confidence 11111 345677888999999999999988766654431 2334432 256778889999999999998
Q ss_pred EEEEecCCCCCEEEEEEcCCC---CEEEEEeCCCcEEEEecCCCeeEEEEecCCCEE-EEEEcCCCCE
Q 008496 483 LLYSLNGHREPVYSLAFSPTG---EYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIF-EVCWNKEGDK 546 (563)
Q Consensus 483 ~~~~~~~h~~~i~~l~~spdg---~~lasgs~dg~v~iw~~~~~~~~~~~~~~~~i~-~l~w~~~g~~ 546 (563)
.++.+..+. ....++++++ ..+++++.||.|..||..+|+++..+.....+. ...++++|..
T Consensus 152 ~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~pv~~~~~~~~dg~~ 217 (369)
T 2hz6_A 152 LRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYASPVVAFYVWQREGLR 217 (369)
T ss_dssp CCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECSSCEEEEEECTTSSCE
T ss_pred EEEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCCCceEEEEEecCCceE
Confidence 876654221 1223344432 567778999999999999999998887655554 3456667653
No 233
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.05 E-value=4.2e-07 Score=85.77 Aligned_cols=248 Identities=11% Similarity=-0.000 Sum_probs=149.8
Q ss_pred CEEEEEeCCCeEEEEEcCCceeE------eeccCCCCEEEEEeCCCCCEEEEe-eCCCcEEEEECCCCceeEEeeecccC
Q 008496 287 TLLATGSYDGQARIWSTNGDLKC------TLSKHKGPIFSLKWNKKGDYLLTG-SCDKTAIVWDVKTEEWKQQFEFHSGP 359 (563)
Q Consensus 287 ~~l~sg~~dg~i~vw~~~~~~~~------~~~~h~~~V~~l~~~~~~~~l~s~-s~D~~v~iwd~~~~~~~~~~~~~~~~ 359 (563)
.+|+.+.. +.|+.++.++.... .+......+.+++|++++..|+.+ ...+.|..+++.+......+......
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~ 80 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS 80 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCC
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCC
Confidence 34444443 47888887765321 122122346789999977666544 45689999998765443322211122
Q ss_pred e--EEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEE-EEEeC--CCcEEEEeCCCCceee
Q 008496 360 T--LDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLL-ASCSD--DVTAKIWNMKQDKYVH 434 (563)
Q Consensus 360 ~--~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l-as~s~--dg~i~iwd~~~~~~~~ 434 (563)
. +.+++.....+++....+.|.+++...................++++|++..| ++... .+.|..+++.......
T Consensus 81 p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~ 160 (267)
T 1npe_A 81 PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRI 160 (267)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEE
T ss_pred ccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEE
Confidence 3 33445556667777778889998886543222222222457899999965554 44433 4678888876433211
Q ss_pred eecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCc
Q 008496 435 DLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKS 514 (563)
Q Consensus 435 ~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~ 514 (563)
...........++++|++. .+.++-...+.|..+|.........+.+... ...++.. .+..+++....+.
T Consensus 161 ~~~~~~~~P~gia~d~~~~--------~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~-P~gi~~d-~~~lyva~~~~~~ 230 (267)
T 1npe_A 161 LAQDNLGLPNGLTFDAFSS--------QLCWVDAGTHRAECLNPAQPGRRKVLEGLQY-PFAVTSY-GKNLYYTDWKTNS 230 (267)
T ss_dssp EECTTCSCEEEEEEETTTT--------EEEEEETTTTEEEEEETTEEEEEEEEECCCS-EEEEEEE-TTEEEEEETTTTE
T ss_pred EEECCCCCCcEEEEcCCCC--------EEEEEECCCCEEEEEecCCCceEEEecCCCC-ceEEEEe-CCEEEEEECCCCe
Confidence 1112224567889988653 3556666778999999975443333333222 3566654 3344444445689
Q ss_pred EEEEecCCCeeEEEEecCC--CEEEEEEcCCCC
Q 008496 515 MHIWSLKEGKIVKTYTGNG--GIFEVCWNKEGD 545 (563)
Q Consensus 515 v~iw~~~~~~~~~~~~~~~--~i~~l~w~~~g~ 545 (563)
|.+++..+++.+.++.... ..+.+++.|++.
T Consensus 231 v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 231 VIAMDLAISKEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp EEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred EEEEeCCCCCceEEEccccccccceeeecCccC
Confidence 9999999999988886433 467888888874
No 234
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.05 E-value=1.3e-07 Score=94.27 Aligned_cols=259 Identities=8% Similarity=0.035 Sum_probs=161.3
Q ss_pred CCEEEEEeCCCeEEEEEcC-CceeEeeccC---------CCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeee
Q 008496 286 GTLLATGSYDGQARIWSTN-GDLKCTLSKH---------KGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEF 355 (563)
Q Consensus 286 g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h---------~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~ 355 (563)
+..+++++.++.|..+|.. |+........ ...+.+. ....+..++.++.++.|..+|..+++..-.+..
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~ 131 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGG-VTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKV 131 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEE-EEEETTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccC-ceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeC
Confidence 5677788888999999974 6655444331 1223221 122456788889999999999999987665544
Q ss_pred cccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcce-----eEEEECCCCCEEEEEeCCCcEEEEeCCCC
Q 008496 356 HSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEV-----NCVKWDPTGSLLASCSDDVTAKIWNMKQD 430 (563)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i-----~~~~~~~~~~~las~s~dg~i~iwd~~~~ 430 (563)
.......... .+..++.++.++.++.++..+++.+..+....... ...... +..++.++.++.+..+|..++
T Consensus 132 ~~~~~~~p~~-~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG 208 (376)
T 3q7m_A 132 AGEALSRPVV-SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVLMEQG 208 (376)
T ss_dssp SSCCCSCCEE-ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEEETTTC
T ss_pred CCceEcCCEE-ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEEECCCC
Confidence 3221111111 23456667788999999988877665554322111 112222 346777888999999999988
Q ss_pred ceeeeecccCCC----EEE---EEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCC
Q 008496 431 KYVHDLREHSKE----IYT---IRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTG 503 (563)
Q Consensus 431 ~~~~~~~~~~~~----i~~---~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg 503 (563)
+.+......... +.. +.-.|. ..++ .+..++.++.|..+|..+|+.++.... .....+.. ++
T Consensus 209 ~~~w~~~~~~~~~~~~~~~~~~~~~~p~-----~~~~--~v~~~~~~g~l~~~d~~tG~~~w~~~~--~~~~~~~~--~~ 277 (376)
T 3q7m_A 209 QMIWQQRISQATGSTEIDRLSDVDTTPV-----VVNG--VVFALAYNGNLTALDLRSGQIMWKREL--GSVNDFIV--DG 277 (376)
T ss_dssp CEEEEEECCC-----------CCCCCCE-----EETT--EEEEECTTSCEEEEETTTCCEEEEECC--CCEEEEEE--ET
T ss_pred cEEEEEecccCCCCcccccccccCCCcE-----EECC--EEEEEecCcEEEEEECCCCcEEeeccC--CCCCCceE--EC
Confidence 876554322110 000 000010 0011 356677899999999999999887653 23444444 46
Q ss_pred CEEEEEeCCCcEEEEecCCCeeEEEEec-CC-CEEEEEEcCCCCEEEEEECCCeEEEEEe
Q 008496 504 EYLASGSLDKSMHIWSLKEGKIVKTYTG-NG-GIFEVCWNKEGDKIAACFANHTVCVLDF 561 (563)
Q Consensus 504 ~~lasgs~dg~v~iw~~~~~~~~~~~~~-~~-~i~~l~w~~~g~~la~~~~~~~v~v~~~ 561 (563)
..|..++.++.|..+|..+|+.+..... .. .+..+.. .+..|.++..+|.+.++|.
T Consensus 278 ~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~ 335 (376)
T 3q7m_A 278 NRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINV 335 (376)
T ss_dssp TEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEET
T ss_pred CEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEEC
Confidence 6778888899999999999998877652 11 1222222 2567888888888888875
No 235
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.98 E-value=2.4e-08 Score=98.35 Aligned_cols=220 Identities=8% Similarity=-0.067 Sum_probs=136.5
Q ss_pred cEEEEECCCCceeEEeeecccCeEEEecCCCceEEEEe---------CCCeEEEEEcCCCcceeeecCC-------Ccce
Q 008496 338 TAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSS---------TDNMIYVCKIGENRPIKTFAGH-------QGEV 401 (563)
Q Consensus 338 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~d~~i~~~~~~~~~~~~~~~~h-------~~~i 401 (563)
+|.+.|..+++.+..+.....+-+.+.+.....+++.. .++.|.++|..+.+.+.++... ....
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P 126 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLSLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRV 126 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTCEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCT
T ss_pred eEEEEECCCCeEEEEEeCCCCCceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCc
Confidence 88899999999999888776664444444445555542 4688999999999988887532 1235
Q ss_pred eEEEECCCCCEEEEEeC--CCcEEE--EeCCCCceeeeeccc------------------CCCEEEEEEcc----CCCCC
Q 008496 402 NCVKWDPTGSLLASCSD--DVTAKI--WNMKQDKYVHDLREH------------------SKEIYTIRWSP----TGSGT 455 (563)
Q Consensus 402 ~~~~~~~~~~~las~s~--dg~i~i--wd~~~~~~~~~~~~~------------------~~~i~~~~~~p----~~~~~ 455 (563)
..++++|||++++.+.. +..+.+ +|..+ +..+... .+.+..+.... ++...
T Consensus 127 ~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~ 203 (368)
T 1mda_H 127 HIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVG 203 (368)
T ss_dssp TSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECC
T ss_pred ceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEE
Confidence 57999999999988864 457888 98866 2222110 01111111111 00000
Q ss_pred ------C--------CCCCcEEEEEEeCCCeEEEEeCCCCe--EEEEecC-------CC---CCEEEEEEcCCCCEEEEE
Q 008496 456 ------N--------NPNQQLILASASFDSTVKLWDVELGK--LLYSLNG-------HR---EPVYSLAFSPTGEYLASG 509 (563)
Q Consensus 456 ------~--------~~~~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~-------h~---~~i~~l~~spdg~~lasg 509 (563)
. .+....++ ..+. +.|.+.|+..+. .+..+.- +. .....++|+|||+.+..+
T Consensus 204 ~~~t~~i~vg~~P~~~~~~~~~~-~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~ 281 (368)
T 1mda_H 204 AQCTGAQNCSSQAAQANYPGMLV-WAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMIL 281 (368)
T ss_dssp CCSCTTSCBCSCCEEETTTTEEE-ECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEE
T ss_pred EEeeeeeeCCCCccccccCCEEE-EEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEE
Confidence 0 01111112 2223 667777765432 2221110 00 111126899999887765
Q ss_pred eC---------CCcEEEEecCCCeeEEEEecCCCEEEEEEcCCCCE-EEEEE-CCCeEEEEEee
Q 008496 510 SL---------DKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDK-IAACF-ANHTVCVLDFR 562 (563)
Q Consensus 510 s~---------dg~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~g~~-la~~~-~~~~v~v~~~~ 562 (563)
.. ++.+.++|+.++++++.+........++|+|||++ ++++. .+++|.|||.+
T Consensus 282 ~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~ 345 (368)
T 1mda_H 282 TVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAA 345 (368)
T ss_dssp EEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESS
T ss_pred eccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEccCCCCeEEEEECC
Confidence 32 23567999999999988876667889999999984 55555 58999999975
No 236
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.95 E-value=1.1e-08 Score=99.90 Aligned_cols=253 Identities=14% Similarity=0.066 Sum_probs=157.4
Q ss_pred CCCCCEEEEEeCCCeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEE
Q 008496 283 NGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLD 362 (563)
Q Consensus 283 s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~ 362 (563)
..+|. +..++.++.+..|+.++........+...+.++...++|. |..++.+ +..+|. +++....+.........
T Consensus 28 d~~g~-l~v~t~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~~~~~~~~ 102 (330)
T 3hxj_A 28 AKNGT-IYLGSSNKNLYAINTDGSVKWFFKSGEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFDTKKAIVSD 102 (330)
T ss_dssp CTTSC-EECSSTTTTTEEECTTSCEEESSCGGGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSCC-----CC
T ss_pred ccCCe-EEEEcCCCEEEEECCCCcEEEEEecCCCcccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEECCCCcccC
Confidence 34554 5566778888888866666555444444556677766664 5555544 888886 55433322222111111
Q ss_pred EecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCC
Q 008496 363 VDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKE 442 (563)
Q Consensus 363 ~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~ 442 (563)
.... +..+..++.++.++.++.. ++....+..+...+.++...+++.+ ..++.++.|..||.. ++.+..+......
T Consensus 103 ~~~~-~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~l-~vgt~~~~l~~~d~~-g~~~~~~~~~~~~ 178 (330)
T 3hxj_A 103 FTIF-EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGTI-YVGSNDNYLYAINPD-GTEKWRFKTNDAI 178 (330)
T ss_dssp EEEE-TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSCE-EEECTTSEEEEECTT-SCEEEEEECSSCC
T ss_pred ceEE-CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCEE-EEEcCCCEEEEECCC-CCEeEEEecCCCc
Confidence 1111 4556667778888888877 5555555555555677778878875 457778999999988 6665555444444
Q ss_pred EEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 008496 443 IYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKE 522 (563)
Q Consensus 443 i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~ 522 (563)
+.++...+++. |..++ +.|..+| .+++.+.........+.++...++|.+.+ ++.++.|..++. +
T Consensus 179 ~~~~~~d~~g~----------l~v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v-~t~~~gl~~~~~-~ 243 (330)
T 3hxj_A 179 TSAASIGKDGT----------IYFGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYV-TSLDGHLYAINP-D 243 (330)
T ss_dssp CSCCEECTTCC----------EEEES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEE-EETTTEEEEECT-T
T ss_pred eeeeEEcCCCE----------EEEEe--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEEE-EcCCCeEEEECC-C
Confidence 44455444432 33344 7899999 77888877766666788889998886544 667788888874 5
Q ss_pred CeeEEEEecCCC-EEEEEEcCCCCEEEEEECCCeEEEEE
Q 008496 523 GKIVKTYTGNGG-IFEVCWNKEGDKIAACFANHTVCVLD 560 (563)
Q Consensus 523 ~~~~~~~~~~~~-i~~l~w~~~g~~la~~~~~~~v~v~~ 560 (563)
++.+..+..... +..+..+++|. |.++..++.+..+|
T Consensus 244 g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~ggl~~~d 281 (330)
T 3hxj_A 244 GTEKWRFKTGKRIESSPVIGNTDT-IYFGSYDGHLYAIN 281 (330)
T ss_dssp SCEEEEEECSSCCCSCCEECTTSC-EEEECTTCEEEEEC
T ss_pred CCEeEEeeCCCCccccceEcCCCe-EEEecCCCCEEEEC
Confidence 666666654333 33455666664 55566676777765
No 237
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.95 E-value=2.1e-05 Score=86.50 Aligned_cols=309 Identities=9% Similarity=0.071 Sum_probs=193.1
Q ss_pred eEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeCCCe
Q 008496 218 VCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQ 297 (563)
Q Consensus 218 V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg~ 297 (563)
|.++...+++.+.+ |+.++-+..|+..++... .... ......|.++...++|.+.+ |+.++-
T Consensus 175 i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~--------------~~~~--~~~~~~i~~i~~d~~g~lwi-gt~~~G 236 (795)
T 4a2l_A 175 IASTLYRQGDQIYI-GTSTDGLYTYSITQKTFE--------------KVIP--ILGTKQIQAILQQSPTRIWV-ATEGAG 236 (795)
T ss_dssp CEEEEEEETTEEEE-EESSSCEEEEETTTCCEE--------------ECC------CCCEEEEEEEETTEEEE-EEBSSC
T ss_pred eEEEEECCCCCEEE-EECCCCEEEEeCCCCeEE--------------EecC--CCCCCeeEEEEEcCCCCEEE-EECCCC
Confidence 78888887877665 555445777886543211 0000 01235688888888877555 454445
Q ss_pred EEEEEcCCceeEeecc--------CCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeee-------cccCeEE
Q 008496 298 ARIWSTNGDLKCTLSK--------HKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEF-------HSGPTLD 362 (563)
Q Consensus 298 i~vw~~~~~~~~~~~~--------h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~-------~~~~~~~ 362 (563)
+.+|+........+.. ....|.++...++|...+. +.+ -|.+||..++.+...... ....+.+
T Consensus 237 l~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWig-t~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~ 314 (795)
T 4a2l_A 237 LFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIG-TFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRS 314 (795)
T ss_dssp EEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEE-ESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEE
T ss_pred eEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEE-eCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEE
Confidence 8888876543333321 1356999999888875554 444 588999887765432211 1234566
Q ss_pred EecCCCceEEEEeCCCeEEEEEcCCCcceeeecC-------CCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeee
Q 008496 363 VDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAG-------HQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHD 435 (563)
Q Consensus 363 ~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~-------h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~ 435 (563)
+....+..+..++.++-|..++..... ...+.. ....|.++..+++|.+. .|+.++-|..|+..++...+-
T Consensus 315 i~~D~~g~lWigt~~~Gl~~~~~~~~~-~~~~~~~~~~~~l~~~~V~~i~~d~~g~lW-iGt~~~Gl~~~~~~~~~~~~~ 392 (795)
T 4a2l_A 315 IFMDSQGGMWLGTYFGGLNYYHPIRNR-FKNIRNIPYKNSLSDNVVSCIVEDKDKNLW-IGTNDGGLNLYNPITQRFTSY 392 (795)
T ss_dssp EEECTTSCEEEEESSSCEEEECGGGGS-SEEECCCTTSSSCSCSSEEEEEECTTSCEE-EEESSSCEEEECTTTCCEEEE
T ss_pred EEEeCCcCEEEEECCCCeEEeCCCccc-ceEEcCCCCCCCCCCCeeEEEEECCCCCEE-EEECCCCeEEEcCCCCcEEEE
Confidence 655555566666666677777654332 122211 23468999999888765 577777799999877654332
Q ss_pred ecc--------cCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEec----CCCCCEEEEEEcCCC
Q 008496 436 LRE--------HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN----GHREPVYSLAFSPTG 503 (563)
Q Consensus 436 ~~~--------~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~----~h~~~i~~l~~spdg 503 (563)
... ....|.++...+++. +|-.|+.++-|.+||..+++...... .....|.++...++|
T Consensus 393 ~~~~~~~~~~l~~~~v~~i~~d~~g~---------~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g 463 (795)
T 4a2l_A 393 TLQEDESARGIGSNNIKAVYVDEKKS---------LVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEG 463 (795)
T ss_dssp CCC------CCSCSCEEEEEEETTTT---------EEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSS
T ss_pred ecCCCCcccCCCCccEEEEEEcCCCC---------EEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCC
Confidence 111 235688888766552 25567777789999998876543322 124579999999999
Q ss_pred CEEEEEeCCCcEEEEecCCCeeEEEEec-------CCCEEEEEEcCCCCEEEEEECCCeEEEEEe
Q 008496 504 EYLASGSLDKSMHIWSLKEGKIVKTYTG-------NGGIFEVCWNKEGDKIAACFANHTVCVLDF 561 (563)
Q Consensus 504 ~~lasgs~dg~v~iw~~~~~~~~~~~~~-------~~~i~~l~w~~~g~~la~~~~~~~v~v~~~ 561 (563)
.+.+.. .+| |.+|+..+++....... ...|.++..+++|...++.. + .+.++|.
T Consensus 464 ~lwigt-~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~-Gl~~~~~ 524 (795)
T 4a2l_A 464 NLWLGT-LSA-LVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-E-GLSVFKQ 524 (795)
T ss_dssp CEEEEE-SSC-EEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-S-CEEEEEE
T ss_pred CEEEEe-cCc-eeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-C-ceEEEeC
Confidence 866644 454 88999888765432211 24588999999998766554 4 4777765
No 238
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.94 E-value=5.6e-07 Score=89.11 Aligned_cols=219 Identities=14% Similarity=0.186 Sum_probs=143.1
Q ss_pred CCCCEEE-EeeCCCcEEEEECCCC----ceeEEee---e----cccCeEEEecCCCceEEEEeCC------CeEEEEEcC
Q 008496 325 KKGDYLL-TGSCDKTAIVWDVKTE----EWKQQFE---F----HSGPTLDVDWRNNVSFATSSTD------NMIYVCKIG 386 (563)
Q Consensus 325 ~~~~~l~-s~s~D~~v~iwd~~~~----~~~~~~~---~----~~~~~~~~~~~~~~~~~~~~~d------~~i~~~~~~ 386 (563)
+++++|+ ++-.+++|.++|+.+. +....++ . .......+....+..++++..+ +.+.++|..
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdGi~Vs~~g~~~g~~~g~v~vlD~~ 172 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDAIYISALGNEEGEGPGGILMLDHY 172 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSCEEEEEEEETTSCSCCEEEEECTT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCeEEEEcCCCcCCCCCCeEEEEECC
Confidence 7777765 5666789999998755 4555552 1 0011222333333355555444 789999998
Q ss_pred CCcceeeecCCCc---ceeEEEECCCCCEEEEEe-------------------CCCcEEEEeCCCCceeeeeccc--CCC
Q 008496 387 ENRPIKTFAGHQG---EVNCVKWDPTGSLLASCS-------------------DDVTAKIWNMKQDKYVHDLREH--SKE 442 (563)
Q Consensus 387 ~~~~~~~~~~h~~---~i~~~~~~~~~~~las~s-------------------~dg~i~iwd~~~~~~~~~~~~~--~~~ 442 (563)
+.+.+.++....+ .--.+.|+|+++.+++.. .+.+|.+||+.+++.+.++... ...
T Consensus 173 T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~ 252 (462)
T 2ece_A 173 SFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRM 252 (462)
T ss_dssp TCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEE
T ss_pred CCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCc
Confidence 8888887762222 123478899999888874 3689999999988777766542 122
Q ss_pred EEEEEE--ccCCCCCCCCCCcEEEEEEe-----CCCeEEEEeCCCCeEE--EE--ecCC----------------CCCEE
Q 008496 443 IYTIRW--SPTGSGTNNPNQQLILASAS-----FDSTVKLWDVELGKLL--YS--LNGH----------------REPVY 495 (563)
Q Consensus 443 i~~~~~--~p~~~~~~~~~~~~~l~s~s-----~dg~i~iwd~~~~~~~--~~--~~~h----------------~~~i~ 495 (563)
...+.| +|++. ...+++- .+++|.+|....++.. .. +... .....
T Consensus 253 P~~i~f~~~Pdg~--------~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa 324 (462)
T 2ece_A 253 ALELRPLHDPTKL--------MGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVT 324 (462)
T ss_dssp EEEEEECSSTTCC--------EEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCC
T ss_pred cceeEeeECCCCC--------EEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCcee
Confidence 344555 77664 3555566 7788988766554321 11 1110 13367
Q ss_pred EEEEcCCCCEEEEEeC-CCcEEEEecCC---CeeEEEEecCC---------------CEEEEEEcCCCCEEEEEE
Q 008496 496 SLAFSPTGEYLASGSL-DKSMHIWSLKE---GKIVKTYTGNG---------------GIFEVCWNKEGDKIAACF 551 (563)
Q Consensus 496 ~l~~spdg~~lasgs~-dg~v~iw~~~~---~~~~~~~~~~~---------------~i~~l~w~~~g~~la~~~ 551 (563)
.|.+||||++|.++.. .+.|.+||+.+ .+++......+ ....++++|||++|.++.
T Consensus 325 ~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 325 DIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred EEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 8999999999977664 68999999853 35666654431 357899999999999987
No 239
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.92 E-value=4.2e-05 Score=84.07 Aligned_cols=314 Identities=10% Similarity=0.080 Sum_probs=194.0
Q ss_pred CCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeee-cccccCCCCeEEEEECCCCCEEEEEe
Q 008496 215 TSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVK-GRTNEKSKDVTTLDWNGEGTLLATGS 293 (563)
Q Consensus 215 ~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~V~~l~~s~~g~~l~sg~ 293 (563)
...|.++...+++.+.+....+| +.+|+..++... ...... .........|.++...++|.+.+ |+
T Consensus 214 ~~~i~~i~~d~~g~lwigt~~~G-l~~~~~~~~~~~-----------~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt 280 (795)
T 4a2l_A 214 TKQIQAILQQSPTRIWVATEGAG-LFLINPKTKEIK-----------NYLHSPSNPKSISSNYIRSLAMDSQNRLWI-GT 280 (795)
T ss_dssp CCCEEEEEEEETTEEEEEEBSSC-EEEEETTTTEEE-----------EECCCTTCTTSCSCSBEEEEEECTTSCEEE-EE
T ss_pred CCeeEEEEEcCCCCEEEEECCCC-eEEEeCCCCeEE-----------EeecCCCCccccCCCeEEEEEEcCCCCEEE-Ee
Confidence 45688888777777655433344 777886543210 000000 00111245699999999988665 44
Q ss_pred CCCeEEEEEcCCceeEeecc--------CCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEee------ecccC
Q 008496 294 YDGQARIWSTNGDLKCTLSK--------HKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFE------FHSGP 359 (563)
Q Consensus 294 ~dg~i~vw~~~~~~~~~~~~--------h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~------~~~~~ 359 (563)
.+ -+.+|+........+.. ....|.++...++|. |..|+.++-|..|+..+..+..... .....
T Consensus 281 ~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~ 358 (795)
T 4a2l_A 281 FN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNV 358 (795)
T ss_dssp SS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSS
T ss_pred CC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCe
Confidence 45 57888876544333321 235799999998886 4556677788999876655432211 11234
Q ss_pred eEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeec-C--------CCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCC
Q 008496 360 TLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFA-G--------HQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD 430 (563)
Q Consensus 360 ~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~-~--------h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~ 430 (563)
+.++....+..+-.++.++.|..++...... ..+. . ....|.++..++++++|..|+.++-|.+||..++
T Consensus 359 V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~-~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~ 437 (795)
T 4a2l_A 359 VSCIVEDKDKNLWIGTNDGGLNLYNPITQRF-TSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSG 437 (795)
T ss_dssp EEEEEECTTSCEEEEESSSCEEEECTTTCCE-EEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTC
T ss_pred eEEEEECCCCCEEEEECCCCeEEEcCCCCcE-EEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCC
Confidence 5666555555666667676777777655432 2221 1 1356889999889985666777777999998877
Q ss_pred ceeeeec----ccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecC------CCCCEEEEEEc
Q 008496 431 KYVHDLR----EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG------HREPVYSLAFS 500 (563)
Q Consensus 431 ~~~~~~~----~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~------h~~~i~~l~~s 500 (563)
+...-.. .....|.++...+++. +++ |+.+ -|.+||..+++....... ....|.++...
T Consensus 438 ~~~~~~~~~~~l~~~~v~~i~~d~~g~--------lwi--gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d 506 (795)
T 4a2l_A 438 QVENFNQRNSQLVNENVYAILPDGEGN--------LWL--GTLS-ALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRD 506 (795)
T ss_dssp CEEEECTTTSCCSCSCEEEEEECSSSC--------EEE--EESS-CEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEEC
T ss_pred cEEEeecCCCCcCCCeeEEEEECCCCC--------EEE--EecC-ceeEEeCCCCeEEEccccccccccCCceEEEEEEC
Confidence 6433211 1345688888766553 333 4444 588899887765432211 23579999999
Q ss_pred CCCCEEEEEeCCCcEEEEecCCCeeEEEEe--------cCCCEEEEEEcCCCCEEEEEECCCeEEEEEe
Q 008496 501 PTGEYLASGSLDKSMHIWSLKEGKIVKTYT--------GNGGIFEVCWNKEGDKIAACFANHTVCVLDF 561 (563)
Q Consensus 501 pdg~~lasgs~dg~v~iw~~~~~~~~~~~~--------~~~~i~~l~w~~~g~~la~~~~~~~v~v~~~ 561 (563)
++|.+.+... . -|..|+..+++. .+. ....|.++..+++|+..++. .+ .+..||.
T Consensus 507 ~~g~lWigt~-~-Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT-~~-Gl~~~d~ 569 (795)
T 4a2l_A 507 SHKRLWIGGE-E-GLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGT-RE-GFYCFNE 569 (795)
T ss_dssp TTCCEEEEES-S-CEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEE-SS-CEEEEET
T ss_pred CCCCEEEEeC-C-ceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEe-CC-CceeECC
Confidence 9998766544 4 488999887766 332 12358899999999865554 34 4666663
No 240
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.88 E-value=2.9e-07 Score=98.80 Aligned_cols=269 Identities=12% Similarity=0.069 Sum_probs=168.2
Q ss_pred CCEEEEEeCCCeEEEEEc-CCceeEeeccCCC----------CE-EEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEe
Q 008496 286 GTLLATGSYDGQARIWST-NGDLKCTLSKHKG----------PI-FSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF 353 (563)
Q Consensus 286 g~~l~sg~~dg~i~vw~~-~~~~~~~~~~h~~----------~V-~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~ 353 (563)
+..+++++.++.|..+|. +|+.+..+..... .+ ..+.. .+..++.++.|+.|..+|..+++.+-.+
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 143 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQ 143 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence 445666777788888885 4555544432111 00 01111 3467888899999999999999877666
Q ss_pred eecccC----eE-EEecCCCceEEEEeC-----CCeEEEEEcCCCcceeeecCC--------------------------
Q 008496 354 EFHSGP----TL-DVDWRNNVSFATSST-----DNMIYVCKIGENRPIKTFAGH-------------------------- 397 (563)
Q Consensus 354 ~~~~~~----~~-~~~~~~~~~~~~~~~-----d~~i~~~~~~~~~~~~~~~~h-------------------------- 397 (563)
...... +. .....++..++..+. ++.|+.+|..+++.+-.+...
T Consensus 144 ~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w 223 (668)
T 1kv9_A 144 QTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYW 223 (668)
T ss_dssp ECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHH
T ss_pred ccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCcccee
Confidence 542110 00 000113333333222 588999999888776555311
Q ss_pred -----CcceeEEEECCCCCEEEEEeCCCc-------------------EEEEeCCCCceeeeecc--cC-------CCEE
Q 008496 398 -----QGEVNCVKWDPTGSLLASCSDDVT-------------------AKIWNMKQDKYVHDLRE--HS-------KEIY 444 (563)
Q Consensus 398 -----~~~i~~~~~~~~~~~las~s~dg~-------------------i~iwd~~~~~~~~~~~~--~~-------~~i~ 444 (563)
......++++|+..+++.++.++. |..+|.++++.+-.++. |. .+..
T Consensus 224 ~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~ 303 (668)
T 1kv9_A 224 KLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQIT 303 (668)
T ss_dssp HHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEE
T ss_pred eeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcE
Confidence 001124788888888888887763 89999999988766543 22 1221
Q ss_pred EEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCC------------CCE------------------
Q 008496 445 TIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHR------------EPV------------------ 494 (563)
Q Consensus 445 ~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~------------~~i------------------ 494 (563)
......++. ...+++.++.+|.++++|..+|+.+....... .++
T Consensus 304 ~~d~~~~G~------~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~ 377 (668)
T 1kv9_A 304 LAELNIDGK------PRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSP 377 (668)
T ss_dssp EEEEEETTE------EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCT
T ss_pred EEEeccCCc------EEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCC
Confidence 111112221 11257889999999999999999885433211 011
Q ss_pred ------EEEEEcCCCCEEEEE------------------------------------eCCCcEEEEecCCCeeEEEEecC
Q 008496 495 ------YSLAFSPTGEYLASG------------------------------------SLDKSMHIWSLKEGKIVKTYTGN 532 (563)
Q Consensus 495 ------~~l~~spdg~~lasg------------------------------------s~dg~v~iw~~~~~~~~~~~~~~ 532 (563)
..++|+|+...+... ..+|.|..||+.+|+.+..+...
T Consensus 378 ~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~ 457 (668)
T 1kv9_A 378 FGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYP 457 (668)
T ss_dssp TCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEES
T ss_pred ccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCC
Confidence 126788876655431 13478999999999998887665
Q ss_pred CCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496 533 GGIFEVCWNKEGDKIAACFANHTVCVLDFR 562 (563)
Q Consensus 533 ~~i~~l~w~~~g~~la~~~~~~~v~v~~~~ 562 (563)
.......+...|..|+++..++.+.+||.+
T Consensus 458 ~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~ 487 (668)
T 1kv9_A 458 THWNGGTLSTAGNLVFQGTAAGQMHAYSAD 487 (668)
T ss_dssp SSCCCCEEEETTTEEEEECTTSEEEEEETT
T ss_pred CCCcCceeEeCCCEEEEECCcccchhhhhh
Confidence 544444566678899999999999999864
No 241
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.86 E-value=1.5e-06 Score=93.22 Aligned_cols=265 Identities=14% Similarity=0.192 Sum_probs=155.2
Q ss_pred CCEEEEEeCCCeEEEEEc-CCceeEeeccCCC-CEEEEEeCC--CCCEEEEeeC------CCcEEEEECCCCceeEEeee
Q 008496 286 GTLLATGSYDGQARIWST-NGDLKCTLSKHKG-PIFSLKWNK--KGDYLLTGSC------DKTAIVWDVKTEEWKQQFEF 355 (563)
Q Consensus 286 g~~l~sg~~dg~i~vw~~-~~~~~~~~~~h~~-~V~~l~~~~--~~~~l~s~s~------D~~v~iwd~~~~~~~~~~~~ 355 (563)
+..++.++.|+.+..+|. +|+++..+..... ....+...| .+..++.+.. ++.|..+|..+++.+-.+..
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~ 196 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYT 196 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecc
Confidence 467888889999999996 4766655433110 000000111 1345555543 58999999999998776653
Q ss_pred ccc-C--------------------------------eEEEecCCCceEEEEeCCC-------------------eEEEE
Q 008496 356 HSG-P--------------------------------TLDVDWRNNVSFATSSTDN-------------------MIYVC 383 (563)
Q Consensus 356 ~~~-~--------------------------------~~~~~~~~~~~~~~~~~d~-------------------~i~~~ 383 (563)
... + ...++-.. ..+..+..++ .|+.+
T Consensus 197 ~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~-~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~Al 275 (668)
T 1kv9_A 197 VPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPEL-DLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAI 275 (668)
T ss_dssp SCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTT-TEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEE
T ss_pred cCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCC-CEEEEeCCCCCccccCCCCCCCCCceeeeeEEEE
Confidence 210 0 01111122 2333343333 48888
Q ss_pred EcCCCcceeeecC--CC-------cceeEEEECCCCC---EEEEEeCCCcEEEEeCCCCceeeeecccCCC-EEEE----
Q 008496 384 KIGENRPIKTFAG--HQ-------GEVNCVKWDPTGS---LLASCSDDVTAKIWNMKQDKYVHDLREHSKE-IYTI---- 446 (563)
Q Consensus 384 ~~~~~~~~~~~~~--h~-------~~i~~~~~~~~~~---~las~s~dg~i~iwd~~~~~~~~~~~~~~~~-i~~~---- 446 (563)
|..+++.+-.+.. |. .......+..+|+ .++.++.+|.+.++|..+++.+......... ...+
T Consensus 276 D~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~ 355 (668)
T 1kv9_A 276 RPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLAT 355 (668)
T ss_dssp CTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTT
T ss_pred cCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecccccccccccccccccc
Confidence 8888877665543 22 2222233334665 6889999999999999999877433221100 0000
Q ss_pred ----------------EEccCCCC-------CCCCCCcEEEE-----------------------------------EEe
Q 008496 447 ----------------RWSPTGSG-------TNNPNQQLILA-----------------------------------SAS 468 (563)
Q Consensus 447 ----------------~~~p~~~~-------~~~~~~~~~l~-----------------------------------s~s 468 (563)
...|...+ ..+|....+.+ ...
T Consensus 356 g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~ 435 (668)
T 1kv9_A 356 GRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAV 435 (668)
T ss_dssp CCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGG
T ss_pred CCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCC
Confidence 00010000 00111122221 112
Q ss_pred CCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEecCCCEE--EEEEcCCCC-
Q 008496 469 FDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIF--EVCWNKEGD- 545 (563)
Q Consensus 469 ~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~~~i~--~l~w~~~g~- 545 (563)
.+|.|..||+.+|+.++....+ .++....+...+.+++.|+.|+.|+.||.++|+++..+....++. -+.+..+|+
T Consensus 436 ~~g~l~A~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~~ 514 (668)
T 1kv9_A 436 VSGALLAWDPVKQKAAWKVPYP-THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQ 514 (668)
T ss_dssp CEEEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred ccceEEEEeCCCCcEEEEccCC-CCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceEEEECCEE
Confidence 4588999999999999887643 334444555678889999999999999999999999887655442 355667786
Q ss_pred EEEEEEC
Q 008496 546 KIAACFA 552 (563)
Q Consensus 546 ~la~~~~ 552 (563)
++++|..
T Consensus 515 yva~~~G 521 (668)
T 1kv9_A 515 YVAIMAG 521 (668)
T ss_dssp EEEEEEC
T ss_pred EEEEEec
Confidence 6666654
No 242
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.80 E-value=1.4e-06 Score=86.23 Aligned_cols=183 Identities=15% Similarity=0.200 Sum_probs=125.4
Q ss_pred ceEEEEeCCCeEEEEEcCCC----cceeeec-------CCCcceeEEEECCCCCEEEEEeCC------CcEEEEeCCCCc
Q 008496 369 VSFATSSTDNMIYVCKIGEN----RPIKTFA-------GHQGEVNCVKWDPTGSLLASCSDD------VTAKIWNMKQDK 431 (563)
Q Consensus 369 ~~~~~~~~d~~i~~~~~~~~----~~~~~~~-------~h~~~i~~~~~~~~~~~las~s~d------g~i~iwd~~~~~ 431 (563)
..++.+..++.|+++|+.+. +.++++. .....-..+.+.|+| +++++..+ +.|.+.|..+.+
T Consensus 97 ~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~ 175 (462)
T 2ece_A 97 FLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFE 175 (462)
T ss_dssp EEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCC
T ss_pred EEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCe
Confidence 34567778899999998754 4444442 011134457788999 77776665 789999999999
Q ss_pred eeeeecccC---CCEEEEEEccCCCCCCCCCCcEEEEEEe-------------------CCCeEEEEeCCCCeEEEEecC
Q 008496 432 YVHDLREHS---KEIYTIRWSPTGSGTNNPNQQLILASAS-------------------FDSTVKLWDVELGKLLYSLNG 489 (563)
Q Consensus 432 ~~~~~~~~~---~~i~~~~~~p~~~~~~~~~~~~~l~s~s-------------------~dg~i~iwd~~~~~~~~~~~~ 489 (563)
.+..+.... .--+.+.|+|++. ++++.. .+.+|.+||+.+++.+.++.-
T Consensus 176 v~~~~~~~~~~~~~~Yd~~~~p~~~---------~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~v 246 (462)
T 2ece_A 176 PLGKWEIDRGDQYLAYDFWWNLPNE---------VLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTL 246 (462)
T ss_dssp EEEECCSBCTTCCCCCCEEEETTTT---------EEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEES
T ss_pred EEEEEccCCCCccccceEEECCCCC---------EEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEec
Confidence 888775322 2245678888764 455553 378999999999988877754
Q ss_pred C--CCCEEEEEE--cCCCCEEEEEe------CCCcEEEEecCCCee--EEEE--ec-----------------CCCEEEE
Q 008496 490 H--REPVYSLAF--SPTGEYLASGS------LDKSMHIWSLKEGKI--VKTY--TG-----------------NGGIFEV 538 (563)
Q Consensus 490 h--~~~i~~l~~--spdg~~lasgs------~dg~v~iw~~~~~~~--~~~~--~~-----------------~~~i~~l 538 (563)
- ......+.| +|+|+++.+++ .+++|.+|....|+. .+.+ .. ...+.++
T Consensus 247 g~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I 326 (462)
T 2ece_A 247 GEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDI 326 (462)
T ss_dssp CTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCE
T ss_pred CCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEE
Confidence 2 122345656 99999887666 567898877765532 1211 11 1346789
Q ss_pred EEcCCCCEEEEEE-CCCeEEEEEe
Q 008496 539 CWNKEGDKIAACF-ANHTVCVLDF 561 (563)
Q Consensus 539 ~w~~~g~~la~~~-~~~~v~v~~~ 561 (563)
.+++||++|.++. ..+.|+|||+
T Consensus 327 ~lS~DGrfLYVSnrg~d~VavfdV 350 (462)
T 2ece_A 327 DISLDDKFLYLSLWGIGEVRQYDI 350 (462)
T ss_dssp EECTTSCEEEEEETTTTEEEEEEC
T ss_pred EECCCCCEEEEEeCCCCEEEEEEe
Confidence 9999999888764 4679999997
No 243
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.79 E-value=1.2e-06 Score=81.50 Aligned_cols=193 Identities=10% Similarity=0.067 Sum_probs=135.3
Q ss_pred EEEEEeCCCCCEEEEeeC--CCcEEEEECCCCceeEEeeecccC-eEEEecCCCceEEEEeCCCeEEEEEcCCCcceeee
Q 008496 318 IFSLKWNKKGDYLLTGSC--DKTAIVWDVKTEEWKQQFEFHSGP-TLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTF 394 (563)
Q Consensus 318 V~~l~~~~~~~~l~s~s~--D~~v~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~ 394 (563)
..++.|++++...++.+. +++|.+.|+.+++....+.....+ ...+.+.++..+++.-.++.+.++|..+.+.+.++
T Consensus 23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~v~~~i 102 (266)
T 2iwa_A 23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLSNIKNF 102 (266)
T ss_dssp EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEEEEEETTTTEEEEEE
T ss_pred cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEEEEEECCCCcEEEEE
Confidence 578999998644444433 579999999999988877643322 22345556677788888999999999988888877
Q ss_pred cCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccC-----CCEEEEEEccCCCCCCCCCCcEEEEEEeC
Q 008496 395 AGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHS-----KEIYTIRWSPTGSGTNNPNQQLILASASF 469 (563)
Q Consensus 395 ~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~-----~~i~~~~~~p~~~~~~~~~~~~~l~s~s~ 469 (563)
..-...-..+ ++||+.++.+..++.|.++|..+.+.+..+.... .....+.|. ++. +.+....
T Consensus 103 ~~g~~~g~gl--t~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~---------lyvn~~~ 170 (266)
T 2iwa_A 103 THQMKDGWGL--ATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGE---------VWANIWQ 170 (266)
T ss_dssp ECCSSSCCEE--EECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE---------EEEEETT
T ss_pred ECCCCCeEEE--EECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCE---------EEEecCC
Confidence 5221222334 4467666666678899999999988776655321 134566776 432 4566666
Q ss_pred CCeEEEEeCCCCeEEEEecCC-------------CCCEEEEEEcCCCCE-EEEEeCCCcEEEEecCC
Q 008496 470 DSTVKLWDVELGKLLYSLNGH-------------REPVYSLAFSPTGEY-LASGSLDKSMHIWSLKE 522 (563)
Q Consensus 470 dg~i~iwd~~~~~~~~~~~~h-------------~~~i~~l~~spdg~~-lasgs~dg~v~iw~~~~ 522 (563)
++.|.+.|..+++.+..+.-. ....+.|+|+|+++. ++++...+.|.+.++..
T Consensus 171 ~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~ 237 (266)
T 2iwa_A 171 TDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL 237 (266)
T ss_dssp SSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred CCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence 889999999999998877521 124589999999864 56666778888888754
No 244
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.79 E-value=4.9e-06 Score=87.37 Aligned_cols=262 Identities=14% Similarity=0.157 Sum_probs=150.0
Q ss_pred CCEEEEEeCCCeEEEEEc-CCceeEeec--cCCCCEEEEEeCC--CCCEEEEeeC------CCcEEEEECCCCceeEEee
Q 008496 286 GTLLATGSYDGQARIWST-NGDLKCTLS--KHKGPIFSLKWNK--KGDYLLTGSC------DKTAIVWDVKTEEWKQQFE 354 (563)
Q Consensus 286 g~~l~sg~~dg~i~vw~~-~~~~~~~~~--~h~~~V~~l~~~~--~~~~l~s~s~------D~~v~iwd~~~~~~~~~~~ 354 (563)
+..++.++.|+.+..+|. .|+...... .+... ..+.-+| .+..++.++. ++.|..+|..+++.+-.+.
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~-~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 193 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVG-STLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAF 193 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGT-CBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCcc-ceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEc
Confidence 567888888999999996 566654432 21100 0011111 1345565554 7999999999998776654
Q ss_pred ecccC----------------------------------------eEEEecCCCceEEEEe-----------CC----Ce
Q 008496 355 FHSGP----------------------------------------TLDVDWRNNVSFATSS-----------TD----NM 379 (563)
Q Consensus 355 ~~~~~----------------------------------------~~~~~~~~~~~~~~~~-----------~d----~~ 379 (563)
..... ...++-..+..++..+ .+ +.
T Consensus 194 ~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~ 273 (571)
T 2ad6_A 194 ATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMT 273 (571)
T ss_dssp SSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTE
T ss_pred cCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEE
Confidence 32110 0112222223333322 12 25
Q ss_pred EEEEEcCCCcceeeecC--CC--------cceeEEEECCCCC---EEEEEeCCCcEEEEeCCCCceeeeecccC------
Q 008496 380 IYVCKIGENRPIKTFAG--HQ--------GEVNCVKWDPTGS---LLASCSDDVTAKIWNMKQDKYVHDLREHS------ 440 (563)
Q Consensus 380 i~~~~~~~~~~~~~~~~--h~--------~~i~~~~~~~~~~---~las~s~dg~i~iwd~~~~~~~~~~~~~~------ 440 (563)
|+.++..+++.+-.+.. |. ..+ -+....+|+ +++.++.+|.+.++|..+++.+..+....
T Consensus 274 v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~-l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~ 352 (571)
T 2ad6_A 274 IWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMV-LTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFK 352 (571)
T ss_dssp EEEEETTTCCEEEEEESSTTCSSCCCCCCCCE-EEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEE
T ss_pred EEEEecCCCcEEEEecCCCCcccccccCCCCE-EEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccc
Confidence 88888888777655542 21 112 122234674 67788999999999999998775543211
Q ss_pred -------CCEE-----------EEEEccCCC-------CCCCCCCcEEEEEE----------------------------
Q 008496 441 -------KEIY-----------TIRWSPTGS-------GTNNPNQQLILASA---------------------------- 467 (563)
Q Consensus 441 -------~~i~-----------~~~~~p~~~-------~~~~~~~~~~l~s~---------------------------- 467 (563)
.++. ....+|... ...+|...++++..
T Consensus 353 ~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~ 432 (571)
T 2ad6_A 353 KVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMY 432 (571)
T ss_dssp EECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEE
T ss_pred cccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceec
Confidence 1111 001111100 00112222222221
Q ss_pred --------eCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEecCCCEE--E
Q 008496 468 --------SFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIF--E 537 (563)
Q Consensus 468 --------s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~~~i~--~ 537 (563)
..+|.|..||+.+++.+.++... .++.+..+...+..++.++.||.|+.||.++|+++..+.....+. .
T Consensus 433 ~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p 511 (571)
T 2ad6_A 433 PGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSP 511 (571)
T ss_dssp ECTTSTTSCCCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC
T ss_pred cCccccCCCCCCeEEEEECCCCCEEEEecCC-CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeee
Confidence 24689999999999998887532 233333333346677779999999999999999999987654432 3
Q ss_pred EEEcCCCCEEEEE
Q 008496 538 VCWNKEGDKIAAC 550 (563)
Q Consensus 538 l~w~~~g~~la~~ 550 (563)
+.+..+|+.++++
T Consensus 512 ~~~~~~G~~yv~~ 524 (571)
T 2ad6_A 512 MTYSFKGKQYIGS 524 (571)
T ss_dssp EEEEETTEEEEEE
T ss_pred EEEEECCEEEEEE
Confidence 4566788755544
No 245
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.78 E-value=2.4e-06 Score=89.75 Aligned_cols=267 Identities=12% Similarity=0.083 Sum_probs=159.4
Q ss_pred CEEEEEeC-CCeEEEEEc--CCceeEeeccCCC----------CE-EEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEE
Q 008496 287 TLLATGSY-DGQARIWST--NGDLKCTLSKHKG----------PI-FSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQ 352 (563)
Q Consensus 287 ~~l~sg~~-dg~i~vw~~--~~~~~~~~~~h~~----------~V-~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~ 352 (563)
..++.++. ++.+..+|. .|+.+..+..... .+ ..+.. .+..++.++.|+.+..+|..+++.+-.
T Consensus 63 g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~ 140 (571)
T 2ad6_A 63 DMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKINWE 140 (571)
T ss_dssp TEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred CEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEEEE
Confidence 34555555 677777776 4555544321110 00 01111 356788888999999999999987765
Q ss_pred eeeccc----CeE-EEecCCCceEEEEeC-----CCeEEEEEcCCCcceeeecCCCcc----------------------
Q 008496 353 FEFHSG----PTL-DVDWRNNVSFATSST-----DNMIYVCKIGENRPIKTFAGHQGE---------------------- 400 (563)
Q Consensus 353 ~~~~~~----~~~-~~~~~~~~~~~~~~~-----d~~i~~~~~~~~~~~~~~~~h~~~---------------------- 400 (563)
+..... .+. .....++..++.+.. ++.|+.+|..+++.+-.+......
T Consensus 141 ~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g 220 (571)
T 2ad6_A 141 VEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLG 220 (571)
T ss_dssp EECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHH
T ss_pred ecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccc
Confidence 543210 000 000113333443332 789999999887766544321100
Q ss_pred ----------------eeEEEECCCCCEEEEEeCC----------------CcEEEEeCCCCceeeeecc--cC------
Q 008496 401 ----------------VNCVKWDPTGSLLASCSDD----------------VTAKIWNMKQDKYVHDLRE--HS------ 440 (563)
Q Consensus 401 ----------------i~~~~~~~~~~~las~s~d----------------g~i~iwd~~~~~~~~~~~~--~~------ 440 (563)
...+++++...++..++.+ +.|..+|.++++.+-.++. |.
T Consensus 221 ~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~ 300 (571)
T 2ad6_A 221 TKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAG 300 (571)
T ss_dssp HHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCC
T ss_pred cccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCccccccc
Confidence 0235666766666655532 3588899999887765542 11
Q ss_pred --CCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCC-------------CCE-----------
Q 008496 441 --KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHR-------------EPV----------- 494 (563)
Q Consensus 441 --~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~-------------~~i----------- 494 (563)
.++. +...++|. ...+++.++.+|.+.++|..+|+.+....-.. .||
T Consensus 301 ~~~p~l-~~~~~~G~------~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~ 373 (571)
T 2ad6_A 301 VNQMVL-TDQPVNGK------MTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDH 373 (571)
T ss_dssp CCCCEE-EEEEETTE------EEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTC
T ss_pred CCCCEE-EecccCCc------EEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCC
Confidence 1111 11111221 00256778899999999999999987754211 122
Q ss_pred ---------------EEEEEcCCCCEEEEEe-------------------------------------CCCcEEEEecCC
Q 008496 495 ---------------YSLAFSPTGEYLASGS-------------------------------------LDKSMHIWSLKE 522 (563)
Q Consensus 495 ---------------~~l~~spdg~~lasgs-------------------------------------~dg~v~iw~~~~ 522 (563)
..++|+|+..+|.+.+ .+|.|..||+.+
T Consensus 374 ~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~t 453 (571)
T 2ad6_A 374 KGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTT 453 (571)
T ss_dssp CEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTT
T ss_pred CceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCC
Confidence 2467888877666543 357899999999
Q ss_pred CeeEEEEecCCCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496 523 GKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR 562 (563)
Q Consensus 523 ~~~~~~~~~~~~i~~l~w~~~g~~la~~~~~~~v~v~~~~ 562 (563)
|+++..+.....+........+..+.++..++.+.+||.+
T Consensus 454 G~~~W~~~~~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~ 493 (571)
T 2ad6_A 454 GKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNK 493 (571)
T ss_dssp CCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETT
T ss_pred CCEEEEecCCCCccceeEEECCCEEEEEcCCCeEEEEECC
Confidence 9998888655444333334456778888889999999864
No 246
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.77 E-value=3e-06 Score=82.26 Aligned_cols=234 Identities=12% Similarity=0.086 Sum_probs=140.3
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEEcCCceeEeecc--------------------CCCCEEEEEeCCCCCEEEEeeCC
Q 008496 277 VTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSK--------------------HKGPIFSLKWNKKGDYLLTGSCD 336 (563)
Q Consensus 277 V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~--------------------h~~~V~~l~~~~~~~~l~s~s~D 336 (563)
..+++|.++|+++.++..++.|..|+..+.....+.. ....+.++++.+++..|+.+...
T Consensus 21 p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~~ 100 (322)
T 2fp8_A 21 PNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCY 100 (322)
T ss_dssp CCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEETT
T ss_pred ceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEECC
Confidence 4567899999978888899999999887643333221 11347889999733456656555
Q ss_pred CcEEEEECCCCceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECC-CCCEEEE
Q 008496 337 KTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP-TGSLLAS 415 (563)
Q Consensus 337 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~-~~~~las 415 (563)
+.+..+|..++.... +.... ... .....+.+++.+ +|++.++
T Consensus 101 ~~i~~~d~~~g~~~~-~~~~~-----------------------------~~~-------~~~~p~~i~~d~~~G~l~v~ 143 (322)
T 2fp8_A 101 YHLSVVGSEGGHATQ-LATSV-----------------------------DGV-------PFKWLYAVTVDQRTGIVYFT 143 (322)
T ss_dssp TEEEEECTTCEECEE-EESEE-----------------------------TTE-------ECSCEEEEEECTTTCCEEEE
T ss_pred CCEEEEeCCCCEEEE-ecccC-----------------------------CCC-------cccccceEEEecCCCEEEEE
Confidence 568888876543211 10000 000 011244566666 6665554
Q ss_pred EeC-----------------CCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeC
Q 008496 416 CSD-----------------DVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDV 478 (563)
Q Consensus 416 ~s~-----------------dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~ 478 (563)
-.. ++.|..||..++....... .......++|+|++. .++++-+..+.|..|++
T Consensus 144 d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~-~~~~p~gia~~~dg~--------~lyv~d~~~~~I~~~~~ 214 (322)
T 2fp8_A 144 DVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLK-ELHVPGGAEVSADSS--------FVLVAEFLSHQIVKYWL 214 (322)
T ss_dssp ESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEE-EESCCCEEEECTTSS--------EEEEEEGGGTEEEEEES
T ss_pred CCcccccccccceehcccCCCceEEEEeCCCCEEEEecc-CCccCcceEECCCCC--------EEEEEeCCCCeEEEEEC
Confidence 322 3667777776554322111 112235678888764 34455566789999998
Q ss_pred CC---Ce--EEEEecCCCCCEEEEEEcCCCCEEEEEeC----------CCcEEEEecCCCeeEEEEecC-----CCEEEE
Q 008496 479 EL---GK--LLYSLNGHREPVYSLAFSPTGEYLASGSL----------DKSMHIWSLKEGKIVKTYTGN-----GGIFEV 538 (563)
Q Consensus 479 ~~---~~--~~~~~~~h~~~i~~l~~spdg~~lasgs~----------dg~v~iw~~~~~~~~~~~~~~-----~~i~~l 538 (563)
.. +. ....+ .+ ...++++++|++.++... .+.|..++. +|+.+..+... ..+..+
T Consensus 215 ~~~~~~~~~~~~~~---~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~ 289 (322)
T 2fp8_A 215 EGPKKGTAEVLVKI---PN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQI 289 (322)
T ss_dssp SSTTTTCEEEEEEC---SS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEE
T ss_pred CCCcCCccceEEeC---CC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEE
Confidence 74 22 22222 23 678999999987776544 467888887 57877777543 235566
Q ss_pred EEcCCCCEEEEEECCCeEEEEEee
Q 008496 539 CWNKEGDKIAACFANHTVCVLDFR 562 (563)
Q Consensus 539 ~w~~~g~~la~~~~~~~v~v~~~~ 562 (563)
++ .+|+..++...++.|.++++.
T Consensus 290 ~~-~~g~L~v~~~~~~~i~~~~~~ 312 (322)
T 2fp8_A 290 QE-HDGLLYIGTLFHGSVGILVYD 312 (322)
T ss_dssp EE-ETTEEEEECSSCSEEEEEEC-
T ss_pred EE-eCCEEEEeecCCCceEEEecc
Confidence 66 356555555667888888764
No 247
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.74 E-value=4.1e-06 Score=88.02 Aligned_cols=265 Identities=11% Similarity=0.053 Sum_probs=156.7
Q ss_pred CEEEEEeC-CCeEEEEEc--CCceeEeeccCCC-----------CEEEEEeCCCCCE----EEEeeCCCcEEEEECCCCc
Q 008496 287 TLLATGSY-DGQARIWST--NGDLKCTLSKHKG-----------PIFSLKWNKKGDY----LLTGSCDKTAIVWDVKTEE 348 (563)
Q Consensus 287 ~~l~sg~~-dg~i~vw~~--~~~~~~~~~~h~~-----------~V~~l~~~~~~~~----l~s~s~D~~v~iwd~~~~~ 348 (563)
..++.++. ++.|..+|. .|+.+-.+..... ....+...|.+.. ++.++.|+.+..+|..+++
T Consensus 63 g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~ 142 (599)
T 1w6s_A 63 GKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGE 142 (599)
T ss_dssp TEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCC
T ss_pred CEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCCC
Confidence 34555555 677777776 4555444322110 0112334333333 8888899999999999998
Q ss_pred eeEEeeecc---------cCeEEEecCCCceEEEEe-----CCCeEEEEEcCCCcceeeecCCCcc--------------
Q 008496 349 WKQQFEFHS---------GPTLDVDWRNNVSFATSS-----TDNMIYVCKIGENRPIKTFAGHQGE-------------- 400 (563)
Q Consensus 349 ~~~~~~~~~---------~~~~~~~~~~~~~~~~~~-----~d~~i~~~~~~~~~~~~~~~~h~~~-------------- 400 (563)
.+-...... .+++ .++..++.++ .++.|+.+|..+++.+-.+......
T Consensus 143 ~~W~~~~~~~~~~~~~~ssP~v----~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~ 218 (599)
T 1w6s_A 143 TVWKVENSDIKVGSTLTIAPYV----VKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNP 218 (599)
T ss_dssp EEEEEECCCGGGTCBCCSCCEE----ETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCG
T ss_pred EEEeecCCCCCccceeecCCEE----ECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccccc
Confidence 765544322 1111 1233333332 3789999998887765544321110
Q ss_pred -----------------------e-eEEEECCCCCEEEEEeCC----------------CcEEEEeCCCCceeeeecccC
Q 008496 401 -----------------------V-NCVKWDPTGSLLASCSDD----------------VTAKIWNMKQDKYVHDLREHS 440 (563)
Q Consensus 401 -----------------------i-~~~~~~~~~~~las~s~d----------------g~i~iwd~~~~~~~~~~~~~~ 440 (563)
+ ..+++++...++..++.+ +.|..+|.++++.+-.++...
T Consensus 219 ~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~ 298 (599)
T 1w6s_A 219 HYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTP 298 (599)
T ss_dssp GGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESST
T ss_pred cccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCC
Confidence 0 134566777777776655 378899999998876554321
Q ss_pred ----------CCEEEEEEc-cCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCC-------------CCCE--
Q 008496 441 ----------KEIYTIRWS-PTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH-------------REPV-- 494 (563)
Q Consensus 441 ----------~~i~~~~~~-p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h-------------~~~i-- 494 (563)
.++. +... .+|. ...+++.++.+|.+.++|.++|+.+....-. ..+|
T Consensus 299 ~d~wd~d~~~~p~l-~d~~~~~G~------~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~ 371 (599)
T 1w6s_A 299 HDEWDYAGVNVMML-SEQKDKDGK------ARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRD 371 (599)
T ss_dssp TCSSCCCCCCCCEE-EEEECTTSC------EEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEEC
T ss_pred CccccccCCCccEE-EeccccCCc------EEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeec
Confidence 1111 1111 1221 0136777899999999999999998765421 1122
Q ss_pred ------------------------EEEEEcCCCCEEEEE---------------------------------e------C
Q 008496 495 ------------------------YSLAFSPTGEYLASG---------------------------------S------L 511 (563)
Q Consensus 495 ------------------------~~l~~spdg~~lasg---------------------------------s------~ 511 (563)
..++|+|+..++.+. + .
T Consensus 372 ~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~ 451 (599)
T 1w6s_A 372 PEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEG 451 (599)
T ss_dssp GGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBC
T ss_pred cccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCC
Confidence 246777776655442 1 3
Q ss_pred CCcEEEEecCCCeeEEEEecCCCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496 512 DKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR 562 (563)
Q Consensus 512 dg~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~g~~la~~~~~~~v~v~~~~ 562 (563)
+|.|..||+.+|+++...........-.....|..|.++..|+.+..||.+
T Consensus 452 ~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~ 502 (599)
T 1w6s_A 452 LGQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSD 502 (599)
T ss_dssp CEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETT
T ss_pred cCeEEEEECCCCCEEeEecCCCCccCcceEecCCEEEEECCCCeEEEEECC
Confidence 578999999999998877543222211122356677778888888888754
No 248
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.72 E-value=3.5e-05 Score=72.42 Aligned_cols=223 Identities=11% Similarity=0.040 Sum_probs=130.6
Q ss_pred CEEEEeeCCCcEEEEECCCCcee-----EEeeecccCeEEEec--CCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcc
Q 008496 328 DYLLTGSCDKTAIVWDVKTEEWK-----QQFEFHSGPTLDVDW--RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGE 400 (563)
Q Consensus 328 ~~l~s~s~D~~v~iwd~~~~~~~-----~~~~~~~~~~~~~~~--~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~ 400 (563)
.+|+.+.. +.|+.+++...... ..+......+..+.| ..+..+++...++.|++++.........+......
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~ 80 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS 80 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCC
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCC
Confidence 34555443 47888887654321 111111122334444 34556677777889999998765443333333346
Q ss_pred eeEEEECCCCC-EEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeC--CCeEEEEe
Q 008496 401 VNCVKWDPTGS-LLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASF--DSTVKLWD 477 (563)
Q Consensus 401 i~~~~~~~~~~-~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~--dg~i~iwd 477 (563)
...+++++++. ++++....+.|.++++........+.........++++|++. .+.++... .+.|..++
T Consensus 81 p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g--------~lyv~~~~~~~~~I~~~~ 152 (267)
T 1npe_A 81 PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRG--------NLYWTDWNRDNPKIETSH 152 (267)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTT--------EEEEEECCSSSCEEEEEE
T ss_pred ccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCC--------EEEEEECCCCCcEEEEEe
Confidence 78999999755 555556678999999875432221222223567888888542 23333333 46888888
Q ss_pred CCCCeEEEEe-cCCCCCEEEEEEcCCCCEEE-EEeCCCcEEEEecCCCeeEEEEecCCCEEEEEEcCCCCEEEEEECCCe
Q 008496 478 VELGKLLYSL-NGHREPVYSLAFSPTGEYLA-SGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHT 555 (563)
Q Consensus 478 ~~~~~~~~~~-~~h~~~i~~l~~spdg~~la-sgs~dg~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~g~~la~~~~~~~ 555 (563)
+.... ...+ .........++++|++.+|. +-...+.|.+++..................++.+ .+..+++...++.
T Consensus 153 ~dg~~-~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~d-~~~lyva~~~~~~ 230 (267)
T 1npe_A 153 MDGTN-RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSY-GKNLYYTDWKTNS 230 (267)
T ss_dssp TTSCC-CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEE-TTEEEEEETTTTE
T ss_pred cCCCC-cEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCCCceEEEEe-CCEEEEEECCCCe
Confidence 76322 2222 12223468899999876664 4455689999999765444444443445677765 3444445556678
Q ss_pred EEEEEe
Q 008496 556 VCVLDF 561 (563)
Q Consensus 556 v~v~~~ 561 (563)
|.++|.
T Consensus 231 v~~~d~ 236 (267)
T 1npe_A 231 VIAMDL 236 (267)
T ss_dssp EEEEET
T ss_pred EEEEeC
Confidence 888875
No 249
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.71 E-value=1.3e-06 Score=89.64 Aligned_cols=216 Identities=11% Similarity=0.054 Sum_probs=138.6
Q ss_pred CCCCEEEEeeC-CCcEEEEECCCCceeEEeeecc-cCeEEEec---CCCce-EEEE-----------------eCCCeEE
Q 008496 325 KKGDYLLTGSC-DKTAIVWDVKTEEWKQQFEFHS-GPTLDVDW---RNNVS-FATS-----------------STDNMIY 381 (563)
Q Consensus 325 ~~~~~l~s~s~-D~~v~iwd~~~~~~~~~~~~~~-~~~~~~~~---~~~~~-~~~~-----------------~~d~~i~ 381 (563)
++|++++.+.. +++|.+.|+.+.++.+.+.... .....+.+ .+... |+.+ ..++.+.
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt 178 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 178 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence 47788776655 5579999999999888665432 22344443 33333 3332 2234678
Q ss_pred EEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCC--------------------------------------cEE
Q 008496 382 VCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDV--------------------------------------TAK 423 (563)
Q Consensus 382 ~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg--------------------------------------~i~ 423 (563)
+.|..+.+.+.++.--. ....++++|+|+++++++.+. .|.
T Consensus 179 vID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~ 257 (595)
T 1fwx_A 179 AVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK 257 (595)
T ss_dssp EEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred EEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEE
Confidence 88888776665554211 345678999999988887553 244
Q ss_pred EEeCCC--Cce-eeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe------------EEEEec
Q 008496 424 IWNMKQ--DKY-VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK------------LLYSLN 488 (563)
Q Consensus 424 iwd~~~--~~~-~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~------------~~~~~~ 488 (563)
|.|..+ ++. +..+.. .....++.++|+|. .+++++..+.+|.++|+.+.+ .+..+.
T Consensus 258 VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk--------~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~ 328 (595)
T 1fwx_A 258 VVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKK--------HLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE 328 (595)
T ss_dssp EEECSGGGCCSSEEEEEE-ESSCCCEEECTTSS--------EEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB
T ss_pred EEeCcccCCceeEEEEec-CCCceEEEEcCCCC--------EEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC
Confidence 555544 222 222211 12234566667664 678888889999999998642 334443
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCC----------CeeEEEEecCCCEEEEE------EcCCCCEEEEEE
Q 008496 489 GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKE----------GKIVKTYTGNGGIFEVC------WNKEGDKIAACF 551 (563)
Q Consensus 489 ~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~----------~~~~~~~~~~~~i~~l~------w~~~g~~la~~~ 551 (563)
- ...-..++|+|+|...++.-.|++|.+||+.+ ..++.....+..+-... .+|||++|.++-
T Consensus 329 v-G~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~N 406 (595)
T 1fwx_A 329 L-GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLS 406 (595)
T ss_dssp C-CSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEE
T ss_pred C-CCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcC
Confidence 2 23458899999995555677899999999987 56777776654443334 479999998873
No 250
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.71 E-value=7.1e-06 Score=76.24 Aligned_cols=189 Identities=11% Similarity=0.097 Sum_probs=127.4
Q ss_pred EEEecCC-CceEEEEeC--CCeEEEEEcCCCcceeeecCCCc-ceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeee
Q 008496 361 LDVDWRN-NVSFATSST--DNMIYVCKIGENRPIKTFAGHQG-EVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDL 436 (563)
Q Consensus 361 ~~~~~~~-~~~~~~~~~--d~~i~~~~~~~~~~~~~~~~h~~-~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~ 436 (563)
..+.+.+ ...+++.+. ++.|.+.|..+++.+..+.-... ....++++. +++.++.-.++.+.++|..+.+.+.++
T Consensus 24 ~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g-~~lyv~t~~~~~v~viD~~t~~v~~~i 102 (266)
T 2iwa_A 24 QGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLN-EKLYQVVWLKNIGFIYDRRTLSNIKNF 102 (266)
T ss_dssp EEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEET-TEEEEEETTCSEEEEEETTTTEEEEEE
T ss_pred ccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeC-CEEEEEEecCCEEEEEECCCCcEEEEE
Confidence 4555555 334444443 67999999999888776542111 223455542 344455556899999999999888777
Q ss_pred cccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCC--CC---CEEEEEEcCCCCEEEEEeC
Q 008496 437 REHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH--RE---PVYSLAFSPTGEYLASGSL 511 (563)
Q Consensus 437 ~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h--~~---~i~~l~~spdg~~lasgs~ 511 (563)
......-..+ ++++. .++++ ..++.|.++|..+.+.+..+.-- .. ..+.+.|. +|..++....
T Consensus 103 ~~g~~~g~gl--t~Dg~--------~l~vs-~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~ 170 (266)
T 2iwa_A 103 THQMKDGWGL--ATDGK--------ILYGS-DGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQ 170 (266)
T ss_dssp ECCSSSCCEE--EECSS--------SEEEE-CSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETT
T ss_pred ECCCCCeEEE--EECCC--------EEEEE-CCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCC
Confidence 5321122233 34443 23444 46889999999998887766421 11 36788888 7866666666
Q ss_pred CCcEEEEecCCCeeEEEEecC--------------CCEEEEEEcCCCCEEEEE-ECCCeEEEEEee
Q 008496 512 DKSMHIWSLKEGKIVKTYTGN--------------GGIFEVCWNKEGDKIAAC-FANHTVCVLDFR 562 (563)
Q Consensus 512 dg~v~iw~~~~~~~~~~~~~~--------------~~i~~l~w~~~g~~la~~-~~~~~v~v~~~~ 562 (563)
++.|.+-|..+++++..+... .....++|+|++++|.++ -....+.++++.
T Consensus 171 ~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~ 236 (266)
T 2iwa_A 171 TDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLH 236 (266)
T ss_dssp SSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEE
T ss_pred CCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEe
Confidence 889999999999999988642 246899999999866655 456788888874
No 251
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.70 E-value=8.8e-06 Score=85.48 Aligned_cols=82 Identities=15% Similarity=0.278 Sum_probs=58.1
Q ss_pred CCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEecCCCEE--EEEEcCCCC-
Q 008496 469 FDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIF--EVCWNKEGD- 545 (563)
Q Consensus 469 ~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~~~i~--~l~w~~~g~- 545 (563)
.+|.|..||+.+++.+++... ..++..-...-.+..++.|+.|+.|+.||.++|+++..+....++. -+.|..+|+
T Consensus 451 ~~G~l~A~D~~tG~~~W~~~~-~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~q 529 (599)
T 1w6s_A 451 GLGQIKAYNAITGDYKWEKME-RFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQ 529 (599)
T ss_dssp CCEEEEEECTTTCCEEEEEEE-SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred CcCeEEEEECCCCCEEeEecC-CCCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCEE
Confidence 458999999999999888752 2222221223356677789999999999999999999887654432 366778887
Q ss_pred EEEEEE
Q 008496 546 KIAACF 551 (563)
Q Consensus 546 ~la~~~ 551 (563)
++++..
T Consensus 530 yv~~~~ 535 (599)
T 1w6s_A 530 YVAIYY 535 (599)
T ss_dssp EEEEEE
T ss_pred EEEEEc
Confidence 444443
No 252
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.67 E-value=0.0002 Score=78.43 Aligned_cols=322 Identities=11% Similarity=0.023 Sum_probs=186.8
Q ss_pred CceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeCC
Q 008496 216 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD 295 (563)
Q Consensus 216 ~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~d 295 (563)
..|.++...++|.+.+ |+..+-+.+++..+........ ... ..+.............|.++...++|.+ -.|+.+
T Consensus 258 ~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~-~~f--~~~~~~~~~~~l~~~~v~~i~~D~~g~l-Wigt~~ 332 (781)
T 3v9f_A 258 SYIFSIKQLKDNKLWI-ATELNGIMILDLQQNQFLLPEQ-IRF--EFIREGDNNYSLSNASARYIFQDSFNNI-WIGTWG 332 (781)
T ss_dssp CCEEEEEECTTSEEEE-EESSSCEEEEETTCC----------C--EEECBCSSTTSBSSSCEEEEEECSSCCE-EEEEBS
T ss_pred ceEEEEEECCCCCEEE-EeCCCCeEEECCCCCeeeeeec-ccc--ccccCCCCCCCCCCCeEEEEEEeCCCCE-EEEecC
Confidence 5688888888877655 4443456777765433210000 000 0000000011123457999999998874 457777
Q ss_pred CeEEEEEcCCceeEeec----------cCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEe---eecccCeEE
Q 008496 296 GQARIWSTNGDLKCTLS----------KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF---EFHSGPTLD 362 (563)
Q Consensus 296 g~i~vw~~~~~~~~~~~----------~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~---~~~~~~~~~ 362 (563)
+-|..++........+. .....|.++...++|. |..|+.++-+..||..++...... ......+.+
T Consensus 333 ~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~ 411 (781)
T 3v9f_A 333 GGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLC 411 (781)
T ss_dssp SCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEE
T ss_pred CeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEE
Confidence 77888887644332221 1235689998888776 445665667888998765433211 112234555
Q ss_pred EecCCCceEEEEeCCCeEEEEEcCCCcceeeec---CCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeccc
Q 008496 363 VDWRNNVSFATSSTDNMIYVCKIGENRPIKTFA---GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREH 439 (563)
Q Consensus 363 ~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~---~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~ 439 (563)
+....+..+..+..++.++.++..+.+. ..+. .....|.++...+++.+.+ |+. +-+.+||..+++........
T Consensus 412 i~~d~~g~lWigt~~~Gl~~~~~~~~~~-~~~~~~~~~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~~ 488 (781)
T 3v9f_A 412 SLKDSEGNLWFGTYLGNISYYNTRLKKF-QIIELEKNELLDVRVFYEDKNKKIWI-GTH-AGVFVIDLASKKVIHHYDTS 488 (781)
T ss_dssp EEECTTSCEEEEETTEEEEEECSSSCEE-EECCSTTTCCCCEEEEEECTTSEEEE-EET-TEEEEEESSSSSCCEEECTT
T ss_pred EEECCCCCEEEEeccCCEEEEcCCCCcE-EEeccCCCCCCeEEEEEECCCCCEEE-EEC-CceEEEeCCCCeEEecccCc
Confidence 5554445555566556677777654432 2222 1345788999988887655 444 45888888776543222111
Q ss_pred -----CCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecC---CCCCEEEEEEcCCCCEEEEEeC
Q 008496 440 -----SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG---HREPVYSLAFSPTGEYLASGSL 511 (563)
Q Consensus 440 -----~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---h~~~i~~l~~spdg~~lasgs~ 511 (563)
...|.++...+++. |-.|+.++-|..||..+++...-... ....|.++...++|.+.++. .
T Consensus 489 ~~~~~~~~i~~i~~d~~g~----------lWigt~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T-~ 557 (781)
T 3v9f_A 489 NSQLLENFVRSIAQDSEGR----------FWIGTFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLAT-G 557 (781)
T ss_dssp TSSCSCSCEEEEEECTTCC----------EEEEESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEE-T
T ss_pred ccccccceeEEEEEcCCCC----------EEEEEcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEE-C
Confidence 35688888777663 33455544477788876654332211 13468999999999866644 4
Q ss_pred CCcEEEEecCCCeeEEEEec-----CCCEEEEEEcCCCCEEEEEECCCeEEEEE
Q 008496 512 DKSMHIWSLKEGKIVKTYTG-----NGGIFEVCWNKEGDKIAACFANHTVCVLD 560 (563)
Q Consensus 512 dg~v~iw~~~~~~~~~~~~~-----~~~i~~l~w~~~g~~la~~~~~~~v~v~~ 560 (563)
.|.|..||..+++. ..+.. ...|.++..+++|+..+++ .+| +..+|
T Consensus 558 ~Glv~~~d~~~~~~-~~~~~~~gl~~~~i~~i~~d~~g~lW~~t-~~G-l~~~~ 608 (781)
T 3v9f_A 558 EGLVCFPSARNFDY-QVFQRKEGLPNTHIRAISEDKNGNIWAST-NTG-ISCYI 608 (781)
T ss_dssp TEEEEESCTTTCCC-EEECGGGTCSCCCCCEEEECSSSCEEEEC-SSC-EEEEE
T ss_pred CCceEEECCCCCcE-EEccccCCCCCceEEEEEECCCCCEEEEc-CCc-eEEEE
Confidence 77558999887764 33432 2246788889888765544 444 55554
No 253
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.66 E-value=4.6e-06 Score=76.62 Aligned_cols=180 Identities=13% Similarity=0.126 Sum_probs=125.5
Q ss_pred EEEEEeCCCCCEEEEeeCCC--cEEEEECCCCceeEEeeecccCe-EEEecCCCceEEEEeCCCeEEEEEcCCCcceeee
Q 008496 318 IFSLKWNKKGDYLLTGSCDK--TAIVWDVKTEEWKQQFEFHSGPT-LDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTF 394 (563)
Q Consensus 318 V~~l~~~~~~~~l~s~s~D~--~v~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~ 394 (563)
..+|.|+ ++....+.+.+| +|+++|+.+++....+....... ..+...++..+++.-.++.++++|..+.+.+.++
T Consensus 45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti 123 (262)
T 3nol_A 45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSF 123 (262)
T ss_dssp EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEE
T ss_pred cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEE
Confidence 4678888 565566666665 89999999999988876544321 2344456677777778999999999998888887
Q ss_pred cCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeccc--C---CCEEEEEEccCCCCCCCCCCcEEEEEEeC
Q 008496 395 AGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREH--S---KEIYTIRWSPTGSGTNNPNQQLILASASF 469 (563)
Q Consensus 395 ~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~--~---~~i~~~~~~p~~~~~~~~~~~~~l~s~s~ 469 (563)
.-.. .-..++ ++++.|+.+..++.|.++|..+.+.+..+... . ..+..+.|. +|. +.+..-.
T Consensus 124 ~~~~-eG~glt--~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~---------lyan~w~ 190 (262)
T 3nol_A 124 NYDG-EGWGLT--HNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGE---------IFANVWQ 190 (262)
T ss_dssp ECSS-CCCCEE--ECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTE---------EEEEETT
T ss_pred ECCC-CceEEe--cCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCE---------EEEEEcc
Confidence 6322 223444 45665555555788999999998877766532 1 223456665 332 4566667
Q ss_pred CCeEEEEeCCCCeEEEEecCC------------CCCEEEEEEcCCCCEEEEEeC
Q 008496 470 DSTVKLWDVELGKLLYSLNGH------------REPVYSLAFSPTGEYLASGSL 511 (563)
Q Consensus 470 dg~i~iwd~~~~~~~~~~~~h------------~~~i~~l~~spdg~~lasgs~ 511 (563)
++.|.+.|..+++.+..+.-. ....+.|||+|+++.|...+.
T Consensus 191 ~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 191 TNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp SSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred CCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 889999999999998876531 123588999999877766554
No 254
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.66 E-value=0.00037 Score=76.36 Aligned_cols=314 Identities=10% Similarity=0.038 Sum_probs=186.0
Q ss_pred CceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeec-ccccCCCCeEEEEECCCCCEEEEEeC
Q 008496 216 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKG-RTNEKSKDVTTLDWNGEGTLLATGSY 294 (563)
Q Consensus 216 ~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~V~~l~~s~~g~~l~sg~~ 294 (563)
..|.++...+++.+.+. +.+ -+.+|+..++.... +..... ........|.++...++|.+. .|+.
T Consensus 211 ~~i~~i~~d~~g~lwig-t~~-Gl~~~d~~~~~~~~-----------~~~~~~~~~~l~~~~i~~i~~d~~g~lW-igt~ 276 (781)
T 3v9f_A 211 NDVRCIYKDTNGNIWIG-TSK-GLALFNANTETFTN-----------FHNNPGNIHGALSSYIFSIKQLKDNKLW-IATE 276 (781)
T ss_dssp SSEEEEEECTTCCEEEE-ETT-EEEEEETTTTEEEC----------------------CCCCEEEEEECTTSEEE-EEES
T ss_pred CceeEEEEcCCCCEEEE-eCC-cHheECCCCCcEEE-----------EEcCCCccccccCceEEEEEECCCCCEE-EEeC
Confidence 46888888888876654 334 57788865432110 000000 001124569999998888754 4666
Q ss_pred CCeEEEEEcCCceeEeec---------------cCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEee-----
Q 008496 295 DGQARIWSTNGDLKCTLS---------------KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFE----- 354 (563)
Q Consensus 295 dg~i~vw~~~~~~~~~~~---------------~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~----- 354 (563)
.+-|.+++........+. -....|.++...++|. |-.|+.++-|..++..+..+.....
T Consensus 277 ~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~ 355 (781)
T 3v9f_A 277 LNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQM 355 (781)
T ss_dssp SSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CC
T ss_pred CCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCcccc
Confidence 456778887654322111 1345799999888886 5556667778899887665433211
Q ss_pred ----ecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeee----cCCCcceeEEEECCCCCEEEEEeCCCcEEEEe
Q 008496 355 ----FHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTF----AGHQGEVNCVKWDPTGSLLASCSDDVTAKIWN 426 (563)
Q Consensus 355 ----~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~----~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd 426 (563)
.....+.++....+..+..++.++-+..++...... ..+ ......|.++...+++.+.+ |+.++-+..++
T Consensus 356 ~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~-~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~ 433 (781)
T 3v9f_A 356 NESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVA-IYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYN 433 (781)
T ss_dssp CSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEE-ECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEEC
T ss_pred ccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeE-EEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEc
Confidence 112345555555545555566556677777654321 111 12345688999988888654 66667788898
Q ss_pred CCCCceeeeec--ccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCC-----CCCEEEEEE
Q 008496 427 MKQDKYVHDLR--EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH-----REPVYSLAF 499 (563)
Q Consensus 427 ~~~~~~~~~~~--~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h-----~~~i~~l~~ 499 (563)
..+++...-.. .....|.++...+++. |-.|+. +-|..||..+++........ ...|.++..
T Consensus 434 ~~~~~~~~~~~~~~~~~~v~~i~~d~~g~----------lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~ 502 (781)
T 3v9f_A 434 TRLKKFQIIELEKNELLDVRVFYEDKNKK----------IWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQ 502 (781)
T ss_dssp SSSCEEEECCSTTTCCCCEEEEEECTTSE----------EEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEE
T ss_pred CCCCcEEEeccCCCCCCeEEEEEECCCCC----------EEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEE
Confidence 87765432211 1345688887766552 333445 56888998776543322211 357999999
Q ss_pred cCCCCEEEEEeCCCcEEEEecCCCeeEEEEec-----CCCEEEEEEcCCCCEEEEEECCCeEEEEE
Q 008496 500 SPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG-----NGGIFEVCWNKEGDKIAACFANHTVCVLD 560 (563)
Q Consensus 500 spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~-----~~~i~~l~w~~~g~~la~~~~~~~v~v~~ 560 (563)
.++|.+.+.....| |..|+..+++.. .+.. ...|.++..+++|...++. .+|-+..||
T Consensus 503 d~~g~lWigt~~~G-l~~~~~~~~~~~-~~~~~~~l~~~~i~~i~~d~~g~lWi~T-~~Glv~~~d 565 (781)
T 3v9f_A 503 DSEGRFWIGTFGGG-VGIYTPDMQLVR-KFNQYEGFCSNTINQIYRSSKGQMWLAT-GEGLVCFPS 565 (781)
T ss_dssp CTTCCEEEEESSSC-EEEECTTCCEEE-EECTTTTCSCSCEEEEEECTTSCEEEEE-TTEEEEESC
T ss_pred cCCCCEEEEEcCCC-EEEEeCCCCeEE-EccCCCCCCCCeeEEEEECCCCCEEEEE-CCCceEEEC
Confidence 99998766433345 788998776543 3432 2458899999999865554 354325554
No 255
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.64 E-value=3.3e-05 Score=74.25 Aligned_cols=225 Identities=12% Similarity=0.100 Sum_probs=134.4
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCC--cEEEEECCCCceeEE
Q 008496 275 KDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDK--TAIVWDVKTEEWKQQ 352 (563)
Q Consensus 275 ~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~--~v~iwd~~~~~~~~~ 352 (563)
.....++|+++|+++++-..++.|..|+.++.....+. ....+.++++.++|+.+++..... .|..+|..+++....
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~ 110 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETL 110 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCceEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEE
Confidence 34678999999998887778899999998886554333 234678999999998655543322 466778777775443
Q ss_pred eeecccC-eEEE-ecCCCceEEEEeCCCeEEEEEcCCCc-ceeee---------cCCCcceeEEEECCCCCEE-EEEeCC
Q 008496 353 FEFHSGP-TLDV-DWRNNVSFATSSTDNMIYVCKIGENR-PIKTF---------AGHQGEVNCVKWDPTGSLL-ASCSDD 419 (563)
Q Consensus 353 ~~~~~~~-~~~~-~~~~~~~~~~~~~d~~i~~~~~~~~~-~~~~~---------~~h~~~i~~~~~~~~~~~l-as~s~d 419 (563)
....... ...+ .|.....+++...++.|++++..... .+... .+.-...+.+ +|+++.| ++-+..
T Consensus 111 ~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~ 188 (306)
T 2p4o_A 111 LTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEK 188 (306)
T ss_dssp EECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTT
T ss_pred EeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCC
Confidence 3221111 1111 25444445555568888888876432 11100 0111234555 7787654 555667
Q ss_pred CcEEEEeCCC-Cce--eeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEE--EecCCCCCE
Q 008496 420 VTAKIWNMKQ-DKY--VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLY--SLNGHREPV 494 (563)
Q Consensus 420 g~i~iwd~~~-~~~--~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~--~~~~h~~~i 494 (563)
+.|..|++.. +.. ...+.. ......+++.++|. +.++....+.|.++|.. ++... .+.......
T Consensus 189 ~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~---------l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p 257 (306)
T 2p4o_A 189 MLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGN---------LYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGS 257 (306)
T ss_dssp TEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCC---------EEEECBTTCCEEEECTT-CCEEEEECGGGTCTTE
T ss_pred CEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCC---------EEEEeCCCCeEEEECCC-CCEEEEeecccccCCc
Confidence 8999999864 221 111110 01223455556553 45555567889999975 65532 233223457
Q ss_pred EEEEEc---CCCCEEEEEeCCC
Q 008496 495 YSLAFS---PTGEYLASGSLDK 513 (563)
Q Consensus 495 ~~l~~s---pdg~~lasgs~dg 513 (563)
++++|. ||+..|..++..+
T Consensus 258 ~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 258 TAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp EEEEECCSTTTTTEEEEEECTT
T ss_pred eEEEEecccCCCCEEEEECCCC
Confidence 999998 8987776665543
No 256
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.62 E-value=8.2e-05 Score=78.17 Aligned_cols=82 Identities=18% Similarity=0.438 Sum_probs=60.0
Q ss_pred CCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEecCCCEE--EEEEcCCCC-
Q 008496 469 FDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIF--EVCWNKEGD- 545 (563)
Q Consensus 469 ~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~~~i~--~l~w~~~g~- 545 (563)
.+|.|..||+.+|+.+++.... .++..-.....+.+++.|+.||.++.||.++|+++..+....++. -+.|..+|+
T Consensus 464 ~~G~l~A~D~~tG~~~W~~~~~-~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~q 542 (582)
T 1flg_A 464 HVGSLRAMDPVSGKVVWEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQ 542 (582)
T ss_dssp CSEEEEEECTTTCCEEEEEEES-SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred CcceEEEEECCCCCEEEEecCC-CCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEE
Confidence 3688999999999998877533 232222222246678889999999999999999999998766554 377888997
Q ss_pred EEEEEE
Q 008496 546 KIAACF 551 (563)
Q Consensus 546 ~la~~~ 551 (563)
++++..
T Consensus 543 Yv~~~~ 548 (582)
T 1flg_A 543 YLGVTV 548 (582)
T ss_dssp EEEEEE
T ss_pred EEEEEc
Confidence 444443
No 257
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.60 E-value=4.6e-05 Score=73.77 Aligned_cols=258 Identities=9% Similarity=0.026 Sum_probs=133.4
Q ss_pred CceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeec-------------ccccCCCCeEEEEE
Q 008496 216 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKG-------------RTNEKSKDVTTLDW 282 (563)
Q Consensus 216 ~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~V~~l~~ 282 (563)
....+++|+|+++++.++..++.|..|+..++... .+..... ........+..+++
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-----------~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~ 87 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-----------DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISY 87 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-----------EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEE
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-----------EEecccccccccccccccchhccccCCCCceEEE
Confidence 34567899999997888888899999986543210 0100000 00001134788999
Q ss_pred CC-CCCEEEEEeCCCeEEEEEcCCceeEeeccC-----CCCEEEEEeCC-CCCEEEEeeCCCcEEEEECCCCceeEEeee
Q 008496 283 NG-EGTLLATGSYDGQARIWSTNGDLKCTLSKH-----KGPIFSLKWNK-KGDYLLTGSCDKTAIVWDVKTEEWKQQFEF 355 (563)
Q Consensus 283 s~-~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h-----~~~V~~l~~~~-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~ 355 (563)
.+ +|+++ .+...+.+..++..+.....+... ......+++.+ +|+..++-.... +.... ..
T Consensus 88 ~~~~g~l~-v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~----~~~~~--~~----- 155 (322)
T 2fp8_A 88 NLQNNQLY-IVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTL----YDDRG--VQ----- 155 (322)
T ss_dssp ETTTTEEE-EEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSS----CCTTC--HH-----
T ss_pred cCCCCcEE-EEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCccc----ccccc--cc-----
Confidence 98 66544 454445588888765433333211 12345666666 665444322110 00000 00
Q ss_pred cccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEE-EEeCCCcEEEEeCCCCc--e
Q 008496 356 HSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLA-SCSDDVTAKIWNMKQDK--Y 432 (563)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~la-s~s~dg~i~iwd~~~~~--~ 432 (563)
..++....++.|+.++....... .+...-...+.++++|+++.|. +-+..+.|.+|++.... .
T Consensus 156 -------------~~~~~~~~~g~v~~~d~~~~~~~-~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~ 221 (322)
T 2fp8_A 156 -------------QIMDTSDKTGRLIKYDPSTKETT-LLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGT 221 (322)
T ss_dssp -------------HHHHHTCCCEEEEEEETTTTEEE-EEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTC
T ss_pred -------------eehcccCCCceEEEEeCCCCEEE-EeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCc
Confidence 00000011223344443322211 1111112356799999998554 44567889999887421 1
Q ss_pred eeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEe---------CCCeEEEEeCCCCeEEEEecCC----CCCEEEEEE
Q 008496 433 VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASAS---------FDSTVKLWDVELGKLLYSLNGH----REPVYSLAF 499 (563)
Q Consensus 433 ~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s---------~dg~i~iwd~~~~~~~~~~~~h----~~~i~~l~~ 499 (563)
...+....+ ...+++.++|. ++++... ..+.|..+|.. ++.+..+... -..++++++
T Consensus 222 ~~~~~~~~g-P~gi~~d~~G~--------l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~ 291 (322)
T 2fp8_A 222 AEVLVKIPN-PGNIKRNADGH--------FWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE 291 (322)
T ss_dssp EEEEEECSS-EEEEEECTTSC--------EEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE
T ss_pred cceEEeCCC-CCCeEECCCCC--------EEEEecCcccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE
Confidence 111111122 56677777653 4444433 14678888874 7766665432 234666776
Q ss_pred cCCCCEEEEEeCCCcEEEEecC
Q 008496 500 SPTGEYLASGSLDKSMHIWSLK 521 (563)
Q Consensus 500 spdg~~lasgs~dg~v~iw~~~ 521 (563)
.+++++++....+.|.++++.
T Consensus 292 -~~g~L~v~~~~~~~i~~~~~~ 312 (322)
T 2fp8_A 292 -HDGLLYIGTLFHGSVGILVYD 312 (322)
T ss_dssp -ETTEEEEECSSCSEEEEEEC-
T ss_pred -eCCEEEEeecCCCceEEEecc
Confidence 466666666667888888875
No 258
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.59 E-value=0.00025 Score=68.81 Aligned_cols=266 Identities=11% Similarity=0.063 Sum_probs=143.4
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEEcCCce-eEeec----cCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCce
Q 008496 275 KDVTTLDWNGEGTLLATGSYDGQARIWSTNGDL-KCTLS----KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEW 349 (563)
Q Consensus 275 ~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~-~~~~~----~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~ 349 (563)
..+.++.+.+.+..+++ +..|.| +...++.. -.... .....+.++.|.+ + .++.++.++.|..-.-....+
T Consensus 36 ~~~~~v~~~~~~~~~~~-G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~-~~~~~g~~g~i~~S~DgG~tW 111 (327)
T 2xbg_A 36 ATILDMSFIDRHHGWLV-GVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-N-EGWIVGEPPIMLHTTDGGQSW 111 (327)
T ss_dssp SCEEEEEESSSSCEEEE-ETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-T-EEEEEEETTEEEEESSTTSSC
T ss_pred CcEEEEEECCCCcEEEE-cCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-C-eEEEEECCCeEEEECCCCCCc
Confidence 46889999888887774 556765 34444421 11111 1244688999876 3 344455566554432112223
Q ss_pred eEEeee--cccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcc-eeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEe
Q 008496 350 KQQFEF--HSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRP-IKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWN 426 (563)
Q Consensus 350 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~-~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd 426 (563)
...... ....+..+...++..+...+.++.|+.-. +.++. .....++...+..+.+.+++.+++.+...+..+-+|
T Consensus 112 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~v~~S~-DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d 190 (327)
T 2xbg_A 112 SQIPLDPKLPGSPRLIKALGNGSAEMITNVGAIYRTK-DSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWE 190 (327)
T ss_dssp EECCCCTTCSSCEEEEEEEETTEEEEEETTCCEEEES-STTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEEC
T ss_pred eECccccCCCCCeEEEEEECCCCEEEEeCCccEEEEc-CCCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeC
Confidence 322111 11233444443333343444455554322 11211 112234456788999999998887765544444455
Q ss_pred C--CCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEec-C---CCCCEEEEEEc
Q 008496 427 M--KQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN-G---HREPVYSLAFS 500 (563)
Q Consensus 427 ~--~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~---h~~~i~~l~~s 500 (563)
. .+...+. ......+..+.+.|++. + ..++.+|.+++++...++.-..+. . +...+.+++|.
T Consensus 191 ~gG~tW~~~~--~~~~~~~~~~~~~~~g~---------~-~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~ 258 (327)
T 2xbg_A 191 PGQTAWEPHN--RTTSRRLHNMGFTPDGR---------L-WMIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYR 258 (327)
T ss_dssp TTCSSCEEEE--CCSSSCEEEEEECTTSC---------E-EEEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEES
T ss_pred CCCCceeECC--CCCCCccceeEECCCCC---------E-EEEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEec
Confidence 3 3333332 23455678888877653 2 345567888777533233322222 1 22358999999
Q ss_pred CCCCEEEEEeCCCcEEEEecCCCeeEEEEec----CCCEEEEEEcCCCCEEEEEECCCeEEEEE
Q 008496 501 PTGEYLASGSLDKSMHIWSLKEGKIVKTYTG----NGGIFEVCWNKEGDKIAACFANHTVCVLD 560 (563)
Q Consensus 501 pdg~~lasgs~dg~v~iw~~~~~~~~~~~~~----~~~i~~l~w~~~g~~la~~~~~~~v~v~~ 560 (563)
|++.+++++. +|.| .+....|+--..... ...++++.|.+++. +.++..+|.+.-++
T Consensus 259 ~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 259 TPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYV 319 (327)
T ss_dssp SSSCEEEEES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEEC
T ss_pred CCCEEEEEeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEc
Confidence 9888777655 6666 444444543222221 24578899986555 55555777765543
No 259
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.57 E-value=4.8e-06 Score=89.37 Aligned_cols=269 Identities=15% Similarity=0.129 Sum_probs=145.6
Q ss_pred EEEECC-CCCEEEEeeCCC-----------cEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCC
Q 008496 220 ACAWSP-AGSLLASGSGDS-----------TARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 287 (563)
Q Consensus 220 ~~~~sp-~~~~latgs~D~-----------~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~ 287 (563)
++++.| ++++++.||.+. .+.+||+.+++... .. .+.. .......++++..+|+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~------~~--~~~~------~~~~~~~~~~~~~~g~ 255 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSD------RT--VTVT------KHDMFCPGISMDGNGQ 255 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCC------CE--EEEC------SCCCSSCEEEECTTSC
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEe------Cc--ccCC------CCCCccccccCCCCCC
Confidence 556777 889999988543 57788877654211 11 0100 1112233467788999
Q ss_pred EEEEEeCC-CeEEEEEcCCceeEeeccCC--CCEEEEEeCCCCCEEEEee-CC-----CcEEEEECCCCceeEEeeeccc
Q 008496 288 LLATGSYD-GQARIWSTNGDLKCTLSKHK--GPIFSLKWNKKGDYLLTGS-CD-----KTAIVWDVKTEEWKQQFEFHSG 358 (563)
Q Consensus 288 ~l~sg~~d-g~i~vw~~~~~~~~~~~~h~--~~V~~l~~~~~~~~l~s~s-~D-----~~v~iwd~~~~~~~~~~~~~~~ 358 (563)
+++.|+.+ ..+.+||.....-..+.... ..-.++...++|+.++.|+ .+ ..+.+||+.+..|...-.....
T Consensus 256 lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~ 335 (656)
T 1k3i_A 256 IVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVN 335 (656)
T ss_dssp EEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSG
T ss_pred EEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCcccc
Confidence 99999854 58999997644322221111 1112445567888888888 44 5799999998887653110000
Q ss_pred CeE-----EEecCCCceEEEEeCC---------CeEEEEEcCCCcceeeecCCC---------cceeEEEEC-CCCCEEE
Q 008496 359 PTL-----DVDWRNNVSFATSSTD---------NMIYVCKIGENRPIKTFAGHQ---------GEVNCVKWD-PTGSLLA 414 (563)
Q Consensus 359 ~~~-----~~~~~~~~~~~~~~~d---------~~i~~~~~~~~~~~~~~~~h~---------~~i~~~~~~-~~~~~la 414 (563)
+.. .+.-.++..++.++.+ ..+..|+.....-......+. ..-.++.+. .++++++
T Consensus 336 p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v 415 (656)
T 1k3i_A 336 PMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILT 415 (656)
T ss_dssp GGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEE
T ss_pred ccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEE
Confidence 100 0111233344444433 345667766544222111111 112344443 3678888
Q ss_pred EEeCCC-----------cEEEEeCCCCceeeee--cccCCCE-EEEEEccCCCCCCCCCCcEEEEEEeCC----------
Q 008496 415 SCSDDV-----------TAKIWNMKQDKYVHDL--REHSKEI-YTIRWSPTGSGTNNPNQQLILASASFD---------- 470 (563)
Q Consensus 415 s~s~dg-----------~i~iwd~~~~~~~~~~--~~~~~~i-~~~~~~p~~~~~~~~~~~~~l~s~s~d---------- 470 (563)
.|+.++ .+.+||..+....... ..+.... .+....|++. +++.|+.+
T Consensus 416 ~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~---------i~v~GG~~~~~~~~~~~~ 486 (656)
T 1k3i_A 416 FGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGS---------TFITGGQRRGIPFEDSTP 486 (656)
T ss_dssp ECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSC---------EEEECCBSBCCTTCCCSB
T ss_pred EeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCC---------EEEECCcccCcCcCCCCc
Confidence 887543 5778887766544322 1122221 2333445543 55666643
Q ss_pred -CeEEEEeCCCCeEEE--EecCCCCCEEEEEEcCCCCEEEEEeC
Q 008496 471 -STVKLWDVELGKLLY--SLNGHREPVYSLAFSPTGEYLASGSL 511 (563)
Q Consensus 471 -g~i~iwd~~~~~~~~--~~~~h~~~i~~l~~spdg~~lasgs~ 511 (563)
..+.+||..+.+-.. .+...+....+..+.|||+.++.||.
T Consensus 487 ~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 487 VFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp CCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred ccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 468999987765322 11112222345567899999999985
No 260
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.52 E-value=0.00022 Score=69.79 Aligned_cols=241 Identities=9% Similarity=0.001 Sum_probs=147.7
Q ss_pred EEEEECCCCCEEEEEeCCCeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEe-eCCCcEEEEECCCCceeEEeee-
Q 008496 278 TTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTG-SCDKTAIVWDVKTEEWKQQFEF- 355 (563)
Q Consensus 278 ~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~-s~D~~v~iwd~~~~~~~~~~~~- 355 (563)
+|.+..+++ +|+.+. ...|+..+.++.....+......+.+++|++.+..|+.. ...+.|..+++........+..
T Consensus 37 ~C~~~~~~~-~ll~~~-~~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~ 114 (349)
T 3v64_C 37 SCKALGPEP-VLLFAN-RIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTG 114 (349)
T ss_dssp CEEESSSCC-EEEEEC-BSCEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS
T ss_pred cccccccCc-eeEeec-ccceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCC
Confidence 454545533 333333 345777787775544443334457899999876666544 4567899999876654333221
Q ss_pred -cccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEE-EEEeCC-CcEEEEeCCCCce
Q 008496 356 -HSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLL-ASCSDD-VTAKIWNMKQDKY 432 (563)
Q Consensus 356 -~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l-as~s~d-g~i~iwd~~~~~~ 432 (563)
....-+.++|.....+++-...+.|.+.+.........+...-...+.++++|.+..| ++-... +.|..+++.....
T Consensus 115 ~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~ 194 (349)
T 3v64_C 115 LESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR 194 (349)
T ss_dssp CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC
T ss_pred CCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCc
Confidence 2223467888888888888888899999987654433333344567899999865544 444444 7788888765433
Q ss_pred eeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCC
Q 008496 433 VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLD 512 (563)
Q Consensus 433 ~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~d 512 (563)
...+...-..-..++++|.+. .+..+-+..+.|..+|+........+.........|++. .+..+.+-...
T Consensus 195 ~~~~~~~~~~PnGla~d~~~~--------~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~ 265 (349)
T 3v64_C 195 RIIADTHLFWPNGLTIDYAGR--------RMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHT 265 (349)
T ss_dssp EESCCSSCSCEEEEEEETTTT--------EEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTT
T ss_pred EEEEECCCCCcceEEEeCCCC--------EEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEE-CCEEEEecCCC
Confidence 222222233467899987643 245555667889999987433222232223345778873 45555555567
Q ss_pred CcEEEEecCCCeeEEEE
Q 008496 513 KSMHIWSLKEGKIVKTY 529 (563)
Q Consensus 513 g~v~iw~~~~~~~~~~~ 529 (563)
+.|..++..+|+.+..+
T Consensus 266 ~~V~~~~~~~G~~~~~i 282 (349)
T 3v64_C 266 KSINSANKFTGKNQEII 282 (349)
T ss_dssp TEEEEEETTTCCSCEEE
T ss_pred CeEEEEEccCCCccEEe
Confidence 88888886677654444
No 261
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.51 E-value=1.7e-05 Score=72.90 Aligned_cols=178 Identities=11% Similarity=0.036 Sum_probs=125.2
Q ss_pred EEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCe-EEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecC
Q 008496 318 IFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPT-LDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAG 396 (563)
Q Consensus 318 V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~ 396 (563)
..+|.|+. +....+.+.+|.|+++|+.+++....+ ...... ..+...++..+++.-.++.++++|..+.+.+.++.-
T Consensus 57 tqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~ 134 (268)
T 3nok_A 57 TQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTRY 134 (268)
T ss_dssp EEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEEC
T ss_pred cceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEeC
Confidence 46788873 555667778889999999999998887 433221 235556677788877899999999999988888764
Q ss_pred CCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeccc--C---CCEEEEEEccCCCCCCCCCCcEEEEEEeCCC
Q 008496 397 HQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREH--S---KEIYTIRWSPTGSGTNNPNQQLILASASFDS 471 (563)
Q Consensus 397 h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~--~---~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg 471 (563)
- ..-..++ ++++.|+.+..++.|.++|..+.+.+..+... . ..+..+.|. +|. +.+....++
T Consensus 135 ~-~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~---------lyanvw~s~ 201 (268)
T 3nok_A 135 S-GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGV---------IYANIWHSS 201 (268)
T ss_dssp S-SCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE---------EEEEETTCS
T ss_pred C-CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCE---------EEEEECCCC
Confidence 2 2223454 45776666666889999999998877766432 1 134556665 332 456666788
Q ss_pred eEEEEeCCCCeEEEEecCC-------------CCCEEEEEEcCCCCEEEEEe
Q 008496 472 TVKLWDVELGKLLYSLNGH-------------REPVYSLAFSPTGEYLASGS 510 (563)
Q Consensus 472 ~i~iwd~~~~~~~~~~~~h-------------~~~i~~l~~spdg~~lasgs 510 (563)
.|.+.|..+++.+..+.-. ..-.+.|||+|+++.|...+
T Consensus 202 ~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 202 DVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp EEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred eEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 9999999999998776421 12458899999875554444
No 262
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.50 E-value=2.7e-05 Score=71.48 Aligned_cols=179 Identities=12% Similarity=0.139 Sum_probs=120.3
Q ss_pred EEEecCCCceEEEEeCCC--eEEEEEcCCCcceeeecCCCcc-eeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeec
Q 008496 361 LDVDWRNNVSFATSSTDN--MIYVCKIGENRPIKTFAGHQGE-VNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLR 437 (563)
Q Consensus 361 ~~~~~~~~~~~~~~~~d~--~i~~~~~~~~~~~~~~~~h~~~-i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~ 437 (563)
..+.+.++..+.+.+.++ .|+++|..+++.+..+.-.... --.++.. .+++.+..-.++.+.+||..+.+.+.++.
T Consensus 46 qGL~~~~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~-g~~ly~ltw~~~~v~v~D~~t~~~~~ti~ 124 (262)
T 3nol_A 46 EGFFYRNGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDW-KDKIVGLTWKNGLGFVWNIRNLRQVRSFN 124 (262)
T ss_dssp EEEEEETTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEE-TTEEEEEESSSSEEEEEETTTCCEEEEEE
T ss_pred ceEEEECCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEe-CCEEEEEEeeCCEEEEEECccCcEEEEEE
Confidence 344555566667777766 8999999998887766533222 1234443 23444445568899999999999888776
Q ss_pred ccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCC--C---CCEEEEEEcCCCCEEEEEeCC
Q 008496 438 EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH--R---EPVYSLAFSPTGEYLASGSLD 512 (563)
Q Consensus 438 ~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h--~---~~i~~l~~spdg~~lasgs~d 512 (563)
... .-..++ +++. .+++| ..++.|.++|..+.+.+.++.-. . ..++.+.|. +|+..|..-.+
T Consensus 125 ~~~-eG~glt--~dg~--------~L~~S-dGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~ 191 (262)
T 3nol_A 125 YDG-EGWGLT--HNDQ--------YLIMS-DGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQT 191 (262)
T ss_dssp CSS-CCCCEE--ECSS--------CEEEC-CSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTS
T ss_pred CCC-CceEEe--cCCC--------EEEEE-CCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccC
Confidence 432 112333 3332 23333 44788999999998887775431 1 234567786 78766666578
Q ss_pred CcEEEEecCCCeeEEEEecC-------------CCEEEEEEcCCCCEEEEEECC
Q 008496 513 KSMHIWSLKEGKIVKTYTGN-------------GGIFEVCWNKEGDKIAACFAN 553 (563)
Q Consensus 513 g~v~iw~~~~~~~~~~~~~~-------------~~i~~l~w~~~g~~la~~~~~ 553 (563)
+.|.+.|.++|+++..+... ...+.+||+|+++.|.+.+..
T Consensus 192 ~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 192 NKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp SEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred CeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence 89999999999999888642 245889999999888776543
No 263
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.50 E-value=5.9e-05 Score=69.26 Aligned_cols=178 Identities=8% Similarity=0.011 Sum_probs=123.0
Q ss_pred EEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccC
Q 008496 361 LDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHS 440 (563)
Q Consensus 361 ~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~ 440 (563)
..+.+.++..+.+.+.++.|+++|+.+++.+..+....-.--.+++.. +++.+..-.++.+.+||..+.+.+.++....
T Consensus 58 qGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~l~~~~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~ 136 (268)
T 3nok_A 58 QGLVFHQGHFFESTGHQGTLRQLSLESAQPVWMERLGNIFAEGLASDG-ERLYQLTWTEGLLFTWSGMPPQRERTTRYSG 136 (268)
T ss_dssp EEEEEETTEEEEEETTTTEEEECCSSCSSCSEEEECTTCCEEEEEECS-SCEEEEESSSCEEEEEETTTTEEEEEEECSS
T ss_pred ceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEECCCCcceeEEEEeC-CEEEEEEccCCEEEEEECCcCcEEEEEeCCC
Confidence 445566677788889999999999998887776521111123455543 3555556678999999999999888776422
Q ss_pred CCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecC--CCC---CEEEEEEcCCCCEEEEEeCCCcE
Q 008496 441 KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG--HRE---PVYSLAFSPTGEYLASGSLDKSM 515 (563)
Q Consensus 441 ~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--h~~---~i~~l~~spdg~~lasgs~dg~v 515 (563)
.-..+++ ++. .+++ +..++.|.++|..+.+.+.++.- +.. .++.+.|. +|+..|..-.+..|
T Consensus 137 -eGwGLt~--Dg~--------~L~v-SdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I 203 (268)
T 3nok_A 137 -EGWGLCY--WNG--------KLVR-SDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDV 203 (268)
T ss_dssp -CCCCEEE--ETT--------EEEE-ECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEE
T ss_pred -ceeEEec--CCC--------EEEE-ECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeE
Confidence 2233432 332 2334 44588999999999988777643 222 34667777 78766666568899
Q ss_pred EEEecCCCeeEEEEecC--------------CCEEEEEEcCCCCEEEEEEC
Q 008496 516 HIWSLKEGKIVKTYTGN--------------GGIFEVCWNKEGDKIAACFA 552 (563)
Q Consensus 516 ~iw~~~~~~~~~~~~~~--------------~~i~~l~w~~~g~~la~~~~ 552 (563)
.+-|.++|+++..+... ...+.+||+|+++.|.+...
T Consensus 204 ~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 204 LEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp EEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred EEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 99999999999888532 24689999999887766543
No 264
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.49 E-value=4.6e-06 Score=85.56 Aligned_cols=182 Identities=9% Similarity=0.070 Sum_probs=122.9
Q ss_pred eEEEEeCCCeEEEEEcCCCcceeeecC-CCcceeEEEE-C-CCCCEEEEEe------------------CCCcEEEEeCC
Q 008496 370 SFATSSTDNMIYVCKIGENRPIKTFAG-HQGEVNCVKW-D-PTGSLLASCS------------------DDVTAKIWNMK 428 (563)
Q Consensus 370 ~~~~~~~d~~i~~~~~~~~~~~~~~~~-h~~~i~~~~~-~-~~~~~las~s------------------~dg~i~iwd~~ 428 (563)
.|+....++.|.+.|+...+..+.+.- ....+..+++ + |+++++++++ .++.+.+.|..
T Consensus 104 lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~ 183 (595)
T 1fwx_A 104 LFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDAD 183 (595)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETT
T ss_pred EEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECC
Confidence 466667778899999988876663321 1234678887 5 9999988874 24578899999
Q ss_pred CCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCC--------------------------------------
Q 008496 429 QDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD-------------------------------------- 470 (563)
Q Consensus 429 ~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~d-------------------------------------- 470 (563)
+.+.+.++..-. .-..++.+|+|. ++++.+.+
T Consensus 184 t~~v~~qI~Vgg-~pd~~~~spdGk---------~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i 253 (595)
T 1fwx_A 184 KWEVAWQVLVSG-NLDNCDADYEGK---------WAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQEL 253 (595)
T ss_dssp TTEEEEEEEESS-CCCCEEECSSSS---------EEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEE
T ss_pred CCeEEEEEEeCC-CccceEECCCCC---------EEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEE
Confidence 887776654322 223455666654 22222222
Q ss_pred CeEEEEeCCC--CeE-EEEecCCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEecCCCe------------eEEEEecCCC
Q 008496 471 STVKLWDVEL--GKL-LYSLNGHREPVYSLAFSPTGEYLASGS-LDKSMHIWSLKEGK------------IVKTYTGNGG 534 (563)
Q Consensus 471 g~i~iwd~~~--~~~-~~~~~~h~~~i~~l~~spdg~~lasgs-~dg~v~iw~~~~~~------------~~~~~~~~~~ 534 (563)
+.|.+.|.++ ++. +..+..- ....++.+||||+++++++ .+.+|.++|+.+.+ ++.......+
T Consensus 254 ~~V~VID~~~~~~~~~~~~Ipvg-~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~g 332 (595)
T 1fwx_A 254 NGVKVVDGRKEASSLFTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLG 332 (595)
T ss_dssp TTEEEEECSGGGCCSSEEEEEEE-SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSC
T ss_pred CcEEEEeCcccCCceeEEEEecC-CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCC
Confidence 2477777776 444 3333221 2346799999999876655 67899999998653 4555555667
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496 535 IFEVCWNKEGDKIAACFANHTVCVLDFR 562 (563)
Q Consensus 535 i~~l~w~~~g~~la~~~~~~~v~v~~~~ 562 (563)
...++|+++|....+.+.+++|.+||+.
T Consensus 333 P~h~aF~~dG~aY~t~~ldsqV~kwdi~ 360 (595)
T 1fwx_A 333 PLHTAFDGRGNAYTSLFLDSQVVKWNIE 360 (595)
T ss_dssp EEEEEECTTSEEEEEETTTTEEEEEEHH
T ss_pred cceEEECCCCeEEEEEecCCcEEEEEhh
Confidence 8999999999544567889999999963
No 265
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.49 E-value=4.8e-05 Score=69.21 Aligned_cols=180 Identities=14% Similarity=0.118 Sum_probs=123.1
Q ss_pred CEEEEEeCCCCCEEEEeeCC--CcEEEEECCCCceeEEeeecccCe-EEEecCCCceEEEEeCCCeEEEEEcCCCcceee
Q 008496 317 PIFSLKWNKKGDYLLTGSCD--KTAIVWDVKTEEWKQQFEFHSGPT-LDVDWRNNVSFATSSTDNMIYVCKIGENRPIKT 393 (563)
Q Consensus 317 ~V~~l~~~~~~~~l~s~s~D--~~v~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~ 393 (563)
-..+|.|++ +....+.+.+ .+|+.+|+.+++............ ..+...++..+.+.-.++.++++|..+.+.+.+
T Consensus 22 ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~t 100 (243)
T 3mbr_X 22 FTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRAR 100 (243)
T ss_dssp CEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTTEEEEE
T ss_pred ccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEEE
Confidence 356889986 4555565554 489999999999988876544321 234444667777777889999999999888888
Q ss_pred ecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccC-----CCEEEEEEccCCCCCCCCCCcEEEEEEe
Q 008496 394 FAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHS-----KEIYTIRWSPTGSGTNNPNQQLILASAS 468 (563)
Q Consensus 394 ~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~-----~~i~~~~~~p~~~~~~~~~~~~~l~s~s 468 (563)
+... +.-..+++ +++.|+.+..++.|.++|..+.+.+..+.... ..+..+.|. +| .+.+..-
T Consensus 101 i~~~-~~Gwglt~--dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G---------~lyanvw 167 (243)
T 3mbr_X 101 FRYP-GEGWALTS--DDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NG---------ELLANVW 167 (243)
T ss_dssp EECS-SCCCEEEE--CSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TT---------EEEEEET
T ss_pred EeCC-CCceEEee--CCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CC---------EEEEEEC
Confidence 7642 23345554 45544444458899999999988776665321 234455654 33 2455555
Q ss_pred CCCeEEEEeCCCCeEEEEecCC-------------CCCEEEEEEcCCCCEEEEEe
Q 008496 469 FDSTVKLWDVELGKLLYSLNGH-------------REPVYSLAFSPTGEYLASGS 510 (563)
Q Consensus 469 ~dg~i~iwd~~~~~~~~~~~~h-------------~~~i~~l~~spdg~~lasgs 510 (563)
.+..|.+.|..+|+.+..+.-. ..-.+.|+|+|++..|...+
T Consensus 168 ~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 168 LTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp TTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred CCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 6889999999999998876411 12458899999876665555
No 266
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.46 E-value=8.3e-05 Score=78.13 Aligned_cols=229 Identities=13% Similarity=0.096 Sum_probs=138.1
Q ss_pred CCEEEEeeCCCcEEEEECCCCceeEEeeecc---------cCeEEEecCCCc-eEEEEe------CCCeEEEEEcCCCcc
Q 008496 327 GDYLLTGSCDKTAIVWDVKTEEWKQQFEFHS---------GPTLDVDWRNNV-SFATSS------TDNMIYVCKIGENRP 390 (563)
Q Consensus 327 ~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~---------~~~~~~~~~~~~-~~~~~~------~d~~i~~~~~~~~~~ 390 (563)
+..++.++.|+.|..+|..+++.+-.+.... .+++.-.-.+.. .++.++ .++.|+.+|..+++.
T Consensus 117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~ 196 (582)
T 1flg_A 117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEE 196 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCE
Confidence 5678888899999999999998776554322 122211100111 333333 267888888877665
Q ss_pred eeeecCCC-----------------------------------------cceeEEEECCCCCEEEEEeC-----------
Q 008496 391 IKTFAGHQ-----------------------------------------GEVNCVKWDPTGSLLASCSD----------- 418 (563)
Q Consensus 391 ~~~~~~h~-----------------------------------------~~i~~~~~~~~~~~las~s~----------- 418 (563)
+-...... ..-..++++|...++..++.
T Consensus 197 ~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~ 276 (582)
T 1flg_A 197 IWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWART 276 (582)
T ss_dssp EEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGS
T ss_pred EeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccc
Confidence 43332110 00023566777777766653
Q ss_pred ---------C----CcEEEEeCCCCceeeeecc--cC--------CCEEEEEEc-cCCCCCCCCCCcEEEEEEeCCCeEE
Q 008496 419 ---------D----VTAKIWNMKQDKYVHDLRE--HS--------KEIYTIRWS-PTGSGTNNPNQQLILASASFDSTVK 474 (563)
Q Consensus 419 ---------d----g~i~iwd~~~~~~~~~~~~--~~--------~~i~~~~~~-p~~~~~~~~~~~~~l~s~s~dg~i~ 474 (563)
| +.|..+|.++++.+-.++. |. .++.. ... .+|. ...+++.++.+|.++
T Consensus 277 ~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~-~~~~~~G~------~~~~v~~~~~~G~l~ 349 (582)
T 1flg_A 277 AKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLF-DYKAKDGK------IVKATAHADRNGFFY 349 (582)
T ss_dssp CTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEE-EEECSSSC------EEEEEEEECTTSEEE
T ss_pred cCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEE-eeecCCCC------EEEEEEEECCCceEE
Confidence 2 5799999999988766542 21 11111 110 1221 013677899999999
Q ss_pred EEeCCCCeEEEEecCCC-------------CCE--------------------------------EEEEEcCCCCEEEEE
Q 008496 475 LWDVELGKLLYSLNGHR-------------EPV--------------------------------YSLAFSPTGEYLASG 509 (563)
Q Consensus 475 iwd~~~~~~~~~~~~h~-------------~~i--------------------------------~~l~~spdg~~lasg 509 (563)
++|..+|+.+....... .++ ..++|+|+...+.+.
T Consensus 350 ~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~ 429 (582)
T 1flg_A 350 VVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVP 429 (582)
T ss_dssp EEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEE
T ss_pred EEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEe
Confidence 99999999987654321 001 135677765554432
Q ss_pred e---------------------------------CCCcEEEEecCCCeeEEEEecCCCEEEEEEcCCCCEEEEEECCCeE
Q 008496 510 S---------------------------------LDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTV 556 (563)
Q Consensus 510 s---------------------------------~dg~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~g~~la~~~~~~~v 556 (563)
. .+|.|..||+.+|+.+........+..-.....|..+.++..|+.+
T Consensus 430 ~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~dg~l 509 (582)
T 1flg_A 430 ANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYF 509 (582)
T ss_dssp EECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEE
T ss_pred chhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECCCCcE
Confidence 2 3688999999999998877654332221222346778888889999
Q ss_pred EEEEee
Q 008496 557 CVLDFR 562 (563)
Q Consensus 557 ~v~~~~ 562 (563)
..||.+
T Consensus 510 ~A~D~~ 515 (582)
T 1flg_A 510 KAFDAK 515 (582)
T ss_dssp EEEETT
T ss_pred EEEECC
Confidence 888864
No 267
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.43 E-value=0.00025 Score=70.50 Aligned_cols=241 Identities=9% Similarity=-0.004 Sum_probs=147.7
Q ss_pred EEEECCCCCEEEEEeCCCeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEe-eCCCcEEEEECCCCceeEEeee--
Q 008496 279 TLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTG-SCDKTAIVWDVKTEEWKQQFEF-- 355 (563)
Q Consensus 279 ~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~-s~D~~v~iwd~~~~~~~~~~~~-- 355 (563)
|.+..+.+ +|+.+. ...|+..+..+.....+......+.+++|++.+..|+.. ...+.|..+++........+..
T Consensus 81 C~~~~~~~-~l~~~~-~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~ 158 (386)
T 3v65_B 81 CKALGPEP-VLLFAN-RIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGL 158 (386)
T ss_dssp EEECSSCC-EEEEEC-BSCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSC
T ss_pred ECCccccc-eeEeec-CccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCC
Confidence 44444433 333333 356788887765444443344557899999876666544 4567899999876654333221
Q ss_pred cccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEE-eCC-CcEEEEeCCCCcee
Q 008496 356 HSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASC-SDD-VTAKIWNMKQDKYV 433 (563)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~-s~d-g~i~iwd~~~~~~~ 433 (563)
....-+.++|.....+++-...+.|.+.++........+...-...+.++++|.+..|... ... +.|..+++......
T Consensus 159 ~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~ 238 (386)
T 3v65_B 159 ESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRR 238 (386)
T ss_dssp SCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE
T ss_pred CCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcE
Confidence 1223467788888888887788888888876544333333334567899999876655444 344 67888887654332
Q ss_pred eeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCC
Q 008496 434 HDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDK 513 (563)
Q Consensus 434 ~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg 513 (563)
......-.....|+++|.+. .+..+-+..+.|..+|+........+.........|++ ..+..+.+-...+
T Consensus 239 ~~~~~~~~~PnGlavd~~~~--------~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~ 309 (386)
T 3v65_B 239 IIADTHLFWPNGLTIDYAGR--------RMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTK 309 (386)
T ss_dssp EEECSSCSCEEEEEEEGGGT--------EEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTT
T ss_pred EEEECCCCCeeeEEEeCCCC--------EEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCC
Confidence 22222233467899987643 34555666788999998643322223222334577888 3445556666678
Q ss_pred cEEEEecCCCeeEEEEe
Q 008496 514 SMHIWSLKEGKIVKTYT 530 (563)
Q Consensus 514 ~v~iw~~~~~~~~~~~~ 530 (563)
.|..++..+|+.+..+.
T Consensus 310 ~V~~~~~~~G~~~~~i~ 326 (386)
T 3v65_B 310 SINSANKFTGKNQEIIR 326 (386)
T ss_dssp EEEEEETTTCCSCEEEE
T ss_pred eEEEEECCCCcceEEEc
Confidence 89999877776655553
No 268
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.42 E-value=0.0016 Score=62.74 Aligned_cols=225 Identities=11% Similarity=0.056 Sum_probs=135.4
Q ss_pred CeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEe-eCCCcEEEEECCC----CceeEEeee--cccCeEEEecCCC
Q 008496 296 GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTG-SCDKTAIVWDVKT----EEWKQQFEF--HSGPTLDVDWRNN 368 (563)
Q Consensus 296 g~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~-s~D~~v~iwd~~~----~~~~~~~~~--~~~~~~~~~~~~~ 368 (563)
..|+..++.+.....+......+.++.|++.+..|+.+ ...+.|..+++.+ ......+.. ....-+.++|...
T Consensus 10 ~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~ 89 (316)
T 1ijq_A 10 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHS 89 (316)
T ss_dssp SSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTT
T ss_pred CeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCC
Confidence 45777887765333333334567899999876665544 4568899999876 222222211 2223566778777
Q ss_pred ceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeC-C-CcEEEEeCCCCceeeeecccCCCEEEE
Q 008496 369 VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD-D-VTAKIWNMKQDKYVHDLREHSKEIYTI 446 (563)
Q Consensus 369 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~-d-g~i~iwd~~~~~~~~~~~~~~~~i~~~ 446 (563)
..+++-...+.|.+++.........+...-.....++++|.+..|..+.. . +.|...++............-.....+
T Consensus 90 ~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~~~~~~P~gl 169 (316)
T 1ijq_A 90 NIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGI 169 (316)
T ss_dssp EEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEE
T ss_pred eEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEECCCCCceEE
Confidence 77888788889999988654433333333356789999986665544433 3 678877776433221112223456788
Q ss_pred EEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe--EEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCe
Q 008496 447 RWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK--LLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGK 524 (563)
Q Consensus 447 ~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~ 524 (563)
+++|++. .+..+-+..+.|..+|+.... .+............|++. .+..+.+-...+.|..++..+|+
T Consensus 170 a~d~~~~--------~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~ 240 (316)
T 1ijq_A 170 TLDLLSG--------RLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGS 240 (316)
T ss_dssp EEETTTT--------EEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCC
T ss_pred EEeccCC--------EEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCc
Confidence 9987653 345555667899999987322 222221122335678875 35555666667899999987776
Q ss_pred eEEEE
Q 008496 525 IVKTY 529 (563)
Q Consensus 525 ~~~~~ 529 (563)
.+..+
T Consensus 241 ~~~~i 245 (316)
T 1ijq_A 241 DVNLL 245 (316)
T ss_dssp CCEEE
T ss_pred ceEEE
Confidence 55444
No 269
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.41 E-value=4e-05 Score=83.45 Aligned_cols=193 Identities=13% Similarity=0.118 Sum_probs=112.4
Q ss_pred CCCC-ceEEEEEC-CCCCEEEEeeC-C----CcEEEEecCCC-CCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECC
Q 008496 213 GHTS-EVCACAWS-PAGSLLASGSG-D----STARIWTIADG-TSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG 284 (563)
Q Consensus 213 ~h~~-~V~~~~~s-p~~~~latgs~-D----~~i~iW~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~ 284 (563)
+|.. .+...+|| |||++||.+.. + ..|+++++.++ .... .. +. .....++|+|
T Consensus 170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~----~~-----~~----------~~~~~~~Wsp 230 (751)
T 2xe4_A 170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIA----DK-----VS----------GTNGEIVWGP 230 (751)
T ss_dssp TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCC----CC-----EE----------EECSCCEECS
T ss_pred CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCC----cc-----cc----------CceeeEEEec
Confidence 4443 67889999 99998886542 2 35999999876 4210 00 00 0123578999
Q ss_pred CCCEEEEEeCC-----CeEEEEEcCCce---eEeec-cCCCCEEEEEeCCCCCEEEEeeC---CCcEEEEECCCC--ce-
Q 008496 285 EGTLLATGSYD-----GQARIWSTNGDL---KCTLS-KHKGPIFSLKWNKKGDYLLTGSC---DKTAIVWDVKTE--EW- 349 (563)
Q Consensus 285 ~g~~l~sg~~d-----g~i~vw~~~~~~---~~~~~-~h~~~V~~l~~~~~~~~l~s~s~---D~~v~iwd~~~~--~~- 349 (563)
||+.|+....+ ..|.++++.+.. ...+. ....-..++.|+|+|++|+..+. ...|.++|+.++ ..
T Consensus 231 Dg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~ 310 (751)
T 2xe4_A 231 DHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNT 310 (751)
T ss_dssp STTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCC
T ss_pred CCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCce
Confidence 99988877765 257777776532 12222 22344678899999999876553 335788898765 23
Q ss_pred -eEEeeecccCeEEEecCCCceEEEE-eCC----CeEEEEEcCCCcceee-ecCCCc--ceeEEEECCCCCEEEEEeCCC
Q 008496 350 -KQQFEFHSGPTLDVDWRNNVSFATS-STD----NMIYVCKIGENRPIKT-FAGHQG--EVNCVKWDPTGSLLASCSDDV 420 (563)
Q Consensus 350 -~~~~~~~~~~~~~~~~~~~~~~~~~-~~d----~~i~~~~~~~~~~~~~-~~~h~~--~i~~~~~~~~~~~las~s~dg 420 (563)
.........+...++|..+..|+.. ..+ ..|+.+++........ +..|.. .+..+.+. .+.++++...++
T Consensus 311 ~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g 389 (751)
T 2xe4_A 311 LEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAG 389 (751)
T ss_dssp EEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETT
T ss_pred eEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCC
Confidence 2222233445566665445444433 322 3677777754222222 223333 45566665 345667777788
Q ss_pred cEEEE
Q 008496 421 TAKIW 425 (563)
Q Consensus 421 ~i~iw 425 (563)
..+||
T Consensus 390 ~~~l~ 394 (751)
T 2xe4_A 390 LTRIW 394 (751)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 65554
No 270
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.41 E-value=0.00011 Score=66.81 Aligned_cols=178 Identities=11% Similarity=0.057 Sum_probs=121.6
Q ss_pred EEEecCCCceEEEEeCC--CeEEEEEcCCCcceeeecCCCcc-eeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeec
Q 008496 361 LDVDWRNNVSFATSSTD--NMIYVCKIGENRPIKTFAGHQGE-VNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLR 437 (563)
Q Consensus 361 ~~~~~~~~~~~~~~~~d--~~i~~~~~~~~~~~~~~~~h~~~-i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~ 437 (563)
..+.+.++..+.+.+.+ ..|+++|..+++.+....-.... --.++.. .+++.+..-.++.+.+||..+.+.+.++.
T Consensus 24 qGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~-~~~ly~ltw~~~~v~v~D~~tl~~~~ti~ 102 (243)
T 3mbr_X 24 EGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW-RDRLIQLTWRNHEGFVYDLATLTPRARFR 102 (243)
T ss_dssp EEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE-TTEEEEEESSSSEEEEEETTTTEEEEEEE
T ss_pred ccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe-CCEEEEEEeeCCEEEEEECCcCcEEEEEe
Confidence 35566666667777765 48999999998887766533221 1234443 24455555668999999999999888876
Q ss_pred ccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecC--CC---CCEEEEEEcCCCCEEEEEeCC
Q 008496 438 EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG--HR---EPVYSLAFSPTGEYLASGSLD 512 (563)
Q Consensus 438 ~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--h~---~~i~~l~~spdg~~lasgs~d 512 (563)
... .-..+++ ++. .+++| ..++.|.++|..+.+.+.++.- +. ..++.+.|. +|+.+|..-.+
T Consensus 103 ~~~-~Gwglt~--dg~--------~L~vS-dgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s 169 (243)
T 3mbr_X 103 YPG-EGWALTS--DDS--------HLYMS-DGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLT 169 (243)
T ss_dssp CSS-CCCEEEE--CSS--------CEEEE-CSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTT
T ss_pred CCC-CceEEee--CCC--------EEEEE-CCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCC
Confidence 432 2234443 332 23444 4588999999999888776643 21 235666765 77766666567
Q ss_pred CcEEEEecCCCeeEEEEecC--------------CCEEEEEEcCCCCEEEEEEC
Q 008496 513 KSMHIWSLKEGKIVKTYTGN--------------GGIFEVCWNKEGDKIAACFA 552 (563)
Q Consensus 513 g~v~iw~~~~~~~~~~~~~~--------------~~i~~l~w~~~g~~la~~~~ 552 (563)
..|.+.|.++|+++..+... ...+.+||+|+++.|.+.+.
T Consensus 170 ~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 170 SRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp TEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred CeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 89999999999999888621 24679999999988777644
No 271
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.36 E-value=0.0005 Score=65.90 Aligned_cols=224 Identities=10% Similarity=-0.018 Sum_probs=129.5
Q ss_pred CCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCCc-eEEEEeCC-C-eEEEEEcCCCccee
Q 008496 316 GPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV-SFATSSTD-N-MIYVCKIGENRPIK 392 (563)
Q Consensus 316 ~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d-~-~i~~~~~~~~~~~~ 392 (563)
....+++|+++|+.+++-..++.|..||.... ....+.. ...+..+.+..+. .+++.... + .|+.++...++...
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~~-~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~ 109 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHATV-EGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVET 109 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEEC-SSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEeC-CCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEE
Confidence 34578999999986666667889999997653 3333322 2334555554433 33333322 2 46666655444322
Q ss_pred eec-CCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCce-eeeec---------ccCCCEEEEEEccCCCCCCCCCCc
Q 008496 393 TFA-GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY-VHDLR---------EHSKEIYTIRWSPTGSGTNNPNQQ 461 (563)
Q Consensus 393 ~~~-~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~-~~~~~---------~~~~~i~~~~~~p~~~~~~~~~~~ 461 (563)
... ........++..+.+..+++.+.++.|.++|..++.. +.... ..-.....+ +|++.
T Consensus 110 ~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~-------- 179 (306)
T 2p4o_A 110 LLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGN-------- 179 (306)
T ss_dssp EEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETT--------
T ss_pred EEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCC--------
Confidence 111 1122334555556666666665688888888765421 11000 001122333 44442
Q ss_pred EEEEEEeCCCeEEEEeCCC-CeE--EEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEE--EecC-CCE
Q 008496 462 LILASASFDSTVKLWDVEL-GKL--LYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKT--YTGN-GGI 535 (563)
Q Consensus 462 ~~l~s~s~dg~i~iwd~~~-~~~--~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~--~~~~-~~i 535 (563)
.++++-+..+.|..+++.. ++. ...+... .....++++++|+++++....+.|.+++.. |++... .... ...
T Consensus 180 ~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~-~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p 257 (306)
T 2p4o_A 180 FLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ-TNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGS 257 (306)
T ss_dssp EEEEEETTTTEEEEEEBCTTSCBCCCEEEEES-CCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTE
T ss_pred EEEEEeCCCCEEEEEEeCCCCCCCccEEEecc-CCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCc
Confidence 4566677788999999864 321 1111101 224568999999988877778899999975 665332 2222 458
Q ss_pred EEEEEc---CCCCEEEEEECC
Q 008496 536 FEVCWN---KEGDKIAACFAN 553 (563)
Q Consensus 536 ~~l~w~---~~g~~la~~~~~ 553 (563)
.+++|. ++++.|.++...
T Consensus 258 ~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 258 TAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp EEEEECCSTTTTTEEEEEECT
T ss_pred eEEEEecccCCCCEEEEECCC
Confidence 899999 898888777543
No 272
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.32 E-value=0.00049 Score=69.38 Aligned_cols=238 Identities=11% Similarity=0.140 Sum_probs=140.6
Q ss_pred CeEEEEECC-CCCEEEEEeCCCeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCC-C---cEEEEECCCCcee
Q 008496 276 DVTTLDWNG-EGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCD-K---TAIVWDVKTEEWK 350 (563)
Q Consensus 276 ~V~~l~~s~-~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D-~---~v~iwd~~~~~~~ 350 (563)
....|+|+| ++..|..+...+.|+.++..+.....+.........++|+++|++|+.+... + ...+|-...+.+.
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~ 217 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFK 217 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTSC
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCcee
Confidence 457889998 3555555555588999998876555554455567899999999976666542 1 1122211111110
Q ss_pred EEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECC-CCCEEEEEeCCCcEEEEeCCC
Q 008496 351 QQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP-TGSLLASCSDDVTAKIWNMKQ 429 (563)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~-~~~~las~s~dg~i~iwd~~~ 429 (563)
.. ..+.. ......++++| ++.++++-..++.|..++...
T Consensus 218 ~~------------------------------------~~l~~----~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~ 257 (430)
T 3tc9_A 218 VI------------------------------------TELTK----GQNCNGAETHPINGELYFNSWNAGQVFRYDFTT 257 (430)
T ss_dssp SE------------------------------------EEEEE----CSSCCCEEECTTTCCEEEEETTTTEEEEEETTT
T ss_pred ee------------------------------------eeecc----CCCceEEEEeCCCCEEEEEECCCCEEEEEECCC
Confidence 00 00001 12345688899 777777776788899999876
Q ss_pred Cceeeeecc-cCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC--CeE--EEEecCC--------------
Q 008496 430 DKYVHDLRE-HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL--GKL--LYSLNGH-------------- 490 (563)
Q Consensus 430 ~~~~~~~~~-~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~--~~~--~~~~~~h-------------- 490 (563)
......... ....-..++|+|++. .++++-...+.|..++... +.. +..+.+.
T Consensus 258 ~~~~~~~~~~~~~~P~gia~~pdG~--------~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a 329 (430)
T 3tc9_A 258 QETTPLFTIQDSGWEFHIQFHPSGN--------YAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKA 329 (430)
T ss_dssp TEEEEEEECSSSSCCEEEEECTTSS--------EEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGC
T ss_pred CcEEEEEEcCCCCcceeEEEcCCCC--------EEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcce
Confidence 654221111 123456889998874 3455666778899987652 222 1111111
Q ss_pred --CCCEEEEEEc--------CCCCEEEEEeCCCcEEEEecCCCeeEEEEec---------CC---------CEEEEEEcC
Q 008496 491 --REPVYSLAFS--------PTGEYLASGSLDKSMHIWSLKEGKIVKTYTG---------NG---------GIFEVCWNK 542 (563)
Q Consensus 491 --~~~i~~l~~s--------pdg~~lasgs~dg~v~iw~~~~~~~~~~~~~---------~~---------~i~~l~w~~ 542 (563)
..|--.++.. ++|.++++=...++|+.++ .+|.+...... .+ ....|++++
T Consensus 330 ~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~-~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~ 408 (430)
T 3tc9_A 330 RMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILT-PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDE 408 (430)
T ss_dssp BBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEEC-TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEET
T ss_pred EeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEEC-CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEEC
Confidence 1121145553 4466666666677899998 45654433311 11 367999999
Q ss_pred C-CCEEEEEECCCeEEEEEee
Q 008496 543 E-GDKIAACFANHTVCVLDFR 562 (563)
Q Consensus 543 ~-g~~la~~~~~~~v~v~~~~ 562 (563)
+ |..+++-..+..|..++..
T Consensus 409 ~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 409 ERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp TTTEEEEEEGGGTEEEEEEEC
T ss_pred CCCEEEEEECCCCeEEEEccC
Confidence 5 6666666778889888753
No 273
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.30 E-value=4.3e-05 Score=83.24 Aligned_cols=226 Identities=11% Similarity=0.042 Sum_probs=118.0
Q ss_pred CeEEEEEC-CCCCEEEEEeC-CC----eEEEEEcCCc-eeEeeccC-CCCEEEEEeCCCCCEEEEeeCCC-----cEEEE
Q 008496 276 DVTTLDWN-GEGTLLATGSY-DG----QARIWSTNGD-LKCTLSKH-KGPIFSLKWNKKGDYLLTGSCDK-----TAIVW 342 (563)
Q Consensus 276 ~V~~l~~s-~~g~~l~sg~~-dg----~i~vw~~~~~-~~~~~~~h-~~~V~~l~~~~~~~~l~s~s~D~-----~v~iw 342 (563)
.+...+|| |||++|+.+.. +| .|+++++.+. .. +..+ .....++.|+|+|+.|+....|. .|.++
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~--l~~~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~ 252 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQT--IADKVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRH 252 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCC--CCCCEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEe--CCccccCceeeEEEecCCCEEEEEEECCCCCCCEEEEE
Confidence 57788999 99998886543 33 4999998765 31 1111 11124678999999888776552 23333
Q ss_pred ECCCCceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeec-CCCcceeEEEECCCCCEEEEEeC---
Q 008496 343 DVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFA-GHQGEVNCVKWDPTGSLLASCSD--- 418 (563)
Q Consensus 343 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~-~h~~~i~~~~~~~~~~~las~s~--- 418 (563)
++.++.. .....+. .+......+.|+|||++|+..+.
T Consensus 253 ~lgt~~~---------------------------------------~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~ 293 (751)
T 2xe4_A 253 VMGKLQS---------------------------------------EDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPE 293 (751)
T ss_dssp ETTSCGG---------------------------------------GCEEEEECCCTTCEEEEEECTTSSEEEEEEECSS
T ss_pred ECCCCch---------------------------------------hcEEEEecCCCceEEEEEECCCCCEEEEEecCCC
Confidence 3322210 0111221 12223457899999998876553
Q ss_pred CCcEEEEeCCCCc-ee--eeec-ccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCC----CeEEEEeCCCCeEEEE-ecC
Q 008496 419 DVTAKIWNMKQDK-YV--HDLR-EHSKEIYTIRWSPTGSGTNNPNQQLILASASFD----STVKLWDVELGKLLYS-LNG 489 (563)
Q Consensus 419 dg~i~iwd~~~~~-~~--~~~~-~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~d----g~i~iwd~~~~~~~~~-~~~ 489 (563)
...|.++|+.++. .. ..+. ......+++.|...+ .+++....+ ..|..+|+.++..... +..
T Consensus 294 ~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~---------~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~ 364 (751)
T 2xe4_A 294 TAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTS---------HLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVD 364 (751)
T ss_dssp CEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTT---------EEEEEECTTTCTTCEEEEEETTSTTCCCCEEEC
T ss_pred CceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCC---------EEEEEeCCCCCCCcEEEEEcCCCcccceeeEEC
Confidence 3467788887652 11 2232 233445555543322 234444433 3566677764211112 222
Q ss_pred CCC--CEEEEEEcCCCCEEEEEeCCCc--EEEEec-------CCCeeEEEE--ecCCCEEEEEE----cCCCCEEEEEEC
Q 008496 490 HRE--PVYSLAFSPTGEYLASGSLDKS--MHIWSL-------KEGKIVKTY--TGNGGIFEVCW----NKEGDKIAACFA 552 (563)
Q Consensus 490 h~~--~i~~l~~spdg~~lasgs~dg~--v~iw~~-------~~~~~~~~~--~~~~~i~~l~w----~~~g~~la~~~~ 552 (563)
+.. .+..+++. .+.++++...++. |.++++ .+++.+..+ .....+..+.| +++++.|+..+.
T Consensus 365 ~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl~~~~~~~~~g~~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~s 443 (751)
T 2xe4_A 365 HSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMADSQDGVFKAGTGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYS 443 (751)
T ss_dssp CCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEECCTTTSCCCTTTCCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEE
T ss_pred CCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEecccccccccCCccceEECCCCceeEEEeccCcccCCCCCEEEEEEe
Confidence 333 34455554 2344556667775 555564 344412333 22333456655 457776655443
No 274
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.26 E-value=0.0025 Score=63.54 Aligned_cols=233 Identities=12% Similarity=0.067 Sum_probs=142.4
Q ss_pred EEEEEeCCCeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEee-CCCcEEEEECCCC----ceeEEee--ecccCe
Q 008496 288 LLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGS-CDKTAIVWDVKTE----EWKQQFE--FHSGPT 360 (563)
Q Consensus 288 ~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s-~D~~v~iwd~~~~----~~~~~~~--~~~~~~ 360 (563)
+|+.+. ...|+..++++.....+......+.+|+|++.+..|+-.. ..+.|..+++... .....+. .....-
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~g 163 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG 163 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEE
T ss_pred eeEEec-cceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCccc
Confidence 344433 4678888887765444444556788999998776666554 5678888888652 1222222 111234
Q ss_pred EEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEe-C-CCcEEEEeCCCCceeeeecc
Q 008496 361 LDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS-D-DVTAKIWNMKQDKYVHDLRE 438 (563)
Q Consensus 361 ~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s-~-dg~i~iwd~~~~~~~~~~~~ 438 (563)
+.++|.....+++-...+.|.+.++........+...-.....|+++|.+..|.... . .+.|...++........+..
T Consensus 164 lavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~ 243 (400)
T 3p5b_L 164 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTE 243 (400)
T ss_dssp EEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECS
T ss_pred EEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEEC
Confidence 678888888888888888999988876554444443444578999999666554443 2 46788888765443322222
Q ss_pred cCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEec--CCCCCEEEEEEcCCCCEEEEEeCCCcEE
Q 008496 439 HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN--GHREPVYSLAFSPTGEYLASGSLDKSMH 516 (563)
Q Consensus 439 ~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~h~~~i~~l~~spdg~~lasgs~dg~v~ 516 (563)
.-.....|+++|.+. .+..+-+..+.|..+|+........+. +.......|++. .+..+.+-...+.|.
T Consensus 244 ~l~~P~glavd~~~~--------~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~ 314 (400)
T 3p5b_L 244 NIQWPNGITLDLLSG--------RLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIF 314 (400)
T ss_dssp SCSCEEEEEEETTTT--------EEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEE
T ss_pred CCCceEEEEEEeCCC--------EEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEE
Confidence 234567888887653 244455567889999986433222222 122334677773 334555556678899
Q ss_pred EEecCCCeeEEEEe
Q 008496 517 IWSLKEGKIVKTYT 530 (563)
Q Consensus 517 iw~~~~~~~~~~~~ 530 (563)
.++..+|+.+..+.
T Consensus 315 ~~~~~~G~~~~~i~ 328 (400)
T 3p5b_L 315 SANRLTGSDVNLLA 328 (400)
T ss_dssp EEESSSCCCCEEEE
T ss_pred EEEcCCCCceEEEe
Confidence 99987776555543
No 275
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.25 E-value=0.0017 Score=62.41 Aligned_cols=226 Identities=9% Similarity=0.016 Sum_probs=136.6
Q ss_pred CCeEEEEEcCCce--eEeeccCCCCEEEEEeCCCCCEEE-EeeCCCcEEEEECCCCceeE-Eee--ecccCeEEEecCCC
Q 008496 295 DGQARIWSTNGDL--KCTLSKHKGPIFSLKWNKKGDYLL-TGSCDKTAIVWDVKTEEWKQ-QFE--FHSGPTLDVDWRNN 368 (563)
Q Consensus 295 dg~i~vw~~~~~~--~~~~~~h~~~V~~l~~~~~~~~l~-s~s~D~~v~iwd~~~~~~~~-~~~--~~~~~~~~~~~~~~ 368 (563)
...|+..++++.. ...+......+.++.|++.+..|+ +-...+.|..+++....... .+. .....-+.++|...
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g 91 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGE 91 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTT
T ss_pred cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCC
Confidence 4578888877642 112222223467899998665555 44556789999987653211 111 12233477888888
Q ss_pred ceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEe--CCCcEEEEeCCCCceeeeecccCCCEEEE
Q 008496 369 VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS--DDVTAKIWNMKQDKYVHDLREHSKEIYTI 446 (563)
Q Consensus 369 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s--~dg~i~iwd~~~~~~~~~~~~~~~~i~~~ 446 (563)
..+++-...+.|.+++.........+.......+.++++|.+..|..+. ..+.|...++........+...-..-..+
T Consensus 92 ~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pngl 171 (318)
T 3sov_A 92 KLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGL 171 (318)
T ss_dssp EEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEE
T ss_pred eEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEE
Confidence 8888888888999999876543333333445678999998765555444 35678777776433222122222345788
Q ss_pred EEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeE
Q 008496 447 RWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIV 526 (563)
Q Consensus 447 ~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~ 526 (563)
+++|++. .+..+-+..+.|..+|+........+.+.......+++.. +..+.+-...+.|..++..+|+..
T Consensus 172 avd~~~~--------~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~~ 242 (318)
T 3sov_A 172 TLDYEEQ--------KLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDWSTHSILACNKYTGEGL 242 (318)
T ss_dssp EEETTTT--------EEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSC
T ss_pred EEeccCC--------EEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCCce
Confidence 9988543 2445556678899999863322222222333456777753 344555556788999998777654
Q ss_pred EEE
Q 008496 527 KTY 529 (563)
Q Consensus 527 ~~~ 529 (563)
..+
T Consensus 243 ~~i 245 (318)
T 3sov_A 243 REI 245 (318)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
No 276
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.21 E-value=0.0001 Score=79.07 Aligned_cols=263 Identities=10% Similarity=0.026 Sum_probs=144.1
Q ss_pred EEEECC-CCCEEEEEeCCC-----------eEEEEEcCCceeE---eec-cCCCCEEEEEeCCCCCEEEEeeC-CCcEEE
Q 008496 279 TLDWNG-EGTLLATGSYDG-----------QARIWSTNGDLKC---TLS-KHKGPIFSLKWNKKGDYLLTGSC-DKTAIV 341 (563)
Q Consensus 279 ~l~~s~-~g~~l~sg~~dg-----------~i~vw~~~~~~~~---~~~-~h~~~V~~l~~~~~~~~l~s~s~-D~~v~i 341 (563)
.+++.+ +|++++.|+.+. .+.+||....... .+. .+..-..++++..+++.++.|+. +..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 456666 889999988653 5788887543221 121 12222335667789999898884 468999
Q ss_pred EECCCCceeEEeeecccCe-EEEecC-CCceEEEEe-CC-----CeEEEEEcCCCcceee-------ecCCCcceeEEEE
Q 008496 342 WDVKTEEWKQQFEFHSGPT-LDVDWR-NNVSFATSS-TD-----NMIYVCKIGENRPIKT-------FAGHQGEVNCVKW 406 (563)
Q Consensus 342 wd~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~-~d-----~~i~~~~~~~~~~~~~-------~~~h~~~i~~~~~ 406 (563)
||+.+.+|...-....... ...... ++..++.++ .+ ..+.+|+..+..-... +..... ...+
T Consensus 270 yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~---~~~~ 346 (656)
T 1k3i_A 270 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADK---QGLY 346 (656)
T ss_dssp EEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCT---TGGG
T ss_pred ecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccc---ccee
Confidence 9999888776433222211 122223 566677766 33 4578888765431111 000000 0112
Q ss_pred CCCCCEEEEEeCCC---------cEEEEeCCCCceeeeecccCC---------CEEEEEEccCCCCCCCCCCcEEEEEEe
Q 008496 407 DPTGSLLASCSDDV---------TAKIWNMKQDKYVHDLREHSK---------EIYTIRWSPTGSGTNNPNQQLILASAS 468 (563)
Q Consensus 407 ~~~~~~las~s~dg---------~i~iwd~~~~~~~~~~~~~~~---------~i~~~~~~p~~~~~~~~~~~~~l~s~s 468 (563)
..++++++.|+.+| .+..||..+.........+.. .-.++.+...+ . .+++.|+
T Consensus 347 ~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~-------~-~i~v~GG 418 (656)
T 1k3i_A 347 RSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVK-------G-KILTFGG 418 (656)
T ss_dssp TTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTT-------T-EEEEECC
T ss_pred ecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCC-------C-eEEEEeC
Confidence 24555555565444 467788776654322211110 12233332211 1 3566666
Q ss_pred CCC-----------eEEEEeCCCCeEEEEe--cCCCCC-EEEEEEcCCCCEEEEEeCC-----------CcEEEEecCCC
Q 008496 469 FDS-----------TVKLWDVELGKLLYSL--NGHREP-VYSLAFSPTGEYLASGSLD-----------KSMHIWSLKEG 523 (563)
Q Consensus 469 ~dg-----------~i~iwd~~~~~~~~~~--~~h~~~-i~~l~~spdg~~lasgs~d-----------g~v~iw~~~~~ 523 (563)
.++ .|.+||..+..-.... ...... -.+++..|+|++++.|+.+ ..+.+||..+.
T Consensus 419 ~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~ 498 (656)
T 1k3i_A 419 SPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQD 498 (656)
T ss_dssp BSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGT
T ss_pred CCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCC
Confidence 432 6888888766543322 111111 2345677999999999864 46899999876
Q ss_pred eeEEEEec---CCCEEEEEEcCCCCEEEEEEC
Q 008496 524 KIVKTYTG---NGGIFEVCWNKEGDKIAACFA 552 (563)
Q Consensus 524 ~~~~~~~~---~~~i~~l~w~~~g~~la~~~~ 552 (563)
+-...-.. ...-......++|+.+++|+.
T Consensus 499 ~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 499 TFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp EEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred ceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 53221111 111123456799999999864
No 277
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.18 E-value=0.0055 Score=64.68 Aligned_cols=326 Identities=9% Similarity=0.032 Sum_probs=170.4
Q ss_pred CceEEEEECCCCCEEEEe-eCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCC-EEEEEe
Q 008496 216 SEVCACAWSPAGSLLASG-SGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT-LLATGS 293 (563)
Q Consensus 216 ~~V~~~~~sp~~~~latg-s~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~-~l~sg~ 293 (563)
..+.+++|++.+..|+.. ...+.|..+++...... ...+ .........|++.+.+. +.++-.
T Consensus 40 ~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~---------~~v~-------~~~~~~P~GlAvD~~~~~ly~~d~ 103 (619)
T 3s94_A 40 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESV---------QNVV-------VSGLLSPDGLACDWLGEKLYWTDS 103 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEEC-----C---------EEEE-------CSSCSCEEEEEEETTTTEEEEEET
T ss_pred CceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCce---------EEEE-------eCCCCCcCeEEEEecCCEEEEEeC
Confidence 456789999976655544 45677888876532100 0000 01123477888888554 555555
Q ss_pred CCCeEEEEEcCCceeEeec-cCCCCEEEEEeCCCCCEEEEeeC--CCcEEEEECCCCceeEEeeecc--cCeEEEecCCC
Q 008496 294 YDGQARIWSTNGDLKCTLS-KHKGPIFSLKWNKKGDYLLTGSC--DKTAIVWDVKTEEWKQQFEFHS--GPTLDVDWRNN 368 (563)
Q Consensus 294 ~dg~i~vw~~~~~~~~~~~-~h~~~V~~l~~~~~~~~l~s~s~--D~~v~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~ 368 (563)
..+.|.+.+.+|.....+. ..-....+|++.|.+.+|+.... .+.|...++............. ..-+.++....
T Consensus 104 ~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~ 183 (619)
T 3s94_A 104 ETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQ 183 (619)
T ss_dssp TTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTT
T ss_pred CCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCC
Confidence 6789999999987654443 33344578889887666665553 3456555654332222221111 12244454455
Q ss_pred ceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCC------
Q 008496 369 VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKE------ 442 (563)
Q Consensus 369 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~------ 442 (563)
..+++-...+.|..+++..........+.......+++..+ .++++-...+.|...|..+++....+......
T Consensus 184 ~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~~~i~~~~~~p~~i~v 262 (619)
T 3s94_A 184 KLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHA 262 (619)
T ss_dssp EEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEEESSSCCCCEECCSCCCCCSEEEE
T ss_pred EEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCcccEEEecCCCCCcEEEE
Confidence 56666666677877777654332222222223346777655 55556556778888887665432222110000
Q ss_pred -------------------E--EEE---------EEccCCC-------CCCCCCCcEEEEEEeCCCeEEEEeCCCCeE--
Q 008496 443 -------------------I--YTI---------RWSPTGS-------GTNNPNQQLILASASFDSTVKLWDVELGKL-- 483 (563)
Q Consensus 443 -------------------i--~~~---------~~~p~~~-------~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-- 483 (563)
+ .|+ +..|.|. .+...... +|+.+. .+.|+..++.....
T Consensus 263 ~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~-~Ll~~~-~~~i~~i~l~~~~~~~ 340 (619)
T 3s94_A 263 FSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATE-LLLLAR-RTDLRRISLDTPDFTD 340 (619)
T ss_dssp CCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSE-EEEEEE-SSCEEEEESSSTTCCC
T ss_pred EccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCce-EEEEEc-ccceEEEecCCCccce
Confidence 0 111 1112221 11111222 333332 35677777765421
Q ss_pred -EEEecCCCCCEEEEEEcCCCCEEE-EEeCCCcEEEEecCCCeeEEEEec-CCCEEEEEEcCCCCEEEEE-ECCCeEEEE
Q 008496 484 -LYSLNGHREPVYSLAFSPTGEYLA-SGSLDKSMHIWSLKEGKIVKTYTG-NGGIFEVCWNKEGDKIAAC-FANHTVCVL 559 (563)
Q Consensus 484 -~~~~~~h~~~i~~l~~spdg~~la-sgs~dg~v~iw~~~~~~~~~~~~~-~~~i~~l~w~~~g~~la~~-~~~~~v~v~ 559 (563)
...+.+ -..+.+|+|.+.+..|. +-...+.|+.+++........... -..+..++++..+..|..+ ...+.|.|.
T Consensus 341 ~~~~~~~-l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~ 419 (619)
T 3s94_A 341 IVLQLED-IRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVT 419 (619)
T ss_dssp EECCCSC-CSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEE
T ss_pred eEEeccc-cCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEE
Confidence 111122 23467899998655554 444577899998865433333322 2356788888766655554 456777777
Q ss_pred Ee
Q 008496 560 DF 561 (563)
Q Consensus 560 ~~ 561 (563)
++
T Consensus 420 ~~ 421 (619)
T 3s94_A 420 RL 421 (619)
T ss_dssp ET
T ss_pred eC
Confidence 64
No 278
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.16 E-value=0.0022 Score=59.00 Aligned_cols=200 Identities=9% Similarity=0.152 Sum_probs=126.1
Q ss_pred eeccCCCCEEEEEeCCCCCEEEE-eeCCCcEEEEECCCCceeEEeeecc-cCeEEEecCCCceEEE-EeCCCeEEEEEcC
Q 008496 310 TLSKHKGPIFSLKWNKKGDYLLT-GSCDKTAIVWDVKTEEWKQQFEFHS-GPTLDVDWRNNVSFAT-SSTDNMIYVCKIG 386 (563)
Q Consensus 310 ~~~~h~~~V~~l~~~~~~~~l~s-~s~D~~v~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~d~~i~~~~~~ 386 (563)
.+.+-...+.+++|+|++..|++ ...++.|...|+. ++..+.+.... ...-.+.+..+..|+. .-.++.++++++.
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT 99 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence 45566678999999998776654 6678889999987 77777665432 3445566666666644 4466788888876
Q ss_pred CCcce---eeec------CCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCC---Cceeeeec-------ccCCCEEEEE
Q 008496 387 ENRPI---KTFA------GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ---DKYVHDLR-------EHSKEIYTIR 447 (563)
Q Consensus 387 ~~~~~---~~~~------~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~---~~~~~~~~-------~~~~~i~~~~ 447 (563)
....+ .... ..+.....++|+|.++.|.++.......||.++. ...+..+. .+.....+++
T Consensus 100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~ 179 (255)
T 3qqz_A 100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE 179 (255)
T ss_dssp TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence 54421 1111 1234568999999987776666655555555431 11111110 1223456788
Q ss_pred EccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEe--cC-C------CCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 008496 448 WSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSL--NG-H------REPVYSLAFSPTGEYLASGSLDKSMHIW 518 (563)
Q Consensus 448 ~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~--~~-h------~~~i~~l~~spdg~~lasgs~dg~v~iw 518 (563)
+.|... .+++.......|.++|.. |+.+..+ .. . -..-..|+|.|+|+++++ +.-+.+++|
T Consensus 180 ~dp~tg--------~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f 249 (255)
T 3qqz_A 180 FNQQKN--------TLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRF 249 (255)
T ss_dssp EETTTT--------EEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEE
T ss_pred EcCCCC--------eEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEE
Confidence 877532 356667778889999976 5554443 31 1 124588999999986555 777777776
Q ss_pred ec
Q 008496 519 SL 520 (563)
Q Consensus 519 ~~ 520 (563)
..
T Consensus 250 ~~ 251 (255)
T 3qqz_A 250 TP 251 (255)
T ss_dssp EC
T ss_pred Ee
Confidence 54
No 279
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.14 E-value=0.0069 Score=58.46 Aligned_cols=272 Identities=8% Similarity=0.020 Sum_probs=143.0
Q ss_pred CceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeCC
Q 008496 216 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD 295 (563)
Q Consensus 216 ~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~d 295 (563)
..+.++.|.+.+..++. +.++.|.. ....+..-.. ...........+..+.+++ +..++ ++..
T Consensus 36 ~~~~~v~~~~~~~~~~~-G~~g~i~~-s~DgG~tW~~-------------~~~~~~~~~~~~~~i~~~~-~~~~~-~g~~ 98 (327)
T 2xbg_A 36 ATILDMSFIDRHHGWLV-GVNATLME-TRDGGQTWEP-------------RTLVLDHSDYRFNSVSFQG-NEGWI-VGEP 98 (327)
T ss_dssp SCEEEEEESSSSCEEEE-ETTTEEEE-ESSTTSSCEE-------------CCCCCSCCCCEEEEEEEET-TEEEE-EEET
T ss_pred CcEEEEEECCCCcEEEE-cCCCeEEE-eCCCCCCCeE-------------CCCCCCCCCccEEEEEecC-CeEEE-EECC
Confidence 46889999888887774 45675532 2222221000 0000011134578888876 44444 4556
Q ss_pred CeEEEEEcCC-ceeEeec---cCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCCceE
Q 008496 296 GQARIWSTNG-DLKCTLS---KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSF 371 (563)
Q Consensus 296 g~i~vw~~~~-~~~~~~~---~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (563)
|.|.. ..++ .--..+. .+.+.+..+.+.+++..++++ .++.|..-+-....+..........+..+.+..+..+
T Consensus 99 g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~ 176 (327)
T 2xbg_A 99 PIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYRTKDSGKNWQALVQEAIGVMRNLNRSPSGEY 176 (327)
T ss_dssp TEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEEESSTTSSEEEEECSCCCCEEEEEECTTSCE
T ss_pred CeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEEEcCCCCCCEEeecCCCcceEEEEEcCCCcE
Confidence 65544 3443 3222221 234567888877766655554 4565433211223344433333345566666655556
Q ss_pred EEEeCCCeEEEEEcCCCcceee-ecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeec----ccCCCEEEE
Q 008496 372 ATSSTDNMIYVCKIGENRPIKT-FAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLR----EHSKEIYTI 446 (563)
Q Consensus 372 ~~~~~d~~i~~~~~~~~~~~~~-~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~----~~~~~i~~~ 446 (563)
+..+.++.++.-.-..+..-.. -.+....+..+.+.+++.+++ ++.+|.+++++...++.-..+. .+...++++
T Consensus 177 ~~~g~~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v 255 (327)
T 2xbg_A 177 VAVSSRGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDL 255 (327)
T ss_dssp EEEETTSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTSCEEE-EETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEE
T ss_pred EEEECCCcEEEEeCCCCCceeECCCCCCCccceeEECCCCCEEE-EeCCceEEEecCCCCCeeEeccCCcccCCcceEEE
Confidence 6666666666544221111111 123445688899999988764 4567887776422222211111 122357888
Q ss_pred EEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEec---CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 008496 447 RWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN---GHREPVYSLAFSPTGEYLASGSLDKSMHIWS 519 (563)
Q Consensus 447 ~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---~h~~~i~~l~~spdg~~lasgs~dg~v~iw~ 519 (563)
.+.|++. ++++ +.+|.| ++..+.|+.-..+. .....++++.|.+++. +++++.+|.|.-++
T Consensus 256 ~~~~~~~---------~~~~-g~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 256 AYRTPNE---------VWLA-GGAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYV 319 (327)
T ss_dssp EESSSSC---------EEEE-ESTTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEEC
T ss_pred EecCCCE---------EEEE-eCCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEc
Confidence 8877543 4444 457767 44445454333333 2235678899986655 55566788776665
No 280
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.14 E-value=0.0014 Score=66.02 Aligned_cols=233 Identities=15% Similarity=0.156 Sum_probs=135.6
Q ss_pred EEEEEeCCC--CCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCCc-eEEEEeCC---C-eEEEEEcCCCcc
Q 008496 318 IFSLKWNKK--GDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV-SFATSSTD---N-MIYVCKIGENRP 390 (563)
Q Consensus 318 V~~l~~~~~--~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d---~-~i~~~~~~~~~~ 390 (563)
...|+|+|+ +..|+.+...+.|+.+|+.++....... .......+.+..+. .+++.... . .+...+......
T Consensus 141 P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~-~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~ 219 (433)
T 4hw6_A 141 IWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTT-NIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFT 219 (433)
T ss_dssp CCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECC-CCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTC
T ss_pred CceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeec-CCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCee
Confidence 468899984 4556666555899999998776554332 22223444443322 33332211 1 122222111110
Q ss_pred -eeeecCCCcceeEEEECC-CCCEEEEEeCCCcEEEEeCCCCceeeeecc--cCCCEEEEEEccCCCCCCCCCCcEEEEE
Q 008496 391 -IKTFAGHQGEVNCVKWDP-TGSLLASCSDDVTAKIWNMKQDKYVHDLRE--HSKEIYTIRWSPTGSGTNNPNQQLILAS 466 (563)
Q Consensus 391 -~~~~~~h~~~i~~~~~~~-~~~~las~s~dg~i~iwd~~~~~~~~~~~~--~~~~i~~~~~~p~~~~~~~~~~~~~l~s 466 (563)
...+. .-.....++++| ++.++++-..++.|+.++..++.....+.. ....-..++|+|++. .+.++
T Consensus 220 ~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~--------~LYva 290 (433)
T 4hw6_A 220 ERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGD--------WAYII 290 (433)
T ss_dssp CEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSS--------EEEEE
T ss_pred cccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCC--------EEEEE
Confidence 01111 123356788999 777777777788899999876655222211 112234689988774 34555
Q ss_pred EeCCCeEEEEeCC--CCeE--EEEecCC---------------CCCEEEEEE---------cCCCCEEEEEeCCCcEEEE
Q 008496 467 ASFDSTVKLWDVE--LGKL--LYSLNGH---------------REPVYSLAF---------SPTGEYLASGSLDKSMHIW 518 (563)
Q Consensus 467 ~s~dg~i~iwd~~--~~~~--~~~~~~h---------------~~~i~~l~~---------spdg~~lasgs~dg~v~iw 518 (563)
-...+.|+.++.. ++.. ...+.+. -..-..+++ .++|.++++-...++|+.+
T Consensus 291 d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~ 370 (433)
T 4hw6_A 291 YNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVL 370 (433)
T ss_dssp ETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEE
T ss_pred eCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEE
Confidence 6667889998764 2321 1111111 122467999 7888888877778899999
Q ss_pred ecCCCeeEEEEecC-------------------CCEEEEEEc-CCCCEEEEEECCCeEEEEEee
Q 008496 519 SLKEGKIVKTYTGN-------------------GGIFEVCWN-KEGDKIAACFANHTVCVLDFR 562 (563)
Q Consensus 519 ~~~~~~~~~~~~~~-------------------~~i~~l~w~-~~g~~la~~~~~~~v~v~~~~ 562 (563)
+. +|.+. ++.+. .....|+++ ++|..+++=..+..|+.++..
T Consensus 371 ~~-~G~v~-t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 371 TP-EGRVT-TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp CT-TSEEE-EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CC-CCCEE-EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 85 56543 33321 126789999 677777676778899988764
No 281
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.11 E-value=0.0078 Score=57.76 Aligned_cols=218 Identities=13% Similarity=0.057 Sum_probs=126.7
Q ss_pred EEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecC--CCceEEEEeCCCeEEEEEcCC----CcceeeecCCCcceeE
Q 008496 330 LLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR--NNVSFATSSTDNMIYVCKIGE----NRPIKTFAGHQGEVNC 403 (563)
Q Consensus 330 l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~----~~~~~~~~~h~~~i~~ 403 (563)
|+.+. ...|+..|+.+......+. ....+..+.|. .+..|.+-...+.|+.++... ......+...-.....
T Consensus 4 ll~~~-~~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~g 81 (316)
T 1ijq_A 4 LFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG 81 (316)
T ss_dssp EEEEC-BSSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCE
T ss_pred EEEEC-CCeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCE
Confidence 44433 3568888888766544332 22334455554 455667777788999888765 2222223222245678
Q ss_pred EEECCC-CCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCC-CeEEEEeCCCC
Q 008496 404 VKWDPT-GSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD-STVKLWDVELG 481 (563)
Q Consensus 404 ~~~~~~-~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~d-g~i~iwd~~~~ 481 (563)
+++++. +++.++-...+.|.+.++........+.........++..|.+. .++.+.... +.|...++. |
T Consensus 82 lavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g--------~ly~~d~~~~~~I~~~~~d-G 152 (316)
T 1ijq_A 82 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHG--------FMYWTDWGTPAKIKKGGLN-G 152 (316)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTT--------EEEEEECSSSCEEEEEETT-S
T ss_pred EEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCC--------EEEEEccCCCCeEEEEcCC-C
Confidence 899865 45556666788999999875543322222334567888887543 233443333 678888875 3
Q ss_pred eEEEEe-cCCCCCEEEEEEcCCCCEEEEE-eCCCcEEEEecCCCeeEEEE-ec---CCCEEEEEEcCCCCEEEEEECCCe
Q 008496 482 KLLYSL-NGHREPVYSLAFSPTGEYLASG-SLDKSMHIWSLKEGKIVKTY-TG---NGGIFEVCWNKEGDKIAACFANHT 555 (563)
Q Consensus 482 ~~~~~~-~~h~~~i~~l~~spdg~~lasg-s~dg~v~iw~~~~~~~~~~~-~~---~~~i~~l~w~~~g~~la~~~~~~~ 555 (563)
.....+ ...-...+.|+++|++..|..+ +..+.|..+++.... .+.+ .. -.....++.. .+....+-..++.
T Consensus 153 ~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~-~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~ 230 (316)
T 1ijq_A 153 VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEA 230 (316)
T ss_dssp CCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTE
T ss_pred CCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCc-eEEEeecCCccCCcEEEEEE-CCEEEEEECCCCe
Confidence 333322 2223456899999987666554 456789999986432 2222 21 2346778885 3445555566777
Q ss_pred EEEEE
Q 008496 556 VCVLD 560 (563)
Q Consensus 556 v~v~~ 560 (563)
|..+|
T Consensus 231 V~~~~ 235 (316)
T 1ijq_A 231 IFSAN 235 (316)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 77776
No 282
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.04 E-value=0.0097 Score=57.99 Aligned_cols=214 Identities=10% Similarity=-0.005 Sum_probs=124.2
Q ss_pred CCcEEEEECCCCceeEEeeecccCeEEEec--CCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCC-CCE
Q 008496 336 DKTAIVWDVKTEEWKQQFEFHSGPTLDVDW--RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT-GSL 412 (563)
Q Consensus 336 D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~-~~~ 412 (563)
...|+..++........... ...+..++| ..+..+.+-...+.|+.++.........+.........+++++. +.+
T Consensus 52 ~~~I~~i~~~g~~~~~~~~~-~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~l 130 (349)
T 3v64_C 52 RIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKL 130 (349)
T ss_dssp BSCEEEECTTSCCEEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEE
T ss_pred ccceEEEeCCCCeeEEeecC-CCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeE
Confidence 34577777765544332221 223445555 44556666667788888888765443333333345678899875 455
Q ss_pred EEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCC-CeEEEEeCCCCeEEEEe-cCC
Q 008496 413 LASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD-STVKLWDVELGKLLYSL-NGH 490 (563)
Q Consensus 413 las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~d-g~i~iwd~~~~~~~~~~-~~h 490 (563)
+++-...+.|.+.++........+.........+++.|.+. .+..+-... +.|...++... ....+ ...
T Consensus 131 y~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g--------~ly~td~~~~~~I~r~~~dG~-~~~~~~~~~ 201 (349)
T 3v64_C 131 YWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEG--------TIYWTDWGNTPRIEASSMDGS-GRRIIADTH 201 (349)
T ss_dssp EEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTT--------EEEEEECSSSCEEEEEETTSC-SCEESCCSS
T ss_pred EEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcC--------eEEEeccCCCCEEEEEeCCCC-CcEEEEECC
Confidence 56666678899999876543332333334567888887542 244454445 77888887632 22222 222
Q ss_pred CCCEEEEEEcCCCCEEEEE-eCCCcEEEEecCCCeeEEEEe-cCCCEEEEEEcCCCCEEEEEECCCeEEEEE
Q 008496 491 REPVYSLAFSPTGEYLASG-SLDKSMHIWSLKEGKIVKTYT-GNGGIFEVCWNKEGDKIAACFANHTVCVLD 560 (563)
Q Consensus 491 ~~~i~~l~~spdg~~lasg-s~dg~v~iw~~~~~~~~~~~~-~~~~i~~l~w~~~g~~la~~~~~~~v~v~~ 560 (563)
-...+.|+|+|++..|..+ +..+.|..+++.......... .-.....++. ..+....+-..++.|..+|
T Consensus 202 ~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~ 272 (349)
T 3v64_C 202 LFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSAN 272 (349)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEE
T ss_pred CCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEE-ECCEEEEecCCCCeEEEEE
Confidence 2346899999877665544 456789999986433222222 2234677777 3444444445566676665
No 283
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.01 E-value=0.0045 Score=61.36 Aligned_cols=221 Identities=10% Similarity=0.002 Sum_probs=128.5
Q ss_pred EEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEec--CCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEE
Q 008496 329 YLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW--RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKW 406 (563)
Q Consensus 329 ~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~ 406 (563)
+|+.+. ...|+..++........... ...+..+.| ..+..|.+-...+.|+.++.........+.........+++
T Consensus 89 ~l~~~~-~~~I~~i~~~~~~~~~~~~~-~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glav 166 (386)
T 3v65_B 89 VLLFAN-RIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAV 166 (386)
T ss_dssp EEEEEC-BSCEEEECTTSCCCEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEE
T ss_pred eeEeec-CccceeeccCCCcEEEEecC-CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEE
Confidence 444333 35678888776554433322 223445555 44556667677788988888765443333333334567888
Q ss_pred CCC-CCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCC-CeEEEEeCCCCeEE
Q 008496 407 DPT-GSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD-STVKLWDVELGKLL 484 (563)
Q Consensus 407 ~~~-~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~d-g~i~iwd~~~~~~~ 484 (563)
++. +.++++-...+.|.+.++........+.........+++.|.+. .+..+-... +.|..+++......
T Consensus 167 d~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g--------~ly~td~~~~~~I~r~~~dG~~~~ 238 (386)
T 3v65_B 167 DWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEG--------TIYWTDWGNTPRIEASSMDGSGRR 238 (386)
T ss_dssp ETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTT--------EEEEEECSSSCEEEEEETTSCSCE
T ss_pred EeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCC--------eEEEeccCCCCEEEEEeCCCCCcE
Confidence 875 45556666677888888775543332333334567888887543 244444444 77888887643222
Q ss_pred EEecCCCCCEEEEEEcCCCCEEEEE-eCCCcEEEEecCCCeeEEEEe-cCCCEEEEEEcCCCCEEEEEECCCeEEEEE
Q 008496 485 YSLNGHREPVYSLAFSPTGEYLASG-SLDKSMHIWSLKEGKIVKTYT-GNGGIFEVCWNKEGDKIAACFANHTVCVLD 560 (563)
Q Consensus 485 ~~~~~h~~~i~~l~~spdg~~lasg-s~dg~v~iw~~~~~~~~~~~~-~~~~i~~l~w~~~g~~la~~~~~~~v~v~~ 560 (563)
......-...+.|+|+|++..|..+ +..+.|..+++.......... .......|+. ..+..+.+-..++.|..+|
T Consensus 239 ~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~ 315 (386)
T 3v65_B 239 IIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSAN 315 (386)
T ss_dssp EEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEE
T ss_pred EEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEEEE
Confidence 2222223346899999876665544 456789999986433322222 2334677777 3444445555667777665
No 284
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.01 E-value=0.006 Score=61.41 Aligned_cols=233 Identities=10% Similarity=0.037 Sum_probs=125.3
Q ss_pred CeEEEEECCC--CCEEEEEeCCCeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCC----Cc-EEEEECCCCc
Q 008496 276 DVTTLDWNGE--GTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCD----KT-AIVWDVKTEE 348 (563)
Q Consensus 276 ~V~~l~~s~~--g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D----~~-v~iwd~~~~~ 348 (563)
....|+|+|+ +..|..+...+.|+.++..+.....+........+++|+++|+ |+.+... .. +...+.. +.
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~-~~ 217 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRA-SG 217 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGG-GT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECC-CC
Confidence 4568999984 3344444444899999985544444544455678999999999 5444432 22 3333322 21
Q ss_pred ee--EEeee-cccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeee-c-CCCcceeEEEECCCCC-EEEEEeCCCcE
Q 008496 349 WK--QQFEF-HSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTF-A-GHQGEVNCVKWDPTGS-LLASCSDDVTA 422 (563)
Q Consensus 349 ~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~-~-~h~~~i~~~~~~~~~~-~las~s~dg~i 422 (563)
+. ..+.. ....-+.++......+++...++.|+.++.........+ . +....-..++|+|+++ ++++-...+.|
T Consensus 218 ~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I 297 (433)
T 4hw6_A 218 FTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCI 297 (433)
T ss_dssp TCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEE
T ss_pred eeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEE
Confidence 11 11111 111112233323445555556677888877644431222 1 1122234699999998 55566667889
Q ss_pred EEEeCCC--Cce--eeeeccc---------------CCCEEEEEE---------ccCCCCCCCCCCcEEEEEEeCCCeEE
Q 008496 423 KIWNMKQ--DKY--VHDLREH---------------SKEIYTIRW---------SPTGSGTNNPNQQLILASASFDSTVK 474 (563)
Q Consensus 423 ~iwd~~~--~~~--~~~~~~~---------------~~~i~~~~~---------~p~~~~~~~~~~~~~l~s~s~dg~i~ 474 (563)
+.++... +.. ...+.+. -..-..+++ .+.+ .+.++-...+.|+
T Consensus 298 ~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g---------~lyvaD~~n~~I~ 368 (433)
T 4hw6_A 298 YRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEY---------DFYFCDRDSHTVR 368 (433)
T ss_dssp EEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCE---------EEEEEETTTTEEE
T ss_pred EEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCC---------cEEEEECCCCEEE
Confidence 9987652 221 0111111 012344666 3322 2445556677888
Q ss_pred EEeCCCCeEEEEecCC------------------CCCEEEEEEc-CCCCEEEEEeCCCcEEEEecC
Q 008496 475 LWDVELGKLLYSLNGH------------------REPVYSLAFS-PTGEYLASGSLDKSMHIWSLK 521 (563)
Q Consensus 475 iwd~~~~~~~~~~~~h------------------~~~i~~l~~s-pdg~~lasgs~dg~v~iw~~~ 521 (563)
.++. .|... ++.+. -..-..|+++ ++|.++++=...++|+.++++
T Consensus 369 ~~~~-~G~v~-t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 369 VLTP-EGRVT-TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp EECT-TSEEE-EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EECC-CCCEE-EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 8885 45443 33221 0125678888 566666655566677777653
No 285
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.97 E-value=0.0074 Score=65.34 Aligned_cols=226 Identities=12% Similarity=0.074 Sum_probs=135.9
Q ss_pred CCeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEE-EeeCCCcEEEEECCCC----ceeEEee--ecccCeEEEecCC
Q 008496 295 DGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLL-TGSCDKTAIVWDVKTE----EWKQQFE--FHSGPTLDVDWRN 367 (563)
Q Consensus 295 dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~s~D~~v~iwd~~~~----~~~~~~~--~~~~~~~~~~~~~ 367 (563)
...|+..++.+.....+......+.+|+|++.+..|+ +-...+.|+.+++... .....+. .....-+.++|..
T Consensus 403 ~~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~ 482 (791)
T 3m0c_C 403 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH 482 (791)
T ss_dssp BSSEEEECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTT
T ss_pred ccceeEeeccCCcceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecC
Confidence 3567777776554444444456678999998666555 4445678888888653 1222222 1233457889998
Q ss_pred CceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEe-C-CCcEEEEeCCCCceeeeecccCCCEEE
Q 008496 368 NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS-D-DVTAKIWNMKQDKYVHDLREHSKEIYT 445 (563)
Q Consensus 368 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s-~-dg~i~iwd~~~~~~~~~~~~~~~~i~~ 445 (563)
...+++-...+.|.+.++........+...-.....|+++|.+..|.... . .+.|...++........+...-.....
T Consensus 483 ~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~G 562 (791)
T 3m0c_C 483 SNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNG 562 (791)
T ss_dssp TEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEE
T ss_pred CcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceE
Confidence 88888888889999999876544333333445678999999755554443 2 367888888755443333333345677
Q ss_pred EEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecC--CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 008496 446 IRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG--HREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEG 523 (563)
Q Consensus 446 ~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~ 523 (563)
|++.+... .+..+-...+.|...++........+.. ......+|++..+ .++++-...+.|...+..+|
T Consensus 563 LavD~~~~--------~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~-~lYwtD~~~~~I~~~dk~tG 633 (791)
T 3m0c_C 563 ITLDLLSG--------RLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTG 633 (791)
T ss_dssp EEEETTTT--------EEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETT-EEEEEETTTTEEEEEETTTC
T ss_pred EEEecCCC--------eEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeCC-EEEEEECCCCEEEEEeCCCC
Confidence 88876542 2444445567888888864332222222 1223456666433 34444455678888887777
Q ss_pred eeEEEE
Q 008496 524 KIVKTY 529 (563)
Q Consensus 524 ~~~~~~ 529 (563)
+.+..+
T Consensus 634 ~~~~~l 639 (791)
T 3m0c_C 634 SDVNLL 639 (791)
T ss_dssp CCCEEE
T ss_pred cceEEe
Confidence 544443
No 286
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.93 E-value=0.018 Score=57.24 Aligned_cols=221 Identities=10% Similarity=0.019 Sum_probs=126.7
Q ss_pred EEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEec--CCCceEEEEeCCCeEEEEEcCCC----cceeeecCCCccee
Q 008496 329 YLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW--RNNVSFATSSTDNMIYVCKIGEN----RPIKTFAGHQGEVN 402 (563)
Q Consensus 329 ~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~d~~i~~~~~~~~----~~~~~~~~h~~~i~ 402 (563)
+|+.+ ....|+..++.......... ....+..++| ..+..|.+-...+.|+.+++... .....+........
T Consensus 85 ~ll~~-~~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 162 (400)
T 3p5b_L 85 YLFFT-NRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 162 (400)
T ss_dssp EEEEE-ETTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEE
T ss_pred eeEEe-ccceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcc
Confidence 44433 34678888887665444332 2233445555 45566677677788888887642 22233332344577
Q ss_pred EEEECC-CCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEE-eCCCeEEEEeCCC
Q 008496 403 CVKWDP-TGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASA-SFDSTVKLWDVEL 480 (563)
Q Consensus 403 ~~~~~~-~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~-s~dg~i~iwd~~~ 480 (563)
.+++++ .+++.++-...+.|.+.++........+.........|+..|.+. .+..+- +..+.|...++..
T Consensus 163 glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g--------~ly~td~~~~~~I~~~~~dG 234 (400)
T 3p5b_L 163 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHG--------FMYWTDWGTPAKIKKGGLNG 234 (400)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTT--------EEEEEECSSSCCEEEEETTS
T ss_pred cEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccC--------eEEEEeCCCCCEEEEEeCCC
Confidence 899987 455666666788999999876654333333334467888887542 233333 2246788888764
Q ss_pred CeEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEecCCCeeEEEEec---CCCEEEEEEcCCCCEEEEEECCCeE
Q 008496 481 GKLLYSLNGHREPVYSLAFSPTGEYLASGS-LDKSMHIWSLKEGKIVKTYTG---NGGIFEVCWNKEGDKIAACFANHTV 556 (563)
Q Consensus 481 ~~~~~~~~~h~~~i~~l~~spdg~~lasgs-~dg~v~iw~~~~~~~~~~~~~---~~~i~~l~w~~~g~~la~~~~~~~v 556 (563)
......+...-...+.|+++|++..|..+. ..+.|..+++........... -...+.|+.. .+..+.+-..++.|
T Consensus 235 ~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V 313 (400)
T 3p5b_L 235 VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAI 313 (400)
T ss_dssp CSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSE
T ss_pred CccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeE
Confidence 332222222234568999999877766554 467899999865433222222 1335666663 23344444556666
Q ss_pred EEEE
Q 008496 557 CVLD 560 (563)
Q Consensus 557 ~v~~ 560 (563)
..+|
T Consensus 314 ~~~~ 317 (400)
T 3p5b_L 314 FSAN 317 (400)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6665
No 287
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.91 E-value=0.013 Score=59.26 Aligned_cols=240 Identities=13% Similarity=0.163 Sum_probs=139.1
Q ss_pred CeEEEEECCC--CCEEEEEeCCCeEEEEEcCCceeEeeccC----CCCEEEEEe-------CCCCCEEEEeeCCC-c---
Q 008496 276 DVTTLDWNGE--GTLLATGSYDGQARIWSTNGDLKCTLSKH----KGPIFSLKW-------NKKGDYLLTGSCDK-T--- 338 (563)
Q Consensus 276 ~V~~l~~s~~--g~~l~sg~~dg~i~vw~~~~~~~~~~~~h----~~~V~~l~~-------~~~~~~l~s~s~D~-~--- 338 (563)
....|+|+|. ++++++-...+.|++.|..+..+..+..- ......|+| +++|.+|+.+...+ .
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 4678999983 45555544457788899877655554322 224789999 99999777666543 2
Q ss_pred ---EEEEECCC-CceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECC-CCCEE
Q 008496 339 ---AIVWDVKT-EEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP-TGSLL 413 (563)
Q Consensus 339 ---v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~-~~~~l 413 (563)
|.+.+... +.+.. .. ++ ..+..+. ....++.+| ++.++
T Consensus 220 ~~~V~~i~r~~~G~~~~--------------~~---------~~----------~~v~~~~----~p~giavdp~~g~LY 262 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDD--------------RS---------DI----------QLIAAYK----QCNGATIHPINGELY 262 (496)
T ss_dssp EEEEEEEECCTTSCCST--------------TS---------CE----------EEEEEES----CCCCEEECTTTCCEE
T ss_pred CceEEEEecCCCCceee--------------cc---------cc----------eeeccCC----CceEEEEcCCCCeEE
Confidence 33333211 11100 00 00 0011111 234678899 45666
Q ss_pred EEEeCCCcEEEEeCC-------CCce-----------eeee-c-ccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeE
Q 008496 414 ASCSDDVTAKIWNMK-------QDKY-----------VHDL-R-EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTV 473 (563)
Q Consensus 414 as~s~dg~i~iwd~~-------~~~~-----------~~~~-~-~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i 473 (563)
++-..++.|..+|+. ++.. ...+ . .....-+.++|+|++. .+.++-+....|
T Consensus 263 vtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~--------~lYvaD~~~h~I 334 (496)
T 3kya_A 263 FNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGK--------YAYFGVINNHYF 334 (496)
T ss_dssp EEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSS--------EEEEEETTTTEE
T ss_pred EEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCC--------EEEEEeCCCCEE
Confidence 677778889999986 4432 1111 1 1223457899999874 244555667888
Q ss_pred EEEeC--CCCeE--EEEecC------CC---------CCEE-EEEEc-------CCCCEEEEEeCCCcEEEEecCCCeeE
Q 008496 474 KLWDV--ELGKL--LYSLNG------HR---------EPVY-SLAFS-------PTGEYLASGSLDKSMHIWSLKEGKIV 526 (563)
Q Consensus 474 ~iwd~--~~~~~--~~~~~~------h~---------~~i~-~l~~s-------pdg~~lasgs~dg~v~iw~~~~~~~~ 526 (563)
+.++. ..+.. ...+.+ .. ..-. .++.. ++|.++++=....+|+.++ .+|. +
T Consensus 335 ~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v 412 (496)
T 3kya_A 335 MRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-V 412 (496)
T ss_dssp EEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-E
T ss_pred EEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-E
Confidence 88654 33332 012211 10 1123 44554 5677777767778999998 4664 4
Q ss_pred EEEecC----------------C---------CEEEEEEcCC-CCEEEEEECCCeEEEEEee
Q 008496 527 KTYTGN----------------G---------GIFEVCWNKE-GDKIAACFANHTVCVLDFR 562 (563)
Q Consensus 527 ~~~~~~----------------~---------~i~~l~w~~~-g~~la~~~~~~~v~v~~~~ 562 (563)
.++.+. + ....|+++++ |...++=..|..|+.+++.
T Consensus 413 ~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~ 474 (496)
T 3kya_A 413 STYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISME 474 (496)
T ss_dssp EEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred EEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECC
Confidence 444332 1 2568999997 7666666778899988764
No 288
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.87 E-value=0.0086 Score=57.36 Aligned_cols=193 Identities=17% Similarity=0.255 Sum_probs=121.0
Q ss_pred CCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCCc---------eEEEEeC--CCeEEEEEcC-CCccee
Q 008496 325 KKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV---------SFATSST--DNMIYVCKIG-ENRPIK 392 (563)
Q Consensus 325 ~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~--d~~i~~~~~~-~~~~~~ 392 (563)
|....++.....+-+.+||+ .++.++.+.. +.+..++.+.+. .+++.-. +++|.++++. ...++.
T Consensus 38 p~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~ 114 (355)
T 3amr_A 38 PQNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQ 114 (355)
T ss_dssp GGGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEE
T ss_pred CCccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCcee
Confidence 34456777777889999999 7777766543 334444433322 2455555 6899999885 223344
Q ss_pred eecC------CC-cceeEEEE--CCC-CC-EEEEEeCCCcEEEEeCC-------CCceeeeecccCCCEEEEEEccCCCC
Q 008496 393 TFAG------HQ-GEVNCVKW--DPT-GS-LLASCSDDVTAKIWNMK-------QDKYVHDLREHSKEIYTIRWSPTGSG 454 (563)
Q Consensus 393 ~~~~------h~-~~i~~~~~--~~~-~~-~las~s~dg~i~iwd~~-------~~~~~~~~~~~~~~i~~~~~~p~~~~ 454 (563)
.+.. .. ..+..+++ +|. ++ +++....+|.+..|++. +.+.+++|... +.+-.+...+...
T Consensus 115 ~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg-sq~EgcvvDd~~g- 192 (355)
T 3amr_A 115 SMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN-SQTEGMAADDEYG- 192 (355)
T ss_dssp ECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS-SCEEEEEEETTTT-
T ss_pred eccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC-CCcceEEEcCCCC-
Confidence 4421 11 44556777 774 44 57777888999999873 23445665543 3455666655432
Q ss_pred CCCCCCcEEEEEEeCCCeEEEEeCC-----CCeEEEEec-CC-CCCEEEEEE--cCCCC-EEEEEe-CCCcEEEEecC-C
Q 008496 455 TNNPNQQLILASASFDSTVKLWDVE-----LGKLLYSLN-GH-REPVYSLAF--SPTGE-YLASGS-LDKSMHIWSLK-E 522 (563)
Q Consensus 455 ~~~~~~~~~l~s~s~dg~i~iwd~~-----~~~~~~~~~-~h-~~~i~~l~~--spdg~-~lasgs-~dg~v~iw~~~-~ 522 (563)
.|..+-.|.-|..++.+ +++.+..+. ++ ...+..|++ .++|+ ||++.+ .+.+..+|+.. +
T Consensus 193 --------~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~ 264 (355)
T 3amr_A 193 --------RLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGK 264 (355)
T ss_dssp --------EEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTT
T ss_pred --------eEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCC
Confidence 56778888666666754 355665552 22 235788877 56666 565555 67799999996 7
Q ss_pred CeeEEEEe
Q 008496 523 GKIVKTYT 530 (563)
Q Consensus 523 ~~~~~~~~ 530 (563)
.+.+..|.
T Consensus 265 ~~~vg~f~ 272 (355)
T 3amr_A 265 NKYVADFR 272 (355)
T ss_dssp CCEEEEEE
T ss_pred CcEEEEEE
Confidence 78888884
No 289
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.87 E-value=0.0075 Score=58.86 Aligned_cols=68 Identities=15% Similarity=0.243 Sum_probs=43.0
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEEcCCceeEe--e---ccCCCCEEEEEeCCC---CCEEEEeeCC------CcEEE
Q 008496 276 DVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCT--L---SKHKGPIFSLKWNKK---GDYLLTGSCD------KTAIV 341 (563)
Q Consensus 276 ~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~--~---~~h~~~V~~l~~~~~---~~~l~s~s~D------~~v~i 341 (563)
.-..++|.|+|+++++ ..+|.|++++ ++..... + .........|+|+|+ +.+|+.+... +.|..
T Consensus 32 ~P~~ia~~pdG~l~V~-e~~g~I~~i~-~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r 109 (352)
T 2ism_A 32 VPWALAFLPDGGMLIA-ERPGRIRLFR-EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVR 109 (352)
T ss_dssp CEEEEEECTTSCEEEE-ETTTEEEEEE-TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEE
T ss_pred CceEEEEcCCCeEEEE-eCCCeEEEEE-CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEE
Confidence 3578999999996555 5669999998 5543211 1 112345789999998 5555554432 44555
Q ss_pred EECC
Q 008496 342 WDVK 345 (563)
Q Consensus 342 wd~~ 345 (563)
|+..
T Consensus 110 ~~~~ 113 (352)
T 2ism_A 110 LRHL 113 (352)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 5544
No 290
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.75 E-value=0.00026 Score=76.11 Aligned_cols=227 Identities=11% Similarity=0.071 Sum_probs=130.0
Q ss_pred CCeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEee-CCCcEEEEECCC----CceeEEee--ecccCeEEEecCC
Q 008496 295 DGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGS-CDKTAIVWDVKT----EEWKQQFE--FHSGPTLDVDWRN 367 (563)
Q Consensus 295 dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s-~D~~v~iwd~~~----~~~~~~~~--~~~~~~~~~~~~~ 367 (563)
.+.|+..+..+.....+......+.+|+|++.+..|+.+. ..+.|..+++.+ ......+. ......+.++|..
T Consensus 385 ~~~I~~id~~~~~~~~~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~ 464 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH 464 (699)
T ss_dssp TTC-CEECTTSCCEECCSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSS
T ss_pred ccceEEEeCCCCcceeeeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeC
Confidence 3567777776654433333334557889998777776654 457899998875 22111111 1122345677777
Q ss_pred CceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEe-CC-CcEEEEeCCCCceeeeecccCCCEEE
Q 008496 368 NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS-DD-VTAKIWNMKQDKYVHDLREHSKEIYT 445 (563)
Q Consensus 368 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s-~d-g~i~iwd~~~~~~~~~~~~~~~~i~~ 445 (563)
...+++-...+.|.+++.........+.........|+++|.+..|+... .. +.|..+++........+...-..-..
T Consensus 465 g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnG 544 (699)
T 1n7d_A 465 SNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNG 544 (699)
T ss_dssp SBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCC
T ss_pred CcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccE
Confidence 77777777778898888765543333332234567889998655444333 22 67777776543221111111223456
Q ss_pred EEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEec--CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 008496 446 IRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN--GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEG 523 (563)
Q Consensus 446 ~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~ 523 (563)
|+|+|.+. .+.++-+..+.|..+++........+. ........|++..+ .++++....+.|..++..+|
T Consensus 545 lavd~~~~--------~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G 615 (699)
T 1n7d_A 545 ITLDLLSG--------RLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTG 615 (699)
T ss_dssp EEECTTTC--------CEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTE
T ss_pred EEEeccCC--------EEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCC
Confidence 78887643 244555677889999986432222221 11122345566544 44455556788999998888
Q ss_pred eeEEEEe
Q 008496 524 KIVKTYT 530 (563)
Q Consensus 524 ~~~~~~~ 530 (563)
+.+..+.
T Consensus 616 ~~~~~i~ 622 (699)
T 1n7d_A 616 SDVNLLA 622 (699)
T ss_dssp EEEECCC
T ss_pred CceEEee
Confidence 8776654
No 291
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.74 E-value=0.0072 Score=57.90 Aligned_cols=181 Identities=14% Similarity=0.251 Sum_probs=118.1
Q ss_pred eEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCC----CC---E-EEEEeC--CCcEEEEeCC--CCceeeeec
Q 008496 370 SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT----GS---L-LASCSD--DVTAKIWNMK--QDKYVHDLR 437 (563)
Q Consensus 370 ~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~----~~---~-las~s~--dg~i~iwd~~--~~~~~~~~~ 437 (563)
.++.....+.+++|++ .++.++.+.. +.++.+..-|. |+ + +++... +++|.+|++. ++ .+..+.
T Consensus 42 ~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~-~l~~i~ 117 (355)
T 3amr_A 42 KLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG-TLQSMT 117 (355)
T ss_dssp EEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTC-CEEECS
T ss_pred EEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCC-ceeecc
Confidence 3555566778999999 6777777653 56777776653 22 2 344444 6899999763 33 244432
Q ss_pred c------cC-CCEEEEEE--ccCCCCCCCCCCcEEEEEEeCCCeEEEEeCC-------CCeEEEEecCCCCCEEEEEEcC
Q 008496 438 E------HS-KEIYTIRW--SPTGSGTNNPNQQLILASASFDSTVKLWDVE-------LGKLLYSLNGHREPVYSLAFSP 501 (563)
Q Consensus 438 ~------~~-~~i~~~~~--~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~-------~~~~~~~~~~h~~~i~~l~~sp 501 (563)
. .. ..++.++. +|.. +..++.....+|.+..|++. ..+.+.++.- ...+..++..+
T Consensus 118 ~~~~pv~t~~~~pyGlcly~~~~~-------g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd 189 (355)
T 3amr_A 118 DPDHPIATAINEVYGFTLYHSQKT-------GKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADD 189 (355)
T ss_dssp CTTSCEECCCSSCCCEEEEECTTT-------CCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEET
T ss_pred ccccCcCCCCCCeeEEEEEecCCC-------CcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcC
Confidence 1 11 45566666 4532 23467778888999999872 3355666653 35688899999
Q ss_pred CCCEEEEEeCCCcEEEEecC-----CCeeEEEEecC---CCEEEEEE--cCCCC-EEEEEE-CCCeEEEEEee
Q 008496 502 TGEYLASGSLDKSMHIWSLK-----EGKIVKTYTGN---GGIFEVCW--NKEGD-KIAACF-ANHTVCVLDFR 562 (563)
Q Consensus 502 dg~~lasgs~dg~v~iw~~~-----~~~~~~~~~~~---~~i~~l~w--~~~g~-~la~~~-~~~~v~v~~~~ 562 (563)
....|..+-.+.-|..++.+ +++++..+... ..+-.|+. .++|+ +|.+++ .+.+..|||.+
T Consensus 190 ~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 190 EYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp TTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred CCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 88999999998777777754 35566655332 35677776 56776 555554 57789999863
No 292
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.74 E-value=0.0023 Score=60.72 Aligned_cols=157 Identities=14% Similarity=0.146 Sum_probs=105.6
Q ss_pred CCCcceeEEEECCCCCEEEEEe-CCCcEEEEeCCCCceeee-ecc----c--CCCEEEEEE---ccCCCCCCCCCCcEEE
Q 008496 396 GHQGEVNCVKWDPTGSLLASCS-DDVTAKIWNMKQDKYVHD-LRE----H--SKEIYTIRW---SPTGSGTNNPNQQLIL 464 (563)
Q Consensus 396 ~h~~~i~~~~~~~~~~~las~s-~dg~i~iwd~~~~~~~~~-~~~----~--~~~i~~~~~---~p~~~~~~~~~~~~~l 464 (563)
+......+++|++....|..++ ..++|..|+...+..... +.. . ...+..+.| .|.+. ++
T Consensus 10 ~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~gr---------L~ 80 (334)
T 2p9w_A 10 VKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKR---------LF 80 (334)
T ss_dssp CTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCE---------EE
T ss_pred CcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCc---------EE
Confidence 3344456899988655555555 799999999875543322 221 1 113578888 56643 44
Q ss_pred EEEe-------------CCCeEEEEeCC---CCeEEEEec--CC-----------CCCEEEEEEcCCCCEEEEEeCC-Cc
Q 008496 465 ASAS-------------FDSTVKLWDVE---LGKLLYSLN--GH-----------REPVYSLAFSPTGEYLASGSLD-KS 514 (563)
Q Consensus 465 ~s~s-------------~dg~i~iwd~~---~~~~~~~~~--~h-----------~~~i~~l~~spdg~~lasgs~d-g~ 514 (563)
++.. .+..|..+|+. +++.++... .. ......++..++|+..++++.- +.
T Consensus 81 vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~ 160 (334)
T 2p9w_A 81 AVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPA 160 (334)
T ss_dssp EEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCE
T ss_pred EEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCe
Confidence 4333 26789999998 777765543 11 1247899999999999999988 88
Q ss_pred EEEEecCCCeeEEEEe-c------CCCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496 515 MHIWSLKEGKIVKTYT-G------NGGIFEVCWNKEGDKIAACFANHTVCVLDFR 562 (563)
Q Consensus 515 v~iw~~~~~~~~~~~~-~------~~~i~~l~w~~~g~~la~~~~~~~v~v~~~~ 562 (563)
|...+.. |+.+..+. . ..+.+.++++|+|+.|++....+.+..+|++
T Consensus 161 I~rV~pd-G~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 161 IARVSAD-GKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVS 214 (334)
T ss_dssp EEEECTT-SCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECS
T ss_pred EEEEeCC-CCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence 7777764 33333331 1 1235689999999999999779999988854
No 293
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.71 E-value=0.036 Score=53.06 Aligned_cols=215 Identities=8% Similarity=-0.003 Sum_probs=120.0
Q ss_pred CCcEEEEECCCCc--eeEEeeecccCeEEEecC--CCceEEEEeCCCeEEEEEcCCCcc-eeeecCCCcceeEEEECCC-
Q 008496 336 DKTAIVWDVKTEE--WKQQFEFHSGPTLDVDWR--NNVSFATSSTDNMIYVCKIGENRP-IKTFAGHQGEVNCVKWDPT- 409 (563)
Q Consensus 336 D~~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~~~~-~~~~~~h~~~i~~~~~~~~- 409 (563)
...|+..|+.... ....+. .......++|. .+..|.+-...+.|+.++...... ...+...-.....+++++.
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~ 90 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG 90 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTT
T ss_pred cCeEEEEECCCCceEEEEEec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCC
Confidence 4678888887653 111111 11234455554 456667777778888888765432 1122222234667888874
Q ss_pred CCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEE-eCCCeEEEEeCCCCeEEEEec
Q 008496 410 GSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASA-SFDSTVKLWDVELGKLLYSLN 488 (563)
Q Consensus 410 ~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~ 488 (563)
+.++++-...+.|.++++........+.........+++.|.+. .+..+- +..+.|...++.-......+.
T Consensus 91 g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g--------~ly~td~~~~~~I~r~~~dG~~~~~~~~ 162 (318)
T 3sov_A 91 EKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSG--------FMYWTDWGEVPKIERAGMDGSSRFIIIN 162 (318)
T ss_dssp TEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGT--------EEEEEECSSSCEEEEEETTSCSCEEEEC
T ss_pred CeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCC--------EEEEEecCCCCEEEEEEcCCCCeEEEEE
Confidence 55556666778999999876543222223334567888887532 233333 235778888776322211122
Q ss_pred CCCCCEEEEEEcCCCCEEEEE-eCCCcEEEEecCCCeeEEEEe-cCCCEEEEEEcCCCCEEEEEECCCeEEEEE
Q 008496 489 GHREPVYSLAFSPTGEYLASG-SLDKSMHIWSLKEGKIVKTYT-GNGGIFEVCWNKEGDKIAACFANHTVCVLD 560 (563)
Q Consensus 489 ~h~~~i~~l~~spdg~~lasg-s~dg~v~iw~~~~~~~~~~~~-~~~~i~~l~w~~~g~~la~~~~~~~v~v~~ 560 (563)
..-..-+.|+|+|++..|..+ +..+.|..+++.......... .......++...+ ..+.+-..++.|..+|
T Consensus 163 ~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~~-~lywtd~~~~~V~~~~ 235 (318)
T 3sov_A 163 SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACN 235 (318)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEETT-EEEEEETTTTEEEEEE
T ss_pred CCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeCC-EEEEEecCCCeEEEEE
Confidence 222345899999976666544 456789999986433222222 2234567776532 3333444556666665
No 294
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.59 E-value=0.11 Score=54.92 Aligned_cols=221 Identities=10% Similarity=0.004 Sum_probs=136.3
Q ss_pred CCCeEEEEEcCCcee-Eeec-cCCCCEEEEEeCCCCCEEEEe-eCCCcEEEEECCCCceeEEeee--cccCeEEEecCCC
Q 008496 294 YDGQARIWSTNGDLK-CTLS-KHKGPIFSLKWNKKGDYLLTG-SCDKTAIVWDVKTEEWKQQFEF--HSGPTLDVDWRNN 368 (563)
Q Consensus 294 ~dg~i~vw~~~~~~~-~~~~-~h~~~V~~l~~~~~~~~l~s~-s~D~~v~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~ 368 (563)
....|+..++++... ..+. ..-..+.+|+|++.+..|+.+ ..++.|..+++........+.. ....-+.++|...
T Consensus 13 ~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~ 92 (628)
T 4a0p_A 13 RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGK 92 (628)
T ss_dssp ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTT
T ss_pred eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCC
Confidence 456788888775432 2221 123467899999977666544 4578899998876544333322 2234578899888
Q ss_pred ceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEe--CCCcEEEEeCCCCceeeeecccCCCEEEE
Q 008496 369 VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS--DDVTAKIWNMKQDKYVHDLREHSKEIYTI 446 (563)
Q Consensus 369 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s--~dg~i~iwd~~~~~~~~~~~~~~~~i~~~ 446 (563)
..+++-...+.|.+.++........+...-.....|+++|....|.... ..+.|...++....... +...-.....|
T Consensus 93 ~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~-l~~~~~~P~Gl 171 (628)
T 4a0p_A 93 NLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTT-LVPNVGRANGL 171 (628)
T ss_dssp EEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE-EECSCSSEEEE
T ss_pred EEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEE-EECCCCCcceE
Confidence 8888888889999999876543333333344578999998655544443 25677777776544322 22233456788
Q ss_pred EEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCee
Q 008496 447 RWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKI 525 (563)
Q Consensus 447 ~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~ 525 (563)
++.+.+. .+..+-...+.|...|+..... ..+.........|++.. +..+.+-...+.|...|..+|+.
T Consensus 172 alD~~~~--------~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~ 240 (628)
T 4a0p_A 172 TIDYAKR--------RLYWTDLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQN 240 (628)
T ss_dssp EEETTTT--------EEEEEETTTTEEEEEETTSCSC-EEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCS
T ss_pred EEccccC--------EEEEEECCCCEEEEEcCCCCce-EEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCCc
Confidence 8887543 2445556678899998864332 22222223346777765 44445545578899888777653
No 295
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.57 E-value=0.046 Score=50.19 Aligned_cols=196 Identities=12% Similarity=0.162 Sum_probs=117.1
Q ss_pred ecCCCCceEEEEECCCCCEEE-EeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEE
Q 008496 211 LEGHTSEVCACAWSPAGSLLA-SGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLL 289 (563)
Q Consensus 211 l~~h~~~V~~~~~sp~~~~la-tgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l 289 (563)
+.|-...+..++|+|++..|+ ....++.|...|.. +.. ++...- ....+.-.+++.+++.++
T Consensus 22 l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v-------------~~~i~l---~g~~D~EGIa~~~~g~~~ 84 (255)
T 3qqz_A 22 IAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDL-------------IRTIPL---DFVKDLETIEYIGDNQFV 84 (255)
T ss_dssp CTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCE-------------EEEEEC---SSCSSEEEEEECSTTEEE
T ss_pred CCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCE-------------EEEEec---CCCCChHHeEEeCCCEEE
Confidence 445556799999999866555 45567777777764 321 111110 112567788899998877
Q ss_pred EEEeCCCeEEEEEcCCce----eEee--c----cCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECC---CCceeEEee--
Q 008496 290 ATGSYDGQARIWSTNGDL----KCTL--S----KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVK---TEEWKQQFE-- 354 (563)
Q Consensus 290 ~sg~~dg~i~vw~~~~~~----~~~~--~----~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~---~~~~~~~~~-- 354 (563)
++.-.++.+.+++..... .... . .......+|+|+|.++.|+++.......+|... .........
T Consensus 85 vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~ 164 (255)
T 3qqz_A 85 ISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDK 164 (255)
T ss_dssp EEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECH
T ss_pred EEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecch
Confidence 776667788888754321 1111 1 133456899999999888777665554555443 111111111
Q ss_pred -------ecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeec---CCC------cceeEEEECCCCCEEEEEeC
Q 008496 355 -------FHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFA---GHQ------GEVNCVKWDPTGSLLASCSD 418 (563)
Q Consensus 355 -------~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~---~h~------~~i~~~~~~~~~~~las~s~ 418 (563)
......+.++...+..++.+.....+..++.... ++..+. +.. .....|+|+++|++.++ |+
T Consensus 165 ~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE 242 (255)
T 3qqz_A 165 ALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGE-VIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SE 242 (255)
T ss_dssp HHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCC-EEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ET
T ss_pred hhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCC-EEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cC
Confidence 1112344555566667788888888888887643 443332 211 14578999999997665 66
Q ss_pred CCcEEEE
Q 008496 419 DVTAKIW 425 (563)
Q Consensus 419 dg~i~iw 425 (563)
-..+..+
T Consensus 243 ~n~~y~f 249 (255)
T 3qqz_A 243 PNRFYRF 249 (255)
T ss_dssp TTEEEEE
T ss_pred CceEEEE
Confidence 6554444
No 296
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.57 E-value=0.042 Score=53.52 Aligned_cols=60 Identities=12% Similarity=0.131 Sum_probs=41.2
Q ss_pred CCEEEEEEc-------CCCCEEEEEeCCCcEEEEecCCC-eeE--EEEe-c-CCCEEEEEEcCCCCEEEEEE
Q 008496 492 EPVYSLAFS-------PTGEYLASGSLDKSMHIWSLKEG-KIV--KTYT-G-NGGIFEVCWNKEGDKIAACF 551 (563)
Q Consensus 492 ~~i~~l~~s-------pdg~~lasgs~dg~v~iw~~~~~-~~~--~~~~-~-~~~i~~l~w~~~g~~la~~~ 551 (563)
.....++|. .+|.++++.-..+.|...++... +.. ..+- . ...+.++++.|||...++..
T Consensus 259 ~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 259 WAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp CCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred cCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 356788883 56777777666778888888753 332 2332 2 35689999999998766664
No 297
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.56 E-value=0.085 Score=57.10 Aligned_cols=215 Identities=11% Similarity=0.006 Sum_probs=123.2
Q ss_pred CCCcEEEEECCCCceeEEeeecccCe--EEEecCCCceEEEEeCCCeEEEEEcCCC----cceeeecCCCcceeEEEECC
Q 008496 335 CDKTAIVWDVKTEEWKQQFEFHSGPT--LDVDWRNNVSFATSSTDNMIYVCKIGEN----RPIKTFAGHQGEVNCVKWDP 408 (563)
Q Consensus 335 ~D~~v~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~d~~i~~~~~~~~----~~~~~~~~h~~~i~~~~~~~ 408 (563)
....|+..++........... ...+ +++++..+..|++-...+.|+.+++... .....+.........|++++
T Consensus 402 n~~~Ir~i~l~~~~~~~l~~~-~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~ 480 (791)
T 3m0c_C 402 NRHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW 480 (791)
T ss_dssp CBSSEEEECTTSCCCEEEECS-CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEET
T ss_pred cccceeEeeccCCcceeeecC-CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeee
Confidence 345677777766554433322 2223 3445556667777777788888887642 22233333344567899988
Q ss_pred CC-CEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeC-CCeEEEEeCCCCeEEEE
Q 008496 409 TG-SLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASF-DSTVKLWDVELGKLLYS 486 (563)
Q Consensus 409 ~~-~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~-dg~i~iwd~~~~~~~~~ 486 (563)
.+ +++++-+..+.|.+.++........+.........|++.|... .++.+-.. .+.|...++........
T Consensus 481 ~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g--------~LYwtD~g~~~~I~~~~~dG~~~~~l 552 (791)
T 3m0c_C 481 IHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHG--------FMYWTDWGTPAKIKKGGLNGVDIYSL 552 (791)
T ss_dssp TTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTT--------EEEEEECSSSCEEEEEETTSCCEEEE
T ss_pred cCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCC--------CEEEecCCCCCeEEEEecCCCceEEE
Confidence 76 4556666788999999876543333333334567888887532 23333322 36788888764333333
Q ss_pred ecCCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEecCCCeeEEEEecC---CCEEEEEEcCCCCEEEEE-ECCCeEEEEE
Q 008496 487 LNGHREPVYSLAFSPTGEYLASGS-LDKSMHIWSLKEGKIVKTYTGN---GGIFEVCWNKEGDKIAAC-FANHTVCVLD 560 (563)
Q Consensus 487 ~~~h~~~i~~l~~spdg~~lasgs-~dg~v~iw~~~~~~~~~~~~~~---~~i~~l~w~~~g~~la~~-~~~~~v~v~~ 560 (563)
+...-...+.|++++.+..|..+. ..+.|..+++............ ...+.|+.. +++|..+ ..++.|..+|
T Consensus 553 v~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~~d 629 (791)
T 3m0c_C 553 VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSAN 629 (791)
T ss_dssp ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEE
T ss_pred EeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEEEEe
Confidence 333334578999998776666554 4568999998654433333321 234566653 3344444 3455665554
No 298
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.54 E-value=0.2 Score=56.71 Aligned_cols=321 Identities=15% Similarity=0.168 Sum_probs=164.3
Q ss_pred CCceEEEEECCC------CCEEEEeeC-CCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCC
Q 008496 215 TSEVCACAWSPA------GSLLASGSG-DSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 287 (563)
Q Consensus 215 ~~~V~~~~~sp~------~~~latgs~-D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~ 287 (563)
..+|.|+++.|. +.++|.|.. |++++|+.+.+-.. .....+.... ....|.-+.+ ....
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~-----------~~~~~L~~~~--~p~si~l~~~-~~~~ 618 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFEL-----------LHKEMLGGEI--IPRSILMTTF-ESSH 618 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCE-----------EEEEECCSSC--CEEEEEEEEE-TTEE
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCe-----------EEEEECCCCC--CCcEEEEEEe-CCCc
Confidence 357999999874 368999986 99999999974221 1111111100 1122444444 2346
Q ss_pred EEEEEeCCCeEEEEEcC---CceeE---eeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeE
Q 008496 288 LLATGSYDGQARIWSTN---GDLKC---TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTL 361 (563)
Q Consensus 288 ~l~sg~~dg~i~vw~~~---~~~~~---~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~ 361 (563)
+|..|-.||.+.-+..+ |.+.. .+-+ ..|+.=..+...|..-+-+..++...++--+ +.+.- -.....++.
T Consensus 619 ~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG-~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~-~~l~~-s~l~~~~v~ 695 (1158)
T 3ei3_A 619 YLLCALGDGALFYFGLNIETGLLSDRKKVTLG-TQPTVLRTFRSLSTTNVFACSDRPTVIYSSN-HKLVF-SNVNLKEVN 695 (1158)
T ss_dssp EEEEEETTSEEEEEEECTTTCCEEEEEEEECC-SSCCEEEEEESSSCEEEEEESSSCEEEEESS-SSEEE-EEBSSSCCC
T ss_pred EEEEEeCCCeEEEEEEcCCCCccccceeEEcC-CCceEEEEEeeCCceeEEEECCCCEEEEEcC-CceEE-eccChHHhc
Confidence 88899999988666543 33322 2223 3355444444444443333345555555433 22111 111111221
Q ss_pred EE-ecCC---CceEEEEeCCCeEEEEEcCCCc--ceeeecCCCcceeEEEECCCCCEEEEEeCC----------------
Q 008496 362 DV-DWRN---NVSFATSSTDNMIYVCKIGENR--PIKTFAGHQGEVNCVKWDPTGSLLASCSDD---------------- 419 (563)
Q Consensus 362 ~~-~~~~---~~~~~~~~~d~~i~~~~~~~~~--~~~~~~~h~~~i~~~~~~~~~~~las~s~d---------------- 419 (563)
.+ .|.. ...++... ++.++++.+.... +++.+. -...+..++++|..+.++.+..+
T Consensus 696 ~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~~~~~~~ip-L~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 773 (1158)
T 3ei3_A 696 YMCPLNSDGYPDSLALAN-NSTLTIGTIDEIQKLHIRTVP-LYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPS 773 (1158)
T ss_dssp EEEEECCSSSTTEEEEEC-SSCEEEEEECCSSSEEEEEEE-CSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCC
T ss_pred eEeccCcccCCCcEEEEc-CCceEEEEecccCCeeEEEEe-CCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhh
Confidence 22 2221 23455433 4558888775432 233332 12356778888877765443311
Q ss_pred ---------------------------------CcEEEEeCCCCceeeeecc-cCCCEEEEEEccCCCCCCCCCCcEEEE
Q 008496 420 ---------------------------------VTAKIWNMKQDKYVHDLRE-HSKEIYTIRWSPTGSGTNNPNQQLILA 465 (563)
Q Consensus 420 ---------------------------------g~i~iwd~~~~~~~~~~~~-~~~~i~~~~~~p~~~~~~~~~~~~~l~ 465 (563)
+.|++.|..+.+.+..+.- ....+.+++.-.-.. .+ ..+++
T Consensus 774 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~---~~--~~~lv 848 (1158)
T 3ei3_A 774 ASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGK---DP--NTYFI 848 (1158)
T ss_dssp HHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTT---CC--CCEEE
T ss_pred hhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEcc---CC--CEEEE
Confidence 2356666666665544331 122344444322111 11 12555
Q ss_pred EEe----------CCCeEEEEeCCCCeEEEEe-cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEE-EEecCC
Q 008496 466 SAS----------FDSTVKLWDVELGKLLYSL-NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVK-TYTGNG 533 (563)
Q Consensus 466 s~s----------~dg~i~iwd~~~~~~~~~~-~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~-~~~~~~ 533 (563)
.|. ..|.|.++++..++..... ....++|++++-- +|++|| |- ..+|++|++...+.++ ......
T Consensus 849 VGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~-~g~Lla-~i-g~~l~vy~l~~~~~L~~~~~~~~ 925 (1158)
T 3ei3_A 849 VGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF-NGKLLA-SI-NSTVRLYEWTTEKELRTECNHYN 925 (1158)
T ss_dssp EEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEE-TTEEEE-EE-TTEEEEEEECTTSCEEEEEEECC
T ss_pred EEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeee-CCEEEE-Ec-CCEEEEEECCCCceEEEEeeccc
Confidence 554 3478999998755432211 2246789988632 454444 33 4689999998765444 111111
Q ss_pred CEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496 534 GIFEVCWNKEGDKIAACFANHTVCVLDFR 562 (563)
Q Consensus 534 ~i~~l~w~~~g~~la~~~~~~~v~v~~~~ 562 (563)
.|..+.....|+++++|..-..+.++-++
T Consensus 926 ~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~ 954 (1158)
T 3ei3_A 926 NIMALYLKTKGDFILVGDLMRSVLLLAYK 954 (1158)
T ss_dssp CSCEEEEEEETTEEEEEESSBCEEEEEEE
T ss_pred cEEEEEEeccCCEEEEEEhhheEEEEEEE
Confidence 22222233357788888877777777655
No 299
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.48 E-value=0.0033 Score=63.33 Aligned_cols=152 Identities=11% Similarity=0.191 Sum_probs=93.4
Q ss_pred ceeEEEECC-CCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCC----eEE
Q 008496 400 EVNCVKWDP-TGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDS----TVK 474 (563)
Q Consensus 400 ~i~~~~~~~-~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg----~i~ 474 (563)
....++++| ++..|..+...+.|+.+|+..+.... +.........++|++++. .++++...++ .+.
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~-~~~~~~~P~~ia~d~~G~--------~lyvad~~~~~~~~~v~ 208 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVST-VYSGLSKVRTICWTHEAD--------SMIITNDQNNNDRPNNY 208 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEE-EECCCSCEEEEEECTTSS--------EEEEEECCSCTTSEEEE
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEE-EecCCCCcceEEEeCCCC--------EEEEEeCCCCcccceEE
Confidence 456889998 34445444444889999988765433 333445578899988764 2444443322 233
Q ss_pred EEeCCCCeEE--EEecCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEecCCCeeEEEEec--CCCEEEEEEcCCCCEEEE
Q 008496 475 LWDVELGKLL--YSLNGHREPVYSLAFSP-TGEYLASGSLDKSMHIWSLKEGKIVKTYTG--NGGIFEVCWNKEGDKIAA 549 (563)
Q Consensus 475 iwd~~~~~~~--~~~~~h~~~i~~l~~sp-dg~~lasgs~dg~v~iw~~~~~~~~~~~~~--~~~i~~l~w~~~g~~la~ 549 (563)
+.+.. +... ..+... .....++++| +|.++++-..+++|..|+...+........ ......++|+|+|++|.+
T Consensus 209 ~~~~~-g~~~~~~~l~~~-~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv 286 (430)
T 3tc9_A 209 ILTRE-SGFKVITELTKG-QNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYI 286 (430)
T ss_dssp EEEGG-GTSCSEEEEEEC-SSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEE
T ss_pred EEeCC-CceeeeeeeccC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEE
Confidence 33322 2111 122111 2346788999 677777766788999999987765333222 234689999999996555
Q ss_pred E-ECCCeEEEEEee
Q 008496 550 C-FANHTVCVLDFR 562 (563)
Q Consensus 550 ~-~~~~~v~v~~~~ 562 (563)
+ ..++.|.+++..
T Consensus 287 ~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 287 VVVNQHYILRSDYD 300 (430)
T ss_dssp EETTTTEEEEEEEE
T ss_pred EECCCCEEEEEeCC
Confidence 5 567788887753
No 300
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.45 E-value=0.04 Score=58.10 Aligned_cols=223 Identities=9% Similarity=-0.009 Sum_probs=125.4
Q ss_pred CCeEEEEEcCCce--eEeeccCCCCEEEEEeCCCCCEEEEee-CCCcEEEEECCCCce-eEEeee--cccCeEEEecCCC
Q 008496 295 DGQARIWSTNGDL--KCTLSKHKGPIFSLKWNKKGDYLLTGS-CDKTAIVWDVKTEEW-KQQFEF--HSGPTLDVDWRNN 368 (563)
Q Consensus 295 dg~i~vw~~~~~~--~~~~~~h~~~V~~l~~~~~~~~l~s~s-~D~~v~iwd~~~~~~-~~~~~~--~~~~~~~~~~~~~ 368 (563)
...|+..++++.. ...+...-..+.+++|++.+..|+-+. ..+.|..+++..... ...+.. ....-+.++|...
T Consensus 17 ~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~ 96 (619)
T 3s94_A 17 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGE 96 (619)
T ss_dssp SSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTT
T ss_pred cccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCC
Confidence 4567777776542 222223344578999999777776554 457788888865432 112221 2223577889888
Q ss_pred ceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeC--CCcEEEEeCCCCceeeeecccCCCEEEE
Q 008496 369 VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD--DVTAKIWNMKQDKYVHDLREHSKEIYTI 446 (563)
Q Consensus 369 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~--dg~i~iwd~~~~~~~~~~~~~~~~i~~~ 446 (563)
..+++-...+.|.+.+.........+...-.....|+++|.+..|..... .+.|...++............-.....|
T Consensus 97 ~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Gl 176 (619)
T 3s94_A 97 KLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGL 176 (619)
T ss_dssp EEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEE
T ss_pred EEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEE
Confidence 88888888899999998765433333334455778999997555444432 3566666665443322222223445778
Q ss_pred EEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeE
Q 008496 447 RWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIV 526 (563)
Q Consensus 447 ~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~ 526 (563)
++.+.+. .+..+-...+.|...|+..........+.......|++..+ ..+.+-...+.|...|..+|+..
T Consensus 177 ald~~~~--------~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~ 247 (619)
T 3s94_A 177 TLDYEEQ--------KLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEGL 247 (619)
T ss_dssp EEETTTT--------EEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEEESSSCCCC
T ss_pred EEEccCC--------EEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCccc
Confidence 8877542 24445556678888888643322222211112246777665 44444445678999998777543
No 301
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.36 E-value=0.12 Score=50.12 Aligned_cols=65 Identities=15% Similarity=0.135 Sum_probs=43.2
Q ss_pred CCEEEEEEcC-------CCCEEEEEeCCCcEEEEecCCCeeEEEEe---c-CCCEEEEEEcCCCCEEEEEE-CCCeE
Q 008496 492 EPVYSLAFSP-------TGEYLASGSLDKSMHIWSLKEGKIVKTYT---G-NGGIFEVCWNKEGDKIAACF-ANHTV 556 (563)
Q Consensus 492 ~~i~~l~~sp-------dg~~lasgs~dg~v~iw~~~~~~~~~~~~---~-~~~i~~l~w~~~g~~la~~~-~~~~v 556 (563)
.....++|.. +|.++++.-..+.|...++..++.+.... . ...+.++++.|||...++.. .+|.|
T Consensus 271 ~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~td~~~g~I 347 (353)
T 2g8s_A 271 PAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLTDESSGEL 347 (353)
T ss_dssp CCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEECSTTEEE
T ss_pred cCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEEeCCCCEE
Confidence 3567788864 46777766677888888887765543321 2 34689999999998666543 34443
No 302
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.24 E-value=0.22 Score=50.40 Aligned_cols=114 Identities=8% Similarity=0.050 Sum_probs=64.1
Q ss_pred ceEEEEECCC--CCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEE-------CCCCC
Q 008496 217 EVCACAWSPA--GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDW-------NGEGT 287 (563)
Q Consensus 217 ~V~~~~~sp~--~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~-------s~~g~ 287 (563)
....++|+|. ++++++-...+.|++.|+.++.. ..+. ............++| +++|.
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v-----------~~l~---~~~~~~~~~p~~ia~~~~~~~~d~~G~ 205 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRML-----------SSPL---NINTIPTNRIRSIAFNKKIEGYADEAE 205 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEE-----------EEEE---CCTTSSCSBEEEEEECCCBTTTBCTTC
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEE-----------EEEE---ccCccccCCCcEEEEeecccccCCCCC
Confidence 3568899993 44555544446677777665321 1111 110112235788999 99999
Q ss_pred EEEEEeCCC-------eEEEEEcCC--cee-----EeeccCCCCEEEEEeCCCCCE-EEEeeCCCcEEEEECC
Q 008496 288 LLATGSYDG-------QARIWSTNG--DLK-----CTLSKHKGPIFSLKWNKKGDY-LLTGSCDKTAIVWDVK 345 (563)
Q Consensus 288 ~l~sg~~dg-------~i~vw~~~~--~~~-----~~~~~h~~~V~~l~~~~~~~~-l~s~s~D~~v~iwd~~ 345 (563)
.|+++...+ .+.+.+... ... ..+..... ..+++.+|++.+ +++-..++.|..+|+.
T Consensus 206 ~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~-p~giavdp~~g~LYvtd~~~g~V~r~d~~ 277 (496)
T 3kya_A 206 YMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAYKQ-CNGATIHPINGELYFNSYEKGQVFRLDLV 277 (496)
T ss_dssp EEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEESC-CCCEEECTTTCCEEEEETTTTEEEEECHH
T ss_pred EEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccCCC-ceEEEEcCCCCeEEEEECCCCEEEEEecc
Confidence 666666554 255554332 322 12222222 246778885444 4555567788888886
No 303
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.17 E-value=0.037 Score=52.54 Aligned_cols=153 Identities=12% Similarity=0.178 Sum_probs=95.8
Q ss_pred EEecCC-CceEEEE-eCCCeEEEEEcCCCccee-eecC----CCc--ceeEEEE---CCCCCEEEEEe------------
Q 008496 362 DVDWRN-NVSFATS-STDNMIYVCKIGENRPIK-TFAG----HQG--EVNCVKW---DPTGSLLASCS------------ 417 (563)
Q Consensus 362 ~~~~~~-~~~~~~~-~~d~~i~~~~~~~~~~~~-~~~~----h~~--~i~~~~~---~~~~~~las~s------------ 417 (563)
++.|.. ...|..+ -..+.|..|+...+.... .+.+ ... .+..|.| .|+++++++..
T Consensus 17 ~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~ 96 (334)
T 2p9w_A 17 DTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSS 96 (334)
T ss_dssp CEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCS
T ss_pred CccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccccc
Confidence 455643 3444444 468899999886443222 2332 111 3578999 68888887543
Q ss_pred -CCCcEEEEeCC---CCceeeeec--ccC-----------CCEEEEEEccCCCCCCCCCCcEEEEEEeCC-CeEEEEeCC
Q 008496 418 -DDVTAKIWNMK---QDKYVHDLR--EHS-----------KEIYTIRWSPTGSGTNNPNQQLILASASFD-STVKLWDVE 479 (563)
Q Consensus 418 -~dg~i~iwd~~---~~~~~~~~~--~~~-----------~~i~~~~~~p~~~~~~~~~~~~~l~s~s~d-g~i~iwd~~ 479 (563)
.+..+..||+. +++.+.... ... .....++..++|. ..++++.- +.|...+..
T Consensus 97 ~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~Gn---------aYVt~s~~~~~I~rV~pd 167 (334)
T 2p9w_A 97 HGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGN---------SYVAFALGMPAIARVSAD 167 (334)
T ss_dssp SSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSC---------EEEEEEESSCEEEEECTT
T ss_pred CCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCC---------EEEeCCCCCCeEEEEeCC
Confidence 15778999998 676543322 211 2367788888775 45667777 777777765
Q ss_pred CCeEE-EEec----CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 008496 480 LGKLL-YSLN----GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEG 523 (563)
Q Consensus 480 ~~~~~-~~~~----~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~ 523 (563)
-.... +-+. ......+.|+++|||+.|++....|.|..+|+.+-
T Consensus 168 G~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~p 216 (334)
T 2p9w_A 168 GKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKP 216 (334)
T ss_dssp SCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSS
T ss_pred CCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCC
Confidence 32222 1111 11223578999999998888777999999998743
No 304
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.13 E-value=0.0021 Score=68.97 Aligned_cols=215 Identities=11% Similarity=-0.042 Sum_probs=114.2
Q ss_pred CCeEEEEECCCCCEEEEE-eCCCeEEEEEcCC----ceeE-eeccCCCCEEEEEeCCCCCEE-EEeeCCCcEEEEECCCC
Q 008496 275 KDVTTLDWNGEGTLLATG-SYDGQARIWSTNG----DLKC-TLSKHKGPIFSLKWNKKGDYL-LTGSCDKTAIVWDVKTE 347 (563)
Q Consensus 275 ~~V~~l~~s~~g~~l~sg-~~dg~i~vw~~~~----~~~~-~~~~h~~~V~~l~~~~~~~~l-~s~s~D~~v~iwd~~~~ 347 (563)
..+..|+|++.+..|..+ ...+.|+.+++.+ .... .+........+|++.+.+..| ++-...+.|.+.++...
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 345678999866655554 4557888888875 2211 121111234567777554444 44455678999998765
Q ss_pred ceeEEeeec--ccCeEEEecCCCceEEEEeCC-CeEEEEEcCCCcceeeecCCCcceeEEEECCCC-CEEEEEeCCCcEE
Q 008496 348 EWKQQFEFH--SGPTLDVDWRNNVSFATSSTD-NMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTG-SLLASCSDDVTAK 423 (563)
Q Consensus 348 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~d-~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~-~~las~s~dg~i~ 423 (563)
.....+... ...-+.+++.....|++-... +.|++.++........+...-...+.|+|+|++ .++++-+..+.|.
T Consensus 486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~ 565 (699)
T 1n7d_A 486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSIS 565 (699)
T ss_dssp CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEE
T ss_pred ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEE
Confidence 433322211 112233444444445444333 667766654332222222222346789999875 4555556677899
Q ss_pred EEeCCCCceeeeecc--cCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEE
Q 008496 424 IWNMKQDKYVHDLRE--HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAF 499 (563)
Q Consensus 424 iwd~~~~~~~~~~~~--~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~ 499 (563)
.+++........+.. .......|++.. ..++.+....+.|..+|..+|+.+..+.......+.|++
T Consensus 566 ~~d~dG~~~~~~~~~~~~~~~P~glavd~----------~~lywtd~~~~~V~~~d~~~G~~~~~i~~~~~~P~~i~v 633 (699)
T 1n7d_A 566 SIDVNGGNRKTILEDEKRLAHPFSLAVFE----------DKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVL 633 (699)
T ss_dssp EECSSSSCCEEECCCSSSCSSCCCCEEET----------TEEEEECSTTTCEEEEETTTEEEEECCCTTCSSCCCCCB
T ss_pred EEccCCCceEEEEecCCcCCCceEeEEEC----------CEEEEEeCCCCeEEEEEccCCCceEEeecCCCCCcEEEE
Confidence 999865332211111 011112222211 135566667788999998888877766432222344443
No 305
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=96.95 E-value=0.32 Score=47.17 Aligned_cols=101 Identities=13% Similarity=0.141 Sum_probs=57.5
Q ss_pred CceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCC---CCEEEEE
Q 008496 216 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE---GTLLATG 292 (563)
Q Consensus 216 ~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~---g~~l~sg 292 (563)
..-..++|.|+|+++++ ..++.|++++ ++.. ..+.... ...........|+|+|+ +..|..+
T Consensus 31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~-----------~~~~~~~-v~~~g~~~p~gia~~pdf~~~g~lYv~ 95 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRL-----------STYAELS-VYHRGESGLLGLALHPRFPQEPYVYAY 95 (352)
T ss_dssp SCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEE-----------EEEEECC-CCCSTTCSEEEEEECTTTTTSCEEEEE
T ss_pred CCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCc-----------cEeecce-EeecCCCCceeEEECCCCCCCCEEEEE
Confidence 34578999999997665 4568888887 3221 0111111 11112345789999998 4444443
Q ss_pred -eCC-----CeEEEEEcCCc-------eeEeec-----cCCCCEEEEEeCCCCCEEEEe
Q 008496 293 -SYD-----GQARIWSTNGD-------LKCTLS-----KHKGPIFSLKWNKKGDYLLTG 333 (563)
Q Consensus 293 -~~d-----g~i~vw~~~~~-------~~~~~~-----~h~~~V~~l~~~~~~~~l~s~ 333 (563)
... +.|..++..+. +...+. .|. ...++|.|+|...++.
T Consensus 96 ~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~--~~~l~~~pdG~Lyv~~ 152 (352)
T 2ism_A 96 RTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHS--GGRIAFGPDGMLYVTT 152 (352)
T ss_dssp EEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCC--CCCEEECTTSCEEEEC
T ss_pred EecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcC--CceEEECCCCCEEEEE
Confidence 332 56767776542 111122 122 2579999999766654
No 306
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=96.91 E-value=0.55 Score=49.41 Aligned_cols=318 Identities=11% Similarity=0.045 Sum_probs=168.0
Q ss_pred CCCceEEEEECCCC-CEEEEe-eCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEE
Q 008496 214 HTSEVCACAWSPAG-SLLASG-SGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLAT 291 (563)
Q Consensus 214 h~~~V~~~~~sp~~-~~latg-s~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~s 291 (563)
.-.....++++|.. .++.|- +..+.|...++..... . .+.. .......|++++++..|..
T Consensus 121 ~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~---------~--~l~~-------~~~~P~GlalD~~~~~LY~ 182 (628)
T 4a0p_A 121 DLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSER---------T--TLVP-------NVGRANGLTIDYAKRRLYW 182 (628)
T ss_dssp SCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC---------E--EEEC-------SCSSEEEEEEETTTTEEEE
T ss_pred CCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCce---------E--EEEC-------CCCCcceEEEccccCEEEE
Confidence 33456899999964 444443 2245555555532210 1 1110 1245678999997666665
Q ss_pred Ee-CCCeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCe----------
Q 008496 292 GS-YDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPT---------- 360 (563)
Q Consensus 292 g~-~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~---------- 360 (563)
+. ..+.|...+.+|.....+........+|++.. +..+++-...+.|...|..+++....+.......
T Consensus 183 aD~~~~~I~~~d~dG~~~~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~~~~l~~~~~~p~~i~v~~~~~ 261 (628)
T 4a0p_A 183 TDLDTNLIESSNMLGLNREVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMDILVFHSSR 261 (628)
T ss_dssp EETTTTEEEEEETTSCSCEEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEEECSCCSCCEEEEECGGG
T ss_pred EECCCCEEEEEcCCCCceEEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCCceEEEecCCCCcceeeeeeecc
Confidence 54 56789999988754444444444456777754 3334444446788888876665333222111000
Q ss_pred ----------------EEEecCCCceEEEEe-----------------------CCCeEEEEEcCCCc-ceeeecC-CCc
Q 008496 361 ----------------LDVDWRNNVSFATSS-----------------------TDNMIYVCKIGENR-PIKTFAG-HQG 399 (563)
Q Consensus 361 ----------------~~~~~~~~~~~~~~~-----------------------~d~~i~~~~~~~~~-~~~~~~~-h~~ 399 (563)
+++.... ..+.+.. ....|+...+.... +...+.. .-.
T Consensus 262 q~~~n~C~~~ng~C~~~C~~~~~-~~~~C~C~~g~~l~~d~~~C~~~~~~Ll~s~~~~i~~i~l~~~~~~~~~l~~~~~~ 340 (628)
T 4a0p_A 262 QSGWNECASSNGHCSHLCLAVPV-GGFVCGCPAHYSLNADNRTCSAPTTFLLFSQKSAINRMVIDEQQSPDIILPIHSLR 340 (628)
T ss_dssp SCCCCTTTTTGGGCSSEEEEETT-TEEEEECSTTCEECTTSSCEECCSSEEEEEETTEEEEECCCTTCCCCEECCCTTCS
T ss_pred cccceEeccCCCCcchhhhcCCC-CCeeEEcCCCcEecccCCcCccccceeeeeccceEEEEecccccCceEEEEehhcC
Confidence 1111000 1111111 11112211111110 0001111 113
Q ss_pred ceeEEEECCCCCEEE-EEeCCCcEEEEeCCCCceeeeecc------cCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCe
Q 008496 400 EVNCVKWDPTGSLLA-SCSDDVTAKIWNMKQDKYVHDLRE------HSKEIYTIRWSPTGSGTNNPNQQLILASASFDST 472 (563)
Q Consensus 400 ~i~~~~~~~~~~~la-s~s~dg~i~iwd~~~~~~~~~~~~------~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~ 472 (563)
.+..++|++....|. +=...+.|+.+++........+.. .......+++.+.+. .+..+-+..+.
T Consensus 341 ~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~--------nLY~td~~~~~ 412 (628)
T 4a0p_A 341 NVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSR--------YIYWTCEATNV 412 (628)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTT--------EEEEEETTTTE
T ss_pred CceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCC--------eEEEEcCCCCE
Confidence 466899988655554 444567788888765433222222 223567788776543 35566777888
Q ss_pred EEEEeCCCCeEEEEe-cCCCCCEEEEEEcC-CCCEEEEEeCCC--cEEEEecCCCeeEEEE-e-cCCCEEEEEEcCCCCE
Q 008496 473 VKLWDVELGKLLYSL-NGHREPVYSLAFSP-TGEYLASGSLDK--SMHIWSLKEGKIVKTY-T-GNGGIFEVCWNKEGDK 546 (563)
Q Consensus 473 i~iwd~~~~~~~~~~-~~h~~~i~~l~~sp-dg~~lasgs~dg--~v~iw~~~~~~~~~~~-~-~~~~i~~l~w~~~g~~ 546 (563)
|.+.++. |+....+ ........+|++.| .|.++.+-.... .|...++. |.....+ . .-.....|+.++++++
T Consensus 413 I~v~~~~-G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~d-G~~~~~l~~~~l~~P~gla~D~~~~~ 490 (628)
T 4a0p_A 413 INVTRLD-GRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALD-GTEREVLFFSGLSKPIALALDSRLGK 490 (628)
T ss_dssp EEEEETT-SCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETT-SCSCEEEECSSCSCEEEEEEETTTTE
T ss_pred EEEEECC-CCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCC-CCCcEEEEeccCCCccEEEEeCCCCE
Confidence 9999886 4444333 23334578999999 565555533332 56666654 3322222 2 2235688999999888
Q ss_pred EEEEEC-CCeEEEEEe
Q 008496 547 IAACFA-NHTVCVLDF 561 (563)
Q Consensus 547 la~~~~-~~~v~v~~~ 561 (563)
|..+.. .+.|..+|+
T Consensus 491 LYw~D~~~~~I~~~~~ 506 (628)
T 4a0p_A 491 LFWADSDLRRIESSDL 506 (628)
T ss_dssp EEEEETTTTEEEEEET
T ss_pred EEEEeCCCCEEEEEeC
Confidence 877744 466776664
No 307
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.87 E-value=0.075 Score=51.41 Aligned_cols=155 Identities=14% Similarity=0.098 Sum_probs=89.8
Q ss_pred eeEEEECCCCCEEEEEe------------CCCcEEEEeCCCCc-eeeee--cc-----cCCCEEEEEEccCCCCCCCCCC
Q 008496 401 VNCVKWDPTGSLLASCS------------DDVTAKIWNMKQDK-YVHDL--RE-----HSKEIYTIRWSPTGSGTNNPNQ 460 (563)
Q Consensus 401 i~~~~~~~~~~~las~s------------~dg~i~iwd~~~~~-~~~~~--~~-----~~~~i~~~~~~p~~~~~~~~~~ 460 (563)
.-.+...|+|..+++++ .+|.|.++|.++.. ....+ .+ ..-....+.+.++.. ..
T Consensus 52 ~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~d-----g~ 126 (355)
T 3sre_A 52 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDD-----NT 126 (355)
T ss_dssp CCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTT-----CC
T ss_pred cceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCC-----Cc
Confidence 34566788877666652 68999999987421 11122 11 122445555544311 11
Q ss_pred cEEEEEEeC--CCeEEEEeCCC--CeE--EEEecCC-CCCEEEEEEcCCCCEEEEEeC-----------------CCcEE
Q 008496 461 QLILASASF--DSTVKLWDVEL--GKL--LYSLNGH-REPVYSLAFSPTGEYLASGSL-----------------DKSMH 516 (563)
Q Consensus 461 ~~~l~s~s~--dg~i~iwd~~~--~~~--~~~~~~h-~~~i~~l~~spdg~~lasgs~-----------------dg~v~ 516 (563)
..++++-.. +.+|.+|++.. +.. +..+.+. -...+.+++.++|.++++... .|.|.
T Consensus 127 ~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vy 206 (355)
T 3sre_A 127 VYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVT 206 (355)
T ss_dssp EEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEE
T ss_pred EEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEE
Confidence 123333332 56788887654 222 3334332 235789999999998887641 24455
Q ss_pred EEecCCCeeEEEEecCCCEEEEEEcCCCCEEEEEE-CCCeEEEEEee
Q 008496 517 IWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACF-ANHTVCVLDFR 562 (563)
Q Consensus 517 iw~~~~~~~~~~~~~~~~i~~l~w~~~g~~la~~~-~~~~v~v~~~~ 562 (563)
-++. +++.....+-...+.++|+|||+.|.++. ..+.|.+|+++
T Consensus 207 r~d~--~~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~ 251 (355)
T 3sre_A 207 YYSP--NDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKH 251 (355)
T ss_dssp EECT--TCCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred EEEC--CeEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEEC
Confidence 5554 34333333334568999999999888774 46788888874
No 308
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.84 E-value=0.11 Score=50.94 Aligned_cols=133 Identities=15% Similarity=0.165 Sum_probs=83.1
Q ss_pred CeEEEEEcCCCcceeeecCC----CcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCc------------eeeeecc---
Q 008496 378 NMIYVCKIGENRPIKTFAGH----QGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK------------YVHDLRE--- 438 (563)
Q Consensus 378 ~~i~~~~~~~~~~~~~~~~h----~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~------------~~~~~~~--- 438 (563)
+.|+.+++......+.+.-. -..|..+..+|+|++||..+.. .|.|-.+..+. ....++-
T Consensus 41 n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~-~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~ 119 (452)
T 3pbp_A 41 NIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDN-EIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEE 119 (452)
T ss_dssp TEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSS-EEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGC
T ss_pred CEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCC-eEEEEEecCccccCcccccccccceeEEEcCCc
Confidence 45566666543334443322 2257789999999999888654 77777665221 0112221
Q ss_pred ---cCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC--eEEEEec---------CCCCCEEEEEEcCCCC
Q 008496 439 ---HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG--KLLYSLN---------GHREPVYSLAFSPTGE 504 (563)
Q Consensus 439 ---~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~--~~~~~~~---------~h~~~i~~l~~spdg~ 504 (563)
...+|..+.|+|.+.. + ..|++-..|+.||+||+... ++. .++ .....|.+++|+++|-
T Consensus 120 ~~~~~s~I~qVlWHPl~~~-----d-s~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~l 192 (452)
T 3pbp_A 120 EVGPKSSIKKVLFHPKSYR-----D-SCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGL 192 (452)
T ss_dssp C--CCCCEEEEEECTTBGG-----G-CEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSS
T ss_pred ccCCCCceeEEEeccccCC-----C-CeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCc
Confidence 2467999999998752 1 14667778999999999752 112 222 2235688999999886
Q ss_pred EEEEEe--CCCcEEEE
Q 008496 505 YLASGS--LDKSMHIW 518 (563)
Q Consensus 505 ~lasgs--~dg~v~iw 518 (563)
.|...+ ..|.|+-.
T Consensus 193 TLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 193 TLYCLNTTEGGDIFAF 208 (452)
T ss_dssp CEEEEECTTSCEEEEE
T ss_pred EEEEEecCCCCCEEEE
Confidence 555544 67777543
No 309
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.79 E-value=0.22 Score=48.20 Aligned_cols=176 Identities=15% Similarity=0.159 Sum_probs=96.2
Q ss_pred CCCcEEEEECCCCc-eeEEeeecc-------cCeEEEecC---CC--ceEEEEeC--CCeEEEEEcCCCc----ceeeec
Q 008496 335 CDKTAIVWDVKTEE-WKQQFEFHS-------GPTLDVDWR---NN--VSFATSST--DNMIYVCKIGENR----PIKTFA 395 (563)
Q Consensus 335 ~D~~v~iwd~~~~~-~~~~~~~~~-------~~~~~~~~~---~~--~~~~~~~~--d~~i~~~~~~~~~----~~~~~~ 395 (563)
.+|.|.++|+.+.. ....+.... .....++.. ++ ..|++-.. +..|-++++.... .+..+.
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~ 160 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR 160 (355)
T ss_dssp -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence 68899999987321 122222211 234444431 12 23444444 4567777665432 233343
Q ss_pred CCC-cceeEEEECCCCCEEEEEeC---C------------CcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCC
Q 008496 396 GHQ-GEVNCVKWDPTGSLLASCSD---D------------VTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPN 459 (563)
Q Consensus 396 ~h~-~~i~~~~~~~~~~~las~s~---d------------g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~ 459 (563)
+.. ...+.+.+.++|.+.++..- | ..=++|.+..++ +..+...-..-..++|+|++.
T Consensus 161 g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~~-~~~~~~~l~~pNGia~spDg~------ 233 (355)
T 3sre_A 161 HKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPND-VRVVAEGFDFANGINISPDGK------ 233 (355)
T ss_dssp CTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTTC-CEEEEEEESSEEEEEECTTSS------
T ss_pred cCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECCe-EEEeecCCcccCcceECCCCC------
Confidence 322 35789999999998877641 1 122344333332 222222223457899999875
Q ss_pred CcEEEEEEeCCCeEEEEeCCC-CeE--EEEecCCCCCEEEEEEcC-CCCEEEEEeCC-CcEEEEec
Q 008496 460 QQLILASASFDSTVKLWDVEL-GKL--LYSLNGHREPVYSLAFSP-TGEYLASGSLD-KSMHIWSL 520 (563)
Q Consensus 460 ~~~~l~s~s~dg~i~iwd~~~-~~~--~~~~~~h~~~i~~l~~sp-dg~~lasgs~d-g~v~iw~~ 520 (563)
.+.++-+..+.|..|++.. ++. ...+. .....-.+++.+ +|++.+++..+ +.|..|+.
T Consensus 234 --~lYvadt~~~~I~~~~~~~~g~l~~~~~~~-~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~P 296 (355)
T 3sre_A 234 --YVYIAELLAHKIHVYEKHANWTLTPLRVLS-FDTLVDNISVDPVTGDLWVGCHPNGMRIFFYDA 296 (355)
T ss_dssp --EEEEEEGGGTEEEEEEECTTSCEEEEEEEE-CSSEEEEEEECTTTCCEEEEEESCHHHHHSCCT
T ss_pred --EEEEEeCCCCeEEEEEECCCCcEecCEEEe-CCCCCceEEEeCCCCcEEEEecCCceEEEEECC
Confidence 3556666788999999863 332 12232 234567899999 59988876644 23444443
No 310
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=96.76 E-value=0.38 Score=45.29 Aligned_cols=207 Identities=12% Similarity=0.183 Sum_probs=130.0
Q ss_pred eCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcC-CCcceeeecCCCc--
Q 008496 323 WNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIG-ENRPIKTFAGHQG-- 399 (563)
Q Consensus 323 ~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~-~~~~~~~~~~h~~-- 399 (563)
.||..+.++-=+ ..++.++|+++...++.+.+. .++.=-.|.+...++... +..||.|++. ...|++.|..|..
T Consensus 74 MnP~~~ViALra-g~~LQiFnletK~klks~~~~-e~VvfWkWis~~~L~lVT-~taVyHWs~~~~s~P~kvFdR~~~L~ 150 (365)
T 2xzh_A 74 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLA 150 (365)
T ss_dssp ECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECS-SCEEEEEECSSSEEEEEE-SSEEEEEESSTTCCCEEEEECCGGGT
T ss_pred eCCCccEEEEec-CCeEEEechHHhhhhcceecC-CccEEEEecCCCeEEEEc-CCcEEEEcccCCCCCceeeecchhcc
Confidence 477776555443 678999999999888887775 466667788887766543 5689999996 4578888887753
Q ss_pred --ceeEEEECCCCCEEEEEeC-------CCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCC
Q 008496 400 --EVNCVKWDPTGSLLASCSD-------DVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD 470 (563)
Q Consensus 400 --~i~~~~~~~~~~~las~s~-------dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~d 470 (563)
.|..-..+++.++++..+- .|.+.+|....+. .+.+.+|......+. .+|. +....+++-+...
T Consensus 151 ~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieGhaa~F~~~~--~~g~----~~~~~lf~fa~r~ 223 (365)
T 2xzh_A 151 GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFK--MEGN----AEESTLFCFAVRG 223 (365)
T ss_dssp TCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE-EEEECCSEEEEEEEC--CTTC----SSCEEEEEEEEEE
T ss_pred cceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccc-cceeeeeeeeeEEEe--cCCC----CCCceEEEEEEec
Confidence 5667778999998765432 3667888876543 345666655433332 2322 1112233333322
Q ss_pred ---CeEEEEeCCCC---e-----EEEEe-c---CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEec-CCC
Q 008496 471 ---STVKLWDVELG---K-----LLYSL-N---GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG-NGG 534 (563)
Q Consensus 471 ---g~i~iwd~~~~---~-----~~~~~-~---~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~-~~~ 534 (563)
+.++|-++... . ....+ - .-.+---++..|+--..+..-+.-|.|++||+.+|.++-.-.- ...
T Consensus 224 ~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~~nrIS~d~ 303 (365)
T 2xzh_A 224 QAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGET 303 (365)
T ss_dssp TTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSC
T ss_pred CCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEEeccCCCc
Confidence 57888887432 1 11111 0 0112234567777666777888999999999999998755432 334
Q ss_pred EEEEE
Q 008496 535 IFEVC 539 (563)
Q Consensus 535 i~~l~ 539 (563)
|+--+
T Consensus 304 iF~ta 308 (365)
T 2xzh_A 304 IFVTA 308 (365)
T ss_dssp EEEEE
T ss_pred eEEec
Confidence 44333
No 311
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=96.56 E-value=0.66 Score=45.54 Aligned_cols=211 Identities=13% Similarity=0.185 Sum_probs=133.6
Q ss_pred eCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcC-CCcceeeecCCCc--
Q 008496 323 WNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIG-ENRPIKTFAGHQG-- 399 (563)
Q Consensus 323 ~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~-~~~~~~~~~~h~~-- 399 (563)
.||..+.++-=+ ..++.|+|+.+...+..+.+.. ++.=-.|.+...++.. ++..||.|++. ...|++.|..|..
T Consensus 73 MnP~~~iiALra-g~~lQiFnle~K~klks~~~~e-~VvfWkWis~~~l~lV-T~taVyHWsi~~~s~P~kvFdR~~~L~ 149 (494)
T 1bpo_A 73 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLNTVALV-TDNAVYHWSMEGESQPVKMFDRHSSLA 149 (494)
T ss_dssp ECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEEEETTEEEEE-CSSEEEEEESSSSCCCEEEEECCGGGT
T ss_pred eCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC-CceEEEecCCCeEEEE-cCCeeEEecccCCCCchhheecchhcc
Confidence 466666554433 6799999999998888877755 4555677777666554 45689999996 4578888887743
Q ss_pred --ceeEEEECCCCCEEEEEe-------CCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCC
Q 008496 400 --EVNCVKWDPTGSLLASCS-------DDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD 470 (563)
Q Consensus 400 --~i~~~~~~~~~~~las~s-------~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~d 470 (563)
.|..-..+++.++++..+ -.|.+.+|+...+. ...+.+|......+.. +|. +....+++-+...
T Consensus 150 ~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieGhaa~F~~~~~--~g~----~~~~~lf~fa~r~ 222 (494)
T 1bpo_A 150 GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKM--EGN----AEESTLFCFAVRG 222 (494)
T ss_dssp TCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC-EEEECCSEEEEEEEEC--TTC----SSEEEEEEEEECS
T ss_pred cceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc-cchheeeeeeeEEEec--CCC----CCCceEEEEEEec
Confidence 577778899999876443 24667888876553 3456677654444332 221 1112244444443
Q ss_pred ---CeEEEEeCCCC--------eEEEEec----CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEec-CCC
Q 008496 471 ---STVKLWDVELG--------KLLYSLN----GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG-NGG 534 (563)
Q Consensus 471 ---g~i~iwd~~~~--------~~~~~~~----~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~-~~~ 534 (563)
+.++|-++... +....+. .-.+---++..|+.-..+..-+.-|.|++||+.+|.++-.-.- ...
T Consensus 223 ~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~ 302 (494)
T 1bpo_A 223 QAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGET 302 (494)
T ss_dssp TTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSC
T ss_pred CCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecccCCc
Confidence 68888887532 1111110 1112234677788777788888999999999999997755432 334
Q ss_pred EEEEEEcCC
Q 008496 535 IFEVCWNKE 543 (563)
Q Consensus 535 i~~l~w~~~ 543 (563)
|+--+-+..
T Consensus 303 iF~t~~~~~ 311 (494)
T 1bpo_A 303 IFVTAPHEA 311 (494)
T ss_dssp EEEEEEETT
T ss_pred eEEecccCC
Confidence 544444333
No 312
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=96.47 E-value=0.2 Score=47.10 Aligned_cols=223 Identities=11% Similarity=0.124 Sum_probs=109.2
Q ss_pred CCCEEEEEe-CC-----CeEEEEEcCCceeEeeccC---CCCEEEEEeCCCCCEEEEeeCC-----CcEEEEECCCCc--
Q 008496 285 EGTLLATGS-YD-----GQARIWSTNGDLKCTLSKH---KGPIFSLKWNKKGDYLLTGSCD-----KTAIVWDVKTEE-- 348 (563)
Q Consensus 285 ~g~~l~sg~-~d-----g~i~vw~~~~~~~~~~~~h---~~~V~~l~~~~~~~~l~s~s~D-----~~v~iwd~~~~~-- 348 (563)
++.+++.|+ .+ ..+.+||.....-..+... ......+. .++..++.|+.+ ..+.+||+.+..
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~ 91 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVS--LHDRIYVIGGYDGRSRLSSVECLDYTADEDG 91 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTCCTTC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEE--ECCEEEEEcCCCCCccCceEEEEECCCCCCC
Confidence 345666666 33 3677888765433332211 11111222 245666677654 468999998887
Q ss_pred -eeEEeeecccC-eEEEecCCCceEEEEeCC-----CeEEEEEcCCCcc--eeeecCCCcceeEEEECCCCCEEEEEeCC
Q 008496 349 -WKQQFEFHSGP-TLDVDWRNNVSFATSSTD-----NMIYVCKIGENRP--IKTFAGHQGEVNCVKWDPTGSLLASCSDD 419 (563)
Q Consensus 349 -~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d-----~~i~~~~~~~~~~--~~~~~~h~~~i~~~~~~~~~~~las~s~d 419 (563)
|...-...... ...+...++..++.++.+ ..+.+++..+..- +..+........++.+ ++++++.|+.+
T Consensus 92 ~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~ 169 (301)
T 2vpj_A 92 VWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCLGGYD 169 (301)
T ss_dssp CCEEECCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEECCBC
T ss_pred eeEECCCCCCCccceeEEEECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEEECCCC
Confidence 76543221111 111122245555655533 3577777765431 1112111111222223 67777777754
Q ss_pred -----CcEEEEeCCCCceeee--ecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCC-----CeEEEEeCCCCeEEEE-
Q 008496 420 -----VTAKIWNMKQDKYVHD--LREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD-----STVKLWDVELGKLLYS- 486 (563)
Q Consensus 420 -----g~i~iwd~~~~~~~~~--~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~d-----g~i~iwd~~~~~~~~~- 486 (563)
..+.+||..+...... +.........+.+ + + .+++.|+.+ ..+.+||+.+.+-...
T Consensus 170 ~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~--------~-~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~ 238 (301)
T 2vpj_A 170 GLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--N--------D-HIYVVGGFDGTAHLSSVEAYNIRTDSWTTVT 238 (301)
T ss_dssp SSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--T--------T-EEEEECCBCSSSBCCCEEEEETTTTEEEEEC
T ss_pred CCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--C--------C-EEEEEeCCCCCcccceEEEEeCCCCcEEECC
Confidence 3578888877654321 1110001111111 1 1 245556553 4688999887653221
Q ss_pred -ecCCCCCEEEEEEcCCCCEEEEEeCC-----CcEEEEecCCCe
Q 008496 487 -LNGHREPVYSLAFSPTGEYLASGSLD-----KSMHIWSLKEGK 524 (563)
Q Consensus 487 -~~~h~~~i~~l~~spdg~~lasgs~d-----g~v~iw~~~~~~ 524 (563)
+.........+.+ ++++++.|+.+ ..|.+||+.+.+
T Consensus 239 ~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 239 SMTTPRCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp CCSSCCBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred CCCCcccceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence 1111111122333 67777777765 357888887654
No 313
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=96.06 E-value=1.1 Score=43.21 Aligned_cols=101 Identities=14% Similarity=0.123 Sum_probs=56.4
Q ss_pred CceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCC----CCEEEE
Q 008496 216 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE----GTLLAT 291 (563)
Q Consensus 216 ~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~----g~~l~s 291 (563)
.....++|.|+|+++++ ..++.|++++ .++. ..+.... ...........|+++|+ +.+.++
T Consensus 29 ~~P~~ia~~pdG~l~V~-e~~g~I~~~d-~~G~------------~~~~~~~-v~~~g~~g~~gia~~pdf~~~g~lyv~ 93 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVT-ERPGRLVLIS-PSGK------------KLVASFD-VANVGEAGLLGLALHPEFPKKSWVYLY 93 (354)
T ss_dssp SCEEEEEEEETTEEEEE-ETTTEEEEEC-SSCE------------EEEEECC-CCCSTTCSEEEEEECTTTTTSCEEEEE
T ss_pred CCCeEEEEcCCCeEEEE-eCCCEEEEEe-CCCc------------eEeeccc-eeecCCCceeeEEeCCCCCcCCEEEEE
Confidence 44678999999986665 4568888886 2221 0111111 01111245789999997 444444
Q ss_pred EeC---C----CeEEEEEcCCc------ee---Eeec---cCCCCEEEEEeCCCCCEEEEe
Q 008496 292 GSY---D----GQARIWSTNGD------LK---CTLS---KHKGPIFSLKWNKKGDYLLTG 333 (563)
Q Consensus 292 g~~---d----g~i~vw~~~~~------~~---~~~~---~h~~~V~~l~~~~~~~~l~s~ 333 (563)
-+. + ..|..|+..+. .. ..+. .|. ...|.|.|+|...++.
T Consensus 94 ~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~--~~~l~~~pDG~Lyvt~ 152 (354)
T 3a9g_A 94 ASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHN--GGRIRFGPDGMLYITT 152 (354)
T ss_dssp EEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCC--CCCEEECTTSCEEEEC
T ss_pred EeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcC--CceEEECCCCcEEEEE
Confidence 332 2 45666665543 11 1122 232 3568999999866664
No 314
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=95.92 E-value=0.57 Score=43.98 Aligned_cols=222 Identities=15% Similarity=0.160 Sum_probs=105.5
Q ss_pred CCEEEEEeCC----CeEEEEEcCCceeEeeccCCC---CEEEEEeCCCCCEEEEeeCC-----CcEEEEECCCCceeEEe
Q 008496 286 GTLLATGSYD----GQARIWSTNGDLKCTLSKHKG---PIFSLKWNKKGDYLLTGSCD-----KTAIVWDVKTEEWKQQF 353 (563)
Q Consensus 286 g~~l~sg~~d----g~i~vw~~~~~~~~~~~~h~~---~V~~l~~~~~~~~l~s~s~D-----~~v~iwd~~~~~~~~~~ 353 (563)
+.+++.|+.+ ..+.+||.....-..+..... .-..+.. ++..++.|+.+ ..+.+||+.+.+|...-
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~ 93 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVA 93 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEEEC
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCceeeCC
Confidence 3455555543 356777765543333221111 1111222 55566677654 35889999988876643
Q ss_pred eecccC-eEEEecCCCceEEEEeCCC-----eEEEEEcCCCcc--eeeecCCCcceeEEEECCCCCEEEEEeCC------
Q 008496 354 EFHSGP-TLDVDWRNNVSFATSSTDN-----MIYVCKIGENRP--IKTFAGHQGEVNCVKWDPTGSLLASCSDD------ 419 (563)
Q Consensus 354 ~~~~~~-~~~~~~~~~~~~~~~~~d~-----~i~~~~~~~~~~--~~~~~~h~~~i~~~~~~~~~~~las~s~d------ 419 (563)
...... -..+...++..++.++.++ .+.+++..+..= +..+........++.+ ++++++.|+.+
T Consensus 94 ~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~ 171 (302)
T 2xn4_A 94 NMRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQC 171 (302)
T ss_dssp CCSSCCBSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTTTEE
T ss_pred CCCccccceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--CCEEEEEeCCCCCCCcc
Confidence 221111 1112223455556655432 466677655431 1111111111222223 56777777643
Q ss_pred -CcEEEEeCCCCceeee--ecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCC-----CeEEEEeCCCCeEEE--EecC
Q 008496 420 -VTAKIWNMKQDKYVHD--LREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD-----STVKLWDVELGKLLY--SLNG 489 (563)
Q Consensus 420 -g~i~iwd~~~~~~~~~--~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~d-----g~i~iwd~~~~~~~~--~~~~ 489 (563)
..+.+||..+...... +.........+.+ + + .+++.|+.+ ..+.+||+.+.+-.. .+..
T Consensus 172 ~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~--------~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~ 240 (302)
T 2xn4_A 172 LSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--N--------N-LLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNM 240 (302)
T ss_dssp CCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--T--------T-EEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSS
T ss_pred ccEEEEEeCCCCcEEECCCCccccccccEEEE--C--------C-EEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCC
Confidence 3477888877654321 1110001111111 1 1 245555554 368889988764322 1111
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCC-----cEEEEecCCCe
Q 008496 490 HREPVYSLAFSPTGEYLASGSLDK-----SMHIWSLKEGK 524 (563)
Q Consensus 490 h~~~i~~l~~spdg~~lasgs~dg-----~v~iw~~~~~~ 524 (563)
.......+.+ ++++++.|+.++ .|.+||+.+.+
T Consensus 241 ~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 241 CRRNAGVCAV--NGLLYVVGGDDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp CCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred ccccCeEEEE--CCEEEEECCcCCCcccccEEEEcCCCCe
Confidence 1111122222 677777777653 48888887654
No 315
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=95.79 E-value=0.55 Score=44.03 Aligned_cols=209 Identities=11% Similarity=0.107 Sum_probs=100.6
Q ss_pred CcEEEEECCCCceeEEeeeccc-CeEEEecCCCceEEEEeCC-----CeEEEEEcCCCc---c--eeeecCCCcceeEEE
Q 008496 337 KTAIVWDVKTEEWKQQFEFHSG-PTLDVDWRNNVSFATSSTD-----NMIYVCKIGENR---P--IKTFAGHQGEVNCVK 405 (563)
Q Consensus 337 ~~v~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d-----~~i~~~~~~~~~---~--~~~~~~h~~~i~~~~ 405 (563)
..+.+||+.+.+|...-..... ....+...++..++.++.+ ..+++++..+.. - +..+........++.
T Consensus 31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~ 110 (301)
T 2vpj_A 31 DVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATT 110 (301)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEE
T ss_pred eEEEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEE
Confidence 3688899988877653221111 0112222345556666543 357888876654 1 111111111122233
Q ss_pred ECCCCCEEEEEeCCC-----cEEEEeCCCCceeee--ecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCC-----CeE
Q 008496 406 WDPTGSLLASCSDDV-----TAKIWNMKQDKYVHD--LREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD-----STV 473 (563)
Q Consensus 406 ~~~~~~~las~s~dg-----~i~iwd~~~~~~~~~--~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~d-----g~i 473 (563)
+ ++++++.|+.++ .+.+||..+...... +......-..+.+ ++ . +++.|+.+ ..+
T Consensus 111 ~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~--------~-iyv~GG~~~~~~~~~~ 177 (301)
T 2vpj_A 111 L--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SG--------V-IYCLGGYDGLNILNSV 177 (301)
T ss_dssp E--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TT--------E-EEEECCBCSSCBCCCE
T ss_pred E--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CC--------E-EEEECCCCCCcccceE
Confidence 3 577777776543 577888776654321 1110000111111 11 2 44455543 458
Q ss_pred EEEeCCCCeEEEE--ecCCCCCEEEEEEcCCCCEEEEEeCC-----CcEEEEecCCCeeEEEEecC---CCEEEEEEcCC
Q 008496 474 KLWDVELGKLLYS--LNGHREPVYSLAFSPTGEYLASGSLD-----KSMHIWSLKEGKIVKTYTGN---GGIFEVCWNKE 543 (563)
Q Consensus 474 ~iwd~~~~~~~~~--~~~h~~~i~~l~~spdg~~lasgs~d-----g~v~iw~~~~~~~~~~~~~~---~~i~~l~w~~~ 543 (563)
.+||+.+.+-... +.........+.+ ++++++.|+.+ ..|.+||+.+.+-...-... .....+.. +
T Consensus 178 ~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~ 253 (301)
T 2vpj_A 178 EKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL--R 253 (301)
T ss_dssp EEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--T
T ss_pred EEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEE--C
Confidence 8889877643221 1111111122333 56777777764 46899999876533221111 11112222 5
Q ss_pred CCEEEEEECC-----CeEEEEEee
Q 008496 544 GDKIAACFAN-----HTVCVLDFR 562 (563)
Q Consensus 544 g~~la~~~~~-----~~v~v~~~~ 562 (563)
++.+++|+.+ ..+.+||.+
T Consensus 254 ~~i~v~GG~~~~~~~~~v~~yd~~ 277 (301)
T 2vpj_A 254 GRLYAIAGYDGNSLLSSIECYDPI 277 (301)
T ss_dssp TEEEEECCBCSSSBEEEEEEEETT
T ss_pred CEEEEEcCcCCCcccccEEEEcCC
Confidence 6666666544 346667653
No 316
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=95.69 E-value=1.5 Score=41.46 Aligned_cols=219 Identities=11% Similarity=0.111 Sum_probs=102.2
Q ss_pred EEEEEeCCCeEEEEEcCCceeEe--eccC-CCCEEEEEeCCCCCEEEEeeC----C-------CcEEEEECCCCceeEEe
Q 008496 288 LLATGSYDGQARIWSTNGDLKCT--LSKH-KGPIFSLKWNKKGDYLLTGSC----D-------KTAIVWDVKTEEWKQQF 353 (563)
Q Consensus 288 ~l~sg~~dg~i~vw~~~~~~~~~--~~~h-~~~V~~l~~~~~~~~l~s~s~----D-------~~v~iwd~~~~~~~~~~ 353 (563)
+++.|+ ..+.+||.....-.. +... ...-.++. ..++..++.|+. + ..+.+||+.+.+|...-
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~ 83 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLV-TKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMP 83 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEE-CTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECC
T ss_pred EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEE-EECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECC
Confidence 344555 568888876543221 2111 11122232 346677777763 1 12778899988875532
Q ss_pred eecccC-eEEEecCCCceEEEEeCC--------CeEEEEEcCCCc--ceeeecCCCcceeEEEECCCCCEEEEEeC-C--
Q 008496 354 EFHSGP-TLDVDWRNNVSFATSSTD--------NMIYVCKIGENR--PIKTFAGHQGEVNCVKWDPTGSLLASCSD-D-- 419 (563)
Q Consensus 354 ~~~~~~-~~~~~~~~~~~~~~~~~d--------~~i~~~~~~~~~--~~~~~~~h~~~i~~~~~~~~~~~las~s~-d-- 419 (563)
...... -..+...++..++.++.+ +.+++++..+.+ .+..+........++. .++++++.|+. +
T Consensus 84 ~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~ 161 (315)
T 4asc_A 84 PLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS--HMDLVYVIGGKGSDR 161 (315)
T ss_dssp CBSSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCTTS
T ss_pred CCCcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE--ECCEEEEEeCCCCCC
Confidence 211100 011222345555555521 347777776543 1111111111112222 35677777775 2
Q ss_pred ---CcEEEEeCCCCceeee--ecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCC-----eEEEEeCCCCeEEEE--e
Q 008496 420 ---VTAKIWNMKQDKYVHD--LREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDS-----TVKLWDVELGKLLYS--L 487 (563)
Q Consensus 420 ---g~i~iwd~~~~~~~~~--~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg-----~i~iwd~~~~~~~~~--~ 487 (563)
..+.+||..+...... +.........+.+ + +. +++.|+.++ .+.+||+.+.+=... +
T Consensus 162 ~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~--------~~-iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~ 230 (315)
T 4asc_A 162 KCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--D--------GR-IIVAAGVTDTGLTSSAEVYSITDNKWAPFEAF 230 (315)
T ss_dssp CBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--T--------TE-EEEEEEECSSSEEEEEEEEETTTTEEEEECCC
T ss_pred cccceEEEEeCCCCeEEECCCCCCchhceEEEEE--C--------CE-EEEEeccCCCCccceEEEEECCCCeEEECCCC
Confidence 3578888877654321 1100000111111 1 12 445555443 588888887643221 1
Q ss_pred cCCCCCEEEEEEcCCCCEEEEEeCCC--------------cEEEEecCCCe
Q 008496 488 NGHREPVYSLAFSPTGEYLASGSLDK--------------SMHIWSLKEGK 524 (563)
Q Consensus 488 ~~h~~~i~~l~~spdg~~lasgs~dg--------------~v~iw~~~~~~ 524 (563)
.........+.+ ++++++.|+.++ .|.+||+.+.+
T Consensus 231 p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~ 279 (315)
T 4asc_A 231 PQERSSLSLVSL--VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKK 279 (315)
T ss_dssp SSCCBSCEEEEE--TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTE
T ss_pred CCcccceeEEEE--CCEEEEECCccccCcCCccccccccCcEEEecCCCCh
Confidence 111111222333 567777777642 36778877654
No 317
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=95.68 E-value=1 Score=42.33 Aligned_cols=222 Identities=9% Similarity=0.081 Sum_probs=108.5
Q ss_pred CCEEEEEeCC--CeEEEEEcCCceeEeecc---CCCCEEEEEeCCCCCEEEEeeCC----CcEEEEECCCCceeEEeeec
Q 008496 286 GTLLATGSYD--GQARIWSTNGDLKCTLSK---HKGPIFSLKWNKKGDYLLTGSCD----KTAIVWDVKTEEWKQQFEFH 356 (563)
Q Consensus 286 g~~l~sg~~d--g~i~vw~~~~~~~~~~~~---h~~~V~~l~~~~~~~~l~s~s~D----~~v~iwd~~~~~~~~~~~~~ 356 (563)
+.+++.|+.+ ..+.+||.....-..+.. ....-..+. -++..++.|+.+ ..+.+||+.+.+|...-...
T Consensus 12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p 89 (306)
T 3ii7_A 12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPP 89 (306)
T ss_dssp CEEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCS
T ss_pred ceEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCC
Confidence 3455666653 567888876543332221 111111222 245566677654 57889999998876543222
Q ss_pred ccC-eEEEecCCCceEEEEeCC------CeEEEEEcCCCcc--eeeecCCCcceeEEEECCCCCEEEEEeC---------
Q 008496 357 SGP-TLDVDWRNNVSFATSSTD------NMIYVCKIGENRP--IKTFAGHQGEVNCVKWDPTGSLLASCSD--------- 418 (563)
Q Consensus 357 ~~~-~~~~~~~~~~~~~~~~~d------~~i~~~~~~~~~~--~~~~~~h~~~i~~~~~~~~~~~las~s~--------- 418 (563)
... -..+...++..++.++.+ ..+.+++..+..= +..+........++.+ ++++++.|+.
T Consensus 90 ~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~ 167 (306)
T 3ii7_A 90 TPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA--NGLIYVCGGSLGNNVSGRV 167 (306)
T ss_dssp SCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEESCTTTCEE
T ss_pred ccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE--CCEEEEECCCCCCCCcccc
Confidence 111 111222345556666544 3577777765431 1111111111122222 5677777764
Q ss_pred CCcEEEEeCCCCceeee--ecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCC-----CeEEEEeCCCCeEEE--EecC
Q 008496 419 DVTAKIWNMKQDKYVHD--LREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD-----STVKLWDVELGKLLY--SLNG 489 (563)
Q Consensus 419 dg~i~iwd~~~~~~~~~--~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~d-----g~i~iwd~~~~~~~~--~~~~ 489 (563)
-..+.+||..+...... +......-..+.. + +. +++.|+.+ ..+.+||+.+.+=.. .+..
T Consensus 168 ~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~--------~~-i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~ 236 (306)
T 3ii7_A 168 LNSCEVYDPATETWTELCPMIEARKNHGLVFV--K--------DK-IFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPW 236 (306)
T ss_dssp CCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--T--------TE-EEEECCEETTEEBCCEEEEETTTTEEEECCCCSC
T ss_pred cceEEEeCCCCCeEEECCCccchhhcceEEEE--C--------CE-EEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCC
Confidence 23477888877654321 1100000111111 1 12 44445433 358888887754211 1111
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCC-----CcEEEEecCCCe
Q 008496 490 HREPVYSLAFSPTGEYLASGSLD-----KSMHIWSLKEGK 524 (563)
Q Consensus 490 h~~~i~~l~~spdg~~lasgs~d-----g~v~iw~~~~~~ 524 (563)
.......+.+ ++++++.|+.+ ..|.+||+.+.+
T Consensus 237 ~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 237 KGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp CBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred CccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence 1122233333 67788888854 468889988754
No 318
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=95.62 E-value=1.1 Score=45.05 Aligned_cols=109 Identities=10% Similarity=0.126 Sum_probs=60.6
Q ss_pred cceeEEEECCCCCEEEEEeCCCcEEEEeCCCCce--eeeecc------cCCCEEEEEEccCCCCCCCCCCcEEEEEEeC-
Q 008496 399 GEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY--VHDLRE------HSKEIYTIRWSPTGSGTNNPNQQLILASASF- 469 (563)
Q Consensus 399 ~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~--~~~~~~------~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~- 469 (563)
.....++|.|+|+++++-...+.|++++..++.. +..+.. .......|+|+|+-. .+..++++....
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~----~~g~lYv~~s~~~ 102 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFK----NNPYIYISGTFKN 102 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTT----TSCEEEEEEEEEC
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcC----cCCEEEEEEeccc
Confidence 3466899999999887665545788887654432 222221 235577899998531 112234433220
Q ss_pred ----------CCeEEEEeCCCC-------eEEEE-ecC-CCCCEEEEEEcCCCCEEEEEeC
Q 008496 470 ----------DSTVKLWDVELG-------KLLYS-LNG-HREPVYSLAFSPTGEYLASGSL 511 (563)
Q Consensus 470 ----------dg~i~iwd~~~~-------~~~~~-~~~-h~~~i~~l~~spdg~~lasgs~ 511 (563)
...|.-|+...+ +.+.. +.. .......|+|.|||.++++.+.
T Consensus 103 ~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 103 PKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp TTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred cCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 124444443221 22222 221 1124689999999988776553
No 319
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=95.19 E-value=5.5 Score=45.05 Aligned_cols=306 Identities=12% Similarity=0.093 Sum_probs=146.6
Q ss_pred CCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEc
Q 008496 224 SPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWST 303 (563)
Q Consensus 224 sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~ 303 (563)
..++..++-+..+|.+.+-.+....... ....+..+.+..+.. ...-+++++-.+| +|+.|+..|.-.+|..
T Consensus 283 ~~~~~~~LL~~~~G~l~~l~l~~d~~~~--~~~~V~~l~i~~~~~-----~~~~ssl~~l~~g-~lFvgS~~Gds~l~~~ 354 (1158)
T 3ei3_A 283 DPNGSRYLLGDMEGRLFMLLLEKEEQMD--GTVTLKDLRVELLGE-----TSIAECLTYLDNG-VVFVGSRLGDSQLVKL 354 (1158)
T ss_dssp STTSSEEEEEETTCEEEEEEEEEEC-------CEEEEEEEEEEEE-----CSCCSEEEECSTT-EEEEECSSSCEEEEEE
T ss_pred ecCCCEEEEEeCCCCEEEEEEEEcCCcc--CceeEEEEEEEEcCC-----ccCccEEEEECCC-EEEEEEecCCcEEEEE
Confidence 3455666777788888766553210000 000111122222211 1123566666555 7888999888888875
Q ss_pred CCc---------eeEeeccCCCCEEEEEeCCC----CCEEEEeeC---CCcEEEEECCCCcee---EEeeecc-cCeEEE
Q 008496 304 NGD---------LKCTLSKHKGPIFSLKWNKK----GDYLLTGSC---DKTAIVWDVKTEEWK---QQFEFHS-GPTLDV 363 (563)
Q Consensus 304 ~~~---------~~~~~~~h~~~V~~l~~~~~----~~~l~s~s~---D~~v~iwd~~~~~~~---~~~~~~~-~~~~~~ 363 (563)
... ...++ ..-+||..++.-.. ...|++++. +|++++.. .+--. ..++... ..+..+
T Consensus 355 ~~~~~~~~~~~~~~~~~-~N~~PI~D~~v~d~~~~~~~~i~~~sG~g~~gsL~~lr--~Gi~~~~~~~~~l~gv~~iWtl 431 (1158)
T 3ei3_A 355 NVDSNEQGSYVVAMETF-TNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIR--NGIGIHEHASIDLPGIKGLWPL 431 (1158)
T ss_dssp CSSCCTTSCCEEEEEEE-CCCCSEEEEEEECTTSSSCCEEEEEECCGGGCEEEEEE--ESBCEEEEEEECCCSCCEEEEE
T ss_pred ecCCCCccceEEeEeee-cCcCCceeEEEEccCCCCCCeEEEEECcCCCCeEEEEe--cCCCEEEEEeecCCCccEEEEE
Confidence 421 12223 24478888876432 246665543 57787763 22111 1111110 111122
Q ss_pred ecC----CCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeC---------CCcEEEEeCCCC
Q 008496 364 DWR----NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD---------DVTAKIWNMKQD 430 (563)
Q Consensus 364 ~~~----~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~---------dg~i~iwd~~~~ 430 (563)
... .+..++.+..+.+ .++.+... .+.... ...|..+...|+++.- ...|++.+....
T Consensus 432 ~~~~~~~~~~yLvlS~~~~T-~Vl~i~~e-~veev~-------~~gf~~~~~TL~~~~l~~~~ivQVt~~~Irli~~~~~ 502 (1158)
T 3ei3_A 432 RSDPNRETDDTLVLSFVGQT-RVLMLNGE-EVEETE-------LMGFVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPK 502 (1158)
T ss_dssp CCCSSCSSCCEEEEEETTEE-EEEEEETT-EEEEEC-------CTTCCSSSCEEEEEEETTTEEEEEESSCEEEEESSSC
T ss_pred eecCCCCCCCEEEEECCCCe-EEEEEeCC-cccccc-------cccccCCCCcEEEEEcCCCeEEEEecCEEEEEECCCC
Confidence 111 1223333333333 34443211 111110 0012222333333321 123555555443
Q ss_pred ceeeeecccC-CCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEE-ecCCCCCEEEEEEcCC------
Q 008496 431 KYVHDLREHS-KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYS-LNGHREPVYSLAFSPT------ 502 (563)
Q Consensus 431 ~~~~~~~~~~-~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~-~~~h~~~i~~l~~spd------ 502 (563)
..+..+.... ..|...+... . .++.++ .+.|.++.+..+..... -..-...|.|+++.|.
T Consensus 503 ~~~~~w~~p~~~~I~~As~n~----------~-~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~ 570 (1158)
T 3ei3_A 503 ALVSEWKEPQAKNISVASCNS----------S-QVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGL 570 (1158)
T ss_dssp CEEEEECCTTCCCCCEEEECS----------S-EEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTC
T ss_pred eEEEEEECCCCCEEEEEEeCC----------C-EEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCccc
Confidence 3343333221 2233333221 1 233334 57888887766543211 1113457999999864
Q ss_pred CCEEEEEeC-CCcEEEEecCCCeeEEEEec--CCCEEEEEEcC--CCCEEEEEECCCeEEEEEe
Q 008496 503 GEYLASGSL-DKSMHIWSLKEGKIVKTYTG--NGGIFEVCWNK--EGDKIAACFANHTVCVLDF 561 (563)
Q Consensus 503 g~~lasgs~-dg~v~iw~~~~~~~~~~~~~--~~~i~~l~w~~--~g~~la~~~~~~~v~v~~~ 561 (563)
+.++|.|.. |++|+|+++.+.+.+....- ...+.+++... ..-+|.+|..||.+..+.+
T Consensus 571 s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~ 634 (1158)
T 3ei3_A 571 SPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGL 634 (1158)
T ss_dssp CSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEE
T ss_pred ccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEE
Confidence 379999997 99999999988766544332 22333443322 2347888999998765554
No 320
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=95.10 E-value=1.4 Score=41.33 Aligned_cols=217 Identities=6% Similarity=-0.006 Sum_probs=103.9
Q ss_pred EEEEeeC--CCcEEEEECCCCceeEEeeecccC-eEEEecCCCceEEEEeCC----CeEEEEEcCCCcc--eeeecCCCc
Q 008496 329 YLLTGSC--DKTAIVWDVKTEEWKQQFEFHSGP-TLDVDWRNNVSFATSSTD----NMIYVCKIGENRP--IKTFAGHQG 399 (563)
Q Consensus 329 ~l~s~s~--D~~v~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d----~~i~~~~~~~~~~--~~~~~~h~~ 399 (563)
.++.|+. ...+.+||+.+.+|...-...... -..+...++..++.++.+ ..+++++..+..- +..+.....
T Consensus 14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~ 93 (306)
T 3ii7_A 14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRD 93 (306)
T ss_dssp EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCB
T ss_pred EEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCcccc
Confidence 3445554 357899999998876532211110 111222345556666544 5677777765531 111111111
Q ss_pred ceeEEEECCCCCEEEEEeCC------CcEEEEeCCCCceeee--ecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeC--
Q 008496 400 EVNCVKWDPTGSLLASCSDD------VTAKIWNMKQDKYVHD--LREHSKEIYTIRWSPTGSGTNNPNQQLILASASF-- 469 (563)
Q Consensus 400 ~i~~~~~~~~~~~las~s~d------g~i~iwd~~~~~~~~~--~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~-- 469 (563)
...++.+ ++++++.|+.+ ..+.+||..+...... +......-..+.+ + +. +++.|+.
T Consensus 94 ~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~--------~~-iyv~GG~~~ 160 (306)
T 3ii7_A 94 SLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA--N--------GL-IYVCGGSLG 160 (306)
T ss_dssp SCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--T--------TE-EEEECCEES
T ss_pred ceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE--C--------CE-EEEECCCCC
Confidence 1222233 57777777765 3578888877654321 1100000111111 1 12 3344432
Q ss_pred -------CCeEEEEeCCCCeEEEE--ecCCCCCEEEEEEcCCCCEEEEEeCC-----CcEEEEecCCCeeEEE--Eec-C
Q 008496 470 -------DSTVKLWDVELGKLLYS--LNGHREPVYSLAFSPTGEYLASGSLD-----KSMHIWSLKEGKIVKT--YTG-N 532 (563)
Q Consensus 470 -------dg~i~iwd~~~~~~~~~--~~~h~~~i~~l~~spdg~~lasgs~d-----g~v~iw~~~~~~~~~~--~~~-~ 532 (563)
-..+.+||+.+.+=... +......-..+.+ ++++++.|+.+ ..+.+||+.+.+-... ... .
T Consensus 161 ~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r 238 (306)
T 3ii7_A 161 NNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKG 238 (306)
T ss_dssp CTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCB
T ss_pred CCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCc
Confidence 34588889887642211 1111111122223 66777777654 3688999987642221 111 0
Q ss_pred CCEEEEEEcCCCCEEEEEECC-----CeEEEEEee
Q 008496 533 GGIFEVCWNKEGDKIAACFAN-----HTVCVLDFR 562 (563)
Q Consensus 533 ~~i~~l~w~~~g~~la~~~~~-----~~v~v~~~~ 562 (563)
.....+.. +++.+++|+.+ ..+.+||..
T Consensus 239 ~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~ 271 (306)
T 3ii7_A 239 VTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTE 271 (306)
T ss_dssp SCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETT
T ss_pred cceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCC
Confidence 11122222 56666776533 356777753
No 321
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=95.02 E-value=2.3 Score=40.56 Aligned_cols=188 Identities=13% Similarity=0.140 Sum_probs=102.8
Q ss_pred CEEEEEeCCCeEEEEEc-CCceeEeeccC-CCCEEEEEeC--CCCCEEEEe--eCCCcEEEEECCCCceeEEeeec----
Q 008496 287 TLLATGSYDGQARIWST-NGDLKCTLSKH-KGPIFSLKWN--KKGDYLLTG--SCDKTAIVWDVKTEEWKQQFEFH---- 356 (563)
Q Consensus 287 ~~l~sg~~dg~i~vw~~-~~~~~~~~~~h-~~~V~~l~~~--~~~~~l~s~--s~D~~v~iwd~~~~~~~~~~~~~---- 356 (563)
.+++.++.||.|.-.|. +|+.+..+... ..++....-. +.+..++.+ +.||.+..+|..++.....+...
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 46888999999999995 57666665443 1333332211 112234433 68999999999888655433321
Q ss_pred ccCeEE-----E-e---cCCCceEEEEeCCCeEEEEEcCCCcceeeecCCC--cc-----eeEEEEC-----CCCCEEEE
Q 008496 357 SGPTLD-----V-D---WRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQ--GE-----VNCVKWD-----PTGSLLAS 415 (563)
Q Consensus 357 ~~~~~~-----~-~---~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~--~~-----i~~~~~~-----~~~~~las 415 (563)
..|... + + -..+..+.+++.++.++..+..+++.+..+.... +. ..|.... -.+..|+.
T Consensus 91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~i 170 (339)
T 2be1_A 91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVI 170 (339)
T ss_dssp TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEEE
T ss_pred ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEEE
Confidence 112211 0 0 0145567788889999999999998888775321 10 1122211 12355667
Q ss_pred EeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCC-------CCCCCCcEEEEEEeCCCeEEEEeCCCCeEEE
Q 008496 416 CSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSG-------TNNPNQQLILASASFDSTVKLWDVELGKLLY 485 (563)
Q Consensus 416 ~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~-------~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 485 (563)
++.+..+.+.+ ++++ +-.+ .--.|.+.... ....+.. + +.++.||.|.-+|..+|+.++
T Consensus 171 g~~~y~v~~~~-~sG~-~W~~-------~~s~~~~~~~~~~~~~~~~~s~Dg~-~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 171 GKTIFELGIHS-YDGA-SYNV-------TYSTWQQNVLDVPLALQNTFSKDGM-C-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp EEEEEECEECC-TTSC-CCCC-------EEEEEECCTTTHHHHTTCSSCSSSC-C-EEEETTTEEEEECSTTCCEEE
T ss_pred ecceEEEEEEC-CCCC-eEEE-------ecccccccccccccccccccccCCc-E-EEECCCCEEEEEECCCCcEEE
Confidence 77777666655 3332 1111 11123222110 0001122 2 347899999999999999887
No 322
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=95.00 E-value=1.7 Score=49.36 Aligned_cols=193 Identities=13% Similarity=0.210 Sum_probs=118.1
Q ss_pred eCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcC-CCcceeeecCC----
Q 008496 323 WNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIG-ENRPIKTFAGH---- 397 (563)
Q Consensus 323 ~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~-~~~~~~~~~~h---- 397 (563)
.||..+.++-= ...++.|+|+.+...+..+.+.. ++.=-.|.+...++.. ++..|+.|++. ...|++.|..|
T Consensus 73 MnP~~~iiALr-ag~~lQiFnl~~k~klks~~~~e-~VvfWkWis~~~l~lV-T~~aVyHW~~~~~s~P~k~fdR~~~L~ 149 (1630)
T 1xi4_A 73 MNPASKVIALK-AGKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLNTVALV-TDNAVYHWSMEGESQPVKMFDRHSSLA 149 (1630)
T ss_pred cCCCcceEEEe-cCCeEEEeehHHhhhhcccccCC-CceEEEecCCCeeEEE-cCCeEEEeccCCCCccHHHHhcchhcc
Confidence 46666544433 36799999999888777776644 4555678777766554 35679999996 45677777766
Q ss_pred CcceeEEEECCCCCEEEEEe-------CCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeC-
Q 008496 398 QGEVNCVKWDPTGSLLASCS-------DDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASF- 469 (563)
Q Consensus 398 ~~~i~~~~~~~~~~~las~s-------~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~- 469 (563)
...|..-..+++.++++..+ -.|.+.+|+...+. ...+.+|......+.. +|. +....+++-+..
T Consensus 150 ~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~-sQ~iegha~~F~~~~~--~~~----~~~~~l~~f~~~~ 222 (1630)
T 1xi4_A 150 GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKM--EGN----AEESTLFCFAVRG 222 (1630)
T ss_pred cCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc-chhhhHhHhhhheecc--CCC----CCCceEEEEEEec
Confidence 34576777889999876433 34677888865443 2345566554433332 111 111123332222
Q ss_pred --CCeEEEEeCCCC---eEEEEe-------cC---CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeE
Q 008496 470 --DSTVKLWDVELG---KLLYSL-------NG---HREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIV 526 (563)
Q Consensus 470 --dg~i~iwd~~~~---~~~~~~-------~~---h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~ 526 (563)
.+.++|-++... ...+.. .. ..-| .++..|+.-..+..-+.-|.|++||+.+|.++
T Consensus 223 ~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfp-v~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i 293 (1630)
T 1xi4_A 223 QAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFP-VAMQISEKHDVVFLITKYGYIHLYDLETGTCI 293 (1630)
T ss_pred CCCceEEEEecCCCccCCCCCccccccccCCcccccCcc-eEEEeccccCEEEEEecCceEEEEecccchhh
Confidence 267888877432 111110 00 1122 35666666667777788999999999999865
No 323
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=94.97 E-value=1.6 Score=41.00 Aligned_cols=224 Identities=13% Similarity=0.136 Sum_probs=107.0
Q ss_pred CCCCEEEEEeCC----CeEEEEEcCCceeEeeccCCC---CEEEEEeCCCCCEEEEeeC----C-----CcEEEEECCCC
Q 008496 284 GEGTLLATGSYD----GQARIWSTNGDLKCTLSKHKG---PIFSLKWNKKGDYLLTGSC----D-----KTAIVWDVKTE 347 (563)
Q Consensus 284 ~~g~~l~sg~~d----g~i~vw~~~~~~~~~~~~h~~---~V~~l~~~~~~~~l~s~s~----D-----~~v~iwd~~~~ 347 (563)
-++.+++.|+.+ ..+.+||.....-..+..... .-..+.. ++..++.|+. + ..+.+||+.+.
T Consensus 23 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~ 100 (308)
T 1zgk_A 23 VGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTN 100 (308)
T ss_dssp CCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTT
T ss_pred CCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEE--CCEEEEECCCcCCCCCCeecceEEEECCCCC
Confidence 356677777743 367788876543333321111 1111222 4556666665 2 46889999988
Q ss_pred ceeEEeeecccC-eEEEecCCCceEEEEeCC-----CeEEEEEcCCCcc--eeeecCCCcceeEEEECCCCCEEEEEeCC
Q 008496 348 EWKQQFEFHSGP-TLDVDWRNNVSFATSSTD-----NMIYVCKIGENRP--IKTFAGHQGEVNCVKWDPTGSLLASCSDD 419 (563)
Q Consensus 348 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d-----~~i~~~~~~~~~~--~~~~~~h~~~i~~~~~~~~~~~las~s~d 419 (563)
+|...-...... -..+...++..++.++.+ ..+.+++..+..- +..+........++.+ ++++++.|+.+
T Consensus 101 ~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~ 178 (308)
T 1zgk_A 101 QWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFD 178 (308)
T ss_dssp EEEECCCCSSCCBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBC
T ss_pred eEeECCCCCcCccccEEEEECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCCC
Confidence 876542221110 011112244455555432 3467777655431 1111111111222333 57777777754
Q ss_pred -----CcEEEEeCCCCceeee--ecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCC-----CeEEEEeCCCCeEEE--
Q 008496 420 -----VTAKIWNMKQDKYVHD--LREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD-----STVKLWDVELGKLLY-- 485 (563)
Q Consensus 420 -----g~i~iwd~~~~~~~~~--~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~d-----g~i~iwd~~~~~~~~-- 485 (563)
..+.+||+.+...... +.........+.+ + + .+++.|+.+ ..+.+||+.+.+-..
T Consensus 179 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~--------~-~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~ 247 (308)
T 1zgk_A 179 GTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--H--------N-CIYAAGGYDGQDQLNSVERYDVETETWTFVA 247 (308)
T ss_dssp SSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--T--------T-EEEEECCBCSSSBCCCEEEEETTTTEEEECC
T ss_pred CCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--C--------C-EEEEEeCCCCCCccceEEEEeCCCCcEEECC
Confidence 3578888876654321 1100001111111 1 1 245555544 468889988764321
Q ss_pred EecCCCCCEEEEEEcCCCCEEEEEeCC-----CcEEEEecCCCe
Q 008496 486 SLNGHREPVYSLAFSPTGEYLASGSLD-----KSMHIWSLKEGK 524 (563)
Q Consensus 486 ~~~~h~~~i~~l~~spdg~~lasgs~d-----g~v~iw~~~~~~ 524 (563)
.+.........+.+ ++++++.|+.+ ..|.+||+.+.+
T Consensus 248 ~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 289 (308)
T 1zgk_A 248 PMKHRRSALGITVH--QGRIYVLGGYDGHTFLDSVECYDPDTDT 289 (308)
T ss_dssp CCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred CCCCCccceEEEEE--CCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence 11111111122222 66777777754 357788887654
No 324
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=94.93 E-value=1.4 Score=41.18 Aligned_cols=209 Identities=15% Similarity=0.170 Sum_probs=97.7
Q ss_pred CcEEEEECCCCceeEEeeecccC-eEEEecCCCceEEEEeCC-----CeEEEEEcCCCcc--eeeecCCCcceeEEEECC
Q 008496 337 KTAIVWDVKTEEWKQQFEFHSGP-TLDVDWRNNVSFATSSTD-----NMIYVCKIGENRP--IKTFAGHQGEVNCVKWDP 408 (563)
Q Consensus 337 ~~v~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d-----~~i~~~~~~~~~~--~~~~~~h~~~i~~~~~~~ 408 (563)
..+.+||+.+..+...-...... -..+...++..++.++.+ ..+++++..+..- +..+........++.+
T Consensus 30 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-- 107 (302)
T 2xn4_A 30 RSVECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL-- 107 (302)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--
T ss_pred CcEEEEcCcCCcEeEcccCCcccccceEEEECCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE--
Confidence 35788898888776532211110 011222245555665533 3467777765431 1111111111222233
Q ss_pred CCCEEEEEeCCC-----cEEEEeCCCCceeee--ecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCC-------CeEE
Q 008496 409 TGSLLASCSDDV-----TAKIWNMKQDKYVHD--LREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD-------STVK 474 (563)
Q Consensus 409 ~~~~las~s~dg-----~i~iwd~~~~~~~~~--~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~d-------g~i~ 474 (563)
++++++.|+.++ .+.+||..+...... +.........+.+ + +. +++.|+.+ ..+.
T Consensus 108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~--------~~-iyv~GG~~~~~~~~~~~~~ 176 (302)
T 2xn4_A 108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--G--------GL-LYAVGGYDVASRQCLSTVE 176 (302)
T ss_dssp TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--T--------TE-EEEECCEETTTTEECCCEE
T ss_pred CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--C--------CE-EEEEeCCCCCCCccccEEE
Confidence 567777777553 467788776654321 1110000111111 1 12 34444432 3588
Q ss_pred EEeCCCCeEEE--EecCCCCCEEEEEEcCCCCEEEEEeCC-----CcEEEEecCCCeeEEEEecC---CCEEEEEEcCCC
Q 008496 475 LWDVELGKLLY--SLNGHREPVYSLAFSPTGEYLASGSLD-----KSMHIWSLKEGKIVKTYTGN---GGIFEVCWNKEG 544 (563)
Q Consensus 475 iwd~~~~~~~~--~~~~h~~~i~~l~~spdg~~lasgs~d-----g~v~iw~~~~~~~~~~~~~~---~~i~~l~w~~~g 544 (563)
+||+.+.+=.. .+.........+.+ ++++++.|+.+ ..+.+||+.+.+-...-... .....+. -++
T Consensus 177 ~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~ 252 (302)
T 2xn4_A 177 CYNATTNEWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCA--VNG 252 (302)
T ss_dssp EEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETT
T ss_pred EEeCCCCcEEECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEE--ECC
Confidence 88887664322 12111111222333 67777888764 36899999876532221111 0111122 256
Q ss_pred CEEEEEECCC-----eEEEEEee
Q 008496 545 DKIAACFANH-----TVCVLDFR 562 (563)
Q Consensus 545 ~~la~~~~~~-----~v~v~~~~ 562 (563)
+.+++|+.++ .+.+||..
T Consensus 253 ~i~v~GG~~~~~~~~~v~~yd~~ 275 (302)
T 2xn4_A 253 LLYVVGGDDGSCNLASVEYYNPT 275 (302)
T ss_dssp EEEEECCBCSSSBCCCEEEEETT
T ss_pred EEEEECCcCCCcccccEEEEcCC
Confidence 6666665443 47777753
No 325
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=94.86 E-value=3 Score=40.21 Aligned_cols=54 Identities=19% Similarity=0.321 Sum_probs=32.9
Q ss_pred ceeEEEECC-------CCCEEEEEeCCCcEEEEeCCCCceeee--e-cccCCCEEEEEEccCCC
Q 008496 400 EVNCVKWDP-------TGSLLASCSDDVTAKIWNMKQDKYVHD--L-REHSKEIYTIRWSPTGS 453 (563)
Q Consensus 400 ~i~~~~~~~-------~~~~las~s~dg~i~iwd~~~~~~~~~--~-~~~~~~i~~~~~~p~~~ 453 (563)
.+..+.|.. +|.++++.-..+.|...++..++.+.. + ......+..+++.|+|.
T Consensus 272 ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~ 335 (353)
T 2g8s_A 272 AVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGY 335 (353)
T ss_dssp CEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSC
T ss_pred CcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCc
Confidence 455677753 467777766677777777665543322 2 12234678888888774
No 326
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=94.84 E-value=1.4 Score=40.96 Aligned_cols=220 Identities=14% Similarity=0.049 Sum_probs=109.3
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEEcC--CceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEe
Q 008496 276 DVTTLDWNGEGTLLATGSYDGQARIWSTN--GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF 353 (563)
Q Consensus 276 ~V~~l~~s~~g~~l~sg~~dg~i~vw~~~--~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~ 353 (563)
.|..++-..... ++. . ||.+..|-.+ +++-.. ......|..++.... +.+.-. ||.|..|-..........
T Consensus 25 ~i~~ia~G~~h~-~~l-~-~G~v~~wG~n~~Gqlg~p-~~~~~~i~~ia~G~~--hs~~l~-~G~v~~wG~n~~Gqlg~P 97 (282)
T 3qhy_B 25 GVDAIAGGYFHG-LAL-K-GGKVLGWGANLNGQLTMP-AATQSGVDAIAAGNY--HSLALK-DGEVIAWGGNEDGQTTVP 97 (282)
T ss_dssp SCCEEEECSSEE-EEE-E-TTEEEEEECCSSSTTSCC-GGGGSCCCEEEECSS--EEEEEE-TTEEEEEECCTTSTTCCC
T ss_pred CCcEEEeCCCeE-EEE-E-CCEEEEEeCCCCCCCCCC-ccCCCCEEEEEeCCC--EEEEEE-CCEEEEeeCCCCCCCCCC
Confidence 455555544322 333 4 8999999754 222111 111235666665433 222224 899999965432111100
Q ss_pred eecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCcee
Q 008496 354 EFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYV 433 (563)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~ 433 (563)
......+..+..-....++.. ++.|+.|-......+.........|..++......+++ . ||.+..|-......+
T Consensus 98 ~~~~~~v~~ia~G~~hs~al~--~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~~~~l--~-~G~v~~wG~n~~gql 172 (282)
T 3qhy_B 98 AEARSGVDAIAAGAWASYALK--DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALAV--K-NGGVIAWGDNYFGQT 172 (282)
T ss_dssp GGGSSSEEEEEEETTEEEEEE--TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEEE--E-TTEEEEEECCTTSTT
T ss_pred cccCCCeEEEECcCCEEEEEe--CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCEEEEE--E-CCEEEEecCCCCCCC
Confidence 111224555555455555554 89999997654322111111223577777654433332 3 799999976543222
Q ss_pred eeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCC
Q 008496 434 HDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDK 513 (563)
Q Consensus 434 ~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg 513 (563)
..-......|..++-... ..++. .||.|..|-....-.+-.-......|..|+-.....+ |. . ||
T Consensus 173 g~p~~~~~~v~~i~~G~~----------hs~al--~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h~~-al-~-~g 237 (282)
T 3qhy_B 173 TVPAEAQSGVDDVAGGIF----------HSLAL--KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWYSL-AL-K-NG 237 (282)
T ss_dssp SCCGGGGSSEEEEEECSS----------EEEEE--ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSCEE-EE-E-TT
T ss_pred CCceecCCCeEEEEecCC----------EEEEE--ECCeEEEEECCCCCCCCCCcccCCCceEEEcCCCEEE-EE-E-CC
Confidence 111112345666654332 23444 4899999965421111000111234667765544333 33 3 89
Q ss_pred cEEEEecCC
Q 008496 514 SMHIWSLKE 522 (563)
Q Consensus 514 ~v~iw~~~~ 522 (563)
.|+.|=...
T Consensus 238 ~v~~wG~n~ 246 (282)
T 3qhy_B 238 KVIAWGSSR 246 (282)
T ss_dssp EEEEESTTC
T ss_pred EEEEecCCC
Confidence 999997654
No 327
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=94.68 E-value=0.95 Score=40.05 Aligned_cols=139 Identities=11% Similarity=0.034 Sum_probs=77.5
Q ss_pred ceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCC--------EEEEEEccCCCCCCCCCCcEEEEEEeCCC
Q 008496 400 EVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKE--------IYTIRWSPTGSGTNNPNQQLILASASFDS 471 (563)
Q Consensus 400 ~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~--------i~~~~~~p~~~~~~~~~~~~~l~s~s~dg 471 (563)
.+..++|+|+|.+.+. .+|.+.-.+..+.... ........ -.++.|.|+|. +.++ .||
T Consensus 42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~-~W~~s~t~IG~~Gw~~F~a~~fD~~G~---------LYav--~dG 107 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDND-NWMGRAKKIGNGGWNQFQFLFFDPNGY---------LYAV--SKD 107 (236)
T ss_dssp TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTC-CHHHHCEEEECSCGGGCSEEEECTTSC---------EEEE--ETT
T ss_pred cceeEEECCCccEEEE--eCCeEEEECCCCCCcc-cccccccEecccccccceEEEECCCCC---------EEEe--CCC
Confidence 5679999999998777 6666555554332111 01111112 25677778774 3333 569
Q ss_pred eEEEEeCCCC-eEE-----EEe-cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCe------eEEEEe-cC-CCEE
Q 008496 472 TVKLWDVELG-KLL-----YSL-NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGK------IVKTYT-GN-GGIF 536 (563)
Q Consensus 472 ~i~iwd~~~~-~~~-----~~~-~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~------~~~~~~-~~-~~i~ 536 (563)
.|+-++..+. ..- ..+ ..--..+..|.|.|+|.+.|.. |+.++-+....+. ....+. .. ....
T Consensus 108 ~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr 185 (236)
T 1tl2_A 108 KLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFK 185 (236)
T ss_dssp EEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEE
T ss_pred EEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEE
Confidence 9987775321 100 011 1112357999999999988877 7775443333211 011111 11 1234
Q ss_pred EEEEcCCCCEEEEEECCCeE
Q 008496 537 EVCWNKEGDKIAACFANHTV 556 (563)
Q Consensus 537 ~l~w~~~g~~la~~~~~~~v 556 (563)
.+.|.++|...++. ++.+
T Consensus 186 ~l~f~~~G~l~~v~--~g~~ 203 (236)
T 1tl2_A 186 FLFFSSVGTLFGVQ--GGKF 203 (236)
T ss_dssp EEEECTTSCEEEEE--TTEE
T ss_pred EEEECCCCcEEEEe--CCeE
Confidence 57799999988887 6643
No 328
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=94.67 E-value=0.19 Score=48.08 Aligned_cols=195 Identities=13% Similarity=0.043 Sum_probs=101.7
Q ss_pred CEEEEeeCCCcEEEEECCCCceeEEeeec-ccCeEEEecC----CCceEEEE-eCCCeEEEEEcCCCcceeeecC----C
Q 008496 328 DYLLTGSCDKTAIVWDVKTEEWKQQFEFH-SGPTLDVDWR----NNVSFATS-STDNMIYVCKIGENRPIKTFAG----H 397 (563)
Q Consensus 328 ~~l~s~s~D~~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~-~~d~~i~~~~~~~~~~~~~~~~----h 397 (563)
..++.++.||.|.-.|..+|+.+-++... ..+++...-. +...++.. ..||.++.++..++.....+.- .
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 46888999999999999999877776554 1233332211 12333343 5899999998766533222210 1
Q ss_pred CcceeE---EEE-C----CCCCEEEEEeCCCcEEEEeCCCCceeeeecccCC--CE---EEEEEccCCCCCCCCCCcEEE
Q 008496 398 QGEVNC---VKW-D----PTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSK--EI---YTIRWSPTGSGTNNPNQQLIL 464 (563)
Q Consensus 398 ~~~i~~---~~~-~----~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~--~i---~~~~~~p~~~~~~~~~~~~~l 464 (563)
..++.. ... . ..+..+.+|+.+|.+.-.|+.+++.+..+..... .+ ...+.... . .........+
T Consensus 91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~-d-~~~d~~~~~v 168 (339)
T 2be1_A 91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEE-K-IKLQECENMI 168 (339)
T ss_dssp TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC----------------------CCEE
T ss_pred ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCccccccccccccccc-c-cccccCCCeE
Confidence 111111 000 0 1355678999999999999999998877753211 00 00000000 0 0000000134
Q ss_pred EEEeCCCeEEEEeCCCCeEEEEec-----CCCC--CE-EEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEE
Q 008496 465 ASASFDSTVKLWDVELGKLLYSLN-----GHRE--PV-YSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVK 527 (563)
Q Consensus 465 ~s~s~dg~i~iwd~~~~~~~~~~~-----~h~~--~i-~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~ 527 (563)
..+..+..+.+.+ ++|+ ++.+. .... ++ .+-.++.|+.+++ ++.||.|.-+|..+|+.+.
T Consensus 169 ~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~~~-~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 169 VIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMCIA-PFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp EEEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCCEE-EETTTEEEEECSTTCCEEE
T ss_pred EEecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcEEE-ECCCCEEEEEECCCCcEEE
Confidence 4555666666655 3343 22211 1100 00 0001123566644 7889999999998888765
No 329
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=94.46 E-value=0.56 Score=45.95 Aligned_cols=125 Identities=12% Similarity=0.137 Sum_probs=77.0
Q ss_pred CceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCC--CCCceEEEEEeeecccccCCCCeEEEEECCC---CCEEE
Q 008496 216 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQ--NGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE---GTLLA 290 (563)
Q Consensus 216 ~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~---g~~l~ 290 (563)
+.|..+..||+|++||..+ +..|.|-.++.+....... ..+..... .+..........+|..+.|+|- |..|+
T Consensus 66 ~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~t-y~l~~~~~~~~s~I~qVlWHPl~~~ds~LV 143 (452)
T 3pbp_A 66 DDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFH-YSIDEEEVGPKSSIKKVLFHPKSYRDSCIV 143 (452)
T ss_dssp CTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEE-EEGGGCC--CCCCEEEEEECTTBGGGCEEE
T ss_pred CceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccccceeE-EEcCCcccCCCCceeEEEeccccCCCCeEE
Confidence 3577899999999999874 5688888887543211100 01222111 1111111113577999999994 57899
Q ss_pred EEeCCCeEEEEEcCCce--eEeec---------cCCCCEEEEEeCCCCCEEEE--eeCCCcEEEE
Q 008496 291 TGSYDGQARIWSTNGDL--KCTLS---------KHKGPIFSLKWNKKGDYLLT--GSCDKTAIVW 342 (563)
Q Consensus 291 sg~~dg~i~vw~~~~~~--~~~~~---------~h~~~V~~l~~~~~~~~l~s--~s~D~~v~iw 342 (563)
+-..|+.||+||..... ...+. .....|.+++|.+++-.|.. .+..|.|.-.
T Consensus 144 VLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 144 VLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp EEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred EEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 99999999999976411 01222 12256888999987755555 3366666543
No 330
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=94.18 E-value=3.8 Score=38.56 Aligned_cols=140 Identities=11% Similarity=0.104 Sum_probs=65.4
Q ss_pred EEEEEeCCCeEEEEEcCCceeEe--ecc-CCCCEEEEEeCCCCCEEEEeeC----CC-------cEEEEECCCCceeEEe
Q 008496 288 LLATGSYDGQARIWSTNGDLKCT--LSK-HKGPIFSLKWNKKGDYLLTGSC----DK-------TAIVWDVKTEEWKQQF 353 (563)
Q Consensus 288 ~l~sg~~dg~i~vw~~~~~~~~~--~~~-h~~~V~~l~~~~~~~~l~s~s~----D~-------~v~iwd~~~~~~~~~~ 353 (563)
+++.|+. .+.+||.....-.. +.. ....-.++. ..++..++.|+. ++ .+.+||+.+.+|...-
T Consensus 18 i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~-~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~ 94 (318)
T 2woz_A 18 ILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIV-TQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLP 94 (318)
T ss_dssp EEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEE-CSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECS
T ss_pred hhhcccc--ceEEECCCCCceecccCCccCCccceEEE-EECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECC
Confidence 3444443 36777765443222 111 111122332 346667777763 12 1778899888876532
Q ss_pred eeccc-CeEEEecCCCceEEEEeCC-------CeEEEEEcCCCcce--eeecCCCcceeEEEECCCCCEEEEEeCC----
Q 008496 354 EFHSG-PTLDVDWRNNVSFATSSTD-------NMIYVCKIGENRPI--KTFAGHQGEVNCVKWDPTGSLLASCSDD---- 419 (563)
Q Consensus 354 ~~~~~-~~~~~~~~~~~~~~~~~~d-------~~i~~~~~~~~~~~--~~~~~h~~~i~~~~~~~~~~~las~s~d---- 419 (563)
..... ....+...++..++.++.+ ..+++++..+.+=. ..+......-.++. .++++++.|+.+
T Consensus 95 ~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~ 172 (318)
T 2woz_A 95 PLPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS--HNGMIYCLGGKTDDKK 172 (318)
T ss_dssp CBSSCBCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE--ETTEEEEECCEESSSC
T ss_pred CCCccccccceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE--ECCEEEEEcCCCCCCC
Confidence 21111 0112222245555665543 24667776554311 11111001111222 367777777642
Q ss_pred --CcEEEEeCCCCce
Q 008496 420 --VTAKIWNMKQDKY 432 (563)
Q Consensus 420 --g~i~iwd~~~~~~ 432 (563)
..+.+||..+...
T Consensus 173 ~~~~~~~yd~~~~~W 187 (318)
T 2woz_A 173 CTNRVFIYNPKKGDW 187 (318)
T ss_dssp BCCCEEEEETTTTEE
T ss_pred ccceEEEEcCCCCEE
Confidence 3578889877654
No 331
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=94.18 E-value=3.3 Score=38.90 Aligned_cols=177 Identities=8% Similarity=0.077 Sum_probs=85.3
Q ss_pred EEEeeCCCcEEEEECCCCceeEEeeecc---cCeEEEecCCCceEEEEeC-----C------CeEEEEEcCCCcc--eee
Q 008496 330 LLTGSCDKTAIVWDVKTEEWKQQFEFHS---GPTLDVDWRNNVSFATSST-----D------NMIYVCKIGENRP--IKT 393 (563)
Q Consensus 330 l~s~s~D~~v~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-----d------~~i~~~~~~~~~~--~~~ 393 (563)
++.|+ ..+.+||+.+.+|.. ..... ..-..+...++..++.++. . ..++.++..+.+= +..
T Consensus 8 ~~~GG--~~~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~ 84 (315)
T 4asc_A 8 FMISE--EGAVAYDPAANECYC-ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPP 84 (315)
T ss_dssp EEEET--TEEEEEETTTTEEEE-EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCC
T ss_pred EEEcC--CceEEECCCCCeEec-CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCC
Confidence 34454 579999999998864 22211 1122333445556666652 1 1256677655431 111
Q ss_pred ecCCCcceeEEEECCCCCEEEEEeCC--------CcEEEEeCCCCceeee--ecccCCCEEEEEEccCCCCCCCCCCcEE
Q 008496 394 FAGHQGEVNCVKWDPTGSLLASCSDD--------VTAKIWNMKQDKYVHD--LREHSKEIYTIRWSPTGSGTNNPNQQLI 463 (563)
Q Consensus 394 ~~~h~~~i~~~~~~~~~~~las~s~d--------g~i~iwd~~~~~~~~~--~~~~~~~i~~~~~~p~~~~~~~~~~~~~ 463 (563)
+.........+.+ ++++++.|+.+ ..+.+||..+.+.... +.........+.. + +. +
T Consensus 85 ~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~--------~~-i 151 (315)
T 4asc_A 85 LPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSH--M--------DL-V 151 (315)
T ss_dssp BSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--T--------TE-E
T ss_pred CCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEE--C--------CE-E
Confidence 1111111112222 56777777732 3578888877653321 1100000011111 1 12 4
Q ss_pred EEEEeC-C-----CeEEEEeCCCCeEEE--EecCCCCCEEEEEEcCCCCEEEEEeCCC-----cEEEEecCCCe
Q 008496 464 LASASF-D-----STVKLWDVELGKLLY--SLNGHREPVYSLAFSPTGEYLASGSLDK-----SMHIWSLKEGK 524 (563)
Q Consensus 464 l~s~s~-d-----g~i~iwd~~~~~~~~--~~~~h~~~i~~l~~spdg~~lasgs~dg-----~v~iw~~~~~~ 524 (563)
++.|+. + ..+.+||..+.+=.. .+......-.++.+ ++++++.|+.++ .+.+||+.+.+
T Consensus 152 yv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 223 (315)
T 4asc_A 152 YVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNK 223 (315)
T ss_dssp EEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTE
T ss_pred EEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCe
Confidence 445554 2 358888887654221 11111111122233 677778887654 58899998765
No 332
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=93.78 E-value=4.6 Score=38.10 Aligned_cols=234 Identities=12% Similarity=0.158 Sum_probs=129.7
Q ss_pred ECCCCCEEEEEeCCCeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCC-CceeEEeeeccc--
Q 008496 282 WNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT-EEWKQQFEFHSG-- 358 (563)
Q Consensus 282 ~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~-~~~~~~~~~~~~-- 358 (563)
.+|..+.||.-. ...+.|++++.+.+..-.....+|.--+|-.....-+.. +..|.-|++.. ....+.|..|..
T Consensus 74 MnP~~~ViALra-g~~LQiFnletK~klks~~~~e~VvfWkWis~~~L~lVT--~taVyHWs~~~~s~P~kvFdR~~~L~ 150 (365)
T 2xzh_A 74 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVT--DNAVYHWSMEGESQPVKMFDRHSSLA 150 (365)
T ss_dssp ECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSSCEEEEEECSSSEEEEEE--SSEEEEEESSTTCCCEEEEECCGGGT
T ss_pred eCCCccEEEEec-CCeEEEechHHhhhhcceecCCccEEEEecCCCeEEEEc--CCcEEEEcccCCCCCceeeecchhcc
Confidence 466667676665 578999999876554333345688888887655443332 46899999864 345556665542
Q ss_pred --CeEEEecCCCce-E-EEE--eCC----CeEEEEEcCCCcceeeecCCCcceeEEEECCC---CCEEEEEeC---CCcE
Q 008496 359 --PTLDVDWRNNVS-F-ATS--STD----NMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT---GSLLASCSD---DVTA 422 (563)
Q Consensus 359 --~~~~~~~~~~~~-~-~~~--~~d----~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~---~~~las~s~---dg~i 422 (563)
.++......+.. + +++ ..+ |.+.+|.... +..+.+.||.+....+...-+ .++++.+.. -+.+
T Consensus 151 ~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er-~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kL 229 (365)
T 2xzh_A 151 GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKL 229 (365)
T ss_dssp TCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT-TEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEE
T ss_pred cceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecc-cccceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEE
Confidence 233332222222 2 211 122 4556676644 334667788765544333211 224444433 2578
Q ss_pred EEEeCCCC-ceeeeecccCCCEEEEEEccCCCCCCC-----CCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEE
Q 008496 423 KIWNMKQD-KYVHDLREHSKEIYTIRWSPTGSGTNN-----PNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYS 496 (563)
Q Consensus 423 ~iwd~~~~-~~~~~~~~~~~~i~~~~~~p~~~~~~~-----~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~ 496 (563)
+|-++... .-- .........+-|.|+....+. ....-++..-..-|.|.+||++++.+++.-+-...+|..
T Consensus 230 hIiEi~~~~~~~---~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~~nrIS~d~iF~ 306 (365)
T 2xzh_A 230 HIIEVGTPPTGN---QPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFV 306 (365)
T ss_dssp EEEECSSCCTTC---CCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEE
T ss_pred EEEEcCCCCCCC---CCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEEeccCCCceEE
Confidence 88877432 000 111222344444443221110 001113445567899999999999999988777778877
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEecCC
Q 008496 497 LAFSPTGEYLASGSLDKSMHIWSLKE 522 (563)
Q Consensus 497 l~~spdg~~lasgs~dg~v~iw~~~~ 522 (563)
.+.+....-++.-...|.|.--.+..
T Consensus 307 ta~~~~~~Gi~~Vnr~GqVl~v~v~~ 332 (365)
T 2xzh_A 307 TAPHEATAGIIGVNRKGQVLSVCVEE 332 (365)
T ss_dssp EEEEGGGTEEEEEETTCEEEEEEECT
T ss_pred ecccCCCCcEEEEcCCCEEEEEEECc
Confidence 76655544455555666665555444
No 333
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=93.47 E-value=6.9 Score=39.14 Aligned_cols=102 Identities=10% Similarity=0.157 Sum_probs=57.1
Q ss_pred CEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeee--------cccCeEEEecCC-----CceEEEEeC-------
Q 008496 317 PIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEF--------HSGPTLDVDWRN-----NVSFATSST------- 376 (563)
Q Consensus 317 ~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~--------~~~~~~~~~~~~-----~~~~~~~~~------- 376 (563)
..++|+|.|+|+.+++-...+.|++++..++........ .....+.+.+.. ...+++.+.
T Consensus 28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~ 107 (454)
T 1cru_A 28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTD 107 (454)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--
T ss_pred CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCc
Confidence 457999999998666644335788887655543322111 122345677763 334444332
Q ss_pred -----CCeEEEEEcCCC-------ccee-eec-CCCcceeEEEECCCCCEEEEEeC
Q 008496 377 -----DNMIYVCKIGEN-------RPIK-TFA-GHQGEVNCVKWDPTGSLLASCSD 418 (563)
Q Consensus 377 -----d~~i~~~~~~~~-------~~~~-~~~-~h~~~i~~~~~~~~~~~las~s~ 418 (563)
...|..++.... +.+. .+. +.......|+|.|||.+.++.++
T Consensus 108 ~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 108 KELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred cccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 235555554321 1111 122 12234688999999998887654
No 334
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=93.26 E-value=6 Score=37.85 Aligned_cols=71 Identities=11% Similarity=0.079 Sum_probs=45.6
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEEcCCceeEee-------ccCCCCEEEEEeCCC---CCEEEEe---eCCCcEEEE
Q 008496 276 DVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTL-------SKHKGPIFSLKWNKK---GDYLLTG---SCDKTAIVW 342 (563)
Q Consensus 276 ~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~-------~~h~~~V~~l~~~~~---~~~l~s~---s~D~~v~iw 342 (563)
....|+|.|+|.++++--..|.|++++..+.....+ ....+....|+++|+ +.+|+.. ..++.|.-|
T Consensus 33 ~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~ 112 (347)
T 3das_A 33 SPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRM 112 (347)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEE
T ss_pred CceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEEE
Confidence 467899999999777765589999998653222211 123456789999995 3455433 234556666
Q ss_pred ECCC
Q 008496 343 DVKT 346 (563)
Q Consensus 343 d~~~ 346 (563)
.+..
T Consensus 113 ~~~~ 116 (347)
T 3das_A 113 LYDE 116 (347)
T ss_dssp EBCT
T ss_pred EeCC
Confidence 5543
No 335
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=92.40 E-value=4.6 Score=37.75 Aligned_cols=220 Identities=10% Similarity=0.074 Sum_probs=101.4
Q ss_pred CCEEEEeeC----CCcEEEEECCCCceeEEeeecccC-eEEEecCCCceEEEEeC----C-----CeEEEEEcCCCcc--
Q 008496 327 GDYLLTGSC----DKTAIVWDVKTEEWKQQFEFHSGP-TLDVDWRNNVSFATSST----D-----NMIYVCKIGENRP-- 390 (563)
Q Consensus 327 ~~~l~s~s~----D~~v~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----d-----~~i~~~~~~~~~~-- 390 (563)
+..++.|+. -..+.+||+.+.+|...-...... -..+...++..++.++. + +.+++++..+..-
T Consensus 25 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~ 104 (308)
T 1zgk_A 25 RLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSP 104 (308)
T ss_dssp CCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEE
T ss_pred CEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEECCEEEEECCCcCCCCCCeecceEEEECCCCCeEeE
Confidence 344455542 236788888888776532111110 01122224445555543 2 3467777655431
Q ss_pred eeeecCCCcceeEEEECCCCCEEEEEeCC-----CcEEEEeCCCCceeee--ecccCCCEEEEEEccCCCCCCCCCCcEE
Q 008496 391 IKTFAGHQGEVNCVKWDPTGSLLASCSDD-----VTAKIWNMKQDKYVHD--LREHSKEIYTIRWSPTGSGTNNPNQQLI 463 (563)
Q Consensus 391 ~~~~~~h~~~i~~~~~~~~~~~las~s~d-----g~i~iwd~~~~~~~~~--~~~~~~~i~~~~~~p~~~~~~~~~~~~~ 463 (563)
+..+........++.+ ++++++.|+.+ ..+.+||..+.+.... +......-..+.+ ++ .+
T Consensus 105 ~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~---------~i 171 (308)
T 1zgk_A 105 CAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NR---------LL 171 (308)
T ss_dssp CCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TT---------EE
T ss_pred CCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CC---------EE
Confidence 1111111111222333 57777777643 3577888876654321 1100001111111 11 24
Q ss_pred EEEEeCC-----CeEEEEeCCCCeEEE--EecCCCCCEEEEEEcCCCCEEEEEeCC-----CcEEEEecCCCeeEEEEec
Q 008496 464 LASASFD-----STVKLWDVELGKLLY--SLNGHREPVYSLAFSPTGEYLASGSLD-----KSMHIWSLKEGKIVKTYTG 531 (563)
Q Consensus 464 l~s~s~d-----g~i~iwd~~~~~~~~--~~~~h~~~i~~l~~spdg~~lasgs~d-----g~v~iw~~~~~~~~~~~~~ 531 (563)
++.|+.+ ..+.+||+.+.+=.. .+......-..+.+ ++++++.|+.+ ..+.+||+.+.+-...-..
T Consensus 172 yv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~ 249 (308)
T 1zgk_A 172 YAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPM 249 (308)
T ss_dssp EEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCC
T ss_pred EEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCC
Confidence 4455543 458888887654221 11111111223333 67777777764 4699999987653221111
Q ss_pred CCC--EEEEEEcCCCCEEEEEECC-----CeEEEEEee
Q 008496 532 NGG--IFEVCWNKEGDKIAACFAN-----HTVCVLDFR 562 (563)
Q Consensus 532 ~~~--i~~l~w~~~g~~la~~~~~-----~~v~v~~~~ 562 (563)
... -..++. -+++.+++|+.+ ..+.+||..
T Consensus 250 p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~ 286 (308)
T 1zgk_A 250 KHRRSALGITV-HQGRIYVLGGYDGHTFLDSVECYDPD 286 (308)
T ss_dssp SSCCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETT
T ss_pred CCCccceEEEE-ECCEEEEEcCcCCCcccceEEEEcCC
Confidence 110 011111 256666666533 356677753
No 336
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=91.78 E-value=8.5 Score=36.04 Aligned_cols=171 Identities=10% Similarity=0.096 Sum_probs=81.4
Q ss_pred cEEEEECCCCceeEEeeecc---cCeEEEecCCCceEEEEeC----CC-------eEEEEEcCCCcc--eeeecCCCcce
Q 008496 338 TAIVWDVKTEEWKQQFEFHS---GPTLDVDWRNNVSFATSST----DN-------MIYVCKIGENRP--IKTFAGHQGEV 401 (563)
Q Consensus 338 ~v~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~----d~-------~i~~~~~~~~~~--~~~~~~h~~~i 401 (563)
.+.+||+.+.+|.. ..... ..-..+...++..++.++. ++ .+++++..+..= +..+.......
T Consensus 25 ~~~~yd~~~~~W~~-~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~ 103 (318)
T 2woz_A 25 AAVAYDPMENECYL-TALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLF 103 (318)
T ss_dssp EEEEEETTTTEEEE-EEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSC
T ss_pred ceEEECCCCCceec-ccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCcccccc
Confidence 47899999988866 22211 1123334455666666662 11 166677654421 11111111111
Q ss_pred eEEEECCCCCEEEEEeCC-------CcEEEEeCCCCceeeeecccCCCE--EEEEEccCCCCCCCCCCcEEEEEEeC---
Q 008496 402 NCVKWDPTGSLLASCSDD-------VTAKIWNMKQDKYVHDLREHSKEI--YTIRWSPTGSGTNNPNQQLILASASF--- 469 (563)
Q Consensus 402 ~~~~~~~~~~~las~s~d-------g~i~iwd~~~~~~~~~~~~~~~~i--~~~~~~p~~~~~~~~~~~~~l~s~s~--- 469 (563)
.++.+ ++++++.|+.+ ..+.+||..+.+....-. ...+. .++.. .+ +. +++.|+.
T Consensus 104 ~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~-~p~~r~~~~~~~-~~--------~~-iyv~GG~~~~ 170 (318)
T 2woz_A 104 GLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKN-LPIKVYGHNVIS-HN--------GM-IYCLGGKTDD 170 (318)
T ss_dssp EEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECC-CSSCEESCEEEE-ET--------TE-EEEECCEESS
T ss_pred ceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCC-CCCcccccEEEE-EC--------CE-EEEEcCCCCC
Confidence 22223 56777777754 246778887665432110 00000 01111 11 12 3444442
Q ss_pred ---CCeEEEEeCCCCeEEEE--ecCCCCCEEEEEEcCCCCEEEEEeCC-----CcEEEEecCCCe
Q 008496 470 ---DSTVKLWDVELGKLLYS--LNGHREPVYSLAFSPTGEYLASGSLD-----KSMHIWSLKEGK 524 (563)
Q Consensus 470 ---dg~i~iwd~~~~~~~~~--~~~h~~~i~~l~~spdg~~lasgs~d-----g~v~iw~~~~~~ 524 (563)
-..+.+||+.+.+=... +.........+.+ +++.++.|+.+ ..+.+||+.+.+
T Consensus 171 ~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 233 (318)
T 2woz_A 171 KKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNK 233 (318)
T ss_dssp SCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCC
T ss_pred CCccceEEEEcCCCCEEEECCCCCCCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCe
Confidence 23588899887642211 1111111122333 66777777654 357789987764
No 337
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=91.75 E-value=7.4 Score=44.36 Aligned_cols=235 Identities=12% Similarity=0.150 Sum_probs=119.6
Q ss_pred ECCCCCEEEEEeCCCeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCC-ceeEEeeecc---
Q 008496 282 WNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE-EWKQQFEFHS--- 357 (563)
Q Consensus 282 ~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~-~~~~~~~~~~--- 357 (563)
.+|..+.||.-. ..++.|++++.+.+..-.....+|.--+|-.....-+.+ +..|.-|++... ...+.|..|.
T Consensus 73 MnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e~VvfWkWis~~~l~lVT--~~aVyHW~~~~~s~P~k~fdR~~~L~ 149 (1630)
T 1xi4_A 73 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVT--DNAVYHWSMEGESQPVKMFDRHSSLA 149 (1630)
T ss_pred cCCCcceEEEec-CCeEEEeehHHhhhhcccccCCCceEEEecCCCeeEEEc--CCeEEEeccCCCCccHHHHhcchhcc
Confidence 455556665554 578999998755432222234577777886554432222 468999998642 2333343332
Q ss_pred -cCeEEEecCCCce--EEEE------eCCCeEEEEEcCCCcceeeecCCCcceeEEEEC--C-CCCEEEEEeC---CCcE
Q 008496 358 -GPTLDVDWRNNVS--FATS------STDNMIYVCKIGENRPIKTFAGHQGEVNCVKWD--P-TGSLLASCSD---DVTA 422 (563)
Q Consensus 358 -~~~~~~~~~~~~~--~~~~------~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~--~-~~~~las~s~---dg~i 422 (563)
..++......+.. .++| ...|.+.+|..... ..+.+.||.+....+... + ..++++.+.. .+.+
T Consensus 150 ~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kL 228 (1630)
T 1xi4_A 150 GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKL 228 (1630)
T ss_pred cCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-cchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceE
Confidence 2233222222221 1221 13356666666433 234566776655444332 1 1234333322 2577
Q ss_pred EEEeCCCC-ceeeeecccCCCEEEEEEccCCCCCC------CCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEE
Q 008496 423 KIWNMKQD-KYVHDLREHSKEIYTIRWSPTGSGTN------NPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVY 495 (563)
Q Consensus 423 ~iwd~~~~-~~~~~~~~~~~~i~~~~~~p~~~~~~------~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~ 495 (563)
+|-++... .-. .........+-|.|+....+ ++. .-++..-+.-|.|.++|+.+|.+++.-+-...+|.
T Consensus 229 hi~Ei~~~~~~~---~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k-~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF 304 (1630)
T 1xi4_A 229 HIIEVGTPPTGN---QPFPKKAVDVFFPPEAQNDFPVAMQISEK-HDVVFLITKYGYIHLYDLETGTCIYMNRISGETIF 304 (1630)
T ss_pred EEEecCCCccCC---CCCccccccccCCcccccCcceEEEeccc-cCEEEEEecCceEEEEecccchhhhhccccCCceE
Confidence 88776432 000 11122233444544322111 111 11344455779999999999999887666666776
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEecCCCe
Q 008496 496 SLAFSPTGEYLASGSLDKSMHIWSLKEGK 524 (563)
Q Consensus 496 ~l~~spdg~~lasgs~dg~v~iw~~~~~~ 524 (563)
..+.++...-++.....|.|.--.+....
T Consensus 305 ~~~~~~~~~g~~~vnr~G~vl~v~v~~~~ 333 (1630)
T 1xi4_A 305 VTAPHEATAGIIGVNRKGQVLSVCVEEEN 333 (1630)
T ss_pred EeccCCCCCceEEEcCCceEEEEEEccch
Confidence 66655443333434456665555544433
No 338
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=91.25 E-value=18 Score=38.76 Aligned_cols=312 Identities=11% Similarity=0.086 Sum_probs=163.6
Q ss_pred CceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeCC
Q 008496 216 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD 295 (563)
Q Consensus 216 ~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~d 295 (563)
..|.++.-.+++.+.+ |+.+| +..++..++... .. ............|.++....++..|..|+.
T Consensus 146 ~~i~~i~~d~~g~lWi-gt~~G-l~~~~~~~~~~~-----------~~-~~~~~~~~~~~~i~~i~~d~~~~~lWigt~- 210 (758)
T 3ott_A 146 NTIYSIIRTKDNQIYV-GTYNG-LCRYIPSNGKFE-----------GI-PLPVHSSQSNLFVNSLLEDTTRQCVWIGTE- 210 (758)
T ss_dssp SCEEEEEECTTCCEEE-EETTE-EEEEETTTTEEE-----------EE-CCCCCTTCSSCCEEEEEEETTTTEEEEEEE-
T ss_pred CeEEEEEEcCCCCEEE-EeCCC-HhhCccCCCceE-----------Ee-cCCCccccccceeEEEEEECCCCEEEEEEC-
Confidence 4577888777887665 33444 556665432110 00 000000111235888888877765555554
Q ss_pred CeEEEEEcCCceeEeec-cCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeee-------cccCeEEEecCC
Q 008496 296 GQARIWSTNGDLKCTLS-KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEF-------HSGPTLDVDWRN 367 (563)
Q Consensus 296 g~i~vw~~~~~~~~~~~-~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~-------~~~~~~~~~~~~ 367 (563)
+-+..++........+. .....|.++.-.++|...+. +. +-+.+++..++.+...... ....+.++.-..
T Consensus 211 ~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWig-T~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~ 288 (758)
T 3ott_A 211 GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAG-TD-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQ 288 (758)
T ss_dssp EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEEE-ET-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECT
T ss_pred CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEE-eC-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcC
Confidence 45777886544322221 12345788887777765554 43 4578888877654332111 112244444333
Q ss_pred CceEEEEeCCCeEEEEEcCCCcceeeec-------CCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCc--eeeeec-
Q 008496 368 NVSFATSSTDNMIYVCKIGENRPIKTFA-------GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK--YVHDLR- 437 (563)
Q Consensus 368 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~-------~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~--~~~~~~- 437 (563)
+..+-.+...| +.++... .....+. .....|.++.-..+|.+-+ |+.+| +..++..++. ....+.
T Consensus 289 ~g~lWiGT~~G-l~~~~~~--~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWi-Gt~~G-l~~~~~~~~~~~~~~~~~~ 363 (758)
T 3ott_A 289 EHNIWLGTDYG-ISLSRYN--SALQFIPISQITGTGDGNQFYSLFRDSKGFYWF-GGANG-LIRFTDPAGERHDAIWYRM 363 (758)
T ss_dssp TCCEEEEESSS-EEEECCC--C-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEE-EETTE-EEEESCTTSSCCCCEEECT
T ss_pred CCCEEEEeCCc-ccccccC--CceeEEecccCCCCCCCceEEEEEEcCCCCEEE-eeCCc-ceeecccccccceeEEecc
Confidence 33344444444 3333221 1111111 1124688888888888654 45555 5556554321 111111
Q ss_pred ------ccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEe-cC-----CCCCEEEEEEcCCCCE
Q 008496 438 ------EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSL-NG-----HREPVYSLAFSPTGEY 505 (563)
Q Consensus 438 ------~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~-----h~~~i~~l~~spdg~~ 505 (563)
.....|.++.-..++. +++ |+ ++-|..+|..+++...-. .. ....|.++...++|.+
T Consensus 364 ~~~~~~l~~~~v~~i~~d~~g~--------lWi--gt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~l 432 (758)
T 3ott_A 364 GDKTYPLSHNRIRHIYEDKEQQ--------LWI--AT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQL 432 (758)
T ss_dssp TCSSSCCSCSCEEEEEECTTSC--------EEE--EE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSEE
T ss_pred CCcCCCCCCCceEEEEECCCCC--------EEE--Ee-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCCE
Confidence 0123477776555442 444 44 456899998877654321 11 1245889988888875
Q ss_pred EEEEeCCCcEEEEecCC------CeeE--EEEec-----CCCEEEEEEcCCCCEEEEEECCCeEEEEEe
Q 008496 506 LASGSLDKSMHIWSLKE------GKIV--KTYTG-----NGGIFEVCWNKEGDKIAACFANHTVCVLDF 561 (563)
Q Consensus 506 lasgs~dg~v~iw~~~~------~~~~--~~~~~-----~~~i~~l~w~~~g~~la~~~~~~~v~v~~~ 561 (563)
.+ |+..+-|.+++..+ +... ..+.. ...|.++.-+++|+.-++++.++.+..+|.
T Consensus 433 Wi-gT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~ 500 (758)
T 3ott_A 433 WI-STCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINP 500 (758)
T ss_dssp EE-EESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEET
T ss_pred EE-EECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEeC
Confidence 55 56555588888642 1221 22321 224889999999986653333445666664
No 339
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=90.55 E-value=14 Score=36.36 Aligned_cols=234 Identities=12% Similarity=0.151 Sum_probs=129.8
Q ss_pred ECCCCCEEEEEeCCCeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCC-CceeEEeeeccc--
Q 008496 282 WNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT-EEWKQQFEFHSG-- 358 (563)
Q Consensus 282 ~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~-~~~~~~~~~~~~-- 358 (563)
.+|..+.||.-. ...+.|++++.+.+..-.....+|.--+|-.....-+. .+..|.-|++.. ....+.|..|..
T Consensus 73 MnP~~~iiALra-g~~lQiFnle~K~klks~~~~e~VvfWkWis~~~l~lV--T~taVyHWsi~~~s~P~kvFdR~~~L~ 149 (494)
T 1bpo_A 73 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALV--TDNAVYHWSMEGESQPVKMFDRHSSLA 149 (494)
T ss_dssp ECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEEEETTEEEEE--CSSEEEEEESSSSCCCEEEEECCGGGT
T ss_pred eCCCCcEEEEec-CCeEEEEchHHhhhhcceecCCCceEEEecCCCeEEEE--cCCeeEEecccCCCCchhheecchhcc
Confidence 456666666654 67999999987654433333456777788655433222 246899999864 345556665542
Q ss_pred --CeEEEecCCCce-EE-EE--eC----CCeEEEEEcCCCcceeeecCCCcceeEEEECCC---CCEEEEEeCC---CcE
Q 008496 359 --PTLDVDWRNNVS-FA-TS--ST----DNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT---GSLLASCSDD---VTA 422 (563)
Q Consensus 359 --~~~~~~~~~~~~-~~-~~--~~----d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~---~~~las~s~d---g~i 422 (563)
.++......+.. ++ ++ .. .|.+.+|.... +.-+.+.||.+....+...-+ .++++.+... +.+
T Consensus 150 ~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er-~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kL 228 (494)
T 1bpo_A 150 GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKL 228 (494)
T ss_dssp TCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTT-CCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEE
T ss_pred cceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccc-cccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEE
Confidence 233332222221 22 11 12 24566776654 334667888776655544321 1345545443 678
Q ss_pred EEEeCCCC-ceeeeecccCCCEEEEEEccCCCCCC------CCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEE
Q 008496 423 KIWNMKQD-KYVHDLREHSKEIYTIRWSPTGSGTN------NPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVY 495 (563)
Q Consensus 423 ~iwd~~~~-~~~~~~~~~~~~i~~~~~~p~~~~~~------~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~ 495 (563)
+|-++... .-. .........+-|.|+....+ ++.. -++..-..-|.|.+||+.++.+++.-+-...+|.
T Consensus 229 hi~Ei~~~~~~~---~~f~kk~vdv~fppe~~~DFPvamqvs~ky-gviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF 304 (494)
T 1bpo_A 229 HIIEVGTPPTGN---QPFPKKAVDVFFPPEAQNDFPVAMQISEKH-DVVFLITKYGYIHLYDLETGTCIYMNRISGETIF 304 (494)
T ss_dssp EEEECSCCCTTC---CCCCCEEEECCCCTTSTTCCEEEEEEETTT-TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred EEEEcCCCccCC---CCccceeeeeeCCcccccCceeEEEecccC-CEEEEEecCceEEEEecccceeeeeecccCCceE
Confidence 88877432 000 01112233333433321110 0011 1344556789999999999999998877777887
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 008496 496 SLAFSPTGEYLASGSLDKSMHIWSLKEG 523 (563)
Q Consensus 496 ~l~~spdg~~lasgs~dg~v~iw~~~~~ 523 (563)
..+.+....-++.....|.|.--.+...
T Consensus 305 ~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~ 332 (494)
T 1bpo_A 305 VTAPHEATAGIIGVNRKGQVLSVCVEEE 332 (494)
T ss_dssp EEEEETTTTEEEEEETTCEEEEEEECTT
T ss_pred EecccCCCCcEEEEccCceEEEEEEccc
Confidence 7777666555555567776655555443
No 340
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=89.88 E-value=11 Score=40.19 Aligned_cols=191 Identities=9% Similarity=0.070 Sum_probs=94.1
Q ss_pred CCCCEEEEeeCC----CcEEEEECCCCceeEEe-ee-----ccc-CeEEEecC--CCceEEEEeCC------CeEEEEEc
Q 008496 325 KKGDYLLTGSCD----KTAIVWDVKTEEWKQQF-EF-----HSG-PTLDVDWR--NNVSFATSSTD------NMIYVCKI 385 (563)
Q Consensus 325 ~~~~~l~s~s~D----~~v~iwd~~~~~~~~~~-~~-----~~~-~~~~~~~~--~~~~~~~~~~d------~~i~~~~~ 385 (563)
.++..++.|+.+ ..+.+||+.+.+|...- .. ... .-..+... ++..++.++.+ +.+++++.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 345566666643 46888999888876643 21 110 01122222 55556665532 24667776
Q ss_pred CCCc--ceeeecCCCcceeEEEECCCCCEEEEEeCCC--cEEEEeCCCCceeeeec-----ccCCCEEEEEEccCCCCCC
Q 008496 386 GENR--PIKTFAGHQGEVNCVKWDPTGSLLASCSDDV--TAKIWNMKQDKYVHDLR-----EHSKEIYTIRWSPTGSGTN 456 (563)
Q Consensus 386 ~~~~--~~~~~~~h~~~i~~~~~~~~~~~las~s~dg--~i~iwd~~~~~~~~~~~-----~~~~~i~~~~~~p~~~~~~ 456 (563)
.+.. .+..+......- +++.-.++++++.|+.++ .+.+||..+......-. .......++.+....
T Consensus 476 ~t~~W~~~~~~p~~R~~h-~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~---- 550 (695)
T 2zwa_A 476 KTREWSMIKSLSHTRFRH-SACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVS---- 550 (695)
T ss_dssp TTTEEEECCCCSBCCBSC-EEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTT----
T ss_pred CCCcEEECCCCCCCcccc-eEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCC----
Confidence 6532 111111111111 233323788888887655 68899988765432110 000001112222210
Q ss_pred CCCCcEEEEEEeC--C-----CeEEEEeCCCCe--------EEEEec-CCCCCEEEEEEcCCCCEEEEEeC--------C
Q 008496 457 NPNQQLILASASF--D-----STVKLWDVELGK--------LLYSLN-GHREPVYSLAFSPTGEYLASGSL--------D 512 (563)
Q Consensus 457 ~~~~~~~l~s~s~--d-----g~i~iwd~~~~~--------~~~~~~-~h~~~i~~l~~spdg~~lasgs~--------d 512 (563)
+ .+++.|+. + +.+.+||+.+.+ .+.... ........+ ...++++++.||. .
T Consensus 551 ---~-~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~-~~~~~~iyv~GG~~~~~~~~~~ 625 (695)
T 2zwa_A 551 ---K-QGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIK-YITPRKLLIVGGTSPSGLFDRT 625 (695)
T ss_dssp ---T-EEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEE-EEETTEEEEECCBCSSCCCCTT
T ss_pred ---C-EEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEE-EeCCCEEEEECCccCCCCCCCC
Confidence 1 24445544 2 458889987765 112211 111112223 3333777787774 3
Q ss_pred CcEEEEecCCCee
Q 008496 513 KSMHIWSLKEGKI 525 (563)
Q Consensus 513 g~v~iw~~~~~~~ 525 (563)
..|.+||+.+.+-
T Consensus 626 ~~v~~yd~~t~~W 638 (695)
T 2zwa_A 626 NSIISLDPLSETL 638 (695)
T ss_dssp TSEEEEETTTTEE
T ss_pred CeEEEEECCCCeE
Confidence 4699999987754
No 341
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=89.75 E-value=6.6 Score=37.50 Aligned_cols=39 Identities=13% Similarity=0.049 Sum_probs=17.8
Q ss_pred cEEEEecCCCe--eEEEEecCCCEEEEEEcCCCCEEEEEECC
Q 008496 514 SMHIWSLKEGK--IVKTYTGNGGIFEVCWNKEGDKIAACFAN 553 (563)
Q Consensus 514 ~v~iw~~~~~~--~~~~~~~~~~i~~l~w~~~g~~la~~~~~ 553 (563)
.+.+||+.+.+ .+..+... .....+..-+++.+++|+.+
T Consensus 286 ~~~~yd~~~~~W~~~~~~p~~-r~~~~~~~~~~~i~v~GG~~ 326 (357)
T 2uvk_A 286 STDIHLWHNGKWDKSGELSQG-RAYGVSLPWNNSLLIIGGET 326 (357)
T ss_dssp CCEEEECC---CEEEEECSSC-CBSSEEEEETTEEEEEEEEC
T ss_pred eEEEEecCCCceeeCCCCCCC-cccceeEEeCCEEEEEeeeC
Confidence 57889987654 33222211 11111222467777777644
No 342
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=89.66 E-value=0.65 Score=47.03 Aligned_cols=90 Identities=13% Similarity=0.201 Sum_probs=61.2
Q ss_pred eEEEEeCCC----Ce-EEEEecCCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEecCC------Cee-------EEEEecC
Q 008496 472 TVKLWDVEL----GK-LLYSLNGHREPVYSLAFSPTGEYLASGS-LDKSMHIWSLKE------GKI-------VKTYTGN 532 (563)
Q Consensus 472 ~i~iwd~~~----~~-~~~~~~~h~~~i~~l~~spdg~~lasgs-~dg~v~iw~~~~------~~~-------~~~~~~~ 532 (563)
.|.+.|.+. +. .++.+.. ......+..+|||++++.++ .+.+|.|+++.+ +++ +......
T Consensus 299 gv~ViD~~~~~~~~~~~~~~iP~-pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~G 377 (638)
T 3sbq_A 299 KTPVLDGRKKDGKDSKFTRYVPV-PKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELG 377 (638)
T ss_dssp CCCEEECSCBTTBCCSSEEEEEE-SSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCC
T ss_pred CeeEEccccccccCCceEEEEeC-CCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCC
Confidence 367777665 22 2222221 12235688999999987655 578999999874 222 3333444
Q ss_pred CCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496 533 GGIFEVCWNKEGDKIAACFANHTVCVLDFR 562 (563)
Q Consensus 533 ~~i~~l~w~~~g~~la~~~~~~~v~v~~~~ 562 (563)
-+....+|+++|.-..+.+-|.+|+-||+.
T Consensus 378 lGPlHt~Fd~~G~aYTtlfidSqvvkWni~ 407 (638)
T 3sbq_A 378 LGPLHTTFDGRGNAYTTLFIDSQVVKWNME 407 (638)
T ss_dssp SCEEEEEECSSSEEEEEETTTTEEEEEEHH
T ss_pred CcccEEEECCCCceEeeeeecceEEEEecc
Confidence 567899999999666677899999999974
No 343
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=89.13 E-value=26 Score=37.42 Aligned_cols=266 Identities=9% Similarity=0.065 Sum_probs=145.3
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCceeEeec--c----CCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCC
Q 008496 274 SKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLS--K----HKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE 347 (563)
Q Consensus 274 ~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~--~----h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~ 347 (563)
...|.++....+|.+.+ |+.+ -+..++........+. . ....|.++...+++..|..|.. +-+..+|..++
T Consensus 145 ~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~ 221 (758)
T 3ott_A 145 NNTIYSIIRTKDNQIYV-GTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTG 221 (758)
T ss_dssp CSCEEEEEECTTCCEEE-EETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTT
T ss_pred CCeEEEEEEcCCCCEEE-EeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCC
Confidence 35688888888888765 4444 4667776544332221 1 1224888887777765555553 46888998877
Q ss_pred ceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecC--------CCcceeEEEECCCCCEEEEEeCC
Q 008496 348 EWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAG--------HQGEVNCVKWDPTGSLLASCSDD 419 (563)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~--------h~~~i~~~~~~~~~~~las~s~d 419 (563)
.+..........+.++.-..+..+..+.. +-+++++...... ..+.. ....|.++..+.+|.+- .|+..
T Consensus 222 ~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~Gl~~~~~~~~~~-~~~~~~~~~~~~l~~~~i~~i~~D~~g~lW-iGT~~ 298 (758)
T 3ott_A 222 QIKQTEAFHNNSIKSLALDGNGDLLAGTD-NGLYVYHNDTTPL-QHIIHDSRNIQSLTNNIIWNIFADQEHNIW-LGTDY 298 (758)
T ss_dssp EEEEEEEEEEEEEEEEEECTTCCEEEEET-TEEEEECCTTSCC-EEECCCTTCTTSCSCSCEEEEEECTTCCEE-EEESS
T ss_pred eEEeccCCCCCeEEEEEEcCCCCEEEEeC-CceeEEecCCCcE-EEEEcCCCCcCcCCcCeEEEEEEcCCCCEE-EEeCC
Confidence 65432222223344554444444544443 4566776554322 22211 12358899888888754 45555
Q ss_pred CcEEEEeCCCCceeeeec-----ccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe--EEEEec--C-
Q 008496 420 VTAKIWNMKQDKYVHDLR-----EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK--LLYSLN--G- 489 (563)
Q Consensus 420 g~i~iwd~~~~~~~~~~~-----~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~--~- 489 (563)
| +.++.....-...... .....|.++.-..+|. +++ |+.+| +..++..+++ ....+. .
T Consensus 299 G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~--------lWi--Gt~~G-l~~~~~~~~~~~~~~~~~~~~~ 366 (758)
T 3ott_A 299 G-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGF--------YWF--GGANG-LIRFTDPAGERHDAIWYRMGDK 366 (758)
T ss_dssp S-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCC--------EEE--EETTE-EEEESCTTSSCCCCEEECTTCS
T ss_pred c-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCC--------EEE--eeCCc-ceeecccccccceeEEeccCCc
Confidence 6 5444322111111110 1123577777655543 344 44455 5566655431 111111 0
Q ss_pred ----CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEE--e-----cCCCEEEEEEcCCCCEEEEEECCCeEEE
Q 008496 490 ----HREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTY--T-----GNGGIFEVCWNKEGDKIAACFANHTVCV 558 (563)
Q Consensus 490 ----h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~--~-----~~~~i~~l~w~~~g~~la~~~~~~~v~v 558 (563)
....|.++.-.++|.+.+ |+. +-|..|+..+++...-. . ....|.++.-+++|...+ |..++.+.+
T Consensus 367 ~~~l~~~~v~~i~~d~~g~lWi-gt~-~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gT~~~Gl~~ 443 (758)
T 3ott_A 367 TYPLSHNRIRHIYEDKEQQLWI-ATD-GSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWI-STCLGGIFV 443 (758)
T ss_dssp SSCCSCSCEEEEEECTTSCEEE-EET-TEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSEEEE-EESSSCEEE
T ss_pred CCCCCCCceEEEEECCCCCEEE-EeC-CcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCCEEE-EECCCceEE
Confidence 123589998888887655 443 45999999887654322 1 123578888888886544 544445666
Q ss_pred EE
Q 008496 559 LD 560 (563)
Q Consensus 559 ~~ 560 (563)
+|
T Consensus 444 ~~ 445 (758)
T 3ott_A 444 VD 445 (758)
T ss_dssp EE
T ss_pred Ec
Confidence 65
No 344
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=88.25 E-value=18 Score=38.34 Aligned_cols=148 Identities=12% Similarity=0.124 Sum_probs=77.8
Q ss_pred CCCCEEEEEeCC----CeEEEEEcCCceeEeec-c--------CCCCEEEEEeCCCCCEEEEeeCC------CcEEEEEC
Q 008496 284 GEGTLLATGSYD----GQARIWSTNGDLKCTLS-K--------HKGPIFSLKWNKKGDYLLTGSCD------KTAIVWDV 344 (563)
Q Consensus 284 ~~g~~l~sg~~d----g~i~vw~~~~~~~~~~~-~--------h~~~V~~l~~~~~~~~l~s~s~D------~~v~iwd~ 344 (563)
.++.+++.||.+ ..+.+||........+. . ....-..+.+..++..++.|+.+ +.+.+||+
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 467788888764 35777876544322222 1 11111222232266667777654 35789999
Q ss_pred CCCceeEEeeecccC--eEEEecCCCceEEEEeCCC--eEEEEEcCCCccee--e---ecCCCcceeEEEECCC-CCEEE
Q 008496 345 KTEEWKQQFEFHSGP--TLDVDWRNNVSFATSSTDN--MIYVCKIGENRPIK--T---FAGHQGEVNCVKWDPT-GSLLA 414 (563)
Q Consensus 345 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~d~--~i~~~~~~~~~~~~--~---~~~h~~~i~~~~~~~~-~~~la 414 (563)
.+.+|...-...... ...+.+.++..++.++.++ .+++|+..+..=.. . +........++.+..+ +++++
T Consensus 476 ~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv 555 (695)
T 2zwa_A 476 KTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGII 555 (695)
T ss_dssp TTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEE
T ss_pred CCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEE
Confidence 988876542221111 1122223556666665443 67888876543111 0 1111112233555554 67777
Q ss_pred EEeC--C-----CcEEEEeCCCCc
Q 008496 415 SCSD--D-----VTAKIWNMKQDK 431 (563)
Q Consensus 415 s~s~--d-----g~i~iwd~~~~~ 431 (563)
.|+. + ..+.+||+.+..
T Consensus 556 ~GG~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 556 LGGGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp ECCBCTTSSCBCCEEEEEEECTTC
T ss_pred ECCcCCCCCeeeCcEEEEEccCCc
Confidence 7765 2 357888887765
No 345
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=87.78 E-value=14 Score=32.65 Aligned_cols=100 Identities=14% Similarity=0.114 Sum_probs=55.7
Q ss_pred eeEEEECCCCCEEEEEeCCCcEEEEeCCCCceee------ee-cccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeE
Q 008496 401 VNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVH------DL-REHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTV 473 (563)
Q Consensus 401 i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~------~~-~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i 473 (563)
..++.|+|+|.+.++ .||.|.-++-.+...-. .+ ..-=..+..|.+.|+|. |.... |+.+
T Consensus 90 F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~----------Lyav~-dg~l 156 (236)
T 1tl2_A 90 FQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGY----------LYAVH-GQQF 156 (236)
T ss_dssp CSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSC----------EEEEE-TTEE
T ss_pred ceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCce----------EEEEe-CCcE
Confidence 478999999999888 45888777653211110 00 00114678899999884 44444 8875
Q ss_pred EEEeCCCCe------EEEEec-CCCCCEEEEEEcCCCCEEEEEeCCCcE
Q 008496 474 KLWDVELGK------LLYSLN-GHREPVYSLAFSPTGEYLASGSLDKSM 515 (563)
Q Consensus 474 ~iwd~~~~~------~~~~~~-~h~~~i~~l~~spdg~~lasgs~dg~v 515 (563)
+-+...++. ....+. .....-.-+.|+|+|...++- ++.+
T Consensus 157 yr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g~~ 203 (236)
T 1tl2_A 157 YKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GGKF 203 (236)
T ss_dssp EEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TTEE
T ss_pred EecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe--CCeE
Confidence 433322111 001111 122223446789999877765 6643
No 346
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=87.35 E-value=8.2 Score=36.85 Aligned_cols=49 Identities=12% Similarity=0.165 Sum_probs=26.3
Q ss_pred CcEEEEECCCCceeEEeeecccC-e-EEEecCCCceEEEEeC------CCeEEEEEc
Q 008496 337 KTAIVWDVKTEEWKQQFEFHSGP-T-LDVDWRNNVSFATSST------DNMIYVCKI 385 (563)
Q Consensus 337 ~~v~iwd~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~------d~~i~~~~~ 385 (563)
..+.+||+.+.+|...-...... . ..+...++..++.++. ...++.+++
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~ 224 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDF 224 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEEC
T ss_pred ccEEEEeCCCCcEEECCCCCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEe
Confidence 57899999998887653322111 1 2222334555555542 234666665
No 347
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=87.33 E-value=18 Score=33.34 Aligned_cols=180 Identities=16% Similarity=0.091 Sum_probs=90.4
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEEcC--CceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEe
Q 008496 276 DVTTLDWNGEGTLLATGSYDGQARIWSTN--GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF 353 (563)
Q Consensus 276 ~V~~l~~s~~g~~l~sg~~dg~i~vw~~~--~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~ 353 (563)
.|..++-.....+++ . ||.+..|-.+ +++-. ...-...|..++.... +.+.-. ||.|..|-..........
T Consensus 64 ~i~~ia~G~~hs~~l--~-~G~v~~wG~n~~Gqlg~-P~~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg~~ 136 (282)
T 3qhy_B 64 GVDAIAAGNYHSLAL--K-DGEVIAWGGNEDGQTTV-PAEARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTTVP 136 (282)
T ss_dssp CCCEEEECSSEEEEE--E-TTEEEEEECCTTSTTCC-CGGGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTSCC
T ss_pred CEEEEEeCCCEEEEE--E-CCEEEEeeCCCCCCCCC-CcccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCCCC
Confidence 455665554433333 4 8999999754 22211 1111346777765443 444445 899999965432111111
Q ss_pred eecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCcee
Q 008496 354 EFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYV 433 (563)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~ 433 (563)
......+..+..-....++.. ++.++.|-......+..-..-...|..++......+ +. .||.+..|-.+....+
T Consensus 137 ~~~~~~i~~i~~G~~~~~~l~--~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~hs~-al--~~G~v~~wG~n~~gql 211 (282)
T 3qhy_B 137 AEAQSGVTALDGGVYTALAVK--NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIFHSL-AL--KDGKVIAWGDNRYKQT 211 (282)
T ss_dssp GGGGSSEEEEEECSSEEEEEE--TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEE-EE--ETTEEEEEECCTTSTT
T ss_pred ccCCCCeEEEEcccCEEEEEE--CCEEEEecCCCCCCCCCceecCCCeEEEEecCCEEE-EE--ECCeEEEEECCCCCCC
Confidence 111233555544444444443 789999876543222111111245777776644333 33 5899999976543222
Q ss_pred eeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCC
Q 008496 434 HDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE 479 (563)
Q Consensus 434 ~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~ 479 (563)
..-......|..++-... ..++.. ||.|..|-..
T Consensus 212 g~p~~~~~~v~~i~~G~~----------h~~al~--~g~v~~wG~n 245 (282)
T 3qhy_B 212 TVPTEALSGVSAIASGEW----------YSLALK--NGKVIAWGSS 245 (282)
T ss_dssp CCCGGGGSSCCEEEECSS----------CEEEEE--TTEEEEESTT
T ss_pred CCCcccCCCceEEEcCCC----------EEEEEE--CCEEEEecCC
Confidence 111111233555543222 123333 8999999654
No 348
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=87.07 E-value=26 Score=34.96 Aligned_cols=104 Identities=12% Similarity=0.084 Sum_probs=57.3
Q ss_pred CEEEEEeCCCCC-EEEEeeCCCcEEEEECCCCc---eeEEee--ec-------ccCeEEEecCCC-----ceEEEEeC--
Q 008496 317 PIFSLKWNKKGD-YLLTGSCDKTAIVWDVKTEE---WKQQFE--FH-------SGPTLDVDWRNN-----VSFATSST-- 376 (563)
Q Consensus 317 ~V~~l~~~~~~~-~l~s~s~D~~v~iwd~~~~~---~~~~~~--~~-------~~~~~~~~~~~~-----~~~~~~~~-- 376 (563)
.-+.|+|.|+|. .|+.+...|.|++++..... .+..+. .. ....+.+.+.++ ..+++-+.
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~ 94 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ 94 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence 347899999996 56666788999999754221 111110 00 223566666553 33343221
Q ss_pred C----------CeEEEEEcCCC----------cceeeec--CCCcceeEEEECCCCCEEEEEeCCC
Q 008496 377 D----------NMIYVCKIGEN----------RPIKTFA--GHQGEVNCVKWDPTGSLLASCSDDV 420 (563)
Q Consensus 377 d----------~~i~~~~~~~~----------~~~~~~~--~h~~~i~~~~~~~~~~~las~s~dg 420 (563)
+ ..|..+.+... +.+..+. ........|+|.|||.+.++.++.+
T Consensus 95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~ 160 (463)
T 2wg3_C 95 ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGM 160 (463)
T ss_dssp CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTT
T ss_pred CCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCC
Confidence 1 24555555421 1122221 1223457899999999988777644
No 349
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=86.03 E-value=38 Score=35.89 Aligned_cols=217 Identities=14% Similarity=0.098 Sum_probs=111.8
Q ss_pred eCCCCCEEEEe-e---CC-CcEEEEECCCCceeE-EeeecccC--------eEEEecCCCceEEEEe-----------CC
Q 008496 323 WNKKGDYLLTG-S---CD-KTAIVWDVKTEEWKQ-QFEFHSGP--------TLDVDWRNNVSFATSS-----------TD 377 (563)
Q Consensus 323 ~~~~~~~l~s~-s---~D-~~v~iwd~~~~~~~~-~~~~~~~~--------~~~~~~~~~~~~~~~~-----------~d 377 (563)
++|++++++.+ | +| ..++++|+.+++.+. .|. .... ...+.|.++..|..+. ..
T Consensus 137 ~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~-~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~~~~~~~ 215 (711)
T 4hvt_A 137 CFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFE-PITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEITSSLYP 215 (711)
T ss_dssp CSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSC-CBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCBCTTSSB
T ss_pred cCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcc-cccccccccccccceeeEECCCEEEEEeCCCCCCcCcCCCC
Confidence 78888876542 2 22 368999999988764 222 1100 0233777555554432 12
Q ss_pred CeEEEEEcCCCc--ceeeecCCCcce-eEEEECCCCC-----EEEEEeCC---CcEEEEeCCC--CceeeeecccCCCEE
Q 008496 378 NMIYVCKIGENR--PIKTFAGHQGEV-NCVKWDPTGS-----LLASCSDD---VTAKIWNMKQ--DKYVHDLREHSKEIY 444 (563)
Q Consensus 378 ~~i~~~~~~~~~--~~~~~~~h~~~i-~~~~~~~~~~-----~las~s~d---g~i~iwd~~~--~~~~~~~~~~~~~i~ 444 (563)
..|+.|.+++.. ....|.+....+ ..+..+++++ .+++.+.+ ..+.+.+... +.. ..+......
T Consensus 216 ~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~-- 292 (711)
T 4hvt_A 216 NSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKL-QKINMPSDA-- 292 (711)
T ss_dssp CEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEE-EECCSCTTC--
T ss_pred CEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcc-eEeecCCcc--
Confidence 468899988753 344555544433 2445566666 34554422 2344445432 221 222111111
Q ss_pred EEEEccCCCCCCCCCCcEEEEE---------EeCCCeEEEEeCCCCe-------EEEE-ec-CCCCCEEEEEEcCCCCEE
Q 008496 445 TIRWSPTGSGTNNPNQQLILAS---------ASFDSTVKLWDVELGK-------LLYS-LN-GHREPVYSLAFSPTGEYL 506 (563)
Q Consensus 445 ~~~~~p~~~~~~~~~~~~~l~s---------~s~dg~i~iwd~~~~~-------~~~~-~~-~h~~~i~~l~~spdg~~l 506 (563)
.+.+.+.+ .+++.+ ....+.|...|+.++. .... +. .....+..+.|..+ .++
T Consensus 293 ~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~ 363 (711)
T 4hvt_A 293 TLQGSFKE--------YVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVF 363 (711)
T ss_dssp EEEEEETT--------EEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEE
T ss_pred eEeeeECC--------EEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEE
Confidence 11222222 122222 1245677778776421 1112 22 12345778888876 566
Q ss_pred EEEeCCC--cEEEEecCCCe-eEEE---EecCCCEEEEEEcCCCCEEEEEEC
Q 008496 507 ASGSLDK--SMHIWSLKEGK-IVKT---YTGNGGIFEVCWNKEGDKIAACFA 552 (563)
Q Consensus 507 asgs~dg--~v~iw~~~~~~-~~~~---~~~~~~i~~l~w~~~g~~la~~~~ 552 (563)
++...++ .|.++++.+++ .+.. +...+.+..++.+++++.+++.+.
T Consensus 364 ~~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~s 415 (711)
T 4hvt_A 364 LATYDNVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIE 415 (711)
T ss_dssp EEEEETTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEE
T ss_pred EEEEECCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEe
Confidence 7777776 47778776664 1222 233355667777888876665543
No 350
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=85.64 E-value=23 Score=32.98 Aligned_cols=139 Identities=8% Similarity=0.015 Sum_probs=80.3
Q ss_pred EECCCCCEEEEEeCC--------------CeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEee--CCC--cEEEE
Q 008496 281 DWNGEGTLLATGSYD--------------GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGS--CDK--TAIVW 342 (563)
Q Consensus 281 ~~s~~g~~l~sg~~d--------------g~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s--~D~--~v~iw 342 (563)
-++++|.+|.-+... ..|+..+.+|.....+.... +..|++++++|+-.. .++ .|..-
T Consensus 59 ~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~~~----~~~~s~~g~~Iy~~~~~~~~~~~Iy~~ 134 (302)
T 3s25_A 59 YINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDPDP----CIYASLIGNYIYYLHYDTQTATSLYRI 134 (302)
T ss_dssp EEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEECSC----EEEEEEETTEEEEEEESSSSCEEEEEE
T ss_pred eEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeecCC----ccEEEEeCCEEEEEeecCCCCceEEEE
Confidence 457788887776543 36777788776555554322 236778888888665 334 44444
Q ss_pred ECCCCceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCC--
Q 008496 343 DVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDV-- 420 (563)
Q Consensus 343 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg-- 420 (563)
++..... ..+..+.. ..++|.....+.+......|++.++........+.+ ... ..++|++.+|+-....+
T Consensus 135 ~~dGs~~-~~lt~~~~--~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~---~~~-~~~~P~g~~iy~t~~~~~~ 207 (302)
T 3s25_A 135 RIDGEEK-KKIKNHYL--FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDC---NCY-KPVVLDDTNVYYMDVNRDN 207 (302)
T ss_dssp ETTSCCC-EEEESSCC--CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEECS---CEE-EEEEEETTEEEEEEGGGTT
T ss_pred ECCCCCe-EEEeCCCc--eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeCC---Ccc-ceeeecCCEEEEEEcCCCc
Confidence 5554332 22322222 345677666666655677899988876654444432 222 23558898887665443
Q ss_pred cEEEEeCCCC
Q 008496 421 TAKIWNMKQD 430 (563)
Q Consensus 421 ~i~iwd~~~~ 430 (563)
.|..-++...
T Consensus 208 ~I~~~~ldG~ 217 (302)
T 3s25_A 208 AIVHVNINNP 217 (302)
T ss_dssp EEEEECSSSC
T ss_pred EEEEEECCCC
Confidence 3444444443
No 351
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=85.21 E-value=2.7 Score=42.62 Aligned_cols=92 Identities=13% Similarity=0.172 Sum_probs=63.9
Q ss_pred CCCcEEEEEEeCCCeEEEEeCCC------Ce-------EEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCC-
Q 008496 458 PNQQLILASASFDSTVKLWDVEL------GK-------LLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEG- 523 (563)
Q Consensus 458 ~~~~~~l~s~s~dg~i~iwd~~~------~~-------~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~- 523 (563)
|+.+.++++|-.+.++.++|++. ++ .+....- ...-...+|.++|....|--.|..|.-|++...
T Consensus 332 PDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~-GlGPlHt~Fd~~G~aYTtlfidSqvvkWni~~a~ 410 (638)
T 3sbq_A 332 SDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPEL-GLGPLHTTFDGRGNAYTTLFIDSQVVKWNMEEAV 410 (638)
T ss_dssp TTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBC-CSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHH
T ss_pred CCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccC-CCcccEEEECCCCceEeeeeecceEEEEeccHHH
Confidence 44457888888999999999873 11 1223332 234577899999966667778999999999753
Q ss_pred ---------eeEEEEecCCCEEEEEE------cCCCCEEEEE
Q 008496 524 ---------KIVKTYTGNGGIFEVCW------NKEGDKIAAC 550 (563)
Q Consensus 524 ---------~~~~~~~~~~~i~~l~w------~~~g~~la~~ 550 (563)
.++....-+-.+-.+.- .+||++|++.
T Consensus 411 ~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~l 452 (638)
T 3sbq_A 411 RAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVAL 452 (638)
T ss_dssp HHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEE
T ss_pred HHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEe
Confidence 45666655555555544 7889988876
No 352
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=84.37 E-value=0.28 Score=35.85 Aligned_cols=31 Identities=29% Similarity=0.402 Sum_probs=28.3
Q ss_pred cchhhhhHHHHHhcCCceehhccccccCCcc
Q 008496 7 EELNYLVFRYLQESGLLHSAFVLGYEAGINK 37 (563)
Q Consensus 7 ~evN~Li~rYlqE~g~~~sA~~~~~E~~~~~ 37 (563)
+|||.=|..||+-+||..++-+|..|..++.
T Consensus 11 eEL~kaI~~YL~~~~~~~~~~alr~e~~~~~ 41 (88)
T 1uuj_A 11 DELNRAIADYLRSNGYEEAYSVFKKEAELDM 41 (88)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHhcCCC
Confidence 7999999999999999999999999977653
No 353
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=83.26 E-value=32 Score=32.73 Aligned_cols=112 Identities=13% Similarity=0.052 Sum_probs=61.7
Q ss_pred EecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCC----
Q 008496 210 ILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE---- 285 (563)
Q Consensus 210 ~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~---- 285 (563)
++...-..-..++|.|+|.+|++-...|.|++++..++.. ..+................|+++|+
T Consensus 26 ~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~-----------~~v~~~~~v~~~g~~GllGia~~Pdf~~~ 94 (347)
T 3das_A 26 TVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRK-----------TELGEVPGVSPSGEGGLLGIALSPDYASD 94 (347)
T ss_dssp EEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCE-----------EEEEECTTCCCBTTBSEEEEEECTTHHHH
T ss_pred EeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcE-----------eeecccCceeecCCCCceeeEeccccccC
Confidence 3333345567999999999888876689898887543321 0111111111122356789999995
Q ss_pred CCEEEEEe--CCCeEEEEEcCC------c---eeE---ee---ccCCCCEEEEEeCCCCCEEEEee
Q 008496 286 GTLLATGS--YDGQARIWSTNG------D---LKC---TL---SKHKGPIFSLKWNKKGDYLLTGS 334 (563)
Q Consensus 286 g~~l~sg~--~dg~i~vw~~~~------~---~~~---~~---~~h~~~V~~l~~~~~~~~l~s~s 334 (563)
+.+.++-+ .++.|.-|...+ . ... .+ ..|. -..|.|.|+|...++.+
T Consensus 95 g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~--g~~l~fgpDG~Lyvt~G 158 (347)
T 3das_A 95 HMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHN--GGRIAFGPDKMLYAGTG 158 (347)
T ss_dssp CEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCC--CCCEEECTTSCEEEECB
T ss_pred CEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCcc--CccccCCCCCCEEEEEC
Confidence 44444322 233444444433 1 111 12 1243 24689999998777644
No 354
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=82.70 E-value=31 Score=32.10 Aligned_cols=235 Identities=7% Similarity=0.009 Sum_probs=117.4
Q ss_pred CCCCEEEEEe--CCCeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCC--------------CcEEEEECCCC
Q 008496 284 GEGTLLATGS--YDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCD--------------KTAIVWDVKTE 347 (563)
Q Consensus 284 ~~g~~l~sg~--~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D--------------~~v~iwd~~~~ 347 (563)
.+|..|.... .++.|...+.+|.....+... .+--++++|.+|+-+... ..|+..++...
T Consensus 23 ~~g~~iy~~n~~d~~~ly~~~~dg~~~~~l~~~----~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~ 98 (302)
T 3s25_A 23 ESDGEVFFSNTNDNGRLYAMNIDGSNIHKLSND----TAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGH 98 (302)
T ss_dssp EETTEEEEEEGGGTTEEEEEETTSCSCEEEEEE----EEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSC
T ss_pred EeCCEEEEEeCCCCceEEEEcCCCCCCEEccCC----ceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCC
Confidence 3555665554 245666667777655544432 133458889888766543 35666677665
Q ss_pred ceeEEeeecccCeEEEecCCCceEEEE---eCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeC-CCcEE
Q 008496 348 EWKQQFEFHSGPTLDVDWRNNVSFATS---STDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD-DVTAK 423 (563)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~-dg~i~ 423 (563)
+... + ...+...+....+..+.+. ..+..|+..++...... .+..+.. .+++|+++.|.-.+. ...|.
T Consensus 99 ~~~~-l--~~~~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~-~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy 170 (302)
T 3s25_A 99 GSTV-L--DPDPCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKK-KIKNHYL----FTCNTSDRYFYYNNPKNGQLY 170 (302)
T ss_dssp CCEE-E--ECSCEEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCE-EEESSCC----CCSEEETTEEEEECTTTCCEE
T ss_pred cceE-e--ecCCccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeE-EEeCCCc----eEeeEECCEEEEEeCCCceEE
Confidence 4322 1 1222223333444444443 34556777777654433 3333322 345678888776655 56777
Q ss_pred EEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCC-CeEEEEeCCCCeEEEEecCCCCCEEEEEEcCC
Q 008496 424 IWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD-STVKLWDVELGKLLYSLNGHREPVYSLAFSPT 502 (563)
Q Consensus 424 iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~d-g~i~iwd~~~~~~~~~~~~h~~~i~~l~~spd 502 (563)
.-++..+.....+. +.... .+.|.+. .+..+-..+ ..|..-++..+. ...+.. ..+ ..|+|+
T Consensus 171 ~~~l~g~~~~~l~~---~~~~~-~~~P~g~--------~iy~t~~~~~~~I~~~~ldG~~-~~~Lt~--~~~--~~~~~~ 233 (302)
T 3s25_A 171 RYDTASQSEALFYD---CNCYK-PVVLDDT--------NVYYMDVNRDNAIVHVNINNPN-PVVLTE--ANI--EHYNVY 233 (302)
T ss_dssp EEETTTTEEEEEEC---SCEEE-EEEEETT--------EEEEEEGGGTTEEEEECSSSCC-CEECSC--SCE--EEEEEE
T ss_pred EEECCCCCEEEEeC---CCccc-eeeecCC--------EEEEEEcCCCcEEEEEECCCCC-eEEEeC--CCc--ceEEEC
Confidence 77776654332222 22222 3446654 222232222 345555555332 333332 233 348888
Q ss_pred CCEEEEEeC--CCcEEEEecCCCeeEEEEecCCCEEEEEEcCCCCEEEEEE
Q 008496 503 GEYLASGSL--DKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACF 551 (563)
Q Consensus 503 g~~lasgs~--dg~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~g~~la~~~ 551 (563)
+.+|.-++. .+.|..-++..........+ .+. .+++.+++|....
T Consensus 234 g~~Iy~~~~~~~~~i~~~~~DG~~r~~l~~~--~~~--~i~i~~d~Iy~td 280 (302)
T 3s25_A 234 GSLIFYQRGGDNPALCVVKNDGTGFKELAKG--EFC--NINVTSQYVYFTD 280 (302)
T ss_dssp TTEEEEEECSSSCEEEEEETTSCCCEEEEES--CEE--EEEECSSEEEEEE
T ss_pred CCEEEEEECCCCcEEEEEECCCCccEEeeCC--ccc--eEEEeCCEEEEEE
Confidence 988876543 34555555543222222222 222 4455667776654
No 355
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=63.22 E-value=11 Score=41.64 Aligned_cols=38 Identities=26% Similarity=0.308 Sum_probs=34.1
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEe
Q 008496 493 PVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYT 530 (563)
Q Consensus 493 ~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~ 530 (563)
.|.+++..++..++++-+.|++++||++.+++++.+..
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 56778888899999999999999999999999988864
No 356
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=59.25 E-value=34 Score=35.26 Aligned_cols=57 Identities=14% Similarity=0.176 Sum_probs=40.3
Q ss_pred EEEEEEcCCCCEEEEEeCC------------CcEEEEecCCCeeEEEEec--CCCEEEEEEcCCCCEEEEE
Q 008496 494 VYSLAFSPTGEYLASGSLD------------KSMHIWSLKEGKIVKTYTG--NGGIFEVCWNKEGDKIAAC 550 (563)
Q Consensus 494 i~~l~~spdg~~lasgs~d------------g~v~iw~~~~~~~~~~~~~--~~~i~~l~w~~~g~~la~~ 550 (563)
.-.|+|+|.|.+++.-..+ ..+.+.+..++++.+-+.. ...++.++|+|||+.|.+.
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 4679999999966653322 2466667777776555443 3568999999999988765
No 357
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=58.56 E-value=47 Score=33.93 Aligned_cols=59 Identities=12% Similarity=0.164 Sum_probs=42.3
Q ss_pred CEEEEEEcCCCCEEEEEeC------------CCcEEEEecCCCeeEEEEec--CCCEEEEEEcCCCCEEEEEE
Q 008496 493 PVYSLAFSPTGEYLASGSL------------DKSMHIWSLKEGKIVKTYTG--NGGIFEVCWNKEGDKIAACF 551 (563)
Q Consensus 493 ~i~~l~~spdg~~lasgs~------------dg~v~iw~~~~~~~~~~~~~--~~~i~~l~w~~~g~~la~~~ 551 (563)
....|+|+++|.+.+.-.. .+.|..++..+|++..-+.. ...++.++|+||++.|.++.
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 4578999999987773221 12577777778886655543 24589999999999888764
No 358
>2l1n_A Uncharacterized protein; DUF1823, hypothetical protein, cyanobacteria, structural GEN PSI-biology, protein structure initiative; NMR {Synechococcus elongatus}
Probab=55.76 E-value=4 Score=31.13 Aligned_cols=19 Identities=32% Similarity=0.548 Sum_probs=15.4
Q ss_pred cCccchhhhhHHHHHhcCCcee
Q 008496 4 ITSEELNYLVFRYLQESGLLHS 25 (563)
Q Consensus 4 its~evN~Li~rYlqE~g~~~s 25 (563)
|+-++||=|||.|| ||.--
T Consensus 18 isD~~Vn~LVW~~L---GYr~d 36 (120)
T 2l1n_A 18 LSDAEANALVWQAL---GYVWD 36 (120)
T ss_dssp SCHHHHHHHHHHHH---TCCEE
T ss_pred cCHHHHHHHHHHHh---Ccccc
Confidence 44559999999999 98763
No 359
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=52.80 E-value=1.6e+02 Score=28.08 Aligned_cols=76 Identities=11% Similarity=0.089 Sum_probs=39.4
Q ss_pred CCeEEEEECC--CCCEEEEEeCCC----eEEEEEcCCceeEeec------c--------CCCCEEEEEeCCC--CCEEEE
Q 008496 275 KDVTTLDWNG--EGTLLATGSYDG----QARIWSTNGDLKCTLS------K--------HKGPIFSLKWNKK--GDYLLT 332 (563)
Q Consensus 275 ~~V~~l~~s~--~g~~l~sg~~dg----~i~vw~~~~~~~~~~~------~--------h~~~V~~l~~~~~--~~~l~s 332 (563)
..|.+|++.| .+.+.+ ++..| .|...+-.|..-..+. . +...|.++.+.|. ...|+.
T Consensus 55 ~~v~~i~~dp~~~~~l~~-g~~~g~~g~gl~~s~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~ 133 (394)
T 3b7f_A 55 HTIHHIVQDPREPERMLM-AARTGHLGPTVFRSDDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYA 133 (394)
T ss_dssp SEEEEEEECSSSTTCEEE-EEEC--CCEEEEEESSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEE
T ss_pred CceEEEEECCCCCCeEEE-EecCCCCCccEEEeCCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEEE
Confidence 4699999998 555554 44444 3443322232211111 1 1124778888872 455666
Q ss_pred eeCCCcEEEEECCCCceeE
Q 008496 333 GSCDKTAIVWDVKTEEWKQ 351 (563)
Q Consensus 333 ~s~D~~v~iwd~~~~~~~~ 351 (563)
+...+.|...+-....+..
T Consensus 134 g~~~ggl~~S~DgG~tW~~ 152 (394)
T 3b7f_A 134 GTSPQGLFRSTDHGASWEP 152 (394)
T ss_dssp EEETTEEEEESSTTSBCEE
T ss_pred EecCCcEEEEcCCCCCeEE
Confidence 6666666655433334433
No 360
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=52.55 E-value=17 Score=40.23 Aligned_cols=37 Identities=16% Similarity=0.213 Sum_probs=32.2
Q ss_pred ceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeee
Q 008496 400 EVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDL 436 (563)
Q Consensus 400 ~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~ 436 (563)
.+.+++..++..++++-+.|+++|+|++.+++++.+.
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 4677888888899999999999999999999887653
No 361
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=51.19 E-value=11 Score=42.57 Aligned_cols=38 Identities=26% Similarity=0.308 Sum_probs=32.9
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEe
Q 008496 493 PVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYT 530 (563)
Q Consensus 493 ~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~ 530 (563)
.|.+++..++..++++-+.|++++||++.+++++.+..
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 34556677888999999999999999999999998874
No 362
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=50.36 E-value=26 Score=36.86 Aligned_cols=37 Identities=19% Similarity=0.363 Sum_probs=30.6
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEec
Q 008496 493 PVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG 531 (563)
Q Consensus 493 ~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~ 531 (563)
.|.++.+ +..+|++-+.|.++|+|++++++++.+..-
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 4555555 477999999999999999999999888754
No 363
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=46.70 E-value=2e+02 Score=27.39 Aligned_cols=50 Identities=10% Similarity=0.052 Sum_probs=25.5
Q ss_pred CEEEEEeCCCeEEEEEcC--CceeEee--ccCCCCEEEEEeCC-CCCEEEEeeCCC
Q 008496 287 TLLATGSYDGQARIWSTN--GDLKCTL--SKHKGPIFSLKWNK-KGDYLLTGSCDK 337 (563)
Q Consensus 287 ~~l~sg~~dg~i~vw~~~--~~~~~~~--~~h~~~V~~l~~~~-~~~~l~s~s~D~ 337 (563)
..|..|+..| +.+++.+ +..-... ......|.+|.+.| +...|..+...+
T Consensus 23 g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g 77 (394)
T 3b7f_A 23 VMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTG 77 (394)
T ss_dssp CEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC-
T ss_pred CEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCC
Confidence 3566777777 4444432 2222111 12235689999998 233444454444
No 364
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=41.63 E-value=19 Score=40.81 Aligned_cols=37 Identities=16% Similarity=0.213 Sum_probs=31.0
Q ss_pred ceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeee
Q 008496 400 EVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDL 436 (563)
Q Consensus 400 ~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~ 436 (563)
.+.+++..++..++++-+.|+++|||++.++.++.+.
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~ 275 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 275 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEee
Confidence 4456667788899999999999999999999887653
No 365
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=40.35 E-value=38 Score=35.65 Aligned_cols=35 Identities=17% Similarity=0.450 Sum_probs=28.5
Q ss_pred ceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeee
Q 008496 400 EVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDL 436 (563)
Q Consensus 400 ~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~ 436 (563)
.|.++.+ +..++++-+.|.++|+|++++++++.+.
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~ 257 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDY 257 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEee
Confidence 4666555 4779999999999999999999887654
No 366
>2d68_A FOP, FGFR1OP; alpha helical bundle, dimer, cell cycle; 1.60A {Homo sapiens}
Probab=37.48 E-value=10 Score=27.30 Aligned_cols=29 Identities=24% Similarity=0.143 Sum_probs=26.4
Q ss_pred hhhhhHHHHHhcCCceehhccccccCCcc
Q 008496 9 LNYLVFRYLQESGLLHSAFVLGYEAGINK 37 (563)
Q Consensus 9 vN~Li~rYlqE~g~~~sA~~~~~E~~~~~ 37 (563)
||=||==|||=.||.||.-+|+-|++..+
T Consensus 21 i~~LVrEyLef~~l~~TlsVf~pEs~l~~ 49 (82)
T 2d68_A 21 VASLVAEFLQFFNLDFTLAVFQPETSTLQ 49 (82)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTCC-
T ss_pred HHHHHHHHHHHcCCcchHHhhhhccCCCC
Confidence 68899999999999999999999999863
No 367
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=33.79 E-value=4e+02 Score=27.12 Aligned_cols=42 Identities=17% Similarity=0.165 Sum_probs=29.0
Q ss_pred CCCCEEEEEeCCCCC-EEEEeeCCCc----------------------------EEEEECCCCceeEEeee
Q 008496 314 HKGPIFSLKWNKKGD-YLLTGSCDKT----------------------------AIVWDVKTEEWKQQFEF 355 (563)
Q Consensus 314 h~~~V~~l~~~~~~~-~l~s~s~D~~----------------------------v~iwd~~~~~~~~~~~~ 355 (563)
|-.++....|.-+|+ -++....+++ +.++|-.+++.+..+..
T Consensus 177 ~yt~~~V~DlDGDGkaEIvv~TadGt~dg~g~~ig~~~~dyrn~~g~il~GpEyL~vfdG~TG~~l~~~~~ 247 (591)
T 2zux_A 177 HYTQFMVYDLDGDGKAEVAMKTADGTKDGTGKVIGNANADYRNEQGRVLSGPEYLTVFQGSTGKELVTANF 247 (591)
T ss_dssp TSCCCEEECSSSSSSCEEEEEECTTCBCTTSCBCSSTTCCCBCTTSCBCSSCCEEEEEETTTCCEEEEEEC
T ss_pred ccCceeEEEcCCCCcceEEEEccCCcccCCceEecccccccccccceeecCCcEEEEEeCCCCCEEecccC
Confidence 445666777777774 3666656655 78899888888776654
No 368
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=32.85 E-value=16 Score=26.96 Aligned_cols=50 Identities=16% Similarity=0.187 Sum_probs=34.6
Q ss_pred CcCccchhhhhHHHHHhcCC-ceehhccccccCCccCCCCCCCCCchhHHHHHHhhhee
Q 008496 3 SITSEELNYLVFRYLQESGL-LHSAFVLGYEAGINKCNIDGNLVPPRALITFVQKGLQY 60 (563)
Q Consensus 3 ~its~evN~Li~rYlqE~g~-~~sA~~~~~E~~~~~~~~~~~~ip~gaLv~~~qKgl~y 60 (563)
.||.+| ++||+||.|+|- ..+.=.+..+.++++.- =.++|=.|.+|||..
T Consensus 17 ~Lt~~q--~~Vl~~I~~~g~~gi~qkeLa~~~~l~~~t------vt~iLk~LE~kglIk 67 (91)
T 2dk5_A 17 GSDNQE--KLVYQIIEDAGNKGIWSRDVRYKSNLPLTE------INKILKNLESKKLIK 67 (91)
T ss_dssp CSCSSH--HHHHHHHHHHCTTCEEHHHHHHHTTCCHHH------HHHHHHHHHHTTSEE
T ss_pred CCCHHH--HHHHHHHHHcCCCCcCHHHHHHHHCCCHHH------HHHHHHHHHHCCCEE
Confidence 356655 799999999886 45555565555554332 257888999999855
No 369
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=31.02 E-value=3.3e+02 Score=25.35 Aligned_cols=102 Identities=13% Similarity=0.087 Sum_probs=0.0
Q ss_pred CCcEEEEEEeCCCeEEEEeCCC-------CeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecC----------
Q 008496 459 NQQLILASASFDSTVKLWDVEL-------GKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLK---------- 521 (563)
Q Consensus 459 ~~~~~l~s~s~dg~i~iwd~~~-------~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~---------- 521 (563)
....+++..+.+|.|+--.+.. |.....+.. ...+..+........|+..+..|.+..+.+.
T Consensus 107 ~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~ 185 (327)
T 3uc1_A 107 TDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRA 185 (327)
T ss_dssp TSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTT
T ss_pred CCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcC
Q ss_pred -CCeeEEEEecCCCEEEEEEcCCCCEEEEEECCCeEEEEEe
Q 008496 522 -EGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDF 561 (563)
Q Consensus 522 -~~~~~~~~~~~~~i~~l~w~~~g~~la~~~~~~~v~v~~~ 561 (563)
.|...-.+.....|.++..-+++..|...+.+|.+....+
T Consensus 186 a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l 226 (327)
T 3uc1_A 186 TSGVQGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAI 226 (327)
T ss_dssp SBCEESSCCCTTCCEEEEEECCTTCEEEEEETTSEEEEEEG
T ss_pred CCCeeeecCCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEH
No 370
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=28.95 E-value=2.1e+02 Score=29.40 Aligned_cols=38 Identities=24% Similarity=0.261 Sum_probs=26.4
Q ss_pred eEEEEeCCCCeEEEEecCC-CCCEEEEEEcCCCCEEEEE
Q 008496 472 TVKLWDVELGKLLYSLNGH-REPVYSLAFSPTGEYLASG 509 (563)
Q Consensus 472 ~i~iwd~~~~~~~~~~~~h-~~~i~~l~~spdg~~lasg 509 (563)
.+.+.+..+++....+.+. ...++.++|+||++.|.+.
T Consensus 510 ~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 510 QMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred eEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 3455566667765555544 3568999999999887654
No 371
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=27.33 E-value=2e+02 Score=29.39 Aligned_cols=38 Identities=24% Similarity=0.261 Sum_probs=26.9
Q ss_pred eEEEEeCCCCeEEEEecCC-CCCEEEEEEcCCCCEEEEE
Q 008496 472 TVKLWDVELGKLLYSLNGH-REPVYSLAFSPTGEYLASG 509 (563)
Q Consensus 472 ~i~iwd~~~~~~~~~~~~h-~~~i~~l~~spdg~~lasg 509 (563)
.|..++..+++....+.+. ...++.++||||++.|.++
T Consensus 510 ~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 510 QMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred eEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEE
Confidence 5666677777765555432 3458999999999888654
No 372
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=26.85 E-value=4.6e+02 Score=25.75 Aligned_cols=51 Identities=16% Similarity=0.279 Sum_probs=34.8
Q ss_pred CeEEEEECCCCC-EEEEEeCCCeEEEEEcCCcee----Eeec---------cCCCCEEEEEeCCC
Q 008496 276 DVTTLDWNGEGT-LLATGSYDGQARIWSTNGDLK----CTLS---------KHKGPIFSLKWNKK 326 (563)
Q Consensus 276 ~V~~l~~s~~g~-~l~sg~~dg~i~vw~~~~~~~----~~~~---------~h~~~V~~l~~~~~ 326 (563)
.-+.|+|.|+|. .|+++...|.|++++.++... ..+. ........|+|+|+
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~ 79 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN 79 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence 357899999996 455567889999998665421 1111 11356789999996
No 373
>1xkm_A Distinctin chain A; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} SCOP: j.4.1.6
Probab=23.41 E-value=54 Score=16.72 Aligned_cols=15 Identities=47% Similarity=0.620 Sum_probs=11.0
Q ss_pred CCCCch--hHHHHHHhh
Q 008496 43 NLVPPR--ALITFVQKG 57 (563)
Q Consensus 43 ~~ip~g--aLv~~~qKg 57 (563)
..|||| |||.-+.|-
T Consensus 3 revppgftaliktlrkc 19 (26)
T 1xkm_A 3 REVPPGFTALIKTLRKC 19 (26)
T ss_dssp TCSCHHHHHHHHHHHHH
T ss_pred CcCCCcHHHHHHHHHhc
Confidence 368988 788777764
No 374
>2zyz_A Putative uncharacterized protein PAE0789; crenarchaea, heterotetramer, RNA PROC endonuclease, hydrolase, tRNA processing; 1.70A {Pyrobaculum aerophilum}
Probab=22.43 E-value=49 Score=25.62 Aligned_cols=51 Identities=20% Similarity=0.228 Sum_probs=34.3
Q ss_pred cchhhhhHHHHHhcCCceehhcccccc-CCccCC------CCCCCCCchhHHHHHHhh
Q 008496 7 EELNYLVFRYLQESGLLHSAFVLGYEA-GINKCN------IDGNLVPPRALITFVQKG 57 (563)
Q Consensus 7 ~evN~Li~rYlqE~g~~~sA~~~~~E~-~~~~~~------~~~~~ip~gaLv~~~qKg 57 (563)
+-+-|.|||.|.|-||-.....|.... ...... -....+|+..|+..+..+
T Consensus 22 ~~l~y~VYkDLR~RG~~vk~rvY~~~~pg~~hs~ylV~vl~e~~~i~~~~L~~~vRla 79 (116)
T 2zyz_A 22 DVLQEQVFKDLKSRGFKIIEQLDDKIFIAEKKERYLFYVMVEGVEVTIQTLLSVINMG 79 (116)
T ss_dssp CHHHHHHHHHHHTTTCEEEEEEETTEEEEESSSEEEEEEEETTCCBCHHHHHHHHHHH
T ss_pred cceeeHHHHHHHHCCCcccEEEcCCCCCCCCcccEEEEEecCCCccCHHHHHHHHHHh
Confidence 445599999999999999996665521 011111 014578999999887665
No 375
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A
Probab=22.30 E-value=18 Score=23.92 Aligned_cols=30 Identities=17% Similarity=0.133 Sum_probs=21.9
Q ss_pred HHHHHhcC--CceehhccccccCCccCCCCCCCCCchhHHH
Q 008496 14 FRYLQESG--LLHSAFVLGYEAGINKCNIDGNLVPPRALIT 52 (563)
Q Consensus 14 ~rYlqE~g--~~~sA~~~~~E~~~~~~~~~~~~ip~gaLv~ 52 (563)
..+|+++| |+.|..+|.. + ...|||-|.+.
T Consensus 25 ~~cL~~n~Wd~~~A~~~F~~------~---~~~IP~eAF~~ 56 (57)
T 2jp7_A 25 FMLAEQSNWNYEVAIKGFQS------S---MNGIPREAFVQ 56 (57)
T ss_dssp HHHHHHTTTCSHHHHHHHHH------S---TTTSCHHHHTT
T ss_pred HHHHHHcCCCHHHHHHHHHH------H---HcCCCHHHhcc
Confidence 36788888 7788888865 1 24699998763
No 376
>1dum_A Magainin 2; antibiotic, dimer, amphipathic helix, membrane, vesicle, bilayer, antimicrobial protein; NMR {Synthetic} SCOP: j.4.1.1 PDB: 2mag_A
Probab=21.72 E-value=14 Score=18.91 Aligned_cols=12 Identities=42% Similarity=0.348 Sum_probs=9.5
Q ss_pred Cceehhcccccc
Q 008496 22 LLHSAFVLGYEA 33 (563)
Q Consensus 22 ~~~sA~~~~~E~ 33 (563)
|-|||-.|++.|
T Consensus 5 ylhsakkfgkaw 16 (26)
T 1dum_A 5 YLHSAKKFGKAW 16 (26)
T ss_dssp TTTTHHHHHHHH
T ss_pred HHHHHHHHhHHH
Confidence 668888888776
No 377
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=21.63 E-value=4.4e+02 Score=23.67 Aligned_cols=139 Identities=15% Similarity=0.043 Sum_probs=77.0
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCc------eeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCC---
Q 008496 409 TGSLLASCSDDVTAKIWNMKQDK------YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE--- 479 (563)
Q Consensus 409 ~~~~las~s~dg~i~iwd~~~~~------~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~--- 479 (563)
+...++..+.+|.++-..+..-. ....++. ...+..+...... + .++..+..|.+..++..
T Consensus 79 ~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lke-gD~l~~~~~~~~~-------~--~ill~T~~G~~~r~~~~eip 148 (276)
T 3no0_A 79 FGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLTE-GDEVVSIASSVDE-------T--HILLFTKKGRVARFSVREVP 148 (276)
T ss_dssp SCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCCCT-TCCEEEEEECCSS-------C--EEEEEETTSEEEEEEGGGSC
T ss_pred CCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecCC-CCEEEEEEEeCCC-------C--EEEEEECCCEEEEEEhhhCC
Confidence 45788899999999988754321 1112222 2334444332211 1 35556778888777642
Q ss_pred ------CCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCC-------CeeEEEEecCCCEEEEEEcCCCCE
Q 008496 480 ------LGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKE-------GKIVKTYTGNGGIFEVCWNKEGDK 546 (563)
Q Consensus 480 ------~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~-------~~~~~~~~~~~~i~~l~w~~~g~~ 546 (563)
.|.....+.. ...|.++...+++.+|+..+..|.++...+.. ++-+..+...+.+..+.--.+.+.
T Consensus 149 ~~gR~a~Gv~~i~L~~-~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i~~~~~lv~~~~~~~~~~ 227 (276)
T 3no0_A 149 PSTPGARGVQGIKLEK-NDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVSGTKDTLVDLIPIKEEVE 227 (276)
T ss_dssp BCCTTCCCEECCCCCT-TCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECCCSSSCEEEEEEESSEEE
T ss_pred CcCCCCCCEEEEccCC-CCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEEcCCCcEEEEEEeCCCCE
Confidence 1223223332 24465655555667888899999999888643 222333333344444332233446
Q ss_pred EEEEECCCeEEE
Q 008496 547 IAACFANHTVCV 558 (563)
Q Consensus 547 la~~~~~~~v~v 558 (563)
++..+.+|.+..
T Consensus 228 i~~~t~~G~~ir 239 (276)
T 3no0_A 228 LLITTKNGKAFY 239 (276)
T ss_dssp EEEEETTSCEEE
T ss_pred EEEEcCCCeEEE
Confidence 666667777665
Done!