BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008503
(563 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DA1|A Chain A, X-Ray Structure Of The Glycerol-3-Phosphate Dehydrogenase
From Bacillus Halodurans Complexed With Fad. Northeast
Structural Genomics Consortium Target Bhr167
Length = 561
Score = 132 bits (331), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 111/406 (27%), Positives = 176/406 (43%), Gaps = 19/406 (4%)
Query: 141 HALEERKQAKDRSLKGAVVYYDGQMNDSRXXXXXXXXXXXXXXXXXXXXEVISLIKDEAS 200
LE+ + +LKG +Y + + +D+R +V S I D+
Sbjct: 143 QTLEKEPLLRKENLKGGGIYVEYRTDDARLTLEIXKEAVARGAVALNYXKVESFIYDQG- 201
Query: 201 NRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQPMICPSSGVHIVLPDY 260
+++G ++ L+ YAK VVNAAGP+ D++R+ + S GVH+V+
Sbjct: 202 -KVVGVVAKDRLTDTTHTIYAKKVVNAAGPWVDTLREKDRSKHGKYLKLSKGVHLVVDQS 260
Query: 261 YSPEGMGLIVPKTKDGRVVFMLPWLGRTVAGTTDS--DTVITLLPEPHEDEIQFILDAIS 318
P + DGR +F +P G+T GTTD+ D I ED + A
Sbjct: 261 RFPLRQAVYFDTESDGRXIFAIPREGKTYIGTTDTFYDKDIASPRXTVEDRDYILAAANY 320
Query: 319 DYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCEDFPGLVTITGGKWTTYRS 378
+ ++++ DV S+W+G+RPL + K +E +D + D GL++I GGK T YR
Sbjct: 321 XFPSLRLTADDVESSWAGLRPLIHEEGKKASEISRKDEIFFSD-SGLISIAGGKLTGYRK 379
Query: 379 MAEDAVNAAIKSGKLNPSNGCLTQNLRLVGGDGWDPSSFTVLAQQYVRMKRTYGGKFVPG 438
AE V+A + LN + C T +RL GG F + R G
Sbjct: 380 XAERTVDAVAQG--LNVNEPCTTAAIRLSGGLAEGAQGFPRFLDEASRKGAKLG------ 431
Query: 439 VMDTAVAKHLSHAYGIMAEQVAIIAQNEGLGKRLAHGYP-FLEAEVAYCARNEYCESAVD 497
D + L+ YG + V A EG + +G P L ++ Y E + +D
Sbjct: 432 -FDADEVRRLAKLYGSNVDHVLNYAY-EGKEEAEHYGLPALLLGQLQYGVEQEXVATPLD 489
Query: 498 FVARRCRLAFLDTDAAGRALPRIIEIMATEHKW---DKSRRKQELQ 540
F RR F + + ++ A E W +K+R + EL+
Sbjct: 490 FFVRRTGALFFNISLVHQWKEAVLRWXAEEFSWTEEEKTRFQNELE 535
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 45/83 (54%), Positives = 58/83 (69%), Gaps = 7/83 (8%)
Query: 64 IAANNSNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRY 123
I + LD+LVIGGG TG G+ALDA RG++ GLVE DF+SGTSSRSTKL+HGG+RY
Sbjct: 11 IGEXSEKQLDLLVIGGGITGAGIALDAQVRGIQTGLVEXNDFASGTSSRSTKLVHGGLRY 70
Query: 124 LEKAVFNLDYGQLKLVFHALEER 146
L++ ++KLV +ER
Sbjct: 71 LKQF-------EIKLVAEVGKER 86
>pdb|2RGO|A Chain A, Structure Of Alpha-Glycerophosphate Oxidase From
Streptococcus Sp.: A Template For The Mitochondrial
Alpha- Glycerophosphate Dehydrogenase
pdb|2RGO|B Chain B, Structure Of Alpha-Glycerophosphate Oxidase From
Streptococcus Sp.: A Template For The Mitochondrial
Alpha- Glycerophosphate Dehydrogenase
Length = 607
Score = 125 bits (314), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 133/574 (23%), Positives = 228/574 (39%), Gaps = 150/574 (26%)
Query: 94 GLRVGLVEREDFSSGTSSRSTKLIHGGVRYL-------------EKAV------------ 128
G++ GL+E +DF+ GTSSRSTKL+HGG+RYL E+AV
Sbjct: 41 GIKTGLIEMQDFAEGTSSRSTKLVHGGIRYLKTFDVEVVADTVGERAVVQGIAPHIPKPD 100
Query: 129 --------------FNL-------------------DYGQLKLVFHALEERKQ-AKDRSL 154
FN+ Y L + ER+ K L
Sbjct: 101 PMLLPIYEDEGATTFNMFSVKVAMDLYDKLANVTGTKYENYTLTPEEVLEREPFLKKEGL 160
Query: 155 KGAVVYYDGQMNDSRXXXXXXXXXXXXXXXXXXXXEVISLIKDEASNRIIGARIRNNLSG 214
KGA VY D + ND+R + + + + ++I+G + R+ L+
Sbjct: 161 KGAGVYLDFRNNDARLVIDNIKKAAEDGAYLVSKMKAVGFLYE--GDQIVGVKARDLLTD 218
Query: 215 KEFDTYAKVVVNAAGPFCDSVRKLA-DQNVQPMICPSSGVHIVLPDYYSPEGMGLIVPK- 272
+ + AK+V+N +GP+ D VR L + V P + P+ G+H+V+ + L VP+
Sbjct: 219 EVIEIKAKLVINTSGPWVDKVRNLNFTRPVSPKMRPTKGIHLVV------DAKKLPVPQP 272
Query: 273 ------TKDGRVVFMLPWLGRTVAGTTDSDTVITLL-PEPHEDEIQFILDAISD-YLNVK 324
+DGR+VF +P +T GTTD+D P+ ++++ ++LD I+ Y
Sbjct: 273 TYFDTGKQDGRMVFAIPRENKTYFGTTDTDYQGDFTDPKVTQEDVDYLLDVINHRYPEAN 332
Query: 325 VRRTDVLSAWSGIRPLAMDPSA-------------------------------------- 346
+ D+ ++W+G+RPL + S
Sbjct: 333 ITLADIEASWAGLRPLLIGNSGSDYNGGDNGSISDKSFNKVVDTVSEYKENKVSRAEVED 392
Query: 347 -----------KNTESISRDHVVCEDFPGLVTITGGKWTTYRSMAEDAVNAAIKSGKLNP 395
K +ISR + + GL+T++GGK T YR MAE A+ + L
Sbjct: 393 VLNHLENSRDEKAPSTISRGSSLEREPDGLLTLSGGKITDYRKMAEGALR--LIRQLLKE 450
Query: 396 SNGCLTQNL----RLVGGDGWDPSSFTVLAQQYVRMKRTYGGKFVPGVMDTAVAKHLSHA 451
G T+ + + G +DP+ + + + V ++ A +++
Sbjct: 451 EYGIETKEIDSKKYQISGGNFDPTKLEETVTELAK-------EGVAAGLEEEDATYIADF 503
Query: 452 YGIMAEQVAIIAQNEGLGKRLAHGYPFL----EAEVAYCARNEYCESAVDFVARRCRLAF 507
YG A ++ +A K +A YP L A + Y E + D++ RR
Sbjct: 504 YGTNARRIFELA------KEMAP-YPGLSLAESARLRYGLEEEMVLAPGDYLIRRTNHLL 556
Query: 508 LDTDAAGRALPRIIEIMATEHKWDKSRRKQELQK 541
+ D +I+ +A W + + Q+ ++
Sbjct: 557 FERDQLDEIKQPVIDAIAEYFGWTEEEKAQQTKR 590
>pdb|2RGH|A Chain A, Structure Of Alpha-Glycerophosphate Oxidase From
Streptococcus Sp.: A Template For The Mitochondrial
Alpha- Glycerophosphate Dehydrogenase
Length = 571
Score = 115 bits (287), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 102/424 (24%), Positives = 187/424 (44%), Gaps = 43/424 (10%)
Query: 141 HALEERKQAKDRSLKGAVVYYDGQMNDSRXXXXXXXXXXXXXXXXXXXXEVISLIKDEAS 200
LE K LKGA VY D + ND+R + + + +
Sbjct: 161 EVLEREPFLKKEGLKGAGVYLDFRNNDARLVIDNIKKAAEDGAYLVSKXKAVGFLYE--G 218
Query: 201 NRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLA-DQNVQPMICPSSGVHIVLPD 259
++I+G + R+ L+ + + AK+V+N +GP+ D VR L + V P P+ G+H+V+
Sbjct: 219 DQIVGVKARDLLTDEVIEIKAKLVINTSGPWVDKVRNLNFTRPVSPKXRPTKGIHLVV-- 276
Query: 260 YYSPEGMGLIVPK-------TKDGRVVFMLPWLGRTVAGTTDSDTVITLL-PEPHEDEIQ 311
+ L VP+ +DGR VF +P +T GTTD+D P+ ++++
Sbjct: 277 ----DAKKLPVPQPTYFDTGKQDGRXVFAIPRENKTYFGTTDTDYQGDFTDPKVTQEDVD 332
Query: 312 FILDAISD-YLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCEDFPGLVTITG 370
++LD I+ Y + D+ ++W+G+RPL + S + +ISR + + GL+T++G
Sbjct: 333 YLLDVINHRYPEANITLADIEASWAGLRPLLIGNSGSPS-TISRGSSLEREPDGLLTLSG 391
Query: 371 GKWTTYRSMAEDAVNAAIKSGKLNPSNGCLTQNL----RLVGGDGWDPSSFTVLAQQYVR 426
GK T YR AE A+ + L G T+ + + G +DP+ + +
Sbjct: 392 GKITDYRKXAEGALR--LIRQLLKEEYGIETKEIDSKKYQISGGNFDPTKLEETVTELAK 449
Query: 427 MKRTYGGKFVPGVMDTAVAKHLSHAYGIMAEQVAIIAQNEGLGKRLAHGYPFL----EAE 482
+ V ++ A +++ YG A ++ +A+ YP L A
Sbjct: 450 -------EGVAAGLEEEDATYIADFYGTNARRIFELAKEXA-------PYPGLSLAESAR 495
Query: 483 VAYCARNEYCESAVDFVARRCRLAFLDTDAAGRALPRIIEIMATEHKWDKSRRKQELQKA 542
+ Y E + D++ RR + D +I+ +A W + + Q+ ++
Sbjct: 496 LRYGLEEEXVLAPGDYLIRRTNHLLFERDQLDEIKQPVIDAIAEYFGWTEEEKAQQTKRL 555
Query: 543 KEFL 546
+ +
Sbjct: 556 EALI 559
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 21/32 (65%), Positives = 29/32 (90%)
Query: 94 GLRVGLVEREDFSSGTSSRSTKLIHGGVRYLE 125
G++ GL+E +DF+ GTSSRSTKL+HGG+RYL+
Sbjct: 55 GIKTGLIEXQDFAEGTSSRSTKLVHGGIRYLK 86
>pdb|2QCU|A Chain A, Crystal Structure Of Glycerol-3-Phosphate Dehydrogenase
From Escherichia Coli
pdb|2QCU|B Chain B, Crystal Structure Of Glycerol-3-Phosphate Dehydrogenase
From Escherichia Coli
pdb|2R45|A Chain A, Crystal Structure Of Escherichia Coli Glycerol-3-Phosphate
Dehydrogenase In Complex With 2-Phospho-D-Glyceric Acid
pdb|2R45|B Chain B, Crystal Structure Of Escherichia Coli Glycerol-3-Phosphate
Dehydrogenase In Complex With 2-Phospho-D-Glyceric Acid
pdb|2R46|A Chain A, Crystal Structure Of Escherichia Coli Glycerol-3-Phosphate
Dehydrogenase In Complex With 2-Phosphopyruvic Acid.
pdb|2R46|B Chain B, Crystal Structure Of Escherichia Coli Glycerol-3-Phosphate
Dehydrogenase In Complex With 2-Phosphopyruvic Acid.
pdb|2R4E|A Chain A, Crystal Structure Of Escherichia Coli Glycerol-3-Phosphate
Dehydrogenase In Complex With Dhap
pdb|2R4E|B Chain B, Crystal Structure Of Escherichia Coli Glycerol-3-Phosphate
Dehydrogenase In Complex With Dhap
Length = 501
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 93/336 (27%), Positives = 162/336 (48%), Gaps = 61/336 (18%)
Query: 213 SGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQPMICPS-------SGVHIVLPDYYSPEG 265
+GK++ A+ +VNA GP+ V++ D M PS G HIV+P ++ +
Sbjct: 191 TGKKYSWQARGLVNATGPW---VKQFFDDG---MHLPSPYGIRLIKGSHIVVPRVHTQKQ 244
Query: 266 MGLIVPKTKDGRVVFMLPWLGR-TVAGTTDSDTVITLLPEP-----HEDEIQFILDAISD 319
++ + +D R+VF++PW+ ++ GTTD + +P E EI ++L+ +
Sbjct: 245 AYIL--QNEDKRIVFVIPWMDEFSIIGTTD----VEYKGDPKAVKIEESEINYLLNVYNT 298
Query: 320 YLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVV-CEDFPG---LVTITGGKWTT 375
+ ++ R D++ +SG+RPL D S + ++I+RD+ + D G L+++ GGK TT
Sbjct: 299 HFKKQLSRDDIVWTYSGVRPLCDDES-DSPQAITRDYTLDIHDENGKAPLLSVFGGKLTT 357
Query: 376 YRSMAEDAVNAAIKSGKLNPS----NGCLTQNLRLVGG--DGWDPSSFTVLAQQYVRMKR 429
YR +AE A+ KL P T+ L GG +G D + R++R
Sbjct: 358 YRKLAEHALE------KLTPYYQGIGPAWTKESVLPGGAIEG-DRDDYA------ARLRR 404
Query: 430 TYGGKFVPGVMDTAVAKHLSHAYGIMAEQVAIIAQNEGLGKRLAH--GYPFLEAEVAYCA 487
Y + ++A+H + YG +E ++ N G L G+ F EAE+ Y
Sbjct: 405 RY------PFLTESLARHYARTYGSNSE---LLLGNAGTVSDLGEDFGHEFYEAELKYLV 455
Query: 488 RNEYCESAVDFVARRCRLA-FLDTDAAGRALPRIIE 522
+E+ A D + RR + +L+ D R ++E
Sbjct: 456 DHEWVRRADDALWRRTKQGMWLNADQQSRVSQWLVE 491
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 33/53 (62%), Gaps = 7/53 (13%)
Query: 95 LRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERK 147
L V ++E +D + TSS S+KLIHGG+RYLE F +LV AL ER+
Sbjct: 27 LSVLMLEAQDLACATSSASSKLIHGGLRYLEHYEF-------RLVSEALAERE 72
>pdb|2R4J|A Chain A, Crystal Structure Of Escherichia Coli Semet Substituted
Glycerol-3-Phosphate Dehydrogenase In Complex With Dhap
pdb|2R4J|B Chain B, Crystal Structure Of Escherichia Coli Semet Substituted
Glycerol-3-Phosphate Dehydrogenase In Complex With Dhap
Length = 501
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 90/330 (27%), Positives = 156/330 (47%), Gaps = 49/330 (14%)
Query: 213 SGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQPM-ICPSSGVHIVLPDYYSPEGMGLIVP 271
+GK++ A+ +VNA GP+ P I G HIV+P ++ + ++
Sbjct: 191 TGKKYSWQARGLVNATGPWVKQFFDDGXHLPSPYGIRLIKGSHIVVPRVHTQKQAYIL-- 248
Query: 272 KTKDGRVVFMLPWLGR-TVAGTTDSDTVITLLPEP-----HEDEIQFILDAISDYLNVKV 325
+ +D R+VF++PW ++ GTTD + +P E EI ++L+ + + ++
Sbjct: 249 QNEDKRIVFVIPWXDEFSIIGTTD----VEYKGDPKAVKIEESEINYLLNVYNTHFKKQL 304
Query: 326 RRTDVLSAWSGIRPLAMDPSAKNTESISRDHVV-CEDFPG---LVTITGGKWTTYRSMAE 381
R D++ +SG+RPL D S + ++I+RD+ + D G L+++ GGK TTYR +AE
Sbjct: 305 SRDDIVWTYSGVRPLCDDES-DSPQAITRDYTLDIHDENGKAPLLSVFGGKLTTYRKLAE 363
Query: 382 DAVNAAIKSGKLNPS----NGCLTQNLRLVGG--DGWDPSSFTVLAQQYVRMKRTYGGKF 435
A+ KL P T+ L GG +G D + R++R Y
Sbjct: 364 HALE------KLTPYYQGIGPAWTKESVLPGGAIEG-DRDDYA------ARLRRRY---- 406
Query: 436 VPGVMDTAVAKHLSHAYGIMAEQVAIIAQNEGLGKRLAH--GYPFLEAEVAYCARNEYCE 493
+ ++A+H + YG +E ++ N G L G+ F EAE+ Y +E+
Sbjct: 407 --PFLTESLARHYARTYGSNSE---LLLGNAGTVSDLGEDFGHEFYEAELKYLVDHEWVR 461
Query: 494 SAVDFVARRCRLA-FLDTDAAGRALPRIIE 522
A D + RR + +L+ D R ++E
Sbjct: 462 RADDALWRRTKQGXWLNADQQSRVSQWLVE 491
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 32/53 (60%), Gaps = 7/53 (13%)
Query: 95 LRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERK 147
L V +E +D + TSS S+KLIHGG+RYLE F +LV AL ER+
Sbjct: 27 LSVLXLEAQDLACATSSASSKLIHGGLRYLEHYEF-------RLVSEALAERE 72
>pdb|2FJA|A Chain A, Adenosine 5'-Phosphosulfate Reductase In Complex With
Substrate
pdb|2FJA|C Chain C, Adenosine 5'-Phosphosulfate Reductase In Complex With
Substrate
pdb|2FJB|A Chain A, Adenosine-5'-Phosphosulfate Reductase Im Complex With
Products
pdb|2FJB|C Chain C, Adenosine-5'-Phosphosulfate Reductase Im Complex With
Products
pdb|2FJD|A Chain A, Adenosine-5-Phosphosulfate Reductase In Complex With
Sulfite (Covalent Adduct)
pdb|2FJD|C Chain C, Adenosine-5-Phosphosulfate Reductase In Complex With
Sulfite (Covalent Adduct)
pdb|2FJE|A Chain A, Adenosine-5-Phosphosulfate Reductase Oxidized State
pdb|2FJE|C Chain C, Adenosine-5-Phosphosulfate Reductase Oxidized State
Length = 643
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 24/34 (70%), Gaps = 4/34 (11%)
Query: 73 DILVIGGGATGCGVALDAATR----GLRVGLVER 102
DIL+IGGG +GCG A +AA GL+V LVE+
Sbjct: 24 DILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEK 57
>pdb|1JNR|A Chain A, Structure Of Adenylylsulfate Reductase From The
Hyperthermophilic Archaeoglobus Fulgidus At 1.6
Resolution
pdb|1JNR|C Chain C, Structure Of Adenylylsulfate Reductase From The
Hyperthermophilic Archaeoglobus Fulgidus At 1.6
Resolution
pdb|1JNZ|A Chain A, Structure Of Adenylylsulfate Reductase From The
Hyperthermophilic Archaeoglobus Fulgidus At 1.6
Resolution
pdb|1JNZ|C Chain C, Structure Of Adenylylsulfate Reductase From The
Hyperthermophilic Archaeoglobus Fulgidus At 1.6
Resolution
Length = 643
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 24/34 (70%), Gaps = 4/34 (11%)
Query: 73 DILVIGGGATGCGVALDAATR----GLRVGLVER 102
DIL+IGGG +GCG A +AA GL+V LVE+
Sbjct: 24 DILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEK 57
>pdb|3DME|A Chain A, Crystal Structure Of Conserved Exported Protein From
Bordetella Pertussis. Northeast Structural Genomics
Target Ber141
pdb|3DME|B Chain B, Crystal Structure Of Conserved Exported Protein From
Bordetella Pertussis. Northeast Structural Genomics
Target Ber141
Length = 369
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVER-EDFSSGTSSRSTKLIHGGVRY 123
S +D +VIG G G +A A G V + E E +GTSSR++++IH G+ Y
Sbjct: 2 STDIDCIVIGAGVVGLAIARALAAGGHEVLVAEAAEGIGTGTSSRNSEVIHAGIYY 57
>pdb|2EQ7|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdo
pdb|2EQ7|B Chain B, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdo
pdb|2YQU|A Chain A, Crystal Structures And Evolutionary Relationship Of Two
Different Lipoamide Dehydrogenase(e3s) From Thermus
Thermophilus
pdb|2YQU|B Chain B, Crystal Structures And Evolutionary Relationship Of Two
Different Lipoamide Dehydrogenase(e3s) From Thermus
Thermophilus
Length = 455
Score = 36.2 bits (82), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 25/40 (62%)
Query: 73 DILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSR 112
D+LVIG G G A+ AA G++VG+VE+E GT R
Sbjct: 3 DLLVIGAGPGGYVAAIRAAQLGMKVGVVEKEKALGGTCLR 42
>pdb|3E1T|A Chain A, Structure And Action Of The Myxobacterial Chondrochloren
Halogenase Cndh, A New Variant Of Fad-Dependent
Halogenases
Length = 512
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 22/34 (64%)
Query: 72 LDILVIGGGATGCGVALDAATRGLRVGLVEREDF 105
D++VIGGG G +A A RG RV L+ERE F
Sbjct: 8 FDLIVIGGGPGGSTLASFVAMRGHRVLLLEREAF 41
>pdb|1QO8|A Chain A, The Structure Of The Open Conformation Of A
Flavocytochrome C3 Fumarate Reductase
pdb|1QO8|D Chain D, The Structure Of The Open Conformation Of A
Flavocytochrome C3 Fumarate Reductase
Length = 566
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 25/47 (53%)
Query: 64 IAANNSNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTS 110
IAA S +LV+G G+ G +L A G V LV++ FS G S
Sbjct: 114 IAAGPSETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNS 160
>pdb|4E0V|A Chain A, Structure Of L-Amino Acid Oxidase From The B. Jararacussu
Venom
pdb|4E0V|B Chain B, Structure Of L-Amino Acid Oxidase From The B. Jararacussu
Venom
Length = 497
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 38/91 (41%), Gaps = 15/91 (16%)
Query: 22 ILLFTRPSIAGNDRGPSPDLVRSQINDSKAVVPSRVVQESALIAAN----NSNPLDILVI 77
+F++P +DR P + R +E IA N SNP ++++
Sbjct: 4 FFMFSKPGKLADDRNPLEECFRETD-----------YEEFLEIAKNGLSTTSNPKRVVIV 52
Query: 78 GGGATGCGVALDAATRGLRVGLVEREDFSSG 108
G G +G A A G +V ++E + + G
Sbjct: 53 GAGMSGLSAAYVLANAGHQVTVLEASERAGG 83
>pdb|3IHG|A Chain A, Crystal Structure Of A Ternary Complex Of Aklavinone-11
Hydroxylase With Fad And Aklavinone
pdb|3IHG|B Chain B, Crystal Structure Of A Ternary Complex Of Aklavinone-11
Hydroxylase With Fad And Aklavinone
pdb|3IHG|C Chain C, Crystal Structure Of A Ternary Complex Of Aklavinone-11
Hydroxylase With Fad And Aklavinone
Length = 535
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 68 NSNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDF------SSGTSSRSTKLIH-GG 120
N + +D+LV+G G G A+ A +G+RV +VER ++G + R+ +L+ GG
Sbjct: 2 NDHEVDVLVVGAGLGGLSTAMFLARQGVRVLVVERRPGLSPYPRAAGQNPRTMELLRIGG 61
Query: 121 V 121
V
Sbjct: 62 V 62
>pdb|1ZDL|A Chain A, Crystal Structure Of Mouse Thioredoxin Reductase Type 2
pdb|1ZKQ|A Chain A, Crystal Structure Of Mouse Thioredoxin Reductase Type 2
Length = 517
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 65 AANNSNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGG 120
AA D+LVIGGG+ G A +AA G +V + + + S R TK GG
Sbjct: 26 AAGGQQSFDLLVIGGGSGGLACAKEAAQLGKKVAVADYVE----PSPRGTKWGLGG 77
>pdb|3ATQ|A Chain A, Geranylgeranyl Reductase (Ggr) From Sulfolobus
Acidocaldarius
pdb|3ATR|A Chain A, Geranylgeranyl Reductase (Ggr) From Sulfolobus
Acidocaldarius Co- Crystallized With Its Ligand
Length = 453
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 73 DILVIGGGATGCGVALDAATRGLRVGLVEREDFS 106
D+L+IGGG G A + RGL++ LV+ + ++
Sbjct: 8 DVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPWN 41
>pdb|2NVK|X Chain X, Crystal Structure Of Thioredoxin Reductase From Drosophila
Melanogaster
Length = 488
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 67 NNSNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGG 120
S D++VIGGG+ G A +A G RV + DF T + TK GG
Sbjct: 5 QGSYDYDLIVIGGGSAGLACAKEAVLNGARVACL---DFVKPTPTLGTKWGVGG 55
>pdb|3DGH|A Chain A, Crystal Structure Of Drosophila Thioredoxin Reductase,
C-Terminal 8- Residue Truncation
pdb|3DGH|B Chain B, Crystal Structure Of Drosophila Thioredoxin Reductase,
C-Terminal 8- Residue Truncation
Length = 483
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 67 NNSNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGG 120
S D++VIGGG+ G A +A G RV + DF T + TK GG
Sbjct: 5 QGSYDYDLIVIGGGSAGLACAKEAVLNGARVACL---DFVKPTPTLGTKWGVGG 55
>pdb|3DH9|A Chain A, Crystal Structure Of Drosophila Thioredoxin Reductase,
Wild-Type
pdb|3DH9|B Chain B, Crystal Structure Of Drosophila Thioredoxin Reductase,
Wild-Type
Length = 482
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 67 NNSNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGG 120
S D++VIGGG+ G A +A G RV + DF T + TK GG
Sbjct: 1 QGSYDYDLIVIGGGSAGLACAKEAVLNGARVACL---DFVKPTPTLGTKWGVGG 51
>pdb|3VPJ|E Chain E, Crystal Structure Of Type Vi Effector Tse1 From
Pseudomonas Aeruginosa In Complex With Immune Protein
Tsi1
pdb|3VPJ|F Chain F, Crystal Structure Of Type Vi Effector Tse1 From
Pseudomonas Aeruginosa In Complex With Immune Protein
Tsi1
pdb|3VPJ|G Chain G, Crystal Structure Of Type Vi Effector Tse1 From
Pseudomonas Aeruginosa In Complex With Immune Protein
Tsi1
pdb|3VPJ|H Chain H, Crystal Structure Of Type Vi Effector Tse1 From
Pseudomonas Aeruginosa In Complex With Immune Protein
Tsi1
Length = 192
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 205 GARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRK 237
G R+ SG+ D+ AK+V + PFC + +K
Sbjct: 160 GLRLGQKCSGESVDSCAKIVKRSLAPFCQTAKK 192
>pdb|2R9Z|A Chain A, Glutathione Amide Reductase From Chromatium Gracile
pdb|2R9Z|B Chain B, Glutathione Amide Reductase From Chromatium Gracile
pdb|2RAB|A Chain A, Structure Of Glutathione Amide Reductase From Chromatium
Gracile In Complex With Nad
pdb|2RAB|B Chain B, Structure Of Glutathione Amide Reductase From Chromatium
Gracile In Complex With Nad
Length = 463
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 72 LDILVIGGGATGCGVALDAATRGLRVGLVE 101
D++ IGGG+ G VA AA G RV L+E
Sbjct: 5 FDLIAIGGGSGGLAVAEKAAAFGKRVALIE 34
>pdb|2VVM|A Chain A, The Structure Of Mao-N-D5, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVM|B Chain B, The Structure Of Mao-N-D5, A Variant Of Monoamine Oxidase
From Aspergillus Niger
Length = 495
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 20/43 (46%)
Query: 71 PLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRS 113
P D++VIGGG G D G + L+E D G S S
Sbjct: 39 PWDVIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIGGRSWSS 81
>pdb|2VVL|G Chain G, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger
Length = 495
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 21/47 (44%)
Query: 67 NNSNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRS 113
+ P D++VIGGG G D G + L+E D G S S
Sbjct: 35 DKDGPWDVIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIGGRSWSS 81
>pdb|2VVL|A Chain A, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVL|B Chain B, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVL|C Chain C, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVL|D Chain D, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVL|E Chain E, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVL|F Chain F, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVL|H Chain H, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger
Length = 495
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 21/47 (44%)
Query: 67 NNSNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRS 113
+ P D++VIGGG G D G + L+E D G S S
Sbjct: 35 DKDGPWDVIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIGGRSWSS 81
>pdb|3DGZ|A Chain A, Crystal Structure Of Mouse Mitochondrial Thioredoxin
Reductase, C- Terminal 3-Residue Truncation
Length = 488
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 66 ANNSNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGG 120
A D+LVIGGG+ G A +AA G +V + + + S R TK GG
Sbjct: 1 AGGQQSFDLLVIGGGSGGLACAKEAAQLGKKVAVADYVE----PSPRGTKWGLGG 51
>pdb|4EQA|C Chain C, Crystal Structure Of Pa1844 In Complex With Pa1845 From
Pseudomonas Aeruginosa Pao1
pdb|4EQA|D Chain D, Crystal Structure Of Pa1844 In Complex With Pa1845 From
Pseudomonas Aeruginosa Pao1
Length = 153
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 205 GARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRK 237
G R+ SG+ D+ AK+V + PFC + +K
Sbjct: 121 GLRLGQKCSGESVDSCAKIVKRSLAPFCQTAKK 153
>pdb|3HDQ|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|I Chain I, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|J Chain J, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDY|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|I Chain I, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|J Chain J, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HE3|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|I Chain I, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|J Chain J, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3MJ4|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|I Chain I, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|J Chain J, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
Length = 397
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 24/52 (46%)
Query: 51 AVVPSRVVQESALIAANNSNPLDILVIGGGATGCGVALDAATRGLRVGLVER 102
AV R Q + S D L++G G G +A A+ G RV +V+R
Sbjct: 9 AVTNERTEQTNTTNEQQESKGFDYLIVGAGFAGSVLAERLASSGQRVLIVDR 60
>pdb|4FGI|B Chain B, Structure Of The Effector - Immunity System Tse1 TSI1
FROM Pseudomonas Aeruginosa
pdb|4FGI|D Chain D, Structure Of The Effector - Immunity System Tse1 TSI1
FROM Pseudomonas Aeruginosa
pdb|4FGI|F Chain F, Structure Of The Effector - Immunity System Tse1 TSI1
FROM Pseudomonas Aeruginosa
pdb|4FGI|H Chain H, Structure Of The Effector - Immunity System Tse1 TSI1
FROM Pseudomonas Aeruginosa
Length = 151
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 205 GARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRK 237
G R+ SG+ D+ AK+V + PFC + +K
Sbjct: 119 GLRLGQKCSGESVDSCAKIVKRSLAPFCQTAKK 151
>pdb|3FKD|A Chain A, The Crystal Structure Of L-Threonine-O-3-Phosphate
Decarboxylase From Porphyromonas Gingivalis
pdb|3FKD|B Chain B, The Crystal Structure Of L-Threonine-O-3-Phosphate
Decarboxylase From Porphyromonas Gingivalis
pdb|3FKD|C Chain C, The Crystal Structure Of L-Threonine-O-3-Phosphate
Decarboxylase From Porphyromonas Gingivalis
pdb|3FKD|D Chain D, The Crystal Structure Of L-Threonine-O-3-Phosphate
Decarboxylase From Porphyromonas Gingivalis
Length = 350
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 54/154 (35%), Gaps = 26/154 (16%)
Query: 330 VLSAWSGIRPLAMDPSAKNTESISR--DHVVCEDFPGLVTITGGKWTTYRSMAEDAVNAA 387
+ A+ G R L PS E R +H VC + ED A
Sbjct: 83 IAQAFRGSRSLIAIPSFAEYEDACRXYEHEVC----------------FYPSNEDIGEAD 126
Query: 388 IKSGKL----NPSN--GCLTQNLRLVGGDGWDPSSFTVLAQQYVRM--KRTYGGKFVPGV 439
+ NP+N G L Q ++ P + VL Q YV + + G
Sbjct: 127 FSNXDFCWLCNPNNPDGRLLQRTEILRLLNDHPDTTFVLDQSYVSFTTEEVIRPADIKGR 186
Query: 440 MDTAVAKHLSHAYGIMAEQVAIIAQNEGLGKRLA 473
+ SHAYGI ++ I N+ KR+A
Sbjct: 187 KNLVXVYSFSHAYGIPGLRIGYIVANKDFXKRVA 220
>pdb|2R0C|A Chain A, Structure Of The Substrate-Free Form Of The Rebeccamycin
Biosynthetic Enzyme Rebc
pdb|2R0G|A Chain A, Chromopyrrolic Acid-Soaked Rebc With Bound 7-Carboxy-K252c
pdb|2R0G|B Chain B, Chromopyrrolic Acid-Soaked Rebc With Bound 7-Carboxy-K252c
pdb|2R0P|A Chain A, K252c-Soaked Rebc
pdb|3EPT|A Chain A, Structure Of The Rebeccamycin Biosynthetic Enzyme Rebc
With Reduced Flavin
pdb|3EPT|B Chain B, Structure Of The Rebeccamycin Biosynthetic Enzyme Rebc
With Reduced Flavin
Length = 549
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 73 DILVIGGGATGCGVALDAATRGLRVGLVERED 104
D+L++GGG G +ALD A R + +VE+ D
Sbjct: 28 DVLILGGGPVGMALALDLAHRQVGHLVVEQTD 59
>pdb|3NYE|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa D-Arginine
Dehydrogenase In Complex With Imino-Arginine
pdb|3NYF|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa D-Arginine
Dehydrogenase In Complex With Imino-Histidine
pdb|3NYC|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa D-Arginine
Dehydrogenase
pdb|3SM8|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa D-Arginine
Dehydrogenase In Complex With An (N5) Flavin Adduct
Length = 381
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 58/129 (44%), Gaps = 16/129 (12%)
Query: 221 AKVVVNAAGPFCDSVRKLADQNVQPM-ICPSSGVHIVLPDYYSPEGMG-----LIVPKTK 274
A V+VNAAG +CD++ LA V+P+ + P + + P G+ ++V +
Sbjct: 198 AAVLVNAAGAWCDAIAGLA--GVRPLGLQPKRRSAFI---FAPPPGIDCHDWPMLVSLDE 252
Query: 275 DGRVVFMLPWLGRTVAGTTDSDTVITLLPEPHEDEIQFILDAISDYLNVKVRRTDVLSAW 334
++ P G + ++D V +P + +I + I + + +RR + W
Sbjct: 253 S---FYLKPDAGMLLGSPANADPVEAHDVQPEQLDIATGMYLIEEATTLTIRRPE--HTW 307
Query: 335 SGIRPLAMD 343
+G+R D
Sbjct: 308 AGLRSFVAD 316
>pdb|1LSO|A Chain A, Crystal Structure Of The S137a Mutant Of L-3-Hydroxyacyl-
Coa Dehydrogenase In Complex With Nad
pdb|1LSO|B Chain B, Crystal Structure Of The S137a Mutant Of L-3-Hydroxyacyl-
Coa Dehydrogenase In Complex With Nad
Length = 302
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 74 ILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVF 129
+ VIGGG G G+A AA G V LV++ + ++S K I +R + K F
Sbjct: 18 VTVIGGGLMGAGIAQVAAATGHTVVLVDQ---TEDILAKSKKGIEESLRKVAKKKF 70
>pdb|1LSJ|A Chain A, Crystal Structure Of The E110q Mutant Of L-3-hydroxyacyl-
Coa Dehydrogenase In Complex With Nad
pdb|1LSJ|B Chain B, Crystal Structure Of The E110q Mutant Of L-3-hydroxyacyl-
Coa Dehydrogenase In Complex With Nad
Length = 302
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 74 ILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVF 129
+ VIGGG G G+A AA G V LV++ + ++S K I +R + K F
Sbjct: 18 VTVIGGGLMGAGIAQVAAATGHTVVLVDQ---TEDILAKSKKGIEESLRKVAKKKF 70
>pdb|1IL0|A Chain A, X-Ray Crystal Structure Of The E170q Mutant Of Human L-3-
Hydroxyacyl-Coa Dehydrogenase
pdb|1IL0|B Chain B, X-Ray Crystal Structure Of The E170q Mutant Of Human L-3-
Hydroxyacyl-Coa Dehydrogenase
Length = 302
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 74 ILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVF 129
+ VIGGG G G+A AA G V LV++ + ++S K I +R + K F
Sbjct: 18 VTVIGGGLMGAGIAQVAAATGHTVVLVDQ---TEDILAKSKKGIEESLRKVAKKKF 70
>pdb|1F0Y|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With
Acetoacetyl-Coa And Nad+
pdb|1F0Y|B Chain B, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With
Acetoacetyl-Coa And Nad+
Length = 302
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 74 ILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVF 129
+ VIGGG G G+A AA G V LV++ + ++S K I +R + K F
Sbjct: 18 VTVIGGGLMGAGIAQVAAATGHTVVLVDQ---TEDILAKSKKGIEESLRKVAKKKF 70
>pdb|1M75|A Chain A, Crystal Structure Of The N208s Mutant Of L-3-Hydroxyacyl-
Coa Dehydrogenase In Complex With Nad And
Acetoacetyl-Coa
pdb|1M75|B Chain B, Crystal Structure Of The N208s Mutant Of L-3-Hydroxyacyl-
Coa Dehydrogenase In Complex With Nad And
Acetoacetyl-Coa
Length = 302
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 74 ILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVF 129
+ VIGGG G G+A AA G V LV++ + ++S K I +R + K F
Sbjct: 18 VTVIGGGLMGAGIAQVAAATGHTVVLVDQ---TEDILAKSKKGIEESLRKVAKKKF 70
>pdb|1F12|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With 3-
Hydroxybutyryl-Coa
pdb|1F12|B Chain B, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With 3-
Hydroxybutyryl-Coa
pdb|1F14|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase (Apo)
pdb|1F14|B Chain B, L-3-Hydroxyacyl-Coa Dehydrogenase (Apo)
pdb|1F17|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With Nadh
pdb|1F17|B Chain B, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With Nadh
Length = 310
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 74 ILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVF 129
+ VIGGG G G+A AA G V LV++ + ++S K I +R + K F
Sbjct: 18 VTVIGGGLMGAGIAQVAAATGHTVVLVDQ---TEDILAKSKKGIEESLRKVAKKKF 70
>pdb|3HAD|A Chain A, Biochemical Characterization And Structure Determination
Of Human Heart Short Chain L-3-Hydroxyacyl Coa
Dehydrogenase Provide Insight Into Catalytic Mechanism
pdb|3HAD|B Chain B, Biochemical Characterization And Structure Determination
Of Human Heart Short Chain L-3-Hydroxyacyl Coa
Dehydrogenase Provide Insight Into Catalytic Mechanism
Length = 308
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 74 ILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVF 129
+ VIGGG G G+A AA G V LV++ + ++S K I +R + K F
Sbjct: 18 VTVIGGGLMGAGIAQVAAATGHTVVLVDQ---TEDILAKSKKGIEESLRKVAKKKF 70
>pdb|1M76|A Chain A, Crystal Structure Of The S137c Mutant Of L-3-Hydroxyacyl-
Coa Dehydrogenase In Complex With Nad And
Acetoacetyl-Coa
pdb|1M76|B Chain B, Crystal Structure Of The S137c Mutant Of L-3-Hydroxyacyl-
Coa Dehydrogenase In Complex With Nad And
Acetoacetyl-Coa
Length = 302
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 74 ILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVF 129
+ VIGGG G G+A AA G V LV++ + ++S K I +R + K F
Sbjct: 18 VTVIGGGLMGAGIAQVAAATGHTVVLVDQ---TEDILAKSKKGIEESLRKVAKKKF 70
>pdb|3HDH|A Chain A, Pig Heart Short Chain L-3-Hydroxyacyl Coa Dehydrogenase
Revisited: Sequence Analysis And Crystal Structure
Determination
pdb|3HDH|B Chain B, Pig Heart Short Chain L-3-Hydroxyacyl Coa Dehydrogenase
Revisited: Sequence Analysis And Crystal Structure
Determination
pdb|3HDH|C Chain C, Pig Heart Short Chain L-3-Hydroxyacyl Coa Dehydrogenase
Revisited: Sequence Analysis And Crystal Structure
Determination
Length = 302
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 74 ILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVF 129
+ VIGGG G G+A AA G V LV++ + ++S K I +R + K F
Sbjct: 18 VTVIGGGLMGAGIAQVAAATGHTVVLVDQ---TEDILAKSKKGIEESLRKVAKKKF 70
>pdb|3LAD|A Chain A, Refined Crystal Structure Of Lipoamide Dehydrogenase From
Azotobacter Vinelandii At 2.2 Angstroms Resolution. A
Comparison With The Structure Of Glutathione Reductase
pdb|3LAD|B Chain B, Refined Crystal Structure Of Lipoamide Dehydrogenase From
Azotobacter Vinelandii At 2.2 Angstroms Resolution. A
Comparison With The Structure Of Glutathione Reductase
Length = 476
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSS 111
S D++VIG G G A+ +A GL+ L+E+ G ++
Sbjct: 1 SQKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKTA 43
>pdb|2OLN|A Chain A, Nikd, An Unusual Amino Acid Oxidase Essential For
Nikkomycin Biosynthesis: Closed Form At 1.15 A
Resolution
pdb|2OLO|A Chain A, Nikd, An Unusual Amino Acid Oxidase Essential For
Nikkomycin Biosynthesis: Open Form At 1.9a Resolution
Length = 397
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 86 VALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEE 145
A A RG RV ++ER F + S H ++Y ++ +F L L L + ALE
Sbjct: 19 TAWQVAERGHRVLVLERHTFFNENGGTSGAERHWRLQYTQEDLFRLTLETLPL-WRALES 77
Query: 146 RKQAK 150
R + +
Sbjct: 78 RCERR 82
>pdb|2Q6U|A Chain A, Semet-Substituted Form Of Nikd
Length = 384
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 86 VALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEE 145
A A RG RV ++ER F + S H ++Y ++ +F L L L + ALE
Sbjct: 17 TAWQVAERGHRVLVLERHTFFNENGGTSGAERHWRLQYTQEDLFRLTLETLPL-WRALES 75
Query: 146 RKQAK 150
R + +
Sbjct: 76 RCERR 80
>pdb|3HZL|A Chain A, Tyr258phe Mutant Of Nikd, An Unusual Amino Acid Oxidase
Essential For Nikkomycin Biosynthesis: Open Form At
1.55a Resolution
Length = 397
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 86 VALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEE 145
A A RG RV ++ER F + S H ++Y ++ +F L L L + ALE
Sbjct: 19 TAWQVAERGHRVLVLERHTFFNENGGTSGAERHWRLQYTQEDLFRLTLETLPL-WRALES 77
Query: 146 RKQAK 150
R + +
Sbjct: 78 RCERR 82
>pdb|3BHF|A Chain A, Crystal Structure Of R49k Mutant Of Monomeric Sarcosine
Oxidase Crystallized In Peg As Precipitant
pdb|3BHF|B Chain B, Crystal Structure Of R49k Mutant Of Monomeric Sarcosine
Oxidase Crystallized In Peg As Precipitant
pdb|3BHK|A Chain A, Crystal Structure Of R49k Mutant Of Monomeric Sarcosine
Oxidase Crystallized In Phosphate As Precipitant
pdb|3BHK|B Chain B, Crystal Structure Of R49k Mutant Of Monomeric Sarcosine
Oxidase Crystallized In Phosphate As Precipitant
Length = 390
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVERED--FSSGTSSRSTKLI 117
S D++V+G G+ G A +G++ LV+ D ++G+ TK+I
Sbjct: 2 STHFDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPHTNGSHHGDTKII 52
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,998,784
Number of Sequences: 62578
Number of extensions: 653579
Number of successful extensions: 1898
Number of sequences better than 100.0: 110
Number of HSP's better than 100.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 1778
Number of HSP's gapped (non-prelim): 126
length of query: 563
length of database: 14,973,337
effective HSP length: 104
effective length of query: 459
effective length of database: 8,465,225
effective search space: 3885538275
effective search space used: 3885538275
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)