Query 008500
Match_columns 563
No_of_seqs 156 out of 238
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 05:01:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008500.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008500hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ziu_B Crossover junction endo 100.0 2.2E-61 7.6E-66 503.4 23.3 289 255-551 14-340 (341)
2 2ziu_A MUS81 protein; helix-ha 100.0 3.8E-36 1.3E-40 308.4 22.8 262 263-545 19-310 (311)
3 2zix_A Crossover junction endo 100.0 9.4E-37 3.2E-41 313.0 -2.0 259 264-545 25-306 (307)
4 2bgw_A XPF endonuclease; hydro 99.6 1.8E-14 6E-19 140.6 20.6 210 262-541 7-216 (219)
5 1j23_A HEF nuclease, ATP-depen 99.1 1.3E-09 4.3E-14 100.7 13.4 132 262-432 3-134 (143)
6 4gfj_A Topoisomerase V; helix- 95.2 0.0064 2.2E-07 64.7 2.0 141 327-498 343-498 (685)
7 1x2i_A HEF helicase/nuclease; 92.0 0.33 1.1E-05 38.3 6.3 63 460-541 6-68 (75)
8 1z00_B DNA repair endonuclease 88.9 0.4 1.4E-05 40.2 4.4 58 462-540 12-70 (84)
9 2a1j_A DNA repair endonuclease 88.6 0.32 1.1E-05 38.4 3.3 52 468-540 4-56 (63)
10 1z00_A DNA excision repair pro 86.7 1.4 4.7E-05 36.5 6.3 62 461-541 12-73 (89)
11 2a1j_B DNA excision repair pro 84.0 1.3 4.4E-05 36.9 5.0 60 462-540 26-85 (91)
12 1kft_A UVRC, excinuclease ABC 80.2 0.67 2.3E-05 37.5 1.8 59 463-540 19-77 (78)
13 1ixr_A Holliday junction DNA h 72.2 6.5 0.00022 37.5 6.5 63 463-542 68-130 (191)
14 1cuk_A RUVA protein; DNA repai 62.8 13 0.00046 35.6 6.6 62 463-541 69-130 (203)
15 2nrt_A Uvrabc system protein C 60.2 6.7 0.00023 38.4 4.0 55 464-539 164-219 (220)
16 1s5l_U Photosystem II 12 kDa e 53.0 3.3 0.00011 37.7 0.4 29 467-495 62-92 (134)
17 3c1y_A DNA integrity scanning 47.8 7.3 0.00025 41.1 2.1 55 467-540 314-368 (377)
18 2ztd_A Holliday junction ATP-d 44.3 51 0.0017 31.9 7.3 66 463-544 83-148 (212)
19 3arc_U Photosystem II 12 kDa e 40.6 7 0.00024 33.5 0.5 20 467-486 25-44 (97)
20 3obv_E Protein diaphanous homo 37.3 49 0.0017 35.4 6.6 12 277-288 428-439 (457)
21 3c65_A Uvrabc system protein C 36.7 7.3 0.00025 38.3 0.0 56 465-540 170-225 (226)
22 2duy_A Competence protein come 32.8 30 0.001 27.3 3.1 23 466-488 25-47 (75)
23 3sjd_D Golgi to ER traffic pro 32.4 45 0.0016 24.8 3.6 18 210-227 13-30 (46)
24 3kyj_B CHEY6 protein, putative 32.0 13 0.00045 31.3 0.8 14 33-46 11-24 (145)
25 3b0x_A DNA polymerase beta fam 30.8 64 0.0022 35.3 6.3 35 465-499 90-126 (575)
26 3zs9_C Golgi to ER traffic pro 29.0 61 0.0021 23.3 3.7 18 210-227 3-20 (38)
27 2w9m_A Polymerase X; SAXS, DNA 24.8 85 0.0029 34.4 5.9 33 466-498 95-128 (578)
28 2pln_A HP1043, response regula 23.0 29 0.001 28.7 1.4 19 347-366 75-94 (137)
29 2owo_A DNA ligase; protein-DNA 21.8 90 0.0031 35.2 5.4 55 467-540 509-565 (671)
30 4efa_G V-type proton ATPase su 21.5 2.2E+02 0.0075 25.1 6.8 39 213-251 17-55 (119)
31 1ois_A DNA topoisomerase I; DN 20.5 35 0.0012 33.5 1.5 25 218-242 100-124 (223)
No 1
>2ziu_B Crossover junction endonuclease EME1; helix-hairpin-helix, alternative splicing, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; 2.70A {Homo sapiens} PDB: 2ziw_B 2zix_B 2ziv_B
Probab=100.00 E-value=2.2e-61 Score=503.43 Aligned_cols=289 Identities=19% Similarity=0.259 Sum_probs=227.0
Q ss_pred hccCCccceEEEEEcccccccCCchHHHHHHHhhCCCeEEEeecCCCceEEEEccCCCCCCCCCCCccccCeEEEEecHH
Q 008500 255 AKGKFAQDSIVTEIDAKVVELGSVGGHLLTRFAEKRFKYRIASNPIERSIVWTMPVPEHISQISPQGMEIPYILLIYEAE 334 (563)
Q Consensus 255 ~k~k~~lK~mvVvID~~lle~~s~GgqLl~~L~~lgv~~~I~s~pIp~sI~WrRkVp~~~~~~~~~~~eEp~VLv~l~ae 334 (563)
++|++|+|+|+|+||++|++ .++|++|++.|+++||+|.|++++||++|+|+|++++ ++ +...|++|+|||++++|+
T Consensus 14 ~~p~eclk~~~v~lD~~ll~-~~~g~~ll~~L~~~~~~~~i~~~~ip~sI~WrRkv~~-~~-d~~~~~~E~~vl~~l~a~ 90 (341)
T 2ziu_B 14 PNSEECLKHIIVVLDPVLLQ-MEGGGQLLGALQTMECRCVIEAQAVPCSVTWRRRAGP-SE-DREDWVEEPTVLVLLRAE 90 (341)
T ss_dssp ----CCGGGCEEEECHHHHT-STTHHHHHHHHHHSSCEEEECCCSSTTEEEEEC-----------CCCBCSCEEEEEEHH
T ss_pred CChHHhcceEEEEEChHHhh-cccHHHHHHHHHhCCCeEEEEecCCCceEEEEEecCC-CC-CcccceEccEEEEEEEHH
Confidence 57899999999999999999 6799999999999999999999999999999999988 43 346788999999999999
Q ss_pred HHHHHHhcC-------------chhHHHHHHHhhCCCCcEEEEeccchHHHHHHhh--hhhcC------------CC--C
Q 008500 335 EFCNLVLNE-------------SLMDHVSLVRRHYPSHTICYLTNRLMAHISKKEK--ERYKN------------PA--N 385 (563)
Q Consensus 335 eFv~lI~d~-------------~L~e~v~rLk~~~P~~kliyLVEGL~~ylrKr~~--~qyk~------------~~--~ 385 (563)
+|++||.++ +|.+||.+|+++||++++||||+||++|+++++. ++|.. .. .
T Consensus 91 eF~~~v~~~~~~~~~~~~~~~~tL~~~v~~l~~~~p~~~~~llI~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (341)
T 2ziu_B 91 AFVSMIDNGKQGSLDSTMKGKETLQGFVTDITAKTAGKALSLVIVDQEKCFSAQNPPRRGKQGANKQTKKQQQRQPEASI 170 (341)
T ss_dssp HHHHHHHCCC------------CCTHHHHHHHHHHTSCCEEEEEECCC--------------------------------
T ss_pred HHHHHHhhcccccccccccccchHHHHHHHHHhhCCCCeEEEEEecHHHHHHhhhhhhhhhhhhcccccccccccccCCC
Confidence 999999983 8999999999999999999999999999985332 12210 00 0
Q ss_pred CCCCCCCcHHHHHHHHHHhhceeEEEEcCCHHHHHHHHHHHHHHHHhccccccccccccccCCceecc---Cccc---cC
Q 008500 386 NSGWRRPPVEEVLAKLTTHFFRVHSRQCIDEAEVAEHVVGLTSSLASCQFRKKLTRLSVNANGSLISK---DSVD---KN 459 (563)
Q Consensus 386 ~~~~~rp~VEeALlqLQl~~~~Vh~~~~~d~~Eta~~I~~lTKaIA~~PyKk~~~~~s~~~~g~~v~k---~~V~---kg 459 (563)
...++++.||+||+.||+.+ ++|+..+.+++|+++||++||++|+++|||+.+.... ..||+.. ++|+ +|
T Consensus 171 ~~~~~~~~ie~Al~~lqv~~-~~~v~~t~~~~Et~~~l~~~T~~Ia~~pyk~~r~~~~---~~~~~~~~~~~~vk~~~~~ 246 (341)
T 2ziu_B 171 GSMVSRVDAEEALVDLQLHT-EAQAQIVQSWKELADFTCAFTKAVAEAPFKKLRDETT---FSFCLESDWAGGVKVDLAG 246 (341)
T ss_dssp ----CHHHHHHHHHHHHHHC-SCBCCEESSHHHHHHHHHHHHHHHHCCC---CCSCCH---HHHHTSCCTTCCBCCCTTC
T ss_pred CCCCCHHHHHHHHHHheeec-CEEEEEeCCHHHHHHHHHHHHHHHHhCcchhhhccCC---cceeecCccccccccCCCC
Confidence 12345567899999999975 7777777899999999999999999999998775321 2244443 2343 48
Q ss_pred CCchHHHHHHHhhccCCCHHHHHHHHHhCCCHHHHHHHhcCCCcChHHHHhhhhcccccCCC---CCcccccHHHHHHHH
Q 008500 460 LIKKSPWLKALVSIPKVQPRYAIAIWKKYPTMKALLSIYMDPSKSVHEKEFLLKDLTVDGLL---GDNRKLGEVCSKRVY 536 (563)
Q Consensus 460 ~~l~dvW~rqLqQI~rVS~eiA~AIv~~YPSP~~Lv~AY~~cs~Se~Eke~LLadlki~g~~---g~~RRIGpaLSrRIY 536 (563)
.+++++|++|||||||||+++|.||+++||||++|++||++|. +++|++.||+|+++..+. .+.|||||+||+|||
T Consensus 247 ~~~~d~w~~~L~qi~gVS~ekA~aI~~~YPTp~~L~~Ay~~~~-~~~e~~~lL~~~~~~~~~g~~~~~r~iG~~lS~rI~ 325 (341)
T 2ziu_B 247 RGLALVWRRQIQQLNRVSLEMASAVVNAYPSPQLLVQAYQQCF-SDKERQNLLADIQVRRGEGVTSTSRRIGPELSRRIY 325 (341)
T ss_dssp TTHHHHHHHHHTTSTTCCHHHHHHHHHHSCSHHHHHHHHHTCS-CHHHHTTTTTTCBTTTTC----CCCBCCHHHHHHHH
T ss_pred CcHHHHHHHHHHHccCCCHHHHHHHHHHCCCHHHHHHHHHhcC-ChHHHHHHHHhhhcccccCCcccCCccCHHHHHHHH
Confidence 8999999999999999999999999999999999999999984 678899999999986433 367999999999999
Q ss_pred HHHhcCCCCcccccc
Q 008500 537 RILIAQSGSIKTDDI 551 (563)
Q Consensus 537 ~vfts~Dp~l~ld~~ 551 (563)
++||++||+++||.+
T Consensus 326 ~~f~~~dp~~~ld~~ 340 (341)
T 2ziu_B 326 LQMTTLQPHLSLDSA 340 (341)
T ss_dssp HHHHCSCTTCBCCC-
T ss_pred HHHhcCCcchhccCC
Confidence 999999999999965
No 2
>2ziu_A MUS81 protein; helix-hairpin-helix, alternative splicing, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; 2.70A {Danio rerio} PDB: 2ziv_A 2ziw_A
Probab=100.00 E-value=3.8e-36 Score=308.44 Aligned_cols=262 Identities=18% Similarity=0.255 Sum_probs=203.5
Q ss_pred eEEEEEcccccccCC--chHHHHHHHhhCCCeEEEeecCCCceEEEEc--cCCCCCCCC---CCCccccCeEEEEecHHH
Q 008500 263 SIVTEIDAKVVELGS--VGGHLLTRFAEKRFKYRIASNPIERSIVWTM--PVPEHISQI---SPQGMEIPYILLIYEAEE 335 (563)
Q Consensus 263 ~mvVvID~~lle~~s--~GgqLl~~L~~lgv~~~I~s~pIp~sI~WrR--kVp~~~~~~---~~~~~eEp~VLv~l~aee 335 (563)
.++++||.+.+.+.+ .++++...|..+|++|.++.+++ |++.|.. ++....+.. ...+...+++|.+.+.+|
T Consensus 19 ~~~ivvD~RE~~~~~~~~~~~~~~~l~~~gv~~~~~~L~v-GDyiw~~~~~~~~~~~~~~~~~~~e~vl~~~VERK~~~D 97 (311)
T 2ziu_A 19 DIVLCVDLCETTGGSSVRKQELVKELQRNSVTFDVRKLNV-GDFLWVARERVTPVPGQLRPPVGKELVLDYIIERKRMDD 97 (311)
T ss_dssp EEEEEECGGGSCC-----CCHHHHHHHTTTCCEECCCCSS-CSEEEEEEECCCCCTTCSSCCCCCEEEEEEEEEEEEHHH
T ss_pred EEEEEEECccccCCccchHHHHHHHHHHCCCCeEEEecCc-cCEEEEEecCCCccccccccccCceeeeeeEeEeccHHH
Confidence 388999999976332 56799999999999999999998 8888743 333222211 122333578999999999
Q ss_pred HHHHHhcCchhHHHHHHHhh-CCCCcEEEEeccchHHHHHHhhhhhcCCCCCCCCCCCcHHHHHHHHHHhhceeEEEEcC
Q 008500 336 FCNLVLNESLMDHVSLVRRH-YPSHTICYLTNRLMAHISKKEKERYKNPANNSGWRRPPVEEVLAKLTTHFFRVHSRQCI 414 (563)
Q Consensus 336 Fv~lI~d~~L~e~v~rLk~~-~P~~kliyLVEGL~~ylrKr~~~qyk~~~~~~~~~rp~VEeALlqLQl~~~~Vh~~~~~ 414 (563)
|+.+|.||+|.+|+.||+++ |+ +++|||||...... + + ......++.||+.||+++ ++++..+.
T Consensus 98 l~~Si~dgR~~~Q~~rl~~~g~~--~~~ylIE~~~~~~~---~--~-------~~~~~~i~~aL~~l~v~~-g~~Vi~t~ 162 (311)
T 2ziu_A 98 LCGSIIDGRFREQKFRLKRCGLR--KPIYLVEECGSAAA---H--L-------SIPESTLQQAIVNTQVVD-GFFVKRVQ 162 (311)
T ss_dssp HHHHHHHTCHHHHHHHHHTTSCS--EEEEEEESCSSSHH---H--H-------SSCHHHHHHHHHHHHHTT-CCEEEECS
T ss_pred HHHHHhcchHHHHHHHHHhCCCC--CeEEEEecCCcccc---c--c-------CCCHHHHHHHHHHHhhhc-CeEEEEeC
Confidence 99999999999999999998 54 69999999864211 0 0 122357899999999986 88888888
Q ss_pred CHHHHHHHHHHHHHHHHhcccccccc-ccc---------------cccCCceeccCc------cccCCCchHHHHHHHhh
Q 008500 415 DEAEVAEHVVGLTSSLASCQFRKKLT-RLS---------------VNANGSLISKDS------VDKNLIKKSPWLKALVS 472 (563)
Q Consensus 415 d~~Eta~~I~~lTKaIA~~PyKk~~~-~~s---------------~~~~g~~v~k~~------V~kg~~l~dvW~rqLqQ 472 (563)
+++|||+||+.||++|++. |+...- ... ......|++.+. ..++.+++++|.+||+|
T Consensus 163 s~~eTa~~l~~lt~~i~~~-y~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~f~~f~~~~~k~~~~t~~e~~~~mL~~ 241 (311)
T 2ziu_A 163 DAKESAAYLTIMTRYLQKL-YQNCTLFCRSRELEGDGEAESEKMVANLSCSLMAFTEFNYGAIKNKCQTVREVFARQLMQ 241 (311)
T ss_dssp SHHHHHHHHHHHHHHHHHT-TTTCCBCCC----------------CCSCSCCEEHHHHHHHHHHHTCCBHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHH-hccccccccCcchhccccccccccccCcccccccHHHHHHhcccccCCcHHHHHHHHHHh
Confidence 9999999999999999986 664310 000 001112333222 13478899999999999
Q ss_pred ccCCCHHHHHHHHHhCCCHHHHHHHhcCCCcChHHHHhhhhcccccCCCCCcccccHHHHHHHHHHHhcCCCC
Q 008500 473 IPKVQPRYAIAIWKKYPTMKALLSIYMDPSKSVHEKEFLLKDLTVDGLLGDNRKLGEVCSKRVYRILIAQSGS 545 (563)
Q Consensus 473 I~rVS~eiA~AIv~~YPSP~~Lv~AY~~cs~Se~Eke~LLadlki~g~~g~~RRIGpaLSrRIY~vfts~Dp~ 545 (563)
|||||+++|.+|+.+||||+.|++||++|. ++++++.||++++. | .+.|+|||+||+|||.+|++.||+
T Consensus 242 IpGVs~~~A~~I~~~ypTp~~L~~Ay~~~~-~~~e~~~lL~~i~~-g--~~~r~IG~~lS~kI~~~f~~~~p~ 310 (311)
T 2ziu_A 242 ISGVSGDKAAAVLEHYSTVSSLLQAYDKCS-SETEKEKLLSSVKY-G--KLKRNLGPALSRTIYQLYCTRGPL 310 (311)
T ss_dssp BTTCCHHHHHHHHHHCSSHHHHHHHHHHCS-SHHHHTTTTTTCEE-T--TTTEECHHHHHHHHHHHHHCSSCC
T ss_pred ccCCCHHHHHHHHHHCCCHHHHHHHHHhcC-CHHHHHHHHHhccc-C--CCCCCcCHHHHHHHHHHhccCCCC
Confidence 999999999999999999999999999884 67889999999985 2 367999999999999999999997
No 3
>2zix_A Crossover junction endonuclease MUS81; helix-hairpin-helix, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium, metal-binding, nucleus; 3.50A {Homo sapiens}
Probab=100.00 E-value=9.4e-37 Score=313.01 Aligned_cols=259 Identities=17% Similarity=0.205 Sum_probs=200.4
Q ss_pred EEEEEcccccccCCchHHHHHHHhhCCCeEEEeecCCCceEEE--EccCCCCCCCCCCCccccCeEEEEecHHHHHHHHh
Q 008500 264 IVTEIDAKVVELGSVGGHLLTRFAEKRFKYRIASNPIERSIVW--TMPVPEHISQISPQGMEIPYILLIYEAEEFCNLVL 341 (563)
Q Consensus 264 mvVvID~~lle~~s~GgqLl~~L~~lgv~~~I~s~pIp~sI~W--rRkVp~~~~~~~~~~~eEp~VLv~l~aeeFv~lI~ 341 (563)
++++||.+.+.++..+.++...|...|++|.++.+++ |++.| +++++...+ .......+++|.+.+.+||+.+|.
T Consensus 25 ~~ivvD~RE~~~~~~~~~~~~~L~~~gv~~~~~~L~v-GDyi~i~~~~~~~~~~--~~~e~vl~~iVERKs~~Dl~~Si~ 101 (307)
T 2zix_A 25 VLLCVDIGETRGGGHRPELLRELQRLHVTHTVRKLHV-GDFVWVAQETNPRDPA--NPGELVLDHIVERKRLDDLCSSII 101 (307)
T ss_dssp CCCBCCSSSCCC---CCTTSTTTGGGCCCCCCCCCCS-SSBBCCCCCCC----C--CCCCCCCSEEECCCCTTTTHHHHS
T ss_pred EEEEEECcccccCcchHHHHHHHHHCCCCeEEEeCCC-CCEEEEEecCCCCccc--ccceeeeeeeeeeeeHHHHHHHhc
Confidence 7889999998755556679999999999999999998 88888 666543211 123344589999999999999999
Q ss_pred cCchhHHHHHHHhh-CCCCcEEEEeccchHHHHHHhhhhhcCCCCCCCCCCCcHHHHHHHHHHhhceeEEEEcCCHHHHH
Q 008500 342 NESLMDHVSLVRRH-YPSHTICYLTNRLMAHISKKEKERYKNPANNSGWRRPPVEEVLAKLTTHFFRVHSRQCIDEAEVA 420 (563)
Q Consensus 342 d~~L~e~v~rLk~~-~P~~kliyLVEGL~~ylrKr~~~qyk~~~~~~~~~rp~VEeALlqLQl~~~~Vh~~~~~d~~Eta 420 (563)
||+|.+|+.||+++ |+ +++|||||...+.+ .......++.||+.||+++ ++++..+.+++|||
T Consensus 102 dgRl~~Q~~rl~~~g~~--~~~ylIE~~~~~~~-------------~~~~~~~i~~al~~l~~~~-~~~i~~t~~~~~Ta 165 (307)
T 2zix_A 102 DGRFREQKFRLKRCGLE--RRVYLVEEHGSVHN-------------LSLPESTLLQAVTNTQVID-GFFVKRTADIKESA 165 (307)
T ss_dssp SSHHHHHTTTTCTTTCB--EEECCBSCCCSSSS-------------CSSCHHHHHHHHHHHHHSS-CCCCCBCCSHHHHT
T ss_pred CCcHHHHHHHHHhCCCC--CeEEEEecCCcccc-------------cCCCHHHHHHHHHHHhhhc-CeEEEEeCCHHHHH
Confidence 99999999999998 54 69999999763211 1122356899999999987 77777778899999
Q ss_pred HHHHHHHHHHHhccccccccc--------c------ccccCCceeccCcc------ccCCCchHHHHHHHhhccCCCHHH
Q 008500 421 EHVVGLTSSLASCQFRKKLTR--------L------SVNANGSLISKDSV------DKNLIKKSPWLKALVSIPKVQPRY 480 (563)
Q Consensus 421 ~~I~~lTKaIA~~PyKk~~~~--------~------s~~~~g~~v~k~~V------~kg~~l~dvW~rqLqQI~rVS~ei 480 (563)
+||..||++|++.+-++.... + .......|+....+ .++.+++++|.+||+||||||+++
T Consensus 166 ~~l~~lt~~l~e~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~f~~f~~~~~Ks~~~tv~~v~~~~L~~I~GVs~~~ 245 (307)
T 2zix_A 166 AYLALLTRGLQRLYQGHTLRSRPWGTPGNPESGAMTSPNPLCSLLTFSDFNAGAIKNKAQSVREVFARQLMQVRGVSGEK 245 (307)
T ss_dssp HHHHHHHTTTTTSSCSSCCCCCC----------------CCCCSCCSSTTTTGGGTTTSCCTTTHHHHTTTCSTTCCSTT
T ss_pred HHHHHHHHHHHHHHhcCcccccchhhhhhhhhhhccccCcccccccHHHHHHhhccccCCcHHHHHHHHHHhccCCCHHH
Confidence 999999999998733221110 0 01112234433321 146789999999999999999999
Q ss_pred HHHHHHhCCCHHHHHHHhcCCCcChHHHHhhhhcccccCCCCCcccccHHHHHHHHHHHhcCCCC
Q 008500 481 AIAIWKKYPTMKALLSIYMDPSKSVHEKEFLLKDLTVDGLLGDNRKLGEVCSKRVYRILIAQSGS 545 (563)
Q Consensus 481 A~AIv~~YPSP~~Lv~AY~~cs~Se~Eke~LLadlki~g~~g~~RRIGpaLSrRIY~vfts~Dp~ 545 (563)
|.+|+.+||||..|++||++|. ++++++.||++++. | . +.|+|||+||||||.+|++.||+
T Consensus 246 A~~I~~~ypTp~~L~~Ay~~~~-~~~e~~~lL~~l~~-g-~-~~r~IG~~lSrkI~~~f~~~~p~ 306 (307)
T 2zix_A 246 AAALVDRYSTPASLLAAYDACA-TPKEQETLLSTIKC-G-R-LQRNLGPALSRTLSQLYCSYGPL 306 (307)
T ss_dssp TTTSSSSSCSHHHHHHHHHCCS-SGGGTTTTTSCCCC-T-T-TTCCCCHHHHHHHHHHHTCSSCC
T ss_pred HHHHHHHcCCHHHHHHHHHhcC-CHHHHHHHHHhccc-C-C-CCCccCHHHHHHHHHHHccCCCC
Confidence 9999999999999999999884 66788899999874 2 2 57999999999999999999997
No 4
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=99.63 E-value=1.8e-14 Score=140.61 Aligned_cols=210 Identities=14% Similarity=0.173 Sum_probs=161.4
Q ss_pred ceEEEEEcccccccCCchHHHHHHHhhCCCeEEEeecCCCceEEEEccCCCCCCCCCCCccccCeEEEEecHHHHHHHHh
Q 008500 262 DSIVTEIDAKVVELGSVGGHLLTRFAEKRFKYRIASNPIERSIVWTMPVPEHISQISPQGMEIPYILLIYEAEEFCNLVL 341 (563)
Q Consensus 262 K~mvVvID~~lle~~s~GgqLl~~L~~lgv~~~I~s~pIp~sI~WrRkVp~~~~~~~~~~~eEp~VLv~l~aeeFv~lI~ 341 (563)
+.+++++|++-.. ..+...|...|+.+++..+++ |++.|.. +++|.+.+.++|+.++.
T Consensus 7 ~~~~iivD~RE~~-----s~~~~~l~~~gv~~~~~~L~v-gDy~~~~----------------~~~VERKs~~Dl~~Si~ 64 (219)
T 2bgw_A 7 GRPRVYVDVREER-----SPVPSILESLGVQVIPKQLPM-GDYLVSD----------------SIIVERKTSSDFAKSLF 64 (219)
T ss_dssp SSCEEEEETTTTT-----SSHHHHHHHTTCEEEEECCSS-SSEEEET----------------TEEEEEEEHHHHHHHHH
T ss_pred CCeEEEEECCCcc-----cHhHHHHHhCCCEEEEEEcCc-CCEEeeC----------------CeEEEeCCHHHHHHHhh
Confidence 4678999999764 238899999999999999987 9999952 47899999999999999
Q ss_pred cCchhHHHHHHHhhCCCCcEEEEeccchHHHHHHhhhhhcCCCCCCCCCCCcHHHHHHHHHHhhceeEEEEcCCHHHHHH
Q 008500 342 NESLMDHVSLVRRHYPSHTICYLTNRLMAHISKKEKERYKNPANNSGWRRPPVEEVLAKLTTHFFRVHSRQCIDEAEVAE 421 (563)
Q Consensus 342 d~~L~e~v~rLk~~~P~~kliyLVEGL~~ylrKr~~~qyk~~~~~~~~~rp~VEeALlqLQl~~~~Vh~~~~~d~~Eta~ 421 (563)
+|+|.+|+.+|+++|. +.+|||||-..- ..|. .....+..+|..+++++ ++....+.+.+|+|+
T Consensus 65 ~~Rl~~Q~~~l~~~~~--~~~lliE~d~~~------~~~~-------~~~~~i~~~l~~~~~~~-~~~vi~t~s~~eta~ 128 (219)
T 2bgw_A 65 DGRLFEQASRLAEHYE--TVFIIVEGPPVP------RRYR-------GRERSLYAAMAALQLDY-GIRLMNTMDPKGTAL 128 (219)
T ss_dssp HSHHHHHHHHHHHHCS--EEEEEEESCSSC------GGGT-------TTHHHHHHHHHHHHHHS-CCEEEEESSHHHHHH
T ss_pred cCcHHHHHHHHHHhcC--CcEEEEEecCcc------cccc-------CCHHHHHHHHHHHHHHC-CceEEEcCCHHHHHH
Confidence 9999999999999975 689999985311 0110 11235677889999975 777778889999999
Q ss_pred HHHHHHHHHHhccccccccccccccCCceeccCccccCCCchHHHHHHHhhccCCCHHHHHHHHHhCCCHHHHHHHhcCC
Q 008500 422 HVVGLTSSLASCQFRKKLTRLSVNANGSLISKDSVDKNLIKKSPWLKALVSIPKVQPRYAIAIWKKYPTMKALLSIYMDP 501 (563)
Q Consensus 422 ~I~~lTKaIA~~PyKk~~~~~s~~~~g~~v~k~~V~kg~~l~dvW~rqLqQI~rVS~eiA~AIv~~YPSP~~Lv~AY~~c 501 (563)
||..|++.. +.+++. .+......+..++.+.+..+|+.||||++..|.+|+++|+|+..|+.|.
T Consensus 129 ~l~~l~~~~-~~~~~~------------ai~~~~~~~~~~~~~~~~~~L~~i~gVg~~~a~~Ll~~fgs~~~l~~a~--- 192 (219)
T 2bgw_A 129 VIESLARLS-TREGGQ------------RIVIHKKPRLSDVREWQLYILQSFPGIGRRTAERILERFGSLERFFTAS--- 192 (219)
T ss_dssp HHHHHHHHH-SCBCCT------------TCCCCCCCCCCHHHHHHHHHHHTSTTCCHHHHHHHHHHHSSHHHHTTCC---
T ss_pred HHHHHHHhc-cccccc------------ccccccccccccHHHHHHHHHhcCCCCCHHHHHHHHHHcCCHHHHHhCC---
Confidence 999999977 333221 1111111223456778999999999999999999999999988887654
Q ss_pred CcChHHHHhhhhcccccCCCCCcccccHHHHHHHHHHHhc
Q 008500 502 SKSVHEKEFLLKDLTVDGLLGDNRKLGEVCSKRVYRILIA 541 (563)
Q Consensus 502 s~Se~Eke~LLadlki~g~~g~~RRIGpaLSrRIY~vfts 541 (563)
.+ -|..++ -||+..+++||.+|..
T Consensus 193 ---~e----~L~~v~---------GiG~~~a~~i~~~~~~ 216 (219)
T 2bgw_A 193 ---KA----EISKVE---------GIGEKRAEEIKKILMT 216 (219)
T ss_dssp ---HH----HHHHST---------TCCHHHHHHHHHHHHS
T ss_pred ---HH----HHhhCC---------CCCHHHHHHHHHHHhc
Confidence 22 133332 4899999999999964
No 5
>1j23_A HEF nuclease, ATP-dependent RNA helicase, putative; structure-specific endonuclease, hydrolase; 1.78A {Pyrococcus furiosus} SCOP: c.52.1.20 PDB: 1j22_A 1j24_A 1j25_A
Probab=99.07 E-value=1.3e-09 Score=100.68 Aligned_cols=132 Identities=11% Similarity=0.163 Sum_probs=107.8
Q ss_pred ceEEEEEcccccccCCchHHHHHHHhhCCCeEEEeecCCCceEEEEccCCCCCCCCCCCccccCeEEEEecHHHHHHHHh
Q 008500 262 DSIVTEIDAKVVELGSVGGHLLTRFAEKRFKYRIASNPIERSIVWTMPVPEHISQISPQGMEIPYILLIYEAEEFCNLVL 341 (563)
Q Consensus 262 K~mvVvID~~lle~~s~GgqLl~~L~~lgv~~~I~s~pIp~sI~WrRkVp~~~~~~~~~~~eEp~VLv~l~aeeFv~lI~ 341 (563)
..+++++|.+-.. + .+...|...|+++.++.+++ |++.|.. +++|.+.+.+||+.++.
T Consensus 3 ~~~~IiVD~RE~~-s----~~~~~L~~~gv~~~~~~L~v-GDyi~~~----------------~~~VERKs~~DL~~Si~ 60 (143)
T 1j23_A 3 EGVKVVVDSRELR-S----EVVKRLKLLGVKLEVKTLDV-GDYIISE----------------DVAIERKSANDLIQSII 60 (143)
T ss_dssp --CEEEEEGGGTT-S----HHHHHHHHTTCEEEEECCSS-CSEECSS----------------SEEEEEEEHHHHHHHHH
T ss_pred CCcEEEEECCCcc-h----HhHHHHHHCCCeEEEEECCC-CCEEecC----------------CcEEEeccHHHHHHhhh
Confidence 3578999999764 2 38899999999999999998 9999932 47899999999999999
Q ss_pred cCchhHHHHHHHhhCCCCcEEEEeccchHHHHHHhhhhhcCCCCCCCCCCCcHHHHHHHHHHhhceeEEEEcCCHHHHHH
Q 008500 342 NESLMDHVSLVRRHYPSHTICYLTNRLMAHISKKEKERYKNPANNSGWRRPPVEEVLAKLTTHFFRVHSRQCIDEAEVAE 421 (563)
Q Consensus 342 d~~L~e~v~rLk~~~P~~kliyLVEGL~~ylrKr~~~qyk~~~~~~~~~rp~VEeALlqLQl~~~~Vh~~~~~d~~Eta~ 421 (563)
+|+|.+|+.+|+++|. +++|||||- .| . . .......+..||+.+++++ ++....+.+.++||+
T Consensus 61 dgRl~~Q~~rL~~~~~--~~~~LIE~~-~~-~------~------~~~~~~~l~~al~~~~~~~-g~~vi~t~~~~~Ta~ 123 (143)
T 1j23_A 61 DGGLFDQVKRLKEAYS--RPIMIVEGS-LY-G------I------RNVHPNAIRGAIAAVTVDF-GVPIIFSSTPEETAQ 123 (143)
T ss_dssp TTCHHHHHHHHHHHCS--EEEEEEESC-CT-T------C------CSSCHHHHHHHHHHHHHTS-CCCEEEESSHHHHHH
T ss_pred cchHHHHHHHHHhcCC--ccEEEEEcC-Cc-c------c------ccCCHHHHHHHHHHHHHHc-CeeEEEcCCHHHHHH
Confidence 9999999999999875 699999985 21 1 0 0112245788999999986 778878889999999
Q ss_pred HHHHHHHHHHh
Q 008500 422 HVVGLTSSLAS 432 (563)
Q Consensus 422 ~I~~lTKaIA~ 432 (563)
||..||+....
T Consensus 124 ~l~~l~~~~q~ 134 (143)
T 1j23_A 124 YIFLIAKREQE 134 (143)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHhhcc
Confidence 99999998654
No 6
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19}
Probab=95.18 E-value=0.0064 Score=64.73 Aligned_cols=141 Identities=18% Similarity=0.174 Sum_probs=84.1
Q ss_pred EEEEecHHHHHHHHhc--CchhHHHHHHHhhCCCCcEEEEeccchHHHHHHhhhhhcCCCCCCCCCCC-cHHHH----HH
Q 008500 327 ILLIYEAEEFCNLVLN--ESLMDHVSLVRRHYPSHTICYLTNRLMAHISKKEKERYKNPANNSGWRRP-PVEEV----LA 399 (563)
Q Consensus 327 VLv~l~aeeFv~lI~d--~~L~e~v~rLk~~~P~~kliyLVEGL~~ylrKr~~~qyk~~~~~~~~~rp-~VEeA----Ll 399 (563)
++.+.+..||++++.+ |+|.+|+.+|.++|. +.++||||=-..+.. -|... +-.| .|--| |+
T Consensus 343 ~VERKSVsDFInSLiDgdGRLFdQaerLarhYe--rPVLLIEGDLeEIe~----LYteR-----~IhPNAIRGAveiqLA 411 (685)
T 4gfj_A 343 LEEAKSVNRTLATLIDEHGLSPDAADELIEHFE--SIAGILATDLEEIER----MYEEG-----RLSEEAYRAAVEIQLA 411 (685)
T ss_dssp HHHHHHHCHHHHHHHHTTCCCHHHHHHHHHHHS--SHHHHHTSCHHHHHH----HHHTT-----SSCHHHHHHHHHHHHH
T ss_pred EEEeCcHHHHHHHhhcCCCCHHHHHHHHHHhcC--CCEEEEEeccHHhhh----hhccC-----CCCHHHHhhhHhhhhh
Confidence 4558999999999999 999999999999997 478999983211110 11000 0012 12233 45
Q ss_pred HHHHhhceeEEEEcCCHHHHHHHHHHHHHHHHhccccccc--ccc------ccccCCceeccCccccCCCchHHHHHHHh
Q 008500 400 KLTTHFFRVHSRQCIDEAEVAEHVVGLTSSLASCQFRKKL--TRL------SVNANGSLISKDSVDKNLIKKSPWLKALV 471 (563)
Q Consensus 400 qLQl~~~~Vh~~~~~d~~Eta~~I~~lTKaIA~~PyKk~~--~~~------s~~~~g~~v~k~~V~kg~~l~dvW~rqLq 471 (563)
.|.+.+ ++- +++++.+.. ++..+..... ... ++..-|... .++ ..-. ..||.
T Consensus 412 SLAvkf-G~g-------~eTAe~L~~----~agr~l~leqi~rdrEvgkL~SVpGikek~----skt-L~eq---eamLt 471 (685)
T 4gfj_A 412 ELTKKE-GVG-------RKTAERLLR----AFGNPERVKQLAREFEIEKLASVEGVGERV----LRS-LVPG---YASLI 471 (685)
T ss_dssp HHHTST-TCC-------HHHHHHHHH----HHSSHHHHHHHHHTTCHHHHHTSTTCCHHH----HHH-HSTT---HHHHH
T ss_pred hhhhhc-CCc-------hHHHHHHHH----Hhcchhhhhhhhhhhhhhcccccccchhhh----hcc-cccc---eeeee
Confidence 566653 322 577776543 3332211100 001 121111100 000 0000 68999
Q ss_pred hccCCCHHHHHHHHHhCCCHHHHHHHh
Q 008500 472 SIPKVQPRYAIAIWKKYPTMKALLSIY 498 (563)
Q Consensus 472 QI~rVS~eiA~AIv~~YPSP~~Lv~AY 498 (563)
.|+||.+..|..+..+|+|...++.|=
T Consensus 472 AIaGIGp~tAeRLLEkFGSVe~Vm~At 498 (685)
T 4gfj_A 472 SIRGIDRERAERLLKKYGGYSKVREAG 498 (685)
T ss_dssp TSTTCCHHHHHHHHHHHTSHHHHHHSC
T ss_pred ccCCCCHHHHHHHHHHhcCHHHHHhCC
Confidence 999999999999999999999999864
No 7
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=92.02 E-value=0.33 Score=38.34 Aligned_cols=63 Identities=19% Similarity=0.293 Sum_probs=48.7
Q ss_pred CCchHHHHHHHhhccCCCHHHHHHHHHhCCCHHHHHHHhcCCCcChHHHHhhhhcccccCCCCCcccccHHHHHHHHHHH
Q 008500 460 LIKKSPWLKALVSIPKVQPRYAIAIWKKYPTMKALLSIYMDPSKSVHEKEFLLKDLTVDGLLGDNRKLGEVCSKRVYRIL 539 (563)
Q Consensus 460 ~~l~dvW~rqLqQI~rVS~eiA~AIv~~YPSP~~Lv~AY~~cs~Se~Eke~LLadlki~g~~g~~RRIGpaLSrRIY~vf 539 (563)
......+...|..||||.+..|..|..+|.|+..|+.|- .+ -|..+ .-||+....+|+..|
T Consensus 6 ~~~~~~~~~~L~~i~giG~~~a~~Ll~~fgs~~~l~~a~------~~----~L~~i---------~Gig~~~a~~i~~~~ 66 (75)
T 1x2i_A 6 LTLAERQRLIVEGLPHVSATLARRLLKHFGSVERVFTAS------VA----ELMKV---------EGIGEKIAKEIRRVI 66 (75)
T ss_dssp CCHHHHHHHHHTTSTTCCHHHHHHHHHHHCSHHHHHHCC------HH----HHTTS---------TTCCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHcCCCCCCHHHHHHHHHHcCCHHHHHhCC------HH----HHhcC---------CCCCHHHHHHHHHHH
Confidence 445677888899999999999999999999988887542 11 12222 248999999999998
Q ss_pred hc
Q 008500 540 IA 541 (563)
Q Consensus 540 ts 541 (563)
..
T Consensus 67 ~~ 68 (75)
T 1x2i_A 67 TA 68 (75)
T ss_dssp HS
T ss_pred hC
Confidence 64
No 8
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=88.86 E-value=0.4 Score=40.18 Aligned_cols=58 Identities=17% Similarity=0.297 Sum_probs=46.1
Q ss_pred chHHHHHHHhhccCCCHHHHHHHHHhCCCHHHHHHHhcCCCcChHHHHhhhhcccccCCCCCcccccHHH-HHHHHHHHh
Q 008500 462 KKSPWLKALVSIPKVQPRYAIAIWKKYPTMKALLSIYMDPSKSVHEKEFLLKDLTVDGLLGDNRKLGEVC-SKRVYRILI 540 (563)
Q Consensus 462 l~dvW~rqLqQI~rVS~eiA~AIv~~YPSP~~Lv~AY~~cs~Se~Eke~LLadlki~g~~g~~RRIGpaL-SrRIY~vft 540 (563)
....=..+|..||||++-.+.++..+|.|+..|.+|= .+| |+. -||..+ .++||.+|.
T Consensus 12 ~N~~~~s~L~~IpGIG~kr~~~LL~~FgSl~~i~~AS------~eE----L~~-----------vig~~~~A~~I~~~l~ 70 (84)
T 1z00_B 12 YNPGPQDFLLKMPGVNAKNCRSLMHHVKNIAELAALS------QDE----LTS-----------ILGNAANAKQLYDFIH 70 (84)
T ss_dssp SCHHHHHHHHTCSSCCHHHHHHHHHHSSCHHHHHHSC------HHH----HHH-----------HHSCHHHHHHHHHHHT
T ss_pred ccccHHHHHHhCCCCCHHHHHHHHHHcCCHHHHHHCC------HHH----HHH-----------HhCchHHHHHHHHHHH
Confidence 4555678999999999999999999999999998754 222 111 266778 999999995
No 9
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=88.57 E-value=0.32 Score=38.39 Aligned_cols=52 Identities=21% Similarity=0.400 Sum_probs=41.6
Q ss_pred HHHhhccCCCHHHHHHHHHhCCCHHHHHHHhcCCCcChHHHHhhhhcccccCCCCCcccccHHH-HHHHHHHHh
Q 008500 468 KALVSIPKVQPRYAIAIWKKYPTMKALLSIYMDPSKSVHEKEFLLKDLTVDGLLGDNRKLGEVC-SKRVYRILI 540 (563)
Q Consensus 468 rqLqQI~rVS~eiA~AIv~~YPSP~~Lv~AY~~cs~Se~Eke~LLadlki~g~~g~~RRIGpaL-SrRIY~vft 540 (563)
.+|..||||++-.+.++.++|.|+..|.+|= .+| |. .-||+.+ .++||.+|.
T Consensus 4 s~L~~IpGIG~kr~~~LL~~Fgs~~~i~~As------~ee-------L~--------~vig~~~~A~~I~~~l~ 56 (63)
T 2a1j_A 4 DFLLKMPGVNAKNCRSLMHHVKNIAELAALS------QDE-------LT--------SILGNAANAKQLYDFIH 56 (63)
T ss_dssp HHHHTSTTCCHHHHHHHHHHCSSHHHHHTCC------HHH-------HH--------HHHSCHHHHHHHHHHHH
T ss_pred hHHHcCCCCCHHHHHHHHHHcCCHHHHHHCC------HHH-------HH--------HHcCchHHHHHHHHHHh
Confidence 4789999999999999999999999997643 322 21 1267788 999999995
No 10
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=86.68 E-value=1.4 Score=36.46 Aligned_cols=62 Identities=15% Similarity=0.170 Sum_probs=47.4
Q ss_pred CchHHHHHHHhhccCCCHHHHHHHHHhCCCHHHHHHHhcCCCcChHHHHhhhhcccccCCCCCcccccHHHHHHHHHHHh
Q 008500 461 IKKSPWLKALVSIPKVQPRYAIAIWKKYPTMKALLSIYMDPSKSVHEKEFLLKDLTVDGLLGDNRKLGEVCSKRVYRILI 540 (563)
Q Consensus 461 ~l~dvW~rqLqQI~rVS~eiA~AIv~~YPSP~~Lv~AY~~cs~Se~Eke~LLadlki~g~~g~~RRIGpaLSrRIY~vft 540 (563)
.....+...|..||||.+..|..|.+.|.|+..|+.|- .+ -|..+ .-||+....+|+.+|.
T Consensus 12 ~~~~~~~~~L~~IpgIG~~~A~~Ll~~fgsl~~l~~a~------~~----eL~~i---------~GIG~~~a~~I~~~l~ 72 (89)
T 1z00_A 12 DFVSRVTECLTTVKSVNKTDSQTLLTTFGSLEQLIAAS------RE----DLALC---------PGLGPQKARRLFDVLH 72 (89)
T ss_dssp HHHHHHHHHHTTSSSCCHHHHHHHHHHTCBHHHHHHCC------HH----HHHTS---------TTCCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHcCCCCCHHHHHHHHHHCCCHHHHHhCC------HH----HHHhC---------CCCCHHHHHHHHHHHH
Confidence 34566777899999999999999999999988877543 11 12222 2389999999999996
Q ss_pred c
Q 008500 541 A 541 (563)
Q Consensus 541 s 541 (563)
.
T Consensus 73 ~ 73 (89)
T 1z00_A 73 E 73 (89)
T ss_dssp S
T ss_pred H
Confidence 3
No 11
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=84.01 E-value=1.3 Score=36.87 Aligned_cols=60 Identities=15% Similarity=0.197 Sum_probs=45.3
Q ss_pred chHHHHHHHhhccCCCHHHHHHHHHhCCCHHHHHHHhcCCCcChHHHHhhhhcccccCCCCCcccccHHHHHHHHHHHh
Q 008500 462 KKSPWLKALVSIPKVQPRYAIAIWKKYPTMKALLSIYMDPSKSVHEKEFLLKDLTVDGLLGDNRKLGEVCSKRVYRILI 540 (563)
Q Consensus 462 l~dvW~rqLqQI~rVS~eiA~AIv~~YPSP~~Lv~AY~~cs~Se~Eke~LLadlki~g~~g~~RRIGpaLSrRIY~vft 540 (563)
....+...|..||||.+..|..|...|.++..|+.|- .+ -|..+ .-||+....+|+.+|.
T Consensus 26 ~~~~~~~~L~~IpgIG~~~A~~Ll~~fgs~~~l~~as------~~----eL~~i---------~GIG~~~a~~I~~~l~ 85 (91)
T 2a1j_B 26 FVSRVTECLTTVKSVNKTDSQTLLTTFGSLEQLIAAS------RE----DLALC---------PGLGPQKARRLFDVLH 85 (91)
T ss_dssp HHHHHHHHHTTSTTCCHHHHHHHHHHHSSHHHHHSCC------HH----HHHTS---------SSCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHCCCHHHHHhCC------HH----HHHhC---------CCCCHHHHHHHHHHHh
Confidence 4556677899999999999999999999987776432 11 12222 2388999999999985
No 12
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=80.23 E-value=0.67 Score=37.46 Aligned_cols=59 Identities=14% Similarity=0.161 Sum_probs=42.3
Q ss_pred hHHHHHHHhhccCCCHHHHHHHHHhCCCHHHHHHHhcCCCcChHHHHhhhhcccccCCCCCcccccHHHHHHHHHHHh
Q 008500 463 KSPWLKALVSIPKVQPRYAIAIWKKYPTMKALLSIYMDPSKSVHEKEFLLKDLTVDGLLGDNRKLGEVCSKRVYRILI 540 (563)
Q Consensus 463 ~dvW~rqLqQI~rVS~eiA~AIv~~YPSP~~Lv~AY~~cs~Se~Eke~LLadlki~g~~g~~RRIGpaLSrRIY~vft 540 (563)
+..+...|..||||.+..|..|..+|.++..|+.|- .+ -|..+ .-||++...+|+.+|.
T Consensus 19 ~~~~~~~L~~I~gIG~~~A~~Ll~~fgsl~~l~~a~------~e----eL~~i---------~GIG~~~a~~I~~~~~ 77 (78)
T 1kft_A 19 SHMNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNAS------VE----EIAKV---------PGISQGLAEKIFWSLK 77 (78)
T ss_dssp ----CCGGGGCTTCSSSHHHHHHHHHSCHHHHHHCC------HH----HHTTS---------SSTTSHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHcCCHHHHHHCC------HH----HHHHC---------CCCCHHHHHHHHHHHh
Confidence 445666789999999999999999999988877642 11 12222 2388999999998874
No 13
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=72.18 E-value=6.5 Score=37.52 Aligned_cols=63 Identities=21% Similarity=0.319 Sum_probs=46.2
Q ss_pred hHHHHHHHhhccCCCHHHHHHHHHhCCCHHHHHHHhcCCCcChHHHHhhhhcccccCCCCCcccccHHHHHHHHHHHhcC
Q 008500 463 KSPWLKALVSIPKVQPRYAIAIWKKYPTMKALLSIYMDPSKSVHEKEFLLKDLTVDGLLGDNRKLGEVCSKRVYRILIAQ 542 (563)
Q Consensus 463 ~dvW~rqLqQI~rVS~eiA~AIv~~YPSP~~Lv~AY~~cs~Se~Eke~LLadlki~g~~g~~RRIGpaLSrRIY~vfts~ 542 (563)
+++|. .|..|+||.|-.|.+|.+.|.+ ..|.+|-.+.+ . ..|..++ -||+...+||+.-|-.+
T Consensus 68 k~~f~-~L~~v~GIGpk~A~~iL~~f~~-~~l~~aI~~~d--~----~~L~~vp---------GIG~K~A~rI~~~lk~k 130 (191)
T 1ixr_A 68 LALFE-LLLSVSGVGPKVALALLSALPP-RLLARALLEGD--A----RLLTSAS---------GVGRRLAERIALELKGK 130 (191)
T ss_dssp HHHHH-HHHSSSCCCHHHHHHHHHHSCH-HHHHHHHHTTC--H----HHHTTST---------TCCHHHHHHHHHHHTTT
T ss_pred HHHHH-HHhcCCCcCHHHHHHHHHhCCh-HHHHHHHHhCC--H----HHHHhCC---------CCCHHHHHHHHHHHHHh
Confidence 55555 9999999999999999999977 55666653321 1 2333332 48999999999988655
No 14
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=62.75 E-value=13 Score=35.62 Aligned_cols=62 Identities=18% Similarity=0.259 Sum_probs=43.7
Q ss_pred hHHHHHHHhhccCCCHHHHHHHHHhCCCHHHHHHHhcCCCcChHHHHhhhhcccccCCCCCcccccHHHHHHHHHHHhc
Q 008500 463 KSPWLKALVSIPKVQPRYAIAIWKKYPTMKALLSIYMDPSKSVHEKEFLLKDLTVDGLLGDNRKLGEVCSKRVYRILIA 541 (563)
Q Consensus 463 ~dvW~rqLqQI~rVS~eiA~AIv~~YPSP~~Lv~AY~~cs~Se~Eke~LLadlki~g~~g~~RRIGpaLSrRIY~vfts 541 (563)
+++|. .|..|+||.|-.|.+|.+.|.+ ..|++|-.+. +. .-|..++ -||+...+||+.-|-.
T Consensus 69 k~~f~-~L~~V~GIGpk~A~~iL~~f~~-~~l~~aI~~~--d~----~~L~~vp---------GIG~K~A~rI~~elk~ 130 (203)
T 1cuk_A 69 RTLFK-ELIKTNGVGPKLALAILSGMSA-QQFVNAVERE--EV----GALVKLP---------GIGKKTAERLIVEMKD 130 (203)
T ss_dssp HHHHH-HHHHSSSCCHHHHHHHHHHSCH-HHHHHHHHTT--CH----HHHHTST---------TCCHHHHHHHHHHHHH
T ss_pred HHHHH-HHhcCCCcCHHHHHHHHhhCCh-HHHHHHHHhC--CH----HHHhhCC---------CCCHHHHHHHHHHHHH
Confidence 56665 9999999999999999999976 3455555322 11 2333332 4888999999887743
No 15
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=60.20 E-value=6.7 Score=38.41 Aligned_cols=55 Identities=18% Similarity=0.362 Sum_probs=42.9
Q ss_pred HHHHHHHhhccCCCHHHHHHHHHhCCCHHHHHHHhcCCCcChHHHHhhhhcccccCCCCCcccccH-HHHHHHHHHH
Q 008500 464 SPWLKALVSIPKVQPRYAIAIWKKYPTMKALLSIYMDPSKSVHEKEFLLKDLTVDGLLGDNRKLGE-VCSKRVYRIL 539 (563)
Q Consensus 464 dvW~rqLqQI~rVS~eiA~AIv~~YPSP~~Lv~AY~~cs~Se~Eke~LLadlki~g~~g~~RRIGp-aLSrRIY~vf 539 (563)
......|..||||.+..|..++++|.|+..|.+|- .++ |+.+ ||+ .+.+.||.+|
T Consensus 164 ~~~~s~LdgIpGIG~k~ak~Ll~~FgSl~~i~~As------~Ee----L~~V-----------IG~~~~A~~I~~~f 219 (220)
T 2nrt_A 164 ESLRSVLDNVPGIGPIRKKKLIEHFGSLENIRSAS------LEE----IARV-----------IGSTEIARRVLDIL 219 (220)
T ss_dssp HHHHHHHTTSTTCCHHHHHHHHHHHCSHHHHHTSC------HHH----HHHH-----------HTCHHHHHHHHHHC
T ss_pred ccccccccCCCCcCHHHHHHHHHHcCCHHHHHhCC------HHH----HHHH-----------hChHHHHHHHHHHh
Confidence 34466789999999999999999999999887654 221 1111 888 9999999887
No 16
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=53.02 E-value=3.3 Score=37.70 Aligned_cols=29 Identities=24% Similarity=0.421 Sum_probs=23.2
Q ss_pred HHHHhhccCCCHHHHHHHHHh--CCCHHHHH
Q 008500 467 LKALVSIPKVQPRYAIAIWKK--YPTMKALL 495 (563)
Q Consensus 467 ~rqLqQI~rVS~eiA~AIv~~--YPSP~~Lv 495 (563)
.++|+++|||-+.+|.+|+++ |-|+..|+
T Consensus 62 ~~eL~~LpGiGp~~A~~II~~GpF~svedL~ 92 (134)
T 1s5l_U 62 IAAFIQYRGLYPTLAKLIVKNAPYESVEDVL 92 (134)
T ss_dssp GGGGGGSTTCTHHHHHHHHHTCCCSSGGGGG
T ss_pred HHHHHHCCCCCHHHHHHHHHcCCCCCHHHHH
Confidence 788999999999999999965 44444443
No 17
>3c1y_A DNA integrity scanning protein DISA; DNA damage, DNA repair, DNA-binding, DNA binding protein; HET: DNA 2BA; 2.10A {Thermotoga maritima} PDB: 3c1z_A* 3c21_A* 3c23_A*
Probab=47.83 E-value=7.3 Score=41.07 Aligned_cols=55 Identities=15% Similarity=0.320 Sum_probs=42.7
Q ss_pred HHHHhhccCCCHHHHHHHHHhCCCHHHHHHHhcCCCcChHHHHhhhhcccccCCCCCcccccHHHHHHHHHHHh
Q 008500 467 LKALVSIPKVQPRYAIAIWKKYPTMKALLSIYMDPSKSVHEKEFLLKDLTVDGLLGDNRKLGEVCSKRVYRILI 540 (563)
Q Consensus 467 ~rqLqQI~rVS~eiA~AIv~~YPSP~~Lv~AY~~cs~Se~Eke~LLadlki~g~~g~~RRIGpaLSrRIY~vft 540 (563)
.|+|..||+|.+.+|..++.+|.|++.++.|= .+| |. .++ -||+.=.++|+..+.
T Consensus 314 yRiLs~IPrl~~~iae~Lv~~FGsLq~Il~AS------~eE----L~--~Ve-------GIGe~rAr~IregL~ 368 (377)
T 3c1y_A 314 YRLLKTVARIPLSIGYNVVRMFKTLDQISKAS------VED----LK--KVE-------GIGEKRARAISESIS 368 (377)
T ss_dssp HHHHHHTSCCCHHHHHHHHHHHCSHHHHTTCC------HHH----HT--TST-------TCCHHHHHHHHHHHH
T ss_pred HHHHhhCCCCCHHHHHHHHHHhCCHHHHHhCC------HHH----HH--hcc-------CccHHHHHHHHHHHH
Confidence 56999999999999999999999999999864 221 12 233 477788888887664
No 18
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=44.28 E-value=51 Score=31.87 Aligned_cols=66 Identities=23% Similarity=0.260 Sum_probs=47.1
Q ss_pred hHHHHHHHhhccCCCHHHHHHHHHhCCCHHHHHHHhcCCCcChHHHHhhhhcccccCCCCCcccccHHHHHHHHHHHhcC
Q 008500 463 KSPWLKALVSIPKVQPRYAIAIWKKYPTMKALLSIYMDPSKSVHEKEFLLKDLTVDGLLGDNRKLGEVCSKRVYRILIAQ 542 (563)
Q Consensus 463 ~dvW~rqLqQI~rVS~eiA~AIv~~YPSP~~Lv~AY~~cs~Se~Eke~LLadlki~g~~g~~RRIGpaLSrRIY~vfts~ 542 (563)
..-|.+.|+.|+||-|-.|.+|++.|. +..|.+|-.+. -...|..++ -||+....||..-|-.+
T Consensus 83 Er~lf~~L~sv~GIGpk~A~~Ils~~~-~~~l~~aI~~~------d~~~L~~vp---------GIG~KtA~rIi~elk~k 146 (212)
T 2ztd_A 83 TRDLFLTLLSVSGVGPRLAMAALAVHD-APALRQVLADG------NVAALTRVP---------GIGKRGAERMVLELRDK 146 (212)
T ss_dssp HHHHHHHHHTSTTCCHHHHHHHHHHSC-HHHHHHHHHTT------CHHHHHTST---------TCCHHHHHHHHHHHTTT
T ss_pred HHHHHHHhcCcCCcCHHHHHHHHHhCC-HHHHHHHHHhC------CHHHHhhCC---------CCCHHHHHHHHHHHHHh
Confidence 556778888999999999999999985 55666555321 123444443 47888888988888766
Q ss_pred CC
Q 008500 543 SG 544 (563)
Q Consensus 543 Dp 544 (563)
=+
T Consensus 147 l~ 148 (212)
T 2ztd_A 147 VG 148 (212)
T ss_dssp CC
T ss_pred hc
Confidence 43
No 19
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=40.58 E-value=7 Score=33.50 Aligned_cols=20 Identities=25% Similarity=0.311 Sum_probs=18.7
Q ss_pred HHHHhhccCCCHHHHHHHHH
Q 008500 467 LKALVSIPKVQPRYAIAIWK 486 (563)
Q Consensus 467 ~rqLqQI~rVS~eiA~AIv~ 486 (563)
..+|++||||.+..|.+|+.
T Consensus 25 ~~eL~~lpGIG~~~A~~IV~ 44 (97)
T 3arc_U 25 IAAFIQYRGLYPTLAKLIVK 44 (97)
T ss_dssp GGGGGGSTTCTTHHHHHHHH
T ss_pred HHHHhHCCCCCHHHHHHHHH
Confidence 56899999999999999998
No 20
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus} PDB: 3o4x_E 2bap_D
Probab=37.30 E-value=49 Score=35.41 Aligned_cols=12 Identities=25% Similarity=0.266 Sum_probs=9.6
Q ss_pred CchHHHHHHHhh
Q 008500 277 SVGGHLLTRFAE 288 (563)
Q Consensus 277 s~GgqLl~~L~~ 288 (563)
-+-+.|++.|++
T Consensus 428 gv~D~Ll~~l~s 439 (457)
T 3obv_E 428 GVMDSLLEALQS 439 (457)
T ss_dssp CHHHHHHHHHHH
T ss_pred ccHHHHHHHHhc
Confidence 366889999987
No 21
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=36.74 E-value=7.3 Score=38.28 Aligned_cols=56 Identities=16% Similarity=0.295 Sum_probs=0.0
Q ss_pred HHHHHHhhccCCCHHHHHHHHHhCCCHHHHHHHhcCCCcChHHHHhhhhcccccCCCCCcccccHHHHHHHHHHHh
Q 008500 465 PWLKALVSIPKVQPRYAIAIWKKYPTMKALLSIYMDPSKSVHEKEFLLKDLTVDGLLGDNRKLGEVCSKRVYRILI 540 (563)
Q Consensus 465 vW~rqLqQI~rVS~eiA~AIv~~YPSP~~Lv~AY~~cs~Se~Eke~LLadlki~g~~g~~RRIGpaLSrRIY~vft 540 (563)
.....|..||||.+..|..++++|.|+..|.+|=. + +|. .- -||+.+.+.||.+|.
T Consensus 170 ~~~s~L~~IpGIG~k~ak~Ll~~FGSl~~i~~As~------e-------eL~------~V-GIG~~~A~~I~~~f~ 225 (226)
T 3c65_A 170 MFHSVLDDIPGVGEKRKKALLNYFGSVKKMKEATV------E-------ELQ------RA-NIPRAVAEKIYEKLH 225 (226)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred cccccccccCCCCHHHHHHHHHHhCCHHHHHhCCH------H-------HHH------Hc-CCCHHHHHHHHHHhh
Confidence 34567899999999999999999999998877642 1 121 12 388999999998874
No 22
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=32.82 E-value=30 Score=27.30 Aligned_cols=23 Identities=26% Similarity=0.359 Sum_probs=20.9
Q ss_pred HHHHHhhccCCCHHHHHHHHHhC
Q 008500 466 WLKALVSIPKVQPRYAIAIWKKY 488 (563)
Q Consensus 466 W~rqLqQI~rVS~eiA~AIv~~Y 488 (563)
-...|++||||.+..|.+|++.+
T Consensus 25 ~~~~L~~ipGIG~~~A~~Il~~r 47 (75)
T 2duy_A 25 SLEELMALPGIGPVLARRIVEGR 47 (75)
T ss_dssp CHHHHTTSTTCCHHHHHHHHHTC
T ss_pred CHHHHHhCCCCCHHHHHHHHHHc
Confidence 46789999999999999999987
No 23
>3sjd_D Golgi to ER traffic protein 2; ATPase, receptor complex, TA-protein biogenesis, GET pathway hydrolase-transport protein complex; HET: ADP; 4.60A {Saccharomyces cerevisiae}
Probab=32.43 E-value=45 Score=24.82 Aligned_cols=18 Identities=28% Similarity=0.597 Sum_probs=12.0
Q ss_pred cccHHHHHhhHHHHHHhH
Q 008500 210 KMTKEERMLFMEEKKKKK 227 (563)
Q Consensus 210 ~~~~~ek~r~~eeK~~~K 227 (563)
.++++||+|+..|+++.|
T Consensus 13 ~lsa~EkaRLrRERR~aK 30 (46)
T 3sjd_D 13 ELTEAEKRRLLRERRQKK 30 (46)
T ss_dssp --CHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHH
Confidence 567788888877776655
No 24
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=31.97 E-value=13 Score=31.34 Aligned_cols=14 Identities=29% Similarity=0.380 Sum_probs=8.6
Q ss_pred CCCCeeEeeCCCCC
Q 008500 33 PVAPTVLILDDDPT 46 (563)
Q Consensus 33 ~~~~~~~~~~~~~~ 46 (563)
+..|+|||+||||.
T Consensus 11 ~~~~~vlivdd~~~ 24 (145)
T 3kyj_B 11 GSPYNVMIVDDAAM 24 (145)
T ss_dssp CCSEEEEEECSCHH
T ss_pred CCCCeEEEEcCCHH
Confidence 44666666666664
No 25
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=30.85 E-value=64 Score=35.25 Aligned_cols=35 Identities=14% Similarity=0.263 Sum_probs=31.4
Q ss_pred HHHHHHhhccCCCHHHHHHHHHh--CCCHHHHHHHhc
Q 008500 465 PWLKALVSIPKVQPRYAIAIWKK--YPTMKALLSIYM 499 (563)
Q Consensus 465 vW~rqLqQI~rVS~eiA~AIv~~--YPSP~~Lv~AY~ 499 (563)
.+.++|+.|+||.|..|.+|.+. +-|+..|.+|..
T Consensus 90 ~~~~~l~~v~GvGpk~A~~~~~~lg~~~~~~l~~a~~ 126 (575)
T 3b0x_A 90 RGVLEVMEVPGVGPKTARLLYEGLGIDSLEKLKAALD 126 (575)
T ss_dssp HHHHHHHTSTTTCHHHHHHHHHTSCCCSHHHHHHHHH
T ss_pred HHHHHHhcCCCcCHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 35788999999999999999996 799999999883
No 26
>3zs9_C Golgi to ER traffic protein 2; hydrolase-transport protein complex, membrane protein, targe factor; HET: ADP; 2.10A {Saccharomyces cerevisiae}
Probab=29.03 E-value=61 Score=23.32 Aligned_cols=18 Identities=28% Similarity=0.597 Sum_probs=12.2
Q ss_pred cccHHHHHhhHHHHHHhH
Q 008500 210 KMTKEERMLFMEEKKKKK 227 (563)
Q Consensus 210 ~~~~~ek~r~~eeK~~~K 227 (563)
.++++|++|+..|+++.|
T Consensus 3 els~~ekaRlrRERR~aK 20 (38)
T 3zs9_C 3 ELTEAEKRRLLRERRQKK 20 (38)
T ss_dssp -CCHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHH
Confidence 356778888777776655
No 27
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=24.82 E-value=85 Score=34.37 Aligned_cols=33 Identities=15% Similarity=0.292 Sum_probs=30.4
Q ss_pred HHHHHhhccCCCHHHHHHHHHh-CCCHHHHHHHh
Q 008500 466 WLKALVSIPKVQPRYAIAIWKK-YPTMKALLSIY 498 (563)
Q Consensus 466 W~rqLqQI~rVS~eiA~AIv~~-YPSP~~Lv~AY 498 (563)
+.+.|+.|+||.+..|.+|.+. |-|+..|.+|-
T Consensus 95 ~~~~L~~v~GVGpk~A~~i~~~G~~s~edL~~a~ 128 (578)
T 2w9m_A 95 GLLDLLGVRGLGPKKIRSLWLAGIDSLERLREAA 128 (578)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHTTCCSHHHHHHHH
T ss_pred HHHHHhCCCCcCHHHHHHHHHcCCCCHHHHHHHH
Confidence 6788999999999999999887 89999999986
No 28
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=22.98 E-value=29 Score=28.71 Aligned_cols=19 Identities=16% Similarity=0.205 Sum_probs=9.6
Q ss_pred HHHHHHHhhCC-CCcEEEEec
Q 008500 347 DHVSLVRRHYP-SHTICYLTN 366 (563)
Q Consensus 347 e~v~rLk~~~P-~~kliyLVE 366 (563)
+.+..|+.. + ...++++..
T Consensus 75 ~~~~~l~~~-~~~~~ii~ls~ 94 (137)
T 2pln_A 75 SFVSRIKEK-HSSIVVLVSSD 94 (137)
T ss_dssp HHHHHHHHH-STTSEEEEEES
T ss_pred HHHHHHHhc-CCCccEEEEeC
Confidence 444555555 5 555555543
No 29
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=21.76 E-value=90 Score=35.21 Aligned_cols=55 Identities=20% Similarity=0.242 Sum_probs=42.1
Q ss_pred HHHHh--hccCCCHHHHHHHHHhCCCHHHHHHHhcCCCcChHHHHhhhhcccccCCCCCcccccHHHHHHHHHHHh
Q 008500 467 LKALV--SIPKVQPRYAIAIWKKYPTMKALLSIYMDPSKSVHEKEFLLKDLTVDGLLGDNRKLGEVCSKRVYRILI 540 (563)
Q Consensus 467 ~rqLq--QI~rVS~eiA~AIv~~YPSP~~Lv~AY~~cs~Se~Eke~LLadlki~g~~g~~RRIGpaLSrRIY~vft 540 (563)
.|-|. -|++|.+..|..++.+|+|...|++|- .+ -|..+ .-||+.+++.||.+|.
T Consensus 509 ~R~L~algi~~VG~~~Ak~La~~Fgsl~~l~~As------~e----eL~~i---------~GIG~~~A~sI~~ff~ 565 (671)
T 2owo_A 509 ARFLYALGIREVGEATAAGLAAYFGTLEALEAAS------IE----ELQKV---------PDVGIVVASHVHNFFA 565 (671)
T ss_dssp HHHHHHTTCTTCCHHHHHHHHHHHCSHHHHHTCC------HH----HHTTS---------TTCCHHHHHHHHHHHT
T ss_pred hheehhhcccCccHHHHHHHHHHcCCHHHHHhCC------HH----HHhhc---------CCCCHHHHHHHHHHHH
Confidence 34453 799999999999999999999887653 21 12222 2589999999999994
No 30
>4efa_G V-type proton ATPase subunit G; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_K 2k88_A 2kwy_A
Probab=21.49 E-value=2.2e+02 Score=25.08 Aligned_cols=39 Identities=18% Similarity=0.084 Sum_probs=22.5
Q ss_pred HHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008500 213 KEERMLFMEEKKKKKEEEKLRKAALKAEAAESKKLQKEM 251 (563)
Q Consensus 213 ~~ek~r~~eeK~~~Ke~eK~~K~a~Ka~~ae~Kk~eke~ 251 (563)
++|+++..-=.++.+...++.|+|.-+.++++.....++
T Consensus 17 ~AEk~A~~iV~~ARk~k~~rLKqAK~EA~~EIe~yR~qk 55 (119)
T 4efa_G 17 QAEKEAHEIVSKARKYRQDKLKQAKTDAAKEIDSYKIQK 55 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555444455555566666777777777666544443
No 31
>1ois_A DNA topoisomerase I; DNA-binding protein; HET: DNA; 1.90A {Saccharomyces cerevisiae} SCOP: e.15.1.1
Probab=20.51 E-value=35 Score=33.45 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=10.6
Q ss_pred hhHHHHHHhHHHHHHHHHHHHHHHH
Q 008500 218 LFMEEKKKKKEEEKLRKAALKAEAA 242 (563)
Q Consensus 218 r~~eeK~~~Ke~eK~~K~a~Ka~~a 242 (563)
-..++|+++|..-+++|++.|++..
T Consensus 100 ~~~~~~e~kk~~skEEKk~~Keek~ 124 (223)
T 1ois_A 100 YFQLQKEQKKQLTSQEKKQIRLERE 124 (223)
T ss_dssp HHHHHHHHHTTC---CHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3334444445555555555555433
Done!