BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008498
(563 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9M815|PCR8_ARATH Protein PLANT CADMIUM RESISTANCE 8 OS=Arabidopsis thaliana GN=PCR8
PE=1 SV=2
Length = 190
Score = 40.0 bits (92), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 58/150 (38%), Gaps = 38/150 (25%)
Query: 316 FASSDEQKVVVN----QPRWSGGILDIWNDISLAYLSLFCTFCVFGWNMERLGFGNMYVH 371
FA + Q+ VN +P WS G+ D D + A L+ FG E + G M
Sbjct: 35 FAPPNYQQANVNLSVGRP-WSTGLFDCQADQANAVLTTIVPCVTFGQIAEVMDEGEMTCP 93
Query: 372 IATFILFCMAPFWIFTLAAVNIDNEAAREALSVTGIILCLFGLLYGGFWRIQLRKRFNLP 431
+ TF+ M P LC ++ G +R ++R++FNL
Sbjct: 94 LGTFMYLLMMP-------------------------ALCSHWVM-GSKYREKMRRKFNLV 127
Query: 432 AYNFCCGHPAISDCTLWLCCCWCTLAQEAR 461
+ SDC + C C+L QE R
Sbjct: 128 EAPY-------SDCASHVLCPCCSLCQEYR 150
>sp|Q8S8T8|PCR10_ARATH Protein PLANT CADMIUM RESISTANCE 10 OS=Arabidopsis thaliana
GN=PCR10 PE=2 SV=1
Length = 190
Score = 39.7 bits (91), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 23/142 (16%)
Query: 292 VPITTGESVRPDQLRLKSLEKRYSFASSDEQKVVVNQPRWSGGILDIWNDISLAYLSLFC 351
+P+T ++ + +LE S ++ D+ + +WS GI ++D+ + LFC
Sbjct: 14 IPLTQSDADTEVETTTPNLEIAVSESTKDDPR------QWSSGICACFDDMQSCCVGLFC 67
Query: 352 TFCVFGWNMERLGFGNMYVHIATFILFCMAPFWIFTLAAVNIDNEAAREALSVTGIILCL 411
+FG N E LG G TF C+ + A VN + G +L L
Sbjct: 68 PCYIFGKNAELLGSG-------TFAGPCLT--HCISWALVNTIC-----CFATNGALLGL 113
Query: 412 FGLL---YGGFWRIQLRKRFNL 430
G Y +R LR ++NL
Sbjct: 114 PGCFVSCYACGYRKSLRAKYNL 135
>sp|A8EVZ3|RPOC_ARCB4 DNA-directed RNA polymerase subunit beta' OS=Arcobacter butzleri
(strain RM4018) GN=rpoC PE=3 SV=1
Length = 1511
Score = 35.8 bits (81), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 219 AHMMVVVILLNLNCFAQYALC----GLNVGYRRSDRPAIGVGICISVAIGAPA 267
A + VVI L C + LC GLN+G +R +P VG+ + +IG P
Sbjct: 865 AEVKSVVIRTPLTCKVENGLCSKCYGLNLGEQRKAKPGEAVGVVAAQSIGEPG 917
>sp|B4FF80|CNR5_MAIZE Cell number regulator 5 OS=Zea mays GN=CNR5 PE=2 SV=1
Length = 184
Score = 34.7 bits (78), Expect = 1.9, Method: Composition-based stats.
Identities = 45/174 (25%), Positives = 67/174 (38%), Gaps = 30/174 (17%)
Query: 297 GESVRPDQLRLKSLEKRYSFASSDEQ------KVVVNQPRWSGGILDIWNDISLAYLSLF 350
G V P + L SL+ + E+ K+ + +WS GI ++D +
Sbjct: 5 GSYVPPQYIPLYSLDTEEDRVPAVEENHATRPKLNQDPTQWSSGICACFDDPQSCCIGAI 64
Query: 351 CTFCVFGWNMERLGFGNMYVHIATFILFCMAPFWIFTLAAVNIDNEAAREALSVTGIILC 410
C +FG N + LG G + T CM + +L V G++L
Sbjct: 65 CPCFLFGKNAQFLGSGTLAGSCTT---HCMLWGLLTSLCCV-----------FTGGLVLA 110
Query: 411 LFG---LLYGGFWRIQLRKRFNLPAYNFCCGHPAISDCTLWLCCCWCTLAQEAR 461
+ G Y +R LR ++NLP CG D T L C C + QE R
Sbjct: 111 VPGSAVACYACGYRSALRTKYNLPEAP--CG-----DLTTHLFCHLCAICQEYR 157
>sp|P35074|RPB1_CAEBR DNA-directed RNA polymerase II subunit RPB1 OS=Caenorhabditis
briggsae GN=rpb-1 PE=3 SV=2
Length = 1853
Score = 34.7 bits (78), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Query: 500 PNSPNVNSSS---TPKKSIGNPPSPSRFSKEYYSPERQLYAIEEPSAKGKDETMSPPAPS 556
P SP + SS TP NP SP FS YSP Y+ PS SP +P+
Sbjct: 1747 PTSPQYSPSSPTYTPSSPTYNPTSPRAFSSPQYSPTSPTYSPTSPSYTPSSPQYSPTSPT 1806
>sp|P16356|RPB1_CAEEL DNA-directed RNA polymerase II subunit RPB1 OS=Caenorhabditis elegans
GN=ama-1 PE=1 SV=3
Length = 1856
Score = 34.7 bits (78), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Query: 500 PNSPNVNSSS---TPKKSIGNPPSPSRFSKEYYSPERQLYAIEEPSAKGKDETMSPPAPS 556
P SP + SS TP NP SP FS YSP Y+ PS SP +P+
Sbjct: 1750 PTSPQYSPSSPTYTPSSPTYNPTSPRGFSSPQYSPTSPTYSPTSPSYTPSSPQYSPTSPT 1809
>sp|Q9LS43|PCR7_ARATH Protein PLANT CADMIUM RESISTANCE 7 OS=Arabidopsis thaliana GN=PCR7
PE=2 SV=1
Length = 133
Score = 33.9 bits (76), Expect = 4.0, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 9/58 (15%)
Query: 406 GIILCLFGL--LYGGFWRIQLRKRFNLPAYNFCCGHPAISDCTLWLCCCWCTLAQEAR 461
G+I C+ GL L+ +R ++R +F LP SDC C C L QE R
Sbjct: 52 GLICCVVGLPCLFSCTYRTKIRSKFGLP-------ESPTSDCVTHFFCECCALCQEHR 102
>sp|P33235|FLGK_ECOLI Flagellar hook-associated protein 1 OS=Escherichia coli (strain
K12) GN=flgK PE=3 SV=3
Length = 547
Score = 32.7 bits (73), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 14 EESNDTQAKNQGQIPLDISSSRKTLLSGEKPGGRSVSMFSSIPNRIRLLKFGSAS--NKF 71
E++ D+ +N GQ LD+ S+ KT+ + S+ S I N+ LK SA+ N
Sbjct: 439 EDAGDSDNRN-GQALLDLQSNSKTVGGAKSFNDAYASLVSDIGNKTATLKTSSATQGNVV 497
Query: 72 KQIAEQRDEIS 82
Q++ Q+ IS
Sbjct: 498 TQLSNQQQSIS 508
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.136 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 212,272,705
Number of Sequences: 539616
Number of extensions: 9011259
Number of successful extensions: 22380
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 22344
Number of HSP's gapped (non-prelim): 45
length of query: 563
length of database: 191,569,459
effective HSP length: 123
effective length of query: 440
effective length of database: 125,196,691
effective search space: 55086544040
effective search space used: 55086544040
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)