BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008500
(563 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|C5H8J1|EME1B_ARATH Crossover junction endonuclease EME1B OS=Arabidopsis thaliana
GN=EME1B PE=1 SV=1
Length = 551
Score = 508 bits (1309), Expect = e-143, Method: Compositional matrix adjust.
Identities = 296/573 (51%), Positives = 399/573 (69%), Gaps = 44/573 (7%)
Query: 1 MSEPIILSDEEDQNALETPIQCPYKKIRTGPHPVAPTVLILDDDPTPKKSGFAPSSSSTP 60
M++ I++SD EDQ TP+ K+ R +P++ +LI D DPTP+K P SS TP
Sbjct: 1 MNDHILISDGEDQT---TPLPSLSKRARK--YPIS-AILISDSDPTPQKQ--PPESSFTP 52
Query: 61 SFVAETPMSD-VCIIKCTSRSWLDPQIRVSNSDENLAGSSRLVCLESDNECESGSGRVDL 119
FV ETP+SD ++KC+ S + SN ++ +G R++ L D+E E
Sbjct: 53 IFVPETPLSDDFSVVKCSFGS----RALASNREDKFSGK-RIISL--DSEFEDSPRPETS 105
Query: 120 GQNELVHSDSDDEK------DSEWDLRIGNAGFIQMSGDSS--------SQPTCSEYDMD 165
+NE V + + + SE + + D+S S PT ++
Sbjct: 106 KKNESVLAGLREPRFGLEAETSEAYYKNTRIPETNLDDDTSWMHEVSFRSSPTND--TIE 163
Query: 166 LLQDCPEKENFSMEQMGNLLNTKRSLQVNADNRKSTDEAVGKKKKMTKEERMLFMEEKKK 225
++ D EKE+ S+E++G R ++ EA+ KK++ +KE++ MEEKK
Sbjct: 164 VVSD-QEKEDISVEKIG------RKKKIRTTTLPVPGEALPKKRQ-SKEDKTSAMEEKKL 215
Query: 226 KKEEEKLRKAALKAEAAESKKLQKEMQKWAKGKFAQDSIVTEIDAKVVELGSVGGHLLTR 285
+KE+E+L KAA KAE AE K+L+KE +KW KGK A SIV EID KV+E GS+GG LL+R
Sbjct: 216 RKEQERLEKAASKAEEAERKRLEKEKKKWEKGKLALKSIVAEIDTKVLE-GSIGGLLLSR 274
Query: 286 FAEKRFKYRIASNPIERSIVWTMPVPEHISQISPQGMEIPYILLIYEAEEFCNLVLNESL 345
F+EK + NPIERSIVWTM +PE I+ + PQG +IPY+LL+Y+AEEFCNLV N
Sbjct: 275 FSEKGITIHVGPNPIERSIVWTMTIPEDIAPLFPQGPKIPYLLLVYDAEEFCNLVANGKF 334
Query: 346 MDHVSLVRRHYPSHTICYLTNRLMAHISKKEKERYKNPANNSGWRRPPVEEVLAKLTTHF 405
++ +S V+ YPS+T+C LTN+LM+++ K+EKE YKNP N WRRPP++EVLAKLTTH+
Sbjct: 335 LEIISRVQDRYPSYTVCCLTNKLMSYVKKREKEEYKNPGN---WRRPPIDEVLAKLTTHY 391
Query: 406 FRVHSRQCIDEAEVAEHVVGLTSSLASCQFRKKLTRLSVNANGSLISKDSVDKNLIKKSP 465
+VHSR C+DEAEVAEH+VGLTSSLASCQFRKKLT LSV+ANG+L+SKDSVDK+LIKKSP
Sbjct: 392 VKVHSRHCVDEAEVAEHIVGLTSSLASCQFRKKLTMLSVSANGALVSKDSVDKHLIKKSP 451
Query: 466 WLKALVSIPKVQPRYAIAIWKKYPTMKALLSIYMDPSKSVHEKEFLLKDLTVDGLLGDNR 525
WLKALV+IPKVQPRYA+A+WKKYP+MK+LL +YMD +KSVHEKEFLLKDL V+GL+G +
Sbjct: 452 WLKALVAIPKVQPRYALAVWKKYPSMKSLLKVYMDRNKSVHEKEFLLKDLKVEGLVGGDI 511
Query: 526 KLGEVCSKRVYRILIAQSGSIKTDDIEDGADFF 558
+LGE+CSKR+YR+L++ G+IKTDD+E+GA FF
Sbjct: 512 RLGEICSKRIYRVLMSHDGAIKTDDVENGAAFF 544
>sp|Q84M98|EME1A_ARATH Crossover junction endonuclease EME1A OS=Arabidopsis thaliana
GN=EME1A PE=1 SV=1
Length = 546
Score = 477 bits (1227), Expect = e-133, Method: Compositional matrix adjust.
Identities = 280/579 (48%), Positives = 378/579 (65%), Gaps = 62/579 (10%)
Query: 1 MSEPIILSDEEDQNALETPIQCPYKKIRTGPHPVAPTVLILDDDPTPKKSGFAPSSSSTP 60
MS+ I++SD ED+ TP P K+ R PT L LD +P+ +K P S+STP
Sbjct: 1 MSDFILISDGEDE---ATP--PPSKRARKN---RTPTDLNLDTEPSLQKQ--PPGSASTP 50
Query: 61 SFVAETPMSD-VCIIKCTSRSWLDPQIRVSNSDENLAGSSRLVCLESDNECESGSG---- 115
F+ ETP+SD V ++K + S S+ EN R++ LESD+E G
Sbjct: 51 FFLDETPLSDDVTVLKSSFGS----GTGASSGRENNFFGKRVISLESDSEDSPGPESSKK 106
Query: 116 -------------RVDLGQNELVHSDSDDEKDSEWDLRIGNAGFIQMSGDSSSQPTCSEY 162
R++ G SD++ + D W R A F SS E
Sbjct: 107 YEPVYTDSWKKPCRLEFGS-----SDANSDDDPSWMRR---ASF-----QSSLSKDAIEV 153
Query: 163 DMDLLQDCPEKENFSMEQMGNLLNT--KRSLQVNADNRKSTDEAVGKKKKMTKEERMLFM 220
D D EKE+ +E+MG T +S ++AD+ KKKM+K+E+
Sbjct: 154 DSD-----HEKEDTGVEKMGRKKQTITSKSTSLSADSLP--------KKKMSKDEKTRAA 200
Query: 221 EEKKKKKEEEKLRKAALKAEAAESKKLQKEMQKWAKGK-FAQDSIVTEIDAKVVELGSVG 279
EEKK +KE+EKL+KAA KAE AE KKL++E QKWAK K A IV ID KV+E GS G
Sbjct: 201 EEKKLQKEQEKLQKAASKAEDAEHKKLEREKQKWAKEKDKALKCIVAWIDNKVLE-GSFG 259
Query: 280 GHLLTRFAEKRFKYRIASNPIERSIVWTMPVPEHISQISPQGMEIPYILLIYEAEEFCNL 339
G L++ EK Y + +NPI+RSIVWTM +PE I+Q P G +IPY+LL+YEAE+FCNL
Sbjct: 260 GLLISGLKEKCITYHVTTNPIQRSIVWTMTLPEDIAQSLPLGSKIPYVLLLYEAEDFCNL 319
Query: 340 VLNESLMDHVSLVRRHYPSHTICYLTNRLMAHISKKEKERYKNPANNSGWRRPPVEEVLA 399
V + L+++V VR YPS+T+CYLTN+L+++++KKE+ YK+P N GWR+PP++E +A
Sbjct: 320 VAKKELLENVYRVRDEYPSYTMCYLTNKLLSYVNKKERVEYKDPVNGCGWRKPPIDEAIA 379
Query: 400 KLTTHFFRVHSRQCIDEAEVAEHVVGLTSSLASCQFRKKLTRLSVNANGSLISKDSVDKN 459
KL+TH+ VHSR C+DEAEVA+HVV LTSSLA CQ RKKLTRLSV A+G+L+SK++ DK+
Sbjct: 380 KLSTHYIGVHSRHCVDEAEVADHVVRLTSSLAHCQVRKKLTRLSVYADGTLMSKNAADKH 439
Query: 460 LIKKSPWLKALVSIPKVQPRYAIAIWKKYPTMKALLSIYMDPSKSVHEKEFLLKDLTVDG 519
LI++S WLK LV+IPKVQPRYAIA+ KKYP++K+LL +YMDP+ SVHEKEFLLKDL V+
Sbjct: 440 LIRESIWLKVLVAIPKVQPRYAIAVSKKYPSLKSLLKVYMDPNISVHEKEFLLKDLKVEN 499
Query: 520 LLGDNRKLGEVCSKRVYRILIAQSGSIKTDDIEDGADFF 558
L+G + +GE CSKR+YR+L++ G+IKTDD+E+GA F
Sbjct: 500 LVGRDTSVGEACSKRIYRVLMSLDGTIKTDDVENGAASF 538
>sp|Q0J9J6|EME1_ORYSJ Crossover junction endonuclease EME1 OS=Oryza sativa subsp.
japonica GN=EME1 PE=2 SV=1
Length = 650
Score = 366 bits (939), Expect = e-100, Method: Compositional matrix adjust.
Identities = 192/338 (56%), Positives = 249/338 (73%), Gaps = 2/338 (0%)
Query: 220 MEEKKKKKEEEKLRKAALKAEAAESKKLQKEMQKWAKGKFAQDSIVTEIDAKVVELGSVG 279
+EEKK+K+ E K +K A+KAE AE KKL+KE +KW GK A IV EID+ V+E GSVG
Sbjct: 313 IEEKKQKRLETKKQKEAMKAELAELKKLEKEKKKWESGKLATKCIVAEIDSSVIESGSVG 372
Query: 280 GHLLTRFAEKRFKYRIASNPIERSIVWTMPVPEHISQISPQGMEIPYILLIYEAEEFCNL 339
GHL+ F EK +R+ SN I+ SI+W M +P +Q ++PYIL + +AEEFC+L
Sbjct: 373 GHLVQGFHEKGLCFRVTSNSIKGSILWKMQIPNEFTQDQASTSQVPYILFVLQAEEFCDL 432
Query: 340 VLNESLMDHVSLVRRHYPSHTICYLTNRLMAHISKKEKERY-KNPANNSGWRRPPVEEVL 398
V +L+DHV VRR YP TICY+TN+LM+ I ++E+ +Y K +N++ W+RPPVEE L
Sbjct: 433 VSGGTLLDHVQKVRRQYPEFTICYVTNKLMSFIKRREQNQYNKTTSNSNSWKRPPVEEAL 492
Query: 399 AKLTTHFFRVHSRQCIDEAEVAEHVVGLTSSLASCQFRKKLTRLSVNANGSLISKDSVDK 458
KL TH+ RV SR C DEAEV EH+VGLT SLA+C+FRK LT LSV+ANGS ISK VDK
Sbjct: 493 CKLATHYARVRSRHCTDEAEVTEHIVGLTYSLANCKFRKPLTWLSVHANGSNISKGCVDK 552
Query: 459 NLIKKSPWLKALVSIPKVQPRYAIAIWKKYPTMKALLSIYMDPSKSVHEKEFLLKDLTVD 518
+ IKKS WLK+LV+IP V P AIAI KKYP+M++LL++YMD SKSVHEKE LL+DL ++
Sbjct: 553 DRIKKSAWLKSLVAIPGVSPGQAIAIEKKYPSMRSLLNVYMDDSKSVHEKEHLLEDLRLE 612
Query: 519 GLLGD-NRKLGEVCSKRVYRILIAQSGSIKTDDIEDGA 555
G LGD R+LG CSK+VY IL+AQ+G+ + + GA
Sbjct: 613 GPLGDFKRRLGPACSKKVYTILMAQNGAAEVEVDRRGA 650
>sp|Q0IHN5|EME2_XENTR Probable crossover junction endonuclease EME2 OS=Xenopus tropicalis
GN=eme2 PE=2 SV=1
Length = 503
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 92/418 (22%), Positives = 166/418 (39%), Gaps = 81/418 (19%)
Query: 198 RKSTDEAVGKKKKMTKE---ERMLFMEEKKKKKEEEKLRKAALKAEAAESKKLQKEMQKW 254
+K T E V +++ +E +R L +EK +KKE EK+ + K K L+ +
Sbjct: 98 KKKTPEQVAAEQEQAEEKKRQRELKRQEKAQKKELEKIERERRKETNLALKLLRPDQ--- 154
Query: 255 AKGKFAQDSIVTEIDAKVVE-LGSVGGHLLTRFAEKRFKYRIASNPIERSIVWTMPVPEH 313
GK+ +V ++DA ++E GS R AE + Y I + + +SI W +P
Sbjct: 155 -CGKY----MVVKVDAGLLEDAGSEDVLEALRVAE--YNYSIEPHSVPQSISWRREMPAD 207
Query: 314 ISQISPQGMEI---------------------------PYILLI-YEAEEFCNLVLN--- 342
+ I +GM++ PY + E EE V +
Sbjct: 208 WTCI--EGMDMKEEEEDQLLVLVEPKSYLSSVRTYAQAPYYFCVGNEMEEIPGSVFSIPA 265
Query: 343 ESLMDHVSLVRRHYPSHTICYLTNRLMAHISKKEKERYKNPANNSGWR--RPPVEEVLAK 400
++ V+LV + C +R + S E + + S R R ++E L
Sbjct: 266 KNPHKKVTLVIIGLQEYRWCERLSRQIQRQSLDAAEGRDSNKDQSATRATRQQIQEALVF 325
Query: 401 LTTHFFRVHSRQCIDE-AEVAEHVVGLTSSLASCQFRKKLTRLSVNANGSLIS-KDSVDK 458
L H+ C+D E+ +HV +T S+A FRK + + S S + +
Sbjct: 326 LQLHYN--TEVLCLDTWKELGQHVCAVTKSIAQRPFRKHWEAQTFSFCTSAGSWRGWGPR 383
Query: 459 NLIKKSP--WLKALVSIPKVQPRYAIAIWKKYPTMKALLSIYMDPSKSVHEKEFLLKDLT 516
++ P W + + + +V P A + + YP+ + L+ Y S E+ LL DL
Sbjct: 384 GVLTGLPLTWRRQIQQLNRVSPAMAAVVSQAYPSPQLLMQAY-SACGSDRERMSLLTDLR 442
Query: 517 V-------------------------DGLLGDNRKLGEVCSKRVYRILIAQSGSIKTD 549
+ D + G R++G S+R++ ++ +++ + D
Sbjct: 443 IPQDNNTGVTQKAEDPREVADIAQEGDQVPGRERRIGPDLSRRIWLLMTSKNPELVLD 500
>sp|Q8BJW7|EME1_MOUSE Crossover junction endonuclease EME1 OS=Mus musculus GN=Eme1 PE=1
SV=1
Length = 570
Score = 39.7 bits (91), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 75/335 (22%), Positives = 123/335 (36%), Gaps = 57/335 (17%)
Query: 264 IVTEIDAKVVELGSVGGHLLTRFAEKRFKYRIASNPIERSIVWTMPVPEHISQISPQGME 323
IV +D ++++ GG LL I I RSI W E + ME
Sbjct: 251 IVVVLDPVLLQMEG-GGQLLGALQAMECSCVIEVQAIPRSITWRRRRTELVED-GDDWME 308
Query: 324 IPYILLIYEAEEFCNLVLNESLMDHVSLVRRHYPSHTICYLTNRLMAHISKK------EK 377
P IL++ AE F ++ N + S T+ + A K ++
Sbjct: 309 EPTILVLVLAEVFMSMAYN---LKQASPSSTEKGKETLRSFVTDVTAKTGKALSLVIVDQ 365
Query: 378 ERYKNPANNSGWRRPPVEEVLAKLTTHFFRVHSR-----------------QCIDEA--- 417
E+ P N R+ + AK H R S Q EA
Sbjct: 366 EKCFRPQNPPRRRKSGMANKQAK-AKHQQRQESSTGLMVSRADMEKALVDLQLYTEAQAW 424
Query: 418 ------EVAEHVVGLTSSLASCQFRKKLTRLSVN-------ANGSLISKDSVDKNLIKKS 464
E+A+ T ++A F+K +++ + A G + + LI
Sbjct: 425 MVQSWKELADFTCAFTKAVAEAPFKKLRDQVTFSFFLEKDWAGGMKVDQSGRGLALI--- 481
Query: 465 PWLKALVSIPKVQPRYAIAIWKKYPTMKALLSIYMDPSKSVHEKEFLLKDLTV---DGLL 521
W + + + +V A AI YP+ + L+ Y S E++ LL D+ V +G+
Sbjct: 482 -WRRQIQQLNRVSSEMASAIVDAYPSPQLLVQAYQR-CFSEQERQNLLADIQVRRGEGVT 539
Query: 522 GDNRKLGEVCSKRVYRILIAQSGSIKTDDIEDGAD 556
+R++G S+R+Y Q + + D I D D
Sbjct: 540 ATSRRVGPELSRRIY----LQMTTAQPDLILDSVD 570
>sp|Q6DRN3|NOC3L_DANRE Nucleolar complex protein 3 homolog OS=Danio rerio GN=noc3l PE=2
SV=1
Length = 800
Score = 33.9 bits (76), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 35/53 (66%), Gaps = 2/53 (3%)
Query: 195 ADNRKSTDEAVGKKKKMT-KEERM-LFMEEKKKKKEEEKLRKAALKAEAAESK 245
D +K T++ KKK M+ KE+R L ++K KK EEKL+K L+AEA ESK
Sbjct: 432 VDMKKDTEDTAPKKKFMSFKEKRKNLSRMQRKWKKAEEKLQKELLEAEATESK 484
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.130 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 212,995,582
Number of Sequences: 539616
Number of extensions: 9161690
Number of successful extensions: 46973
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 567
Number of HSP's that attempted gapping in prelim test: 38675
Number of HSP's gapped (non-prelim): 5543
length of query: 563
length of database: 191,569,459
effective HSP length: 123
effective length of query: 440
effective length of database: 125,196,691
effective search space: 55086544040
effective search space used: 55086544040
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 64 (29.3 bits)