BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008506
(563 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q659C4|LAR1B_HUMAN La-related protein 1B OS=Homo sapiens GN=LARP1B PE=1 SV=2
Length = 914
Score = 93.6 bits (231), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 44/100 (44%), Positives = 67/100 (67%)
Query: 280 FFPYPVNSGAPMLPPETLALKANIVKQIEYYFSDENLQNDHYLISLMDAQGWVPIAIIAD 339
+ Y +G + P E LK I +QIEYYFS ENL+ D +L MD QG++PI++IA
Sbjct: 196 MYYYDDGTGVQVYPVEEALLKEYIKRQIEYYFSVENLERDFFLRGKMDEQGFLPISLIAG 255
Query: 340 FKRVKRMSTDLPFILDALQNSSTVEAQGDKVRRRDEWSKW 379
F+RV+ ++T+L IL+AL++S+ VE +K+R++ E KW
Sbjct: 256 FQRVQALTTNLNLILEALKDSTEVEIVDEKMRKKIEPEKW 295
>sp|Q6PKG0|LARP1_HUMAN La-related protein 1 OS=Homo sapiens GN=LARP1 PE=1 SV=2
Length = 1096
Score = 90.1 bits (222), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 44/96 (45%), Positives = 64/96 (66%), Gaps = 1/96 (1%)
Query: 299 LKANIVKQIEYYFSDENLQNDHYLISLMDAQGWVPIAIIADFKRVKRMSTDLPFILDALQ 358
LK I +QIEYYFS +NL+ D +L MDA G++PI +IA F RV+ ++TD+ I AL+
Sbjct: 403 LKDYIKRQIEYYFSVDNLERDFFLRRKMDADGFLPITLIASFHRVQALTTDISLIFAALK 462
Query: 359 NSSTVEAQGDKVRRRDEWSKW-IPASVEQTMSSTAQ 393
+S VE +KVRRR+E KW +P V+ + + +Q
Sbjct: 463 DSKVVEIVDEKVRRREEPEKWPLPPIVDYSQTDFSQ 498
>sp|Q6ZQ58|LARP1_MOUSE La-related protein 1 OS=Mus musculus GN=Larp1 PE=1 SV=2
Length = 1072
Score = 89.4 bits (220), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 41/81 (50%), Positives = 56/81 (69%)
Query: 299 LKANIVKQIEYYFSDENLQNDHYLISLMDAQGWVPIAIIADFKRVKRMSTDLPFILDALQ 358
LK I +QIEYYFS +NL+ D +L MDA G++PI +IA F RV+ ++TD+ I AL+
Sbjct: 378 LKDYIKRQIEYYFSVDNLERDFFLRRKMDADGFLPITLIASFHRVQALTTDISLIFAALK 437
Query: 359 NSSTVEAQGDKVRRRDEWSKW 379
+S VE +KVRRR+E KW
Sbjct: 438 DSKVVEMVEEKVRRREEPEKW 458
>sp|Q9P6K0|YLA3_SCHPO Uncharacterized HTH La-type RNA-binding protein C1527.03
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC1527.03 PE=1 SV=1
Length = 475
Score = 83.6 bits (205), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 63/116 (54%), Gaps = 11/116 (9%)
Query: 272 IRGPHPQRFFPYPVNSGAPMLPPETLALKANIVKQIEYYFSDENLQNDHYLISLMDAQGW 331
I+GP P YPV + P ++A + Q+EYYFS ENL D +L MD +G+
Sbjct: 302 IQGPFPN----YPVVVNGNGVNPYLCDVQAFLTSQLEYYFSIENLCKDMFLRKHMDDEGY 357
Query: 332 VPIAIIADFKRVKRMSTDLPFILDALQNSSTVEAQGD-------KVRRRDEWSKWI 380
VP+A +A F R+K STDL + A + S ++ D KVRR++ WS WI
Sbjct: 358 VPLAFLASFNRIKSFSTDLNLLHAACKASDIIDVAIDLQSPMSIKVRRKETWSPWI 413
>sp|Q9VAW5|LARP_DROME La-related protein OS=Drosophila melanogaster GN=larp PE=1 SV=5
Length = 1673
Score = 72.8 bits (177), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 54/83 (65%), Gaps = 1/83 (1%)
Query: 298 ALKANIVKQIEYYFSDENLQNDHYLISLMDAQGWVPIAIIADFKRVKRMSTDLPFILDAL 357
++K I KQ+EYYFS +NL D +L MD +G++P+ +IA F RV ++TD+ I++A+
Sbjct: 728 SIKEAIKKQVEYYFSVDNLTGDFFLRRKMDPEGYIPVTLIASFHRVLALTTDVAVIVNAI 787
Query: 358 QNSSTVEA-QGDKVRRRDEWSKW 379
+ S +E +G KVR + + W
Sbjct: 788 KESDKLELFEGYKVRTKTTPTTW 810
>sp|Q9I7T7|Y1505_DROME La-related protein CG11505 OS=Drosophila melanogaster GN=CG11505
PE=1 SV=2
Length = 1531
Score = 72.4 bits (176), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 48/82 (58%)
Query: 299 LKANIVKQIEYYFSDENLQNDHYLISLMDAQGWVPIAIIADFKRVKRMSTDLPFILDALQ 358
LK + Q+EYYFS ENL ND YL+S MD+ +VPI +A F V++++ D+ I + L+
Sbjct: 268 LKQMLATQLEYYFSRENLANDTYLLSQMDSDQYVPIYTVARFNLVRKLTNDINLITEVLR 327
Query: 359 NSSTVEAQGDKVRRRDEWSKWI 380
S V+ +R R + I
Sbjct: 328 ESPNVQVDDKGLRVRPNRKRCI 349
>sp|Q71RC2|LARP4_HUMAN La-related protein 4 OS=Homo sapiens GN=LARP4 PE=1 SV=3
Length = 724
Score = 72.0 bits (175), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 61/104 (58%), Gaps = 3/104 (2%)
Query: 270 GSIRGPHPQRFFPYPVNSGAPMLPPETLALKANIVKQIEYYFSDENLQNDHYLISLMDAQ 329
G I GP + Y V SG T LK + KQ+E+ FS ENL D YLIS MD+
Sbjct: 91 GMILGPEDLSYQIYDV-SGESNSAVSTEDLKECLKKQLEFCFSRENLSKDLYLISQMDSD 149
Query: 330 GWVPIAIIADFKRVKRMSTDLPFILDALQNSSTVEA--QGDKVR 371
++PI +A+ + +K+++TD IL+ L++S V+ +G+KVR
Sbjct: 150 QFIPIWTVANMEEIKKLTTDPDLILEVLRSSPMVQVDEKGEKVR 193
>sp|Q8BWW4|LARP4_MOUSE La-related protein 4 OS=Mus musculus GN=Larp4 PE=1 SV=2
Length = 719
Score = 71.6 bits (174), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 61/104 (58%), Gaps = 3/104 (2%)
Query: 270 GSIRGPHPQRFFPYPVNSGAPMLPPETLALKANIVKQIEYYFSDENLQNDHYLISLMDAQ 329
G I GP + Y V SG T LK + KQ+E+ FS ENL D YLIS MD+
Sbjct: 87 GMILGPEDLSYQLYDV-SGESSSAISTEDLKECLKKQLEFCFSRENLSKDLYLISQMDSD 145
Query: 330 GWVPIAIIADFKRVKRMSTDLPFILDALQNSSTVEA--QGDKVR 371
+VPI +A+ + +K+++T+ IL+ L++S V+ +G+KVR
Sbjct: 146 QFVPIWTVANMEEIKKLTTNTDLILEVLRSSPMVQVDEKGEKVR 189
>sp|P25567|SRO9_YEAST RNA-binding protein SRO9 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=SRO9 PE=1 SV=2
Length = 434
Score = 63.9 bits (154), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 63/137 (45%), Gaps = 39/137 (28%)
Query: 278 QRFFPYPVNSGAPMLPPETLALKANIVKQIEYYFSDENLQNDHYLISLMDAQGWVPIAII 337
Q+F+P + P +A+ NI +QIEYYFS+ENL D+YL S + G+ P+++I
Sbjct: 250 QQFYP---------VQPVLMAIN-NIARQIEYYFSEENLTVDNYLRSKLSKDGFAPLSLI 299
Query: 338 ADFKRVKRMS--TDLPFILDALQNSSTVEA-------------QGDKVR----------- 371
+ F RV MS D IL AL+ EA +GD V
Sbjct: 300 SKFYRVVNMSFGGDTNLILAALREIVANEAATVNVAEGTLAAKEGDNVTGEAKEPSPLDK 359
Query: 372 ---RRDEWSKWIPASVE 385
R WS W+P + E
Sbjct: 360 YFVRSKSWSNWLPETFE 376
>sp|P28049|LAB_XENLA Lupus La protein homolog B OS=Xenopus laevis GN=ssb-b PE=2 SV=1
Length = 427
Score = 63.9 bits (154), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 47/85 (55%), Gaps = 7/85 (8%)
Query: 294 PETLALKANIVKQIEYYFSDENLQNDHYLIS--LMDAQGWVPIAIIADFKRVKRMSTDLP 351
E L L I +QIEYYF D NL D +L L+D GWVP+ + F R+ +++TD
Sbjct: 7 KEQLDLDTKICEQIEYYFGDHNLPRDKFLKQQVLLD-NGWVPLETMIKFNRLSKLTTDFN 65
Query: 352 FILDALQNSST----VEAQGDKVRR 372
IL AL+ S T + + K+RR
Sbjct: 66 IILQALKKSKTELLEINEEKCKIRR 90
>sp|Q7ZWE3|LARP7_DANRE La-related protein 7 OS=Danio rerio GN=larp7 PE=2 SV=1
Length = 555
Score = 63.2 bits (152), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 53/80 (66%), Gaps = 4/80 (5%)
Query: 299 LKANIVKQIEYYFSDENLQNDHYLISLMDA--QGWVPIAIIADFKRVKRMSTDLPFILDA 356
L +++ KQ+E++F D NL D ++ S+++ G++ IA++ F R+K ++ D+ I A
Sbjct: 42 LLSDVKKQVEFWFGDVNLHKDRFMKSIIEQSRDGYIDIAVLTTFNRMKNLTADVKLIARA 101
Query: 357 LQNSSTVEA--QGDKVRRRD 374
L+NS+ VE +G ++RR++
Sbjct: 102 LKNSTIVEVNDEGTRIRRKE 121
>sp|Q28G87|LARP7_XENTR La-related protein 7 OS=Xenopus tropicalis GN=larp7 PE=2 SV=1
Length = 593
Score = 63.2 bits (152), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 51/79 (64%), Gaps = 4/79 (5%)
Query: 299 LKANIVKQIEYYFSDENLQNDHYLISLMDA--QGWVPIAIIADFKRVKRMSTDLPFILDA 356
L A+I KQ++++F D NL D +L ++ G++ I+++A F ++K+++TD I A
Sbjct: 36 LLADIAKQVDFWFGDVNLHKDRFLREQIEKTRDGYIDISLLASFNKMKKITTDSKLIARA 95
Query: 357 LQNSSTVEA--QGDKVRRR 373
++NSS VE G K+RRR
Sbjct: 96 VKNSSVVEINLSGTKIRRR 114
>sp|Q26457|LA_AEDAL La protein homolog OS=Aedes albopictus PE=1 SV=1
Length = 383
Score = 63.2 bits (152), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 48/79 (60%), Gaps = 5/79 (6%)
Query: 299 LKANIVKQIEYYFSDENLQNDHYLISLMDA-QGWVPIAIIADFKRVKRMSTDLPFILDAL 357
L+A+ ++Q+EYYF D NL D +L + +GWVP+ ++ FKR+K +S D I+DA+
Sbjct: 43 LEASTIRQLEYYFGDANLARDKFLQEQISKDEGWVPVDVLLTFKRLKSLSEDKKVIVDAI 102
Query: 358 QNSS----TVEAQGDKVRR 372
+ S V +K+RR
Sbjct: 103 EKSDEGLIEVSEDREKLRR 121
>sp|Q92615|LAR4B_HUMAN La-related protein 4B OS=Homo sapiens GN=LARP4B PE=1 SV=3
Length = 738
Score = 62.8 bits (151), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 47/71 (66%), Gaps = 2/71 (2%)
Query: 303 IVKQIEYYFSDENLQNDHYLISLMDAQGWVPIAIIADFKRVKRMSTDLPFILDALQNSST 362
+ K +E+ S ENL +D YLIS MD+ +VPI +A+ +K++STD+ I++ L++
Sbjct: 160 LKKTLEFCLSRENLASDMYLISQMDSDQYVPITTVANLDHIKKLSTDVDLIVEVLRSLPL 219
Query: 363 VEA--QGDKVR 371
V+ +G+KVR
Sbjct: 220 VQVDEKGEKVR 230
>sp|Q6A0A2|LAR4B_MOUSE La-related protein 4B OS=Mus musculus GN=Larp4b PE=1 SV=2
Length = 741
Score = 62.8 bits (151), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 47/71 (66%), Gaps = 2/71 (2%)
Query: 303 IVKQIEYYFSDENLQNDHYLISLMDAQGWVPIAIIADFKRVKRMSTDLPFILDALQNSST 362
+ K +E+ S ENL +D YLIS MD+ +VPI +A+ +K++STD+ I++ L++
Sbjct: 162 LKKTLEFCLSRENLASDMYLISQMDSDQYVPITTVANLDHIKKLSTDVDLIVEVLRSLPL 221
Query: 363 VEA--QGDKVR 371
V+ +G+KVR
Sbjct: 222 VQVDEKGEKVR 232
>sp|P05455|LA_HUMAN Lupus La protein OS=Homo sapiens GN=SSB PE=1 SV=2
Length = 408
Score = 62.4 bits (150), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 46/79 (58%), Gaps = 3/79 (3%)
Query: 298 ALKANIVKQIEYYFSDENLQNDHYLISLMDA-QGWVPIAIIADFKRVKRMSTDLPFILDA 356
AL+A I QIEYYF D NL D +L + +GWVP+ I+ F R+ R++TD I++A
Sbjct: 12 ALEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLEIMIKFNRLNRLTTDFNVIVEA 71
Query: 357 LQNSST--VEAQGDKVRRR 373
L S +E DK + R
Sbjct: 72 LSKSKAELMEISEDKTKIR 90
>sp|P10881|LA_BOVIN Lupus La protein homolog OS=Bos taurus GN=SSB PE=2 SV=2
Length = 404
Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 46/79 (58%), Gaps = 3/79 (3%)
Query: 298 ALKANIVKQIEYYFSDENLQNDHYLISLMDA-QGWVPIAIIADFKRVKRMSTDLPFILDA 356
AL+A I QIEYYF D NL D +L + +GWVP+ I+ F R+ R++TD I++A
Sbjct: 12 ALEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLEIMIKFNRLNRLTTDFNVIVEA 71
Query: 357 LQNSST--VEAQGDKVRRR 373
L S +E DK + R
Sbjct: 72 LSKSKAELMEISEDKTKIR 90
>sp|P32067|LA_MOUSE Lupus La protein homolog OS=Mus musculus GN=Ssb PE=2 SV=1
Length = 415
Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 44/80 (55%), Gaps = 5/80 (6%)
Query: 298 ALKANIVKQIEYYFSDENLQNDHYLISLMDA-QGWVPIAIIADFKRVKRMSTDLPFILDA 356
AL+A I QIEYYF D NL D +L + +GWVP+ + F R+ R++TD I+ A
Sbjct: 12 ALEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLETMIKFNRLNRLTTDFNVIVQA 71
Query: 357 LQNSST----VEAQGDKVRR 372
L S V A K+RR
Sbjct: 72 LSKSKAKLMEVSADKTKIRR 91
>sp|P40796|LA_DROME La protein homolog OS=Drosophila melanogaster GN=La PE=1 SV=2
Length = 390
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 45/75 (60%), Gaps = 4/75 (5%)
Query: 303 IVKQIEYYFSDENLQNDHYLISLM--DAQGWVPIAIIADFKRVKRMSTDLPFILDALQNS 360
I++Q+EYYF D NL D +L + + GWVP++++ FKR+ +STDL I+ AL S
Sbjct: 54 IIRQVEYYFGDANLNRDKFLREQIGKNEDGWVPLSVLVTFKRLASLSTDLSEIVAALNKS 113
Query: 361 S--TVEAQGDKVRRR 373
VE DK+ R
Sbjct: 114 EEGLVEISEDKLSLR 128
>sp|P38656|LA_RAT Lupus La protein homolog OS=Rattus norvegicus GN=Ssb PE=2 SV=1
Length = 415
Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 44/80 (55%), Gaps = 5/80 (6%)
Query: 298 ALKANIVKQIEYYFSDENLQNDHYLISLMDA-QGWVPIAIIADFKRVKRMSTDLPFILDA 356
AL+A I QIEYYF D NL D +L + +GWVP+ + F R+ R++TD I+ A
Sbjct: 12 ALEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLETMIKFNRLNRLTTDFNVIVQA 71
Query: 357 LQNSST----VEAQGDKVRR 372
L S V A K+RR
Sbjct: 72 LSKSKANLMEVSADKTKIRR 91
>sp|P87058|LAH1_SCHPO La protein homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=sla1 PE=1 SV=1
Length = 298
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 49/76 (64%), Gaps = 5/76 (6%)
Query: 301 ANIVKQIEYYFSDENLQNDHYLISLMDA-QGWVPIAIIADFKRVKRMSTDLPFILDALQN 359
A ++KQ+E+YFSD NL +D +L + GWVPI IA+FKR++R L I++AL+
Sbjct: 65 AEVLKQVEFYFSDTNLPHDKFLWTTSQKNDGWVPIQTIANFKRMRRFQP-LEAIVNALRK 123
Query: 360 S---STVEAQGDKVRR 372
S V+ G+KVRR
Sbjct: 124 SPELLEVDEAGEKVRR 139
>sp|Q5XI01|LARP7_RAT La-related protein 7 OS=Rattus norvegicus GN=Larp7 PE=1 SV=2
Length = 571
Score = 59.7 bits (143), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 50/77 (64%), Gaps = 4/77 (5%)
Query: 301 ANIVKQIEYYFSDENLQNDHYLISLMDAQ--GWVPIAIIADFKRVKRMSTDLPFILDALQ 358
A+I KQ++++F D NL D +L ++ G+V I+++ F ++K+++TD I AL+
Sbjct: 31 ADIAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIARALK 90
Query: 359 NSSTVE--AQGDKVRRR 373
+SS VE +G ++RR+
Sbjct: 91 SSSVVELDLEGTRIRRK 107
>sp|Q05CL8|LARP7_MOUSE La-related protein 7 OS=Mus musculus GN=Larp7 PE=1 SV=2
Length = 570
Score = 59.7 bits (143), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 50/77 (64%), Gaps = 4/77 (5%)
Query: 301 ANIVKQIEYYFSDENLQNDHYLISLMDAQ--GWVPIAIIADFKRVKRMSTDLPFILDALQ 358
A+I KQ++++F D NL D +L ++ G+V I+++ F ++K+++TD I AL+
Sbjct: 30 ADIAKQVDFWFGDANLHKDKFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIARALK 89
Query: 359 NSSTVE--AQGDKVRRR 373
+SS VE +G ++RR+
Sbjct: 90 SSSVVELDLEGTRIRRK 106
>sp|Q8BN59|LARP6_MOUSE La-related protein 6 OS=Mus musculus GN=Larp6 PE=1 SV=1
Length = 492
Score = 59.3 bits (142), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 50/84 (59%), Gaps = 6/84 (7%)
Query: 293 PPETLALKANIVKQIEYYFSDENLQNDHYLISLM--DAQGWVPIAIIADFKRVKRMSTDL 350
P E L K +V QIE+YFSDENL+ D +L+ + + G+V + ++ FK+VK ++ D
Sbjct: 88 PDEELIRK--LVDQIEFYFSDENLEKDAFLLKHVRRNKLGYVSVKLLTSFKKVKHLTRDW 145
Query: 351 PFILDALQNSSTVEAQGD--KVRR 372
AL+ S T+E D KVRR
Sbjct: 146 RTTAHALKYSVTLELNEDHRKVRR 169
>sp|P28048|LAA_XENLA Lupus La protein homolog A OS=Xenopus laevis GN=ssb-a PE=2 SV=1
Length = 428
Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 44/76 (57%), Gaps = 7/76 (9%)
Query: 303 IVKQIEYYFSDENLQNDHYLIS--LMDAQGWVPIAIIADFKRVKRMSTDLPFILDALQNS 360
I +QIEYYF D NL D +L L+D GWVP+ + F R+ +++TD IL AL+ S
Sbjct: 17 ICEQIEYYFGDHNLPRDKFLKQQILLD-DGWVPLETMIKFNRLSKLTTDFNTILQALKKS 75
Query: 361 ST----VEAQGDKVRR 372
T + + K+RR
Sbjct: 76 KTELLEINEEKCKIRR 91
>sp|Q4R627|LARP7_MACFA La-related protein 7 OS=Macaca fascicularis GN=LARP7 PE=2 SV=1
Length = 581
Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 50/77 (64%), Gaps = 4/77 (5%)
Query: 301 ANIVKQIEYYFSDENLQNDHYLISLMDAQ--GWVPIAIIADFKRVKRMSTDLPFILDALQ 358
A+I KQ++++F D NL D +L ++ G+V I+++ F ++K+++TD I AL+
Sbjct: 36 ADIAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIARALR 95
Query: 359 NSSTVE--AQGDKVRRR 373
+S+ VE +G ++RR+
Sbjct: 96 SSAVVELDLEGTRIRRK 112
>sp|Q9BRS8|LARP6_HUMAN La-related protein 6 OS=Homo sapiens GN=LARP6 PE=1 SV=1
Length = 491
Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 50/84 (59%), Gaps = 5/84 (5%)
Query: 293 PPETLALKANIVKQIEYYFSDENLQNDHYLISLM--DAQGWVPIAIIADFKRVKRMSTDL 350
PP+ +K +V QIE+YFSDENL+ D +L+ + + G+V + ++ FK+VK ++ D
Sbjct: 87 PPDEELIK-KLVDQIEFYFSDENLEKDAFLLKHVRRNKLGYVSVKLLTSFKKVKHLTRDW 145
Query: 351 PFILDALQNSSTVEAQGD--KVRR 372
AL+ S +E D KVRR
Sbjct: 146 RTTAHALKYSVVLELNEDHRKVRR 169
>sp|Q4G0J3|LARP7_HUMAN La-related protein 7 OS=Homo sapiens GN=LARP7 PE=1 SV=1
Length = 582
Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 50/77 (64%), Gaps = 4/77 (5%)
Query: 301 ANIVKQIEYYFSDENLQNDHYLISLMDAQ--GWVPIAIIADFKRVKRMSTDLPFILDALQ 358
A+I KQ++++F D NL D +L ++ G+V I+++ F ++K+++TD I AL+
Sbjct: 36 ADIAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIARALR 95
Query: 359 NSSTVE--AQGDKVRRR 373
+S+ VE +G ++RR+
Sbjct: 96 SSAVVELDLEGTRIRRK 112
>sp|P33399|LHP1_YEAST La protein homolog OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) GN=LHP1 PE=1 SV=2
Length = 275
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 54/92 (58%), Gaps = 8/92 (8%)
Query: 286 NSGAPM-LPPETLALKANIVKQIEYYFSDENLQNDHYLISLMDAQ-GWVPIAIIADFKRV 343
NS A + PE L +KQ+E+YFS+ N D +L + + GWVPI+ IA F R+
Sbjct: 18 NSFAVIEFTPEVLD---RCLKQVEFYFSEFNFPYDRFLRTTAEKNDGWVPISTIATFNRM 74
Query: 344 KRMSTDLPFILDALQNSSTVE--AQGDKVRRR 373
K+ + +++AL++S +E A G+ V+RR
Sbjct: 75 KKYRP-VDKVIEALRSSEILEVSADGENVKRR 105
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.131 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 245,107,882
Number of Sequences: 539616
Number of extensions: 12340871
Number of successful extensions: 33707
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 1003
Number of HSP's that attempted gapping in prelim test: 28310
Number of HSP's gapped (non-prelim): 3592
length of query: 563
length of database: 191,569,459
effective HSP length: 123
effective length of query: 440
effective length of database: 125,196,691
effective search space: 55086544040
effective search space used: 55086544040
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 64 (29.3 bits)