Query 008501
Match_columns 563
No_of_seqs 343 out of 1244
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 05:02:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008501.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008501hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ayd_A WRKY transcription fact 100.0 1.5E-34 5.1E-39 241.4 5.3 76 365-440 1-76 (76)
2 1wj2_A Probable WRKY transcrip 100.0 3E-34 1E-38 240.6 4.1 75 365-439 4-78 (78)
3 2ayd_A WRKY transcription fact 100.0 1E-29 3.6E-34 212.2 5.4 63 214-276 12-75 (76)
4 1wj2_A Probable WRKY transcrip 100.0 1.3E-29 4.5E-34 212.5 5.8 63 214-276 15-78 (78)
5 2rpr_A Flywch-type zinc finger 67.5 2.9 9.8E-05 34.5 2.5 48 215-274 23-73 (87)
6 2rpr_A Flywch-type zinc finger 67.0 2.6 8.7E-05 34.8 2.1 60 366-438 12-74 (87)
7 1cz6_A Protein (androctonin); 26.1 16 0.00055 24.5 0.3 8 238-245 16-23 (26)
8 1odh_A MGCM1; transcription fa 25.5 38 0.0013 32.2 2.8 23 256-278 138-160 (174)
9 1xiw_B T-cell surface glycopro 12.2 36 0.0012 27.9 -0.7 28 217-244 17-54 (79)
10 1odh_A MGCM1; transcription fa 11.7 1.7E+02 0.0057 27.9 3.6 39 401-442 122-161 (174)
No 1
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}
Probab=100.00 E-value=1.5e-34 Score=241.42 Aligned_cols=76 Identities=66% Similarity=1.271 Sum_probs=73.2
Q ss_pred CceeeeecccccCCCccchhhhccCcccCCCCCCCcccccCCCCCccccceeccCCCCCeEEEEEeccCCCCCCCC
Q 008501 365 PRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPTA 440 (563)
Q Consensus 365 prvvv~t~se~d~~dDGy~WRKYGQK~ikGn~~PRsYYrCt~~gC~arK~Ver~~~D~~~~~~tY~G~HnH~~P~~ 440 (563)
.||+|++.+++++++|||+|||||||.|||+++||+|||||.+||+|+|+|||+.+|+.+++|||+|+|||+.|.+
T Consensus 1 ~r~~v~t~~~~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~~ 76 (76)
T 2ayd_A 1 SRIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMPPG 76 (76)
T ss_dssp CEEEEEEECSSSCCCCSSCEEEEEEECCTTCSSCEEEEEECSTTCCCEEEEEECSSSTTEEEEEEESCCSSCCCCC
T ss_pred CeEEEEecCCCCcCCCCchhhhCcccccCCCCCceeEeEcCCCCCCceeeEEEECCCCCEEEEEEccCcCCCCCCC
Confidence 3799999999999999999999999999999999999999999999999999999999999999999999999863
No 2
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*
Probab=100.00 E-value=3e-34 Score=240.56 Aligned_cols=75 Identities=79% Similarity=1.317 Sum_probs=69.7
Q ss_pred CceeeeecccccCCCccchhhhccCcccCCCCCCCcccccCCCCCccccceeccCCCCCeEEEEEeccCCCCCCC
Q 008501 365 PRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPT 439 (563)
Q Consensus 365 prvvv~t~se~d~~dDGy~WRKYGQK~ikGn~~PRsYYrCt~~gC~arK~Ver~~~D~~~~~~tY~G~HnH~~P~ 439 (563)
.+|+|+|.+++++++|||+|||||||.|||+++||+|||||.+||+|+|+|||+.+|+.+++|||+|+|||+.|.
T Consensus 4 ~~~~~~t~s~~~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 78 (78)
T 1wj2_A 4 GSSGVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA 78 (78)
T ss_dssp ----CCCCCCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred ceEEEeccCCCCcCCCCchhhhCcccccCCCcCeeEEeecCcCCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCCC
Confidence 478999999999999999999999999999999999999999999999999999999999999999999999884
No 3
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}
Probab=99.96 E-value=1e-29 Score=212.24 Aligned_cols=63 Identities=56% Similarity=1.060 Sum_probs=59.4
Q ss_pred CCCCCCccccccCCcccCCCCCCCCcccccCCccceeeeEEecc-CCcEEEEEecCCCCCCCCC
Q 008501 214 MPSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSH-DGQITEIIYKGTHDHPKPQ 276 (563)
Q Consensus 214 ~~~~DGy~WRKYGQK~IkGs~~pRsYYrCt~~~C~akK~Ver~~-Dg~i~~i~Y~G~HnH~~P~ 276 (563)
...+|||+|||||||.|||++|||+|||||+.+|+|+|+|||+. |+++++|+|+|+|||+.|+
T Consensus 12 ~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 75 (76)
T 2ayd_A 12 DIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMPP 75 (76)
T ss_dssp SCCCCSSCEEEEEEECCTTCSSCEEEEEECSTTCCCEEEEEECSSSTTEEEEEEESCCSSCCCC
T ss_pred CcCCCCchhhhCcccccCCCCCceeEeEcCCCCCCceeeEEEECCCCCEEEEEEccCcCCCCCC
Confidence 35789999999999999999999999999999999999999974 8899999999999999885
No 4
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*
Probab=99.95 E-value=1.3e-29 Score=212.49 Aligned_cols=63 Identities=54% Similarity=1.022 Sum_probs=59.2
Q ss_pred CCCCCCccccccCCcccCCCCCCCCcccccCCccceeeeEEec-cCCcEEEEEecCCCCCCCCC
Q 008501 214 MPSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERS-HDGQITEIIYKGTHDHPKPQ 276 (563)
Q Consensus 214 ~~~~DGy~WRKYGQK~IkGs~~pRsYYrCt~~~C~akK~Ver~-~Dg~i~~i~Y~G~HnH~~P~ 276 (563)
...+|||+|||||||.|||++|||+|||||+++|+|+|+|||+ .|+++++|+|+|+|||+.|.
T Consensus 15 ~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 78 (78)
T 1wj2_A 15 DLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA 78 (78)
T ss_dssp CCCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred CcCCCCchhhhCcccccCCCcCeeEEeecCcCCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCCC
Confidence 3578999999999999999999999999999999999999996 58899999999999999873
No 5
>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=67.47 E-value=2.9 Score=34.54 Aligned_cols=48 Identities=17% Similarity=0.369 Sum_probs=31.5
Q ss_pred CCCCCccccccCCcccCCCCCCCCcccccC---CccceeeeEEeccCCcEEEEEecCCCCCCC
Q 008501 215 PSDDGYNWRKYGQKHVKGSEFPRSYYKCTH---PNCEVKKLFERSHDGQITEIIYKGTHDHPK 274 (563)
Q Consensus 215 ~~~DGy~WRKYGQK~IkGs~~pRsYYrCt~---~~C~akK~Ver~~Dg~i~~i~Y~G~HnH~~ 274 (563)
..-|||...+--+ ...+.|.+|+. .+|.|+=.... ++ ++..+.|||++
T Consensus 23 Lv~~Gy~Y~~~~~------~~~~~yWrC~~~~~~kCrARi~T~~--~~----~~~~~~HnH~p 73 (87)
T 2rpr_A 23 LVHESFLYRKEKA------AGEKVYWMCRDQARLGCRSRAITQG--HR----IMVMRSHCHQP 73 (87)
T ss_dssp EEETTEEEEEEEE------CSSCEEEEEGGGTTSCCCCEEEEET--TE----EEECSCCSSCC
T ss_pred EEECCEEEEeeec------CCCcEEEEecCCCCCCCCEEEEEcC--CC----EECCCCcCCCC
Confidence 4568997776321 23468999987 37999744332 22 44678999974
No 6
>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=67.03 E-value=2.6 Score=34.84 Aligned_cols=60 Identities=18% Similarity=0.414 Sum_probs=37.2
Q ss_pred ceeeeecccccCCCccchhhhccCcccCCCCCCCcccccCC---CCCccccceeccCCCCCeEEEEEeccCCCCCC
Q 008501 366 RVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTN---AGCPVRKHVERASHDPKAVITTYEGKHNHDVP 438 (563)
Q Consensus 366 rvvv~t~se~d~~dDGy~WRKYGQK~ikGn~~PRsYYrCt~---~gC~arK~Ver~~~D~~~~~~tY~G~HnH~~P 438 (563)
.++.....-.-++-|||...+--+ ...+.|.+|+. .+|.|+=.... ++ + ...+.|||++.
T Consensus 12 ~fv~s~rG~~~Lv~~Gy~Y~~~~~------~~~~~yWrC~~~~~~kCrARi~T~~--~~---~--~~~~~HnH~p~ 74 (87)
T 2rpr_A 12 EFLRTSLGGRFLVHESFLYRKEKA------AGEKVYWMCRDQARLGCRSRAITQG--HR---I--MVMRSHCHQPD 74 (87)
T ss_dssp EEEEETTTEEEEEETTEEEEEEEE------CSSCEEEEEGGGTTSCCCCEEEEET--TE---E--EECSCCSSCCC
T ss_pred EEEEcCCCCcEEEECCEEEEeeec------CCCcEEEEecCCCCCCCCEEEEEcC--CC---E--ECCCCcCCCCc
Confidence 444433344457789998775321 12468999995 58999855442 12 3 35688999654
No 7
>1cz6_A Protein (androctonin); peptide, beta sheet, toxin; NMR {Androctonus australis} SCOP: j.3.1.3
Probab=26.06 E-value=16 Score=24.49 Aligned_cols=8 Identities=63% Similarity=1.381 Sum_probs=6.6
Q ss_pred CcccccCC
Q 008501 238 SYYKCTHP 245 (563)
Q Consensus 238 sYYrCt~~ 245 (563)
.|||||.+
T Consensus 16 cyykctnr 23 (26)
T 1cz6_A 16 CYYKCTNR 23 (26)
T ss_dssp CEEEECCC
T ss_pred eEEEccCC
Confidence 59999974
No 8
>1odh_A MGCM1; transcription factor/DNA, transcription factor, DNA-binding domain, protein/DNA complex; 2.85A {Mus musculus} SCOP: d.239.1.1
Probab=25.48 E-value=38 Score=32.16 Aligned_cols=23 Identities=43% Similarity=0.827 Sum_probs=16.6
Q ss_pred ccCCcEEEEEecCCCCCCCCCCC
Q 008501 256 SHDGQITEIIYKGTHDHPKPQLS 278 (563)
Q Consensus 256 ~~Dg~i~~i~Y~G~HnH~~P~~~ 278 (563)
.+||.....--+|.|+||+|...
T Consensus 138 rh~~~~ifFqaKG~HDHpRPe~k 160 (174)
T 1odh_A 138 RHDGRFIFFQSKGEHDHPRPETK 160 (174)
T ss_dssp EECSSBEEEEEECCCCSCCCCCH
T ss_pred EEcCCEEEEecccccCCCCCCCc
Confidence 35555555556899999999753
No 9
>1xiw_B T-cell surface glycoprotein CD3 delta chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4
Probab=12.19 E-value=36 Score=27.89 Aligned_cols=28 Identities=18% Similarity=0.309 Sum_probs=19.2
Q ss_pred CCCccccccCCcc--------cC--CCCCCCCcccccC
Q 008501 217 DDGYNWRKYGQKH--------VK--GSEFPRSYYKCTH 244 (563)
Q Consensus 217 ~DGy~WRKYGQK~--------Ik--Gs~~pRsYYrCt~ 244 (563)
..++.|-|-|... +. ...-||+||.|.-
T Consensus 17 ~~~i~W~k~~~~i~~~~~~tL~L~~~~~d~sG~Y~C~~ 54 (79)
T 1xiw_B 17 NTSITWVEGTVGTLLSDITRLDLGKRILDPRGIYRCNG 54 (79)
T ss_dssp SSCEEEEEECCCEEEGGGTEEEEEEGGGCCEEEEEEC-
T ss_pred CCCEEEEECCcccccccCCeEEeccCcCCCCeEEEecC
Confidence 4678999988642 22 3445999999953
No 10
>1odh_A MGCM1; transcription factor/DNA, transcription factor, DNA-binding domain, protein/DNA complex; 2.85A {Mus musculus} SCOP: d.239.1.1
Probab=11.71 E-value=1.7e+02 Score=27.87 Aligned_cols=39 Identities=28% Similarity=0.595 Sum_probs=26.2
Q ss_pred ccccC-CCCCccccceeccCCCCCeEEEEEeccCCCCCCCCCC
Q 008501 401 YYKCT-NAGCPVRKHVERASHDPKAVITTYEGKHNHDVPTART 442 (563)
Q Consensus 401 YYrCt-~~gC~arK~Ver~~~D~~~~~~tY~G~HnH~~P~~r~ 442 (563)
-+.|. +-|=||+ +..| +|...+...=+|.|+|+.|.+..
T Consensus 122 ~~~Crgh~GyPVT-hFWr--h~~~~ifFqaKG~HDHpRPe~k~ 161 (174)
T 1odh_A 122 LIPCRGHGGFPVT-NFWR--HDGRFIFFQSKGEHDHPRPETKL 161 (174)
T ss_dssp EECCCTBTTBCCE-EEEE--ECSSBEEEEEECCCCSCCCCCHH
T ss_pred eEeccCcCCCcce-EEEE--EcCCEEEEecccccCCCCCCCcc
Confidence 45565 3466663 5555 35555667789999999998753
Done!