Query 008503
Match_columns 563
No_of_seqs 491 out of 4416
Neff 8.8
Searched_HMMs 46136
Date Thu Mar 28 12:59:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008503.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008503hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02464 glycerol-3-phosphate 100.0 6.8E-77 1.5E-81 651.3 57.3 515 48-563 48-627 (627)
2 KOG0042 Glycerol-3-phosphate d 100.0 2E-78 4.3E-83 607.5 40.0 482 53-552 52-648 (680)
3 COG0578 GlpA Glycerol-3-phosph 100.0 6.5E-69 1.4E-73 558.4 47.5 453 69-549 10-530 (532)
4 PRK11101 glpA sn-glycerol-3-ph 100.0 9.5E-62 2.1E-66 526.5 48.9 443 69-544 4-501 (546)
5 PRK12266 glpD glycerol-3-phosp 100.0 4E-59 8.7E-64 502.3 47.7 440 70-532 5-504 (508)
6 PRK13369 glycerol-3-phosphate 100.0 2.6E-57 5.6E-62 488.8 46.3 423 69-512 4-486 (502)
7 TIGR03377 glycerol3P_GlpA glyc 100.0 8.6E-57 1.9E-61 487.1 45.2 427 87-543 1-478 (516)
8 PRK11728 hydroxyglutarate oxid 100.0 6.5E-29 1.4E-33 261.0 28.6 299 71-386 2-392 (393)
9 COG0579 Predicted dehydrogenas 100.0 2.6E-28 5.5E-33 250.4 23.0 309 70-390 2-375 (429)
10 PF01266 DAO: FAD dependent ox 100.0 5.4E-28 1.2E-32 250.2 20.8 292 73-386 1-358 (358)
11 PRK12409 D-amino acid dehydrog 100.0 4.5E-26 9.7E-31 241.0 29.5 300 72-390 2-406 (410)
12 PRK00711 D-amino acid dehydrog 100.0 3.6E-26 7.8E-31 242.3 28.3 292 73-390 2-402 (416)
13 TIGR01373 soxB sarcosine oxida 99.9 1.9E-25 4.1E-30 236.0 28.4 296 69-389 28-384 (407)
14 PRK11259 solA N-methyltryptoph 99.9 1.1E-24 2.4E-29 227.8 30.7 295 70-390 2-360 (376)
15 PRK01747 mnmC bifunctional tRN 99.9 4.1E-25 8.9E-30 246.4 26.1 288 71-389 260-632 (662)
16 TIGR01377 soxA_mon sarcosine o 99.9 8.2E-24 1.8E-28 221.5 29.8 295 72-390 1-360 (380)
17 TIGR03329 Phn_aa_oxid putative 99.9 7.3E-24 1.6E-28 226.8 28.9 292 69-389 22-393 (460)
18 KOG2665 Predicted FAD-dependen 99.9 7.9E-25 1.7E-29 208.0 14.9 310 69-388 46-452 (453)
19 TIGR03364 HpnW_proposed FAD de 99.9 1.2E-23 2.6E-28 219.0 24.5 282 72-381 1-364 (365)
20 COG0665 DadA Glycine/D-amino a 99.9 6.5E-23 1.4E-27 215.2 26.9 298 69-390 2-367 (387)
21 TIGR01320 mal_quin_oxido malat 99.9 3.4E-22 7.4E-27 213.5 28.0 312 72-388 1-443 (483)
22 PRK05257 malate:quinone oxidor 99.9 1.4E-21 3E-26 208.9 27.7 317 69-389 3-449 (494)
23 TIGR02352 thiamin_ThiO glycine 99.9 1.9E-21 4E-26 200.1 23.1 272 88-389 1-335 (337)
24 PTZ00383 malate:quinone oxidor 99.9 5.6E-21 1.2E-25 203.5 24.5 308 69-393 43-477 (497)
25 PRK13339 malate:quinone oxidor 99.9 1.2E-20 2.6E-25 200.2 26.4 314 69-389 4-451 (497)
26 TIGR03197 MnmC_Cterm tRNA U-34 99.9 7.7E-21 1.7E-25 199.0 21.4 273 86-389 1-361 (381)
27 KOG2853 Possible oxidoreductas 99.8 2.3E-19 4.9E-24 172.6 22.7 301 70-389 85-481 (509)
28 KOG2844 Dimethylglycine dehydr 99.8 1.5E-19 3.3E-24 187.3 20.6 297 70-390 38-401 (856)
29 KOG2820 FAD-dependent oxidored 99.8 2.4E-17 5.2E-22 159.2 24.5 305 69-391 5-379 (399)
30 TIGR01372 soxA sarcosine oxida 99.8 8.5E-19 1.9E-23 202.6 17.0 59 475-536 510-568 (985)
31 KOG2852 Possible oxidoreductas 99.8 2.6E-17 5.7E-22 155.3 16.6 296 71-389 10-362 (380)
32 KOG3923 D-aspartate oxidase [A 99.7 1.2E-16 2.5E-21 152.0 16.4 279 71-392 3-338 (342)
33 PRK06481 fumarate reductase fl 99.7 2E-15 4.3E-20 163.3 22.1 163 69-234 59-253 (506)
34 COG0644 FixC Dehydrogenases (f 99.6 5.4E-14 1.2E-18 147.8 24.5 295 70-390 2-306 (396)
35 PRK06185 hypothetical protein; 99.6 6.9E-14 1.5E-18 147.8 25.4 233 68-321 3-252 (407)
36 PLN02697 lycopene epsilon cycl 99.6 1.2E-13 2.6E-18 148.2 27.0 286 69-390 106-409 (529)
37 TIGR02032 GG-red-SF geranylger 99.6 1.7E-13 3.7E-18 137.9 23.0 282 72-385 1-293 (295)
38 PRK04176 ribulose-1,5-biphosph 99.6 6.3E-14 1.4E-18 137.7 18.4 151 68-238 22-179 (257)
39 PF06039 Mqo: Malate:quinone o 99.6 3.9E-13 8.5E-18 137.0 24.5 189 70-260 2-274 (488)
40 PLN00093 geranylgeranyl diphos 99.5 2.7E-12 6E-17 136.4 27.6 290 68-390 36-346 (450)
41 TIGR02023 BchP-ChlP geranylger 99.5 9.7E-12 2.1E-16 130.5 27.4 287 72-390 1-301 (388)
42 TIGR01790 carotene-cycl lycope 99.5 7.5E-12 1.6E-16 131.5 26.5 284 73-390 1-299 (388)
43 TIGR01813 flavo_cyto_c flavocy 99.5 6.5E-13 1.4E-17 141.8 18.5 159 73-234 1-194 (439)
44 PRK07121 hypothetical protein; 99.5 5.6E-13 1.2E-17 144.2 18.1 162 69-233 18-240 (492)
45 TIGR02028 ChlP geranylgeranyl 99.5 1.3E-11 2.9E-16 129.7 27.4 290 72-390 1-307 (398)
46 PF05834 Lycopene_cycl: Lycope 99.5 7E-12 1.5E-16 130.7 24.9 273 73-389 1-290 (374)
47 PLN02463 lycopene beta cyclase 99.5 1.1E-11 2.4E-16 131.2 26.6 283 69-390 26-331 (447)
48 PRK08773 2-octaprenyl-3-methyl 99.5 3.5E-12 7.6E-17 134.2 21.5 171 69-258 4-194 (392)
49 PRK10015 oxidoreductase; Provi 99.5 8.6E-12 1.9E-16 132.2 24.4 158 69-241 3-172 (429)
50 TIGR00292 thiazole biosynthesi 99.5 2.7E-12 6E-17 125.7 18.8 149 68-234 18-172 (254)
51 PRK06452 sdhA succinate dehydr 99.5 1.4E-12 3E-17 142.8 18.6 164 67-232 1-198 (566)
52 PF00890 FAD_binding_2: FAD bi 99.5 1.4E-12 2.9E-17 138.5 17.7 159 73-233 1-204 (417)
53 PRK08274 tricarballylate dehyd 99.5 2.4E-12 5.2E-17 138.5 18.9 161 70-233 3-193 (466)
54 PRK07057 sdhA succinate dehydr 99.5 1.5E-12 3.3E-17 143.1 17.5 167 67-234 8-213 (591)
55 PRK06126 hypothetical protein; 99.4 1.3E-11 2.8E-16 135.5 24.4 162 66-242 2-197 (545)
56 PRK09078 sdhA succinate dehydr 99.4 2.7E-12 5.8E-17 141.4 18.8 165 69-234 10-214 (598)
57 PRK08244 hypothetical protein; 99.4 1.2E-11 2.7E-16 133.9 23.6 155 71-242 2-168 (493)
58 PRK08958 sdhA succinate dehydr 99.4 1.5E-12 3.2E-17 142.9 16.2 165 69-234 5-208 (588)
59 PRK10157 putative oxidoreducta 99.4 1.8E-11 3.9E-16 129.9 23.9 160 69-242 3-173 (428)
60 PTZ00139 Succinate dehydrogena 99.4 3.2E-12 6.9E-17 141.1 18.5 165 69-234 27-231 (617)
61 PRK06184 hypothetical protein; 99.4 1.2E-11 2.6E-16 134.3 22.5 156 71-243 3-178 (502)
62 PF01494 FAD_binding_3: FAD bi 99.4 2.2E-12 4.8E-17 133.2 15.5 157 71-242 1-181 (356)
63 COG1635 THI4 Ribulose 1,5-bisp 99.4 7.3E-12 1.6E-16 114.7 16.6 145 69-235 28-181 (262)
64 PLN00128 Succinate dehydrogena 99.4 5E-12 1.1E-16 139.5 18.4 165 69-234 48-252 (635)
65 PRK07573 sdhA succinate dehydr 99.4 1.5E-12 3.2E-17 144.2 14.0 165 68-234 32-234 (640)
66 PF01946 Thi4: Thi4 family; PD 99.4 5.5E-12 1.2E-16 116.5 14.2 143 69-233 15-166 (230)
67 PRK08020 ubiF 2-octaprenyl-3-m 99.4 1.8E-11 3.8E-16 128.8 20.2 156 68-242 2-178 (391)
68 PRK07803 sdhA succinate dehydr 99.4 8.9E-12 1.9E-16 137.9 18.5 165 68-234 5-215 (626)
69 PLN02815 L-aspartate oxidase 99.4 7.9E-12 1.7E-16 136.8 17.5 164 69-233 27-223 (594)
70 PRK08626 fumarate reductase fl 99.4 3E-12 6.5E-17 142.0 14.0 166 67-234 1-222 (657)
71 PRK11445 putative oxidoreducta 99.4 2.8E-10 6E-15 117.8 27.8 294 72-390 2-301 (351)
72 PRK07804 L-aspartate oxidase; 99.4 1.3E-11 2.8E-16 134.6 18.6 164 69-233 14-211 (541)
73 PRK07333 2-octaprenyl-6-methox 99.4 1.2E-11 2.7E-16 130.5 18.0 153 71-242 1-176 (403)
74 PRK07608 ubiquinone biosynthes 99.4 1.5E-11 3.4E-16 129.1 18.3 153 70-243 4-177 (388)
75 PRK06834 hypothetical protein; 99.4 5.4E-11 1.2E-15 128.1 22.7 156 70-244 2-167 (488)
76 COG0654 UbiH 2-polyprenyl-6-me 99.4 2.5E-11 5.4E-16 127.3 19.6 152 71-240 2-169 (387)
77 PRK06069 sdhA succinate dehydr 99.4 1.2E-11 2.6E-16 136.1 17.8 165 67-233 1-201 (577)
78 PRK08641 sdhA succinate dehydr 99.4 1.7E-11 3.6E-16 134.9 18.9 162 71-233 3-201 (589)
79 PRK12839 hypothetical protein; 99.4 1.5E-11 3.3E-16 134.5 17.6 68 166-236 212-280 (572)
80 PRK06263 sdhA succinate dehydr 99.4 2.1E-11 4.5E-16 133.3 18.4 163 69-233 5-198 (543)
81 PRK08013 oxidoreductase; Provi 99.4 1.9E-11 4.2E-16 128.8 17.6 153 71-242 3-177 (400)
82 PRK07364 2-octaprenyl-6-methox 99.4 3.5E-11 7.6E-16 127.6 19.6 158 69-242 16-190 (415)
83 TIGR01988 Ubi-OHases Ubiquinon 99.4 5.5E-11 1.2E-15 124.7 20.9 151 73-242 1-172 (385)
84 PRK12835 3-ketosteroid-delta-1 99.4 1.6E-11 3.5E-16 134.8 17.1 61 171-234 216-277 (584)
85 PRK07494 2-octaprenyl-6-methox 99.4 2.4E-11 5.2E-16 127.6 17.9 155 67-242 3-176 (388)
86 TIGR01812 sdhA_frdA_Gneg succi 99.4 2.8E-11 6.1E-16 133.2 19.0 159 73-233 1-192 (566)
87 PRK06175 L-aspartate oxidase; 99.3 1.7E-11 3.6E-16 130.2 16.3 159 70-233 3-190 (433)
88 PRK06134 putative FAD-binding 99.3 2.7E-11 5.8E-16 133.3 18.2 68 166-237 215-283 (581)
89 PTZ00306 NADH-dependent fumara 99.3 1.7E-11 3.6E-16 144.3 17.5 171 61-234 402-622 (1167)
90 PRK07045 putative monooxygenas 99.3 2.2E-10 4.7E-15 120.4 24.1 157 68-241 2-174 (388)
91 PRK06854 adenylylsulfate reduc 99.3 1.5E-11 3.2E-16 135.7 15.8 163 69-234 9-197 (608)
92 PRK05945 sdhA succinate dehydr 99.3 2.5E-11 5.5E-16 133.4 17.6 163 70-234 2-199 (575)
93 PRK06183 mhpA 3-(3-hydroxyphen 99.3 8.6E-11 1.9E-15 128.6 21.5 157 70-242 9-183 (538)
94 TIGR01984 UbiH 2-polyprenyl-6- 99.3 6.7E-11 1.4E-15 124.0 19.8 151 73-242 1-171 (382)
95 PRK08275 putative oxidoreducta 99.3 1.6E-11 3.5E-16 134.4 15.6 164 69-233 7-201 (554)
96 PRK08294 phenol 2-monooxygenas 99.3 1.8E-10 3.9E-15 127.7 23.8 162 70-243 31-220 (634)
97 PRK07190 hypothetical protein; 99.3 8.2E-11 1.8E-15 126.6 20.6 157 67-243 1-175 (487)
98 PLN02985 squalene monooxygenas 99.3 8.4E-11 1.8E-15 127.0 20.7 164 69-242 41-217 (514)
99 PRK05714 2-octaprenyl-3-methyl 99.3 4.5E-11 9.8E-16 126.3 18.2 152 71-242 2-177 (405)
100 PRK08205 sdhA succinate dehydr 99.3 4.2E-11 9E-16 131.8 17.8 164 70-234 4-208 (583)
101 PRK09231 fumarate reductase fl 99.3 2.6E-11 5.6E-16 133.2 16.1 164 69-234 2-198 (582)
102 PRK12845 3-ketosteroid-delta-1 99.3 5.5E-11 1.2E-15 129.8 18.5 61 170-234 219-280 (564)
103 PRK07395 L-aspartate oxidase; 99.3 2.7E-11 5.9E-16 132.0 15.8 162 69-233 7-198 (553)
104 PF03486 HI0933_like: HI0933-l 99.3 1.8E-11 4E-16 127.6 13.8 148 72-232 1-166 (409)
105 TIGR01989 COQ6 Ubiquinone bios 99.3 1.2E-10 2.6E-15 124.1 20.3 156 72-244 1-194 (437)
106 PRK12834 putative FAD-binding 99.3 3.1E-11 6.6E-16 132.2 16.0 164 69-234 2-229 (549)
107 PRK08071 L-aspartate oxidase; 99.3 4.9E-11 1.1E-15 129.1 17.4 158 71-233 3-191 (510)
108 TIGR01176 fum_red_Fp fumarate 99.3 7.1E-11 1.5E-15 129.5 18.6 163 70-234 2-197 (580)
109 TIGR00551 nadB L-aspartate oxi 99.3 6.5E-11 1.4E-15 127.8 18.0 159 71-234 2-191 (488)
110 PRK12842 putative succinate de 99.3 7.5E-11 1.6E-15 129.7 18.2 64 169-236 215-279 (574)
111 PRK06847 hypothetical protein; 99.3 4.5E-10 9.8E-15 117.4 23.3 151 71-240 4-171 (375)
112 PRK12837 3-ketosteroid-delta-1 99.3 5E-11 1.1E-15 129.3 16.5 62 169-234 174-237 (513)
113 PRK07843 3-ketosteroid-delta-1 99.3 6.6E-11 1.4E-15 129.5 17.1 60 170-233 210-270 (557)
114 PF12831 FAD_oxidored: FAD dep 99.3 3.6E-12 7.7E-17 135.2 6.6 156 73-242 1-158 (428)
115 KOG1298 Squalene monooxygenase 99.3 1.8E-10 4E-15 113.6 17.5 160 69-242 43-218 (509)
116 PRK09077 L-aspartate oxidase; 99.3 1.2E-10 2.6E-15 127.0 18.2 165 69-234 6-209 (536)
117 PRK08132 FAD-dependent oxidore 99.3 4.6E-10 1E-14 123.2 23.0 158 69-243 21-195 (547)
118 PRK06617 2-octaprenyl-6-methox 99.3 2.3E-10 4.9E-15 119.6 19.2 151 72-242 2-169 (374)
119 COG2081 Predicted flavoprotein 99.3 8.2E-11 1.8E-15 117.9 14.6 143 70-232 2-167 (408)
120 PRK12844 3-ketosteroid-delta-1 99.3 8.1E-11 1.8E-15 128.7 15.9 62 169-234 209-271 (557)
121 PRK08243 4-hydroxybenzoate 3-m 99.3 1.5E-09 3.3E-14 114.1 24.8 156 71-241 2-171 (392)
122 PRK06996 hypothetical protein; 99.3 1.3E-10 2.9E-15 122.4 16.9 164 67-242 7-184 (398)
123 PLN02661 Putative thiazole syn 99.3 1.8E-10 3.9E-15 116.0 16.5 145 68-232 89-244 (357)
124 PRK09126 hypothetical protein; 99.2 1.4E-10 3E-15 122.0 16.5 153 71-242 3-176 (392)
125 PRK07512 L-aspartate oxidase; 99.2 1E-10 2.2E-15 126.8 15.8 160 68-233 6-198 (513)
126 TIGR02061 aprA adenosine phosp 99.2 2.4E-10 5.2E-15 125.2 18.7 160 73-234 1-193 (614)
127 PRK07588 hypothetical protein; 99.2 6.3E-10 1.4E-14 117.0 20.9 144 72-235 1-161 (391)
128 TIGR01811 sdhA_Bsu succinate d 99.2 1.6E-10 3.6E-15 127.2 17.0 160 74-234 1-198 (603)
129 PRK08163 salicylate hydroxylas 99.2 2.4E-10 5.2E-15 120.4 17.6 152 70-240 3-174 (396)
130 PRK05732 2-octaprenyl-6-methox 99.2 2.8E-10 6E-15 119.9 18.0 154 70-242 2-178 (395)
131 PRK07538 hypothetical protein; 99.2 4E-10 8.6E-15 119.4 19.1 154 72-240 1-172 (413)
132 PRK08850 2-octaprenyl-6-methox 99.2 3E-10 6.6E-15 120.0 18.0 152 71-242 4-177 (405)
133 TIGR01789 lycopene_cycl lycope 99.2 1.2E-09 2.5E-14 113.6 21.6 228 73-343 1-240 (370)
134 PRK12843 putative FAD-binding 99.2 2.6E-10 5.7E-15 125.4 16.8 64 167-234 220-284 (578)
135 PRK05192 tRNA uridine 5-carbox 99.2 2.3E-10 5E-15 123.2 15.6 151 70-234 3-159 (618)
136 PRK08849 2-octaprenyl-3-methyl 99.2 8.6E-10 1.9E-14 115.7 18.7 153 71-242 3-176 (384)
137 COG1053 SdhA Succinate dehydro 99.2 3.2E-10 6.9E-15 122.6 14.3 163 69-232 4-202 (562)
138 PRK08401 L-aspartate oxidase; 99.1 4.6E-10 1E-14 120.4 14.2 154 72-235 2-178 (466)
139 PRK06753 hypothetical protein; 99.1 4.1E-09 9E-14 110.1 20.5 147 73-241 2-160 (373)
140 PRK13800 putative oxidoreducta 99.1 6.9E-10 1.5E-14 128.0 15.5 164 69-234 11-207 (897)
141 PRK05868 hypothetical protein; 99.1 7.4E-09 1.6E-13 108.0 21.1 149 72-240 2-168 (372)
142 TIGR02360 pbenz_hydroxyl 4-hyd 99.1 1E-09 2.2E-14 115.3 14.4 156 71-241 2-171 (390)
143 PF00732 GMC_oxred_N: GMC oxid 99.1 2.2E-09 4.8E-14 108.4 16.0 70 172-241 196-268 (296)
144 PF01134 GIDA: Glucose inhibit 99.1 1.3E-09 2.9E-14 111.5 13.4 148 73-233 1-153 (392)
145 PTZ00367 squalene epoxidase; P 99.1 5.7E-09 1.2E-13 113.6 18.7 158 70-241 32-227 (567)
146 TIGR02485 CobZ_N-term precorri 99.1 1.8E-09 4E-14 114.9 14.3 155 76-234 1-185 (432)
147 PF04820 Trp_halogenase: Trypt 99.0 5.2E-09 1.1E-13 111.5 17.0 70 161-237 147-216 (454)
148 TIGR00136 gidA glucose-inhibit 99.0 3.9E-09 8.4E-14 113.6 15.0 147 72-232 1-154 (617)
149 TIGR02730 carot_isom carotene 99.0 4.1E-09 8.9E-14 114.2 14.9 59 168-233 229-287 (493)
150 TIGR03378 glycerol3P_GlpB glyc 99.0 6.9E-09 1.5E-13 107.5 15.6 66 168-238 263-329 (419)
151 PRK13977 myosin-cross-reactive 99.0 1.2E-08 2.6E-13 109.1 17.2 67 168-234 226-295 (576)
152 PF13738 Pyr_redox_3: Pyridine 99.0 5.9E-09 1.3E-13 99.0 13.5 135 75-233 1-139 (203)
153 PRK06475 salicylate hydroxylas 99.0 4.4E-09 9.5E-14 111.0 13.4 153 72-241 3-175 (400)
154 PLN02172 flavin-containing mon 99.0 9.9E-09 2.1E-13 109.4 15.2 148 70-232 9-173 (461)
155 PRK07236 hypothetical protein; 99.0 1.9E-08 4E-13 105.7 16.6 155 69-237 4-159 (386)
156 TIGR01292 TRX_reduct thioredox 98.9 2E-08 4.4E-13 101.3 14.2 112 72-232 1-112 (300)
157 KOG2404 Fumarate reductase, fl 98.9 1.8E-08 3.9E-13 97.4 12.3 157 73-232 11-206 (477)
158 COG1233 Phytoene dehydrogenase 98.9 1.5E-08 3.3E-13 109.1 13.1 56 168-230 224-279 (487)
159 TIGR01810 betA choline dehydro 98.9 2.9E-08 6.3E-13 108.5 15.3 68 172-242 197-266 (532)
160 PLN02927 antheraxanthin epoxid 98.9 3.6E-08 7.9E-13 108.1 15.7 155 69-242 79-258 (668)
161 TIGR00275 flavoprotein, HI0933 98.9 4.3E-08 9.2E-13 103.2 15.7 147 75-232 1-160 (400)
162 COG0492 TrxB Thioredoxin reduc 98.9 1.5E-08 3.2E-13 101.6 11.5 116 70-235 2-118 (305)
163 PRK14989 nitrite reductase sub 98.9 6.4E-07 1.4E-11 102.2 25.6 101 72-233 146-246 (847)
164 KOG1335 Dihydrolipoamide dehyd 98.9 7.3E-08 1.6E-12 95.5 15.4 62 167-230 251-312 (506)
165 TIGR03143 AhpF_homolog putativ 98.8 3.5E-08 7.7E-13 108.2 13.6 113 70-233 3-115 (555)
166 PLN02612 phytoene desaturase 98.8 1.7E-06 3.7E-11 95.1 26.1 58 168-231 308-365 (567)
167 PRK02106 choline dehydrogenase 98.8 1.3E-07 2.8E-12 104.1 17.4 60 180-242 213-273 (560)
168 COG2072 TrkA Predicted flavopr 98.8 5.6E-08 1.2E-12 103.2 13.3 135 69-233 6-145 (443)
169 PRK15317 alkyl hydroperoxide r 98.8 1.1E-07 2.5E-12 103.5 15.3 114 69-232 209-322 (517)
170 TIGR02731 phytoene_desat phyto 98.7 2.1E-07 4.6E-12 99.8 16.5 65 167-232 212-276 (453)
171 TIGR03219 salicylate_mono sali 98.7 1.7E-07 3.8E-12 99.3 15.3 149 73-235 2-162 (414)
172 PRK05249 soluble pyridine nucl 98.7 1.8E-07 3.9E-12 100.6 15.2 41 69-109 3-43 (461)
173 TIGR02734 crtI_fam phytoene de 98.7 9.5E-08 2.1E-12 103.9 13.2 57 168-231 219-275 (502)
174 PRK05329 anaerobic glycerol-3- 98.7 3E-07 6.6E-12 96.5 16.3 61 168-233 259-319 (422)
175 KOG2415 Electron transfer flav 98.7 3.9E-08 8.4E-13 98.2 8.9 159 69-232 74-256 (621)
176 COG3573 Predicted oxidoreducta 98.7 1.3E-07 2.8E-12 92.0 12.1 36 69-104 3-38 (552)
177 COG0029 NadB Aspartate oxidase 98.7 1.8E-07 3.9E-12 96.4 13.7 159 73-235 9-199 (518)
178 TIGR02462 pyranose_ox pyranose 98.7 1E-07 2.3E-12 102.6 12.3 52 180-231 226-278 (544)
179 COG3075 GlpB Anaerobic glycero 98.7 2.3E-07 5E-12 90.3 13.1 59 169-232 259-317 (421)
180 PRK07208 hypothetical protein; 98.7 4.3E-07 9.4E-12 98.2 17.0 62 168-231 218-279 (479)
181 TIGR02374 nitri_red_nirB nitri 98.7 1.8E-06 4E-11 98.3 22.4 98 72-232 141-238 (785)
182 TIGR03140 AhpF alkyl hydropero 98.7 3.2E-07 6.9E-12 99.8 15.5 114 69-232 210-323 (515)
183 PRK07251 pyridine nucleotide-d 98.7 2.4E-07 5.2E-12 99.0 14.3 47 71-117 3-49 (438)
184 PLN02785 Protein HOTHEAD 98.7 2.9E-07 6.3E-12 101.0 15.0 67 175-242 227-301 (587)
185 KOG1399 Flavin-containing mono 98.7 2.6E-07 5.6E-12 97.1 13.9 143 70-232 5-153 (448)
186 TIGR02733 desat_CrtD C-3',4' d 98.7 3.2E-07 6.9E-12 99.5 15.2 62 168-231 232-293 (492)
187 PRK14694 putative mercuric red 98.7 3.3E-07 7.1E-12 98.7 15.0 50 67-118 2-51 (468)
188 KOG2614 Kynurenine 3-monooxyge 98.7 9.9E-07 2.1E-11 89.2 17.0 33 72-104 3-35 (420)
189 PRK06467 dihydrolipoamide dehy 98.7 3.2E-07 6.9E-12 98.7 14.7 47 70-117 3-49 (471)
190 PRK06416 dihydrolipoamide dehy 98.7 3.3E-07 7.1E-12 98.6 14.7 35 70-104 3-37 (462)
191 PTZ00363 rab-GDP dissociation 98.7 2.6E-06 5.5E-11 90.2 20.8 60 168-233 232-291 (443)
192 TIGR01424 gluta_reduc_2 glutat 98.6 2.4E-07 5.2E-12 99.1 13.1 47 71-119 2-48 (446)
193 PF00743 FMO-like: Flavin-bind 98.6 3.1E-07 6.7E-12 99.4 13.7 143 73-233 3-151 (531)
194 PRK10262 thioredoxin reductase 98.6 3E-07 6.6E-12 93.9 13.0 114 69-232 4-117 (321)
195 PRK08010 pyridine nucleotide-d 98.6 4E-07 8.6E-12 97.4 14.2 47 71-117 3-49 (441)
196 TIGR01421 gluta_reduc_1 glutat 98.6 3.5E-07 7.5E-12 97.9 13.4 47 70-118 1-47 (450)
197 PRK05976 dihydrolipoamide dehy 98.6 7.3E-07 1.6E-11 96.1 15.9 46 70-117 3-48 (472)
198 PRK06370 mercuric reductase; V 98.6 1.1E-06 2.4E-11 94.5 17.1 39 69-107 3-41 (463)
199 PLN02487 zeta-carotene desatur 98.6 3.2E-05 7E-10 84.4 28.0 62 169-232 296-360 (569)
200 KOG4254 Phytoene desaturase [C 98.6 3.7E-07 8E-12 92.4 11.9 59 168-233 264-322 (561)
201 PRK06115 dihydrolipoamide dehy 98.6 7.4E-07 1.6E-11 95.8 14.5 47 71-118 3-49 (466)
202 PRK13748 putative mercuric red 98.6 8.5E-07 1.9E-11 97.9 15.2 47 70-118 97-143 (561)
203 PRK07233 hypothetical protein; 98.6 1E-06 2.2E-11 93.9 15.3 56 168-231 198-253 (434)
204 COG0445 GidA Flavin-dependent 98.6 1.4E-07 3.1E-12 97.9 8.0 150 70-233 3-159 (621)
205 PF00070 Pyr_redox: Pyridine n 98.6 9.6E-07 2.1E-11 70.4 11.1 77 74-209 2-78 (80)
206 PRK05675 sdhA succinate dehydr 98.6 9.8E-07 2.1E-11 97.0 14.8 66 168-234 126-191 (570)
207 PLN02507 glutathione reductase 98.5 1.6E-06 3.5E-11 93.8 15.8 34 69-102 23-56 (499)
208 PRK08255 salicylyl-CoA 5-hydro 98.5 1.8E-06 3.8E-11 98.3 16.4 133 73-234 2-143 (765)
209 COG1249 Lpd Pyruvate/2-oxoglut 98.5 3.9E-06 8.5E-11 88.7 17.0 49 69-118 2-50 (454)
210 PRK06327 dihydrolipoamide dehy 98.5 1.5E-06 3.3E-11 93.7 14.3 33 70-102 3-35 (475)
211 PRK06116 glutathione reductase 98.5 1.2E-06 2.7E-11 93.8 13.2 36 70-105 3-38 (450)
212 TIGR02732 zeta_caro_desat caro 98.5 3.3E-06 7.2E-11 90.8 15.8 61 170-232 221-284 (474)
213 COG3380 Predicted NAD/FAD-depe 98.4 6.5E-07 1.4E-11 85.1 8.4 141 73-229 3-157 (331)
214 TIGR02053 MerA mercuric reduct 98.4 7.2E-06 1.6E-10 88.3 17.3 35 72-106 1-35 (463)
215 PF07992 Pyr_redox_2: Pyridine 98.4 1.5E-06 3.2E-11 82.2 10.4 120 73-232 1-122 (201)
216 PRK07818 dihydrolipoamide dehy 98.4 3.7E-06 8.1E-11 90.5 14.6 45 71-117 4-48 (466)
217 PTZ00058 glutathione reductase 98.4 1.4E-06 3E-11 95.0 11.3 48 69-118 46-93 (561)
218 TIGR01350 lipoamide_DH dihydro 98.4 3.8E-06 8.3E-11 90.4 14.2 35 71-105 1-35 (461)
219 TIGR01438 TGR thioredoxin and 98.4 5.9E-06 1.3E-10 89.2 15.4 48 71-118 2-56 (484)
220 PLN02546 glutathione reductase 98.4 4.8E-06 1E-10 90.9 14.6 34 69-102 77-110 (558)
221 PTZ00052 thioredoxin reductase 98.4 1.2E-06 2.5E-11 95.0 9.6 34 70-103 4-37 (499)
222 COG1148 HdrA Heterodisulfide r 98.4 7.4E-07 1.6E-11 91.0 7.3 60 180-242 427-490 (622)
223 PRK12831 putative oxidoreducta 98.4 1E-06 2.2E-11 94.5 8.8 39 69-107 138-176 (464)
224 PRK12779 putative bifunctional 98.4 1.6E-06 3.5E-11 99.9 10.8 108 70-240 305-412 (944)
225 PRK09853 putative selenate red 98.3 2.9E-06 6.2E-11 96.8 12.0 39 70-108 538-576 (1019)
226 PRK09564 coenzyme A disulfide 98.3 4.2E-06 9E-11 89.6 12.5 111 73-232 2-115 (444)
227 TIGR01423 trypano_reduc trypan 98.3 8.7E-06 1.9E-10 87.7 14.3 48 70-118 2-58 (486)
228 PF13450 NAD_binding_8: NAD(P) 98.3 8.4E-07 1.8E-11 68.1 4.6 34 76-109 1-34 (68)
229 PRK07845 flavoprotein disulfid 98.3 1.2E-05 2.5E-10 86.7 15.1 44 73-118 3-46 (466)
230 KOG1238 Glucose dehydrogenase/ 98.3 9E-06 1.9E-10 86.9 13.7 61 181-242 267-329 (623)
231 PRK12769 putative oxidoreducta 98.3 9.3E-06 2E-10 91.0 14.7 39 70-108 326-364 (654)
232 PRK14727 putative mercuric red 98.3 1.2E-05 2.6E-10 86.9 14.9 48 69-117 14-61 (479)
233 COG2303 BetA Choline dehydroge 98.3 1.2E-05 2.7E-10 87.6 15.0 67 173-241 207-276 (542)
234 PRK09897 hypothetical protein; 98.2 2.9E-05 6.2E-10 84.0 16.1 38 72-109 2-42 (534)
235 COG2509 Uncharacterized FAD-de 98.2 2.1E-05 4.5E-10 80.5 13.8 73 160-239 165-237 (486)
236 PF13434 K_oxygenase: L-lysine 98.2 2.7E-06 5.9E-11 87.2 7.7 146 71-230 2-157 (341)
237 PTZ00153 lipoamide dehydrogena 98.2 7.9E-06 1.7E-10 90.5 11.9 50 69-118 114-163 (659)
238 KOG2311 NAD/FAD-utilizing prot 98.2 7.1E-06 1.5E-10 83.7 10.2 150 69-232 26-186 (679)
239 TIGR03315 Se_ygfK putative sel 98.2 4.5E-06 9.7E-11 95.6 9.7 39 70-108 536-574 (1012)
240 PRK11749 dihydropyrimidine deh 98.2 4.8E-06 1E-10 89.4 8.9 38 69-106 138-175 (457)
241 COG1251 NirB NAD(P)H-nitrite r 98.2 1.2E-05 2.6E-10 86.7 11.6 52 475-532 418-469 (793)
242 COG1231 Monoamine oxidase [Ami 98.2 7.8E-06 1.7E-10 84.0 9.6 42 69-110 5-46 (450)
243 PRK12770 putative glutamate sy 98.2 6.3E-06 1.4E-10 85.4 9.2 38 70-107 17-54 (352)
244 PRK06292 dihydrolipoamide dehy 98.2 5.1E-06 1.1E-10 89.3 8.8 36 70-105 2-37 (460)
245 TIGR01316 gltA glutamate synth 98.2 4.7E-06 1E-10 89.2 8.2 38 69-106 131-168 (449)
246 PRK12775 putative trifunctiona 98.2 4.4E-06 9.5E-11 97.2 8.4 110 70-241 429-538 (1006)
247 KOG4716 Thioredoxin reductase 98.1 1.5E-05 3.3E-10 78.0 10.5 63 168-232 238-300 (503)
248 PRK12778 putative bifunctional 98.1 5.9E-06 1.3E-10 94.2 9.0 38 69-106 429-466 (752)
249 PRK13512 coenzyme A disulfide 98.1 1.7E-05 3.7E-10 84.7 12.0 111 73-232 3-117 (438)
250 PRK12810 gltD glutamate syntha 98.1 7.7E-06 1.7E-10 88.1 8.7 38 70-107 142-179 (471)
251 TIGR01816 sdhA_forward succina 98.1 2.9E-05 6.3E-10 85.4 13.1 65 168-234 119-183 (565)
252 PRK12809 putative oxidoreducta 98.1 4.6E-05 9.9E-10 85.2 14.9 39 70-108 309-347 (639)
253 PRK06912 acoL dihydrolipoamide 98.1 5.2E-05 1.1E-09 81.5 14.8 44 73-118 2-45 (458)
254 COG3634 AhpF Alkyl hydroperoxi 98.1 9.9E-06 2.2E-10 79.6 8.0 119 69-234 209-327 (520)
255 TIGR01318 gltD_gamma_fam gluta 98.1 1.1E-05 2.4E-10 86.7 8.9 109 70-242 140-248 (467)
256 PLN02852 ferredoxin-NADP+ redu 98.0 2.1E-05 4.6E-10 84.0 10.2 39 70-108 25-65 (491)
257 PRK05976 dihydrolipoamide dehy 98.0 7.4E-05 1.6E-09 80.7 14.3 102 71-232 180-281 (472)
258 TIGR03452 mycothione_red mycot 98.0 1.1E-05 2.3E-10 86.5 7.7 45 71-119 2-46 (452)
259 PRK07846 mycothione reductase; 98.0 4.3E-05 9.4E-10 81.8 11.9 45 71-119 1-45 (451)
260 TIGR01350 lipoamide_DH dihydro 98.0 9.3E-05 2E-09 79.6 14.3 100 71-232 170-269 (461)
261 TIGR01317 GOGAT_sm_gam glutama 98.0 2.4E-05 5.1E-10 84.5 9.6 36 70-105 142-177 (485)
262 PRK04965 NADH:flavorubredoxin 98.0 0.00012 2.5E-09 76.7 14.1 108 71-241 141-249 (377)
263 PRK12771 putative glutamate sy 98.0 0.0001 2.2E-09 81.3 14.4 39 70-108 136-174 (564)
264 PRK07818 dihydrolipoamide dehy 98.0 0.00013 2.9E-09 78.6 14.8 101 72-232 173-273 (466)
265 PF13454 NAD_binding_9: FAD-NA 98.0 0.00011 2.4E-09 66.6 12.1 35 75-109 1-40 (156)
266 PRK12814 putative NADPH-depend 98.0 2.6E-05 5.6E-10 87.3 9.5 39 70-108 192-230 (652)
267 PRK06416 dihydrolipoamide dehy 97.9 0.00011 2.5E-09 79.0 14.0 100 72-232 173-272 (462)
268 COG2907 Predicted NAD/FAD-bind 97.9 5.2E-05 1.1E-09 74.8 9.9 39 70-109 7-45 (447)
269 PRK06115 dihydrolipoamide dehy 97.9 0.00016 3.4E-09 77.9 14.7 103 71-232 174-276 (466)
270 KOG0029 Amine oxidase [Seconda 97.9 1.1E-05 2.5E-10 86.3 5.7 40 69-108 13-52 (501)
271 TIGR03169 Nterm_to_SelD pyridi 97.9 2.1E-05 4.6E-10 81.8 7.3 104 73-232 1-107 (364)
272 PRK09754 phenylpropionate diox 97.9 6.8E-05 1.5E-09 79.0 11.1 107 72-232 4-112 (396)
273 PRK06912 acoL dihydrolipoamide 97.9 0.00018 3.9E-09 77.3 14.4 99 71-232 170-268 (458)
274 TIGR01316 gltA glutamate synth 97.9 0.00014 3.1E-09 77.8 13.1 101 72-233 273-388 (449)
275 PRK06327 dihydrolipoamide dehy 97.9 0.00025 5.5E-09 76.6 14.6 102 72-233 184-285 (475)
276 PRK09754 phenylpropionate diox 97.8 0.00021 4.6E-09 75.3 13.5 98 72-233 145-242 (396)
277 PRK04965 NADH:flavorubredoxin 97.8 0.00015 3.3E-09 75.8 12.1 106 72-232 3-111 (377)
278 KOG0405 Pyridine nucleotide-di 97.8 0.00011 2.4E-09 72.5 10.0 50 69-119 18-67 (478)
279 TIGR03140 AhpF alkyl hydropero 97.8 0.00016 3.4E-09 78.9 12.4 97 72-232 353-450 (515)
280 PRK13984 putative oxidoreducta 97.8 4E-05 8.6E-10 85.4 7.9 39 70-108 282-320 (604)
281 PLN02576 protoporphyrinogen ox 97.8 2.4E-05 5.1E-10 85.1 5.8 40 69-108 10-50 (496)
282 PRK12831 putative oxidoreducta 97.8 0.00021 4.7E-09 76.7 12.8 101 72-233 282-397 (464)
283 TIGR00031 UDP-GALP_mutase UDP- 97.8 2.7E-05 5.8E-10 80.6 5.4 37 72-108 2-38 (377)
284 PTZ00318 NADH dehydrogenase-li 97.8 0.00012 2.5E-09 77.9 10.4 114 70-232 9-125 (424)
285 TIGR02374 nitri_red_nirB nitri 97.8 6E-05 1.3E-09 86.1 8.4 56 470-530 410-465 (785)
286 TIGR01292 TRX_reduct thioredox 97.8 0.00031 6.6E-09 70.7 12.7 97 71-232 141-238 (300)
287 PRK05249 soluble pyridine nucl 97.8 0.00035 7.6E-09 75.2 13.8 99 71-233 175-273 (461)
288 TIGR01421 gluta_reduc_1 glutat 97.7 0.00042 9.2E-09 74.2 14.1 100 72-233 167-266 (450)
289 PLN02268 probable polyamine ox 97.7 3.3E-05 7.1E-10 82.5 5.4 37 72-108 1-37 (435)
290 PRK07251 pyridine nucleotide-d 97.7 0.00034 7.3E-09 74.8 13.1 97 71-232 157-253 (438)
291 COG1252 Ndh NADH dehydrogenase 97.7 0.00018 3.8E-09 74.5 10.1 100 72-238 156-268 (405)
292 PRK15317 alkyl hydroperoxide r 97.7 0.00038 8.2E-09 76.0 13.0 97 72-232 352-449 (517)
293 PRK06116 glutathione reductase 97.7 0.00054 1.2E-08 73.5 14.0 99 71-232 167-265 (450)
294 PRK06467 dihydrolipoamide dehy 97.7 0.00057 1.2E-08 73.7 14.0 100 72-232 175-274 (471)
295 PRK11883 protoporphyrinogen ox 97.7 4.2E-05 9.1E-10 82.0 5.1 36 73-108 2-39 (451)
296 PRK06567 putative bifunctional 97.7 0.00011 2.4E-09 83.2 8.5 37 69-105 381-417 (1028)
297 TIGR00562 proto_IX_ox protopor 97.7 4.5E-05 9.8E-10 82.1 5.3 37 72-108 3-43 (462)
298 PRK14727 putative mercuric red 97.7 0.00068 1.5E-08 73.3 14.1 97 72-234 189-285 (479)
299 PRK09564 coenzyme A disulfide 97.7 0.00044 9.5E-09 74.1 12.6 99 71-233 149-247 (444)
300 PTZ00058 glutathione reductase 97.7 0.00051 1.1E-08 75.2 13.2 99 71-231 237-335 (561)
301 COG3349 Uncharacterized conser 97.7 4.8E-05 1E-09 79.6 5.0 36 73-108 2-37 (485)
302 PRK10262 thioredoxin reductase 97.6 0.0006 1.3E-08 69.7 12.8 102 72-233 147-249 (321)
303 PLN02507 glutathione reductase 97.6 0.0007 1.5E-08 73.5 13.8 98 71-232 203-300 (499)
304 TIGR01438 TGR thioredoxin and 97.6 0.00074 1.6E-08 73.0 13.7 99 72-232 181-279 (484)
305 PRK08010 pyridine nucleotide-d 97.6 0.00081 1.8E-08 71.9 13.8 97 72-233 159-255 (441)
306 PRK14989 nitrite reductase sub 97.6 0.00022 4.8E-09 81.7 9.6 53 471-529 423-475 (847)
307 TIGR01424 gluta_reduc_2 glutat 97.6 0.00088 1.9E-08 71.8 13.6 98 71-232 166-263 (446)
308 PRK11749 dihydropyrimidine deh 97.6 0.00069 1.5E-08 72.8 12.8 101 71-233 273-388 (457)
309 PRK05335 tRNA (uracil-5-)-meth 97.6 7.8E-05 1.7E-09 77.5 5.1 33 72-104 3-35 (436)
310 PF06100 Strep_67kDa_ant: Stre 97.6 0.0031 6.7E-08 66.2 16.8 63 169-233 208-275 (500)
311 PF00996 GDI: GDP dissociation 97.6 0.0011 2.3E-08 69.8 13.4 53 168-227 232-284 (438)
312 COG0562 Glf UDP-galactopyranos 97.6 0.0001 2.2E-09 72.2 5.3 37 71-107 1-38 (374)
313 PRK06292 dihydrolipoamide dehy 97.6 0.0012 2.5E-08 71.1 14.2 99 71-231 169-267 (460)
314 PRK14694 putative mercuric red 97.6 0.0012 2.5E-08 71.3 14.1 96 72-233 179-274 (468)
315 TIGR03385 CoA_CoA_reduc CoA-di 97.5 0.00092 2E-08 71.2 13.1 97 72-233 138-234 (427)
316 PLN02568 polyamine oxidase 97.5 0.0001 2.2E-09 80.3 5.8 40 69-108 3-47 (539)
317 PRK07845 flavoprotein disulfid 97.5 0.0012 2.6E-08 71.1 13.9 98 72-233 178-275 (466)
318 PF04324 Fer2_BFD: BFD-like [2 97.5 2.6E-05 5.7E-10 57.0 0.8 49 475-527 6-54 (55)
319 TIGR01423 trypano_reduc trypan 97.5 0.0011 2.5E-08 71.4 13.6 99 71-232 187-288 (486)
320 PRK13748 putative mercuric red 97.5 0.0012 2.5E-08 73.1 13.7 96 72-233 271-366 (561)
321 PTZ00153 lipoamide dehydrogena 97.5 0.0013 2.9E-08 73.1 13.9 103 72-231 313-426 (659)
322 COG0493 GltD NADPH-dependent g 97.5 0.00018 3.9E-09 76.2 6.4 106 72-242 124-230 (457)
323 PRK12770 putative glutamate sy 97.5 0.0011 2.5E-08 68.6 12.1 99 72-233 173-287 (352)
324 COG0446 HcaD Uncharacterized N 97.5 0.0007 1.5E-08 71.4 10.7 101 71-233 136-238 (415)
325 PRK13512 coenzyme A disulfide 97.4 0.0012 2.6E-08 70.5 12.3 93 72-232 149-241 (438)
326 PTZ00052 thioredoxin reductase 97.4 0.0018 3.9E-08 70.3 13.7 96 72-232 183-278 (499)
327 PLN02676 polyamine oxidase 97.4 0.00017 3.8E-09 77.8 5.8 39 70-108 25-64 (487)
328 KOG2960 Protein involved in th 97.4 0.0003 6.6E-09 64.7 6.4 35 70-104 75-111 (328)
329 PRK12416 protoporphyrinogen ox 97.4 0.00014 2.9E-09 78.4 4.9 36 73-108 3-44 (463)
330 PRK12778 putative bifunctional 97.4 0.0013 2.9E-08 75.1 12.9 101 72-233 571-687 (752)
331 PRK07846 mycothione reductase; 97.4 0.0019 4.1E-08 69.2 13.3 98 71-233 166-263 (451)
332 PRK12810 gltD glutamate syntha 97.4 0.0012 2.6E-08 71.2 11.7 109 72-232 282-400 (471)
333 PRK12779 putative bifunctional 97.4 0.0014 3E-08 76.0 12.8 102 72-233 448-563 (944)
334 COG1232 HemY Protoporphyrinoge 97.4 0.00017 3.8E-09 75.6 4.9 36 73-108 2-39 (444)
335 KOG3855 Monooxygenase involved 97.4 0.0057 1.2E-07 62.2 15.2 167 69-244 34-228 (481)
336 TIGR00137 gid_trmFO tRNA:m(5)U 97.4 0.00019 4.2E-09 75.1 4.9 33 72-104 1-33 (433)
337 KOG0404 Thioredoxin reductase 97.4 0.001 2.2E-08 61.9 8.8 121 70-235 7-127 (322)
338 TIGR01318 gltD_gamma_fam gluta 97.3 0.0021 4.6E-08 69.1 12.8 100 72-232 283-398 (467)
339 PTZ00188 adrenodoxin reductase 97.3 0.0005 1.1E-08 72.8 7.4 38 71-108 39-77 (506)
340 PTZ00318 NADH dehydrogenase-li 97.3 0.003 6.6E-08 67.1 13.0 97 73-237 175-285 (424)
341 PLN02546 glutathione reductase 97.3 0.0029 6.4E-08 69.3 13.1 100 71-233 252-351 (558)
342 COG1252 Ndh NADH dehydrogenase 97.3 0.0007 1.5E-08 70.1 7.6 106 72-233 4-112 (405)
343 COG4529 Uncharacterized protei 97.2 0.0039 8.5E-08 65.0 12.7 39 72-110 2-44 (474)
344 PF13434 K_oxygenase: L-lysine 97.2 0.0073 1.6E-07 62.1 14.7 142 69-230 188-339 (341)
345 TIGR03452 mycothione_red mycot 97.2 0.0042 9E-08 66.6 13.5 97 71-232 169-265 (452)
346 PLN02529 lysine-specific histo 97.2 0.00039 8.5E-09 77.8 5.6 39 70-108 159-197 (738)
347 PLN02328 lysine-specific histo 97.2 0.00039 8.5E-09 78.2 5.6 39 70-108 237-275 (808)
348 KOG1336 Monodehydroascorbate/f 97.1 0.0032 7E-08 65.3 10.6 101 71-232 213-313 (478)
349 PF10518 TAT_signal: TAT (twin 97.1 0.00029 6.2E-09 42.5 1.8 18 1-18 2-19 (26)
350 TIGR03143 AhpF_homolog putativ 97.1 0.0054 1.2E-07 67.5 12.7 96 72-232 144-246 (555)
351 PRK12775 putative trifunctiona 96.9 0.0082 1.8E-07 70.4 12.9 101 72-233 572-687 (1006)
352 TIGR01372 soxA sarcosine oxida 96.9 0.0076 1.7E-07 70.8 12.4 93 72-232 318-411 (985)
353 PLN03000 amine oxidase 96.7 0.0019 4.1E-08 73.0 5.6 39 70-108 183-221 (881)
354 KOG1276 Protoporphyrinogen oxi 96.7 0.0017 3.6E-08 66.3 4.6 39 70-108 10-50 (491)
355 PRK12814 putative NADPH-depend 96.6 0.02 4.4E-07 64.3 12.9 99 72-232 324-437 (652)
356 PLN02976 amine oxidase 96.6 0.0025 5.4E-08 74.7 5.6 40 70-109 692-731 (1713)
357 PRK13984 putative oxidoreducta 96.6 0.018 4E-07 64.1 12.3 53 178-232 472-538 (604)
358 COG3486 IucD Lysine/ornithine 96.6 0.023 5E-07 58.0 11.3 147 69-230 3-155 (436)
359 TIGR03169 Nterm_to_SelD pyridi 96.5 0.036 7.7E-07 57.6 13.1 95 72-235 146-246 (364)
360 TIGR03862 flavo_PP4765 unchara 96.5 0.058 1.3E-06 55.9 14.0 57 167-232 85-141 (376)
361 PF01593 Amino_oxidase: Flavin 96.5 0.012 2.6E-07 62.0 9.3 52 173-232 214-265 (450)
362 KOG0399 Glutamate synthase [Am 96.4 0.0091 2E-07 67.3 7.9 38 70-107 1784-1821(2142)
363 KOG0685 Flavin-containing amin 96.4 0.0047 1E-07 64.0 5.3 40 69-108 19-59 (498)
364 KOG1800 Ferredoxin/adrenodoxin 96.3 0.011 2.3E-07 59.6 7.3 39 70-108 19-59 (468)
365 PRK09853 putative selenate red 96.1 0.057 1.2E-06 62.5 12.7 33 72-104 669-703 (1019)
366 TIGR03315 Se_ygfK putative sel 96.0 0.082 1.8E-06 61.4 13.5 34 71-104 666-701 (1012)
367 PRK10509 bacterioferritin-asso 95.9 0.008 1.7E-07 45.2 3.2 50 475-529 6-55 (64)
368 COG0492 TrxB Thioredoxin reduc 95.9 0.064 1.4E-06 54.1 10.8 94 72-232 144-238 (305)
369 TIGR01317 GOGAT_sm_gam glutama 95.8 0.098 2.1E-06 56.6 12.3 33 72-104 284-317 (485)
370 PLN02852 ferredoxin-NADP+ redu 95.7 0.13 2.7E-06 55.5 12.6 52 181-232 288-354 (491)
371 PRK06567 putative bifunctional 95.6 0.044 9.4E-07 62.8 8.9 56 175-231 647-727 (1028)
372 COG3634 AhpF Alkyl hydroperoxi 95.5 0.11 2.4E-06 51.8 10.0 95 72-230 355-450 (520)
373 COG2906 Bfd Bacterioferritin-a 95.4 0.024 5.2E-07 41.6 3.8 49 475-529 6-54 (63)
374 COG1206 Gid NAD(FAD)-utilizing 95.3 0.017 3.8E-07 57.0 3.8 34 72-105 4-37 (439)
375 PF02737 3HCDH_N: 3-hydroxyacy 95.2 0.026 5.6E-07 52.4 4.6 31 74-104 2-32 (180)
376 KOG1439 RAB proteins geranylge 95.0 0.11 2.4E-06 53.0 8.5 40 71-110 4-43 (440)
377 COG4716 Myosin-crossreactive a 94.9 0.026 5.7E-07 56.7 4.0 63 169-233 228-293 (587)
378 KOG2495 NADH-dehydrogenase (ub 94.9 0.081 1.8E-06 54.4 7.5 104 72-239 219-336 (491)
379 KOG0404 Thioredoxin reductase 94.9 0.19 4E-06 47.2 9.2 94 73-230 159-253 (322)
380 TIGR02811 formate_TAT formate 94.4 0.031 6.6E-07 42.2 2.3 18 1-18 9-26 (66)
381 KOG3851 Sulfide:quinone oxidor 94.4 0.017 3.6E-07 56.9 1.1 36 69-104 37-74 (446)
382 PF02558 ApbA: Ketopantoate re 94.3 0.059 1.3E-06 48.2 4.6 30 74-103 1-30 (151)
383 PF01210 NAD_Gly3P_dh_N: NAD-d 94.2 0.055 1.2E-06 48.9 4.1 30 74-103 2-31 (157)
384 COG0569 TrkA K+ transport syst 94.0 0.069 1.5E-06 51.4 4.6 32 73-104 2-33 (225)
385 TIGR01409 TAT_signal_seq Tat ( 93.7 0.047 1E-06 33.9 1.8 16 1-16 1-16 (29)
386 PRK06249 2-dehydropantoate 2-r 93.6 0.11 2.3E-06 52.9 5.3 35 69-103 3-37 (313)
387 COG5044 MRS6 RAB proteins gera 93.3 0.13 2.8E-06 51.9 5.2 40 69-108 4-43 (434)
388 PRK06129 3-hydroxyacyl-CoA deh 93.3 0.096 2.1E-06 53.1 4.4 32 73-104 4-35 (308)
389 TIGR02000 NifU_proper Fe-S clu 93.2 0.054 1.2E-06 54.0 2.4 50 474-528 138-187 (290)
390 PRK07819 3-hydroxybutyryl-CoA 93.2 0.12 2.5E-06 51.9 4.7 32 73-104 7-38 (286)
391 PRK01438 murD UDP-N-acetylmura 93.2 0.11 2.3E-06 56.4 4.8 33 72-104 17-49 (480)
392 KOG4405 GDP dissociation inhib 93.1 0.097 2.1E-06 53.3 3.9 40 69-108 6-45 (547)
393 PF03721 UDPG_MGDP_dh_N: UDP-g 93.1 0.1 2.3E-06 48.5 4.0 32 73-104 2-33 (185)
394 PRK07066 3-hydroxybutyryl-CoA 93.1 0.11 2.4E-06 52.7 4.4 32 73-104 9-40 (321)
395 KOG1336 Monodehydroascorbate/f 93.0 0.33 7.2E-06 50.7 7.7 103 71-230 74-179 (478)
396 PRK02705 murD UDP-N-acetylmura 92.4 0.14 3.1E-06 55.0 4.4 32 73-104 2-33 (459)
397 TIGR02354 thiF_fam2 thiamine b 92.4 0.28 6.2E-06 46.2 5.9 35 71-105 21-56 (200)
398 COG3486 IucD Lysine/ornithine 92.3 1.1 2.3E-05 46.2 10.1 49 181-231 291-339 (436)
399 PRK08293 3-hydroxybutyryl-CoA 92.3 0.18 3.8E-06 50.6 4.7 31 73-103 5-35 (287)
400 KOG1346 Programmed cell death 92.2 0.66 1.4E-05 47.6 8.4 57 166-230 391-447 (659)
401 PRK09260 3-hydroxybutyryl-CoA 92.2 0.18 4E-06 50.5 4.6 32 73-104 3-34 (288)
402 PRK05708 2-dehydropantoate 2-r 92.2 0.2 4.3E-06 50.7 4.9 32 72-103 3-34 (305)
403 PRK14106 murD UDP-N-acetylmura 92.1 0.21 4.5E-06 53.6 5.3 34 71-104 5-38 (450)
404 COG1249 Lpd Pyruvate/2-oxoglut 91.8 0.22 4.7E-06 53.1 4.8 97 72-230 174-270 (454)
405 TIGR02053 MerA mercuric reduct 91.6 0.22 4.7E-06 53.7 4.8 100 72-232 167-266 (463)
406 KOG2403 Succinate dehydrogenas 91.5 0.29 6.3E-06 51.9 5.2 34 70-103 54-87 (642)
407 COG0446 HcaD Uncharacterized N 91.4 1.3 2.9E-05 46.3 10.5 46 179-235 64-109 (415)
408 PF01262 AlaDh_PNT_C: Alanine 91.4 0.3 6.4E-06 44.7 4.7 33 71-103 20-52 (168)
409 TIGR01470 cysG_Nterm siroheme 91.4 0.27 5.9E-06 46.6 4.5 33 71-103 9-41 (205)
410 PRK06035 3-hydroxyacyl-CoA deh 91.3 0.25 5.5E-06 49.6 4.6 32 73-104 5-36 (291)
411 PRK07530 3-hydroxybutyryl-CoA 91.3 0.26 5.7E-06 49.5 4.7 31 73-103 6-36 (292)
412 PRK06370 mercuric reductase; V 91.0 0.26 5.7E-06 53.0 4.7 101 71-232 171-271 (463)
413 PRK06719 precorrin-2 dehydroge 91.0 0.32 7E-06 43.9 4.5 34 70-103 12-45 (157)
414 COG0686 Ald Alanine dehydrogen 90.8 0.21 4.5E-06 49.3 3.2 34 70-103 167-200 (371)
415 PF13241 NAD_binding_7: Putati 90.7 0.21 4.5E-06 41.6 2.8 34 70-103 6-39 (103)
416 PF13738 Pyr_redox_3: Pyridine 90.7 0.26 5.6E-06 46.3 3.8 35 70-104 166-200 (203)
417 COG1179 Dinucleotide-utilizing 90.7 1.6 3.5E-05 41.8 8.8 38 71-108 30-68 (263)
418 KOG2304 3-hydroxyacyl-CoA dehy 90.7 0.23 5E-06 46.6 3.2 33 72-104 12-44 (298)
419 PRK12921 2-dehydropantoate 2-r 90.5 0.32 7E-06 49.0 4.6 30 73-102 2-31 (305)
420 PRK05808 3-hydroxybutyryl-CoA 90.5 0.33 7.3E-06 48.4 4.6 32 73-104 5-36 (282)
421 COG1251 NirB NAD(P)H-nitrite r 90.5 1.7 3.7E-05 48.1 10.1 55 469-528 472-526 (793)
422 PF01488 Shikimate_DH: Shikima 90.5 0.49 1.1E-05 41.5 5.1 34 70-103 11-45 (135)
423 PRK06718 precorrin-2 dehydroge 90.4 0.41 9E-06 45.2 4.9 34 70-103 9-42 (202)
424 KOG2755 Oxidoreductase [Genera 90.4 0.2 4.3E-06 48.2 2.6 32 74-105 2-35 (334)
425 PF02254 TrkA_N: TrkA-N domain 90.2 0.48 1E-05 40.1 4.7 31 74-104 1-31 (116)
426 PRK06522 2-dehydropantoate 2-r 90.0 0.39 8.4E-06 48.4 4.7 31 73-103 2-32 (304)
427 TIGR03385 CoA_CoA_reduc CoA-di 89.9 1.4 2.9E-05 46.9 8.9 47 179-232 55-103 (427)
428 cd05292 LDH_2 A subgroup of L- 89.9 0.41 9E-06 48.5 4.7 32 73-104 2-35 (308)
429 TIGR00518 alaDH alanine dehydr 89.8 0.44 9.6E-06 49.6 4.9 33 71-103 167-199 (370)
430 PRK08229 2-dehydropantoate 2-r 89.7 0.38 8.3E-06 49.4 4.4 31 73-103 4-34 (341)
431 COG1004 Ugd Predicted UDP-gluc 89.7 0.43 9.3E-06 49.0 4.5 32 73-104 2-33 (414)
432 PRK07688 thiamine/molybdopteri 89.6 0.49 1.1E-05 48.5 5.0 35 71-105 24-59 (339)
433 PLN02545 3-hydroxybutyryl-CoA 89.6 0.45 9.7E-06 47.9 4.6 32 73-104 6-37 (295)
434 cd01080 NAD_bind_m-THF_DH_Cycl 89.5 0.56 1.2E-05 42.9 4.8 34 70-103 43-77 (168)
435 TIGR01763 MalateDH_bact malate 89.5 0.45 9.8E-06 48.1 4.6 31 73-103 3-34 (305)
436 PF00899 ThiF: ThiF family; I 89.4 0.48 1E-05 41.5 4.2 35 72-106 3-38 (135)
437 PRK15116 sulfur acceptor prote 89.3 0.8 1.7E-05 45.2 6.0 37 70-106 29-66 (268)
438 cd01487 E1_ThiF_like E1_ThiF_l 89.3 0.56 1.2E-05 43.2 4.7 32 74-105 2-34 (174)
439 PRK11730 fadB multifunctional 89.3 0.41 8.9E-06 54.3 4.5 32 73-104 315-346 (715)
440 TIGR02279 PaaC-3OHAcCoADH 3-hy 89.1 0.47 1E-05 51.4 4.6 32 73-104 7-38 (503)
441 TIGR02437 FadB fatty oxidation 89.0 0.44 9.6E-06 54.0 4.5 32 73-104 315-346 (714)
442 cd00401 AdoHcyase S-adenosyl-L 89.0 0.51 1.1E-05 49.5 4.6 33 72-104 203-235 (413)
443 cd01483 E1_enzyme_family Super 88.9 0.72 1.6E-05 40.8 5.0 33 74-106 2-35 (143)
444 PRK06130 3-hydroxybutyryl-CoA 88.8 0.54 1.2E-05 47.6 4.7 31 73-103 6-36 (311)
445 PRK12475 thiamine/molybdopteri 88.8 0.58 1.3E-05 48.0 4.8 35 71-105 24-59 (338)
446 COG1748 LYS9 Saccharopine dehy 88.7 0.54 1.2E-05 48.7 4.5 32 72-103 2-34 (389)
447 COG1250 FadB 3-hydroxyacyl-CoA 88.7 0.49 1.1E-05 47.4 4.1 31 73-103 5-35 (307)
448 PRK08268 3-hydroxy-acyl-CoA de 88.6 0.61 1.3E-05 50.7 5.0 32 73-104 9-40 (507)
449 PRK04148 hypothetical protein; 88.5 0.46 9.9E-06 41.5 3.3 32 72-104 18-49 (134)
450 TIGR02356 adenyl_thiF thiazole 88.2 0.75 1.6E-05 43.5 4.9 36 70-105 20-56 (202)
451 PRK14619 NAD(P)H-dependent gly 88.2 0.7 1.5E-05 46.8 4.9 35 70-104 3-37 (308)
452 PRK09424 pntA NAD(P) transhydr 88.1 0.61 1.3E-05 50.3 4.7 34 71-104 165-198 (509)
453 TIGR02441 fa_ox_alpha_mit fatt 87.9 0.55 1.2E-05 53.4 4.4 32 73-104 337-368 (737)
454 PF13478 XdhC_C: XdhC Rossmann 87.9 0.57 1.2E-05 41.2 3.6 31 74-104 1-31 (136)
455 PRK14620 NAD(P)H-dependent gly 87.7 0.7 1.5E-05 47.2 4.6 31 73-103 2-32 (326)
456 PRK08644 thiamine biosynthesis 87.6 0.89 1.9E-05 43.3 4.9 35 71-105 28-63 (212)
457 cd05311 NAD_bind_2_malic_enz N 87.4 0.83 1.8E-05 44.0 4.7 33 72-104 26-61 (226)
458 cd01075 NAD_bind_Leu_Phe_Val_D 87.1 0.87 1.9E-05 42.9 4.6 32 72-103 29-60 (200)
459 cd01339 LDH-like_MDH L-lactate 87.0 0.7 1.5E-05 46.6 4.1 30 74-103 1-31 (300)
460 PRK00066 ldh L-lactate dehydro 86.9 1 2.2E-05 45.8 5.2 35 69-103 4-40 (315)
461 TIGR03026 NDP-sugDHase nucleot 86.9 0.74 1.6E-05 48.7 4.4 32 73-104 2-33 (411)
462 PRK14618 NAD(P)H-dependent gly 86.8 0.84 1.8E-05 46.7 4.6 32 72-103 5-36 (328)
463 PTZ00082 L-lactate dehydrogena 86.7 0.92 2E-05 46.2 4.8 33 72-104 7-40 (321)
464 PRK00094 gpsA NAD(P)H-dependen 86.7 0.88 1.9E-05 46.3 4.7 31 73-103 3-33 (325)
465 PRK11064 wecC UDP-N-acetyl-D-m 86.5 0.9 1.9E-05 48.1 4.8 33 72-104 4-36 (415)
466 PRK07531 bifunctional 3-hydrox 86.5 0.83 1.8E-05 49.6 4.6 31 73-103 6-36 (495)
467 PRK11154 fadJ multifunctional 86.4 0.77 1.7E-05 52.1 4.4 31 73-103 311-342 (708)
468 TIGR02355 moeB molybdopterin s 86.3 1.3 2.9E-05 43.0 5.5 36 71-106 24-60 (240)
469 PRK04308 murD UDP-N-acetylmura 86.3 1.1 2.3E-05 48.0 5.3 33 72-104 6-38 (445)
470 PRK12549 shikimate 5-dehydroge 86.2 0.94 2E-05 45.3 4.5 33 71-103 127-160 (284)
471 PRK02472 murD UDP-N-acetylmura 86.0 0.97 2.1E-05 48.4 4.8 33 72-104 6-38 (447)
472 TIGR02440 FadJ fatty oxidation 85.8 0.9 1.9E-05 51.5 4.6 32 73-104 306-338 (699)
473 TIGR03736 PRTRC_ThiF PRTRC sys 85.7 1.1 2.4E-05 43.5 4.5 37 69-105 9-56 (244)
474 PRK07417 arogenate dehydrogena 85.7 0.97 2.1E-05 45.1 4.3 31 73-103 2-32 (279)
475 PRK06223 malate dehydrogenase; 85.3 1.2 2.5E-05 45.2 4.8 32 72-103 3-35 (307)
476 TIGR00936 ahcY adenosylhomocys 85.2 1.1 2.4E-05 46.9 4.6 34 71-104 195-228 (406)
477 PF00056 Ldh_1_N: lactate/mala 85.2 1.5 3.3E-05 38.8 4.8 31 73-103 2-35 (141)
478 PF00670 AdoHcyase_NAD: S-aden 85.2 1.1 2.4E-05 40.4 3.9 33 72-104 24-56 (162)
479 PRK08328 hypothetical protein; 84.9 1.4 3.1E-05 42.5 5.0 35 71-105 27-62 (231)
480 cd05291 HicDH_like L-2-hydroxy 84.7 1.3 2.8E-05 44.9 4.7 32 73-104 2-35 (306)
481 PRK15057 UDP-glucose 6-dehydro 84.7 1.1 2.5E-05 46.8 4.4 31 73-104 2-32 (388)
482 PRK05690 molybdopterin biosynt 84.4 1.4 3.1E-05 42.9 4.7 35 71-105 32-67 (245)
483 PF03446 NAD_binding_2: NAD bi 84.4 1.5 3.2E-05 39.8 4.5 31 73-103 3-33 (163)
484 PLN02353 probable UDP-glucose 84.1 1.3 2.9E-05 47.5 4.7 32 72-103 2-35 (473)
485 PF08491 SE: Squalene epoxidas 83.9 6 0.00013 39.0 8.7 30 361-390 137-167 (276)
486 cd01078 NAD_bind_H4MPT_DH NADP 83.6 1.7 3.7E-05 40.6 4.8 32 72-103 29-61 (194)
487 TIGR02853 spore_dpaA dipicolin 83.6 1.5 3.2E-05 43.9 4.5 33 71-103 151-183 (287)
488 PRK05476 S-adenosyl-L-homocyst 83.5 1.4 3.1E-05 46.4 4.5 34 71-104 212-245 (425)
489 TIGR01915 npdG NADPH-dependent 83.4 1.7 3.6E-05 41.6 4.7 31 73-103 2-33 (219)
490 TIGR00561 pntA NAD(P) transhyd 83.3 1.5 3.3E-05 47.3 4.7 34 71-104 164-197 (511)
491 PRK12548 shikimate 5-dehydroge 83.3 1.6 3.5E-05 43.7 4.7 33 71-103 126-159 (289)
492 PRK08223 hypothetical protein; 83.3 2.7 5.9E-05 41.8 6.1 35 71-105 27-62 (287)
493 cd00757 ThiF_MoeB_HesA_family 83.1 1.8 3.8E-05 41.8 4.8 35 71-105 21-56 (228)
494 cd01485 E1-1_like Ubiquitin ac 83.0 2.2 4.9E-05 40.1 5.3 35 71-105 19-54 (198)
495 PTZ00117 malate dehydrogenase; 83.0 1.8 4E-05 44.0 5.0 34 71-104 5-39 (319)
496 TIGR01505 tartro_sem_red 2-hyd 82.8 1.4 3.1E-05 44.1 4.1 30 74-103 2-31 (291)
497 cd00755 YgdL_like Family of ac 82.7 2.8 6.1E-05 40.5 5.9 36 71-106 11-47 (231)
498 cd05191 NAD_bind_amino_acid_DH 82.6 2.5 5.4E-05 33.7 4.7 31 72-102 24-55 (86)
499 PRK08306 dipicolinate synthase 82.6 1.8 3.9E-05 43.6 4.7 33 71-103 152-184 (296)
500 COG1893 ApbA Ketopantoate redu 82.4 1.5 3.3E-05 44.3 4.1 31 73-103 2-32 (307)
No 1
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=100.00 E-value=6.8e-77 Score=651.27 Aligned_cols=515 Identities=83% Similarity=1.263 Sum_probs=425.1
Q ss_pred CCCCCCCchHHHHHHHHhhcCCCCccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccchhhHHHH
Q 008503 48 DSKAVVPSRVVQESALIAANNSNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKA 127 (563)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~ 127 (563)
...+..+.|...+..+.......+|||||||||++|+++|++|+++|++|+|||++++++|+|++|++++|+|++|+.+.
T Consensus 48 ~~~~~~~~r~~~~~~~~~~~~~~~~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~d~a~GtSsrss~lihgg~ryl~~~ 127 (627)
T PLN02464 48 DPNASVPSRSAQESALIGATAAEPLDVLVVGGGATGAGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKA 127 (627)
T ss_pred ccCCCCcChHHHHHHhhccccCCccCEEEECCCHHHHHHHHHHHhCCCEEEEEeccccCCCcccchhhhhhhHHHHHHHH
Confidence 34455677777777662100145699999999999999999999999999999999999999999999999999997754
Q ss_pred hhccCcccHHHHHHH------------------------------------HHHh-------h----h-c----------
Q 008503 128 VFNLDYGQLKLVFHA------------------------------------LEER-------K----Q-A---------- 149 (563)
Q Consensus 128 ~~~~~~~~~~~~~~~------------------------------------l~~~-------~----~-~---------- 149 (563)
....++..+.++++. +... . . +
T Consensus 128 ~~~~~~~~~~l~~e~l~er~~l~~~ap~l~~~l~~~~p~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~~e~~~~~P 207 (627)
T PLN02464 128 VFQLDYGQLKLVFHALEERKQLIENAPHLCHALPIMTPCYDWFEVPYYWAGLKAYDLVAGPRLLHLSRYYSAKESLELFP 207 (627)
T ss_pred hhCCCccceeehHHHHHHHHHHHhhChhhccccceeeeccchhhhHHHHHHHHHHHHhcCCcCCCCceEECHHHHHHhCC
Confidence 222111111111000 0000 0 0 0
Q ss_pred -ccC-----CcceEEEecCceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcC-CCCcEEEEEEEECCCCcEEEEEeC
Q 008503 150 -KDR-----SLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDE-ASNRIIGARIRNNLSGKEFDTYAK 222 (563)
Q Consensus 150 -~~~-----~~~~~~~~~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~-~~g~v~gv~~~d~~~g~~~~i~A~ 222 (563)
... .+.+++.|.++++||.+++..+++.|.++|++++++++|+++..++ + +++++|++.|..+++.+.+.|+
T Consensus 208 ~L~~~~~~~~l~ga~~~~Dg~vdp~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~-g~v~gV~v~d~~tg~~~~i~a~ 286 (627)
T PLN02464 208 TLAKKGKDGSLKGTVVYYDGQMNDSRLNVALACTAALAGAAVLNYAEVVSLIKDEST-GRIVGARVRDNLTGKEFDVYAK 286 (627)
T ss_pred CCCccccccceeEEEEecCcEEcHHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCC-CcEEEEEEEECCCCcEEEEEeC
Confidence 222 2667788899999999999999999999999999999999998764 3 6899999887666765689999
Q ss_pred eEEEccCcChhhhhhhhcCCCCCeeecCCceEEEecCCcCCCCcccccccCCCCcEEEEeecCCcEEeeecCCCCCCCCC
Q 008503 223 VVVNAAGPFCDSVRKLADQNVQPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWLGRTVAGTTDSDTVITLL 302 (563)
Q Consensus 223 ~VI~AtG~~s~~l~~~~g~~~~~~v~~~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~P~~g~~~iG~t~~~~~~~~~ 302 (563)
.||||+|+|++.+.++.+....+.+.|.+|.|++++....+....++++.+.+++.+|++||.|.+++|+|++..+.+.+
T Consensus 287 ~VVnAaGaws~~l~~~~g~~~~~~I~p~kG~hlvl~~~~~~~~~~~i~~~~~dgr~~~~~P~~g~~liGtTd~~~~~~~~ 366 (627)
T PLN02464 287 VVVNAAGPFCDEVRKMADGKAKPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWLGRTVAGTTDSKTPITML 366 (627)
T ss_pred EEEECCCHhHHHHHHhccCcCCCceEeeeeEEEecccccCCCCceEEecCCCCCCEEEEEecCCcEEEecCCCCCCCCCC
Confidence 99999999999999988644334599999999999875545444566666679999999999889999999987656667
Q ss_pred CCCCHHHHHHHHHHHhhhccCCCCCCCcccceeeeeecccCCCCCCCCCccccceEeecCCCeEEEecChhhhhHHHHHH
Q 008503 303 PEPHEDEIQFILDAISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCEDFPGLVTITGGKWTTYRSMAED 382 (563)
Q Consensus 303 ~~~~~~~~~~ll~~~~~~~~~~l~~~~v~~~~aG~rp~~~d~~~~~~~~~~~~~~i~~~~~gl~~~~Gg~~t~a~~~Ae~ 382 (563)
+.++++++++|++.++++|+..+...+|++.|+|+||+++|+....+..++++|+|....+|+++++||+||++|.|||+
T Consensus 367 ~~~t~~ei~~Ll~~a~~~~~~~l~~~~v~~~waG~RPl~~d~~~~~~~~~sr~~~i~~~~~gli~i~GGk~Tt~R~mAe~ 446 (627)
T PLN02464 367 PEPHEDEIQFILDAISDYLNVKVRRSDVLSAWSGIRPLAVDPSAKSTESISRDHVVCEEPDGLVTITGGKWTTYRSMAED 446 (627)
T ss_pred CCCCHHHHHHHHHHHHHhhCCCCChhhEEEEEEeEEeeccCCCCCcccccCCceEEEecCCCeEEEECChHHHHHHHHHH
Confidence 88999999999999999993378899999999999999987543456778899999887789999999999999999999
Q ss_pred HHHHHHHcCCCCCCCCCccccccccCCCCCCcchHHHHHHHHhhhhhccCCCccCCCCCHHHHHHHHHHhCCcHHHHHHH
Q 008503 383 AVNAAIKSGKLNPSNGCLTQNLRLVGGDGWDPSSFTVLAQQYVRMKRTYGGKFVPGVMDTAVAKHLSHAYGIMAEQVAII 462 (563)
Q Consensus 383 v~~~i~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~yg~~~~~vc~~ 462 (563)
++|.+++...+.+..+|+|...+|+|+.++.......+.+.+..++..||++.....++.+.+++|..+||+++..|+.+
T Consensus 447 ~~d~~~~~~~l~~~~~~~t~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~yG~~a~~v~~~ 526 (627)
T PLN02464 447 AVDAAIKSGKLSPTNGCVTTDLPLVGAEGYEPSLFTQLAQQYVRMKRTYGGKVVPGAMDTAAAKHLAHAYGGRADRVAEI 526 (627)
T ss_pred HHHHHHHhcccCCCCCCCcCCcccCCCCccchhhHHHHHHHhhhhhhhccccccccCCCHHHHHHHHHhhchHHHHHHhh
Confidence 99999986445456789999999999987765444445555543334455554455589999999999999999999998
Q ss_pred HhccCCCCccccCCCccHHHHHHHHHhcCCCChhHHHHhhcccccCChHHHhhhHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 008503 463 AQNEGLGKRLAHGYPFLEAEVAYCARNEYCESAVDFVARRCRLAFLDTDAAGRALPRIIEIMATEHKWDKSRRKQELQKA 542 (563)
Q Consensus 463 ~~~~~~~~~~~~c~~v~~~ei~~ai~~e~~~~~~D~l~rRtr~g~g~~~~g~~~~~~v~~~la~~l~~~~~~~~~e~~~~ 542 (563)
++++++..++++|++++++||+|||++|+++++.|+|+||||++|++.|++.+|.++|+++|+++|||+.++.++|++++
T Consensus 527 ~~~~~~~~~~~~~~~~~~aEv~~ai~~e~a~~~~D~l~RRtrl~~~~~~~~~~~~~~v~~i~a~~l~w~~~~~~~e~~~~ 606 (627)
T PLN02464 527 AQNEGLGKRLAHGYPFLEAEVAYCARHEYCESAVDFIARRTRLAFLDTDAAVRALPRVVEILAAEHGWDKSRKKQELQKA 606 (627)
T ss_pred ccccccccccccCCCcHHHHHHHHHHccCcCCHHHHHHHhccCcccChhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 87777888999999999999999999999999999999999999998899999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCccccCCCCC
Q 008503 543 KEFLETFKSSKNKQFHDGKHK 563 (563)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~~~ 563 (563)
+.++..+...+|-||+||||+
T Consensus 607 ~~~~~~~~~~~~~~~~~~~~~ 627 (627)
T PLN02464 607 KEFLETFKSSKNAQFNDGKHN 627 (627)
T ss_pred HHHHHHhhcccccccccccCC
Confidence 999999999999999999996
No 2
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=100.00 E-value=2e-78 Score=607.53 Aligned_cols=482 Identities=56% Similarity=0.929 Sum_probs=444.9
Q ss_pred CCchHHHHHHHHhhcCCCCccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccchhhHHHHhhccC
Q 008503 53 VPSRVVQESALIAANNSNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLD 132 (563)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~ 132 (563)
+|+|+..+..+. .+.+|||+|||||.+|..+|+.++-||++|.|||++||++|+|+++++++|+|.+|+++++.+++
T Consensus 52 ~PsRe~~l~~l~---~~~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGTSSkSTKLiHGGVRYLekAi~~lD 128 (680)
T KOG0042|consen 52 LPSREDLLEALK---STHEFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGTSSKSTKLIHGGVRYLEKAISNLD 128 (680)
T ss_pred CCCHHHHHHHhh---cCCcccEEEECCCccCcceeehhhcccceeEEEecccccCCccccchhhhcccHHHHHHHHHhcC
Confidence 458888888888 56779999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHhhhc------------------------------------------------------------ccC
Q 008503 133 YGQLKLVFHALEERKQA------------------------------------------------------------KDR 152 (563)
Q Consensus 133 ~~~~~~~~~~l~~~~~~------------------------------------------------------------~~~ 152 (563)
+.++++|++.|.||..+ ..+
T Consensus 129 ~~qyrlV~eaL~ER~~lle~APhLs~~lPImlPvy~wwQvpYyw~G~K~YD~vAG~k~Lk~S~~lSk~~alE~fPmL~~~ 208 (680)
T KOG0042|consen 129 YEQYRLVKEALNERANLLEIAPHLSQPLPIMLPVYKWWQVPYYWVGLKIYDLVAGSKNLKSSYFLSKKEALEIFPMLRKD 208 (680)
T ss_pred HHHHHHHHHHHHHHHHHhhcCccccCCcceeeehhhhhhhhheeecceeeeeeccccccccceeecHHHHHHhCcccccc
Confidence 99999999999998765 456
Q ss_pred CcceEEEecCceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccCcCh
Q 008503 153 SLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 232 (563)
Q Consensus 153 ~~~~~~~~~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~~s 232 (563)
++.+++.|++|+.|+.+++..++-.|..+|+.+.++.+|.++.++++ ++|.|+.++|..||++++|+|+.||||||+++
T Consensus 209 ~L~Ga~VYyDGQ~nDaRmnl~vAlTA~r~GA~v~Nh~ev~~Llkd~~-~kv~Ga~~rD~iTG~e~~I~Ak~VVNATGpfs 287 (680)
T KOG0042|consen 209 NLKGAMVYYDGQHNDARMNLAVALTAARNGATVLNHVEVVSLLKDKD-GKVIGARARDHITGKEYEIRAKVVVNATGPFS 287 (680)
T ss_pred CceeEEEEecCCCchHHHHHHHHHHHHhcchhhhhHHHHHHHhhCCC-CceeeeEEEEeecCcEEEEEEEEEEeCCCCcc
Confidence 78899999999999999999999999999999999999999999887 78999999999999999999999999999999
Q ss_pred hhhhhhhcCCCCCeeecCCceEEEecCCcCCCCcccccccCCCCcEEEEeecCCcEEeeecCCCCCCCCCCCCCHHHHHH
Q 008503 233 DSVRKLADQNVQPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWLGRTVAGTTDSDTVITLLPEPHEDEIQF 312 (563)
Q Consensus 233 ~~l~~~~g~~~~~~v~~~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~P~~g~~~iG~t~~~~~~~~~~~~~~~~~~~ 312 (563)
|.+++|...+.++.+.|+.|+|+++|..+.|.+.+++.|.++|||++|++||+|.+++|+||.+.....++.++++++++
T Consensus 288 DsIr~Mdd~~~~~i~~pSsGvHIVlP~yY~P~~mGlldP~TsDgRViFflPWqg~TIaGTTD~pt~v~~~P~PtE~dIqf 367 (680)
T KOG0042|consen 288 DSIRKMDDEDAKPICVPSSGVHIVLPGYYCPENMGLLDPKTSDGRVIFFLPWQGKTIAGTTDIPTSVTHSPTPTEDDIQF 367 (680)
T ss_pred HHHHhhcccccCceeccCCceeEEcccccCCcccccccCCCCCCcEEEEeccCCceeeccCCCCCCCCCCCCCCHHHHHH
Confidence 99999998887778999999999999999999999999999999999999999999999999997777889999999999
Q ss_pred HHHHHhhhccC--CCCCCCcccceeeeeecccCCCC-CCCCCccccceEeecCCCeEEEecChhhhhHHHHHHHHHHHHH
Q 008503 313 ILDAISDYLNV--KVRRTDVLSAWSGIRPLAMDPSA-KNTESISRDHVVCEDFPGLVTITGGKWTTYRSMAEDAVNAAIK 389 (563)
Q Consensus 313 ll~~~~~~~~~--~l~~~~v~~~~aG~rp~~~d~~~-~~~~~~~~~~~i~~~~~gl~~~~Gg~~t~a~~~Ae~v~~~i~~ 389 (563)
|+++++.|+.+ .+.+.+|...|+|+||+..|+.. .++..++|+|++..+++||++++|||||++|.|||+.+|.+.+
T Consensus 368 IL~ev~~yl~~~~~VrR~DVlsaWsGiRPLv~DP~~~~~t~sl~R~H~v~~~~~gLiTIaGGKWTTyR~MAEeTVd~aI~ 447 (680)
T KOG0042|consen 368 ILKEVQHYLSFDVEVRREDVLSAWSGIRPLVRDPKKVKDTQSLVRNHFVFVSPSGLITIAGGKWTTYRHMAEETVDAAIK 447 (680)
T ss_pred HHHHHHHhhCCCcccchhhhHHHhhCCcccccCCCccccchhhhhhceEEecCCCeEEEecCcchhHHHHHHHHHHHHHH
Confidence 99999999844 48899999999999999999842 4678899999999999999999999999999999999999999
Q ss_pred cCCCCC-CCCCccccccccCCCCCCcchHHHHHHHHhhhhhccCCCccCCCCCHHHHHHHHHHhCCcHHHHHHHHhccCC
Q 008503 390 SGKLNP-SNGCLTQNLRLVGGDGWDPSSFTVLAQQYVRMKRTYGGKFVPGVMDTAVAKHLSHAYGIMAEQVAIIAQNEGL 468 (563)
Q Consensus 390 ~~~~~~-~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~yg~~~~~vc~~~~~~~~ 468 (563)
..++.+ ..||.|..+.|.|+.+|.+.....|.+.|+ ++.+.++||...||+++..||.++.....
T Consensus 448 ~~~lk~~~~~cvT~~l~l~Ga~~wt~~~~~~LvQdyg--------------~e~~vA~hLs~tYG~rA~~Va~~~k~tgk 513 (680)
T KOG0042|consen 448 AGDLKPARKPCVTKKLKLEGAEGWTPNMYIRLVQDYG--------------MESDVAQHLSQTYGDRAFRVAKMAKSTGK 513 (680)
T ss_pred hCCCCCCCCcccccceEEeccCCCcHHHHHHHHHHhC--------------CcHHHHHHHHHhhcchHHHHHHHHHhcCC
Confidence 988877 567999999999999999998889998888 99999999999999999999999987754
Q ss_pred -----CCccccCCCccHHHHHHHHHhcCCCChhHHHHhh-----------------------------------------
Q 008503 469 -----GKRLAHGYPFLEAEVAYCARNEYCESAVDFVARR----------------------------------------- 502 (563)
Q Consensus 469 -----~~~~~~c~~v~~~ei~~ai~~e~~~~~~D~l~rR----------------------------------------- 502 (563)
+.+|++..+++++||+|++.+|++++..|++.||
T Consensus 514 k~Pivg~rl~~~fpyleAEv~y~v~~e~a~~~~Dv~arr~r~~~~q~~~ar~fl~~~mg~~~~~~~~~~~~i~~~~~~~~ 593 (680)
T KOG0042|consen 514 KWPIVGKRLHPEFPYLEAEVRYGVVREYACTPVDVIARRLREKKKQIEYARTFLNSEMGLSKESTSQMSIPIKLTPEDFL 593 (680)
T ss_pred cCccccccccCCCCchHHHHHhhhhHhhhccHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccccccccccCHHHHH
Confidence 5789999999999999999999999999999999
Q ss_pred ---cccccCCh-HHHhhhHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHhcCC
Q 008503 503 ---CRLAFLDT-DAAGRALPRIIEIMATEH-KWDKSRRKQELQKAKEFLETFKSS 552 (563)
Q Consensus 503 ---tr~g~g~~-~~g~~~~~~v~~~la~~l-~~~~~~~~~e~~~~~~~~~~~~~~ 552 (563)
+|.++.+. .++-.|...|.+.|.++. +||.+..++++.++..++..+...
T Consensus 594 ~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l 648 (680)
T KOG0042|consen 594 RRKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVEL 648 (680)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeH
Confidence 55666665 678889999999999999 999999999999887776554433
No 3
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=100.00 E-value=6.5e-69 Score=558.40 Aligned_cols=453 Identities=40% Similarity=0.601 Sum_probs=391.2
Q ss_pred CCCccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhhh
Q 008503 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQ 148 (563)
Q Consensus 69 ~~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 148 (563)
..++||+||||||+|+.+|+.|+.+|++|+|+|++|+++|+|++|++++|+|.+|+++. ++.++.|.+.|+..
T Consensus 10 ~~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsGTSsrstkLiHGGlRYl~~~-------e~~lvrEal~Er~v 82 (532)
T COG0578 10 MEEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGTSSRSTKLIHGGLRYLEQY-------EFSLVREALAEREV 82 (532)
T ss_pred ccCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccCcccCccccCccchhhhhhhc-------chHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999863 55566666666543
Q ss_pred c--------------------------------------------------------------ccCCcceEEEecCceec
Q 008503 149 A--------------------------------------------------------------KDRSLKGAVVYYDGQMN 166 (563)
Q Consensus 149 ~--------------------------------------------------------------~~~~~~~~~~~~~~~~~ 166 (563)
+ ..+.+.+++.|.++++|
T Consensus 83 L~~~APH~v~p~~~~lp~~~~~~~~~~~~~gl~lyd~lag~~~~~p~~~~~~~~~~~~~~P~l~~~~l~ga~~y~D~~vd 162 (532)
T COG0578 83 LLRIAPHLVEPLPFLLPHLPGLRDAWLIRAGLFLYDHLAGIRKLLPASRVLDPKEALPLEPALKKDGLKGAFRYPDGVVD 162 (532)
T ss_pred HHHhCccccccCcCeEeccCCcccchHHHHHHHHHHHhhcccccCCcceecchhhhhhcCcccchhhccceEEEccceec
Confidence 3 23344558899999999
Q ss_pred hHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccCcChhhhhhhhcCCCC--
Q 008503 167 DSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQ-- 244 (563)
Q Consensus 167 ~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~~s~~l~~~~g~~~~-- 244 (563)
+.+++..++..|.++|++++++++|+.+.+++ + |+||.++|..||+..+|+|+.||||||+|++++.++.+...+
T Consensus 163 daRLv~~~a~~A~~~Ga~il~~~~v~~~~re~--~-v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d~i~~~~~~~~~~~ 239 (532)
T COG0578 163 DARLVAANARDAAEHGAEILTYTRVESLRREG--G-VWGVEVEDRETGETYEIRARAVVNAAGPWVDEILEMAGLEQSPH 239 (532)
T ss_pred hHHHHHHHHHHHHhcccchhhcceeeeeeecC--C-EEEEEEEecCCCcEEEEEcCEEEECCCccHHHHHHhhcccCCCC
Confidence 99999999999999999999999999999985 5 999999998899999999999999999999999999865532
Q ss_pred CeeecCCceEEEecCCcCCCCcccccccCCCCcEEEEeecCCcEEeeecCCCCC-CCCCCCCCHHHHHHHHHHHhhhccC
Q 008503 245 PMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWLGRTVAGTTDSDTV-ITLLPEPHEDEIQFILDAISDYLNV 323 (563)
Q Consensus 245 ~~v~~~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~P~~g~~~iG~t~~~~~-~~~~~~~~~~~~~~ll~~~~~~~~~ 323 (563)
..++|+||+|+++++ ..+....++++...|++++|++||++..++|+|+.+.+ +++++.++++++++|++.+++++.+
T Consensus 240 ~~vr~skGsHlVv~~-~~~~~~a~~~~~~~d~r~~f~iP~~~~~liGTTD~~~~~~~~~~~~~~eEidyll~~~~~~~~~ 318 (532)
T COG0578 240 IGVRPSKGSHLVVDK-KFPINQAVINRCRKDGRIVFAIPYEGKTLIGTTDTDYDGDPEDPRITEEEIDYLLDAVNRYLAP 318 (532)
T ss_pred ccceeccceEEEecc-cCCCCceEEeecCCCCceEEEecCCCCEEeeccccccCCCcccCCCCHHHHHHHHHHHHhhhhc
Confidence 259999999999999 56666677776455999999999999999999999844 5889999999999999999977767
Q ss_pred CCCCCCcccceeeeeecccCCCCCCCCCccccceEeecC--CCeEEEecChhhhhHHHHHHHHHHHHHcCCCCCCCCCcc
Q 008503 324 KVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCEDF--PGLVTITGGKWTTYRSMAEDAVNAAIKSGKLNPSNGCLT 401 (563)
Q Consensus 324 ~l~~~~v~~~~aG~rp~~~d~~~~~~~~~~~~~~i~~~~--~gl~~~~Gg~~t~a~~~Ae~v~~~i~~~~~~~~~~~~~~ 401 (563)
++...+|+++|+|+||+..++. .++++++|+|.+..+. +|+++++|||||++|.|||++++.+++.++.. .+|.|
T Consensus 319 ~l~~~dI~~syaGVRPL~~~~~-~~~~~isR~~~l~~~~~~~glltv~GGKlTTyR~maE~a~d~v~~~lg~~--~~~~t 395 (532)
T COG0578 319 PLTREDILSTYAGVRPLVDDGD-DDTSAISRDHVLFDHAELAGLLTVAGGKLTTYRKMAEDALDAVCEKLGIR--PPCTT 395 (532)
T ss_pred cCChhheeeeeeeeeeccCCCC-CchhhccCceEEEecCCCCCeEEEecchhHHhHHHHHHHHHHHHHhcCCC--CCccc
Confidence 8999999999999999987654 5789999999999877 89999999999999999999999999998754 88999
Q ss_pred ccccccCCCCCCcchHHHHHHHHhhhhhccCCCccCCCCCHHHHHHHHHHhCCcHHHHHHHHhcc-CCCCccccCCCccH
Q 008503 402 QNLRLVGGDGWDPSSFTVLAQQYVRMKRTYGGKFVPGVMDTAVAKHLSHAYGIMAEQVAIIAQNE-GLGKRLAHGYPFLE 480 (563)
Q Consensus 402 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~yg~~~~~vc~~~~~~-~~~~~~~~c~~v~~ 480 (563)
...||+|+..... ......... .....++...++|+...||+++..||.++... ++.+.. ....++
T Consensus 396 ~~~~LpGg~~~~~--~~~~~~~~~---------~~~~~l~~~~~r~l~~~YGs~~~~l~~~~~~~~~~~~~~--~~~~~~ 462 (532)
T COG0578 396 ADLPLPGGDENAA--LAELAAALG---------AAYPGLPSALARHLARLYGSRAELLLALAAVLADLGEHA--LSDLYE 462 (532)
T ss_pred CCCCCCCCCcchh--hHHHHHHhc---------cccCCCcHHHHHHHHHhhCcCHHHHHHHhhhcccccccc--CCcchH
Confidence 9999999873221 111111111 12234899999999999999999999987643 554433 566799
Q ss_pred HHHHHHHHhcCCCChhHHHHhhcccccCChHHHhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Q 008503 481 AEVAYCARNEYCESAVDFVARRCRLAFLDTDAAGRALPRIIEIMATEHKWDKSRRKQELQKAKEFLETF 549 (563)
Q Consensus 481 ~ei~~ai~~e~~~~~~D~l~rRtr~g~g~~~~g~~~~~~v~~~la~~l~~~~~~~~~e~~~~~~~~~~~ 549 (563)
+|++|++++||+.+..|+|.|||+.+|....+ ..|.++++++|+.+++|+..+...+.+.+.+.+..+
T Consensus 463 ael~y~~~~E~a~~~~D~l~RRt~~~l~~~~~-~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 530 (532)
T COG0578 463 AELRYLVRHEMALTLEDILARRTKLGLLLADV-LAAADAVAAVMAEELGWSAERPAAEGQALREALFTY 530 (532)
T ss_pred HHHHHHHHhhhcCCHHHHHHHHHHhhhccccc-hhhHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHhh
Confidence 99999999999999999999999999987767 899999999999999999999999999998877654
No 4
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=100.00 E-value=9.5e-62 Score=526.54 Aligned_cols=443 Identities=27% Similarity=0.366 Sum_probs=351.7
Q ss_pred CCCccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccchhhHHHH-------------hhcc----
Q 008503 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKA-------------VFNL---- 131 (563)
Q Consensus 69 ~~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~-------------~~~~---- 131 (563)
..+|||+|||||++|+++|++|+++|++|+||||+++++|+|++|+|++|+|.+|.... +.++
T Consensus 4 ~~~~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~d~~~GaS~~~~gllh~g~ry~~~~~~~~~~~~~e~~~l~~~a~~~ 83 (546)
T PRK11101 4 SQETDVIIIGGGATGAGIARDCALRGLRCILVERHDIATGATGRNHGLLHSGARYAVTDAESARECISENQILKRIARHC 83 (546)
T ss_pred CccccEEEECcCHHHHHHHHHHHHcCCeEEEEECCCCCCCcccccccceeccchhcccCHHHHHHHHHHHHHHHHhchHh
Confidence 45699999999999999999999999999999999999999999999999998874210 0100
Q ss_pred -----------CcccHHH---HHHHHHHhhhc---------------ccCCcceEEEecCceechHHHHHHHHHHHHHCC
Q 008503 132 -----------DYGQLKL---VFHALEERKQA---------------KDRSLKGAVVYYDGQMNDSRLNVGLALTAALAG 182 (563)
Q Consensus 132 -----------~~~~~~~---~~~~l~~~~~~---------------~~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~G 182 (563)
+..+... ..+...+.+.. ..+.+.+++.+.++++||.+++..++..|.++|
T Consensus 84 ~~~~g~l~~~~~~~~~~~~~~~~~~~~~~Gi~~~~l~~~e~~~~eP~l~~~~~ga~~~~dg~vdp~rl~~al~~~A~~~G 163 (546)
T PRK11101 84 VEPTDGLFITLPEDDLAFQATFIRACEEAGIEAEAIDPQQALILEPAVNPALIGAVKVPDGTVDPFRLTAANMLDAKEHG 163 (546)
T ss_pred hcccCCceEEeccccHHHHHHHHHHHHHcCCCcEEECHHHHHHhCCCcCccceEEEEecCcEECHHHHHHHHHHHHHhCC
Confidence 0011111 11122222211 234456777777899999999999999999999
Q ss_pred CEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccCcChhhhhhhhcCCCCCeeecCCceEEEecCCcC
Q 008503 183 AAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQPMICPSSGVHIVLPDYYS 262 (563)
Q Consensus 183 ~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~~s~~l~~~~g~~~~~~v~~~~G~~~~~~~~~~ 262 (563)
++++++++|+++..++ +++++|++.+..+++..+|+|+.||||+|+|++.+.++.+.+. .+.|.||++++++....
T Consensus 164 a~i~~~t~V~~i~~~~--~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa~~l~~~~g~~~--~i~p~kG~~lv~~~~~~ 239 (546)
T PRK11101 164 AQILTYHEVTGLIREG--DTVCGVRVRDHLTGETQEIHAPVVVNAAGIWGQHIAEYADLRI--RMFPAKGSLLIMDHRIN 239 (546)
T ss_pred CEEEeccEEEEEEEcC--CeEEEEEEEEcCCCcEEEEECCEEEECCChhHHHHHHhcCCCC--ceeecceEEEEECCccC
Confidence 9999999999998875 6899999887566666789999999999999999999887653 38999999999976332
Q ss_pred CCCccccc--ccCCCCcEEEEeecCCcEEeeecCCCC--CCCCCCCCCHHHHHHHHHHHhhhccCCCCCCCcccceeeee
Q 008503 263 PEGMGLIV--PKTKDGRVVFMLPWLGRTVAGTTDSDT--VITLLPEPHEDEIQFILDAISDYLNVKVRRTDVLSAWSGIR 338 (563)
Q Consensus 263 ~~~~~~~~--~~~~~g~~~~~~P~~g~~~iG~t~~~~--~~~~~~~~~~~~~~~ll~~~~~~~~~~l~~~~v~~~~aG~r 338 (563)
. .++. +...++. +++|+++.+++|+|+++. +++++..++.+++++|++.+.+++ |.+...+|++.|+|+|
T Consensus 240 ~---~vi~~~~~~~~~~--~~vp~~~~~liGtT~~~~~~~~~~~~~~t~~~i~~Ll~~~~~l~-P~l~~~~i~~~~aGvR 313 (546)
T PRK11101 240 N---HVINRCRKPADAD--ILVPGDTISLIGTTSTRIDYDQIDDNRVTAEEVDILLREGEKLA-PVMAKTRILRAYAGVR 313 (546)
T ss_pred c---eeEeccCCCCCCC--EEEecCCEEEEeeCCCCccCCCcCCCCCCHHHHHHHHHHHHHhC-CCCCccCEEEEEEEec
Confidence 1 1221 1122343 467888889999998763 345567899999999999999998 7899999999999999
Q ss_pred ecccCCCCCCCCCccccceEeec-----CCCeEEEecChhhhhHHHHHHHHHHHHHcCCCCCCCCCccccccccCCCCCC
Q 008503 339 PLAMDPSAKNTESISRDHVVCED-----FPGLVTITGGKWTTYRSMAEDAVNAAIKSGKLNPSNGCLTQNLRLVGGDGWD 413 (563)
Q Consensus 339 p~~~d~~~~~~~~~~~~~~i~~~-----~~gl~~~~Gg~~t~a~~~Ae~v~~~i~~~~~~~~~~~~~~~~~~l~g~~~~~ 413 (563)
|+..+....++.+++|+|.|..+ .+|+++++||+||++|+|||+++|.+++.++ ...+|+|...|++|+..+.
T Consensus 314 Pl~~~~~~~~~~~~sR~~~ii~~~~~~g~~gli~i~GGkltt~r~~Ae~v~d~v~~~l~--~~~~~~t~~~~l~g~~~~~ 391 (546)
T PRK11101 314 PLVASDDDPSGRNVSRGIVLLDHAERDGLDGFITITGGKLMTYRLMAEWATDAVCRKLG--NTRPCTTADTPLPGSQEPA 391 (546)
T ss_pred cCCCCCCCCcccccCCCeEEeecccccCCCCeEEEECChHHHHHHHHHHHHHHHHHhcC--CCCCCcCCCcccCCccccc
Confidence 99643222346778898876542 3799999999999999999999999999865 3568999999999986543
Q ss_pred cchHHHHHHHHhhhhhccCCCccCCCCCHHHHHHHHHHhCCcHHHHHHHHhccCCCCccccCCCccHHHHHHHHHhcCCC
Q 008503 414 PSSFTVLAQQYVRMKRTYGGKFVPGVMDTAVAKHLSHAYGIMAEQVAIIAQNEGLGKRLAHGYPFLEAEVAYCARNEYCE 493 (563)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~yg~~~~~vc~~~~~~~~~~~~~~c~~v~~~ei~~ai~~e~~~ 493 (563)
.. .+...+. ++....+++..+||+++..|+..... ...-+++||+||++||+|||++|++.
T Consensus 392 ~~---~~~~~~~--------------~~~~~~~~~~~~~g~~a~~~~~~~~~--~~~lic~ce~v~~aEv~~ai~~e~a~ 452 (546)
T PRK11101 392 EV---TLRKVIS--------------LPAPLRGSAVYRHGDRAPAWLSEGRL--DRSLVCECEAVTAGEVRYAVENLNVN 452 (546)
T ss_pred hh---hHHHhcC--------------CCHHHHHHHHHhcCccHHHHHhhccC--CCceecCCCCccHHHHHHHHHhcCCC
Confidence 21 1112222 68888999999999999888875332 22347789999999999999999999
Q ss_pred ChhHHHHhhcccccCChHHHhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 008503 494 SAVDFVARRCRLAFLDTDAAGRALPRIIEIMATEHKWDKSRRKQELQKAKE 544 (563)
Q Consensus 494 ~~~D~l~rRtr~g~g~~~~g~~~~~~v~~~la~~l~~~~~~~~~e~~~~~~ 544 (563)
++.| |+||||+||| +|||.+|.++++++|+++.+|++++...+++++.+
T Consensus 453 ~l~d-l~RRtr~gmg-~cqg~~c~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 501 (546)
T PRK11101 453 NLLD-LRRRTRVGMG-TCQGELCACRAAGLLQRFNVTTPAQSIEQLSTFLN 501 (546)
T ss_pred CHHH-HHHHHhCCcC-cchhhHHHHHHHHHHHHhcCCChhHHHHHHHHHHH
Confidence 9999 9999999998 79999999999999999999999999999887643
No 5
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=100.00 E-value=4e-59 Score=502.27 Aligned_cols=440 Identities=32% Similarity=0.440 Sum_probs=341.1
Q ss_pred CCccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccchhhHHHHh--------------hc-----
Q 008503 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAV--------------FN----- 130 (563)
Q Consensus 70 ~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~--------------~~----- 130 (563)
.+|||+|||||++|+++|++|+++|++|+||||+++++|+|++|++++|+|++|+.+.. ..
T Consensus 5 ~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~~~GtS~~ss~lihgG~ryl~~~~~~l~~e~l~er~~l~~~~p~~ 84 (508)
T PRK12266 5 ETYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDLASATSSASTKLIHGGLRYLEHYEFRLVREALAEREVLLRMAPHI 84 (508)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccccccccccchHHHhhhccHHHHHHHHHHHHHHHHhCCCc
Confidence 46999999999999999999999999999999999999999999999999999865410 00
Q ss_pred ---cCc----c-----cH----H-HHHHHHHHhhhc----------------ccCCcceEEEecCceechHHHHHHHHHH
Q 008503 131 ---LDY----G-----QL----K-LVFHALEERKQA----------------KDRSLKGAVVYYDGQMNDSRLNVGLALT 177 (563)
Q Consensus 131 ---~~~----~-----~~----~-~~~~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 177 (563)
+.+ . .. . .+++.+.....+ ..+.+.+++.|.++++||.+++..+++.
T Consensus 85 ~~~l~~~~~~~~~~~~~~~~~~gl~lyd~~~~~~~l~~~~~~~~~~~~~~~~L~~~l~g~~~~~dg~vd~~rl~~~l~~~ 164 (508)
T PRK12266 85 IWPMRFVLPHRPHLRPAWMIRAGLFLYDHLGKRKSLPGSRGLDLGRDPAGSPLKPEITRGFEYSDCWVDDARLVVLNARD 164 (508)
T ss_pred ccccceEEEecccccchHHHHHHHHHHHhhcCCCCCChhhhhchhhcccCCCcchhhcEEEEEcCcccCHHHHHHHHHHH
Confidence 000 0 00 0 011111100000 1234567788999999999999999999
Q ss_pred HHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccCcChhhhhhh-hcCCCCCeeecCCceEEE
Q 008503 178 AALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKL-ADQNVQPMICPSSGVHIV 256 (563)
Q Consensus 178 a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~~s~~l~~~-~g~~~~~~v~~~~G~~~~ 256 (563)
|.++|++++++++|+++..++ ..++|.+.+..+|+..+|+|+.||||+|+|++.+... .|...+..+.|.+|+|++
T Consensus 165 A~~~Ga~i~~~~~V~~i~~~~---~~~~v~~~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~~~g~~~~~~i~p~kG~~lv 241 (508)
T PRK12266 165 AAERGAEILTRTRVVSARREN---GLWHVTLEDTATGKRYTVRARALVNAAGPWVKQFLDDGLGLPSPYGIRLVKGSHIV 241 (508)
T ss_pred HHHcCCEEEcCcEEEEEEEeC---CEEEEEEEEcCCCCEEEEEcCEEEECCCccHHHHHhhccCCCCCcceeeeeeEEEE
Confidence 999999999999999998764 3457777765566667899999999999999999764 465434459999999999
Q ss_pred ecCCcCCCCcccccccCCCCcEEEEeec-CCcEEeeecCCC-CCCCCCCCCCHHHHHHHHHHHhhhccCCCCCCCcccce
Q 008503 257 LPDYYSPEGMGLIVPKTKDGRVVFMLPW-LGRTVAGTTDSD-TVITLLPEPHEDEIQFILDAISDYLNVKVRRTDVLSAW 334 (563)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~g~~~~~~P~-~g~~~iG~t~~~-~~~~~~~~~~~~~~~~ll~~~~~~~~~~l~~~~v~~~~ 334 (563)
++....+ ...++++ ..+|+++|++|| ++..++|+|+.+ ..++++..++.+++++|++.+++++++.+...+|++.|
T Consensus 242 l~~~~~~-~~~~~~~-~~dgr~v~~~P~~~g~~liGttd~~~~~~~~~~~~~~~~i~~Ll~~~~~~~p~~l~~~~ii~~w 319 (508)
T PRK12266 242 VPRLFDH-DQAYILQ-NPDGRIVFAIPYEDDFTLIGTTDVEYKGDPAKVAISEEEIDYLCKVVNRYFKKQLTPADVVWTY 319 (508)
T ss_pred ECCcCCC-CcEEEEe-CCCCCEEEEEEeCCCeEEEecCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCHHHEEEEe
Confidence 9764432 2223334 578999999999 579999999876 34566778999999999999999995478999999999
Q ss_pred eeeeecccCCCCCCCCCccccceEeec----CCCeEEEecChhhhhHHHHHHHHHHHHHcCCCCCCCCCccccccccCCC
Q 008503 335 SGIRPLAMDPSAKNTESISRDHVVCED----FPGLVTITGGKWTTYRSMAEDAVNAAIKSGKLNPSNGCLTQNLRLVGGD 410 (563)
Q Consensus 335 aG~rp~~~d~~~~~~~~~~~~~~i~~~----~~gl~~~~Gg~~t~a~~~Ae~v~~~i~~~~~~~~~~~~~~~~~~l~g~~ 410 (563)
+|+||+++|+. ..+..++|+|+|..+ .+|+++++|||||++|.|||++++.+++.++ ...+|+|...+|+|+.
T Consensus 320 aG~RPl~~d~~-~~~~~~sr~~~i~~~~~~g~~gli~v~Ggk~Tt~r~mAe~~~~~~~~~l~--~~~~~~t~~~~l~g~~ 396 (508)
T PRK12266 320 SGVRPLCDDES-DSAQAITRDYTLELDDENGGAPLLSVFGGKITTYRKLAEHALEKLAPYLP--QMGPAWTAGAPLPGGD 396 (508)
T ss_pred eeeEeeCCCCC-CCcccCCcceEEEecccCCCCCeEEEEcChHHHHHHHHHHHHHHHHHhcC--CCCCCCcCCcccCCCC
Confidence 99999998864 457788999999865 4789999999999999999999999999876 4568999999999986
Q ss_pred CCCcchHHHHHHHHhhhhhccCCCccCCCCCHHHHHHHHHHhCCcHHHHHHHHhcc-CCCCccccCCCccHHHHHHHHHh
Q 008503 411 GWDPSSFTVLAQQYVRMKRTYGGKFVPGVMDTAVAKHLSHAYGIMAEQVAIIAQNE-GLGKRLAHGYPFLEAEVAYCARN 489 (563)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~yg~~~~~vc~~~~~~-~~~~~~~~c~~v~~~ei~~ai~~ 489 (563)
.+...+......... ....++.+.++||..+||+++..|+.++++. ++...+ |++++++||+|++++
T Consensus 397 ~~~~~~~~~~~~~~~----------~~~~~~~~~~~~l~~~yG~~a~~v~~~~~~~~~~~~~~--~~~~~~aev~~~~~~ 464 (508)
T PRK12266 397 FPGDRFDALAAALRR----------RYPWLPEALARRLARAYGTRAERLLGGATSLADLGEHF--GHGLYEAEVDYLVEH 464 (508)
T ss_pred CCcccHHHHHHHHHH----------hcCCcCHHHHHHHHHhhhhHHHHHHHhcccchhhcccc--CCCccHHHHHHHHHh
Confidence 432222212111111 0011688999999999999999999987653 444444 889999999999999
Q ss_pred cCCCChhHHHHhhcccccCChHHHhhhHHHHHHHHHHHcCCCH
Q 008503 490 EYCESAVDFVARRCRLAFLDTDAAGRALPRIIEIMATEHKWDK 532 (563)
Q Consensus 490 e~~~~~~D~l~rRtr~g~g~~~~g~~~~~~v~~~la~~l~~~~ 532 (563)
||++++.|+|.||||++|....++ ...+..+.+.+++...
T Consensus 465 e~a~~~~D~l~RRt~l~~~~~~~~---~~~~~~~~~~~~~~~~ 504 (508)
T PRK12266 465 EWARTAEDILWRRTKLGLRLDAEQ---QARLEAWLAARRAAAA 504 (508)
T ss_pred hCCCCHHHHHHHhcccccccCHHH---HHHHHHHHHHhhcccc
Confidence 999999999999999999744443 3445567777776543
No 6
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=2.6e-57 Score=488.75 Aligned_cols=423 Identities=33% Similarity=0.453 Sum_probs=326.6
Q ss_pred CCCccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccchhhHHHHhhc------------------
Q 008503 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFN------------------ 130 (563)
Q Consensus 69 ~~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~------------------ 130 (563)
+.+|||+|||||++|+++|++|+++|++|+||||+++++|+|++|++++|+|.+|+......
T Consensus 4 ~~~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d~~~GtS~~ss~lihgg~ryl~~~~~~l~~e~~~e~~~l~~~ap~ 83 (502)
T PRK13369 4 PETYDLFVIGGGINGAGIARDAAGRGLKVLLCEKDDLAQGTSSRSGKLVHGGLRYLEYYEFRLVREALIEREVLLAAAPH 83 (502)
T ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCCCCchhhhhhHHHHHHHHHhccHHHHHHHHHHHHHHHHhCCc
Confidence 45699999999999999999999999999999999999999999999999999886531100
Q ss_pred ----c----Cc--ccH-HH-------HHHHHHHhhhc----------------ccCCcceEEEecCceechHHHHHHHHH
Q 008503 131 ----L----DY--GQL-KL-------VFHALEERKQA----------------KDRSLKGAVVYYDGQMNDSRLNVGLAL 176 (563)
Q Consensus 131 ----~----~~--~~~-~~-------~~~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~~l~~~l~~ 176 (563)
+ .. ... .+ +++.+...... ..+.+.+++.+.+++++|.+++..++.
T Consensus 84 l~~~~~~~~~~~~~~~~~~~~~~g~~ly~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~a~~~~dg~vd~~rl~~~l~~ 163 (502)
T PRK13369 84 IIWPMRFVLPHSPEDRPAWLVRLGLFLYDHLGGRKRLPGTRTLDLRRDPEGAPLKPEYTKGFEYSDCWVDDARLVVLNAL 163 (502)
T ss_pred cccccceEEecccccccHHHHHHHHHHHHhccCCCCCCcceEechhhccccCCchHhcCEEEEEcCeeecHHHHHHHHHH
Confidence 0 00 000 00 00110000000 112345677889999999999999999
Q ss_pred HHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccCcChhhhhh-hhcCCCCCeeecCCceEE
Q 008503 177 TAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRK-LADQNVQPMICPSSGVHI 255 (563)
Q Consensus 177 ~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~~s~~l~~-~~g~~~~~~v~~~~G~~~ 255 (563)
.+.++|++++++++|+++..++ ..++|.+.+.. ++..+++|+.||||+|+|++.+.+ +.|......+.|.||+|+
T Consensus 164 ~a~~~Ga~i~~~~~V~~i~~~~---~~~~v~~~~~~-g~~~~i~a~~VVnAaG~wa~~l~~~~~g~~~~~~v~p~kG~~l 239 (502)
T PRK13369 164 DAAERGATILTRTRCVSARREG---GLWRVETRDAD-GETRTVRARALVNAAGPWVTDVIHRVAGSNSSRNVRLVKGSHI 239 (502)
T ss_pred HHHHCCCEEecCcEEEEEEEcC---CEEEEEEEeCC-CCEEEEEecEEEECCCccHHHHHhhccCCCCCcceEEeeEEEE
Confidence 9999999999999999998764 35677776633 666789999999999999999977 446543345999999999
Q ss_pred EecCCcCCCCcccccccCCCCcEEEEeecC-CcEEeeecCCCC-CCCCCCCCCHHHHHHHHHHHhhhccCCCCCCCcccc
Q 008503 256 VLPDYYSPEGMGLIVPKTKDGRVVFMLPWL-GRTVAGTTDSDT-VITLLPEPHEDEIQFILDAISDYLNVKVRRTDVLSA 333 (563)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~g~~~~~~P~~-g~~~iG~t~~~~-~~~~~~~~~~~~~~~ll~~~~~~~~~~l~~~~v~~~ 333 (563)
+++....+. ..++++ ..+++++|++||. +.+++|+|+.+. +++++..++.+++++|++.++++|++.+...+|++.
T Consensus 240 v~~~~~~~~-~~~~~~-~~dgr~~~i~P~~~~~~liGtTd~~~~~~~~~~~~~~~~i~~ll~~~~~~~~~~l~~~~i~~~ 317 (502)
T PRK13369 240 VVPKFWDGA-QAYLFQ-NPDKRVIFANPYEGDFTLIGTTDIAYEGDPEDVAADEEEIDYLLDAANRYFKEKLRREDVVHS 317 (502)
T ss_pred EeCCccCCC-ceEEEe-CCCCeEEEEEEecCCEEEEEecCccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCCHhHEEEE
Confidence 997644322 223333 5688999999996 678899998763 456678899999999999999999547999999999
Q ss_pred eeeeeecccCCCCCCCCCccccceEeec----CCCeEEEecChhhhhHHHHHHHHHHHHHcCCCCCCCCCccccccccCC
Q 008503 334 WSGIRPLAMDPSAKNTESISRDHVVCED----FPGLVTITGGKWTTYRSMAEDAVNAAIKSGKLNPSNGCLTQNLRLVGG 409 (563)
Q Consensus 334 ~aG~rp~~~d~~~~~~~~~~~~~~i~~~----~~gl~~~~Gg~~t~a~~~Ae~v~~~i~~~~~~~~~~~~~~~~~~l~g~ 409 (563)
|+|+||+++|+. +++..++|+|.|..+ .+|+++++|||||++|.|||++++.+.+.++ ...+|+|...+|+|+
T Consensus 318 waGlRPl~~d~~-~~~~~~sR~~~i~~~~~~g~~gli~i~Ggk~Tt~r~~Ae~v~d~~~~~l~--~~~~~~t~~~~l~g~ 394 (502)
T PRK13369 318 FSGVRPLFDDGA-GNPSAVTRDYVFDLDAETGGAPLLSVFGGKITTFRKLAEHALERLKPFFP--QMGGDWTAGAPLPGG 394 (502)
T ss_pred eeceEEcCCCCC-CCcccCCcceEEeeccccCCCCeEEEeCChHhhHHHHHHHHHHHHHHhcC--CCCCCCCCCcccCCc
Confidence 999999998764 556778899999764 3789999999999999999999999999866 456899999999998
Q ss_pred CCCCcchHHHHHHHHhhhhhccCCCccCCCCCHHHHHHHHHHhCCcHHHHHHHHhcc-CCCCccccCCCccHHHHHHHHH
Q 008503 410 DGWDPSSFTVLAQQYVRMKRTYGGKFVPGVMDTAVAKHLSHAYGIMAEQVAIIAQNE-GLGKRLAHGYPFLEAEVAYCAR 488 (563)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~yg~~~~~vc~~~~~~-~~~~~~~~c~~v~~~ei~~ai~ 488 (563)
......+...+..... ....++.+.+++|.++||+++..|+.+++.+ .+...+ +++++++||.|+++
T Consensus 395 ~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~l~~~yG~~a~~v~~~~~~~~~~~~~~--~~~~~~aev~~~~~ 462 (502)
T PRK13369 395 DIANADFDTFADDLRD----------RYPWLPRPLAHRYARLYGTRAKDVLGGARSLEDLGRHF--GGGLTEAEVRYLVA 462 (502)
T ss_pred CCCccCHHHHHHHHHh----------hcCCCCHHHHHHHHHhhhhHHHHHHHhcccchhhhccc--CCCccHHHHHHHHH
Confidence 6432222222221111 0012688999999999999999999987643 233322 35789999999999
Q ss_pred hcCCCChhHHHHhhcccccCChHH
Q 008503 489 NEYCESAVDFVARRCRLAFLDTDA 512 (563)
Q Consensus 489 ~e~~~~~~D~l~rRtr~g~g~~~~ 512 (563)
+||++++.|+|.||||++|....+
T Consensus 463 ~e~a~~~~D~l~RRt~l~~~~~~~ 486 (502)
T PRK13369 463 REWARTAEDILWRRTKLGLHLSAA 486 (502)
T ss_pred hhcCCCHHHHHHHhhhcccccCHH
Confidence 999999999999999999973334
No 7
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=100.00 E-value=8.6e-57 Score=487.06 Aligned_cols=427 Identities=26% Similarity=0.334 Sum_probs=339.2
Q ss_pred HHHHHHCCCcEEEEeccCCCCCCccCCCCccccchhhHHHH-------------hhcc---------------CcccHHH
Q 008503 87 ALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKA-------------VFNL---------------DYGQLKL 138 (563)
Q Consensus 87 A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~-------------~~~~---------------~~~~~~~ 138 (563)
|++|+++|++|+||||++++.|+|++|+|++|+|++|+... +.++ +..+...
T Consensus 1 ArdLa~rGl~V~llEk~d~~~GaS~rnsglih~G~ry~~~~~~~a~~~~~~~~~l~~~a~~~~~~~g~L~va~~~~~~~~ 80 (516)
T TIGR03377 1 MRDLALRGLRCILLEQGDLAHGTTGRNHGLLHSGARYAVTDQESARECIEENRILKRIARHCVEDTGGLFITLPEDDLEF 80 (516)
T ss_pred ChhHHHCCCCEEEEeCCCcccccccccccCcCcchhhhccCHHHHHHHHHHHHHHHHhChHhccCCCceEEecCcccHHH
Confidence 68999999999999999999999999999999998875210 0111 0011111
Q ss_pred ---HHHHHHHhhhc---------------ccCCcceEEEecCceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCC
Q 008503 139 ---VFHALEERKQA---------------KDRSLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEAS 200 (563)
Q Consensus 139 ---~~~~l~~~~~~---------------~~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~ 200 (563)
..+...+.+.. .++.+.+++.+.++++||.+++..+++.|.++|++++++++|+++..++
T Consensus 81 ~~~~~~~~~~~gi~~~~l~~~e~~~~~P~l~~~~~ga~~~~dg~vdp~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~~-- 158 (516)
T TIGR03377 81 QKQFLAACREAGIPAEEIDPAEALRLEPNLNPDLIGAVKVPDGTVDPFRLVAANVLDAQEHGARIFTYTKVTGLIREG-- 158 (516)
T ss_pred HHHHHHHHHHCCCCceEECHHHHHHHCCCCChhheEEEEeCCcEECHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEEC--
Confidence 11112221110 2334567777779999999999999999999999999999999999865
Q ss_pred CcEEEEEEEECCCCcEEEEEeCeEEEccCcChhhhhhhhcCCCCCeeecCCceEEEecCCcCCCCcccccccCCCCcEEE
Q 008503 201 NRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVF 280 (563)
Q Consensus 201 g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~~s~~l~~~~g~~~~~~v~~~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 280 (563)
+++++|++.+..+++..+|+|+.||||+|+|++.+.++.|.+. .+.|.||++++++....+..... ++...++. |
T Consensus 159 ~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~~g~~~--~i~p~kG~~lv~~~~~~~~~~~~-~~~~~~g~--~ 233 (516)
T TIGR03377 159 GRVTGVKVEDHKTGEEERIEAQVVINAAGIWAGRIAEYAGLDI--RMFPAKGALLIMNHRINNTVINR-CRKPSDAD--I 233 (516)
T ss_pred CEEEEEEEEEcCCCcEEEEEcCEEEECCCcchHHHHHhcCCCC--ceecceEEEEEECCccccccccc-ccCCCCCc--E
Confidence 6888999877566766789999999999999999999888753 48999999999976432211111 11134554 5
Q ss_pred EeecCCcEEeeecCCCCCCCCCCCCCHHHHHHHHHHHhhhccCCCCCCCcccceeeeeecccCCCCCCCCCccccceEee
Q 008503 281 MLPWLGRTVAGTTDSDTVITLLPEPHEDEIQFILDAISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCE 360 (563)
Q Consensus 281 ~~P~~g~~~iG~t~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~l~~~~v~~~~aG~rp~~~d~~~~~~~~~~~~~~i~~ 360 (563)
++|+++..++|+|++..+++++..++.++++++++.+.+++ |.+...++++.|+|+||+..++.......++|+|.|..
T Consensus 234 ~~P~~~~~liGtT~~~~~~~~~~~~~~~~v~~ll~~~~~~~-P~l~~~~i~~~~aGvRPl~~~~~~~~~~~~sR~~~i~~ 312 (516)
T TIGR03377 234 LVPGDTISIIGTTSERIDDPDDLPVTQEEVDVLLREGAKLA-PMLAQTRILRAFAGVRPLVAVDDDPSGRNISRGIVLLD 312 (516)
T ss_pred EEECCCeEEEecCCCCCCCCCCCCCCHHHHHHHHHHHHHhC-cccccCCEEEEEeecccccCCCCCCCccccCCCeEEee
Confidence 78998899999998776566777899999999999999999 78999999999999999876533233567889997753
Q ss_pred c-----CCCeEEEecChhhhhHHHHHHHHHHHHHcCCCCCCCCCccccccccCCCCCCcchHHHHHHHHhhhhhccCCCc
Q 008503 361 D-----FPGLVTITGGKWTTYRSMAEDAVNAAIKSGKLNPSNGCLTQNLRLVGGDGWDPSSFTVLAQQYVRMKRTYGGKF 435 (563)
Q Consensus 361 ~-----~~gl~~~~Gg~~t~a~~~Ae~v~~~i~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (563)
+ .+|+++++|||||++|+|||++++.+++.++ ...+|+|...+|+|+.++.. ...+...+.
T Consensus 313 ~~~~~~~~g~i~i~GGkltt~r~~Ae~~~d~~~~~l~--~~~~~~t~~~~l~~~~~~~~--~~~~~~~~~---------- 378 (516)
T TIGR03377 313 HAERDGLPGFITITGGKLTTYRLMAEWATDVVCKKLG--NDRPCRTADEPLPGSEDPTA--VKTLKKLIS---------- 378 (516)
T ss_pred cccccCCCCeEEEecchHHHHHHHHHHHHHHHHHHcC--CCCCCCCCCccccCccchHH--HHHHHHHhC----------
Confidence 2 3799999999999999999999999999865 45689999999999865432 222333333
Q ss_pred cCCCCCHHHHHHHHHHhCCcHHHHHHHHhccCCCCccccCCCccHHHHHHHHHhcCCCChhHHHHhhcccccCChHHHhh
Q 008503 436 VPGVMDTAVAKHLSHAYGIMAEQVAIIAQNEGLGKRLAHGYPFLEAEVAYCARNEYCESAVDFVARRCRLAFLDTDAAGR 515 (563)
Q Consensus 436 ~~~~~~~~~~~~l~~~yg~~~~~vc~~~~~~~~~~~~~~c~~v~~~ei~~ai~~e~~~~~~D~l~rRtr~g~g~~~~g~~ 515 (563)
++.+..+++..+||+++..|+.... ...+.+++||+||++||+|||++|++.++.| |+||||+||| +|||.+
T Consensus 379 ----~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~ic~ce~v~~~Ei~~ai~~~~a~~l~d-l~RRtr~gmg-~cqg~~ 450 (516)
T TIGR03377 379 ----LPSPIAGSAVYRHGERAPQVLKDNR--LDNQVICECEMVTAGEVEYAIRELDVNNLVD-LRRRTRLGMG-TCQGEF 450 (516)
T ss_pred ----CCHHHHHHHHHhhCccHHHHHhccc--CCCCcCCCCccccHHHHHHHHHhcCCCCHHH-HHHHHhcCcC-ccccch
Confidence 7888899999999999888876332 3336788999999999999999999999999 9999999999 799999
Q ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 008503 516 ALPRIIEIMATEHKWDKSRRKQELQKAK 543 (563)
Q Consensus 516 ~~~~v~~~la~~l~~~~~~~~~e~~~~~ 543 (563)
|.++++++|+++++|+++++..+++++.
T Consensus 451 c~~~~~~~~~~~~~~~~~~~~~~l~~f~ 478 (516)
T TIGR03377 451 CAYRAAGLLSREGLIDPEQSTELLREFL 478 (516)
T ss_pred HHHHHHHHHHHhhCCChhhhHHHHHHHH
Confidence 9999999999999999999998887754
No 8
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.97 E-value=6.5e-29 Score=260.96 Aligned_cols=299 Identities=20% Similarity=0.248 Sum_probs=208.2
Q ss_pred CccEEEECCchHHHHHHHHHHHC--CCcEEEEeccC-CCCCCccCCCCccccchhhHH----------------HHhhcc
Q 008503 71 PLDILVIGGGATGCGVALDAATR--GLRVGLVERED-FSSGTSSRSTKLIHGGVRYLE----------------KAVFNL 131 (563)
Q Consensus 71 ~~DVvIIGaGiaG~~~A~~la~~--G~~V~llEk~~-~~~g~s~~~~~~~~~g~~~~~----------------~~~~~~ 131 (563)
.+||+|||||++|+++|++|+++ |++|+||||+. ++.++|++|+|++|++..+.. +...++
T Consensus 2 ~~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~~~~~~aS~~~~g~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 81 (393)
T PRK11728 2 MYDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESGPARHQTGHNSGVIHAGVYYTPGSLKARFCRRGNEATKAFCDQH 81 (393)
T ss_pred CccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCCcccccccccCcceEccccccCcHHHHHHHHHHHHHHHHHHHHHc
Confidence 38999999999999999999999 99999999985 788999999999987643211 111111
Q ss_pred --Cc------------ccHHHH---HHHHHHhhhc-----------ccC---CcceEEEecCceechHHHHHHHHHHHHH
Q 008503 132 --DY------------GQLKLV---FHALEERKQA-----------KDR---SLKGAVVYYDGQMNDSRLNVGLALTAAL 180 (563)
Q Consensus 132 --~~------------~~~~~~---~~~l~~~~~~-----------~~~---~~~~~~~~~~~~~~~~~l~~~l~~~a~~ 180 (563)
.+ .+...+ .+...+.+.. ..+ ...+.+.+.++++++..+...|.+.+.+
T Consensus 82 ~~~~~~~G~l~~~~~~~~~~~l~~~~~~~~~~g~~~~~l~~~el~~~~P~l~~~~al~~p~~g~vd~~~l~~aL~~~~~~ 161 (393)
T PRK11728 82 GIPYEECGKLLVATSELELERMEALYERARANGIEVERLDAEELREREPNIRGLGAIFVPSTGIVDYRAVAEAMAELIQA 161 (393)
T ss_pred CCCcccCCEEEEEcCHHHHHHHHHHHHHHHHCCCcEEEeCHHHHHHhCCCccccceEEcCCceEECHHHHHHHHHHHHHh
Confidence 11 001111 1111111110 111 1233446778999999999999999999
Q ss_pred CCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccCcChhhhhhhhcCCCCCeeecCCceEEEecCC
Q 008503 181 AGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQPMICPSSGVHIVLPDY 260 (563)
Q Consensus 181 ~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~~s~~l~~~~g~~~~~~v~~~~G~~~~~~~~ 260 (563)
+|++++++++|+++..++ +.+ .|.. .++ ++.|+.||+|+|.|+..+.+++|.+.+..+.|.||+++.+...
T Consensus 162 ~Gv~i~~~~~V~~i~~~~--~~~-~V~~---~~g---~i~ad~vV~A~G~~s~~l~~~~g~~~~~~v~p~rGq~~~~~~~ 232 (393)
T PRK11728 162 RGGEIRLGAEVTALDEHA--NGV-VVRT---TQG---EYEARTLINCAGLMSDRLAKMAGLEPDFRIVPFRGEYYRLAPE 232 (393)
T ss_pred CCCEEEcCCEEEEEEecC--CeE-EEEE---CCC---EEEeCEEEECCCcchHHHHHHhCCCCCCceEEeeeEEEEeccc
Confidence 999999999999998764 333 3432 222 6999999999999999999888875445589999999998754
Q ss_pred cCCCCcccccccCC---CCcEEEEeec-CCcEEeeecCCCCCCCC--CCC-C---------------------CHHHHHH
Q 008503 261 YSPEGMGLIVPKTK---DGRVVFMLPW-LGRTVAGTTDSDTVITL--LPE-P---------------------HEDEIQF 312 (563)
Q Consensus 261 ~~~~~~~~~~~~~~---~g~~~~~~P~-~g~~~iG~t~~~~~~~~--~~~-~---------------------~~~~~~~ 312 (563)
..+....++++... ....+++.|. +|++++|++.+...... +.. . +.+.++.
T Consensus 233 ~~~~~~~~v~~~p~~~~~~~g~~~~p~~~G~~~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (393)
T PRK11728 233 KNQLVNHLIYPVPDPAFPFLGVHLTRMIDGSVTVGPNAVLAFKREGYRKRDFSLRDLLEILTYPGFWKLAQKHWRSGLGE 312 (393)
T ss_pred cccccCCceecCCCCCCCcceEEeecCCCCCEEECCCcceehhhcCccccCCCHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 22222233333111 1234688897 67899998544322111 111 1 4455566
Q ss_pred H---------HHHHhhhccCCCCCCCcccceeeeee--cccCCCCCCCCCccccceEeecCCCeEEEecC---hhhhhHH
Q 008503 313 I---------LDAISDYLNVKVRRTDVLSAWSGIRP--LAMDPSAKNTESISRDHVVCEDFPGLVTITGG---KWTTYRS 378 (563)
Q Consensus 313 l---------l~~~~~~~~~~l~~~~v~~~~aG~rp--~~~d~~~~~~~~~~~~~~i~~~~~gl~~~~Gg---~~t~a~~ 378 (563)
+ ++.+.+++ |.+...+++..|+|+|| .++|+. ...|++|... ++++++.|+ ++|++++
T Consensus 313 ~~~~~~~~~~~~~a~~~~-P~l~~~~i~~~~~G~Rp~~~~~d~~------~~~d~~i~~~-~~~~~~~~~~spg~t~s~~ 384 (393)
T PRK11728 313 MKNSLSKSGYLRLVQKYC-PSLTLSDLQPYPAGVRAQAVSRDGK------LVDDFLFVET-PRSLHVCNAPSPAATSSLP 384 (393)
T ss_pred HHhhhhHHHHHHHHHHhC-CCCCHHHcccCCCceeeeeeCCCCC------ccCceEEecC-CCEEEEcCCCCchHHccHH
Confidence 6 58999999 78999999999999999 666642 2356766643 789999996 6999999
Q ss_pred HHHHHHHH
Q 008503 379 MAEDAVNA 386 (563)
Q Consensus 379 ~Ae~v~~~ 386 (563)
||++|++.
T Consensus 385 ia~~v~~~ 392 (393)
T PRK11728 385 IGEHIVSK 392 (393)
T ss_pred HHHHHHhh
Confidence 99999985
No 9
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.96 E-value=2.6e-28 Score=250.42 Aligned_cols=309 Identities=23% Similarity=0.296 Sum_probs=223.3
Q ss_pred CCccEEEECCchHHHHHHHHHHHCC--CcEEEEeccC-CCCCCccCCCCccccchhhHHHH----------------hhc
Q 008503 70 NPLDILVIGGGATGCGVALDAATRG--LRVGLVERED-FSSGTSSRSTKLIHGGVRYLEKA----------------VFN 130 (563)
Q Consensus 70 ~~~DVvIIGaGiaG~~~A~~la~~G--~~V~llEk~~-~~~g~s~~~~~~~~~g~~~~~~~----------------~~~ 130 (563)
.+|||+||||||+|+++|++|++++ ++|+||||.+ ++.++|++|++.+|.|+.|-... ..+
T Consensus 2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS~~NSgviHag~~y~p~slka~l~~~g~~~~~~~~kq 81 (429)
T COG0579 2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESSSNNSGVIHAGLYYTPGSLKAKLCVAGNINEFAICKQ 81 (429)
T ss_pred CceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCccccccccCcccceeccccCCCcchhhHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999998 9999999985 89999999999999998664321 111
Q ss_pred cC--c---------------ccHHHHHHHHHHhhhc----------------ccCCcce-EEEecCceechHHHHHHHHH
Q 008503 131 LD--Y---------------GQLKLVFHALEERKQA----------------KDRSLKG-AVVYYDGQMNDSRLNVGLAL 176 (563)
Q Consensus 131 ~~--~---------------~~~~~~~~~l~~~~~~----------------~~~~~~~-~~~~~~~~~~~~~l~~~l~~ 176 (563)
+. + ..++..++.+.+++.. ..+...+ .+.+..+.+++..++..|++
T Consensus 82 ~~~~f~~~g~l~vA~~e~e~~~L~~l~~~~~~ngv~~~~~ld~~~i~~~eP~l~~~~~aal~~p~~giV~~~~~t~~l~e 161 (429)
T COG0579 82 LGIPFINCGKLSVATGEEEVERLEKLYERGKANGVFDLEILDKEEIKELEPLLNEGAVAALLVPSGGIVDPGELTRALAE 161 (429)
T ss_pred hCCcccccCeEEEEEChHHHHHHHHHHHHHhhCCCcceeecCHHHHHhhCccccccceeeEEcCCCceEcHHHHHHHHHH
Confidence 11 0 1112222333332222 1222333 45788899999999999999
Q ss_pred HHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccCcChhhhhhhhcCCCCCeeecCCceEEE
Q 008503 177 TAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQPMICPSSGVHIV 256 (563)
Q Consensus 177 ~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~~s~~l~~~~g~~~~~~v~~~~G~~~~ 256 (563)
.++++|++++++++|++|++.++ | ++.+.. .+|+.. ++||.||||+|.+|+.++++.|.+......|.+|++++
T Consensus 162 ~a~~~g~~i~ln~eV~~i~~~~d-g-~~~~~~---~~g~~~-~~ak~Vin~AGl~Ad~la~~~g~~~~~~~~P~~G~y~~ 235 (429)
T COG0579 162 EAQANGVELRLNTEVTGIEKQSD-G-VFVLNT---SNGEET-LEAKFVINAAGLYADPLAQMAGIPEDFKIFPVRGEYLV 235 (429)
T ss_pred HHHHcCCEEEecCeeeEEEEeCC-c-eEEEEe---cCCcEE-EEeeEEEECCchhHHHHHHHhCCCcccccCccceEEEE
Confidence 99999999999999999999875 3 333332 455433 99999999999999999999998864668999999999
Q ss_pred ecCCcCCCCcccccccC-CC--CcEEEEeec-CCcEEeeecCCCCC--CCCCCCCCHHHHHHHHHHHhhhccCCCC-CCC
Q 008503 257 LPDYYSPEGMGLIVPKT-KD--GRVVFMLPW-LGRTVAGTTDSDTV--ITLLPEPHEDEIQFILDAISDYLNVKVR-RTD 329 (563)
Q Consensus 257 ~~~~~~~~~~~~~~~~~-~~--g~~~~~~P~-~g~~~iG~t~~~~~--~~~~~~~~~~~~~~ll~~~~~~~~~~l~-~~~ 329 (563)
++.......+..+++.. .. +..+.+.|. +|.+++||+....+ ...+...+.+..+.+.....+++ +.+. ...
T Consensus 236 ~~~~~~~~~~~~Iy~~p~~~~p~~gV~~~~~idG~~l~GP~A~~~~~~~k~~~~~~~d~~d~v~~~~~~~~-~~~~~~~~ 314 (429)
T COG0579 236 LDNEVKALLRHKIYPVPNPGLPGLGVHHTPTIDGSLLFGPNALDSPKFLKGDRGVDFDLLDSVRKANSRGM-PDLGIKNN 314 (429)
T ss_pred EcccccccccceeecCCCCCCCCCcceeecccCCeEEECCCcccchhhhccccccccchhhhHHHhhhhhc-cccccccc
Confidence 98744443445555422 22 344566665 68899999987642 22235667777788888888887 5555 556
Q ss_pred cccceeeeeecccCCCCCCCCCccccceEee--cCCCeEEEecC---hhhhhHHHHHHHHHHHHHc
Q 008503 330 VLSAWSGIRPLAMDPSAKNTESISRDHVVCE--DFPGLVTITGG---KWTTYRSMAEDAVNAAIKS 390 (563)
Q Consensus 330 v~~~~aG~rp~~~d~~~~~~~~~~~~~~i~~--~~~gl~~~~Gg---~~t~a~~~Ae~v~~~i~~~ 390 (563)
....++|.||+...+. .-..++++-. +.++++.++|. .+|.++++++.++..+.+.
T Consensus 315 ~~~~y~~~r~~~~~~~-----~~~~~~~ip~~~~~~~~~~~aGiRsq~lt~~~a~~~~~~~~~t~~ 375 (429)
T COG0579 315 VLANYAGIRPILKEPR-----LPALDFIIPEAKDEDWFINVAGIRSQGLTADPAIAGGVLELLTER 375 (429)
T ss_pred chhhhheecccccccc-----ccccceecccccCCCCceeeeeEEccccccChhHhhhHhhhcccc
Confidence 7789999999863221 1113455553 34678888886 4899999999999877654
No 10
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.96 E-value=5.4e-28 Score=250.22 Aligned_cols=292 Identities=27% Similarity=0.393 Sum_probs=207.0
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccch---h---h----------HHHHhhccC----
Q 008503 73 DILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGV---R---Y----------LEKAVFNLD---- 132 (563)
Q Consensus 73 DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~---~---~----------~~~~~~~~~---- 132 (563)
||+|||||++|+++|++|+++|++|+|||++.+++++|+++.++++++. . + +++......
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G~~V~l~e~~~~~~~aS~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 80 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRGHSVTLLERGDIGSGASGRSGGLVRPGISSYPDPQYARLARESVEFWRELAEEYGIPVG 80 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTTSEEEEEESSSTTSSGGGSSSEEEECSGSHHSSHHHHHHHHHHHHHHHHHHHHTTSSCE
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeeccccccccccccccccccccccccccccchhhhhccchhhhhhhcCcccc
Confidence 8999999999999999999999999999999999999999999998772 1 1 111101000
Q ss_pred c------------ccHH---HHHHHHHHhhhc---------------ccCCcceE-EEecCceechHHHHHHHHHHHHHC
Q 008503 133 Y------------GQLK---LVFHALEERKQA---------------KDRSLKGA-VVYYDGQMNDSRLNVGLALTAALA 181 (563)
Q Consensus 133 ~------------~~~~---~~~~~l~~~~~~---------------~~~~~~~~-~~~~~~~~~~~~l~~~l~~~a~~~ 181 (563)
+ .... ...+.+...+.. ..+....+ +.+.++.+++.+++..|.+.+++.
T Consensus 81 ~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~i~~~~l~~~l~~~~~~~ 160 (358)
T PF01266_consen 81 FRPCGSLYLAEDEEDAESLERLLDRLRRNGIPYELLSPEELRELFPFLNPRIEGGVFFPEGGVIDPRRLIQALAAEAQRA 160 (358)
T ss_dssp EEECEEEEEESSHHHHHHHHHHHHHHHHTTTTEEEEEHHHHHHHSTTSSTTTEEEEEETTEEEEEHHHHHHHHHHHHHHT
T ss_pred cccccccccccchhhhhhccccccccccccccccccchhhhhhhhcccccchhhhhcccccccccccchhhhhHHHHHHh
Confidence 0 0111 112222222220 12333344 456677899999999999999999
Q ss_pred CCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccCcChhhhhhhhcCCCCCeeecCCceEEEecCCc
Q 008503 182 GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQPMICPSSGVHIVLPDYY 261 (563)
Q Consensus 182 G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~~s~~l~~~~g~~~~~~v~~~~G~~~~~~~~~ 261 (563)
|++++++++|++|..++ +++.+|.+ .. .+++||.||+|+|.|+..+....+... .+.+.+|+++.++...
T Consensus 161 Gv~i~~~~~V~~i~~~~--~~v~gv~~-----~~-g~i~ad~vV~a~G~~s~~l~~~~~~~~--~~~~~~~~~~~~~~~~ 230 (358)
T PF01266_consen 161 GVEIRTGTEVTSIDVDG--GRVTGVRT-----SD-GEIRADRVVLAAGAWSPQLLPLLGLDL--PLRPVRGQVLVLEPPE 230 (358)
T ss_dssp T-EEEESEEEEEEEEET--TEEEEEEE-----TT-EEEEECEEEE--GGGHHHHHHTTTTSS--TEEEEEEEEEEEEGCC
T ss_pred hhhccccccccchhhcc--cccccccc-----cc-cccccceeEecccccceeeeecccccc--cccccceEEEEEccCC
Confidence 99999999999999886 57777865 22 359999999999999999988887754 3889999999887643
Q ss_pred CCCCccccccc--CCCCcEEEEeecCCcEEeeecCCCCC-CCCC-------CCCCHHHHHHHHHHHhhhccCCCCCCCcc
Q 008503 262 SPEGMGLIVPK--TKDGRVVFMLPWLGRTVAGTTDSDTV-ITLL-------PEPHEDEIQFILDAISDYLNVKVRRTDVL 331 (563)
Q Consensus 262 ~~~~~~~~~~~--~~~g~~~~~~P~~g~~~iG~t~~~~~-~~~~-------~~~~~~~~~~ll~~~~~~~~~~l~~~~v~ 331 (563)
......+.... ..+....|+.|+.+.+++|+++.... .... ...+.+ ++.+++.+.+++ |.+...++.
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~-p~l~~~~v~ 308 (358)
T PF01266_consen 231 SPLAPAILFPPVIFGPSDGVYIRPRPGGVLIGTADGNYDPGPSPEDSSGEDPDVDEE-IDELLERLARLL-PGLGDAEVV 308 (358)
T ss_dssp SGSSSEEEEEEECESSCTEEEEEEETTEEEEEESECEEEESSSHHHHSHHHHHHHHH-HHHHHHHHHHHS-GGGGGSEEE
T ss_pred cccccccccccccccccccceecccccccccccccccccccccccccccccccccHH-HHHhHHHHHHHH-HHhhhcccc
Confidence 33322222221 22346688899889899996552211 1110 011122 568999999999 788888999
Q ss_pred cceeeeeecccCCCCCCCCCccccceEeec--CCCeEEEecC---hhhhhHHHHHHHHHH
Q 008503 332 SAWSGIRPLAMDPSAKNTESISRDHVVCED--FPGLVTITGG---KWTTYRSMAEDAVNA 386 (563)
Q Consensus 332 ~~~aG~rp~~~d~~~~~~~~~~~~~~i~~~--~~gl~~~~Gg---~~t~a~~~Ae~v~~~ 386 (563)
+.|+|+||.++|+. |++... .+|++.++|. +++.++.+|+.++++
T Consensus 309 ~~~~g~r~~t~d~~----------p~ig~~~~~~~l~~~~g~~~~G~~~a~~~a~~~a~~ 358 (358)
T PF01266_consen 309 RSWAGIRPFTPDGR----------PIIGELPGSPNLYLAGGHGGHGFTLAPGLAELLADL 358 (358)
T ss_dssp EEEEEEEEEETTSE----------CEEEEESSEEEEEEEECETTCHHHHHHHHHHHHHHH
T ss_pred ccccceeeeccCCC----------eeeeecCCCCCEEEEECCCchHHHHHHHHHHHHhcC
Confidence 99999999998843 788764 4789998873 699999999999874
No 11
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.95 E-value=4.5e-26 Score=240.98 Aligned_cols=300 Identities=20% Similarity=0.200 Sum_probs=200.8
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEeccC-CCCCCccCCCCccccch--------------hh-------------
Q 008503 72 LDILVIGGGATGCGVALDAATRGLRVGLVERED-FSSGTSSRSTKLIHGGV--------------RY------------- 123 (563)
Q Consensus 72 ~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~-~~~g~s~~~~~~~~~g~--------------~~------------- 123 (563)
+||+|||||++|+++|++|+++|++|+||||++ .+.|+|++|+|++++.. ++
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~~~~~~as~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHRYAAMETSFANGGQLSASNAEVWNHWATVLKGLKWMLRKDAPLLLNPK 81 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCCcCcccccCCEEeecccccccChHHHHhhhHHhcCCCCCeEecCC
Confidence 599999999999999999999999999999997 78999999999886522 00
Q ss_pred --------HHHH----------------------------hhc--cC--cc------------cH---HHHHHHHHHhhh
Q 008503 124 --------LEKA----------------------------VFN--LD--YG------------QL---KLVFHALEERKQ 148 (563)
Q Consensus 124 --------~~~~----------------------------~~~--~~--~~------------~~---~~~~~~l~~~~~ 148 (563)
+.+. ... ++ +. +. ....+.+.+.+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~G~l~~a~~~~~~~~l~~~~~~~~~~g~ 161 (410)
T PRK12409 82 PSWHKYSWLAEFLAHIPNYRANTIETVRLAIAARKHLFDIAEREGIDFDLERRGILHIYHDKAGFDHAKRVNALLAEGGL 161 (410)
T ss_pred CCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcceeecCcEEEEECCHHHHHhccHHHHHHHhcCC
Confidence 0000 000 00 00 00 001111111110
Q ss_pred c---------------ccCCcceEE-EecCceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECC
Q 008503 149 A---------------KDRSLKGAV-VYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNL 212 (563)
Q Consensus 149 ~---------------~~~~~~~~~-~~~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~ 212 (563)
. ....+.+++ .+.++++++..++..|.+.+.+.|++++++++|+++..++ +.+ .+.+.+..
T Consensus 162 ~~~~l~~~e~~~~~P~l~~~~~ga~~~~~~g~~~~~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~--~~~-~v~~~~~~ 238 (410)
T PRK12409 162 ERRAVTPEEMRAIEPTLTGEYYGGYYTPSDSTGDIHKFTTGLAAACARLGVQFRYGQEVTSIKTDG--GGV-VLTVQPSA 238 (410)
T ss_pred CeEEcCHHHHHHhCCCCccccceEEEcCCCCccCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeC--CEE-EEEEEcCC
Confidence 0 122233444 5567889999999999999999999999999999998764 344 34443211
Q ss_pred CCcEEEEEeCeEEEccCcChhhhhhhhcCCCCCeeecCCceEEEecCCcC--CCCcccccccCCCCcEEEEeecCCcEEe
Q 008503 213 SGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQPMICPSSGVHIVLPDYYS--PEGMGLIVPKTKDGRVVFMLPWLGRTVA 290 (563)
Q Consensus 213 ~g~~~~i~A~~VI~AtG~~s~~l~~~~g~~~~~~v~~~~G~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~P~~g~~~i 290 (563)
.++..+++|+.||+|+|+|+..+..+++... .+.|.+|++++++.... +...+.+.....+..+.+..+..+..++
T Consensus 239 ~~~~~~i~a~~vV~a~G~~s~~l~~~~~~~~--~i~p~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i 316 (410)
T PRK12409 239 EHPSRTLEFDGVVVCAGVGSRALAAMLGDRV--NVYPVKGYSITVNLDDEASRAAAPWVSLLDDSAKIVTSRLGADRFRV 316 (410)
T ss_pred CCccceEecCEEEECCCcChHHHHHHhCCCC--ccccCCceEEEeecCCccccccCCceeeeecCCcEEEEecCCCcEEE
Confidence 1012468999999999999999988777553 38899999887643211 1111211110112222221222456777
Q ss_pred eecCCCCCCCCCCCCCHHHHHHHHHHHhhhccCCCCCCCcccceeeeeecccCCCCCCCCCccccceEeec-CCCeEEEe
Q 008503 291 GTTDSDTVITLLPEPHEDEIQFILDAISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCED-FPGLVTIT 369 (563)
Q Consensus 291 G~t~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~l~~~~v~~~~aG~rp~~~d~~~~~~~~~~~~~~i~~~-~~gl~~~~ 369 (563)
|.+.+. ...+..++.+.++.+++.+.++| |.+....+. .|+|+||.++|+. |+|+.. .+|++.++
T Consensus 317 gg~~~~--~~~~~~~~~~~~~~l~~~~~~~~-P~l~~~~~~-~w~G~r~~t~D~~----------PiiG~~~~~~l~~~~ 382 (410)
T PRK12409 317 AGTAEF--NGYNRDIRADRIRPLVDWVRRNF-PDVSTRRVV-PWAGLRPMMPNMM----------PRVGRGRRPGVFYNT 382 (410)
T ss_pred EEEEEe--cCCCCCCCHHHHHHHHHHHHHhC-CCCCccccc-eecccCCCCCCCC----------CeeCCCCCCCEEEec
Confidence 776543 22334566778999999999999 678776665 7999999999864 888764 47999998
Q ss_pred c--C-hhhhhHHHHHHHHHHHHHc
Q 008503 370 G--G-KWTTYRSMAEDAVNAAIKS 390 (563)
Q Consensus 370 G--g-~~t~a~~~Ae~v~~~i~~~ 390 (563)
| + +++.++.+|+.+++++...
T Consensus 383 G~~~~G~~~ap~~g~~lA~~i~~~ 406 (410)
T PRK12409 383 GHGHLGWTLSAATADLVAQVVAQK 406 (410)
T ss_pred CCcccchhhcccHHHHHHHHHcCC
Confidence 8 2 6999999999999988643
No 12
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=99.95 E-value=3.6e-26 Score=242.27 Aligned_cols=292 Identities=18% Similarity=0.185 Sum_probs=202.6
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEeccC-CCCCCccCCCCccccchhhHH--------------------------
Q 008503 73 DILVIGGGATGCGVALDAATRGLRVGLVERED-FSSGTSSRSTKLIHGGVRYLE-------------------------- 125 (563)
Q Consensus 73 DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~-~~~g~s~~~~~~~~~g~~~~~-------------------------- 125 (563)
||+|||||++|+++|++|+++|.+|+|||+.. .+.++|++|+|++++++.+..
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~~~~~aS~~n~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPGPALETSFANAGQISPGYAAPWAAPGVPLKAIKWLFQRHAPLAIRPDG 81 (416)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCchhhhheeccCcccccccccccCCCchhhhhhhhccCCCCCeEecCCC
Confidence 89999999999999999999999999999984 789999999999987642100
Q ss_pred -----------------------------------HHhhc------cC--cc------------cHHHHH---HHHHHhh
Q 008503 126 -----------------------------------KAVFN------LD--YG------------QLKLVF---HALEERK 147 (563)
Q Consensus 126 -----------------------------------~~~~~------~~--~~------------~~~~~~---~~l~~~~ 147 (563)
+.+.+ .+ +. +...+. +.+.+.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~~~~~~l~~~~~~~~~~~~~G~l~~a~~~~~~~~l~~~~~~~~~~g 161 (416)
T PRK00711 82 DPFQLRWMWQMLRNCTASRYAVNKSRMVRLAEYSRDCLKALRAETGIQYEGRQGGTLQLFRTQQQLDAAAKDIAVLEEAG 161 (416)
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccccCcEEEEECCHHHHHHHHHHHHHHHHcC
Confidence 00000 00 00 000011 1111111
Q ss_pred hc-----------c-------cCCcceEE-EecCceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEE
Q 008503 148 QA-----------K-------DRSLKGAV-VYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARI 208 (563)
Q Consensus 148 ~~-----------~-------~~~~~~~~-~~~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~ 208 (563)
.. . .+.+.+++ .+.++.++|..++..|.+.+.++|++|+++++|+++..++ +++++|..
T Consensus 162 ~~~~~l~~~e~~~~~P~l~~~~~~~~ga~~~p~~g~~~p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~--~~~~~v~t 239 (416)
T PRK00711 162 VPYELLDRDELAAVEPALAGVRHKLVGGLRLPNDETGDCQLFTQRLAAMAEQLGVKFRFNTPVDGLLVEG--GRITGVQT 239 (416)
T ss_pred CCceecCHHHHHHhCCCccCCCccceeEEECCCcccCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecC--CEEEEEEe
Confidence 10 0 02333443 5667899999999999999999999999999999998765 45655543
Q ss_pred EECCCCcEEEEEeCeEEEccCcChhhhhhhhcCCCCCeeecCCceEEEecCCcCCCCcccccccCCCCcEEEEee-cCCc
Q 008503 209 RNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLP-WLGR 287 (563)
Q Consensus 209 ~d~~~g~~~~i~A~~VI~AtG~~s~~l~~~~g~~~~~~v~~~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~P-~~g~ 287 (563)
. + .++.|+.||+|+|.|+..+.+..+.+.| +.|.+|+.+.++..... ..+... ..+....+.++ .++.
T Consensus 240 ---~-~--~~~~a~~VV~a~G~~~~~l~~~~g~~~p--i~p~rg~~~~~~~~~~~-~~p~~~--~~~~~~~~~~~~~~~~ 308 (416)
T PRK00711 240 ---G-G--GVITADAYVVALGSYSTALLKPLGVDIP--VYPLKGYSLTVPITDED-RAPVST--VLDETYKIAITRFDDR 308 (416)
T ss_pred ---C-C--cEEeCCEEEECCCcchHHHHHHhCCCcc--cCCccceEEEEecCCCC-CCCcee--EEecccCEEEeecCCc
Confidence 1 2 3689999999999999988877776543 78999987766432111 111111 01121122333 4567
Q ss_pred EEeeecCCCCCCCCCCCCCHHHHHHHHHHHhhhccCCCCCCCcccceeeeeecccCCCCCCCCCccccceEeec-CCCeE
Q 008503 288 TVAGTTDSDTVITLLPEPHEDEIQFILDAISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCED-FPGLV 366 (563)
Q Consensus 288 ~~iG~t~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~l~~~~v~~~~aG~rp~~~d~~~~~~~~~~~~~~i~~~-~~gl~ 366 (563)
.++|.+.... ..+..++.+..+.+.+.+.++| |.+....+.+.|+|+||.++|+. |+|+.. .+|++
T Consensus 309 ~~iG~~~~~~--~~~~~~~~~~~~~l~~~~~~~~-P~l~~~~~~~~w~G~r~~t~D~~----------PiIG~~~~~gl~ 375 (416)
T PRK00711 309 IRVGGMAEIV--GFDLRLDPARRETLEMVVRDLF-PGGGDLSQATFWTGLRPMTPDGT----------PIVGATRYKNLW 375 (416)
T ss_pred eEEEEEEEec--CCCCCCCHHHHHHHHHHHHHHC-CCcccccccceeeccCCCCCCCC----------CEeCCcCCCCEE
Confidence 8888765431 2233566777888888899999 67777788899999999999854 788754 47999
Q ss_pred EEecC---hhhhhHHHHHHHHHHHHHc
Q 008503 367 TITGG---KWTTYRSMAEDAVNAAIKS 390 (563)
Q Consensus 367 ~~~Gg---~~t~a~~~Ae~v~~~i~~~ 390 (563)
.++|. +++.+|.+|+.+++++...
T Consensus 376 ~a~G~~g~G~~~ap~~g~~la~li~g~ 402 (416)
T PRK00711 376 LNTGHGTLGWTMACGSGQLLADLISGR 402 (416)
T ss_pred EecCCchhhhhhhhhHHHHHHHHHcCC
Confidence 99983 6999999999999998743
No 13
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.95 E-value=1.9e-25 Score=235.96 Aligned_cols=296 Identities=18% Similarity=0.243 Sum_probs=206.7
Q ss_pred CCCccEEEECCchHHHHHHHHHHHC-CC-cEEEEeccCCCCCCccCCCCccccchhh-------------HHHHhhc--c
Q 008503 69 SNPLDILVIGGGATGCGVALDAATR-GL-RVGLVEREDFSSGTSSRSTKLIHGGVRY-------------LEKAVFN--L 131 (563)
Q Consensus 69 ~~~~DVvIIGaGiaG~~~A~~la~~-G~-~V~llEk~~~~~g~s~~~~~~~~~g~~~-------------~~~~~~~--~ 131 (563)
..++||+|||||++|+++|++|+++ |. +|+||||+.++.|+|++|+++++.++.+ +++...+ .
T Consensus 28 ~~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~~~~gas~~~~g~~~~~~~~~~~~~~~~~s~~l~~~l~~~~~~ 107 (407)
T TIGR01373 28 KPTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWLGGGNTGRNTTIVRSNYLYPESAELYEHAMKLWEGLSQDLNY 107 (407)
T ss_pred CccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEcccccCcccccccceeeecccCccccHHHHHHHHHHHHHHHHhCC
Confidence 4679999999999999999999996 95 8999999999999999999998754321 1111011 0
Q ss_pred --Cc------------ccHHHH---HHHHHHhhhc-----------ccC----------CcceE-EEecCceechHHHHH
Q 008503 132 --DY------------GQLKLV---FHALEERKQA-----------KDR----------SLKGA-VVYYDGQMNDSRLNV 172 (563)
Q Consensus 132 --~~------------~~~~~~---~~~l~~~~~~-----------~~~----------~~~~~-~~~~~~~~~~~~l~~ 172 (563)
.+ .+...+ .+...+.+.. ..+ ...++ +.+.++.++|..+..
T Consensus 108 ~~~~~~~G~l~~a~~~~~~~~l~~~~~~~~~~g~~~~~l~~~el~~~~P~l~~~~~~~~~~~ga~~~~~~g~v~p~~l~~ 187 (407)
T TIGR01373 108 NVMFSQRGVLNLCHSTADMDDGARRVNAMRLNGVDAELLSPEQVRRVIPILDFSPDARFPVVGGLLQRRGGTARHDAVAW 187 (407)
T ss_pred CcCEEeccEEEEeCCHHHHHHHHHHHHHHHHcCCCeEEeCHHHHHHhCCCCccccccccceeEEEEcCCCCcCCHHHHHH
Confidence 01 011111 1111111111 011 12233 356678999999999
Q ss_pred HHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccCcChhhhhhhhcCCCCCeeecCCc
Q 008503 173 GLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQPMICPSSG 252 (563)
Q Consensus 173 ~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~~s~~l~~~~g~~~~~~v~~~~G 252 (563)
.|++.+.++|++++.+++|+++..+++ +.+++|.. .+ ..+.|+.||+|+|+|+..+.++.+...+ +.+.++
T Consensus 188 ~l~~~a~~~Gv~~~~~~~V~~i~~~~~-~~~~~v~t---~~---g~i~a~~vVvaagg~~~~l~~~~g~~~~--~~~~~~ 258 (407)
T TIGR01373 188 GYARGADRRGVDIIQNCEVTGFIRRDG-GRVIGVET---TR---GFIGAKKVGVAVAGHSSVVAAMAGFRLP--IESHPL 258 (407)
T ss_pred HHHHHHHHCCCEEEeCCEEEEEEEcCC-CcEEEEEe---CC---ceEECCEEEECCChhhHHHHHHcCCCCC--cCcccc
Confidence 999999999999999999999976533 56666643 22 2699999999999999988888777643 667777
Q ss_pred eEEEecCCcCCCCcccccccCCCCcEEEEeec-CCcEEeeecCCCCCCCCCCCCCHHHHHHHHHHHhhhccCCCCCCCcc
Q 008503 253 VHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPW-LGRTVAGTTDSDTVITLLPEPHEDEIQFILDAISDYLNVKVRRTDVL 331 (563)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~P~-~g~~~iG~t~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~l~~~~v~ 331 (563)
+.++.+.. .+....++. ..++ .+|+.|. +|.+++|.+.... ...+...+.+.++.+++.+.+++ |.+....+.
T Consensus 259 ~~~~~~~~-~~~~~~~~~--~~~~-~~y~~p~~~g~~~ig~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~-P~l~~~~~~ 332 (407)
T TIGR01373 259 QALVSEPL-KPIIDTVVM--SNAV-HFYVSQSDKGELVIGGGIDGY-NSYAQRGNLPTLEHVLAAILEMF-PILSRVRML 332 (407)
T ss_pred eEEEecCC-CCCcCCeEE--eCCC-ceEEEEcCCceEEEecCCCCC-CccCcCCCHHHHHHHHHHHHHhC-CCcCCCCeE
Confidence 76654421 111111222 1222 4677886 4668888664321 12223346678889999999999 778777889
Q ss_pred cceeeeeecccCCCCCCCCCccccceEeec-CCCeEEEecC---hhhhhHHHHHHHHHHHHH
Q 008503 332 SAWSGIRPLAMDPSAKNTESISRDHVVCED-FPGLVTITGG---KWTTYRSMAEDAVNAAIK 389 (563)
Q Consensus 332 ~~~aG~rp~~~d~~~~~~~~~~~~~~i~~~-~~gl~~~~Gg---~~t~a~~~Ae~v~~~i~~ 389 (563)
+.|+|+||.++|+. |+|+.. .+|++.++|. +++.++.+|+.+++++..
T Consensus 333 ~~w~G~~~~t~D~~----------PiIg~~~~~gl~~a~G~~g~G~~~ap~~G~~la~li~~ 384 (407)
T TIGR01373 333 RSWGGIVDVTPDGS----------PIIGKTPLPNLYLNCGWGTGGFKATPASGTVFAHTLAR 384 (407)
T ss_pred EEeccccccCCCCC----------ceeCCCCCCCeEEEeccCCcchhhchHHHHHHHHHHhC
Confidence 99999999999864 888764 4799999983 699999999999999874
No 14
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.94 E-value=1.1e-24 Score=227.79 Aligned_cols=295 Identities=17% Similarity=0.142 Sum_probs=196.4
Q ss_pred CCccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCC--CCccCCCCccccch----hh----------HHHHhhcc--
Q 008503 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSS--GTSSRSTKLIHGGV----RY----------LEKAVFNL-- 131 (563)
Q Consensus 70 ~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~--g~s~~~~~~~~~g~----~~----------~~~~~~~~-- 131 (563)
.+|||+|||||++|+++|++|+++|++|+||||+..+. ++|..+.++++..+ .+ +.+.....
T Consensus 2 ~~~dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~~~~~~~ss~~~~~~~~~~~~~~~~~~~l~~~s~~~~~~l~~~~~~ 81 (376)
T PRK11259 2 MRYDVIVIGLGSMGSAAGYYLARRGLRVLGLDRFMPPHQQGSSHGDTRIIRHAYGEGPAYVPLVLRAQELWRELERESGE 81 (376)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEecccCCCCCcCcCCcceEEEeeccCCchhhHHHHHHHHHHHHHHHHhCC
Confidence 35899999999999999999999999999999987543 44444455543211 11 11110000
Q ss_pred C-c----------cc---HHHHHHHHHHhhhc---------------cc-CC-cceEEEecCceechHHHHHHHHHHHHH
Q 008503 132 D-Y----------GQ---LKLVFHALEERKQA---------------KD-RS-LKGAVVYYDGQMNDSRLNVGLALTAAL 180 (563)
Q Consensus 132 ~-~----------~~---~~~~~~~l~~~~~~---------------~~-~~-~~~~~~~~~~~~~~~~l~~~l~~~a~~ 180 (563)
+ + .. +....+.+.+.+.. .. +. ..+.+.+.+|.++|.+++..+.+.+.+
T Consensus 82 ~~~~~~G~l~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~P~l~~~~~~~a~~~~~~g~v~p~~~~~~~~~~~~~ 161 (376)
T PRK11259 82 PLFVRTGVLNLGPADSDFLANSIRSARQHGLPHEVLDAAEIRRRFPQFRLPDGYIALFEPDGGFLRPELAIKAHLRLARE 161 (376)
T ss_pred ccEEEECCEEEcCCCCHHHHHHHHHHHHcCCCcEEECHHHHHHhCCCCcCCCCceEEEcCCCCEEcHHHHHHHHHHHHHH
Confidence 0 0 00 11112222222210 11 22 223456778999999999999999999
Q ss_pred CCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccCcChhhhhhhhcCCCCCeeecCCceEEEecCC
Q 008503 181 AGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQPMICPSSGVHIVLPDY 260 (563)
Q Consensus 181 ~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~~s~~l~~~~g~~~~~~v~~~~G~~~~~~~~ 260 (563)
.|++++++++|+++..++ +.+ .|.. .++ .+.||.||+|+|.|+..+..... ..+.+.+++++.++..
T Consensus 162 ~gv~i~~~~~v~~i~~~~--~~~-~v~~---~~g---~~~a~~vV~A~G~~~~~l~~~~~----~~i~~~~~~~~~~~~~ 228 (376)
T PRK11259 162 AGAELLFNEPVTAIEADG--DGV-TVTT---ADG---TYEAKKLVVSAGAWVKDLLPPLE----LPLTPVRQVLAWFQAD 228 (376)
T ss_pred CCCEEECCCEEEEEEeeC--CeE-EEEe---CCC---EEEeeEEEEecCcchhhhccccc----CCceEEEEEEEEEecC
Confidence 999999999999998864 322 3432 222 68999999999999988766532 2277888888877642
Q ss_pred cC---CCCcccccccCCCCcEEEEeec-CCc-EEeeecCCCC-----CCCCCCCCCHHHHHHHHHHHhhhccCCCCCCCc
Q 008503 261 YS---PEGMGLIVPKTKDGRVVFMLPW-LGR-TVAGTTDSDT-----VITLLPEPHEDEIQFILDAISDYLNVKVRRTDV 330 (563)
Q Consensus 261 ~~---~~~~~~~~~~~~~g~~~~~~P~-~g~-~~iG~t~~~~-----~~~~~~~~~~~~~~~ll~~~~~~~~~~l~~~~v 330 (563)
.. ....+.+.....++..+|++|. ++. +++|.+.... ...+......+..+.+++.+.++| |.+.. +
T Consensus 229 ~~~~~~~~~p~~~~~~~~~~~~y~~p~~~~~~l~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-P~~~~--~ 305 (376)
T PRK11259 229 GRYSEPNRFPAFIWEVPDGDQYYGFPAENGPGLKIGKHNGGQEITSPDERDRFVTVAEDGAELRPFLRNYL-PGVGP--C 305 (376)
T ss_pred CccCCccCCCEEEEecCCCceeEeccCCCCCceEEEECCCCCCCCChhhccCCCCcHHHHHHHHHHHHHHC-CCCCc--c
Confidence 11 1112222221335566788887 455 7888776411 111112223567888999999998 56654 7
Q ss_pred ccceeeeeecccCCCCCCCCCccccceEeec--CCCeEEEecC---hhhhhHHHHHHHHHHHHHc
Q 008503 331 LSAWSGIRPLAMDPSAKNTESISRDHVVCED--FPGLVTITGG---KWTTYRSMAEDAVNAAIKS 390 (563)
Q Consensus 331 ~~~~aG~rp~~~d~~~~~~~~~~~~~~i~~~--~~gl~~~~Gg---~~t~a~~~Ae~v~~~i~~~ 390 (563)
...|+|+||.++|+. |+|+.. .+|++.++|. ++|.+|.+|+.++++|...
T Consensus 306 ~~~~~g~~~~t~D~~----------P~ig~~~~~~gl~~~~G~~g~G~~~ap~~g~~la~li~~~ 360 (376)
T PRK11259 306 LRGAACTYTNTPDEH----------FIIDTLPGHPNVLVASGCSGHGFKFASVLGEILADLAQDG 360 (376)
T ss_pred ccceEEecccCCCCC----------ceeecCCCCCCEEEEecccchhhhccHHHHHHHHHHHhcC
Confidence 889999999999864 888864 4799999983 6999999999999999754
No 15
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=99.94 E-value=4.1e-25 Score=246.39 Aligned_cols=288 Identities=20% Similarity=0.169 Sum_probs=198.8
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEeccC-CCCCCccCCCCccccchh--------hHH-------HHhhcc---
Q 008503 71 PLDILVIGGGATGCGVALDAATRGLRVGLVERED-FSSGTSSRSTKLIHGGVR--------YLE-------KAVFNL--- 131 (563)
Q Consensus 71 ~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~-~~~g~s~~~~~~~~~g~~--------~~~-------~~~~~~--- 131 (563)
.+||+|||||++|+++|++|+++|++|+|||++. ++.|+|+++.|++++.+. +.. +.+.++
T Consensus 260 ~~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~~~~~gaSg~~~G~l~~~~~~~~~~~~~l~~~a~~~a~~~~~~l~~~ 339 (662)
T PRK01747 260 ARDAAIIGGGIAGAALALALARRGWQVTLYEADEAPAQGASGNRQGALYPLLSKDDNALSRFFRAAFLFARRFYDALPAA 339 (662)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCeEEEEecCCCccccCCcCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5899999999999999999999999999999985 789999999998865321 110 001100
Q ss_pred ----Ccc------------cHHHHHHHHHHhhh-----c-----------ccCCcceEEEecCceechHHHHHHHHHHHH
Q 008503 132 ----DYG------------QLKLVFHALEERKQ-----A-----------KDRSLKGAVVYYDGQMNDSRLNVGLALTAA 179 (563)
Q Consensus 132 ----~~~------------~~~~~~~~l~~~~~-----~-----------~~~~~~~~~~~~~~~~~~~~l~~~l~~~a~ 179 (563)
.+. +.....+.+..... . ......+.+.+.+|+++|..++..|.+.+.
T Consensus 340 ~~~~~~~~~G~l~~a~~~~~~~~l~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~g~~~p~~G~v~p~~l~~aL~~~a~ 419 (662)
T PRK01747 340 GVAFDHDWCGVLQLAWDEKSAEKIAKMLALGLPAELARALDAEEAEELAGLPVPCGGIFYPQGGWLCPAELCRALLALAG 419 (662)
T ss_pred CCCCCCCCCceEEeecCchHHHHHHHHHhccCchHhhhhCCHHHHHHHhCCCCCCCcEEeCCCCeeCHHHHHHHHHHhcc
Confidence 000 01111111110000 0 111122345677899999999999999998
Q ss_pred HCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccCcChhhhhhhhcCCCCCeeecCCceEEEecC
Q 008503 180 LAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQPMICPSSGVHIVLPD 259 (563)
Q Consensus 180 ~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~~s~~l~~~~g~~~~~~v~~~~G~~~~~~~ 259 (563)
+ |++++++++|+++..++ +.+. |.. .++ ..++|+.||+|+|.|+..+.... .. .+.|.||+++.++.
T Consensus 420 ~-Gv~i~~~~~V~~i~~~~--~~~~-v~t---~~g--~~~~ad~VV~A~G~~s~~l~~~~--~l--pl~p~RGqv~~~~~ 486 (662)
T PRK01747 420 Q-QLTIHFGHEVARLERED--DGWQ-LDF---AGG--TLASAPVVVLANGHDAARFAQTA--HL--PLYSVRGQVSHLPT 486 (662)
T ss_pred c-CcEEEeCCEeeEEEEeC--CEEE-EEE---CCC--cEEECCEEEECCCCCcccccccc--CC--CcccccceEEeecC
Confidence 8 99999999999998765 3332 432 223 35689999999999998876543 22 28899999988765
Q ss_pred CcCCCCcccccccCCCCcEEEEee-c-CCcEEeeecCCCCCCCCCCCCCHHHHHHHHHHHhhhccCCC-----CCCCccc
Q 008503 260 YYSPEGMGLIVPKTKDGRVVFMLP-W-LGRTVAGTTDSDTVITLLPEPHEDEIQFILDAISDYLNVKV-----RRTDVLS 332 (563)
Q Consensus 260 ~~~~~~~~~~~~~~~~g~~~~~~P-~-~g~~~iG~t~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~l-----~~~~v~~ 332 (563)
.........++ ..+ .|++| . +|..++|.+.+. +..+..++.++.+.+++.+.+++ |.+ ....+..
T Consensus 487 ~~~~~~~~~~~--~~~---~Y~~p~~~~g~~~iGat~~~--~~~~~~~~~~~~~~~~~~l~~~~-P~l~~~~~~~~~~~~ 558 (662)
T PRK01747 487 TPALSALKQVL--CYD---GYLTPQPANGTHCIGASYDR--DDTDTAFREADHQENLERLAECL-PQALWAKEVDVSALQ 558 (662)
T ss_pred CccccccCcee--ECC---ceeCCCCCCCceEeCcccCC--CCCCCCCCHHHHHHHHHHHHHhC-CCchhhhccCccccC
Confidence 32111101111 112 37788 4 567889988754 23345567888889999999998 554 3456789
Q ss_pred ceeeeeecccCCCCCCCCCccccceEee----------------------c--CCCeEEEecC---hhhhhHHHHHHHHH
Q 008503 333 AWSGIRPLAMDPSAKNTESISRDHVVCE----------------------D--FPGLVTITGG---KWTTYRSMAEDAVN 385 (563)
Q Consensus 333 ~~aG~rp~~~d~~~~~~~~~~~~~~i~~----------------------~--~~gl~~~~Gg---~~t~a~~~Ae~v~~ 385 (563)
.|+|+||.++|.. |+|+. . .+|++.++|. +++++|++|+.+++
T Consensus 559 ~~aG~R~~tpD~~----------PiIG~~~~~~~~~~~y~~l~~~~~~~~~~~~~gl~v~~G~gs~Gl~~ap~~a~~lA~ 628 (662)
T PRK01747 559 GRVGFRCASRDRL----------PMVGNVPDEAATLAEYAALANQQPARDAPRLPGLYVAGALGSRGLCSAPLGAELLAS 628 (662)
T ss_pred ceEEEeccCCCcc----------cccCCCCCHHHHHHHHHhhhhccccccCCCCCCeEEEecccccHHHHHHHHHHHHHH
Confidence 9999999999854 55554 1 3689999982 79999999999999
Q ss_pred HHHH
Q 008503 386 AAIK 389 (563)
Q Consensus 386 ~i~~ 389 (563)
+|..
T Consensus 629 li~g 632 (662)
T PRK01747 629 QIEG 632 (662)
T ss_pred HHhC
Confidence 9864
No 16
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.93 E-value=8.2e-24 Score=221.49 Aligned_cols=295 Identities=15% Similarity=0.117 Sum_probs=193.5
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCC--CCCccCCCCccccch-------------hhHHHHhhccC--c-
Q 008503 72 LDILVIGGGATGCGVALDAATRGLRVGLVEREDFS--SGTSSRSTKLIHGGV-------------RYLEKAVFNLD--Y- 133 (563)
Q Consensus 72 ~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~--~g~s~~~~~~~~~g~-------------~~~~~~~~~~~--~- 133 (563)
|||+|||||++|+++|++|+++|++|+|||+.+.. .++|..++++++... +++.+...+.. .
T Consensus 1 ~dvvIIGaGi~G~s~A~~La~~g~~V~l~e~~~~~~~~~ss~~~~~~~~~~~~~~~~~~l~~~s~~~~~~l~~~~~~~~~ 80 (380)
T TIGR01377 1 FDVIVVGAGIMGCFAAYHLAKHGKKTLLLEQFDLPHSRGSSHGQSRIIRKAYPEDFYTPMMLECYQLWAQLEKEAGTKLH 80 (380)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCCCCCCCCeeeeeccCchhHhHHHHHHHHHHHHHHHHhCCeeE
Confidence 69999999999999999999999999999998653 244444555543221 11111111000 0
Q ss_pred ----------c---cHHHHHHHHHHhhhc---------------c-cCCcc-eEEEecCceechHHHHHHHHHHHHHCCC
Q 008503 134 ----------G---QLKLVFHALEERKQA---------------K-DRSLK-GAVVYYDGQMNDSRLNVGLALTAALAGA 183 (563)
Q Consensus 134 ----------~---~~~~~~~~l~~~~~~---------------~-~~~~~-~~~~~~~~~~~~~~l~~~l~~~a~~~G~ 183 (563)
. .+....+.+.+.+.. . .+... +.+.+.++.++|..++..|.+.+.+.|+
T Consensus 81 ~~~G~l~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~e~~~~~P~l~~~~~~~~~~~~~~g~i~p~~~~~~l~~~~~~~g~ 160 (380)
T TIGR01377 81 RQTGLLLLGPKENQFLKTIQATLSRHGLEHELLSSKQLKQRFPNIRVPRNEVGLLDPNGGVLYAEKALRALQELAEAHGA 160 (380)
T ss_pred eecCeEEEcCCCcHHHHHHHHHHHHcCCCeEEcCHHHHHHhCCCCcCCCCceEEEcCCCcEEcHHHHHHHHHHHHHHcCC
Confidence 0 111112222222110 0 01222 3346778999999999999999999999
Q ss_pred EEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccCcChhhhhhhhcCCCCCeeecCCceEEEecCCcCC
Q 008503 184 AVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQPMICPSSGVHIVLPDYYSP 263 (563)
Q Consensus 184 ~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~~s~~l~~~~g~~~~~~v~~~~G~~~~~~~~~~~ 263 (563)
+++.+++|+++..++ +.+ .|.. .+ .++.|+.||+|+|.|+..+.++.+...| +.+.+++...+......
T Consensus 161 ~~~~~~~V~~i~~~~--~~~-~v~~---~~---~~i~a~~vV~aaG~~~~~l~~~~g~~~~--~~~~~~~~~~~~~~~~~ 229 (380)
T TIGR01377 161 TVRDGTKVVEIEPTE--LLV-TVKT---TK---GSYQANKLVVTAGAWTSKLLSPLGIEIP--LQPLRINVCYWREKEPG 229 (380)
T ss_pred EEECCCeEEEEEecC--CeE-EEEe---CC---CEEEeCEEEEecCcchHHHhhhcccCCC--ceEEEEEEEEEecCCcc
Confidence 999999999998764 343 3432 22 2689999999999999999888876644 67777776554322111
Q ss_pred -----CCcccccccCCCCcEEEEeecC--CcEEeeecCCC-C----CCCCCCCCCHHHHHHHHHHHhhhccCCCCCCCcc
Q 008503 264 -----EGMGLIVPKTKDGRVVFMLPWL--GRTVAGTTDSD-T----VITLLPEPHEDEIQFILDAISDYLNVKVRRTDVL 331 (563)
Q Consensus 264 -----~~~~~~~~~~~~g~~~~~~P~~--g~~~iG~t~~~-~----~~~~~~~~~~~~~~~ll~~~~~~~~~~l~~~~v~ 331 (563)
...+.++. ......+|+.|.. +..+++..... . ....+..++...++.+.+.+.+++ |.+.... .
T Consensus 230 ~~~~~~~~p~~~~-~~~~~~~y~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-P~l~~~~-~ 306 (380)
T TIGR01377 230 SYGVSQAFPCFLV-LGLNPHIYGLPSFEYPGLMKVYYHHGQQIDPDERDCPFGADIEDVQILRKFVRDHL-PGLNGEP-K 306 (380)
T ss_pred ccCccCCCCEEEE-eCCCCceEecCCCCCCceEEEEeCCCCccCcccccCCCCCCHHHHHHHHHHHHHHC-CCCCCCc-c
Confidence 11222222 1122346788864 24555532211 1 011223466788899999999999 6777533 5
Q ss_pred cceeeeeecccCCCCCCCCCccccceEeec--CCCeEEEecC---hhhhhHHHHHHHHHHHHHc
Q 008503 332 SAWSGIRPLAMDPSAKNTESISRDHVVCED--FPGLVTITGG---KWTTYRSMAEDAVNAAIKS 390 (563)
Q Consensus 332 ~~~aG~rp~~~d~~~~~~~~~~~~~~i~~~--~~gl~~~~Gg---~~t~a~~~Ae~v~~~i~~~ 390 (563)
..|.|+||.++|+. |+|+.. .+|++.++|. +++.+|.+|+.++++|...
T Consensus 307 ~~~~~~~~~t~D~~----------piIg~~p~~~~l~va~G~~g~G~~~~p~~g~~la~li~~~ 360 (380)
T TIGR01377 307 KGEVCMYTNTPDEH----------FVIDLHPKYDNVVIGAGFSGHGFKLAPVVGKILAELAMKL 360 (380)
T ss_pred eeeEEEeccCCCCC----------eeeecCCCCCCEEEEecCCccceeccHHHHHHHHHHHhcC
Confidence 77999999999854 899874 4799999983 6999999999999999754
No 17
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=99.93 E-value=7.3e-24 Score=226.80 Aligned_cols=292 Identities=17% Similarity=0.134 Sum_probs=192.0
Q ss_pred CCCccEEEECCchHHHHHHHHHHHC--CCcEEEEeccCCCCCCccCCCCccccchh--------h---------------
Q 008503 69 SNPLDILVIGGGATGCGVALDAATR--GLRVGLVEREDFSSGTSSRSTKLIHGGVR--------Y--------------- 123 (563)
Q Consensus 69 ~~~~DVvIIGaGiaG~~~A~~la~~--G~~V~llEk~~~~~g~s~~~~~~~~~g~~--------~--------------- 123 (563)
+.++||+|||||++|+++|++|+++ |.+|+|||++.++.|+|++|+|++.+... +
T Consensus 22 ~~~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~~g~GaSgrn~G~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~ 101 (460)
T TIGR03329 22 DTQADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADLCGAGASGRNGGCMLTWSTKFFTLKRLFGEAEAARLVKASEQA 101 (460)
T ss_pred CceeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCccccccccccCccccccccCHHHHHHhhCHHHHHHHHHHHHHH
Confidence 4568999999999999999999998 99999999998899999999997642100 0
Q ss_pred ---HHHHhh--cc--Ccc------------cHH---HHHHHHHHhhh----c----------ccCCcce-EEEecCceec
Q 008503 124 ---LEKAVF--NL--DYG------------QLK---LVFHALEERKQ----A----------KDRSLKG-AVVYYDGQMN 166 (563)
Q Consensus 124 ---~~~~~~--~~--~~~------------~~~---~~~~~l~~~~~----~----------~~~~~~~-~~~~~~~~~~ 166 (563)
+.+... .+ ++. +.. ...+.+.+.+. + ....+.+ .+.+.++++|
T Consensus 102 ~~~~~~l~~~~~i~~~~~~~G~l~~a~~~~~~~~l~~~~~~~~~~G~~~~~~l~~~e~~~~~~~~~~~~g~~~~~~g~i~ 181 (460)
T TIGR03329 102 VLEIAAFCEQHNIDAQLRLDGTLYTATNPAQVGSMDPVVDALERRGINSWQRLSEGELARRTGSARHLEGFYSPVAASVQ 181 (460)
T ss_pred HHHHHHHHHHhCCCCCcccCCEEEEecCHHHHHHHHHHHHHHHHhCCCCeEEcCHHHHHHHhCCCcceEEEEeCCCeEEC
Confidence 000000 00 000 011 11122222221 0 1112223 4567789999
Q ss_pred hHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccCcChhhhhhhhcCCCCCe
Q 008503 167 DSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQPM 246 (563)
Q Consensus 167 ~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~~s~~l~~~~g~~~~~~ 246 (563)
|..++..|++.+++.|++|+.+++|+++... ..+.|.. .. .++.|+.||+|+|.|+..+...++..
T Consensus 182 P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~~----~~~~v~t-----~~-g~v~A~~VV~Atga~s~~l~~~~~~~---- 247 (460)
T TIGR03329 182 PGLLVRGLRRVALELGVEIHENTPMTGLEEG----QPAVVRT-----PD-GQVTADKVVLALNAWMASHFPQFERS---- 247 (460)
T ss_pred HHHHHHHHHHHHHHcCCEEECCCeEEEEeeC----CceEEEe-----CC-cEEECCEEEEcccccccccChhhcCe----
Confidence 9999999999999999999999999999742 2233432 22 36999999999999998776654432
Q ss_pred eecCCceEEEecCCcCCCC------cccccccCCCCc--EEEEeec-CCcEEeeecCCCC--CCCCC--CCCCHHHHHHH
Q 008503 247 ICPSSGVHIVLPDYYSPEG------MGLIVPKTKDGR--VVFMLPW-LGRTVAGTTDSDT--VITLL--PEPHEDEIQFI 313 (563)
Q Consensus 247 v~~~~G~~~~~~~~~~~~~------~~~~~~~~~~g~--~~~~~P~-~g~~~iG~t~~~~--~~~~~--~~~~~~~~~~l 313 (563)
+.|.++++++... ..+.. ....+ .+.+ +.|+.|. +|.+++|...... ....+ ........+.|
T Consensus 248 ~~p~~~~~~~t~p-l~~~~~~~~~~~~~~~---~d~~~~~~y~r~~~dgrll~G~~~~~~~~~~~~~~~~~~~~~~~~~l 323 (460)
T TIGR03329 248 IAIVSSDMVITEP-APDLLAATGLDHGTSV---LDSRIFVHYYRSTPDGRLMLGKGGNTFAYGGRMLPVFNQPSPYEALL 323 (460)
T ss_pred EEEeccceEecCC-CcHHHHhhcCCCCceE---ecchhhhhheeECCCCcEEEcCCccccccCcccccccCCchHHHHHH
Confidence 5666666554432 11100 01111 1222 2456665 4567888543211 11111 11222335678
Q ss_pred HHHHhhhccCCCCCCCcccceeeeeecccCCCCCCCCCccccceEeec--CCCeEEEec--C-hhhhhHHHHHHHHHHHH
Q 008503 314 LDAISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCED--FPGLVTITG--G-KWTTYRSMAEDAVNAAI 388 (563)
Q Consensus 314 l~~~~~~~~~~l~~~~v~~~~aG~rp~~~d~~~~~~~~~~~~~~i~~~--~~gl~~~~G--g-~~t~a~~~Ae~v~~~i~ 388 (563)
.+.+.++| |.+....+.+.|+|++|+++|.. |+|+.. .+|++.++| | +++.++.+|+.+++++.
T Consensus 324 ~~~~~~~f-P~L~~~~i~~~W~G~~~~t~D~~----------P~iG~~~~~~gl~~a~G~~G~Gv~~a~~~G~~lA~li~ 392 (460)
T TIGR03329 324 TRSLRKFF-PALAEVPIAASWNGPSDRSVTGL----------PFFGRLNGQPNVFYGFGYSGNGVAPSRMGGQILSSLVL 392 (460)
T ss_pred HHHHHHhC-CCcCCCeeeEEEeceeCCCCCCC----------ceeeeecCCCCEEEEeCcCCCChhHHHHHHHHHHHHhc
Confidence 88899999 68888889999999999999864 888853 479999998 3 69999999999999886
Q ss_pred H
Q 008503 389 K 389 (563)
Q Consensus 389 ~ 389 (563)
.
T Consensus 393 g 393 (460)
T TIGR03329 393 G 393 (460)
T ss_pred C
Confidence 4
No 18
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=99.92 E-value=7.9e-25 Score=207.95 Aligned_cols=310 Identities=20% Similarity=0.279 Sum_probs=214.2
Q ss_pred CCCccEEEECCchHHHHHHHHHHHC--CCcEEEEecc-CCCCCCccCCCCccccchhhHHHHhh-ccCcccHHHHHHH--
Q 008503 69 SNPLDILVIGGGATGCGVALDAATR--GLRVGLVERE-DFSSGTSSRSTKLIHGGVRYLEKAVF-NLDYGQLKLVFHA-- 142 (563)
Q Consensus 69 ~~~~DVvIIGaGiaG~~~A~~la~~--G~~V~llEk~-~~~~g~s~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~-- 142 (563)
...||+|||||||+|++.|++|.-+ +++|.|+|+. +++..+|++|++++|.|+.|-+..++ .+..+...+.++.
T Consensus 46 ~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~hqSghNSgViHaGIYY~P~SLKAklCV~G~~LlY~yc~ 125 (453)
T KOG2665|consen 46 KERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAVHQSGHNSGVIHAGIYYKPGSLKAKLCVEGRELLYEYCD 125 (453)
T ss_pred cccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhceeecccccceeeeeeeeCCcccchhhhhccHHHHHHHhh
Confidence 6789999999999999999999998 9999999998 68999999999999999988654321 1111222222222
Q ss_pred --------------------------HHHhhhc----------------ccC---CcceEEEecCceechHHHHHHHHHH
Q 008503 143 --------------------------LEERKQA----------------KDR---SLKGAVVYYDGQMNDSRLNVGLALT 177 (563)
Q Consensus 143 --------------------------l~~~~~~----------------~~~---~~~~~~~~~~~~~~~~~l~~~l~~~ 177 (563)
+.+++.. ..+ .+...++++.|.+|-..++..+.+.
T Consensus 126 e~~IpyKk~GKLIVAt~~~EiprLd~L~~~g~qN~v~glrmieg~ei~~~EP~crgvkAl~sPhtGIvD~~~v~ls~~ed 205 (453)
T KOG2665|consen 126 EKKIPYKKTGKLIVATESEEIPRLDALMHRGTQNGVPGLRMIEGSEIMEMEPYCRGVKALLSPHTGIVDWGSVTLSFGED 205 (453)
T ss_pred hcCCChhhcceEEEEeChhhcchHHHHHHhhhhcCCCCeeeeccchhhhcChhhhhhhhhcCCCcceeehHHHHHHHHHH
Confidence 2222221 112 2233457889999999999999999
Q ss_pred HHHCCCEEEcCcEEEEEEEcCCCCc-EEEEEEEECCCCcEEEEEeCeEEEccCcChhhhhhhhcCCCCCeeecCCceEEE
Q 008503 178 AALAGAAVLNHAEVISLIKDEASNR-IIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQPMICPSSGVHIV 256 (563)
Q Consensus 178 a~~~G~~i~~~~~v~~l~~~~~~g~-v~gv~~~d~~~g~~~~i~A~~VI~AtG~~s~~l~~~~g~~~~~~v~~~~G~~~~ 256 (563)
+...|..+.++.++..+..+.+ +. -.-+++ .+++..+++++.||-|+|..++.+....|.+..+.+.|.+|.++.
T Consensus 206 F~~~gg~i~~n~~l~g~~~n~~-~~~~Ypivv---~ngk~ee~r~~~~vtc~gl~sdr~aa~sgc~~dPriVpfrG~yll 281 (453)
T KOG2665|consen 206 FDFMGGRIYTNFRLQGIAQNKE-ATFSYPIVV---LNGKGEEKRTKNVVTCAGLQSDRCAALSGCELDPRIVPFRGEYLL 281 (453)
T ss_pred HHHhcccccccceeccchhccC-CCCCCceEE---ecCccceeEEeEEEEeccccHhHHHHHhCCCCCCeeeeccchhhh
Confidence 9999999999999999987653 21 111333 345567899999999999999999999998877789999999987
Q ss_pred ecCCcCCCCcccccccCCCCcEEE----Eeec-CCcEEeeecCCC--------------CC---------------CCCC
Q 008503 257 LPDYYSPEGMGLIVPKTKDGRVVF----MLPW-LGRTVAGTTDSD--------------TV---------------ITLL 302 (563)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~g~~~~----~~P~-~g~~~iG~t~~~--------------~~---------------~~~~ 302 (563)
+.......-++-++| ..|.|+-| +.|+ ++.+.+|+...- .+ ...+
T Consensus 282 l~~ek~h~vk~niyP-vpd~RFpflGvhftPrm~g~iwlgpnavLa~kregy~~g~i~~~~~~e~i~~sg~~k~~~k~f~ 360 (453)
T KOG2665|consen 282 LKPEKLHLVKGNIYP-VPDPRFPFLGVHFTPRMDGSIWLGPNAVLAVKREGYLNGDISFGDLVEWIEYSGDTKLASKKFD 360 (453)
T ss_pred cChHHhccccCceee-CCCCCCccccccccCcCCCceecCCCceEEEEEEeeccccccccchhhheecCchHHHHHhhcC
Confidence 755433322233333 33333322 2332 233334432110 00 0112
Q ss_pred CCCCHHHHHHHH----HHHhhhccCCCCCCCcccceeeeeecccCCCCCCCCCccccceEeec----CCCeEEEecC---
Q 008503 303 PEPHEDEIQFIL----DAISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCED----FPGLVTITGG--- 371 (563)
Q Consensus 303 ~~~~~~~~~~ll----~~~~~~~~~~l~~~~v~~~~aG~rp~~~d~~~~~~~~~~~~~~i~~~----~~gl~~~~Gg--- 371 (563)
..+++..-+.++ ..+++++ |+++..++.+..+|+|+...|++ .++..||++... .++++++.+.
T Consensus 361 ygv~e~~k~~f~~aqvk~lqkyi-Pdlk~~di~rGpaGvRaqald~~----gnlv~DFVfd~g~g~~~p~llh~rnapSP 435 (453)
T KOG2665|consen 361 YGVNEMYKEKFIAAQVKELQKYI-PDLKDSDIERGPAGVRAQALDGD----GNLVDDFVFDGGEGHLVPRLLHVRNAPSP 435 (453)
T ss_pred cccchHhhhhhhhhhhHHHHHhC-ccccccccccCcccccchhccCC----CCCchheEEecCccccccceEEecCCCCc
Confidence 223333333333 7788888 89999999999999997666643 345577888653 3789998884
Q ss_pred hhhhhHHHHHHHHHHHH
Q 008503 372 KWTTYRSMAEDAVNAAI 388 (563)
Q Consensus 372 ~~t~a~~~Ae~v~~~i~ 388 (563)
+.|++.+||+++++.+.
T Consensus 436 gaTSSlAIa~mIa~k~~ 452 (453)
T KOG2665|consen 436 GATSSLAIAKMIADKFL 452 (453)
T ss_pred cchhhHHHHHHHHHHhc
Confidence 68999999999999764
No 19
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=99.92 E-value=1.2e-23 Score=218.98 Aligned_cols=282 Identities=18% Similarity=0.166 Sum_probs=183.2
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCcccc-chh------h-------HHHHhhc--cCc--
Q 008503 72 LDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHG-GVR------Y-------LEKAVFN--LDY-- 133 (563)
Q Consensus 72 ~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~-g~~------~-------~~~~~~~--~~~-- 133 (563)
|||+|||||++|+++|++|+++|++|+|||++..+.|+|++|.|+++. +.. + +.+...+ +.+
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~~~gaS~~~~G~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~ 80 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSRAQGASVRNFGQVWPTGQAPGPAWDRARRSREIWLELAAKAGIWVRE 80 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCCCcccccCceEEecCCCCccHHHHHHHHHHHHHHHHHHcCCCEEe
Confidence 699999999999999999999999999999998888999999988753 111 0 1111111 111
Q ss_pred ----------ccHHHHHH---HHHHhhh-c--------------c-cCCcceEE-EecCceechHHHHHHHHHHHHHC-C
Q 008503 134 ----------GQLKLVFH---ALEERKQ-A--------------K-DRSLKGAV-VYYDGQMNDSRLNVGLALTAALA-G 182 (563)
Q Consensus 134 ----------~~~~~~~~---~l~~~~~-~--------------~-~~~~~~~~-~~~~~~~~~~~l~~~l~~~a~~~-G 182 (563)
.+...+.+ .....+. . . .+.+.+++ .+.++++||..++..|.+.+.+. |
T Consensus 81 ~g~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~l~~~~~~~~~~~~~~g~v~p~~~~~~l~~~~~~~~G 160 (365)
T TIGR03364 81 NGSLHLARTEEELAVLEEFAATREPAEYRVELLTPAEVAAKFPALRLDGLRGGLHSPDELRVEPREAIPALAAYLAEQHG 160 (365)
T ss_pred CCEEEEeCCHHHHHHHHHHHHhhhhcCCCeEEECHHHHHHhCCCCCccCceEEEEcCCCeeECHHHHHHHHHHHHHhcCC
Confidence 01111111 1111110 0 1 13444454 45679999999999999988775 9
Q ss_pred CEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccCcChhhhhhhhcCCCCCeeecCCceEEEecCCcC
Q 008503 183 AAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQPMICPSSGVHIVLPDYYS 262 (563)
Q Consensus 183 ~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~~s~~l~~~~g~~~~~~v~~~~G~~~~~~~~~~ 262 (563)
++++++++|++|.. + .|.. ..+ .++|+.||+|+|.|+..+.+..+... .+.|.+|+.+.++....
T Consensus 161 v~i~~~t~V~~i~~----~---~v~t---~~g---~i~a~~VV~A~G~~s~~l~~~~~~~~--~~~p~~~q~~~~~p~~~ 225 (365)
T TIGR03364 161 VEFHWNTAVTSVET----G---TVRT---SRG---DVHADQVFVCPGADFETLFPELFAAS--GVRRCKLQMMRTAPQPR 225 (365)
T ss_pred CEEEeCCeEEEEec----C---eEEe---CCC---cEEeCEEEECCCCChhhhCcchhhcc--CcceEEEEeeeccCCCC
Confidence 99999999999853 2 2322 222 47899999999999988765544333 37888998877653211
Q ss_pred -CCCcc------------ccc---------------cc-CCCCcEEEEeec-CCcEEeeecCCCCCCCCCCCCCHHHHHH
Q 008503 263 -PEGMG------------LIV---------------PK-TKDGRVVFMLPW-LGRTVAGTTDSDTVITLLPEPHEDEIQF 312 (563)
Q Consensus 263 -~~~~~------------~~~---------------~~-~~~g~~~~~~P~-~g~~~iG~t~~~~~~~~~~~~~~~~~~~ 312 (563)
+.... +.. +. ...+..+|+.|. +|.+++|.+.+.... .+...+.+..+.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~iG~~~~~~~~-~~~~~~~~~~~~ 304 (365)
T TIGR03364 226 LPLGTALLTGLSLRRYEGFAELPSAAALKARLQEEEPELLEWGIHLMVSQNPDGELIIGDSHEYGLA-PDPFDDEEIDNL 304 (365)
T ss_pred CcCCccccccceeeechhHhhCcchHHHHhhhcccCchhhhcCeEEEEEECCCCCEEecCcccccCC-CCCcchHHHHHH
Confidence 00000 000 00 012334788897 467889987643211 111223344456
Q ss_pred HHHHHhhhccCCCCCCCcccceeeeeecccCCCCCCCCCccccceEeecCCCeEEEecC---hhhhhHHHHH
Q 008503 313 ILDAISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCEDFPGLVTITGG---KWTTYRSMAE 381 (563)
Q Consensus 313 ll~~~~~~~~~~l~~~~v~~~~aG~rp~~~d~~~~~~~~~~~~~~i~~~~~gl~~~~Gg---~~t~a~~~Ae 381 (563)
+.+.+.+++ .+...++.+.|+|+||.++|.. +++....+|++.++|. +++.+|.+|+
T Consensus 305 l~~~~~~~~--~l~~~~~~~~w~G~r~~t~d~~----------~v~~~~~~g~~~a~G~~g~G~~~ap~~~~ 364 (365)
T TIGR03364 305 ILAEAKTIL--GLPDLDIVERWQGVYASSPPAP----------IFLERPDDGVTVVVVTSGAGMTLSFGLAE 364 (365)
T ss_pred HHHHHHHhc--CCCCCceEEEEeEEecCCCCCC----------ceecCCCCCeEEEEecCCCcccccccccC
Confidence 777777765 5777789999999999997632 6665445899999882 6899998886
No 20
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=99.92 E-value=6.5e-23 Score=215.18 Aligned_cols=298 Identities=22% Similarity=0.287 Sum_probs=204.1
Q ss_pred CCCccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccchhh-----------------HHHHhhcc
Q 008503 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRY-----------------LEKAVFNL 131 (563)
Q Consensus 69 ~~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~~~-----------------~~~~~~~~ 131 (563)
..++||+|||||++|+++|++|+++|.+|+|+|++..+.|+|+++++.+...... ++.....+
T Consensus 2 ~~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (387)
T COG0665 2 SMKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAGGGAAGRNAGGILAPWASPGGELEVRPLADLSLALWRELSEEL 81 (387)
T ss_pred CCcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCccCCcchhcchhhhccccccCCccchhhhhhHHHHHHHHHHHHHh
Confidence 3468999999999999999999999999999999988888999987766432111 00000000
Q ss_pred C----c------------c-----cHHHHHHHHHHhhh----c-----------ccCC-cceE-EEecCceechHHHHHH
Q 008503 132 D----Y------------G-----QLKLVFHALEERKQ----A-----------KDRS-LKGA-VVYYDGQMNDSRLNVG 173 (563)
Q Consensus 132 ~----~------------~-----~~~~~~~~l~~~~~----~-----------~~~~-~~~~-~~~~~~~~~~~~l~~~ 173 (563)
. + . ......+.+..... . .... +.++ +.+.++.++|..++..
T Consensus 82 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~a~~~~~~~~~~p~~~~~~ 161 (387)
T COG0665 82 GTGAGLRRRGLLDLAAREGLKGLAQLERLAAELEAAGEDAELLDAAEAAELEPALGPDFVCGGLFDPTGGHLDPRLLTRA 161 (387)
T ss_pred CcchhcchhhhhhhhhccccchHHHHHHHHHHHHhcCCCceeCCHHHHHHhCCCCCcccceeeEecCCCCcCCHHHHHHH
Confidence 0 0 0 01111111111110 0 1111 3333 4677899999999999
Q ss_pred HHHHHHHCC-CEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccCcChhhhhhhhcCCCCCeeecCCc
Q 008503 174 LALTAALAG-AAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQPMICPSSG 252 (563)
Q Consensus 174 l~~~a~~~G-~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~~s~~l~~~~g~~~~~~v~~~~G 252 (563)
+.+.+.++| ..+..++.+..+..+ . ++++|.. .. .++.|+.||+|+|.|+..+..+.+ ..+..+.|.++
T Consensus 162 l~~~~~~~G~~~~~~~~~~~~~~~~--~-~~~~v~t-----~~-g~i~a~~vv~a~G~~~~~l~~~~~-~~~~~~~p~~~ 231 (387)
T COG0665 162 LAAAAEELGVVIIEGGTPVTSLERD--G-RVVGVET-----DG-GTIEADKVVLAAGAWAGELAATLG-ELPLPLRPVRG 231 (387)
T ss_pred HHHHHHhcCCeEEEccceEEEEEec--C-cEEEEEe-----CC-ccEEeCEEEEcCchHHHHHHHhcC-CCcCccccccc
Confidence 999999999 566668999988765 1 4455543 22 349999999999999999988887 33334899999
Q ss_pred eEEEecCCcCCCCcc---cccccCCCCcEEEEeec-CCcEEeeecCCCCCCCCCCCCCHH--HHHHHHHHHhhhccCCCC
Q 008503 253 VHIVLPDYYSPEGMG---LIVPKTKDGRVVFMLPW-LGRTVAGTTDSDTVITLLPEPHED--EIQFILDAISDYLNVKVR 326 (563)
Q Consensus 253 ~~~~~~~~~~~~~~~---~~~~~~~~g~~~~~~P~-~g~~~iG~t~~~~~~~~~~~~~~~--~~~~ll~~~~~~~~~~l~ 326 (563)
+++.++......... ... .......|+.|. ++..++|.+..... ..+...... .+..+++.+.+++ |.+.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~y~~~~~~g~~~~g~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~-P~l~ 307 (387)
T COG0665 232 QALTTEPPEGLLADGLAPVVL--VVDDGGGYIRPRGDGRLRVGGTDEEGG-DDPSDPEREDLVIAELLRVARALL-PGLA 307 (387)
T ss_pred eEEEecCCCccccccccceEE--EecCCceEEEEcCCCcEEEeecccccC-CCCccccCcchhHHHHHHHHHHhC-cccc
Confidence 999887543211111 111 112234577775 67888888876532 111112222 3678999999999 7888
Q ss_pred CCCcccceeeeeecc-cCCCCCCCCCccccceEee-c-CCCeEEEecC---hhhhhHHHHHHHHHHHHHc
Q 008503 327 RTDVLSAWSGIRPLA-MDPSAKNTESISRDHVVCE-D-FPGLVTITGG---KWTTYRSMAEDAVNAAIKS 390 (563)
Q Consensus 327 ~~~v~~~~aG~rp~~-~d~~~~~~~~~~~~~~i~~-~-~~gl~~~~Gg---~~t~a~~~Ae~v~~~i~~~ 390 (563)
...+.+.|+|.||.+ +|.. |+|+. . .+|++.++|. ++|.++.+|+.+++++...
T Consensus 308 ~~~~~~~w~g~~~~t~pd~~----------P~iG~~~~~~~l~~a~G~~~~G~~~~p~~g~~lA~li~g~ 367 (387)
T COG0665 308 DAGIEAAWAGLRPPTTPDGL----------PVIGRAAPLPNLYVATGHGGHGFTLAPALGRLLADLILGG 367 (387)
T ss_pred ccccceeeeccccCCCCCCC----------ceeCCCCCCCCEEEEecCCCcChhhccHHHHHHHHHHcCC
Confidence 888889999999987 8854 88883 3 4799999993 6999999999999999864
No 21
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=99.91 E-value=3.4e-22 Score=213.46 Aligned_cols=312 Identities=14% Similarity=0.151 Sum_probs=198.7
Q ss_pred ccEEEECCchHHHHHHHHHHHC--CCcEEEEeccC-CCCCCcc--CCCCccccch---hhHH------------------
Q 008503 72 LDILVIGGGATGCGVALDAATR--GLRVGLVERED-FSSGTSS--RSTKLIHGGV---RYLE------------------ 125 (563)
Q Consensus 72 ~DVvIIGaGiaG~~~A~~la~~--G~~V~llEk~~-~~~g~s~--~~~~~~~~g~---~~~~------------------ 125 (563)
+||+||||||+|+++|++|+++ |++|+|+||.+ ++.++|+ +|+|.+|.+. .|-.
T Consensus 1 ~DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk~~~~a~~~S~~~~naG~~hag~~e~~y~~~~~~~~~~l~~a~~~~~~ 80 (483)
T TIGR01320 1 TDVVLIGAGIMSATLGVLLRELEPNWSITLIERLDAVAAESSNPWNNAGTGHSALCELNYTPEMADGSIDIAKAVGINEQ 80 (483)
T ss_pred CcEEEECchHHHHHHHHHHHHhCCCCeEEEEEcCCcchhhhCCCCCcccccccchhhccCCCccCCCchhHHHHHHHHHH
Confidence 6999999999999999999997 99999999964 7888888 5888887765 1111
Q ss_pred -----HHh---hc---c-C----------------cccHHHH---HHHHHHhhh-------c-----------cc-----
Q 008503 126 -----KAV---FN---L-D----------------YGQLKLV---FHALEERKQ-------A-----------KD----- 151 (563)
Q Consensus 126 -----~~~---~~---~-~----------------~~~~~~~---~~~l~~~~~-------~-----------~~----- 151 (563)
+.+ .+ + . ..+...+ .+.+.+.+. . ..
T Consensus 81 ~~~s~~~~~~l~~~g~~~~~~~~~~~~G~L~va~~e~e~~~L~~~~~~~~~~g~~~~~~~~l~~~el~~~eP~l~~~r~~ 160 (483)
T TIGR01320 81 FQVSRQFWAHLVEEGILTDPKSFINPVPHVSFVHGSDGVAYLKKRYEALKGHPLFEGMEFSEDPATFAEWLPLMAAGRDF 160 (483)
T ss_pred HHHHHHHHHHHHHcCCCCChhhhccCCCeEEEEEChHHHHHHHHHHHHHhcCCCccCceEeCCHHHHHHhCCCcccCCCC
Confidence 011 00 0 0 0111111 112222211 0 11
Q ss_pred CCcceE-EEecCceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccCc
Q 008503 152 RSLKGA-VVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGP 230 (563)
Q Consensus 152 ~~~~~~-~~~~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~ 230 (563)
+...++ +.+.++.+||..++.+|.+.+.+.|++++++++|+++..+++ +. +.|.+.+..++...+++|++||+|+|.
T Consensus 161 ~~~~gAl~~p~~g~Vdp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~-~~-v~v~~~~~~~g~~~~i~A~~VV~AAG~ 238 (483)
T TIGR01320 161 SEPVAANWAAEGTDVDFGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSD-GS-WTVTVKNTRTGGKRTLNTRFVFVGAGG 238 (483)
T ss_pred CCceEEEEeCCCEEECHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCC-Ce-EEEEEeeccCCceEEEECCEEEECCCc
Confidence 112233 467788999999999999999999999999999999987643 33 334444323444457999999999999
Q ss_pred ChhhhhhhhcCCC--CCeeecCCceEEEecCC-cCCCCcccccccCCCCcEEEEeecC------CcE--EeeecCC--CC
Q 008503 231 FCDSVRKLADQNV--QPMICPSSGVHIVLPDY-YSPEGMGLIVPKTKDGRVVFMLPWL------GRT--VAGTTDS--DT 297 (563)
Q Consensus 231 ~s~~l~~~~g~~~--~~~v~~~~G~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~P~~------g~~--~iG~t~~--~~ 297 (563)
|++.+.++.|... ...+.|.+|+++.++.. ........+++....+.-.+.+|.. |.. ++||+.. +.
T Consensus 239 ~s~~La~~~Gi~~~~~~~i~P~~Gq~l~l~~~~~~~~~~~~IY~v~~p~~p~~~Vph~Dtr~i~G~~~~~~GP~A~~~~~ 318 (483)
T TIGR01320 239 GALPLLQKSGIPEVKGFAGFPVSGLFLRCGNPELTEQHRAKVYGQASVGAPPMSVPHLDTRVVDGKKWLLFGPYAGWSPK 318 (483)
T ss_pred chHHHHHHcCCCcCCCCceeeeeEEEEEeCCHHHHhhcCeEEEecCCCCCCCcEEecCCCccccCCEEEEECcCCCcchH
Confidence 9999999988752 23589999999998754 2222223344422222214456532 333 4899887 31
Q ss_pred CCCC----C--CCCCHHHH-------------------------HHHHHHHhhhccCCCCCCCcccceeeeeecccCCCC
Q 008503 298 VITL----L--PEPHEDEI-------------------------QFILDAISDYLNVKVRRTDVLSAWSGIRPLAMDPSA 346 (563)
Q Consensus 298 ~~~~----~--~~~~~~~~-------------------------~~ll~~~~~~~~~~l~~~~v~~~~aG~rp~~~d~~~ 346 (563)
...+ + ...+..++ ...++.+++++ |.++..|+....+|+|+...+.+
T Consensus 319 ~~reg~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~-p~~~~~d~~~~~~GiR~Q~i~~~- 396 (483)
T TIGR01320 319 FLKHGSILDLPLSIRPDNLLSMLGVGLTEMDLTKYLIGQLRKSEEERVSALREFY-PEAIDSDWELIVAGQRVQVIKKD- 396 (483)
T ss_pred hhcCCchhHHhhcCCHhhHHHHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHhC-CCCCHHHcEEccCceEEEEEecC-
Confidence 1111 1 11111111 12345577787 78888899999999999887532
Q ss_pred CCC--CCcc-ccceEeecCCCeEEE-ec--ChhhhhHHHHHHHHHHHH
Q 008503 347 KNT--ESIS-RDHVVCEDFPGLVTI-TG--GKWTTYRSMAEDAVNAAI 388 (563)
Q Consensus 347 ~~~--~~~~-~~~~i~~~~~gl~~~-~G--g~~t~a~~~Ae~v~~~i~ 388 (563)
+.. ..+. .+++|.. .++.+++ .+ -+.|++..+|+++++...
T Consensus 397 ~~~~~g~l~~g~~~i~~-~~~~~~~l~~~SPgaTss~~i~~~v~~~~~ 443 (483)
T TIGR01320 397 PEKGGGVLEFGTTLIAD-ADGSIAGLLGASPGASTAVSIMLDLLERCF 443 (483)
T ss_pred CCCCcCEEecCCeEEEC-CCCeEEEecCCCchHHhhHHHHHHHHHHHh
Confidence 111 1222 2445543 4566664 34 379999999999998664
No 22
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=99.90 E-value=1.4e-21 Score=208.89 Aligned_cols=317 Identities=14% Similarity=0.103 Sum_probs=199.6
Q ss_pred CCCccEEEECCchHHHHHHHHHHHC--CCcEEEEeccC-CCCCCcc--CCCCccccch---hhHH---------------
Q 008503 69 SNPLDILVIGGGATGCGVALDAATR--GLRVGLVERED-FSSGTSS--RSTKLIHGGV---RYLE--------------- 125 (563)
Q Consensus 69 ~~~~DVvIIGaGiaG~~~A~~la~~--G~~V~llEk~~-~~~g~s~--~~~~~~~~g~---~~~~--------------- 125 (563)
+..+||+||||||+|+++|++|+++ |++|+||||.+ ++.++|+ +|+|.+|.+. .|..
T Consensus 3 ~~~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~~a~~sS~~~~NaG~ghag~~e~~y~~~~~~g~~~~~~a~~~ 82 (494)
T PRK05257 3 ESKTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLDGVALESSNGWNNAGTGHSALCELNYTPEKADGSIDISKAVKI 82 (494)
T ss_pred CccceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCchhhhcCCCcCccccccccchhhcCCCCCCCCchhHHHHHHH
Confidence 4568999999999999999999985 89999999985 5777776 6888887662 1111
Q ss_pred --------HHh----h-cc--Cc----------------ccHHH---HHHHHHHhhhc------------------cc--
Q 008503 126 --------KAV----F-NL--DY----------------GQLKL---VFHALEERKQA------------------KD-- 151 (563)
Q Consensus 126 --------~~~----~-~~--~~----------------~~~~~---~~~~l~~~~~~------------------~~-- 151 (563)
+.+ . .+ .. .+... ..+.+.+++.. ..
T Consensus 83 ~~~~~~s~~~~~~l~~~g~~~~~~~~~~~~G~l~la~~e~e~~~l~~~~~~~~~~g~~~~~~~~~d~~el~e~eP~l~~~ 162 (494)
T PRK05257 83 NEQFQISRQFWAYLVEKGVLPDPRSFINPVPHMSFVWGEDNVAFLKKRYEALKANPLFAGMEFSEDPAQIKEWAPLMMEG 162 (494)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCcccccccCCeEEEEECHHHHHHHHHHHHHHHhCCCCCCCEEeCCHHHHHHhCcccccC
Confidence 110 0 00 00 00111 11122222210 00
Q ss_pred ---CCcc-eEEEecCceechHHHHHHHHHHHHHCC-CEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEE
Q 008503 152 ---RSLK-GAVVYYDGQMNDSRLNVGLALTAALAG-AAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVN 226 (563)
Q Consensus 152 ---~~~~-~~~~~~~~~~~~~~l~~~l~~~a~~~G-~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~ 226 (563)
+... +.+.+.++.+|+..++..|.+.+++.| ++++++++|+++..+++ +. +.|.+.+..+|+..+++|++||+
T Consensus 163 r~~~~~~~Al~~p~~g~Vd~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~d-g~-~~v~~~~~~~G~~~~i~A~~VVv 240 (494)
T PRK05257 163 RDPSQKVAATRIEIGTDVNFGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDD-GS-WTVTVKDLKTGEKRTVRAKFVFI 240 (494)
T ss_pred CCCCcceeEEEcCCceEECHHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCC-CC-EEEEEEEcCCCceEEEEcCEEEE
Confidence 1123 334677889999999999999999887 89999999999988654 33 34544432345434699999999
Q ss_pred ccCcChhhhhhhhcCCC--CCeeecCCceEEEecCCcCC-CCcccccccCCCCcEEEEeec------CCc--EEeeecCC
Q 008503 227 AAGPFCDSVRKLADQNV--QPMICPSSGVHIVLPDYYSP-EGMGLIVPKTKDGRVVFMLPW------LGR--TVAGTTDS 295 (563)
Q Consensus 227 AtG~~s~~l~~~~g~~~--~~~v~~~~G~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~P~------~g~--~~iG~t~~ 295 (563)
|+|.|++.+.++.|... ...+.|.+|++++++.+... .....+++...-+.-.|.+|+ .|. +.+||+..
T Consensus 241 aAGg~s~~L~~~~Gi~~~~~~~i~PvrGq~l~~~~~~~v~~~~~kvY~~~~~~~P~~~vPh~dtr~i~G~~~~~~GP~A~ 320 (494)
T PRK05257 241 GAGGGALPLLQKSGIPEAKGYGGFPVSGQFLVCENPEVVAQHHAKVYGKASVGAPPMSVPHLDTRVIDGKRSLLFGPFAG 320 (494)
T ss_pred CCCcchHHHHHHcCCCccCCCCeeeeeEEEEEcCCHHHHhcCCeEEecCCCCCCCCCCCCCCCCcEECCceeEEECCCcc
Confidence 99999999999888752 23488999999999754221 111113432111222344553 232 67787755
Q ss_pred CCCCCCCCCCCHH--------------------H--------------HHHHHHHHhhhccCCCCCCCcccceeeeeecc
Q 008503 296 DTVITLLPEPHED--------------------E--------------IQFILDAISDYLNVKVRRTDVLSAWSGIRPLA 341 (563)
Q Consensus 296 ~~~~~~~~~~~~~--------------------~--------------~~~ll~~~~~~~~~~l~~~~v~~~~aG~rp~~ 341 (563)
..... ....+.. . -...++.+++++ |.++..++....+|+|+..
T Consensus 321 ~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~d~~~~~aG~R~Q~ 398 (494)
T PRK05257 321 FSTKF-LKNGSLLDLFSSVRPSNLLPMLAVGLDNFDLTKYLISQVMLSDEDRFEALREFY-PNAKPEDWELIVAGQRVQI 398 (494)
T ss_pred ccHHh-ccCCCHHHHHHhcCccccHHHHHHHhhhhHHHHHHHHHHhhCHHHHHHHHHHhC-CCCCHHHceEcCCceEeEE
Confidence 31100 0000100 0 123455677887 7888888888899999988
Q ss_pred cCCCCCCCCCccccceEeecCCCeEEEe-c--ChhhhhHHHHHHHHHHHHH
Q 008503 342 MDPSAKNTESISRDHVVCEDFPGLVTIT-G--GKWTTYRSMAEDAVNAAIK 389 (563)
Q Consensus 342 ~d~~~~~~~~~~~~~~i~~~~~gl~~~~-G--g~~t~a~~~Ae~v~~~i~~ 389 (563)
.+.+.....++..++.+....+|.+++. | -+.|++..+|+++++.+..
T Consensus 399 i~~~~~~~g~L~~~~~~i~~~~~~~~~l~~~SPgat~s~~i~~~v~~~~~~ 449 (494)
T PRK05257 399 IKKDPKKGGVLQFGTEVVSSADGSIAALLGASPGASTAVPIMLEVLEKCFP 449 (494)
T ss_pred EccCCCCCCEEECCcEEEecCCCeEEEEcCCCchHHHHHHHHHHHHHHhCH
Confidence 7543112245666653444455766543 4 3799999999999987643
No 23
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=99.89 E-value=1.9e-21 Score=200.14 Aligned_cols=272 Identities=21% Similarity=0.261 Sum_probs=190.5
Q ss_pred HHHHHCCCcEEEEeccCCCCCCccCCCCccccch-------hhH----------HHHhh--------ccCcc--------
Q 008503 88 LDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGV-------RYL----------EKAVF--------NLDYG-------- 134 (563)
Q Consensus 88 ~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~-------~~~----------~~~~~--------~~~~~-------- 134 (563)
++|+++|.+|+||||+.++.|+|++|+|+++... .+. ++... ++.+.
T Consensus 1 ~~La~~G~~V~vle~~~~~~gaS~~~~g~~~~~~~~~~~~~~~~~l~~~s~~~~~~l~~~~~~~~~~~~~~~~~G~l~~a 80 (337)
T TIGR02352 1 WELAKRGHSVTLFDRDPMGGGASWAAAGMLAPHAECEYAEDPLFDLALESLRLYPEWLEALKELTGLDTGYHQCGTLVVA 80 (337)
T ss_pred ChHHHCCCceEEEcCCCCCcccchhhhcCcccccccccCCchHHHHHHHHHHHHHHHHHHHHHhcCCCcCeEEccEEEEe
Confidence 4799999999999999888999999999886422 111 00000 01110
Q ss_pred ----cHHH---HHHHHHHhhhc---------------ccCCcceEE-EecCceechHHHHHHHHHHHHHCCCEEEcCcEE
Q 008503 135 ----QLKL---VFHALEERKQA---------------KDRSLKGAV-VYYDGQMNDSRLNVGLALTAALAGAAVLNHAEV 191 (563)
Q Consensus 135 ----~~~~---~~~~l~~~~~~---------------~~~~~~~~~-~~~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v 191 (563)
+... ..+...+.+.. ..+.+.+++ .+.+|.++|..++..+++.+.++|++++++++|
T Consensus 81 ~~~~~~~~l~~~~~~~~~~~~~~~~l~~~e~~~~~p~l~~~~~~g~~~~~~g~v~p~~l~~~l~~~~~~~g~~~~~~~~v 160 (337)
T TIGR02352 81 FDEDDVEHLRQLADLQSATGMEVEWLSGRALRRLEPYLSGGIRGAVFYPDDAHVDPRALLKALEKALEKLGVEIIEHTEV 160 (337)
T ss_pred CCHHHHHHHHHHHHHHHhcCCceEEcCHHHHHHhCCCCCcccceEEEcCCCceEChHHHHHHHHHHHHHcCCEEEccceE
Confidence 0001 11111111110 123334454 456899999999999999999999999999999
Q ss_pred EEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccCcChhhhhhhhcCCCCCeeecCCceEEEecCCcCCC-Cccccc
Q 008503 192 ISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQPMICPSSGVHIVLPDYYSPE-GMGLIV 270 (563)
Q Consensus 192 ~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~~s~~l~~~~g~~~~~~v~~~~G~~~~~~~~~~~~-~~~~~~ 270 (563)
+++..++ +++++|.. .. +.++|+.||+|+|+|+..+.. .+ ++|.+|+++.++....+. ...+..
T Consensus 161 ~~i~~~~--~~~~~v~~-----~~-g~~~a~~vV~a~G~~~~~l~~-----~~--~~~~~g~~~~~~~~~~~~~~~~~~~ 225 (337)
T TIGR02352 161 QHIEIRG--EKVTAIVT-----PS-GDVQADQVVLAAGAWAGELLP-----LP--LRPVRGQPLRLEAPAVPLLNRPLRA 225 (337)
T ss_pred EEEEeeC--CEEEEEEc-----CC-CEEECCEEEEcCChhhhhccc-----CC--ccccCceEEEeeccccccCCcccce
Confidence 9998764 56777742 22 379999999999999998754 12 789999998876432111 111111
Q ss_pred ccCCCCcEEEEeecC-CcEEeeecCCCCCCCCCCCCCHHHHHHHHHHHhhhccCCCCCCCcccceeeeeecccCCCCCCC
Q 008503 271 PKTKDGRVVFMLPWL-GRTVAGTTDSDTVITLLPEPHEDEIQFILDAISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNT 349 (563)
Q Consensus 271 ~~~~~g~~~~~~P~~-g~~~iG~t~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~l~~~~v~~~~aG~rp~~~d~~~~~~ 349 (563)
. . .....|++|.. |.+++|+++... ..+..++.+.++.+++.+.++| |.+...++...|+|+||.++|..
T Consensus 226 ~-~-~~~~~y~~p~~~g~~~iG~~~~~~--~~~~~~~~~~~~~l~~~~~~~~-P~l~~~~~~~~~~g~r~~t~D~~---- 296 (337)
T TIGR02352 226 V-V-YGRRVYIVPRRDGRLVVGATMEES--GFDTTPTLGGIKELLRDAYTIL-PALKEARLLETWAGLRPGTPDNL---- 296 (337)
T ss_pred E-E-EcCCEEEEEcCCCeEEEEEecccc--CccCCCCHHHHHHHHHHHHHhC-CCcccCcHHHheecCCCCCCCCC----
Confidence 1 1 12235778864 568899887542 2345677888999999999999 78888889999999999998854
Q ss_pred CCccccceEeec--CCCeEEEecC---hhhhhHHHHHHHHHHHHH
Q 008503 350 ESISRDHVVCED--FPGLVTITGG---KWTTYRSMAEDAVNAAIK 389 (563)
Q Consensus 350 ~~~~~~~~i~~~--~~gl~~~~Gg---~~t~a~~~Ae~v~~~i~~ 389 (563)
|+|+.. .+|++.++|. +++.+|.+|+.++++|..
T Consensus 297 ------piig~~~~~~~~~~~~g~~g~G~~~~p~~g~~la~~i~~ 335 (337)
T TIGR02352 297 ------PYIGEHPEDRRLLIATGHYRNGILLAPATAEVIADLILG 335 (337)
T ss_pred ------CEeCccCCCCCEEEEcccccCceehhhHHHHHHHHHHhc
Confidence 888863 4789998882 699999999999999874
No 24
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=99.88 E-value=5.6e-21 Score=203.47 Aligned_cols=308 Identities=16% Similarity=0.179 Sum_probs=191.5
Q ss_pred CCCccEEEECCchHHHHHHHHHHHCC--CcEEEEeccC-CCCCCc--cCCCCccccchhh---H--------------HH
Q 008503 69 SNPLDILVIGGGATGCGVALDAATRG--LRVGLVERED-FSSGTS--SRSTKLIHGGVRY---L--------------EK 126 (563)
Q Consensus 69 ~~~~DVvIIGaGiaG~~~A~~la~~G--~~V~llEk~~-~~~g~s--~~~~~~~~~g~~~---~--------------~~ 126 (563)
...+||+|||||++|+++|++|++++ ++|+||||.+ ++.++| ++|++.+|.|..+ - .+
T Consensus 43 ~~~~DVvIIGGGI~G~a~A~~La~~~~~~~V~VlEk~~~~a~~aS~~~nnsg~iHag~~~~~y~~~kA~~~~~~~~~~~~ 122 (497)
T PTZ00383 43 SDVYDVVIVGGGVTGTALFYTLSKFTNLKKIALIERRSDFALVASHGKNNSQTIHCGDIETNYTLEKARKVKRQADMLRN 122 (497)
T ss_pred CCcccEEEECccHHHHHHHHHHHhhCCCCEEEEEecCcchhhcccCCCCCCccccceeehhcCCHHHHHHHHHHHHHHHH
Confidence 46799999999999999999999973 7999999985 566555 5577788876421 1 11
Q ss_pred HhhccCc-------------------ccHHHH---HHHHHHhhh-c----------cc------------CCcceEE-Ee
Q 008503 127 AVFNLDY-------------------GQLKLV---FHALEERKQ-A----------KD------------RSLKGAV-VY 160 (563)
Q Consensus 127 ~~~~~~~-------------------~~~~~~---~~~l~~~~~-~----------~~------------~~~~~~~-~~ 160 (563)
.+.++.. .+...+ .+.+.+... . .. +...+++ .+
T Consensus 123 ~~~~L~~~~~~~~~~~~G~l~va~~e~e~~~L~~~~~~~~~~~~~~e~ld~~el~e~eP~v~~~~~~~~~~e~~~Al~~p 202 (497)
T PTZ00383 123 YLTKLPPSERDSIIFKMQKMVLGVGEKECEFLEKRYPVFKELFPSMQLLDKKEIHRVEPRVVLKNNHTLREEPLAALYVP 202 (497)
T ss_pred HHHHhcccccccceeeCCEEEEEECHHHHHHHHHHHHHHHccCCCeEEECHHHHHHhCcccccCccccccccceEEEEeC
Confidence 1111100 011111 111111110 0 11 1223343 45
Q ss_pred cC-ceechHHHHHHHHHHHHH----CC--CEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccCcChh
Q 008503 161 YD-GQMNDSRLNVGLALTAAL----AG--AAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 233 (563)
Q Consensus 161 ~~-~~~~~~~l~~~l~~~a~~----~G--~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~~s~ 233 (563)
.+ +.+|+..++..|.+.+.+ .| ++++++++|++|.+++ +.++.|.. .. .+++|+.||+|+|+|+.
T Consensus 203 ~~g~~Vd~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~--~~~~~V~T---~~---G~i~A~~VVvaAG~~S~ 274 (497)
T PTZ00383 203 NELTTVDYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERSN--DSLYKIHT---NR---GEIRARFVVVSACGYSL 274 (497)
T ss_pred CCCEEECHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecC--CCeEEEEE---CC---CEEEeCEEEECcChhHH
Confidence 56 589999999999999998 78 7899999999998874 34555643 22 36999999999999999
Q ss_pred hhhhhhcCCCCCeeecCCceEEEecCCcCCCCcccccccCCCCcEEEEee----c---CCcEEeeecCCCCCCC--C---
Q 008503 234 SVRKLADQNVQPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLP----W---LGRTVAGTTDSDTVIT--L--- 301 (563)
Q Consensus 234 ~l~~~~g~~~~~~v~~~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~P----~---~g~~~iG~t~~~~~~~--~--- 301 (563)
.+.++.|......+.|.+|++++.++. .++.+++.. +...-|..| . ++.+++||+....... .
T Consensus 275 ~La~~~Gi~~~~~i~Pv~G~~~~~~~~----~~~kVY~v~-~p~~Pf~~vH~d~~i~~~g~~~~GP~A~~~~~~e~y~~~ 349 (497)
T PTZ00383 275 LFAQKMGYGLEYSCLPVAGSFYFSGNI----LNGKVYTVQ-NPALPFAAVHGDPDIIAKGKTRFGPTALPLPLLERYNMS 349 (497)
T ss_pred HHHHHhCCCCCCCEEecCceEEEcChh----hcCceecCC-CCCCCCcCccCCCccCCCCeEEEccCcccchHHhCCCCC
Confidence 999998876556799999999887631 122222211 111111111 1 4567889887542100 0
Q ss_pred CC-------CCCH------------HH-H----------------HHHHHHHhhhccCCCCCCCccc--ceeeeeecccC
Q 008503 302 LP-------EPHE------------DE-I----------------QFILDAISDYLNVKVRRTDVLS--AWSGIRPLAMD 343 (563)
Q Consensus 302 ~~-------~~~~------------~~-~----------------~~ll~~~~~~~~~~l~~~~v~~--~~aG~rp~~~d 343 (563)
+. ..+. .. . ...++.+++++ |.++..|+.. .++|+||...+
T Consensus 350 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~k~~~~~~~~~~~-P~~~~~d~~~~~~~~GvR~Q~i~ 428 (497)
T PTZ00383 350 SLPDFLKVWNPDLNLLAVYFDLFKDSTMRKYVLRNFLFEVPLLNKYLFLKDARKIV-PSLTRKDLRYCVGYGGVRPQLID 428 (497)
T ss_pred chHHHHHhcCCChhHHHhHHHHhhChhHHHHHHHHHHHHHHhcCHHHHHHHHHHhC-CCCCHHHeeeccCCCceEEEEEE
Confidence 00 0111 00 1 12345566787 7888888865 46699999876
Q ss_pred CCCCCCCCccccceEeecCCCeEEEec--ChhhhhHHHHHHHHHHHHHcCCC
Q 008503 344 PSAKNTESISRDHVVCEDFPGLVTITG--GKWTTYRSMAEDAVNAAIKSGKL 393 (563)
Q Consensus 344 ~~~~~~~~~~~~~~i~~~~~gl~~~~G--g~~t~a~~~Ae~v~~~i~~~~~~ 393 (563)
.. ..++.-.--+....+|.+...| -+-|++..-|+.=+..|++.++.
T Consensus 429 ~~---~~~L~~g~~~i~~~~~~i~~~~~spgast~l~~~~~d~~~~~~~~~~ 477 (497)
T PTZ00383 429 KV---SKKLLLGEGKIDPGKGIIFNITPSPGATTCLGNAESDMREICERLGA 477 (497)
T ss_pred CC---CCeEecCceEEecCCCcEEeccCCCcHHHHHHHHHHHHHHHHHHhCC
Confidence 43 1111111111223467666666 36899999999999999998763
No 25
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=99.88 E-value=1.2e-20 Score=200.15 Aligned_cols=314 Identities=15% Similarity=0.117 Sum_probs=196.0
Q ss_pred CCCccEEEECCchHHHHHHHHHHHC--CCcEEEEec-cCCCCCCccC--CCCccccch---hh----------HH-----
Q 008503 69 SNPLDILVIGGGATGCGVALDAATR--GLRVGLVER-EDFSSGTSSR--STKLIHGGV---RY----------LE----- 125 (563)
Q Consensus 69 ~~~~DVvIIGaGiaG~~~A~~la~~--G~~V~llEk-~~~~~g~s~~--~~~~~~~g~---~~----------~~----- 125 (563)
...+|||||||||+|+++|+.|++. |++|+|+|| ..++.++|++ |+|..|.|. .| +.
T Consensus 4 ~~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~~~~a~~sS~~~nNagt~hag~~e~nY~~~~~~g~~~~~ka~~i 83 (497)
T PRK13339 4 SESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLDSPAIESSNEWNNAGTGHAALCELNYTVQQPDGSIDIEKAKEI 83 (497)
T ss_pred CccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcCCCcchhcCCCccccCcceeeehhhccCCcccCCcccHHHHHHH
Confidence 4568999999999999999999999 899999999 6788888855 666666543 11 01
Q ss_pred --------HHhhccCc-----------------------ccHHHHH---HHHHHhhhc------------------cc--
Q 008503 126 --------KAVFNLDY-----------------------GQLKLVF---HALEERKQA------------------KD-- 151 (563)
Q Consensus 126 --------~~~~~~~~-----------------------~~~~~~~---~~l~~~~~~------------------~~-- 151 (563)
+.+..+.. .+...+. +.+.+.+.+ ..
T Consensus 84 ~~~~~~s~~f~~~~~~~~~~~~~~~~i~~~~~m~~~~~~~~~~~L~~r~~~~~~~~~f~~~~~~~d~~el~~~~P~l~~~ 163 (497)
T PRK13339 84 NEQFEISKQFWGHLVKSGTIGNPREFINPLPHISFVRGKNNVKFLKKRYEALKQHPMFDNIEYTEDIEVMAKWMPLMMPG 163 (497)
T ss_pred HHHHHHHHHHHHhhhhhcCCCChHhhcccCCeEEEEEChHHHHHHHHHHHHhhccCCCCCcEEecCHHHHHHhCCcccCC
Confidence 11101000 0111111 111111110 11
Q ss_pred ----CCcceEEEecCceechHHHHHHHHHHHHH-CCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEE
Q 008503 152 ----RSLKGAVVYYDGQMNDSRLNVGLALTAAL-AGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVN 226 (563)
Q Consensus 152 ----~~~~~~~~~~~~~~~~~~l~~~l~~~a~~-~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~ 226 (563)
....+.+.+.++.+|+..+...|.+.+.+ .|++++++++|+++.++++ +. |.+.+.+..+++..+++|++||+
T Consensus 164 r~~~~~~~Al~~p~~~~VD~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d-~~-w~v~v~~t~~g~~~~i~Ad~VV~ 241 (497)
T PRK13339 164 REANEIMAASKIDEGTDVNFGALTRKLAKHLESHPNAQVKYNHEVVDLERLSD-GG-WEVTVKDRNTGEKREQVADYVFI 241 (497)
T ss_pred CCCCcceeEEECCCceecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCC-CC-EEEEEEecCCCceEEEEcCEEEE
Confidence 12333446777889999999999999865 5999999999999987632 33 33444322334223689999999
Q ss_pred ccCcChhhhhhhhcCCC--CCeeecCCceEEEecCCcCCCC-cccccccCCCCcEEEEeecC------Cc--EEeeecCC
Q 008503 227 AAGPFCDSVRKLADQNV--QPMICPSSGVHIVLPDYYSPEG-MGLIVPKTKDGRVVFMLPWL------GR--TVAGTTDS 295 (563)
Q Consensus 227 AtG~~s~~l~~~~g~~~--~~~v~~~~G~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~P~~------g~--~~iG~t~~ 295 (563)
|+|.|++.+.++.|... ...+.|.+|+++.++....... ...+++....+.-.|.+|+. |. +.+||+..
T Consensus 242 AAGawS~~La~~~Gi~~~~~~~i~PvkGq~l~l~~~~~v~~h~~~VY~v~~~~~P~~~VPhlDtr~i~G~~~v~~GP~A~ 321 (497)
T PRK13339 242 GAGGGAIPLLQKSGIPESKHLGGFPISGQFLRCTNPEVVKQHQAKVYSKEPVGTPPMTVPHLDTRYIDGKRSLLFGPYAG 321 (497)
T ss_pred CCCcchHHHHHHcCCCccCCCceEeeeEEEEEecCHHHhhhcCceEeCCCCCCCCCCcCCCCCCcEEcCceeEEECCCcc
Confidence 99999999999988752 2458999999999875322111 12344422222223455542 33 56777755
Q ss_pred CCC-CCCCCC-------CCH-----------HH--------------HHHHHHHHhhhccCCCCCCCcccceeeeeeccc
Q 008503 296 DTV-ITLLPE-------PHE-----------DE--------------IQFILDAISDYLNVKVRRTDVLSAWSGIRPLAM 342 (563)
Q Consensus 296 ~~~-~~~~~~-------~~~-----------~~--------------~~~ll~~~~~~~~~~l~~~~v~~~~aG~rp~~~ 342 (563)
... ...... ... .. ....++.+++++ |.++..++....+|+|+...
T Consensus 322 ~~~~~~r~~~~~d~~~~l~~~~~~~~~~~~~~~~~l~~~~~~e~~~~k~~~~~~~~~~~-P~~~~~D~~~~~aGiR~Q~i 400 (497)
T PRK13339 322 FGPKFLKHGSNLDLFKSVKPYNITTMLAVAVKNMPLIKYSIDQVMQTKEGRMNHLRTFY-PEARAEDWRLYTAGKRVQVI 400 (497)
T ss_pred chHHHhccCCHHHHHHHhCccCcHHHHHHHHhccHHHHHHHHHHhhCHHHHHHHHHHhC-CCCCHHHeeEcCCceEEEEE
Confidence 320 000000 000 00 123556677888 78888889889999999887
Q ss_pred CCCCCCCCCccccceEe-----ecCCCeEEEe-c--ChhhhhHHHHHHHHHHHHH
Q 008503 343 DPSAKNTESISRDHVVC-----EDFPGLVTIT-G--GKWTTYRSMAEDAVNAAIK 389 (563)
Q Consensus 343 d~~~~~~~~~~~~~~i~-----~~~~gl~~~~-G--g~~t~a~~~Ae~v~~~i~~ 389 (563)
+.+ .+...++++. ...++.+++. + -+.|++..+|+++++.+..
T Consensus 401 ~~~----~~~~~dfl~~g~~~i~~~~~s~~~lna~SPgATssl~ia~~v~~~~f~ 451 (497)
T PRK13339 401 KDT----PEHGKGFIQFGTEVVNSQDHSVIALLGESPGASTSVSVALEVLERNFP 451 (497)
T ss_pred eCC----CCccCCEEEecceeeecCCCeEEEecCCCcHHHhhHHHHHHHHHHHhH
Confidence 533 2233356543 1345655544 4 3799999999999997653
No 26
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=99.87 E-value=7.7e-21 Score=198.98 Aligned_cols=273 Identities=19% Similarity=0.154 Sum_probs=186.6
Q ss_pred HHHHHHHCCCcEEEEecc-CCCCCCccCCCCccccchh--------hHH-------HHhhcc-------Ccc--------
Q 008503 86 VALDAATRGLRVGLVERE-DFSSGTSSRSTKLIHGGVR--------YLE-------KAVFNL-------DYG-------- 134 (563)
Q Consensus 86 ~A~~la~~G~~V~llEk~-~~~~g~s~~~~~~~~~g~~--------~~~-------~~~~~~-------~~~-------- 134 (563)
+|++|+++|++|+|||++ .++.|+|++++|+++.... +.. +.+.++ .+.
T Consensus 1 ~A~~La~~G~~V~vlE~~~~~~~gaSg~~~G~l~~~~~~~~~~~~~l~~~~~~~a~~l~~~l~~~~~~~~~~~~G~L~~a 80 (381)
T TIGR03197 1 TAYSLARRGWQVTLYEQDEAPAQGASGNPQGALYPLLSADDNPLSRFFLAAFLYARRFYRQLAEAGFPFDHEWCGVLQLA 80 (381)
T ss_pred ChHHHHhCCCeeEEEeCCCcccccCCCChhheeeeecCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCceEEec
Confidence 589999999999999996 5889999999999975321 110 001111 010
Q ss_pred ----cHHHHHHHHHHhhh------c----------ccCCcceE-EEecCceechHHHHHHHHHHHHHCCCEEEcCcEEEE
Q 008503 135 ----QLKLVFHALEERKQ------A----------KDRSLKGA-VVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVIS 193 (563)
Q Consensus 135 ----~~~~~~~~l~~~~~------~----------~~~~~~~~-~~~~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~ 193 (563)
+.....+...+.+. + ......++ +.+.++.+||..++..|.+.+.+ |++++++++|++
T Consensus 81 ~~~~~~~~l~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~gal~~~~~g~idp~~~~~~l~~~~~~-G~~i~~~~~V~~ 159 (381)
T TIGR03197 81 YDEKEAERLQKLLEQLGFPEELARWVDAEQASQLAGIPLPYGGLFFPQGGWLSPPQLCRALLAHAGI-RLTLHFNTEITS 159 (381)
T ss_pred CChHHHHHHHHHHHhcCCCHHHheeCCHHHHHHhcCCCCCCCceEeCCCcccChHHHHHHHHhccCC-CcEEEeCCEEEE
Confidence 01111111111110 0 01112233 46678999999999999999998 999999999999
Q ss_pred EEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccCcChhhhhhhhcCCCCCeeecCCceEEEecCCcCCCCcccccccC
Q 008503 194 LIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQPMICPSSGVHIVLPDYYSPEGMGLIVPKT 273 (563)
Q Consensus 194 l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~~s~~l~~~~g~~~~~~v~~~~G~~~~~~~~~~~~~~~~~~~~~ 273 (563)
+..++ ++ +.|.. .+| ..++|+.||+|+|.|+..+..+. . ..+.|.+|+++.++..........++.
T Consensus 160 i~~~~--~~-~~v~t---~~g--~~~~a~~vV~a~G~~~~~l~~~~--~--~pi~p~rg~~~~~~~~~~~~~~~~~~~-- 225 (381)
T TIGR03197 160 LERDG--EG-WQLLD---ANG--EVIAASVVVLANGAQAGQLAQTA--H--LPLRPVRGQVSHLPATEALSALKTVLC-- 225 (381)
T ss_pred EEEcC--Ce-EEEEe---CCC--CEEEcCEEEEcCCcccccccccc--c--CCccccccceeeccCCCcccccCceEe--
Confidence 98764 33 34432 233 25899999999999999887653 2 238899999988764321111112221
Q ss_pred CCCcEEEEeec-CCcEEeeecCCCCCCCCCCCCCHHHHHHHHHHHhhhccCCCC-----CCCcccceeeeeecccCCCCC
Q 008503 274 KDGRVVFMLPW-LGRTVAGTTDSDTVITLLPEPHEDEIQFILDAISDYLNVKVR-----RTDVLSAWSGIRPLAMDPSAK 347 (563)
Q Consensus 274 ~~g~~~~~~P~-~g~~~iG~t~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~l~-----~~~v~~~~aG~rp~~~d~~~~ 347 (563)
.+ .|++|. +|.+++|.+.+.. ..+...+.+.++.+++.+.+++ |.+. +.++.+.|+|+||.++|+.
T Consensus 226 ~~---~y~~p~~~g~~~iG~t~~~~--~~~~~~~~~~~~~~~~~~~~~~-P~l~~~~~~~~~~~~~~~G~r~~t~D~~-- 297 (381)
T TIGR03197 226 YD---GYLTPANNGEHCIGASYDRN--DDDLALREADHAENLERLAECL-PALAWASEVDISALQGRVGVRCASPDHL-- 297 (381)
T ss_pred CC---ceecccCCCceEeecccCCC--CCCCCcCHHHHHHHHHHHHHhC-cccchhhccCccccCceEEEeccCCCcC--
Confidence 11 367786 4667889876542 2344567788899999999999 6665 5788999999999999865
Q ss_pred CCCCccccceEeec---------------------------CCCeEEEecC---hhhhhHHHHHHHHHHHHH
Q 008503 348 NTESISRDHVVCED---------------------------FPGLVTITGG---KWTTYRSMAEDAVNAAIK 389 (563)
Q Consensus 348 ~~~~~~~~~~i~~~---------------------------~~gl~~~~Gg---~~t~a~~~Ae~v~~~i~~ 389 (563)
|+|+.. .+|++.++|. +++.++.+|+.++++|..
T Consensus 298 --------Piig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~a~G~~g~G~~~ap~~g~~la~~i~~ 361 (381)
T TIGR03197 298 --------PLVGAVPDFEAIKEAYAELAKDKNRPIAEPAPYYPGLYVLGGLGSRGLTSAPLAAEILAAQICG 361 (381)
T ss_pred --------ccCCCCCCHHHHHHHHHHhcccccccccccCCCCCCeEEEecccchHHHHHHHHHHHHHHHHhC
Confidence 666542 4799999984 699999999999999864
No 27
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=99.85 E-value=2.3e-19 Score=172.57 Aligned_cols=301 Identities=22% Similarity=0.252 Sum_probs=183.3
Q ss_pred CCccEEEECCchHHHHHHHHHHHC----CCcEEEEeccC-CCCCCccCCCCccccch-------------hhHHHHhhcc
Q 008503 70 NPLDILVIGGGATGCGVALDAATR----GLRVGLVERED-FSSGTSSRSTKLIHGGV-------------RYLEKAVFNL 131 (563)
Q Consensus 70 ~~~DVvIIGaGiaG~~~A~~la~~----G~~V~llEk~~-~~~g~s~~~~~~~~~g~-------------~~~~~~~~~~ 131 (563)
..+||+|||||..|+++|+.|.++ |++|+|+|+++ +...++.-+.|-+.--+ .++...-+.+
T Consensus 85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtytqssT~lSvGGi~QQFSlpEnIqmSLF~a~Flr~a~ehl 164 (509)
T KOG2853|consen 85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYTQSSTMLSVGGICQQFSLPENIQMSLFTAEFLRNAREHL 164 (509)
T ss_pred cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcccccceeeeecceeeecccchhhhhhhHHHHHHHHHHHhh
Confidence 468999999999999999999765 79999999997 44433333333222111 1121111111
Q ss_pred ---CcccH--------------HHHHHHHHHhhhc-----------------------ccCCcc-eEE-EecCceechHH
Q 008503 132 ---DYGQL--------------KLVFHALEERKQA-----------------------KDRSLK-GAV-VYYDGQMNDSR 169 (563)
Q Consensus 132 ---~~~~~--------------~~~~~~l~~~~~~-----------------------~~~~~~-~~~-~~~~~~~~~~~ 169 (563)
+..+. +.-.+.+.....+ +.+++. +.+ ...+|++||+.
T Consensus 165 ~~~d~~~vdl~f~P~GyL~LA~ee~ae~m~s~~kvQ~e~GAk~eLls~d~Lt~rfPwlntegVaLa~lG~e~EGwfdpw~ 244 (509)
T KOG2853|consen 165 GILDSEQVDLNFFPTGYLRLASEEEAEMMRSNSKVQNELGAKVELLSPDELTKRFPWLNTEGVALASLGVEKEGWFDPWA 244 (509)
T ss_pred ccccCCCCCcccCCCceEEEcchhhHHHHHHhHHHHHhhcchhcccCHHHHhhhCCcccccceeeeecccccccccCHHH
Confidence 00000 0001111111110 122221 111 34689999999
Q ss_pred HHHHHHHHHHHCCCEEEcCcEEEEEEEc---------CCCC-------cEEEEEEEECCCCcEEEEEeCeEEEccCcChh
Q 008503 170 LNVGLALTAALAGAAVLNHAEVISLIKD---------EASN-------RIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 233 (563)
Q Consensus 170 l~~~l~~~a~~~G~~i~~~~~v~~l~~~---------~~~g-------~v~gv~~~d~~~g~~~~i~A~~VI~AtG~~s~ 233 (563)
+...+.+.+...|+.+..+ +|++++.+ ++ + ++.+|.++- .+.....+++..+|||+|+||.
T Consensus 245 LLs~~rrk~~~lGv~f~~G-eV~~Fef~sqr~v~~~tDd-~t~~~~~~~i~~vvV~m-~d~~~r~vk~al~V~aAGa~s~ 321 (509)
T KOG2853|consen 245 LLSGIRRKAITLGVQFVKG-EVVGFEFESQRAVHAFTDD-GTAKLRAQRISGVVVRM-NDALARPVKFALCVNAAGAWSG 321 (509)
T ss_pred HHHHHHHHhhhhcceEecc-eEEEEEEecccceeeeccc-chhhhhhcccceeEEec-CchhcCceeEEEEEeccCccHH
Confidence 9999999999999999876 77777654 22 3 566666653 3333467999999999999999
Q ss_pred hhhhhhcCCC-------CCeeecCCceEEEecCCcCC-CCcccccccCCCCcEEEEeec--CCcEEeeecCCC--CCCCC
Q 008503 234 SVRKLADQNV-------QPMICPSSGVHIVLPDYYSP-EGMGLIVPKTKDGRVVFMLPW--LGRTVAGTTDSD--TVITL 301 (563)
Q Consensus 234 ~l~~~~g~~~-------~~~v~~~~G~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~P~--~g~~~iG~t~~~--~~~~~ 301 (563)
+++++.|... |..+.|.|...+++..+..| .+.++++ |...+|+... .++.+.|-+... .++..
T Consensus 322 QvArlAgIG~g~g~L~vplPiepRKRyvyvi~~~~~PGl~~Pl~i----DpsG~f~Rrdglg~nfl~grsp~ed~~~d~~ 397 (509)
T KOG2853|consen 322 QVARLAGIGKGPGLLAVPLPIEPRKRYVYVIFAPDVPGLDTPLTI----DPSGVFFRRDGLGGNFLCGRSPSEDEEPDHS 397 (509)
T ss_pred HHHHHhccCCCCceeeecccCCccceeEEEEeCCCCCCCCCceeE----CCCccEEEecCCCCceecccCCccccCCCcc
Confidence 9999987542 33478888888877666555 3344444 2234666654 356677655322 22223
Q ss_pred CCCCCHHHHHHHHHHHhhhc---cCCCCCCCcccceeeeeecccCCCCCCCCCccccceEeecC--CCeEEEec--C-hh
Q 008503 302 LPEPHEDEIQFILDAISDYL---NVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCEDF--PGLVTITG--G-KW 373 (563)
Q Consensus 302 ~~~~~~~~~~~ll~~~~~~~---~~~l~~~~v~~~~aG~rp~~~d~~~~~~~~~~~~~~i~~~~--~gl~~~~G--g-~~ 373 (563)
+..++. +++.+.+...+ -|.+...+|..+|+|.+....-. ...+|+.++ .|++.++| | ++
T Consensus 398 nldVD~---d~F~qkiwP~L~nRVP~fetakVqsaWaGyyD~NtfD---------~ngViG~HP~y~Nly~atGFsghGv 465 (509)
T KOG2853|consen 398 NLDVDH---DYFYQKIWPHLANRVPAFETAKVQSAWAGYYDHNTFD---------DNGVIGEHPLYTNLYMATGFSGHGV 465 (509)
T ss_pred ccccCh---HHHHhhhhHHHHhcccccceeeeeehhcccccccccc---------cCCcccCCcceeeeeeeecccccch
Confidence 333443 34444443332 16788899999999998764211 235676643 68888888 2 56
Q ss_pred hhhHHHHHHHHHHHHH
Q 008503 374 TTYRSMAEDAVNAAIK 389 (563)
Q Consensus 374 t~a~~~Ae~v~~~i~~ 389 (563)
.-++++|+.++++|++
T Consensus 466 qqs~avgRAiaElIld 481 (509)
T KOG2853|consen 466 QQSPAVGRAIAELILD 481 (509)
T ss_pred hcchHHHHHHHHHHhc
Confidence 6666666666666654
No 28
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=99.84 E-value=1.5e-19 Score=187.34 Aligned_cols=297 Identities=22% Similarity=0.270 Sum_probs=201.7
Q ss_pred CCccEEEECCchHHHHHHHHHHHCCCc-EEEEeccCCCCCCccCCCCccccchhhH----H-----------HHhhc--c
Q 008503 70 NPLDILVIGGGATGCGVALDAATRGLR-VGLVEREDFSSGTSSRSTKLIHGGVRYL----E-----------KAVFN--L 131 (563)
Q Consensus 70 ~~~DVvIIGaGiaG~~~A~~la~~G~~-V~llEk~~~~~g~s~~~~~~~~~g~~~~----~-----------~~~~~--~ 131 (563)
...||+|||||..|+.+||+||++|.+ ++++|+.....|+++.+.|++.. +++. + +...+ +
T Consensus 38 ~~A~vvViggG~~g~~~~yhlak~g~k~avlle~~~ltsgttwhtagl~~~-lr~~dv~~qlia~~~~~l~~~leeEtgl 116 (856)
T KOG2844|consen 38 STADVVVIGGGSLGCSTAYHLAKRGMKGAVLLERSRLTSGTTWHTAGLLWQ-LFPSDVELQLIAHTSRVLYRELEEETGL 116 (856)
T ss_pred CcccEEEEcCCchhHHHHHHHHHccccceEEEeeeeeccccccccccceee-ccCCchhHHHHHHHHHHHHHHHHHhcCC
Confidence 347999999999999999999999999 45556666788888888887643 1110 0 00000 0
Q ss_pred C--c----------ccH-HHHHHHHHHhhhc--------------------ccCCcceE-EEecCceechHHHHHHHHHH
Q 008503 132 D--Y----------GQL-KLVFHALEERKQA--------------------KDRSLKGA-VVYYDGQMNDSRLNVGLALT 177 (563)
Q Consensus 132 ~--~----------~~~-~~~~~~l~~~~~~--------------------~~~~~~~~-~~~~~~~~~~~~l~~~l~~~ 177 (563)
. + ... ...+..+..++.. +.+++.++ +.|.||.+||..++.+|+..
T Consensus 117 ~tGwiq~G~~~lAs~~~R~de~kR~~S~g~a~g~e~~lLsPee~~~~~pLLn~d~v~g~Ly~P~DG~~DP~~lC~ala~~ 196 (856)
T KOG2844|consen 117 HTGWIQNGGIFLASNRQRLDEYKRLMSRGKAHGVESELLSPEETQELFPLLNVDDVYGGLYSPGDGVMDPAGLCQALARA 196 (856)
T ss_pred CcceecCCceEEecCHHHHHHHHHHHHhhhhccceeeecCHHHHHHhCcccchhHheeeeecCCCcccCHHHHHHHHHHH
Confidence 0 0 000 0011122222111 33445554 57899999999999999999
Q ss_pred HHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccCcChhhhhhhhcCCCCCeeecCCceEEEe
Q 008503 178 AALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQPMICPSSGVHIVL 257 (563)
Q Consensus 178 a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~~s~~l~~~~g~~~~~~v~~~~G~~~~~ 257 (563)
|.+.|+.|..+++|++|.... +++++|. |.. +.|++..||||+|.|+..+..+.|...| +.|...++++.
T Consensus 197 A~~~GA~viE~cpV~~i~~~~--~~~~gVe-----T~~-G~iet~~~VNaaGvWAr~Vg~m~gvkvP--L~p~~H~YvvT 266 (856)
T KOG2844|consen 197 ASALGALVIENCPVTGLHVET--DKFGGVE-----TPH-GSIETECVVNAAGVWAREVGAMAGVKVP--LVPMHHAYVVT 266 (856)
T ss_pred HHhcCcEEEecCCcceEEeec--CCcccee-----ccC-cceecceEEechhHHHHHhhhhcCCccc--ceeeeeeEEEe
Confidence 999999999999999998765 4566774 332 5799999999999999999999997765 78888888776
Q ss_pred cCCcCCCCcc-cccccCCCCcEEEEeecCCcEEeeecCCCC----CCCC-----CCCCCHHHHHHHHHHHhhhccCCCCC
Q 008503 258 PDYYSPEGMG-LIVPKTKDGRVVFMLPWLGRTVAGTTDSDT----VITL-----LPEPHEDEIQFILDAISDYLNVKVRR 327 (563)
Q Consensus 258 ~~~~~~~~~~-~~~~~~~~g~~~~~~P~~g~~~iG~t~~~~----~~~~-----~~~~~~~~~~~ll~~~~~~~~~~l~~ 327 (563)
.+-....... -++. ..|++ +|+.-+.+.++.|+..... ..+. ...++-+.+...++.+.+.. |.+..
T Consensus 267 ~~IeGi~s~t~p~ir-D~DgS-vylR~~~~gil~GGyE~n~i~~egv~~~~~~~lqE~DWd~F~~hlesai~r~-P~l~k 343 (856)
T KOG2844|consen 267 SRIEGVSSLTRPNIR-DLDGS-VYLRQQGDGILFGGYESNPIFTEGVPPGFATGLQEPDWDHFEPHLEAAIERV-PVLEK 343 (856)
T ss_pred cccCCccCCCcccee-cccce-EEEEecCCceeccccccCceeccccCCccccccccccHhhhHHHHHHHHHhC-chhhh
Confidence 5422111111 1111 34555 5666666667777654321 0000 11234455566677776666 67888
Q ss_pred CCcccceeeeeecccCCCCCCCCCccccceEeecC--CCeEEEecC---hhhhhHHHHHHHHHHHHHc
Q 008503 328 TDVLSAWSGIRPLAMDPSAKNTESISRDHVVCEDF--PGLVTITGG---KWTTYRSMAEDAVNAAIKS 390 (563)
Q Consensus 328 ~~v~~~~aG~rp~~~d~~~~~~~~~~~~~~i~~~~--~gl~~~~Gg---~~t~a~~~Ae~v~~~i~~~ 390 (563)
..|...-.|.-.++||.. |++++++ .|++..+|- ++..+-.+++.++++|++-
T Consensus 344 ~~i~~~v~gpe~ftPD~~----------p~mGe~p~~~gy~v~~G~ns~G~~~~GG~Gk~la~wi~~g 401 (856)
T KOG2844|consen 344 AGIKSLVNGPETFTPDHL----------PIMGESPEVRGYWVACGFNSAGLSFGGGCGKYLAEWIIHG 401 (856)
T ss_pred cCccceecCccccCCccc----------cccCCCccccceEEeecCCccceeccCchhHHHHHHhhcC
Confidence 889999999888888843 7887753 789999983 5778888999999998764
No 29
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=99.80 E-value=2.4e-17 Score=159.18 Aligned_cols=305 Identities=15% Similarity=0.167 Sum_probs=180.4
Q ss_pred CCCccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCC--CCCccCCCCccccch---hhHH---HH---hhccC-----
Q 008503 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFS--SGTSSRSTKLIHGGV---RYLE---KA---VFNLD----- 132 (563)
Q Consensus 69 ~~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~--~g~s~~~~~~~~~g~---~~~~---~~---~~~~~----- 132 (563)
....||+|||||+-|+++|++|+++|.++++||+.+++ .|+|-.-+.++...+ .|.. +. +.+++
T Consensus 5 ~~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ph~~GSShg~sRIiR~~Y~e~~Y~~m~~ea~e~W~~~~~~~g~ 84 (399)
T KOG2820|consen 5 VKSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLPHSRGSSHGISRIIRPAYAEDKYMSMVLEAYEKWRNLPEESGV 84 (399)
T ss_pred ccceeEEEEcccccchHHHHHHHhcCCeEEEEeccCCCcccCcccCcceeechhhhhHHHHHHHHHHHHHHHhChhhhce
Confidence 35689999999999999999999999999999999753 344433344553322 1211 00 11100
Q ss_pred ------------c---ccHHHHHHH---------------HHHhhh---cccCCcceEEEecCceechHHHHHHHHHHHH
Q 008503 133 ------------Y---GQLKLVFHA---------------LEERKQ---AKDRSLKGAVVYYDGQMNDSRLNVGLALTAA 179 (563)
Q Consensus 133 ------------~---~~~~~~~~~---------------l~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~l~~~a~ 179 (563)
. .++..+... +.++-. ..+++..+...+..|++++...+.++...++
T Consensus 85 ~~~~~t~~~~~~~~e~~~~~sv~~~~k~~~l~h~~l~seEvrk~fP~~~~l~d~~~G~~n~~gGvi~a~kslk~~~~~~~ 164 (399)
T KOG2820|consen 85 KLHCGTGLLISGDPERQRLDSVAANLKRKGLAHSVLISEEVRKRFPSNIPLPDGWQGVVNESGGVINAAKSLKALQDKAR 164 (399)
T ss_pred eecccceeeecCcHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHhCCCCccCCcchhhcccccccEeeHHHHHHHHHHHHH
Confidence 0 111111111 111100 0334445555778899999999999999999
Q ss_pred HCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccCcChhhhhhh-hcCCCCCeeecCCceE---E
Q 008503 180 LAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKL-ADQNVQPMICPSSGVH---I 255 (563)
Q Consensus 180 ~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~~s~~l~~~-~g~~~~~~v~~~~G~~---~ 255 (563)
+.|+.|+.+..|+.+...+..+...+|+. .+| -.+.||.+|+++|+|...+++. ++...| |.|.+-.. .
T Consensus 165 ~~G~i~~dg~~v~~~~~~~e~~~~v~V~T---t~g--s~Y~akkiI~t~GaWi~klL~~~~~~~~P--v~~i~ltvcywk 237 (399)
T KOG2820|consen 165 ELGVIFRDGEKVKFIKFVDEEGNHVSVQT---TDG--SIYHAKKIIFTVGAWINKLLPTSLAIGFP--VAPIQLTVCYWK 237 (399)
T ss_pred HcCeEEecCcceeeEeeccCCCceeEEEe---ccC--CeeecceEEEEecHHHHhhcCcccccCCc--cceeEeehhhhe
Confidence 99999999999998876543244445543 233 3699999999999999888763 344332 33322111 1
Q ss_pred EecC-C--cCCCCcccccccCCCCc-EEEEeecC---CcEEe---eecCCCCCCCCC-C-CCCHHHHHHHHHHHhhhccC
Q 008503 256 VLPD-Y--YSPEGMGLIVPKTKDGR-VVFMLPWL---GRTVA---GTTDSDTVITLL-P-EPHEDEIQFILDAISDYLNV 323 (563)
Q Consensus 256 ~~~~-~--~~~~~~~~~~~~~~~g~-~~~~~P~~---g~~~i---G~t~~~~~~~~~-~-~~~~~~~~~ll~~~~~~~~~ 323 (563)
.... + .......+++++..+.. +.|..|.. +..-+ +..+....+++. + .+....++......+.+. |
T Consensus 238 ~~~~~~~~l~~d~~f~~F~~~~~~~~~~ya~p~~eYpg~~k~~yh~g~~v~~~~~~~p~~~s~~~~idl~~~f~~~~~-p 316 (399)
T KOG2820|consen 238 TKKNMPVYLFDDDCFYAFPPYPDTKLIKYALPGYEYPGLMKVDYHEGSKVVPIDPDGPPKRSLPKAIDLMRRFLRTFG-P 316 (399)
T ss_pred eecCCceeecCCCCceeccCCCCcceEEeccCCCCCcceEEEeecCCCcCCCCCCCCCcccCcchHHHHHHHHHHHhC-c
Confidence 1100 0 11112223344344442 34444532 21111 111111111111 1 122234444444455555 7
Q ss_pred CCCCCCcccceeeeeecccCCCCCCCCCccccceEeec--CCCeEEEecC---hhhhhHHHHHHHHHHHHHcC
Q 008503 324 KVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCED--FPGLVTITGG---KWTTYRSMAEDAVNAAIKSG 391 (563)
Q Consensus 324 ~l~~~~v~~~~aG~rp~~~d~~~~~~~~~~~~~~i~~~--~~gl~~~~Gg---~~t~a~~~Ae~v~~~i~~~~ 391 (563)
.++....+.+-.+++..++|. +|+|+.. ..+++...|+ +|-.+|.+++.+++++.+.+
T Consensus 317 ~l~~~~p~~t~~C~YT~TpD~----------~FviD~~P~~~Nv~Vg~G~SGHGFK~aP~iGk~lae~~~~~~ 379 (399)
T KOG2820|consen 317 DLDDRSPINTKMCMYTDTPDA----------NFVIDKHPQYDNVFVGGGGSGHGFKFAPNIGKYLAEMAMGDL 379 (399)
T ss_pred cccCCCcceeeEEEeeCCCCc----------CeeeecCCCcccEEEecCCCCcceeecchHHHHHHHHhhhcc
Confidence 888777788889999998884 4888764 3577777764 68899999999999988763
No 30
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.79 E-value=8.5e-19 Score=202.61 Aligned_cols=59 Identities=17% Similarity=0.108 Sum_probs=55.1
Q ss_pred CCCccHHHHHHHHHhcCCCChhHHHHhhcccccCChHHHhhhHHHHHHHHHHHcCCCHHHHH
Q 008503 475 GYPFLEAEVAYCARNEYCESAVDFVARRCRLAFLDTDAAGRALPRIIEIMATEHKWDKSRRK 536 (563)
Q Consensus 475 c~~v~~~ei~~ai~~e~~~~~~D~l~rRtr~g~g~~~~g~~~~~~v~~~la~~l~~~~~~~~ 536 (563)
||+||.++|+.|+++ +.+..+.|||.||+||| +|||+.|...++++|+++.|.+++++-
T Consensus 510 ~edvt~~~i~~a~~~--g~~~~~~~K~~tr~GmG-~cQGr~c~~~~~~~~a~~~~~~~~~~g 568 (985)
T TIGR01372 510 QNDVTAKDVELAVRE--GFESVEHLKRYTTLGMA-TDQGKTSNVNGLAIMAEALGKSIPEVG 568 (985)
T ss_pred cccCcHHHHHHHHHh--cCCCHHHHHHhhcCCCc-ccCchhhHHHHHHHHHHHHCcChHhcC
Confidence 999999999999986 78889999999999999 799999999999999999999887763
No 31
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=99.75 E-value=2.6e-17 Score=155.30 Aligned_cols=296 Identities=16% Similarity=0.154 Sum_probs=184.1
Q ss_pred CccEEEECCchHHHHHHHHHHHCC------CcEEEEeccCCCCCCccCCCCccc---cc--hhhH--------HHHhhcc
Q 008503 71 PLDILVIGGGATGCGVALDAATRG------LRVGLVEREDFSSGTSSRSTKLIH---GG--VRYL--------EKAVFNL 131 (563)
Q Consensus 71 ~~DVvIIGaGiaG~~~A~~la~~G------~~V~llEk~~~~~g~s~~~~~~~~---~g--~~~~--------~~~~~~~ 131 (563)
...|+||||||+|+++||.|++.+ +.|+++|...+++|+|+..+|++. .+ +..+ +....++
T Consensus 10 sk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~gaSGkasgfLa~wc~~s~~~~La~lsfkLh~~Lsdey 89 (380)
T KOG2852|consen 10 SKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGASGKASGFLAKWCQPSIIQPLATLSFKLHEELSDEY 89 (380)
T ss_pred ceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccccccccchhhHhhhCCcccchhhHHHHHHHHHHHHhh
Confidence 368999999999999999999998 899999999999999999988873 11 0101 1100000
Q ss_pred ------CcccHH-----------------HHHHHHHHhhhcccCCcc-eEEEecCceechHHHHHHHHHHHHHCC-CEEE
Q 008503 132 ------DYGQLK-----------------LVFHALEERKQAKDRSLK-GAVVYYDGQMNDSRLNVGLALTAALAG-AAVL 186 (563)
Q Consensus 132 ------~~~~~~-----------------~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~a~~~G-~~i~ 186 (563)
.++.+. .-.++++.... .... -+-....++++|+.++..++..|.+.| |+++
T Consensus 90 dGvnnwgYRaltTws~ka~~en~~p~k~pegldWi~~e~v---~~~ssiG~t~ttaqvhP~lFc~~i~sea~k~~~V~lv 166 (380)
T KOG2852|consen 90 DGVNNWGYRALTTWSCKADWENTNPAKVPEGLDWIQRERV---QKCSSIGSTNTTAQVHPYLFCHFILSEAEKRGGVKLV 166 (380)
T ss_pred cCcccccceeeeEEEEEeecccCCcccCCcchhhhhhHHh---hhheeccCCCccceeCHHHHHHHHHHHHHhhcCeEEE
Confidence 000000 00000000000 0000 011234688999999999999998876 9999
Q ss_pred cCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccCcChhhhhhhhcCCCCCeeecCCceEEEecCCcCCCC-
Q 008503 187 NHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQPMICPSSGVHIVLPDYYSPEG- 265 (563)
Q Consensus 187 ~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~~s~~l~~~~g~~~~~~v~~~~G~~~~~~~~~~~~~- 265 (563)
++ .|..+. ++. +++.++..+. ..+......++.||+++|+|+..+....+ +...+-..+.++....+..
T Consensus 167 ~G-kv~ev~-dEk-~r~n~v~~ae-~~~ti~~~d~~~ivvsaGPWTskllp~~r------IsglrihsI~l~~~e~~v~~ 236 (380)
T KOG2852|consen 167 FG-KVKEVS-DEK-HRINSVPKAE-AEDTIIKADVHKIVVSAGPWTSKLLPFTR------ISGLRIHSITLSPGEKPVGP 236 (380)
T ss_pred Ee-eeEEee-ccc-ccccccchhh-hcCceEEeeeeEEEEecCCCchhhccccc------cceeeeeeEEecCCCCCCCC
Confidence 87 677776 333 6777765432 11223467789999999999998876533 3333333344433222111
Q ss_pred ccccc-ccCCCC-----cEEEEeecCCcEEeeecCCC---CCCCCCCCCCHHHHHHHHHHHhhhccCCCCCCCcccceee
Q 008503 266 MGLIV-PKTKDG-----RVVFMLPWLGRTVAGTTDSD---TVITLLPEPHEDEIQFILDAISDYLNVKVRRTDVLSAWSG 336 (563)
Q Consensus 266 ~~~~~-~~~~~g-----~~~~~~P~~g~~~iG~t~~~---~~~~~~~~~~~~~~~~ll~~~~~~~~~~l~~~~v~~~~aG 336 (563)
..++. -.+.|| +-+|..+.....+.|.++.. .++.++....++.+..|.+.+..+. ..+....+...-++
T Consensus 237 ~avf~~l~~~~g~ei~~pe~y~rkd~Evyicg~~~~e~~lPedsd~v~~npeki~~Lk~~a~~v~-s~l~ks~v~~~qac 315 (380)
T KOG2852|consen 237 SAVFCELNTMDGLEICKPEEYARKDREVYICGETDKEHLLPEDSDDVFVNPEKIIELKEMADLVS-SELTKSNVLDAQAC 315 (380)
T ss_pred ceEEEEEEeCCCccccCcceeecCCceEEEecCCCccccCCcccccceeCHHHHHHHHHHHHHhh-hhhccchhhhhhhc
Confidence 12221 112333 11333333345677877765 2455667788888888888887776 56777888888899
Q ss_pred eeecccCCCCCCCCCccccceEeecCCCeEEEecC---hhhhhHHHHHHHHHHHHH
Q 008503 337 IRPLAMDPSAKNTESISRDHVVCEDFPGLVTITGG---KWTTYRSMAEDAVNAAIK 389 (563)
Q Consensus 337 ~rp~~~d~~~~~~~~~~~~~~i~~~~~gl~~~~Gg---~~t~a~~~Ae~v~~~i~~ 389 (563)
+-|.+.+. .-|+|+.-..|++..+|. ++|-+|+.+..+++++++
T Consensus 316 fLP~sn~t---------g~PvIget~sg~yVaagHscWGItnaPaTG~~mAEllld 362 (380)
T KOG2852|consen 316 FLPTSNIT---------GIPVIGETKSGVYVAAGHSCWGITNAPATGKCMAELLLD 362 (380)
T ss_pred cccccCCC---------CCceEeecCCceEEeecccccceecCcchhHHHHHHHhc
Confidence 99987552 238999877799999995 456666666666665553
No 32
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=99.73 E-value=1.2e-16 Score=151.97 Aligned_cols=279 Identities=17% Similarity=0.162 Sum_probs=185.3
Q ss_pred CccEEEECCchHHHHHHHHHHHCC-------CcEEEEeccCCCCCCccCCCCccccch----------hhHHHHhh---c
Q 008503 71 PLDILVIGGGATGCGVALDAATRG-------LRVGLVEREDFSSGTSSRSTKLIHGGV----------RYLEKAVF---N 130 (563)
Q Consensus 71 ~~DVvIIGaGiaG~~~A~~la~~G-------~~V~llEk~~~~~g~s~~~~~~~~~g~----------~~~~~~~~---~ 130 (563)
..+|+|||+|++|+++|+.+.+.+ .+|.+++-..+..-+|...+|++.+.. +|....+. .
T Consensus 3 ~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf~e~T~s~~~AGl~~p~~~~~~~~~~~~~w~k~tf~~l~~ 82 (342)
T KOG3923|consen 3 TPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRFTEDTTSDVAAGLFRPDLSDGTPQEINRQWGKDTFNYLAH 82 (342)
T ss_pred CccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCCccccccccccceeecccCCCCcHHHHHHHHHHHHHHHHH
Confidence 468999999999999999888854 678898777666666666777775442 11111100 0
Q ss_pred c-------------------Cc-ccH----HHHH------HHHHHhhhcc-cCCcceEEEecCceechHHHHHHHHHHHH
Q 008503 131 L-------------------DY-GQL----KLVF------HALEERKQAK-DRSLKGAVVYYDGQMNDSRLNVGLALTAA 179 (563)
Q Consensus 131 ~-------------------~~-~~~----~~~~------~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~l~~~a~ 179 (563)
+ .. ..+ +.+. ..+.++.... +.....++.+.....++..++..|.+.+.
T Consensus 83 l~rs~~a~~aGV~l~sg~~ls~~e~~~~~~~~w~diV~~fr~l~e~EL~~f~~~~~~G~~~Tt~~sE~~~ylpyl~k~l~ 162 (342)
T KOG3923|consen 83 LARSEEAGEAGVCLVSGHILSDSESLDDQQRSWGDIVYGFRDLTERELLGFPDYSTYGIHFTTYLSEGPKYLPYLKKRLT 162 (342)
T ss_pred HhccccccccceEEeeeeeeccCCCchhhhhhHHhhhhhhhcCCHHHhcCCCCccccceeEEEeeccchhhhHHHHHHHH
Confidence 0 00 000 0000 0111111111 11123355566667788899999999999
Q ss_pred HCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccCcChhhhhhhhcCCCCCeeecCCceEEEecC
Q 008503 180 LAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQPMICPSSGVHIVLPD 259 (563)
Q Consensus 180 ~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~~s~~l~~~~g~~~~~~v~~~~G~~~~~~~ 259 (563)
++|+++.. -+|.++..- ..-.+|+||||||.|+..+. |.+ .++|.+|+.+.++.
T Consensus 163 e~Gvef~~-r~v~~l~E~-------------------~~~~~DVivNCtGL~a~~L~---gDd---~~yPiRGqVl~V~A 216 (342)
T KOG3923|consen 163 ENGVEFVQ-RRVESLEEV-------------------ARPEYDVIVNCTGLGAGKLA---GDD---DLYPIRGQVLKVDA 216 (342)
T ss_pred hcCcEEEE-eeeccHHHh-------------------ccCCCcEEEECCcccccccc---CCc---ceeeccceEEEeeC
Confidence 99999975 355554311 01347999999999998764 333 29999999999987
Q ss_pred CcCCCCcccccccCCCCcEEEEeecCCcEEeeecCCCCCCCCCCCCCHHHHHHHHHHHhhhccCCCCCCCcccceeeeee
Q 008503 260 YYSPEGMGLIVPKTKDGRVVFMLPWLGRTVAGTTDSDTVITLLPEPHEDEIQFILDAISDYLNVKVRRTDVLSAWSGIRP 339 (563)
Q Consensus 260 ~~~~~~~~~~~~~~~~g~~~~~~P~~g~~~iG~t~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~l~~~~v~~~~aG~rp 339 (563)
+.. +.+++. .+.+ .|++|-.+.+++|++... ..++..++.++...+++...++. |.+....++..|+|+||
T Consensus 217 pWv---khf~~~--D~~~-ty~iP~~~~V~lGg~~Q~--g~w~~ei~~~D~~dIl~rc~aL~-P~l~~a~ii~E~vGlRP 287 (342)
T KOG3923|consen 217 PWV---KHFIYR--DFSR-TYIIPGTESVTLGGTKQE--GNWNLEITDEDRRDILERCCALE-PSLRHAEIIREWVGLRP 287 (342)
T ss_pred Cce---eEEEEe--cCCc-cEEecCCceEEEcccccc--CcccCcCChhhHHHHHHHHHHhC-cccccceehhhhhcccC
Confidence 543 233342 2222 488999999999998754 56678899999999999999998 89999999999999999
Q ss_pred cccCCCCCCCCCccccceEeec-CCC--eEEEec--C-hhhhhHHHHHHHHHHHHHcCC
Q 008503 340 LAMDPSAKNTESISRDHVVCED-FPG--LVTITG--G-KWTTYRSMAEDAVNAAIKSGK 392 (563)
Q Consensus 340 ~~~d~~~~~~~~~~~~~~i~~~-~~g--l~~~~G--g-~~t~a~~~Ae~v~~~i~~~~~ 392 (563)
..+. . ++ +..+... ... +++..| | ++|.+..+|-+++.++...++
T Consensus 288 ~Rk~-v-----Rl--E~e~~~~~~k~~~VVHnYGHgG~G~Tl~wGtAlea~~Lv~~~l~ 338 (342)
T KOG3923|consen 288 GRKQ-V-----RL--EAELRTRGGKRLTVVHNYGHGGNGFTLGWGTALEAAKLVLDALG 338 (342)
T ss_pred CCCc-e-----ee--eeeeecCCCccceeEeeccCCCCceecccchHHHHHHHHHHHhh
Confidence 7643 1 11 1111111 122 367776 2 699999999999988877643
No 33
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=99.69 E-value=2e-15 Score=163.28 Aligned_cols=163 Identities=17% Similarity=0.257 Sum_probs=105.2
Q ss_pred CCCccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccc-cchhhH-------------HHHhhcc-Cc
Q 008503 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIH-GGVRYL-------------EKAVFNL-DY 133 (563)
Q Consensus 69 ~~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~-~g~~~~-------------~~~~~~~-~~ 133 (563)
..++||||||+|++|+++|+.+++.|++|+||||.+..+|+|..+++.+. .+..+. +.....- ..
T Consensus 59 ~~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~s~~s~Gg~~~~~~~~~~~~g~~d~~~~~~~~~~~~~~~~ 138 (506)
T PRK06481 59 KDKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNTMKASSGMNASETKFQKAQGIADSNDKFYEETLKGGGGT 138 (506)
T ss_pred cccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccccCCccccCChHHHHhcCCCCCHHHHHHHHHHhcCCC
Confidence 35799999999999999999999999999999999877776655544332 222221 1110000 00
Q ss_pred ccHH----------HHHHHHHHhhhccc-----CC--cceEEEecCceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEE
Q 008503 134 GQLK----------LVFHALEERKQAKD-----RS--LKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIK 196 (563)
Q Consensus 134 ~~~~----------~~~~~l~~~~~~~~-----~~--~~~~~~~~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~ 196 (563)
.+.. ...+++.+.+.... .. ....+.+.++......+...|.+.+++.|++++++++|++|..
T Consensus 139 ~d~~l~~~~~~~s~~~i~wl~~~Gv~~~~~~~~~g~~~~r~~~p~~g~~~g~~l~~~L~~~~~~~gv~i~~~t~v~~l~~ 218 (506)
T PRK06481 139 NDKALLRYFVDNSASAIDWLDSMGIKLDNLTITGGMSEKRTHRPHDGSAVGGYLVDGLLKNVQERKIPLFVNADVTKITE 218 (506)
T ss_pred CCHHHHHHHHhccHHHHHHHHHcCceEeecccCCCCCCCceeccCCCCCChHHHHHHHHHHHHHcCCeEEeCCeeEEEEe
Confidence 0001 11223333222110 00 0011122233334456788888889999999999999999987
Q ss_pred cCCCCcEEEEEEEECCCCcEEEEEeCeEEEccCcChhh
Q 008503 197 DEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDS 234 (563)
Q Consensus 197 ~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~~s~~ 234 (563)
++ ++|+||.+.. .+++...+.|+.||+|+|.|+..
T Consensus 219 ~~--g~V~Gv~~~~-~~g~~~~i~a~~VVlAtGG~~~n 253 (506)
T PRK06481 219 KD--GKVTGVKVKI-NGKETKTISSKAVVVTTGGFGAN 253 (506)
T ss_pred cC--CEEEEEEEEe-CCCeEEEEecCeEEEeCCCcccC
Confidence 54 7899998865 34445679999999999998764
No 34
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.63 E-value=5.4e-14 Score=147.80 Aligned_cols=295 Identities=18% Similarity=0.176 Sum_probs=152.2
Q ss_pred CCccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhhhc
Q 008503 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQA 149 (563)
Q Consensus 70 ~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 149 (563)
.+|||+|||||++|+++|+.|++.|++|+|+||+...+.-.....++.... ++....... . . +...+.. ...
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~---l~~l~~~~~--~-~-i~~~v~~-~~~ 73 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRA---LEELIPDFD--E-E-IERKVTG-ARI 73 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhh---HHHhCCCcc--h-h-hheeeee-eEE
Confidence 469999999999999999999999999999999864322111111111111 111100000 0 0 0000000 000
Q ss_pred ccCCcceEEE---ecCceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEE
Q 008503 150 KDRSLKGAVV---YYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVN 226 (563)
Q Consensus 150 ~~~~~~~~~~---~~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~ 226 (563)
..+.-...+. .....++...+...|++.|++.|++++.++.|+.+..+++ +.+.++ . .+. .+++||+||.
T Consensus 74 ~~~~~~~~~~~~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~-~~~~~~-~----~~~-~e~~a~~vI~ 146 (396)
T COG0644 74 YFPGEKVAIEVPVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDD-GVVVGV-R----AGD-DEVRAKVVID 146 (396)
T ss_pred EecCCceEEecCCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCC-cEEEEE-E----cCC-EEEEcCEEEE
Confidence 0011111111 1134567888999999999999999999999999998874 444333 2 232 6899999999
Q ss_pred ccCcChhhhhhhhcCCCCCeeecCCceEEEecCCcCCCCcccc-cc-cCCCCcEEEEeecCC-cEEeeecCCCCCCCCCC
Q 008503 227 AAGPFCDSVRKLADQNVQPMICPSSGVHIVLPDYYSPEGMGLI-VP-KTKDGRVVFMLPWLG-RTVAGTTDSDTVITLLP 303 (563)
Q Consensus 227 AtG~~s~~l~~~~g~~~~~~v~~~~G~~~~~~~~~~~~~~~~~-~~-~~~~g~~~~~~P~~g-~~~iG~t~~~~~~~~~~ 303 (563)
|+|..+. +.+.++......-.-.-++.-++..+.......++ .+ ....+.+.|++|..+ ..-+|....... ...
T Consensus 147 AdG~~s~-l~~~lg~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Gy~wifP~~~~~~~VG~g~~~~~--~~~ 223 (396)
T COG0644 147 ADGVNSA-LARKLGLKDRKPEDYAIGVKEVIEVPDDGDVEEFLYGPLDVGPGGYGWIFPLGDGHANVGIGVLLDD--PSL 223 (396)
T ss_pred CCCcchH-HHHHhCCCCCChhheeEEeEEEEecCCCCceEEEEecCCccCCCceEEEEECCCceEEEEEEEecCC--cCC
Confidence 9999775 55555544110001111222222222111111111 11 233456788999864 466776543211 111
Q ss_pred CCCHHHHHHHHHHHhhhc--cCCCCCCCcccceeeeeecccCCCCCCCCCccccceEee-cCCCeEE-EecChhhhhHHH
Q 008503 304 EPHEDEIQFILDAISDYL--NVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCE-DFPGLVT-ITGGKWTTYRSM 379 (563)
Q Consensus 304 ~~~~~~~~~ll~~~~~~~--~~~l~~~~v~~~~aG~rp~~~d~~~~~~~~~~~~~~i~~-~~~gl~~-~~Gg~~t~a~~~ 379 (563)
... . ..++...... ...+...+++..-+|..|...-.. .+ +..+-++.. +..|+++ .+|++...|...
T Consensus 224 ~~~---~-~~l~~f~~~~~~~~~~~~~~~~~~~~~~ip~~g~~~--~~--~~~~~~~lvGDAAg~v~p~~g~Gi~~A~~s 295 (396)
T COG0644 224 SPF---L-ELLERFKEHPAIRKLLLGGKILEYAAGGIPEGGPAS--RP--LVGDGVLLVGDAAGFVNPLTGEGIRYAIKS 295 (396)
T ss_pred Cch---H-HHHHHHHhCcccchhccCCceEEEeeeecccCCcCC--Cc--cccCCEEEEeccccCCCCcccCcHHHHHHH
Confidence 111 1 2222222211 011111345566667777642111 10 223334443 3457665 556666666666
Q ss_pred HHHHHHHHHHc
Q 008503 380 AEDAVNAAIKS 390 (563)
Q Consensus 380 Ae~v~~~i~~~ 390 (563)
|..+++.|.+.
T Consensus 296 g~~Aa~~i~~~ 306 (396)
T COG0644 296 GKLAAEAIAEA 306 (396)
T ss_pred HHHHHHHHHHH
Confidence 66666666654
No 35
>PRK06185 hypothetical protein; Provisional
Probab=99.63 E-value=6.9e-14 Score=147.84 Aligned_cols=233 Identities=18% Similarity=0.157 Sum_probs=132.0
Q ss_pred CCCCccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhh
Q 008503 68 NSNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERK 147 (563)
Q Consensus 68 ~~~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~ 147 (563)
...++||+|||||++|+++|+.|++.|++|+|||+.+... ...+...+.+...+.+++. .. ++.+.+..
T Consensus 3 ~~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~-~~~r~~~l~~~s~~~L~~l----G~------~~~~~~~~ 71 (407)
T PRK06185 3 EVETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFL-RDFRGDTVHPSTLELMDEL----GL------LERFLELP 71 (407)
T ss_pred ccccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccC-ccccCceeChhHHHHHHHc----CC------hhHHhhcc
Confidence 4567999999999999999999999999999999984211 1122233333333444321 10 11111100
Q ss_pred h-------cccCCc-ceEE--------EecCceechHHHHHHHHHHHHH-CCCEEEcCcEEEEEEEcCCCCcEEEEEEEE
Q 008503 148 Q-------AKDRSL-KGAV--------VYYDGQMNDSRLNVGLALTAAL-AGAAVLNHAEVISLIKDEASNRIIGARIRN 210 (563)
Q Consensus 148 ~-------~~~~~~-~~~~--------~~~~~~~~~~~l~~~l~~~a~~-~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d 210 (563)
. ....+- .... .+....+....+...|.+.+.+ .|++++++++|+++..++ +++++|.+..
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~--~~v~~v~~~~ 149 (407)
T PRK06185 72 HQKVRTLRFEIGGRTVTLADFSRLPTPYPYIAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEEG--GRVTGVRART 149 (407)
T ss_pred cceeeeEEEEECCeEEEecchhhcCCCCCcEEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEeC--CEEEEEEEEc
Confidence 0 000000 0000 0111234556677778777766 489999999999998875 5777777653
Q ss_pred CCCCcEEEEEeCeEEEccCcChhhhhhhhcCCCCCeeecCCceEEEecCCcCCCCcccccccCCCCcEEEEeecCCcEEe
Q 008503 211 NLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWLGRTVA 290 (563)
Q Consensus 211 ~~~g~~~~i~A~~VI~AtG~~s~~l~~~~g~~~~~~v~~~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~P~~g~~~i 290 (563)
.++ ..+++|+.||.|+|.+|. +++..+...+ ..+.++..+.+.....+......+....++..+.++|..+...+
T Consensus 150 -~~g-~~~i~a~~vI~AdG~~S~-vr~~~gi~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~llP~~~~~~i 224 (407)
T PRK06185 150 -PDG-PGEIRADLVVGADGRHSR-VRALAGLEVR--EFGAPMDVLWFRLPREPDDPESLMGRFGPGQGLIMIDRGDYWQC 224 (407)
T ss_pred -CCC-cEEEEeCEEEECCCCchH-HHHHcCCCcc--ccCCCceeEEEecCCCCCCCcccceEecCCcEEEEEcCCCeEEE
Confidence 233 257999999999999996 7777776533 33444444433322111111111111223445667787665556
Q ss_pred eecCCCCCCCCCCCCCHHHHHHHHHHHhhhc
Q 008503 291 GTTDSDTVITLLPEPHEDEIQFILDAISDYL 321 (563)
Q Consensus 291 G~t~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 321 (563)
+.+.... ........+.+.+.+.+...+
T Consensus 225 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 252 (407)
T PRK06185 225 GYVIPKG---GYAALRAAGLEAFRERVAELA 252 (407)
T ss_pred EEEecCC---CchhhhhhhHHHHHHHHHHhC
Confidence 6554321 111233444566666666655
No 36
>PLN02697 lycopene epsilon cyclase
Probab=99.63 E-value=1.2e-13 Score=148.24 Aligned_cols=286 Identities=13% Similarity=0.105 Sum_probs=154.4
Q ss_pred CCCccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhhh
Q 008503 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQ 148 (563)
Q Consensus 69 ~~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 148 (563)
...|||+|||||++|+++|+.|++.|++|+|||+...... +.|++.. . +.++...+ .+..... ...
T Consensus 106 ~~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~----n~GvW~~---~----l~~lgl~~--~i~~~w~-~~~ 171 (529)
T PLN02697 106 DGTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTN----NYGVWED---E----FKDLGLED--CIEHVWR-DTI 171 (529)
T ss_pred cCcccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCC----ccccchh---H----HHhcCcHH--HHHhhcC-CcE
Confidence 4469999999999999999999999999999998632111 1222211 0 11111100 0000000 000
Q ss_pred cccCCcceE-EEecCceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEc
Q 008503 149 AKDRSLKGA-VVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNA 227 (563)
Q Consensus 149 ~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~A 227 (563)
...+..... .....+.++...+...|.+.+.+.|+++ .+++|+++..+++ .+..+.. .++ .++.|+.||.|
T Consensus 172 v~~~~~~~~~~~~~Yg~V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~--~~~vv~~---~dG--~~i~A~lVI~A 243 (529)
T PLN02697 172 VYLDDDKPIMIGRAYGRVSRTLLHEELLRRCVESGVSY-LSSKVDRITEASD--GLRLVAC---EDG--RVIPCRLATVA 243 (529)
T ss_pred EEecCCceeeccCcccEEcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEEcCC--cEEEEEE---cCC--cEEECCEEEEC
Confidence 000000000 1111245888889999999999999998 5679999987653 3332322 233 47999999999
Q ss_pred cCcChhhhhhhhcCCCCCeeecCCceEEEecCCcCCCCcccccc------------cCCCCcEEEEeecC-CcEEe-eec
Q 008503 228 AGPFCDSVRKLADQNVQPMICPSSGVHIVLPDYYSPEGMGLIVP------------KTKDGRVVFMLPWL-GRTVA-GTT 293 (563)
Q Consensus 228 tG~~s~~l~~~~g~~~~~~v~~~~G~~~~~~~~~~~~~~~~~~~------------~~~~g~~~~~~P~~-g~~~i-G~t 293 (563)
+|.+|..+............+...|..+.++....+....+++. +.....++|++|.. +...| ++.
T Consensus 244 dG~~S~rl~~~~~~~~~~~~Q~a~Gi~ve~~~~~~d~~~~vlMD~r~~~~~~~~~~~~~~p~FlYvlP~~~~~~~VE~T~ 323 (529)
T PLN02697 244 SGAASGRLLQYEVGGPRVCVQTAYGVEVEVENNPYDPSLMVFMDYRDYFKEKVSHLEAEYPTFLYAMPMSSTRVFFEETC 323 (529)
T ss_pred CCcChhhhhccccCCCCcccEEEEEEEEEecCCCCCcchheeeccccccccccccccCCCceEEEEeecCCCeEEEEEee
Confidence 99999544332111111225667788877765333322222211 01113578999985 56667 443
Q ss_pred CCCCCCCCCCCCCHHHHH-HHHHHHhhhccCCCCCCCcccceeeeeecccCCCCCCCCCccccceEeec-CCCeEE-Eec
Q 008503 294 DSDTVITLLPEPHEDEIQ-FILDAISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCED-FPGLVT-ITG 370 (563)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~-~ll~~~~~~~~~~l~~~~v~~~~aG~rp~~~d~~~~~~~~~~~~~~i~~~-~~gl~~-~~G 370 (563)
... ....+.+.++ +|.+.+... .+....++..-.|+.|+..+ .... .+.++..+ ..|+++ .+|
T Consensus 324 l~~-----~~~l~~~~l~~~L~~~l~~~---Gi~~~~i~~~E~g~iPm~g~-----~~~~-~~~vl~vG~AAG~vhPsTG 389 (529)
T PLN02697 324 LAS-----KDAMPFDLLKKRLMSRLETM---GIRILKTYEEEWSYIPVGGS-----LPNT-EQKNLAFGAAASMVHPATG 389 (529)
T ss_pred ecc-----CCCCCHHHHHHHHHHHHHhC---CCCcceEEEEEeeeecCCCC-----Cccc-CCCeeEeehhhcCCCCchh
Confidence 211 1122333443 333333332 34556677888888898421 1111 23344443 467777 556
Q ss_pred ChhhhhHHHHHHHHHHHHHc
Q 008503 371 GKWTTYRSMAEDAVNAAIKS 390 (563)
Q Consensus 371 g~~t~a~~~Ae~v~~~i~~~ 390 (563)
+.+..+...|..+++.|.+.
T Consensus 390 y~v~~~l~~A~~~A~~ia~~ 409 (529)
T PLN02697 390 YSVVRSLSEAPKYASVIARI 409 (529)
T ss_pred hhHHHHHHhHHHHHHHHHHH
Confidence 55644444444444444443
No 37
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.60 E-value=1.7e-13 Score=137.93 Aligned_cols=282 Identities=17% Similarity=0.159 Sum_probs=145.8
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhhhc-c
Q 008503 72 LDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQA-K 150 (563)
Q Consensus 72 ~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~ 150 (563)
|||+|||||++|+++|+.|++.|++|+||||.+.... ......+.+.....+.. ..... .... ..... .
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~-~~~~~~~~~~~~~~l~~-------~~~~~-~~~~-~~~~~~~ 70 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRY-KPCGGALSPRVLEELDL-------PLELI-VNLV-RGARFFS 70 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCc-ccccCccCHhHHHHhcC-------Cchhh-hhhe-eeEEEEc
Confidence 7999999999999999999999999999999964322 11112222111111110 00000 0000 00000 0
Q ss_pred cCCcceEEE---ecCceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEc
Q 008503 151 DRSLKGAVV---YYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNA 227 (563)
Q Consensus 151 ~~~~~~~~~---~~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~A 227 (563)
...-..... .....++...+...|.+.+.+.|++++++++|+++..+++ .+ .+.+ .++ ..+++||+||+|
T Consensus 71 ~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~--~~-~~~~---~~~-~~~~~a~~vv~a 143 (295)
T TIGR02032 71 PNGDSVEIPIETELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDD--RV-VVIV---RGG-EGTVTAKIVIGA 143 (295)
T ss_pred CCCcEEEeccCCCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCC--EE-EEEE---cCc-cEEEEeCEEEEC
Confidence 000000000 1122467778888999999999999999999999987753 33 2333 222 357999999999
Q ss_pred cCcChhhhhhhhcCCCCCeeecCCceEEEecCCc--CCCC-cccccc-cCCCCcEEEEeecCC-cEEeeecCCCCCCCCC
Q 008503 228 AGPFCDSVRKLADQNVQPMICPSSGVHIVLPDYY--SPEG-MGLIVP-KTKDGRVVFMLPWLG-RTVAGTTDSDTVITLL 302 (563)
Q Consensus 228 tG~~s~~l~~~~g~~~~~~v~~~~G~~~~~~~~~--~~~~-~~~~~~-~~~~g~~~~~~P~~g-~~~iG~t~~~~~~~~~ 302 (563)
+|.++. +.+..+..... .....+....++.+. .... ..+++. ...++.++|++|..+ ...+|.+..... .
T Consensus 144 ~G~~s~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~v~~~~~~~~---~ 218 (295)
T TIGR02032 144 DGSRSI-VAKKLGLRKEP-RELGVAARAEVEMPDEEVDEDFVEVYIDRGISPGGYGWVFPKGDGTANVGVGSRSAE---E 218 (295)
T ss_pred CCcchH-HHHhcCCCCCC-cceeeEEEEEEecCCcccCcceEEEEcCCCcCCCceEEEEeCCCCeEEEeeeeccCC---C
Confidence 999885 66655544211 111122222232221 1111 112221 112356788999864 466775543211 1
Q ss_pred CCCCHHHHHHHHHHHhhhccCCCCCCCcccceeeeeecccCCCCCCCCCccccceEee-cCCCeEEEe-cChhhhhHHHH
Q 008503 303 PEPHEDEIQFILDAISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCE-DFPGLVTIT-GGKWTTYRSMA 380 (563)
Q Consensus 303 ~~~~~~~~~~ll~~~~~~~~~~l~~~~v~~~~aG~rp~~~d~~~~~~~~~~~~~~i~~-~~~gl~~~~-Gg~~t~a~~~A 380 (563)
..+.+..++...+.+ +.+...++...+.+..|..... .....+.++.. +..+.+... |.++..+-.-|
T Consensus 219 ----~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~v~liGDAA~~~~P~~g~G~~~a~~~a 288 (295)
T TIGR02032 219 ----GEDLKKYLKDFLARR-PELKDAETVEVIGAPIPIGRPD-----DKTVRGNVLLVGDAAGHVKPLTGEGIYYAMRSG 288 (295)
T ss_pred ----CCCHHHHHHHHHHhC-cccccCcEEeeeceeeccCCCC-----CccccCCEEEEecccCCCCCccCCcHHHHHHHH
Confidence 122333444443344 3455555666666666654211 11122333333 234555533 44555555555
Q ss_pred HHHHH
Q 008503 381 EDAVN 385 (563)
Q Consensus 381 e~v~~ 385 (563)
..+++
T Consensus 289 ~~aa~ 293 (295)
T TIGR02032 289 DVAAE 293 (295)
T ss_pred HHHHh
Confidence 55543
No 38
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.59 E-value=6.3e-14 Score=137.67 Aligned_cols=151 Identities=23% Similarity=0.224 Sum_probs=100.1
Q ss_pred CCCCccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCC-CCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHh
Q 008503 68 NSNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSS-GTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEER 146 (563)
Q Consensus 68 ~~~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~-g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~ 146 (563)
+..++||+|||||++|+++|+.|++.|++|+|+|+....+ +.++ .+.+..... .+ ....+.+.+.
T Consensus 22 ~~~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~--gg~~~~~~~-v~-----------~~~~~~l~~~ 87 (257)
T PRK04176 22 DYLEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWG--GGMLFNKIV-VQ-----------EEADEILDEF 87 (257)
T ss_pred HhccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCcccc--Ccccccccc-ch-----------HHHHHHHHHC
Confidence 4667999999999999999999999999999999986333 2221 111100000 00 0112222222
Q ss_pred hhcccCCcceEEEecCceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECC------CCcEEEEE
Q 008503 147 KQAKDRSLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNL------SGKEFDTY 220 (563)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~------~g~~~~i~ 220 (563)
+..... . ......+++..+...|.+.+.+.|+++++++.|.++..+++ ++|.||.+.+.. ..+...++
T Consensus 88 gv~~~~-~----~~g~~~vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~-g~V~Gvv~~~~~v~~~g~~~~~~~i~ 161 (257)
T PRK04176 88 GIRYKE-V----EDGLYVADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILRED-PRVAGVVINWTPVEMAGLHVDPLTIE 161 (257)
T ss_pred CCCcee-e----cCcceeccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCC-CcEEEEEEccccccccCCCCCcEEEE
Confidence 211000 0 00112467889999999999999999999999999987654 589998775311 11236799
Q ss_pred eCeEEEccCcChhhhhhh
Q 008503 221 AKVVVNAAGPFCDSVRKL 238 (563)
Q Consensus 221 A~~VI~AtG~~s~~l~~~ 238 (563)
|+.||+|||.++.....+
T Consensus 162 Ak~VI~ATG~~a~v~~~l 179 (257)
T PRK04176 162 AKAVVDATGHDAEVVSVL 179 (257)
T ss_pred cCEEEEEeCCCcHHHHHH
Confidence 999999999999755443
No 39
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=99.59 E-value=3.9e-13 Score=137.01 Aligned_cols=189 Identities=16% Similarity=0.136 Sum_probs=128.7
Q ss_pred CCccEEEECCchHHHHHHHHHHHC--CCcEEEEeccC-CCCCCc--cCCCCccccchh---hHHH---------------
Q 008503 70 NPLDILVIGGGATGCGVALDAATR--GLRVGLVERED-FSSGTS--SRSTKLIHGGVR---YLEK--------------- 126 (563)
Q Consensus 70 ~~~DVvIIGaGiaG~~~A~~la~~--G~~V~llEk~~-~~~g~s--~~~~~~~~~g~~---~~~~--------------- 126 (563)
.++|||+|||||.|++.++.|++. .++|.|+||-+ ++..+| ..|+|-.|.+.- |..+
T Consensus 2 ~~~DVvLIGgGImsaTL~~~L~~l~p~~~I~i~Erl~~~A~ESS~~wNNAGTGHaa~cElNYTpe~~dGsidi~KA~~In 81 (488)
T PF06039_consen 2 KEYDVVLIGGGIMSATLGYLLKELEPDWSIAIFERLDSVALESSNAWNNAGTGHAALCELNYTPEKADGSIDISKAVKIN 81 (488)
T ss_pred CceeEEEECchHHHHHHHHHHHHhCCCCeEEEEEecCcchhhcCCCccccccchhhhhhccCCCCcCCCcccHHHHHHHH
Confidence 468999999999999999999987 68999999985 554444 567888886541 2110
Q ss_pred --------Hhh----c--cC-----------------cccHHHHHHH---HHHhhhc-----------------------
Q 008503 127 --------AVF----N--LD-----------------YGQLKLVFHA---LEERKQA----------------------- 149 (563)
Q Consensus 127 --------~~~----~--~~-----------------~~~~~~~~~~---l~~~~~~----------------------- 149 (563)
.+. + +. ..+...+.+. +.+...+
T Consensus 82 eqFevsrqfWs~lv~~g~l~~p~~FI~~~PHmsfv~Ge~~v~fLkkR~~~l~~~~lF~~Me~sed~~~i~~w~PLvm~gR 161 (488)
T PF06039_consen 82 EQFEVSRQFWSYLVENGILQNPESFINPVPHMSFVWGEENVDFLKKRYEALKEHPLFPGMEFSEDPEQIAEWAPLVMEGR 161 (488)
T ss_pred HHHHHHHHHHHHHHHCCCCCChHHhccCCCceEEEEChHhHHHHHHHHHHHhcCCCCCCcEEccCHHHHHhhCCeecCCC
Confidence 000 0 00 0011111111 1111000
Q ss_pred -ccCCcceEEEecCceechHHHHHHHHHHHHHC-CCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEc
Q 008503 150 -KDRSLKGAVVYYDGQMNDSRLNVGLALTAALA-GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNA 227 (563)
Q Consensus 150 -~~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~-G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~A 227 (563)
..+.+..........+|-..++..|.+.+.+. |++++++++|++|.+.++ .-|.|.+.|..+++..+++|+.|++.
T Consensus 162 ~~~e~vAat~~~~GTDVnFG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~d--g~W~v~~~~~~~~~~~~v~a~FVfvG 239 (488)
T PF06039_consen 162 DPSEPVAATRVEEGTDVNFGALTRQLVEYLQKQKGFELHLNHEVTDIKRNGD--GRWEVKVKDLKTGEKREVRAKFVFVG 239 (488)
T ss_pred CCCCceeeeecCCCccccHHHHHHHHHHHHHhCCCcEEEecCEeCeeEECCC--CCEEEEEEecCCCCeEEEECCEEEEC
Confidence 11222222233344577788999999999887 999999999999999875 34678888877888889999999999
Q ss_pred cCcChhhhhhhhcCCC--CCeeecCCceEEEecCC
Q 008503 228 AGPFCDSVRKLADQNV--QPMICPSSGVHIVLPDY 260 (563)
Q Consensus 228 tG~~s~~l~~~~g~~~--~~~v~~~~G~~~~~~~~ 260 (563)
+|.+|-.+++..|.+. .....|+.|+.++.+.+
T Consensus 240 AGG~aL~LLqksgi~e~~gyggfPVsG~fl~~~n~ 274 (488)
T PF06039_consen 240 AGGGALPLLQKSGIPEGKGYGGFPVSGQFLRCKNP 274 (488)
T ss_pred CchHhHHHHHHcCChhhcccCCCcccceEEecCCH
Confidence 9999998888877631 22367899998887653
No 40
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=99.54 E-value=2.7e-12 Score=136.35 Aligned_cols=290 Identities=19% Similarity=0.141 Sum_probs=145.3
Q ss_pred CCCCccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhh
Q 008503 68 NSNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERK 147 (563)
Q Consensus 68 ~~~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~ 147 (563)
+..+|||+|||||++|+++|+.|++.|++|+||||.... ...+++.+. ...+++ +...+ ..+...+....
T Consensus 36 ~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~~---~k~cgg~i~--~~~l~~----lgl~~-~~~~~~i~~~~ 105 (450)
T PLN00093 36 SGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLDN---AKPCGGAIP--LCMVGE----FDLPL-DIIDRKVTKMK 105 (450)
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC---CCCcccccc--HhHHhh----hcCcH-HHHHHHhhhhe
Confidence 356799999999999999999999999999999998421 111222221 112211 11110 11111111111
Q ss_pred hcccCCcceEEE--------ecCceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEEC----CCCc
Q 008503 148 QAKDRSLKGAVV--------YYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNN----LSGK 215 (563)
Q Consensus 148 ~~~~~~~~~~~~--------~~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~----~~g~ 215 (563)
. ..+.-. .+. .+-+.++...+...|.+.|.+.|++++.+ .++++..+.+.+..+.|.+.+. .+++
T Consensus 106 ~-~~p~~~-~v~~~~~~~~~~~~~~v~R~~~d~~L~~~A~~~Ga~~~~~-~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~ 182 (450)
T PLN00093 106 M-ISPSNV-AVDIGKTLKPHEYIGMVRREVLDSFLRERAQSNGATLING-LFTRIDVPKDPNGPYVIHYTSYDSGSGAGT 182 (450)
T ss_pred E-ecCCce-EEEecccCCCCCeEEEecHHHHHHHHHHHHHHCCCEEEec-eEEEEEeccCCCCcEEEEEEeccccccCCC
Confidence 1 111100 110 01124688888889999999999999875 5777764321122334555431 1144
Q ss_pred EEEEEeCeEEEccCcChhhhhhhhcCCCCCeeecCCceEEE--ecCCcC--CCCc-ccccc-cCCCCcEEEEeecCCcEE
Q 008503 216 EFDTYAKVVVNAAGPFCDSVRKLADQNVQPMICPSSGVHIV--LPDYYS--PEGM-GLIVP-KTKDGRVVFMLPWLGRTV 289 (563)
Q Consensus 216 ~~~i~A~~VI~AtG~~s~~l~~~~g~~~~~~v~~~~G~~~~--~~~~~~--~~~~-~~~~~-~~~~g~~~~~~P~~g~~~ 289 (563)
..+++|++||.|+|.+|. +++.++..... ...+.... ++.... .... .+++. ....+.+.|++|..+..-
T Consensus 183 ~~~v~a~~VIgADG~~S~-vrr~lg~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~Y~WifP~g~~~~ 258 (450)
T PLN00093 183 PKTLEVDAVIGADGANSR-VAKDIDAGDYD---YAIAFQERIKIPDDKMEYYEDLAEMYVGDDVSPDFYGWVFPKCDHVA 258 (450)
T ss_pred ccEEEeCEEEEcCCcchH-HHHHhCCCCcc---eeEEEEEEEeCChhhccccCCeEEEEeCCCCCCCceEEEEECCCcEE
Confidence 457999999999999884 56665543111 11122222 222110 0111 11111 112344668899877666
Q ss_pred eeecCCCCCCCCCCCCCHHHH-HHHHHHHhhhccCCCCCCCcccceeeeeecccCCCCCCCCCccccceEee-cCCCeEE
Q 008503 290 AGTTDSDTVITLLPEPHEDEI-QFILDAISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCE-DFPGLVT 367 (563)
Q Consensus 290 iG~t~~~~~~~~~~~~~~~~~-~~ll~~~~~~~~~~l~~~~v~~~~aG~rp~~~d~~~~~~~~~~~~~~i~~-~~~gl~~ 367 (563)
||..... . . .+.... +.+.+.... .+...+++...++.-|+.+- .+...+.++.. +..|++.
T Consensus 259 VG~g~~~--~--~--~~~~~~~~~l~~~~~~----~l~~~~~~~~~~~~ip~~~~------~~~~~~~vlLvGDAAg~v~ 322 (450)
T PLN00093 259 VGTGTVV--N--K--PAIKKYQRATRNRAKD----KIAGGKIIRVEAHPIPEHPR------PRRVRGRVALVGDAAGYVT 322 (450)
T ss_pred EEEEEcc--C--C--CChHHHHHHHHHHhhh----hcCCCeEEEEEEEEcccccc------cceeCCCcEEEeccccCCC
Confidence 7763211 0 0 111122 222222211 12233445555554454211 01112234333 3467776
Q ss_pred -EecChhhhhHHHHHHHHHHHHHc
Q 008503 368 -ITGGKWTTYRSMAEDAVNAAIKS 390 (563)
Q Consensus 368 -~~Gg~~t~a~~~Ae~v~~~i~~~ 390 (563)
++|+++..+..-|..+++.+.+.
T Consensus 323 P~tGeGI~~Am~sg~~AAe~i~~~ 346 (450)
T PLN00093 323 KCSGEGIYFAAKSGRMCAEAIVEG 346 (450)
T ss_pred ccccccHHHHHHHHHHHHHHHHHH
Confidence 66766666666666666655543
No 41
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=99.50 E-value=9.7e-12 Score=130.53 Aligned_cols=287 Identities=18% Similarity=0.158 Sum_probs=145.5
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhhhccc
Q 008503 72 LDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQAKD 151 (563)
Q Consensus 72 ~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 151 (563)
|||+|||||++|+++|+.|++.|++|+|+|+... ....+++.+.. +.+++ +...+ ..+...+........
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~~---~~~~cg~~i~~--~~l~~----l~i~~-~~~~~~~~~~~~~~~ 70 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERALS---NIKPCGGAIPP--CLIEE----FDIPD-SLIDRRVTQMRMISP 70 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCCC---CcCcCcCCcCH--hhhhh----cCCch-HHHhhhcceeEEEcC
Confidence 7999999999999999999999999999999821 11112222221 11111 11100 011011100000011
Q ss_pred CCcceEE-Ee----cCceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEEC---CCCcEEEEEeCe
Q 008503 152 RSLKGAV-VY----YDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNN---LSGKEFDTYAKV 223 (563)
Q Consensus 152 ~~~~~~~-~~----~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~---~~g~~~~i~A~~ 223 (563)
....-.. .+ +.+.++...+...|.+.+.+.|++++.. .|+++..++ +.+ .|.+.+. .+++..+++|++
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~r~~fd~~L~~~a~~~G~~v~~~-~v~~v~~~~--~~~-~v~~~~~~~~~~~~~~~i~a~~ 146 (388)
T TIGR02023 71 SRVPIKVTIPSEDGYVGMVRREVFDSYLRERAQKAGAELIHG-LFLKLERDR--DGV-TLTYRTPKKGAGGEKGSVEADV 146 (388)
T ss_pred CCceeeeccCCCCCceEeeeHHHHHHHHHHHHHhCCCEEEee-EEEEEEEcC--CeE-EEEEEeccccCCCcceEEEeCE
Confidence 1100000 01 1124677788889999999999999765 699987765 333 4555431 123345799999
Q ss_pred EEEccCcChhhhhhhhcCCCCCeeecCCceEEEecCCc--CCCCc-ccccc-cCCCCcEEEEeecCCcEEeeecCCCCCC
Q 008503 224 VVNAAGPFCDSVRKLADQNVQPMICPSSGVHIVLPDYY--SPEGM-GLIVP-KTKDGRVVFMLPWLGRTVAGTTDSDTVI 299 (563)
Q Consensus 224 VI~AtG~~s~~l~~~~g~~~~~~v~~~~G~~~~~~~~~--~~~~~-~~~~~-~~~~g~~~~~~P~~g~~~iG~t~~~~~~ 299 (563)
||.|+|.+|. +++.++...+........+++.++... ..... .+++. ....+.+.|++|..+...+|..... .
T Consensus 147 VI~AdG~~S~-v~r~lg~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~y~wv~P~~~~~~vg~~~~~--~ 223 (388)
T TIGR02023 147 VIGADGANSP-VAKELGLPKNLPRVIAYQERIKLPDDKMAYYEELADVYYGGEVSPDFYGWVFPKGDHIAVGTGTGT--H 223 (388)
T ss_pred EEECCCCCcH-HHHHcCCCCCCcEEEEEEEEecCCchhcccCCCeEEEEECCCcCCCceEEEeeCCCeeEEeEEECC--C
Confidence 9999999885 556665442111111011122222110 11111 11221 1223456788998766556653111 0
Q ss_pred CCCCCCCHHHHHHHHHHHhhhccCCCCCCCcccceeeeeecccCCCCCCCCCccccceEee-cCCCeEE-EecChhhhhH
Q 008503 300 TLLPEPHEDEIQFILDAISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCE-DFPGLVT-ITGGKWTTYR 377 (563)
Q Consensus 300 ~~~~~~~~~~~~~ll~~~~~~~~~~l~~~~v~~~~aG~rp~~~d~~~~~~~~~~~~~~i~~-~~~gl~~-~~Gg~~t~a~ 377 (563)
..+ .+.+++.+.+.+ .+...+++..+++.-|+.+- .....+.++.. +..|++. ++|+++..+.
T Consensus 224 ----~~~---~~~~~~~l~~~~--~~~~~~~~~~~~~~ip~~~~------~~~~~~~v~lvGDAAg~v~P~tG~GI~~A~ 288 (388)
T TIGR02023 224 ----GFD---AKQLQANLRRRA--GLDGGQTIRREAAPIPMKPR------PRWDFGRAMLVGDAAGLVTPASGEGIYFAM 288 (388)
T ss_pred ----CCC---HHHHHHHHHHhh--CCCCceEeeeeeEecccccc------ccccCCCEEEEeccccCcCCcccccHHHHH
Confidence 112 233334443332 12223344445555554211 01112334444 3467776 5566777667
Q ss_pred HHHHHHHHHHHHc
Q 008503 378 SMAEDAVNAAIKS 390 (563)
Q Consensus 378 ~~Ae~v~~~i~~~ 390 (563)
..|..+++.+.+.
T Consensus 289 ~sg~~aa~~i~~~ 301 (388)
T TIGR02023 289 KSGQMAAQAIAEY 301 (388)
T ss_pred HHHHHHHHHHHHH
Confidence 7777777666654
No 42
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=99.50 E-value=7.5e-12 Score=131.48 Aligned_cols=284 Identities=20% Similarity=0.163 Sum_probs=150.4
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhhhcccC
Q 008503 73 DILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQAKDR 152 (563)
Q Consensus 73 DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 152 (563)
||+|||||++|+++|+.|++.|++|+|||+++..++. .+.+++...+ + ++... ..+............+
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~--~~~~~~~~~~---~----~~~~~--~~~~~~~~~~~~~~~~ 69 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGN--HTYGVWDDDL---S----DLGLA--DCVEHVWPDVYEYRFP 69 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCC--ccccccHhhh---h----hhchh--hHHhhcCCCceEEecC
Confidence 8999999999999999999999999999998522221 1111111111 0 00000 0000000000000000
Q ss_pred CcceEEEecCceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccCcCh
Q 008503 153 SLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 232 (563)
Q Consensus 153 ~~~~~~~~~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~~s 232 (563)
.......+....++...+...+.+.+.+.|++++ .++|+.+..++ +..+.|++ .++ .+++|+.||+|+|.++
T Consensus 70 ~~~~~~~~~~~~i~~~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~--~~~~~v~~---~~g--~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 70 KQPRKLGTAYGSVDSTRLHEELLQKCPEGGVLWL-ERKAIHAEADG--VALSTVYC---AGG--QRIQARLVIDARGFGP 141 (388)
T ss_pred CcchhcCCceeEEcHHHHHHHHHHHHHhcCcEEE-ccEEEEEEecC--CceeEEEe---CCC--CEEEeCEEEECCCCch
Confidence 0000011223357888899999999998999996 55888887663 23344543 233 3799999999999988
Q ss_pred hhhhhh-hcCCCCCeeecCCceEEEecCCcCCCCccccccc--CC-------CCc--EEEEeecC-CcEEeeecCCCCCC
Q 008503 233 DSVRKL-ADQNVQPMICPSSGVHIVLPDYYSPEGMGLIVPK--TK-------DGR--VVFMLPWL-GRTVAGTTDSDTVI 299 (563)
Q Consensus 233 ~~l~~~-~g~~~~~~v~~~~G~~~~~~~~~~~~~~~~~~~~--~~-------~g~--~~~~~P~~-g~~~iG~t~~~~~~ 299 (563)
.+... .+.. ..+....|..+.++....+....+++.. .. ... ++|++|.. +..+++.+...
T Consensus 142 -~~~~~~~~~~--~~~q~~~G~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~f~~~lP~~~~~~~v~~~~~~--- 215 (388)
T TIGR01790 142 -LVQYVRFPLN--VGFQVAYGVEARLSRPPHGPSSMVIMDARVDQLAAPELKGYRPTFLYAMPLGSTRVFIEETSLA--- 215 (388)
T ss_pred -hcccccCCCC--ceEEEEEEEEEEEcCCCCCCCceEEEeccccccccccccCCCCceEEEeecCCCeEEEEecccc---
Confidence 22211 1211 1244566777777643322222222210 11 123 78899975 56667755321
Q ss_pred CCCCCCCHHHHHHHHHHHhhhccCCCCCCCcccceeeeeecccCCCCCCCCCccccceEeec-CCCeEE-EecChhhhhH
Q 008503 300 TLLPEPHEDEIQFILDAISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCED-FPGLVT-ITGGKWTTYR 377 (563)
Q Consensus 300 ~~~~~~~~~~~~~ll~~~~~~~~~~l~~~~v~~~~aG~rp~~~d~~~~~~~~~~~~~~i~~~-~~gl~~-~~Gg~~t~a~ 377 (563)
.....+.++++..+...-+.+ .+...+++..-.|+.|+..... . .++.++..+ ..|.++ .+|.++..+.
T Consensus 216 -~~~~~~~~~~~~~l~~~~~~~--g~~~~~i~~~~~~~iP~~~~~~---~---~~~rv~liGdAAg~~~P~tG~Gi~~al 286 (388)
T TIGR01790 216 -DRPALPRDRLRQRILARLNAQ--GWQIKTIEEEEWGALPVGLPGP---F---LPQRVAAFGAAAGMVHPTTGYSVARAL 286 (388)
T ss_pred -CCCCCCHHHHHHHHHHHHHHc--CCeeeEEEeeeeEEEecccCCC---c---cCCCeeeeechhcCcCCcccccHHHHH
Confidence 112234444444333222222 2333344555567778742211 1 233455443 456766 5566677667
Q ss_pred HHHHHHHHHHHHc
Q 008503 378 SMAEDAVNAAIKS 390 (563)
Q Consensus 378 ~~Ae~v~~~i~~~ 390 (563)
.-|..+++.+.+.
T Consensus 287 ~~a~~la~~l~~~ 299 (388)
T TIGR01790 287 SDAPGLAAAIAQA 299 (388)
T ss_pred HHHHHHHHHHHHH
Confidence 7777777766554
No 43
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=99.50 E-value=6.5e-13 Score=141.80 Aligned_cols=159 Identities=23% Similarity=0.259 Sum_probs=103.4
Q ss_pred cEEEECCchHHHHHHHHHHHCC-CcEEEEeccCCCCCCccCCCCcccc-chhhH-------------HHHhhcc-CcccH
Q 008503 73 DILVIGGGATGCGVALDAATRG-LRVGLVEREDFSSGTSSRSTKLIHG-GVRYL-------------EKAVFNL-DYGQL 136 (563)
Q Consensus 73 DVvIIGaGiaG~~~A~~la~~G-~~V~llEk~~~~~g~s~~~~~~~~~-g~~~~-------------~~~~~~~-~~~~~ 136 (563)
||||||+|++|+++|+.|+++| .+|+||||.+..+|+|..+.+.+.. +.... ......- ...+.
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg~s~~s~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 80 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGGNSAIAAGGMNAAGTDQQKALGIEDSPELFIKDTLKGGRGINDP 80 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCCcccccCceeecCCCHHHHhcCCCCCHHHHHHHHHHhcCCCCCH
Confidence 8999999999999999999999 9999999998877887776654432 11111 1100000 00011
Q ss_pred HH----------HHHHHHHhhh-cccC--------CcceEEEecCceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEc
Q 008503 137 KL----------VFHALEERKQ-AKDR--------SLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKD 197 (563)
Q Consensus 137 ~~----------~~~~l~~~~~-~~~~--------~~~~~~~~~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~ 197 (563)
.+ ..+++. ... .... .......+.++......+...|.+.+++.|++++++++|++|..+
T Consensus 81 ~l~~~~~~~~~~~i~wl~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~ 159 (439)
T TIGR01813 81 ELVRILAEESADAVDWLQ-DGVGARLDDLIQLGGHSVPRAHRPTGGAGSGAEIVQKLYKKAKKEGIDTRLNSKVEDLIQD 159 (439)
T ss_pred HHHHHHHhccHHHHHHHH-hCCCeeeccccccCCcCCCccccCCCCCCCHHHHHHHHHHHHHHcCCEEEeCCEeeEeEEC
Confidence 11 112222 110 0000 000011112233445678889999999999999999999999986
Q ss_pred CCCCcEEEEEEEECCCCcEEEEEeCeEEEccCcChhh
Q 008503 198 EASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDS 234 (563)
Q Consensus 198 ~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~~s~~ 234 (563)
++ ++|+||++.+ .++....+.+|.||+|+|.|+.+
T Consensus 160 ~~-g~v~Gv~~~~-~~g~~~~~~a~~VVlAtGg~~~n 194 (439)
T TIGR01813 160 DQ-GTVVGVVVKG-KGKGIYIKAAKAVVLATGGFGSN 194 (439)
T ss_pred CC-CcEEEEEEEe-CCCeEEEEecceEEEecCCCCCC
Confidence 54 7899998875 34444467899999999999863
No 44
>PRK07121 hypothetical protein; Validated
Probab=99.50 E-value=5.6e-13 Score=144.15 Aligned_cols=162 Identities=30% Similarity=0.305 Sum_probs=104.9
Q ss_pred CCCccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCcccc--chhhHHHH---------hhcc-----C
Q 008503 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHG--GVRYLEKA---------VFNL-----D 132 (563)
Q Consensus 69 ~~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~--g~~~~~~~---------~~~~-----~ 132 (563)
+.++||||||+|++|+++|++|++.|++|+||||.+..+|+|..+.+++.. +..+.... ...+ .
T Consensus 18 ~~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~gG~s~~sgG~~~~~~g~~~q~~~g~~d~~~~~~~~~~~~~~~ 97 (492)
T PRK07121 18 DDEADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGAGGATALSGGVIYLGGGTAVQKAAGFEDSPENMYAYLRVAVGP 97 (492)
T ss_pred CCccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCcccccCeEEEeCCCcHHHHhcCCCCCHHHHHHHHHHHhCC
Confidence 357999999999999999999999999999999998777777766665431 32221110 0000 0
Q ss_pred cccHH----------HHHHHHHHhhhcccCC----------------cce----------------EEE-ecCcee-chH
Q 008503 133 YGQLK----------LVFHALEERKQAKDRS----------------LKG----------------AVV-YYDGQM-NDS 168 (563)
Q Consensus 133 ~~~~~----------~~~~~l~~~~~~~~~~----------------~~~----------------~~~-~~~~~~-~~~ 168 (563)
..+.. ...+++.+.+...... ..+ ... ...+.. ...
T Consensus 98 ~~d~~l~~~~~~~s~~~i~wl~~~Gv~f~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 177 (492)
T PRK07121 98 GVDEEKLRRYCEGSVEHFDWLEGLGVPFERSFFPEKTSYPPNDEGLYYSGNEKAWPFAEIAKPAPRGHRVQGPGDSGGGA 177 (492)
T ss_pred CCCHHHHHHHHHccHHHHHHHHHcCcEEEeccCCCcccCCCCCcccccchhhcchhhhhccCCcccceecCCCCCCCchH
Confidence 00111 1122333322110000 000 000 000111 345
Q ss_pred HHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEe-CeEEEccCcChh
Q 008503 169 RLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYA-KVVVNAAGPFCD 233 (563)
Q Consensus 169 ~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A-~~VI~AtG~~s~ 233 (563)
.+...|.+.+++.|++++++++|++|..+++ ++|+||++.+ +++...++| +.||+|||.|+.
T Consensus 178 ~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~-g~v~Gv~~~~--~~~~~~i~a~k~VVlAtGg~~~ 240 (492)
T PRK07121 178 MLMDPLAKRAAALGVQIRYDTRATRLIVDDD-GRVVGVEARR--YGETVAIRARKGVVLAAGGFAM 240 (492)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEECCC-CCEEEEEEEe--CCcEEEEEeCCEEEECCCCcCc
Confidence 6788888889999999999999999998754 7899998864 455568999 999999999875
No 45
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=99.49 E-value=1.3e-11 Score=129.66 Aligned_cols=290 Identities=19% Similarity=0.176 Sum_probs=144.7
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhhhccc
Q 008503 72 LDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQAKD 151 (563)
Q Consensus 72 ~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 151 (563)
+||+|||||++|+++|+.|++.|++|+||||...... .+++.+. ...+.+ +.... ..+...+.. .....
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~~---~cg~~i~--~~~l~~----~g~~~-~~~~~~i~~-~~~~~ 69 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNAK---PCGGAIP--LCMVDE----FALPR-DIIDRRVTK-MKMIS 69 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCCC---Ccccccc--HhhHhh----ccCch-hHHHhhhce-eEEec
Confidence 6999999999999999999999999999999842211 1122221 112211 11100 111111110 00011
Q ss_pred CCcceEE-----Ee--cCceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECC----CCcEEEEE
Q 008503 152 RSLKGAV-----VY--YDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNL----SGKEFDTY 220 (563)
Q Consensus 152 ~~~~~~~-----~~--~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~----~g~~~~i~ 220 (563)
+.-.... .. +-+.++...+-..|.+.|.+.|++++.++ ++.+....+.+..++|++.... +|+..+++
T Consensus 70 p~~~~~~~~~~~~~~~~~~~v~R~~~d~~L~~~a~~~G~~v~~~~-~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~ 148 (398)
T TIGR02028 70 PSNIAVDIGRTLKEHEYIGMLRREVLDSFLRRRAADAGATLINGL-VTKLSLPADADDPYTLHYISSDSGGPSGTRCTLE 148 (398)
T ss_pred CCceEEEeccCCCCCCceeeeeHHHHHHHHHHHHHHCCcEEEcce-EEEEEeccCCCceEEEEEeeccccccCCCccEEE
Confidence 1100000 00 11246777888889999999999998875 7777542211345566654311 24445899
Q ss_pred eCeEEEccCcChhhhhhhhcCCCCCeeecCCceEEEecCCcC--CCCcc-cccc-cCCCCcEEEEeecCCcEEeeecCCC
Q 008503 221 AKVVVNAAGPFCDSVRKLADQNVQPMICPSSGVHIVLPDYYS--PEGMG-LIVP-KTKDGRVVFMLPWLGRTVAGTTDSD 296 (563)
Q Consensus 221 A~~VI~AtG~~s~~l~~~~g~~~~~~v~~~~G~~~~~~~~~~--~~~~~-~~~~-~~~~g~~~~~~P~~g~~~iG~t~~~ 296 (563)
|++||.|+|.+|. +++.++........... ..+.++.... ..... +++- ....+.+.|++|..+...||.....
T Consensus 149 a~~VIgADG~~S~-v~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~p~gY~WifP~~~~~~VG~g~~~ 226 (398)
T TIGR02028 149 VDAVIGADGANSR-VAKEIDAGDYSYAIAFQ-ERIRLPDEKMAYYDDLAEMYVGDDVSPDFYGWVFPKCDHVAVGTGTVA 226 (398)
T ss_pred eCEEEECCCcchH-HHHHhCCCCcceEEEEE-EEeeCChhhcccCCCeEEEEeCCCCCCCceEEEEECCCeEEEEEEeCC
Confidence 9999999999884 66666643110000000 1112221110 01111 1111 1123446788998766667763211
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhhccCCCCCCCcccceeeeeecccCCCCCCCCCccccceEee-cCCCeEE-EecChhh
Q 008503 297 TVITLLPEPHEDEIQFILDAISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCE-DFPGLVT-ITGGKWT 374 (563)
Q Consensus 297 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~l~~~~v~~~~aG~rp~~~d~~~~~~~~~~~~~~i~~-~~~gl~~-~~Gg~~t 374 (563)
. .. .++.+.+.....+...+...+++...++.-|+..- .....+.++.. +..|+++ ++|+++-
T Consensus 227 ---~---~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ip~~~~------~~~~~~~~llvGDAAg~v~P~tGeGI~ 291 (398)
T TIGR02028 227 ---A---KP---EIKRLQSGIRARAAGKVAGGRIIRVEAHPIPEHPR------PRRVVGRVALVGDAAGYVTKCSGEGIY 291 (398)
T ss_pred ---C---Cc---cHHHHHHhhhhhhhhccCCCcEEEEEEEecccccc------ccEECCCEEEEEcCCCCCCcccccchH
Confidence 0 11 13334433332221112233445555565554211 01112334444 3467777 6676666
Q ss_pred hhHHHHHHHHHHHHHc
Q 008503 375 TYRSMAEDAVNAAIKS 390 (563)
Q Consensus 375 ~a~~~Ae~v~~~i~~~ 390 (563)
.+...|+.+++.+.+.
T Consensus 292 ~A~~sg~~aa~~i~~~ 307 (398)
T TIGR02028 292 FAAKSGRMCAEAIVEE 307 (398)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555566666655543
No 46
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=99.49 E-value=7e-12 Score=130.70 Aligned_cols=273 Identities=18% Similarity=0.221 Sum_probs=153.7
Q ss_pred cEEEECCchHHHHHHHHH--HHCCCcEEEEeccCCC-CCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhhh-
Q 008503 73 DILVIGGGATGCGVALDA--ATRGLRVGLVEREDFS-SGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQ- 148 (563)
Q Consensus 73 DVvIIGaGiaG~~~A~~l--a~~G~~V~llEk~~~~-~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~- 148 (563)
||+|||||++|+++|+.| ++.|++|+|||+.... ..... .......... . .+.+.....
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~-tW~~~~~~~~------------~----~~~~v~~~w~ 63 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDR-TWCFWEKDLG------------P----LDSLVSHRWS 63 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCc-cccccccccc------------c----hHHHHheecC
Confidence 899999999999999999 8889999999998422 11110 1111111100 0 011111110
Q ss_pred ---cccCCcceEE-EecCceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeE
Q 008503 149 ---AKDRSLKGAV-VYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVV 224 (563)
Q Consensus 149 ---~~~~~~~~~~-~~~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~V 224 (563)
+..+...... .+....++...+-..+.+.+. .+..++.++.|++|..+++ .+.|+. .+|. +++|+.|
T Consensus 64 ~~~v~~~~~~~~~~~~~Y~~i~~~~f~~~l~~~~~-~~~~~~~~~~V~~i~~~~~---~~~v~~---~~g~--~i~a~~V 134 (374)
T PF05834_consen 64 GWRVYFPDGSRILIDYPYCMIDRADFYEFLLERAA-AGGVIRLNARVTSIEETGD---GVLVVL---ADGR--TIRARVV 134 (374)
T ss_pred ceEEEeCCCceEEcccceEEEEHHHHHHHHHHHhh-hCCeEEEccEEEEEEecCc---eEEEEE---CCCC--EEEeeEE
Confidence 0011111111 122346788888888988888 4556677899999987752 222333 3443 8999999
Q ss_pred EEccCcChhhhhhhhcCCCCCeeecCCceEEEecCCcCCCCcccc----cccC-CCCcEEEEeecC-CcEEeeecCCCCC
Q 008503 225 VNAAGPFCDSVRKLADQNVQPMICPSSGVHIVLPDYYSPEGMGLI----VPKT-KDGRVVFMLPWL-GRTVAGTTDSDTV 298 (563)
Q Consensus 225 I~AtG~~s~~l~~~~g~~~~~~v~~~~G~~~~~~~~~~~~~~~~~----~~~~-~~g~~~~~~P~~-g~~~iG~t~~~~~ 298 (563)
|.|+|..+. .... ...+...|..+.++.+........+ +++. ..-.++|++|.. +..+|..|.-.
T Consensus 135 vDa~g~~~~-~~~~------~~~Q~f~G~~v~~~~~~f~~~~~~lMD~r~~~~~~~~~F~Y~lP~~~~~alvE~T~fs-- 205 (374)
T PF05834_consen 135 VDARGPSSP-KARP------LGLQHFYGWEVETDEPVFDPDTATLMDFRVPQSADGPSFLYVLPFSEDRALVEETSFS-- 205 (374)
T ss_pred EECCCcccc-cccc------cccceeEEEEEeccCCCCCCCceEEEEecccCCCCCceEEEEEEcCCCeEEEEEEEEc--
Confidence 999996544 1111 1134456666666665332232222 2212 223689999985 67778766421
Q ss_pred CCCCCCCCHHHHHH-HHHHHhhhccCCCCCCCcccceeeeeecccCCCCCCCCCccccceEeec-CCCeEE-EecChhhh
Q 008503 299 ITLLPEPHEDEIQF-ILDAISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCED-FPGLVT-ITGGKWTT 375 (563)
Q Consensus 299 ~~~~~~~~~~~~~~-ll~~~~~~~~~~l~~~~v~~~~aG~rp~~~d~~~~~~~~~~~~~~i~~~-~~gl~~-~~Gg~~t~ 375 (563)
.....+.++++. |.+.+.. + .+...+|++.-.|+.|++..+. .... ...++..+ ..|++. .+|..+..
T Consensus 206 --~~~~~~~~~~~~~l~~~l~~-~--g~~~~~i~~~E~G~IPm~~~~~---~~~~-~~~v~~iG~agG~v~PsTGYs~~~ 276 (374)
T PF05834_consen 206 --PRPALPEEELKARLRRYLER-L--GIDDYEILEEERGVIPMTTGGF---PPRF-GQRVIRIGTAGGMVKPSTGYSFAR 276 (374)
T ss_pred --CCCCCCHHHHHHHHHHHHHH-c--CCCceeEEEeecceeecccCCC---cccc-CCCeeeEEccccCCCCcccHHHHH
Confidence 122244555543 3344444 3 5666789999999999953322 1111 12344443 356666 34444666
Q ss_pred hHHHHHHHHHHHHH
Q 008503 376 YRSMAEDAVNAAIK 389 (563)
Q Consensus 376 a~~~Ae~v~~~i~~ 389 (563)
+...|..+++.+.+
T Consensus 277 ~~~~a~~ia~~l~~ 290 (374)
T PF05834_consen 277 IQRQADAIADALAK 290 (374)
T ss_pred HHHHHHHHHHHHhh
Confidence 66667777776654
No 47
>PLN02463 lycopene beta cyclase
Probab=99.49 E-value=1.1e-11 Score=131.15 Aligned_cols=283 Identities=18% Similarity=0.191 Sum_probs=147.9
Q ss_pred CCCccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhhh
Q 008503 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQ 148 (563)
Q Consensus 69 ~~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 148 (563)
...|||+|||||++|+++|+.|++.|++|+|||+.+... ..++.++ +.. .+..+.. .+.+.....
T Consensus 26 ~~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~--~p~~~g~------w~~-~l~~lgl------~~~l~~~w~ 90 (447)
T PLN02463 26 SRVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSI--WPNNYGV------WVD-EFEALGL------LDCLDTTWP 90 (447)
T ss_pred ccCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccch--hccccch------HHH-HHHHCCc------HHHHHhhCC
Confidence 456999999999999999999999999999999974211 0111111 110 0111110 111111100
Q ss_pred c----ccCCcceEEEecCceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeE
Q 008503 149 A----KDRSLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVV 224 (563)
Q Consensus 149 ~----~~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~V 224 (563)
. .............+.++...+...+.+.+.+.|++++ .++|+++..+++ . +.|++ .+| .+++|+.|
T Consensus 91 ~~~v~~~~~~~~~~~~~y~~V~R~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~~--~-~~V~~---~dG--~~i~A~lV 161 (447)
T PLN02463 91 GAVVYIDDGKKKDLDRPYGRVNRKKLKSKMLERCIANGVQFH-QAKVKKVVHEES--K-SLVVC---DDG--VKIQASLV 161 (447)
T ss_pred CcEEEEeCCCCccccCcceeEEHHHHHHHHHHHHhhcCCEEE-eeEEEEEEEcCC--e-EEEEE---CCC--CEEEcCEE
Confidence 0 0000000011223457888898999999988999997 468999987653 3 34544 234 37999999
Q ss_pred EEccCcChhhhhhhhcCCCCCeeecCCceEEEecCCcCCCCcccccc----cC---------CC--CcEEEEeecC-CcE
Q 008503 225 VNAAGPFCDSVRKLADQNVQPMICPSSGVHIVLPDYYSPEGMGLIVP----KT---------KD--GRVVFMLPWL-GRT 288 (563)
Q Consensus 225 I~AtG~~s~~l~~~~g~~~~~~v~~~~G~~~~~~~~~~~~~~~~~~~----~~---------~~--g~~~~~~P~~-g~~ 288 (563)
|.|+|..+..+ .... +.....+...|..+.++....+....+++. +. .. ..++|++|.. +..
T Consensus 162 I~AdG~~s~l~-~~~~-~~~~g~Q~a~Gi~~ev~~~p~d~~~~vlMD~r~~~~~~~~~~~~~~~~~p~FlY~~P~~~~~~ 239 (447)
T PLN02463 162 LDATGFSRCLV-QYDK-PFNPGYQVAYGILAEVDSHPFDLDKMLFMDWRDSHLGNNPELRARNSKLPTFLYAMPFSSNRI 239 (447)
T ss_pred EECcCCCcCcc-CCCC-CCCccceeeeeEEeecCCCCcccccchhhhcChhhccccchhhhccCCCCceEEEEecCCCeE
Confidence 99999977532 2111 101112223333333332221111111100 00 00 2478999986 456
Q ss_pred EeeecCCCCCCCCCCCCCHHHHHH-HHHHHhhhccCCCCCCCcccceeeeeecccCCCCCCCCCccccceEeec-CCCeE
Q 008503 289 VAGTTDSDTVITLLPEPHEDEIQF-ILDAISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCED-FPGLV 366 (563)
Q Consensus 289 ~iG~t~~~~~~~~~~~~~~~~~~~-ll~~~~~~~~~~l~~~~v~~~~aG~rp~~~d~~~~~~~~~~~~~~i~~~-~~gl~ 366 (563)
.++.|..-. ....+.++++. +.+.+. .+ ++....+...-.|+.|+... . .. ..+.++..+ ..|++
T Consensus 240 ~vEeT~l~s----~~~~~~~~lk~~L~~~l~-~~--Gi~~~~i~~~E~~~IPmg~~-~----~~-~~~~~~~~G~aag~v 306 (447)
T PLN02463 240 FLEETSLVA----RPGLPMDDIQERMVARLR-HL--GIKVKSVEEDEKCVIPMGGP-L----PV-IPQRVLGIGGTAGMV 306 (447)
T ss_pred EEEeeeeec----CCCCCHHHHHHHHHHHHH-HC--CCCcceeeeeeeeEeeCCCC-C----CC-CCCCEEEecchhcCc
Confidence 677663211 11224444443 333333 22 34445677777788887421 0 01 123455443 45777
Q ss_pred E-EecChhhhhHHHHHHHHHHHHHc
Q 008503 367 T-ITGGKWTTYRSMAEDAVNAAIKS 390 (563)
Q Consensus 367 ~-~~Gg~~t~a~~~Ae~v~~~i~~~ 390 (563)
+ .+|.++..+...|..+++.+.+.
T Consensus 307 ~p~tG~~i~~~~~~~~~~a~~~~~~ 331 (447)
T PLN02463 307 HPSTGYMVARTLAAAPIVADAIVEY 331 (447)
T ss_pred CCCccccHHHHHHHHHHHHHHHHHH
Confidence 6 55655555555555555555544
No 48
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=99.48 E-value=3.5e-12 Score=134.17 Aligned_cols=171 Identities=23% Similarity=0.276 Sum_probs=102.9
Q ss_pred CCCccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCC-CCc---cCCCCccccchhhHHHHhhccCcccHHHHHHHHH
Q 008503 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSS-GTS---SRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALE 144 (563)
Q Consensus 69 ~~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~-g~s---~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~ 144 (563)
...+||+|||||++|+++|+.|+++|++|+|||+.+... ..+ .+...+.+.+.+.+++. . +++.+.
T Consensus 4 ~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~l----G------l~~~~~ 73 (392)
T PRK08773 4 RSRRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRL----G------VWPAVR 73 (392)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHC----C------chhhhh
Confidence 456899999999999999999999999999999986321 111 11112222333333221 1 011111
Q ss_pred Hh-hhc-------ccCCc-ceEEE-------ecCceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEE
Q 008503 145 ER-KQA-------KDRSL-KGAVV-------YYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARI 208 (563)
Q Consensus 145 ~~-~~~-------~~~~~-~~~~~-------~~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~ 208 (563)
+. ... ..... ...+. .....++...+...|.+.+.+.|++++++++|+++..++ +.+ .|.+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~--~~v-~v~~ 150 (392)
T PRK08773 74 AARAQPYRRMRVWDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAALHAAGVQLHCPARVVALEQDA--DRV-RLRL 150 (392)
T ss_pred HhhCCcccEEEEEeCCCCceEEechhccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEecC--CeE-EEEE
Confidence 10 000 00000 00000 011235667888889988988999999999999998765 333 2433
Q ss_pred EECCCCcEEEEEeCeEEEccCcChhhhhhhhcCCCCCeeecCCceEEEec
Q 008503 209 RNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQPMICPSSGVHIVLP 258 (563)
Q Consensus 209 ~d~~~g~~~~i~A~~VI~AtG~~s~~l~~~~g~~~~~~v~~~~G~~~~~~ 258 (563)
.++. ++.|+.||.|+|.+| .+++..+...+..-++..+....++
T Consensus 151 ---~~g~--~~~a~~vV~AdG~~S-~vr~~~g~~~~~~~~~~~~~~~~v~ 194 (392)
T PRK08773 151 ---DDGR--RLEAALAIAADGAAS-TLRELAGLPVSRHDYAQRGVVAFVD 194 (392)
T ss_pred ---CCCC--EEEeCEEEEecCCCc-hHHHhhcCCceEEEeccEEEEEEEE
Confidence 2343 689999999999999 5777777654322234444444333
No 49
>PRK10015 oxidoreductase; Provisional
Probab=99.47 E-value=8.6e-12 Score=132.21 Aligned_cols=158 Identities=21% Similarity=0.222 Sum_probs=93.2
Q ss_pred CCCccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcc-cHHHHHHHHHH-h
Q 008503 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYG-QLKLVFHALEE-R 146 (563)
Q Consensus 69 ~~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~l~~-~ 146 (563)
+.+|||+|||||++|+++|+.|++.|++|+||||....+. ...+.+.+.. ..++.....+... .+. ..... .
T Consensus 3 ~~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~-k~~~gg~i~~--~~~~~l~~~~~~~~~i~---~~~~~~~ 76 (429)
T PRK10015 3 DDKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGC-KNMTGGRLYA--HTLEAIIPGFAASAPVE---RKVTREK 76 (429)
T ss_pred ccccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCc-ccccCceeec--ccHHHHcccccccCCcc---cccccee
Confidence 4579999999999999999999999999999999864322 1111222111 0111111000000 000 00000 0
Q ss_pred hhcccCCcceEEE----------ecCceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcE
Q 008503 147 KQAKDRSLKGAVV----------YYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKE 216 (563)
Q Consensus 147 ~~~~~~~~~~~~~----------~~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~ 216 (563)
.......-...+. .....+....+...|.+.+++.|++++.+++|+.+..++ +++.++.. +.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~--~~v~~v~~-----~~- 148 (429)
T PRK10015 77 ISFLTEESAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREG--NKVTGVQA-----GD- 148 (429)
T ss_pred EEEEeCCCceEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCCEEECCcEEEEEEEeC--CEEEEEEe-----CC-
Confidence 0000000000000 012335666777889999999999999999999998764 56666642 22
Q ss_pred EEEEeCeEEEccCcChhhhhhhhcC
Q 008503 217 FDTYAKVVVNAAGPFCDSVRKLADQ 241 (563)
Q Consensus 217 ~~i~A~~VI~AtG~~s~~l~~~~g~ 241 (563)
.++.|+.||.|+|.++. +.+.++.
T Consensus 149 ~~i~A~~VI~AdG~~s~-v~~~lg~ 172 (429)
T PRK10015 149 DILEANVVILADGVNSM-LGRSLGM 172 (429)
T ss_pred eEEECCEEEEccCcchh-hhcccCC
Confidence 47999999999999774 5554544
No 50
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.47 E-value=2.7e-12 Score=125.66 Aligned_cols=149 Identities=23% Similarity=0.291 Sum_probs=95.7
Q ss_pred CCCCccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhh
Q 008503 68 NSNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERK 147 (563)
Q Consensus 68 ~~~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~ 147 (563)
+..+|||+|||||++|+++|+.|+++|++|+||||+...++..+. .+.+..... .+ . ...+.+.+.+
T Consensus 18 ~~~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~-gg~~~~~~~-~~---------~--~~~~~l~~~g 84 (254)
T TIGR00292 18 DYAESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWG-GGMLFSKIV-VE---------K--PAHEILDEFG 84 (254)
T ss_pred HhcCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccC-CCcceeccc-cc---------c--hHHHHHHHCC
Confidence 456899999999999999999999999999999999643322211 121111100 00 0 0111222211
Q ss_pred hcccCCcceEEEecCceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECC---CC---cEEEEEe
Q 008503 148 QAKDRSLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNL---SG---KEFDTYA 221 (563)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~---~g---~~~~i~A 221 (563)
..... ....+ ...+...+...|.+.+.+.|+++++++.|.++..+++..+|.||.+.... .+ +...++|
T Consensus 85 i~~~~-~~~g~----~~~~~~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~A 159 (254)
T TIGR00292 85 IRYED-EGDGY----VVADSAEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRS 159 (254)
T ss_pred CCeee-ccCce----EEeeHHHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEc
Confidence 11000 00001 12366788889999999999999999999999886531278898774210 11 2468999
Q ss_pred CeEEEccCcChhh
Q 008503 222 KVVVNAAGPFCDS 234 (563)
Q Consensus 222 ~~VI~AtG~~s~~ 234 (563)
+.||.|||..+..
T Consensus 160 k~VVdATG~~a~v 172 (254)
T TIGR00292 160 RVVVDATGHDAEI 172 (254)
T ss_pred CEEEEeecCCchH
Confidence 9999999987753
No 51
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.47 E-value=1.4e-12 Score=142.79 Aligned_cols=164 Identities=19% Similarity=0.173 Sum_probs=102.6
Q ss_pred cCCCCccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCcccc------ch-hhHHHHhh-------ccC
Q 008503 67 NNSNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHG------GV-RYLEKAVF-------NLD 132 (563)
Q Consensus 67 ~~~~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~------g~-~~~~~~~~-------~~~ 132 (563)
|++.++||||||+|++|+++|+.+++.|++|+||||.....+.|..+.|.+.. +. ...+.... .+.
T Consensus 1 ~~~~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~g~s~~a~Ggi~~~~~~~~~~~Ds~e~~~~d~~~~g~~~~ 80 (566)
T PRK06452 1 MEKIEYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRSHSAAAEGGIAAYIPGNSDPNDNPDYMTYDTVKGGDYLV 80 (566)
T ss_pred CCcccCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCCCcchhhccchhhhccccCCCcccHHHHHHHHHHhhccCC
Confidence 34567999999999999999999999999999999997655555444332221 11 11111000 000
Q ss_pred ccc-H-------HHHHHHHHHhhhccc---CC-----cceEEEe----cCceechHHHHHHHHHHHHHCCCEEEcCcEEE
Q 008503 133 YGQ-L-------KLVFHALEERKQAKD---RS-----LKGAVVY----YDGQMNDSRLNVGLALTAALAGAAVLNHAEVI 192 (563)
Q Consensus 133 ~~~-~-------~~~~~~l~~~~~~~~---~~-----~~~~~~~----~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~ 192 (563)
..+ . ....++|.+.+.... +. ..++..+ +.+......+...|.+.+.+.|+++++++.++
T Consensus 81 d~~~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~~~~~ 160 (566)
T PRK06452 81 DQDAAELLSNKSGEIVMLLERWGALFNRQPDGRVAVRYFGGQTYPRTRFVGDKTGMALLHTLFERTSGLNVDFYNEWFSL 160 (566)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCccccCCCCcEeccCCcCccCCeeEecCCCCHHHHHHHHHHHHHhCCCEEEeCcEEE
Confidence 000 1 111233333332211 10 0000000 00001134567788888888899999999999
Q ss_pred EEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccCcCh
Q 008503 193 SLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 232 (563)
Q Consensus 193 ~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~~s 232 (563)
+|..++ |+|+||.+.+..+++...+.|+.||+|||.+.
T Consensus 161 ~Li~~~--g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 198 (566)
T PRK06452 161 DLVTDN--KKVVGIVAMQMKTLTPFFFKTKAVVLATGGMG 198 (566)
T ss_pred EEEEEC--CEEEEEEEEECCCCeEEEEEeCeEEECCCccc
Confidence 999864 79999998875566666899999999999987
No 52
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=99.47 E-value=1.4e-12 Score=138.46 Aligned_cols=159 Identities=27% Similarity=0.270 Sum_probs=98.9
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCcccc-chhh---------HH----HHhhccCc-ccHH
Q 008503 73 DILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHG-GVRY---------LE----KAVFNLDY-GQLK 137 (563)
Q Consensus 73 DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~-g~~~---------~~----~~~~~~~~-~~~~ 137 (563)
||||||+|++|+++|+.|++.|.+|+||||....+|++..+++.+.. +... .+ ........ .+..
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~~gg~~~~s~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 80 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPRLGGSSAFSSGGFDAAGTPPQREAGIEDSPEEFFQDIMAAGGGLNDPD 80 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSGGGSGGGGTCSEEEESSSHSSHHTTTTCHHHHHHHHHHHHTTT-S-HH
T ss_pred CEEEECCCHHHHHHHHHHhhhcCeEEEEEeecccccccccccCceeeecccccccccccccccccceeeecccccccccc
Confidence 89999999999999999999999999999998656666555554431 1111 11 11111110 0111
Q ss_pred ----------HHHHHHHHhhhcccC---C-cceE----E-----Eec-Cc------eechHHHHHHHHHHHHHCCCEEEc
Q 008503 138 ----------LVFHALEERKQAKDR---S-LKGA----V-----VYY-DG------QMNDSRLNVGLALTAALAGAAVLN 187 (563)
Q Consensus 138 ----------~~~~~l~~~~~~~~~---~-~~~~----~-----~~~-~~------~~~~~~l~~~l~~~a~~~G~~i~~ 187 (563)
...+.+.+.+..... . +... . ... .. ......+...|.+.+++.|++|++
T Consensus 81 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~gv~i~~ 160 (417)
T PF00890_consen 81 LVRAFVENSPEAIDWLEELGVPFRRDEDGPFAPTPFGGHSPRWRSPPGNPDPPFGGLGGGKALIEALAKAAEEAGVDIRF 160 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHTT--B-BGTTSSBCEEEETTESSTEEEEESSTTSSSHCCCHHHHHHHHHHHHHHHTTEEEEE
T ss_pred hhhhhhhcccceehhhhhhcccccccccccccccccCCccccceeeeccccccccccccHHHHHHHHHHHHhhcCeeeec
Confidence 112333333221111 0 0000 0 000 01 113356788899999999999999
Q ss_pred CcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccCcChh
Q 008503 188 HAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 233 (563)
Q Consensus 188 ~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~~s~ 233 (563)
++++++|..++ ++|+||.+.+..+++..+|+|+.||+|||.++.
T Consensus 161 ~~~~~~Li~e~--g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 161 NTRVTDLITED--GRVTGVVAENPADGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp SEEEEEEEEET--TEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred cceeeeEEEeC--CceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence 99999999975 799999999766777788999999999999995
No 53
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=99.46 E-value=2.4e-12 Score=138.47 Aligned_cols=161 Identities=26% Similarity=0.254 Sum_probs=99.7
Q ss_pred CCccEEEECCchHHHHHHHHHHHCCCcEEEEeccCC--CCCCccCCCCccccch-------------hhHHHHhhccCc-
Q 008503 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDF--SSGTSSRSTKLIHGGV-------------RYLEKAVFNLDY- 133 (563)
Q Consensus 70 ~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~--~~g~s~~~~~~~~~g~-------------~~~~~~~~~~~~- 133 (563)
.++||||||+|++|+++|+.|++.|++|+||||.+. .+|+|..+.++..... .++.........
T Consensus 3 ~~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~~~~GG~s~~s~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (466)
T PRK08274 3 SMVDVLVIGGGNAALCAALAAREAGASVLLLEAAPREWRGGNSRHTRNLRCMHDAPQDVLVGAYPEEEFWQDLLRVTGGR 82 (466)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCCcccccCCceeeeCCCchhhccccccHHHHHHHHHHhhCCC
Confidence 468999999999999999999999999999999863 5566665555321110 011111000000
Q ss_pred ccHHH----------HHHHHHHhhhcccCCcceEEEecCce--e--chHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCC
Q 008503 134 GQLKL----------VFHALEERKQAKDRSLKGAVVYYDGQ--M--NDSRLNVGLALTAALAGAAVLNHAEVISLIKDEA 199 (563)
Q Consensus 134 ~~~~~----------~~~~l~~~~~~~~~~~~~~~~~~~~~--~--~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~ 199 (563)
.+..+ ..+++.+.+........+...+.... . ....+...|.+.+++.|++++++++|++|..++
T Consensus 83 ~~~~~~~~~~~~s~~~~~wl~~~Gv~~~~~~~~~~~~~~~~~~~~g~g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~~- 161 (466)
T PRK08274 83 TDEALARLLIRESSDCRDWMRKHGVRFQPPLSGALHVARTNAFFWGGGKALVNALYRSAERLGVEIRYDAPVTALELDD- 161 (466)
T ss_pred CCHHHHHHHHHcCHHHHHHHHhCCceEeecCCCccccCCCCeeecCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecC-
Confidence 01111 12223322211000000000000000 0 135677888888999999999999999998864
Q ss_pred CCcEEEEEEEECCCCcEEEEEeCeEEEccCcChh
Q 008503 200 SNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 233 (563)
Q Consensus 200 ~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~~s~ 233 (563)
++|++|.+.+ .+++...++|+.||+|||.|..
T Consensus 162 -g~v~gv~~~~-~~g~~~~i~a~~VIlAtGg~~~ 193 (466)
T PRK08274 162 -GRFVGARAGS-AAGGAERIRAKAVVLAAGGFES 193 (466)
T ss_pred -CeEEEEEEEc-cCCceEEEECCEEEECCCCCCC
Confidence 7899998753 3455567999999999998864
No 54
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.45 E-value=1.5e-12 Score=143.12 Aligned_cols=167 Identities=18% Similarity=0.209 Sum_probs=104.1
Q ss_pred cCCCCccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccchh-----hHHHH----hh---ccCcc
Q 008503 67 NNSNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVR-----YLEKA----VF---NLDYG 134 (563)
Q Consensus 67 ~~~~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~~-----~~~~~----~~---~~~~~ 134 (563)
|++.++||||||+|++|+++|+.|++.|++|+||||.....+.|..+.|-+..... ..+.. .. .+...
T Consensus 8 ~~~~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~~~g~t~~a~Ggi~~~~~~~~~ds~~~~~~dt~~~g~~~~d~ 87 (591)
T PRK07057 8 LPRRKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFPTRSHTVAAQGGIGASLGNMSEDNWHYHFYDTIKGSDWLGDQ 87 (591)
T ss_pred cccccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCCchhccCCcccccccccccChhHhHHHHHHhcCCCCCH
Confidence 45678999999999999999999999999999999987655555444333321110 11100 00 01100
Q ss_pred -cHHH-------HHHHHHHhhhcccCCcceEE--EecCce-----------------echHHHHHHHHHHHHHCCCEEEc
Q 008503 135 -QLKL-------VFHALEERKQAKDRSLKGAV--VYYDGQ-----------------MNDSRLNVGLALTAALAGAAVLN 187 (563)
Q Consensus 135 -~~~~-------~~~~l~~~~~~~~~~~~~~~--~~~~~~-----------------~~~~~l~~~l~~~a~~~G~~i~~ 187 (563)
..+. ..+.+.+.+......-.+.+ .+..+. .....+...|.+.+.+.|++++.
T Consensus 88 ~~v~~~~~~a~~~i~~L~~~Gv~f~~~~~G~~~~~~~gg~s~~~~~~~~~r~~~~~~~tG~~l~~~L~~~~~~~gi~i~~ 167 (591)
T PRK07057 88 DAIEFMCREAPNVVYELEHFGMPFDRNADGTIYQRPFGGHTANYGEKPVQRACAAADRTGHALLHTLYQQNVAAKTQFFV 167 (591)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcceeCCCCcEeeeccCCccccccCCccceeeecCCCChHHHHHHHHHHHHhcCCEEEe
Confidence 0111 12223332221100000000 011111 01245777888888889999999
Q ss_pred CcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccCcChhh
Q 008503 188 HAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDS 234 (563)
Q Consensus 188 ~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~~s~~ 234 (563)
++.+++|..+++ ++|.||.+.+..+++...+.||.||+|||.++..
T Consensus 168 ~~~~~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~ 213 (591)
T PRK07057 168 EWMALDLIRDAD-GDVLGVTALEMETGDVYILEAKTTLFATGGAGRI 213 (591)
T ss_pred CcEEEEEEEcCC-CeEEEEEEEEcCCCeEEEEECCeEEECCCCcccc
Confidence 999999998644 7899998876556766688999999999998753
No 55
>PRK06126 hypothetical protein; Provisional
Probab=99.45 E-value=1.3e-11 Score=135.47 Aligned_cols=162 Identities=18% Similarity=0.225 Sum_probs=101.8
Q ss_pred hcCCCCccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHH
Q 008503 66 ANNSNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEE 145 (563)
Q Consensus 66 ~~~~~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~ 145 (563)
+|.+.++||+|||||++|+++|+.|+++|++|+||||.+.. ....+...+...+++.+++. . +.+.+.+
T Consensus 2 ~~~~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~-~~~~ra~~l~~r~~e~L~~l---------G-l~~~l~~ 70 (545)
T PRK06126 2 MENTSETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGT-AFNPKANTTSARSMEHFRRL---------G-IADEVRS 70 (545)
T ss_pred CCCCccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCC-CCCCccccCCHHHHHHHHhc---------C-hHHHHHh
Confidence 35577899999999999999999999999999999998521 12233333334444444331 0 0111111
Q ss_pred hhhc------------ccCCcceEEE--------------------ec-CceechHHHHHHHHHHHHH-CCCEEEcCcEE
Q 008503 146 RKQA------------KDRSLKGAVV--------------------YY-DGQMNDSRLNVGLALTAAL-AGAAVLNHAEV 191 (563)
Q Consensus 146 ~~~~------------~~~~~~~~~~--------------------~~-~~~~~~~~l~~~l~~~a~~-~G~~i~~~~~v 191 (563)
.+.. ........+. +. ...++...+...|.+.+.+ .|++++++++|
T Consensus 71 ~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v~i~~~~~v 150 (545)
T PRK06126 71 AGLPVDYPTDIAYFTRLTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVTLRYGHRL 150 (545)
T ss_pred hcCCccccCCceEEecCCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCceEEeccEE
Confidence 1100 0000000000 00 0123334566677777765 48999999999
Q ss_pred EEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccCcChhhhhhhhcCC
Q 008503 192 ISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQN 242 (563)
Q Consensus 192 ~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~~s~~l~~~~g~~ 242 (563)
+++..++ +.|+ +.+.+..+++..++++|+||.|+|.+|. +++.+|..
T Consensus 151 ~~i~~~~--~~v~-v~~~~~~~g~~~~i~ad~vVgADG~~S~-VR~~lgi~ 197 (545)
T PRK06126 151 TDFEQDA--DGVT-ATVEDLDGGESLTIRADYLVGCDGARSA-VRRSLGIS 197 (545)
T ss_pred EEEEECC--CeEE-EEEEECCCCcEEEEEEEEEEecCCcchH-HHHhcCCc
Confidence 9998875 3454 5565545666668999999999999995 77777654
No 56
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.45 E-value=2.7e-12 Score=141.38 Aligned_cols=165 Identities=18% Similarity=0.163 Sum_probs=103.9
Q ss_pred CCCccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccch-----hhHHHH----hhccC-cccHHH
Q 008503 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGV-----RYLEKA----VFNLD-YGQLKL 138 (563)
Q Consensus 69 ~~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~-----~~~~~~----~~~~~-~~~~~~ 138 (563)
+.++||||||+|++|+++|+.|++.|++|+||||..+..+.|..+.|.+.... ...+.. +..-. ..+..+
T Consensus 10 ~~~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~~~g~s~~a~Ggi~a~~~~~~~Ds~e~~~~d~~~~g~~~~d~~l 89 (598)
T PRK09078 10 DHKYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFPTRSHTVAAQGGISASLGNMGEDDWRWHMYDTVKGSDWLGDQDA 89 (598)
T ss_pred ccccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCcchhhhcCCcccccCCCCCCCHHHHHHHHHHhccCCCCHHH
Confidence 46799999999999999999999999999999999765555544444332211 111110 00000 001111
Q ss_pred ----------HHHHHHHhhhcc---cCC-c----ceEEEe--c----------CceechHHHHHHHHHHHHHCCCEEEcC
Q 008503 139 ----------VFHALEERKQAK---DRS-L----KGAVVY--Y----------DGQMNDSRLNVGLALTAALAGAAVLNH 188 (563)
Q Consensus 139 ----------~~~~l~~~~~~~---~~~-~----~~~~~~--~----------~~~~~~~~l~~~l~~~a~~~G~~i~~~ 188 (563)
..+.+.+.+... .++ + .++... . ........+...|.+.+.+.|++++++
T Consensus 90 v~~l~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~gg~~~~~~~~~~~~R~~~~~d~tG~~i~~~L~~~~~~~gi~i~~~ 169 (598)
T PRK09078 90 IEYMCREAPAAVYELEHYGVPFSRTEEGKIYQRPFGGMTTNYGKGPPAQRTCAAADRTGHAILHTLYQQSLKHNAEFFIE 169 (598)
T ss_pred HHHHHHHHHHHHHHHHHcCCcceecCCCceeecccCceecccCCCCccceeEecCCCCHHHHHHHHHHHHhhcCCEEEEe
Confidence 122333322211 000 0 011100 0 000012457778888888899999999
Q ss_pred cEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccCcChhh
Q 008503 189 AEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDS 234 (563)
Q Consensus 189 ~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~~s~~ 234 (563)
+.+++|..+++ ++|.||.+.+..+++...|.|+.||+|||.+...
T Consensus 170 ~~v~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~ 214 (598)
T PRK09078 170 YFALDLIMDDG-GVCRGVVAWNLDDGTLHRFRAHMVVLATGGYGRA 214 (598)
T ss_pred EEEEEEEEcCC-CEEEEEEEEECCCCcEEEEEcCEEEECCCCCccc
Confidence 99999998754 6899998876457776789999999999998754
No 57
>PRK08244 hypothetical protein; Provisional
Probab=99.45 E-value=1.2e-11 Score=133.90 Aligned_cols=155 Identities=21% Similarity=0.267 Sum_probs=96.2
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhhhcc
Q 008503 71 PLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQAK 150 (563)
Q Consensus 71 ~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 150 (563)
++||+|||||++|+++|+.|+++|++|+||||.+... ..++..++...+.+.+++. . +.+.+.+.+...
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~-~~~ra~~l~~~~~e~l~~l----G------l~~~l~~~~~~~ 70 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKETV-PYSKALTLHPRTLEILDMR----G------LLERFLEKGRKL 70 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC-CCcceeEecHHHHHHHHhc----C------cHHHHHhhcccc
Confidence 4899999999999999999999999999999985321 1233333333334443321 0 011111111100
Q ss_pred --------c--CCcce--EEEecCceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEE
Q 008503 151 --------D--RSLKG--AVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFD 218 (563)
Q Consensus 151 --------~--~~~~~--~~~~~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~ 218 (563)
. ..+.. .-.+....+....+...|.+.+.+.|++++++++|+++..+++ .+ .|.+.+ .+| ..+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~--~v-~v~~~~-~~g-~~~ 145 (493)
T PRK08244 71 PSGHFAGLDTRLDFSALDTSSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGD--GV-EVVVRG-PDG-LRT 145 (493)
T ss_pred cceEEecccccCCcccCCCCCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCC--eE-EEEEEe-CCc-cEE
Confidence 0 00000 0001112244456677777788888999999999999987753 44 344543 233 257
Q ss_pred EEeCeEEEccCcChhhhhhhhcCC
Q 008503 219 TYAKVVVNAAGPFCDSVRKLADQN 242 (563)
Q Consensus 219 i~A~~VI~AtG~~s~~l~~~~g~~ 242 (563)
++||+||.|+|.+|. +++.+|.+
T Consensus 146 i~a~~vVgADG~~S~-vR~~lgi~ 168 (493)
T PRK08244 146 LTSSYVVGADGAGSI-VRKQAGIA 168 (493)
T ss_pred EEeCEEEECCCCChH-HHHhcCCC
Confidence 999999999999984 67777654
No 58
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.44 E-value=1.5e-12 Score=142.95 Aligned_cols=165 Identities=17% Similarity=0.170 Sum_probs=104.3
Q ss_pred CCCccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccc----h-hhHHHHhhc-------cCccc-
Q 008503 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGG----V-RYLEKAVFN-------LDYGQ- 135 (563)
Q Consensus 69 ~~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g----~-~~~~~~~~~-------~~~~~- 135 (563)
..++||||||+|++|+++|+.|++.|++|+||||.....|.|..+.|.+... . ...+....+ +...+
T Consensus 5 ~~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~~~d~~~ 84 (588)
T PRK08958 5 VREFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIGDQDA 84 (588)
T ss_pred ccccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCCccHHhhhhHhhhcCCCCCCCHHHHHHHHHHHhCCCCCHHH
Confidence 4578999999999999999999999999999999976555554443333211 0 111111110 00000
Q ss_pred H-------HHHHHHHHHhhhcccCCcceEE--EecCce-----------------echHHHHHHHHHHHHHCCCEEEcCc
Q 008503 136 L-------KLVFHALEERKQAKDRSLKGAV--VYYDGQ-----------------MNDSRLNVGLALTAALAGAAVLNHA 189 (563)
Q Consensus 136 ~-------~~~~~~l~~~~~~~~~~~~~~~--~~~~~~-----------------~~~~~l~~~l~~~a~~~G~~i~~~~ 189 (563)
. ....++|.+.+......-.+.+ ....+. -....+...|.+.+.+.|+++++++
T Consensus 85 v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~~~~~r~~~~~~~~G~~i~~~L~~~~~~~gi~i~~~~ 164 (588)
T PRK08958 85 IEYMCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAAADRTGHALLHTLYQQNLKNHTTIFSEW 164 (588)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcccCCCCceeecccccccccccccccceeEecCCCCHHHHHHHHHHHhhhcCCEEEeCc
Confidence 1 1122334333322110000000 001111 0134577788888888999999999
Q ss_pred EEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccCcChhh
Q 008503 190 EVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDS 234 (563)
Q Consensus 190 ~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~~s~~ 234 (563)
.+++|..+++ |+|.||.+.+..+++...|.|+.||+|||.++..
T Consensus 165 ~~~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~ 208 (588)
T PRK08958 165 YALDLVKNQD-GAVVGCTAICIETGEVVYFKARATVLATGGAGRI 208 (588)
T ss_pred EEEEEEECCC-CEEEEEEEEEcCCCcEEEEEcCeEEECCCCcccc
Confidence 9999998644 7999999876567776789999999999998753
No 59
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.44 E-value=1.8e-11 Score=129.92 Aligned_cols=160 Identities=18% Similarity=0.211 Sum_probs=93.8
Q ss_pred CCCccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccchhhHHHHhhccCc-ccHHHHHHHHHHhh
Q 008503 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDY-GQLKLVFHALEERK 147 (563)
Q Consensus 69 ~~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~l~~~~ 147 (563)
...|||+|||||++|+++|+.|++.|++|+||||.+..+... .+.+.+.. ..++....++.. ..+.... ..+..
T Consensus 3 ~~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~-~~gg~l~~--~~~e~l~~~~~~~~~~~~~~--~~~~~ 77 (428)
T PRK10157 3 EDIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKN-VTGGRLYA--HSLEHIIPGFADSAPVERLI--THEKL 77 (428)
T ss_pred cccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcc-cccceech--hhHHHHhhhhhhcCccccee--eeeeE
Confidence 456999999999999999999999999999999986433211 11111110 111111000000 0000000 00000
Q ss_pred hcccCCcceEE----------EecCceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEE
Q 008503 148 QAKDRSLKGAV----------VYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEF 217 (563)
Q Consensus 148 ~~~~~~~~~~~----------~~~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~ 217 (563)
.+....-.-.+ .+....+....+...|.+.+++.|++++.+++|+++..++ +++.++. .++ .
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~--g~v~~v~----~~g--~ 149 (428)
T PRK10157 78 AFMTEKSAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRD--GKVVGVE----ADG--D 149 (428)
T ss_pred EEEcCCCceeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEeC--CEEEEEE----cCC--c
Confidence 00000000000 0112335667788889999999999999999999998764 5665553 233 3
Q ss_pred EEEeCeEEEccCcChhhhhhhhcCC
Q 008503 218 DTYAKVVVNAAGPFCDSVRKLADQN 242 (563)
Q Consensus 218 ~i~A~~VI~AtG~~s~~l~~~~g~~ 242 (563)
++.|+.||+|+|.++ .+.+.+|..
T Consensus 150 ~i~A~~VI~A~G~~s-~l~~~lgl~ 173 (428)
T PRK10157 150 VIEAKTVILADGVNS-ILAEKLGMA 173 (428)
T ss_pred EEECCEEEEEeCCCH-HHHHHcCCC
Confidence 689999999999977 455555543
No 60
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=99.44 E-value=3.2e-12 Score=141.05 Aligned_cols=165 Identities=16% Similarity=0.150 Sum_probs=104.8
Q ss_pred CCCccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccch-----hhHHHHhh-------ccCccc-
Q 008503 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGV-----RYLEKAVF-------NLDYGQ- 135 (563)
Q Consensus 69 ~~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~-----~~~~~~~~-------~~~~~~- 135 (563)
+.++||||||+|++|+++|+++++.|++|+||||....+++|..+.|.+.... ...+.... .+...+
T Consensus 27 ~~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~~~d~~l 106 (617)
T PTZ00139 27 DHTYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPTRSHTVAAQGGINAALGNMTEDDWRWHAYDTVKGSDWLGDQDA 106 (617)
T ss_pred ccccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCCCCCchhhcCCeeEEecCCCCCCHHHHHHHHHHHhCCCCCHHH
Confidence 45789999999999999999999999999999999766665554444332211 11111100 010000
Q ss_pred H-------HHHHHHHHHhhhcccCCcceEEE--ecCce------------------echHHHHHHHHHHHHHCCCEEEcC
Q 008503 136 L-------KLVFHALEERKQAKDRSLKGAVV--YYDGQ------------------MNDSRLNVGLALTAALAGAAVLNH 188 (563)
Q Consensus 136 ~-------~~~~~~l~~~~~~~~~~~~~~~~--~~~~~------------------~~~~~l~~~l~~~a~~~G~~i~~~ 188 (563)
. ....++|.+.+........+.+. ...+. -....+...|.+.+++.|++++++
T Consensus 107 v~~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~s~~~~~~~~~~r~~~~~d~tG~~i~~~L~~~a~~~gv~i~~~ 186 (617)
T PTZ00139 107 IQYMCREAPQAVLELESYGLPFSRTKDGKIYQRAFGGQSLKFGKGGQAYRCAAAADRTGHAMLHTLYGQSLKYDCNFFIE 186 (617)
T ss_pred HHHHHHHHHHHHHHHHhcCCceEeCCCCcEeecccCcccccccCCCccceeeecCCCcHHHHHHHHHHHHHhCCCEEEec
Confidence 1 11123343333221000000000 01111 013467788888898999999999
Q ss_pred cEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccCcChhh
Q 008503 189 AEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDS 234 (563)
Q Consensus 189 ~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~~s~~ 234 (563)
+.+++|..+++ |+|.||.+.+..+++...|.|+.||+|||.+...
T Consensus 187 ~~~~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~ 231 (617)
T PTZ00139 187 YFALDLIMDED-GECRGVIAMSMEDGSIHRFRAHYTVIATGGYGRA 231 (617)
T ss_pred eEEEEEEECCC-CEEEEEEEEECCCCeEEEEECCcEEEeCCCCccc
Confidence 99999988434 7999998876567777789999999999998753
No 61
>PRK06184 hypothetical protein; Provisional
Probab=99.43 E-value=1.2e-11 Score=134.31 Aligned_cols=156 Identities=21% Similarity=0.209 Sum_probs=96.8
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhhhc-
Q 008503 71 PLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQA- 149 (563)
Q Consensus 71 ~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 149 (563)
++||+|||||++|+++|+.|+++|++|+||||.+... ..++..++.+.+.+.+++.. +.+.+.+.+..
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~-~~~ra~~l~~~~~e~l~~lG----------l~~~l~~~~~~~ 71 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPF-PGSRGKGIQPRTQEVFDDLG----------VLDRVVAAGGLY 71 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCC-cCccceeecHHHHHHHHHcC----------cHHHHHhcCccc
Confidence 5899999999999999999999999999999985221 22333444444444443310 01111111110
Q ss_pred ------ccCCcceEE-------------EecCceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEE
Q 008503 150 ------KDRSLKGAV-------------VYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRN 210 (563)
Q Consensus 150 ------~~~~~~~~~-------------~~~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d 210 (563)
......... .+....+....+...|.+.+.+.|++++++++|+++..+++ .|+ +.+.+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~--~v~-v~~~~ 148 (502)
T PRK06184 72 PPMRIYRDDGSVAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRVEFGCELVGFEQDAD--GVT-ARVAG 148 (502)
T ss_pred cceeEEeCCceEEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEcCC--cEE-EEEEe
Confidence 000000000 00011233455667788888888999999999999988753 443 33332
Q ss_pred CCCCcEEEEEeCeEEEccCcChhhhhhhhcCCC
Q 008503 211 NLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNV 243 (563)
Q Consensus 211 ~~~g~~~~i~A~~VI~AtG~~s~~l~~~~g~~~ 243 (563)
.+ ...+++||+||.|+|.+|. +++.++...
T Consensus 149 -~~-~~~~i~a~~vVgADG~~S~-vR~~lgi~~ 178 (502)
T PRK06184 149 -PA-GEETVRARYLVGADGGRSF-VRKALGIGF 178 (502)
T ss_pred -CC-CeEEEEeCEEEECCCCchH-HHHhCCCCc
Confidence 12 2357999999999999995 677777653
No 62
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=99.43 E-value=2.2e-12 Score=133.24 Aligned_cols=157 Identities=23% Similarity=0.321 Sum_probs=96.0
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhhhc-
Q 008503 71 PLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQA- 149 (563)
Q Consensus 71 ~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 149 (563)
+|||+|||||++|+++|+.|+++|++|+||||.+..... ++...+...+++.+.+. . +.+.+.+....
T Consensus 1 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~-~~~~~l~~~~~~~l~~l---------g-l~~~~~~~~~~~ 69 (356)
T PF01494_consen 1 EYDVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPK-GRGIGLSPNSLRILQRL---------G-LLDEILARGSPH 69 (356)
T ss_dssp EEEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCS-SSSEEEEHHHHHHHHHT---------T-EHHHHHHHSEEE
T ss_pred CceEEEECCCHHHHHHHHHHHhcccccccchhccccccc-ccccccccccccccccc---------c-chhhhhhhcccc
Confidence 379999999999999999999999999999998532211 12222223333443321 0 11222222210
Q ss_pred -------ccC---C-c----ceEE-Ee------c-CceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEE
Q 008503 150 -------KDR---S-L----KGAV-VY------Y-DGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGA 206 (563)
Q Consensus 150 -------~~~---~-~----~~~~-~~------~-~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv 206 (563)
... . . .... .+ . ...++...+...|.+.+++.|++++++++|+++..+.+ .++ +
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~--~~~-~ 146 (356)
T PF01494_consen 70 EVMRIFFYDGISDSRIWVENPQIREDMEIDTKGPYGHVIDRPELDRALREEAEERGVDIRFGTRVVSIEQDDD--GVT-V 146 (356)
T ss_dssp CEEEEEEEEETTTSEEEEEEEEEEEECHSTSGSSCEEEEEHHHHHHHHHHHHHHHTEEEEESEEEEEEEEETT--EEE-E
T ss_pred cceeeEeecccCCccceeeecccceeeeccccCCcchhhhHHHHHHhhhhhhhhhhhhheeeeeccccccccc--ccc-c
Confidence 000 0 0 0000 00 0 12245567888899999999999999999999988863 443 3
Q ss_pred EEEECCCCcEEEEEeCeEEEccCcChhhhhhhhcCC
Q 008503 207 RIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQN 242 (563)
Q Consensus 207 ~~~d~~~g~~~~i~A~~VI~AtG~~s~~l~~~~g~~ 242 (563)
.+.+..+|+..+++||+||.|+|.+|. +++.++..
T Consensus 147 ~~~~~~~g~~~~i~adlvVgADG~~S~-vR~~l~~~ 181 (356)
T PF01494_consen 147 VVRDGEDGEEETIEADLVVGADGAHSK-VRKQLGID 181 (356)
T ss_dssp EEEETCTCEEEEEEESEEEE-SGTT-H-HHHHTTGG
T ss_pred ccccccCCceeEEEEeeeecccCcccc-hhhhcccc
Confidence 445545676678999999999999995 55555543
No 63
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.42 E-value=7.3e-12 Score=114.74 Aligned_cols=145 Identities=24% Similarity=0.307 Sum_probs=97.2
Q ss_pred CCCccEEEECCchHHHHHHHHHHHCCCcEEEEeccC-CCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhh
Q 008503 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVERED-FSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERK 147 (563)
Q Consensus 69 ~~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~-~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~ 147 (563)
..+.||+|||||++|+++||+|+++|++|+++||+- +++|..+ .|++.+-+-.. +...+.|.+-+
T Consensus 28 ~~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~--GGmlf~~iVv~------------~~a~~iL~e~g 93 (262)
T COG1635 28 YLESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWG--GGMLFNKIVVR------------EEADEILDEFG 93 (262)
T ss_pred hhhccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccc--cccccceeeec------------chHHHHHHHhC
Confidence 456899999999999999999999999999999984 5544322 22221111000 01112222222
Q ss_pred hcccCCcceEEEecC--ceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEEC---CCC---cEEEE
Q 008503 148 QAKDRSLKGAVVYYD--GQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNN---LSG---KEFDT 219 (563)
Q Consensus 148 ~~~~~~~~~~~~~~~--~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~---~~g---~~~~i 219 (563)
.... ...+ ...|+..++..|+..+.+.|++|++.+.|.++...++ .+|.||.+.=. ..+ +...+
T Consensus 94 I~ye-------~~e~g~~v~ds~e~~skl~~~a~~aGaki~n~~~veDvi~r~~-~rVaGvVvNWt~V~~~~lhvDPl~i 165 (262)
T COG1635 94 IRYE-------EEEDGYYVADSAEFASKLAARALDAGAKIFNGVSVEDVIVRDD-PRVAGVVVNWTPVQMAGLHVDPLTI 165 (262)
T ss_pred Ccce-------ecCCceEEecHHHHHHHHHHHHHhcCceeeecceEEEEEEecC-CceEEEEEecchhhhcccccCccee
Confidence 2100 1112 2357889999999999999999999999999987763 38999876411 001 12478
Q ss_pred EeCeEEEccCcChhhh
Q 008503 220 YAKVVVNAAGPFCDSV 235 (563)
Q Consensus 220 ~A~~VI~AtG~~s~~l 235 (563)
+|++||.|||.-+..+
T Consensus 166 ~a~~VvDaTGHda~v~ 181 (262)
T COG1635 166 RAKAVVDATGHDAEVV 181 (262)
T ss_pred eEEEEEeCCCCchHHH
Confidence 9999999999877544
No 64
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=99.42 E-value=5e-12 Score=139.52 Aligned_cols=165 Identities=14% Similarity=0.119 Sum_probs=104.3
Q ss_pred CCCccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccchh-----hHHHHhh-------ccCccc-
Q 008503 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVR-----YLEKAVF-------NLDYGQ- 135 (563)
Q Consensus 69 ~~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~~-----~~~~~~~-------~~~~~~- 135 (563)
+.++||||||+|++|+++|++|++.|++|+||||..+..++|..+.|.+..... -.+.... .+...+
T Consensus 48 ~~~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~~g~s~~a~Ggi~a~~~~~~~Ds~e~~~~Dt~~~g~~~~d~~l 127 (635)
T PLN00128 48 DHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDA 127 (635)
T ss_pred eeecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCCCCchHHhhcCceeecCCCCCCCHHHHHHHHHHhhCCCCCHHH
Confidence 356899999999999999999999999999999997666655544433321110 0111000 010000
Q ss_pred H-------HHHHHHHHHhhhccc---CC-c----ceEEEe------------cCceechHHHHHHHHHHHHHCCCEEEcC
Q 008503 136 L-------KLVFHALEERKQAKD---RS-L----KGAVVY------------YDGQMNDSRLNVGLALTAALAGAAVLNH 188 (563)
Q Consensus 136 ~-------~~~~~~l~~~~~~~~---~~-~----~~~~~~------------~~~~~~~~~l~~~l~~~a~~~G~~i~~~ 188 (563)
. ....+.+.+.+.... .. + .++... +.+......++..|.+.+.+.|++++.+
T Consensus 128 v~~l~~~s~~~i~~L~~~Gv~F~~~~~g~~~~~~~gg~s~~~~~~g~~~r~~~~~d~tG~~i~~~L~~~a~~~gv~i~~~ 207 (635)
T PLN00128 128 IQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHAMLHTLYGQAMKHNTQFFVE 207 (635)
T ss_pred HHHHHHhHHHHHHHHHhCCCccccCCCCceeeccccccccccCCCcceeeeeccCCCCHHHHHHHHHHHHHhCCCEEEEe
Confidence 1 111233333332211 00 0 011000 0000113457788888888899999999
Q ss_pred cEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccCcChhh
Q 008503 189 AEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDS 234 (563)
Q Consensus 189 ~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~~s~~ 234 (563)
+.+++|..+++ ++|.||.+.+..+|+...|.||.||+|||.+...
T Consensus 208 ~~~~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~~ 252 (635)
T PLN00128 208 YFALDLIMDSD-GACQGVIALNMEDGTLHRFRAHSTILATGGYGRA 252 (635)
T ss_pred eEEEEEEEcCC-CEEEEEEEEEcCCCeEEEEEcCeEEECCCCCccc
Confidence 99999987644 7999998876557777789999999999998754
No 65
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.41 E-value=1.5e-12 Score=144.17 Aligned_cols=165 Identities=19% Similarity=0.226 Sum_probs=97.9
Q ss_pred CCCCccEEEECCchHHHHHHHHHHHCCCcEEEEeccCC-CCCCccCCCCccccchh----------hHHHHhhc---cCc
Q 008503 68 NSNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDF-SSGTSSRSTKLIHGGVR----------YLEKAVFN---LDY 133 (563)
Q Consensus 68 ~~~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~-~~g~s~~~~~~~~~g~~----------~~~~~~~~---~~~ 133 (563)
++.++||||||+|++|+++|+.|++.|++|+||||... ..++|..+.|.+..... ++...+.. +..
T Consensus 32 ~~~~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~~~g~s~~a~GGi~a~~~~~~~~Ds~~~~~~d~~~~g~~~~d 111 (640)
T PRK07573 32 NKRKFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSPRRAHSIAAQGGINAAKNYQNDGDSVYRLFYDTVKGGDFRAR 111 (640)
T ss_pred cccccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhchHhHhhccccCCCHHHHHHHHHHhcCCCCC
Confidence 45679999999999999999999999999999998753 33444333322211100 01100000 000
Q ss_pred c-cH-------HHHHHHHHHhhhcccCCcceEE--EecCce----------echHHHH----HHHHHHHHHCCCEEEcCc
Q 008503 134 G-QL-------KLVFHALEERKQAKDRSLKGAV--VYYDGQ----------MNDSRLN----VGLALTAALAGAAVLNHA 189 (563)
Q Consensus 134 ~-~~-------~~~~~~l~~~~~~~~~~~~~~~--~~~~~~----------~~~~~l~----~~l~~~a~~~G~~i~~~~ 189 (563)
. .. ....+++.+.+........+.+ ....+. .....+. ..|.+.+++.|++|++++
T Consensus 112 ~~lv~~l~~~s~~~i~wL~~~GV~f~~~~~g~~~~~~~gghs~~R~~~~~~~tG~~i~~~l~~~L~~~~~~~gV~i~~~t 191 (640)
T PRK07573 112 EANVYRLAEVSVNIIDQCVAQGVPFAREYGGLLANRSFGGAQVSRTFYARGQTGQQLLLGAYQALSRQIAAGTVKMYTRT 191 (640)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCccccCCCCceeccccCCcccceeEeCCCCCchhHHHHHHHHHHHHHHhcCCEEEece
Confidence 0 00 1122333333322111000000 000000 0111222 445556778899999999
Q ss_pred EEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccCcChhh
Q 008503 190 EVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDS 234 (563)
Q Consensus 190 ~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~~s~~ 234 (563)
.|++|..++ ++|.||.+.+..++....|.||.||+|||.|+..
T Consensus 192 ~v~~Li~d~--g~V~GV~~~~~~~g~~~~i~AkaVVLATGG~g~~ 234 (640)
T PRK07573 192 EMLDLVVVD--GRARGIVARNLVTGEIERHTADAVVLATGGYGNV 234 (640)
T ss_pred EEEEEEEeC--CEEEEEEEEECCCCcEEEEECCEEEECCCCcccC
Confidence 999998764 7999999886446666689999999999998863
No 66
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.40 E-value=5.5e-12 Score=116.50 Aligned_cols=143 Identities=28% Similarity=0.383 Sum_probs=87.6
Q ss_pred CCCccEEEECCchHHHHHHHHHHHCCCcEEEEeccC-CCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhh
Q 008503 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVERED-FSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERK 147 (563)
Q Consensus 69 ~~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~-~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~ 147 (563)
..++||+|||||++|+++|+.|++.|+||+++|++. +++|.. .+|.-+ .+...+ .....+ +.+-+
T Consensus 15 ~~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~-------~Gg~lf-~~iVVq---~~a~~i---L~elg 80 (230)
T PF01946_consen 15 YLEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMW-------GGGMLF-NKIVVQ---EEADEI---LDELG 80 (230)
T ss_dssp HTEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTT-------S-CTT----EEEE---TTTHHH---HHHHT
T ss_pred hccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCcccc-------cccccc-chhhhh---hhHHHH---HHhCC
Confidence 567999999999999999999999999999999985 433322 122111 110000 001111 11111
Q ss_pred hcccCCcceEEEecC--ceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEEC---CCC---cEEEE
Q 008503 148 QAKDRSLKGAVVYYD--GQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNN---LSG---KEFDT 219 (563)
Q Consensus 148 ~~~~~~~~~~~~~~~--~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~---~~g---~~~~i 219 (563)
... . .+.+ ...|+.+++..|+..+.+.|+++++.+.|.++...++ ++|.||.+.-. ..+ +...|
T Consensus 81 i~y-~------~~~~g~~v~d~~~~~s~L~s~a~~aGakifn~~~vEDvi~r~~-~rV~GvViNWt~V~~~glHvDPl~i 152 (230)
T PF01946_consen 81 IPY-E------EYGDGYYVADSVEFTSTLASKAIDAGAKIFNLTSVEDVIVRED-DRVAGVVINWTPVEMAGLHVDPLTI 152 (230)
T ss_dssp ----E------E-SSEEEES-HHHHHHHHHHHHHTTTEEEEETEEEEEEEEECS-CEEEEEEEEEHHHHTT--T-B-EEE
T ss_pred cee-E------EeCCeEEEEcHHHHHHHHHHHHhcCCCEEEeeeeeeeeEEEcC-CeEEEEEEEehHHhHhhcCCCcceE
Confidence 110 0 1112 2357889999999999999999999999999987664 69999987531 111 23589
Q ss_pred EeCeEEEccCcChh
Q 008503 220 YAKVVVNAAGPFCD 233 (563)
Q Consensus 220 ~A~~VI~AtG~~s~ 233 (563)
+||+||.|||.-+.
T Consensus 153 ~ak~ViDaTGHda~ 166 (230)
T PF01946_consen 153 RAKVVIDATGHDAE 166 (230)
T ss_dssp EESEEEE---SSSS
T ss_pred EEeEEEeCCCCchH
Confidence 99999999998664
No 67
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=99.40 E-value=1.8e-11 Score=128.78 Aligned_cols=156 Identities=20% Similarity=0.302 Sum_probs=94.8
Q ss_pred CCCCccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCC---CC--ccCCCCccccchhhHHHHhhccCcccHHHHHHH
Q 008503 68 NSNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSS---GT--SSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHA 142 (563)
Q Consensus 68 ~~~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~---g~--s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 142 (563)
...+|||+|||||++|+++|+.|++.|++|+|||+.+... +. ..+...+.+.+.+.+++. .. ++.
T Consensus 2 ~~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~l----Gl------~~~ 71 (391)
T PRK08020 2 TNQPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGL----GV------WDA 71 (391)
T ss_pred CcccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHc----CC------hhh
Confidence 4567999999999999999999999999999999985211 10 011122222333333321 10 111
Q ss_pred HHHh-hh---------cccCCcc--e-EE--EecCceechHHHHHHHHHHHHHC-CCEEEcCcEEEEEEEcCCCCcEEEE
Q 008503 143 LEER-KQ---------AKDRSLK--G-AV--VYYDGQMNDSRLNVGLALTAALA-GAAVLNHAEVISLIKDEASNRIIGA 206 (563)
Q Consensus 143 l~~~-~~---------~~~~~~~--~-~~--~~~~~~~~~~~l~~~l~~~a~~~-G~~i~~~~~v~~l~~~~~~g~v~gv 206 (563)
+.+. .. ....... . .. ......++...+...|.+.+.+. |++++++++|+++..+++ . +.|
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~--~-~~v 148 (391)
T PRK08020 72 VQAMRSHPYRRLETWEWETAHVVFDAAELKLPELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRDDD--G-WEL 148 (391)
T ss_pred hhhhhCcccceEEEEeCCCCeEEecccccCCCccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCC--e-EEE
Confidence 1100 00 0000000 0 00 00112356677888888887776 999999999999987653 2 234
Q ss_pred EEEECCCCcEEEEEeCeEEEccCcChhhhhhhhcCC
Q 008503 207 RIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQN 242 (563)
Q Consensus 207 ~~~d~~~g~~~~i~A~~VI~AtG~~s~~l~~~~g~~ 242 (563)
.+ .++ .+++|+.||.|+|.+|. +++..+..
T Consensus 149 ~~---~~g--~~~~a~~vI~AdG~~S~-vR~~~~~~ 178 (391)
T PRK08020 149 TL---ADG--EEIQAKLVIGADGANSQ-VRQMAGIG 178 (391)
T ss_pred EE---CCC--CEEEeCEEEEeCCCCch-hHHHcCCC
Confidence 33 234 36899999999999995 77776654
No 68
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.39 E-value=8.9e-12 Score=137.87 Aligned_cols=165 Identities=25% Similarity=0.274 Sum_probs=101.5
Q ss_pred CCCCccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccch------hhHHHHh-------hccCcc
Q 008503 68 NSNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGV------RYLEKAV-------FNLDYG 134 (563)
Q Consensus 68 ~~~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~------~~~~~~~-------~~~~~~ 134 (563)
++.++||||||+|++|+++|+.|++.|++|+||||.....++|..+.|.+.... .-.+... ..+...
T Consensus 5 ~~~~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~g~s~~a~Ggi~a~~~~~~~~ds~~~~~~D~~~~g~~l~d~ 84 (626)
T PRK07803 5 ERHSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGKAHTVMAEGGCAAAMGNVNPKDNWQVHFRDTMRGGKFLNNW 84 (626)
T ss_pred cceeecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCCCcceecCccceeeccCCCCCCCHHHHHHHHHHHhccCCcH
Confidence 356799999999999999999999999999999999776665555544332211 0011110 001000
Q ss_pred c-HHH-------HHHHHHHhhhcccCCcceEE--EecCce----------echHHHHHHHHHHHHHC--------C----
Q 008503 135 Q-LKL-------VFHALEERKQAKDRSLKGAV--VYYDGQ----------MNDSRLNVGLALTAALA--------G---- 182 (563)
Q Consensus 135 ~-~~~-------~~~~l~~~~~~~~~~~~~~~--~~~~~~----------~~~~~l~~~l~~~a~~~--------G---- 182 (563)
+ .+. ..+.+.+.+......-.+.+ ....+. .....++..|.+.+.+. |
T Consensus 85 ~~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~tG~~i~~~L~~~~~~~~~~~~~~~G~~~~ 164 (626)
T PRK07803 85 RMAELHAKEAPDRVWELETYGALFDRTKDGRISQRNFGGHTYPRLAHVGDRTGLELIRTLQQKIVSLQQEDHAELGDYEA 164 (626)
T ss_pred HHHHHHHHHhHHHHHHHHHCCCceEecCCCceeeeecCCcccCeEEecCCCcHHHHHHHHHHHHHhhhccccccccCCcC
Confidence 0 011 11233333222100000000 011111 11245667777777665 7
Q ss_pred -CEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccCcChhh
Q 008503 183 -AAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDS 234 (563)
Q Consensus 183 -~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~~s~~ 234 (563)
+++++++.|++|..++ ++|.||.+.+..+++...|.|+.||+|||.+...
T Consensus 165 ~v~i~~~~~v~~L~~~~--g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~~~ 215 (626)
T PRK07803 165 RIKVFAECTITELLKDG--GRIAGAFGYWRESGRFVLFEAPAVVLATGGIGKS 215 (626)
T ss_pred ceEEEeCCEEEEEEEEC--CEEEEEEEEECCCCeEEEEEcCeEEECCCcccCC
Confidence 9999999999998764 7899998766456666689999999999987654
No 69
>PLN02815 L-aspartate oxidase
Probab=99.39 E-value=7.9e-12 Score=136.78 Aligned_cols=164 Identities=18% Similarity=0.242 Sum_probs=101.9
Q ss_pred CCCccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccch-------hhHHHHhhc---cCccc-HH
Q 008503 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGV-------RYLEKAVFN---LDYGQ-LK 137 (563)
Q Consensus 69 ~~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~-------~~~~~~~~~---~~~~~-~~ 137 (563)
+.++||||||+|++|+++|+.+++.| +|+||||....+|+|..+.|.+.... .++...+.. +...+ .+
T Consensus 27 ~~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg~s~~a~Ggi~a~~~~~Ds~e~~~~d~~~~g~~~~d~~lv~ 105 (594)
T PLN02815 27 TKYFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHESNTNYAQGGVSAVLDPSDSVESHMRDTIVAGAFLCDEETVR 105 (594)
T ss_pred ccccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCCcHHHhhcccccCCCCCCCHHHHHHHHHHhccCCCcHHHHH
Confidence 56799999999999999999999999 99999999877776655544332211 111111110 01000 11
Q ss_pred -------HHHHHHHHhhhccc---CC-c----ceEEEe----cCceechHHHHHHHHHHHHHC-CCEEEcCcEEEEEEEc
Q 008503 138 -------LVFHALEERKQAKD---RS-L----KGAVVY----YDGQMNDSRLNVGLALTAALA-GAAVLNHAEVISLIKD 197 (563)
Q Consensus 138 -------~~~~~l~~~~~~~~---~~-~----~~~~~~----~~~~~~~~~l~~~l~~~a~~~-G~~i~~~~~v~~l~~~ 197 (563)
...++|.+.+.... .. + .++... +.+......+...|.+.+.+. |+++++++.+++|..+
T Consensus 106 ~~~~~s~e~i~~L~~~Gv~F~~~~~g~~~~~~~gg~s~~R~~~~~d~tG~~i~~~L~~~~~~~~~i~i~~~~~~~~Li~~ 185 (594)
T PLN02815 106 VVCTEGPERVKELIAMGASFDHGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVKNDPNITFFEHHFAIDLLTS 185 (594)
T ss_pred HHHHHHHHHHHHHHHhCCeeeecCCCCccccCCCCCccCceeecCCCCHHHHHHHHHHHHHhcCCCEEEeceEhheeeee
Confidence 11233333332210 00 0 011000 001112345777888877665 8999999999999986
Q ss_pred CCCC--cEEEEEEEECCCCcEEEEEeCeEEEccCcChh
Q 008503 198 EASN--RIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 233 (563)
Q Consensus 198 ~~~g--~v~gv~~~d~~~g~~~~i~A~~VI~AtG~~s~ 233 (563)
++++ +|.||.+.+..++....|.||.||+|||.+..
T Consensus 186 ~~g~~~~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~ 223 (594)
T PLN02815 186 QDGGSIVCHGADVLDTRTGEVVRFISKVTLLASGGAGH 223 (594)
T ss_pred cCCCccEEEEEEEEEcCCCeEEEEEeceEEEcCCccee
Confidence 4423 38999887655676678899999999999875
No 70
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=99.39 E-value=3e-12 Score=141.96 Aligned_cols=166 Identities=23% Similarity=0.241 Sum_probs=101.7
Q ss_pred cCCCCccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCcc-cc-c-----h----h-hHHHHhhc----
Q 008503 67 NNSNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLI-HG-G-----V----R-YLEKAVFN---- 130 (563)
Q Consensus 67 ~~~~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~-~~-g-----~----~-~~~~~~~~---- 130 (563)
|.+.++||||||||++|+++|++|++.|++|+||||.+...+.|..+.|-+ .. + . . .+...+..
T Consensus 1 ~~~~~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~~~s~s~~a~GGi~a~~g~~~~g~~Ds~e~~~~Dt~k~~~~~ 80 (657)
T PRK08626 1 MKIIYTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAKRSHSAAAQGGMQASLGNAVKGEGDNEDVHFADTVKGSDWG 80 (657)
T ss_pred CCceeccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCCCCcchHHHhhhHHhhccccccCCCCCHHHHHHHHHHhcCCC
Confidence 346789999999999999999999999999999999976555443332211 11 0 0 0 00111100
Q ss_pred cCcccHH-------HHHHHHHHhhhcccCCcce---------------------EE--EecCcee----------chHHH
Q 008503 131 LDYGQLK-------LVFHALEERKQAKDRSLKG---------------------AV--VYYDGQM----------NDSRL 170 (563)
Q Consensus 131 ~~~~~~~-------~~~~~l~~~~~~~~~~~~~---------------------~~--~~~~~~~----------~~~~l 170 (563)
.+....+ ...+.+.+.+........+ -+ .++.|.. ....+
T Consensus 81 ~D~~~vr~~v~~sp~~i~~L~~~Gv~f~r~~~g~~~~~~~g~~~~~~~~~~~~~~i~~r~~GG~~~~R~~~~~d~tG~~l 160 (657)
T PRK08626 81 CDQEVARMFVHTAPKAVRELAAWGVPWTRVTAGPRTVVINGEKVTITEKEEAHGLINARDFGGTKKWRTCYTADGTGHTM 160 (657)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCCeecCCCcccccccccccccccccccccccccccccccccceeEecCCCcHHHH
Confidence 0000001 1122333222210000000 00 0011110 12345
Q ss_pred HHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccCcChhh
Q 008503 171 NVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDS 234 (563)
Q Consensus 171 ~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~~s~~ 234 (563)
...|.+.+.+.|+++++++.|++|..++ ++|.||.+.+..+|+...+.|+.||+|||.|+..
T Consensus 161 ~~~L~~~~~~~gv~i~~~~~~~~Li~~~--g~v~Gv~~~~~~~G~~~~i~AkaVVLATGG~g~~ 222 (657)
T PRK08626 161 LYAVDNEAIKLGVPVHDRKEAIALIHDG--KRCYGAVVRCLITGELRAYVAKATLIATGGYGRI 222 (657)
T ss_pred HHHHHHHHHhCCCEEEeeEEEEEEEEEC--CEEEEEEEEEcCCCcEEEEEcCeEEECCCcccCC
Confidence 5677888888999999999999999864 7999999987567776789999999999998754
No 71
>PRK11445 putative oxidoreductase; Provisional
Probab=99.38 E-value=2.8e-10 Score=117.81 Aligned_cols=294 Identities=13% Similarity=0.085 Sum_probs=141.0
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCC--CCCccCCCCcc-ccchhhHHHHhhccCcccHHHHHHHHHHhhh
Q 008503 72 LDILVIGGGATGCGVALDAATRGLRVGLVEREDFS--SGTSSRSTKLI-HGGVRYLEKAVFNLDYGQLKLVFHALEERKQ 148 (563)
Q Consensus 72 ~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~--~g~s~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 148 (563)
|||+|||||++|+++|+.|++. ++|+|||+.+.. .+.....++.+ +.+.+.+++............ ........
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~--~~~~~~~~ 78 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIAN--PQIFAVKT 78 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeec--cccceeeE
Confidence 7999999999999999999999 999999998532 12111122223 233344433211000000000 00000000
Q ss_pred c-ccCCcceEEEecCceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEc
Q 008503 149 A-KDRSLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNA 227 (563)
Q Consensus 149 ~-~~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~A 227 (563)
. ........+......++...+...|.+ +.+.|+++++++.|+++..+++ . +.|.+. .++...+++|++||.|
T Consensus 79 ~~~~~~~~~~~~~~~~~i~R~~~~~~L~~-~~~~gv~v~~~~~v~~i~~~~~--~-~~v~~~--~~g~~~~i~a~~vV~A 152 (351)
T PRK11445 79 IDLANSLTRNYQRSYINIDRHKFDLWLKS-LIPASVEVYHNSLCRKIWREDD--G-YHVIFR--ADGWEQHITARYLVGA 152 (351)
T ss_pred ecccccchhhcCCCcccccHHHHHHHHHH-HHhcCCEEEcCCEEEEEEEcCC--E-EEEEEe--cCCcEEEEEeCEEEEC
Confidence 0 000000000001124677777776666 4567899999999999987653 2 234432 2454457999999999
Q ss_pred cCcChhhhhhhhcCCCCCeeecCCceEEEecCCcCCCCcccccccCCCCcEEEEeecCCcEEeeecCCCCCCCCCCCCCH
Q 008503 228 AGPFCDSVRKLADQNVQPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWLGRTVAGTTDSDTVITLLPEPHE 307 (563)
Q Consensus 228 tG~~s~~l~~~~g~~~~~~v~~~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~P~~g~~~iG~t~~~~~~~~~~~~~~ 307 (563)
+|..|. +++.++........ .+....+...........++.......+.|.+|.++...+|..... ....
T Consensus 153 dG~~S~-vr~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~f~~~~~~~~~W~~p~~~~~~~g~~~~~-------~~~~ 222 (351)
T PRK11445 153 DGANSM-VRRHLYPDHQIRKY--VAIQQWFAEKHPVPFYSCIFDNEITDCYSWSISKDGYFIFGGAYPM-------KDGR 222 (351)
T ss_pred CCCCcH-HhHHhcCCCchhhE--EEEEEEecCCCCCCCcceEEeccCCCceEEEeCCCCcEEecccccc-------cchH
Confidence 999885 55554433111001 1111122221110111122211122346777888766666643210 1112
Q ss_pred HHHHHHHHHHhhhccCCCCCCCcccceeeeeecccCCCCCCCCCccccceEee-cCCCeEE-EecChhhhhHHHHHHHHH
Q 008503 308 DEIQFILDAISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCE-DFPGLVT-ITGGKWTTYRSMAEDAVN 385 (563)
Q Consensus 308 ~~~~~ll~~~~~~~~~~l~~~~v~~~~aG~rp~~~d~~~~~~~~~~~~~~i~~-~~~gl~~-~~Gg~~t~a~~~Ae~v~~ 385 (563)
+.++.+.+...++. ..+ .+++..-.+.- +.+... ... ...++.++.. +..|++. .+|+++..+..-|+.+++
T Consensus 223 ~~~~~l~~~l~~~~-~~~--~~~~~~~~~~~-~~~~~~-~~~-~~~~~~vvlVGDAAg~i~P~tG~Gi~~al~sa~~la~ 296 (351)
T PRK11445 223 ERFETLKEKLSAFG-FQF--GKPVKTEACTV-LRPSRW-QDF-VCGKDNAFLIGEAAGFISPSSLEGISYALDSARILSE 296 (351)
T ss_pred HHHHHHHHHHHhcc-ccc--ccccccccccc-cCcccc-ccc-ccCCCCEEEEEcccCccCCccCccHHHHHHhHHHHHH
Confidence 23344444333321 111 11222222221 111100 000 0012234443 3456776 556678777888888888
Q ss_pred HHHHc
Q 008503 386 AAIKS 390 (563)
Q Consensus 386 ~i~~~ 390 (563)
.+.+.
T Consensus 297 ~l~~~ 301 (351)
T PRK11445 297 VLNKQ 301 (351)
T ss_pred HHHhc
Confidence 77654
No 72
>PRK07804 L-aspartate oxidase; Provisional
Probab=99.38 E-value=1.3e-11 Score=134.63 Aligned_cols=164 Identities=18% Similarity=0.194 Sum_probs=101.8
Q ss_pred CCCccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccc--h-----hhHHHHhhccC-cccHH---
Q 008503 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGG--V-----RYLEKAVFNLD-YGQLK--- 137 (563)
Q Consensus 69 ~~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g--~-----~~~~~~~~~~~-~~~~~--- 137 (563)
+.++||||||+|++|+++|+.|++.|.+|+||||....+|+|..+.|.+... . .++......-. ..+..
T Consensus 14 ~~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~g~~d~~~v~ 93 (541)
T PRK07804 14 RDAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGSTRWAQGGIAAVLDPGDSPEAHVADTLVAGAGLCDPDAVR 93 (541)
T ss_pred ccccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCCchhhhccceeeccCCCCCHHHHHHHHHHhcCCCCCHHHHH
Confidence 4568999999999999999999999999999999987666665544433211 1 01111111000 00111
Q ss_pred -------HHHHHHHHhhhcccCCcceEE--EecC-----------ceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEc
Q 008503 138 -------LVFHALEERKQAKDRSLKGAV--VYYD-----------GQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKD 197 (563)
Q Consensus 138 -------~~~~~l~~~~~~~~~~~~~~~--~~~~-----------~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~ 197 (563)
...+++.+.+........+.+ .... +......+...|.+.+++.|+++++++.|++|..+
T Consensus 94 ~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~~g~~~~r~~~~~~d~~G~~i~~~L~~~~~~~gV~i~~~~~v~~Li~~ 173 (541)
T PRK07804 94 SLVAEGPRAVRELVALGARFDESPDGRWALTREGGHSRRRIVHAGGDATGAEVQRALDAAVRADPLDIREHALALDLLTD 173 (541)
T ss_pred HHHHHHHHHHHHHHHcCCccccCCCCcEeeeccCCeecCeeEecCCCCCHHHHHHHHHHHHHhCCCEEEECeEeeeeEEc
Confidence 112333333322111000000 0001 11123567778888888899999999999999887
Q ss_pred CCCCcEEEEEEEEC---CCCcEEEEEeCeEEEccCcChh
Q 008503 198 EASNRIIGARIRNN---LSGKEFDTYAKVVVNAAGPFCD 233 (563)
Q Consensus 198 ~~~g~v~gv~~~d~---~~g~~~~i~A~~VI~AtG~~s~ 233 (563)
++ ++|.||.+.+. ..+....+.|+.||+|||.++.
T Consensus 174 ~~-g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~~~ 211 (541)
T PRK07804 174 GT-GAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGLGQ 211 (541)
T ss_pred CC-CeEEEEEEEeccCCCCCcEEEEEcCeEEECCCCCCC
Confidence 54 68999988642 1222357899999999999875
No 73
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.38 E-value=1.2e-11 Score=130.52 Aligned_cols=153 Identities=19% Similarity=0.267 Sum_probs=98.0
Q ss_pred CccEEEECCchHHHHHHHHHHHCC--CcEEEEeccCCCCC-CccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhh
Q 008503 71 PLDILVIGGGATGCGVALDAATRG--LRVGLVEREDFSSG-TSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERK 147 (563)
Q Consensus 71 ~~DVvIIGaGiaG~~~A~~la~~G--~~V~llEk~~~~~g-~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~ 147 (563)
.|||+|||||++|+++|+.|+++| ++|+|+|+.+.... ..++..++.+.+.+.+++.. +++.+.+..
T Consensus 1 ~~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lG----------l~~~~~~~~ 70 (403)
T PRK07333 1 QCDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALG----------VWDEIAPEA 70 (403)
T ss_pred CCCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCC----------Chhhhhhhc
Confidence 389999999999999999999995 99999999853211 11333444444445444320 011111111
Q ss_pred hc-------ccC---Ccc---eEE-------EecCceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEE
Q 008503 148 QA-------KDR---SLK---GAV-------VYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGAR 207 (563)
Q Consensus 148 ~~-------~~~---~~~---~~~-------~~~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~ 207 (563)
.. ... ... ..+ .+....++...+...|.+.+.+.|++++++++|+++..++ +.+ .|.
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~--~~v-~v~ 147 (403)
T PRK07333 71 QPITDMVITDSRTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGIDLREATSVTDFETRD--EGV-TVT 147 (403)
T ss_pred CcccEEEEEeCCCCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcC--CEE-EEE
Confidence 00 000 000 000 0111246778889999999999999999999999998765 333 243
Q ss_pred EEECCCCcEEEEEeCeEEEccCcChhhhhhhhcCC
Q 008503 208 IRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQN 242 (563)
Q Consensus 208 ~~d~~~g~~~~i~A~~VI~AtG~~s~~l~~~~g~~ 242 (563)
+ .++ ..+.||.||.|+|.+|. +++..+..
T Consensus 148 ~---~~g--~~~~ad~vI~AdG~~S~-vr~~~g~~ 176 (403)
T PRK07333 148 L---SDG--SVLEARLLVAADGARSK-LRELAGIK 176 (403)
T ss_pred E---CCC--CEEEeCEEEEcCCCChH-HHHHcCCC
Confidence 3 234 36899999999999986 67776655
No 74
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=99.38 E-value=1.5e-11 Score=129.06 Aligned_cols=153 Identities=23% Similarity=0.262 Sum_probs=94.7
Q ss_pred CCccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCC--C--ccCCCCccccchhhHHHHhhccCcccHHHHHHHHHH
Q 008503 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSG--T--SSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEE 145 (563)
Q Consensus 70 ~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g--~--s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~ 145 (563)
..+||+|||||++|+++|+.|++.|++|+|+||++.... . ..+...+...+.+.+++. . +.+.+..
T Consensus 4 ~~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~----g------~~~~~~~ 73 (388)
T PRK07608 4 MKFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERL----G------VWQALDA 73 (388)
T ss_pred ccCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHc----C------chhhhhh
Confidence 358999999999999999999999999999999853211 1 111122222333333321 0 0111110
Q ss_pred hhh-----c--ccCCcceEEE---------ecCceechHHHHHHHHHHHHHCC-CEEEcCcEEEEEEEcCCCCcEEEEEE
Q 008503 146 RKQ-----A--KDRSLKGAVV---------YYDGQMNDSRLNVGLALTAALAG-AAVLNHAEVISLIKDEASNRIIGARI 208 (563)
Q Consensus 146 ~~~-----~--~~~~~~~~~~---------~~~~~~~~~~l~~~l~~~a~~~G-~~i~~~~~v~~l~~~~~~g~v~gv~~ 208 (563)
... . .... ...+. .....+++..+...|.+.+.+.| ++++ +++|+++..+++ .+ .|.+
T Consensus 74 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~--~~-~v~~ 148 (388)
T PRK07608 74 ARLAPVYDMRVFGDA-HARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTWF-PARAQGLEVDPD--AA-TLTL 148 (388)
T ss_pred hcCCcceEEEEEECC-CceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEecCC--eE-EEEE
Confidence 000 0 0000 00010 11234667888899999998887 9998 889999987653 33 3433
Q ss_pred EECCCCcEEEEEeCeEEEccCcChhhhhhhhcCCC
Q 008503 209 RNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNV 243 (563)
Q Consensus 209 ~d~~~g~~~~i~A~~VI~AtG~~s~~l~~~~g~~~ 243 (563)
.++ .+++|+.||.|+|.+|. +++..+...
T Consensus 149 ---~~g--~~~~a~~vI~adG~~S~-vr~~~~~~~ 177 (388)
T PRK07608 149 ---ADG--QVLRADLVVGADGAHSW-VRSQAGIKA 177 (388)
T ss_pred ---CCC--CEEEeeEEEEeCCCCch-HHHhcCCCc
Confidence 233 36999999999999986 777777653
No 75
>PRK06834 hypothetical protein; Provisional
Probab=99.38 E-value=5.4e-11 Score=128.10 Aligned_cols=156 Identities=21% Similarity=0.253 Sum_probs=96.0
Q ss_pred CCccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhhhc
Q 008503 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQA 149 (563)
Q Consensus 70 ~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 149 (563)
.++||+|||||++|+++|+.|+++|++|+||||.+.......+..++.....+.+++. . +.+.+.+....
T Consensus 2 ~~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~l---------G-l~~~l~~~~~~ 71 (488)
T PRK06834 2 TEHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQR---------G-IADRFLAQGQV 71 (488)
T ss_pred CcceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHc---------C-cHHHHHhcCCc
Confidence 3589999999999999999999999999999998632211223333333333333321 0 11111111110
Q ss_pred cc-CCcceE-E--------EecCceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEE
Q 008503 150 KD-RSLKGA-V--------VYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDT 219 (563)
Q Consensus 150 ~~-~~~~~~-~--------~~~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i 219 (563)
.. ..+... + .+....+....+...|.+.+++.|++++++++|+++..+++ .+ .|.+ .++ .++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~--~v-~v~~---~~g--~~i 143 (488)
T PRK06834 72 AQVTGFAATRLDISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDT--GV-DVEL---SDG--RTL 143 (488)
T ss_pred cccceeeeEecccccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCC--eE-EEEE---CCC--CEE
Confidence 00 000000 0 01111233355667778888888999999999999988753 33 2332 234 379
Q ss_pred EeCeEEEccCcChhhhhhhhcCCCC
Q 008503 220 YAKVVVNAAGPFCDSVRKLADQNVQ 244 (563)
Q Consensus 220 ~A~~VI~AtG~~s~~l~~~~g~~~~ 244 (563)
+|++||.|+|.+| .+++.+|...+
T Consensus 144 ~a~~vVgADG~~S-~vR~~lgi~~~ 167 (488)
T PRK06834 144 RAQYLVGCDGGRS-LVRKAAGIDFP 167 (488)
T ss_pred EeCEEEEecCCCC-CcHhhcCCCCC
Confidence 9999999999999 57777776543
No 76
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.38 E-value=2.5e-11 Score=127.31 Aligned_cols=152 Identities=25% Similarity=0.245 Sum_probs=99.5
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhhhc-
Q 008503 71 PLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQA- 149 (563)
Q Consensus 71 ~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 149 (563)
.+||+|||||++|+++|+.|++.|++|+|||+.+...-..++...+-+.+++.+++... . +.+...+..
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~---------~-~~i~~~~~~~ 71 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGL---------W-DRLEALGVPP 71 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHcCC---------h-hhhhhccCCc
Confidence 47999999999999999999999999999999821112223555555556665554210 0 111111110
Q ss_pred ------ccCCc-ceEE-------EecCceechHHHHHHHHHHHHHCC-CEEEcCcEEEEEEEcCCCCcEEEEEEEECCCC
Q 008503 150 ------KDRSL-KGAV-------VYYDGQMNDSRLNVGLALTAALAG-AAVLNHAEVISLIKDEASNRIIGARIRNNLSG 214 (563)
Q Consensus 150 ------~~~~~-~~~~-------~~~~~~~~~~~l~~~l~~~a~~~G-~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g 214 (563)
..... .-.+ ......+....+...|.+.+.+.+ ++++++++|+.+..++ +.|. +++. .+|
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~--~~v~-v~l~--~dG 146 (387)
T COG0654 72 LHVMVVDDGGRRLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDG--DGVT-VTLS--FDG 146 (387)
T ss_pred eeeEEEecCCceeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcC--CceE-EEEc--CCC
Confidence 00000 0000 111223455678888888888776 8999999999999886 4565 5553 144
Q ss_pred cEEEEEeCeEEEccCcChhhhhhhhc
Q 008503 215 KEFDTYAKVVVNAAGPFCDSVRKLAD 240 (563)
Q Consensus 215 ~~~~i~A~~VI~AtG~~s~~l~~~~g 240 (563)
+ +++||+||.|+|.+|. +++..+
T Consensus 147 ~--~~~a~llVgADG~~S~-vR~~~~ 169 (387)
T COG0654 147 E--TLDADLLVGADGANSA-VRRAAG 169 (387)
T ss_pred c--EEecCEEEECCCCchH-HHHhcC
Confidence 3 8999999999999995 566666
No 77
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.37 E-value=1.2e-11 Score=136.09 Aligned_cols=165 Identities=18% Similarity=0.125 Sum_probs=101.1
Q ss_pred cCCCCccEEEECCchHHHHHHHHHHHCC---CcEEEEeccCCCCCCccCCCCccccchh-----hHHHH----hhccC-c
Q 008503 67 NNSNPLDILVIGGGATGCGVALDAATRG---LRVGLVEREDFSSGTSSRSTKLIHGGVR-----YLEKA----VFNLD-Y 133 (563)
Q Consensus 67 ~~~~~~DVvIIGaGiaG~~~A~~la~~G---~~V~llEk~~~~~g~s~~~~~~~~~g~~-----~~~~~----~~~~~-~ 133 (563)
|++.++||||||+|++|+++|+.|++.| ++|+||||....++.|..+.|.+..... -.+.. ...-. .
T Consensus 1 ~~~~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~~s~~a~Gg~~a~~~~~~~ds~e~~~~d~~~~g~~~ 80 (577)
T PRK06069 1 MEVLKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRSHSVSAEGGTAAVLYPEKGDSFDLHAYDTVKGSDFL 80 (577)
T ss_pred CCceecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCCCceecccccceeeccccCCCHHHHHHHHHHhhccc
Confidence 4577899999999999999999999998 8999999998666655544433321110 00000 00000 0
Q ss_pred ccHHH----------HHHHHHHhhhcccCCcceEE--EecCcee----------chHHHHHHHHHHHHH-CCCEEEcCcE
Q 008503 134 GQLKL----------VFHALEERKQAKDRSLKGAV--VYYDGQM----------NDSRLNVGLALTAAL-AGAAVLNHAE 190 (563)
Q Consensus 134 ~~~~~----------~~~~l~~~~~~~~~~~~~~~--~~~~~~~----------~~~~l~~~l~~~a~~-~G~~i~~~~~ 190 (563)
.+..+ ..+.+.+.+......-.+.+ ....+.. ....+...|.+.+.+ .|+++++++.
T Consensus 81 ~d~~lv~~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~~g~~~~r~~~~~d~tG~~i~~~L~~~~~~~~gv~i~~~~~ 160 (577)
T PRK06069 81 ADQDAVEVFVREAPEEIRFLDHWGVPWSRRPDGRISQRPFGGMSFPRTTFAADKTGFYIMHTLYSRALRFDNIHFYDEHF 160 (577)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCeeEecCCCcEeeeecCCcccceeeEcCCCchHHHHHHHHHHHHhcCCCEEEECCE
Confidence 01111 12333333322100000000 1111110 123466777777766 6999999999
Q ss_pred EEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccCcChh
Q 008503 191 VISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 233 (563)
Q Consensus 191 v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~~s~ 233 (563)
|+++..++ ++|.||.+.+..+++...+.|+.||+|||.++.
T Consensus 161 v~~Li~~~--g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~ 201 (577)
T PRK06069 161 VTSLIVEN--GVFKGVTAIDLKRGEFKVFQAKAGIIATGGAGR 201 (577)
T ss_pred EEEEEEEC--CEEEEEEEEEcCCCeEEEEECCcEEEcCchhcc
Confidence 99998764 789999876644665567899999999999864
No 78
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.37 E-value=1.7e-11 Score=134.89 Aligned_cols=162 Identities=19% Similarity=0.194 Sum_probs=100.1
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccch-----h-----hHHHHhh---ccCcc-cH
Q 008503 71 PLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGV-----R-----YLEKAVF---NLDYG-QL 136 (563)
Q Consensus 71 ~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~-----~-----~~~~~~~---~~~~~-~~ 136 (563)
.+||||||+|++|+++|+++++.|++|+||||....+++|..+.|.+.... . ++...+. .+... ..
T Consensus 3 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~g~s~~a~Ggi~a~~~~~~~~Ds~e~~~~d~~~~g~~~~d~~~v 82 (589)
T PRK08641 3 KGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKRSHSVCAQGGINGAVNTKGEGDSPWIHFDDTVYGGDFLANQPPV 82 (589)
T ss_pred CccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCCCcccccCCCeEEecCcCCCCCCHHHHHHHHHHhcCCcCCHHHH
Confidence 469999999999999999999999999999999876666655544332111 0 0111000 00000 01
Q ss_pred -------HHHHHHHHHhhhccc--CC--c----ceEEEe----cCceechHHHHHHHHHHHHHCC----CEEEcCcEEEE
Q 008503 137 -------KLVFHALEERKQAKD--RS--L----KGAVVY----YDGQMNDSRLNVGLALTAALAG----AAVLNHAEVIS 193 (563)
Q Consensus 137 -------~~~~~~l~~~~~~~~--~~--~----~~~~~~----~~~~~~~~~l~~~l~~~a~~~G----~~i~~~~~v~~ 193 (563)
....+.|.+.+.... .+ + .++..+ +.+......+...|.+.+.+.+ ++++.++.+++
T Consensus 83 ~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~R~~~~~~~tG~~i~~~L~~~~~~~~~~~~i~i~~~~~~~~ 162 (589)
T PRK08641 83 KAMCEAAPGIIHLLDRMGVMFNRTPEGLLDFRRFGGTLHHRTAFAGATTGQQLLYALDEQVRRYEVAGLVTKYEGWEFLG 162 (589)
T ss_pred HHHHHHHHHHHHHHHHcCCCcccCCCCcEeeeccCCeecccccccCCCcHHHHHHHHHHHHHhhhccCCcEEEeeEEEEE
Confidence 112233333332211 00 0 001100 0111123456667776666543 78999999999
Q ss_pred EEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccCcChh
Q 008503 194 LIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 233 (563)
Q Consensus 194 l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~~s~ 233 (563)
+..+++ |+|.||.+.+..+++...+.|+.||+|||.++.
T Consensus 163 Li~~~~-g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~ 201 (589)
T PRK08641 163 AVLDDE-GVCRGIVAQDLFTMEIESFPADAVIMATGGPGI 201 (589)
T ss_pred EEECCC-CEEEEEEEEECCCCcEEEEECCEEEECCCCCcC
Confidence 998644 799999998755666667899999999999885
No 79
>PRK12839 hypothetical protein; Provisional
Probab=99.36 E-value=1.5e-11 Score=134.53 Aligned_cols=68 Identities=26% Similarity=0.327 Sum_probs=54.4
Q ss_pred chHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEE-eCeEEEccCcChhhhh
Q 008503 166 NDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTY-AKVVVNAAGPFCDSVR 236 (563)
Q Consensus 166 ~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~-A~~VI~AtG~~s~~l~ 236 (563)
++..++..|.+.+.+.|++|++++.|++|..+++ ++|+||.+.+ .++. ..+. ++.||+|||.|+.+..
T Consensus 212 ~g~~l~~~L~~~a~~~Gv~i~~~t~v~~Li~~~~-g~V~GV~~~~-~~g~-~~i~aak~VVLAtGGf~~n~~ 280 (572)
T PRK12839 212 NGTALTGRLLRSADDLGVDLRVSTSATSLTTDKN-GRVTGVRVQG-PDGA-VTVEATRGVVLATGGFPNDVD 280 (572)
T ss_pred cHHHHHHHHHHHHHHCCCEEEcCCEEEEEEECCC-CcEEEEEEEe-CCCc-EEEEeCCEEEEcCCCcccCHH
Confidence 4566778888999999999999999999987654 7999998875 3454 3444 4899999999987543
No 80
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.36 E-value=2.1e-11 Score=133.30 Aligned_cols=163 Identities=25% Similarity=0.319 Sum_probs=99.5
Q ss_pred CCCccEEEECCchHHHHHHHHHHHCCCcEEEEeccCC-CCCCccCCCCccccc--h-----hhHHHHhh---ccCccc-H
Q 008503 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDF-SSGTSSRSTKLIHGG--V-----RYLEKAVF---NLDYGQ-L 136 (563)
Q Consensus 69 ~~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~-~~g~s~~~~~~~~~g--~-----~~~~~~~~---~~~~~~-~ 136 (563)
+.++||||||+|.+|+++|+.+ +.|++|+||||... .+|++..+.+.+... . .++..... .+...+ .
T Consensus 5 ~~~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~~~gG~s~~a~gg~~~~~~~~d~~~~~~~d~~~~~~~~~d~~lv 83 (543)
T PRK06263 5 IMITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLFGKSGCTVMAEGGYNAVLNPEDSFEKHFEDTMKGGAYLNDPKLV 83 (543)
T ss_pred eeccCEEEECccHHHHHHHHHH-hcCCCEEEEEccCCCCCccccccCceEEEeCCCCCCHHHHHHHHHHHhcCCCCHHHH
Confidence 4578999999999999999999 99999999999864 345554443333211 0 01111110 000000 1
Q ss_pred H-------HHHHHHHHhhhccc---CC-c----ceEEEec----CceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEc
Q 008503 137 K-------LVFHALEERKQAKD---RS-L----KGAVVYY----DGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKD 197 (563)
Q Consensus 137 ~-------~~~~~l~~~~~~~~---~~-~----~~~~~~~----~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~ 197 (563)
+ ...+++.+.+.... .. + .++..+. .+......+...|.+.+.+.|+++++++.|++|..+
T Consensus 84 ~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~t~v~~Li~~ 163 (543)
T PRK06263 84 EILVKEAPKRLKDLEKFGALFDRTEDGEIAQRPFGGQSFNRTCYAGDRTGHEMMMGLMEYLIKERIKILEEVMAIKLIVD 163 (543)
T ss_pred HHHHHHHHHHHHHHHHcCCcceeCCCCceeecccCCeEcCeEEECCCCCHHHHHHHHHHHHhcCCCEEEeCeEeeeeEEe
Confidence 1 11223333222111 00 0 0111000 000113467778888888899999999999999887
Q ss_pred CCCCcEEEEEEEECCCCcEEEEEeCeEEEccCcChh
Q 008503 198 EASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 233 (563)
Q Consensus 198 ~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~~s~ 233 (563)
++ ++|.||.+.+..++....|.|+.||+|||.++.
T Consensus 164 ~~-~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~ 198 (543)
T PRK06263 164 EN-REVIGAIFLDLRNGEIFPIYAKATILATGGAGQ 198 (543)
T ss_pred CC-cEEEEEEEEECCCCcEEEEEcCcEEECCCCCCC
Confidence 53 459999877644566668999999999999874
No 81
>PRK08013 oxidoreductase; Provisional
Probab=99.36 E-value=1.9e-11 Score=128.81 Aligned_cols=153 Identities=22% Similarity=0.256 Sum_probs=95.1
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCC---CCc--cCCCCccccchhhHHHHhhccCcccHHHHHHHHHH
Q 008503 71 PLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSS---GTS--SRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEE 145 (563)
Q Consensus 71 ~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~---g~s--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~ 145 (563)
++||+|||||++|+++|+.|+++|++|+|||+.+... |.+ .+..++.+.+.+.+++.. +++.+.+
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lG----------l~~~~~~ 72 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLG----------VWQDILA 72 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcC----------Cchhhhh
Confidence 5899999999999999999999999999999985311 111 122233344455554321 0111111
Q ss_pred hh-hc-------ccCCcceE-EE-------ecCceechHHHHHHHHHHHHHC-CCEEEcCcEEEEEEEcCCCCcEEEEEE
Q 008503 146 RK-QA-------KDRSLKGA-VV-------YYDGQMNDSRLNVGLALTAALA-GAAVLNHAEVISLIKDEASNRIIGARI 208 (563)
Q Consensus 146 ~~-~~-------~~~~~~~~-~~-------~~~~~~~~~~l~~~l~~~a~~~-G~~i~~~~~v~~l~~~~~~g~v~gv~~ 208 (563)
.. .. ........ +. +....++...+...|.+.+.+. |++++++++|++++.+++ .+ .|.+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~--~v-~v~~ 149 (400)
T PRK08013 73 RRASCYHGMEVWDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGEN--EA-FLTL 149 (400)
T ss_pred hcCccccEEEEEeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCC--eE-EEEE
Confidence 00 00 00000000 00 0112355667778888888775 899999999999987653 33 2333
Q ss_pred EECCCCcEEEEEeCeEEEccCcChhhhhhhhcCC
Q 008503 209 RNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQN 242 (563)
Q Consensus 209 ~d~~~g~~~~i~A~~VI~AtG~~s~~l~~~~g~~ 242 (563)
.+| .+++||+||.|+|.+|. +++.++.+
T Consensus 150 ---~~g--~~i~a~lvVgADG~~S~-vR~~~~~~ 177 (400)
T PRK08013 150 ---KDG--SMLTARLVVGADGANSW-LRNKADIP 177 (400)
T ss_pred ---cCC--CEEEeeEEEEeCCCCcH-HHHHcCCC
Confidence 234 36999999999999985 66666655
No 82
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.36 E-value=3.5e-11 Score=127.58 Aligned_cols=158 Identities=21% Similarity=0.204 Sum_probs=94.4
Q ss_pred CCCccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCC-ccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhh
Q 008503 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGT-SSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERK 147 (563)
Q Consensus 69 ~~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~-s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~ 147 (563)
..++||+|||||++|+++|+.|+++|++|+||||.+..... .++...+.+.+.+.+++. . +++.+.+..
T Consensus 16 ~~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~l----G------l~~~l~~~~ 85 (415)
T PRK07364 16 SLTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGI----G------VWEKILPQI 85 (415)
T ss_pred ccccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCCCCcEEEechHHHHHHHHC----C------hhhhhHhhc
Confidence 34689999999999999999999999999999998632211 122222333444444432 0 011111111
Q ss_pred hc-------ccCCc-ceEEEe------cCc-eechHHHHHHHHHHHHHC-CCEEEcCcEEEEEEEcCCCCcEEEEEEEEC
Q 008503 148 QA-------KDRSL-KGAVVY------YDG-QMNDSRLNVGLALTAALA-GAAVLNHAEVISLIKDEASNRIIGARIRNN 211 (563)
Q Consensus 148 ~~-------~~~~~-~~~~~~------~~~-~~~~~~l~~~l~~~a~~~-G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~ 211 (563)
.. ..... ...+.. ..+ ......+...|.+.+.+. |++++++++|+++..+++ .+ .|.+.+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~--~~-~v~~~~- 161 (415)
T PRK07364 86 GKFRQIRLSDADYPGVVKFQPTDLGTEALGYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEYQQD--AA-TVTLEI- 161 (415)
T ss_pred CCccEEEEEeCCCCceeeeccccCCCCccEEEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCC--ee-EEEEcc-
Confidence 00 00000 000100 011 223345667777777664 799999999999987653 33 344432
Q ss_pred CCCcEEEEEeCeEEEccCcChhhhhhhhcCC
Q 008503 212 LSGKEFDTYAKVVVNAAGPFCDSVRKLADQN 242 (563)
Q Consensus 212 ~~g~~~~i~A~~VI~AtG~~s~~l~~~~g~~ 242 (563)
++...+++||.||.|+|.+|. +++..+..
T Consensus 162 -~~~~~~i~adlvIgADG~~S~-vR~~~~~~ 190 (415)
T PRK07364 162 -EGKQQTLQSKLVVAADGARSP-IRQAAGIK 190 (415)
T ss_pred -CCcceEEeeeEEEEeCCCCch-hHHHhCCC
Confidence 233357999999999999994 56666654
No 83
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=99.36 E-value=5.5e-11 Score=124.66 Aligned_cols=151 Identities=27% Similarity=0.387 Sum_probs=95.5
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCC----CCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHH-hh
Q 008503 73 DILVIGGGATGCGVALDAATRGLRVGLVEREDFSS----GTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEE-RK 147 (563)
Q Consensus 73 DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~----g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~-~~ 147 (563)
||+|||||++|+++|+.|++.|++|+|+||.+... +.+++..++...+.+.+.+. . +.+.+.+ ..
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~l----G------l~~~~~~~~~ 70 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKL----G------VWDKIEPDRA 70 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHC----C------chhhhhhhcC
Confidence 89999999999999999999999999999996422 11223333333344444332 0 0111111 11
Q ss_pred hc------ccCCcce--EEE-------ecCceechHHHHHHHHHHHHHCC-CEEEcCcEEEEEEEcCCCCcEEEEEEEEC
Q 008503 148 QA------KDRSLKG--AVV-------YYDGQMNDSRLNVGLALTAALAG-AAVLNHAEVISLIKDEASNRIIGARIRNN 211 (563)
Q Consensus 148 ~~------~~~~~~~--~~~-------~~~~~~~~~~l~~~l~~~a~~~G-~~i~~~~~v~~l~~~~~~g~v~gv~~~d~ 211 (563)
.. ....-.. .+. +....++...+...|.+.+.+.| ++++++++|+++..++ +.+ .|..
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~--~~~-~v~~--- 144 (385)
T TIGR01988 71 QPIRDIHVSDGGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRHS--DHV-ELTL--- 144 (385)
T ss_pred CCceEEEEEeCCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEecC--Cee-EEEE---
Confidence 00 0000000 000 01123567788889999998888 9999999999998765 333 2433
Q ss_pred CCCcEEEEEeCeEEEccCcChhhhhhhhcCC
Q 008503 212 LSGKEFDTYAKVVVNAAGPFCDSVRKLADQN 242 (563)
Q Consensus 212 ~~g~~~~i~A~~VI~AtG~~s~~l~~~~g~~ 242 (563)
.+|. .+.+|.||.|+|.+|. +++.++.+
T Consensus 145 ~~g~--~~~~~~vi~adG~~S~-vr~~l~~~ 172 (385)
T TIGR01988 145 DDGQ--QLRARLLVGADGANSK-VRQLAGIP 172 (385)
T ss_pred CCCC--EEEeeEEEEeCCCCCH-HHHHcCCC
Confidence 3443 6899999999999985 66666644
No 84
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.35 E-value=1.6e-11 Score=134.77 Aligned_cols=61 Identities=25% Similarity=0.342 Sum_probs=49.7
Q ss_pred HHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeC-eEEEccCcChhh
Q 008503 171 NVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAK-VVVNAAGPFCDS 234 (563)
Q Consensus 171 ~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~-~VI~AtG~~s~~ 234 (563)
+..|.+.+++.|++|+++++|++|..+++ |+|+||++.. +++...|+|+ .||+|||.|..+
T Consensus 216 ~~~l~~~~~~~gv~i~~~~~~~~Li~d~~-g~V~Gv~~~~--~~~~~~i~a~~aVilAtGGf~~N 277 (584)
T PRK12835 216 VARLRLALKDAGVPLWLDSPMTELITDPD-GAVVGAVVER--EGRTLRIGARRGVILATGGFDHD 277 (584)
T ss_pred HHHHHHHHHhCCceEEeCCEEEEEEECCC-CcEEEEEEEe--CCcEEEEEeceeEEEecCcccCC
Confidence 33456677788999999999999998765 7999998863 5556789997 699999999853
No 85
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.35 E-value=2.4e-11 Score=127.61 Aligned_cols=155 Identities=25% Similarity=0.292 Sum_probs=96.6
Q ss_pred cCCCCccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHh
Q 008503 67 NNSNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEER 146 (563)
Q Consensus 67 ~~~~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~ 146 (563)
|.+..+||+|||||++|+++|+.|+++|++|+|||+.+... ..+..++.+.+.+.+++. . +++.+.+.
T Consensus 3 ~~~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~--~~r~~~l~~~s~~~l~~l---------g-l~~~~~~~ 70 (388)
T PRK07494 3 MEKEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYA--DLRTTALLGPSIRFLERL---------G-LWARLAPH 70 (388)
T ss_pred CCCCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCC--CcchhhCcHHHHHHHHHh---------C-chhhhHhh
Confidence 34667999999999999999999999999999999986321 133344444444444331 0 11111111
Q ss_pred hhc-------ccCC-c-ce---EE-------EecCceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEE
Q 008503 147 KQA-------KDRS-L-KG---AV-------VYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGAR 207 (563)
Q Consensus 147 ~~~-------~~~~-~-~~---~~-------~~~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~ 207 (563)
... .... . .. .+ .+....++...+...|.+.+.+.+...+++++|+++..+++ .+ .|.
T Consensus 71 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~~~~~~v~~i~~~~~--~~-~v~ 147 (388)
T PRK07494 71 AAPLQSMRIVDATGRLIRAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAELPNITRFGDEAESVRPRED--EV-TVT 147 (388)
T ss_pred cceeeEEEEEeCCCCCCCCceEEEcHHhcCCCccEEEeEhHHHHHHHHHHHhcCCCcEEECCeeEEEEEcCC--eE-EEE
Confidence 100 0000 0 00 00 01112356677888888888777544488999999987653 33 243
Q ss_pred EEECCCCcEEEEEeCeEEEccCcChhhhhhhhcCC
Q 008503 208 IRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQN 242 (563)
Q Consensus 208 ~~d~~~g~~~~i~A~~VI~AtG~~s~~l~~~~g~~ 242 (563)
+ .++ .+++||.||.|+|.+|. +++..+.+
T Consensus 148 ~---~~g--~~~~a~~vI~AdG~~S~-vr~~~g~~ 176 (388)
T PRK07494 148 L---ADG--TTLSARLVVGADGRNSP-VREAAGIG 176 (388)
T ss_pred E---CCC--CEEEEeEEEEecCCCch-hHHhcCCC
Confidence 3 234 36999999999999985 66666655
No 86
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=99.35 E-value=2.8e-11 Score=133.17 Aligned_cols=159 Identities=19% Similarity=0.222 Sum_probs=98.1
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccc-----h-hhHHHHhh-------ccCccc-H--
Q 008503 73 DILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGG-----V-RYLEKAVF-------NLDYGQ-L-- 136 (563)
Q Consensus 73 DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g-----~-~~~~~~~~-------~~~~~~-~-- 136 (563)
||||||+|++|+++|+.|++.|++|+||||.....+.|..+.|-+... . ...+.... .+...+ .
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~~~g~s~~a~Gg~~~~~~~~~~~d~~e~~~~d~~~~~~~~~d~~~v~~ 80 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYPTRSHTVAAQGGMAAALGNVDPDDSWEWHAYDTVKGSDYLADQDAVEY 80 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCcchhhccCeEeecCCCCCCccHHHHHHHHHHHhCCCCCHHHHHH
Confidence 899999999999999999999999999999976555544433322111 1 11111100 000000 0
Q ss_pred -----HHHHHHHHHhhhcc---cCC-c----ceEEEe----cCceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCC
Q 008503 137 -----KLVFHALEERKQAK---DRS-L----KGAVVY----YDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEA 199 (563)
Q Consensus 137 -----~~~~~~l~~~~~~~---~~~-~----~~~~~~----~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~ 199 (563)
....+.+.+.+... ... + .++..+ +........+...|.+.+.+.|+++++++.|++|..++
T Consensus 81 ~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~~~v~~L~~~~- 159 (566)
T TIGR01812 81 MCQEAPKAILELEHWGVPFSRTPDGRIAQRPFGGHSKDRTCYAADKTGHALLHTLYEQCLKLGVSFFNEYFALDLIHDD- 159 (566)
T ss_pred HHHHHHHHHHHHHHcCCcceecCCCcEeeccccccccCeeEECCCCCHHHHHHHHHHHHHHcCCEEEeccEEEEEEEeC-
Confidence 11123333332211 000 0 000000 00011234567778888888899999999999998864
Q ss_pred CCcEEEEEEEECCCCcEEEEEeCeEEEccCcChh
Q 008503 200 SNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 233 (563)
Q Consensus 200 ~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~~s~ 233 (563)
++|.||.+.+..+++...+.|+.||+|||.++.
T Consensus 160 -g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~~ 192 (566)
T TIGR01812 160 -GRVRGVVAYDLKTGEIVFFRAKAVVLATGGYGR 192 (566)
T ss_pred -CEEEEEEEEECCCCcEEEEECCeEEECCCcccC
Confidence 799999886644666567999999999999874
No 87
>PRK06175 L-aspartate oxidase; Provisional
Probab=99.35 E-value=1.7e-11 Score=130.15 Aligned_cols=159 Identities=16% Similarity=0.227 Sum_probs=95.6
Q ss_pred CCccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCcccc--c----hhhHHHHhhcc----CcccH---
Q 008503 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHG--G----VRYLEKAVFNL----DYGQL--- 136 (563)
Q Consensus 70 ~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~--g----~~~~~~~~~~~----~~~~~--- 136 (563)
.++||||||+|.+|+++|+.++ .|++|+||||.+..++.|..+.+.+.. + ..+++..+..- +....
T Consensus 3 ~~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~gg~s~~a~ggi~~~~~~d~~~~~~~d~~~~g~~~~d~~lv~~~ 81 (433)
T PRK06175 3 LYADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNECNTYLAQGGISVARNKDDITSFVEDTLKAGQYENNLEAVKIL 81 (433)
T ss_pred ccccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCCCchHHHhHhheeCCCCCCHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 4689999999999999999985 699999999998666655444332221 0 11122111100 10001
Q ss_pred ----HHHHHHHHHhhhcccCCcce-EEEecC----------ceechHHHHHHHHHHHHH-CCCEEEcCcEEEEEEEcCCC
Q 008503 137 ----KLVFHALEERKQAKDRSLKG-AVVYYD----------GQMNDSRLNVGLALTAAL-AGAAVLNHAEVISLIKDEAS 200 (563)
Q Consensus 137 ----~~~~~~l~~~~~~~~~~~~~-~~~~~~----------~~~~~~~l~~~l~~~a~~-~G~~i~~~~~v~~l~~~~~~ 200 (563)
....+++.+.+......... .+.... .......+...|.+.+.+ .|++|+++++|++|..++
T Consensus 82 ~~~s~e~i~wL~~~Gv~f~~~~~~~~~~~~g~~~~~r~~~~~~~~g~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~~-- 159 (433)
T PRK06175 82 ANESIENINKLIDMGLNFDKDEKELSYTKEGAHSVNRIVHFKDNTGKKVEKILLKKVKKRKNITIIENCYLVDIIEND-- 159 (433)
T ss_pred HHHHHHHHHHHHHcCCccccCCCceeeeccCccccCeEEecCCCChHHHHHHHHHHHHhcCCCEEEECcEeeeeEecC--
Confidence 11223333333211000000 000000 011234677778877765 599999999999998764
Q ss_pred CcEEEEEEEECCCCcEEEEEeCeEEEccCcChh
Q 008503 201 NRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 233 (563)
Q Consensus 201 g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~~s~ 233 (563)
++|.||.+.+ ++....+.|+.||+|||.++.
T Consensus 160 ~~v~Gv~~~~--~g~~~~i~Ak~VILAtGG~~~ 190 (433)
T PRK06175 160 NTCIGAICLK--DNKQINIYSKVTILATGGIGG 190 (433)
T ss_pred CEEEEEEEEE--CCcEEEEEcCeEEEccCcccc
Confidence 6899987653 344457999999999999764
No 88
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=99.34 E-value=2.7e-11 Score=133.26 Aligned_cols=68 Identities=28% Similarity=0.338 Sum_probs=55.7
Q ss_pred chHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEe-CeEEEccCcChhhhhh
Q 008503 166 NDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYA-KVVVNAAGPFCDSVRK 237 (563)
Q Consensus 166 ~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A-~~VI~AtG~~s~~l~~ 237 (563)
++..++..|.+.+++.|++|+++++|++|..++ ++|+||++.+ ++....++| +.||+|||.|+.++..
T Consensus 215 ~g~~l~~~L~~~a~~~Gv~i~~~t~v~~l~~~~--g~v~GV~~~~--~~~~~~i~a~k~VVlAtGg~~~n~~~ 283 (581)
T PRK06134 215 NGNALVARLLKSAEDLGVRIWESAPARELLRED--GRVAGAVVET--PGGLQEIRARKGVVLAAGGFPHDPAR 283 (581)
T ss_pred CHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeC--CEEEEEEEEE--CCcEEEEEeCCEEEEcCCCcccCHHH
Confidence 445677888899999999999999999998764 7899998864 334457899 9999999999976544
No 89
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=99.34 E-value=1.7e-11 Score=144.33 Aligned_cols=171 Identities=25% Similarity=0.326 Sum_probs=104.8
Q ss_pred HHHHhhcCCCCccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccc-cchhhHH------------HH
Q 008503 61 SALIAANNSNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIH-GGVRYLE------------KA 127 (563)
Q Consensus 61 ~~~~~~~~~~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~-~g~~~~~------------~~ 127 (563)
.+|. ++.++||||||+|.+|+++|+++++.|++|+||||.+..+|+|..+.+.++ .+.++.. +.
T Consensus 402 ~~i~---~t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~s~~s~ggi~~~~t~~q~~~gi~D~~~~~~~d 478 (1167)
T PTZ00306 402 KRIA---GSLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGNSAKATSGINGWGTRAQAKQDVLDGGKFFERD 478 (1167)
T ss_pred cccc---cCCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCchhhcccccccCCchhhhhhcccccHHHHHHH
Confidence 5565 578899999999999999999999999999999999877777654444332 2222111 10
Q ss_pred -hhc--cCcccHHH----------HHHHHHHhhhcccC-------CcceEEEec---Cceec--hHHHHHHHHHHHHH--
Q 008503 128 -VFN--LDYGQLKL----------VFHALEERKQAKDR-------SLKGAVVYY---DGQMN--DSRLNVGLALTAAL-- 180 (563)
Q Consensus 128 -~~~--~~~~~~~~----------~~~~l~~~~~~~~~-------~~~~~~~~~---~~~~~--~~~l~~~l~~~a~~-- 180 (563)
... -...+..+ ..+++.+.+..... .......+. ++... ...+...|.+.+++
T Consensus 479 ~~~~~~~~~~d~~lv~~~~~~s~e~idwL~~~Gv~f~~~~~~gg~~~~r~~~~~~~~~g~~~~~G~~i~~~l~~~~~~~~ 558 (1167)
T PTZ00306 479 THLSGKGGHCDPGLVKTLSVKSADAISWLSSLGVPLTVLSQLGGASRKRCHRAPDKKDGTPVPIGFTIMRTLEDHIRTKL 558 (1167)
T ss_pred HHHhccCCCCCHHHHHHHHHhhHHHHHHHHHcCCCceeeeccCCCCCCceeecCcccCCCcCCcHHHHHHHHHHHHHhhc
Confidence 000 00011111 12333332221100 000001100 11111 23455566666554
Q ss_pred -CCCEEEcCcEEEEEEEcCC----C---CcEEEEEEEEC--CCCcEEEEEeCeEEEccCcChhh
Q 008503 181 -AGAAVLNHAEVISLIKDEA----S---NRIIGARIRNN--LSGKEFDTYAKVVVNAAGPFCDS 234 (563)
Q Consensus 181 -~G~~i~~~~~v~~l~~~~~----~---g~v~gv~~~d~--~~g~~~~i~A~~VI~AtG~~s~~ 234 (563)
.|++|++++++++|+.+++ + ++|+||.+++. .+++...|+||.||+|||.|..+
T Consensus 559 ~~gv~i~~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~~~~~~g~~~~i~AkaVILATGGf~~N 622 (1167)
T PTZ00306 559 SGRVTIMTETTVTSLLSESSARPDGVREIRVTGVRYKQASDASGQVMDLLADAVILATGGFSND 622 (1167)
T ss_pred cCCcEEEECCEEEEEEecCCcccCCCccceEEEEEEEecccCCCcEEEEEeceEEEecCCcccC
Confidence 4999999999999998642 1 27999999862 16666789999999999999864
No 90
>PRK07045 putative monooxygenase; Reviewed
Probab=99.34 E-value=2.2e-10 Score=120.41 Aligned_cols=157 Identities=18% Similarity=0.244 Sum_probs=94.6
Q ss_pred CCCCccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhh
Q 008503 68 NSNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERK 147 (563)
Q Consensus 68 ~~~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~ 147 (563)
.+..+||+|||||++|+++|+.|++.|++|+|+|+.+...- .++...+.+.+.+.+.+.. +.+.+.+..
T Consensus 2 ~~~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~-~~~~~~l~~~~~~~L~~lG----------l~~~~~~~~ 70 (388)
T PRK07045 2 KNNPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRA-QNGADLLKPSGIGVVRAMG----------LLDDVFAAG 70 (388)
T ss_pred CCceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccC-CCcccccCccHHHHHHHcC----------CHHHHHhcc
Confidence 45679999999999999999999999999999999863211 1111223344555544320 011111110
Q ss_pred hc--------ccCCcceEEEe----cCc---eechHHHHHHHHHHHH-HCCCEEEcCcEEEEEEEcCCCCcEEEEEEEEC
Q 008503 148 QA--------KDRSLKGAVVY----YDG---QMNDSRLNVGLALTAA-LAGAAVLNHAEVISLIKDEASNRIIGARIRNN 211 (563)
Q Consensus 148 ~~--------~~~~~~~~~~~----~~~---~~~~~~l~~~l~~~a~-~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~ 211 (563)
.. ........+.+ ..+ .+....+...|.+.+. ..|++++++++|+++..+++ +.++.|..
T Consensus 71 ~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~-~~~~~v~~--- 146 (388)
T PRK07045 71 GLRRDAMRLYHDKELIASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDAD-GTVTSVTL--- 146 (388)
T ss_pred cccccceEEecCCcEEEEecCCccccCCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCC-CcEEEEEe---
Confidence 00 00000000100 011 1344556677777764 46899999999999998764 44555654
Q ss_pred CCCcEEEEEeCeEEEccCcChhhhhhhhcC
Q 008503 212 LSGKEFDTYAKVVVNAAGPFCDSVRKLADQ 241 (563)
Q Consensus 212 ~~g~~~~i~A~~VI~AtG~~s~~l~~~~g~ 241 (563)
.+|+ ++.++.||.|+|.+|.....+.+.
T Consensus 147 ~~g~--~~~~~~vIgADG~~S~vR~~~~~~ 174 (388)
T PRK07045 147 SDGE--RVAPTVLVGADGARSMIRDDVLRM 174 (388)
T ss_pred CCCC--EEECCEEEECCCCChHHHHHhhCC
Confidence 3343 789999999999998543334443
No 91
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=99.34 E-value=1.5e-11 Score=135.69 Aligned_cols=163 Identities=28% Similarity=0.316 Sum_probs=97.6
Q ss_pred CCCccEEEECCchHHHHHHHHHHHC--CCcEEEEeccCCCCCCccCCCCc--ccc----c--h-hhHHHHhh---ccCcc
Q 008503 69 SNPLDILVIGGGATGCGVALDAATR--GLRVGLVEREDFSSGTSSRSTKL--IHG----G--V-RYLEKAVF---NLDYG 134 (563)
Q Consensus 69 ~~~~DVvIIGaGiaG~~~A~~la~~--G~~V~llEk~~~~~g~s~~~~~~--~~~----g--~-~~~~~~~~---~~~~~ 134 (563)
+.++||||||+|++|+++|+.|++. |.+|+||||.....+.+ .+.+. +.. . . .+...... .+...
T Consensus 9 ~~~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~s~~-~a~G~~~~~~~~~~~ds~e~~~~d~~~~~~~~~d~ 87 (608)
T PRK06854 9 EVDTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKRSGA-VAQGLSAINAYIGEGETPEDYVRYVRKDLMGIVRE 87 (608)
T ss_pred eeEeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCCCcc-cccCccccccccccCCCHHHHHHHHHHhccCCCCH
Confidence 4568999999999999999999998 99999999997533222 11221 110 0 0 01111000 00000
Q ss_pred c--------HHHHHHHHHHhhhcccCCcceEEEecC---ceechHHHHHHHHHHHHHCC-CEEEcCcEEEEEEEcCCCCc
Q 008503 135 Q--------LKLVFHALEERKQAKDRSLKGAVVYYD---GQMNDSRLNVGLALTAALAG-AAVLNHAEVISLIKDEASNR 202 (563)
Q Consensus 135 ~--------~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~l~~~a~~~G-~~i~~~~~v~~l~~~~~~g~ 202 (563)
+ .....+.+.+.+........+.+.+.. ..+++..+...|.+.+++.| +++++++.|++|..++ ++
T Consensus 88 ~lv~~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~g~~~~~~~G~~~~~~L~~~a~~~ggV~i~~~~~v~~Li~~~--g~ 165 (608)
T PRK06854 88 DLVYDIARHVDSVVHLFEEWGLPIWKDENGKYVRRGRWQIMINGESYKPIVAEAAKKALGDNVLNRVFITDLLVDD--NR 165 (608)
T ss_pred HHHHHHHHhHHHHHHHHHHcCCeeeecCCCCccccCCccCCCChHHHHHHHHHHHHhcCCCEEEeCCEEEEEEEeC--CE
Confidence 0 011122333322211000001111100 01345567777878887775 9999999999998764 68
Q ss_pred EEEEEEEECCCCcEEEEEeCeEEEccCcChhh
Q 008503 203 IIGARIRNNLSGKEFDTYAKVVVNAAGPFCDS 234 (563)
Q Consensus 203 v~gv~~~d~~~g~~~~i~A~~VI~AtG~~s~~ 234 (563)
|+||.+.+..+++...+.|+.||+|||.|+..
T Consensus 166 v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~ 197 (608)
T PRK06854 166 IAGAVGFSVRENKFYVFKAKAVIVATGGAAGI 197 (608)
T ss_pred EEEEEEEEccCCcEEEEECCEEEECCCchhhc
Confidence 99987755455655689999999999998864
No 92
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.34 E-value=2.5e-11 Score=133.37 Aligned_cols=163 Identities=20% Similarity=0.225 Sum_probs=98.5
Q ss_pred CCccEEEECCchHHHHHHHHHHHC--CCcEEEEeccCCCCCCccCCCCccccch------hhHHHHh-------hccCcc
Q 008503 70 NPLDILVIGGGATGCGVALDAATR--GLRVGLVEREDFSSGTSSRSTKLIHGGV------RYLEKAV-------FNLDYG 134 (563)
Q Consensus 70 ~~~DVvIIGaGiaG~~~A~~la~~--G~~V~llEk~~~~~g~s~~~~~~~~~g~------~~~~~~~-------~~~~~~ 134 (563)
.++||||||||++|+++|++|++. |++|+||||....++.|....|-+.... ...+... ..+...
T Consensus 2 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~gg~s~~a~GGi~a~~~~~~~~ds~e~~~~d~~~~~~~l~d~ 81 (575)
T PRK05945 2 LEHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIRSHSVAAQGGIAASLKNVDPEDSWEAHAFDTVKGSDYLADQ 81 (575)
T ss_pred CcccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCchhhHHhccchhhhccCCCCCCCHHHHHHHHHHHhCCCCCH
Confidence 358999999999999999999987 4899999999765544433332222111 0111100 001000
Q ss_pred c-HHH-------HHHHHHHhhhcc---cCC-c----ceEEEe----cCceechHHHHHHHHHHHHHCCCEEEcCcEEEEE
Q 008503 135 Q-LKL-------VFHALEERKQAK---DRS-L----KGAVVY----YDGQMNDSRLNVGLALTAALAGAAVLNHAEVISL 194 (563)
Q Consensus 135 ~-~~~-------~~~~l~~~~~~~---~~~-~----~~~~~~----~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l 194 (563)
+ .+. ..+.+.+.+... ... + .++..+ +........+...|.+.+.+.|+++++++.|++|
T Consensus 82 ~~v~~l~~~a~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~tG~~i~~~L~~~~~~~gi~i~~~t~v~~L 161 (575)
T PRK05945 82 DAVAILTQEAPDVIIDLEHLGVLFSRLPDGRIAQRAFGGHSHNRTCYAADKTGHAILHELVNNLRRYGVTIYDEWYVMRL 161 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCceEECCCCcEeeccccccccCeeEecCCCChHHHHHHHHHHHhhCCCEEEeCcEEEEE
Confidence 0 111 112233222211 000 0 000000 0000112567788888888899999999999999
Q ss_pred EEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccCcChhh
Q 008503 195 IKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDS 234 (563)
Q Consensus 195 ~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~~s~~ 234 (563)
..++ ++|.|+.+.+..+++...+.|+.||+|||.++..
T Consensus 162 ~~~~--g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~~~ 199 (575)
T PRK05945 162 ILED--NQAKGVVMYHIADGRLEVVRAKAVMFATGGYGRV 199 (575)
T ss_pred EEEC--CEEEEEEEEEcCCCeEEEEECCEEEECCCCCcCC
Confidence 8764 7899998765456665679999999999998754
No 93
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=99.33 E-value=8.6e-11 Score=128.62 Aligned_cols=157 Identities=18% Similarity=0.208 Sum_probs=95.3
Q ss_pred CCccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhhhc
Q 008503 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQA 149 (563)
Q Consensus 70 ~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 149 (563)
.++||+|||||++|+++|+.|+++|++|+||||.+... ..++..++...+.+.+++. . +.+.+.+....
T Consensus 9 ~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~-~~~ra~~l~~~~~~~L~~l----G------l~~~l~~~~~~ 77 (538)
T PRK06183 9 HDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLY-DLPRAVGIDDEALRVLQAI----G------LADEVLPHTTP 77 (538)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC-CCCceeeeCHHHHHHHHHc----C------ChhHHHhhccc
Confidence 46899999999999999999999999999999985221 1223333333333333321 0 01111111100
Q ss_pred -------ccCC-cceEEE--------e-cCceechHHHHHHHHHHHHHC-CCEEEcCcEEEEEEEcCCCCcEEEEEEEEC
Q 008503 150 -------KDRS-LKGAVV--------Y-YDGQMNDSRLNVGLALTAALA-GAAVLNHAEVISLIKDEASNRIIGARIRNN 211 (563)
Q Consensus 150 -------~~~~-~~~~~~--------~-~~~~~~~~~l~~~l~~~a~~~-G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~ 211 (563)
.... ....+. + ....++...+...|.+.+.+. |++++++++|++++.+++ .| .|++++
T Consensus 78 ~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~--~v-~v~~~~- 153 (538)
T PRK06183 78 NHGMRFLDAKGRCLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDDD--GV-TVTLTD- 153 (538)
T ss_pred CCceEEEcCCCCEEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCC--eE-EEEEEc-
Confidence 0000 000010 0 011233345566677777664 999999999999998763 34 345543
Q ss_pred CCCcEEEEEeCeEEEccCcChhhhhhhhcCC
Q 008503 212 LSGKEFDTYAKVVVNAAGPFCDSVRKLADQN 242 (563)
Q Consensus 212 ~~g~~~~i~A~~VI~AtG~~s~~l~~~~g~~ 242 (563)
.+|+..+++||+||.|+|.+|. +++.++..
T Consensus 154 ~~G~~~~i~ad~vVgADG~~S~-vR~~lg~~ 183 (538)
T PRK06183 154 ADGQRETVRARYVVGCDGANSF-VRRTLGVP 183 (538)
T ss_pred CCCCEEEEEEEEEEecCCCchh-HHHHcCCe
Confidence 2555568999999999999985 56666654
No 94
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=99.33 E-value=6.7e-11 Score=123.98 Aligned_cols=151 Identities=24% Similarity=0.340 Sum_probs=94.5
Q ss_pred cEEEECCchHHHHHHHHHHHCC-CcEEEEeccCCCCCCc---cCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhhh
Q 008503 73 DILVIGGGATGCGVALDAATRG-LRVGLVEREDFSSGTS---SRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQ 148 (563)
Q Consensus 73 DVvIIGaGiaG~~~A~~la~~G-~~V~llEk~~~~~g~s---~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 148 (563)
||+|||||++|+++|+.|+++| ++|+|+||.+...-.+ .+..++...+.+.+++. .. .+.+.+...
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~l----gl------~~~~~~~~~ 70 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKL----GL------WPKLAPFAT 70 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHC----CC------hhhhHhhcC
Confidence 8999999999999999999999 9999999985322111 12223333333333321 10 111111111
Q ss_pred c------ccCCcceEEE---------ecCceechHHHHHHHHHHHHH-CCCEEEcCcEEEEEEEcCCCCcEEEEEEEECC
Q 008503 149 A------KDRSLKGAVV---------YYDGQMNDSRLNVGLALTAAL-AGAAVLNHAEVISLIKDEASNRIIGARIRNNL 212 (563)
Q Consensus 149 ~------~~~~~~~~~~---------~~~~~~~~~~l~~~l~~~a~~-~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~ 212 (563)
. ......+... +....++...+...|.+.+.+ .|++++++++|+++..+++ .+ .|.+ .
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~--~~-~v~~---~ 144 (382)
T TIGR01984 71 PILDIHVSDQGHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQD--YV-RVTL---D 144 (382)
T ss_pred ccceEEEEcCCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCC--eE-EEEE---C
Confidence 0 0000000000 011236778889999998888 4999999999999987653 33 2333 3
Q ss_pred CCcEEEEEeCeEEEccCcChhhhhhhhcCC
Q 008503 213 SGKEFDTYAKVVVNAAGPFCDSVRKLADQN 242 (563)
Q Consensus 213 ~g~~~~i~A~~VI~AtG~~s~~l~~~~g~~ 242 (563)
++. ++.||.||.|+|.+|. +++.++.+
T Consensus 145 ~g~--~~~ad~vV~AdG~~S~-vr~~l~~~ 171 (382)
T TIGR01984 145 NGQ--QLRAKLLIAADGANSK-VRELLSIP 171 (382)
T ss_pred CCC--EEEeeEEEEecCCChH-HHHHcCCC
Confidence 343 6899999999999985 66776654
No 95
>PRK08275 putative oxidoreductase; Provisional
Probab=99.33 E-value=1.6e-11 Score=134.44 Aligned_cols=164 Identities=24% Similarity=0.218 Sum_probs=97.5
Q ss_pred CCCccEEEECCchHHHHHHHHHHHC--CCcEEEEeccCCC-CCCccCCC-Ccc---ccchhhHHHHhh----ccC-cccH
Q 008503 69 SNPLDILVIGGGATGCGVALDAATR--GLRVGLVEREDFS-SGTSSRST-KLI---HGGVRYLEKAVF----NLD-YGQL 136 (563)
Q Consensus 69 ~~~~DVvIIGaGiaG~~~A~~la~~--G~~V~llEk~~~~-~g~s~~~~-~~~---~~g~~~~~~~~~----~~~-~~~~ 136 (563)
+.++||||||+|++|+++|+.+++. |++|+||||.... +|++.... ++. ..+..-.+.... .-. ..+.
T Consensus 7 ~~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~~~g~~~~~~~g~~~~~~~~~d~~~~~~~d~~~~~~~~~d~ 86 (554)
T PRK08275 7 EVETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVKRSGAISMGMDGLNNAVIPGHATPEQYTKEITIANDGIVDQ 86 (554)
T ss_pred eEecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCchhhhhhhHhhhhccCCCCHHHHHHHHHHhcCCCccH
Confidence 4569999999999999999999987 7999999999753 33221111 110 111111111100 000 0011
Q ss_pred H----------HHHHHHHHhhhcccCCcceEEEe-----cCce----echHHHHHHHHHHHHHCCCEEEcCcEEEEEEEc
Q 008503 137 K----------LVFHALEERKQAKDRSLKGAVVY-----YDGQ----MNDSRLNVGLALTAALAGAAVLNHAEVISLIKD 197 (563)
Q Consensus 137 ~----------~~~~~l~~~~~~~~~~~~~~~~~-----~~~~----~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~ 197 (563)
. ...+.+.+.+........+.+.. .... .....+...|.+.+.+.|+++++++.|++|..+
T Consensus 87 ~~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~~~~~~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~ 166 (554)
T PRK08275 87 KAVYAYAEHSFETIQQLDRWGVKFEKDETGDYAVKKVHHMGSYVLPMPEGHDIKKVLYRQLKRARVLITNRIMATRLLTD 166 (554)
T ss_pred HHHHHHHHhhHHHHHHHHHCCCeeEeCCCCCEeeecccccCcccccCCChHHHHHHHHHHHHHCCCEEEcceEEEEEEEc
Confidence 1 11223333222111000011100 0000 012356778888888899999999999999886
Q ss_pred CCCCcEEEEEEEECCCCcEEEEEeCeEEEccCcChh
Q 008503 198 EASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 233 (563)
Q Consensus 198 ~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~~s~ 233 (563)
++ ++|.||.+.+..+++...+.|+.||+|||.++.
T Consensus 167 ~~-g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~ 201 (554)
T PRK08275 167 AD-GRVAGALGFDCRTGEFLVIRAKAVILCCGAAGR 201 (554)
T ss_pred CC-CeEEEEEEEecCCCcEEEEECCEEEECCCCccc
Confidence 44 789999876545666567899999999999875
No 96
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=99.33 E-value=1.8e-10 Score=127.66 Aligned_cols=162 Identities=17% Similarity=0.192 Sum_probs=99.0
Q ss_pred CCccEEEECCchHHHHHHHHHHHC-CCcEEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhhh
Q 008503 70 NPLDILVIGGGATGCGVALDAATR-GLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQ 148 (563)
Q Consensus 70 ~~~DVvIIGaGiaG~~~A~~la~~-G~~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 148 (563)
.++||+|||||++|+++|+.|+++ |++|+|||+.+- ....++..++....++.+++. .+ .+.+.+.+.
T Consensus 31 ~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~-~~~~grA~gl~prtleiL~~l---------Gl-~d~l~~~g~ 99 (634)
T PRK08294 31 DEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPG-RLELGQADGIACRTMEMFQAF---------GF-AERILKEAY 99 (634)
T ss_pred CCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCC-CCCCCeeeEEChHHHHHHHhc---------cc-hHHHHhhcc
Confidence 468999999999999999999995 999999999852 122344444444444444431 11 111111110
Q ss_pred c-------ccC-----Cc---------ceEEE-ecCceechHHHHHHHHHHHHHCC--CEEEcCcEEEEEEEcCCCCcEE
Q 008503 149 A-------KDR-----SL---------KGAVV-YYDGQMNDSRLNVGLALTAALAG--AAVLNHAEVISLIKDEASNRII 204 (563)
Q Consensus 149 ~-------~~~-----~~---------~~~~~-~~~~~~~~~~l~~~l~~~a~~~G--~~i~~~~~v~~l~~~~~~g~v~ 204 (563)
. ... .+ ..... +....++..++...|.+.+.+.| +++.++++++++..+++++.-+
T Consensus 100 ~~~~~~~~~~~~~~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V 179 (634)
T PRK08294 100 WINETAFWKPDPADPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPV 179 (634)
T ss_pred cccceEEEcCCCccccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCE
Confidence 0 000 00 00000 11123445567778888887776 4788999999998764312222
Q ss_pred EEEEEEC---CCCcEEEEEeCeEEEccCcChhhhhhhhcCCC
Q 008503 205 GARIRNN---LSGKEFDTYAKVVVNAAGPFCDSVRKLADQNV 243 (563)
Q Consensus 205 gv~~~d~---~~g~~~~i~A~~VI~AtG~~s~~l~~~~g~~~ 243 (563)
.|.+++. .+|+..+++||+||.|.|.+|. +++.+|...
T Consensus 180 ~v~l~~~~~~~~g~~~tv~A~~lVGaDGa~S~-VR~~lgi~~ 220 (634)
T PRK08294 180 TVTLRRTDGEHEGEEETVRAKYVVGCDGARSR-VRKAIGREL 220 (634)
T ss_pred EEEEEECCCCCCCceEEEEeCEEEECCCCchH-HHHhcCCCc
Confidence 4566542 1454468999999999999985 667676653
No 97
>PRK07190 hypothetical protein; Provisional
Probab=99.33 E-value=8.2e-11 Score=126.58 Aligned_cols=157 Identities=20% Similarity=0.222 Sum_probs=96.3
Q ss_pred cCCCCccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHh
Q 008503 67 NNSNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEER 146 (563)
Q Consensus 67 ~~~~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~ 146 (563)
|++..+||+|||||++|+++|+.|+++|++|+||||.+.. ...++..++.....+.++.. . +++.+.+.
T Consensus 1 m~~~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~-~~~gra~~l~~~tle~L~~l---------G-l~~~l~~~ 69 (487)
T PRK07190 1 MSTQVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGP-LEVGRADALNARTLQLLELV---------D-LFDELYPL 69 (487)
T ss_pred CCCccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcc-cccccceEeCHHHHHHHHhc---------C-hHHHHHhh
Confidence 3456799999999999999999999999999999998632 22344433333333333321 0 11111111
Q ss_pred hhc-------ccCCc-----------ceEEEecCceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEE
Q 008503 147 KQA-------KDRSL-----------KGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARI 208 (563)
Q Consensus 147 ~~~-------~~~~~-----------~~~~~~~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~ 208 (563)
+.. ....+ .....+....+....+...|.+.+.+.|++++++++|+++..+++ .+. +.+
T Consensus 70 ~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~--~v~-v~~ 146 (487)
T PRK07190 70 GKPCNTSSVWANGKFISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQA--GCL-TTL 146 (487)
T ss_pred CccceeEEEecCCceEeeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCC--eeE-EEE
Confidence 100 00000 000000011123345556677778889999999999999988763 332 222
Q ss_pred EECCCCcEEEEEeCeEEEccCcChhhhhhhhcCCC
Q 008503 209 RNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNV 243 (563)
Q Consensus 209 ~d~~~g~~~~i~A~~VI~AtG~~s~~l~~~~g~~~ 243 (563)
.++ .+++|++||.|+|.+| .+++.+|.+.
T Consensus 147 ---~~g--~~v~a~~vVgADG~~S-~vR~~lgi~f 175 (487)
T PRK07190 147 ---SNG--ERIQSRYVIGADGSRS-FVRNHFNVPF 175 (487)
T ss_pred ---CCC--cEEEeCEEEECCCCCH-HHHHHcCCCc
Confidence 234 3799999999999988 4666667653
No 98
>PLN02985 squalene monooxygenase
Probab=99.33 E-value=8.4e-11 Score=127.03 Aligned_cols=164 Identities=20% Similarity=0.262 Sum_probs=98.5
Q ss_pred CCCccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHHHH-HHHHHHhh
Q 008503 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLV-FHALEERK 147 (563)
Q Consensus 69 ~~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~l~~~~ 147 (563)
..++||+|||||++|+++|+.|++.|++|+|+||..... .......+.++|.+.+++.... ..+... ........
T Consensus 41 ~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~~~-~~~~g~~L~p~g~~~L~~LGl~---d~l~~~~~~~~~~~~ 116 (514)
T PLN02985 41 DGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREP-ERMMGEFMQPGGRFMLSKLGLE---DCLEGIDAQKATGMA 116 (514)
T ss_pred CCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCCCC-ccccccccCchHHHHHHHcCCc---chhhhccCcccccEE
Confidence 567899999999999999999999999999999974211 1112222334555555542100 000000 00000000
Q ss_pred hcccCCcceEEE-----------ecCceechHHHHHHHHHHHHHC-CCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCc
Q 008503 148 QAKDRSLKGAVV-----------YYDGQMNDSRLNVGLALTAALA-GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGK 215 (563)
Q Consensus 148 ~~~~~~~~~~~~-----------~~~~~~~~~~l~~~l~~~a~~~-G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~ 215 (563)
. ...+-..... .....++..++...|.+.+.+. |++++.+ .|+++..++ +.+.+|++.+ .+|+
T Consensus 117 v-~~~g~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~V~i~~g-tvv~li~~~--~~v~gV~~~~-~dG~ 191 (514)
T PLN02985 117 V-YKDGKEAVAPFPVDNNNFPYEPSARSFHNGRFVQRLRQKASSLPNVRLEEG-TVKSLIEEK--GVIKGVTYKN-SAGE 191 (514)
T ss_pred E-EECCEEEEEeCCCCCcCCCcccceeeeecHHHHHHHHHHHHhCCCeEEEee-eEEEEEEcC--CEEEEEEEEc-CCCC
Confidence 0 0000000000 1112456678888888888765 6888865 677776654 5677888765 4565
Q ss_pred EEEEEeCeEEEccCcChhhhhhhhcCC
Q 008503 216 EFDTYAKVVVNAAGPFCDSVRKLADQN 242 (563)
Q Consensus 216 ~~~i~A~~VI~AtG~~s~~l~~~~g~~ 242 (563)
..++.||.||.|+|.+|. +++.++..
T Consensus 192 ~~~~~AdLVVgADG~~S~-vR~~l~~~ 217 (514)
T PLN02985 192 ETTALAPLTVVCDGCYSN-LRRSLNDN 217 (514)
T ss_pred EEEEECCEEEECCCCchH-HHHHhccC
Confidence 567889999999999996 55555543
No 99
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.33 E-value=4.5e-11 Score=126.30 Aligned_cols=152 Identities=21% Similarity=0.285 Sum_probs=93.9
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCC-------ccCCCCccccchhhHHHHhhccCcccHHHHHHHH
Q 008503 71 PLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGT-------SSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHAL 143 (563)
Q Consensus 71 ~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~-------s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l 143 (563)
.+||+|||||++|+++|+.|+++|++|+|+|+.+..... ..+...+.+.+.+.+++. . +++.+
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~l----G------l~~~l 71 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERL----G------AWDGI 71 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHC----C------hhhhh
Confidence 479999999999999999999999999999998521100 011122222333333321 0 01112
Q ss_pred HHhhh-c-------ccCCcceEEE--------ec-CceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEE
Q 008503 144 EERKQ-A-------KDRSLKGAVV--------YY-DGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGA 206 (563)
Q Consensus 144 ~~~~~-~-------~~~~~~~~~~--------~~-~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv 206 (563)
.+... . ..... .... .. ...++...+...|.+.+.+.|++++++++|+++..+++ .+ .|
T Consensus 72 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~--~v-~v 147 (405)
T PRK05714 72 AARRASPYSEMQVWDGSGT-GQIHFSAASVHAEVLGHIVENRVVQDALLERLHDSDIGLLANARLEQMRRSGD--DW-LL 147 (405)
T ss_pred hHhhCccceeEEEEcCCCC-ceEEecccccCCCccEEEEEhHHHHHHHHHHHhcCCCEEEcCCEEEEEEEcCC--eE-EE
Confidence 11100 0 00110 0010 01 12345566777888888888999999999999987753 33 24
Q ss_pred EEEECCCCcEEEEEeCeEEEccCcChhhhhhhhcCC
Q 008503 207 RIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQN 242 (563)
Q Consensus 207 ~~~d~~~g~~~~i~A~~VI~AtG~~s~~l~~~~g~~ 242 (563)
.+ .+| .+++||.||.|+|.+| .+++.++.+
T Consensus 148 ~~---~~g--~~~~a~~vVgAdG~~S-~vR~~lg~~ 177 (405)
T PRK05714 148 TL---ADG--RQLRAPLVVAADGANS-AVRRLAGCA 177 (405)
T ss_pred EE---CCC--CEEEeCEEEEecCCCc-hhHHhcCCC
Confidence 33 234 3699999999999999 577777765
No 100
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.32 E-value=4.2e-11 Score=131.81 Aligned_cols=164 Identities=17% Similarity=0.170 Sum_probs=100.9
Q ss_pred CCccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccch-----hhHHHHhhc----c-CcccHHH-
Q 008503 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGV-----RYLEKAVFN----L-DYGQLKL- 138 (563)
Q Consensus 70 ~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~-----~~~~~~~~~----~-~~~~~~~- 138 (563)
.++||||||+|++|+++|++|++. .+|+||||.....++|+.+.|.+.... ...+....+ - ...+...
T Consensus 4 ~~~DVlVIG~G~AGl~AAl~aa~~-~~VilleK~~~~~g~s~~a~Ggi~a~~~~~~~D~~e~~~~d~~~~g~~~~d~~~v 82 (583)
T PRK08205 4 HRYDVVIVGAGGAGMRAAIEAGPR-ARTAVLTKLYPTRSHTGAAQGGMCAALANVEEDNWEWHTFDTVKGGDYLVDQDAA 82 (583)
T ss_pred eeccEEEECccHHHHHHHHHHHhC-CCEEEEeCCCCCCCCchhhhcchhhcccCCCCCCHHHHHHHHHHhhcCCCCHHHH
Confidence 468999999999999999999986 999999999766666655544332111 101100000 0 0001111
Q ss_pred ---------HHHHHHHhhhccc--C-C-c----ceEEE--------e---cCceechHHHHHHHHHHHHHCCCEEEcCcE
Q 008503 139 ---------VFHALEERKQAKD--R-S-L----KGAVV--------Y---YDGQMNDSRLNVGLALTAALAGAAVLNHAE 190 (563)
Q Consensus 139 ---------~~~~l~~~~~~~~--~-~-~----~~~~~--------~---~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~ 190 (563)
..+.+.+.+.... . . + .++.. . +........+...|.+.+.+.|+++++++.
T Consensus 83 ~~~~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~s~~~~~~~~~r~~~~~~~tG~~i~~~L~~~~~~~gv~i~~~~~ 162 (583)
T PRK08205 83 EIMAKEAIDAVLDLEKMGLPFNRTPEGKIDQRRFGGHTRDHGKAPVRRACYAADRTGHMILQTLYQNCVKHGVEFFNEFY 162 (583)
T ss_pred HHHHHHHHHHHHHHHHcCCccccCCCCceeecccccccccccCCCccceeccCCCCHHHHHHHHHHHHHhcCCEEEeCCE
Confidence 1223333222210 0 0 0 00000 0 000012356777888888899999999999
Q ss_pred EEEEEEcCC--CCcEEEEEEEECCCCcEEEEEeCeEEEccCcChhh
Q 008503 191 VISLIKDEA--SNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDS 234 (563)
Q Consensus 191 v~~l~~~~~--~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~~s~~ 234 (563)
|++|..+++ +++|.||.+.+..+++...|.|+.||+|||.++..
T Consensus 163 v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~ 208 (583)
T PRK08205 163 VLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSGRV 208 (583)
T ss_pred EEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCccc
Confidence 999987541 15899998865456665679999999999998754
No 101
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=99.32 E-value=2.6e-11 Score=133.19 Aligned_cols=164 Identities=16% Similarity=0.149 Sum_probs=99.7
Q ss_pred CCCccEEEECCchHHHHHHHHHHHC--CCcEEEEeccCCCCCCccCCCCccccch---hhHHHHhh-------ccCccc-
Q 008503 69 SNPLDILVIGGGATGCGVALDAATR--GLRVGLVEREDFSSGTSSRSTKLIHGGV---RYLEKAVF-------NLDYGQ- 135 (563)
Q Consensus 69 ~~~~DVvIIGaGiaG~~~A~~la~~--G~~V~llEk~~~~~g~s~~~~~~~~~g~---~~~~~~~~-------~~~~~~- 135 (563)
+.++||||||+|++|+++|+.|++. |.+|+||||....+++|..+.|.+.... ...+.... .+...+
T Consensus 2 t~~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g~s~~a~Gg~~~~~~~~ds~e~~~~d~~~~g~~~~d~~~ 81 (582)
T PRK09231 2 TFQADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRSHTVAAEGGSAAVAQDHDSFDYHFHDTVAGGDWLCEQDV 81 (582)
T ss_pred ceeeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCChhhccchhhhhcCCCCCHHHHHHHHHHhcccCCCHHH
Confidence 5679999999999999999999987 5899999999766665554444332110 00111100 010000
Q ss_pred HH-------HHHHHHHHhhhccc---CC-c----ceEEEe----cCceechHHHHHHHHHHHHHC-CCEEEcCcEEEEEE
Q 008503 136 LK-------LVFHALEERKQAKD---RS-L----KGAVVY----YDGQMNDSRLNVGLALTAALA-GAAVLNHAEVISLI 195 (563)
Q Consensus 136 ~~-------~~~~~l~~~~~~~~---~~-~----~~~~~~----~~~~~~~~~l~~~l~~~a~~~-G~~i~~~~~v~~l~ 195 (563)
.+ ...++|.+.+.... .+ + .++..+ +...-....+...|.+.+.+. |++++.++.+++|.
T Consensus 82 v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~~~i~i~~~~~v~~Li 161 (582)
T PRK09231 82 VEYFVHHCPTEMTQLEQWGCPWSRKPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLKYPQIQRFDEHFVLDIL 161 (582)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcccCCCCceeeeccccccCCeeEecCCCcHHHHHHHHHHHhhcCCCcEEEeCeEEEEEE
Confidence 11 11233333333211 10 0 011000 000001235666777777664 89999999999999
Q ss_pred EcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccCcChhh
Q 008503 196 KDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDS 234 (563)
Q Consensus 196 ~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~~s~~ 234 (563)
.++ ++|.||.+.+..+++...+.|+.||+|||.++..
T Consensus 162 ~~~--g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~l 198 (582)
T PRK09231 162 VDD--GHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRV 198 (582)
T ss_pred EeC--CEEEEEEEEEcCCCcEEEEECCEEEECCCCCcCC
Confidence 864 7899998765456666689999999999998853
No 102
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.32 E-value=5.5e-11 Score=129.80 Aligned_cols=61 Identities=31% Similarity=0.452 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEe-CeEEEccCcChhh
Q 008503 170 LNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYA-KVVVNAAGPFCDS 234 (563)
Q Consensus 170 l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A-~~VI~AtG~~s~~ 234 (563)
++..|.+.+++.|++|+++++|++|..+ + ++|+||.+.. ++....+.| +.||+|||.|+..
T Consensus 219 l~~~L~~~~~~~Gv~i~~~t~v~~Li~~-~-g~V~GV~~~~--~g~~~~i~a~kaVILAtGGf~~n 280 (564)
T PRK12845 219 LAAGLFAGVLRAGIPIWTETSLVRLTDD-G-GRVTGAVVDH--RGREVTVTARRGVVLAAGGFDHD 280 (564)
T ss_pred HHHHHHHHHHHCCCEEEecCEeeEEEec-C-CEEEEEEEEE--CCcEEEEEcCCEEEEecCCcccc
Confidence 4556777788899999999999999875 3 7999998764 444566777 6899999999865
No 103
>PRK07395 L-aspartate oxidase; Provisional
Probab=99.31 E-value=2.7e-11 Score=131.99 Aligned_cols=162 Identities=21% Similarity=0.220 Sum_probs=97.7
Q ss_pred CCCccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccch---h----hHHHHhhccC-cccHHH--
Q 008503 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGV---R----YLEKAVFNLD-YGQLKL-- 138 (563)
Q Consensus 69 ~~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~---~----~~~~~~~~~~-~~~~~~-- 138 (563)
+.++||||||+|++|+++|+++++ |.+|+||||.+..+|+|..+.|.+.... . ++......-. ..+..+
T Consensus 7 ~~e~DVlVVG~G~AGl~AAi~A~~-G~~V~lieK~~~~gg~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~~~~d~~lv~ 85 (553)
T PRK07395 7 PSQFDVLVVGSGAAGLYAALCLPS-HLRVGLITKDTLKTSASDWAQGGIAAAIAPDDSPKLHYEDTLKAGAGLCDPEAVR 85 (553)
T ss_pred cccCCEEEECccHHHHHHHHHhhc-CCCEEEEEccCCCCCchhhhcccceecccCCCCHHHHHHHHHHhcCCCCCHHHHH
Confidence 567999999999999999999975 9999999999876666655544332111 0 1111111000 011111
Q ss_pred --------HHHHHHHhhhcccCCcce-EEEecCce----------echHHHHHHHHHHHHH-CCCEEEcCcEEEEEEEcC
Q 008503 139 --------VFHALEERKQAKDRSLKG-AVVYYDGQ----------MNDSRLNVGLALTAAL-AGAAVLNHAEVISLIKDE 198 (563)
Q Consensus 139 --------~~~~l~~~~~~~~~~~~~-~~~~~~~~----------~~~~~l~~~l~~~a~~-~G~~i~~~~~v~~l~~~~ 198 (563)
..+++.+.+......-.. ...+..+. .....+...|.+.+.+ .|+++++++.|++|..++
T Consensus 86 ~~~~~s~~~i~wL~~~Gv~f~~~~~~~~~~~~~g~s~~r~~~~~d~~G~~i~~~L~~~~~~~~gi~i~~~~~v~~Li~~~ 165 (553)
T PRK07395 86 FLVEQAPEAIASLVEMGVAFDRHGQHLALTLEAAHSRPRVLHAADTTGRAIVTTLTEQVLQRPNIEIISQALALSLWLEP 165 (553)
T ss_pred HHHHHHHHHHHHHHhcCCeeecCCCceeeecccccccCeEEEeCCCChHHHHHHHHHHHhhcCCcEEEECcChhhheecC
Confidence 123333332221100000 00000000 0124567778777765 499999999999998864
Q ss_pred CCCcEEEEEEEECCCCcEEEEEeCeEEEccCcChh
Q 008503 199 ASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 233 (563)
Q Consensus 199 ~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~~s~ 233 (563)
++++|.||.+.+ ++....+.|+.||+|||.++.
T Consensus 166 ~~g~v~Gv~~~~--~g~~~~i~AkaVILATGG~~~ 198 (553)
T PRK07395 166 ETGRCQGISLLY--QGQITWLRAGAVILATGGGGQ 198 (553)
T ss_pred CCCEEEEEEEEE--CCeEEEEEcCEEEEcCCCCcc
Confidence 226899998764 555557899999999999754
No 104
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.31 E-value=1.8e-11 Score=127.62 Aligned_cols=148 Identities=24% Similarity=0.301 Sum_probs=78.8
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCC------CCCccCCC--------Ccccc----chhhHHHHhhccCc
Q 008503 72 LDILVIGGGATGCGVALDAATRGLRVGLVEREDFS------SGTSSRST--------KLIHG----GVRYLEKAVFNLDY 133 (563)
Q Consensus 72 ~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~------~g~s~~~~--------~~~~~----g~~~~~~~~~~~~~ 133 (563)
|||+|||||++|+.||+.|++.|++|+|+||++.. .|. ++.. .-++. .-+++...+..+.
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~-GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~- 78 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGN-GRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFS- 78 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGG-GT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS--
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCC-CCccccccccchhhHhhhcccchHHHHHHHhcCC-
Confidence 79999999999999999999999999999999632 111 1110 00000 1122222222221
Q ss_pred ccHHHHHHHHHHhhhcccCCcceEEEecCceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCC
Q 008503 134 GQLKLVFHALEERKQAKDRSLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLS 213 (563)
Q Consensus 134 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~ 213 (563)
...+.+.+.+.+......-.+-++|.. -....++..|.+.+++.|++++++++|.+|+.++ +.+..|.. .+
T Consensus 79 --~~d~~~ff~~~Gv~~~~~~~gr~fP~s--~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~--~~~f~v~~---~~ 149 (409)
T PF03486_consen 79 --PEDLIAFFEELGVPTKIEEDGRVFPKS--DKASSVVDALLEELKRLGVEIHFNTRVKSIEKKE--DGVFGVKT---KN 149 (409)
T ss_dssp --HHHHHHHHHHTT--EEE-STTEEEETT----HHHHHHHHHHHHHHHT-EEE-S--EEEEEEET--TEEEEEEE---TT
T ss_pred --HHHHHHHHHhcCCeEEEcCCCEECCCC--CcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecC--CceeEeec---cC
Confidence 123344555544431111111122222 1346788899999999999999999999999876 46666654 12
Q ss_pred CcEEEEEeCeEEEccCcCh
Q 008503 214 GKEFDTYAKVVVNAAGPFC 232 (563)
Q Consensus 214 g~~~~i~A~~VI~AtG~~s 232 (563)
+ ..+.||.||+|+|.-|
T Consensus 150 ~--~~~~a~~vILAtGG~S 166 (409)
T PF03486_consen 150 G--GEYEADAVILATGGKS 166 (409)
T ss_dssp T--EEEEESEEEE----SS
T ss_pred c--ccccCCEEEEecCCCC
Confidence 2 5899999999999755
No 105
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=99.31 E-value=1.2e-10 Score=124.13 Aligned_cols=156 Identities=21% Similarity=0.356 Sum_probs=95.5
Q ss_pred ccEEEECCchHHHHHHHHHHH----CCCcEEEEeccCCCC----------C-CccCCCCccccchhhHHHHhhccCcccH
Q 008503 72 LDILVIGGGATGCGVALDAAT----RGLRVGLVEREDFSS----------G-TSSRSTKLIHGGVRYLEKAVFNLDYGQL 136 (563)
Q Consensus 72 ~DVvIIGaGiaG~~~A~~la~----~G~~V~llEk~~~~~----------g-~s~~~~~~~~~g~~~~~~~~~~~~~~~~ 136 (563)
|||+|||||++|+++|+.|++ +|++|+|||+.+... + ..++..++.+.+.+.+++.
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~l--------- 71 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKI--------- 71 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHc---------
Confidence 799999999999999999999 899999999953111 0 1234444555555555432
Q ss_pred HHHHHHHHHhhh-c------ccCCcceEEEe--------cCceechHHHHHHHHHHHHHCC---CEEEcCcEEEEEEEc-
Q 008503 137 KLVFHALEERKQ-A------KDRSLKGAVVY--------YDGQMNDSRLNVGLALTAALAG---AAVLNHAEVISLIKD- 197 (563)
Q Consensus 137 ~~~~~~l~~~~~-~------~~~~~~~~~~~--------~~~~~~~~~l~~~l~~~a~~~G---~~i~~~~~v~~l~~~- 197 (563)
. +++.+.+... . ..........+ ....+....+...|.+.+.+.+ ++++++++|+++..+
T Consensus 72 G-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~ 150 (437)
T TIGR01989 72 G-AWDHIQSDRIQPFGRMQVWDGCSLALIRFDRDNGKEDMACIIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPS 150 (437)
T ss_pred C-chhhhhhhcCCceeeEEEecCCCCceEEeecCCCCCceEEEEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEecc
Confidence 0 1122221110 0 00000001111 1123455667778888887764 999999999999753
Q ss_pred ----CCCCcEEEEEEEECCCCcEEEEEeCeEEEccCcChhhhhhhhcCCCC
Q 008503 198 ----EASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQ 244 (563)
Q Consensus 198 ----~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~~s~~l~~~~g~~~~ 244 (563)
++...+ .|.+ .+| .+++|++||.|+|.+|. +++..+.+..
T Consensus 151 ~~~~~~~~~v-~v~~---~~g--~~i~a~llVgADG~~S~-vR~~~gi~~~ 194 (437)
T TIGR01989 151 KYPNDNSNWV-HITL---SDG--QVLYTKLLIGADGSNSN-VRKAANIDTT 194 (437)
T ss_pred ccccCCCCce-EEEE---cCC--CEEEeeEEEEecCCCCh-hHHHcCCCcc
Confidence 111222 3433 344 37999999999999995 6677776643
No 106
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=99.31 E-value=3.1e-11 Score=132.18 Aligned_cols=164 Identities=15% Similarity=0.021 Sum_probs=95.0
Q ss_pred CCCccEEEECCchHHHHHHHHHHHCCCcEEEEeccC--CCCCCccCCCCcccc-chhhH-------------HHHhhc--
Q 008503 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVERED--FSSGTSSRSTKLIHG-GVRYL-------------EKAVFN-- 130 (563)
Q Consensus 69 ~~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~--~~~g~s~~~~~~~~~-g~~~~-------------~~~~~~-- 130 (563)
+.++||||||+|.+|+++|+.|++.|++|+||||.+ ..+|+|..+.+.++. +.... ......
T Consensus 2 ~~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG~s~~s~Gg~~~~~~~~q~~~gi~ds~e~~~~d~~~~~~ 81 (549)
T PRK12834 2 AMDADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQAFWSLGGLFLVDSPEQRRLGIKDSLELALQDWLGSAG 81 (549)
T ss_pred CccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCceeccCCceeccCCHHHHhcCcccCHHHHHHHHHhccC
Confidence 357999999999999999999999999999999997 456666545443321 11110 000000
Q ss_pred -cCccc------H--------HHHHHHHHHhhhcccCC---------cceE--EEecCce---echHHHHHHHHHHHH--
Q 008503 131 -LDYGQ------L--------KLVFHALEERKQAKDRS---------LKGA--VVYYDGQ---MNDSRLNVGLALTAA-- 179 (563)
Q Consensus 131 -~~~~~------~--------~~~~~~l~~~~~~~~~~---------~~~~--~~~~~~~---~~~~~l~~~l~~~a~-- 179 (563)
..... . ....+++.+.+...... ..+. ..+.... .....++..|.+.+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~s~e~i~wL~~~Gv~f~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~G~~~~~~l~~~~~~~ 161 (549)
T PRK12834 82 FDRPEDHWPRQWAEAYVDFAAGEKRSWLHSLGLRFFPVVGWAERGGGDAGGHGNSVPRFHITWGTGPGVVEPFERRVREA 161 (549)
T ss_pred CCCccccchHHHHHHHHHhCCHHHHHHHHHcCCeeEecCCccccCCcccCCcccccCceecCCCCcHHHHHHHHHHHHHH
Confidence 00000 0 11122333322211000 0000 0000000 012345566655543
Q ss_pred --HCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCC-------------CcEEEEEeCeEEEccCcChhh
Q 008503 180 --LAGAAVLNHAEVISLIKDEASNRIIGARIRNNLS-------------GKEFDTYAKVVVNAAGPFCDS 234 (563)
Q Consensus 180 --~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~-------------g~~~~i~A~~VI~AtG~~s~~ 234 (563)
+.|+++++++++++|+.++ ++|+||++.+..+ +....|.||.||+|||.|+..
T Consensus 162 ~~~~gv~i~~~t~~~~Li~~~--g~V~Gv~~~~~~~~~~~~~~~~~~~~~~~~~i~AkaVILATGGf~~n 229 (549)
T PRK12834 162 AARGLVRFRFRHRVDELVVTD--GAVTGVRGTVLEPSDAERGEASSREVVGEFELRAQAVIVTSGGIGGN 229 (549)
T ss_pred HHhCCceEEecCEeeEEEEeC--CEEEEEEEEecccccccccccccccccceEEEecCEEEEeCCCcccC
Confidence 3369999999999999864 7999998743111 123578999999999999864
No 107
>PRK08071 L-aspartate oxidase; Provisional
Probab=99.31 E-value=4.9e-11 Score=129.12 Aligned_cols=158 Identities=22% Similarity=0.252 Sum_probs=98.0
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccch---h----hHHHHhhc---cCc-ccHH--
Q 008503 71 PLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGV---R----YLEKAVFN---LDY-GQLK-- 137 (563)
Q Consensus 71 ~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~---~----~~~~~~~~---~~~-~~~~-- 137 (563)
++||||||+|++|+++|++|++ |.+|+||||.+..+|+|..+.|.+.... . ++...... +.. .-.+
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~g~~~~d~~~v~~~ 81 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRNSNSHLAQGGIAAAVATYDSPNDHFEDTLVAGCHHNNERAVRYL 81 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCCCCchhcCccceecccCCCCHHHHHHHHHHhccCcCCHHHHHHH
Confidence 5899999999999999999987 9999999999876666654444332211 0 11111100 000 0011
Q ss_pred -----HHHHHHHHhhhcccCCcce--------EE-----EecCceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCC
Q 008503 138 -----LVFHALEERKQAKDRSLKG--------AV-----VYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEA 199 (563)
Q Consensus 138 -----~~~~~l~~~~~~~~~~~~~--------~~-----~~~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~ 199 (563)
...+.+.+.+........+ +. .+..+...+..+...|.+.+. .|+++++++.|++|..++
T Consensus 82 ~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~gd~~g~~i~~~L~~~~~-~gV~i~~~~~v~~Li~~~- 159 (510)
T PRK08071 82 VEEGPKEIQELIENGMPFDGDETGPLHLGKEGAHRKRRILHAGGDATGKNLLEHLLQELV-PHVTVVEQEMVIDLIIEN- 159 (510)
T ss_pred HHHHHHHHHHHHHcCCccccCCCCceeeccCcCccCCeEEecCCCCcHHHHHHHHHHHHh-cCCEEEECeEhhheeecC-
Confidence 1122333332221100000 00 011112234567777777665 699999999999998764
Q ss_pred CCcEEEEEEEECCCCcEEEEEeCeEEEccCcChh
Q 008503 200 SNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 233 (563)
Q Consensus 200 ~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~~s~ 233 (563)
++|.||.+.+ .+++...+.|+.||+|||.++.
T Consensus 160 -g~v~Gv~~~~-~~g~~~~i~Ak~VVlATGG~~~ 191 (510)
T PRK08071 160 -GRCIGVLTKD-SEGKLKRYYADYVVLASGGCGG 191 (510)
T ss_pred -CEEEEEEEEE-CCCcEEEEEcCeEEEecCCCcc
Confidence 7899998876 4666567999999999999875
No 108
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=99.31 E-value=7.1e-11 Score=129.48 Aligned_cols=163 Identities=20% Similarity=0.165 Sum_probs=100.6
Q ss_pred CCccEEEECCchHHHHHHHHHHHC--CCcEEEEeccCCCCCCccCCCCcccc--ch-hhHHHHhhcc----C-cccHH--
Q 008503 70 NPLDILVIGGGATGCGVALDAATR--GLRVGLVEREDFSSGTSSRSTKLIHG--GV-RYLEKAVFNL----D-YGQLK-- 137 (563)
Q Consensus 70 ~~~DVvIIGaGiaG~~~A~~la~~--G~~V~llEk~~~~~g~s~~~~~~~~~--g~-~~~~~~~~~~----~-~~~~~-- 137 (563)
.++||||||+|++|+++|+.+++. |++|+||||....++.|..+.|.+.. +. ...+....+. . ..+..
T Consensus 2 ~~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~~s~~a~Gg~~~~~~~~ds~e~~~~dt~~~g~~~~d~~lv 81 (580)
T TIGR01176 2 AQHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSHTVAAEGGSAAVTGDDDSLDEHFHDTVSGGDWLCEQDVV 81 (580)
T ss_pred cceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCchhcCCchhhhcCCCCCHHHHHHHHHHhcCCcCcHHHH
Confidence 468999999999999999999987 68999999997666655444443321 11 1111111000 0 00111
Q ss_pred --------HHHHHHHHhhhccc---CC-c----ceEEEe----cCceechHHHHHHHHHHHHH-CCCEEEcCcEEEEEEE
Q 008503 138 --------LVFHALEERKQAKD---RS-L----KGAVVY----YDGQMNDSRLNVGLALTAAL-AGAAVLNHAEVISLIK 196 (563)
Q Consensus 138 --------~~~~~l~~~~~~~~---~~-~----~~~~~~----~~~~~~~~~l~~~l~~~a~~-~G~~i~~~~~v~~l~~ 196 (563)
...++|.+.+.... ++ + .++..+ +........+...|.+.+.+ .|++++.++.+++|..
T Consensus 82 ~~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~R~~~~~~~~G~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~ 161 (580)
T TIGR01176 82 EYFVAEAPKEMVQLEHWGCPWSRKPDGRVNVRRFGGMKKERTWFAADKTGFHMLHTLFQTSLTYPQIMRYDEWFVTDLLV 161 (580)
T ss_pred HHHHHHhHHHHHHHHHcCCccEecCCCceeeeccCCccCCeeeecCCCCHHHHHHHHHHHHHhcCCCEEEeCeEEEEEEe
Confidence 11233333332210 10 0 011000 00001234577788877766 4899999999999998
Q ss_pred cCCCCcEEEEEEEECCCCcEEEEEeCeEEEccCcChhh
Q 008503 197 DEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDS 234 (563)
Q Consensus 197 ~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~~s~~ 234 (563)
++ ++|.||.+.+..+++...+.|+.||+|||.++..
T Consensus 162 ~~--g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~ 197 (580)
T TIGR01176 162 DD--GRVCGLVAIEMAEGRLVTILADAVVLATGGAGRV 197 (580)
T ss_pred eC--CEEEEEEEEEcCCCcEEEEecCEEEEcCCCCccc
Confidence 64 7999998866456766789999999999998853
No 109
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=99.30 E-value=6.5e-11 Score=127.79 Aligned_cols=159 Identities=19% Similarity=0.224 Sum_probs=99.2
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccch-------hhHHHHhhcc-CcccHHH----
Q 008503 71 PLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGV-------RYLEKAVFNL-DYGQLKL---- 138 (563)
Q Consensus 71 ~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~-------~~~~~~~~~~-~~~~~~~---- 138 (563)
++||||||+|++|+++|+.|++.|. |+||||.+...|+|..+.|.+.... .++......- ...+...
T Consensus 2 ~~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~ 80 (488)
T TIGR00551 2 SCDVVVIGSGAAGLSAALALADQGR-VIVLSKAPVTEGNSFYAQGGIAAVLAETDSIDSHVEDTLAAGAGICDREAVEFV 80 (488)
T ss_pred CccEEEECccHHHHHHHHHHHhCCC-EEEEEccCCCCCcchhcCcCeeeeecCCCCHHHHHHHHHHhcCCcCCHHHHHHH
Confidence 4799999999999999999999998 9999999766666655544332111 0111111000 0001111
Q ss_pred ------HHHHHHHhhhcccCC----c----ceEE----EecCceechHHHHHHHHHHHHH-CCCEEEcCcEEEEEEEcCC
Q 008503 139 ------VFHALEERKQAKDRS----L----KGAV----VYYDGQMNDSRLNVGLALTAAL-AGAAVLNHAEVISLIKDEA 199 (563)
Q Consensus 139 ------~~~~l~~~~~~~~~~----~----~~~~----~~~~~~~~~~~l~~~l~~~a~~-~G~~i~~~~~v~~l~~~~~ 199 (563)
..+++.+.+...... + .++. ..+.+......+...|.+.+++ .|+++++++.|++|..++
T Consensus 81 ~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~- 159 (488)
T TIGR00551 81 VSDARSAVQWLVDQGVLFDRHEQGSYALTREGGHSYRRILHAADATGREVITTLVKKALNHPNIRIIEGENALDLLIET- 159 (488)
T ss_pred HHhHHHHHHHHHHcCCcceeCCCCCccccCCCCcCCCeEEEeCCCCHHHHHHHHHHHHHhcCCcEEEECeEeeeeeccC-
Confidence 123333332221100 0 0000 0011112345778888888887 699999999999998764
Q ss_pred CCcEEEEEEEECCCCcEEEEEeCeEEEccCcChhh
Q 008503 200 SNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDS 234 (563)
Q Consensus 200 ~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~~s~~ 234 (563)
++|.||.+.+. +....+.|+.||+|||.|+..
T Consensus 160 -g~v~Gv~~~~~--~~~~~i~A~~VVlAtGG~~~~ 191 (488)
T TIGR00551 160 -GRVVGVWVWNR--ETVETCHADAVVLATGGAGKL 191 (488)
T ss_pred -CEEEEEEEEEC--CcEEEEEcCEEEECCCcccCC
Confidence 68999988752 444578999999999999864
No 110
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=99.30 E-value=7.5e-11 Score=129.75 Aligned_cols=64 Identities=30% Similarity=0.403 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEe-CeEEEccCcChhhhh
Q 008503 169 RLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYA-KVVVNAAGPFCDSVR 236 (563)
Q Consensus 169 ~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A-~~VI~AtG~~s~~l~ 236 (563)
.+...|.+.+++.|++|+++++|++|..++ ++|+||++.+ .++ ...+.+ +.||+|||.|+.+..
T Consensus 215 ~l~~~L~~~~~~~Gv~i~~~~~v~~l~~~~--g~V~GV~~~~-~~~-~~~i~a~k~VVlAtGg~~~n~~ 279 (574)
T PRK12842 215 ALAARLAKSALDLGIPILTGTPARELLTEG--GRVVGARVID-AGG-ERRITARRGVVLACGGFSHDLA 279 (574)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEeeC--CEEEEEEEEc-CCc-eEEEEeCCEEEEcCCCccchHH
Confidence 355667778889999999999999998874 7899998875 233 356888 589999999986543
No 111
>PRK06847 hypothetical protein; Provisional
Probab=99.30 E-value=4.5e-10 Score=117.37 Aligned_cols=151 Identities=22% Similarity=0.236 Sum_probs=92.9
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhhhc-
Q 008503 71 PLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQA- 149 (563)
Q Consensus 71 ~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 149 (563)
..||+|||||++|+++|+.|++.|++|+|+|+.+... ..+....+...+.+.+.+. . +.+.+.+....
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~-~~g~g~~l~~~~~~~l~~~----g------l~~~~~~~~~~~ 72 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWR-VYGAGITLQGNALRALREL----G------VLDECLEAGFGF 72 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCc-cCCceeeecHHHHHHHHHc----C------CHHHHHHhCCCc
Confidence 5799999999999999999999999999999985211 1122122222333333321 0 01111111100
Q ss_pred ------ccCC-cceEE---------EecCceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCC
Q 008503 150 ------KDRS-LKGAV---------VYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLS 213 (563)
Q Consensus 150 ------~~~~-~~~~~---------~~~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~ 213 (563)
...+ ....+ .+....++...+...|.+.+.+.|++++++++|+++..++ +.+ .|.+ .+
T Consensus 73 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~--~~~-~v~~---~~ 146 (375)
T PRK06847 73 DGVDLFDPDGTLLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDD--DGV-TVTF---SD 146 (375)
T ss_pred cceEEECCCCCEEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcC--CEE-EEEE---cC
Confidence 0000 00000 0112345667888888888888999999999999998765 233 3433 23
Q ss_pred CcEEEEEeCeEEEccCcChhhhhhhhc
Q 008503 214 GKEFDTYAKVVVNAAGPFCDSVRKLAD 240 (563)
Q Consensus 214 g~~~~i~A~~VI~AtG~~s~~l~~~~g 240 (563)
|. ++.+|.||.|+|.+|.....+.+
T Consensus 147 g~--~~~ad~vI~AdG~~s~~r~~l~~ 171 (375)
T PRK06847 147 GT--TGRYDLVVGADGLYSKVRSLVFP 171 (375)
T ss_pred CC--EEEcCEEEECcCCCcchhhHhcC
Confidence 43 68999999999999975544434
No 112
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=99.29 E-value=5e-11 Score=129.35 Aligned_cols=62 Identities=23% Similarity=0.307 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHH-CCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeC-eEEEccCcChhh
Q 008503 169 RLNVGLALTAAL-AGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAK-VVVNAAGPFCDS 234 (563)
Q Consensus 169 ~l~~~l~~~a~~-~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~-~VI~AtG~~s~~ 234 (563)
.+...+.+.+.+ .|++++++++|++|+.++ ++|.||++.. +++...|.|+ .||+|||.|..+
T Consensus 174 ~l~~~l~~~~~~~~gv~i~~~t~~~~Li~~~--g~v~Gv~~~~--~g~~~~i~A~k~VIlAtGG~~~n 237 (513)
T PRK12837 174 ALIGRFLAALARFPNARLRLNTPLVELVVED--GRVVGAVVER--GGERRRVRARRGVLLAAGGFEQN 237 (513)
T ss_pred HHHHHHHHHHHhCCCCEEEeCCEEEEEEecC--CEEEEEEEEE--CCcEEEEEeCceEEEeCCCccCC
Confidence 455666666655 499999999999998864 7999998863 5666789995 899999998654
No 113
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.29 E-value=6.6e-11 Score=129.50 Aligned_cols=60 Identities=28% Similarity=0.383 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeC-eEEEccCcChh
Q 008503 170 LNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAK-VVVNAAGPFCD 233 (563)
Q Consensus 170 l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~-~VI~AtG~~s~ 233 (563)
+...|.+.+++.|++++++++|++|..++ ++|.||.+.. +++...|.|+ .||+|||.+..
T Consensus 210 ~~~~L~~~~~~~gv~v~~~t~v~~l~~~~--g~v~Gv~~~~--~g~~~~i~A~~~VIlAtGG~~~ 270 (557)
T PRK07843 210 LAAGLRIGLQRAGVPVLLNTPLTDLYVED--GRVTGVHAAE--SGEPQLIRARRGVILASGGFEH 270 (557)
T ss_pred HHHHHHHHHHcCCCEEEeCCEEEEEEEeC--CEEEEEEEEe--CCcEEEEEeceeEEEccCCcCc
Confidence 45556677778899999999999999864 7899998863 4556789996 69999999875
No 114
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=99.28 E-value=3.6e-12 Score=135.19 Aligned_cols=156 Identities=26% Similarity=0.378 Sum_probs=35.0
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhhhcccC
Q 008503 73 DILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQAKDR 152 (563)
Q Consensus 73 DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 152 (563)
||||||||++|++||+.+++.|++|+|||+.+..+|...........+...... ...-+.+.+.++......
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~--------~~~gi~~e~~~~~~~~~~ 72 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQ--------VIGGIFREFLNRLRARGG 72 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHH--------HHHHHHHHHHHST-----
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhhc--------cCCCHHHHHHHHHhhhcc
Confidence 899999999999999999999999999999986655433222111111110000 001111111111110000
Q ss_pred C-cceEEEec-CceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccCc
Q 008503 153 S-LKGAVVYY-DGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGP 230 (563)
Q Consensus 153 ~-~~~~~~~~-~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~ 230 (563)
. ......+. ...++|..+...+.+.+.+.|+++++++.|.++..++ ++|++|++.+. .| ..+|+|+.||.|||.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~--~~i~~V~~~~~-~g-~~~i~A~~~IDaTG~ 148 (428)
T PF12831_consen 73 YPQEDRYGWVSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDG--GRITGVIVETK-SG-RKEIRAKVFIDATGD 148 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccc--ccccccccccc-cc-ccccccccccccccc
Confidence 0 00000000 1346676666677777788999999999999999876 68999998763 34 478999999999995
Q ss_pred ChhhhhhhhcCC
Q 008503 231 FCDSVRKLADQN 242 (563)
Q Consensus 231 ~s~~l~~~~g~~ 242 (563)
+ .+..+.|.+
T Consensus 149 -g-~l~~~aG~~ 158 (428)
T PF12831_consen 149 -G-DLAALAGAP 158 (428)
T ss_dssp ------------
T ss_pred -c-ccccccccc
Confidence 3 455555543
No 115
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=99.28 E-value=1.8e-10 Score=113.57 Aligned_cols=160 Identities=23% Similarity=0.351 Sum_probs=98.4
Q ss_pred CCCccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCC-CC-ccccchhhHHHHhhccCcccHHHHHHHHHHh
Q 008503 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRS-TK-LIHGGVRYLEKAVFNLDYGQLKLVFHALEER 146 (563)
Q Consensus 69 ~~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~-~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~ 146 (563)
+..+||+|||||++|++.|+.|++.|-+|.||||+---. -|- +- +..+|+..+.+...+ .-.+.+..+
T Consensus 43 ~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl~EP---dRivGEllQPGG~~~L~~LGl~-------Dcve~IDAQ 112 (509)
T KOG1298|consen 43 DGAADVIIVGAGVAGSALAYALAKDGRRVHVIERDLSEP---DRIVGELLQPGGYLALSKLGLE-------DCVEGIDAQ 112 (509)
T ss_pred CCcccEEEECCcchHHHHHHHHhhCCcEEEEEecccccc---hHHHHHhcCcchhHHHHHhCHH-------HHhhcccce
Confidence 678999999999999999999999999999999982100 000 11 123444444432110 001111100
Q ss_pred hhc------ccCCc------c-eEEEecCceechHHHHHHHHHHHHH-CCCEEEcCcEEEEEEEcCCCCcEEEEEEEECC
Q 008503 147 KQA------KDRSL------K-GAVVYYDGQMNDSRLNVGLALTAAL-AGAAVLNHAEVISLIKDEASNRIIGARIRNNL 212 (563)
Q Consensus 147 ~~~------~~~~~------~-~~~~~~~~~~~~~~l~~~l~~~a~~-~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~ 212 (563)
... ..... . -...+..-.++..+++..|.+.|.. .++++..+ .|.++..++ |.|.||++++..
T Consensus 113 ~v~Gy~ifk~gk~v~~pyP~~~f~~d~~GrsFhnGRFvq~lR~ka~slpNV~~eeG-tV~sLlee~--gvvkGV~yk~k~ 189 (509)
T KOG1298|consen 113 RVTGYAIFKDGKEVDLPYPLKNFPSDPSGRSFHNGRFVQRLRKKAASLPNVRLEEG-TVKSLLEEE--GVVKGVTYKNKE 189 (509)
T ss_pred EeeeeEEEeCCceeeccCCCcCCCCCcccceeeccHHHHHHHHHHhcCCCeEEeee-eHHHHHhcc--CeEEeEEEecCC
Confidence 000 00000 0 0001112234556888888887754 57887665 677887776 789999998844
Q ss_pred CCcEEEEEeCeEEEccCcChhhhhhhhcCC
Q 008503 213 SGKEFDTYAKVVVNAAGPFCDSVRKLADQN 242 (563)
Q Consensus 213 ~g~~~~i~A~~VI~AtG~~s~~l~~~~g~~ 242 (563)
++..+..|...|+|+|.||+..+.+....
T Consensus 190 -gee~~~~ApLTvVCDGcfSnlRrsL~~~~ 218 (509)
T KOG1298|consen 190 -GEEVEAFAPLTVVCDGCFSNLRRSLCDPK 218 (509)
T ss_pred -CceEEEecceEEEecchhHHHHHHhcCCc
Confidence 44578889999999999997655554433
No 116
>PRK09077 L-aspartate oxidase; Provisional
Probab=99.28 E-value=1.2e-10 Score=127.03 Aligned_cols=165 Identities=22% Similarity=0.283 Sum_probs=101.3
Q ss_pred CCCccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccch-------hhHHHHhh---ccCccc-HH
Q 008503 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGV-------RYLEKAVF---NLDYGQ-LK 137 (563)
Q Consensus 69 ~~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~-------~~~~~~~~---~~~~~~-~~ 137 (563)
+.++||||||+|++|+++|+.|++. .+|+||||....+|+|..+.|.+.... .++..... .+...+ .+
T Consensus 6 ~~~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~~g~t~~a~Ggi~~~~~~~ds~e~~~~d~~~~g~~~~d~~~v~ 84 (536)
T PRK09077 6 EHQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEGSTFYAQGGIAAVLDETDSIESHVEDTLIAGAGLCDEDAVR 84 (536)
T ss_pred cccCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCCCCChhhccCCeeeccCCCccHHHHHHHHHHHccCCCCHHHHH
Confidence 5679999999999999999999986 899999999876676665555432211 11111111 011000 11
Q ss_pred -------HHHHHHHHhhhccc--CCcce--EEE--ecCce-----e-----chHHHHHHHHHHHHHC-CCEEEcCcEEEE
Q 008503 138 -------LVFHALEERKQAKD--RSLKG--AVV--YYDGQ-----M-----NDSRLNVGLALTAALA-GAAVLNHAEVIS 193 (563)
Q Consensus 138 -------~~~~~l~~~~~~~~--~~~~~--~~~--~~~~~-----~-----~~~~l~~~l~~~a~~~-G~~i~~~~~v~~ 193 (563)
...+.+.+.+.... ....+ .+. ...+. + ....+...|.+.+.+. |+++++++.|++
T Consensus 85 ~~~~~~~~~i~~L~~~Gv~f~~~~~~~g~~~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~~~I~v~~~~~v~~ 164 (536)
T PRK09077 85 FIAENAREAVQWLIDQGVPFTTDEQANGEEGYHLTREGGHSHRRILHAADATGKAVQTTLVERARNHPNITVLERHNAID 164 (536)
T ss_pred HHHHHHHHHHHHHHHcCCccccCCCCCccccccccCCCCccCCceEecCCCCHHHHHHHHHHHHHhCCCcEEEeeEEeee
Confidence 11233333332110 00000 010 01110 1 1235666777777664 899999999999
Q ss_pred EEEcC----CCCcEEEEEEEECCCCcEEEEEeCeEEEccCcChhh
Q 008503 194 LIKDE----ASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDS 234 (563)
Q Consensus 194 l~~~~----~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~~s~~ 234 (563)
+..++ ++++|.||.+.+..+++...|.|+.||+|||.++..
T Consensus 165 Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~~~ 209 (536)
T PRK09077 165 LITSDKLGLPGRRVVGAYVLNRNKERVETIRAKFVVLATGGASKV 209 (536)
T ss_pred eeecccccCCCCEEEEEEEEECCCCcEEEEecCeEEECCCCCCCC
Confidence 98753 126899999877556766789999999999998753
No 117
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=99.27 E-value=4.6e-10 Score=123.18 Aligned_cols=158 Identities=15% Similarity=0.178 Sum_probs=93.8
Q ss_pred CCCccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhhh
Q 008503 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQ 148 (563)
Q Consensus 69 ~~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 148 (563)
+..+||+|||||++|+++|+.|+++|++|+||||.+... ..++..++...+.+.+++. .. .+.+.+.+.
T Consensus 21 ~~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~-~~~ra~~l~~~~~~~l~~l----Gl------~~~l~~~~~ 89 (547)
T PRK08132 21 PARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLS-TGSRAICFAKRSLEIFDRL----GC------GERMVDKGV 89 (547)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCC-CCCeEEEEcHHHHHHHHHc----CC------cHHHHhhCc
Confidence 356899999999999999999999999999999985211 1122222222333333321 10 111111111
Q ss_pred c-------ccCCcceEEEe--c-------CceechHHHHHHHHHHHHHC-CCEEEcCcEEEEEEEcCCCCcEEEEEEEEC
Q 008503 149 A-------KDRSLKGAVVY--Y-------DGQMNDSRLNVGLALTAALA-GAAVLNHAEVISLIKDEASNRIIGARIRNN 211 (563)
Q Consensus 149 ~-------~~~~~~~~~~~--~-------~~~~~~~~l~~~l~~~a~~~-G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~ 211 (563)
. ........+.. . ...+....+...|.+.+.+. |++++++++|+++..+++ .+ .+.+.+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~--~v-~v~~~~- 165 (547)
T PRK08132 90 SWNVGKVFLRDEEVYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQHDD--GV-TLTVET- 165 (547)
T ss_pred eeeceeEEeCCCeEEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEcCC--EE-EEEEEC-
Confidence 0 00000000000 0 01133445666777777765 799999999999988753 33 244432
Q ss_pred CCCcEEEEEeCeEEEccCcChhhhhhhhcCCC
Q 008503 212 LSGKEFDTYAKVVVNAAGPFCDSVRKLADQNV 243 (563)
Q Consensus 212 ~~g~~~~i~A~~VI~AtG~~s~~l~~~~g~~~ 243 (563)
.++ ..+++||+||.|+|.+|. +++.+|.+.
T Consensus 166 ~~g-~~~i~ad~vVgADG~~S~-vR~~lg~~~ 195 (547)
T PRK08132 166 PDG-PYTLEADWVIACDGARSP-LREMLGLEF 195 (547)
T ss_pred CCC-cEEEEeCEEEECCCCCcH-HHHHcCCCC
Confidence 223 247999999999999986 677777653
No 118
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.27 E-value=2.3e-10 Score=119.57 Aligned_cols=151 Identities=15% Similarity=0.189 Sum_probs=95.0
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCC---ccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhhh
Q 008503 72 LDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGT---SSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQ 148 (563)
Q Consensus 72 ~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~---s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 148 (563)
+||+|||||++|+++|+.|++.|++|+|+|+.+..... .++..++.+.+.+++++.. +++.+.+...
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG----------l~~~l~~~~~ 71 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSID----------IWEELEKFVA 71 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHCC----------cHHHHHhhcC
Confidence 69999999999999999999999999999997532111 1333344445555554320 1111111110
Q ss_pred c-------ccCCcc-eEEE-----ecCceechHHHHHHHHHHHHHCC-CEEEcCcEEEEEEEcCCCCcEEEEEEEECCCC
Q 008503 149 A-------KDRSLK-GAVV-----YYDGQMNDSRLNVGLALTAALAG-AAVLNHAEVISLIKDEASNRIIGARIRNNLSG 214 (563)
Q Consensus 149 ~-------~~~~~~-~~~~-----~~~~~~~~~~l~~~l~~~a~~~G-~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g 214 (563)
. ...... ..+. .....+....+...|.+.+.+.+ ++++++++++++..+++ .+ .|.+ ++
T Consensus 72 ~~~~~~~~~~~g~~~~~~~~~~~~~~g~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~--~v-~v~~----~~ 144 (374)
T PRK06617 72 EMQDIYVVDNKASEILDLRNDADAVLGYVVKNSDFKKILLSKITNNPLITLIDNNQYQEVISHND--YS-IIKF----DD 144 (374)
T ss_pred CCcEEEEEECCCceEEEecCCCCCCcEEEEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEEcCC--eE-EEEE----cC
Confidence 0 000000 0000 01123566788888888888765 89999999999987753 33 2433 22
Q ss_pred cEEEEEeCeEEEccCcChhhhhhhhcCC
Q 008503 215 KEFDTYAKVVVNAAGPFCDSVRKLADQN 242 (563)
Q Consensus 215 ~~~~i~A~~VI~AtG~~s~~l~~~~g~~ 242 (563)
. +++||.||.|+|.+|. +++.++..
T Consensus 145 ~--~~~adlvIgADG~~S~-vR~~l~~~ 169 (374)
T PRK06617 145 K--QIKCNLLIICDGANSK-VRSHYFAN 169 (374)
T ss_pred C--EEeeCEEEEeCCCCch-hHHhcCCC
Confidence 2 7999999999999995 55555544
No 119
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.26 E-value=8.2e-11 Score=117.93 Aligned_cols=143 Identities=22% Similarity=0.236 Sum_probs=89.0
Q ss_pred CCccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCC------CCCccCCCCccccc------------hhhHHHHhhcc
Q 008503 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFS------SGTSSRSTKLIHGG------------VRYLEKAVFNL 131 (563)
Q Consensus 70 ~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~------~g~s~~~~~~~~~g------------~~~~~~~~~~~ 131 (563)
..+||+|||||++|++||..++++|.+|+|||+++-. +|...=| +-|.. -+++...+..+
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN--~Tn~~~~~~~ls~~p~~~~fl~sal~~f 79 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCN--FTNSEAPDEFLSRNPGNGHFLKSALARF 79 (408)
T ss_pred CcceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCcc--ccccccHHHHHHhCCCcchHHHHHHHhC
Confidence 4689999999999999999999999999999998621 1111111 01111 01111111111
Q ss_pred CcccHHHHHHHHHHhhhcccCCcceEEEecCceech-----HHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEE
Q 008503 132 DYGQLKLVFHALEERKQAKDRSLKGAVVYYDGQMND-----SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGA 206 (563)
Q Consensus 132 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv 206 (563)
... .+...+...+.. -..-..|++-| ..++.+|+..+++.||+++++++|.++..+++ ...+
T Consensus 80 t~~---d~i~~~e~~Gi~-------~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~---~f~l 146 (408)
T COG2081 80 TPE---DFIDWVEGLGIA-------LKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDS---GFRL 146 (408)
T ss_pred CHH---HHHHHHHhcCCe-------eEEccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCc---eEEE
Confidence 111 122223222221 11223344433 46788999999999999999999999998852 2223
Q ss_pred EEEECCCCcEEEEEeCeEEEccCcCh
Q 008503 207 RIRNNLSGKEFDTYAKVVVNAAGPFC 232 (563)
Q Consensus 207 ~~~d~~~g~~~~i~A~~VI~AtG~~s 232 (563)
.. .++. +|+|+.+|+|+|.-|
T Consensus 147 ~t---~~g~--~i~~d~lilAtGG~S 167 (408)
T COG2081 147 DT---SSGE--TVKCDSLILATGGKS 167 (408)
T ss_pred Ec---CCCC--EEEccEEEEecCCcC
Confidence 22 2332 799999999999644
No 120
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.26 E-value=8.1e-11 Score=128.73 Aligned_cols=62 Identities=24% Similarity=0.348 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEe-CeEEEccCcChhh
Q 008503 169 RLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYA-KVVVNAAGPFCDS 234 (563)
Q Consensus 169 ~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A-~~VI~AtG~~s~~ 234 (563)
.+...|.+.+++.|++++++++|++|+.++ ++|+||++.. +++...+.| +.||+|||.++.+
T Consensus 209 ~l~~~l~~~~~~~gv~i~~~~~v~~Li~~~--g~v~Gv~~~~--~g~~~~i~A~~aVIlAtGG~~~N 271 (557)
T PRK12844 209 ALIGRMLEAALAAGVPLWTNTPLTELIVED--GRVVGVVVVR--DGREVLIRARRGVLLASGGFGHN 271 (557)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEeC--CEEEEEEEEE--CCeEEEEEecceEEEecCCccCC
Confidence 455667788889999999999999999874 7999998863 455678999 5899999999864
No 121
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=99.26 E-value=1.5e-09 Score=114.13 Aligned_cols=156 Identities=15% Similarity=0.135 Sum_probs=94.9
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCC-CCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhhhc
Q 008503 71 PLDILVIGGGATGCGVALDAATRGLRVGLVEREDFS-SGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQA 149 (563)
Q Consensus 71 ~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~-~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 149 (563)
++||+|||||++|+++|+.|++.|++|+|+||.+.. .....+...+...+.+.+++.. +.+.+.+.+..
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~lG----------l~~~l~~~~~~ 71 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREAG----------VGERMDREGLV 71 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeEECHhHHHHHHHcC----------ChHHHHhcCCc
Confidence 479999999999999999999999999999998631 1111122223334445554320 11222211111
Q ss_pred ------ccCCcceEEEec------C-ceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcE
Q 008503 150 ------KDRSLKGAVVYY------D-GQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKE 216 (563)
Q Consensus 150 ------~~~~~~~~~~~~------~-~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~ 216 (563)
...+....+.+. . ..+....+...|++.+.+.|++++++++|+++...++ .. ..|.+. .+|+.
T Consensus 72 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~-~~-~~V~~~--~~G~~ 147 (392)
T PRK08243 72 HDGIELRFDGRRHRIDLTELTGGRAVTVYGQTEVTRDLMAARLAAGGPIRFEASDVALHDFDS-DR-PYVTYE--KDGEE 147 (392)
T ss_pred cCcEEEEECCEEEEeccccccCCceEEEeCcHHHHHHHHHHHHhCCCeEEEeeeEEEEEecCC-Cc-eEEEEE--cCCeE
Confidence 000000001100 0 1123456677788888889999999999999976222 22 345543 35655
Q ss_pred EEEEeCeEEEccCcChhhhhhhhcC
Q 008503 217 FDTYAKVVVNAAGPFCDSVRKLADQ 241 (563)
Q Consensus 217 ~~i~A~~VI~AtG~~s~~l~~~~g~ 241 (563)
.+++||+||.|+|.+|. +++..+.
T Consensus 148 ~~i~ad~vVgADG~~S~-vR~~~~~ 171 (392)
T PRK08243 148 HRLDCDFIAGCDGFHGV-SRASIPA 171 (392)
T ss_pred EEEEeCEEEECCCCCCc-hhhhcCc
Confidence 68999999999999984 5665554
No 122
>PRK06996 hypothetical protein; Provisional
Probab=99.26 E-value=1.3e-10 Score=122.36 Aligned_cols=164 Identities=19% Similarity=0.200 Sum_probs=95.6
Q ss_pred cCCCCccEEEECCchHHHHHHHHHHHCC----CcEEEEeccCCCC-CCccCCCCccccchhhHHHHhhccCcccHHHHHH
Q 008503 67 NNSNPLDILVIGGGATGCGVALDAATRG----LRVGLVEREDFSS-GTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFH 141 (563)
Q Consensus 67 ~~~~~~DVvIIGaGiaG~~~A~~la~~G----~~V~llEk~~~~~-g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 141 (563)
|.+..+||+|||||++|+++|+.|+++| ++|+|+|+.+... ....+...+.+.....+++... ++ .. ..
T Consensus 7 ~~~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~-~~--~~---~~ 80 (398)
T PRK06996 7 MAAPDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGA-WP--AD---AT 80 (398)
T ss_pred ccCCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCC-ch--hc---CC
Confidence 3467799999999999999999999987 5799999985322 1112233333444444443210 00 00 00
Q ss_pred HHHHhhhcccCCcceEE--------E-ecCceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECC
Q 008503 142 ALEERKQAKDRSLKGAV--------V-YYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNL 212 (563)
Q Consensus 142 ~l~~~~~~~~~~~~~~~--------~-~~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~ 212 (563)
.+.. .........+.. . +....++...+...|.+.+.+.|++++++++++++..+++ .| .+.+.+ .
T Consensus 81 ~~~~-~~~~~~~~~g~~~~~~~~~~~~~~g~~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~--~v-~v~~~~-~ 155 (398)
T PRK06996 81 PIEH-IHVSQRGHFGRTLIDRDDHDVPALGYVVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQDAD--GV-TLALGT-P 155 (398)
T ss_pred cccE-EEEecCCCCceEEecccccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeecCC--eE-EEEECC-C
Confidence 0000 000000000000 0 1122456678888999999999999999999999977653 22 233321 1
Q ss_pred CCcEEEEEeCeEEEccCcChhhhhhhhcCC
Q 008503 213 SGKEFDTYAKVVVNAAGPFCDSVRKLADQN 242 (563)
Q Consensus 213 ~g~~~~i~A~~VI~AtG~~s~~l~~~~g~~ 242 (563)
++ ..+++|++||.|+|..+..+++..+..
T Consensus 156 ~g-~~~i~a~lvIgADG~~~s~~r~~~~~~ 184 (398)
T PRK06996 156 QG-ARTLRARIAVQAEGGLFHDQKADAGDS 184 (398)
T ss_pred Cc-ceEEeeeEEEECCCCCchHHHHHcCCC
Confidence 22 247999999999997433344555544
No 123
>PLN02661 Putative thiazole synthesis
Probab=99.25 E-value=1.8e-10 Score=116.04 Aligned_cols=145 Identities=17% Similarity=0.179 Sum_probs=89.1
Q ss_pred CCCCccEEEECCchHHHHHHHHHHHC-CCcEEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHh
Q 008503 68 NSNPLDILVIGGGATGCGVALDAATR-GLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEER 146 (563)
Q Consensus 68 ~~~~~DVvIIGaGiaG~~~A~~la~~-G~~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~ 146 (563)
+..++||+|||||++|+++|+.|++. |++|+||||+...+|..+....++. .+.- .. ...+.+.+.
T Consensus 89 ~~~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~gg~l~~---~~vv--------~~--~a~e~LeEl 155 (357)
T PLN02661 89 TYADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWLGGQLFS---AMVV--------RK--PAHLFLDEL 155 (357)
T ss_pred hcccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccceeeCccccc---cccc--------cc--HHHHHHHHc
Confidence 46789999999999999999999986 8999999998644332221111110 0000 00 011223322
Q ss_pred hhcccCCcceEEEecCceechHHHHHHHHHHHHH-CCCEEEcCcEEEEEEEcCCCCcEEEEEEEE------CCCC---cE
Q 008503 147 KQAKDRSLKGAVVYYDGQMNDSRLNVGLALTAAL-AGAAVLNHAEVISLIKDEASNRIIGARIRN------NLSG---KE 216 (563)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~-~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d------~~~g---~~ 216 (563)
+..... . ..+.. ..+...+...|.+.+.+ .|+++++++.|+++..++ +++.||.+.. ..++ +.
T Consensus 156 GV~fd~-~-dgy~v---v~ha~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~~--grVaGVVvnw~~v~~~~~~~s~~dp 228 (357)
T PLN02661 156 GVPYDE-Q-ENYVV---IKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG--DRVGGVVTNWALVAQNHDTQSCMDP 228 (357)
T ss_pred CCCccc-C-CCeeE---ecchHHHHHHHHHHHHhcCCCEEEeCeEeeeEEecC--CEEEEEEeecchhhhccCCCCccce
Confidence 221110 0 11100 11334556677776654 789999999999999875 6899988631 1111 23
Q ss_pred EEEEeCeEEEccCcCh
Q 008503 217 FDTYAKVVVNAAGPFC 232 (563)
Q Consensus 217 ~~i~A~~VI~AtG~~s 232 (563)
..|+||.||+|||...
T Consensus 229 ~~I~AkaVVlATGh~g 244 (357)
T PLN02661 229 NVMEAKVVVSSCGHDG 244 (357)
T ss_pred eEEECCEEEEcCCCCC
Confidence 4789999999999644
No 124
>PRK09126 hypothetical protein; Provisional
Probab=99.25 E-value=1.4e-10 Score=122.03 Aligned_cols=153 Identities=20% Similarity=0.290 Sum_probs=90.2
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCC----CccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHh
Q 008503 71 PLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSG----TSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEER 146 (563)
Q Consensus 71 ~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g----~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~ 146 (563)
++||+|||||++|+++|+.|+++|++|+|+||.+...- ..++..++.+.+.+.+++. .. .+.+.+.
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~l----Gl------~~~~~~~ 72 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRL----GA------WDRIPED 72 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHC----CC------hhhhccc
Confidence 58999999999999999999999999999999864211 1122122223344444331 10 1111100
Q ss_pred hh-------cccCCcceEEEec--------Cc-eechHHHHHHHHHHHH-HCCCEEEcCcEEEEEEEcCCCCcEEEEEEE
Q 008503 147 KQ-------AKDRSLKGAVVYY--------DG-QMNDSRLNVGLALTAA-LAGAAVLNHAEVISLIKDEASNRIIGARIR 209 (563)
Q Consensus 147 ~~-------~~~~~~~~~~~~~--------~~-~~~~~~l~~~l~~~a~-~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~ 209 (563)
.. .........+.+. .+ .+....+...+.+.+. ..|++++++++|+++..++ +.+ .|.+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~--~~~-~v~~- 148 (392)
T PRK09126 73 EISPLRDAKVLNGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDD--DGA-QVTL- 148 (392)
T ss_pred cCCccceEEEEcCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcC--CeE-EEEE-
Confidence 00 0000000011110 11 1344556666666654 4699999999999998765 233 3443
Q ss_pred ECCCCcEEEEEeCeEEEccCcChhhhhhhhcCC
Q 008503 210 NNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQN 242 (563)
Q Consensus 210 d~~~g~~~~i~A~~VI~AtG~~s~~l~~~~g~~ 242 (563)
.+| .++.||.||.|+|.+|. +++.++..
T Consensus 149 --~~g--~~~~a~~vI~AdG~~S~-vr~~~g~~ 176 (392)
T PRK09126 149 --ANG--RRLTARLLVAADSRFSA-TRRQLGIG 176 (392)
T ss_pred --cCC--CEEEeCEEEEeCCCCch-hhHhcCCC
Confidence 234 37999999999999885 56666644
No 125
>PRK07512 L-aspartate oxidase; Provisional
Probab=99.25 E-value=1e-10 Score=126.76 Aligned_cols=160 Identities=19% Similarity=0.142 Sum_probs=96.4
Q ss_pred CCCCccEEEECCchHHHHHHHHHHHCCCcEEEEeccCC-CCCCccCCCCccccc--h-h----hHHHHhhccC-cccHH-
Q 008503 68 NSNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDF-SSGTSSRSTKLIHGG--V-R----YLEKAVFNLD-YGQLK- 137 (563)
Q Consensus 68 ~~~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~-~~g~s~~~~~~~~~g--~-~----~~~~~~~~~~-~~~~~- 137 (563)
.+.++||||||+|++|+++|++|+ |.+|+||||.+. .+|+|..+.|.+... . . ++......-. ..+..
T Consensus 6 ~~~~~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~~~~gg~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~~~g~~d~~~ 83 (513)
T PRK07512 6 RILTGRPVIVGGGLAGLMAALKLA--PRPVVVLSPAPLGEGASSAWAQGGIAAALGPDDSPALHAADTLAAGAGLCDPAV 83 (513)
T ss_pred cCCcCCEEEECchHHHHHHHHHhC--cCCEEEEECCCCCCCcchHHhhhccccccCCCCCHHHHHHHHHHhhCCCCCHHH
Confidence 367899999999999999999997 679999999976 344444443333211 1 0 1111111000 00111
Q ss_pred ---------HHHHHHHHhhhccc---CC-cc----eEE-----EecCceechHHHHHHHHHHHHHC-CCEEEcCcEEEEE
Q 008503 138 ---------LVFHALEERKQAKD---RS-LK----GAV-----VYYDGQMNDSRLNVGLALTAALA-GAAVLNHAEVISL 194 (563)
Q Consensus 138 ---------~~~~~l~~~~~~~~---~~-~~----~~~-----~~~~~~~~~~~l~~~l~~~a~~~-G~~i~~~~~v~~l 194 (563)
...+++.+.+.... .. +. ++. .+..+......+...|.+.+.+. |+++++++.|++|
T Consensus 84 v~~~~~~s~~~i~wL~~~Gv~f~~~~~G~~~~~~~~~~~~~r~~~~~g~~~G~~l~~~L~~~~~~~~gV~i~~~~~v~~L 163 (513)
T PRK07512 84 AALITAEAPAAIEDLLRLGVPFDRDADGRLALGLEAAHSRRRIVHVGGDGAGAAIMRALIAAVRATPSITVLEGAEARRL 163 (513)
T ss_pred HHHHHHHHHHHHHHHHHhCCccccCCCCccccccccCccCCcEEEcCCCCCHHHHHHHHHHHHHhCCCCEEEECcChhhe
Confidence 11233433332211 00 00 000 00001112456778888888765 8999999999999
Q ss_pred EEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccCcChh
Q 008503 195 IKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 233 (563)
Q Consensus 195 ~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~~s~ 233 (563)
..++ ++|.||.+.+ ++....+.|+.||+|||.++.
T Consensus 164 i~~~--g~v~Gv~~~~--~~~~~~i~Ak~VVLATGG~~~ 198 (513)
T PRK07512 164 LVDD--GAVAGVLAAT--AGGPVVLPARAVVLATGGIGG 198 (513)
T ss_pred eecC--CEEEEEEEEe--CCeEEEEECCEEEEcCCCCcC
Confidence 8764 7899998864 333357899999999999864
No 126
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=99.25 E-value=2.4e-10 Score=125.24 Aligned_cols=160 Identities=26% Similarity=0.332 Sum_probs=93.1
Q ss_pred cEEEECCchHHHHHHHHHH----HCCCcEEEEeccCCCCCCccCCCCccccchhh--------HHHHhh----c-cCccc
Q 008503 73 DILVIGGGATGCGVALDAA----TRGLRVGLVEREDFSSGTSSRSTKLIHGGVRY--------LEKAVF----N-LDYGQ 135 (563)
Q Consensus 73 DVvIIGaGiaG~~~A~~la----~~G~~V~llEk~~~~~g~s~~~~~~~~~g~~~--------~~~~~~----~-~~~~~ 135 (563)
||||||+|++|++||+.++ +.|++|+||||......++ .+.|+...+..+ .+.... . ....+
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~~~s~s-~A~G~~gi~~~~~~~~g~Ds~e~~~~d~~~~~~gl~d 79 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANLERSGA-VAQGLSAINTYLGTRFGENNAEDYVRYVRTDLMGLVR 79 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCCCCCCc-cccccchhhhhhhcccCCCCHHHHHHHHHHhcCCCCc
Confidence 8999999999999999998 7899999999987543222 333422111111 111110 0 00111
Q ss_pred HHHH----------HHHHHHhhhcccCC-cceEEEecCc----eechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCC-
Q 008503 136 LKLV----------FHALEERKQAKDRS-LKGAVVYYDG----QMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEA- 199 (563)
Q Consensus 136 ~~~~----------~~~l~~~~~~~~~~-~~~~~~~~~~----~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~- 199 (563)
..++ .+.|.+.+...... -.+.+. ..+ ......+...+...+.+.++++++++.|++|..+++
T Consensus 80 ~~lV~~lv~~s~~~i~~L~~~Gv~F~~~~~~G~~~-~~g~~~~~~gG~~~~r~l~~~l~~~~~~i~~~~~v~~Ll~d~~~ 158 (614)
T TIGR02061 80 EDLIFDMARHVDDSVHLFEEWGLPLWIKPEDGKYV-REGRWQIMIHGESYKPIVAEAAKNALGDIFERIFIVKLLLDKNT 158 (614)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCceecCCCCccc-cCCCcccCcCchhHHHHHHHHHHhCCCeEEcccEEEEEEecCCC
Confidence 1111 22222222111000 000011 110 011223444455555667789999999999998642
Q ss_pred CCcEEEEEEEECCCCcEEEEEeCeEEEccCcChhh
Q 008503 200 SNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDS 234 (563)
Q Consensus 200 ~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~~s~~ 234 (563)
+|+|+||.+.+..+++...+.|+.||+|||.|+..
T Consensus 159 ~GrV~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~l 193 (614)
T TIGR02061 159 PNRIAGAVGFNVRANEVHVFKAKTVIVAAGGAVNV 193 (614)
T ss_pred CCeEEEEEEEEeCCCcEEEEECCEEEECCCccccc
Confidence 15899999876567776789999999999999753
No 127
>PRK07588 hypothetical protein; Provisional
Probab=99.24 E-value=6.3e-10 Score=117.02 Aligned_cols=144 Identities=13% Similarity=0.151 Sum_probs=84.9
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhhhc--
Q 008503 72 LDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQA-- 149 (563)
Q Consensus 72 ~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 149 (563)
.||+|||||++|+++|+.|+++|++|+|+||.+... ..++...+...+.+.+++. . +.+.+.+.+..
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~-~~g~~~~l~~~~~~~l~~l----G------l~~~l~~~~~~~~ 69 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELR-TGGYMVDFWGVGYEVAKRM----G------ITDQLREAGYQIE 69 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCCcc-CCCeEEeccCcHHHHHHHc----C------CHHHHHhccCCcc
Confidence 389999999999999999999999999999985211 1122222333444444331 1 01112211110
Q ss_pred -----ccCCc-ceEEE---e---c--C-ceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCC
Q 008503 150 -----KDRSL-KGAVV---Y---Y--D-GQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSG 214 (563)
Q Consensus 150 -----~~~~~-~~~~~---~---~--~-~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g 214 (563)
...+. ...+. + . . ..+....+...|.+.+ ..|++++++++|++++.++ +.+. |.+ .+|
T Consensus 70 ~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~-~~~v~i~~~~~v~~i~~~~--~~v~-v~~---~~g 142 (391)
T PRK07588 70 HVRSVDPTGRRKADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAI-DGQVETIFDDSIATIDEHR--DGVR-VTF---ERG 142 (391)
T ss_pred ceEEEcCCCCEEEEecHHHccccCCCceEEEEHHHHHHHHHHhh-hcCeEEEeCCEEeEEEECC--CeEE-EEE---CCC
Confidence 00000 00010 0 0 0 1234455666665543 4589999999999998765 3332 333 334
Q ss_pred cEEEEEeCeEEEccCcChhhh
Q 008503 215 KEFDTYAKVVVNAAGPFCDSV 235 (563)
Q Consensus 215 ~~~~i~A~~VI~AtG~~s~~l 235 (563)
+ ++++|.||.|+|.+|...
T Consensus 143 ~--~~~~d~vIgADG~~S~vR 161 (391)
T PRK07588 143 T--PRDFDLVIGADGLHSHVR 161 (391)
T ss_pred C--EEEeCEEEECCCCCccch
Confidence 3 578999999999999643
No 128
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=99.24 E-value=1.6e-10 Score=127.20 Aligned_cols=160 Identities=21% Similarity=0.226 Sum_probs=93.3
Q ss_pred EEEECCchHHHHHHHHHHHCCCcEEEEeccC-CCCCCccCCCCccccc-----h-----hhHHHHhhc---c-CcccHH-
Q 008503 74 ILVIGGGATGCGVALDAATRGLRVGLVERED-FSSGTSSRSTKLIHGG-----V-----RYLEKAVFN---L-DYGQLK- 137 (563)
Q Consensus 74 VvIIGaGiaG~~~A~~la~~G~~V~llEk~~-~~~g~s~~~~~~~~~g-----~-----~~~~~~~~~---~-~~~~~~- 137 (563)
|||||+|++|+++|+.|++.|++|+||||.+ +..+.|..+.|-+... . .+....... + +...++
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~~~~g~s~~a~Ggi~a~~~~~~~~ds~e~~~~d~~~~g~~~~d~~lv~~ 80 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDAPRRAHSIAAQGGINGAVNTKGDGDSPWRHFDDTVKGGDFRARESPVKR 80 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecCCCCCccchhhhhhhhhhcccCCCCCCHHHHHHHHHHhcCCCCCHHHHHH
Confidence 7999999999999999999999999999997 5444444433322111 0 011111100 0 000011
Q ss_pred ------HHHHHHHHhhhcccCCcceEE--EecCce----------echHHHHHHHHHHHHH----CCCEEEcCcEEEEEE
Q 008503 138 ------LVFHALEERKQAKDRSLKGAV--VYYDGQ----------MNDSRLNVGLALTAAL----AGAAVLNHAEVISLI 195 (563)
Q Consensus 138 ------~~~~~l~~~~~~~~~~~~~~~--~~~~~~----------~~~~~l~~~l~~~a~~----~G~~i~~~~~v~~l~ 195 (563)
...+++.+.+........+.+ ....+. .....+...|.+.+.+ .|+++++++.|++|.
T Consensus 81 l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~R~~~~~~~tG~~i~~~L~~~~~~~~~~~gV~i~~~t~v~~Li 160 (603)
T TIGR01811 81 LAVASPEIIDLMDAMGVPFAREYGGLLDTRSFGGVQVSRTAYARGQTGQQLLLALDSALRRQIAAGLVEKYEGWEMLDII 160 (603)
T ss_pred HHHHHHHHHHHHHHcCCEEEecCCCccccccccCcccCcceecCCCChhHHHHHHHHHHHhhhccCCcEEEeCcEEEEEE
Confidence 122333333322110000000 000010 0123445555554433 489999999999999
Q ss_pred EcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccCcChhh
Q 008503 196 KDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDS 234 (563)
Q Consensus 196 ~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~~s~~ 234 (563)
.+++ ++|+||.+.+..+++...+.||.||+|||.++..
T Consensus 161 ~dd~-grV~GV~~~~~~~g~~~~i~AkaVVLATGG~g~~ 198 (603)
T TIGR01811 161 VVDG-NRARGIIARNLVTGEIETHSADAVILATGGYGNV 198 (603)
T ss_pred EcCC-CEEEEEEEEECCCCcEEEEEcCEEEECCCCCcCc
Confidence 8654 6999999887446666689999999999998643
No 129
>PRK08163 salicylate hydroxylase; Provisional
Probab=99.24 E-value=2.4e-10 Score=120.40 Aligned_cols=152 Identities=16% Similarity=0.163 Sum_probs=93.8
Q ss_pred CCccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhhhc
Q 008503 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQA 149 (563)
Q Consensus 70 ~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 149 (563)
...||+|||||++|+++|+.|++.|++|+|+||.+.. +..++...+...+.+.+++. .. .+.+.+....
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~-~~~g~gi~l~~~~~~~l~~l----g~------~~~~~~~~~~ 71 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEI-GEIGAGIQLGPNAFSALDAL----GV------GEAARQRAVF 71 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCccc-ccccceeeeCchHHHHHHHc----CC------hHHHHhhccC
Confidence 3579999999999999999999999999999998532 22233233333444444332 10 1111111110
Q ss_pred -------c--cCCcceEEE----------ecCceechHHHHHHHHHHHHHCC-CEEEcCcEEEEEEEcCCCCcEEEEEEE
Q 008503 150 -------K--DRSLKGAVV----------YYDGQMNDSRLNVGLALTAALAG-AAVLNHAEVISLIKDEASNRIIGARIR 209 (563)
Q Consensus 150 -------~--~~~~~~~~~----------~~~~~~~~~~l~~~l~~~a~~~G-~~i~~~~~v~~l~~~~~~g~v~gv~~~ 209 (563)
. .......+. .....++...+...|.+.+.+.+ ++++++++|+++..++ +.+. |..
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~--~~v~-v~~- 147 (396)
T PRK08163 72 TDHLTMMDAVDAEEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDG--DGVT-VFD- 147 (396)
T ss_pred CcceEEEeCCCCCEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecCC--CceE-EEE-
Confidence 0 000000000 00123567778888888887764 9999999999998764 3332 332
Q ss_pred ECCCCcEEEEEeCeEEEccCcChhhhhhhhc
Q 008503 210 NNLSGKEFDTYAKVVVNAAGPFCDSVRKLAD 240 (563)
Q Consensus 210 d~~~g~~~~i~A~~VI~AtG~~s~~l~~~~g 240 (563)
.+| .++.||.||.|+|.+|.....+.+
T Consensus 148 --~~g--~~~~ad~vV~AdG~~S~~r~~~~g 174 (396)
T PRK08163 148 --QQG--NRWTGDALIGCDGVKSVVRQSLVG 174 (396)
T ss_pred --cCC--CEEecCEEEECCCcChHHHhhccC
Confidence 234 368999999999999976544444
No 130
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.24 E-value=2.8e-10 Score=119.86 Aligned_cols=154 Identities=21% Similarity=0.313 Sum_probs=91.0
Q ss_pred CCccEEEECCchHHHHHHHHHHHC---CCcEEEEeccCCC----CCCccCCCCccccchhhHHHHhhccCcccHHHHHHH
Q 008503 70 NPLDILVIGGGATGCGVALDAATR---GLRVGLVEREDFS----SGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHA 142 (563)
Q Consensus 70 ~~~DVvIIGaGiaG~~~A~~la~~---G~~V~llEk~~~~----~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 142 (563)
..+||+|||||++|+++|+.|++. |++|+|+||.... .+..++..++...+.+.+++. . +++.
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l----g------l~~~ 71 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARL----G------VWQA 71 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHC----C------Chhh
Confidence 358999999999999999999998 9999999996311 111122223333334443321 0 0111
Q ss_pred HHHhhhc------ccCCcceEE--E-------ecCceechHHHHHHHHHHHHH-CCCEEEcCcEEEEEEEcCCCCcEEEE
Q 008503 143 LEERKQA------KDRSLKGAV--V-------YYDGQMNDSRLNVGLALTAAL-AGAAVLNHAEVISLIKDEASNRIIGA 206 (563)
Q Consensus 143 l~~~~~~------~~~~~~~~~--~-------~~~~~~~~~~l~~~l~~~a~~-~G~~i~~~~~v~~l~~~~~~g~v~gv 206 (563)
+.+.... ......... . +....++...+...|.+.+.+ .|++++++++|+++..++ +.+ .|
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~--~~~-~v 148 (395)
T PRK05732 72 LADCATPITHIHVSDRGHAGFVRLDAEDYGVPALGYVVELHDVGQRLFALLDKAPGVTLHCPARVANVERTQ--GSV-RV 148 (395)
T ss_pred hHhhcCCccEEEEecCCCCceEEeehhhcCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEEcC--CeE-EE
Confidence 1111100 000000000 0 001124445566677776655 589999999999998764 333 24
Q ss_pred EEEECCCCcEEEEEeCeEEEccCcChhhhhhhhcCC
Q 008503 207 RIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQN 242 (563)
Q Consensus 207 ~~~d~~~g~~~~i~A~~VI~AtG~~s~~l~~~~g~~ 242 (563)
++ .++ ..+.++.||.|+|.+|. +++..+..
T Consensus 149 ~~---~~g--~~~~a~~vI~AdG~~S~-vr~~~~~~ 178 (395)
T PRK05732 149 TL---DDG--ETLTGRLLVAADGSHSA-LREALGID 178 (395)
T ss_pred EE---CCC--CEEEeCEEEEecCCChh-hHHhhCCC
Confidence 33 233 36899999999999986 66666655
No 131
>PRK07538 hypothetical protein; Provisional
Probab=99.23 E-value=4e-10 Score=119.39 Aligned_cols=154 Identities=20% Similarity=0.253 Sum_probs=93.5
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhhhc--
Q 008503 72 LDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQA-- 149 (563)
Q Consensus 72 ~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 149 (563)
.||+|||||++|+++|+.|+++|++|+|+|+.+... ..+....+...+.+.+.+. . +.+.+.+.+..
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~-~~g~gi~l~p~~~~~L~~l----g------l~~~l~~~~~~~~ 69 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELR-PLGVGINLLPHAVRELAEL----G------LLDALDAIGIRTR 69 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCccc-ccCcceeeCchHHHHHHHC----C------CHHHHHhhCCCCc
Confidence 389999999999999999999999999999985221 2223333333444544432 0 01111111110
Q ss_pred -----ccCC---------cceEEEecCceechHHHHHHHHHHHHH-CCC-EEEcCcEEEEEEEcCCCCcEEEEEEEECCC
Q 008503 150 -----KDRS---------LKGAVVYYDGQMNDSRLNVGLALTAAL-AGA-AVLNHAEVISLIKDEASNRIIGARIRNNLS 213 (563)
Q Consensus 150 -----~~~~---------~~~~~~~~~~~~~~~~l~~~l~~~a~~-~G~-~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~ 213 (563)
...+ ....+.+....++...+...|.+.+.+ .|. .++++++|+++..+++ +.+ +.+.+..+
T Consensus 70 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~-~~~--~~~~~~~~ 146 (413)
T PRK07538 70 ELAYFNRHGQRIWSEPRGLAAGYDWPQYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDAD-VTV--VFLGDRAG 146 (413)
T ss_pred ceEEEcCCCCEEeeccCCcccCCCCceEEEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCC-ceE--EEEeccCC
Confidence 0000 000000011135667788888888765 464 6999999999987754 322 33433234
Q ss_pred CcEEEEEeCeEEEccCcChhhhhhhhc
Q 008503 214 GKEFDTYAKVVVNAAGPFCDSVRKLAD 240 (563)
Q Consensus 214 g~~~~i~A~~VI~AtG~~s~~l~~~~g 240 (563)
++..+++||.||.|+|.+|. +++.++
T Consensus 147 g~~~~~~adlvIgADG~~S~-vR~~l~ 172 (413)
T PRK07538 147 GDLVSVRGDVLIGADGIHSA-VRAQLY 172 (413)
T ss_pred CccceEEeeEEEECCCCCHH-Hhhhhc
Confidence 44468999999999999986 445444
No 132
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=99.23 E-value=3e-10 Score=119.98 Aligned_cols=152 Identities=20% Similarity=0.287 Sum_probs=92.2
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEeccC-CCC-CC--ccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHh
Q 008503 71 PLDILVIGGGATGCGVALDAATRGLRVGLVERED-FSS-GT--SSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEER 146 (563)
Q Consensus 71 ~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~-~~~-g~--s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~ 146 (563)
.+||+|||||++|+++|+.|+++|++|+|+|+.+ ... +. ..+..++.+.+.+.+++.. +++.+.+.
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG----------l~~~l~~~ 73 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNLG----------AWQGIEAR 73 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcccccCCCCcceecccHHHHHHHHhCC----------chhhhhhh
Confidence 5899999999999999999999999999999962 111 11 1233344444555554320 11112111
Q ss_pred -hhc-------ccCCcceEEEec--------Cc-eechHHHHHHHHHHHHH-CCCEEEcCcEEEEEEEcCCCCcEEEEEE
Q 008503 147 -KQA-------KDRSLKGAVVYY--------DG-QMNDSRLNVGLALTAAL-AGAAVLNHAEVISLIKDEASNRIIGARI 208 (563)
Q Consensus 147 -~~~-------~~~~~~~~~~~~--------~~-~~~~~~l~~~l~~~a~~-~G~~i~~~~~v~~l~~~~~~g~v~gv~~ 208 (563)
... ..... +...+. -+ .+....+...|.+.+.+ .|++++++++|+++..+++ .+ .|.+
T Consensus 74 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~--~~-~v~~ 149 (405)
T PRK08850 74 RAAPYIAMEVWEQDSF-ARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAVGES--EA-WLTL 149 (405)
T ss_pred hCCcccEEEEEeCCCC-ceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeCC--eE-EEEE
Confidence 000 01100 111000 01 23334556677777766 4799999999999987653 33 3443
Q ss_pred EECCCCcEEEEEeCeEEEccCcChhhhhhhhcCC
Q 008503 209 RNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQN 242 (563)
Q Consensus 209 ~d~~~g~~~~i~A~~VI~AtG~~s~~l~~~~g~~ 242 (563)
.+|+ +++||.||.|+|.+|. +++.++.+
T Consensus 150 ---~~g~--~~~a~lvIgADG~~S~-vR~~~~~~ 177 (405)
T PRK08850 150 ---DNGQ--ALTAKLVVGADGANSW-LRRQMDIP 177 (405)
T ss_pred ---CCCC--EEEeCEEEEeCCCCCh-hHHHcCCC
Confidence 3443 7999999999999885 56666655
No 133
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=99.22 E-value=1.2e-09 Score=113.61 Aligned_cols=228 Identities=15% Similarity=0.158 Sum_probs=121.3
Q ss_pred cEEEECCchHHHHHHHHHHHC--CCcEEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhhhc-
Q 008503 73 DILVIGGGATGCGVALDAATR--GLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQA- 149 (563)
Q Consensus 73 DVvIIGaGiaG~~~A~~la~~--G~~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 149 (563)
||+|||||++|+++|+.|++. |++|+|+|+.+..++... -.+...+..- ......+.+......
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~t--w~~~~~~~~~-----------~~~~~~~~~v~~~W~~ 67 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHT--WSFFDSDLSD-----------AQHAWLADLVQTDWPG 67 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCccc--ceecccccch-----------hhhhhhhhhheEeCCC
Confidence 899999999999999999987 999999999863322111 1111111100 000001111000000
Q ss_pred ---ccCCcceEEEecCceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEE
Q 008503 150 ---KDRSLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVN 226 (563)
Q Consensus 150 ---~~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~ 226 (563)
..+.....+.+....++...+...+.+.+. ..++++++|+.+ +.+ . |++ .+| .+++|+.||+
T Consensus 68 ~~v~~~~~~~~l~~~Y~~I~r~~f~~~l~~~l~---~~i~~~~~V~~v--~~~--~---v~l---~dg--~~~~A~~VI~ 132 (370)
T TIGR01789 68 YEVRFPKYRRKLKTAYRSMTSTRFHEGLLQAFP---EGVILGRKAVGL--DAD--G---VDL---APG--TRINARSVID 132 (370)
T ss_pred CEEECcchhhhcCCCceEEEHHHHHHHHHHhhc---ccEEecCEEEEE--eCC--E---EEE---CCC--CEEEeeEEEE
Confidence 000000011122245566666666655442 237778899988 322 2 444 234 3799999999
Q ss_pred ccCcChhhhhhhhcCCCCCeeecCCceEEEecCCcCCCCccccc----ccCCCCcEEEEeecC-CcEEeeecCCCCCCCC
Q 008503 227 AAGPFCDSVRKLADQNVQPMICPSSGVHIVLPDYYSPEGMGLIV----PKTKDGRVVFMLPWL-GRTVAGTTDSDTVITL 301 (563)
Q Consensus 227 AtG~~s~~l~~~~g~~~~~~v~~~~G~~~~~~~~~~~~~~~~~~----~~~~~g~~~~~~P~~-g~~~iG~t~~~~~~~~ 301 (563)
|+|..+..... . ..+...|..+.+..+ .......++ ++....+++|++|.. +..++..|.-. .
T Consensus 133 A~G~~s~~~~~-~------~~Q~f~G~~~r~~~p-~~~~~~~lMD~~~~q~~g~~F~Y~lP~~~~~~lvE~T~~s----~ 200 (370)
T TIGR01789 133 CRGFKPSAHLK-G------GFQVFLGREMRLQEP-HGLENPIIMDATVDQLAGYRFVYVLPLGSHDLLIEDTYYA----D 200 (370)
T ss_pred CCCCCCCcccc-c------eeeEEEEEEEEEcCC-CCCCccEEEeeeccCCCCceEEEECcCCCCeEEEEEEecc----C
Confidence 99987643222 1 134455666666654 332322221 222334788899985 66777655321 1
Q ss_pred CCCCCHHHHHHHH-HHHhhhccCCCCCCCcccceeeeeecccC
Q 008503 302 LPEPHEDEIQFIL-DAISDYLNVKVRRTDVLSAWSGIRPLAMD 343 (563)
Q Consensus 302 ~~~~~~~~~~~ll-~~~~~~~~~~l~~~~v~~~~aG~rp~~~d 343 (563)
.+..+.++++.-+ +.... .++....|+....|+.|++.+
T Consensus 201 ~~~l~~~~l~~~l~~~~~~---~g~~~~~i~~~e~g~iPm~~~ 240 (370)
T TIGR01789 201 DPLLDRNALSQRIDQYARA---NGWQNGTPVRHEQGVLPVLLG 240 (370)
T ss_pred CCCCCHHHHHHHHHHHHHH---hCCCceEEEEeeeeEEeeecC
Confidence 1334455554333 33222 234455677777799998643
No 134
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=99.21 E-value=2.6e-10 Score=125.40 Aligned_cols=64 Identities=30% Similarity=0.328 Sum_probs=52.6
Q ss_pred hHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEe-CeEEEccCcChhh
Q 008503 167 DSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYA-KVVVNAAGPFCDS 234 (563)
Q Consensus 167 ~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A-~~VI~AtG~~s~~ 234 (563)
+..++..|.+.+++.|++++++++|++|..++ ++|.||.+.. +++...+.| +.||+|||.|+.+
T Consensus 220 G~~l~~aL~~~~~~~Gv~i~~~t~v~~Li~~~--g~V~GV~~~~--~g~~~~i~A~~~VVlAtGg~~~n 284 (578)
T PRK12843 220 GNALIGRLLYSLRARGVRILTQTDVESLETDH--GRVIGATVVQ--GGVRRRIRARGGVVLATGGFNRH 284 (578)
T ss_pred cHHHHHHHHHHHHhCCCEEEeCCEEEEEEeeC--CEEEEEEEec--CCeEEEEEccceEEECCCCcccC
Confidence 44577788888999999999999999998764 7999998763 455567887 7899999999864
No 135
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=99.21 E-value=2.3e-10 Score=123.17 Aligned_cols=151 Identities=24% Similarity=0.317 Sum_probs=92.0
Q ss_pred CCccEEEECCchHHHHHHHHHHHCCCcEEEEeccC-CCCCCccCC-CCccccchhhHHHHhhccCcccHHHHHHHHHHhh
Q 008503 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVERED-FSSGTSSRS-TKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERK 147 (563)
Q Consensus 70 ~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~-~~~g~s~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~ 147 (563)
.+|||+|||||++|+.+|+.+++.|++|+|||++. ..++-++.+ .|.+..+ .+.++. ..+. . .+.+.....+
T Consensus 3 ~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~CnpsiGG~akg-~lvrEi-dalG-g---~~g~~~d~~g 76 (618)
T PRK05192 3 EEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAKG-HLVREI-DALG-G---EMGKAIDKTG 76 (618)
T ss_pred ccceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCCccccccchhh-HHHHHH-HhcC-C---HHHHHHhhcc
Confidence 46999999999999999999999999999999983 222222221 1111111 111110 0000 0 0001111111
Q ss_pred hc---ccCCcceEEEecCceechHHHHHHHHHHHHHC-CCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCe
Q 008503 148 QA---KDRSLKGAVVYYDGQMNDSRLNVGLALTAALA-GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKV 223 (563)
Q Consensus 148 ~~---~~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~-G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~ 223 (563)
.. .+..-..++....+++|+..+...+.+.+.+. |++++ .+.|+++..++ ++|.||.+. +| ..+.|+.
T Consensus 77 iq~r~ln~skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~I~-q~~V~~Li~e~--grV~GV~t~---dG--~~I~Ak~ 148 (618)
T PRK05192 77 IQFRMLNTSKGPAVRALRAQADRKLYRAAMREILENQPNLDLF-QGEVEDLIVEN--GRVVGVVTQ---DG--LEFRAKA 148 (618)
T ss_pred CceeecccCCCCceeCcHHhcCHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEecC--CEEEEEEEC---CC--CEEECCE
Confidence 00 11111112222335789999999998888765 78875 56799988765 688888763 34 4799999
Q ss_pred EEEccCcChhh
Q 008503 224 VVNAAGPFCDS 234 (563)
Q Consensus 224 VI~AtG~~s~~ 234 (563)
||+|||.|+..
T Consensus 149 VIlATGTFL~g 159 (618)
T PRK05192 149 VVLTTGTFLRG 159 (618)
T ss_pred EEEeeCcchhc
Confidence 99999988754
No 136
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.19 E-value=8.6e-10 Score=115.65 Aligned_cols=153 Identities=22% Similarity=0.250 Sum_probs=91.0
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCC----CCC-ccCCCCccccchhhHHHHhhccCcccHHHHHHHHHH
Q 008503 71 PLDILVIGGGATGCGVALDAATRGLRVGLVEREDFS----SGT-SSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEE 145 (563)
Q Consensus 71 ~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~----~g~-s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~ 145 (563)
.+||+|||||++|+++|+.|++.|++|+|+|+.+.. .+. ..+...+.+.+.+.+++... ++.+.+
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~----------~~~~~~ 72 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGA----------WSSIVA 72 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCC----------chhhhH
Confidence 489999999999999999999999999999987421 111 12223444555555543210 111111
Q ss_pred h-hhc-------ccCCcceEEE------ecCce-echHHHHHHHHHHHHH-CCCEEEcCcEEEEEEEcCCCCcEEEEEEE
Q 008503 146 R-KQA-------KDRSLKGAVV------YYDGQ-MNDSRLNVGLALTAAL-AGAAVLNHAEVISLIKDEASNRIIGARIR 209 (563)
Q Consensus 146 ~-~~~-------~~~~~~~~~~------~~~~~-~~~~~l~~~l~~~a~~-~G~~i~~~~~v~~l~~~~~~g~v~gv~~~ 209 (563)
. ... ........+. ...+. +....+...|.+.+.+ .|++++++++|++++.+++ .+ .|.+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~--~~-~v~~- 148 (384)
T PRK08849 73 MRVCPYKRLETWEHPECRTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSAE--GN-RVTL- 148 (384)
T ss_pred hhCCccceEEEEeCCCceEEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcCC--eE-EEEE-
Confidence 0 000 0000000010 00112 3334455566666554 4799999999999988753 33 2444
Q ss_pred ECCCCcEEEEEeCeEEEccCcChhhhhhhhcCC
Q 008503 210 NNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQN 242 (563)
Q Consensus 210 d~~~g~~~~i~A~~VI~AtG~~s~~l~~~~g~~ 242 (563)
.+| .+++||.||.|+|.+|. +++..+..
T Consensus 149 --~~g--~~~~~~lvIgADG~~S~-vR~~~gi~ 176 (384)
T PRK08849 149 --ESG--AEIEAKWVIGADGANSQ-VRQLAGIG 176 (384)
T ss_pred --CCC--CEEEeeEEEEecCCCch-hHHhcCCC
Confidence 334 37999999999999995 55655544
No 137
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=99.16 E-value=3.2e-10 Score=122.58 Aligned_cols=163 Identities=22% Similarity=0.287 Sum_probs=105.8
Q ss_pred CCCccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccchh-----------h-HHHHhhccCcc-c
Q 008503 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVR-----------Y-LEKAVFNLDYG-Q 135 (563)
Q Consensus 69 ~~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~~-----------~-~~~~~~~~~~~-~ 135 (563)
..+|||||||||.+|+.+|..+++.|++|+||||.....|.|....+-+..... + ........++. +
T Consensus 4 ~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg~t~~a~gG~~a~~~~~~~~~~ds~e~~~~dtvkg~d~l~d 83 (562)
T COG1053 4 IHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGHTVAAQGGINAALGNTVDVEGDSPELHFYDTVKGGDGLGD 83 (562)
T ss_pred cccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCCchhhhcccccccccCcccccCCCHHHHHHHHHhccCCcCC
Confidence 567999999999999999999999999999999997555666554443322211 0 01111111110 1
Q ss_pred ---H-------HHHHHHHHHhhhcccCCcc--------eEE----EecCceechHHHHHHHHHHHHH-CCCEEEcCcEEE
Q 008503 136 ---L-------KLVFHALEERKQAKDRSLK--------GAV----VYYDGQMNDSRLNVGLALTAAL-AGAAVLNHAEVI 192 (563)
Q Consensus 136 ---~-------~~~~~~l~~~~~~~~~~~~--------~~~----~~~~~~~~~~~l~~~l~~~a~~-~G~~i~~~~~v~ 192 (563)
. ......+.+.+.+...... ++. .++.+.--...+...|.+.+.+ .+.+++.+..++
T Consensus 84 qd~i~~~~~~ap~~v~~Le~~G~~f~r~~~G~~~~r~fgg~~~~rt~~~~~~tG~~ll~~L~~~~~~~~~~~~~~~~~~~ 163 (562)
T COG1053 84 QDAVEAFADEAPEAVDELEKWGVPFSRTEDGRIYQRRFGGHSKPRTCFAADKTGHELLHTLYEQLLKFSGIEIFDEYFVL 163 (562)
T ss_pred HHHHHHHHHhhHHHHHHHHHhCCCcccCCCccccccccCCcCCCcceecCCCCcHHHHHHHHHHHHHhhcchhhhhhhhh
Confidence 0 1122334433333111111 111 1222222345677788888877 678999999999
Q ss_pred EEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccCcCh
Q 008503 193 SLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 232 (563)
Q Consensus 193 ~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~~s 232 (563)
++..+++ +.+.||...+..+++...+++|.||+|||.+.
T Consensus 164 ~l~~~~~-~~v~Gvv~~~~~~g~~~~~~akavilaTGG~g 202 (562)
T COG1053 164 DLLVDDG-GGVAGVVARDLRTGELYVFRAKAVILATGGAG 202 (562)
T ss_pred hheecCC-CcEEEEEEEEecCCcEEEEecCcEEEccCCce
Confidence 9998764 45899999887888878889999999999877
No 138
>PRK08401 L-aspartate oxidase; Provisional
Probab=99.14 E-value=4.6e-10 Score=120.42 Aligned_cols=154 Identities=16% Similarity=0.143 Sum_probs=90.0
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCcccc----c--h-hhHHHHhh---cc-CcccHH---
Q 008503 72 LDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHG----G--V-RYLEKAVF---NL-DYGQLK--- 137 (563)
Q Consensus 72 ~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~----g--~-~~~~~~~~---~~-~~~~~~--- 137 (563)
+||||||+|++|+++|+.|++.|++|+||||... .++|..+.+-+.. . . .+....+. .+ +.....
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~-~~~s~~a~ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~~ 80 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIK-KSNSYLAQAGIAFPILEGDSIRAHVLDTIRAGKYINDEEVVWNVI 80 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCC-CCCcHHHcCCcccccCCCCcHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 6999999999999999999999999999999853 2222222221110 0 0 01111110 00 000011
Q ss_pred ----HHHHHHHHhhhcccC-CcceEEEe----cCceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEE
Q 008503 138 ----LVFHALEERKQAKDR-SLKGAVVY----YDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARI 208 (563)
Q Consensus 138 ----~~~~~l~~~~~~~~~-~~~~~~~~----~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~ 208 (563)
...+++.+.+..... ...++..+ .........+...|.+.+.+.|++++++ .++.+..++ +++.||.+
T Consensus 81 ~~~~~~i~~L~~~Gv~f~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~-~v~~l~~~~--g~v~Gv~~ 157 (466)
T PRK08401 81 SKSSEAYDFLTSLGLEFEGNELEGGHSFPRVFTIKNETGKHIIKILYKHARELGVNFIRG-FAEELAIKN--GKAYGVFL 157 (466)
T ss_pred HHHHHHHHHHHHcCCCcccCCCcCCccCCeEEECCCCchHHHHHHHHHHHHhcCCEEEEe-EeEEEEeeC--CEEEEEEE
Confidence 112233332221110 01111101 0011123467888888899999999876 788887654 68888865
Q ss_pred EECCCCcEEEEEeCeEEEccCcChhhh
Q 008503 209 RNNLSGKEFDTYAKVVVNAAGPFCDSV 235 (563)
Q Consensus 209 ~d~~~g~~~~i~A~~VI~AtG~~s~~l 235 (563)
++ ..+.++.||+|||.|+...
T Consensus 158 ----~g--~~i~a~~VVLATGG~~~~~ 178 (466)
T PRK08401 158 ----DG--ELLKFDATVIATGGFSGLF 178 (466)
T ss_pred ----CC--EEEEeCeEEECCCcCcCCC
Confidence 23 3689999999999998754
No 139
>PRK06753 hypothetical protein; Provisional
Probab=99.13 E-value=4.1e-09 Score=110.06 Aligned_cols=147 Identities=16% Similarity=0.221 Sum_probs=85.5
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhhhc---
Q 008503 73 DILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQA--- 149 (563)
Q Consensus 73 DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 149 (563)
||+|||||++|+++|+.|++.|++|+|+||.+... ..+...++...+++.++.. . +.+.+...+..
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~-~~g~gi~l~~~~~~~L~~~----g------l~~~~~~~~~~~~~ 70 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVK-EVGAGIGIGDNVIKKLGNH----D------LAKGIKNAGQILST 70 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccc-ccccceeeChHHHHHHHhc----C------hHHHHHhcCCcccc
Confidence 79999999999999999999999999999985321 1122222323333333321 0 01111111110
Q ss_pred ----ccCC-cceEEE----ecCceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEE
Q 008503 150 ----KDRS-LKGAVV----YYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTY 220 (563)
Q Consensus 150 ----~~~~-~~~~~~----~~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~ 220 (563)
...+ ...... .....++...+...|.+.+. +.+++++++|+++..++ +.+ .|+. .+| .++.
T Consensus 71 ~~~~~~~g~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~--~~v-~v~~---~~g--~~~~ 140 (373)
T PRK06753 71 MNLLDDKGTLLNKVKLKSNTLNVTLHRQTLIDIIKSYVK--EDAIFTGKEVTKIENET--DKV-TIHF---ADG--ESEA 140 (373)
T ss_pred eeEEcCCCCEEeecccccCCccccccHHHHHHHHHHhCC--CceEEECCEEEEEEecC--CcE-EEEE---CCC--CEEe
Confidence 0000 000000 01122444556666655543 46899999999998764 343 3433 334 3689
Q ss_pred eCeEEEccCcChhhhhhhhcC
Q 008503 221 AKVVVNAAGPFCDSVRKLADQ 241 (563)
Q Consensus 221 A~~VI~AtG~~s~~l~~~~g~ 241 (563)
+|.||.|+|.+|. +++..+.
T Consensus 141 ~~~vigadG~~S~-vR~~~~~ 160 (373)
T PRK06753 141 FDLCIGADGIHSK-VRQSVNA 160 (373)
T ss_pred cCEEEECCCcchH-HHHHhCC
Confidence 9999999999985 5555543
No 140
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.12 E-value=6.9e-10 Score=127.95 Aligned_cols=164 Identities=23% Similarity=0.254 Sum_probs=94.4
Q ss_pred CCCccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCC-CCCccCC-CCccc---cchh----hHHHHhhccC-cccHHH
Q 008503 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFS-SGTSSRS-TKLIH---GGVR----YLEKAVFNLD-YGQLKL 138 (563)
Q Consensus 69 ~~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~-~g~s~~~-~~~~~---~g~~----~~~~~~~~~~-~~~~~~ 138 (563)
+.++||||||+|++|+++|+.+++.|++|+||||.... +|++... .++.. .+.. ++...+..-. ..+...
T Consensus 11 ~~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~~~sg~~~~g~~gi~~~~~~~~ds~e~~~~Dt~~~g~gl~d~~~ 90 (897)
T PRK13800 11 RLDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHVRHSGALAMGMDGVNNAVIPGKAEPEDYVAEITRANDGIVNQRT 90 (897)
T ss_pred eeecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccccCCCcccCCchhhhcccCCCccCHHHHHHHHHhhcCCCCCHHH
Confidence 45699999999999999999999999999999998752 2222111 11110 1101 1111111000 001111
Q ss_pred ----------HHHHHHHhhhcccCCcceEE-----EecCce----echHHHHHHHHHHHHHC----CCEEEcCcEEEEEE
Q 008503 139 ----------VFHALEERKQAKDRSLKGAV-----VYYDGQ----MNDSRLNVGLALTAALA----GAAVLNHAEVISLI 195 (563)
Q Consensus 139 ----------~~~~l~~~~~~~~~~~~~~~-----~~~~~~----~~~~~l~~~l~~~a~~~----G~~i~~~~~v~~l~ 195 (563)
..+.+.+.+........+.+ ...... -....+...|.+.+.+. ++.+..++.++++.
T Consensus 91 v~~~~~~a~~~i~~L~~~Gv~f~~~~~G~~~~~~~~~~~~~~~~~~tG~~i~~~L~~~l~~~~~~~~i~~~~~~~~~~Li 170 (897)
T PRK13800 91 VYQTATRGFAMVQRLERYGVKFEKDEHGEYAVRRVHRSGSYVLPMPEGKDVKKALYRVLRQRSMRERIRIENRLMPVRVL 170 (897)
T ss_pred HHHHHHhHHHHHHHHHHcCCceeeCCCCCEeeeeeccCCCccccCCCchhHHHHHHHHHHHhhhcCCcEEEeceeeEEEE
Confidence 12333333322111111111 000000 02234555666655443 68888888888888
Q ss_pred EcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccCcChhh
Q 008503 196 KDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDS 234 (563)
Q Consensus 196 ~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~~s~~ 234 (563)
.++ |+|.||.+.+..+|+...|.||.||+|||.++..
T Consensus 171 ~~~--g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~~ 207 (897)
T PRK13800 171 TEG--GRAVGAAALNTRTGEFVTVGAKAVILATGPCGRL 207 (897)
T ss_pred eeC--CEEEEEEEEecCCCcEEEEECCEEEECCCccccC
Confidence 764 7999998877567877789999999999998753
No 141
>PRK05868 hypothetical protein; Validated
Probab=99.11 E-value=7.4e-09 Score=108.00 Aligned_cols=149 Identities=17% Similarity=0.137 Sum_probs=84.4
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhhhc--
Q 008503 72 LDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQA-- 149 (563)
Q Consensus 72 ~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 149 (563)
.||+|||||++|+++|+.|+++|++|+|+|+.+... ..+....+...+.+.+++. . +.+.+.+....
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~-~~g~~i~~~~~a~~~L~~l----G------l~~~~~~~~~~~~ 70 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLR-PGGQAIDVRGPALDVLERM----G------LLAAAQEHKTRIR 70 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC-CCceeeeeCchHHHHHHhc----C------CHHHHHhhccCcc
Confidence 389999999999999999999999999999985321 1122222222333444321 1 01111111100
Q ss_pred -----ccCCcc-eE--------EE--ecCceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCC
Q 008503 150 -----KDRSLK-GA--------VV--YYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLS 213 (563)
Q Consensus 150 -----~~~~~~-~~--------~~--~~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~ 213 (563)
...... .. .. ...-.+....+...|. .+...|++++++++|+++..++ +.| .|.+ .+
T Consensus 71 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~-~~~~~~v~i~~~~~v~~i~~~~--~~v-~v~~---~d 143 (372)
T PRK05868 71 GASFVDRDGNELFRDTESTPTGGPVNSPDIELLRDDLVELLY-GATQPSVEYLFDDSISTLQDDG--DSV-RVTF---ER 143 (372)
T ss_pred ceEEEeCCCCEEeecccccccCCCCCCceEEEEHHHHHHHHH-HhccCCcEEEeCCEEEEEEecC--CeE-EEEE---CC
Confidence 000000 00 00 0001223344554443 3445789999999999998764 333 3444 33
Q ss_pred CcEEEEEeCeEEEccCcChhhhhhhhc
Q 008503 214 GKEFDTYAKVVVNAAGPFCDSVRKLAD 240 (563)
Q Consensus 214 g~~~~i~A~~VI~AtG~~s~~l~~~~g 240 (563)
+. +++||+||.|+|.+|.....+.+
T Consensus 144 g~--~~~adlvIgADG~~S~vR~~~~~ 168 (372)
T PRK05868 144 AA--AREFDLVIGADGLHSNVRRLVFG 168 (372)
T ss_pred CC--eEEeCEEEECCCCCchHHHHhcC
Confidence 43 68999999999999964333334
No 142
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=99.10 E-value=1e-09 Score=115.30 Aligned_cols=156 Identities=15% Similarity=0.141 Sum_probs=91.6
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCC-CCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhhhc
Q 008503 71 PLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSS-GTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQA 149 (563)
Q Consensus 71 ~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~-g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 149 (563)
.+||+|||||++|+++|+.|+++|++|+||||.+... ....+...+...+.+.+++. . +.+.+...+..
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~a~~l~~~~~~~L~~l----G------l~~~l~~~~~~ 71 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGRIRAGVLEQGTVDLLREA----G------VDERMDREGLV 71 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCceeEeeECHHHHHHHHHC----C------ChHHHHhcCce
Confidence 4799999999999999999999999999999986311 11111122223344444432 0 11112111111
Q ss_pred ------ccCCcceEEEec--Cc-----eechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcE
Q 008503 150 ------KDRSLKGAVVYY--DG-----QMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKE 216 (563)
Q Consensus 150 ------~~~~~~~~~~~~--~~-----~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~ 216 (563)
........+.+. .. ......+...|.+.+.+.|+.++++++++.+...++ .. ..|.+. .+|+.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~-~~-~~V~~~--~~g~~ 147 (390)
T TIGR02360 72 HEGTEIAFDGQRFRIDLKALTGGKTVMVYGQTEVTRDLMEAREAAGLTTVYDADDVRLHDLAG-DR-PYVTFE--RDGER 147 (390)
T ss_pred ecceEEeeCCEEEEEeccccCCCceEEEeCHHHHHHHHHHHHHhcCCeEEEeeeeEEEEecCC-Cc-cEEEEE--ECCeE
Confidence 000000001110 00 112346667788888888999999998888765332 22 245553 14544
Q ss_pred EEEEeCeEEEccCcChhhhhhhhcC
Q 008503 217 FDTYAKVVVNAAGPFCDSVRKLADQ 241 (563)
Q Consensus 217 ~~i~A~~VI~AtG~~s~~l~~~~g~ 241 (563)
.+++||.||.|+|.+|. +++.++.
T Consensus 148 ~~i~adlvIGADG~~S~-VR~~l~~ 171 (390)
T TIGR02360 148 HRLDCDFIAGCDGFHGV-SRASIPA 171 (390)
T ss_pred EEEEeCEEEECCCCchh-hHHhcCc
Confidence 57999999999999996 5555443
No 143
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=99.09 E-value=2.2e-09 Score=108.40 Aligned_cols=70 Identities=23% Similarity=0.179 Sum_probs=50.7
Q ss_pred HHHHHHHHHC-CCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCC-cEEEEEeCeEEEccCcC-hhhhhhhhcC
Q 008503 172 VGLALTAALA-GAAVLNHAEVISLIKDEASNRIIGARIRNNLSG-KEFDTYAKVVVNAAGPF-CDSVRKLADQ 241 (563)
Q Consensus 172 ~~l~~~a~~~-G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g-~~~~i~A~~VI~AtG~~-s~~l~~~~g~ 241 (563)
..++..+.+. |++|+.++.|++|..+.++++++||.+.+..+. ....+.+|.||+|+|+. +..|+...|.
T Consensus 196 ~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai~Tp~LLl~SGi 268 (296)
T PF00732_consen 196 TTYLPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVDNDGGVQRRIVAAKEVILAAGAIGTPRLLLRSGI 268 (296)
T ss_dssp HHHHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEETTTSEEEEEEEEEEEEE-SHHHHHHHHHHHTTE
T ss_pred hcccchhhccCCccEEcCcEEEEEeeeccccceeeeeeeecCCcceeeeccceeEEeccCCCCChhhhccccc
Confidence 3445555555 999999999999977643379999999984433 24567889999999974 6666665554
No 144
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=99.07 E-value=1.3e-09 Score=111.47 Aligned_cols=148 Identities=26% Similarity=0.333 Sum_probs=83.4
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEE-eccCCCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhhhc--
Q 008503 73 DILVIGGGATGCGVALDAATRGLRVGLV-EREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQA-- 149 (563)
Q Consensus 73 DVvIIGaGiaG~~~A~~la~~G~~V~ll-Ek~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 149 (563)
||+|||||.+|+.||+.+|+.|++|+|+ ++.+.....++.++ +-..+--.+..-+..+. ..+.....+....
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnps-igg~~kg~L~~Eidalg----g~m~~~aD~~~i~~~ 75 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPS-IGGIAKGHLVREIDALG----GLMGRAADETGIHFR 75 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSE-EESTTHHHHHHHHHHTT-----SHHHHHHHHEEEEE
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhh-hccccccchhHHHhhhh----hHHHHHHhHhhhhhh
Confidence 8999999999999999999999999999 33342233333221 00001111111111111 0111111111110
Q ss_pred -ccCCcceEEEecCceechHHHHHHHHHHHHH-CCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEc
Q 008503 150 -KDRSLKGAVVYYDGQMNDSRLNVGLALTAAL-AGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNA 227 (563)
Q Consensus 150 -~~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~-~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~A 227 (563)
.+..-..+....-.++|...+...+.+.+.+ .+++++ ..+|++|..++ ++|.||.. .+| ..+.|+.||+|
T Consensus 76 ~lN~skGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~-~~~V~~l~~e~--~~v~GV~~---~~g--~~~~a~~vVla 147 (392)
T PF01134_consen 76 MLNRSKGPAVHALRAQVDRDKYSRAMREKLESHPNLTII-QGEVTDLIVEN--GKVKGVVT---KDG--EEIEADAVVLA 147 (392)
T ss_dssp EESTTS-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEE-ES-EEEEEECT--TEEEEEEE---TTS--EEEEECEEEE-
T ss_pred cccccCCCCccchHhhccHHHHHHHHHHHHhcCCCeEEE-EcccceEEecC--CeEEEEEe---CCC--CEEecCEEEEe
Confidence 1111001111223468888999888888877 567876 57999998876 79999976 345 48999999999
Q ss_pred cCcChh
Q 008503 228 AGPFCD 233 (563)
Q Consensus 228 tG~~s~ 233 (563)
||.|..
T Consensus 148 TGtfl~ 153 (392)
T PF01134_consen 148 TGTFLN 153 (392)
T ss_dssp TTTGBT
T ss_pred cccccC
Confidence 999554
No 145
>PTZ00367 squalene epoxidase; Provisional
Probab=99.07 E-value=5.7e-09 Score=113.60 Aligned_cols=158 Identities=20% Similarity=0.242 Sum_probs=91.0
Q ss_pred CCccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCC--CccccchhhHHHHhhccCcccHHHHHHHHHHhh
Q 008503 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRST--KLIHGGVRYLEKAVFNLDYGQLKLVFHALEERK 147 (563)
Q Consensus 70 ~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~ 147 (563)
.++||+|||||++|+++|+.|++.|++|+|+||...... .+.. .+.+++.+.+++. .. .+.+.+..
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~~~~~--~r~~G~~L~p~g~~~L~~L----GL------~d~l~~i~ 99 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDLFSKP--DRIVGELLQPGGVNALKEL----GM------EECAEGIG 99 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccccccc--chhhhhhcCHHHHHHHHHC----CC------hhhHhhcC
Confidence 568999999999999999999999999999999752110 1111 2333444444432 10 11111111
Q ss_pred hc-------ccCCcceEEEec---Cc-eechHHHHHHHHHHH---HHCCCEEEcCcEEEEEEEcCCC--CcEEEEEEEEC
Q 008503 148 QA-------KDRSLKGAVVYY---DG-QMNDSRLNVGLALTA---ALAGAAVLNHAEVISLIKDEAS--NRIIGARIRNN 211 (563)
Q Consensus 148 ~~-------~~~~~~~~~~~~---~~-~~~~~~l~~~l~~~a---~~~G~~i~~~~~v~~l~~~~~~--g~v~gv~~~d~ 211 (563)
.. ...+......+. .+ .++-.++...|.+.+ ...|++++. ..|+++..++.+ .++.+|++...
T Consensus 100 ~~~~~~~v~~~~G~~~~i~~~~~~~g~~~~rg~~~~~Lr~~a~~~~~~~V~v~~-~~v~~l~~~~~~~~~~v~gV~~~~~ 178 (567)
T PTZ00367 100 MPCFGYVVFDHKGKQVKLPYGAGASGVSFHFGDFVQNLRSHVFHNCQDNVTMLE-GTVNSLLEEGPGFSERAYGVEYTEA 178 (567)
T ss_pred cceeeeEEEECCCCEEEecCCCCCceeEeEHHHHHHHHHHHHHhhcCCCcEEEE-eEEEEeccccCccCCeeEEEEEecC
Confidence 00 000000001111 11 123345666676665 346899965 578888665421 24778877642
Q ss_pred CCC--------------------cEEEEEeCeEEEccCcChhhhhhhhcC
Q 008503 212 LSG--------------------KEFDTYAKVVVNAAGPFCDSVRKLADQ 241 (563)
Q Consensus 212 ~~g--------------------~~~~i~A~~VI~AtG~~s~~l~~~~g~ 241 (563)
..+ ...+++||.||.|+|.+|. +++.++.
T Consensus 179 ~~~~~~~~~f~~~~~~~~~~~~~~g~~~~AdLvVgADG~~S~-vR~~l~~ 227 (567)
T PTZ00367 179 EKYDVPENPFREDPPSANPSATTVRKVATAPLVVMCDGGMSK-FKSRYQH 227 (567)
T ss_pred CcccccccccccccccccccccccceEEEeCEEEECCCcchH-HHHHccC
Confidence 210 1357999999999999985 5555543
No 146
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=99.06 E-value=1.8e-09 Score=114.93 Aligned_cols=155 Identities=17% Similarity=0.137 Sum_probs=89.5
Q ss_pred EECCchHHHHHHHHHHHCCCcEEEEeccCC--CCCCccCCCCccc---cchhhHHH------Hhhcc----C-cccHH--
Q 008503 76 VIGGGATGCGVALDAATRGLRVGLVEREDF--SSGTSSRSTKLIH---GGVRYLEK------AVFNL----D-YGQLK-- 137 (563)
Q Consensus 76 IIGaGiaG~~~A~~la~~G~~V~llEk~~~--~~g~s~~~~~~~~---~g~~~~~~------~~~~~----~-~~~~~-- 137 (563)
|||+|++|+++|++|++.|++|+||||.+. .+|++..+.++.. .+..+... .+.++ . ..+..
T Consensus 1 VVG~G~AGl~AA~~Aa~~Ga~V~vlEK~~~~~~Gg~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~ 80 (432)
T TIGR02485 1 VIGGGLAGLCAAIEARRAGASVLLLEAAPRARRGGNARHGRNIRVAHDIPTDFQRDSYPAEEFERDLAPVTGGRTNESLS 80 (432)
T ss_pred CCcccHHHHHHHHHHHhCCCcEEEEeCCCCCcCCcCcccccchhhcccchhhhhhhhccHHHHHHHHHHhhCCCCCHHHH
Confidence 799999999999999999999999999863 2344432222111 11111110 00000 0 00001
Q ss_pred --------HHHHHHHHhhhcccCCcceEEEecCcee----chHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEE
Q 008503 138 --------LVFHALEERKQAKDRSLKGAVVYYDGQM----NDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIG 205 (563)
Q Consensus 138 --------~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~g 205 (563)
...+++.+.+........+.+.+....+ ....++..|.+.+++.|++|+++++|++|..++++++|.+
T Consensus 81 ~~~~~~s~~~i~wl~~~Gv~f~~~~~g~~~~~~~~~~~~~~g~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~g 160 (432)
T TIGR02485 81 RLGIGRGSRDLRWAFAHGVHLQPPAAGNLPYSRRTAFLRGGGKALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDG 160 (432)
T ss_pred HHHHhcchhHHHHHHhCCceeeecCCCCccccCceeeecCCHHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEE
Confidence 1123333322211000000000000000 1346788888999999999999999999987631268888
Q ss_pred EEEEECCCCcEEEEEeCeEEEccCcChhh
Q 008503 206 ARIRNNLSGKEFDTYAKVVVNAAGPFCDS 234 (563)
Q Consensus 206 v~~~d~~~g~~~~i~A~~VI~AtG~~s~~ 234 (563)
|... ++ ...++||.||+|||.++.+
T Consensus 161 v~~~---~~-~~~i~ak~VIlAtGG~~~n 185 (432)
T TIGR02485 161 PLTT---VG-THRITTQALVLAAGGLGAN 185 (432)
T ss_pred EEEc---CC-cEEEEcCEEEEcCCCcccC
Confidence 8653 22 2578999999999998753
No 147
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=99.04 E-value=5.2e-09 Score=111.49 Aligned_cols=70 Identities=24% Similarity=0.309 Sum_probs=51.8
Q ss_pred cCceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccCcChhhhhh
Q 008503 161 YDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRK 237 (563)
Q Consensus 161 ~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~~s~~l~~ 237 (563)
+..++|...+...|.+.|.+.|++++.+ .|+++..+++ |.|.+|+. .+| .+++||+||.|+|-.+....+
T Consensus 147 ~ayhlDR~~fd~~L~~~A~~~Gv~~~~g-~V~~v~~~~~-g~i~~v~~---~~g--~~i~ad~~IDASG~~s~L~~~ 216 (454)
T PF04820_consen 147 YAYHLDRAKFDQFLRRHAEERGVEVIEG-TVVDVELDED-GRITAVRL---DDG--RTIEADFFIDASGRRSLLARK 216 (454)
T ss_dssp -EEEEEHHHHHHHHHHHHHHTT-EEEET--EEEEEE-TT-SEEEEEEE---TTS--EEEEESEEEE-SGGG-CCCCC
T ss_pred eeEEEeHHHHHHHHHHHHhcCCCEEEeC-EEEEEEEcCC-CCEEEEEE---CCC--CEEEEeEEEECCCccchhhHh
Confidence 4456899999999999999999999987 5888887765 78888876 334 589999999999986654333
No 148
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=99.03 E-value=3.9e-09 Score=113.62 Aligned_cols=147 Identities=24% Similarity=0.328 Sum_probs=90.0
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEeccC-CCCCCccC-CCCccccchhhHHHHhhccCcccHH-HHHHHHHHhh-
Q 008503 72 LDILVIGGGATGCGVALDAATRGLRVGLVERED-FSSGTSSR-STKLIHGGVRYLEKAVFNLDYGQLK-LVFHALEERK- 147 (563)
Q Consensus 72 ~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~-~~~g~s~~-~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~l~~~~- 147 (563)
|||+|||||++|+.+|..+++.|.+|+|||++. ..+..++. +.+.+..|. +.+ +++ .+. .+.+......
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~-l~r----Eid--aLGG~~~~~~d~~~i 73 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGPAKGI-LVK----EID--ALGGLMGKAADKAGL 73 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCccccccccccch-hhh----hhh--cccchHHHHHHhhce
Confidence 799999999999999999999999999999973 22221211 111111111 011 110 000 0011111110
Q ss_pred --hcccCCcceEEEecCceechHHHHHHHHHHHHHC-CCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeE
Q 008503 148 --QAKDRSLKGAVVYYDGQMNDSRLNVGLALTAALA-GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVV 224 (563)
Q Consensus 148 --~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~-G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~V 224 (563)
...+.....+.....+++|+..+...+.+.+++. |++++. ..|+.+..+++ +++.+|.+. +| ..+.|+.|
T Consensus 74 ~~r~ln~skgpAV~~~RaQVDr~~y~~~L~e~Le~~pgV~Ile-~~Vv~li~e~~-g~V~GV~t~---~G--~~I~Ad~V 146 (617)
T TIGR00136 74 QFRVLNSSKGPAVRATRAQIDKVLYRKAMRNALENQPNLSLFQ-GEVEDLILEDN-DEIKGVVTQ---DG--LKFRAKAV 146 (617)
T ss_pred eheecccCCCCcccccHHhCCHHHHHHHHHHHHHcCCCcEEEE-eEEEEEEEecC-CcEEEEEEC---CC--CEEECCEE
Confidence 0011111222222237899999999999888887 677765 47888876533 688888763 34 37999999
Q ss_pred EEccCcCh
Q 008503 225 VNAAGPFC 232 (563)
Q Consensus 225 I~AtG~~s 232 (563)
|+|||.|.
T Consensus 147 ILATGtfL 154 (617)
T TIGR00136 147 IITTGTFL 154 (617)
T ss_pred EEccCccc
Confidence 99999995
No 149
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=99.01 E-value=4.1e-09 Score=114.19 Aligned_cols=59 Identities=20% Similarity=0.370 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccCcChh
Q 008503 168 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 233 (563)
Q Consensus 168 ~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~~s~ 233 (563)
..++..|.+.++++|++|+++++|++|..++ +++++|++. +|+ ++.|+.||+|+|+|..
T Consensus 229 ~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~--~~~~gv~~~---~g~--~~~ad~vV~a~~~~~~ 287 (493)
T TIGR02730 229 GQIAESLVKGLEKHGGQIRYRARVTKIILEN--GKAVGVKLA---DGE--KIYAKRIVSNATRWDT 287 (493)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeeeEEEecC--CcEEEEEeC---CCC--EEEcCEEEECCChHHH
Confidence 4678889999999999999999999998765 678888763 343 6899999999998753
No 150
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=99.01 E-value=6.9e-09 Score=107.48 Aligned_cols=66 Identities=21% Similarity=0.246 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccCcC-hhhhhhh
Q 008503 168 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPF-CDSVRKL 238 (563)
Q Consensus 168 ~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~~-s~~l~~~ 238 (563)
.++...|.+.++++|++++.+++|+++..++ +++++|.+. ++....++||.||+|+|+| |..+...
T Consensus 263 ~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~--~~v~~V~t~---~g~~~~l~AD~vVLAaGaw~S~gL~a~ 329 (419)
T TIGR03378 263 IRLEEALKHRFEQLGGVMLPGDRVLRAEFEG--NRVTRIHTR---NHRDIPLRADHFVLASGSFFSNGLVAE 329 (419)
T ss_pred HHHHHHHHHHHHHCCCEEEECcEEEEEEeeC--CeEEEEEec---CCccceEECCEEEEccCCCcCHHHHhh
Confidence 4688889999999999999999999998775 578777542 2223579999999999999 8877554
No 151
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=99.00 E-value=1.2e-08 Score=109.05 Aligned_cols=67 Identities=16% Similarity=0.124 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCC--CCcEEEEEEEECCCCcEEE-EEeCeEEEccCcChhh
Q 008503 168 SRLNVGLALTAALAGAAVLNHAEVISLIKDEA--SNRIIGARIRNNLSGKEFD-TYAKVVVNAAGPFCDS 234 (563)
Q Consensus 168 ~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~--~g~v~gv~~~d~~~g~~~~-i~A~~VI~AtG~~s~~ 234 (563)
..++..|.+.++++|++|+++++|++|..+.+ .++|+||.+.....++... ..+|.||+++|.+.+.
T Consensus 226 eSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTnGs~t~n 295 (576)
T PRK13977 226 ESLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVTNGSITES 295 (576)
T ss_pred hHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEeCCcCccc
Confidence 45778899999999999999999999988522 2579999886312222223 3469999999998765
No 152
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.99 E-value=5.9e-09 Score=99.00 Aligned_cols=135 Identities=21% Similarity=0.175 Sum_probs=72.8
Q ss_pred EEECCchHHHHHHHHHHHCCCc-EEEEeccCCCCCCccC---CCCccccchhhHHHHhhccCcccHHHHHHHHHHhhhcc
Q 008503 75 LVIGGGATGCGVALDAATRGLR-VGLVEREDFSSGTSSR---STKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQAK 150 (563)
Q Consensus 75 vIIGaGiaG~~~A~~la~~G~~-V~llEk~~~~~g~s~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 150 (563)
+|||||++|+++|..|.++|.+ |+|||+++-.+|.... +..+..+......-.+..+....... ..+.
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~---- 72 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDD----SPEW---- 72 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHH----HHHH----
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCccccccccc----CCCC----
Confidence 6999999999999999999999 9999999644443221 11111111100000000000000000 0000
Q ss_pred cCCcceEEEecCceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccCc
Q 008503 151 DRSLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGP 230 (563)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~ 230 (563)
..........++...+...+++.+++++++++|+++.++++ + |.|.+ .++ .+++|+.||+|+|.
T Consensus 73 --------~~~~~~~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~--~-w~v~~---~~~--~~~~a~~VVlAtG~ 136 (203)
T PF13738_consen 73 --------RWPHDFPSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGD--G-WTVTT---RDG--RTIRADRVVLATGH 136 (203)
T ss_dssp --------HHSBSSEBHHHHHHHHHHHHHHTTGGEETS--EEEEEEETT--T-EEEEE---TTS---EEEEEEEEE---S
T ss_pred --------CCCcccCCHHHHHHHHHHHHhhcCcccccCCEEEEEEEecc--E-EEEEE---Eec--ceeeeeeEEEeeec
Confidence 00111234456667777778889999999999999999864 3 55655 334 47889999999998
Q ss_pred Chh
Q 008503 231 FCD 233 (563)
Q Consensus 231 ~s~ 233 (563)
++.
T Consensus 137 ~~~ 139 (203)
T PF13738_consen 137 YSH 139 (203)
T ss_dssp SCS
T ss_pred cCC
Confidence 653
No 153
>PRK06475 salicylate hydroxylase; Provisional
Probab=98.98 E-value=4.4e-09 Score=110.95 Aligned_cols=153 Identities=22% Similarity=0.203 Sum_probs=91.5
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhhhc--
Q 008503 72 LDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQA-- 149 (563)
Q Consensus 72 ~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 149 (563)
-+|+|||||++|+++|+.|+++|++|+|+||.+.. ...++...+...+.+.+.+.. +.+.+...+..
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~-~~~g~gi~l~~~~~~~L~~~G----------l~~~l~~~~~~~~ 71 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQEL-SEVGAGLQLAPNAMRHLERLG----------VADRLSGTGVTPK 71 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcc-CcCCccceeChhHHHHHHHCC----------ChHHHhhcccCcc
Confidence 47999999999999999999999999999998521 122232333334444444320 01111111100
Q ss_pred ----cc-CCcceEE----------Eec--CceechHHHHHHHHHHHHH-CCCEEEcCcEEEEEEEcCCCCcEEEEEEEEC
Q 008503 150 ----KD-RSLKGAV----------VYY--DGQMNDSRLNVGLALTAAL-AGAAVLNHAEVISLIKDEASNRIIGARIRNN 211 (563)
Q Consensus 150 ----~~-~~~~~~~----------~~~--~~~~~~~~l~~~l~~~a~~-~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~ 211 (563)
.. ....... .+. ...++...+...|.+.+.+ .|++++++++|+++..++ +.+ .+++.+
T Consensus 72 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~--~~v-~v~~~~- 147 (400)
T PRK06475 72 ALYLMDGRKARPLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQTG--NSI-TATIIR- 147 (400)
T ss_pred eEEEecCCCcceEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCcEEEECCEEEEEecCC--Cce-EEEEEe-
Confidence 00 0000000 000 0134566788888887766 489999999999998764 343 343432
Q ss_pred CCCcEEEEEeCeEEEccCcChhhhhhhhcC
Q 008503 212 LSGKEFDTYAKVVVNAAGPFCDSVRKLADQ 241 (563)
Q Consensus 212 ~~g~~~~i~A~~VI~AtG~~s~~l~~~~g~ 241 (563)
.++ ...+.||.||.|+|.+|. +++..+.
T Consensus 148 ~~~-~~~~~adlvIgADG~~S~-vR~~~~~ 175 (400)
T PRK06475 148 TNS-VETVSAAYLIACDGVWSM-LRAKAGF 175 (400)
T ss_pred CCC-CcEEecCEEEECCCccHh-HHhhcCC
Confidence 122 246899999999999995 4554443
No 154
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=98.96 E-value=9.9e-09 Score=109.45 Aligned_cols=148 Identities=20% Similarity=0.122 Sum_probs=85.6
Q ss_pred CCccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCc------cccchhhHHHHhhccCcccHHHHHHHH
Q 008503 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKL------IHGGVRYLEKAVFNLDYGQLKLVFHAL 143 (563)
Q Consensus 70 ~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~------~~~g~~~~~~~~~~~~~~~~~~~~~~l 143 (563)
...+|+|||||++|+++|.+|.+.|++|+|+|+++-.+|....+... +.++.... ...+++.+
T Consensus 9 ~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~-----------~s~~Y~~L 77 (461)
T PLN02172 9 NSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIV-----------HSSVYESL 77 (461)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCccc-----------chhhhhhh
Confidence 35799999999999999999999999999999997544543221100 00000000 00111111
Q ss_pred HHhhhc---ccCCcce--EEE----ecCceechHHHHHHHHHHHHHCCCE--EEcCcEEEEEEEcCCCCcEEEEEEEECC
Q 008503 144 EERKQA---KDRSLKG--AVV----YYDGQMNDSRLNVGLALTAALAGAA--VLNHAEVISLIKDEASNRIIGARIRNNL 212 (563)
Q Consensus 144 ~~~~~~---~~~~~~~--~~~----~~~~~~~~~~l~~~l~~~a~~~G~~--i~~~~~v~~l~~~~~~g~v~gv~~~d~~ 212 (563)
..+... ...++.. .+. ..........+...|...+...|+. ++++++|+++...+ ..|.|...+ .
T Consensus 78 ~tn~p~~~m~f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~---~~w~V~~~~-~ 153 (461)
T PLN02172 78 RTNLPRECMGYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVD---GKWRVQSKN-S 153 (461)
T ss_pred hccCCHhhccCCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecC---CeEEEEEEc-C
Confidence 110000 0000000 000 0001122356777788888888987 89999999998764 335565543 2
Q ss_pred CCcEEEEEeCeEEEccCcCh
Q 008503 213 SGKEFDTYAKVVVNAAGPFC 232 (563)
Q Consensus 213 ~g~~~~i~A~~VI~AtG~~s 232 (563)
++...+..+|.||+|+|.++
T Consensus 154 ~~~~~~~~~d~VIvAtG~~~ 173 (461)
T PLN02172 154 GGFSKDEIFDAVVVCNGHYT 173 (461)
T ss_pred CCceEEEEcCEEEEeccCCC
Confidence 22333567899999999875
No 155
>PRK07236 hypothetical protein; Provisional
Probab=98.95 E-value=1.9e-08 Score=105.69 Aligned_cols=155 Identities=19% Similarity=0.107 Sum_probs=80.6
Q ss_pred CCCccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhhh
Q 008503 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQ 148 (563)
Q Consensus 69 ~~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 148 (563)
+..+||+|||||++|+++|+.|++.|++|+|+||.+......+....+.+.+.+.+++. .................
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~l----g~~~~~~~~~~~~~~~~ 79 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEA----GVALPADIGVPSRERIY 79 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHc----CCCcccccccCccceEE
Confidence 34589999999999999999999999999999998522111111111112233333321 10000000000000000
Q ss_pred cccCC-cceEEEecCceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEc
Q 008503 149 AKDRS-LKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNA 227 (563)
Q Consensus 149 ~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~A 227 (563)
....+ ...........+....+...|.+.. .+++++++++|++++.+++ .|. |.+ .+|+ +++||.||.|
T Consensus 80 ~~~~g~~~~~~~~~~~~~~~~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~--~v~-v~~---~~g~--~~~ad~vIgA 149 (386)
T PRK07236 80 LDRDGRVVQRRPMPQTQTSWNVLYRALRAAF--PAERYHLGETLVGFEQDGD--RVT-ARF---ADGR--RETADLLVGA 149 (386)
T ss_pred EeCCCCEeeccCCCccccCHHHHHHHHHHhC--CCcEEEcCCEEEEEEecCC--eEE-EEE---CCCC--EEEeCEEEEC
Confidence 00000 0000000000112223334443322 3568999999999987753 332 443 3343 7899999999
Q ss_pred cCcChhhhhh
Q 008503 228 AGPFCDSVRK 237 (563)
Q Consensus 228 tG~~s~~l~~ 237 (563)
.|.+|.....
T Consensus 150 DG~~S~vR~~ 159 (386)
T PRK07236 150 DGGRSTVRAQ 159 (386)
T ss_pred CCCCchHHHH
Confidence 9999964333
No 156
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.90 E-value=2e-08 Score=101.29 Aligned_cols=112 Identities=24% Similarity=0.307 Sum_probs=75.9
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhhhccc
Q 008503 72 LDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQAKD 151 (563)
Q Consensus 72 ~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 151 (563)
|||+|||||++|+++|..|++.|++|+|+|+++.+ |. +.... .+. ..
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~g-g~------~~~~~--~~~------------------------~~ 47 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGMEPG-GQ------LTTTT--EVE------------------------NY 47 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCC-cc------eeecc--ccc------------------------cc
Confidence 69999999999999999999999999999998632 21 00000 000 00
Q ss_pred CCcceEEEecCceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccCcC
Q 008503 152 RSLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPF 231 (563)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~~ 231 (563)
+.+ ...+.+..+...+.+.+.+.|+++++ ++|+++..++ ..+.|.. .++ .++++|.||+|+|.+
T Consensus 48 ~~~-------~~~~~~~~~~~~l~~~~~~~gv~~~~-~~v~~v~~~~---~~~~v~~---~~~--~~~~~d~liiAtG~~ 111 (300)
T TIGR01292 48 PGF-------PEGISGPELMEKMKEQAVKFGAEIIY-EEVIKVDLSD---RPFKVKT---GDG--KEYTAKAVIIATGAS 111 (300)
T ss_pred CCC-------CCCCChHHHHHHHHHHHHHcCCeEEE-EEEEEEEecC---CeeEEEe---CCC--CEEEeCEEEECCCCC
Confidence 000 01123345666777778889999998 8999988764 2223432 223 379999999999985
Q ss_pred h
Q 008503 232 C 232 (563)
Q Consensus 232 s 232 (563)
.
T Consensus 112 ~ 112 (300)
T TIGR01292 112 A 112 (300)
T ss_pred c
Confidence 4
No 157
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.89 E-value=1.8e-08 Score=97.42 Aligned_cols=157 Identities=22% Similarity=0.274 Sum_probs=94.1
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEeccC-CCCCCccCCCCccccchhhHHHH--------hhc--c---Ccc-cH-
Q 008503 73 DILVIGGGATGCGVALDAATRGLRVGLVERED-FSSGTSSRSTKLIHGGVRYLEKA--------VFN--L---DYG-QL- 136 (563)
Q Consensus 73 DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~-~~~g~s~~~~~~~~~g~~~~~~~--------~~~--~---~~~-~~- 136 (563)
-|||||+|.+|++++..+-..|-.|+|+|+.. +++.+..+++|+-..+....+.. +.. + ... ..
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNSiKAsSGINgA~TetQ~~~~i~Dsp~lf~~Dtl~saksk~~~e 90 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNSIKASSGINGAGTETQEKLHIKDSPELFVKDTLSSAKSKGVPE 90 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCcceecccCcCCCchhhhhhcccccChHHHhhhhhhhcccCCcHH
Confidence 59999999999999999999888899999985 55444455666654443322211 000 0 000 00
Q ss_pred ---------HHHHHHHHHhhhcc---cCCcceEEEe----cCceech-HHHHHHHHHH----HHHC--CCEEEcCcEEEE
Q 008503 137 ---------KLVFHALEERKQAK---DRSLKGAVVY----YDGQMND-SRLNVGLALT----AALA--GAAVLNHAEVIS 193 (563)
Q Consensus 137 ---------~~~~~~l~~~~~~~---~~~~~~~~~~----~~~~~~~-~~l~~~l~~~----a~~~--G~~i~~~~~v~~ 193 (563)
....+++..+..+. -..+.+.-.+ ..+.+.| .+++.+|... +.++ -++|..+++|++
T Consensus 91 Lm~~La~~S~~AvewL~~ef~lkld~la~lgGHSvpRTHr~s~plppgfei~~~L~~~l~k~as~~pe~~ki~~nskvv~ 170 (477)
T KOG2404|consen 91 LMEKLAANSASAVEWLRGEFDLKLDLLAQLGGHSVPRTHRSSGPLPPGFEIVKALSTRLKKKASENPELVKILLNSKVVD 170 (477)
T ss_pred HHHHHHhcCHHHHHHHhhhcccchHHHHHhcCCCCCcccccCCCCCCchHHHHHHHHHHHHhhhcChHHHhhhhcceeee
Confidence 11233333322220 0000010011 1122222 2344444433 3333 378999999999
Q ss_pred EEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccCcCh
Q 008503 194 LIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 232 (563)
Q Consensus 194 l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~~s 232 (563)
|..++ |+|.||...| .+|+...+.++.||+|+|.|+
T Consensus 171 il~n~--gkVsgVeymd-~sgek~~~~~~~VVlatGGf~ 206 (477)
T KOG2404|consen 171 ILRNN--GKVSGVEYMD-ASGEKSKIIGDAVVLATGGFG 206 (477)
T ss_pred eecCC--CeEEEEEEEc-CCCCccceecCceEEecCCcC
Confidence 99654 8999999988 677767889999999999875
No 158
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.88 E-value=1.5e-08 Score=109.13 Aligned_cols=56 Identities=29% Similarity=0.319 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccCc
Q 008503 168 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGP 230 (563)
Q Consensus 168 ~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~ 230 (563)
..++.+|.+.++++|++|+++++|++|..++ |+.++++. ..+ ..+++|.||.+...
T Consensus 224 ~al~~aL~~~~~~~Gg~I~~~~~V~~I~v~~--g~g~~~~~---~~g--~~~~ad~vv~~~~~ 279 (487)
T COG1233 224 GALVDALAELAREHGGEIRTGAEVSQILVEG--GKGVGVRT---SDG--ENIEADAVVSNADP 279 (487)
T ss_pred HHHHHHHHHHHHHcCCEEECCCceEEEEEeC--CcceEEec---ccc--ceeccceeEecCch
Confidence 3688899999999999999999999999886 45434432 223 47889999988887
No 159
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=98.88 E-value=2.9e-08 Score=108.54 Aligned_cols=68 Identities=21% Similarity=0.157 Sum_probs=50.9
Q ss_pred HHHHHHHH-HCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccCc-ChhhhhhhhcCC
Q 008503 172 VGLALTAA-LAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGP-FCDSVRKLADQN 242 (563)
Q Consensus 172 ~~l~~~a~-~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~-~s~~l~~~~g~~ 242 (563)
..++..+. +.|++|+.++.|++|..++ ++++||++.+ ..+....+.+|.||+|+|+ ++..|+...|..
T Consensus 197 ~~~l~~a~~r~nl~i~~~~~V~rI~~~~--~ra~GV~~~~-~~~~~~~~~ak~VIlaAGai~SP~LLl~SGIG 266 (532)
T TIGR01810 197 RAYLHPAMKRPNLEVQTRAFVTKINFEG--NRATGVEFKK-GGRKEHTEANKEVILSAGAINSPQLLQLSGIG 266 (532)
T ss_pred HHHhhhhccCCCeEEEeCCEEEEEEecC--CeEEEEEEEe-CCcEEEEEEeeeEEEccCCCCCHHHHHhcCCC
Confidence 34444454 5679999999999999874 6899998865 2222234578999999998 788888777765
No 160
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=98.87 E-value=3.6e-08 Score=108.13 Aligned_cols=155 Identities=19% Similarity=0.242 Sum_probs=88.9
Q ss_pred CCCccEEEECCchHHHHHHHHHHHCCCcEEEEeccCC---CCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHH
Q 008503 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDF---SSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEE 145 (563)
Q Consensus 69 ~~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~---~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~ 145 (563)
...++|+||||||+|+++|+.|+++|++|+|+||.+. ..|..++...+...+++.+++. ... +.+.+.+
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~~~~r~~G~~~~~I~L~pngl~aLe~L----Gl~----~~e~l~~ 150 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDLSAIRGEGKYRGPIQIQSNALAALEAI----DID----VAEQVME 150 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccccccccccccCcccccCHHHHHHHHHc----Ccc----hHHHHHh
Confidence 4568999999999999999999999999999999741 1111112222333455555432 100 0111111
Q ss_pred hhhc-------ccCCcceEE----E----------ecCceechHHHHHHHHHHHHHCCC-EEEcCcEEEEEEEcCCCCcE
Q 008503 146 RKQA-------KDRSLKGAV----V----------YYDGQMNDSRLNVGLALTAALAGA-AVLNHAEVISLIKDEASNRI 203 (563)
Q Consensus 146 ~~~~-------~~~~~~~~~----~----------~~~~~~~~~~l~~~l~~~a~~~G~-~i~~~~~v~~l~~~~~~g~v 203 (563)
.+.. ......+.+ . +....+....+...|.+. .+. .++++++|+++..++ +.|
T Consensus 151 ~g~~~~~~i~~~~d~~~G~~~~~~~~~~~~~~~g~p~~~~I~R~~L~~~L~~a---lg~~~i~~g~~V~~I~~~~--d~V 225 (668)
T PLN02927 151 AGCITGDRINGLVDGISGSWYVKFDTFTPAASRGLPVTRVISRMTLQQILARA---VGEDVIRNESNVVDFEDSG--DKV 225 (668)
T ss_pred hcCcccceeeeeeecCCCceEeeccccccccccCCCeEEEEeHHHHHHHHHhh---CCCCEEEcCCEEEEEEEeC--CEE
Confidence 1100 000000000 0 001134555666666443 333 367889999998765 344
Q ss_pred EEEEEEECCCCcEEEEEeCeEEEccCcChhhhhhhhcCC
Q 008503 204 IGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQN 242 (563)
Q Consensus 204 ~gv~~~d~~~g~~~~i~A~~VI~AtG~~s~~l~~~~g~~ 242 (563)
+ |.+ .++ .++.++.||.|+|.||.....+.+..
T Consensus 226 t-V~~---~dG--~ti~aDlVVGADG~~S~vR~~l~g~~ 258 (668)
T PLN02927 226 T-VVL---ENG--QRYEGDLLVGADGIWSKVRNNLFGRS 258 (668)
T ss_pred E-EEE---CCC--CEEEcCEEEECCCCCcHHHHHhcCCC
Confidence 3 433 234 36899999999999997666665543
No 161
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.87 E-value=4.3e-08 Score=103.19 Aligned_cols=147 Identities=24% Similarity=0.217 Sum_probs=81.9
Q ss_pred EEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCC-Cc---cccc-h-hhHHHHhhc-------cCcccHHHHHH
Q 008503 75 LVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRST-KL---IHGG-V-RYLEKAVFN-------LDYGQLKLVFH 141 (563)
Q Consensus 75 vIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~-~~---~~~g-~-~~~~~~~~~-------~~~~~~~~~~~ 141 (563)
+|||||++|+++|+.|+++|++|+|+||++..++....+. +. .+.. . .+....... +.........+
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~sG~grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~ 80 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYPRNGKFLRSALSRFSNKDLID 80 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccccccCCceEEccCCCcchhHHHhcCCCcHHHHHHHHhCCHHHHHH
Confidence 6999999999999999999999999999864332211111 11 1110 0 000000000 00000111222
Q ss_pred HHHHhhhcccCCcceEEEecCceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEe
Q 008503 142 ALEERKQAKDRSLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYA 221 (563)
Q Consensus 142 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A 221 (563)
.+.+.+......-.+.+.+. .-....+...+.+.+++.|++++++++|+++..++ + .+.|.. ++ .++.+
T Consensus 81 ~~~~~Gv~~~~~~~g~~~p~--~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~--~-~~~v~~----~~--~~i~a 149 (400)
T TIGR00275 81 FFESLGLELKVEEDGRVFPC--SDSAADVLDALLNELKELGVEILTNSKVKSIKKDD--N-GFGVET----SG--GEYEA 149 (400)
T ss_pred HHHHcCCeeEEecCCEeECC--CCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecC--C-eEEEEE----CC--cEEEc
Confidence 23222221000000111111 11235677888888889999999999999997654 2 334433 22 36899
Q ss_pred CeEEEccCcCh
Q 008503 222 KVVVNAAGPFC 232 (563)
Q Consensus 222 ~~VI~AtG~~s 232 (563)
|.||+|+|.++
T Consensus 150 d~VIlAtG~~s 160 (400)
T TIGR00275 150 DKVILATGGLS 160 (400)
T ss_pred CEEEECCCCcc
Confidence 99999999876
No 162
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=1.5e-08 Score=101.62 Aligned_cols=116 Identities=23% Similarity=0.297 Sum_probs=78.2
Q ss_pred CCccEEEECCchHHHHHHHHHHHCCCc-EEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhhh
Q 008503 70 NPLDILVIGGGATGCGVALDAATRGLR-VGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQ 148 (563)
Q Consensus 70 ~~~DVvIIGaGiaG~~~A~~la~~G~~-V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 148 (563)
..|||+|||||++|+++|.++++++++ ++|+|+...+ |...... .++
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~g-g~~~~~~-~ve------------------------------ 49 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPG-GQLTKTT-DVE------------------------------ 49 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcC-Cccccce-eec------------------------------
Confidence 468999999999999999999999999 6666665433 2111110 000
Q ss_pred cccCCcceEEEecCceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEcc
Q 008503 149 AKDRSLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAA 228 (563)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~At 228 (563)
.+.-..+.+....+...+.+.+...|+++.. ..|..+...+ ....|. |++ .+++||.||+||
T Consensus 50 --------nypg~~~~~~g~~L~~~~~~~a~~~~~~~~~-~~v~~v~~~~---~~F~v~-----t~~-~~~~ak~vIiAt 111 (305)
T COG0492 50 --------NYPGFPGGILGPELMEQMKEQAEKFGVEIVE-DEVEKVELEG---GPFKVK-----TDK-GTYEAKAVIIAT 111 (305)
T ss_pred --------CCCCCccCCchHHHHHHHHHHHhhcCeEEEE-EEEEEEeecC---ceEEEE-----ECC-CeEEEeEEEECc
Confidence 1111223355677888888889899999988 6777776653 133332 222 249999999999
Q ss_pred CcChhhh
Q 008503 229 GPFCDSV 235 (563)
Q Consensus 229 G~~s~~l 235 (563)
|.....+
T Consensus 112 G~~~~~~ 118 (305)
T COG0492 112 GAGARKL 118 (305)
T ss_pred CCcccCC
Confidence 9866543
No 163
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.85 E-value=6.4e-07 Score=102.15 Aligned_cols=101 Identities=17% Similarity=0.185 Sum_probs=73.0
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhhhccc
Q 008503 72 LDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQAKD 151 (563)
Q Consensus 72 ~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 151 (563)
-.++|||||..|+-+|..|++.|.+|.|||+.+.... .
T Consensus 146 k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~-----------------~------------------------- 183 (847)
T PRK14989 146 KRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMA-----------------E------------------------- 183 (847)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccchh-----------------h-------------------------
Confidence 4699999999999999999999999999998741000 0
Q ss_pred CCcceEEEecCceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccCcC
Q 008503 152 RSLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPF 231 (563)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~~ 231 (563)
++ +......+.+.+++.|+++++++.+.++..++. +.+..|.+ .+|+ ++.+|.||+|+|.-
T Consensus 184 ------------~l-d~~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~-~~~~~v~~---~dG~--~i~~D~Vv~A~G~r 244 (847)
T PRK14989 184 ------------QL-DQMGGEQLRRKIESMGVRVHTSKNTLEIVQEGV-EARKTMRF---ADGS--ELEVDFIVFSTGIR 244 (847)
T ss_pred ------------hc-CHHHHHHHHHHHHHCCCEEEcCCeEEEEEecCC-CceEEEEE---CCCC--EEEcCEEEECCCcc
Confidence 00 112223556667789999999999999976532 33445544 3443 69999999999965
Q ss_pred hh
Q 008503 232 CD 233 (563)
Q Consensus 232 s~ 233 (563)
.+
T Consensus 245 Pn 246 (847)
T PRK14989 245 PQ 246 (847)
T ss_pred cC
Confidence 43
No 164
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=98.85 E-value=7.3e-08 Score=95.46 Aligned_cols=62 Identities=15% Similarity=0.187 Sum_probs=52.3
Q ss_pred hHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccCc
Q 008503 167 DSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGP 230 (563)
Q Consensus 167 ~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~ 230 (563)
+.++...+.+.+.+.|..|+++|+|+....+++ |.| -|.+.+..+++..+++||.+++|.|-
T Consensus 251 D~Eisk~~qr~L~kQgikF~l~tkv~~a~~~~d-g~v-~i~ve~ak~~k~~tle~DvlLVsiGR 312 (506)
T KOG1335|consen 251 DGEISKAFQRVLQKQGIKFKLGTKVTSATRNGD-GPV-EIEVENAKTGKKETLECDVLLVSIGR 312 (506)
T ss_pred CHHHHHHHHHHHHhcCceeEeccEEEEeeccCC-Cce-EEEEEecCCCceeEEEeeEEEEEccC
Confidence 456777777778889999999999999999876 544 67888878888889999999999994
No 165
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.82 E-value=3.5e-08 Score=108.16 Aligned_cols=113 Identities=22% Similarity=0.265 Sum_probs=75.5
Q ss_pred CCccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhhhc
Q 008503 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQA 149 (563)
Q Consensus 70 ~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 149 (563)
..|||+|||||++|+++|+.|+++|++|+|||++.++ |.......+.
T Consensus 3 ~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~~G-G~~~~~~~i~-------------------------------- 49 (555)
T TIGR03143 3 EIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDDFG-GQITITSEVV-------------------------------- 49 (555)
T ss_pred CcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCC-ceEEeccccc--------------------------------
Confidence 3599999999999999999999999999999997543 2111000000
Q ss_pred ccCCcceEEEecCceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccC
Q 008503 150 KDRSLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAG 229 (563)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG 229 (563)
.+ +....+.+..+...+.+.+.+.|++++ +++|+.+..++ .++.|.. .+ ..+.++.||+|||
T Consensus 50 ---~~-----pg~~~~~~~~l~~~l~~~~~~~gv~~~-~~~V~~i~~~~---~~~~V~~---~~---g~~~a~~lVlATG 111 (555)
T TIGR03143 50 ---NY-----PGILNTTGPELMQEMRQQAQDFGVKFL-QAEVLDVDFDG---DIKTIKT---AR---GDYKTLAVLIATG 111 (555)
T ss_pred ---cC-----CCCcCCCHHHHHHHHHHHHHHcCCEEe-ccEEEEEEecC---CEEEEEe---cC---CEEEEeEEEECCC
Confidence 00 000112344566677777888899986 67888887653 3333432 12 2588999999999
Q ss_pred cChh
Q 008503 230 PFCD 233 (563)
Q Consensus 230 ~~s~ 233 (563)
.+..
T Consensus 112 a~p~ 115 (555)
T TIGR03143 112 ASPR 115 (555)
T ss_pred CccC
Confidence 9653
No 166
>PLN02612 phytoene desaturase
Probab=98.81 E-value=1.7e-06 Score=95.08 Aligned_cols=58 Identities=14% Similarity=0.061 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccCcC
Q 008503 168 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPF 231 (563)
Q Consensus 168 ~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~~ 231 (563)
..+...|.+..++.|++|+++++|++|..+++ +.+++|++ .+| ..+.||.||.|+...
T Consensus 308 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~-g~v~~v~~---~~G--~~~~ad~VI~a~p~~ 365 (567)
T PLN02612 308 ERLCMPIVDHFQSLGGEVRLNSRIKKIELNDD-GTVKHFLL---TNG--SVVEGDVYVSATPVD 365 (567)
T ss_pred HHHHHHHHHHHHhcCCEEEeCCeeeEEEECCC-CcEEEEEE---CCC--cEEECCEEEECCCHH
Confidence 56778888888889999999999999998765 56666665 234 368999999999753
No 167
>PRK02106 choline dehydrogenase; Validated
Probab=98.80 E-value=1.3e-07 Score=104.10 Aligned_cols=60 Identities=17% Similarity=0.266 Sum_probs=46.4
Q ss_pred HCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccCcC-hhhhhhhhcCC
Q 008503 180 LAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPF-CDSVRKLADQN 242 (563)
Q Consensus 180 ~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~~-s~~l~~~~g~~ 242 (563)
..+++|+.++.|++|..++ ++++||++.+ ..+....+.+|.||+|+|++ +..|+...|+.
T Consensus 213 ~~nl~i~~~a~V~rI~~~~--~~a~GV~~~~-~~~~~~~~~ak~VILaaGai~TP~LLl~SGIG 273 (560)
T PRK02106 213 RPNLTIVTHALTDRILFEG--KRAVGVEYER-GGGRETARARREVILSAGAINSPQLLQLSGIG 273 (560)
T ss_pred CCCcEEEcCCEEEEEEEeC--CeEEEEEEEe-CCcEEEEEeeeeEEEccCCCCCHHHHhhcCCC
Confidence 4579999999999999874 6899999876 33333456889999999986 56666666654
No 168
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=98.79 E-value=5.6e-08 Score=103.25 Aligned_cols=135 Identities=19% Similarity=0.208 Sum_probs=81.0
Q ss_pred CCCccEEEECCchHHHHHHHHHHHCCCc-EEEEeccCCCCCCccCCCCccccchhhH-HHHhhccCcccHHHHHHHHHHh
Q 008503 69 SNPLDILVIGGGATGCGVALDAATRGLR-VGLVEREDFSSGTSSRSTKLIHGGVRYL-EKAVFNLDYGQLKLVFHALEER 146 (563)
Q Consensus 69 ~~~~DVvIIGaGiaG~~~A~~la~~G~~-V~llEk~~~~~g~s~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~l~~~ 146 (563)
...+||+|||||++|+++|+.|.++|.. ++|+||++-.+|+...+. ..+++.- ......+++..
T Consensus 6 ~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~r---y~~l~~~~p~~~~~~~~~p----------- 71 (443)
T COG2072 6 ATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNR---YPGLRLDSPKWLLGFPFLP----------- 71 (443)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhcc---CCceEECCchheeccCCCc-----------
Confidence 5678999999999999999999999999 999999974455433220 1111000 00000000000
Q ss_pred hhcccCCcceEEEecCceechHH-HHHHHHHHHHHCCC--EEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCe
Q 008503 147 KQAKDRSLKGAVVYYDGQMNDSR-LNVGLALTAALAGA--AVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKV 223 (563)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~-l~~~l~~~a~~~G~--~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~ 223 (563)
+. ......+.. +-..+...+.+.+. ++.+++.|..+..+++ +..|.|++.+ +...++.|+.
T Consensus 72 -------~~-----~~~~~~~~~~~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~-~~~w~V~~~~---~~~~~~~a~~ 135 (443)
T COG2072 72 -------FR-----WDEAFAPFAEIKDYIKDYLEKYGLRFQIRFNTRVEVADWDED-TKRWTVTTSD---GGTGELTADF 135 (443)
T ss_pred -------cC-----CcccCCCcccHHHHHHHHHHHcCceeEEEcccceEEEEecCC-CCeEEEEEcC---CCeeeEecCE
Confidence 00 011111111 33344555556553 5677777777777665 5688887754 2222388999
Q ss_pred EEEccCcChh
Q 008503 224 VVNAAGPFCD 233 (563)
Q Consensus 224 VI~AtG~~s~ 233 (563)
||+|||.++.
T Consensus 136 vV~ATG~~~~ 145 (443)
T COG2072 136 VVVATGHLSE 145 (443)
T ss_pred EEEeecCCCC
Confidence 9999999764
No 169
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.77 E-value=1.1e-07 Score=103.45 Aligned_cols=114 Identities=25% Similarity=0.426 Sum_probs=79.6
Q ss_pred CCCccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhhh
Q 008503 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQ 148 (563)
Q Consensus 69 ~~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 148 (563)
...|||+|||||++|+++|.+|++.|++|+|+++. + +|....+.++ +
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~-~-GG~~~~~~~~-~------------------------------ 255 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER-F-GGQVLDTMGI-E------------------------------ 255 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC-C-CCeeeccCcc-c------------------------------
Confidence 45799999999999999999999999999999875 2 2221111000 0
Q ss_pred cccCCcceEEEecCceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEcc
Q 008503 149 AKDRSLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAA 228 (563)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~At 228 (563)
.+. .+ -...+..+...+.+.+.+.|++++++++|+++..+++ .+.|.+ .++ .++.++.||+||
T Consensus 256 ----~~~-~~----~~~~~~~l~~~l~~~~~~~gv~i~~~~~V~~I~~~~~---~~~V~~---~~g--~~i~a~~vViAt 318 (517)
T PRK15317 256 ----NFI-SV----PETEGPKLAAALEEHVKEYDVDIMNLQRASKLEPAAG---LIEVEL---ANG--AVLKAKTVILAT 318 (517)
T ss_pred ----ccC-CC----CCCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCC---eEEEEE---CCC--CEEEcCEEEECC
Confidence 000 00 0134456777888888899999999999999987642 233433 234 368999999999
Q ss_pred CcCh
Q 008503 229 GPFC 232 (563)
Q Consensus 229 G~~s 232 (563)
|...
T Consensus 319 G~~~ 322 (517)
T PRK15317 319 GARW 322 (517)
T ss_pred CCCc
Confidence 9854
No 170
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=98.75 E-value=2.1e-07 Score=99.85 Aligned_cols=65 Identities=14% Similarity=0.111 Sum_probs=49.2
Q ss_pred hHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccCcCh
Q 008503 167 DSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 232 (563)
Q Consensus 167 ~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~~s 232 (563)
+..+...+.+.+++.|++|+++++|++|..+++ +++++|++.+...++..++.||.||.|+.+..
T Consensus 212 ~~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~-~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~~~ 276 (453)
T TIGR02731 212 PERLCQPIVDYITSRGGEVRLNSRLKEIVLNED-GSVKHFVLADGEGQRRFEVTADAYVSAMPVDI 276 (453)
T ss_pred hHHHHHHHHHHHHhcCCEEeCCCeeEEEEECCC-CCEEEEEEecCCCCceeEEECCEEEEcCCHHH
Confidence 356778888888889999999999999987654 67888887542111222689999999998743
No 171
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=98.74 E-value=1.7e-07 Score=99.30 Aligned_cols=149 Identities=15% Similarity=0.153 Sum_probs=84.0
Q ss_pred cEEEECCchHHHHHHHHHHHCC-CcEEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHH---Hhhh
Q 008503 73 DILVIGGGATGCGVALDAATRG-LRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALE---ERKQ 148 (563)
Q Consensus 73 DVvIIGaGiaG~~~A~~la~~G-~~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~---~~~~ 148 (563)
+|+|||||++|+++|+.|++.| ++|+|+||.+-. +..+..-.+...+.+.+.+... . ..+........ ....
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~-~~~G~gi~l~~~~~~~L~~lg~--~-~~~~~~~~~~~~~~~~~~ 77 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAF-GEVGAGVSFGANAVRAIVGLGL--G-EAYTQVADSTPAPWQDIW 77 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcC-CCCccceeeCccHHHHHHHcCC--h-hHHHHHhcCCCccCccee
Confidence 6999999999999999999998 599999998522 1223223333445555544210 0 00000000000 0000
Q ss_pred c--cc---CCcceE-EEecC--ceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEE
Q 008503 149 A--KD---RSLKGA-VVYYD--GQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTY 220 (563)
Q Consensus 149 ~--~~---~~~~~~-~~~~~--~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~ 220 (563)
. .. ...... ..+.. ..++...+...|.+.+. +..++++++|+++..+++ .+ .|.. .++. ++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~--~~~v~~~~~v~~i~~~~~--~~-~v~~---~~g~--~~~ 147 (414)
T TIGR03219 78 FEWRNGSDASYLGATIAPGVGQSSVHRADFLDALLKHLP--EGIASFGKRATQIEEQAE--EV-QVLF---TDGT--EYR 147 (414)
T ss_pred EEEEecCccceeeeeccccCCcccCCHHHHHHHHHHhCC--CceEEcCCEEEEEEecCC--cE-EEEE---cCCC--EEE
Confidence 0 00 000000 00111 13556667777776552 356889999999987653 33 3443 2343 689
Q ss_pred eCeEEEccCcChhhh
Q 008503 221 AKVVVNAAGPFCDSV 235 (563)
Q Consensus 221 A~~VI~AtG~~s~~l 235 (563)
+|.||.|+|.+|...
T Consensus 148 ad~vVgADG~~S~vR 162 (414)
T TIGR03219 148 CDLLIGADGIKSALR 162 (414)
T ss_pred eeEEEECCCccHHHH
Confidence 999999999999643
No 172
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.73 E-value=1.8e-07 Score=100.64 Aligned_cols=41 Identities=39% Similarity=0.585 Sum_probs=35.9
Q ss_pred CCCccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCC
Q 008503 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGT 109 (563)
Q Consensus 69 ~~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~ 109 (563)
+..|||+|||||++|+.+|+.|+++|++|+|||+++..+|+
T Consensus 3 ~~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~ 43 (461)
T PRK05249 3 MYDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGG 43 (461)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCEEEEEecccccccc
Confidence 56799999999999999999999999999999997433443
No 173
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=98.73 E-value=9.5e-08 Score=103.94 Aligned_cols=57 Identities=25% Similarity=0.223 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccCcC
Q 008503 168 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPF 231 (563)
Q Consensus 168 ~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~~ 231 (563)
..+...|.+.++++|++|+++++|++|..++ +++++|++. ++ .++.|+.||+|++..
T Consensus 219 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~--~~~~~V~~~---~g--~~~~ad~VI~a~~~~ 275 (502)
T TIGR02734 219 GALVAAMAKLAEDLGGELRLNAEVIRIETEG--GRATAVHLA---DG--ERLDADAVVSNADLH 275 (502)
T ss_pred HHHHHHHHHHHHHCCCEEEECCeEEEEEeeC--CEEEEEEEC---CC--CEEECCEEEECCcHH
Confidence 4678888899999999999999999998775 577788653 34 368999999999864
No 174
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=98.72 E-value=3e-07 Score=96.46 Aligned_cols=61 Identities=20% Similarity=0.214 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccCcChh
Q 008503 168 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 233 (563)
Q Consensus 168 ~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~~s~ 233 (563)
.++...|.+.+++.|++++++++|+++..++ +++..+.. .+++...+.||.||+|+|.+..
T Consensus 259 ~rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~--~~V~~v~~---~~g~~~~i~AD~VVLAtGrf~s 319 (422)
T PRK05329 259 LRLQNALRRAFERLGGRIMPGDEVLGAEFEG--GRVTAVWT---RNHGDIPLRARHFVLATGSFFS 319 (422)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEeC--CEEEEEEe---eCCceEEEECCEEEEeCCCccc
Confidence 3567778888889999999999999998765 46655542 2344567999999999998653
No 175
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=98.72 E-value=3.9e-08 Score=98.21 Aligned_cols=159 Identities=19% Similarity=0.194 Sum_probs=94.6
Q ss_pred CCCccEEEECCchHHHHHHHHHHHC------CCcEEEEeccCCCCCCccCCCCccccchhhHHHHh---hccCcccHHHH
Q 008503 69 SNPLDILVIGGGATGCGVALDAATR------GLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAV---FNLDYGQLKLV 139 (563)
Q Consensus 69 ~~~~DVvIIGaGiaG~~~A~~la~~------G~~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~---~~~~~~~~~~~ 139 (563)
..++||+|||||++|+++|..|.+. .++|+|+||....+|.+- +..++.++. +.+.+ .+....-...+
T Consensus 74 ~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~Gghtl-SGaviep~a--ldEL~P~wke~~apl~t~v 150 (621)
T KOG2415|consen 74 SEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTL-SGAVIEPGA--LDELLPDWKEDGAPLNTPV 150 (621)
T ss_pred hccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCcee-cceeeccch--hhhhCcchhhcCCcccccc
Confidence 4679999999999999999998653 679999999975444332 222332221 11110 00000000000
Q ss_pred H-H---HHHHhhhcccCCcceEEE-ecCceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEEC---
Q 008503 140 F-H---ALEERKQAKDRSLKGAVV-YYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNN--- 211 (563)
Q Consensus 140 ~-~---~l~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~--- 211 (563)
. + .+.....+.-+.. ..+. .....+.-..++.+|.+.|++.|++|..+..+..+..+++ |.|.||...|.
T Consensus 151 T~d~~~fLt~~~~i~vPv~-~pm~NhGNYvv~L~~~v~wLg~kAEe~GvEiyPg~aaSevly~ed-gsVkGiaT~D~GI~ 228 (621)
T KOG2415|consen 151 TSDKFKFLTGKGRISVPVP-SPMDNHGNYVVSLGQLVRWLGEKAEELGVEIYPGFAASEVLYDED-GSVKGIATNDVGIS 228 (621)
T ss_pred cccceeeeccCceeecCCC-cccccCCcEEEEHHHHHHHHHHHHHhhCceeccccchhheeEcCC-CcEeeEeecccccc
Confidence 0 0 0000000000000 0000 0122345568899999999999999999999999999887 89999987652
Q ss_pred CCC-------cEEEEEeCeEEEccCcCh
Q 008503 212 LSG-------KEFDTYAKVVVNAAGPFC 232 (563)
Q Consensus 212 ~~g-------~~~~i~A~~VI~AtG~~s 232 (563)
.+| +..++.|+..|.|-|...
T Consensus 229 k~G~pKd~FerGme~hak~TifAEGc~G 256 (621)
T KOG2415|consen 229 KDGAPKDTFERGMEFHAKVTIFAEGCHG 256 (621)
T ss_pred CCCCccccccccceecceeEEEeccccc
Confidence 112 234789999999988653
No 176
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=98.72 E-value=1.3e-07 Score=92.01 Aligned_cols=36 Identities=31% Similarity=0.497 Sum_probs=33.5
Q ss_pred CCCccEEEECCchHHHHHHHHHHHCCCcEEEEeccC
Q 008503 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (563)
Q Consensus 69 ~~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~ 104 (563)
..++||+|||+|.+|+.+|.+|+.+|.+|+++|+..
T Consensus 3 ~~~~dvivvgaglaglvaa~elA~aG~~V~ildQEg 38 (552)
T COG3573 3 GLTADVIVVGAGLAGLVAAAELADAGKRVLILDQEG 38 (552)
T ss_pred cccccEEEECccHHHHHHHHHHHhcCceEEEEcccc
Confidence 457899999999999999999999999999999873
No 177
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=98.71 E-value=1.8e-07 Score=96.37 Aligned_cols=159 Identities=21% Similarity=0.221 Sum_probs=98.3
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccch---h-----hHHHHh--hccCc-ccH-----
Q 008503 73 DILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGV---R-----YLEKAV--FNLDY-GQL----- 136 (563)
Q Consensus 73 DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~---~-----~~~~~~--~~~~~-~~~----- 136 (563)
||+|||+|++||++|+.|++. ++|+||-|.+...++|....|-+...+ + +..... ..+.. ...
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~~~sS~~AQGGIAa~~~~~Ds~~~Hv~DTL~AG~glcD~~aV~~iv~ 87 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLGESSSYWAQGGIAAALSEDDSPELHVADTLAAGAGLCDEEAVEFIVS 87 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCCCccchhhcCceEeeeCCCCCHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 999999999999999999998 999999999876665555443332111 0 000000 00110 011
Q ss_pred --HHHHHHHHHhhhcccCCcceEEE-------------ecCceechHHHHHHHHHHHHH-CCCEEEcCcEEEEEEEcCCC
Q 008503 137 --KLVFHALEERKQAKDRSLKGAVV-------------YYDGQMNDSRLNVGLALTAAL-AGAAVLNHAEVISLIKDEAS 200 (563)
Q Consensus 137 --~~~~~~l~~~~~~~~~~~~~~~~-------------~~~~~~~~~~l~~~l~~~a~~-~G~~i~~~~~v~~l~~~~~~ 200 (563)
....+.|.+.+........+.+. ...+ .-...+...|.+.+.+ .+++++.++.+.+|..+++
T Consensus 88 ~~~~ai~~Li~~Gv~FDr~~~g~~~lt~EggHS~rRIlH~~~-~TG~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~~~- 165 (518)
T COG0029 88 EAPEAIEWLIDLGVPFDRDEDGRLHLTREGGHSRRRILHAAD-ATGKEIMTALLKKVRNRPNITVLEGAEALDLIIEDG- 165 (518)
T ss_pred hHHHHHHHHHHcCCCCcCCCCCceeeeeecccCCceEEEecC-CccHHHHHHHHHHHhcCCCcEEEecchhhhhhhcCC-
Confidence 12233344433331111111111 1111 2345677788888776 6999999999999998863
Q ss_pred CcEEEEEEEECCCCcEEEEEeCeEEEccCcChhhh
Q 008503 201 NRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSV 235 (563)
Q Consensus 201 g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~~s~~l 235 (563)
..+.||.+.+. .++...+.|+.||+|||..+...
T Consensus 166 ~~~~Gv~~~~~-~~~~~~~~a~~vVLATGG~g~ly 199 (518)
T COG0029 166 IGVAGVLVLNR-NGELGTFRAKAVVLATGGLGGLY 199 (518)
T ss_pred ceEeEEEEecC-CCeEEEEecCeEEEecCCCcccc
Confidence 25669988763 22467899999999999876543
No 178
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=98.70 E-value=1e-07 Score=102.57 Aligned_cols=52 Identities=29% Similarity=0.418 Sum_probs=43.2
Q ss_pred HCCCEEEcCcEEEEEEEcCCC-CcEEEEEEEECCCCcEEEEEeCeEEEccCcC
Q 008503 180 LAGAAVLNHAEVISLIKDEAS-NRIIGARIRNNLSGKEFDTYAKVVVNAAGPF 231 (563)
Q Consensus 180 ~~G~~i~~~~~v~~l~~~~~~-g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~~ 231 (563)
..+++++.++.|++|..++++ ++|++|.+.|..+++..+++||.||+|+|+-
T Consensus 226 ~~n~~l~~~a~v~~i~~d~~~~~~v~~v~~~d~~~g~~~~v~A~~vVLAagaI 278 (544)
T TIGR02462 226 SERFTLLTNHRCTRLVRNETNESEIEAALVRDLLSGDRFEIKADVYVLACGAV 278 (544)
T ss_pred CCCEEEEcCCEEEEEEeCCCCCceeEEEEEEECCCCcEEEEECCEEEEccCch
Confidence 345999999999999987642 4799999988556777889999999999963
No 179
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=98.70 E-value=2.3e-07 Score=90.32 Aligned_cols=59 Identities=24% Similarity=0.205 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccCcCh
Q 008503 169 RLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 232 (563)
Q Consensus 169 ~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~~s 232 (563)
++...|...+++.|+.+..+-+|.+....+ ++|+.|.+++ .....++|+..|+|+|.|-
T Consensus 259 Rl~~~L~~~f~~~Gg~~m~Gd~V~~a~~~~--~~v~~i~trn---~~diP~~a~~~VLAsGsff 317 (421)
T COG3075 259 RLHNQLQRQFEQLGGLWMPGDEVKKATCKG--GRVTEIYTRN---HADIPLRADFYVLASGSFF 317 (421)
T ss_pred hHHHHHHHHHHHcCceEecCCceeeeeeeC--CeEEEEEecc---cccCCCChhHeeeeccccc
Confidence 566777888899999999999999998776 6898887763 3346899999999999874
No 180
>PRK07208 hypothetical protein; Provisional
Probab=98.70 E-value=4.3e-07 Score=98.20 Aligned_cols=62 Identities=23% Similarity=0.192 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccCcC
Q 008503 168 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPF 231 (563)
Q Consensus 168 ~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~~ 231 (563)
..+...|.+.+.+.|++|+++++|++|..+++ +.++.+...+ .+|....+.||.||.|+.++
T Consensus 218 ~~l~~~L~~~l~~~g~~i~~~~~V~~I~~~~~-~~v~~~~~~~-~~g~~~~~~ad~VI~a~p~~ 279 (479)
T PRK07208 218 GQLWETAAEKLEALGGKVVLNAKVVGLHHDGD-GRIAVVVVND-TDGTEETVTADQVISSMPLR 279 (479)
T ss_pred chHHHHHHHHHHHcCCEEEeCCEEEEEEEcCC-cEEEEEEEEc-CCCCEEEEEcCEEEECCCHH
Confidence 35777888888889999999999999998764 4454444432 23444568999999998865
No 181
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.68 E-value=1.8e-06 Score=98.34 Aligned_cols=98 Identities=21% Similarity=0.262 Sum_probs=72.2
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhhhccc
Q 008503 72 LDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQAKD 151 (563)
Q Consensus 72 ~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 151 (563)
-.|+|||||.+|+-+|..|++.|.+|.|||+.+.... .
T Consensus 141 k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~-----------------~------------------------- 178 (785)
T TIGR02374 141 KKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMA-----------------K------------------------- 178 (785)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchhh-----------------h-------------------------
Confidence 4799999999999999999999999999998641100 0
Q ss_pred CCcceEEEecCceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccCcC
Q 008503 152 RSLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPF 231 (563)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~~ 231 (563)
.++ ......+.+..++.|+++++++.++++..+ +++.+|.+. +|. ++.+|.||.|+|.-
T Consensus 179 ------------~ld-~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~---~~~~~v~~~---dG~--~i~~D~Vi~a~G~~ 237 (785)
T TIGR02374 179 ------------QLD-QTAGRLLQRELEQKGLTFLLEKDTVEIVGA---TKADRIRFK---DGS--SLEADLIVMAAGIR 237 (785)
T ss_pred ------------hcC-HHHHHHHHHHHHHcCCEEEeCCceEEEEcC---CceEEEEEC---CCC--EEEcCEEEECCCCC
Confidence 001 112234555667899999999999998754 456666653 343 79999999999965
Q ss_pred h
Q 008503 232 C 232 (563)
Q Consensus 232 s 232 (563)
.
T Consensus 238 P 238 (785)
T TIGR02374 238 P 238 (785)
T ss_pred c
Confidence 3
No 182
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.68 E-value=3.2e-07 Score=99.84 Aligned_cols=114 Identities=26% Similarity=0.400 Sum_probs=77.8
Q ss_pred CCCccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhhh
Q 008503 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQ 148 (563)
Q Consensus 69 ~~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 148 (563)
...|||+|||||++|+++|..|++.|++|+|+|+. + +|......+ ++
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~-~-GG~~~~~~~-~~------------------------------ 256 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAER-I-GGQVKDTVG-IE------------------------------ 256 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC-C-CCccccCcC-cc------------------------------
Confidence 45699999999999999999999999999999753 2 222110000 00
Q ss_pred cccCCcceEEEecCceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEcc
Q 008503 149 AKDRSLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAA 228 (563)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~At 228 (563)
.+. .+ ......++...+.+.+.+.|++++.+++|+++..+++ .+.|.+ .++. .+.++.||+|+
T Consensus 257 ----~~~-~~----~~~~~~~l~~~l~~~l~~~gv~i~~~~~V~~I~~~~~---~~~v~~---~~g~--~i~~d~lIlAt 319 (515)
T TIGR03140 257 ----NLI-SV----PYTTGSQLAANLEEHIKQYPIDLMENQRAKKIETEDG---LIVVTL---ESGE--VLKAKSVIVAT 319 (515)
T ss_pred ----ccc-cc----CCCCHHHHHHHHHHHHHHhCCeEEcCCEEEEEEecCC---eEEEEE---CCCC--EEEeCEEEECC
Confidence 000 00 0123456667777888888999999999999987642 223333 2343 69999999999
Q ss_pred CcCh
Q 008503 229 GPFC 232 (563)
Q Consensus 229 G~~s 232 (563)
|...
T Consensus 320 Ga~~ 323 (515)
T TIGR03140 320 GARW 323 (515)
T ss_pred CCCc
Confidence 9853
No 183
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.68 E-value=2.4e-07 Score=98.95 Aligned_cols=47 Identities=32% Similarity=0.415 Sum_probs=37.5
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCcc
Q 008503 71 PLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLI 117 (563)
Q Consensus 71 ~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~ 117 (563)
+|||+|||||++|+++|..|+++|++|+|+||.+...|.++.|.+.+
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~~~gci 49 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCINIGCI 49 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeeecCccc
Confidence 69999999999999999999999999999999852223234444443
No 184
>PLN02785 Protein HOTHEAD
Probab=98.68 E-value=2.9e-07 Score=100.98 Aligned_cols=67 Identities=18% Similarity=0.245 Sum_probs=47.0
Q ss_pred HHHHHHCCCEEEcCcEEEEEEEcCCC--CcEEEEEEEECCCCcEEEE-----EeCeEEEccCcC-hhhhhhhhcCC
Q 008503 175 ALTAALAGAAVLNHAEVISLIKDEAS--NRIIGARIRNNLSGKEFDT-----YAKVVVNAAGPF-CDSVRKLADQN 242 (563)
Q Consensus 175 ~~~a~~~G~~i~~~~~v~~l~~~~~~--g~v~gv~~~d~~~g~~~~i-----~A~~VI~AtG~~-s~~l~~~~g~~ 242 (563)
...+...+++++.++.|++|..++++ ++++||++.+ .+|...++ .++.||+|+|+. +..++...|+.
T Consensus 227 ~~~~~~~nl~Vl~~a~V~rIl~~~~~~~~ra~GV~~~~-~~g~~~~~~~~~~~~~eVILsAGai~sP~lL~~SGIG 301 (587)
T PLN02785 227 LAAGNPNKLRVLLHATVQKIVFDTSGKRPRATGVIFKD-ENGNQHQAFLSNNKGSEIILSAGAIGSPQMLLLSGIG 301 (587)
T ss_pred HhhcCCCCeEEEeCCEEEEEEEcCCCCCceEEEEEEEE-CCCceEEEEeecccCceEEecccccCCHHHHHHcCCC
Confidence 34445578999999999999987531 3799999976 33433332 247899999975 56666666654
No 185
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.68 E-value=2.6e-07 Score=97.10 Aligned_cols=143 Identities=17% Similarity=0.124 Sum_probs=84.4
Q ss_pred CCccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCC--CCccccc-hhhHHHHhhccCcccHHHHHHHHHHh
Q 008503 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRS--TKLIHGG-VRYLEKAVFNLDYGQLKLVFHALEER 146 (563)
Q Consensus 70 ~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~--~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~l~~~ 146 (563)
..-+|+|||||++||++|++|.+.|+.|+++||.+--+|..... ....|.. ++-+. .+++ .+.+
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~---tn~p-------Ke~~--- 71 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLR---TNLP-------KEMM--- 71 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCcccccccchhhhhh---ccCC-------hhhh---
Confidence 35699999999999999999999999999999996444432211 1111221 11110 0000 0000
Q ss_pred hhcccCCcceEEEecCceech-HHHHHHHHHHHHHCCC--EEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCe
Q 008503 147 KQAKDRSLKGAVVYYDGQMND-SRLNVGLALTAALAGA--AVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKV 223 (563)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~~a~~~G~--~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~ 223 (563)
. .+++.-. ....-.+.+ .++...|...|+..+. .|.++++|..+....+ .-|.|...+..+. ..+.-+|.
T Consensus 72 -~--~~dfpf~-~~~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~--gkW~V~~~~~~~~-~~~~ifd~ 144 (448)
T KOG1399|consen 72 -G--YSDFPFP-ERDPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDK--GKWRVTTKDNGTQ-IEEEIFDA 144 (448)
T ss_pred -c--CCCCCCc-ccCcccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccC--CceeEEEecCCcc-eeEEEeeE
Confidence 0 0000000 000111122 3667777777777764 7899999998887642 2466766652222 35677899
Q ss_pred EEEccCcCh
Q 008503 224 VVNAAGPFC 232 (563)
Q Consensus 224 VI~AtG~~s 232 (563)
||+|+|.+.
T Consensus 145 VvVctGh~~ 153 (448)
T KOG1399|consen 145 VVVCTGHYV 153 (448)
T ss_pred EEEcccCcC
Confidence 999999995
No 186
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=98.67 E-value=3.2e-07 Score=99.53 Aligned_cols=62 Identities=16% Similarity=0.133 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccCcC
Q 008503 168 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPF 231 (563)
Q Consensus 168 ~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~~ 231 (563)
..+..+|.+.++++|++|+++++|++|..++ +++.+|++.+..++...++.||.||.++.+.
T Consensus 232 ~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~~--~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~ 293 (492)
T TIGR02733 232 QTLSDRLVEALKRDGGNLLTGQRVTAIHTKG--GRAGWVVVVDSRKQEDLNVKADDVVANLPPQ 293 (492)
T ss_pred HHHHHHHHHHHHhcCCEEeCCceEEEEEEeC--CeEEEEEEecCCCCceEEEECCEEEECCCHH
Confidence 4578888888888999999999999999875 5677787654222323478999999998874
No 187
>PRK14694 putative mercuric reductase; Provisional
Probab=98.67 E-value=3.3e-07 Score=98.69 Aligned_cols=50 Identities=38% Similarity=0.549 Sum_probs=41.1
Q ss_pred cCCCCccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccc
Q 008503 67 NNSNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIH 118 (563)
Q Consensus 67 ~~~~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~ 118 (563)
|....|||+|||||++|+++|..|++.|++|+|||++.+ +|+ +.|.|.++
T Consensus 2 ~~~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~~~-GGt-c~n~GciP 51 (468)
T PRK14694 2 MSDNNLHIAVIGSGGSAMAAALKATERGARVTLIERGTI-GGT-CVNIGCVP 51 (468)
T ss_pred CCCCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcccc-ccc-eecCCccc
Confidence 456789999999999999999999999999999999753 333 55655543
No 188
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=98.66 E-value=9.9e-07 Score=89.15 Aligned_cols=33 Identities=27% Similarity=0.605 Sum_probs=31.2
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEeccC
Q 008503 72 LDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (563)
Q Consensus 72 ~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~ 104 (563)
-+|+|||||++|+++|..|++.|++|+|+|+..
T Consensus 3 ~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e 35 (420)
T KOG2614|consen 3 PKVVIVGGGIVGLATALALHRKGIDVVVLESRE 35 (420)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCeEEEEeecc
Confidence 489999999999999999999999999999973
No 189
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.66 E-value=3.2e-07 Score=98.75 Aligned_cols=47 Identities=30% Similarity=0.383 Sum_probs=38.3
Q ss_pred CCccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCcc
Q 008503 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLI 117 (563)
Q Consensus 70 ~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~ 117 (563)
.+|||+|||||++|+.+|..|+++|++|+|||+.+.-+|+ +.|.|.+
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~-c~n~gci 49 (471)
T PRK06467 3 IKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGV-CLNVGCI 49 (471)
T ss_pred ccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCccccc-ccCCCcc
Confidence 4699999999999999999999999999999997533333 4555444
No 190
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.66 E-value=3.3e-07 Score=98.63 Aligned_cols=35 Identities=43% Similarity=0.681 Sum_probs=33.4
Q ss_pred CCccEEEECCchHHHHHHHHHHHCCCcEEEEeccC
Q 008503 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (563)
Q Consensus 70 ~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~ 104 (563)
.+|||+|||||++|+++|..|+++|++|+|+|+..
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~ 37 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK 37 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc
Confidence 46999999999999999999999999999999986
No 191
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=98.65 E-value=2.6e-06 Score=90.21 Aligned_cols=60 Identities=20% Similarity=0.259 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccCcChh
Q 008503 168 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 233 (563)
Q Consensus 168 ~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~~s~ 233 (563)
..+...+.+.+...|++++++++|.+|..+++ +++++|+. .+| .+++|+.||.....+..
T Consensus 232 g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~-g~~~~V~~---~~G--e~i~a~~VV~~~s~~p~ 291 (443)
T PTZ00363 232 GGLPQAFSRLCAIYGGTYMLNTPVDEVVFDEN-GKVCGVKS---EGG--EVAKCKLVICDPSYFPD 291 (443)
T ss_pred HHHHHHHHHHHHHcCcEEEcCCeEEEEEEcCC-CeEEEEEE---CCC--cEEECCEEEECcccccc
Confidence 46778888888999999999999999988754 67777865 344 36899999987766644
No 192
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.65 E-value=2.4e-07 Score=99.12 Aligned_cols=47 Identities=28% Similarity=0.418 Sum_probs=38.5
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCcccc
Q 008503 71 PLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHG 119 (563)
Q Consensus 71 ~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~ 119 (563)
+|||+|||||++|+++|+.|+++|++|+|+|+..+ +| ++.|.|.++.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~-GG-~c~~~gciPs 48 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEPRV-GG-TCVIRGCVPK 48 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCcc-Cc-eeecCCcCch
Confidence 69999999999999999999999999999999643 33 4555555543
No 193
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=98.64 E-value=3.1e-07 Score=99.43 Aligned_cols=143 Identities=21% Similarity=0.150 Sum_probs=79.9
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhhhcccC
Q 008503 73 DILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQAKDR 152 (563)
Q Consensus 73 DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 152 (563)
.|+|||||++|+++|..|.+.|++|+++||++--+|....+...-.+....++....+..... .
T Consensus 3 rVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~----------------~ 66 (531)
T PF00743_consen 3 RVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEM----------------M 66 (531)
T ss_dssp EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGG----------------S
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchH----------------h
Confidence 599999999999999999999999999999975555432111000000000000000000000 0
Q ss_pred CcceEEEec--CceechHHHHHHHHHHHHHCCC--EEEcCcEEEEEEEcCCC--CcEEEEEEEECCCCcEEEEEeCeEEE
Q 008503 153 SLKGAVVYY--DGQMNDSRLNVGLALTAALAGA--AVLNHAEVISLIKDEAS--NRIIGARIRNNLSGKEFDTYAKVVVN 226 (563)
Q Consensus 153 ~~~~~~~~~--~~~~~~~~l~~~l~~~a~~~G~--~i~~~~~v~~l~~~~~~--g~v~gv~~~d~~~g~~~~i~A~~VI~ 226 (563)
.+..-..+. .-.....++...|...|+..+. .|+++|+|+++.+.++. ..-|.|+.. .+|+..+-..|.||+
T Consensus 67 ~fsdfp~p~~~p~f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~--~~g~~~~~~fD~Vvv 144 (531)
T PF00743_consen 67 AFSDFPFPEDYPDFPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTE--NDGKEETEEFDAVVV 144 (531)
T ss_dssp CCTTS-HCCCCSSSEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEET--TTTEEEEEEECEEEE
T ss_pred cCCCcCCCCCCCCCCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEee--cCCeEEEEEeCeEEE
Confidence 000000010 1123446677778888887775 68999999999886531 124555442 445544556799999
Q ss_pred ccCcChh
Q 008503 227 AAGPFCD 233 (563)
Q Consensus 227 AtG~~s~ 233 (563)
|+|.++.
T Consensus 145 atG~~~~ 151 (531)
T PF00743_consen 145 ATGHFSK 151 (531)
T ss_dssp EE-SSSC
T ss_pred cCCCcCC
Confidence 9999874
No 194
>PRK10262 thioredoxin reductase; Provisional
Probab=98.64 E-value=3e-07 Score=93.94 Aligned_cols=114 Identities=14% Similarity=0.177 Sum_probs=72.0
Q ss_pred CCCccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhhh
Q 008503 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQ 148 (563)
Q Consensus 69 ~~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 148 (563)
+..+||+|||||++|+++|..|+++|++|+++|+.+.+ |...... .++
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~~~g-g~~~~~~-~~~------------------------------ 51 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKG-GQLTTTT-EVE------------------------------ 51 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEeecCC-CceecCc-eEC------------------------------
Confidence 57899999999999999999999999999999976542 2111100 000
Q ss_pred cccCCcceEEEecCceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEcc
Q 008503 149 AKDRSLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAA 228 (563)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~At 228 (563)
.+.+ ....++...+...+.+.+...+.+++.+ .|+.+...+ +. +.+ .. +. ..+.+|.||+||
T Consensus 52 ----~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~v~~~~--~~-~~v--~~--~~--~~~~~d~vilAt 113 (321)
T PRK10262 52 ----NWPG----DPNDLTGPLLMERMHEHATKFETEIIFD-HINKVDLQN--RP-FRL--TG--DS--GEYTCDALIIAT 113 (321)
T ss_pred ----CCCC----CCCCCCHHHHHHHHHHHHHHCCCEEEee-EEEEEEecC--Ce-EEE--Ee--cC--CEEEECEEEECC
Confidence 0000 0001233344555666666778887775 577776653 22 222 21 11 258999999999
Q ss_pred CcCh
Q 008503 229 GPFC 232 (563)
Q Consensus 229 G~~s 232 (563)
|.+.
T Consensus 114 G~~~ 117 (321)
T PRK10262 114 GASA 117 (321)
T ss_pred CCCC
Confidence 9864
No 195
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.63 E-value=4e-07 Score=97.36 Aligned_cols=47 Identities=28% Similarity=0.398 Sum_probs=38.3
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCcc
Q 008503 71 PLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLI 117 (563)
Q Consensus 71 ~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~ 117 (563)
.|||+|||||++|+.+|+.|+++|++|+|||+.+...|.++.+.|.+
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~~gci 49 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCINIGCI 49 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEeecccc
Confidence 59999999999999999999999999999999853334444554443
No 196
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.62 E-value=3.5e-07 Score=97.91 Aligned_cols=47 Identities=34% Similarity=0.486 Sum_probs=38.2
Q ss_pred CCccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccc
Q 008503 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIH 118 (563)
Q Consensus 70 ~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~ 118 (563)
++|||+|||||++|+.+|+.|+++|++|+|+|+..+ |.++.|.|.+.
T Consensus 1 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~--GG~c~~~gciP 47 (450)
T TIGR01421 1 KHYDYLVIGGGSGGIASARRAAEHGAKALLVEAKKL--GGTCVNVGCVP 47 (450)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEeccccc--ccceeccCcCc
Confidence 369999999999999999999999999999999754 33344544443
No 197
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.62 E-value=7.3e-07 Score=96.13 Aligned_cols=46 Identities=33% Similarity=0.577 Sum_probs=38.3
Q ss_pred CCccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCcc
Q 008503 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLI 117 (563)
Q Consensus 70 ~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~ 117 (563)
..|||+|||||++|+.+|..|+++|++|+|||+..+ |.++.+.|.+
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~~--GG~c~~~gci 48 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKGKL--GGTCLHKGCI 48 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEEccCC--CcceEcCCcC
Confidence 479999999999999999999999999999999744 3345555544
No 198
>PRK06370 mercuric reductase; Validated
Probab=98.61 E-value=1.1e-06 Score=94.51 Aligned_cols=39 Identities=36% Similarity=0.553 Sum_probs=35.0
Q ss_pred CCCccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCC
Q 008503 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSS 107 (563)
Q Consensus 69 ~~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~ 107 (563)
..+|||+|||||++|+++|+.|+++|++|+|+|+..+++
T Consensus 3 ~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~~GG 41 (463)
T PRK06370 3 AQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERGLLGG 41 (463)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCeEEEEecCccCC
Confidence 346999999999999999999999999999999975543
No 199
>PLN02487 zeta-carotene desaturase
Probab=98.60 E-value=3.2e-05 Score=84.39 Aligned_cols=62 Identities=15% Similarity=0.076 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHCCCEEEcCcEEEEEEEcCC-CC--cEEEEEEEECCCCcEEEEEeCeEEEccCcCh
Q 008503 169 RLNVGLALTAALAGAAVLNHAEVISLIKDEA-SN--RIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 232 (563)
Q Consensus 169 ~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~-~g--~v~gv~~~d~~~g~~~~i~A~~VI~AtG~~s 232 (563)
.+...+.+..+++|++|++++.|.+|..+.+ ++ ++++|++.. .+....+.+|.||.|++.+.
T Consensus 296 ~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~--~~~~~~~~aD~VV~A~p~~~ 360 (569)
T PLN02487 296 RLSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSK--ATEKEIVKADAYVAACDVPG 360 (569)
T ss_pred HHHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEec--CCCceEEECCEEEECCCHHH
Confidence 4777888889999999999999999998742 12 488887742 22334688999999999874
No 200
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=98.60 E-value=3.7e-07 Score=92.41 Aligned_cols=59 Identities=29% Similarity=0.482 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccCcChh
Q 008503 168 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 233 (563)
Q Consensus 168 ~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~~s~ 233 (563)
..+..++++.+++.|++|.++..|.+|..++ |++.||.+. +| .+++++.||--++.|--
T Consensus 264 Gavs~aia~~~~~~GaeI~tka~Vq~Illd~--gka~GV~L~---dG--~ev~sk~VvSNAt~~~T 322 (561)
T KOG4254|consen 264 GAVSFAIAEGAKRAGAEIFTKATVQSILLDS--GKAVGVRLA---DG--TEVRSKIVVSNATPWDT 322 (561)
T ss_pred hHHHHHHHHHHHhccceeeehhhhhheeccC--CeEEEEEec---CC--cEEEeeeeecCCchHHH
Confidence 3577789999999999999999999999886 799999995 45 37888999988888753
No 201
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.58 E-value=7.4e-07 Score=95.85 Aligned_cols=47 Identities=32% Similarity=0.523 Sum_probs=37.7
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccc
Q 008503 71 PLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIH 118 (563)
Q Consensus 71 ~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~ 118 (563)
+|||+|||||++|+.+|..|+++|++|+|||+.+..+|+ +.|.|.++
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~-c~~~gciP 49 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGT-CLNVGCMP 49 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeee-eccCcccc
Confidence 599999999999999999999999999999985333333 44555544
No 202
>PRK13748 putative mercuric reductase; Provisional
Probab=98.57 E-value=8.5e-07 Score=97.85 Aligned_cols=47 Identities=34% Similarity=0.584 Sum_probs=38.6
Q ss_pred CCccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccc
Q 008503 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIH 118 (563)
Q Consensus 70 ~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~ 118 (563)
.+|||+|||||++|+.+|..|++.|++|+|||++.+ +| ++.|.|.++
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~~~-GG-~c~n~gciP 143 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERGTI-GG-TCVNVGCVP 143 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCcc-ee-eccccCccc
Confidence 469999999999999999999999999999999843 33 355555443
No 203
>PRK07233 hypothetical protein; Provisional
Probab=98.57 E-value=1e-06 Score=93.88 Aligned_cols=56 Identities=21% Similarity=0.256 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccCcC
Q 008503 168 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPF 231 (563)
Q Consensus 168 ~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~~ 231 (563)
..+...|.+.+.+.|++|+++++|++|..++ ++++.+.. ++ ..+.+|.||+|+...
T Consensus 198 ~~l~~~l~~~l~~~g~~v~~~~~V~~i~~~~--~~~~~~~~----~~--~~~~ad~vI~a~p~~ 253 (434)
T PRK07233 198 ATLIDALAEAIEARGGEIRLGTPVTSVVIDG--GGVTGVEV----DG--EEEDFDAVISTAPPP 253 (434)
T ss_pred HHHHHHHHHHHHhcCceEEeCCCeeEEEEcC--CceEEEEe----CC--ceEECCEEEECCCHH
Confidence 4577888888888999999999999998765 45544431 23 368999999999863
No 204
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=98.56 E-value=1.4e-07 Score=97.89 Aligned_cols=150 Identities=27% Similarity=0.272 Sum_probs=88.8
Q ss_pred CCccEEEECCchHHHHHHHHHHHCCCcEEEEecc-CCCCCCccCCC-CccccchhhHHHHhhccCcccHH-HHHHHHHHh
Q 008503 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVERE-DFSSGTSSRST-KLIHGGVRYLEKAVFNLDYGQLK-LVFHALEER 146 (563)
Q Consensus 70 ~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~-~~~~g~s~~~~-~~~~~g~~~~~~~~~~~~~~~~~-~~~~~l~~~ 146 (563)
..|||+|||||-+|+-+|+.+|+.|.+++|+--+ +.-+-.|++.+ |-+.-|. . ..+++. +. .+-....+.
T Consensus 3 ~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~-l----vrEIDA--LGG~Mg~~~D~~ 75 (621)
T COG0445 3 KEYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGH-L----VREIDA--LGGLMGKAADKA 75 (621)
T ss_pred CCCceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCcccce-e----EEeehh--ccchHHHhhhhc
Confidence 4599999999999999999999999999999877 32222333221 1110010 0 000000 00 000000011
Q ss_pred hhc---ccCCcceEEEecCceechHHHHHHHHHHHHH-CCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeC
Q 008503 147 KQA---KDRSLKGAVVYYDGQMNDSRLNVGLALTAAL-AGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAK 222 (563)
Q Consensus 147 ~~~---~~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~-~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~ 222 (563)
+.. ++.....++...-+++|-..+...+.+..+. .+..++. ..|.++..+++ .+|+||+.. +| ..+.|+
T Consensus 76 ~IQ~r~LN~sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q-~~v~dli~e~~-~~v~GV~t~---~G--~~~~a~ 148 (621)
T COG0445 76 GIQFRMLNSSKGPAVRAPRAQADKWLYRRAMKNELENQPNLHLLQ-GEVEDLIVEEG-QRVVGVVTA---DG--PEFHAK 148 (621)
T ss_pred CCchhhccCCCcchhcchhhhhhHHHHHHHHHHHHhcCCCceehH-hhhHHHhhcCC-CeEEEEEeC---CC--CeeecC
Confidence 100 1222223344445677777777777776655 3667655 57888887653 369999763 34 489999
Q ss_pred eEEEccCcChh
Q 008503 223 VVVNAAGPFCD 233 (563)
Q Consensus 223 ~VI~AtG~~s~ 233 (563)
.||++||.|-.
T Consensus 149 aVVlTTGTFL~ 159 (621)
T COG0445 149 AVVLTTGTFLR 159 (621)
T ss_pred EEEEeeccccc
Confidence 99999997753
No 205
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.56 E-value=9.6e-07 Score=70.36 Aligned_cols=77 Identities=27% Similarity=0.269 Sum_probs=60.8
Q ss_pred EEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhhhcccCC
Q 008503 74 ILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQAKDRS 153 (563)
Q Consensus 74 VvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 153 (563)
|+|||||.+|+-+|..|++.|.+|+||++.+....
T Consensus 2 vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~--------------------------------------------- 36 (80)
T PF00070_consen 2 VVVIGGGFIGIELAEALAELGKEVTLIERSDRLLP--------------------------------------------- 36 (80)
T ss_dssp EEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSST---------------------------------------------
T ss_pred EEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhh---------------------------------------------
Confidence 79999999999999999999999999999863210
Q ss_pred cceEEEecCceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEE
Q 008503 154 LKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIR 209 (563)
Q Consensus 154 ~~~~~~~~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~ 209 (563)
..+..+...+.+.+++.|+++++++.+.++..+++ + +. |+++
T Consensus 37 -----------~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~-~-~~-V~~~ 78 (80)
T PF00070_consen 37 -----------GFDPDAAKILEEYLRKRGVEVHTNTKVKEIEKDGD-G-VE-VTLE 78 (80)
T ss_dssp -----------TSSHHHHHHHHHHHHHTTEEEEESEEEEEEEEETT-S-EE-EEEE
T ss_pred -----------hcCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCC-E-EE-EEEe
Confidence 01122334566777889999999999999998875 4 66 7664
No 206
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.55 E-value=9.8e-07 Score=96.97 Aligned_cols=66 Identities=20% Similarity=0.152 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccCcChhh
Q 008503 168 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDS 234 (563)
Q Consensus 168 ~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~~s~~ 234 (563)
..+...|.+.+.+.|++++.++.+++|..+++ |+|.||.+.+..+++...|.|+.||+|||.++..
T Consensus 126 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~ 191 (570)
T PRK05675 126 HALLHTLYQGNLKNGTTFLNEWYAVDLVKNQD-GAVVGVIAICIETGETVYIKSKATVLATGGAGRI 191 (570)
T ss_pred HHHHHHHHHHHhccCCEEEECcEEEEEEEcCC-CeEEEEEEEEcCCCcEEEEecCeEEECCCCcccc
Confidence 56778888888889999999999999998644 7999999876567777789999999999998853
No 207
>PLN02507 glutathione reductase
Probab=98.54 E-value=1.6e-06 Score=93.84 Aligned_cols=34 Identities=35% Similarity=0.538 Sum_probs=32.2
Q ss_pred CCCccEEEECCchHHHHHHHHHHHCCCcEEEEec
Q 008503 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVER 102 (563)
Q Consensus 69 ~~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk 102 (563)
..+|||+|||||++|..+|..|++.|++|+|||+
T Consensus 23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~ 56 (499)
T PLN02507 23 HYDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 56 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 3469999999999999999999999999999997
No 208
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=98.52 E-value=1.8e-06 Score=98.29 Aligned_cols=133 Identities=20% Similarity=0.172 Sum_probs=77.6
Q ss_pred cEEEECCchHHHHHHHHHHHC--CCcEEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhhhc-
Q 008503 73 DILVIGGGATGCGVALDAATR--GLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQA- 149 (563)
Q Consensus 73 DVvIIGaGiaG~~~A~~la~~--G~~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 149 (563)
+|+|||||++|+++|+.|++. |++|+|+||+... ...+..-.+...+++.+.. + . ....+.+......
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~-~~~G~Gi~ls~~~l~~L~~----~---~-~~~~~~~~~~~~~~ 72 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPY-DTFGWGVVFSDATLGNLRA----A---D-PVSAAAIGDAFNHW 72 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCC-cccCcceEccHHHHHHHHh----c---C-HHHHHHHHHhcccC
Confidence 799999999999999999998 8999999998532 1111111111122222211 0 1 0011111111100
Q ss_pred ccC--CcceEEEecC----ceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCe
Q 008503 150 KDR--SLKGAVVYYD----GQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKV 223 (563)
Q Consensus 150 ~~~--~~~~~~~~~~----~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~ 223 (563)
... ...+...... ..++...+...|.+.+.+.|++++++++|+++.. ..+.+|.
T Consensus 73 ~~~~~~~~g~~~~~~g~~~~~i~R~~L~~~L~e~a~~~GV~i~~g~~v~~i~~--------------------~~~~~D~ 132 (765)
T PRK08255 73 DDIDVHFKGRRIRSGGHGFAGIGRKRLLNILQARCEELGVKLVFETEVPDDQA--------------------LAADADL 132 (765)
T ss_pred CceEEEECCEEEEECCeeEecCCHHHHHHHHHHHHHHcCCEEEeCCccCchhh--------------------hhcCCCE
Confidence 000 0000000011 1356678889999999999999999988765421 1246899
Q ss_pred EEEccCcChhh
Q 008503 224 VVNAAGPFCDS 234 (563)
Q Consensus 224 VI~AtG~~s~~ 234 (563)
||.|+|.+|..
T Consensus 133 VVgADG~~S~v 143 (765)
T PRK08255 133 VIASDGLNSRI 143 (765)
T ss_pred EEEcCCCCHHH
Confidence 99999999853
No 209
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.50 E-value=3.9e-06 Score=88.66 Aligned_cols=49 Identities=35% Similarity=0.528 Sum_probs=41.2
Q ss_pred CCCccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccc
Q 008503 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIH 118 (563)
Q Consensus 69 ~~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~ 118 (563)
+.+||++|||+|++|..+|..|++.|++|+|+|+.. ..|.++-|.|.+.
T Consensus 2 ~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~-~lGGtCln~GCIP 50 (454)
T COG1249 2 MKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGE-RLGGTCLNVGCIP 50 (454)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecC-CcCceEEeeCccc
Confidence 457999999999999999999999999999999995 3344566666664
No 210
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.50 E-value=1.5e-06 Score=93.67 Aligned_cols=33 Identities=39% Similarity=0.654 Sum_probs=31.8
Q ss_pred CCccEEEECCchHHHHHHHHHHHCCCcEEEEec
Q 008503 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVER 102 (563)
Q Consensus 70 ~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk 102 (563)
.+|||+|||||++|+++|..|++.|.+|+|||+
T Consensus 3 ~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~ 35 (475)
T PRK06327 3 KQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEA 35 (475)
T ss_pred cceeEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 469999999999999999999999999999998
No 211
>PRK06116 glutathione reductase; Validated
Probab=98.49 E-value=1.2e-06 Score=93.85 Aligned_cols=36 Identities=39% Similarity=0.640 Sum_probs=33.3
Q ss_pred CCccEEEECCchHHHHHHHHHHHCCCcEEEEeccCC
Q 008503 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDF 105 (563)
Q Consensus 70 ~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~ 105 (563)
.+|||+|||||++|+.+|+.|+++|++|+|||+..+
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~~~ 38 (450)
T PRK06116 3 KDYDLIVIGGGSGGIASANRAAMYGAKVALIEAKRL 38 (450)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccch
Confidence 469999999999999999999999999999999743
No 212
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=98.46 E-value=3.3e-06 Score=90.85 Aligned_cols=61 Identities=15% Similarity=0.077 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHCCCEEEcCcEEEEEEEcC--CCC-cEEEEEEEECCCCcEEEEEeCeEEEccCcCh
Q 008503 170 LNVGLALTAALAGAAVLNHAEVISLIKDE--ASN-RIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 232 (563)
Q Consensus 170 l~~~l~~~a~~~G~~i~~~~~v~~l~~~~--~~g-~v~gv~~~d~~~g~~~~i~A~~VI~AtG~~s 232 (563)
+...+.+..++.|++|+++++|++|..++ ++. ++++|.+.+ ..+ ...+.||.||+|+..+.
T Consensus 221 l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~-g~~-~~~~~aD~VVlA~p~~~ 284 (474)
T TIGR02732 221 LTKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSK-PEG-KKVIKADAYVAACDVPG 284 (474)
T ss_pred HHHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEec-CCc-ceEEECCEEEECCChHH
Confidence 45668888888999999999999998754 212 377777743 111 13589999999999864
No 213
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.45 E-value=6.5e-07 Score=85.14 Aligned_cols=141 Identities=16% Similarity=0.165 Sum_probs=78.8
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEeccC-CCCC-CccCC-CCccccchhhHHHHhhccCcccHHHHHHHHHHhhhc
Q 008503 73 DILVIGGGATGCGVALDAATRGLRVGLVERED-FSSG-TSSRS-TKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQA 149 (563)
Q Consensus 73 DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~-~~~g-~s~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 149 (563)
+|+|||+||+|+++|+.|.+.|.+|+|+||+. +++- +|.+. .+-+..|..|++- ..+.+....+.+.+.+.+
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~-----~~~~F~~~Ve~~~~~glV 77 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKP-----RDELFLRAVEALRDDGLV 77 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecC-----CchHHHHHHHHHHhCCce
Confidence 79999999999999999999999999999985 2221 22222 1222233333321 011223334555555543
Q ss_pred ccCCc-ceEEEecCc----------eechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEE
Q 008503 150 KDRSL-KGAVVYYDG----------QMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFD 218 (563)
Q Consensus 150 ~~~~~-~~~~~~~~~----------~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~ 218 (563)
. .. ...+.+.+. ++-+.. +.++.+ +.....+++++++|+.+...+ ..|.+... +|. ..
T Consensus 78 ~--~W~~~~~~~~~~~~~~~~d~~pyvg~pg-msalak-~LAtdL~V~~~~rVt~v~~~~---~~W~l~~~---~g~-~~ 146 (331)
T COG3380 78 D--VWTPAVWTFTGDGSPPRGDEDPYVGEPG-MSALAK-FLATDLTVVLETRVTEVARTD---NDWTLHTD---DGT-RH 146 (331)
T ss_pred e--eccccccccccCCCCCCCCCCccccCcc-hHHHHH-HHhccchhhhhhhhhhheecC---CeeEEEec---CCC-cc
Confidence 0 00 001111111 111111 223333 334568999999999998874 34555442 232 46
Q ss_pred EEeCeEEEccC
Q 008503 219 TYAKVVVNAAG 229 (563)
Q Consensus 219 i~A~~VI~AtG 229 (563)
..+|.||++.-
T Consensus 147 ~~~d~vvla~P 157 (331)
T COG3380 147 TQFDDVVLAIP 157 (331)
T ss_pred cccceEEEecC
Confidence 78888888765
No 214
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.43 E-value=7.2e-06 Score=88.27 Aligned_cols=35 Identities=37% Similarity=0.629 Sum_probs=32.9
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCC
Q 008503 72 LDILVIGGGATGCGVALDAATRGLRVGLVEREDFS 106 (563)
Q Consensus 72 ~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~ 106 (563)
|||+|||||++|+.+|..|+++|++|+|||+..++
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~~G 35 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGPLG 35 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCccc
Confidence 79999999999999999999999999999998643
No 215
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=98.42 E-value=1.5e-06 Score=82.19 Aligned_cols=120 Identities=23% Similarity=0.320 Sum_probs=70.9
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhhhcccC
Q 008503 73 DILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQAKDR 152 (563)
Q Consensus 73 DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 152 (563)
||+|||||++|+.+|.+|++.|++|+|+|+.+.... +. .. .... ...+.......
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~----~~----~~--~~~~-----------~~~~~~~~~~~---- 55 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPY----NS----GC--IPSP-----------LLVEIAPHRHE---- 55 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHH----HH----SH--HHHH-----------HHHHHHHHHHH----
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEeccccccc----cc----cc--cccc-----------ccccccccccc----
Confidence 799999999999999999999999999988641100 00 00 0000 00000000000
Q ss_pred CcceEEEecCceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEE--EEEEEECCCCcEEEEEeCeEEEccCc
Q 008503 153 SLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRII--GARIRNNLSGKEFDTYAKVVVNAAGP 230 (563)
Q Consensus 153 ~~~~~~~~~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~--gv~~~d~~~g~~~~i~A~~VI~AtG~ 230 (563)
..+.++. .+.+.+...+++++.+++|.++.... ..+. .+.+....++...++.+|+||+|+|.
T Consensus 56 ------------~~~~~~~-~~~~~~~~~~v~~~~~~~v~~i~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~ 120 (201)
T PF07992_consen 56 ------------FLPARLF-KLVDQLKNRGVEIRLNAKVVSIDPES--KRVVCPAVTIQVVETGDGREIKYDYLVIATGS 120 (201)
T ss_dssp ------------HHHHHHG-HHHHHHHHHTHEEEHHHTEEEEEEST--TEEEETCEEEEEEETTTEEEEEEEEEEEESTE
T ss_pred ------------ccccccc-ccccccccceEEEeeccccccccccc--cccccCcccceeeccCCceEecCCeeeecCcc
Confidence 0000000 44555567899998999999997764 3321 11111113455678999999999996
Q ss_pred Ch
Q 008503 231 FC 232 (563)
Q Consensus 231 ~s 232 (563)
..
T Consensus 121 ~~ 122 (201)
T PF07992_consen 121 RP 122 (201)
T ss_dssp EE
T ss_pred cc
Confidence 53
No 216
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.41 E-value=3.7e-06 Score=90.51 Aligned_cols=45 Identities=29% Similarity=0.485 Sum_probs=37.1
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCcc
Q 008503 71 PLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLI 117 (563)
Q Consensus 71 ~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~ 117 (563)
+|||+|||||++|+++|..|+++|++|+|||++.+++ .+.+.|.+
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~~~GG--~c~~~gci 48 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKKYWGG--VCLNVGCI 48 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCC--ceecCCcc
Confidence 5999999999999999999999999999999975533 33444444
No 217
>PTZ00058 glutathione reductase; Provisional
Probab=98.41 E-value=1.4e-06 Score=95.02 Aligned_cols=48 Identities=31% Similarity=0.457 Sum_probs=40.1
Q ss_pred CCCccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccc
Q 008503 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIH 118 (563)
Q Consensus 69 ~~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~ 118 (563)
..+|||+|||||++|..+|+.|++.|++|+|||++. .|.++-|.|.+.
T Consensus 46 ~~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~~--~GGtCln~GCiP 93 (561)
T PTZ00058 46 RMVYDLIVIGGGSGGMAAARRAARNKAKVALVEKDY--LGGTCVNVGCVP 93 (561)
T ss_pred CccccEEEECcCHHHHHHHHHHHHcCCeEEEEeccc--ccccccccCCCC
Confidence 457999999999999999999999999999999974 344556666553
No 218
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.40 E-value=3.8e-06 Score=90.37 Aligned_cols=35 Identities=49% Similarity=0.766 Sum_probs=32.4
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEeccCC
Q 008503 71 PLDILVIGGGATGCGVALDAATRGLRVGLVEREDF 105 (563)
Q Consensus 71 ~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~ 105 (563)
.|||+|||||++|+.+|+.|+++|++|+|||+..+
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie~~~~ 35 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEKEYL 35 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCC
Confidence 38999999999999999999999999999999444
No 219
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=98.39 E-value=5.9e-06 Score=89.16 Aligned_cols=48 Identities=31% Similarity=0.425 Sum_probs=38.2
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEeccCC-------CCCCccCCCCccc
Q 008503 71 PLDILVIGGGATGCGVALDAATRGLRVGLVEREDF-------SSGTSSRSTKLIH 118 (563)
Q Consensus 71 ~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~-------~~g~s~~~~~~~~ 118 (563)
+|||+|||+|++|..+|+.|++.|++|+|||+... ..|.++-|.|.++
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~n~GCiP 56 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCVNVGCIP 56 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceeccccccccCcCc
Confidence 58999999999999999999999999999998421 2344455555554
No 220
>PLN02546 glutathione reductase
Probab=98.38 E-value=4.8e-06 Score=90.92 Aligned_cols=34 Identities=24% Similarity=0.362 Sum_probs=32.1
Q ss_pred CCCccEEEECCchHHHHHHHHHHHCCCcEEEEec
Q 008503 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVER 102 (563)
Q Consensus 69 ~~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk 102 (563)
..+|||+|||+|++|..+|..|+++|++|+|||+
T Consensus 77 ~~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~ 110 (558)
T PLN02546 77 HYDFDLFTIGAGSGGVRASRFASNFGASAAVCEL 110 (558)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 3469999999999999999999999999999996
No 221
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.38 E-value=1.2e-06 Score=95.02 Aligned_cols=34 Identities=38% Similarity=0.594 Sum_probs=32.0
Q ss_pred CCccEEEECCchHHHHHHHHHHHCCCcEEEEecc
Q 008503 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVERE 103 (563)
Q Consensus 70 ~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~ 103 (563)
..|||+|||||++|+.+|..|+++|++|+|||+.
T Consensus 4 ~~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~ 37 (499)
T PTZ00052 4 FMYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYV 37 (499)
T ss_pred cccCEEEECCCHHHHHHHHHHHhCCCeEEEEecc
Confidence 3699999999999999999999999999999974
No 222
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=98.37 E-value=7.4e-07 Score=91.01 Aligned_cols=60 Identities=18% Similarity=0.231 Sum_probs=43.7
Q ss_pred HCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccCc----ChhhhhhhhcCC
Q 008503 180 LAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGP----FCDSVRKLADQN 242 (563)
Q Consensus 180 ~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~----~s~~l~~~~g~~ 242 (563)
+.|+.+..+ ++..|...++ ++ ..|+++|+.+|+..++.+|.||+++|- .+..+.+++|..
T Consensus 427 ~~gV~fIRG-rvaei~e~p~-~~-l~V~~EdTl~g~~~e~~~DLVVLa~Gmep~~g~~kia~iLgL~ 490 (622)
T COG1148 427 DYGVRFIRG-RVAEIAEFPK-KK-LIVRVEDTLTGEVKEIEADLVVLATGMEPSEGAKKIAKILGLS 490 (622)
T ss_pred hhchhhhcC-ChHHheeCCC-Ce-eEEEEEeccCccceecccceEEEeeccccCcchHHHHHhcCcc
Confidence 678888776 5556666654 44 467888877888788999999999994 244666666654
No 223
>PRK12831 putative oxidoreductase; Provisional
Probab=98.37 E-value=1e-06 Score=94.54 Aligned_cols=39 Identities=28% Similarity=0.316 Sum_probs=34.7
Q ss_pred CCCccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCC
Q 008503 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSS 107 (563)
Q Consensus 69 ~~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~ 107 (563)
....||+|||||++|+++|+.|+++|++|+|+|+.+..+
T Consensus 138 ~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~G 176 (464)
T PRK12831 138 KKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPG 176 (464)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCC
Confidence 356899999999999999999999999999999976433
No 224
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.36 E-value=1.6e-06 Score=99.93 Aligned_cols=108 Identities=17% Similarity=0.089 Sum_probs=70.5
Q ss_pred CCccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhhhc
Q 008503 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQA 149 (563)
Q Consensus 70 ~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 149 (563)
...+|+|||||++|+++|+.|+++|++|+|+|+.+..+| ++.-|+..
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG-------~l~yGIP~-------------------------- 351 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGG-------VLRYGIPE-------------------------- 351 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCc-------eEEccCCC--------------------------
Confidence 457999999999999999999999999999999864333 22111100
Q ss_pred ccCCcceEEEecCceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccC
Q 008503 150 KDRSLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAG 229 (563)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG 229 (563)
.-.|..++....+.+++.|++|++++.+-. . +.+. +.....+|.||+|+|
T Consensus 352 --------------~rlp~~vi~~~i~~l~~~Gv~f~~n~~vG~--------d---it~~-----~l~~~~yDAV~LAtG 401 (944)
T PRK12779 352 --------------FRLPNQLIDDVVEKIKLLGGRFVKNFVVGK--------T---ATLE-----DLKAAGFWKIFVGTG 401 (944)
T ss_pred --------------CcChHHHHHHHHHHHHhhcCeEEEeEEecc--------E---EeHH-----HhccccCCEEEEeCC
Confidence 011334444556667788999999875521 1 1111 112346799999999
Q ss_pred cChhhhhhhhc
Q 008503 230 PFCDSVRKLAD 240 (563)
Q Consensus 230 ~~s~~l~~~~g 240 (563)
++........|
T Consensus 402 A~~pr~l~IpG 412 (944)
T PRK12779 402 AGLPTFMNVPG 412 (944)
T ss_pred CCCCCcCCCCC
Confidence 97544333333
No 225
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=98.34 E-value=2.9e-06 Score=96.77 Aligned_cols=39 Identities=33% Similarity=0.462 Sum_probs=34.6
Q ss_pred CCccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCC
Q 008503 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSG 108 (563)
Q Consensus 70 ~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g 108 (563)
...+|+|||||++|+++|+.|++.|++|+|+|+.+..+|
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG 576 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGG 576 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCc
Confidence 456999999999999999999999999999999865433
No 226
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.33 E-value=4.2e-06 Score=89.63 Aligned_cols=111 Identities=22% Similarity=0.301 Sum_probs=69.4
Q ss_pred cEEEECCchHHHHHHHHHHHCC--CcEEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhhhcc
Q 008503 73 DILVIGGGATGCGVALDAATRG--LRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQAK 150 (563)
Q Consensus 73 DVvIIGaGiaG~~~A~~la~~G--~~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 150 (563)
+|||||||++|+++|..|++.+ .+|+|||+++...-.. .++.+..
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~--------~~~~~~~------------------------- 48 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGA--------CGLPYFV------------------------- 48 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceeec--------CCCceEe-------------------------
Confidence 6999999999999999999875 5899999986321110 0110000
Q ss_pred cCCcceEEEecCcee-chHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccC
Q 008503 151 DRSLKGAVVYYDGQM-NDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAG 229 (563)
Q Consensus 151 ~~~~~~~~~~~~~~~-~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG 229 (563)
.+.. .+..+.....+.+.+.|++++.+++|+++..++ + .|.+.+..++....+.+|++|+|||
T Consensus 49 -----------~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~~id~~~---~--~v~~~~~~~~~~~~~~yd~lviAtG 112 (444)
T PRK09564 49 -----------GGFFDDPNTMIARTPEEFIKSGIDVKTEHEVVKVDAKN---K--TITVKNLKTGSIFNDTYDKLMIATG 112 (444)
T ss_pred -----------ccccCCHHHhhcCCHHHHHHCCCeEEecCEEEEEECCC---C--EEEEEECCCCCEEEecCCEEEECCC
Confidence 0000 111122222344567899999999999997764 2 2444432234333455999999999
Q ss_pred cCh
Q 008503 230 PFC 232 (563)
Q Consensus 230 ~~s 232 (563)
...
T Consensus 113 ~~~ 115 (444)
T PRK09564 113 ARP 115 (444)
T ss_pred CCC
Confidence 843
No 227
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.31 E-value=8.7e-06 Score=87.73 Aligned_cols=48 Identities=25% Similarity=0.430 Sum_probs=38.7
Q ss_pred CCccEEEECCchHHHHHHHHHHHC-CCcEEEEecc--------CCCCCCccCCCCccc
Q 008503 70 NPLDILVIGGGATGCGVALDAATR-GLRVGLVERE--------DFSSGTSSRSTKLIH 118 (563)
Q Consensus 70 ~~~DVvIIGaGiaG~~~A~~la~~-G~~V~llEk~--------~~~~g~s~~~~~~~~ 118 (563)
.+|||+|||||++|..+|..+++. |.+|+|||++ + .-|.++-|.|.++
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~-~~GGtCln~GCiP 58 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYA-ALGGTCVNVGCVP 58 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccC-CccCeecCcCCcc
Confidence 469999999999999999999996 9999999984 2 2344556666554
No 228
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.30 E-value=8.4e-07 Score=68.11 Aligned_cols=34 Identities=35% Similarity=0.554 Sum_probs=30.0
Q ss_pred EECCchHHHHHHHHHHHCCCcEEEEeccCCCCCC
Q 008503 76 VIGGGATGCGVALDAATRGLRVGLVEREDFSSGT 109 (563)
Q Consensus 76 IIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~ 109 (563)
|||||++|+++|+.|++.|++|+|+|+++..+|.
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~ 34 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGR 34 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGG
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcc
Confidence 8999999999999999999999999999755553
No 229
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.30 E-value=1.2e-05 Score=86.65 Aligned_cols=44 Identities=36% Similarity=0.573 Sum_probs=36.7
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccc
Q 008503 73 DILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIH 118 (563)
Q Consensus 73 DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~ 118 (563)
||+|||+|++|+.+|..|+++|.+|+|+|+..+ |.++.|.|.++
T Consensus 3 ~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~~--gG~c~~~gciP 46 (466)
T PRK07845 3 RIVIIGGGPGGYEAALVAAQLGADVTVIERDGL--GGAAVLTDCVP 46 (466)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEEccCC--CCcccccCCcc
Confidence 899999999999999999999999999999864 33444555543
No 230
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=98.29 E-value=9e-06 Score=86.90 Aligned_cols=61 Identities=25% Similarity=0.288 Sum_probs=45.5
Q ss_pred CCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEe-CeEEEccCcC-hhhhhhhhcCC
Q 008503 181 AGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYA-KVVVNAAGPF-CDSVRKLADQN 242 (563)
Q Consensus 181 ~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A-~~VI~AtG~~-s~~l~~~~g~~ 242 (563)
.+..+..++.|+.+..|..+.+..+|.... ..++..++.| |-||+++|+. |.+++-+.|..
T Consensus 267 ~NL~~~~~~~vtrvl~D~~~~~a~gv~~~~-~~~~~~~v~a~kEVILSAGAi~SPQLLMLSGIG 329 (623)
T KOG1238|consen 267 PNLHISRNAAVTRVLIDPAGKRAKGVEFVR-DGGKEHTVKARKEVILSAGAINSPQLLMLSGIG 329 (623)
T ss_pred ccccccccceEEEEEEcCCCceEEEEEEEe-cCceeeeecccceEEEeccccCCHHHHHHcCCC
Confidence 467888889999999886545778887764 2256667777 6799999975 67777666655
No 231
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.29 E-value=9.3e-06 Score=91.04 Aligned_cols=39 Identities=26% Similarity=0.369 Sum_probs=34.6
Q ss_pred CCccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCC
Q 008503 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSG 108 (563)
Q Consensus 70 ~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g 108 (563)
...+|+|||||++|+++|+.|++.|++|+|+|+.+..+|
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG 364 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGG 364 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCc
Confidence 457999999999999999999999999999999864443
No 232
>PRK14727 putative mercuric reductase; Provisional
Probab=98.29 E-value=1.2e-05 Score=86.90 Aligned_cols=48 Identities=27% Similarity=0.465 Sum_probs=39.3
Q ss_pred CCCccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCcc
Q 008503 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLI 117 (563)
Q Consensus 69 ~~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~ 117 (563)
+.+|||+|||||++|+.+|+.|++.|.+|+|||+++..+|+ +.|.|.+
T Consensus 14 ~~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~-c~n~Gci 61 (479)
T PRK14727 14 KLQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGC-CVNVGCV 61 (479)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeE-ecccccc
Confidence 45799999999999999999999999999999998543443 4455544
No 233
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=98.28 E-value=1.2e-05 Score=87.62 Aligned_cols=67 Identities=22% Similarity=0.239 Sum_probs=47.3
Q ss_pred HHHHHHHH-CCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCC-cEEEEEeCeEEEccCcC-hhhhhhhhcC
Q 008503 173 GLALTAAL-AGAAVLNHAEVISLIKDEASNRIIGARIRNNLSG-KEFDTYAKVVVNAAGPF-CDSVRKLADQ 241 (563)
Q Consensus 173 ~l~~~a~~-~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g-~~~~i~A~~VI~AtG~~-s~~l~~~~g~ 241 (563)
.++..+.+ .+.++++++.|+.|..++ +++++|.+.....+ ....+.++.||+|+|.. |..+....|.
T Consensus 207 a~l~~a~~~~nl~v~t~a~v~ri~~~~--~r~~gv~~~~~~~~~~~~~~a~~~viL~AGai~Sp~LL~~Sgi 276 (542)
T COG2303 207 AYLKPALKRPNLTLLTGARVRRILLEG--DRAVGVEVEIGDGGTIETAVAAREVVLAAGAINSPKLLLLSGI 276 (542)
T ss_pred hcchhHhcCCceEEecCCEEEEEEEEC--CeeEEEEEEeCCCCceEEEecCceEEEeccccCCHHHHHhcCC
Confidence 33444444 469999999999999987 68889888752222 24556779999999976 5566555554
No 234
>PRK09897 hypothetical protein; Provisional
Probab=98.23 E-value=2.9e-05 Score=84.05 Aligned_cols=38 Identities=24% Similarity=0.412 Sum_probs=32.2
Q ss_pred ccEEEECCchHHHHHHHHHHHCC--CcEEEEeccC-CCCCC
Q 008503 72 LDILVIGGGATGCGVALDAATRG--LRVGLVERED-FSSGT 109 (563)
Q Consensus 72 ~DVvIIGaGiaG~~~A~~la~~G--~~V~llEk~~-~~~g~ 109 (563)
.+|+|||||++|+++|..|.+.+ ++|+|+|++. ++.|.
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ 42 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGM 42 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcce
Confidence 48999999999999999998864 5899999974 55554
No 235
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.22 E-value=2.1e-05 Score=80.51 Aligned_cols=73 Identities=16% Similarity=0.135 Sum_probs=55.2
Q ss_pred ecCceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccCcChhhhhhhh
Q 008503 160 YYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLA 239 (563)
Q Consensus 160 ~~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~~s~~l~~~~ 239 (563)
++-|.-.-..++..+.+..++.|++|+++|+|.+|+..+ +.+.+|... .| .+|.+++||+|.|..+.+...++
T Consensus 165 rHiGTD~l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~--~~~~~v~~~---~g--~~i~~~~vvlA~Grsg~dw~~~l 237 (486)
T COG2509 165 RHIGTDILPKVVKNIREYLESLGGEIRFNTEVEDIEIED--NEVLGVKLT---KG--EEIEADYVVLAPGRSGRDWFEML 237 (486)
T ss_pred cccCccchHHHHHHHHHHHHhcCcEEEeeeEEEEEEecC--CceEEEEcc---CC--cEEecCEEEEccCcchHHHHHHH
Confidence 333443445678888999999999999999999999876 456677542 23 58999999999998766655443
No 236
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=98.22 E-value=2.7e-06 Score=87.21 Aligned_cols=146 Identities=23% Similarity=0.244 Sum_probs=76.0
Q ss_pred CccEEEECCchHHHHHHHHHHHCC-CcEEEEeccC-CCCCCccCCCCccccchhhHHHHhhccC-----cccHHHHHHHH
Q 008503 71 PLDILVIGGGATGCGVALDAATRG-LRVGLVERED-FSSGTSSRSTKLIHGGVRYLEKAVFNLD-----YGQLKLVFHAL 143 (563)
Q Consensus 71 ~~DVvIIGaGiaG~~~A~~la~~G-~~V~llEk~~-~~~g~s~~~~~~~~~g~~~~~~~~~~~~-----~~~~~~~~~~l 143 (563)
.||+++||.|+++++.|..|.+.+ .+++.+|+.+ +.+ ..|++..|.+..-..++++- ...+. ....+
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~W-----h~gmll~~~~~q~~fl~Dlvt~~~P~s~~s-flnYL 75 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFSW-----HPGMLLPGARMQVSFLKDLVTLRDPTSPFS-FLNYL 75 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS--T-----TGGG--SS-B-SS-TTSSSSTTT-TTSTTS-HHHHH
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCCc-----CCccCCCCCccccccccccCcCcCCCCccc-HHHHH
Confidence 489999999999999999999886 9999999885 322 23444333332222111110 00111 12223
Q ss_pred HHhhhcccCCcceEEEecCcee--chHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCC-cEEEEEEEECCCCcEEEEE
Q 008503 144 EERKQAKDRSLKGAVVYYDGQM--NDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASN-RIIGARIRNNLSGKEFDTY 220 (563)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g-~v~gv~~~d~~~g~~~~i~ 220 (563)
.+++.+. .+ +..+.. ...++...+.-.+.+..-.+.++++|++|....+++ ..+.|.+++ .+|....+.
T Consensus 76 ~~~~rl~------~f-~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~-~~g~~~~~~ 147 (341)
T PF13434_consen 76 HEHGRLY------EF-YNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRD-SDGDGETYR 147 (341)
T ss_dssp HHTT-HH------HH-HHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEE-TTS-EEEEE
T ss_pred HHcCChh------hh-hhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEee-cCCCeeEEE
Confidence 3222210 00 001111 223455555555555666699999999998865311 356777766 667778999
Q ss_pred eCeEEEccCc
Q 008503 221 AKVVVNAAGP 230 (563)
Q Consensus 221 A~~VI~AtG~ 230 (563)
|+.||+++|.
T Consensus 148 ar~vVla~G~ 157 (341)
T PF13434_consen 148 ARNVVLATGG 157 (341)
T ss_dssp ESEEEE----
T ss_pred eCeEEECcCC
Confidence 9999999994
No 237
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=98.22 E-value=7.9e-06 Score=90.53 Aligned_cols=50 Identities=30% Similarity=0.433 Sum_probs=40.3
Q ss_pred CCCccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccc
Q 008503 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIH 118 (563)
Q Consensus 69 ~~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~ 118 (563)
+.+|||+|||+|++|..+|..|+++|++|+|||++...-|.++-|.|.++
T Consensus 114 ~~~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCvn~GCiP 163 (659)
T PTZ00153 114 DEEYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCVNVGCIP 163 (659)
T ss_pred cccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccceeEeCCcc
Confidence 44799999999999999999999999999999975223344566666554
No 238
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=98.21 E-value=7.1e-06 Score=83.72 Aligned_cols=150 Identities=24% Similarity=0.313 Sum_probs=85.5
Q ss_pred CCCccEEEECCchHHHHHHHHHHHCCCcEEEEecc-CCCCCCccCC-CCccccch-----hhHHHHhhccCcccHHHHHH
Q 008503 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVERE-DFSSGTSSRS-TKLIHGGV-----RYLEKAVFNLDYGQLKLVFH 141 (563)
Q Consensus 69 ~~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~-~~~~g~s~~~-~~~~~~g~-----~~~~~~~~~~~~~~~~~~~~ 141 (563)
+..|||||||||-+|+-+|.++++.|.+++|+-.+ +--+..|++. .|-+.-|. +.+...+.... +.-..-+.
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ld~Ig~msCNPsfGGigKg~LmrEVDALdGl~~rvc-D~s~vq~k 104 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNLDTIGEMSCNPSFGGIGKGHLMREVDALDGLCSRVC-DQSGVQYK 104 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHhcCCceEEeecccccccccccCcccCCcccceeeeeehhhcchHhhhh-hhhhhhHH
Confidence 56799999999999999999999999999999887 3222333332 22221111 11110000000 00000011
Q ss_pred HHHHhhhcccCCcceEEEecCceechHHHHHHHHHHHHH-CCCEEEcCcEEEEEEEcCC-CC--cEEEEEEEECCCCcEE
Q 008503 142 ALEERKQAKDRSLKGAVVYYDGQMNDSRLNVGLALTAAL-AGAAVLNHAEVISLIKDEA-SN--RIIGARIRNNLSGKEF 217 (563)
Q Consensus 142 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~-~G~~i~~~~~v~~l~~~~~-~g--~v~gv~~~d~~~g~~~ 217 (563)
.+ +-....++.-.-+++|...+-..|.+.... .+.+|+.+ .|.+|...+. .+ .|.||.+.| | .
T Consensus 105 ~L-------Nrs~GPAVwg~RAQiDR~lYkk~MQkei~st~nL~ire~-~V~dliv~~~~~~~~~~~gV~l~d---g--t 171 (679)
T KOG2311|consen 105 VL-------NRSKGPAVWGLRAQIDRKLYKKNMQKEISSTPNLEIREG-AVADLIVEDPDDGHCVVSGVVLVD---G--T 171 (679)
T ss_pred Hh-------hccCCCcccChHHhhhHHHHHHHHHHHhccCCcchhhhh-hhhheeeccCCCCceEEEEEEEec---C--c
Confidence 11 111122333445667777776666655432 35677665 5666655332 12 377887753 4 3
Q ss_pred EEEeCeEEEccCcCh
Q 008503 218 DTYAKVVVNAAGPFC 232 (563)
Q Consensus 218 ~i~A~~VI~AtG~~s 232 (563)
.+.|+.||+.||.|-
T Consensus 172 ~v~a~~VilTTGTFL 186 (679)
T KOG2311|consen 172 VVYAESVILTTGTFL 186 (679)
T ss_pred EeccceEEEeeccce
Confidence 799999999999764
No 239
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=98.21 E-value=4.5e-06 Score=95.65 Aligned_cols=39 Identities=26% Similarity=0.411 Sum_probs=34.7
Q ss_pred CCccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCC
Q 008503 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSG 108 (563)
Q Consensus 70 ~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g 108 (563)
..+||+|||||++|+++|+.|+++|++|+|+|+.+..+|
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG 574 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGG 574 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCc
Confidence 357999999999999999999999999999999865443
No 240
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=98.18 E-value=4.8e-06 Score=89.43 Aligned_cols=38 Identities=29% Similarity=0.411 Sum_probs=34.2
Q ss_pred CCCccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCC
Q 008503 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFS 106 (563)
Q Consensus 69 ~~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~ 106 (563)
....+|+|||||++|+++|+.|+++|++|+|+|+.+..
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~ 175 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKA 175 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCC
Confidence 34579999999999999999999999999999998643
No 241
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=98.18 E-value=1.2e-05 Score=86.66 Aligned_cols=52 Identities=10% Similarity=-0.029 Sum_probs=47.0
Q ss_pred CCCccHHHHHHHHHhcCCCChhHHHHhhcccccCChHHHhhhHHHHHHHHHHHcCCCH
Q 008503 475 GYPFLEAEVAYCARNEYCESAVDFVARRCRLAFLDTDAAGRALPRIIEIMATEHKWDK 532 (563)
Q Consensus 475 c~~v~~~ei~~ai~~e~~~~~~D~l~rRtr~g~g~~~~g~~~~~~v~~~la~~l~~~~ 532 (563)
|+.||+++|..||.+ +++++|.||.+|.+|-+ |.+ |.|-|.++|..+++-..
T Consensus 418 Cn~VtKG~I~~aI~~--g~~tv~~vk~~TkA~ts--CGs--C~plveqlL~~~~~~~~ 469 (793)
T COG1251 418 CNGVTKGAIIGAITK--GCTTVDEVKACTKAGTS--CGS--CKPLVEQLLAATLGDQF 469 (793)
T ss_pred CCCccHHHHHHHHHc--cCCCHHHHHHhhcCCCC--CcC--cHHHHHHHHHhhccccc
Confidence 999999999999994 88889999999999996 755 99999999999998653
No 242
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=98.17 E-value=7.8e-06 Score=83.98 Aligned_cols=42 Identities=26% Similarity=0.529 Sum_probs=37.5
Q ss_pred CCCccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCc
Q 008503 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTS 110 (563)
Q Consensus 69 ~~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s 110 (563)
...+||+|||+|.+||++|++|.+.|++|+|+|.++-.+|-+
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR~ 46 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRS 46 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCcee
Confidence 457899999999999999999999999999999998655543
No 243
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=98.17 E-value=6.3e-06 Score=85.37 Aligned_cols=38 Identities=21% Similarity=0.254 Sum_probs=33.9
Q ss_pred CCccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCC
Q 008503 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSS 107 (563)
Q Consensus 70 ~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~ 107 (563)
...+|+|||||++|+.+|..|++.|++|+++|+.+..+
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~g 54 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPG 54 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCC
Confidence 34689999999999999999999999999999986443
No 244
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.17 E-value=5.1e-06 Score=89.35 Aligned_cols=36 Identities=36% Similarity=0.588 Sum_probs=33.0
Q ss_pred CCccEEEECCchHHHHHHHHHHHCCCcEEEEeccCC
Q 008503 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDF 105 (563)
Q Consensus 70 ~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~ 105 (563)
.+|||+|||||++|+++|..|++.|++|+|||++.+
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~ 37 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEKGPL 37 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeCCcc
Confidence 459999999999999999999999999999999533
No 245
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=98.16 E-value=4.7e-06 Score=89.18 Aligned_cols=38 Identities=29% Similarity=0.349 Sum_probs=34.3
Q ss_pred CCCccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCC
Q 008503 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFS 106 (563)
Q Consensus 69 ~~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~ 106 (563)
...+||+|||||++|+++|+.|+++|++|+|+|+.+..
T Consensus 131 ~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~ 168 (449)
T TIGR01316 131 STHKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKP 168 (449)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 34689999999999999999999999999999998643
No 246
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=98.15 E-value=4.4e-06 Score=97.21 Aligned_cols=110 Identities=14% Similarity=0.106 Sum_probs=71.1
Q ss_pred CCccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhhhc
Q 008503 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQA 149 (563)
Q Consensus 70 ~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 149 (563)
...+|+|||||++|+++|+.|+++|++|+|+|+.+..+|. +..|+..
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~-------l~~gip~-------------------------- 475 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGV-------LQYGIPS-------------------------- 475 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcce-------eeccCCc--------------------------
Confidence 3579999999999999999999999999999998644331 1111100
Q ss_pred ccCCcceEEEecCceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccC
Q 008503 150 KDRSLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAG 229 (563)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG 229 (563)
...|..+.....+.+.+.|+++++++.+. . . +.+.+ .. ....+|.||+|||
T Consensus 476 --------------~rl~~e~~~~~~~~l~~~Gv~~~~~~~vg-----~---~---~~~~~-l~---~~~~yDaViIATG 526 (1006)
T PRK12775 476 --------------FRLPRDIIDREVQRLVDIGVKIETNKVIG-----K---T---FTVPQ-LM---NDKGFDAVFLGVG 526 (1006)
T ss_pred --------------cCCCHHHHHHHHHHHHHCCCEEEeCCccC-----C---c---cCHHH-Hh---hccCCCEEEEecC
Confidence 01234455566777788999999986541 0 1 11110 00 0234799999999
Q ss_pred cChhhhhhhhcC
Q 008503 230 PFCDSVRKLADQ 241 (563)
Q Consensus 230 ~~s~~l~~~~g~ 241 (563)
.+........|.
T Consensus 527 a~~pr~l~IpG~ 538 (1006)
T PRK12775 527 AGAPTFLGIPGE 538 (1006)
T ss_pred CCCCCCCCCCCc
Confidence 975444444443
No 247
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=1.5e-05 Score=78.02 Aligned_cols=63 Identities=14% Similarity=0.075 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccCcCh
Q 008503 168 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 232 (563)
Q Consensus 168 ~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~~s 232 (563)
..+...+.+..++.|+.|...+....+++.++ ++. -|..+...+++..+-..+.|+.|.|--+
T Consensus 238 qdmae~v~~~m~~~Gikf~~~~vp~~Veq~~~-g~l-~v~~k~t~t~~~~~~~ydTVl~AiGR~~ 300 (503)
T KOG4716|consen 238 QDMAELVAEHMEERGIKFLRKTVPERVEQIDD-GKL-RVFYKNTNTGEEGEEEYDTVLWAIGRKA 300 (503)
T ss_pred HHHHHHHHHHHHHhCCceeecccceeeeeccC-CcE-EEEeecccccccccchhhhhhhhhcccc
Confidence 45667777888899999999999999988765 553 4555554555555556788999999643
No 248
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=98.14 E-value=5.9e-06 Score=94.16 Aligned_cols=38 Identities=34% Similarity=0.389 Sum_probs=34.1
Q ss_pred CCCccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCC
Q 008503 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFS 106 (563)
Q Consensus 69 ~~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~ 106 (563)
....||+|||||++|+++|+.|+++|++|+|+|+.+..
T Consensus 429 ~~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~ 466 (752)
T PRK12778 429 KNGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEI 466 (752)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 34679999999999999999999999999999997543
No 249
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.14 E-value=1.7e-05 Score=84.69 Aligned_cols=111 Identities=15% Similarity=0.151 Sum_probs=68.6
Q ss_pred cEEEECCchHHHHHHHHHHHC--CCcEEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhhhcc
Q 008503 73 DILVIGGGATGCGVALDAATR--GLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQAK 150 (563)
Q Consensus 73 DVvIIGaGiaG~~~A~~la~~--G~~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 150 (563)
+|||||||++|+.+|..|.+. +.+|+|||+++...-. ..++.+...
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~~~--------~~~lp~~~~------------------------ 50 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFA--------NCALPYYIG------------------------ 50 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcccc--------cCCcchhhc------------------------
Confidence 799999999999999999887 6899999998531100 011111100
Q ss_pred cCCcceEEEecCceechHH-HHHHHHHH-HHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEcc
Q 008503 151 DRSLKGAVVYYDGQMNDSR-LNVGLALT-AALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAA 228 (563)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~-l~~~l~~~-a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~At 228 (563)
+.+.+.. +.....+. ..+.|++++.+++|++|..++ + .|.+.+..+++..++.+|++|+||
T Consensus 51 ------------~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~V~~Id~~~---~--~v~~~~~~~~~~~~~~yd~lviAt 113 (438)
T PRK13512 51 ------------EVVEDRKYALAYTPEKFYDRKQITVKTYHEVIAINDER---Q--TVTVLNRKTNEQFEESYDKLILSP 113 (438)
T ss_pred ------------CccCCHHHcccCCHHHHHHhCCCEEEeCCEEEEEECCC---C--EEEEEECCCCcEEeeecCEEEECC
Confidence 0000000 00000112 245799999999999997764 2 244544223344568899999999
Q ss_pred CcCh
Q 008503 229 GPFC 232 (563)
Q Consensus 229 G~~s 232 (563)
|...
T Consensus 114 Gs~~ 117 (438)
T PRK13512 114 GASA 117 (438)
T ss_pred CCCC
Confidence 9854
No 250
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=98.11 E-value=7.7e-06 Score=88.11 Aligned_cols=38 Identities=29% Similarity=0.401 Sum_probs=34.2
Q ss_pred CCccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCC
Q 008503 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSS 107 (563)
Q Consensus 70 ~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~ 107 (563)
..++|+|||||++|+++|..|++.|++|+|+|+.+..+
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~G 179 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIG 179 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCC
Confidence 45799999999999999999999999999999986443
No 251
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=98.10 E-value=2.9e-05 Score=85.44 Aligned_cols=65 Identities=18% Similarity=0.121 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccCcChhh
Q 008503 168 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDS 234 (563)
Q Consensus 168 ~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~~s~~ 234 (563)
..+...|.+.+.+.|++|++++.+++|..++ |+|.||.+.+..+++...|.|+.||+|||.++..
T Consensus 119 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~--g~v~Ga~~~~~~~g~~~~i~AkaVILATGG~~~~ 183 (565)
T TIGR01816 119 HAILHTLYQQNLKADTSFFNEYFALDLLMED--GECRGVIAYCLETGEIHRFRAKAVVLATGGYGRI 183 (565)
T ss_pred HHHHHHHHHHHHhCCCEEEeccEEEEEEeeC--CEEEEEEEEEcCCCcEEEEEeCeEEECCCCcccc
Confidence 4677888888888999999999999999764 7999998876567777789999999999998754
No 252
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.10 E-value=4.6e-05 Score=85.19 Aligned_cols=39 Identities=31% Similarity=0.452 Sum_probs=34.8
Q ss_pred CCccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCC
Q 008503 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSG 108 (563)
Q Consensus 70 ~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g 108 (563)
...+|+|||+|++|+++|+.|++.|++|+|+|+.+..+|
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG 347 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGG 347 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCC
Confidence 457899999999999999999999999999999874443
No 253
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.10 E-value=5.2e-05 Score=81.48 Aligned_cols=44 Identities=32% Similarity=0.568 Sum_probs=36.6
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccc
Q 008503 73 DILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIH 118 (563)
Q Consensus 73 DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~ 118 (563)
+|+|||||++|+++|..|++.|++|+|||++.+ |.++-|.|.++
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~~--GG~c~n~gciP 45 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEADL--GGTCLNEGCMP 45 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCcc--cccCCCCcccc
Confidence 799999999999999999999999999999864 33445555554
No 254
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=9.9e-06 Score=79.56 Aligned_cols=119 Identities=24% Similarity=0.378 Sum_probs=81.8
Q ss_pred CCCccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhhh
Q 008503 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQ 148 (563)
Q Consensus 69 ~~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 148 (563)
...|||+|||||++|.++|.++|+.|++.-|+-.. |++. --... .+
T Consensus 209 k~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~aer-fGGQ-vldT~--------------------~I------------ 254 (520)
T COG3634 209 KDAYDVLVVGGGPAGAAAAIYAARKGIRTGLVAER-FGGQ-VLDTM--------------------GI------------ 254 (520)
T ss_pred cCCceEEEEcCCcchhHHHHHHHhhcchhhhhhhh-hCCe-ecccc--------------------ch------------
Confidence 45699999999999999999999999998887543 3221 10000 00
Q ss_pred cccCCcceEEEecCceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEcc
Q 008503 149 AKDRSLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAA 228 (563)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~At 228 (563)
+++. ... .....++..+|.+..++..+++.+..++++++.....+...-|++ .+| ..++++.||++|
T Consensus 255 ---ENfI-sv~----~teGpkl~~ale~Hv~~Y~vDimn~qra~~l~~a~~~~~l~ev~l---~nG--avLkaktvIlst 321 (520)
T COG3634 255 ---ENFI-SVP----ETEGPKLAAALEAHVKQYDVDVMNLQRASKLEPAAVEGGLIEVEL---ANG--AVLKARTVILAT 321 (520)
T ss_pred ---hhee-ccc----cccchHHHHHHHHHHhhcCchhhhhhhhhcceecCCCCccEEEEe---cCC--ceeccceEEEec
Confidence 0000 001 123457788888888899999999999999987433244555665 345 478999999999
Q ss_pred CcChhh
Q 008503 229 GPFCDS 234 (563)
Q Consensus 229 G~~s~~ 234 (563)
|+.-.+
T Consensus 322 GArWRn 327 (520)
T COG3634 322 GARWRN 327 (520)
T ss_pred Ccchhc
Confidence 985443
No 255
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=98.07 E-value=1.1e-05 Score=86.68 Aligned_cols=109 Identities=18% Similarity=0.129 Sum_probs=70.6
Q ss_pred CCccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhhhc
Q 008503 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQA 149 (563)
Q Consensus 70 ~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 149 (563)
...+|+|||||++|+++|+.|+++|++|+|+|+.+..+|. +..|+..
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~-------l~~gip~-------------------------- 186 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGL-------LTFGIPS-------------------------- 186 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCce-------eeecCcc--------------------------
Confidence 4579999999999999999999999999999998643331 1111100
Q ss_pred ccCCcceEEEecCceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccC
Q 008503 150 KDRSLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAG 229 (563)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG 229 (563)
. .-+..+.....+.+.+.|++++.++.|..- + .+ .+ ....+|.||+|+|
T Consensus 187 -------------~-~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~--------~---~~----~~--~~~~~D~vilAtG 235 (467)
T TIGR01318 187 -------------F-KLDKAVLSRRREIFTAMGIEFHLNCEVGRD--------I---SL----DD--LLEDYDAVFLGVG 235 (467)
T ss_pred -------------c-cCCHHHHHHHHHHHHHCCCEEECCCEeCCc--------c---CH----HH--HHhcCCEEEEEeC
Confidence 0 012233344556677899999999877321 0 00 01 1235899999999
Q ss_pred cChhhhhhhhcCC
Q 008503 230 PFCDSVRKLADQN 242 (563)
Q Consensus 230 ~~s~~l~~~~g~~ 242 (563)
.+........|.+
T Consensus 236 a~~~~~~~i~g~~ 248 (467)
T TIGR01318 236 TYRSMRGGLPGED 248 (467)
T ss_pred CCCCCcCCCCCcC
Confidence 9765433444444
No 256
>PLN02852 ferredoxin-NADP+ reductase
Probab=98.04 E-value=2.1e-05 Score=84.04 Aligned_cols=39 Identities=33% Similarity=0.513 Sum_probs=34.0
Q ss_pred CCccEEEECCchHHHHHHHHHHH--CCCcEEEEeccCCCCC
Q 008503 70 NPLDILVIGGGATGCGVALDAAT--RGLRVGLVEREDFSSG 108 (563)
Q Consensus 70 ~~~DVvIIGaGiaG~~~A~~la~--~G~~V~llEk~~~~~g 108 (563)
...+|+|||||++|+.+|+.|++ .|++|+|+|+.+..+|
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgG 65 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFG 65 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcc
Confidence 34689999999999999999997 7999999999975444
No 257
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.03 E-value=7.4e-05 Score=80.65 Aligned_cols=102 Identities=25% Similarity=0.268 Sum_probs=73.3
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhhhcc
Q 008503 71 PLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQAK 150 (563)
Q Consensus 71 ~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 150 (563)
.-.|+|||||.+|+-+|..|++.|.+|+|+|+.+.... .
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il~-----------~------------------------------ 218 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILP-----------T------------------------------ 218 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccCC-----------c------------------------------
Confidence 35899999999999999999999999999999852100 0
Q ss_pred cCCcceEEEecCceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccCc
Q 008503 151 DRSLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGP 230 (563)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~ 230 (563)
.+..+...+.+.+++.|+++++++.|+++..+.+ +++..+.. .+|+..++.+|.||+|+|.
T Consensus 219 ---------------~~~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~-~~~~~~~~---~~g~~~~i~~D~vi~a~G~ 279 (472)
T PRK05976 219 ---------------EDAELSKEVARLLKKLGVRVVTGAKVLGLTLKKD-GGVLIVAE---HNGEEKTLEADKVLVSVGR 279 (472)
T ss_pred ---------------CCHHHHHHHHHHHHhcCCEEEeCcEEEEEEEecC-CCEEEEEE---eCCceEEEEeCEEEEeeCC
Confidence 0122333455666788999999999999975212 34433322 2454457999999999997
Q ss_pred Ch
Q 008503 231 FC 232 (563)
Q Consensus 231 ~s 232 (563)
-.
T Consensus 280 ~p 281 (472)
T PRK05976 280 RP 281 (472)
T ss_pred cc
Confidence 44
No 258
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=98.02 E-value=1.1e-05 Score=86.53 Aligned_cols=45 Identities=22% Similarity=0.349 Sum_probs=34.8
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCcccc
Q 008503 71 PLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHG 119 (563)
Q Consensus 71 ~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~ 119 (563)
+|||+|||+|++|..+|.. ..|.+|+|||++.+ |.++-|.|.++.
T Consensus 2 ~yD~vvIG~G~~g~~aa~~--~~g~~V~lie~~~~--GGtC~n~GCiPs 46 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPR--FADKRIAIVEKGTF--GGTCLNVGCIPT 46 (452)
T ss_pred CcCEEEECCCHHHHHHHHH--HCCCeEEEEeCCCC--CCeeeccCccch
Confidence 5999999999999888654 46999999999754 444566665543
No 259
>PRK07846 mycothione reductase; Reviewed
Probab=98.01 E-value=4.3e-05 Score=81.81 Aligned_cols=45 Identities=22% Similarity=0.372 Sum_probs=34.9
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCcccc
Q 008503 71 PLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHG 119 (563)
Q Consensus 71 ~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~ 119 (563)
+|||+|||||++|..+|.. +.|++|+|||+..+ |.++-|.|.++.
T Consensus 1 ~yD~vVIG~G~~g~~aa~~--~~G~~V~lie~~~~--GGtC~n~GCiPs 45 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDER--FADKRIAIVEKGTF--GGTCLNVGCIPT 45 (451)
T ss_pred CCCEEEECCCHHHHHHHHH--HCCCeEEEEeCCCC--CCcccCcCcchh
Confidence 4899999999999988876 35999999999754 334556665543
No 260
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=97.99 E-value=9.3e-05 Score=79.65 Aligned_cols=100 Identities=22% Similarity=0.278 Sum_probs=72.8
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhhhcc
Q 008503 71 PLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQAK 150 (563)
Q Consensus 71 ~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 150 (563)
.-+|+|||||.+|+.+|..|++.|.+|+|+|+.+.... +
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~--------------~--------------------------- 208 (461)
T TIGR01350 170 PESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILP--------------G--------------------------- 208 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCC--------------C---------------------------
Confidence 35899999999999999999999999999999752100 0
Q ss_pred cCCcceEEEecCceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccCc
Q 008503 151 DRSLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGP 230 (563)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~ 230 (563)
.+..+...+.+.+++.|++++++++|.++..++ +.+. +.. .++...++.+|.||+|+|.
T Consensus 209 ---------------~~~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~--~~v~-v~~---~~g~~~~i~~D~vi~a~G~ 267 (461)
T TIGR01350 209 ---------------EDAEVSKVVAKALKKKGVKILTNTKVTAVEKND--DQVV-YEN---KGGETETLTGEKVLVAVGR 267 (461)
T ss_pred ---------------CCHHHHHHHHHHHHHcCCEEEeCCEEEEEEEeC--CEEE-EEE---eCCcEEEEEeCEEEEecCC
Confidence 001222345566778899999999999998764 3442 322 2343357999999999997
Q ss_pred Ch
Q 008503 231 FC 232 (563)
Q Consensus 231 ~s 232 (563)
..
T Consensus 268 ~p 269 (461)
T TIGR01350 268 KP 269 (461)
T ss_pred cc
Confidence 54
No 261
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=97.99 E-value=2.4e-05 Score=84.50 Aligned_cols=36 Identities=31% Similarity=0.418 Sum_probs=33.1
Q ss_pred CCccEEEECCchHHHHHHHHHHHCCCcEEEEeccCC
Q 008503 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDF 105 (563)
Q Consensus 70 ~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~ 105 (563)
...+|+|||||++|+.+|..|+++|++|+|+|+.+.
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~ 177 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDR 177 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 347999999999999999999999999999999863
No 262
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=97.97 E-value=0.00012 Score=76.74 Aligned_cols=108 Identities=24% Similarity=0.298 Sum_probs=76.0
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhhhcc
Q 008503 71 PLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQAK 150 (563)
Q Consensus 71 ~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 150 (563)
.-+|+|||||.+|+-+|..|+++|.+|+++++.+.... +
T Consensus 141 ~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~-------------~---------------------------- 179 (377)
T PRK04965 141 AQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLA-------------S---------------------------- 179 (377)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccc-------------h----------------------------
Confidence 35799999999999999999999999999998742100 0
Q ss_pred cCCcceEEEecCceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccCc
Q 008503 151 DRSLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGP 230 (563)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~ 230 (563)
..+..+...+.+.+++.|++++++++|.++..++ +. +.+.+ .++ .++.+|.||+|+|.
T Consensus 180 --------------~~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~--~~-~~v~~---~~g--~~i~~D~vI~a~G~ 237 (377)
T PRK04965 180 --------------LMPPEVSSRLQHRLTEMGVHLLLKSQLQGLEKTD--SG-IRATL---DSG--RSIEVDAVIAAAGL 237 (377)
T ss_pred --------------hCCHHHHHHHHHHHHhCCCEEEECCeEEEEEccC--CE-EEEEE---cCC--cEEECCEEEECcCC
Confidence 0011223345666778999999999999998654 22 23443 234 37999999999998
Q ss_pred Chh-hhhhhhcC
Q 008503 231 FCD-SVRKLADQ 241 (563)
Q Consensus 231 ~s~-~l~~~~g~ 241 (563)
..+ .+.+..|.
T Consensus 238 ~p~~~l~~~~gl 249 (377)
T PRK04965 238 RPNTALARRAGL 249 (377)
T ss_pred CcchHHHHHCCC
Confidence 654 24444443
No 263
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=97.97 E-value=0.0001 Score=81.30 Aligned_cols=39 Identities=28% Similarity=0.374 Sum_probs=34.3
Q ss_pred CCccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCC
Q 008503 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSG 108 (563)
Q Consensus 70 ~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g 108 (563)
...+|+|||+|++|+++|+.|++.|++|+|+|+.+..+|
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG 174 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGG 174 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCC
Confidence 346899999999999999999999999999999864443
No 264
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.96 E-value=0.00013 Score=78.57 Aligned_cols=101 Identities=23% Similarity=0.254 Sum_probs=73.2
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhhhccc
Q 008503 72 LDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQAKD 151 (563)
Q Consensus 72 ~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 151 (563)
-.|+|||||.+|+-+|..+++.|.+|+|+|+.+.... .
T Consensus 173 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~-----------~------------------------------- 210 (466)
T PRK07818 173 KSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALP-----------N------------------------------- 210 (466)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCC-----------c-------------------------------
Confidence 4799999999999999999999999999998641100 0
Q ss_pred CCcceEEEecCceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccCcC
Q 008503 152 RSLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPF 231 (563)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~~ 231 (563)
. +..+...+.+.+++.|++++++++|+++..++ +.+ .+.+.. .+|+..++.+|.||+|+|.-
T Consensus 211 -------------~-d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~--~~~-~v~~~~-~~g~~~~i~~D~vi~a~G~~ 272 (466)
T PRK07818 211 -------------E-DAEVSKEIAKQYKKLGVKILTGTKVESIDDNG--SKV-TVTVSK-KDGKAQELEADKVLQAIGFA 272 (466)
T ss_pred -------------c-CHHHHHHHHHHHHHCCCEEEECCEEEEEEEeC--CeE-EEEEEe-cCCCeEEEEeCEEEECcCcc
Confidence 0 11233355666778999999999999997653 233 344432 24444579999999999964
Q ss_pred h
Q 008503 232 C 232 (563)
Q Consensus 232 s 232 (563)
.
T Consensus 273 p 273 (466)
T PRK07818 273 P 273 (466)
T ss_pred c
Confidence 3
No 265
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=97.96 E-value=0.00011 Score=66.56 Aligned_cols=35 Identities=26% Similarity=0.507 Sum_probs=30.1
Q ss_pred EEECCchHHHHHHHHHHHC-----CCcEEEEeccCCCCCC
Q 008503 75 LVIGGGATGCGVALDAATR-----GLRVGLVEREDFSSGT 109 (563)
Q Consensus 75 vIIGaGiaG~~~A~~la~~-----G~~V~llEk~~~~~g~ 109 (563)
+|||+|++|++++.+|.+. ..+|+|+|+..++.|.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~G~G~ 40 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPFGAGG 40 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCccccc
Confidence 5999999999999999988 5789999998765443
No 266
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.96 E-value=2.6e-05 Score=87.26 Aligned_cols=39 Identities=21% Similarity=0.394 Sum_probs=34.5
Q ss_pred CCccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCC
Q 008503 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSG 108 (563)
Q Consensus 70 ~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g 108 (563)
...+|+|||||++|+++|+.|++.|++|+|+|+.+..+|
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG 230 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGG 230 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence 457999999999999999999999999999999864433
No 267
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.95 E-value=0.00011 Score=79.00 Aligned_cols=100 Identities=23% Similarity=0.244 Sum_probs=72.5
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhhhccc
Q 008503 72 LDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQAKD 151 (563)
Q Consensus 72 ~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 151 (563)
-.|+|||||.+|+-+|..+++.|.+|+++++.+.... .
T Consensus 173 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~-----------~------------------------------- 210 (462)
T PRK06416 173 KSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILP-----------G------------------------------- 210 (462)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCC-----------c-------------------------------
Confidence 4799999999999999999999999999999752100 0
Q ss_pred CCcceEEEecCceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccCcC
Q 008503 152 RSLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPF 231 (563)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~~ 231 (563)
.+..+...+.+.+++.|++++++++|+++..++ +.+ .+...+ .+...++.+|.||+|+|..
T Consensus 211 --------------~~~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~--~~v-~v~~~~--gg~~~~i~~D~vi~a~G~~ 271 (462)
T PRK06416 211 --------------EDKEISKLAERALKKRGIKIKTGAKAKKVEQTD--DGV-TVTLED--GGKEETLEADYVLVAVGRR 271 (462)
T ss_pred --------------CCHHHHHHHHHHHHHcCCEEEeCCEEEEEEEeC--CEE-EEEEEe--CCeeEEEEeCEEEEeeCCc
Confidence 011223345566778899999999999998764 333 233322 2333579999999999975
Q ss_pred h
Q 008503 232 C 232 (563)
Q Consensus 232 s 232 (563)
.
T Consensus 272 p 272 (462)
T PRK06416 272 P 272 (462)
T ss_pred c
Confidence 4
No 268
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=97.94 E-value=5.2e-05 Score=74.84 Aligned_cols=39 Identities=31% Similarity=0.341 Sum_probs=33.6
Q ss_pred CCccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCC
Q 008503 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGT 109 (563)
Q Consensus 70 ~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~ 109 (563)
...+|+|||+|++|+++|+.|+++ .+|+|+|.++..+|.
T Consensus 7 ~r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGh 45 (447)
T COG2907 7 PRRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGH 45 (447)
T ss_pred CCcceEEEcccchhhhhHHhhhcc-cceEEEeccccccCc
Confidence 346899999999999999999986 799999999755553
No 269
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.94 E-value=0.00016 Score=77.93 Aligned_cols=103 Identities=20% Similarity=0.180 Sum_probs=73.4
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhhhcc
Q 008503 71 PLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQAK 150 (563)
Q Consensus 71 ~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 150 (563)
.-.|+|||||.+|+-.|..+++.|.+|+|+|+.+.... +
T Consensus 174 ~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~-----------~------------------------------ 212 (466)
T PRK06115 174 PKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICP-----------G------------------------------ 212 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCC-----------C------------------------------
Confidence 35799999999999999999999999999998741100 0
Q ss_pred cCCcceEEEecCceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccCc
Q 008503 151 DRSLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGP 230 (563)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~ 230 (563)
+ +..+...+.+.+.+.|+++++++.|+++..+++ .+ .+.+.+..++....+.+|.||+|+|.
T Consensus 213 --------------~-d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~--~v-~v~~~~~~~g~~~~i~~D~vi~a~G~ 274 (466)
T PRK06115 213 --------------T-DTETAKTLQKALTKQGMKFKLGSKVTGATAGAD--GV-SLTLEPAAGGAAETLQADYVLVAIGR 274 (466)
T ss_pred --------------C-CHHHHHHHHHHHHhcCCEEEECcEEEEEEEcCC--eE-EEEEEEcCCCceeEEEeCEEEEccCC
Confidence 0 112223455666788999999999999986542 33 33343222344457999999999996
Q ss_pred Ch
Q 008503 231 FC 232 (563)
Q Consensus 231 ~s 232 (563)
-.
T Consensus 275 ~p 276 (466)
T PRK06115 275 RP 276 (466)
T ss_pred cc
Confidence 43
No 270
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.93 E-value=1.1e-05 Score=86.34 Aligned_cols=40 Identities=28% Similarity=0.412 Sum_probs=36.2
Q ss_pred CCCccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCC
Q 008503 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSG 108 (563)
Q Consensus 69 ~~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g 108 (563)
....+|+|||||++|++||+.|.+.|++|+|+|..+..+|
T Consensus 13 ~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGG 52 (501)
T KOG0029|consen 13 GKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGG 52 (501)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCc
Confidence 4568999999999999999999999999999999985554
No 271
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=97.91 E-value=2.1e-05 Score=81.82 Aligned_cols=104 Identities=22% Similarity=0.248 Sum_probs=67.2
Q ss_pred cEEEECCchHHHHHHHHHHHC---CCcEEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhhhc
Q 008503 73 DILVIGGGATGCGVALDAATR---GLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQA 149 (563)
Q Consensus 73 DVvIIGaGiaG~~~A~~la~~---G~~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 149 (563)
.|||||||++|+.+|..|.++ +.+|+|||+++...-. +.+.+
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~---------~~~~~-------------------------- 45 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYS---------GMLPG-------------------------- 45 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCccc---------chhhH--------------------------
Confidence 489999999999999999643 7899999988531110 00000
Q ss_pred ccCCcceEEEecCceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccC
Q 008503 150 KDRSLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAG 229 (563)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG 229 (563)
+..+.+.+.++...+.+.+.+.|++++.+ +|+++..++ + .|.+ .+++ ++++|++|+|||
T Consensus 46 ----------~~~g~~~~~~~~~~~~~~~~~~gv~~~~~-~v~~id~~~---~--~V~~---~~g~--~~~yD~LviAtG 104 (364)
T TIGR03169 46 ----------MIAGHYSLDEIRIDLRRLARQAGARFVIA-EATGIDPDR---R--KVLL---ANRP--PLSYDVLSLDVG 104 (364)
T ss_pred ----------HHheeCCHHHhcccHHHHHHhcCCEEEEE-EEEEEeccc---C--EEEE---CCCC--cccccEEEEccC
Confidence 00122233333334445566789999875 899987764 2 2333 2343 689999999999
Q ss_pred cCh
Q 008503 230 PFC 232 (563)
Q Consensus 230 ~~s 232 (563)
...
T Consensus 105 ~~~ 107 (364)
T TIGR03169 105 STT 107 (364)
T ss_pred CCC
Confidence 754
No 272
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=97.90 E-value=6.8e-05 Score=79.01 Aligned_cols=107 Identities=17% Similarity=0.123 Sum_probs=66.1
Q ss_pred ccEEEECCchHHHHHHHHHHHCCC--cEEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhhhc
Q 008503 72 LDILVIGGGATGCGVALDAATRGL--RVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQA 149 (563)
Q Consensus 72 ~DVvIIGaGiaG~~~A~~la~~G~--~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 149 (563)
.+|||||||++|+.+|..|.++|. +|+|+++.+...- .+. . +. ..++..
T Consensus 4 ~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y--~r~-~-l~--~~~~~~----------------------- 54 (396)
T PRK09754 4 KTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPY--ERP-P-LS--KSMLLE----------------------- 54 (396)
T ss_pred CcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCC--CCC-C-CC--HHHHCC-----------------------
Confidence 479999999999999999999986 7999998752110 000 0 00 000000
Q ss_pred ccCCcceEEEecCceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccC
Q 008503 150 KDRSLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAG 229 (563)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG 229 (563)
.. .....+.+ .+...++|++++.++.|+.+..+. .. |.+ .+| ..+.+|.+|+|||
T Consensus 55 --~~------~~~~~~~~-------~~~~~~~~i~~~~g~~V~~id~~~--~~---v~~---~~g--~~~~yd~LViATG 109 (396)
T PRK09754 55 --DS------PQLQQVLP-------ANWWQENNVHLHSGVTIKTLGRDT--RE---LVL---TNG--ESWHWDQLFIATG 109 (396)
T ss_pred --CC------ccccccCC-------HHHHHHCCCEEEcCCEEEEEECCC--CE---EEE---CCC--CEEEcCEEEEccC
Confidence 00 00000111 122346899999999999997653 22 333 234 3699999999999
Q ss_pred cCh
Q 008503 230 PFC 232 (563)
Q Consensus 230 ~~s 232 (563)
...
T Consensus 110 s~~ 112 (396)
T PRK09754 110 AAA 112 (396)
T ss_pred CCC
Confidence 865
No 273
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.90 E-value=0.00018 Score=77.28 Aligned_cols=99 Identities=23% Similarity=0.297 Sum_probs=71.9
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhhhcc
Q 008503 71 PLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQAK 150 (563)
Q Consensus 71 ~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 150 (563)
.-+|+|||||.+|+-+|..+++.|.+|+|+++.+.... .
T Consensus 170 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~-----------~------------------------------ 208 (458)
T PRK06912 170 PSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLP-----------G------------------------------ 208 (458)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCc-----------c------------------------------
Confidence 35799999999999999999999999999998752100 0
Q ss_pred cCCcceEEEecCceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccCc
Q 008503 151 DRSLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGP 230 (563)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~ 230 (563)
.+..+...+.+.+++.|++++++++|+++..++ .. +.+.+ +++..++.+|.||+|+|.
T Consensus 209 ---------------~d~e~~~~l~~~L~~~GI~i~~~~~V~~i~~~~--~~---v~~~~--~g~~~~i~~D~vivA~G~ 266 (458)
T PRK06912 209 ---------------EDEDIAHILREKLENDGVKIFTGAALKGLNSYK--KQ---ALFEY--EGSIQEVNAEFVLVSVGR 266 (458)
T ss_pred ---------------ccHHHHHHHHHHHHHCCCEEEECCEEEEEEEcC--CE---EEEEE--CCceEEEEeCEEEEecCC
Confidence 011233355666778899999999999997653 22 33332 344357999999999996
Q ss_pred Ch
Q 008503 231 FC 232 (563)
Q Consensus 231 ~s 232 (563)
..
T Consensus 267 ~p 268 (458)
T PRK06912 267 KP 268 (458)
T ss_pred cc
Confidence 44
No 274
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.88 E-value=0.00014 Score=77.75 Aligned_cols=101 Identities=23% Similarity=0.224 Sum_probs=74.1
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhhhccc
Q 008503 72 LDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQAKD 151 (563)
Q Consensus 72 ~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 151 (563)
-.|+|||||.+|+-+|..|.+.|.+|+++++.+...- +
T Consensus 273 k~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~~~~-~----------------------------------------- 310 (449)
T TIGR01316 273 KSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTREDM-T----------------------------------------- 310 (449)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCcccC-C-----------------------------------------
Confidence 4799999999999999999999999999998742000 0
Q ss_pred CCcceEEEecCceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEEC------C---------CCcE
Q 008503 152 RSLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNN------L---------SGKE 216 (563)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~------~---------~g~~ 216 (563)
.. ....+.+.+.|+++++++.++++..+++ |++++|.+... . ++..
T Consensus 311 -------------~~-----~~~~~~l~~~GV~~~~~~~~~~i~~~~~-g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~ 371 (449)
T TIGR01316 311 -------------AR-----VEEIAHAEEEGVKFHFLCQPVEIIGDEE-GNVRAVKFRKMDCQEQIDSGERRFLPCGDAE 371 (449)
T ss_pred -------------CC-----HHHHHHHHhCCCEEEeccCcEEEEEcCC-CeEEEEEEEEEEecCcCCCCCeeeeecCCce
Confidence 00 0123456678999999999999986544 67888876410 1 2334
Q ss_pred EEEEeCeEEEccCcChh
Q 008503 217 FDTYAKVVVNAAGPFCD 233 (563)
Q Consensus 217 ~~i~A~~VI~AtG~~s~ 233 (563)
..+.+|.||.|.|.-.+
T Consensus 372 ~~i~~D~Vi~AiG~~p~ 388 (449)
T TIGR01316 372 CKLEADAVIVAIGNGSN 388 (449)
T ss_pred EEEECCEEEECCCCCCC
Confidence 57999999999997443
No 275
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.85 E-value=0.00025 Score=76.55 Aligned_cols=102 Identities=13% Similarity=0.118 Sum_probs=74.4
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhhhccc
Q 008503 72 LDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQAKD 151 (563)
Q Consensus 72 ~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 151 (563)
-.|+|||+|.+|+-+|..+++.|.+|+|+++.+.... .
T Consensus 184 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~----------~-------------------------------- 221 (475)
T PRK06327 184 KKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLA----------A-------------------------------- 221 (475)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCC----------c--------------------------------
Confidence 4899999999999999999999999999998752100 0
Q ss_pred CCcceEEEecCceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccCcC
Q 008503 152 RSLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPF 231 (563)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~~ 231 (563)
. +..+...+.+.+++.|++++++++|+++..++ +.+ .+.+.+ .+++..++.+|.||+|+|.-
T Consensus 222 -------------~-d~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~--~~v-~v~~~~-~~g~~~~i~~D~vl~a~G~~ 283 (475)
T PRK06327 222 -------------A-DEQVAKEAAKAFTKQGLDIHLGVKIGEIKTGG--KGV-SVAYTD-ADGEAQTLEVDKLIVSIGRV 283 (475)
T ss_pred -------------C-CHHHHHHHHHHHHHcCcEEEeCcEEEEEEEcC--CEE-EEEEEe-CCCceeEEEcCEEEEccCCc
Confidence 0 12233345566677899999999999998764 333 344443 33544579999999999964
Q ss_pred hh
Q 008503 232 CD 233 (563)
Q Consensus 232 s~ 233 (563)
.+
T Consensus 284 p~ 285 (475)
T PRK06327 284 PN 285 (475)
T ss_pred cC
Confidence 43
No 276
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=97.84 E-value=0.00021 Score=75.28 Aligned_cols=98 Identities=19% Similarity=0.297 Sum_probs=71.7
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhhhccc
Q 008503 72 LDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQAKD 151 (563)
Q Consensus 72 ~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 151 (563)
-+|+|||+|.+|+-+|..|++.|.+|+|||+.+.....
T Consensus 145 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~------------------------------------------ 182 (396)
T PRK09754 145 RSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGR------------------------------------------ 182 (396)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhh------------------------------------------
Confidence 47999999999999999999999999999987521100
Q ss_pred CCcceEEEecCceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccCcC
Q 008503 152 RSLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPF 231 (563)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~~ 231 (563)
..+..+...+.+.+.+.|+++++++.|+++..+ +.+ .+.+ .+|+ ++.+|.||+|+|..
T Consensus 183 -------------~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~---~~~-~v~l---~~g~--~i~aD~Vv~a~G~~ 240 (396)
T PRK09754 183 -------------NAPPPVQRYLLQRHQQAGVRILLNNAIEHVVDG---EKV-ELTL---QSGE--TLQADVVIYGIGIS 240 (396)
T ss_pred -------------hcCHHHHHHHHHHHHHCCCEEEeCCeeEEEEcC---CEE-EEEE---CCCC--EEECCEEEECCCCC
Confidence 011223334566677899999999999998752 233 2433 3443 68999999999986
Q ss_pred hh
Q 008503 232 CD 233 (563)
Q Consensus 232 s~ 233 (563)
.+
T Consensus 241 pn 242 (396)
T PRK09754 241 AN 242 (396)
T ss_pred hh
Confidence 54
No 277
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=97.83 E-value=0.00015 Score=75.85 Aligned_cols=106 Identities=12% Similarity=0.134 Sum_probs=67.0
Q ss_pred ccEEEECCchHHHHHHHHHHHC--CCcEEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhhhc
Q 008503 72 LDILVIGGGATGCGVALDAATR--GLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQA 149 (563)
Q Consensus 72 ~DVvIIGaGiaG~~~A~~la~~--G~~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 149 (563)
.||||||||++|+.+|..|.+. ..+|+||++++...- +...+. .+
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~y----~~~~l~---~~-------------------------- 49 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDEY----NKPDLS---HV-------------------------- 49 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCCc----CcCcCc---HH--------------------------
Confidence 4899999999999999999876 468999998752100 000000 00
Q ss_pred ccCCcceEEEecCceechHHHHH-HHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEcc
Q 008503 150 KDRSLKGAVVYYDGQMNDSRLNV-GLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAA 228 (563)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~l~~-~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~At 228 (563)
..+...+..+.. ...+.+.++|++++.+++|+++..+. +. |.. ++ ..+.+|.||+||
T Consensus 50 -----------~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~~id~~~---~~--v~~----~~--~~~~yd~LVlAT 107 (377)
T PRK04965 50 -----------FSQGQRADDLTRQSAGEFAEQFNLRLFPHTWVTDIDAEA---QV--VKS----QG--NQWQYDKLVLAT 107 (377)
T ss_pred -----------HhCCCCHHHhhcCCHHHHHHhCCCEEECCCEEEEEECCC---CE--EEE----CC--eEEeCCEEEECC
Confidence 001112222222 12334567899999999999997653 22 221 23 378999999999
Q ss_pred CcCh
Q 008503 229 GPFC 232 (563)
Q Consensus 229 G~~s 232 (563)
|...
T Consensus 108 G~~~ 111 (377)
T PRK04965 108 GASA 111 (377)
T ss_pred CCCC
Confidence 9843
No 278
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.83 E-value=0.00011 Score=72.52 Aligned_cols=50 Identities=34% Similarity=0.506 Sum_probs=42.4
Q ss_pred CCCccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCcccc
Q 008503 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHG 119 (563)
Q Consensus 69 ~~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~ 119 (563)
..+||.+|||||-.|++.|+.+++.|.+|.|+|.. +.-|.++-|-|.+.-
T Consensus 18 ~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~-f~lGGTCVn~GCVPK 67 (478)
T KOG0405|consen 18 VKDFDYLVIGGGSGGVASARRAASHGAKVALCELP-FGLGGTCVNVGCVPK 67 (478)
T ss_pred ccccceEEEcCCcchhHHhHHHHhcCceEEEEecC-CCcCceEEeeccccc
Confidence 56899999999999999999999999999999987 455566667666643
No 279
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.82 E-value=0.00016 Score=78.92 Aligned_cols=97 Identities=25% Similarity=0.285 Sum_probs=73.8
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhhhccc
Q 008503 72 LDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQAKD 151 (563)
Q Consensus 72 ~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 151 (563)
-.|+|||||.+|+-+|..|++.|.+|+|+++.+....
T Consensus 353 k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~~------------------------------------------- 389 (515)
T TIGR03140 353 KDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELKA------------------------------------------- 389 (515)
T ss_pred CEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCCh-------------------------------------------
Confidence 4799999999999999999999999999987641100
Q ss_pred CCcceEEEecCceechHHHHHHHHHHHHH-CCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccCc
Q 008503 152 RSLKGAVVYYDGQMNDSRLNVGLALTAAL-AGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGP 230 (563)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~l~~~l~~~a~~-~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~ 230 (563)
...+.+.+.+ .|+++++++.++++..++ +++.+|.+.+..+++...+.+|.||+|+|.
T Consensus 390 -------------------~~~l~~~l~~~~gV~i~~~~~v~~i~~~~--~~v~~v~~~~~~~~~~~~i~~D~vi~a~G~ 448 (515)
T TIGR03140 390 -------------------DKVLQDKLKSLPNVDILTSAQTTEIVGDG--DKVTGIRYQDRNSGEEKQLDLDGVFVQIGL 448 (515)
T ss_pred -------------------hHHHHHHHhcCCCCEEEECCeeEEEEcCC--CEEEEEEEEECCCCcEEEEEcCEEEEEeCC
Confidence 0012333344 699999999999997654 578788887644555567999999999996
Q ss_pred Ch
Q 008503 231 FC 232 (563)
Q Consensus 231 ~s 232 (563)
-.
T Consensus 449 ~P 450 (515)
T TIGR03140 449 VP 450 (515)
T ss_pred cC
Confidence 44
No 280
>PRK13984 putative oxidoreductase; Provisional
Probab=97.82 E-value=4e-05 Score=85.35 Aligned_cols=39 Identities=26% Similarity=0.357 Sum_probs=34.8
Q ss_pred CCccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCC
Q 008503 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSG 108 (563)
Q Consensus 70 ~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g 108 (563)
...+|+|||+|++|+++|..|+++|++|+|+|+.+..+|
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG 320 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGG 320 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCc
Confidence 457899999999999999999999999999999875444
No 281
>PLN02576 protoporphyrinogen oxidase
Probab=97.81 E-value=2.4e-05 Score=85.10 Aligned_cols=40 Identities=30% Similarity=0.520 Sum_probs=35.6
Q ss_pred CCCccEEEECCchHHHHHHHHHHHC-CCcEEEEeccCCCCC
Q 008503 69 SNPLDILVIGGGATGCGVALDAATR-GLRVGLVEREDFSSG 108 (563)
Q Consensus 69 ~~~~DVvIIGaGiaG~~~A~~la~~-G~~V~llEk~~~~~g 108 (563)
..++||+|||||++|+++|+.|++. |++|+|+|+.+..+|
T Consensus 10 ~~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGG 50 (496)
T PLN02576 10 ASSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGG 50 (496)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCC
Confidence 4567999999999999999999999 999999999974444
No 282
>PRK12831 putative oxidoreductase; Provisional
Probab=97.80 E-value=0.00021 Score=76.68 Aligned_cols=101 Identities=20% Similarity=0.199 Sum_probs=73.4
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhhhccc
Q 008503 72 LDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQAKD 151 (563)
Q Consensus 72 ~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 151 (563)
-.|+|||||.+|+-+|..|.+.|.+|+|+++.+... . + .
T Consensus 282 k~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~~~-m---------~---------------a---------------- 320 (464)
T PRK12831 282 KKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSEEE-L---------P---------------A---------------- 320 (464)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCEEEEEeecCccc-C---------C---------------C----------------
Confidence 479999999999999999999999999998864100 0 0 0
Q ss_pred CCcceEEEecCceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEEC------C---------CCcE
Q 008503 152 RSLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNN------L---------SGKE 216 (563)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~------~---------~g~~ 216 (563)
.. ...+.+.+.|+++++++.++.+..+++ |+|.+|.+... . ++..
T Consensus 321 --------------~~-----~e~~~a~~eGV~i~~~~~~~~i~~~~~-g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~ 380 (464)
T PRK12831 321 --------------RV-----EEVHHAKEEGVIFDLLTNPVEILGDEN-GWVKGMKCIKMELGEPDASGRRRPVEIEGSE 380 (464)
T ss_pred --------------CH-----HHHHHHHHcCCEEEecccceEEEecCC-CeEEEEEEEEEEecCcCCCCCccceecCCce
Confidence 00 112335678999999999999987554 78888776411 0 2344
Q ss_pred EEEEeCeEEEccCcChh
Q 008503 217 FDTYAKVVVNAAGPFCD 233 (563)
Q Consensus 217 ~~i~A~~VI~AtG~~s~ 233 (563)
..+.+|.||.|.|.-.+
T Consensus 381 ~~i~~D~Vi~AiG~~p~ 397 (464)
T PRK12831 381 FVLEVDTVIMSLGTSPN 397 (464)
T ss_pred EEEECCEEEECCCCCCC
Confidence 57999999999997543
No 283
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=97.79 E-value=2.7e-05 Score=80.60 Aligned_cols=37 Identities=30% Similarity=0.441 Sum_probs=33.8
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCC
Q 008503 72 LDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSG 108 (563)
Q Consensus 72 ~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g 108 (563)
+||+|||||++|+++|+.|++.|.+|+|||+++..+|
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG 38 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGG 38 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCC
Confidence 7999999999999999999999999999999865444
No 284
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=97.78 E-value=0.00012 Score=77.90 Aligned_cols=114 Identities=14% Similarity=0.107 Sum_probs=70.1
Q ss_pred CCccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhhhc
Q 008503 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQA 149 (563)
Q Consensus 70 ~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 149 (563)
...+|||||||.+|+.+|..|...+++|+|||+.+...- .+. +..
T Consensus 9 ~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~~---------~~~---l~~----------------------- 53 (424)
T PTZ00318 9 KKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHMLF---------TPL---LPQ----------------------- 53 (424)
T ss_pred CCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcch---------hhh---HHH-----------------------
Confidence 456999999999999999999877899999998752110 000 000
Q ss_pred ccCCcceEEEecCceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECC---CCcEEEEEeCeEEE
Q 008503 150 KDRSLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNL---SGKEFDTYAKVVVN 226 (563)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~---~g~~~~i~A~~VI~ 226 (563)
...+..++..+...+...+...|++++. .+|++|..++ ..|. +...+.. ++...++.+|++|+
T Consensus 54 ----------~~~g~~~~~~~~~~~~~~~~~~~~~~i~-~~V~~Id~~~--~~v~-~~~~~~~~~~~~~g~~i~yD~LVi 119 (424)
T PTZ00318 54 ----------TTTGTLEFRSICEPVRPALAKLPNRYLR-AVVYDVDFEE--KRVK-CGVVSKSNNANVNTFSVPYDKLVV 119 (424)
T ss_pred ----------hcccCCChHHhHHHHHHHhccCCeEEEE-EEEEEEEcCC--CEEE-EecccccccccCCceEecCCEEEE
Confidence 0112223333444455555567888765 5899997764 2332 2111000 12234799999999
Q ss_pred ccCcCh
Q 008503 227 AAGPFC 232 (563)
Q Consensus 227 AtG~~s 232 (563)
|+|...
T Consensus 120 AtGs~~ 125 (424)
T PTZ00318 120 AHGARP 125 (424)
T ss_pred CCCccc
Confidence 999854
No 285
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=97.77 E-value=6e-05 Score=86.11 Aligned_cols=56 Identities=5% Similarity=0.032 Sum_probs=47.4
Q ss_pred CccccCCCccHHHHHHHHHhcCCCChhHHHHhhcccccCChHHHhhhHHHHHHHHHHHcCC
Q 008503 470 KRLAHGYPFLEAEVAYCARNEYCESAVDFVARRCRLAFLDTDAAGRALPRIIEIMATEHKW 530 (563)
Q Consensus 470 ~~~~~c~~v~~~ei~~ai~~e~~~~~~D~l~rRtr~g~g~~~~g~~~~~~v~~~la~~l~~ 530 (563)
.-++.|+.||+++|+.||+. .+++..+.|+++|++|.+ |.+ |.+.|.++|.++++-
T Consensus 410 ~~vC~C~~Vt~~~i~~ai~~-~~~~~~~~v~~~t~ag~~--Cg~--C~~~~~~il~~~~~~ 465 (785)
T TIGR02374 410 EQICSCNTVTKGAIIDAIHT-GSCTTVEELKACTKAGTS--CGG--CKPLVEQLLRAELNS 465 (785)
T ss_pred CEEeeCCCCcHHHHHHHHHh-CCCCCHHHHHHhCCCCCC--CcC--HHHHHHHHHHHHHhh
Confidence 44556999999999999986 447788889999999985 855 999999999887773
No 286
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=97.76 E-value=0.00031 Score=70.72 Aligned_cols=97 Identities=25% Similarity=0.276 Sum_probs=72.8
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhhhcc
Q 008503 71 PLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQAK 150 (563)
Q Consensus 71 ~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 150 (563)
.-.|+|||+|.+|+-+|..|++.+.+|.++++.+... .
T Consensus 141 ~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~-----~------------------------------------- 178 (300)
T TIGR01292 141 NKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFR-----A------------------------------------- 178 (300)
T ss_pred CCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcccC-----c-------------------------------------
Confidence 3589999999999999999999999999999863100 0
Q ss_pred cCCcceEEEecCceechHHHHHHHHHHHHHC-CCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccC
Q 008503 151 DRSLKGAVVYYDGQMNDSRLNVGLALTAALA-GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAG 229 (563)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~-G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG 229 (563)
. ..+.+.+.+. |+++++++.++++..+ +++.++.+.+..+++..++.+|.||.|+|
T Consensus 179 ---------------~-----~~~~~~l~~~~gv~~~~~~~v~~i~~~---~~~~~v~~~~~~~g~~~~i~~D~vi~a~G 235 (300)
T TIGR01292 179 ---------------E-----KILLDRLRKNPNIEFLWNSTVKEIVGD---NKVEGVKIKNTVTGEEEELKVDGVFIAIG 235 (300)
T ss_pred ---------------C-----HHHHHHHHhCCCeEEEeccEEEEEEcc---CcEEEEEEEecCCCceEEEEccEEEEeeC
Confidence 0 0123344556 9999999999999754 35667776654456667899999999999
Q ss_pred cCh
Q 008503 230 PFC 232 (563)
Q Consensus 230 ~~s 232 (563)
.-.
T Consensus 236 ~~~ 238 (300)
T TIGR01292 236 HEP 238 (300)
T ss_pred CCC
Confidence 543
No 287
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=97.76 E-value=0.00035 Score=75.20 Aligned_cols=99 Identities=22% Similarity=0.338 Sum_probs=72.5
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhhhcc
Q 008503 71 PLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQAK 150 (563)
Q Consensus 71 ~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 150 (563)
.-.|+|||||.+|+-+|..+++.|.+|+|+|+.+.... .
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~-----------~------------------------------ 213 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLS-----------F------------------------------ 213 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCC-----------c------------------------------
Confidence 45799999999999999999999999999999751100 0
Q ss_pred cCCcceEEEecCceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccCc
Q 008503 151 DRSLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGP 230 (563)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~ 230 (563)
+ +..+...+.+.+++.|++++++++|+++..++ +.+ .+.. .+++ ++.+|.||+|+|.
T Consensus 214 --------------~-d~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~--~~~-~v~~---~~g~--~i~~D~vi~a~G~ 270 (461)
T PRK05249 214 --------------L-DDEISDALSYHLRDSGVTIRHNEEVEKVEGGD--DGV-IVHL---KSGK--KIKADCLLYANGR 270 (461)
T ss_pred --------------C-CHHHHHHHHHHHHHcCCEEEECCEEEEEEEeC--CeE-EEEE---CCCC--EEEeCEEEEeecC
Confidence 0 11233456666778899999999999998754 232 2322 2343 6899999999997
Q ss_pred Chh
Q 008503 231 FCD 233 (563)
Q Consensus 231 ~s~ 233 (563)
..+
T Consensus 271 ~p~ 273 (461)
T PRK05249 271 TGN 273 (461)
T ss_pred Ccc
Confidence 543
No 288
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=97.75 E-value=0.00042 Score=74.22 Aligned_cols=100 Identities=16% Similarity=0.129 Sum_probs=72.5
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhhhccc
Q 008503 72 LDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQAKD 151 (563)
Q Consensus 72 ~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 151 (563)
-.|+|||||.+|+-.|..+++.|.+|+||++.+....
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~------------------------------------------- 203 (450)
T TIGR01421 167 KRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLR------------------------------------------- 203 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCc-------------------------------------------
Confidence 5799999999999999999999999999998752100
Q ss_pred CCcceEEEecCceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccCcC
Q 008503 152 RSLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPF 231 (563)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~~ 231 (563)
.+ +..+...+.+.+++.|+++++++.|+++..+++ +.+ .+.+ .+++ ..+.+|.||+|+|.-
T Consensus 204 ------------~~-d~~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~-~~~-~v~~---~~g~-~~i~~D~vi~a~G~~ 264 (450)
T TIGR01421 204 ------------SF-DSMISETITEEYEKEGINVHKLSKPVKVEKTVE-GKL-VIHF---EDGK-SIDDVDELIWAIGRK 264 (450)
T ss_pred ------------cc-CHHHHHHHHHHHHHcCCEEEcCCEEEEEEEeCC-ceE-EEEE---CCCc-EEEEcCEEEEeeCCC
Confidence 00 112333556667789999999999999986542 222 3433 2332 469999999999975
Q ss_pred hh
Q 008503 232 CD 233 (563)
Q Consensus 232 s~ 233 (563)
.+
T Consensus 265 pn 266 (450)
T TIGR01421 265 PN 266 (450)
T ss_pred cC
Confidence 43
No 289
>PLN02268 probable polyamine oxidase
Probab=97.74 E-value=3.3e-05 Score=82.49 Aligned_cols=37 Identities=32% Similarity=0.525 Sum_probs=33.7
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCC
Q 008503 72 LDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSG 108 (563)
Q Consensus 72 ~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g 108 (563)
.+|+|||||++|+++|+.|.+.|++|+|+|+.+..+|
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GG 37 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGG 37 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCc
Confidence 3799999999999999999999999999999975555
No 290
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.73 E-value=0.00034 Score=74.77 Aligned_cols=97 Identities=15% Similarity=0.126 Sum_probs=69.9
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhhhcc
Q 008503 71 PLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQAK 150 (563)
Q Consensus 71 ~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 150 (563)
.-.|+|||||.+|+.+|..+++.|.+|+|+|+.+.... .
T Consensus 157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~-----------~------------------------------ 195 (438)
T PRK07251 157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILP-----------R------------------------------ 195 (438)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCC-----------C------------------------------
Confidence 34799999999999999999999999999999752110 0
Q ss_pred cCCcceEEEecCceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccCc
Q 008503 151 DRSLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGP 230 (563)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~ 230 (563)
. +..+...+.+.+++.|++++++++|+++..++ +.+ .+.+ ++ .++.+|.||+|+|.
T Consensus 196 --------------~-~~~~~~~~~~~l~~~GI~i~~~~~V~~i~~~~--~~v---~v~~--~g--~~i~~D~viva~G~ 251 (438)
T PRK07251 196 --------------E-EPSVAALAKQYMEEDGITFLLNAHTTEVKNDG--DQV---LVVT--ED--ETYRFDALLYATGR 251 (438)
T ss_pred --------------C-CHHHHHHHHHHHHHcCCEEEcCCEEEEEEecC--CEE---EEEE--CC--eEEEcCEEEEeeCC
Confidence 0 01122234455678899999999999997653 333 2222 23 36999999999997
Q ss_pred Ch
Q 008503 231 FC 232 (563)
Q Consensus 231 ~s 232 (563)
-.
T Consensus 252 ~p 253 (438)
T PRK07251 252 KP 253 (438)
T ss_pred CC
Confidence 44
No 291
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=97.72 E-value=0.00018 Score=74.55 Aligned_cols=100 Identities=33% Similarity=0.341 Sum_probs=74.0
Q ss_pred ccEEEECCchHHHHHHHHHHHCC-------------CcEEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHHH
Q 008503 72 LDILVIGGGATGCGVALDAATRG-------------LRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKL 138 (563)
Q Consensus 72 ~DVvIIGaGiaG~~~A~~la~~G-------------~~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 138 (563)
-+++|||||++|.-.|-+|+++- ++|.|||+.+.--
T Consensus 156 lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~IL------------------------------- 204 (405)
T COG1252 156 LTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRIL------------------------------- 204 (405)
T ss_pred eEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhc-------------------------------
Confidence 47999999999999999998652 3899999885100
Q ss_pred HHHHHHHhhhcccCCcceEEEecCceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEE
Q 008503 139 VFHALEERKQAKDRSLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFD 218 (563)
Q Consensus 139 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~ 218 (563)
...+.++.....+.+++.|+++++++.|+++..+ +|++ .+++. +
T Consensus 205 -------------------------p~~~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~~-------~v~~---~~g~~-~ 248 (405)
T COG1252 205 -------------------------PMFPPKLSKYAERALEKLGVEVLLGTPVTEVTPD-------GVTL---KDGEE-E 248 (405)
T ss_pred -------------------------cCCCHHHHHHHHHHHHHCCCEEEcCCceEEECCC-------cEEE---ccCCe-e
Confidence 0123344555666778899999999999999765 2444 23432 6
Q ss_pred EEeCeEEEccCcChhhhhhh
Q 008503 219 TYAKVVVNAAGPFCDSVRKL 238 (563)
Q Consensus 219 i~A~~VI~AtG~~s~~l~~~ 238 (563)
|.++.||-|+|.-+..+.+.
T Consensus 249 I~~~tvvWaaGv~a~~~~~~ 268 (405)
T COG1252 249 IPADTVVWAAGVRASPLLKD 268 (405)
T ss_pred EecCEEEEcCCCcCChhhhh
Confidence 99999999999987776654
No 292
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.70 E-value=0.00038 Score=75.98 Aligned_cols=97 Identities=20% Similarity=0.238 Sum_probs=74.7
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhhhccc
Q 008503 72 LDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQAKD 151 (563)
Q Consensus 72 ~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 151 (563)
-+|+|||||.+|+-+|..|+..|.+|+|+++.+... ..
T Consensus 352 k~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~-----~~------------------------------------- 389 (517)
T PRK15317 352 KRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELK-----AD------------------------------------- 389 (517)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCEEEEEEECcccc-----cc-------------------------------------
Confidence 479999999999999999999999999998874110 00
Q ss_pred CCcceEEEecCceechHHHHHHHHHHHHH-CCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccCc
Q 008503 152 RSLKGAVVYYDGQMNDSRLNVGLALTAAL-AGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGP 230 (563)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~l~~~l~~~a~~-~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~ 230 (563)
..+.+...+ .|+++++++.++++..++ +++.++.+.+..+++..++.+|.|++|.|.
T Consensus 390 --------------------~~l~~~l~~~~gI~i~~~~~v~~i~~~~--g~v~~v~~~~~~~g~~~~i~~D~v~~~~G~ 447 (517)
T PRK15317 390 --------------------QVLQDKLRSLPNVTIITNAQTTEVTGDG--DKVTGLTYKDRTTGEEHHLELEGVFVQIGL 447 (517)
T ss_pred --------------------HHHHHHHhcCCCcEEEECcEEEEEEcCC--CcEEEEEEEECCCCcEEEEEcCEEEEeECC
Confidence 012222333 699999999999998664 688888887755666568999999999997
Q ss_pred Ch
Q 008503 231 FC 232 (563)
Q Consensus 231 ~s 232 (563)
-.
T Consensus 448 ~p 449 (517)
T PRK15317 448 VP 449 (517)
T ss_pred cc
Confidence 54
No 293
>PRK06116 glutathione reductase; Validated
Probab=97.70 E-value=0.00054 Score=73.51 Aligned_cols=99 Identities=17% Similarity=0.137 Sum_probs=72.2
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhhhcc
Q 008503 71 PLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQAK 150 (563)
Q Consensus 71 ~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 150 (563)
.-.|+|||+|.+|+-+|..|++.|.+|+++++.+.... .
T Consensus 167 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~----~------------------------------------- 205 (450)
T PRK06116 167 PKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLR----G------------------------------------- 205 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCcc----c-------------------------------------
Confidence 35799999999999999999999999999998752100 0
Q ss_pred cCCcceEEEecCceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccCc
Q 008503 151 DRSLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGP 230 (563)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~ 230 (563)
. +..+...+.+.+++.|++++++++|.++..+++ +.+ .+.. .+| .++.+|.||+|+|.
T Consensus 206 --------------~-~~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~-g~~-~v~~---~~g--~~i~~D~Vv~a~G~ 263 (450)
T PRK06116 206 --------------F-DPDIRETLVEEMEKKGIRLHTNAVPKAVEKNAD-GSL-TLTL---EDG--ETLTVDCLIWAIGR 263 (450)
T ss_pred --------------c-CHHHHHHHHHHHHHCCcEEECCCEEEEEEEcCC-ceE-EEEE---cCC--cEEEeCEEEEeeCC
Confidence 0 112233556667789999999999999987643 323 2333 234 36899999999996
Q ss_pred Ch
Q 008503 231 FC 232 (563)
Q Consensus 231 ~s 232 (563)
-.
T Consensus 264 ~p 265 (450)
T PRK06116 264 EP 265 (450)
T ss_pred Cc
Confidence 43
No 294
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.69 E-value=0.00057 Score=73.69 Aligned_cols=100 Identities=18% Similarity=0.146 Sum_probs=70.7
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhhhccc
Q 008503 72 LDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQAKD 151 (563)
Q Consensus 72 ~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 151 (563)
-+|+|||||.+|+-.|..+++.|.+|+|||+.+.... .
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~-----------~------------------------------- 212 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIP-----------A------------------------------- 212 (471)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCC-----------c-------------------------------
Confidence 4799999999999999999999999999998752100 0
Q ss_pred CCcceEEEecCceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccCcC
Q 008503 152 RSLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPF 231 (563)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~~ 231 (563)
. +..+...+.+.+++. +++++++.|+.+..++ +.+ .+.+.+ .+++..++.+|.||+|+|.-
T Consensus 213 -------------~-d~~~~~~~~~~l~~~-v~i~~~~~v~~i~~~~--~~~-~v~~~~-~~~~~~~i~~D~vi~a~G~~ 273 (471)
T PRK06467 213 -------------A-DKDIVKVFTKRIKKQ-FNIMLETKVTAVEAKE--DGI-YVTMEG-KKAPAEPQRYDAVLVAVGRV 273 (471)
T ss_pred -------------C-CHHHHHHHHHHHhhc-eEEEcCCEEEEEEEcC--CEE-EEEEEe-CCCcceEEEeCEEEEeeccc
Confidence 0 112223445555566 9999999999998654 233 344433 22323579999999999974
Q ss_pred h
Q 008503 232 C 232 (563)
Q Consensus 232 s 232 (563)
.
T Consensus 274 p 274 (471)
T PRK06467 274 P 274 (471)
T ss_pred c
Confidence 4
No 295
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=97.67 E-value=4.2e-05 Score=81.99 Aligned_cols=36 Identities=33% Similarity=0.575 Sum_probs=32.5
Q ss_pred cEEEECCchHHHHHHHHHHHCC--CcEEEEeccCCCCC
Q 008503 73 DILVIGGGATGCGVALDAATRG--LRVGLVEREDFSSG 108 (563)
Q Consensus 73 DVvIIGaGiaG~~~A~~la~~G--~~V~llEk~~~~~g 108 (563)
+|+|||||++|+++|+.|+++| ++|+|+|+.+..+|
T Consensus 2 ~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GG 39 (451)
T PRK11883 2 KVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGG 39 (451)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcc
Confidence 6999999999999999999988 89999999875444
No 296
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=97.67 E-value=0.00011 Score=83.17 Aligned_cols=37 Identities=22% Similarity=0.324 Sum_probs=33.5
Q ss_pred CCCccEEEECCchHHHHHHHHHHHCCCcEEEEeccCC
Q 008503 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDF 105 (563)
Q Consensus 69 ~~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~ 105 (563)
.....|+|||||++|+++|+.|+++|++|+|+|+.+.
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i 417 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKI 417 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccccc
Confidence 3457899999999999999999999999999999753
No 297
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=97.67 E-value=4.5e-05 Score=82.07 Aligned_cols=37 Identities=30% Similarity=0.472 Sum_probs=33.6
Q ss_pred ccEEEECCchHHHHHHHHHHHC----CCcEEEEeccCCCCC
Q 008503 72 LDILVIGGGATGCGVALDAATR----GLRVGLVEREDFSSG 108 (563)
Q Consensus 72 ~DVvIIGaGiaG~~~A~~la~~----G~~V~llEk~~~~~g 108 (563)
.||+|||||++|+++|+.|+++ |++|+|+|+++..+|
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG 43 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGG 43 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcc
Confidence 5999999999999999999999 999999999874444
No 298
>PRK14727 putative mercuric reductase; Provisional
Probab=97.66 E-value=0.00068 Score=73.30 Aligned_cols=97 Identities=21% Similarity=0.224 Sum_probs=70.8
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhhhccc
Q 008503 72 LDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQAKD 151 (563)
Q Consensus 72 ~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 151 (563)
-.|+|||+|.+|+-.|..+++.|.+|+|+++..+...
T Consensus 189 k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~~l~~------------------------------------------- 225 (479)
T PRK14727 189 ASLTVIGSSVVAAEIAQAYARLGSRVTILARSTLLFR------------------------------------------- 225 (479)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCCCc-------------------------------------------
Confidence 4799999999999999999999999999987532100
Q ss_pred CCcceEEEecCceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccCcC
Q 008503 152 RSLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPF 231 (563)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~~ 231 (563)
. +..+...+.+.+++.|++++++++|+.+..++ +. +.+.. .+ .++.++.||+|+|..
T Consensus 226 -------------~-d~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~--~~---~~v~~-~~---g~i~aD~VlvA~G~~ 282 (479)
T PRK14727 226 -------------E-DPLLGETLTACFEKEGIEVLNNTQASLVEHDD--NG---FVLTT-GH---GELRAEKLLISTGRH 282 (479)
T ss_pred -------------c-hHHHHHHHHHHHHhCCCEEEcCcEEEEEEEeC--CE---EEEEE-cC---CeEEeCEEEEccCCC
Confidence 0 11233356666778999999999999998654 22 22322 12 258899999999987
Q ss_pred hhh
Q 008503 232 CDS 234 (563)
Q Consensus 232 s~~ 234 (563)
.+.
T Consensus 283 pn~ 285 (479)
T PRK14727 283 ANT 285 (479)
T ss_pred CCc
Confidence 643
No 299
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=97.66 E-value=0.00044 Score=74.06 Aligned_cols=99 Identities=22% Similarity=0.215 Sum_probs=72.2
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhhhcc
Q 008503 71 PLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQAK 150 (563)
Q Consensus 71 ~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 150 (563)
.-.|+|||||.+|+-+|..+.+.|.+|.++++.+.... .
T Consensus 149 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~----------~------------------------------- 187 (444)
T PRK09564 149 IKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILP----------D------------------------------- 187 (444)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCc----------h-------------------------------
Confidence 35899999999999999999999999999988641100 0
Q ss_pred cCCcceEEEecCceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccCc
Q 008503 151 DRSLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGP 230 (563)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~ 230 (563)
.+ +..+...+.+.+++.|++++++++|+++..+ +++..+.. ++ .++.+|.||+|+|.
T Consensus 188 -------------~~-~~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~---~~~~~v~~----~~--~~i~~d~vi~a~G~ 244 (444)
T PRK09564 188 -------------SF-DKEITDVMEEELRENGVELHLNEFVKSLIGE---DKVEGVVT----DK--GEYEADVVIVATGV 244 (444)
T ss_pred -------------hc-CHHHHHHHHHHHHHCCCEEEcCCEEEEEecC---CcEEEEEe----CC--CEEEcCEEEECcCC
Confidence 00 1233345666777899999999999999643 45544432 22 26999999999997
Q ss_pred Chh
Q 008503 231 FCD 233 (563)
Q Consensus 231 ~s~ 233 (563)
...
T Consensus 245 ~p~ 247 (444)
T PRK09564 245 KPN 247 (444)
T ss_pred CcC
Confidence 643
No 300
>PTZ00058 glutathione reductase; Provisional
Probab=97.66 E-value=0.00051 Score=75.20 Aligned_cols=99 Identities=14% Similarity=0.095 Sum_probs=70.9
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhhhcc
Q 008503 71 PLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQAK 150 (563)
Q Consensus 71 ~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 150 (563)
.-.|+|||||.+|+-.|..+++.|.+|+|+++.+.... .
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il~-----------~------------------------------ 275 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLLR-----------K------------------------------ 275 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEecccccc-----------c------------------------------
Confidence 45799999999999999999999999999998751000 0
Q ss_pred cCCcceEEEecCceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccCc
Q 008503 151 DRSLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGP 230 (563)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~ 230 (563)
+ +..+...+.+.+++.|+++++++.|.++..+++ +.+. +.. .++ ..++.+|.||+|+|.
T Consensus 276 --------------~-d~~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~-~~v~-v~~---~~~-~~~i~aD~VlvA~Gr 334 (561)
T PTZ00058 276 --------------F-DETIINELENDMKKNNINIITHANVEEIEKVKE-KNLT-IYL---SDG-RKYEHFDYVIYCVGR 334 (561)
T ss_pred --------------C-CHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCC-CcEE-EEE---CCC-CEEEECCEEEECcCC
Confidence 0 112233456667789999999999999986542 2332 222 122 246999999999996
Q ss_pred C
Q 008503 231 F 231 (563)
Q Consensus 231 ~ 231 (563)
-
T Consensus 335 ~ 335 (561)
T PTZ00058 335 S 335 (561)
T ss_pred C
Confidence 3
No 301
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=97.66 E-value=4.8e-05 Score=79.64 Aligned_cols=36 Identities=31% Similarity=0.461 Sum_probs=33.8
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCC
Q 008503 73 DILVIGGGATGCGVALDAATRGLRVGLVEREDFSSG 108 (563)
Q Consensus 73 DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g 108 (563)
.|+|+|||++|++||++|+++|++|+|+|+++..+|
T Consensus 2 rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GG 37 (485)
T COG3349 2 RVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGG 37 (485)
T ss_pred eEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCc
Confidence 599999999999999999999999999999987665
No 302
>PRK10262 thioredoxin reductase; Provisional
Probab=97.64 E-value=0.0006 Score=69.65 Aligned_cols=102 Identities=21% Similarity=0.172 Sum_probs=75.0
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhhhccc
Q 008503 72 LDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQAKD 151 (563)
Q Consensus 72 ~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 151 (563)
-.|+|||+|.+|+-+|..|++.|.+|+++++.+.... +
T Consensus 147 ~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~~--------------------------~---------------- 184 (321)
T PRK10262 147 QKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRA--------------------------E---------------- 184 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccCC--------------------------C----------------
Confidence 4799999999999999999999999999998741100 0
Q ss_pred CCcceEEEecCceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECC-CCcEEEEEeCeEEEccCc
Q 008503 152 RSLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNL-SGKEFDTYAKVVVNAAGP 230 (563)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~-~g~~~~i~A~~VI~AtG~ 230 (563)
..+...+.+.+++.|+++++++.++++..++ +++.+|++.+.. ++...++.+|.||.|+|.
T Consensus 185 ----------------~~~~~~~~~~l~~~gV~i~~~~~v~~v~~~~--~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~ 246 (321)
T PRK10262 185 ----------------KILIKRLMDKVENGNIILHTNRTLEEVTGDQ--MGVTGVRLRDTQNSDNIESLDVAGLFVAIGH 246 (321)
T ss_pred ----------------HHHHHHHHhhccCCCeEEEeCCEEEEEEcCC--ccEEEEEEEEcCCCCeEEEEECCEEEEEeCC
Confidence 0011234555667899999999999997653 467778776522 233357999999999997
Q ss_pred Chh
Q 008503 231 FCD 233 (563)
Q Consensus 231 ~s~ 233 (563)
-.+
T Consensus 247 ~p~ 249 (321)
T PRK10262 247 SPN 249 (321)
T ss_pred ccC
Confidence 543
No 303
>PLN02507 glutathione reductase
Probab=97.63 E-value=0.0007 Score=73.47 Aligned_cols=98 Identities=24% Similarity=0.253 Sum_probs=71.1
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhhhcc
Q 008503 71 PLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQAK 150 (563)
Q Consensus 71 ~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 150 (563)
.-.|+|||||.+|+-.|..+++.|.+|+|+++.+.... +
T Consensus 203 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l~-----------~------------------------------ 241 (499)
T PLN02507 203 PKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLR-----------G------------------------------ 241 (499)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcCc-----------c------------------------------
Confidence 35799999999999999999999999999998752100 0
Q ss_pred cCCcceEEEecCceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccCc
Q 008503 151 DRSLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGP 230 (563)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~ 230 (563)
+ +..+...+.+.+++.|+++++++.|.++..++ +.+ .+. . .++ .++.+|.||+|+|.
T Consensus 242 --------------~-d~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~~--~~~-~v~--~-~~g--~~i~~D~vl~a~G~ 298 (499)
T PLN02507 242 --------------F-DDEMRAVVARNLEGRGINLHPRTNLTQLTKTE--GGI-KVI--T-DHG--EEFVADVVLFATGR 298 (499)
T ss_pred --------------c-CHHHHHHHHHHHHhCCCEEEeCCEEEEEEEeC--CeE-EEE--E-CCC--cEEEcCEEEEeecC
Confidence 0 11223345566678899999999999998654 233 232 2 233 36999999999996
Q ss_pred Ch
Q 008503 231 FC 232 (563)
Q Consensus 231 ~s 232 (563)
-.
T Consensus 299 ~p 300 (499)
T PLN02507 299 AP 300 (499)
T ss_pred CC
Confidence 44
No 304
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.62 E-value=0.00074 Score=72.97 Aligned_cols=99 Identities=18% Similarity=0.122 Sum_probs=70.6
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhhhccc
Q 008503 72 LDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQAKD 151 (563)
Q Consensus 72 ~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 151 (563)
-.++|||||.+|+-.|..+++.|.+|+|+++..+...
T Consensus 181 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l~~------------------------------------------- 217 (484)
T TIGR01438 181 GKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRG------------------------------------------- 217 (484)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCcEEEEEecccccc-------------------------------------------
Confidence 4699999999999999999999999999987422110
Q ss_pred CCcceEEEecCceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccCcC
Q 008503 152 RSLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPF 231 (563)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~~ 231 (563)
+ +..+...+.+.+++.|+++++++.+.++...+ +.+ .|.+.+ .+...++.+|.||+|+|.-
T Consensus 218 -------------~-d~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~--~~~-~v~~~~--~~~~~~i~~D~vl~a~G~~ 278 (484)
T TIGR01438 218 -------------F-DQDCANKVGEHMEEHGVKFKRQFVPIKVEQIE--AKV-KVTFTD--STNGIEEEYDTVLLAIGRD 278 (484)
T ss_pred -------------c-CHHHHHHHHHHHHHcCCEEEeCceEEEEEEcC--CeE-EEEEec--CCcceEEEeCEEEEEecCC
Confidence 0 11223345566778899999999999987654 333 344432 1112479999999999964
Q ss_pred h
Q 008503 232 C 232 (563)
Q Consensus 232 s 232 (563)
.
T Consensus 279 p 279 (484)
T TIGR01438 279 A 279 (484)
T ss_pred c
Confidence 3
No 305
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.61 E-value=0.00081 Score=71.93 Aligned_cols=97 Identities=19% Similarity=0.215 Sum_probs=71.4
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhhhccc
Q 008503 72 LDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQAKD 151 (563)
Q Consensus 72 ~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 151 (563)
-.|+|||+|.+|+-.|..|++.|.+|+|+++.+.... .
T Consensus 159 ~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~-----------~------------------------------- 196 (441)
T PRK08010 159 GHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLP-----------R------------------------------- 196 (441)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCC-----------C-------------------------------
Confidence 4799999999999999999999999999998741100 0
Q ss_pred CCcceEEEecCceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccCcC
Q 008503 152 RSLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPF 231 (563)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~~ 231 (563)
. +..+...+.+.+++.|+++++++.|.++..++ +.+ .+.. ++ .++.+|.||+|+|..
T Consensus 197 -------------~-~~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~--~~v---~v~~--~~--g~i~~D~vl~a~G~~ 253 (441)
T PRK08010 197 -------------E-DRDIADNIATILRDQGVDIILNAHVERISHHE--NQV---QVHS--EH--AQLAVDALLIASGRQ 253 (441)
T ss_pred -------------c-CHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcC--CEE---EEEE--cC--CeEEeCEEEEeecCC
Confidence 0 12233356667788999999999999998764 333 2322 12 258899999999986
Q ss_pred hh
Q 008503 232 CD 233 (563)
Q Consensus 232 s~ 233 (563)
.+
T Consensus 254 pn 255 (441)
T PRK08010 254 PA 255 (441)
T ss_pred cC
Confidence 54
No 306
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=97.59 E-value=0.00022 Score=81.69 Aligned_cols=53 Identities=6% Similarity=0.130 Sum_probs=46.9
Q ss_pred ccccCCCccHHHHHHHHHhcCCCChhHHHHhhcccccCChHHHhhhHHHHHHHHHHHcC
Q 008503 471 RLAHGYPFLEAEVAYCARNEYCESAVDFVARRCRLAFLDTDAAGRALPRIIEIMATEHK 529 (563)
Q Consensus 471 ~~~~c~~v~~~ei~~ai~~e~~~~~~D~l~rRtr~g~g~~~~g~~~~~~v~~~la~~l~ 529 (563)
-++.|+.||+++|+.||+. +++.++.|++.|++|++ |++ |.+.|.++|..+++
T Consensus 423 ~iC~C~~Vt~~~i~~ai~~--g~~~~~~v~~~t~agt~--Cg~--C~~~v~~~l~~~~~ 475 (847)
T PRK14989 423 QICSCFDVTKGDLIAAINK--GCHTVAALKAETKAGTG--CGG--CIPLVTQVLNAELA 475 (847)
T ss_pred EEEEeecccHHHHHHHHHh--CCCCHHHHHhhCcCCCC--CcC--HHHHHHHHHHHHHH
Confidence 4456999999999999986 77888889999999997 877 99999999988776
No 307
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=97.59 E-value=0.00088 Score=71.77 Aligned_cols=98 Identities=24% Similarity=0.305 Sum_probs=70.6
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhhhcc
Q 008503 71 PLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQAK 150 (563)
Q Consensus 71 ~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 150 (563)
.-.|+|||+|.+|+-.|..+++.|.+|.++++.+.... +
T Consensus 166 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~-----------~------------------------------ 204 (446)
T TIGR01424 166 PKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELILR-----------G------------------------------ 204 (446)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCc-----------c------------------------------
Confidence 34799999999999999999999999999998742100 0
Q ss_pred cCCcceEEEecCceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccCc
Q 008503 151 DRSLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGP 230 (563)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~ 230 (563)
+ +..+...+.+.+.+.|+++++++.|+++..+++ .+ .+.. .++ .++.+|.||+|+|.
T Consensus 205 --------------~-d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~--~~-~v~~---~~g--~~i~~D~viva~G~ 261 (446)
T TIGR01424 205 --------------F-DDDMRALLARNMEGRGIRIHPQTSLTSITKTDD--GL-KVTL---SHG--EEIVADVVLFATGR 261 (446)
T ss_pred --------------c-CHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCC--eE-EEEE---cCC--cEeecCEEEEeeCC
Confidence 0 112223455666788999999999999986543 22 2332 233 36899999999997
Q ss_pred Ch
Q 008503 231 FC 232 (563)
Q Consensus 231 ~s 232 (563)
..
T Consensus 262 ~p 263 (446)
T TIGR01424 262 SP 263 (446)
T ss_pred Cc
Confidence 43
No 308
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=97.58 E-value=0.00069 Score=72.78 Aligned_cols=101 Identities=26% Similarity=0.334 Sum_probs=72.3
Q ss_pred CccEEEECCchHHHHHHHHHHHCCC-cEEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhhhc
Q 008503 71 PLDILVIGGGATGCGVALDAATRGL-RVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQA 149 (563)
Q Consensus 71 ~~DVvIIGaGiaG~~~A~~la~~G~-~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 149 (563)
.-.|+|||||.+|+-+|..|++.|. +|+++++.+... + +.
T Consensus 273 g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~~---------~-~~----------------------------- 313 (457)
T PRK11749 273 GKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGREE---------M-PA----------------------------- 313 (457)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCccc---------C-CC-----------------------------
Confidence 3479999999999999999999998 899999863210 0 00
Q ss_pred ccCCcceEEEecCceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEEC--------------CCCc
Q 008503 150 KDRSLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNN--------------LSGK 215 (563)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~--------------~~g~ 215 (563)
.+ ...+.+.+.|+++++++.+..+..++ +.+.+|.+... .++.
T Consensus 314 ----------------~~-----~~~~~~~~~GV~i~~~~~v~~i~~~~--~~~~~v~~~~~~~~~~~~~g~~~~~~~g~ 370 (457)
T PRK11749 314 ----------------SE-----EEVEHAKEEGVEFEWLAAPVEILGDE--GRVTGVEFVRMELGEPDASGRRRVPIEGS 370 (457)
T ss_pred ----------------CH-----HHHHHHHHCCCEEEecCCcEEEEecC--CceEEEEEEEEEecCcCCCCCcccCCCCc
Confidence 00 12344567899999999999997654 45566665421 1234
Q ss_pred EEEEEeCeEEEccCcChh
Q 008503 216 EFDTYAKVVVNAAGPFCD 233 (563)
Q Consensus 216 ~~~i~A~~VI~AtG~~s~ 233 (563)
..++.+|.||+|.|.-.+
T Consensus 371 ~~~i~~D~vi~a~G~~p~ 388 (457)
T PRK11749 371 EFTLPADLVIKAIGQTPN 388 (457)
T ss_pred eEEEECCEEEECccCCCC
Confidence 467999999999997543
No 309
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=97.58 E-value=7.8e-05 Score=77.55 Aligned_cols=33 Identities=36% Similarity=0.476 Sum_probs=31.4
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEeccC
Q 008503 72 LDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (563)
Q Consensus 72 ~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~ 104 (563)
.||+|||||++|+.+|+.|+++|++|+|+|+.+
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp 35 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRP 35 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccC
Confidence 499999999999999999999999999999875
No 310
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=97.57 E-value=0.0031 Score=66.20 Aligned_cols=63 Identities=16% Similarity=0.135 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCC--cEEEEEEEECCCCcEEEEE--e-CeEEEccCcChh
Q 008503 169 RLNVGLALTAALAGAAVLNHAEVISLIKDEASN--RIIGARIRNNLSGKEFDTY--A-KVVVNAAGPFCD 233 (563)
Q Consensus 169 ~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g--~v~gv~~~d~~~g~~~~i~--A-~~VI~AtG~~s~ 233 (563)
.++.-|.+.++++||+|+++++|++|..+.+++ .++.+.+. .+|....|. . |.|++..|.-.+
T Consensus 208 Sii~Pl~~~L~~~GV~F~~~t~V~di~~~~~~~~~~~~~i~~~--~~g~~~~i~l~~~DlV~vT~GS~t~ 275 (500)
T PF06100_consen 208 SIILPLIRYLKSQGVDFRFNTKVTDIDFDITGDKKTATRIHIE--QDGKEETIDLGPDDLVFVTNGSMTE 275 (500)
T ss_pred HHHHHHHHHHHHCCCEEECCCEEEEEEEEccCCCeeEEEEEEE--cCCCeeEEEeCCCCEEEEECCcccc
Confidence 466778888999999999999999998753312 34455554 345444443 3 889999997554
No 311
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=97.56 E-value=0.0011 Score=69.78 Aligned_cols=53 Identities=21% Similarity=0.312 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEc
Q 008503 168 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNA 227 (563)
Q Consensus 168 ~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~A 227 (563)
.++.+.+.+.+.-.|+.+..++.|.+|..+++ +++.+|.. .| ..++|+.||..
T Consensus 232 GELpQ~FcRl~AV~GG~Y~L~~~i~~i~~~~~-g~~~gV~s----~g--e~v~~k~vI~d 284 (438)
T PF00996_consen 232 GELPQAFCRLSAVYGGTYMLNRPIDEIVVDED-GKVIGVKS----EG--EVVKAKKVIGD 284 (438)
T ss_dssp THHHHHHHHHHHHTT-EEESS--EEEEEEETT-TEEEEEEE----TT--EEEEESEEEEE
T ss_pred ccHHHHHHHHhhhcCcEEEeCCccceeeeecC-CeEEEEec----CC--EEEEcCEEEEC
Confidence 47888998888889999999999999998766 78888742 33 57999999943
No 312
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=97.56 E-value=0.0001 Score=72.17 Aligned_cols=37 Identities=35% Similarity=0.533 Sum_probs=33.7
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEeccC-CCC
Q 008503 71 PLDILVIGGGATGCGVALDAATRGLRVGLVERED-FSS 107 (563)
Q Consensus 71 ~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~-~~~ 107 (563)
.||++|||+|++|+.+|..|++.|.+|+||||.+ +++
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGG 38 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGG 38 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCC
Confidence 3899999999999999999999999999999987 443
No 313
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.56 E-value=0.0012 Score=71.13 Aligned_cols=99 Identities=23% Similarity=0.214 Sum_probs=70.4
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhhhcc
Q 008503 71 PLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQAK 150 (563)
Q Consensus 71 ~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 150 (563)
.-.|+|||+|.+|+-.|..|++.|.+|+++++.+.... .
T Consensus 169 ~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~--------------~--------------------------- 207 (460)
T PRK06292 169 PKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILP--------------L--------------------------- 207 (460)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCc--------------c---------------------------
Confidence 35799999999999999999999999999998752110 0
Q ss_pred cCCcceEEEecCceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccCc
Q 008503 151 DRSLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGP 230 (563)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~ 230 (563)
. +..+...+.+.+++. ++++++++|.++..++ + ..+.+.. .++...++.+|.||+|+|.
T Consensus 208 --------------~-d~~~~~~~~~~l~~~-I~i~~~~~v~~i~~~~--~--~~v~~~~-~~~~~~~i~~D~vi~a~G~ 266 (460)
T PRK06292 208 --------------E-DPEVSKQAQKILSKE-FKIKLGAKVTSVEKSG--D--EKVEELE-KGGKTETIEADYVLVATGR 266 (460)
T ss_pred --------------h-hHHHHHHHHHHHhhc-cEEEcCCEEEEEEEcC--C--ceEEEEE-cCCceEEEEeCEEEEccCC
Confidence 0 112233455556677 9999999999997654 2 1233321 2344457999999999996
Q ss_pred C
Q 008503 231 F 231 (563)
Q Consensus 231 ~ 231 (563)
-
T Consensus 267 ~ 267 (460)
T PRK06292 267 R 267 (460)
T ss_pred c
Confidence 3
No 314
>PRK14694 putative mercuric reductase; Provisional
Probab=97.55 E-value=0.0012 Score=71.26 Aligned_cols=96 Identities=19% Similarity=0.202 Sum_probs=70.1
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhhhccc
Q 008503 72 LDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQAKD 151 (563)
Q Consensus 72 ~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 151 (563)
-.|+|||+|.+|+-.|..|++.|.+|+|+++..+...
T Consensus 179 ~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~l~~------------------------------------------- 215 (468)
T PRK14694 179 ERLLVIGASVVALELAQAFARLGSRVTVLARSRVLSQ------------------------------------------- 215 (468)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEECCCCCCC-------------------------------------------
Confidence 4799999999999999999999999999986432100
Q ss_pred CCcceEEEecCceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccCcC
Q 008503 152 RSLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPF 231 (563)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~~ 231 (563)
.+..+...+.+.+++.|+++++++.|.++..++ +.+ .+.. ++ .++.+|.||+|+|..
T Consensus 216 --------------~~~~~~~~l~~~l~~~GI~v~~~~~v~~i~~~~--~~~---~v~~--~~--~~i~~D~vi~a~G~~ 272 (468)
T PRK14694 216 --------------EDPAVGEAIEAAFRREGIEVLKQTQASEVDYNG--REF---ILET--NA--GTLRAEQLLVATGRT 272 (468)
T ss_pred --------------CCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcC--CEE---EEEE--CC--CEEEeCEEEEccCCC
Confidence 011233355666778999999999999997654 222 2221 22 259999999999976
Q ss_pred hh
Q 008503 232 CD 233 (563)
Q Consensus 232 s~ 233 (563)
.+
T Consensus 273 pn 274 (468)
T PRK14694 273 PN 274 (468)
T ss_pred CC
Confidence 54
No 315
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=97.55 E-value=0.00092 Score=71.20 Aligned_cols=97 Identities=24% Similarity=0.241 Sum_probs=70.4
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhhhccc
Q 008503 72 LDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQAKD 151 (563)
Q Consensus 72 ~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 151 (563)
-.|+|||||.+|+-+|..|++.|.+|+++++.+.... ..
T Consensus 138 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~----------~~------------------------------- 176 (427)
T TIGR03385 138 ENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILN----------KL------------------------------- 176 (427)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCc----------cc-------------------------------
Confidence 5899999999999999999999999999998742100 00
Q ss_pred CCcceEEEecCceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccCcC
Q 008503 152 RSLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPF 231 (563)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~~ 231 (563)
+ +..+...+.+.+++.|+++++++.|.++..+ +.+ +.. .+++ ++.+|.||+|+|..
T Consensus 177 -------------~-~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~---~~~--v~~---~~g~--~i~~D~vi~a~G~~ 232 (427)
T TIGR03385 177 -------------F-DEEMNQIVEEELKKHEINLRLNEEVDSIEGE---ERV--KVF---TSGG--VYQADMVILATGIK 232 (427)
T ss_pred -------------c-CHHHHHHHHHHHHHcCCEEEeCCEEEEEecC---CCE--EEE---cCCC--EEEeCEEEECCCcc
Confidence 0 1122334556667889999999999999754 333 333 2343 68999999999976
Q ss_pred hh
Q 008503 232 CD 233 (563)
Q Consensus 232 s~ 233 (563)
.+
T Consensus 233 p~ 234 (427)
T TIGR03385 233 PN 234 (427)
T ss_pred CC
Confidence 43
No 316
>PLN02568 polyamine oxidase
Probab=97.54 E-value=0.0001 Score=80.29 Aligned_cols=40 Identities=28% Similarity=0.379 Sum_probs=35.1
Q ss_pred CCCccEEEECCchHHHHHHHHHHHCC-----CcEEEEeccCCCCC
Q 008503 69 SNPLDILVIGGGATGCGVALDAATRG-----LRVGLVEREDFSSG 108 (563)
Q Consensus 69 ~~~~DVvIIGaGiaG~~~A~~la~~G-----~~V~llEk~~~~~g 108 (563)
++..||+|||||++|+++|+.|++.| ++|+|+|+++..+|
T Consensus 3 ~~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GG 47 (539)
T PLN02568 3 AKKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGG 47 (539)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCC
Confidence 34589999999999999999999887 89999999875444
No 317
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.54 E-value=0.0012 Score=71.11 Aligned_cols=98 Identities=21% Similarity=0.257 Sum_probs=70.7
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhhhccc
Q 008503 72 LDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQAKD 151 (563)
Q Consensus 72 ~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 151 (563)
-.++|||+|.+|+-.|..|++.|.+|+++++.+.....
T Consensus 178 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~------------------------------------------ 215 (466)
T PRK07845 178 EHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPG------------------------------------------ 215 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCC------------------------------------------
Confidence 47999999999999999999999999999987411000
Q ss_pred CCcceEEEecCceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccCcC
Q 008503 152 RSLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPF 231 (563)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~~ 231 (563)
. +..+...+.+.+.+.|++++++++|.++..++ +.+. +.+ .++ .++.+|.||+|+|.-
T Consensus 216 -------------~-d~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~--~~~~-v~~---~~g--~~l~~D~vl~a~G~~ 273 (466)
T PRK07845 216 -------------E-DADAAEVLEEVFARRGMTVLKRSRAESVERTG--DGVV-VTL---TDG--RTVEGSHALMAVGSV 273 (466)
T ss_pred -------------C-CHHHHHHHHHHHHHCCcEEEcCCEEEEEEEeC--CEEE-EEE---CCC--cEEEecEEEEeecCC
Confidence 0 01122345566678999999999999997654 3332 332 234 368999999999974
Q ss_pred hh
Q 008503 232 CD 233 (563)
Q Consensus 232 s~ 233 (563)
.+
T Consensus 274 pn 275 (466)
T PRK07845 274 PN 275 (466)
T ss_pred cC
Confidence 43
No 318
>PF04324 Fer2_BFD: BFD-like [2Fe-2S] binding domain; InterPro: IPR007419 The two Fe ions are each coordinated by two conserved cysteine residues. This domain occurs alone in small proteins such as bacterioferritin-associated ferredoxin (BFD, P13655 from SWISSPROT). The function of BFD is not known, but it may be a general redox and/or regulatory component involved in the iron storage or mobilisation functions of bacterioferritin in bacteria []. This domain is also found in nitrate reductase proteins in association with the nitrite and sulphite reductase 4Fe-4S domain (IPR006067 from INTERPRO), nitrite/sulphite reductase ferredoxin-like half domain (IPR005117 from INTERPRO) and pyridine nucleotide-disulphide oxidoreductase (IPR001327 from INTERPRO). It is also found in NifU nitrogen fixation proteins, in association with NifU-like N-terminal domain (IPR002871 from INTERPRO) and C-terminal domain (IPR001075 from INTERPRO).; PDB: 2HU9_A.
Probab=97.54 E-value=2.6e-05 Score=57.04 Aligned_cols=49 Identities=14% Similarity=0.188 Sum_probs=26.1
Q ss_pred CCCccHHHHHHHHHhcCCCChhHHHHhhcccccCChHHHhhhHHHHHHHHHHH
Q 008503 475 GYPFLEAEVAYCARNEYCESAVDFVARRCRLAFLDTDAAGRALPRIIEIMATE 527 (563)
Q Consensus 475 c~~v~~~ei~~ai~~e~~~~~~D~l~rRtr~g~g~~~~g~~~~~~v~~~la~~ 527 (563)
|+.||++||+.+|+...+.+..+.|+++|++|.+ |. .|.+.|.++|+++
T Consensus 6 C~~vt~~~I~~ai~~~~g~~t~~~i~~~t~~g~~--Cg--~C~~~v~~ll~e~ 54 (55)
T PF04324_consen 6 CNGVTEGEIRDAIREDNGARTLEEIKRATGAGTG--CG--SCVPEVKDLLAEE 54 (55)
T ss_dssp TTTEEHHHHHHHHHH-H-----HHHHHHHTTSS---TH---------------
T ss_pred cCCcCHHHHHHHHHhhcccchHHHHHHHcCCCCC--CC--Ccccccccccccc
Confidence 9999999999999752356667889999999875 76 4999999999875
No 319
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.53 E-value=0.0011 Score=71.43 Aligned_cols=99 Identities=22% Similarity=0.231 Sum_probs=69.9
Q ss_pred CccEEEECCchHHHHHHHHHHH---CCCcEEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhh
Q 008503 71 PLDILVIGGGATGCGVALDAAT---RGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERK 147 (563)
Q Consensus 71 ~~DVvIIGaGiaG~~~A~~la~---~G~~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~ 147 (563)
.-.|+|||||.+|+-.|..++. .|.+|+|+|+.+.....
T Consensus 187 ~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~~-------------------------------------- 228 (486)
T TIGR01423 187 PRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILRG-------------------------------------- 228 (486)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccccc--------------------------------------
Confidence 3579999999999999976654 49999999987521000
Q ss_pred hcccCCcceEEEecCceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEc
Q 008503 148 QAKDRSLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNA 227 (563)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~A 227 (563)
+ +..+...+.+.+++.|+++++++.|+++..+++ + ...+.+ .++ .++.++.||+|
T Consensus 229 -----------------~-d~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~-~-~~~v~~---~~g--~~i~~D~vl~a 283 (486)
T TIGR01423 229 -----------------F-DSTLRKELTKQLRANGINIMTNENPAKVTLNAD-G-SKHVTF---ESG--KTLDVDVVMMA 283 (486)
T ss_pred -----------------c-CHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCC-c-eEEEEE---cCC--CEEEcCEEEEe
Confidence 0 123334566667789999999999999987543 2 223433 233 36999999999
Q ss_pred cCcCh
Q 008503 228 AGPFC 232 (563)
Q Consensus 228 tG~~s 232 (563)
+|.-.
T Consensus 284 ~G~~P 288 (486)
T TIGR01423 284 IGRVP 288 (486)
T ss_pred eCCCc
Confidence 99643
No 320
>PRK13748 putative mercuric reductase; Provisional
Probab=97.51 E-value=0.0012 Score=73.08 Aligned_cols=96 Identities=17% Similarity=0.192 Sum_probs=70.0
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhhhccc
Q 008503 72 LDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQAKD 151 (563)
Q Consensus 72 ~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 151 (563)
-.|+|||||.+|+-.|..|++.|.+|+||++......
T Consensus 271 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~------------------------------------------- 307 (561)
T PRK13748 271 ERLAVIGSSVVALELAQAFARLGSKVTILARSTLFFR------------------------------------------- 307 (561)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEecCccccc-------------------------------------------
Confidence 4799999999999999999999999999997531100
Q ss_pred CCcceEEEecCceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccCcC
Q 008503 152 RSLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPF 231 (563)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~~ 231 (563)
. +..+...+.+.+++.|+++++++.|.++..++ +.+ .+.. ++ .++.+|.||+|+|..
T Consensus 308 -------------~-d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~--~~~---~v~~--~~--~~i~~D~vi~a~G~~ 364 (561)
T PRK13748 308 -------------E-DPAIGEAVTAAFRAEGIEVLEHTQASQVAHVD--GEF---VLTT--GH--GELRADKLLVATGRA 364 (561)
T ss_pred -------------c-CHHHHHHHHHHHHHCCCEEEcCCEEEEEEecC--CEE---EEEe--cC--CeEEeCEEEEccCCC
Confidence 0 11233355666778999999999999998654 332 2221 12 258999999999975
Q ss_pred hh
Q 008503 232 CD 233 (563)
Q Consensus 232 s~ 233 (563)
.+
T Consensus 365 pn 366 (561)
T PRK13748 365 PN 366 (561)
T ss_pred cC
Confidence 43
No 321
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.50 E-value=0.0013 Score=73.12 Aligned_cols=103 Identities=13% Similarity=-0.001 Sum_probs=68.5
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhhhccc
Q 008503 72 LDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQAKD 151 (563)
Q Consensus 72 ~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 151 (563)
-.|+|||||.+|+-.|..+++.|.+|+|||+.+.... .
T Consensus 313 k~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll~-----------~------------------------------- 350 (659)
T PTZ00153 313 NYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLLP-----------L------------------------------- 350 (659)
T ss_pred CceEEECCCHHHHHHHHHHHhCCCeEEEEeccCcccc-----------c-------------------------------
Confidence 4799999999999999999999999999999752100 0
Q ss_pred CCcceEEEecCceechHHHHHHHHHHH-HHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCC----------cEEEEE
Q 008503 152 RSLKGAVVYYDGQMNDSRLNVGLALTA-ALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSG----------KEFDTY 220 (563)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~l~~~l~~~a-~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g----------~~~~i~ 220 (563)
++ ..+...+.+.. ++.|+++++++.|.++..+++ +....+...+..++ ...++.
T Consensus 351 -------------~d-~eis~~l~~~ll~~~GV~I~~~~~V~~I~~~~~-~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~ 415 (659)
T PTZ00153 351 -------------LD-ADVAKYFERVFLKSKPVRVHLNTLIEYVRAGKG-NQPVIIGHSERQTGESDGPKKNMNDIKETY 415 (659)
T ss_pred -------------CC-HHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCC-ceEEEEEEeccccccccccccccccceEEE
Confidence 01 11122333333 468999999999999986542 22122322211111 113699
Q ss_pred eCeEEEccCcC
Q 008503 221 AKVVVNAAGPF 231 (563)
Q Consensus 221 A~~VI~AtG~~ 231 (563)
+|.||+|+|.-
T Consensus 416 aD~VlvAtGr~ 426 (659)
T PTZ00153 416 VDSCLVATGRK 426 (659)
T ss_pred cCEEEEEECcc
Confidence 99999999964
No 322
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=97.48 E-value=0.00018 Score=76.21 Aligned_cols=106 Identities=19% Similarity=0.171 Sum_probs=71.7
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhhhccc
Q 008503 72 LDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQAKD 151 (563)
Q Consensus 72 ~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 151 (563)
..|.|||||++|+++|..|++.|++|+++|+.+..+| ++.-|+. ++
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GG-------ll~yGIP------------~~--------------- 169 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGG-------LLLYGIP------------DF--------------- 169 (457)
T ss_pred CEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCce-------eEEecCc------------hh---------------
Confidence 6899999999999999999999999999999875433 1111110 00
Q ss_pred CCcceEEEecCceechHHHHHHHHHHHHHCCCEEEcCcEEE-EEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccCc
Q 008503 152 RSLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVI-SLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGP 230 (563)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~-~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~ 230 (563)
-.+..++...++.+++.|++|+.++++- .+..+. .- .++ |+|++|+|.
T Consensus 170 -------------kl~k~i~d~~i~~l~~~Gv~~~~~~~vG~~it~~~--------------L~--~e~--Dav~l~~G~ 218 (457)
T COG0493 170 -------------KLPKDILDRRLELLERSGVEFKLNVRVGRDITLEE--------------LL--KEY--DAVFLATGA 218 (457)
T ss_pred -------------hccchHHHHHHHHHHHcCeEEEEcceECCcCCHHH--------------HH--Hhh--CEEEEeccc
Confidence 1123344456677788999999988774 221110 10 123 999999999
Q ss_pred ChhhhhhhhcCC
Q 008503 231 FCDSVRKLADQN 242 (563)
Q Consensus 231 ~s~~l~~~~g~~ 242 (563)
+........|.+
T Consensus 219 ~~~~~l~i~g~d 230 (457)
T COG0493 219 GKPRPLDIPGED 230 (457)
T ss_pred cCCCCCCCCCcC
Confidence 887766655544
No 323
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.46 E-value=0.0011 Score=68.57 Aligned_cols=99 Identities=24% Similarity=0.312 Sum_probs=70.2
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCc-EEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhhhcc
Q 008503 72 LDILVIGGGATGCGVALDAATRGLR-VGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQAK 150 (563)
Q Consensus 72 ~DVvIIGaGiaG~~~A~~la~~G~~-V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 150 (563)
-.|+|||+|.+|+-+|..|.++|.+ |+|+++.+.... . .
T Consensus 173 ~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~~~~--~-~------------------------------------- 212 (352)
T PRK12770 173 KKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTINEA--P-A------------------------------------- 212 (352)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecchhhC--C-C-------------------------------------
Confidence 3699999999999999999999997 999988642100 0 0
Q ss_pred cCCcceEEEecCceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEEC---------------CCCc
Q 008503 151 DRSLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNN---------------LSGK 215 (563)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~---------------~~g~ 215 (563)
. ..+.+.++++|+++++++.++++..+ +++..|.+.+. .+++
T Consensus 213 ---------------~-----~~~~~~l~~~gi~i~~~~~v~~i~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 269 (352)
T PRK12770 213 ---------------G-----KYEIERLIARGVEFLELVTPVRIIGE---GRVEGVELAKMRLGEPDESGRPRPVPIPGS 269 (352)
T ss_pred ---------------C-----HHHHHHHHHcCCEEeeccCceeeecC---CcEeEEEEEEEEecCcCcccCcCceecCCC
Confidence 0 01233456789999999999998644 35555554321 1344
Q ss_pred EEEEEeCeEEEccCcChh
Q 008503 216 EFDTYAKVVVNAAGPFCD 233 (563)
Q Consensus 216 ~~~i~A~~VI~AtG~~s~ 233 (563)
..++.+|.||+|+|...+
T Consensus 270 ~~~i~~D~vi~a~G~~p~ 287 (352)
T PRK12770 270 EFVLEADTVVFAIGEIPT 287 (352)
T ss_pred eEEEECCEEEECcccCCC
Confidence 567999999999997553
No 324
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=97.46 E-value=0.0007 Score=71.37 Aligned_cols=101 Identities=25% Similarity=0.319 Sum_probs=75.0
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhhhcc
Q 008503 71 PLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQAK 150 (563)
Q Consensus 71 ~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 150 (563)
..+|+|||+|.+|+.+|..|.++|++|+++|+.+...+...
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~--------------------------------------- 176 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLL--------------------------------------- 176 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhh---------------------------------------
Confidence 46999999999999999999999999999999864322100
Q ss_pred cCCcceEEEecCceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEE--EEEEECCCCcEEEEEeCeEEEcc
Q 008503 151 DRSLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIG--ARIRNNLSGKEFDTYAKVVVNAA 228 (563)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~g--v~~~d~~~g~~~~i~A~~VI~At 228 (563)
. ..+...+.+...+.|+++++++.+..+....+ .+.. +.. ..+ ..+.+|.+++++
T Consensus 177 ---------------~-~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~~--~~~~~~~~~---~~~--~~~~~d~~~~~~ 233 (415)
T COG0446 177 ---------------D-PEVAEELAELLEKYGVELLLGTKVVGVEGKGN--TLVVERVVG---IDG--EEIKADLVIIGP 233 (415)
T ss_pred ---------------h-HHHHHHHHHHHHHCCcEEEeCCceEEEEcccC--cceeeEEEE---eCC--cEEEeeEEEEee
Confidence 0 22334566777889999999999999987652 3322 121 222 479999999999
Q ss_pred CcChh
Q 008503 229 GPFCD 233 (563)
Q Consensus 229 G~~s~ 233 (563)
|...+
T Consensus 234 g~~p~ 238 (415)
T COG0446 234 GERPN 238 (415)
T ss_pred ccccc
Confidence 98663
No 325
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=97.44 E-value=0.0012 Score=70.53 Aligned_cols=93 Identities=22% Similarity=0.215 Sum_probs=68.5
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhhhccc
Q 008503 72 LDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQAKD 151 (563)
Q Consensus 72 ~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 151 (563)
-.|+|||||.+|+-.|..|++.|.+|+|+++.+.....
T Consensus 149 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~~------------------------------------------ 186 (438)
T PRK13512 149 DKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINKL------------------------------------------ 186 (438)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccchh------------------------------------------
Confidence 47999999999999999999999999999987421000
Q ss_pred CCcceEEEecCceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccCcC
Q 008503 152 RSLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPF 231 (563)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~~ 231 (563)
+ +..+...+.+.+++.|+++++++.|+++.. . .|.+ .+++ .+.+|.||.|+|.-
T Consensus 187 -------------~-d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~----~---~v~~---~~g~--~~~~D~vl~a~G~~ 240 (438)
T PRK13512 187 -------------M-DADMNQPILDELDKREIPYRLNEEIDAING----N---EVTF---KSGK--VEHYDMIIEGVGTH 240 (438)
T ss_pred -------------c-CHHHHHHHHHHHHhcCCEEEECCeEEEEeC----C---EEEE---CCCC--EEEeCEEEECcCCC
Confidence 0 112333556667789999999999999852 1 2333 2343 68899999999964
Q ss_pred h
Q 008503 232 C 232 (563)
Q Consensus 232 s 232 (563)
.
T Consensus 241 p 241 (438)
T PRK13512 241 P 241 (438)
T ss_pred c
Confidence 4
No 326
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.43 E-value=0.0018 Score=70.28 Aligned_cols=96 Identities=19% Similarity=0.153 Sum_probs=69.8
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhhhccc
Q 008503 72 LDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQAKD 151 (563)
Q Consensus 72 ~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 151 (563)
-+|+|||||.+|+-.|..|++.|.+|+|+++..+...
T Consensus 183 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l~~------------------------------------------- 219 (499)
T PTZ00052 183 GKTLIVGASYIGLETAGFLNELGFDVTVAVRSIPLRG------------------------------------------- 219 (499)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCccccc-------------------------------------------
Confidence 4799999999999999999999999999986421100
Q ss_pred CCcceEEEecCceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccCcC
Q 008503 152 RSLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPF 231 (563)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~~ 231 (563)
+ +..+...+.+.+++.|++++.++.+..+...+ +.+ .+.+ .+++ ++.+|.||+|+|.-
T Consensus 220 -------------~-d~~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~--~~~-~v~~---~~g~--~i~~D~vl~a~G~~ 277 (499)
T PTZ00052 220 -------------F-DRQCSEKVVEYMKEQGTLFLEGVVPINIEKMD--DKI-KVLF---SDGT--TELFDTVLYATGRK 277 (499)
T ss_pred -------------C-CHHHHHHHHHHHHHcCCEEEcCCeEEEEEEcC--CeE-EEEE---CCCC--EEEcCEEEEeeCCC
Confidence 0 11223355666778999999999999987654 232 2433 2343 57899999999974
Q ss_pred h
Q 008503 232 C 232 (563)
Q Consensus 232 s 232 (563)
.
T Consensus 278 p 278 (499)
T PTZ00052 278 P 278 (499)
T ss_pred C
Confidence 4
No 327
>PLN02676 polyamine oxidase
Probab=97.43 E-value=0.00017 Score=77.79 Aligned_cols=39 Identities=21% Similarity=0.444 Sum_probs=34.7
Q ss_pred CCccEEEECCchHHHHHHHHHHHCCC-cEEEEeccCCCCC
Q 008503 70 NPLDILVIGGGATGCGVALDAATRGL-RVGLVEREDFSSG 108 (563)
Q Consensus 70 ~~~DVvIIGaGiaG~~~A~~la~~G~-~V~llEk~~~~~g 108 (563)
..+||+|||||++|+++|+.|++.|+ +|+|+|+++..+|
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG 64 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGG 64 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCC
Confidence 45799999999999999999999998 5999999975444
No 328
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=97.43 E-value=0.0003 Score=64.65 Aligned_cols=35 Identities=26% Similarity=0.503 Sum_probs=31.4
Q ss_pred CCccEEEECCchHHHHHHHHHHHC--CCcEEEEeccC
Q 008503 70 NPLDILVIGGGATGCGVALDAATR--GLRVGLVERED 104 (563)
Q Consensus 70 ~~~DVvIIGaGiaG~~~A~~la~~--G~~V~llEk~~ 104 (563)
.+.||+|||+|-+|+++||..+++ .++|.+||..-
T Consensus 75 AesDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SV 111 (328)
T KOG2960|consen 75 AESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSV 111 (328)
T ss_pred hccceEEECCCccccceeeeeeccCCCceEEEEEeee
Confidence 457999999999999999999965 78999999984
No 329
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=97.43 E-value=0.00014 Score=78.44 Aligned_cols=36 Identities=36% Similarity=0.613 Sum_probs=31.8
Q ss_pred cEEEECCchHHHHHHHHHHHC------CCcEEEEeccCCCCC
Q 008503 73 DILVIGGGATGCGVALDAATR------GLRVGLVEREDFSSG 108 (563)
Q Consensus 73 DVvIIGaGiaG~~~A~~la~~------G~~V~llEk~~~~~g 108 (563)
+|+|||||++|+++|+.|++. |.+|+|+|+.+-.+|
T Consensus 3 ~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GG 44 (463)
T PRK12416 3 TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGG 44 (463)
T ss_pred eEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccc
Confidence 699999999999999999986 489999999975444
No 330
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.42 E-value=0.0013 Score=75.07 Aligned_cols=101 Identities=21% Similarity=0.255 Sum_probs=73.1
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCc-EEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhhhcc
Q 008503 72 LDILVIGGGATGCGVALDAATRGLR-VGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQAK 150 (563)
Q Consensus 72 ~DVvIIGaGiaG~~~A~~la~~G~~-V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 150 (563)
-.|+|||||.+|+-+|..|.+.|.+ |+|+++.+... +..
T Consensus 571 k~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~~~---------~~~------------------------------- 610 (752)
T PRK12778 571 KKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSEEE---------MPA------------------------------- 610 (752)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCccc---------CCC-------------------------------
Confidence 4799999999999999999999997 99999864200 000
Q ss_pred cCCcceEEEecCceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEEC---------------CCCc
Q 008503 151 DRSLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNN---------------LSGK 215 (563)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~---------------~~g~ 215 (563)
.. ...+.+.+.|+++++++.+.++..+++ ++|.+|.+... .++.
T Consensus 611 ---------------~~-----~e~~~~~~~GV~i~~~~~~~~i~~~~~-g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~ 669 (752)
T PRK12778 611 ---------------RL-----EEVKHAKEEGIEFLTLHNPIEYLADEK-GWVKQVVLQKMELGEPDASGRRRPVAIPGS 669 (752)
T ss_pred ---------------CH-----HHHHHHHHcCCEEEecCcceEEEECCC-CEEEEEEEEEEEecCcCCCCCCCceecCCC
Confidence 00 112345678999999999999987654 68888876411 1234
Q ss_pred EEEEEeCeEEEccCcChh
Q 008503 216 EFDTYAKVVVNAAGPFCD 233 (563)
Q Consensus 216 ~~~i~A~~VI~AtG~~s~ 233 (563)
...+.+|.||.|.|--.+
T Consensus 670 ~~~i~~D~Vi~A~G~~p~ 687 (752)
T PRK12778 670 TFTVDVDLVIVSVGVSPN 687 (752)
T ss_pred eEEEECCEEEECcCCCCC
Confidence 457999999999997544
No 331
>PRK07846 mycothione reductase; Reviewed
Probab=97.40 E-value=0.0019 Score=69.22 Aligned_cols=98 Identities=20% Similarity=0.267 Sum_probs=67.8
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhhhcc
Q 008503 71 PLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQAK 150 (563)
Q Consensus 71 ~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 150 (563)
.-+|+|||||.+|+-+|..|++.|.+|+|+++.+.... .
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~-----------~------------------------------ 204 (451)
T PRK07846 166 PESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLR-----------H------------------------------ 204 (451)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcccc-----------c------------------------------
Confidence 35899999999999999999999999999999752100 0
Q ss_pred cCCcceEEEecCceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccCc
Q 008503 151 DRSLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGP 230 (563)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~ 230 (563)
++ ..+...+. ...+.|++++++++|+++..++ +.+ .+.. .++ .++.+|.||+|+|.
T Consensus 205 --------------~d-~~~~~~l~-~l~~~~v~i~~~~~v~~i~~~~--~~v-~v~~---~~g--~~i~~D~vl~a~G~ 260 (451)
T PRK07846 205 --------------LD-DDISERFT-ELASKRWDVRLGRNVVGVSQDG--SGV-TLRL---DDG--STVEADVLLVATGR 260 (451)
T ss_pred --------------cC-HHHHHHHH-HHHhcCeEEEeCCEEEEEEEcC--CEE-EEEE---CCC--cEeecCEEEEEECC
Confidence 00 11111222 2335689999999999997654 332 2322 233 36999999999997
Q ss_pred Chh
Q 008503 231 FCD 233 (563)
Q Consensus 231 ~s~ 233 (563)
..+
T Consensus 261 ~pn 263 (451)
T PRK07846 261 VPN 263 (451)
T ss_pred ccC
Confidence 543
No 332
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.40 E-value=0.0012 Score=71.24 Aligned_cols=109 Identities=19% Similarity=0.184 Sum_probs=71.3
Q ss_pred ccEEEECCchHHHHHHHHHHHCCC-cEEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhhhcc
Q 008503 72 LDILVIGGGATGCGVALDAATRGL-RVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQAK 150 (563)
Q Consensus 72 ~DVvIIGaGiaG~~~A~~la~~G~-~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 150 (563)
-.|+|||||.+|+-+|..+.+.|. +|++++....... ....
T Consensus 282 k~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~~~~~--~~~~------------------------------------ 323 (471)
T PRK12810 282 KHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMPMPPS--RRNK------------------------------------ 323 (471)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCeEEEccccCCCcc--cccc------------------------------------
Confidence 469999999999999999999987 6887665532110 0000
Q ss_pred cCCcceEEEecCceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEEC---------CCCcEEEEEe
Q 008503 151 DRSLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNN---------LSGKEFDTYA 221 (563)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~---------~~g~~~~i~A 221 (563)
....+........+.+.+.|+++++++.+++|..++ ++|.+|.+... .++...++.+
T Consensus 324 ------------~~~~~~~~~~~~~~~~~~~GV~i~~~~~~~~i~~~~--g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~ 389 (471)
T PRK12810 324 ------------NNPWPYWPMKLEVSNAHEEGVEREFNVQTKEFEGEN--GKVTGVKVVRTELGEGDFEPVEGSEFVLPA 389 (471)
T ss_pred ------------ccCCcccchHHHHHHHHHcCCeEEeccCceEEEccC--CEEEEEEEEEEEecCCCccccCCceEEEEC
Confidence 000000000012445677899999999999997543 68888876421 1244468999
Q ss_pred CeEEEccCcCh
Q 008503 222 KVVVNAAGPFC 232 (563)
Q Consensus 222 ~~VI~AtG~~s 232 (563)
|.||+|+|...
T Consensus 390 D~VI~A~G~~p 400 (471)
T PRK12810 390 DLVLLAMGFTG 400 (471)
T ss_pred CEEEECcCcCC
Confidence 99999999644
No 333
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=97.40 E-value=0.0014 Score=76.03 Aligned_cols=102 Identities=22% Similarity=0.188 Sum_probs=72.1
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhhhccc
Q 008503 72 LDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQAKD 151 (563)
Q Consensus 72 ~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 151 (563)
-+|+|||||.+|+-+|..+.+.|.+|+++.+.+.. . + +
T Consensus 448 k~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~~~-~--------m-p-------------------------------- 485 (944)
T PRK12779 448 KEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRTKS-E--------M-P-------------------------------- 485 (944)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEEecCcc-c--------c-c--------------------------------
Confidence 47999999999999999999999999999876310 0 0 0
Q ss_pred CCcceEEEecCceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEE--------------CCCCcEE
Q 008503 152 RSLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRN--------------NLSGKEF 217 (563)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d--------------~~~g~~~ 217 (563)
..+ ...+.+.+.|+++++++.++++..++++++|.++.+.. ..+|+..
T Consensus 486 -------------a~~-----~e~~~a~eeGV~~~~~~~p~~i~~d~~~~~V~~v~~~~~~l~~~d~~Gr~~~~~~G~e~ 547 (944)
T PRK12779 486 -------------ARV-----EELHHALEEGINLAVLRAPREFIGDDHTHFVTHALLDVNELGEPDKSGRRSPKPTGEIE 547 (944)
T ss_pred -------------ccH-----HHHHHHHHCCCEEEeCcceEEEEecCCCCEEEEEEEEEEEeccccCcCceeeecCCceE
Confidence 001 11223456799999999999998664324677765421 0134456
Q ss_pred EEEeCeEEEccCcChh
Q 008503 218 DTYAKVVVNAAGPFCD 233 (563)
Q Consensus 218 ~i~A~~VI~AtG~~s~ 233 (563)
.+.||.||+|.|--.+
T Consensus 548 ~i~aD~VI~AiG~~p~ 563 (944)
T PRK12779 548 RVPVDLVIMALGNTAN 563 (944)
T ss_pred EEECCEEEEcCCcCCC
Confidence 7999999999996544
No 334
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=97.39 E-value=0.00017 Score=75.65 Aligned_cols=36 Identities=36% Similarity=0.595 Sum_probs=32.6
Q ss_pred cEEEECCchHHHHHHHHHHHCC--CcEEEEeccCCCCC
Q 008503 73 DILVIGGGATGCGVALDAATRG--LRVGLVEREDFSSG 108 (563)
Q Consensus 73 DVvIIGaGiaG~~~A~~la~~G--~~V~llEk~~~~~g 108 (563)
.|+|||||++|+++||.|++++ ..|+|+|+++..+|
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG 39 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGG 39 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCc
Confidence 4899999999999999999999 99999999865444
No 335
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=97.38 E-value=0.0057 Score=62.18 Aligned_cols=167 Identities=18% Similarity=0.260 Sum_probs=85.2
Q ss_pred CCCccEEEECCchHHHHHHHHHHHC----CCcEEEEeccCCCCC--------CccCCCCccccchhhHHHH--h---hcc
Q 008503 69 SNPLDILVIGGGATGCGVALDAATR----GLRVGLVEREDFSSG--------TSSRSTKLIHGGVRYLEKA--V---FNL 131 (563)
Q Consensus 69 ~~~~DVvIIGaGiaG~~~A~~la~~----G~~V~llEk~~~~~g--------~s~~~~~~~~~g~~~~~~~--~---~~~ 131 (563)
+..|||||||||++|.+.|..|... -+||.|+|.++...- -+.+-+.+-+..+..++.. + +..
T Consensus 34 ~~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s~kl~~~~~~~~f~Nrvss~s~~s~~~fk~~~awd~i~~~ 113 (481)
T KOG3855|consen 34 TAKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDSPKLGDFKPSETFSNRVSSISPASISLFKSIGAWDHIFHD 113 (481)
T ss_pred cccCCEEEECCchHHHHHHHHhccCCccchheeeEEecccCccccccccCccccceeecCCcchHHHHHhcCHHHHhhhh
Confidence 4579999999999999999998754 579999999842111 1111122223333333221 0 000
Q ss_pred CcccH--HHHHHHHHHhhhcccCCcceEEEecCceechHHHHHHHHH---HHHHCCCEEEcCcEEEEEEEc------CCC
Q 008503 132 DYGQL--KLVFHALEERKQAKDRSLKGAVVYYDGQMNDSRLNVGLAL---TAALAGAAVLNHAEVISLIKD------EAS 200 (563)
Q Consensus 132 ~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~---~a~~~G~~i~~~~~v~~l~~~------~~~ 200 (563)
-+..+ .++++.+.+..+....+..+ ..-.+.+...-+..+|.. ..+...+++.+.+.+..+... ++
T Consensus 114 R~~~~~~~~v~Ds~s~a~I~~~~d~~~--~d~a~iien~nIq~sL~~s~~~s~~~nv~vi~~~k~~~~~~~~~l~~~~n- 190 (481)
T KOG3855|consen 114 RYQKFSRMLVWDSCSAALILFDHDNVG--IDMAFIIENDNIQCSLYNSQLDSESDNVTVINMAKVIDCTIPEYLIKNDN- 190 (481)
T ss_pred ccccccceeeecccchhhhhhcccccc--ccceeeeehhHHHHHHHHHHHhhhcCceeeecccceeeeccccccCCCCC-
Confidence 00000 01111111111110000000 000122222223334432 234568999999998887652 22
Q ss_pred CcEEEEEEEECCCCcEEEEEeCeEEEccCcChhhhhhhhcCCCC
Q 008503 201 NRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQ 244 (563)
Q Consensus 201 g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~~s~~l~~~~g~~~~ 244 (563)
+-..-+.. .+| ..+..|.+|-|.|..+. +++..+.+.+
T Consensus 191 ~~~~~i~l---~dg--~~~~~~LLigAdg~Ns~-vR~~snid~~ 228 (481)
T KOG3855|consen 191 GMWFHITL---TDG--INFATDLLIGADGFNSV-VRKASNIDVA 228 (481)
T ss_pred cceEEEEe---ccC--ceeeeceeeccccccch-hhhhcCCCcc
Confidence 34444443 234 47899999999999884 5566665543
No 336
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=97.36 E-value=0.00019 Score=75.06 Aligned_cols=33 Identities=36% Similarity=0.465 Sum_probs=31.1
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEeccC
Q 008503 72 LDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (563)
Q Consensus 72 ~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~ 104 (563)
.||+|||||.+|+.+|+.|+++|++|+|+|+.+
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp 33 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRP 33 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEeccc
Confidence 389999999999999999999999999999874
No 337
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.35 E-value=0.001 Score=61.88 Aligned_cols=121 Identities=17% Similarity=0.202 Sum_probs=77.4
Q ss_pred CCccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhhhc
Q 008503 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQA 149 (563)
Q Consensus 70 ~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 149 (563)
..-.|+|||.|+++-.+|+++++.-++-+|+|-.-.. +. -.+|. .... .+.+
T Consensus 7 h~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~-~i-------~pGGQ-LtTT-------T~ve------------ 58 (322)
T KOG0404|consen 7 HNENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMAN-GI-------APGGQ-LTTT-------TDVE------------ 58 (322)
T ss_pred eeeeEEEEccCchHHHHHHHHhhcccCceEEeeeecc-Cc-------CCCce-eeee-------eccc------------
Confidence 3457999999999999999999999999999975211 10 00110 0000 0000
Q ss_pred ccCCcceEEEecCceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccC
Q 008503 150 KDRSLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAG 229 (563)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG 229 (563)
+.++ +.+|. ....++..|.+.+.+.|.+++.+ .|.++.... +...+. |+ ...+.|+.||+|||
T Consensus 59 NfPG------FPdgi-~G~~l~d~mrkqs~r~Gt~i~tE-tVskv~~ss---kpF~l~-----td-~~~v~~~avI~atG 121 (322)
T KOG0404|consen 59 NFPG------FPDGI-TGPELMDKMRKQSERFGTEIITE-TVSKVDLSS---KPFKLW-----TD-ARPVTADAVILATG 121 (322)
T ss_pred cCCC------CCccc-ccHHHHHHHHHHHHhhcceeeee-ehhhccccC---CCeEEE-----ec-CCceeeeeEEEecc
Confidence 0111 22332 34577888999999999999886 577776653 222221 22 25799999999999
Q ss_pred cChhhh
Q 008503 230 PFCDSV 235 (563)
Q Consensus 230 ~~s~~l 235 (563)
+-+.++
T Consensus 122 AsAkRl 127 (322)
T KOG0404|consen 122 ASAKRL 127 (322)
T ss_pred cceeee
Confidence 966543
No 338
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=97.34 E-value=0.0021 Score=69.12 Aligned_cols=100 Identities=26% Similarity=0.290 Sum_probs=72.0
Q ss_pred ccEEEECCchHHHHHHHHHHHCCC-cEEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhhhcc
Q 008503 72 LDILVIGGGATGCGVALDAATRGL-RVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQAK 150 (563)
Q Consensus 72 ~DVvIIGaGiaG~~~A~~la~~G~-~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 150 (563)
-.|+|||+|.+|+-+|..+.+.|. +|+||++.+...- +.
T Consensus 283 k~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~~~~----------~~------------------------------ 322 (467)
T TIGR01318 283 KRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRDEANM----------PG------------------------------ 322 (467)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecCcccC----------CC------------------------------
Confidence 479999999999999999999996 6999998642100 00
Q ss_pred cCCcceEEEecCceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEEC---------------CCCc
Q 008503 151 DRSLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNN---------------LSGK 215 (563)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~---------------~~g~ 215 (563)
.+ ...+.+.+.|+++++++.++++..+++ +++.+|.+... .+++
T Consensus 323 ---------------~~-----~e~~~~~~~GV~~~~~~~~~~i~~~~~-g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~ 381 (467)
T TIGR01318 323 ---------------SR-----REVANAREEGVEFLFNVQPVYIECDED-GRVTGVGLVRTALGEPDADGRRRPVPVAGS 381 (467)
T ss_pred ---------------CH-----HHHHHHHhcCCEEEecCCcEEEEECCC-CeEEEEEEEEEEecccCCCCCccceecCCc
Confidence 00 112345678999999999999976544 67888766321 0233
Q ss_pred EEEEEeCeEEEccCcCh
Q 008503 216 EFDTYAKVVVNAAGPFC 232 (563)
Q Consensus 216 ~~~i~A~~VI~AtG~~s 232 (563)
...+.+|.||+|+|.-.
T Consensus 382 ~~~i~~D~Vi~a~G~~p 398 (467)
T TIGR01318 382 EFVLPADVVIMAFGFQP 398 (467)
T ss_pred eEEEECCEEEECCcCCC
Confidence 45799999999999644
No 339
>PTZ00188 adrenodoxin reductase; Provisional
Probab=97.32 E-value=0.0005 Score=72.81 Aligned_cols=38 Identities=18% Similarity=0.331 Sum_probs=32.5
Q ss_pred CccEEEECCchHHHHHHHHHH-HCCCcEEEEeccCCCCC
Q 008503 71 PLDILVIGGGATGCGVALDAA-TRGLRVGLVEREDFSSG 108 (563)
Q Consensus 71 ~~DVvIIGaGiaG~~~A~~la-~~G~~V~llEk~~~~~g 108 (563)
...|+|||||++|+.+|..|+ +.|++|.|+|+.+..+|
T Consensus 39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgG 77 (506)
T PTZ00188 39 PFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYG 77 (506)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCcc
Confidence 357999999999999999765 67999999999975544
No 340
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=97.28 E-value=0.003 Score=67.12 Aligned_cols=97 Identities=21% Similarity=0.246 Sum_probs=68.7
Q ss_pred cEEEECCchHHHHHHHHHHH--------------CCCcEEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHHH
Q 008503 73 DILVIGGGATGCGVALDAAT--------------RGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKL 138 (563)
Q Consensus 73 DVvIIGaGiaG~~~A~~la~--------------~G~~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 138 (563)
.|+|||||.+|+-.|.+|++ .+.+|+||++.+.....
T Consensus 175 ~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~----------------------------- 225 (424)
T PTZ00318 175 HFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGS----------------------------- 225 (424)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCccccc-----------------------------
Confidence 79999999999999999886 47899999987411000
Q ss_pred HHHHHHHhhhcccCCcceEEEecCceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEE
Q 008503 139 VFHALEERKQAKDRSLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFD 218 (563)
Q Consensus 139 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~ 218 (563)
+ +..+...+.+.+++.|++++++++|+++..+ . |.+ .+|+ +
T Consensus 226 --------------------------~-~~~~~~~~~~~L~~~gV~v~~~~~v~~v~~~----~---v~~---~~g~--~ 266 (424)
T PTZ00318 226 --------------------------F-DQALRKYGQRRLRRLGVDIRTKTAVKEVLDK----E---VVL---KDGE--V 266 (424)
T ss_pred --------------------------C-CHHHHHHHHHHHHHCCCEEEeCCeEEEEeCC----E---EEE---CCCC--E
Confidence 0 1123335566677899999999999988532 2 333 3443 7
Q ss_pred EEeCeEEEccCcChhhhhh
Q 008503 219 TYAKVVVNAAGPFCDSVRK 237 (563)
Q Consensus 219 i~A~~VI~AtG~~s~~l~~ 237 (563)
+.++.||.|+|.-...+..
T Consensus 267 i~~d~vi~~~G~~~~~~~~ 285 (424)
T PTZ00318 267 IPTGLVVWSTGVGPGPLTK 285 (424)
T ss_pred EEccEEEEccCCCCcchhh
Confidence 8999999999965544433
No 341
>PLN02546 glutathione reductase
Probab=97.28 E-value=0.0029 Score=69.30 Aligned_cols=100 Identities=19% Similarity=0.130 Sum_probs=69.8
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhhhcc
Q 008503 71 PLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQAK 150 (563)
Q Consensus 71 ~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 150 (563)
.-+|+|||||.+|+-.|..+++.|.+|+|+++.+.... .
T Consensus 252 ~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~-----------~------------------------------ 290 (558)
T PLN02546 252 PEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLR-----------G------------------------------ 290 (558)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEecccccc-----------c------------------------------
Confidence 35899999999999999999999999999998741100 0
Q ss_pred cCCcceEEEecCceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccCc
Q 008503 151 DRSLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGP 230 (563)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~ 230 (563)
+ +..+...+.+.+++.|+++++++.+.++..+++ +.+ .+ .. . ......+|.||+|+|.
T Consensus 291 --------------~-d~~~~~~l~~~L~~~GV~i~~~~~v~~i~~~~~-g~v-~v--~~-~--~g~~~~~D~Viva~G~ 348 (558)
T PLN02546 291 --------------F-DEEVRDFVAEQMSLRGIEFHTEESPQAIIKSAD-GSL-SL--KT-N--KGTVEGFSHVMFATGR 348 (558)
T ss_pred --------------c-CHHHHHHHHHHHHHCCcEEEeCCEEEEEEEcCC-CEE-EE--EE-C--CeEEEecCEEEEeecc
Confidence 0 112223455667789999999999999976543 333 23 22 1 2223447999999997
Q ss_pred Chh
Q 008503 231 FCD 233 (563)
Q Consensus 231 ~s~ 233 (563)
-.+
T Consensus 349 ~Pn 351 (558)
T PLN02546 349 KPN 351 (558)
T ss_pred ccC
Confidence 543
No 342
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=97.27 E-value=0.0007 Score=70.15 Aligned_cols=106 Identities=22% Similarity=0.344 Sum_probs=72.3
Q ss_pred ccEEEECCchHHHHHHHHHHHCC--CcEEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhhhc
Q 008503 72 LDILVIGGGATGCGVALDAATRG--LRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQA 149 (563)
Q Consensus 72 ~DVvIIGaGiaG~~~A~~la~~G--~~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 149 (563)
..|||||||.+|+.+|..|.+.- .+|+|||+++.-.-+ .++ .
T Consensus 4 ~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~-----plL----------------------~--------- 47 (405)
T COG1252 4 KRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFT-----PLL----------------------Y--------- 47 (405)
T ss_pred ceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccc-----hhh----------------------h---------
Confidence 46999999999999999999974 999999999632110 000 0
Q ss_pred ccCCcceEEEecCceechHHHHHHHHHHHHHCC-CEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEcc
Q 008503 150 KDRSLKGAVVYYDGQMNDSRLNVGLALTAALAG-AAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAA 228 (563)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~G-~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~At 228 (563)
....|.+++......+.+.+...+ +++.. .+|++|..+. .+| ++. + ...+..|.+|+|.
T Consensus 48 ---------eva~g~l~~~~i~~p~~~~~~~~~~v~~~~-~~V~~ID~~~--k~V---~~~---~--~~~i~YD~LVval 107 (405)
T COG1252 48 ---------EVATGTLSESEIAIPLRALLRKSGNVQFVQ-GEVTDIDRDA--KKV---TLA---D--LGEISYDYLVVAL 107 (405)
T ss_pred ---------hhhcCCCChhheeccHHHHhcccCceEEEE-EEEEEEcccC--CEE---EeC---C--CccccccEEEEec
Confidence 112344455555556666666555 78776 4899998875 233 332 2 2479999999999
Q ss_pred CcChh
Q 008503 229 GPFCD 233 (563)
Q Consensus 229 G~~s~ 233 (563)
|.-..
T Consensus 108 Gs~~~ 112 (405)
T COG1252 108 GSETN 112 (405)
T ss_pred CCcCC
Confidence 98553
No 343
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.24 E-value=0.0039 Score=65.00 Aligned_cols=39 Identities=23% Similarity=0.411 Sum_probs=32.2
Q ss_pred ccEEEECCchHHHHHHHHHHHC--C-CcEEEEeccC-CCCCCc
Q 008503 72 LDILVIGGGATGCGVALDAATR--G-LRVGLVERED-FSSGTS 110 (563)
Q Consensus 72 ~DVvIIGaGiaG~~~A~~la~~--G-~~V~llEk~~-~~~g~s 110 (563)
++|+|||+|.+|+++|.+|.+. . .+|.|+|+.+ ++.|..
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~Gia 44 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIA 44 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCcc
Confidence 6899999999999999999886 1 2399999984 666644
No 344
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.24 E-value=0.0073 Score=62.07 Aligned_cols=142 Identities=20% Similarity=0.259 Sum_probs=70.4
Q ss_pred CCCccEEEECCchHHHHHHHHHHHCCC--cEEEEeccC--CCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHH
Q 008503 69 SNPLDILVIGGGATGCGVALDAATRGL--RVGLVERED--FSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALE 144 (563)
Q Consensus 69 ~~~~DVvIIGaGiaG~~~A~~la~~G~--~V~llEk~~--~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~ 144 (563)
.....|+|||||.+++-++..|.+++- +|.++=|.. .....|.-...+..+ .|.. .+..++. ..+..+.
T Consensus 188 ~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~d~s~f~ne~f~P--~~v~-~f~~l~~----~~R~~~l 260 (341)
T PF13434_consen 188 LAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPMDDSPFVNEIFSP--EYVD-YFYSLPD----EERRELL 260 (341)
T ss_dssp ---EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB----CCHHGGGSH--HHHH-HHHTS-H----HHHHHHH
T ss_pred cCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCCccccchhhhcCc--hhhh-hhhcCCH----HHHHHHH
Confidence 345789999999999999999999875 899998874 112212111111111 1111 0111111 1111111
Q ss_pred HhhhcccCCcceEEEecCceechHHHHHHHHH-----HH-HHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEE
Q 008503 145 ERKQAKDRSLKGAVVYYDGQMNDSRLNVGLAL-----TA-ALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFD 218 (563)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-----~a-~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~ 218 (563)
+.... ...+.+++..+ ..+.+ .. .+.-++++.+++|+++..+++ +++ -+.+++..+++...
T Consensus 261 ~~~~~----------~ny~~i~~~~l-~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~-~~~-~l~~~~~~~~~~~~ 327 (341)
T PF13434_consen 261 REQRH----------TNYGGIDPDLL-EAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGD-GGV-RLTLRHRQTGEEET 327 (341)
T ss_dssp HHTGG----------GTSSEB-HHHH-HHHHHHHHHHHHHT---SEEETTEEEEEEEEES--SSE-EEEEEETTT--EEE
T ss_pred HHhHh----------hcCCCCCHHHH-HHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCC-CEE-EEEEEECCCCCeEE
Confidence 11100 01123444322 22222 12 123489999999999998864 444 57777767777788
Q ss_pred EEeCeEEEccCc
Q 008503 219 TYAKVVVNAAGP 230 (563)
Q Consensus 219 i~A~~VI~AtG~ 230 (563)
+.+|.||+|||-
T Consensus 328 ~~~D~VilATGy 339 (341)
T PF13434_consen 328 LEVDAVILATGY 339 (341)
T ss_dssp EEESEEEE---E
T ss_pred EecCEEEEcCCc
Confidence 999999999994
No 345
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.23 E-value=0.0042 Score=66.64 Aligned_cols=97 Identities=19% Similarity=0.225 Sum_probs=67.1
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhhhcc
Q 008503 71 PLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQAK 150 (563)
Q Consensus 71 ~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 150 (563)
.-.++|||||.+|+-.|..|++.|.+|++|++.+.... .
T Consensus 169 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~--------------~--------------------------- 207 (452)
T TIGR03452 169 PESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLR--------------H--------------------------- 207 (452)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcccc--------------c---------------------------
Confidence 35899999999999999999999999999998742100 0
Q ss_pred cCCcceEEEecCceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccCc
Q 008503 151 DRSLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGP 230 (563)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~ 230 (563)
++ ..+...+.+ ..+.|+++++++.|+++..++ +.+ .+.. .+++ ++.+|.||+|+|.
T Consensus 208 --------------~d-~~~~~~l~~-~~~~gI~i~~~~~V~~i~~~~--~~v-~v~~---~~g~--~i~~D~vl~a~G~ 263 (452)
T TIGR03452 208 --------------LD-EDISDRFTE-IAKKKWDIRLGRNVTAVEQDG--DGV-TLTL---DDGS--TVTADVLLVATGR 263 (452)
T ss_pred --------------cC-HHHHHHHHH-HHhcCCEEEeCCEEEEEEEcC--CeE-EEEE---cCCC--EEEcCEEEEeecc
Confidence 00 111112222 234689999999999998664 233 2332 2343 6999999999996
Q ss_pred Ch
Q 008503 231 FC 232 (563)
Q Consensus 231 ~s 232 (563)
-.
T Consensus 264 ~p 265 (452)
T TIGR03452 264 VP 265 (452)
T ss_pred Cc
Confidence 43
No 346
>PLN02529 lysine-specific histone demethylase 1
Probab=97.22 E-value=0.00039 Score=77.80 Aligned_cols=39 Identities=21% Similarity=0.415 Sum_probs=34.7
Q ss_pred CCccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCC
Q 008503 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSG 108 (563)
Q Consensus 70 ~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g 108 (563)
...||+|||||++|+++|+.|+++|++|+|+|+.+..+|
T Consensus 159 ~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG 197 (738)
T PLN02529 159 TEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGG 197 (738)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcC
Confidence 357999999999999999999999999999999874443
No 347
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=97.22 E-value=0.00039 Score=78.25 Aligned_cols=39 Identities=26% Similarity=0.482 Sum_probs=35.0
Q ss_pred CCccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCC
Q 008503 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSG 108 (563)
Q Consensus 70 ~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g 108 (563)
...+|+|||||++|+++|+.|++.|++|+|+|+.+..+|
T Consensus 237 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GG 275 (808)
T PLN02328 237 EPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGG 275 (808)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCC
Confidence 357999999999999999999999999999999875444
No 348
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=97.12 E-value=0.0032 Score=65.26 Aligned_cols=101 Identities=20% Similarity=0.157 Sum_probs=78.5
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhhhcc
Q 008503 71 PLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQAK 150 (563)
Q Consensus 71 ~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 150 (563)
.--|++||+|..|+-+|.+|...+++|++|++.+..-- + +
T Consensus 213 ~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~~-------------~---------------l------------ 252 (478)
T KOG1336|consen 213 GGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLLP-------------R---------------L------------ 252 (478)
T ss_pred CceEEEECchHHHHHHHHHHHhcCceEEEEccCccchh-------------h---------------h------------
Confidence 45699999999999999999999999999999852110 0 0
Q ss_pred cCCcceEEEecCceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccCc
Q 008503 151 DRSLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGP 230 (563)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~ 230 (563)
-...+...+.+..+++|++++.++.+.++..+.+ |++.-|.+. ++ .++.|+.||.++|.
T Consensus 253 ---------------f~~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~-Gev~~V~l~---dg--~~l~adlvv~GiG~ 311 (478)
T KOG1336|consen 253 ---------------FGPSIGQFYEDYYENKGVKFYLGTVVSSLEGNSD-GEVSEVKLK---DG--KTLEADLVVVGIGI 311 (478)
T ss_pred ---------------hhHHHHHHHHHHHHhcCeEEEEecceeecccCCC-CcEEEEEec---cC--CEeccCeEEEeecc
Confidence 0011223456667789999999999999998876 899888774 34 37999999999997
Q ss_pred Ch
Q 008503 231 FC 232 (563)
Q Consensus 231 ~s 232 (563)
-.
T Consensus 312 ~p 313 (478)
T KOG1336|consen 312 KP 313 (478)
T ss_pred cc
Confidence 43
No 349
>PF10518 TAT_signal: TAT (twin-arginine translocation) pathway signal sequence; InterPro: IPR019546 The twin-arginine translocation (Tat) pathway serves the role of transporting folded proteins across energy-transducing membranes []. Homologues of the genes that encode the transport apparatus occur in archaea, bacteria, chloroplasts, and plant mitochondria []. In bacteria, the Tat pathway catalyses the export of proteins from the cytoplasm across the inner/cytoplasmic membrane. In chloroplasts, the Tat components are found in the thylakoid membrane and direct the import of proteins from the stroma. The Tat pathway acts separately from the general secretory (Sec) pathway, which transports proteins in an unfolded state []. It is generally accepted that the primary role of the Tat system is to translocate fully folded proteins across membranes. An example of proteins that need to be exported in their 3D conformation are redox proteins that have acquired complex multi-atom cofactors in the bacterial cytoplasm (or the chloroplast stroma or mitochondrial matrix). They include hydrogenases, formate dehydrogenases, nitrate reductases, trimethylamine N-oxide (TMAO) reductases and dimethyl sulphoxide (DMSO) reductases [, ]. The Tat system can also export whole heteroligomeric complexes in which some proteins have no Tat signal. This is the case of the DMSO reductase or formate dehydrogenase complexes. But there are also other cases where the physiological rationale for targeting a protein to the Tat signal is less obvious. Indeed, there are examples of homologous proteins that are in some cases targeted to the Tat pathway and in other cases to the Sec apparatus. Some examples are: copper nitrite reductases, flavin domains of flavocytochrome c and N-acetylmuramoyl-L-alanine amidases []. In halophilic archaea such as Halobacterium almost all secreted proteins appear to be Tat targeted. It has been proposed to be a response to the difficulties these organisms would otherwise face in successfully folding proteins extracellularly at high ionic strength []. The Tat signal peptide consists of three motifs: the positively charged N-terminal motif, the hydrophobic region and the C-terminal region that generally ends with a consensus short motif (A-x-A) specifying cleavage by signal peptidase. Sequence analysis revealed that signal peptides capable of targeting the Tat protein contain the consensus sequence [ST]-R-R-x-F-L-K. The nearly invariant twin-arginine gave rise to the pathway's name. In addition the h-region of Tat signal peptides is typically less hydrophobic than that of Sec-specific signal peptides [, ].
Probab=97.12 E-value=0.00029 Score=42.54 Aligned_cols=18 Identities=39% Similarity=0.372 Sum_probs=14.2
Q ss_pred CcchhhhhhhHHHHHHhh
Q 008503 1 MSATRIRRFGAVLAAAAG 18 (563)
Q Consensus 1 ~srR~f~~~~~~~~a~~a 18 (563)
||||+|||++++++++++
T Consensus 2 ~sRR~fLk~~~a~~a~~~ 19 (26)
T PF10518_consen 2 LSRRQFLKGGAAAAAAAA 19 (26)
T ss_pred CcHHHHHHHHHHHHHHHH
Confidence 699999998887766544
No 350
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.08 E-value=0.0054 Score=67.55 Aligned_cols=96 Identities=21% Similarity=0.178 Sum_probs=67.0
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhhhccc
Q 008503 72 LDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQAKD 151 (563)
Q Consensus 72 ~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 151 (563)
-.|+|||||.+|+-+|..|++.|.+|+++++.+....
T Consensus 144 ~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~~~~------------------------------------------- 180 (555)
T TIGR03143 144 MDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDFTC------------------------------------------- 180 (555)
T ss_pred CEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCcccc-------------------------------------------
Confidence 4799999999999999999999999999998741000
Q ss_pred CCcceEEEecCceechHHHHHHHHHHH-HHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEE--eCe----E
Q 008503 152 RSLKGAVVYYDGQMNDSRLNVGLALTA-ALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTY--AKV----V 224 (563)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~l~~~l~~~a-~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~--A~~----V 224 (563)
+. .+.+.+ .+.|+++++++.|+++..+ +.+..+.+.+..+|+..++. +|. |
T Consensus 181 ---------------~~----~~~~~~~~~~gV~i~~~~~V~~i~~~---~~v~~v~~~~~~~G~~~~~~~~~D~~~~~V 238 (555)
T TIGR03143 181 ---------------AK----LIAEKVKNHPKIEVKFNTELKEATGD---DGLRYAKFVNNVTGEITEYKAPKDAGTFGV 238 (555)
T ss_pred ---------------CH----HHHHHHHhCCCcEEEeCCEEEEEEcC---CcEEEEEEEECCCCCEEEEeccccccceEE
Confidence 00 111122 2469999999999999743 45655555443455544443 666 9
Q ss_pred EEccCcCh
Q 008503 225 VNAAGPFC 232 (563)
Q Consensus 225 I~AtG~~s 232 (563)
|+|+|.-.
T Consensus 239 i~a~G~~P 246 (555)
T TIGR03143 239 FVFVGYAP 246 (555)
T ss_pred EEEeCCCC
Confidence 99999754
No 351
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=96.91 E-value=0.0082 Score=70.35 Aligned_cols=101 Identities=19% Similarity=0.174 Sum_probs=71.7
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCc-EEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhhhcc
Q 008503 72 LDILVIGGGATGCGVALDAATRGLR-VGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQAK 150 (563)
Q Consensus 72 ~DVvIIGaGiaG~~~A~~la~~G~~-V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 150 (563)
-.|+|||||.+|+-+|..+.+.|.+ |.++.+..... .+
T Consensus 572 k~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr~~~e-m~---------------------------------------- 610 (1006)
T PRK12775 572 KSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRRSEAE-AP---------------------------------------- 610 (1006)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEEeecCccc-CC----------------------------------------
Confidence 4799999999999999999999985 77777652100 00
Q ss_pred cCCcceEEEecCceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEEC--------------CCCcE
Q 008503 151 DRSLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNN--------------LSGKE 216 (563)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~--------------~~g~~ 216 (563)
-.+ .-.+.+.+.|+++++++.+.++..+++ |+|.+|.+... .+++.
T Consensus 611 --------------a~~-----~e~~~a~eeGI~~~~~~~p~~i~~~~~-G~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~ 670 (1006)
T PRK12775 611 --------------ARI-----EEIRHAKEEGIDFFFLHSPVEIYVDAE-GSVRGMKVEEMELGEPDEKGRRKPMPTGEF 670 (1006)
T ss_pred --------------CCH-----HHHHHHHhCCCEEEecCCcEEEEeCCC-CeEEEEEEEEEEecccCCCCCccccCCCce
Confidence 000 112346678999999999999976554 78888876421 12334
Q ss_pred EEEEeCeEEEccCcChh
Q 008503 217 FDTYAKVVVNAAGPFCD 233 (563)
Q Consensus 217 ~~i~A~~VI~AtG~~s~ 233 (563)
..+.+|.||+|.|--.+
T Consensus 671 ~~i~~D~Vi~AiG~~p~ 687 (1006)
T PRK12775 671 KDLECDTVIYALGTKAN 687 (1006)
T ss_pred EEEEcCEEEECCCcCCC
Confidence 57999999999997544
No 352
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=96.88 E-value=0.0076 Score=70.82 Aligned_cols=93 Identities=17% Similarity=0.134 Sum_probs=70.8
Q ss_pred ccEEEECCchHHHHHHHHHHHCCC-cEEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhhhcc
Q 008503 72 LDILVIGGGATGCGVALDAATRGL-RVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQAK 150 (563)
Q Consensus 72 ~DVvIIGaGiaG~~~A~~la~~G~-~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 150 (563)
-.|+|||+|..|+-+|..|++.|. .|+|+|..+..
T Consensus 318 k~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~-------------------------------------------- 353 (985)
T TIGR01372 318 KRIVVATNNDSAYRAAADLLAAGIAVVAIIDARADV-------------------------------------------- 353 (985)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcch--------------------------------------------
Confidence 479999999999999999999996 57888876310
Q ss_pred cCCcceEEEecCceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccCc
Q 008503 151 DRSLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGP 230 (563)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~ 230 (563)
...+.+.+++.|+++++++.|+.+..+ +++.+|++.. .++...++.+|.|+++.|.
T Consensus 354 --------------------~~~l~~~L~~~GV~i~~~~~v~~i~g~---~~v~~V~l~~-~~g~~~~i~~D~V~va~G~ 409 (985)
T TIGR01372 354 --------------------SPEARAEARELGIEVLTGHVVAATEGG---KRVSGVAVAR-NGGAGQRLEADALAVSGGW 409 (985)
T ss_pred --------------------hHHHHHHHHHcCCEEEcCCeEEEEecC---CcEEEEEEEe-cCCceEEEECCEEEEcCCc
Confidence 001334556789999999999998654 4677787763 2344567999999999996
Q ss_pred Ch
Q 008503 231 FC 232 (563)
Q Consensus 231 ~s 232 (563)
-.
T Consensus 410 ~P 411 (985)
T TIGR01372 410 TP 411 (985)
T ss_pred Cc
Confidence 54
No 353
>PLN03000 amine oxidase
Probab=96.74 E-value=0.0019 Score=73.00 Aligned_cols=39 Identities=21% Similarity=0.430 Sum_probs=35.1
Q ss_pred CCccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCC
Q 008503 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSG 108 (563)
Q Consensus 70 ~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g 108 (563)
...||+|||||++|+.+|+.|.+.|++|+|+|+.+..+|
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGG 221 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGG 221 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCC
Confidence 358999999999999999999999999999999875444
No 354
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=96.73 E-value=0.0017 Score=66.25 Aligned_cols=39 Identities=31% Similarity=0.414 Sum_probs=32.3
Q ss_pred CCccEEEECCchHHHHHHHHHHHCCCcE--EEEeccCCCCC
Q 008503 70 NPLDILVIGGGATGCGVALDAATRGLRV--GLVEREDFSSG 108 (563)
Q Consensus 70 ~~~DVvIIGaGiaG~~~A~~la~~G~~V--~llEk~~~~~g 108 (563)
...+|+||||||+|+++||+|++++-+| +|+|+.+-.+|
T Consensus 10 ~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGG 50 (491)
T KOG1276|consen 10 SGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGG 50 (491)
T ss_pred ecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccc
Confidence 3479999999999999999999998765 55999864333
No 355
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=96.63 E-value=0.02 Score=64.25 Aligned_cols=99 Identities=24% Similarity=0.348 Sum_probs=66.4
Q ss_pred ccEEEECCchHHHHHHHHHHHCCC-cEEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhhhcc
Q 008503 72 LDILVIGGGATGCGVALDAATRGL-RVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQAK 150 (563)
Q Consensus 72 ~DVvIIGaGiaG~~~A~~la~~G~-~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 150 (563)
-.|+|||||.+|+-+|..+.+.|. +|+|+.+.+... + +.
T Consensus 324 k~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~~~~---------m-pa------------------------------ 363 (652)
T PRK12814 324 KKVVVIGGGNTAIDAARTALRLGAESVTILYRRTREE---------M-PA------------------------------ 363 (652)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCccc---------C-CC------------------------------
Confidence 479999999999999999999997 599998764200 0 00
Q ss_pred cCCcceEEEecCceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcE--EEEEEEEC------------CCCcE
Q 008503 151 DRSLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRI--IGARIRNN------------LSGKE 216 (563)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v--~gv~~~d~------------~~g~~ 216 (563)
.+. .++.+.+.|++|++++.++++..++ +++ ..+.+... .++..
T Consensus 364 ---------------~~~-----ei~~a~~eGV~i~~~~~~~~i~~~~--~~~~v~~~~~~~~~~d~~G~~~~~~~~g~~ 421 (652)
T PRK12814 364 ---------------NRA-----EIEEALAEGVSLRELAAPVSIERSE--GGLELTAIKMQQGEPDESGRRRPVPVEGSE 421 (652)
T ss_pred ---------------CHH-----HHHHHHHcCCcEEeccCcEEEEecC--CeEEEEEEEEEecccCCCCCCcceecCCce
Confidence 001 1222346799999999998887654 333 23333210 12444
Q ss_pred EEEEeCeEEEccCcCh
Q 008503 217 FDTYAKVVVNAAGPFC 232 (563)
Q Consensus 217 ~~i~A~~VI~AtG~~s 232 (563)
..+.+|.||.|+|...
T Consensus 422 ~~i~~D~VI~AiG~~p 437 (652)
T PRK12814 422 FTLQADTVISAIGQQV 437 (652)
T ss_pred EEEECCEEEECCCCcC
Confidence 5799999999999643
No 356
>PLN02976 amine oxidase
Probab=96.62 E-value=0.0025 Score=74.72 Aligned_cols=40 Identities=25% Similarity=0.436 Sum_probs=35.3
Q ss_pred CCccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCC
Q 008503 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGT 109 (563)
Q Consensus 70 ~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~ 109 (563)
..+||+|||||++|+++|+.|++.|++|+|+|+.+..+|.
T Consensus 692 ~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGr 731 (1713)
T PLN02976 692 DRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGR 731 (1713)
T ss_pred CCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCc
Confidence 4589999999999999999999999999999998654443
No 357
>PRK13984 putative oxidoreductase; Provisional
Probab=96.60 E-value=0.018 Score=64.13 Aligned_cols=53 Identities=13% Similarity=0.218 Sum_probs=38.1
Q ss_pred HHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEEC-----C---------CCcEEEEEeCeEEEccCcCh
Q 008503 178 AALAGAAVLNHAEVISLIKDEASNRIIGARIRNN-----L---------SGKEFDTYAKVVVNAAGPFC 232 (563)
Q Consensus 178 a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~-----~---------~g~~~~i~A~~VI~AtG~~s 232 (563)
+.+.|+++++++.+..+..++ ++|.+|.+... . ++....+.+|.||+|.|.-.
T Consensus 472 ~~~~GV~i~~~~~~~~i~~~~--g~v~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i~aD~Vi~aiG~~p 538 (604)
T PRK13984 472 GLEEGVVIYPGWGPMEVVIEN--DKVKGVKFKKCVEVFDEEGRFNPKFDESDQIIVEADMVVEAIGQAP 538 (604)
T ss_pred HHHcCCEEEeCCCCEEEEccC--CEEEEEEEEEEeeccCCCCCccceecCCceEEEECCEEEEeeCCCC
Confidence 346799999999888886543 67888766421 1 22345799999999999643
No 358
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.55 E-value=0.023 Score=57.95 Aligned_cols=147 Identities=17% Similarity=0.135 Sum_probs=80.0
Q ss_pred CCCccEEEECCchHHHHHHHHHHHCC-CcEEEEeccC-CCCCCccCCCCccccchhhHHHHhhcc----CcccHHHHHHH
Q 008503 69 SNPLDILVIGGGATGCGVALDAATRG-LRVGLVERED-FSSGTSSRSTKLIHGGVRYLEKAVFNL----DYGQLKLVFHA 142 (563)
Q Consensus 69 ~~~~DVvIIGaGiaG~~~A~~la~~G-~~V~llEk~~-~~~g~s~~~~~~~~~g~~~~~~~~~~~----~~~~~~~~~~~ 142 (563)
+..+|++.||-|+.-++.|..|.+.+ .+++.+||.+ +.+ .-|++-.|....-..++++ +....-.....
T Consensus 3 ~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F~W-----HpGmllegstlQv~FlkDLVTl~~PTs~ySFLNY 77 (436)
T COG3486 3 AEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDFSW-----HPGMLLEGSTLQVPFLKDLVTLVDPTSPYSFLNY 77 (436)
T ss_pred CcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCCCc-----CCCcccCCccccccchhhhccccCCCCchHHHHH
Confidence 46799999999999999999999885 8899999984 322 1233323322211111111 11011112233
Q ss_pred HHHhhhcccCCcceEEEecCceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeC
Q 008503 143 LEERKQAKDRSLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAK 222 (563)
Q Consensus 143 l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~ 222 (563)
+.+++.+ ..-+.+..-.+-..++...+.-.|... -.++++++|++|..-+. +.+....+.. .++ ..++|+
T Consensus 78 L~~h~RL-----y~Fl~~e~f~i~R~Ey~dY~~Waa~~l-~~~rfg~~V~~i~~~~~-d~~~~~~~~t-~~~--~~y~ar 147 (436)
T COG3486 78 LHEHGRL-----YEFLNYETFHIPRREYNDYCQWAASQL-PSLRFGEEVTDISSLDG-DAVVRLFVVT-ANG--TVYRAR 147 (436)
T ss_pred HHHcchH-----hhhhhhhcccccHHHHHHHHHHHHhhC-CccccCCeeccccccCC-cceeEEEEEc-CCC--cEEEee
Confidence 3333322 111112222233445555544444444 78899999998843322 2222221211 223 389999
Q ss_pred eEEEccCc
Q 008503 223 VVVNAAGP 230 (563)
Q Consensus 223 ~VI~AtG~ 230 (563)
.||+.+|.
T Consensus 148 ~lVlg~G~ 155 (436)
T COG3486 148 NLVLGVGT 155 (436)
T ss_pred eEEEccCC
Confidence 99999995
No 359
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=96.51 E-value=0.036 Score=57.61 Aligned_cols=95 Identities=23% Similarity=0.259 Sum_probs=64.3
Q ss_pred ccEEEECCchHHHHHHHHHHH----CC--CcEEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHH
Q 008503 72 LDILVIGGGATGCGVALDAAT----RG--LRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEE 145 (563)
Q Consensus 72 ~DVvIIGaGiaG~~~A~~la~----~G--~~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~ 145 (563)
-.|+|||+|.+|+-+|..|++ +| .+|+|+....+...
T Consensus 146 ~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li~~~~~l~~------------------------------------- 188 (364)
T TIGR03169 146 KRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLIAGASLLPG------------------------------------- 188 (364)
T ss_pred ceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEEeCCccccc-------------------------------------
Confidence 489999999999999999985 35 47888832211000
Q ss_pred hhhcccCCcceEEEecCceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEE
Q 008503 146 RKQAKDRSLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVV 225 (563)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI 225 (563)
+ +..+...+.+.+++.|+++++++.|..+.. + .|.+ .++ .++.+|.||
T Consensus 189 -------------------~-~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~----~---~v~~---~~g--~~i~~D~vi 236 (364)
T TIGR03169 189 -------------------F-PAKVRRLVLRLLARRGIEVHEGAPVTRGPD----G---ALIL---ADG--RTLPADAIL 236 (364)
T ss_pred -------------------C-CHHHHHHHHHHHHHCCCEEEeCCeeEEEcC----C---eEEe---CCC--CEEecCEEE
Confidence 0 111223455667789999999999998742 2 2333 234 378999999
Q ss_pred EccCcChhhh
Q 008503 226 NAAGPFCDSV 235 (563)
Q Consensus 226 ~AtG~~s~~l 235 (563)
+|+|......
T Consensus 237 ~a~G~~p~~~ 246 (364)
T TIGR03169 237 WATGARAPPW 246 (364)
T ss_pred EccCCChhhH
Confidence 9999765443
No 360
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=96.47 E-value=0.058 Score=55.93 Aligned_cols=57 Identities=18% Similarity=0.073 Sum_probs=43.5
Q ss_pred hHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccCcCh
Q 008503 167 DSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 232 (563)
Q Consensus 167 ~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~~s 232 (563)
...++..|...+++.||+|+++++|++| ++ +. +.+.+. ++ ...++|+.||+|||..+
T Consensus 85 A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~--~~-~~v~~~---~~-~~~~~a~~vIlAtGG~s 141 (376)
T TIGR03862 85 AAPLLRAWLKRLAEQGVQFHTRHRWIGW--QG--GT-LRFETP---DG-QSTIEADAVVLALGGAS 141 (376)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCEEEEE--eC--Cc-EEEEEC---CC-ceEEecCEEEEcCCCcc
Confidence 4678889999999999999999999999 22 22 345431 22 23689999999999855
No 361
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=96.45 E-value=0.012 Score=61.97 Aligned_cols=52 Identities=21% Similarity=0.300 Sum_probs=36.2
Q ss_pred HHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccCcCh
Q 008503 173 GLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 232 (563)
Q Consensus 173 ~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~~s 232 (563)
.+...+...|.+|+++++|++|..++ ++|. |.. .+|+ .+.||.||+|+....
T Consensus 214 ~~~~~~~~~g~~i~l~~~V~~I~~~~--~~v~-v~~---~~g~--~~~ad~VI~a~p~~~ 265 (450)
T PF01593_consen 214 ALALAAEELGGEIRLNTPVTRIERED--GGVT-VTT---EDGE--TIEADAVISAVPPSV 265 (450)
T ss_dssp HHHHHHHHHGGGEESSEEEEEEEEES--SEEE-EEE---TTSS--EEEESEEEE-S-HHH
T ss_pred HHHHHHhhcCceeecCCcceeccccc--cccc-ccc---ccce--EEecceeeecCchhh
Confidence 33444455678999999999999986 4553 333 3454 799999999998754
No 362
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=96.40 E-value=0.0091 Score=67.32 Aligned_cols=38 Identities=26% Similarity=0.351 Sum_probs=34.3
Q ss_pred CCccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCC
Q 008503 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSS 107 (563)
Q Consensus 70 ~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~ 107 (563)
.-..|.|||.|++|+++|-.|-+.|+.|+|+||.+-.+
T Consensus 1784 tg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~g 1821 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVG 1821 (2142)
T ss_pred cCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcC
Confidence 34789999999999999999999999999999997543
No 363
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=96.39 E-value=0.0047 Score=64.02 Aligned_cols=40 Identities=28% Similarity=0.434 Sum_probs=33.3
Q ss_pred CCCccEEEECCchHHHHHHHHHHHCC-CcEEEEeccCCCCC
Q 008503 69 SNPLDILVIGGGATGCGVALDAATRG-LRVGLVEREDFSSG 108 (563)
Q Consensus 69 ~~~~DVvIIGaGiaG~~~A~~la~~G-~~V~llEk~~~~~g 108 (563)
..+..|||||||++|+++|..|-+.| .+|+|+|..+--+|
T Consensus 19 ~~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGG 59 (498)
T KOG0685|consen 19 RGNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGG 59 (498)
T ss_pred cCCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCc
Confidence 34568999999999999999999776 57999999874444
No 364
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=96.33 E-value=0.011 Score=59.60 Aligned_cols=39 Identities=21% Similarity=0.338 Sum_probs=33.9
Q ss_pred CCccEEEECCchHHHHHHHHHHHC--CCcEEEEeccCCCCC
Q 008503 70 NPLDILVIGGGATGCGVALDAATR--GLRVGLVEREDFSSG 108 (563)
Q Consensus 70 ~~~DVvIIGaGiaG~~~A~~la~~--G~~V~llEk~~~~~g 108 (563)
....|+|||+|++|..+|..|.++ +++|.++|+.+...|
T Consensus 19 ~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFG 59 (468)
T KOG1800|consen 19 STPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFG 59 (468)
T ss_pred CCceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccc
Confidence 345899999999999999999985 799999999976554
No 365
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=96.11 E-value=0.057 Score=62.52 Aligned_cols=33 Identities=33% Similarity=0.474 Sum_probs=28.9
Q ss_pred ccEEEECCchHHHHHHHHHHHC-C-CcEEEEeccC
Q 008503 72 LDILVIGGGATGCGVALDAATR-G-LRVGLVERED 104 (563)
Q Consensus 72 ~DVvIIGaGiaG~~~A~~la~~-G-~~V~llEk~~ 104 (563)
-.|+|||||.+|+-+|..+.+. | .+|.++.+.+
T Consensus 669 KrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~ 703 (1019)
T PRK09853 669 KHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT 703 (1019)
T ss_pred CEEEEECCChHHHHHHHHHHhcCCCceEEEEEccC
Confidence 4799999999999999999887 4 3899999874
No 366
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=96.02 E-value=0.082 Score=61.43 Aligned_cols=34 Identities=32% Similarity=0.489 Sum_probs=29.5
Q ss_pred CccEEEECCchHHHHHHHHHHHC-CC-cEEEEeccC
Q 008503 71 PLDILVIGGGATGCGVALDAATR-GL-RVGLVERED 104 (563)
Q Consensus 71 ~~DVvIIGaGiaG~~~A~~la~~-G~-~V~llEk~~ 104 (563)
.-.|+|||||.+|+-+|..+.+. |. +|.+|++.+
T Consensus 666 GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~ 701 (1012)
T TIGR03315 666 GKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT 701 (1012)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccC
Confidence 34799999999999999999886 86 799999874
No 367
>PRK10509 bacterioferritin-associated ferredoxin; Provisional
Probab=95.91 E-value=0.008 Score=45.20 Aligned_cols=50 Identities=8% Similarity=0.032 Sum_probs=42.5
Q ss_pred CCCccHHHHHHHHHhcCCCChhHHHHhhcccccCChHHHhhhHHHHHHHHHHHcC
Q 008503 475 GYPFLEAEVAYCARNEYCESAVDFVARRCRLAFLDTDAAGRALPRIIEIMATEHK 529 (563)
Q Consensus 475 c~~v~~~ei~~ai~~e~~~~~~D~l~rRtr~g~g~~~~g~~~~~~v~~~la~~l~ 529 (563)
|..||+.+|+.||+.. +.+..+.|.+.|++|.+ |. .|.+.+.++|.+.+.
T Consensus 6 C~~Vtd~~I~~ai~~~-g~~s~~~l~~~~~~g~~--CG--~C~~~i~~il~~~~~ 55 (64)
T PRK10509 6 CNGVSDKKIRQAVRQF-HPQSFQQLRKFVPVGNQ--CG--KCIRAAREVMQDELM 55 (64)
T ss_pred cCCCCHHHHHHHHHHc-CCCCHHHHHHhcCCCCC--cc--chHHHHHHHHHHHHH
Confidence 9999999999999853 56667889999999985 74 599999999987754
No 368
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=95.91 E-value=0.064 Score=54.06 Aligned_cols=94 Identities=27% Similarity=0.287 Sum_probs=73.1
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhhhccc
Q 008503 72 LDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQAKD 151 (563)
Q Consensus 72 ~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 151 (563)
.||+|||||-+.+--|+.|++.+-+|.|+=|.+--..
T Consensus 144 k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~ra------------------------------------------- 180 (305)
T COG0492 144 KDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEFRA------------------------------------------- 180 (305)
T ss_pred CeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCcccCc-------------------------------------------
Confidence 4999999999999999999999999999988751100
Q ss_pred CCcceEEEecCceechHHHHHHHHHHHHHC-CCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccCc
Q 008503 152 RSLKGAVVYYDGQMNDSRLNVGLALTAALA-GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGP 230 (563)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~-G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~ 230 (563)
...+.+.+.++ ++++++++.+..+..+ + |.+|++++.. +....+..+.|+.+.|.
T Consensus 181 -------------------~~~~~~~l~~~~~i~~~~~~~i~ei~G~---~-v~~v~l~~~~-~~~~~~~~~gvf~~iG~ 236 (305)
T COG0492 181 -------------------EEILVERLKKNVKIEVLTNTVVKEILGD---D-VEGVVLKNVK-GEEKELPVDGVFIAIGH 236 (305)
T ss_pred -------------------CHHHHHHHHhcCCeEEEeCCceeEEecC---c-cceEEEEecC-CceEEEEeceEEEecCC
Confidence 01344455555 7999999999998755 3 7788888743 56678899999999997
Q ss_pred Ch
Q 008503 231 FC 232 (563)
Q Consensus 231 ~s 232 (563)
-.
T Consensus 237 ~p 238 (305)
T COG0492 237 LP 238 (305)
T ss_pred CC
Confidence 44
No 369
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=95.78 E-value=0.098 Score=56.64 Aligned_cols=33 Identities=30% Similarity=0.406 Sum_probs=28.7
Q ss_pred ccEEEECCchHHHHHHHHHHHCCC-cEEEEeccC
Q 008503 72 LDILVIGGGATGCGVALDAATRGL-RVGLVERED 104 (563)
Q Consensus 72 ~DVvIIGaGiaG~~~A~~la~~G~-~V~llEk~~ 104 (563)
-.|+|||||.+|+-+|..+.+.|. +|.++|..+
T Consensus 284 k~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~ 317 (485)
T TIGR01317 284 KKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMP 317 (485)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecC
Confidence 479999999999999988888875 699998864
No 370
>PLN02852 ferredoxin-NADP+ reductase
Probab=95.72 E-value=0.13 Score=55.49 Aligned_cols=52 Identities=10% Similarity=0.139 Sum_probs=37.6
Q ss_pred CCCEEEcCcEEEEEEEcC-CCCcEEEEEEEEC--------------CCCcEEEEEeCeEEEccCcCh
Q 008503 181 AGAAVLNHAEVISLIKDE-ASNRIIGARIRNN--------------LSGKEFDTYAKVVVNAAGPFC 232 (563)
Q Consensus 181 ~G~~i~~~~~v~~l~~~~-~~g~v~gv~~~d~--------------~~g~~~~i~A~~VI~AtG~~s 232 (563)
.+++|++....+.|..++ ++++|.++.+... .+|+...+.++.||.|-|.-+
T Consensus 288 ~~v~~~f~~sP~ei~~~~~~~~~v~~l~~~~~~l~~~~~~g~~~~~~tge~~~i~~D~Vi~aIG~~~ 354 (491)
T PLN02852 288 RELHFVFFRNPTRFLDSGDGNGHVAGVKLERTVLEGAAGSGKQVAVGTGEFEDLPCGLVLKSIGYKS 354 (491)
T ss_pred ceEEEEccCCCeEEEccCCCCCcEEEEEEEEeecCCCcccCCcccCCCCCEEEEECCEEEEeecCCC
Confidence 478999999888887432 1168999887521 145566789999999999643
No 371
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=95.60 E-value=0.044 Score=62.80 Aligned_cols=56 Identities=16% Similarity=0.128 Sum_probs=43.4
Q ss_pred HHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECC------------CC-------------cEEEEEeCeEEEccC
Q 008503 175 ALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNL------------SG-------------KEFDTYAKVVVNAAG 229 (563)
Q Consensus 175 ~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~------------~g-------------~~~~i~A~~VI~AtG 229 (563)
++.|.+.|++|.+++....+..+++ |++.++.+.... ++ ....+.||.||+|.|
T Consensus 647 v~~A~eEGV~f~~~~~P~~i~~d~~-g~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vi~A~G 725 (1028)
T PRK06567 647 LIYALALGVDFKENMQPLRINVDKY-GHVESVEFENRNRHCEQSKTAWQSHEFGLTRLPRQCYAFPRNDIKTKTVIMAIG 725 (1028)
T ss_pred HHHHHHcCcEEEecCCcEEEEecCC-CeEEEEEEEEEecccccccccccccccccCCcCcccCCCccccccCCEEEEecc
Confidence 4567789999999999999987755 789998876321 11 346799999999999
Q ss_pred cC
Q 008503 230 PF 231 (563)
Q Consensus 230 ~~ 231 (563)
--
T Consensus 726 ~~ 727 (1028)
T PRK06567 726 IE 727 (1028)
T ss_pred cC
Confidence 53
No 372
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.46 E-value=0.11 Score=51.80 Aligned_cols=95 Identities=26% Similarity=0.334 Sum_probs=70.9
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhhhccc
Q 008503 72 LDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQAKD 151 (563)
Q Consensus 72 ~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 151 (563)
.||+|||||.+|.-+|+.||--=..|+|+|=.+- ++.
T Consensus 355 K~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~e------------------------------LkA------------- 391 (520)
T COG3634 355 KRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPE------------------------------LKA------------- 391 (520)
T ss_pred ceEEEECCCcchHHHHHhHHhhhheeeeeecchh------------------------------hhh-------------
Confidence 4899999999999999999976668999986531 000
Q ss_pred CCcceEEEecCceechHHHHHHHHHHHH-HCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccCc
Q 008503 152 RSLKGAVVYYDGQMNDSRLNVGLALTAA-LAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGP 230 (563)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~l~~~l~~~a~-~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~ 230 (563)
-..|.+.+. -.+++++.+..-+.+.-++ .+|+|+..+|+.+|+...+.=..|.+--|.
T Consensus 392 -------------------D~VLq~kl~sl~Nv~ii~na~Ttei~Gdg--~kV~Gl~Y~dr~sge~~~l~LeGvFVqIGL 450 (520)
T COG3634 392 -------------------DAVLQDKLRSLPNVTIITNAQTTEVKGDG--DKVTGLEYRDRVSGEEHHLELEGVFVQIGL 450 (520)
T ss_pred -------------------HHHHHHHHhcCCCcEEEecceeeEEecCC--ceecceEEEeccCCceeEEEeeeeEEEEec
Confidence 002223332 2689999999999988775 589999999988887767776777777774
No 373
>COG2906 Bfd Bacterioferritin-associated ferredoxin [Inorganic ion transport and metabolism]
Probab=95.37 E-value=0.024 Score=41.65 Aligned_cols=49 Identities=4% Similarity=0.017 Sum_probs=41.2
Q ss_pred CCCccHHHHHHHHHhcCCCChhHHHHhhcccccCChHHHhhhHHHHHHHHHHHcC
Q 008503 475 GYPFLEAEVAYCARNEYCESAVDFVARRCRLAFLDTDAAGRALPRIIEIMATEHK 529 (563)
Q Consensus 475 c~~v~~~ei~~ai~~e~~~~~~D~l~rRtr~g~g~~~~g~~~~~~v~~~la~~l~ 529 (563)
|+.||..+|+.||+. +.++.+.|+++|.+|- .|. .|.....++|.+++-
T Consensus 6 CngVtD~~Ir~av~~--g~tt~~el~~~~gvGs--~CG--kC~~~Arevl~e~~~ 54 (63)
T COG2906 6 CNGVTDKQIREAVAQ--GATTLKELRRFTGVGS--QCG--KCVRAAREVLEEALA 54 (63)
T ss_pred ecCccHHHHHHHHHH--cCCCHHHHHHHcCccc--chH--HHHHHHHHHHHHHHH
Confidence 999999999999996 4777777999998886 463 699999999988764
No 374
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=95.28 E-value=0.017 Score=57.02 Aligned_cols=34 Identities=38% Similarity=0.444 Sum_probs=31.1
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEeccCC
Q 008503 72 LDILVIGGGATGCGVALDAATRGLRVGLVEREDF 105 (563)
Q Consensus 72 ~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~ 105 (563)
.-|-|||||.+|.-+||.++++|..|.|.|-.+.
T Consensus 4 ~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~ 37 (439)
T COG1206 4 QPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPV 37 (439)
T ss_pred CceEEEcccccccHHHHHHHHcCCcEEEEEcccc
Confidence 3589999999999999999999999999998753
No 375
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=95.17 E-value=0.026 Score=52.35 Aligned_cols=31 Identities=39% Similarity=0.567 Sum_probs=27.6
Q ss_pred EEEECCchHHHHHHHHHHHCCCcEEEEeccC
Q 008503 74 ILVIGGGATGCGVALDAATRGLRVGLVERED 104 (563)
Q Consensus 74 VvIIGaGiaG~~~A~~la~~G~~V~llEk~~ 104 (563)
|.|||+|..|..+|..++..|++|.|+|.++
T Consensus 2 V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 32 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARAGYEVTLYDRSP 32 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred EEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence 7899999999999999999999999999973
No 376
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=94.97 E-value=0.11 Score=52.96 Aligned_cols=40 Identities=30% Similarity=0.554 Sum_probs=36.0
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCc
Q 008503 71 PLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTS 110 (563)
Q Consensus 71 ~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s 110 (563)
+|||+|.|-|..=|..+..|+..|.+|+.+||++.-++.|
T Consensus 4 eyDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yYG~~s 43 (440)
T KOG1439|consen 4 EYDVIVLGTGLTECILSGALSVDGKKVLHIDRNDYYGGES 43 (440)
T ss_pred ceeEEEEcCCchhheeeeeeeecCcEEEEEeCCCCCCccc
Confidence 4999999999999999999999999999999998655544
No 377
>COG4716 Myosin-crossreactive antigen [Function unknown]
Probab=94.94 E-value=0.026 Score=56.66 Aligned_cols=63 Identities=11% Similarity=0.147 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEE--EEEEECCCCcEEEEEe-CeEEEccCcChh
Q 008503 169 RLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIG--ARIRNNLSGKEFDTYA-KVVVNAAGPFCD 233 (563)
Q Consensus 169 ~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~g--v~~~d~~~g~~~~i~A-~~VI~AtG~~s~ 233 (563)
.++.-|...+..+||++.+++.|.+|..+...|+.+. +.+. .+++..++.- |.|++..|...+
T Consensus 228 SlvlPli~yL~~H~Vdf~~~~~Vedi~v~~t~gkkvA~aih~~--~d~~~ieLt~dDlVfvTNgsiTe 293 (587)
T COG4716 228 SLVLPLITYLKSHGVDFTYDQKVEDIDVDDTPGKKVAKAIHVL--GDAETIELTPDDLVFVTNGSITE 293 (587)
T ss_pred HHHHHHHHHHHHcCCceEeccEEeeeeeccCcchhHHHHHHHh--cCcceeecCCCceEEEecceecc
Confidence 4677788889999999999999999987654342211 1111 2334445555 678888886543
No 378
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=94.91 E-value=0.081 Score=54.35 Aligned_cols=104 Identities=23% Similarity=0.228 Sum_probs=71.3
Q ss_pred ccEEEECCchHHHHHHHHHHH--------------CCCcEEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHH
Q 008503 72 LDILVIGGGATGCGVALDAAT--------------RGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLK 137 (563)
Q Consensus 72 ~DVvIIGaGiaG~~~A~~la~--------------~G~~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~ 137 (563)
-.+||||||++|+-.|-+|+- .-.+|+|+|+.|-. +.+
T Consensus 219 Lh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~i--------------L~m-------------- 270 (491)
T KOG2495|consen 219 LHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHI--------------LNM-------------- 270 (491)
T ss_pred EEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhH--------------HHH--------------
Confidence 468999999999999999973 24578888877510 000
Q ss_pred HHHHHHHHhhhcccCCcceEEEecCceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEE
Q 008503 138 LVFHALEERKQAKDRSLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEF 217 (563)
Q Consensus 138 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~ 217 (563)
-+.++.....+...+.|+.+..++.|..+... .+.+.+ .+|+..
T Consensus 271 ----------------------------Fdkrl~~yae~~f~~~~I~~~~~t~Vk~V~~~-------~I~~~~-~~g~~~ 314 (491)
T KOG2495|consen 271 ----------------------------FDKRLVEYAENQFVRDGIDLDTGTMVKKVTEK-------TIHAKT-KDGEIE 314 (491)
T ss_pred ----------------------------HHHHHHHHHHHHhhhccceeecccEEEeecCc-------EEEEEc-CCCcee
Confidence 11233344455567789999999999887533 234444 466667
Q ss_pred EEEeCeEEEccCcChhhhhhhh
Q 008503 218 DTYAKVVVNAAGPFCDSVRKLA 239 (563)
Q Consensus 218 ~i~A~~VI~AtG~~s~~l~~~~ 239 (563)
+|..-.+|-+||.....+...+
T Consensus 315 ~iPYG~lVWatG~~~rp~~k~l 336 (491)
T KOG2495|consen 315 EIPYGLLVWATGNGPRPVIKDL 336 (491)
T ss_pred eecceEEEecCCCCCchhhhhH
Confidence 7888999999998765554433
No 379
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=94.90 E-value=0.19 Score=47.23 Aligned_cols=94 Identities=26% Similarity=0.287 Sum_probs=74.5
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhhhcccC
Q 008503 73 DILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQAKDR 152 (563)
Q Consensus 73 DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 152 (563)
-.+|||||=+-+-=|..|.+++-+|-+|-|.|.-
T Consensus 159 ~laVIGGGDsA~EEA~fLtkyaskVyii~Rrd~f---------------------------------------------- 192 (322)
T KOG0404|consen 159 PLAVIGGGDSAMEEALFLTKYASKVYIIHRRDHF---------------------------------------------- 192 (322)
T ss_pred eeEEEcCcHHHHHHHHHHHhhccEEEEEEEhhhh----------------------------------------------
Confidence 4899999999999999999999999999887510
Q ss_pred CcceEEEecCceechHHHHHHHHHHHHHC-CCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccCc
Q 008503 153 SLKGAVVYYDGQMNDSRLNVGLALTAALA-GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGP 230 (563)
Q Consensus 153 ~~~~~~~~~~~~~~~~~l~~~l~~~a~~~-G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~ 230 (563)
+....|.+.+.++ ++++++++.+.+...+. +.+.++.+++..+|+...+..+.+..+-|.
T Consensus 193 ----------------RAs~~Mq~ra~~npnI~v~~nt~~~ea~gd~--~~l~~l~ikn~~tge~~dl~v~GlFf~IGH 253 (322)
T KOG0404|consen 193 ----------------RASKIMQQRAEKNPNIEVLYNTVAVEALGDG--KLLNGLRIKNVKTGEETDLPVSGLFFAIGH 253 (322)
T ss_pred ----------------hHHHHHHHHHhcCCCeEEEechhhhhhccCc--ccccceEEEecccCcccccccceeEEEecC
Confidence 1112455555554 78999999888776553 567788888888888888999999999986
No 380
>TIGR02811 formate_TAT formate dehydrogenase region TAT target. Members of this uncharacterized protein family are all small, extending 70 or fewer residues from their respective likely start codons. All have the twin-arginine-dependent tranport (TAT) signal sequence at the N-terminus and a conserved 20-residue C-terminal region that includes the motif Y-[HRK]-X-[TS]-X-H-[IV]-X-X-[YF]-Y. The TAT signal sequence suggests a bound cofactor. All members are encoded near genes for subunits of formate dehydrogenase, and may themselves be a subunit or accessory protein.
Probab=94.40 E-value=0.031 Score=42.20 Aligned_cols=18 Identities=28% Similarity=0.004 Sum_probs=13.1
Q ss_pred CcchhhhhhhHHHHHHhh
Q 008503 1 MSATRIRRFGAVLAAAAG 18 (563)
Q Consensus 1 ~srR~f~~~~~~~~a~~a 18 (563)
+|||+|||+.++++++++
T Consensus 9 ~sRR~Flk~lg~~aaa~~ 26 (66)
T TIGR02811 9 PSRRDLLKGLGVGAAAGA 26 (66)
T ss_pred ccHHHHHHHHHHHHHHHH
Confidence 489999998776555433
No 381
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=94.38 E-value=0.017 Score=56.87 Aligned_cols=36 Identities=36% Similarity=0.671 Sum_probs=31.1
Q ss_pred CCCccEEEECCchHHHHHHHHHHHC-C-CcEEEEeccC
Q 008503 69 SNPLDILVIGGGATGCGVALDAATR-G-LRVGLVERED 104 (563)
Q Consensus 69 ~~~~DVvIIGaGiaG~~~A~~la~~-G-~~V~llEk~~ 104 (563)
..+|.|+|||||..|+++|..+.++ | -+|.+||..+
T Consensus 37 ~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e 74 (446)
T KOG3851|consen 37 RKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAE 74 (446)
T ss_pred ccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchh
Confidence 5789999999999999999999876 3 4799998764
No 382
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=94.31 E-value=0.059 Score=48.20 Aligned_cols=30 Identities=47% Similarity=0.584 Sum_probs=28.8
Q ss_pred EEEECCchHHHHHHHHHHHCCCcEEEEecc
Q 008503 74 ILVIGGGATGCGVALDAATRGLRVGLVERE 103 (563)
Q Consensus 74 VvIIGaGiaG~~~A~~la~~G~~V~llEk~ 103 (563)
|+|||+|..|+..|+.|++.|.+|.++.+.
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~ 30 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRS 30 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEcc
Confidence 689999999999999999999999999887
No 383
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=94.18 E-value=0.055 Score=48.94 Aligned_cols=30 Identities=40% Similarity=0.474 Sum_probs=28.9
Q ss_pred EEEECCchHHHHHHHHHHHCCCcEEEEecc
Q 008503 74 ILVIGGGATGCGVALDAATRGLRVGLVERE 103 (563)
Q Consensus 74 VvIIGaGiaG~~~A~~la~~G~~V~llEk~ 103 (563)
|.|||||..|.++|..|+.+|.+|.|..+.
T Consensus 2 I~ViGaG~~G~AlA~~la~~g~~V~l~~~~ 31 (157)
T PF01210_consen 2 IAVIGAGNWGTALAALLADNGHEVTLWGRD 31 (157)
T ss_dssp EEEESSSHHHHHHHHHHHHCTEEEEEETSC
T ss_pred EEEECcCHHHHHHHHHHHHcCCEEEEEecc
Confidence 799999999999999999999999999886
No 384
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=94.03 E-value=0.069 Score=51.44 Aligned_cols=32 Identities=34% Similarity=0.665 Sum_probs=30.6
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEeccC
Q 008503 73 DILVIGGGATGCGVALDAATRGLRVGLVERED 104 (563)
Q Consensus 73 DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~ 104 (563)
+++|||+|-.|...|..|++.|++|++||+++
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~ 33 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDE 33 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCCceEEEEcCH
Confidence 68999999999999999999999999999984
No 385
>TIGR01409 TAT_signal_seq Tat (twin-arginine translocation) pathway signal sequence. Members with small amino acid side chains at the -1 and -3 positions from the C-terminus of the model should be predicted to be cleaved as are Sec pathway signal sequences. Members are almost exclusively bacterial, although archaeal sequences are also found. A large fraction of the members of this family may have bound redox-active cofactors.
Probab=93.71 E-value=0.047 Score=33.92 Aligned_cols=16 Identities=25% Similarity=0.154 Sum_probs=12.4
Q ss_pred CcchhhhhhhHHHHHH
Q 008503 1 MSATRIRRFGAVLAAA 16 (563)
Q Consensus 1 ~srR~f~~~~~~~~a~ 16 (563)
+|||+|||..++++++
T Consensus 1 ~sRR~Flk~~~~~~a~ 16 (29)
T TIGR01409 1 LSRRDFLKGAAAAGAA 16 (29)
T ss_pred CchhhhHHHHHHHHHH
Confidence 6899999988765543
No 386
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=93.57 E-value=0.11 Score=52.91 Aligned_cols=35 Identities=31% Similarity=0.310 Sum_probs=31.7
Q ss_pred CCCccEEEECCchHHHHHHHHHHHCCCcEEEEecc
Q 008503 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVERE 103 (563)
Q Consensus 69 ~~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~ 103 (563)
.....|+|||+|..|...|..|++.|.+|.++.++
T Consensus 3 ~~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~ 37 (313)
T PRK06249 3 SETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRS 37 (313)
T ss_pred CcCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeC
Confidence 34457999999999999999999999999999886
No 387
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=93.34 E-value=0.13 Score=51.87 Aligned_cols=40 Identities=15% Similarity=0.317 Sum_probs=36.0
Q ss_pred CCCccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCC
Q 008503 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSG 108 (563)
Q Consensus 69 ~~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g 108 (563)
...|||+|.|-|+.=+..+..|+-.|.+|+.||+++.-++
T Consensus 4 ~~~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG~ 43 (434)
T COG5044 4 ETLYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGS 43 (434)
T ss_pred cccccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccCc
Confidence 4479999999999999999999999999999999985443
No 388
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=93.30 E-value=0.096 Score=53.12 Aligned_cols=32 Identities=28% Similarity=0.400 Sum_probs=30.3
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEeccC
Q 008503 73 DILVIGGGATGCGVALDAATRGLRVGLVERED 104 (563)
Q Consensus 73 DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~ 104 (563)
+|.|||+|..|.+.|..|+++|++|+++|+..
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~ 35 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADP 35 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCCeeEEEeCCH
Confidence 69999999999999999999999999999873
No 389
>TIGR02000 NifU_proper Fe-S cluster assembly protein NifU. Three different but partially homologous Fe-S cluster assembly systems have been described: Isc, Suf, and Nif. The latter is associated with donation of an Fe-S cluster to nitrogenase in a number of nitrogen-fixing species. NifU, described here, consists of an N-terminal domain (pfam01592) and a C-terminal domain (pfam01106). Homologs with an equivalent domain archictecture from Helicobacter and Campylobacter, however, are excluded from this model by a high trusted cutoff. The model, therefore, is specific for NifU involved in nitrogenase maturation. The related model TIGR01999 homologous to the N-terminus of this model describes IscU from the Isc system as in E. coli, Saccharomyces cerevisiae, and Homo sapiens.
Probab=93.21 E-value=0.054 Score=53.98 Aligned_cols=50 Identities=8% Similarity=-0.037 Sum_probs=42.0
Q ss_pred cCCCccHHHHHHHHHhcCCCChhHHHHhhcccccCChHHHhhhHHHHHHHHHHHc
Q 008503 474 HGYPFLEAEVAYCARNEYCESAVDFVARRCRLAFLDTDAAGRALPRIIEIMATEH 528 (563)
Q Consensus 474 ~c~~v~~~ei~~ai~~e~~~~~~D~l~rRtr~g~g~~~~g~~~~~~v~~~la~~l 528 (563)
.|..||.++|+.||+. .+++..+.|+.+|++|-+ |.+ |.+.+.++|.+.+
T Consensus 138 ~C~~Vt~~~I~~ai~~-~g~~t~~el~~~t~agt~--CG~--C~~~~~~il~~~~ 187 (290)
T TIGR02000 138 KCFGVDENMVRRAVIE-NDLTTLEEVTNYTKAGGG--CGS--CHEKIEDVLKEVL 187 (290)
T ss_pred ecCCCcHHHHHHHHHH-cCCCcHHHHHhhccCCCC--Ccc--hHHHHHHHHHHHH
Confidence 4999999999999973 356777889999999986 754 9999999987653
No 390
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.18 E-value=0.12 Score=51.90 Aligned_cols=32 Identities=31% Similarity=0.505 Sum_probs=30.5
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEeccC
Q 008503 73 DILVIGGGATGCGVALDAATRGLRVGLVERED 104 (563)
Q Consensus 73 DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~ 104 (563)
.|.|||+|..|...|..++..|++|+++|..+
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 38 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCARAGVDVLVFETTE 38 (286)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEECCH
Confidence 69999999999999999999999999999984
No 391
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.17 E-value=0.11 Score=56.36 Aligned_cols=33 Identities=33% Similarity=0.459 Sum_probs=30.7
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEeccC
Q 008503 72 LDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (563)
Q Consensus 72 ~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~ 104 (563)
..|+|||+|.+|+++|..|+++|++|+++|+.+
T Consensus 17 ~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 17 LRVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 479999999999999999999999999999764
No 392
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.10 E-value=0.097 Score=53.30 Aligned_cols=40 Identities=23% Similarity=0.409 Sum_probs=36.0
Q ss_pred CCCccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCC
Q 008503 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSG 108 (563)
Q Consensus 69 ~~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g 108 (563)
..+|||||||-|..=...|.+.++.|.+|+-+|.+.+-+|
T Consensus 6 P~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg 45 (547)
T KOG4405|consen 6 PEEFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGG 45 (547)
T ss_pred chhccEEEEcCCCcHHHHHHHhhhcCCceEeccCccccCC
Confidence 4579999999999999999999999999999999985444
No 393
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=93.08 E-value=0.1 Score=48.52 Aligned_cols=32 Identities=34% Similarity=0.388 Sum_probs=26.5
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEeccC
Q 008503 73 DILVIGGGATGCGVALDAATRGLRVGLVERED 104 (563)
Q Consensus 73 DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~ 104 (563)
.|.|||.|.+|+.+|..+|+.|++|+.+|.+.
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~ 33 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDE 33 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTSEEEEE-S-H
T ss_pred EEEEECCCcchHHHHHHHHhCCCEEEEEeCCh
Confidence 58999999999999999999999999999873
No 394
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.06 E-value=0.11 Score=52.71 Aligned_cols=32 Identities=28% Similarity=0.381 Sum_probs=30.2
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEeccC
Q 008503 73 DILVIGGGATGCGVALDAATRGLRVGLVERED 104 (563)
Q Consensus 73 DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~ 104 (563)
.|.|||+|..|...|..++..|++|+++|..+
T Consensus 9 ~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~ 40 (321)
T PRK07066 9 TFAAIGSGVIGSGWVARALAHGLDVVAWDPAP 40 (321)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 59999999999999999999999999999874
No 395
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=92.95 E-value=0.33 Score=50.74 Aligned_cols=103 Identities=17% Similarity=0.187 Sum_probs=64.1
Q ss_pred CccEEEECCchHHHHHHHHHHHCCC--cEEEEeccC-CCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhh
Q 008503 71 PLDILVIGGGATGCGVALDAATRGL--RVGLVERED-FSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERK 147 (563)
Q Consensus 71 ~~DVvIIGaGiaG~~~A~~la~~G~--~V~llEk~~-~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~ 147 (563)
...++|||+|+.|..|+..+-+.|. +.+|+-+.. +......-+.-+.+-
T Consensus 74 ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~pydr~~Ls~~~~~~---------------------------- 125 (478)
T KOG1336|consen 74 ARHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLLPYDRARLSKFLLTV---------------------------- 125 (478)
T ss_pred cceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccCcccchhcccceeec----------------------------
Confidence 4579999999999999999988875 566665443 111110000000000
Q ss_pred hcccCCcceEEEecCceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEc
Q 008503 148 QAKDRSLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNA 227 (563)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~A 227 (563)
...+....-+.-++.|+++++++.|+.+..... .+ .. .+| ..+..+.+|+|
T Consensus 126 -------------------~~~~a~r~~e~Yke~gIe~~~~t~v~~~D~~~K--~l---~~---~~G--e~~kys~LilA 176 (478)
T KOG1336|consen 126 -------------------GEGLAKRTPEFYKEKGIELILGTSVVKADLASK--TL---VL---GNG--ETLKYSKLIIA 176 (478)
T ss_pred -------------------cccccccChhhHhhcCceEEEcceeEEeecccc--EE---Ee---CCC--ceeecceEEEe
Confidence 000111112234578999999999999987652 33 22 345 47899999999
Q ss_pred cCc
Q 008503 228 AGP 230 (563)
Q Consensus 228 tG~ 230 (563)
||.
T Consensus 177 TGs 179 (478)
T KOG1336|consen 177 TGS 179 (478)
T ss_pred ecC
Confidence 998
No 396
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.37 E-value=0.14 Score=54.97 Aligned_cols=32 Identities=31% Similarity=0.351 Sum_probs=30.1
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEeccC
Q 008503 73 DILVIGGGATGCGVALDAATRGLRVGLVERED 104 (563)
Q Consensus 73 DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~ 104 (563)
.|+|||.|.+|+++|+.|.++|++|.+.|+..
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~ 33 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRND 33 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCC
Confidence 48999999999999999999999999999874
No 397
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=92.35 E-value=0.28 Score=46.23 Aligned_cols=35 Identities=26% Similarity=0.430 Sum_probs=31.8
Q ss_pred CccEEEECCchHHHHHHHHHHHCCC-cEEEEeccCC
Q 008503 71 PLDILVIGGGATGCGVALDAATRGL-RVGLVEREDF 105 (563)
Q Consensus 71 ~~DVvIIGaGiaG~~~A~~la~~G~-~V~llEk~~~ 105 (563)
...|+|||+|..|..+|..|++.|. +++|+|...+
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~v 56 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFDVV 56 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEE
Confidence 5689999999999999999999999 6999999843
No 398
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=92.32 E-value=1.1 Score=46.24 Aligned_cols=49 Identities=20% Similarity=0.187 Sum_probs=39.9
Q ss_pred CCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccCcC
Q 008503 181 AGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPF 231 (563)
Q Consensus 181 ~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~~ 231 (563)
..+.++.+++|..++..++ |+ .-+.++...+++..++..|.||+|||-.
T Consensus 291 ~~v~l~~~~ev~~~~~~G~-g~-~~l~~~~~~~~~~~t~~~D~vIlATGY~ 339 (436)
T COG3486 291 PDVRLLSLSEVQSVEPAGD-GR-YRLTLRHHETGELETVETDAVILATGYR 339 (436)
T ss_pred CCeeeccccceeeeecCCC-ce-EEEEEeeccCCCceEEEeeEEEEecccc
Confidence 4689999999999998875 55 3566666567888899999999999964
No 399
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.27 E-value=0.18 Score=50.63 Aligned_cols=31 Identities=26% Similarity=0.510 Sum_probs=29.7
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEecc
Q 008503 73 DILVIGGGATGCGVALDAATRGLRVGLVERE 103 (563)
Q Consensus 73 DVvIIGaGiaG~~~A~~la~~G~~V~llEk~ 103 (563)
.|.|||+|..|..+|..+++.|++|.++|.+
T Consensus 5 kIaViGaG~mG~~iA~~la~~G~~V~l~d~~ 35 (287)
T PRK08293 5 NVTVAGAGVLGSQIAFQTAFHGFDVTIYDIS 35 (287)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCeEEEEeCC
Confidence 5999999999999999999999999999986
No 400
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=92.23 E-value=0.66 Score=47.60 Aligned_cols=57 Identities=21% Similarity=0.118 Sum_probs=42.2
Q ss_pred chHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccCc
Q 008503 166 NDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGP 230 (563)
Q Consensus 166 ~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~ 230 (563)
-|..+..+..+..++.|+.++.+..|.++.+.. +.+ -+.+ .+| .+++.|+||+|+|.
T Consensus 391 LPeyls~wt~ekir~~GV~V~pna~v~sv~~~~--~nl-~lkL---~dG--~~l~tD~vVvavG~ 447 (659)
T KOG1346|consen 391 LPEYLSQWTIEKIRKGGVDVRPNAKVESVRKCC--KNL-VLKL---SDG--SELRTDLVVVAVGE 447 (659)
T ss_pred hHHHHHHHHHHHHHhcCceeccchhhhhhhhhc--cce-EEEe---cCC--CeeeeeeEEEEecC
Confidence 345556677788888999999999999887765 233 1333 345 47999999999995
No 401
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.17 E-value=0.18 Score=50.52 Aligned_cols=32 Identities=31% Similarity=0.595 Sum_probs=30.1
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEeccC
Q 008503 73 DILVIGGGATGCGVALDAATRGLRVGLVERED 104 (563)
Q Consensus 73 DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~ 104 (563)
.|.|||+|..|...|..|++.|++|+++|+++
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~ 34 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQ 34 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCCcEEEEeCCH
Confidence 48999999999999999999999999999873
No 402
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=92.17 E-value=0.2 Score=50.70 Aligned_cols=32 Identities=31% Similarity=0.449 Sum_probs=30.2
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEecc
Q 008503 72 LDILVIGGGATGCGVALDAATRGLRVGLVERE 103 (563)
Q Consensus 72 ~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~ 103 (563)
..|+|||+|..|...|..|++.|.+|+++.|.
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~ 34 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRD 34 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEec
Confidence 46999999999999999999999999999986
No 403
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.11 E-value=0.21 Score=53.60 Aligned_cols=34 Identities=26% Similarity=0.425 Sum_probs=31.4
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEeccC
Q 008503 71 PLDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (563)
Q Consensus 71 ~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~ 104 (563)
...|+|||+|.+|+.+|..|+++|++|+++|+..
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 4579999999999999999999999999999874
No 404
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=91.76 E-value=0.22 Score=53.11 Aligned_cols=97 Identities=24% Similarity=0.291 Sum_probs=73.8
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhhhccc
Q 008503 72 LDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQAKD 151 (563)
Q Consensus 72 ~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 151 (563)
-.++|||||++|+-.|..+++.|.+|+|||+.+.--.
T Consensus 174 ~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp------------------------------------------- 210 (454)
T COG1249 174 KSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILP------------------------------------------- 210 (454)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCC-------------------------------------------
Confidence 4699999999999999999999999999999862100
Q ss_pred CCcceEEEecCceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccCc
Q 008503 152 RSLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGP 230 (563)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~ 230 (563)
..+.++...+.+.+++.|++++++++|+.++..++ . ..+.+. ++...++.++.|++|+|-
T Consensus 211 -------------~~D~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~--~-v~v~~~---~g~~~~~~ad~vLvAiGR 270 (454)
T COG1249 211 -------------GEDPEISKELTKQLEKGGVKILLNTKVTAVEKKDD--G-VLVTLE---DGEGGTIEADAVLVAIGR 270 (454)
T ss_pred -------------cCCHHHHHHHHHHHHhCCeEEEccceEEEEEecCC--e-EEEEEe---cCCCCEEEeeEEEEccCC
Confidence 01234445667777778899999999999988753 2 345553 333337899999999995
No 405
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=91.64 E-value=0.22 Score=53.68 Aligned_cols=100 Identities=22% Similarity=0.221 Sum_probs=71.6
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhhhccc
Q 008503 72 LDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQAKD 151 (563)
Q Consensus 72 ~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 151 (563)
-+|+|||+|.+|+-+|..|++.|.+|+|+++.+.... .
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~-----------~------------------------------- 204 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLP-----------R------------------------------- 204 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCC-----------c-------------------------------
Confidence 5899999999999999999999999999999752110 0
Q ss_pred CCcceEEEecCceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccCcC
Q 008503 152 RSLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPF 231 (563)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~~ 231 (563)
. +..+...+.+.+++.|++++++++|+++..++ + ...+.+.+ ++...++.+|.||+|+|.-
T Consensus 205 -------------~-d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~--~-~~~v~~~~--~~~~~~i~~D~ViiA~G~~ 265 (463)
T TIGR02053 205 -------------E-EPEISAAVEEALAEEGIEVVTSAQVKAVSVRG--G-GKIITVEK--PGGQGEVEADELLVATGRR 265 (463)
T ss_pred -------------c-CHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcC--C-EEEEEEEe--CCCceEEEeCEEEEeECCC
Confidence 0 01122344556677899999999999998754 2 22344432 2223579999999999964
Q ss_pred h
Q 008503 232 C 232 (563)
Q Consensus 232 s 232 (563)
.
T Consensus 266 p 266 (463)
T TIGR02053 266 P 266 (463)
T ss_pred c
Confidence 3
No 406
>KOG2403 consensus Succinate dehydrogenase, flavoprotein subunit [Energy production and conversion]
Probab=91.48 E-value=0.29 Score=51.92 Aligned_cols=34 Identities=24% Similarity=0.427 Sum_probs=32.0
Q ss_pred CCccEEEECCchHHHHHHHHHHHCCCcEEEEecc
Q 008503 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVERE 103 (563)
Q Consensus 70 ~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~ 103 (563)
..||-+|||+|-+|+-+|..+++.|++|+++-+-
T Consensus 54 ~~~da~vvgaggAGlr~~~~lae~g~~~a~itkl 87 (642)
T KOG2403|consen 54 HTYDAVVVGAGGAGLRAARGLAELGEKTAVITKL 87 (642)
T ss_pred eeceeEEEeccchhhhhhhhhhhcCceEEEEecc
Confidence 3499999999999999999999999999999886
No 407
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=91.42 E-value=1.3 Score=46.26 Aligned_cols=46 Identities=20% Similarity=0.132 Sum_probs=33.9
Q ss_pred HHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccCcChhhh
Q 008503 179 ALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSV 235 (563)
Q Consensus 179 ~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~~s~~l 235 (563)
.+.++.++.+++|+.+..... . |.+ .++ ++..|.+|+|+|......
T Consensus 64 ~~~~i~~~~~~~v~~id~~~~--~---v~~---~~g---~~~yd~LvlatGa~~~~~ 109 (415)
T COG0446 64 RATGIDVRTGTEVTSIDPENK--V---VLL---DDG---EIEYDYLVLATGARPRPP 109 (415)
T ss_pred HhhCCEEeeCCEEEEecCCCC--E---EEE---CCC---cccccEEEEcCCCcccCC
Confidence 467899999999999977642 2 222 223 788999999999876543
No 408
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=91.37 E-value=0.3 Score=44.70 Aligned_cols=33 Identities=30% Similarity=0.430 Sum_probs=29.4
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEecc
Q 008503 71 PLDILVIGGGATGCGVALDAATRGLRVGLVERE 103 (563)
Q Consensus 71 ~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~ 103 (563)
...|+|+|+|.+|..+|..|...|++|+++|..
T Consensus 20 p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~ 52 (168)
T PF01262_consen 20 PAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDER 52 (168)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESS
T ss_pred CeEEEEECCCHHHHHHHHHHhHCCCEEEeccCC
Confidence 357999999999999999999999999999986
No 409
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=91.36 E-value=0.27 Score=46.58 Aligned_cols=33 Identities=24% Similarity=0.357 Sum_probs=30.4
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEecc
Q 008503 71 PLDILVIGGGATGCGVALDAATRGLRVGLVERE 103 (563)
Q Consensus 71 ~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~ 103 (563)
.-.|+|||||.+|..-+..|.+.|.+|+|++..
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~ 41 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKAGAQLRVIAEE 41 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 347999999999999999999999999999875
No 410
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=91.33 E-value=0.25 Score=49.58 Aligned_cols=32 Identities=34% Similarity=0.482 Sum_probs=30.1
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEeccC
Q 008503 73 DILVIGGGATGCGVALDAATRGLRVGLVERED 104 (563)
Q Consensus 73 DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~ 104 (563)
.|.|||+|..|..+|..++..|++|+++|+++
T Consensus 5 ~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (291)
T PRK06035 5 VIGVVGSGVMGQGIAQVFARTGYDVTIVDVSE 36 (291)
T ss_pred EEEEECccHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 59999999999999999999999999999873
No 411
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.28 E-value=0.26 Score=49.49 Aligned_cols=31 Identities=35% Similarity=0.438 Sum_probs=29.8
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEecc
Q 008503 73 DILVIGGGATGCGVALDAATRGLRVGLVERE 103 (563)
Q Consensus 73 DVvIIGaGiaG~~~A~~la~~G~~V~llEk~ 103 (563)
.|.|||+|..|..+|..+++.|++|+++|++
T Consensus 6 kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~ 36 (292)
T PRK07530 6 KVGVIGAGQMGNGIAHVCALAGYDVLLNDVS 36 (292)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCeEEEEeCC
Confidence 5999999999999999999999999999987
No 412
>PRK06370 mercuric reductase; Validated
Probab=91.04 E-value=0.26 Score=53.00 Aligned_cols=101 Identities=22% Similarity=0.247 Sum_probs=72.2
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEeccCCCCCCccCCCCccccchhhHHHHhhccCcccHHHHHHHHHHhhhcc
Q 008503 71 PLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQAK 150 (563)
Q Consensus 71 ~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~~~~g~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 150 (563)
.-+|+|||+|.+|+-+|..+++.|.+|+|+++.+.....
T Consensus 171 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~----------------------------------------- 209 (463)
T PRK06370 171 PEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPR----------------------------------------- 209 (463)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCcc-----------------------------------------
Confidence 358999999999999999999999999999997521100
Q ss_pred cCCcceEEEecCceechHHHHHHHHHHHHHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEEeCeEEEccCc
Q 008503 151 DRSLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGP 230 (563)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~A~~VI~AtG~ 230 (563)
.+..+...+.+.+.+.|++++++++|.++..+++ .+ .+.+.. ++...++.+|.||+|+|.
T Consensus 210 ---------------~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~--~~-~v~~~~--~~~~~~i~~D~Vi~A~G~ 269 (463)
T PRK06370 210 ---------------EDEDVAAAVREILEREGIDVRLNAECIRVERDGD--GI-AVGLDC--NGGAPEITGSHILVAVGR 269 (463)
T ss_pred ---------------cCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCC--EE-EEEEEe--CCCceEEEeCEEEECcCC
Confidence 0011223455566789999999999999987642 22 333332 222357999999999996
Q ss_pred Ch
Q 008503 231 FC 232 (563)
Q Consensus 231 ~s 232 (563)
-.
T Consensus 270 ~p 271 (463)
T PRK06370 270 VP 271 (463)
T ss_pred Cc
Confidence 43
No 413
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=91.03 E-value=0.32 Score=43.94 Aligned_cols=34 Identities=26% Similarity=0.341 Sum_probs=30.2
Q ss_pred CCccEEEECCchHHHHHHHHHHHCCCcEEEEecc
Q 008503 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVERE 103 (563)
Q Consensus 70 ~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~ 103 (563)
....|+|||||-+|..-|..|.+.|.+|+||...
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~ 45 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPE 45 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCc
Confidence 3457999999999999999999999999999543
No 414
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=90.83 E-value=0.21 Score=49.34 Aligned_cols=34 Identities=29% Similarity=0.488 Sum_probs=31.8
Q ss_pred CCccEEEECCchHHHHHHHHHHHCCCcEEEEecc
Q 008503 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVERE 103 (563)
Q Consensus 70 ~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~ 103 (563)
..-+|+|||||++|.-+|.-+...|.+|+++|.+
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n 200 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLN 200 (371)
T ss_pred CCccEEEECCccccchHHHHHhccCCeeEEEecC
Confidence 3468999999999999999999999999999998
No 415
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=90.71 E-value=0.21 Score=41.62 Aligned_cols=34 Identities=26% Similarity=0.394 Sum_probs=30.9
Q ss_pred CCccEEEECCchHHHHHHHHHHHCCCcEEEEecc
Q 008503 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVERE 103 (563)
Q Consensus 70 ~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~ 103 (563)
+...|+|||||..|..-+..|.+.|.+|+|+.+.
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence 4568999999999999999999999999999887
No 416
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=90.71 E-value=0.26 Score=46.26 Aligned_cols=35 Identities=31% Similarity=0.513 Sum_probs=29.4
Q ss_pred CCccEEEECCchHHHHHHHHHHHCCCcEEEEeccC
Q 008503 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (563)
Q Consensus 70 ~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~ 104 (563)
..-.|+|||+|.++.-+|..|++.|.+|.++-|.+
T Consensus 166 ~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~ 200 (203)
T PF13738_consen 166 KGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSP 200 (203)
T ss_dssp TTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS-
T ss_pred CCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCC
Confidence 34689999999999999999999999999998875
No 417
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=90.70 E-value=1.6 Score=41.76 Aligned_cols=38 Identities=24% Similarity=0.410 Sum_probs=33.9
Q ss_pred CccEEEECCchHHHHHHHHHHHCCC-cEEEEeccCCCCC
Q 008503 71 PLDILVIGGGATGCGVALDAATRGL-RVGLVEREDFSSG 108 (563)
Q Consensus 71 ~~DVvIIGaGiaG~~~A~~la~~G~-~V~llEk~~~~~g 108 (563)
+..|+|||.|-+|..++-.|++.|. +.+|||..++.-.
T Consensus 30 ~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vT 68 (263)
T COG1179 30 QAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVT 68 (263)
T ss_pred hCcEEEEecCchhHHHHHHHHHcCCCeEEEEeccccccc
Confidence 4679999999999999999999997 7999999987543
No 418
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=90.70 E-value=0.23 Score=46.62 Aligned_cols=33 Identities=39% Similarity=0.666 Sum_probs=31.0
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEeccC
Q 008503 72 LDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (563)
Q Consensus 72 ~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~ 104 (563)
..|.|||+|..|..+|.-++..|+.|.|+|++.
T Consensus 12 ~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~ 44 (298)
T KOG2304|consen 12 KNVAIVGAGQMGSGIAQVAATSGLNVWLVDANE 44 (298)
T ss_pred cceEEEcccccchhHHHHHHhcCCceEEecCCH
Confidence 479999999999999999999999999999973
No 419
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=90.54 E-value=0.32 Score=49.03 Aligned_cols=30 Identities=30% Similarity=0.384 Sum_probs=28.7
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEec
Q 008503 73 DILVIGGGATGCGVALDAATRGLRVGLVER 102 (563)
Q Consensus 73 DVvIIGaGiaG~~~A~~la~~G~~V~llEk 102 (563)
.|+|||+|..|...|..|++.|.+|.++++
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 489999999999999999999999999987
No 420
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.52 E-value=0.33 Score=48.44 Aligned_cols=32 Identities=41% Similarity=0.560 Sum_probs=30.1
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEeccC
Q 008503 73 DILVIGGGATGCGVALDAATRGLRVGLVERED 104 (563)
Q Consensus 73 DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~ 104 (563)
.|.|||+|..|...|..+++.|++|+++|.++
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~ 36 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGYDVVMVDISD 36 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCCceEEEeCCH
Confidence 59999999999999999999999999999873
No 421
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=90.52 E-value=1.7 Score=48.10 Aligned_cols=55 Identities=15% Similarity=-0.020 Sum_probs=42.9
Q ss_pred CCccccCCCccHHHHHHHHHhcCCCChhHHHHhhcccccCChHHHhhhHHHHHHHHHHHc
Q 008503 469 GKRLAHGYPFLEAEVAYCARNEYCESAVDFVARRCRLAFLDTDAAGRALPRIIEIMATEH 528 (563)
Q Consensus 469 ~~~~~~c~~v~~~ei~~ai~~e~~~~~~D~l~rRtr~g~g~~~~g~~~~~~v~~~la~~l 528 (563)
-..++.|.++++.||+..|+.. ..+....|....+.++| |. .|.|.+.-.++--+
T Consensus 472 ~~~~c~~~~~~~~~~~~~i~~~-~~~~~~~v~~~~~~~~g--c~--~c~pa~~~~l~~~~ 526 (793)
T COG1251 472 NNAICGCTDLSRDEVVHLIRAK-GLKTFPEVMNVLGWKTG--CA--KCRPAINYYLASCW 526 (793)
T ss_pred ccccccCcCCCHHHHHHHHHHh-ccCCHHHHHHHhcccCC--cc--eechhhccceeeec
Confidence 3467779999999999999965 55566678888888885 64 59999888776543
No 422
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=90.51 E-value=0.49 Score=41.54 Aligned_cols=34 Identities=32% Similarity=0.497 Sum_probs=30.8
Q ss_pred CCccEEEECCchHHHHHHHHHHHCCCc-EEEEecc
Q 008503 70 NPLDILVIGGGATGCGVALDAATRGLR-VGLVERE 103 (563)
Q Consensus 70 ~~~DVvIIGaGiaG~~~A~~la~~G~~-V~llEk~ 103 (563)
....++|||+|-+|-++++.|+..|.+ |.|+.|.
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt 45 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRT 45 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC
Confidence 356899999999999999999999998 9999876
No 423
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=90.43 E-value=0.41 Score=45.21 Aligned_cols=34 Identities=18% Similarity=0.377 Sum_probs=30.7
Q ss_pred CCccEEEECCchHHHHHHHHHHHCCCcEEEEecc
Q 008503 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVERE 103 (563)
Q Consensus 70 ~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~ 103 (563)
....|+|||||-+|...|..|.+.|.+|+|+++.
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 3457999999999999999999999999999764
No 424
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=90.36 E-value=0.2 Score=48.22 Aligned_cols=32 Identities=28% Similarity=0.509 Sum_probs=27.3
Q ss_pred EEEECCchHHHHHHHHHHHC--CCcEEEEeccCC
Q 008503 74 ILVIGGGATGCGVALDAATR--GLRVGLVEREDF 105 (563)
Q Consensus 74 VvIIGaGiaG~~~A~~la~~--G~~V~llEk~~~ 105 (563)
.+||||||+|.++|-.|+.. ..+|+||-..++
T Consensus 2 fivvgggiagvscaeqla~~~psa~illitass~ 35 (334)
T KOG2755|consen 2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASSF 35 (334)
T ss_pred eEEEcCccccccHHHHHHhhCCCCcEEEEeccHH
Confidence 58999999999999999976 678999977643
No 425
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=90.25 E-value=0.48 Score=40.09 Aligned_cols=31 Identities=26% Similarity=0.517 Sum_probs=28.1
Q ss_pred EEEECCchHHHHHHHHHHHCCCcEEEEeccC
Q 008503 74 ILVIGGGATGCGVALDAATRGLRVGLVERED 104 (563)
Q Consensus 74 VvIIGaGiaG~~~A~~la~~G~~V~llEk~~ 104 (563)
|+|||.|..|..++..|.+.+.+|+++|++.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~ 31 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDP 31 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCc
Confidence 7899999999999999999888999999984
No 426
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=90.05 E-value=0.39 Score=48.40 Aligned_cols=31 Identities=35% Similarity=0.472 Sum_probs=29.3
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEecc
Q 008503 73 DILVIGGGATGCGVALDAATRGLRVGLVERE 103 (563)
Q Consensus 73 DVvIIGaGiaG~~~A~~la~~G~~V~llEk~ 103 (563)
.|+|||+|..|...|..|++.|.+|.++++.
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~ 32 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARR 32 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence 4899999999999999999999999999985
No 427
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=89.94 E-value=1.4 Score=46.91 Aligned_cols=47 Identities=19% Similarity=0.217 Sum_probs=32.6
Q ss_pred HHCCCEEEcCcEEEEEEEcCCCCcEEEEEEEECCCCcEEEEE--eCeEEEccCcCh
Q 008503 179 ALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTY--AKVVVNAAGPFC 232 (563)
Q Consensus 179 ~~~G~~i~~~~~v~~l~~~~~~g~v~gv~~~d~~~g~~~~i~--A~~VI~AtG~~s 232 (563)
.+.|++++.+++|+++..++ .. |.+.+..++. .+. +|.||+|||...
T Consensus 55 ~~~gv~~~~~~~V~~id~~~--~~---v~~~~~~~~~--~~~~~yd~lIiATG~~p 103 (427)
T TIGR03385 55 KKRGIDVKTNHEVIEVNDER--QT---VVVRNNKTNE--TYEESYDYLILSPGASP 103 (427)
T ss_pred HhcCCeEEecCEEEEEECCC--CE---EEEEECCCCC--EEecCCCEEEECCCCCC
Confidence 56899999999999997654 22 3443312232 456 999999999843
No 428
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=89.88 E-value=0.41 Score=48.46 Aligned_cols=32 Identities=25% Similarity=0.444 Sum_probs=29.2
Q ss_pred cEEEECCchHHHHHHHHHHHCC--CcEEEEeccC
Q 008503 73 DILVIGGGATGCGVALDAATRG--LRVGLVERED 104 (563)
Q Consensus 73 DVvIIGaGiaG~~~A~~la~~G--~~V~llEk~~ 104 (563)
.|.|||+|.+|.++|+.|+..| ..|+|+|++.
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~ 35 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINK 35 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCc
Confidence 5999999999999999999999 4799999873
No 429
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=89.85 E-value=0.44 Score=49.57 Aligned_cols=33 Identities=33% Similarity=0.533 Sum_probs=30.8
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEecc
Q 008503 71 PLDILVIGGGATGCGVALDAATRGLRVGLVERE 103 (563)
Q Consensus 71 ~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~ 103 (563)
..+|+|||+|.+|..+|..|...|.+|.++|+.
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~ 199 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDIN 199 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCCCeEEEEECC
Confidence 457999999999999999999999999999986
No 430
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=89.72 E-value=0.38 Score=49.42 Aligned_cols=31 Identities=35% Similarity=0.580 Sum_probs=29.5
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEecc
Q 008503 73 DILVIGGGATGCGVALDAATRGLRVGLVERE 103 (563)
Q Consensus 73 DVvIIGaGiaG~~~A~~la~~G~~V~llEk~ 103 (563)
.|.|||+|..|...|..|++.|++|.++++.
T Consensus 4 kI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 4 RICVLGAGSIGCYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCcEEEEecH
Confidence 5999999999999999999999999999875
No 431
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=89.68 E-value=0.43 Score=48.95 Aligned_cols=32 Identities=31% Similarity=0.315 Sum_probs=30.2
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEeccC
Q 008503 73 DILVIGGGATGCGVALDAATRGLRVGLVERED 104 (563)
Q Consensus 73 DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~ 104 (563)
.|.|||.|-+|+..|..+|+.|+.|+++|...
T Consensus 2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid~ 33 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAELGHEVVCVDIDE 33 (414)
T ss_pred ceEEECCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence 58999999999999999999999999999873
No 432
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=89.62 E-value=0.49 Score=48.54 Aligned_cols=35 Identities=31% Similarity=0.505 Sum_probs=32.1
Q ss_pred CccEEEECCchHHHHHHHHHHHCCC-cEEEEeccCC
Q 008503 71 PLDILVIGGGATGCGVALDAATRGL-RVGLVEREDF 105 (563)
Q Consensus 71 ~~DVvIIGaGiaG~~~A~~la~~G~-~V~llEk~~~ 105 (563)
...|+|||+|-.|+.+|..|++.|. +++|+|.+.+
T Consensus 24 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~V 59 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYV 59 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCcc
Confidence 5689999999999999999999999 8999999754
No 433
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=89.55 E-value=0.45 Score=47.89 Aligned_cols=32 Identities=34% Similarity=0.578 Sum_probs=30.0
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEeccC
Q 008503 73 DILVIGGGATGCGVALDAATRGLRVGLVERED 104 (563)
Q Consensus 73 DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~ 104 (563)
.|.|||+|..|..+|..++..|++|.++|++.
T Consensus 6 ~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 37 (295)
T PLN02545 6 KVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDP 37 (295)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 49999999999999999999999999999873
No 434
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=89.53 E-value=0.56 Score=42.86 Aligned_cols=34 Identities=18% Similarity=0.219 Sum_probs=30.5
Q ss_pred CCccEEEECCch-HHHHHHHHHHHCCCcEEEEecc
Q 008503 70 NPLDILVIGGGA-TGCGVALDAATRGLRVGLVERE 103 (563)
Q Consensus 70 ~~~DVvIIGaGi-aG~~~A~~la~~G~~V~llEk~ 103 (563)
....|+|||+|- +|..+|..|.++|.+|.++.+.
T Consensus 43 ~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 43 AGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence 457899999995 6999999999999999999975
No 435
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=89.50 E-value=0.45 Score=48.10 Aligned_cols=31 Identities=32% Similarity=0.443 Sum_probs=28.7
Q ss_pred cEEEECCchHHHHHHHHHHHCCC-cEEEEecc
Q 008503 73 DILVIGGGATGCGVALDAATRGL-RVGLVERE 103 (563)
Q Consensus 73 DVvIIGaGiaG~~~A~~la~~G~-~V~llEk~ 103 (563)
.|.|||+|..|..+|+.++.+|+ +|+++|..
T Consensus 3 KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~ 34 (305)
T TIGR01763 3 KISVIGAGFVGATTAFRLAEKELADLVLLDVV 34 (305)
T ss_pred EEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 58999999999999999999887 89999984
No 436
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=89.36 E-value=0.48 Score=41.48 Aligned_cols=35 Identities=31% Similarity=0.579 Sum_probs=30.6
Q ss_pred ccEEEECCchHHHHHHHHHHHCCC-cEEEEeccCCC
Q 008503 72 LDILVIGGGATGCGVALDAATRGL-RVGLVEREDFS 106 (563)
Q Consensus 72 ~DVvIIGaGiaG~~~A~~la~~G~-~V~llEk~~~~ 106 (563)
..|+|||+|-.|+.+|..|++.|. +++|+|...+.
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~ 38 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVE 38 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-
T ss_pred CEEEEECcCHHHHHHHHHHHHhCCCceeecCCccee
Confidence 469999999999999999999998 69999998553
No 437
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=89.30 E-value=0.8 Score=45.17 Aligned_cols=37 Identities=27% Similarity=0.349 Sum_probs=32.7
Q ss_pred CCccEEEECCchHHHHHHHHHHHCC-CcEEEEeccCCC
Q 008503 70 NPLDILVIGGGATGCGVALDAATRG-LRVGLVEREDFS 106 (563)
Q Consensus 70 ~~~DVvIIGaGiaG~~~A~~la~~G-~~V~llEk~~~~ 106 (563)
....|+|||+|-+|+.+|..|++.| -+++|+|...+.
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~ 66 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVC 66 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEec
Confidence 3568999999999999999999999 589999988543
No 438
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=89.26 E-value=0.56 Score=43.15 Aligned_cols=32 Identities=25% Similarity=0.418 Sum_probs=29.5
Q ss_pred EEEECCchHHHHHHHHHHHCCCc-EEEEeccCC
Q 008503 74 ILVIGGGATGCGVALDAATRGLR-VGLVEREDF 105 (563)
Q Consensus 74 VvIIGaGiaG~~~A~~la~~G~~-V~llEk~~~ 105 (563)
|+|||+|..|..+|..|++.|.. ++++|.+.+
T Consensus 2 VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v 34 (174)
T cd01487 2 VGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVV 34 (174)
T ss_pred EEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEE
Confidence 89999999999999999999995 999999854
No 439
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=89.26 E-value=0.41 Score=54.33 Aligned_cols=32 Identities=28% Similarity=0.546 Sum_probs=30.3
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEeccC
Q 008503 73 DILVIGGGATGCGVALDAATRGLRVGLVERED 104 (563)
Q Consensus 73 DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~ 104 (563)
.|.|||+|..|..+|..++..|++|+|+|..+
T Consensus 315 ~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~ 346 (715)
T PRK11730 315 QAAVLGAGIMGGGIAYQSASKGVPVIMKDINQ 346 (715)
T ss_pred eEEEECCchhHHHHHHHHHhCCCeEEEEeCCH
Confidence 59999999999999999999999999999873
No 440
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=89.09 E-value=0.47 Score=51.43 Aligned_cols=32 Identities=41% Similarity=0.560 Sum_probs=30.3
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEeccC
Q 008503 73 DILVIGGGATGCGVALDAATRGLRVGLVERED 104 (563)
Q Consensus 73 DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~ 104 (563)
.|.|||+|..|..+|..+++.|++|+++|+..
T Consensus 7 kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~ 38 (503)
T TIGR02279 7 TVAVIGAGAMGAGIAQVAASAGHQVLLYDIRA 38 (503)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 59999999999999999999999999999873
No 441
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=89.01 E-value=0.44 Score=53.99 Aligned_cols=32 Identities=25% Similarity=0.523 Sum_probs=30.3
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEeccC
Q 008503 73 DILVIGGGATGCGVALDAATRGLRVGLVERED 104 (563)
Q Consensus 73 DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~ 104 (563)
.|.|||+|..|..+|..++..|+.|+|+|.+.
T Consensus 315 ~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~ 346 (714)
T TIGR02437 315 QAAVLGAGIMGGGIAYQSASKGTPIVMKDINQ 346 (714)
T ss_pred eEEEECCchHHHHHHHHHHhCCCeEEEEeCCH
Confidence 49999999999999999999999999999973
No 442
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=88.95 E-value=0.51 Score=49.52 Aligned_cols=33 Identities=30% Similarity=0.327 Sum_probs=30.5
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEeccC
Q 008503 72 LDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (563)
Q Consensus 72 ~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~ 104 (563)
-.|+|+|+|..|..+|..|...|.+|+++|..+
T Consensus 203 ktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~ 235 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDP 235 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence 479999999999999999999999999998874
No 443
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=88.88 E-value=0.72 Score=40.80 Aligned_cols=33 Identities=27% Similarity=0.618 Sum_probs=30.1
Q ss_pred EEEECCchHHHHHHHHHHHCCC-cEEEEeccCCC
Q 008503 74 ILVIGGGATGCGVALDAATRGL-RVGLVEREDFS 106 (563)
Q Consensus 74 VvIIGaGiaG~~~A~~la~~G~-~V~llEk~~~~ 106 (563)
|+|||+|-.|+.+|..|++.|. +++++|.+.+.
T Consensus 2 VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~ 35 (143)
T cd01483 2 VLLVGLGGLGSEIALNLARSGVGKITLIDFDTVE 35 (143)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcC
Confidence 8999999999999999999998 69999988543
No 444
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.82 E-value=0.54 Score=47.64 Aligned_cols=31 Identities=35% Similarity=0.633 Sum_probs=29.6
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEecc
Q 008503 73 DILVIGGGATGCGVALDAATRGLRVGLVERE 103 (563)
Q Consensus 73 DVvIIGaGiaG~~~A~~la~~G~~V~llEk~ 103 (563)
.|.|||+|..|.+.|..|++.|++|+++|++
T Consensus 6 ~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~ 36 (311)
T PRK06130 6 NLAIIGAGTMGSGIAALFARKGLQVVLIDVM 36 (311)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence 5999999999999999999999999999986
No 445
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=88.78 E-value=0.58 Score=47.97 Aligned_cols=35 Identities=23% Similarity=0.494 Sum_probs=31.8
Q ss_pred CccEEEECCchHHHHHHHHHHHCCC-cEEEEeccCC
Q 008503 71 PLDILVIGGGATGCGVALDAATRGL-RVGLVEREDF 105 (563)
Q Consensus 71 ~~DVvIIGaGiaG~~~A~~la~~G~-~V~llEk~~~ 105 (563)
...|+|||+|-.|..+|..|++.|. +++|+|.+.+
T Consensus 24 ~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~v 59 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYV 59 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcc
Confidence 4579999999999999999999998 8999999854
No 446
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=88.70 E-value=0.54 Score=48.69 Aligned_cols=32 Identities=41% Similarity=0.601 Sum_probs=30.4
Q ss_pred ccEEEECCchHHHHHHHHHHHCC-CcEEEEecc
Q 008503 72 LDILVIGGGATGCGVALDAATRG-LRVGLVERE 103 (563)
Q Consensus 72 ~DVvIIGaGiaG~~~A~~la~~G-~~V~llEk~ 103 (563)
.+|+|||+|-+|..+|..|+++| .+|++.+|.
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs 34 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRS 34 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCC
Confidence 37999999999999999999999 999999998
No 447
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=88.65 E-value=0.49 Score=47.43 Aligned_cols=31 Identities=35% Similarity=0.490 Sum_probs=29.5
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEecc
Q 008503 73 DILVIGGGATGCGVALDAATRGLRVGLVERE 103 (563)
Q Consensus 73 DVvIIGaGiaG~~~A~~la~~G~~V~llEk~ 103 (563)
.|.|||||..|..+|..++..|++|++.|.+
T Consensus 5 kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~ 35 (307)
T COG1250 5 KVAVIGAGVMGAGIAAVFALAGYDVVLKDIS 35 (307)
T ss_pred EEEEEcccchhHHHHHHHhhcCCceEEEeCC
Confidence 5899999999999999999988999999998
No 448
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=88.58 E-value=0.61 Score=50.69 Aligned_cols=32 Identities=41% Similarity=0.546 Sum_probs=30.3
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEeccC
Q 008503 73 DILVIGGGATGCGVALDAATRGLRVGLVERED 104 (563)
Q Consensus 73 DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~ 104 (563)
.|.|||+|..|..+|..++..|+.|+++|+..
T Consensus 9 ~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~ 40 (507)
T PRK08268 9 TVAVIGAGAMGAGIAQVAAQAGHTVLLYDARA 40 (507)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 59999999999999999999999999999874
No 449
>PRK04148 hypothetical protein; Provisional
Probab=88.53 E-value=0.46 Score=41.45 Aligned_cols=32 Identities=22% Similarity=0.252 Sum_probs=29.6
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEeccC
Q 008503 72 LDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (563)
Q Consensus 72 ~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~ 104 (563)
..+++||.| .|...|..|++.|.+|+.+|-++
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~ 49 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINE 49 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCH
Confidence 469999999 99999999999999999999884
No 450
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=88.25 E-value=0.75 Score=43.47 Aligned_cols=36 Identities=28% Similarity=0.460 Sum_probs=32.3
Q ss_pred CCccEEEECCchHHHHHHHHHHHCCC-cEEEEeccCC
Q 008503 70 NPLDILVIGGGATGCGVALDAATRGL-RVGLVEREDF 105 (563)
Q Consensus 70 ~~~DVvIIGaGiaG~~~A~~la~~G~-~V~llEk~~~ 105 (563)
.+..|+|||.|-.|..+|..|++.|. +++|+|...+
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~v 56 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHV 56 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEE
Confidence 35689999999999999999999997 8999999854
No 451
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=88.17 E-value=0.7 Score=46.83 Aligned_cols=35 Identities=34% Similarity=0.478 Sum_probs=31.6
Q ss_pred CCccEEEECCchHHHHHHHHHHHCCCcEEEEeccC
Q 008503 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (563)
Q Consensus 70 ~~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~ 104 (563)
+...|.|||+|..|.+.|..|++.|++|.++++..
T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~ 37 (308)
T PRK14619 3 QPKTIAILGAGAWGSTLAGLASANGHRVRVWSRRS 37 (308)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 34579999999999999999999999999999873
No 452
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=88.15 E-value=0.61 Score=50.30 Aligned_cols=34 Identities=29% Similarity=0.439 Sum_probs=31.2
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEeccC
Q 008503 71 PLDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (563)
Q Consensus 71 ~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~ 104 (563)
.-.|+|||+|++|+.++..+...|.+|.++|.++
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~ 198 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRP 198 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4579999999999999999999999999999873
No 453
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=87.93 E-value=0.55 Score=53.40 Aligned_cols=32 Identities=28% Similarity=0.541 Sum_probs=30.2
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEeccC
Q 008503 73 DILVIGGGATGCGVALDAATRGLRVGLVERED 104 (563)
Q Consensus 73 DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~ 104 (563)
.|.|||+|..|..+|..++..|++|+|+|..+
T Consensus 337 ~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~ 368 (737)
T TIGR02441 337 TLAVLGAGLMGAGIAQVSVDKGLKTVLKDATP 368 (737)
T ss_pred EEEEECCCHhHHHHHHHHHhCCCcEEEecCCH
Confidence 49999999999999999999999999999874
No 454
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=87.90 E-value=0.57 Score=41.16 Aligned_cols=31 Identities=29% Similarity=0.453 Sum_probs=27.4
Q ss_pred EEEECCchHHHHHHHHHHHCCCcEEEEeccC
Q 008503 74 ILVIGGGATGCGVALDAATRGLRVGLVERED 104 (563)
Q Consensus 74 VvIIGaGiaG~~~A~~la~~G~~V~llEk~~ 104 (563)
++|+|+|..+.+++.-+...|++|+|+|...
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~ 31 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRP 31 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-C
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCc
Confidence 5899999999999999999999999999873
No 455
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=87.70 E-value=0.7 Score=47.22 Aligned_cols=31 Identities=26% Similarity=0.550 Sum_probs=29.3
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEecc
Q 008503 73 DILVIGGGATGCGVALDAATRGLRVGLVERE 103 (563)
Q Consensus 73 DVvIIGaGiaG~~~A~~la~~G~~V~llEk~ 103 (563)
.|.|||+|..|.+.|..|++.|.+|.++.++
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~ 32 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRN 32 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecC
Confidence 4899999999999999999999999999885
No 456
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=87.56 E-value=0.89 Score=43.32 Aligned_cols=35 Identities=23% Similarity=0.405 Sum_probs=31.7
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCc-EEEEeccCC
Q 008503 71 PLDILVIGGGATGCGVALDAATRGLR-VGLVEREDF 105 (563)
Q Consensus 71 ~~DVvIIGaGiaG~~~A~~la~~G~~-V~llEk~~~ 105 (563)
...|+|||+|-.|+.+|..|++.|.. ++++|.+.+
T Consensus 28 ~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~v 63 (212)
T PRK08644 28 KAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVV 63 (212)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEe
Confidence 56899999999999999999999985 999999854
No 457
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=87.43 E-value=0.83 Score=44.00 Aligned_cols=33 Identities=24% Similarity=0.455 Sum_probs=30.0
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCc---EEEEeccC
Q 008503 72 LDILVIGGGATGCGVALDAATRGLR---VGLVERED 104 (563)
Q Consensus 72 ~DVvIIGaGiaG~~~A~~la~~G~~---V~llEk~~ 104 (563)
..|+|+|+|-+|..+|..|.+.|.+ +.++++..
T Consensus 26 ~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g 61 (226)
T cd05311 26 VKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG 61 (226)
T ss_pred CEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence 4699999999999999999999985 99999973
No 458
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=87.10 E-value=0.87 Score=42.95 Aligned_cols=32 Identities=19% Similarity=0.240 Sum_probs=29.7
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEecc
Q 008503 72 LDILVIGGGATGCGVALDAATRGLRVGLVERE 103 (563)
Q Consensus 72 ~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~ 103 (563)
..|+|+|.|-.|..+|..|.+.|++|++.|.+
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~ 60 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLEEGAKLIVADIN 60 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 46999999999999999999999999998865
No 459
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=86.98 E-value=0.7 Score=46.62 Aligned_cols=30 Identities=33% Similarity=0.410 Sum_probs=28.0
Q ss_pred EEEECCchHHHHHHHHHHHCCC-cEEEEecc
Q 008503 74 ILVIGGGATGCGVALDAATRGL-RVGLVERE 103 (563)
Q Consensus 74 VvIIGaGiaG~~~A~~la~~G~-~V~llEk~ 103 (563)
|.|||+|.+|..+|+.++..|+ .|+|+|.+
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~ 31 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIV 31 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCC
Confidence 5799999999999999999887 99999987
No 460
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=86.89 E-value=1 Score=45.75 Aligned_cols=35 Identities=17% Similarity=0.450 Sum_probs=31.3
Q ss_pred CCCccEEEECCchHHHHHHHHHHHCCC--cEEEEecc
Q 008503 69 SNPLDILVIGGGATGCGVALDAATRGL--RVGLVERE 103 (563)
Q Consensus 69 ~~~~DVvIIGaGiaG~~~A~~la~~G~--~V~llEk~ 103 (563)
.....|.|||+|-+|.++|+.|+..|+ .+.|+|.+
T Consensus 4 ~~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~ 40 (315)
T PRK00066 4 KQHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDIN 40 (315)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 345689999999999999999999998 79999986
No 461
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=86.88 E-value=0.74 Score=48.70 Aligned_cols=32 Identities=34% Similarity=0.305 Sum_probs=30.0
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEeccC
Q 008503 73 DILVIGGGATGCGVALDAATRGLRVGLVERED 104 (563)
Q Consensus 73 DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~ 104 (563)
.|.|||.|..|+..|..|++.|++|+++|++.
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~ 33 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQ 33 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCH
Confidence 48999999999999999999999999999873
No 462
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=86.79 E-value=0.84 Score=46.68 Aligned_cols=32 Identities=38% Similarity=0.596 Sum_probs=30.1
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEecc
Q 008503 72 LDILVIGGGATGCGVALDAATRGLRVGLVERE 103 (563)
Q Consensus 72 ~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~ 103 (563)
..|.|||+|..|...|..|++.|++|.++++.
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~ 36 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKGVPVRLWARR 36 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 36999999999999999999999999999986
No 463
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=86.69 E-value=0.92 Score=46.18 Aligned_cols=33 Identities=27% Similarity=0.283 Sum_probs=30.2
Q ss_pred ccEEEECCchHHHHHHHHHHHCCC-cEEEEeccC
Q 008503 72 LDILVIGGGATGCGVALDAATRGL-RVGLVERED 104 (563)
Q Consensus 72 ~DVvIIGaGiaG~~~A~~la~~G~-~V~llEk~~ 104 (563)
..|+|||+|.+|..+|+.++..|+ +++|+|.+.
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~ 40 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVK 40 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence 479999999999999999999996 899999874
No 464
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=86.67 E-value=0.88 Score=46.32 Aligned_cols=31 Identities=35% Similarity=0.520 Sum_probs=29.6
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEecc
Q 008503 73 DILVIGGGATGCGVALDAATRGLRVGLVERE 103 (563)
Q Consensus 73 DVvIIGaGiaG~~~A~~la~~G~~V~llEk~ 103 (563)
.|.|||+|..|...|..|++.|++|.++++.
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~ 33 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGHDVTLWARD 33 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEECC
Confidence 5999999999999999999999999999986
No 465
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=86.49 E-value=0.9 Score=48.10 Aligned_cols=33 Identities=33% Similarity=0.220 Sum_probs=30.5
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEeccC
Q 008503 72 LDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (563)
Q Consensus 72 ~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~ 104 (563)
..|.|||.|..|+..|..|++.|++|+++|++.
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~ 36 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQ 36 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCH
Confidence 359999999999999999999999999999863
No 466
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=86.48 E-value=0.83 Score=49.59 Aligned_cols=31 Identities=29% Similarity=0.463 Sum_probs=29.8
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEecc
Q 008503 73 DILVIGGGATGCGVALDAATRGLRVGLVERE 103 (563)
Q Consensus 73 DVvIIGaGiaG~~~A~~la~~G~~V~llEk~ 103 (563)
.|.|||+|..|...|..+++.|++|+|+|+.
T Consensus 6 kIavIG~G~MG~~iA~~la~~G~~V~v~D~~ 36 (495)
T PRK07531 6 KAACIGGGVIGGGWAARFLLAGIDVAVFDPH 36 (495)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCeEEEEeCC
Confidence 5999999999999999999999999999986
No 467
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=86.36 E-value=0.77 Score=52.12 Aligned_cols=31 Identities=35% Similarity=0.582 Sum_probs=29.2
Q ss_pred cEEEECCchHHHHHHHHHH-HCCCcEEEEecc
Q 008503 73 DILVIGGGATGCGVALDAA-TRGLRVGLVERE 103 (563)
Q Consensus 73 DVvIIGaGiaG~~~A~~la-~~G~~V~llEk~ 103 (563)
.|.|||+|..|..+|..++ ..|+.|+++|..
T Consensus 311 ~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~ 342 (708)
T PRK11154 311 KVGVLGGGLMGGGIAYVTATKAGLPVRIKDIN 342 (708)
T ss_pred EEEEECCchhhHHHHHHHHHHcCCeEEEEeCC
Confidence 5999999999999999999 889999999986
No 468
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=86.30 E-value=1.3 Score=43.01 Aligned_cols=36 Identities=25% Similarity=0.515 Sum_probs=31.7
Q ss_pred CccEEEECCchHHHHHHHHHHHCCC-cEEEEeccCCC
Q 008503 71 PLDILVIGGGATGCGVALDAATRGL-RVGLVEREDFS 106 (563)
Q Consensus 71 ~~DVvIIGaGiaG~~~A~~la~~G~-~V~llEk~~~~ 106 (563)
...|+|||+|-.|..+|..|++.|. +++++|...+.
T Consensus 24 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve 60 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVS 60 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCccc
Confidence 4689999999999999999999996 68888988543
No 469
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=86.28 E-value=1.1 Score=48.01 Aligned_cols=33 Identities=30% Similarity=0.317 Sum_probs=30.5
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEeccC
Q 008503 72 LDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (563)
Q Consensus 72 ~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~ 104 (563)
..|+|+|.|.+|+++|..|+++|++|.+.|..+
T Consensus 6 ~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~ 38 (445)
T PRK04308 6 KKILVAGLGGTGISMIAYLRKNGAEVAAYDAEL 38 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 469999999999999999999999999999764
No 470
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=86.23 E-value=0.94 Score=45.28 Aligned_cols=33 Identities=24% Similarity=0.454 Sum_probs=30.0
Q ss_pred CccEEEECCchHHHHHHHHHHHCCC-cEEEEecc
Q 008503 71 PLDILVIGGGATGCGVALDAATRGL-RVGLVERE 103 (563)
Q Consensus 71 ~~DVvIIGaGiaG~~~A~~la~~G~-~V~llEk~ 103 (563)
...|+|||+|-+|.++|+.|++.|. +|.|++|.
T Consensus 127 ~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~ 160 (284)
T PRK12549 127 LERVVQLGAGGAGAAVAHALLTLGVERLTIFDVD 160 (284)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCC
Confidence 3579999999999999999999998 69999886
No 471
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=86.03 E-value=0.97 Score=48.36 Aligned_cols=33 Identities=21% Similarity=0.246 Sum_probs=30.2
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEeccC
Q 008503 72 LDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (563)
Q Consensus 72 ~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~ 104 (563)
-.|+|+|+|.+|.++|..|++.|++|++.|+..
T Consensus 6 k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~ 38 (447)
T PRK02472 6 KKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP 38 (447)
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 358999999999999999999999999999763
No 472
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=85.82 E-value=0.9 Score=51.49 Aligned_cols=32 Identities=28% Similarity=0.520 Sum_probs=29.2
Q ss_pred cEEEECCchHHHHHHHHHH-HCCCcEEEEeccC
Q 008503 73 DILVIGGGATGCGVALDAA-TRGLRVGLVERED 104 (563)
Q Consensus 73 DVvIIGaGiaG~~~A~~la-~~G~~V~llEk~~ 104 (563)
.|.|||+|..|..+|..++ ..|++|+|+|..+
T Consensus 306 ~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~ 338 (699)
T TIGR02440 306 KVGILGGGLMGGGIASVTATKAGIPVRIKDINP 338 (699)
T ss_pred EEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCH
Confidence 5999999999999999988 5899999999873
No 473
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=85.69 E-value=1.1 Score=43.48 Aligned_cols=37 Identities=27% Similarity=0.497 Sum_probs=31.8
Q ss_pred CCCccEEEECCchHHHHHHHHHHHCC-----------CcEEEEeccCC
Q 008503 69 SNPLDILVIGGGATGCGVALDAATRG-----------LRVGLVEREDF 105 (563)
Q Consensus 69 ~~~~DVvIIGaGiaG~~~A~~la~~G-----------~~V~llEk~~~ 105 (563)
+....|+|||+|-.|+.++..|++.| .+++|+|.+.+
T Consensus 9 ~~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~V 56 (244)
T TIGR03736 9 SRPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTV 56 (244)
T ss_pred hCCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEE
Confidence 35679999999999999999999974 38999998854
No 474
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=85.68 E-value=0.97 Score=45.06 Aligned_cols=31 Identities=32% Similarity=0.378 Sum_probs=29.3
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEecc
Q 008503 73 DILVIGGGATGCGVALDAATRGLRVGLVERE 103 (563)
Q Consensus 73 DVvIIGaGiaG~~~A~~la~~G~~V~llEk~ 103 (563)
.|.|||.|..|.+.|..|.+.|++|.+++++
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~ 32 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRR 32 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECC
Confidence 4899999999999999999999999999986
No 475
>PRK06223 malate dehydrogenase; Reviewed
Probab=85.35 E-value=1.2 Score=45.16 Aligned_cols=32 Identities=31% Similarity=0.347 Sum_probs=29.2
Q ss_pred ccEEEECCchHHHHHHHHHHHCCC-cEEEEecc
Q 008503 72 LDILVIGGGATGCGVALDAATRGL-RVGLVERE 103 (563)
Q Consensus 72 ~DVvIIGaGiaG~~~A~~la~~G~-~V~llEk~ 103 (563)
..|.|||+|..|..+|+.++..|+ .|+|+|..
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~ 35 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIV 35 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECC
Confidence 369999999999999999999876 99999985
No 476
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=85.24 E-value=1.1 Score=46.91 Aligned_cols=34 Identities=32% Similarity=0.400 Sum_probs=31.0
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEeccC
Q 008503 71 PLDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (563)
Q Consensus 71 ~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~ 104 (563)
...|+|||.|.+|..+|..|...|.+|+++|..+
T Consensus 195 Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp 228 (406)
T TIGR00936 195 GKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDP 228 (406)
T ss_pred cCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCCh
Confidence 3479999999999999999999999999999874
No 477
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=85.19 E-value=1.5 Score=38.75 Aligned_cols=31 Identities=32% Similarity=0.587 Sum_probs=28.4
Q ss_pred cEEEECC-chHHHHHHHHHHHCCC--cEEEEecc
Q 008503 73 DILVIGG-GATGCGVALDAATRGL--RVGLVERE 103 (563)
Q Consensus 73 DVvIIGa-GiaG~~~A~~la~~G~--~V~llEk~ 103 (563)
.|.|||+ |.+|..+|+.|...++ ++.|+|..
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~ 35 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDIN 35 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESS
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCceEEeccC
Confidence 5899999 9999999999999975 69999987
No 478
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=85.19 E-value=1.1 Score=40.44 Aligned_cols=33 Identities=33% Similarity=0.450 Sum_probs=27.3
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEeccC
Q 008503 72 LDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (563)
Q Consensus 72 ~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~ 104 (563)
..++|+|-|-.|-.+|..|...|.+|+|.|.++
T Consensus 24 k~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DP 56 (162)
T PF00670_consen 24 KRVVVIGYGKVGKGIARALRGLGARVTVTEIDP 56 (162)
T ss_dssp SEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSH
T ss_pred CEEEEeCCCcccHHHHHHHhhCCCEEEEEECCh
Confidence 469999999999999999999999999999985
No 479
>PRK08328 hypothetical protein; Provisional
Probab=84.93 E-value=1.4 Score=42.50 Aligned_cols=35 Identities=29% Similarity=0.433 Sum_probs=30.9
Q ss_pred CccEEEECCchHHHHHHHHHHHCCC-cEEEEeccCC
Q 008503 71 PLDILVIGGGATGCGVALDAATRGL-RVGLVEREDF 105 (563)
Q Consensus 71 ~~DVvIIGaGiaG~~~A~~la~~G~-~V~llEk~~~ 105 (563)
+..|+|||+|-.|+.+|..|++.|. ++.|+|...+
T Consensus 27 ~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~v 62 (231)
T PRK08328 27 KAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTP 62 (231)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcc
Confidence 4679999999999999999999997 5888988754
No 480
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=84.72 E-value=1.3 Score=44.88 Aligned_cols=32 Identities=22% Similarity=0.581 Sum_probs=29.0
Q ss_pred cEEEECCchHHHHHHHHHHHCCC--cEEEEeccC
Q 008503 73 DILVIGGGATGCGVALDAATRGL--RVGLVERED 104 (563)
Q Consensus 73 DVvIIGaGiaG~~~A~~la~~G~--~V~llEk~~ 104 (563)
.|+|||+|-+|.++|+.|+..|+ .+.|+|++.
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~ 35 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINE 35 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 48999999999999999999994 799999973
No 481
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=84.71 E-value=1.1 Score=46.81 Aligned_cols=31 Identities=23% Similarity=0.176 Sum_probs=27.9
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEeccC
Q 008503 73 DILVIGGGATGCGVALDAATRGLRVGLVERED 104 (563)
Q Consensus 73 DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~ 104 (563)
.|.|||.|..|+.+|..++. |++|+++|.+.
T Consensus 2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~ 32 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILP 32 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCcEEEEECCH
Confidence 48999999999999988885 99999999973
No 482
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=84.43 E-value=1.4 Score=42.92 Aligned_cols=35 Identities=29% Similarity=0.530 Sum_probs=31.5
Q ss_pred CccEEEECCchHHHHHHHHHHHCCC-cEEEEeccCC
Q 008503 71 PLDILVIGGGATGCGVALDAATRGL-RVGLVEREDF 105 (563)
Q Consensus 71 ~~DVvIIGaGiaG~~~A~~la~~G~-~V~llEk~~~ 105 (563)
+..|+|||+|-.|+.+|..|++.|. +++|+|...+
T Consensus 32 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~v 67 (245)
T PRK05690 32 AARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTV 67 (245)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEE
Confidence 5689999999999999999999997 7999998754
No 483
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=84.36 E-value=1.5 Score=39.84 Aligned_cols=31 Identities=32% Similarity=0.448 Sum_probs=27.8
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEecc
Q 008503 73 DILVIGGGATGCGVALDAATRGLRVGLVERE 103 (563)
Q Consensus 73 DVvIIGaGiaG~~~A~~la~~G~~V~llEk~ 103 (563)
.|-|||-|..|...|..|.+.|++|.+.|+.
T Consensus 3 ~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~ 33 (163)
T PF03446_consen 3 KIGFIGLGNMGSAMARNLAKAGYEVTVYDRS 33 (163)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTTEEEEEESS
T ss_pred EEEEEchHHHHHHHHHHHHhcCCeEEeeccc
Confidence 6899999999999999999999999999987
No 484
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=84.14 E-value=1.3 Score=47.52 Aligned_cols=32 Identities=25% Similarity=0.320 Sum_probs=28.9
Q ss_pred ccEEEECCchHHHHHHHHHHHC--CCcEEEEecc
Q 008503 72 LDILVIGGGATGCGVALDAATR--GLRVGLVERE 103 (563)
Q Consensus 72 ~DVvIIGaGiaG~~~A~~la~~--G~~V~llEk~ 103 (563)
..|.|||.|.+|+.+|..|++. |++|+.+|.+
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~ 35 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDIS 35 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECC
Confidence 3599999999999999999998 4889999986
No 485
>PF08491 SE: Squalene epoxidase; InterPro: IPR013698 This domain is found in squalene epoxidase (SE) and related proteins which are found in taxonomically diverse groups of eukaryotes and also in bacteria. SE was first cloned from Saccharomyces cerevisiae (Baker's yeast) where it was named ERG1. It contains a putative FAD binding site and is a key enzyme in the sterol biosynthetic pathway []. Putative transmembrane regions are found to the protein's C terminus. ; GO: 0004506 squalene monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=83.93 E-value=6 Score=39.02 Aligned_cols=30 Identities=17% Similarity=0.031 Sum_probs=22.3
Q ss_pred cCCCeEE-EecChhhhhHHHHHHHHHHHHHc
Q 008503 361 DFPGLVT-ITGGKWTTYRSMAEDAVNAAIKS 390 (563)
Q Consensus 361 ~~~gl~~-~~Gg~~t~a~~~Ae~v~~~i~~~ 390 (563)
+.-|+.+ ++||++|.|..-+..+.+++...
T Consensus 137 DA~nmrHPLTGgGMTVAl~Dv~lL~~lL~~~ 167 (276)
T PF08491_consen 137 DAANMRHPLTGGGMTVALNDVVLLRDLLSPI 167 (276)
T ss_pred hhhcCcCCccccchhhHHHHHHHHHHHHhhh
Confidence 3456665 88999999988888888776543
No 486
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=83.62 E-value=1.7 Score=40.61 Aligned_cols=32 Identities=41% Similarity=0.566 Sum_probs=29.3
Q ss_pred ccEEEECC-chHHHHHHHHHHHCCCcEEEEecc
Q 008503 72 LDILVIGG-GATGCGVALDAATRGLRVGLVERE 103 (563)
Q Consensus 72 ~DVvIIGa-GiaG~~~A~~la~~G~~V~llEk~ 103 (563)
..++|+|| |.+|..+|..|++.|.+|.++.|+
T Consensus 29 ~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~ 61 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLAREGARVVLVGRD 61 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 47999997 999999999999999999999775
No 487
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=83.60 E-value=1.5 Score=43.93 Aligned_cols=33 Identities=30% Similarity=0.378 Sum_probs=30.7
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEecc
Q 008503 71 PLDILVIGGGATGCGVALDAATRGLRVGLVERE 103 (563)
Q Consensus 71 ~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~ 103 (563)
...|+|||.|-+|..+|..|...|.+|.+++|.
T Consensus 151 gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~ 183 (287)
T TIGR02853 151 GSNVMVLGFGRTGMTIARTFSALGARVFVGARS 183 (287)
T ss_pred CCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCC
Confidence 357999999999999999999999999999986
No 488
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=83.46 E-value=1.4 Score=46.36 Aligned_cols=34 Identities=29% Similarity=0.296 Sum_probs=31.0
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEeccC
Q 008503 71 PLDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (563)
Q Consensus 71 ~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~ 104 (563)
...|+|||.|..|..+|..|...|.+|+++|..+
T Consensus 212 Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp 245 (425)
T PRK05476 212 GKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDP 245 (425)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCc
Confidence 3469999999999999999999999999999874
No 489
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=83.42 E-value=1.7 Score=41.64 Aligned_cols=31 Identities=35% Similarity=0.563 Sum_probs=28.4
Q ss_pred cEEEEC-CchHHHHHHHHHHHCCCcEEEEecc
Q 008503 73 DILVIG-GGATGCGVALDAATRGLRVGLVERE 103 (563)
Q Consensus 73 DVvIIG-aGiaG~~~A~~la~~G~~V~llEk~ 103 (563)
.|.||| +|..|.+.|..|++.|++|.+++++
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~ 33 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRD 33 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcC
Confidence 489997 7999999999999999999999775
No 490
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=83.31 E-value=1.5 Score=47.27 Aligned_cols=34 Identities=29% Similarity=0.432 Sum_probs=30.9
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEeccC
Q 008503 71 PLDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (563)
Q Consensus 71 ~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~~ 104 (563)
...|+|+|+|.+|+.++..|...|.+|.++|.+.
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~ 197 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRP 197 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 3579999999999999999999999999999873
No 491
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=83.30 E-value=1.6 Score=43.75 Aligned_cols=33 Identities=18% Similarity=0.411 Sum_probs=29.6
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCc-EEEEecc
Q 008503 71 PLDILVIGGGATGCGVALDAATRGLR-VGLVERE 103 (563)
Q Consensus 71 ~~DVvIIGaGiaG~~~A~~la~~G~~-V~llEk~ 103 (563)
...++|+|+|-+|.++|+.|++.|.+ |.|+.|.
T Consensus 126 ~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~ 159 (289)
T PRK12548 126 GKKLTVIGAGGAATAIQVQCALDGAKEITIFNIK 159 (289)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 34689999999999999999999997 9999886
No 492
>PRK08223 hypothetical protein; Validated
Probab=83.26 E-value=2.7 Score=41.77 Aligned_cols=35 Identities=20% Similarity=0.289 Sum_probs=31.2
Q ss_pred CccEEEECCchHHHHHHHHHHHCCC-cEEEEeccCC
Q 008503 71 PLDILVIGGGATGCGVALDAATRGL-RVGLVEREDF 105 (563)
Q Consensus 71 ~~DVvIIGaGiaG~~~A~~la~~G~-~V~llEk~~~ 105 (563)
+..|+|||+|-.|+.+|..|++.|. ++.|+|.+.+
T Consensus 27 ~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~V 62 (287)
T PRK08223 27 NSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVF 62 (287)
T ss_pred cCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCc
Confidence 5689999999999999999999997 6888888754
No 493
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=83.11 E-value=1.8 Score=41.76 Aligned_cols=35 Identities=31% Similarity=0.539 Sum_probs=31.3
Q ss_pred CccEEEECCchHHHHHHHHHHHCCC-cEEEEeccCC
Q 008503 71 PLDILVIGGGATGCGVALDAATRGL-RVGLVEREDF 105 (563)
Q Consensus 71 ~~DVvIIGaGiaG~~~A~~la~~G~-~V~llEk~~~ 105 (563)
+..|+|||+|-.|+.+|..|++.|. +++|+|...+
T Consensus 21 ~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~v 56 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVV 56 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEE
Confidence 4689999999999999999999998 6888888754
No 494
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=82.99 E-value=2.2 Score=40.08 Aligned_cols=35 Identities=26% Similarity=0.522 Sum_probs=31.5
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCc-EEEEeccCC
Q 008503 71 PLDILVIGGGATGCGVALDAATRGLR-VGLVEREDF 105 (563)
Q Consensus 71 ~~DVvIIGaGiaG~~~A~~la~~G~~-V~llEk~~~ 105 (563)
+..|+|||+|-.|+.+|..|++.|.+ ++++|...+
T Consensus 19 ~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~v 54 (198)
T cd01485 19 SAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLV 54 (198)
T ss_pred hCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcC
Confidence 46899999999999999999999985 999998854
No 495
>PTZ00117 malate dehydrogenase; Provisional
Probab=82.97 E-value=1.8 Score=44.00 Aligned_cols=34 Identities=29% Similarity=0.268 Sum_probs=30.3
Q ss_pred CccEEEECCchHHHHHHHHHHHCC-CcEEEEeccC
Q 008503 71 PLDILVIGGGATGCGVALDAATRG-LRVGLVERED 104 (563)
Q Consensus 71 ~~DVvIIGaGiaG~~~A~~la~~G-~~V~llEk~~ 104 (563)
...|.|||+|.+|..+|+.++..| ..++|+|.+.
T Consensus 5 ~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~ 39 (319)
T PTZ00117 5 RKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIK 39 (319)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCC
Confidence 457999999999999999999999 5899999863
No 496
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=82.82 E-value=1.4 Score=44.10 Aligned_cols=30 Identities=20% Similarity=0.342 Sum_probs=28.7
Q ss_pred EEEECCchHHHHHHHHHHHCCCcEEEEecc
Q 008503 74 ILVIGGGATGCGVALDAATRGLRVGLVERE 103 (563)
Q Consensus 74 VvIIGaGiaG~~~A~~la~~G~~V~llEk~ 103 (563)
|.|||.|..|...|..|++.|++|++++++
T Consensus 2 IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~ 31 (291)
T TIGR01505 2 VGFIGLGIMGSPMSINLAKAGYQLHVTTIG 31 (291)
T ss_pred EEEEEecHHHHHHHHHHHHCCCeEEEEcCC
Confidence 789999999999999999999999999886
No 497
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=82.70 E-value=2.8 Score=40.45 Aligned_cols=36 Identities=22% Similarity=0.347 Sum_probs=32.0
Q ss_pred CccEEEECCchHHHHHHHHHHHCCC-cEEEEeccCCC
Q 008503 71 PLDILVIGGGATGCGVALDAATRGL-RVGLVEREDFS 106 (563)
Q Consensus 71 ~~DVvIIGaGiaG~~~A~~la~~G~-~V~llEk~~~~ 106 (563)
+..|+|||.|-.|..+|..|++.|. +++|+|...+.
T Consensus 11 ~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~ 47 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVC 47 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEEC
Confidence 4679999999999999999999998 79999988543
No 498
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=82.61 E-value=2.5 Score=33.70 Aligned_cols=31 Identities=35% Similarity=0.568 Sum_probs=28.5
Q ss_pred ccEEEECCchHHHHHHHHHHHC-CCcEEEEec
Q 008503 72 LDILVIGGGATGCGVALDAATR-GLRVGLVER 102 (563)
Q Consensus 72 ~DVvIIGaGiaG~~~A~~la~~-G~~V~llEk 102 (563)
..++|+|.|.+|..++..|.+. +.+|.++++
T Consensus 24 ~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 24 KTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 4799999999999999999998 678999999
No 499
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=82.57 E-value=1.8 Score=43.58 Aligned_cols=33 Identities=30% Similarity=0.380 Sum_probs=31.1
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEecc
Q 008503 71 PLDILVIGGGATGCGVALDAATRGLRVGLVERE 103 (563)
Q Consensus 71 ~~DVvIIGaGiaG~~~A~~la~~G~~V~llEk~ 103 (563)
...|+|||.|.+|..++..|...|.+|.++++.
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~ 184 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKALGANVTVGARK 184 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECC
Confidence 468999999999999999999999999999887
No 500
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=82.38 E-value=1.5 Score=44.25 Aligned_cols=31 Identities=35% Similarity=0.530 Sum_probs=28.2
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEecc
Q 008503 73 DILVIGGGATGCGVALDAATRGLRVGLVERE 103 (563)
Q Consensus 73 DVvIIGaGiaG~~~A~~la~~G~~V~llEk~ 103 (563)
.|.|+|+|..|+..|+.|++.|..|+++-|.
T Consensus 2 kI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~ 32 (307)
T COG1893 2 KILILGAGAIGSLLGARLAKAGHDVTLLVRS 32 (307)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCeEEEEecH
Confidence 4899999999999999999999888888776
Done!