BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 008498
         (563 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2WE3|A Chain A, Ebv Dutpase Inactive Mutant Deleted Of Motif V
          Length = 264

 Score = 30.8 bits (68), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 4/54 (7%)

Query: 298 ESVRPDQLRLKSLEKRYSFASSDEQKVVVNQPRWSGGILDIWNDISLAY-LSLF 350
            ++RP +L++     RY+    +E K  +N P++ G   D+  D+SL   L+LF
Sbjct: 103 STLRPSELKIHLAAFRYATPQMEEDKGPINHPQYPG---DVGLDVSLPKDLALF 153


>pdb|2WE0|A Chain A, Ebv Dutpase Mutant Cys4ser
          Length = 286

 Score = 30.8 bits (68), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 4/53 (7%)

Query: 299 SVRPDQLRLKSLEKRYSFASSDEQKVVVNQPRWSGGILDIWNDISLAY-LSLF 350
           ++RP +L++     RY+    +E K  +N P++ G   D+  D+SL   L+LF
Sbjct: 104 TLRPSELKIHLAAFRYATPQMEEDKGPINHPQYPG---DVGLDVSLPKDLALF 153


>pdb|2BSY|A Chain A, Epstein Barr Virus Dutpase
 pdb|2BT1|A Chain A, Epstein Barr Virus Dutpase In Complex With A,B-Imino Dutp
          Length = 278

 Score = 30.4 bits (67), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 4/53 (7%)

Query: 299 SVRPDQLRLKSLEKRYSFASSDEQKVVVNQPRWSGGILDIWNDISLAY-LSLF 350
           ++RP +L++     RY+    +E K  +N P++ G   D+  D+SL   L+LF
Sbjct: 96  TLRPSELKIHLAAFRYATPQMEEDKGPINHPQYPG---DVGLDVSLPKDLALF 145


>pdb|2W3Y|A Chain A, Structure Of The Evf Virulence Factor
 pdb|2W3Y|B Chain B, Structure Of The Evf Virulence Factor
          Length = 283

 Score = 29.3 bits (64), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 3/35 (8%)

Query: 144 VLTGMLNKAIPRKSQR---DVWFEVNNQILNALFT 175
           V +  +NK  P   ++   D+W EV+NQ++ A FT
Sbjct: 73  VASAAVNKKAPSNKEKYHYDIWKEVSNQLIPAFFT 107


>pdb|2WE2|A Chain A, Ebv Dutpase Double Mutant Gly78asp-Asp131ser With Dump
          Length = 286

 Score = 29.3 bits (64), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 5/90 (5%)

Query: 250 RPAIGVGICISVAIGAPAFAGVYSMMSPLGKDYDSQRDEEAQVPITTGESVRPDQLRLKS 309
           RP  G G+ +  +   P    V S +  +  DY  +     Q       ++RP +L++  
Sbjct: 59  RPPEGHGLMLWGSTSRP----VTSHVGIIDPDYTGELRLILQNQRRYNSTLRPSELKIHL 114

Query: 310 LEKRYSFASSDEQKVVVNQPRWSGGI-LDI 338
              RY+    +E K  +N P++ G + LD+
Sbjct: 115 AAFRYATPQMEEDKGPINHPQYPGSVGLDV 144


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.137    0.426 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,848,852
Number of Sequences: 62578
Number of extensions: 609795
Number of successful extensions: 1068
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1068
Number of HSP's gapped (non-prelim): 6
length of query: 563
length of database: 14,973,337
effective HSP length: 104
effective length of query: 459
effective length of database: 8,465,225
effective search space: 3885538275
effective search space used: 3885538275
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)