Query 008498
Match_columns 563
No_of_seqs 262 out of 696
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 04:58:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008498.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008498hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1kil_E Complexin I snare-compl 21.3 37 0.0013 26.1 1.5 11 420-430 39-49 (49)
2 3rk3_E Complexin-1; snare prot 17.0 55 0.0019 26.3 1.6 14 420-433 42-55 (63)
3 3ixz_B Potassium-transporting 15.3 2E+02 0.0067 29.2 5.7 47 123-185 41-88 (290)
4 1l4a_E Synaphin A; snare, snar 15.2 63 0.0022 27.0 1.6 14 420-433 46-59 (79)
5 3vmt_A Monofunctional glycosyl 9.9 2.2E+02 0.0075 28.6 4.0 85 97-183 10-102 (263)
6 2klu_A T-cell surface glycopro 9.7 1.6E+02 0.0054 24.2 2.3 16 134-149 12-27 (70)
7 1jb0_M Photosystem 1 reaction 9.0 1.4E+02 0.0047 21.1 1.5 12 165-176 4-15 (31)
8 2zxe_B Na+,K+-ATPase beta subu 7.6 4.2E+02 0.014 27.0 5.0 56 123-197 37-93 (305)
9 1zbd_B Rabphilin-3A; G protein 7.4 1.2E+02 0.004 27.4 0.7 23 453-478 100-122 (134)
10 4dm9_A Ubiquitin carboxyl-term 7.1 1E+02 0.0034 30.2 0.2 33 158-192 4-39 (228)
No 1
>1kil_E Complexin I snare-complex binding region; helix bound to four helix bundle, membrane protein; 2.30A {Rattus norvegicus} SCOP: h.1.15.1
Probab=21.30 E-value=37 Score=26.12 Aligned_cols=11 Identities=18% Similarity=0.601 Sum_probs=9.4
Q ss_pred HHHHHHHHcCC
Q 008498 420 WRIQLRKRFNL 430 (563)
Q Consensus 420 ~R~qIRkRYgI 430 (563)
.|+.||.||||
T Consensus 39 mRq~IRdKY~i 49 (49)
T 1kil_E 39 MRQGIRDKYGI 49 (49)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHhcCC
Confidence 58889999987
No 2
>3rk3_E Complexin-1; snare proteins, membrane fusion, membrane protein-exocytosis transport protein complex, membrane protein-exocytosis COMP; 3.50A {Homo sapiens} PDB: 3rl0_g
Probab=17.02 E-value=55 Score=26.30 Aligned_cols=14 Identities=14% Similarity=0.361 Sum_probs=10.8
Q ss_pred HHHHHHHHcCCCCC
Q 008498 420 WRIQLRKRFNLPAY 433 (563)
Q Consensus 420 ~R~qIRkRYgIpGS 433 (563)
.|+.||.+|||.--
T Consensus 42 mRQ~IRdKY~ikKk 55 (63)
T 3rk3_E 42 VRQGIRDKYGIKKK 55 (63)
T ss_dssp HHHHHHHHHTCC--
T ss_pred HHHHHHHHhccchh
Confidence 59999999999754
No 3
>3ixz_B Potassium-transporting ATPase subunit beta; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_B 2xzb_B
Probab=15.34 E-value=2e+02 Score=29.17 Aligned_cols=47 Identities=13% Similarity=0.129 Sum_probs=27.0
Q ss_pred hhHHHHHHHHHHHHH-HHHHHHHHhhcccCCCCCCCcCcceEEehHHHHHHHHHhhcccccchh
Q 008498 123 MNMALLAWVICVAVS-GAILFLVLTGMLNKAIPRKSQRDVWFEVNNQILNALFTLMCLYQHPKR 185 (563)
Q Consensus 123 ~g~~~~iy~l~Vvaw-GamLfLlL~g~ln~~~p~~s~R~~WiEi~sQILNALFtv~g~gl~P~R 185 (563)
+-|-+..|+++.+++ +.|++|+.+ |+.-.|+...| + .-.|++..|.-
T Consensus 41 llFYliFY~~LaglFa~~m~v~l~T--ld~~~Pkyqd~---------~-----~~PGL~~~P~~ 88 (290)
T 3ixz_B 41 SLYYVAFYVVMSGIFALCIYVLMRT--IDPYTPDYQDQ---------L-----KSPGVTLRPDV 88 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh--CCCCCCCcccc---------c-----CCCcceecCCC
Confidence 456667777774443 455555544 55444433222 1 45799999973
No 4
>1l4a_E Synaphin A; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=15.24 E-value=63 Score=27.00 Aligned_cols=14 Identities=21% Similarity=0.451 Sum_probs=11.0
Q ss_pred HHHHHHHHcCCCCC
Q 008498 420 WRIQLRKRFNLPAY 433 (563)
Q Consensus 420 ~R~qIRkRYgIpGS 433 (563)
.|+.||.+|||.--
T Consensus 46 mRq~IRdKY~ikKK 59 (79)
T 1l4a_E 46 MRQTIRDKYGLKKK 59 (79)
T ss_dssp HHHHHHHHHTCC--
T ss_pred HHHHHHHHhccccc
Confidence 59999999999865
No 5
>3vmt_A Monofunctional glycosyltransferase; transmembrane, bacterial cell WALL SYNT membrane; HET: LHI; 2.30A {Staphylococcus aureus} PDB: 3vmr_A* 3vms_A 3vmq_A*
Probab=9.92 E-value=2.2e+02 Score=28.61 Aligned_cols=85 Identities=15% Similarity=0.202 Sum_probs=33.6
Q ss_pred cccccccccccHHHHHHHh-hhh-hccchhHHHHHHHHHHHHHHHHHHHHHhhcccCCC-CCCCcCcceE---EehHHHH
Q 008498 97 RLNGVFTRKVDWVSIKKMC-KEW-IRNPMNMALLAWVICVAVSGAILFLVLTGMLNKAI-PRKSQRDVWF---EVNNQIL 170 (563)
Q Consensus 97 ~~~~~~~~k~~w~~~~~~~-~~~-~~tP~g~~~~iy~l~VvawGamLfLlL~g~ln~~~-p~~s~R~~Wi---Ei~sQIL 170 (563)
|-....+|...|.-+-+.- ++| .|-=.++++++-++.+++.|.| .++.+-.|... .+...++.|+ ||...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~kk~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~l~~~~~~r~~v~l~~Ip~~l~ 87 (263)
T 3vmt_A 10 HSSGLVPRGSHMQPVGKPPKKKKSKRILLKILLTILIIIALFIGIM--YFLSTRDNVDELRKIENKSSFVSADNMPEYVK 87 (263)
T ss_dssp -------------------------CCTTHHHHHHHHHHHHHHHHH--HHHHSCSCGGGGGGGGGSTTCCCGGGSCHHHH
T ss_pred cccCcccCCCcccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHH--HHhhccCchhhhhhhhccCCCCCHHHcCHHHH
Confidence 3334445555554443332 122 2223445555555555555544 44443334321 2234667787 5667889
Q ss_pred HHHHHhhc--ccccc
Q 008498 171 NALFTLMC--LYQHP 183 (563)
Q Consensus 171 NALFtv~g--~gl~P 183 (563)
+|+-.+== |+.||
T Consensus 88 ~AvIA~ED~rFy~H~ 102 (263)
T 3vmt_A 88 GAFISMEDERFYNHH 102 (263)
T ss_dssp HHHHHHHCTTTTTSS
T ss_pred HHHHHHHcchhhhCC
Confidence 99877642 55554
No 6
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=9.69 E-value=1.6e+02 Score=24.24 Aligned_cols=16 Identities=19% Similarity=0.441 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHhhcc
Q 008498 134 VAVSGAILFLVLTGML 149 (563)
Q Consensus 134 VvawGamLfLlL~g~l 149 (563)
||..|++.+|+++|++
T Consensus 12 ivlGg~~~lll~~glc 27 (70)
T 2klu_A 12 IVLGGVAGLLLFIGLG 27 (70)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHH
Confidence 6778888888887643
No 7
>1jb0_M Photosystem 1 reaction centre subunit XII; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.19.1 PDB: 3pcq_M*
Probab=8.95 E-value=1.4e+02 Score=21.06 Aligned_cols=12 Identities=25% Similarity=0.307 Sum_probs=9.7
Q ss_pred ehHHHHHHHHHh
Q 008498 165 VNNQILNALFTL 176 (563)
Q Consensus 165 i~sQILNALFtv 176 (563)
.|+||+-|||.-
T Consensus 4 sd~Qi~iAL~~A 15 (31)
T 1jb0_M 4 TDTQVYVALVIA 15 (31)
T ss_dssp CHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 479999999853
No 8
>2zxe_B Na+,K+-ATPase beta subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_B* 3b8e_B*
Probab=7.58 E-value=4.2e+02 Score=26.99 Aligned_cols=56 Identities=21% Similarity=0.230 Sum_probs=32.0
Q ss_pred hhHHHHHHHHHHHHH-HHHHHHHHhhcccCCCCCCCcCcceEEehHHHHHHHHHhhcccccchhhhhhheeeeeCc
Q 008498 123 MNMALLAWVICVAVS-GAILFLVLTGMLNKAIPRKSQRDVWFEVNNQILNALFTLMCLYQHPKRLYHLVLLFRWSP 197 (563)
Q Consensus 123 ~g~~~~iy~l~Vvaw-GamLfLlL~g~ln~~~p~~s~R~~WiEi~sQILNALFtv~g~gl~P~R~~dly~l~rwr~ 197 (563)
+-|-+..|+++.+++ +.|++|+.+ |+.-.|+...| | +-.|++..|.- + -.++.|..
T Consensus 37 llFYliFY~~La~lF~~~m~v~l~t--l~~~~Pk~q~~---------i-----~~PGL~~~P~~--~-~~~I~f~~ 93 (305)
T 2zxe_B 37 FLFYLIFYGCLAGIFIGTIQVLLLT--LSDFEPKYQDR---------V-----APPGLSHAPYA--I-KTEISFSI 93 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT--SCSSSCSCCTT---------T-----CSCCBCCSSCC--S-SSEEEECT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--ccccCCccccC---------C-----CCCeeeEecCC--C-CeEEEEeC
Confidence 456777787665544 445555443 56544543322 1 46799999984 1 23455664
No 9
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=7.36 E-value=1.2e+02 Score=27.38 Aligned_cols=23 Identities=17% Similarity=0.208 Sum_probs=18.6
Q ss_pred hhHHHHHHhhhhccccccCeeeeecc
Q 008498 453 WCTLAQEARTGNAYEIIEDKFCRKQM 478 (563)
Q Consensus 453 cCALcQEaRElk~y~v~~~~f~~~~~ 478 (563)
-|.+||+.||++. ..+.|+.+++
T Consensus 100 ~C~vC~k~rel~~---kSG~Wf~~~~ 122 (134)
T 1zbd_B 100 LCKICLEQREVWK---RSGAWFFKGF 122 (134)
T ss_dssp EEHHHHHHHHHHH---HTSHHHHTSC
T ss_pred echhhHHHHHHHH---hhhHHHHhcC
Confidence 6889999999976 5688877766
No 10
>4dm9_A Ubiquitin carboxyl-terminal hydrolase isozyme L1; ubiquitin hydrolase, ligase, hydrolase, ligase-inhibitor COM; HET: PHQ GME; 2.35A {Homo sapiens} PDB: 3kw5_A 2etl_A* 3irt_A 3kvf_A 3ifw_A 2len_A
Probab=7.14 E-value=1e+02 Score=30.20 Aligned_cols=33 Identities=24% Similarity=0.208 Sum_probs=26.4
Q ss_pred cCcce--EEehHHHHHHHHHhhcccccc-hhhhhhhee
Q 008498 158 QRDVW--FEVNNQILNALFTLMCLYQHP-KRLYHLVLL 192 (563)
Q Consensus 158 ~R~~W--iEi~sQILNALFtv~g~gl~P-~R~~dly~l 192 (563)
.+..| +|-|..|+|.| +-.+|+.| +.|+|+|-|
T Consensus 4 ~~~~w~pLESnP~Vft~l--~~~LGv~~~~~f~DVysL 39 (228)
T 4dm9_A 4 GSMQLKPMEINPEMLNKV--LSRLGVAGQWRFVDVLGL 39 (228)
T ss_dssp --CCCCCCCCSHHHHHHH--HHHTTBCSSEEEEEECCS
T ss_pred CCCceeeccCCHHHHHHH--HHHcCCCCceEEEEeecC
Confidence 56778 69999999997 56777889 999999976
Done!