Query 008498
Match_columns 563
No_of_seqs 262 out of 696
Neff 4.2
Searched_HMMs 13730
Date Mon Mar 25 04:58:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008498.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/008498hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1tzfa_ c.68.1.13 (A:) Glucose 9.6 49 0.0036 27.8 1.4 27 159-188 229-259 (259)
2 d1e0ea_ a.4.10.1 (A:) N-termin 7.0 70 0.0051 22.5 1.0 24 423-458 21-44 (46)
3 d2e74h1 f.23.27.1 (H:3-29) Pet 6.6 1.5E+02 0.011 18.3 2.4 13 126-138 11-23 (27)
4 d2e74f1 f.23.25.1 (F:1-32) Pet 5.6 3.7E+02 0.027 17.1 3.9 23 123-145 6-28 (32)
5 d3b60a2 f.37.1.1 (A:10-328) Mu 4.9 4.1E+02 0.03 21.8 5.2 21 108-129 1-21 (319)
6 d2q7ra1 f.56.1.1 (A:1-139) Ara 4.6 4.3E+02 0.031 21.5 4.9 20 414-433 23-42 (139)
7 d1fo5a_ c.47.1.1 (A:) MJ0307, 4.2 1.8E+02 0.013 20.5 1.9 18 448-465 11-29 (85)
8 d1z5ye1 c.47.1.10 (E:49-184) T 4.0 1.3E+02 0.0095 23.3 0.9 25 439-466 21-45 (136)
9 d1llaa1 a.85.1.1 (A:2-109) Hem 3.9 3.4E+02 0.025 21.6 3.5 36 100-136 61-96 (108)
10 d1jt6a2 a.121.1.1 (A:73-187) M 3.8 4.2E+02 0.031 20.7 4.1 35 198-233 42-87 (115)
No 1
>d1tzfa_ c.68.1.13 (A:) Glucose-1-phosphate cytidylyltransferase RfbF {Salmonella typhimurium [TaxId: 90371]}
Probab=9.60 E-value=49 Score=27.77 Aligned_cols=27 Identities=15% Similarity=0.336 Sum_probs=20.1
Q ss_pred CcceEEehH----HHHHHHHHhhcccccchhhhh
Q 008498 159 RDVWFEVNN----QILNALFTLMCLYQHPKRLYH 188 (563)
Q Consensus 159 R~~WiEi~s----QILNALFtv~g~gl~P~R~~d 188 (563)
..+|.|||+ +.||.|| --+-+||+++|
T Consensus 229 ~g~W~didt~~d~~~~~~~~---~~~~~~~~~~~ 259 (259)
T d1tzfa_ 229 PGFWQPMDTLRDKVYLEGLW---EKGKAPWKTWE 259 (259)
T ss_dssp CSCEEECCSHHHHHHHHHHH---HTTCCTTCCCC
T ss_pred CCEEEECCCHHHHHHHHHHH---HcCCCCCCCcC
Confidence 347999984 6778777 46789998864
No 2
>d1e0ea_ a.4.10.1 (A:) N-terminal Zn binding domain of HIV integrase {Human immunodeficiency virus type 2 [TaxId: 11709]}
Probab=6.97 E-value=70 Score=22.46 Aligned_cols=24 Identities=21% Similarity=0.454 Sum_probs=18.1
Q ss_pred HHHHHcCCCCCCCcCCCCcchhhHHhhcchhhHHHH
Q 008498 423 QLRKRFNLPAYNFCCGHPAISDCTLWLCCCWCTLAQ 458 (563)
Q Consensus 423 qIRkRYgIpGS~~Ccg~~~~~DC~~~~cC~cCALcQ 458 (563)
.+|.+||||-. ...+.+. .|.-||
T Consensus 21 ~L~~~F~lp~~-------vAr~IV~-----~C~~Cq 44 (46)
T d1e0ea_ 21 ELSHKFGIPNL-------VARQIVN-----SCAQCQ 44 (46)
T ss_dssp HHHHHTCCCHH-------HHHHHHH-----HCHHHH
T ss_pred HHHHHcCCCHH-------HHHHHHH-----HHHHhc
Confidence 67999999988 6667666 466666
No 3
>d2e74h1 f.23.27.1 (H:3-29) PetN subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=6.62 E-value=1.5e+02 Score=18.32 Aligned_cols=13 Identities=31% Similarity=0.784 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHH
Q 008498 126 ALLAWVICVAVSG 138 (563)
Q Consensus 126 ~~~iy~l~VvawG 138 (563)
.++-|.+..|+||
T Consensus 11 vvftwsiamvvwg 23 (27)
T d2e74h1 11 VVFTWSIAMVVWG 23 (27)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHhhheeeeEEEc
Confidence 4556777777877
No 4
>d2e74f1 f.23.25.1 (F:1-32) PetM subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=5.56 E-value=3.7e+02 Score=17.11 Aligned_cols=23 Identities=22% Similarity=0.236 Sum_probs=18.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 008498 123 MNMALLAWVICVAVSGAILFLVL 145 (563)
Q Consensus 123 ~g~~~~iy~l~VvawGamLfLlL 145 (563)
+|.+++-+|+..|.||.-..|+-
T Consensus 6 l~aa~lsfglifvgwglgalllk 28 (32)
T d2e74f1 6 LYAALLSFGLIFVGWGLGVLLLK 28 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHhHHHHHHhh
Confidence 57788999999999997655543
No 5
>d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=4.94 E-value=4.1e+02 Score=21.79 Aligned_cols=21 Identities=14% Similarity=0.004 Sum_probs=11.5
Q ss_pred HHHHHHHhhhhhccchhHHHHH
Q 008498 108 WVSIKKMCKEWIRNPMNMALLA 129 (563)
Q Consensus 108 w~~~~~~~~~~~~tP~g~~~~i 129 (563)
|+ ++|..|+|++.-...++..
T Consensus 1 Wk-~~krl~~~~~~~k~~l~~~ 21 (319)
T d3b60a2 1 WQ-TFRRLWPTIAPFKAGLIVA 21 (319)
T ss_dssp CH-HHHHHHHHHGGGHHHHHHH
T ss_pred Ch-HHHHHHHHHHHHHHHHHHH
Confidence 54 4556777876544444333
No 6
>d2q7ra1 f.56.1.1 (A:1-139) Arachidonate 5-lipoxygenase-activating protein, FLAP {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.56 E-value=4.3e+02 Score=21.50 Aligned_cols=20 Identities=5% Similarity=-0.205 Sum_probs=14.6
Q ss_pred hhhhhHHHHHHHHHcCCCCC
Q 008498 414 LLYGGFWRIQLRKRFNLPAY 433 (563)
Q Consensus 414 ~lY~~~~R~qIRkRYgIpGS 433 (563)
..|..+.=.+.|+||+++-.
T Consensus 23 ~~~ls~~Vg~aR~k~~v~~p 42 (139)
T d2q7ra1 23 NGFFAHKVEHESRTQNGRSF 42 (139)
T ss_dssp HHHHHHHHHHHHHHSCCSSC
T ss_pred HHHHHHHHHHHHhCCCCCCC
Confidence 34556677889999999543
No 7
>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=4.20 E-value=1.8e+02 Score=20.49 Aligned_cols=18 Identities=11% Similarity=0.144 Sum_probs=10.7
Q ss_pred hhcchhh-HHHHHHhhhhc
Q 008498 448 WLCCCWC-TLAQEARTGNA 465 (563)
Q Consensus 448 ~~cC~cC-ALcQEaRElk~ 465 (563)
.-||++| .+.+...++..
T Consensus 11 a~wC~~C~~~~p~~~~~~~ 29 (85)
T d1fo5a_ 11 SPMCPHCPAAKRVVEEVAN 29 (85)
T ss_dssp CCCSSCCCTHHHHHHHHHH
T ss_pred CCCCcChHhhhhhcccccc
Confidence 4589888 45555544433
No 8
>d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]}
Probab=3.97 E-value=1.3e+02 Score=23.29 Aligned_cols=25 Identities=16% Similarity=0.112 Sum_probs=14.8
Q ss_pred CCcchhhHHhhcchhhHHHHHHhhhhcc
Q 008498 439 HPAISDCTLWLCCCWCTLAQEARTGNAY 466 (563)
Q Consensus 439 ~~~~~DC~~~~cC~cCALcQEaRElk~y 466 (563)
++.+=|+..+ ||++|- +|.-+++.+
T Consensus 21 k~vvl~Fwat-WC~pC~--~e~p~l~~~ 45 (136)
T d1z5ye1 21 KPVLLNVWAT-WCPTSR--AEHQYLNQL 45 (136)
T ss_dssp SCEEEEEECT-TCHHHH--HHHHHHHHH
T ss_pred CEEEEEEEcC-cCCCcC--ccccchhhh
Confidence 3566666644 999994 444455443
No 9
>d1llaa1 a.85.1.1 (A:2-109) Hemocyanin, N-terminal domain {Horseshoe crab (Limulus polyphemus) [TaxId: 6850]}
Probab=3.86 E-value=3.4e+02 Score=21.63 Aligned_cols=36 Identities=28% Similarity=0.292 Sum_probs=28.1
Q ss_pred ccccccccHHHHHHHhhhhhccchhHHHHHHHHHHHH
Q 008498 100 GVFTRKVDWVSIKKMCKEWIRNPMNMALLAWVICVAV 136 (563)
Q Consensus 100 ~~~~~k~~w~~~~~~~~~~~~tP~g~~~~iy~l~Vva 136 (563)
..|-..-+|....+.+ .|+|.=+|=-+++|++.|++
T Consensus 61 ~~f~~Akd~dtf~~~A-~~aR~~vNe~lFvYAlsvAv 96 (108)
T d1llaa1 61 EVFWEAGDFNDFIEIA-KEARTFVNEGLFAFAAEVAV 96 (108)
T ss_dssp HHHHTCSSHHHHHHHH-HHHTTTSCHHHHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHH-HHHHHHhCHHHHHHHHHHHH
Confidence 3455566777776655 49999999999999999875
No 10
>d1jt6a2 a.121.1.1 (A:73-187) Multidrug binding protein QacR {Staphylococcus aureus [TaxId: 1280]}
Probab=3.79 E-value=4.2e+02 Score=20.65 Aligned_cols=35 Identities=17% Similarity=0.265 Sum_probs=20.9
Q ss_pred cchhHHHHHh-----------ccCCccCCCchhHHHHHHHHHhhHHH
Q 008498 198 KDIAKLRKIY-----------CKNGTYKPHEWAHMMVVVILLNLNCF 233 (563)
Q Consensus 198 ~d~~~Lr~~y-----------~~~g~~~P~ew~hm~~VV~ll~~N~~ 233 (563)
+.+.+||+.| ..+|.+++.+-+ +.+..++-.+|.+
T Consensus 42 ~~i~~lr~~y~~~~~~Ii~eGi~~G~f~~~d~~-~~~~~il~~lng~ 87 (115)
T d1jt6a2 42 EKMNKLENKYIDAYHVIFKEGNLNGEWSINDVN-AVSKIAANAVNGI 87 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTSCCCSCHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCceeccCHH-HHHHHHHHHHHHH
Confidence 3466777766 357889887765 4444444444533
Done!