BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008509
(563 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WTB|A Chain A, Arabidopsis Thaliana Multifuctional Protein, Mfp2
Length = 725
Score = 647 bits (1669), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 306/547 (55%), Positives = 400/547 (73%)
Query: 1 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLS 60
M+L SK + +EEG LGLIDAVV EL+ +R WALDI RRKPW+ S+ +TDKL L
Sbjct: 166 MILTSKPVKAEEGHSLGLIDAVVPPAELVTTARRWALDIVGRRKPWVSSVSKTDKLPPLG 225
Query: 61 EAREVLKLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRG 120
EARE+L A+ Q K APNM CLD IE GIV G +G+ KEA+V ++V LDT++G
Sbjct: 226 EAREILTFAKAQTLKRAPNMKHPLMCLDAIEVGIVSGPRAGLEKEAEVASQVVKLDTTKG 285
Query: 121 LVHVFFAQRATSKVPNVTDIGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNS 180
L+HVFF+QR T+KVP VTD GL PR ++KVA+IGGGLMGSGIATA IL+N V+LKEVN
Sbjct: 286 LIHVFFSQRGTAKVPGVTDRGLVPRKIKKVAIIGGGLMGSGIATALILSNYPVILKEVNE 345
Query: 181 EYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPL 240
++L GI ++AN++ V +G ++Q+K + +LKG LDY F+DVDMVIEAVIE++ L
Sbjct: 346 KFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSLDYESFRDVDMVIEAVIENISL 405
Query: 241 KQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRT 300
KQ+IF++LEK CP HCILA+NTSTIDLN +GE+T SQDRI+GAHFFSPAH+MPLLEIVRT
Sbjct: 406 KQQIFADLEKYCPQHCILASNTSTIDLNKIGERTKSQDRIVGAHFFSPAHIMPLLEIVRT 465
Query: 301 ERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSA 360
TSAQVI+DL+ NCTGFAVNR FFPY+Q+A LV G D + ID A
Sbjct: 466 NHTSAQVIVDLLDVGKKIKKTPVVVGNCTGFAVNRMFFPYTQAAMFLVECGADPYLIDRA 525
Query: 361 IRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGL 420
I FG+P+GPF+L DL G+GVA AT+ +F + F +R+++S ++ L+ + R G+A KG
Sbjct: 526 ISKFGMPMGPFRLCDLVGFGVAIATATQFIENFSERTYKSMIIPLMQEDKRAGEATRKGF 585
Query: 421 YTYEKGSKPKPDPSVLPIIEECRRLSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEE 480
Y Y+ K KPDP + IE+ R +S + K +++EK+I+EM FPVVNE+CRV E
Sbjct: 586 YLYDDKRKAKPDPELKKYIEKARSISGVKLDPKLANLSEKDIIEMTFFPVVNEACRVFAE 645
Query: 481 GIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLE 540
GI V+A+DLD A ++GM FP YRGGI+FWAD++G+ Y+Y+ L +WS+ YG FFKP FL
Sbjct: 646 GIAVKAADLDIAGIMGMGFPPYRGGIMFWADSIGSKYIYSRLDEWSKAYGEFFKPCAFLA 705
Query: 541 ERATKGI 547
ER +KG+
Sbjct: 706 ERGSKGV 712
>pdb|1WDK|A Chain A, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native2)
pdb|1WDK|B Chain B, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native2)
pdb|1WDL|A Chain A, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form Ii (Native4)
pdb|1WDL|B Chain B, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form Ii (Native4)
pdb|1WDM|A Chain A, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native3)
pdb|1WDM|B Chain B, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native3)
pdb|2D3T|A Chain A, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form V
pdb|2D3T|B Chain B, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form V
Length = 715
Score = 240 bits (613), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 169/558 (30%), Positives = 273/558 (48%), Gaps = 36/558 (6%)
Query: 6 KSITSEEGWKLGLIDAVVTSE-------ELLKVSRLWALDIAARRKPWIRSLHRTDKLGS 58
K +E+ K+ +DAVVT++ +L+K + LD A+R+P + L KL +
Sbjct: 172 KENRAEDALKVSAVDAVVTADKLGAAALDLIKRAISGELDYKAKRQPKLEKL----KLNA 227
Query: 59 LSEAREVLKLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTS 118
+ + A + PN P + I++ G + EA F +L S
Sbjct: 228 IEQMMAFETAKGFVAGQAGPNYPAPVEAIKTIQKAANFGRDKALEVEAAGFAKLAKTSAS 287
Query: 119 RGLVHVFFAQRATSKVPNVTDIGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEV 178
L+ +F + K V D K V++ AV+G G+MG GIA +++K++
Sbjct: 288 NCLIGLFLNDQELKKKAKVYDKIAKD--VKQAAVLGAGIMGGGIAYQSASKGTPILMKDI 345
Query: 179 NSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESV 238
N + +G+ + G V +G++T K L ++ L Y +F +VD+V+EAV+E+
Sbjct: 346 NEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSYGDFGNVDLVVEAVVENP 405
Query: 239 PLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIV 298
+KQ + +E+E ILA+NTSTI ++++ + + +G HFF+P H+MPL+E++
Sbjct: 406 KVKQAVLAEVENHVREDAILASNTSTISISLLAKALKRPENFVGMHFFNPVHMMPLVEVI 465
Query: 299 RTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRID 358
R E++S + + +C GF VNR FPY LVS GVD RID
Sbjct: 466 RGEKSSDLAVATTVAYAKKMGKNPIVVNDCPGFLVNRVLFPYFGGFAKLVSAGVDFVRID 525
Query: 359 SAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDR--SFQSPLVDLLLKSGRNGKAN 416
+ FG P+GP L+D+ G + FPDR + +D L ++ R G+ N
Sbjct: 526 KVMEKFGWPMGPAYLMDVVGIDTGHHGRDVMAEGFPDRMKDDRRSAIDALYEAKRLGQKN 585
Query: 417 GKGLYTYEKGSKPKP----DPSVL----PIIEECRRLSNIMPGGKPISVTEKEIVEMILF 468
GKG Y YE K K D SVL PI+ E R VT+++I+ ++
Sbjct: 586 GKGFYAYEADKKGKQKKLVDSSVLEVLKPIVYEQR------------DVTDEDIINWMMI 633
Query: 469 PVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQL 528
P+ E+ R LE+GIV A++ D V G+ FP +RGG + + D++G ++++L
Sbjct: 634 PLCLETVRCLEDGIVETAAEADMGLVYGIGFPLFRGGALRYIDSIGVAEFVALADQYAEL 693
Query: 529 YGNFFKPSRFLEERATKG 546
G + P+ L E A G
Sbjct: 694 -GALYHPTAKLREMAKNG 710
>pdb|2X58|A Chain A, The Crystal Structure Of Mfe1 Liganded With Coa
pdb|2X58|B Chain B, The Crystal Structure Of Mfe1 Liganded With Coa
Length = 727
Score = 237 bits (604), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 171/566 (30%), Positives = 273/566 (48%), Gaps = 41/566 (7%)
Query: 6 KSITSEEGWKLGLIDAVVTS---EELLKVS-RLWALDIAARR---KPWIRSLHRTDKLGS 58
K ++++E +LG++DAVV S EE +K + ++ I RR KP + S
Sbjct: 160 KYLSADEALRLGILDAVVKSDPVEEAIKFAQKIIDKPIEPRRIFNKP----------VPS 209
Query: 59 LSEAREVLKLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTS 118
L V A + +K P + + C+ I+ + H G+ +E K+F L +
Sbjct: 210 LPNMDSVFAEAIAKVRKQYPGVLAPETCVRSIQASVKHPYEVGIKEEEKLFMYLRASGQA 269
Query: 119 RGLVHVFFAQRATSKVPNVTDIGLK---PRGVRKVAVIGGGLMGSGIATAHILNNIYVVL 175
+ L + FFA+++ +K + K + V V V+G G MG GIA + I VV
Sbjct: 270 KALQYAFFAEKSANKWSTPSGASWKTASAQPVSSVGVLGLGTMGRGIAISFARVGISVVA 329
Query: 176 KEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVI 235
E + + L K I + +R Q+ +A L+ E VD+V+EAV
Sbjct: 330 VESDPKQLDAAKKIITFTLEKEASRAH--QNGQASAKPKLRFSSSTKELSTVDLVVEAVF 387
Query: 236 ESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLL 295
E + LK+K+F+EL C P L TNTS ++++ + T +IG HFFSPAHVM LL
Sbjct: 388 EDMNLKKKVFAELSALCKPGAFLCTNTSALNVDDIASSTDRPQLVIGTHFFSPAHVMRLL 447
Query: 296 EIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVF 355
E++ + +S I +M+ NC GF NR PY L+ G
Sbjct: 448 EVIPSRYSSPTTIATVMSLSKKIGKIGVVVGNCYGFVGNRMLAPYYNQGFFLLEEGSKPE 507
Query: 356 RIDSAIRSFGLPIGPFQLLDLAGYGVA-------AATSKEFDKAFPDR----SFQSPLVD 404
+D + FG +GPF++ DLAG V T P R S SPL D
Sbjct: 508 DVDGVLEEFGFKMGPFRVSDLAGLDVGWKIRKGQGLTGPSLPPGTPVRKRGNSRYSPLGD 567
Query: 405 LLLKSGRNGKANGKGLYTYEK--GSKPKPDPSVLPIIEECRRLSNIMPGGKPISVTEKEI 462
+L ++GR G+ GKG Y Y+K G KPDP + + + R + +I + +++++EI
Sbjct: 568 MLCEAGRFGQKTGKGWYQYDKPLGRIHKPDPWLSTFLSQYREVHHI----EQRTISKEEI 623
Query: 463 VEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSL 522
+E L+ ++NE+ R+LEEG+ R +D + G +P ++GG +F+A +VG V L
Sbjct: 624 LERCLYSLINEAFRILEEGMAARPEHIDVIYLHGYGWPRHKGGPMFYAASVGLPTVLEKL 683
Query: 523 KKWSQLYGNF--FKPSRFLEERATKG 546
+K+ + + +PS +L +G
Sbjct: 684 QKYYRQNPDIPQLEPSDYLRRLVAQG 709
>pdb|3ZW8|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) In Apo Form
pdb|3ZW8|B Chain B, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) In Apo Form
pdb|3ZW9|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
(2s,3s)-3-hydroxy-2- Methylbutanoyl-coa
pdb|3ZW9|B Chain B, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
(2s,3s)-3-hydroxy-2- Methylbutanoyl-coa
pdb|3ZWA|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
3s-hydroxy-hexanoyl-coa
pdb|3ZWA|B Chain B, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
3s-hydroxy-hexanoyl-coa
pdb|3ZWC|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
3s-hydroxy-decanoyl-coa
pdb|3ZWC|B Chain B, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
3s-hydroxy-decanoyl-coa
Length = 742
Score = 237 bits (604), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 171/566 (30%), Positives = 273/566 (48%), Gaps = 41/566 (7%)
Query: 6 KSITSEEGWKLGLIDAVVTS---EELLKVS-RLWALDIAARR---KPWIRSLHRTDKLGS 58
K ++++E +LG++DAVV S EE +K + ++ I RR KP + S
Sbjct: 175 KYLSADEALRLGILDAVVKSDPVEEAIKFAQKIIDKPIEPRRIFNKP----------VPS 224
Query: 59 LSEAREVLKLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTS 118
L V A + +K P + + C+ I+ + H G+ +E K+F L +
Sbjct: 225 LPNMDSVFAEAIAKVRKQYPGVLAPETCVRSIQASVKHPYEVGIKEEEKLFMYLRASGQA 284
Query: 119 RGLVHVFFAQRATSKVPNVTDIGLK---PRGVRKVAVIGGGLMGSGIATAHILNNIYVVL 175
+ L + FFA+++ +K + K + V V V+G G MG GIA + I VV
Sbjct: 285 KALQYAFFAEKSANKWSTPSGASWKTASAQPVSSVGVLGLGTMGRGIAISFARVGISVVA 344
Query: 176 KEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVI 235
E + + L K I + +R Q+ +A L+ E VD+V+EAV
Sbjct: 345 VESDPKQLDAAKKIITFTLEKEASRAH--QNGQASAKPKLRFSSSTKELSTVDLVVEAVF 402
Query: 236 ESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLL 295
E + LK+K+F+EL C P L TNTS ++++ + T +IG HFFSPAHVM LL
Sbjct: 403 EDMNLKKKVFAELSALCKPGAFLCTNTSALNVDDIASSTDRPQLVIGTHFFSPAHVMRLL 462
Query: 296 EIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVF 355
E++ + +S I +M+ NC GF NR PY L+ G
Sbjct: 463 EVIPSRYSSPTTIATVMSLSKKIGKIGVVVGNCYGFVGNRMLAPYYNQGFFLLEEGSKPE 522
Query: 356 RIDSAIRSFGLPIGPFQLLDLAGYGVA-------AATSKEFDKAFPDR----SFQSPLVD 404
+D + FG +GPF++ DLAG V T P R S SPL D
Sbjct: 523 DVDGVLEEFGFKMGPFRVSDLAGLDVGWKIRKGQGLTGPSLPPGTPVRKRGNSRYSPLGD 582
Query: 405 LLLKSGRNGKANGKGLYTYEK--GSKPKPDPSVLPIIEECRRLSNIMPGGKPISVTEKEI 462
+L ++GR G+ GKG Y Y+K G KPDP + + + R + +I + +++++EI
Sbjct: 583 MLCEAGRFGQKTGKGWYQYDKPLGRIHKPDPWLSTFLSQYREVHHI----EQRTISKEEI 638
Query: 463 VEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSL 522
+E L+ ++NE+ R+LEEG+ R +D + G +P ++GG +F+A +VG V L
Sbjct: 639 LERCLYSLINEAFRILEEGMAARPEHIDVIYLHGYGWPRHKGGPMFYAASVGLPTVLEKL 698
Query: 523 KKWSQLYGNF--FKPSRFLEERATKG 546
+K+ + + +PS +L +G
Sbjct: 699 QKYYRQNPDIPQLEPSDYLRRLVAQG 724
>pdb|3ZWB|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
2trans-hexenoyl-coa
pdb|3ZWB|B Chain B, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
2trans-hexenoyl-coa
Length = 742
Score = 237 bits (604), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 171/566 (30%), Positives = 273/566 (48%), Gaps = 41/566 (7%)
Query: 6 KSITSEEGWKLGLIDAVVTS---EELLKVS-RLWALDIAARR---KPWIRSLHRTDKLGS 58
K ++++E +LG++DAVV S EE +K + ++ I RR KP + S
Sbjct: 175 KYLSADEALRLGILDAVVKSDPVEEAIKFAQKIIDKPIEPRRIFNKP----------VPS 224
Query: 59 LSEAREVLKLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTS 118
L V A + +K P + + C+ I+ + H G+ +E K+F L +
Sbjct: 225 LPNMDSVFAEAIAKVRKQYPGVLAPETCVRSIQASVKHPYEVGIKEEEKLFMYLRASGQA 284
Query: 119 RGLVHVFFAQRATSKVPNVTDIGLK---PRGVRKVAVIGGGLMGSGIATAHILNNIYVVL 175
+ L + FFA+++ +K + K + V V V+G G MG GIA + I VV
Sbjct: 285 KALQYAFFAEKSANKWSTPSGASWKTASAQPVSSVGVLGLGTMGRGIAISFARVGISVVA 344
Query: 176 KEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVI 235
E + + L K I + +R Q+ +A L+ E VD+V+EAV
Sbjct: 345 VESDPKQLDAAKKIITFTLEKEASRAH--QNGQASAKPKLRFSSSTKELSTVDLVVEAVF 402
Query: 236 ESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLL 295
E + LK+K+F+EL C P L TNTS ++++ + T +IG HFFSPAHVM LL
Sbjct: 403 EDMNLKKKVFAELSALCKPGAFLCTNTSALNVDDIASSTDRPQLVIGTHFFSPAHVMRLL 462
Query: 296 EIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVF 355
E++ + +S I +M+ NC GF NR PY L+ G
Sbjct: 463 EVIPSRYSSPTTIATVMSLSKKIGKIGVVVGNCYGFVGNRMLAPYYNQGFFLLEEGSKPE 522
Query: 356 RIDSAIRSFGLPIGPFQLLDLAGYGVA-------AATSKEFDKAFPDR----SFQSPLVD 404
+D + FG +GPF++ DLAG V T P R S SPL D
Sbjct: 523 DVDGVLEEFGFKMGPFRVSDLAGLDVGWKIRKGQGLTGPSLPPGTPVRKRGNSRYSPLGD 582
Query: 405 LLLKSGRNGKANGKGLYTYEK--GSKPKPDPSVLPIIEECRRLSNIMPGGKPISVTEKEI 462
+L ++GR G+ GKG Y Y+K G KPDP + + + R + +I + +++++EI
Sbjct: 583 MLCEAGRFGQKTGKGWYQYDKPLGRIHKPDPWLSTFLSQYREVHHI----EQRTISKEEI 638
Query: 463 VEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSL 522
+E L+ ++NE+ R+LEEG+ R +D + G +P ++GG +F+A +VG V L
Sbjct: 639 LERCLYSLINEAFRILEEGMAARPEHIDVIYLHGYGWPRHKGGPMFYAASVGLPTVLEKL 698
Query: 523 KKWSQLYGNF--FKPSRFLEERATKG 546
+K+ + + +PS +L +G
Sbjct: 699 QKYYRQNPDIPQLEPSDYLRRLVAQG 724
>pdb|1ZCJ|A Chain A, Crystal Structure Of 3-Hydroxyacyl-Coa Dehydrogenase
Length = 463
Score = 213 bits (542), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 140/447 (31%), Positives = 220/447 (49%), Gaps = 24/447 (5%)
Query: 118 SRGLVHVFFAQRATSKVPNVTDIGLK---PRGVRKVAVIGGGLMGSGIATAHILNNIYVV 174
++ L + FFA+++ +K + K + V V V+G G MG GIA + I VV
Sbjct: 5 AKALQYAFFAEKSANKWSTPSGASWKTASAQPVSSVGVLGLGTMGRGIAISFARVGISVV 64
Query: 175 LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAV 234
E + + L K I + +R Q+ +A L+ E VD+V+EAV
Sbjct: 65 AVESDPKQLDAAKKIITFTLEKEASRAH--QNGQASAKPKLRFSSSTKELSTVDLVVEAV 122
Query: 235 IESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPL 294
E + LK+K+F+EL C P L TNTS ++++ + T +IG HFFSPAHVM L
Sbjct: 123 FEDMNLKKKVFAELSALCKPGAFLCTNTSALNVDDIASSTDRPQLVIGTHFFSPAHVMRL 182
Query: 295 LEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDV 354
LE++ + +S I +M+ NC GF NR PY L+ G
Sbjct: 183 LEVIPSRYSSPTTIATVMSLSKKIGKIGVVVGNCYGFVGNRMLAPYYNQGFFLLEEGSKP 242
Query: 355 FRIDSAIRSFGLPIGPFQLLDLAGYGVA-------AATSKEFDKAFPDR----SFQSPLV 403
+D + FG +GPF++ DLAG V T P R S SPL
Sbjct: 243 EDVDGVLEEFGFKMGPFRVSDLAGLDVGWKIRKGQGLTGPSLPPGTPVRKRGNSRYSPLG 302
Query: 404 DLLLKSGRNGKANGKGLYTYEK--GSKPKPDPSVLPIIEECRRLSNIMPGGKPISVTEKE 461
D+L ++GR G+ GKG Y Y+K G KPDP + + + R + +I + +++++E
Sbjct: 303 DMLCEAGRFGQKTGKGWYQYDKPLGRIHKPDPWLSTFLSQYREVHHI----EQRTISKEE 358
Query: 462 IVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTS 521
I+E L+ ++NE+ R+LEEG+ R +D + G +P ++GG +F+A +VG V
Sbjct: 359 ILERCLYSLINEAFRILEEGMAARPEHIDVIYLHGYGWPRHKGGPMFYAASVGLPTVLEK 418
Query: 522 LKKWSQLYGNF--FKPSRFLEERATKG 546
L+K+ + + +PS +L +G
Sbjct: 419 LQKYYRQNPDIPQLEPSDYLRRLVAQG 445
>pdb|3K6J|A Chain A, Crystal Structure Of The Dehydrogenase Part Of
Multifuctional Enzyme 1 From C.Elegans
Length = 460
Score = 177 bits (450), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 111/383 (28%), Positives = 184/383 (48%), Gaps = 13/383 (3%)
Query: 147 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD 206
V VA+IGGG MG +A L I L N + + ++ + A + +
Sbjct: 54 VNSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQRCKQELEVMYAREKSFKRLNDKRIE 113
Query: 207 KANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID 266
K N LK+ D+ + + D+++E+VIE + LK+++F+ LE C CI TNTS++D
Sbjct: 114 KINANLKITS---DFHKLSNCDLIVESVIEDMKLKKELFANLENICKSTCIFGTNTSSLD 170
Query: 267 LNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXX 326
LN + ++G HFF+PA+V+ L+EI+ TS+Q I
Sbjct: 171 LNEISSVLRDPSNLVGIHFFNPANVIRLVEIIYGSHTSSQAIATAFQACESIKKLPVLVG 230
Query: 327 NCTGFAVNRAFFPY-SQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAAT 385
NC F NR Y QS +L+ G +ID I +FG +GP + D+ G+ V
Sbjct: 231 NCKSFVFNRLLHVYFDQSQKLMYEYGYLPHQIDKIITNFGFLMGPMTVADMNGFDVMEKL 290
Query: 386 SKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDPSVLPIIEECRRL 445
KE + P+ P+ + + R G+ KG Y Y+ ++ K + + + I RR+
Sbjct: 291 KKE-NGLEPN-----PIEKEMWRLKRYGRKTNKGFYKYDDKTQRKENDTEMEQI--IRRV 342
Query: 446 SNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGG 505
S I + +++++ +L+P VNE R +EEG++ S +D +LG +P + GG
Sbjct: 343 SQNAKSNIQI-INDQDVINFMLYPTVNEGYRCIEEGVISNESLIDIMFILGFGWPIHSGG 401
Query: 506 IVFWADAVGANYVYTSLKKWSQL 528
+ + G + + L WS L
Sbjct: 402 PMRFGKTEGLDKIANMLVHWSSL 424
>pdb|3MOG|A Chain A, Crystal Structure Of 3-Hydroxybutyryl-Coa Dehydrogenase
From Escherichia Coli K12 Substr. Mg1655
pdb|3MOG|B Chain B, Crystal Structure Of 3-Hydroxybutyryl-Coa Dehydrogenase
From Escherichia Coli K12 Substr. Mg1655
pdb|3MOG|C Chain C, Crystal Structure Of 3-Hydroxybutyryl-Coa Dehydrogenase
From Escherichia Coli K12 Substr. Mg1655
Length = 483
Score = 163 bits (412), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 103/281 (36%), Positives = 150/281 (53%), Gaps = 4/281 (1%)
Query: 147 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD 206
V+ VAVIG G MG+GIA + V+L ++++E L + I I A + VTRGKLT +
Sbjct: 5 VQTVAVIGSGTMGAGIAEVAASHGHQVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAE 64
Query: 207 KANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID 266
LK L V D D+VIEA E + +K+ +F++L + CPP +L TNTS+I
Sbjct: 65 TCERTLKRLIPVTDIHALAAADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNTSSIS 124
Query: 267 LNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXX 326
+ + + + +R+ G HFF+PA VM L+E+V T+A+V+ L
Sbjct: 125 ITAIAAEIKNPERVAGLHFFNPAPVMKLVEVVSGLATAAEVVEQLCELTLSWGKQPVRCH 184
Query: 327 NCTGFAVNRAFFP-YSQSARLLVSLGVDVFRIDSAIRS-FGLPIGPFQLLDLAGYGVA-A 383
+ GF VNR P YS++ R L ID+A+R G P+GP +L DL G V A
Sbjct: 185 STPGFIVNRVARPYYSEAWRALEEQVAAPEVIDAALRDGAGFPMGPLELTDLIGQDVNFA 244
Query: 384 ATSKEFDKAFPDRSFQSPLVDL-LLKSGRNGKANGKGLYTY 423
T F+ + +R F LV L+ GR GK +G G+Y +
Sbjct: 245 VTCSVFNAFWQERRFLPSLVQQELVIGGRLGKKSGLGVYDW 285
>pdb|3HAD|A Chain A, Biochemical Characterization And Structure Determination
Of Human Heart Short Chain L-3-Hydroxyacyl Coa
Dehydrogenase Provide Insight Into Catalytic Mechanism
pdb|3HAD|B Chain B, Biochemical Characterization And Structure Determination
Of Human Heart Short Chain L-3-Hydroxyacyl Coa
Dehydrogenase Provide Insight Into Catalytic Mechanism
Length = 308
Score = 137 bits (345), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 94/290 (32%), Positives = 142/290 (48%), Gaps = 14/290 (4%)
Query: 147 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD 206
V+ V VIGGGLMG+GIA VVL + + L K K IE ++R + +
Sbjct: 15 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENP 74
Query: 207 KANNAL--KMLKGVLDYSEFKDV----DMVIEAVIESVPLKQKIFSELEKACPPHCILAT 260
KA + K L + ++ V D+V+EA++E++ +K ++F L+K H I A+
Sbjct: 75 KAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKRAAEHTIFAS 134
Query: 261 NTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXX 320
NTS++ + + T+ QDR G HFF+P VM L+E+++T TS + L+
Sbjct: 135 NTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGK 194
Query: 321 XXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFR--IDSAIR-SFGLPIGPFQLLDLA 377
+ GF VNR PY A L G D + ID+A++ G P+GPF+LLD
Sbjct: 195 HPVSCKDTPGFIVNRLLVPYLMEAIRLYERG-DASKEDIDTAMKLGAGYPMGPFELLDYV 253
Query: 378 GYGVAAATS---KEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYE 424
G E D P SP ++ L+ + GK G+G Y Y+
Sbjct: 254 GLDTTKFIVDGWHEMDAENPLHQ-PSPSLNKLVAENKFGKKTGEGFYKYK 302
>pdb|1F0Y|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With
Acetoacetyl-Coa And Nad+
pdb|1F0Y|B Chain B, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With
Acetoacetyl-Coa And Nad+
Length = 302
Score = 137 bits (344), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 94/290 (32%), Positives = 142/290 (48%), Gaps = 14/290 (4%)
Query: 147 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD 206
V+ V VIGGGLMG+GIA VVL + + L K K IE ++R + +
Sbjct: 15 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENP 74
Query: 207 KANNAL--KMLKGVLDYSEFKDV----DMVIEAVIESVPLKQKIFSELEKACPPHCILAT 260
KA + K L + ++ V D+V+EA++E++ +K ++F L+K H I A+
Sbjct: 75 KAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFAS 134
Query: 261 NTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXX 320
NTS++ + + T+ QDR G HFF+P VM L+E+++T TS + L+
Sbjct: 135 NTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGK 194
Query: 321 XXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFR--IDSAIR-SFGLPIGPFQLLDLA 377
+ GF VNR PY A L G D + ID+A++ G P+GPF+LLD
Sbjct: 195 HPVSCKDTPGFIVNRLLVPYLMEAIRLYERG-DASKEDIDTAMKLGAGYPMGPFELLDYV 253
Query: 378 GYGVAAATS---KEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYE 424
G E D P SP ++ L+ + GK G+G Y Y+
Sbjct: 254 GLDTTKFIVDGWHEMDAENPLHQ-PSPSLNKLVAENKFGKKTGEGFYKYK 302
>pdb|3HDH|A Chain A, Pig Heart Short Chain L-3-Hydroxyacyl Coa Dehydrogenase
Revisited: Sequence Analysis And Crystal Structure
Determination
pdb|3HDH|B Chain B, Pig Heart Short Chain L-3-Hydroxyacyl Coa Dehydrogenase
Revisited: Sequence Analysis And Crystal Structure
Determination
pdb|3HDH|C Chain C, Pig Heart Short Chain L-3-Hydroxyacyl Coa Dehydrogenase
Revisited: Sequence Analysis And Crystal Structure
Determination
Length = 302
Score = 136 bits (343), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 94/290 (32%), Positives = 144/290 (49%), Gaps = 14/290 (4%)
Query: 147 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD 206
V+ V VIGGGLMG+GIA VVL + + L K K IE ++R + +
Sbjct: 15 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENP 74
Query: 207 KANNAL--KMLKGVLDYSEFKDV----DMVIEAVIESVPLKQKIFSELEKACPPHCILAT 260
KA + K L + ++ V D+V+EA++E++ +K ++F L+K H I A+
Sbjct: 75 KAGDEFVEKTLSSISTSTDAASVVHSTDLVVEAIVENLKVKSELFKRLDKFAAEHTIFAS 134
Query: 261 NTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXX 320
NTS++ + + T+ QDR G HFF+P +M L+E+V+T TS + + L+
Sbjct: 135 NTSSLQITSLANATTRQDRFAGLHFFNPVPLMKLVEVVKTPMTSQKTLESLVDFSKTLGK 194
Query: 321 XXXXXXNCTGFAVNRAFFPY-SQSARLLVSLGVDVFRIDSAIR-SFGLPIGPFQLLDLAG 378
+ GF VNR PY ++ RL ID+A++ G P+GPF+LLD G
Sbjct: 195 HPVSCKDTPGFIVNRLLVPYLIEAVRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVG 254
Query: 379 YGVAAATS---KEFDKAFPDRSFQ-SPLVDLLLKSGRNGKANGKGLYTYE 424
E D P FQ SP ++ L+ + GK G+G Y Y+
Sbjct: 255 LDTTKFIIDGWHEMDSQNP--LFQPSPAMNKLVAENKFGKKTGEGFYKYK 302
>pdb|1F12|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With 3-
Hydroxybutyryl-Coa
pdb|1F12|B Chain B, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With 3-
Hydroxybutyryl-Coa
pdb|1F14|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase (Apo)
pdb|1F14|B Chain B, L-3-Hydroxyacyl-Coa Dehydrogenase (Apo)
pdb|1F17|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With Nadh
pdb|1F17|B Chain B, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With Nadh
Length = 310
Score = 136 bits (343), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 94/290 (32%), Positives = 142/290 (48%), Gaps = 14/290 (4%)
Query: 147 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD 206
V+ V VIGGGLMG+GIA VVL + + L K K IE ++R + +
Sbjct: 15 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENP 74
Query: 207 KANNAL--KMLKGVLDYSEFKDV----DMVIEAVIESVPLKQKIFSELEKACPPHCILAT 260
KA + K L + ++ V D+V+EA++E++ +K ++F L+K H I A+
Sbjct: 75 KAGDECVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFAS 134
Query: 261 NTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXX 320
NTS++ + + T+ QDR G HFF+P VM L+E+++T TS + L+
Sbjct: 135 NTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGK 194
Query: 321 XXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFR--IDSAIR-SFGLPIGPFQLLDLA 377
+ GF VNR PY A L G D + ID+A++ G P+GPF+LLD
Sbjct: 195 HPVSCKDTPGFIVNRLLVPYLMEAIRLYERG-DASKEDIDTAMKLGAGYPMGPFELLDYV 253
Query: 378 GYGVAAATS---KEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYE 424
G E D P SP ++ L+ + GK G+G Y Y+
Sbjct: 254 GLDTTKFIVDGWHEMDAENPLHQ-PSPSLNKLVAENKFGKKTGEGFYKYK 302
>pdb|1LSO|A Chain A, Crystal Structure Of The S137a Mutant Of L-3-Hydroxyacyl-
Coa Dehydrogenase In Complex With Nad
pdb|1LSO|B Chain B, Crystal Structure Of The S137a Mutant Of L-3-Hydroxyacyl-
Coa Dehydrogenase In Complex With Nad
Length = 302
Score = 135 bits (341), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 93/290 (32%), Positives = 142/290 (48%), Gaps = 14/290 (4%)
Query: 147 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD 206
V+ V VIGGGLMG+GIA VVL + + L K K IE ++R + +
Sbjct: 15 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENP 74
Query: 207 KANNAL--KMLKGVLDYSEFKDV----DMVIEAVIESVPLKQKIFSELEKACPPHCILAT 260
KA + K L + ++ V D+V+EA++E++ +K ++F L+K H I A+
Sbjct: 75 KAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFAS 134
Query: 261 NTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXX 320
NT+++ + + T+ QDR G HFF+P VM L+E+++T TS + L+
Sbjct: 135 NTASLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGK 194
Query: 321 XXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFR--IDSAIR-SFGLPIGPFQLLDLA 377
+ GF VNR PY A L G D + ID+A++ G P+GPF+LLD
Sbjct: 195 HPVSCKDTPGFIVNRLLVPYLMEAIRLYERG-DASKEDIDTAMKLGAGYPMGPFELLDYV 253
Query: 378 GYGVAAATS---KEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYE 424
G E D P SP ++ L+ + GK G+G Y Y+
Sbjct: 254 GLDTTKFIVDGWHEMDAENPLHQ-PSPSLNKLVAENKFGKKTGEGFYKYK 302
>pdb|1LSJ|A Chain A, Crystal Structure Of The E110q Mutant Of L-3-hydroxyacyl-
Coa Dehydrogenase In Complex With Nad
pdb|1LSJ|B Chain B, Crystal Structure Of The E110q Mutant Of L-3-hydroxyacyl-
Coa Dehydrogenase In Complex With Nad
Length = 302
Score = 135 bits (341), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 93/290 (32%), Positives = 142/290 (48%), Gaps = 14/290 (4%)
Query: 147 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD 206
V+ V VIGGGLMG+GIA VVL + + L K K IE ++R + +
Sbjct: 15 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENP 74
Query: 207 KANNAL--KMLKGVLDYSEFKDV----DMVIEAVIESVPLKQKIFSELEKACPPHCILAT 260
KA + K L + ++ V D+V+EA+++++ +K ++F L+K H I A+
Sbjct: 75 KAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVQNLKVKNELFKRLDKFAAEHTIFAS 134
Query: 261 NTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXX 320
NTS++ + + T+ QDR G HFF+P VM L+E+++T TS + L+
Sbjct: 135 NTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGK 194
Query: 321 XXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFR--IDSAIR-SFGLPIGPFQLLDLA 377
+ GF VNR PY A L G D + ID+A++ G P+GPF+LLD
Sbjct: 195 HPVSCKDTPGFIVNRLLVPYLMEAIRLYERG-DASKEDIDTAMKLGAGYPMGPFELLDYV 253
Query: 378 GYGVAAATS---KEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYE 424
G E D P SP ++ L+ + GK G+G Y Y+
Sbjct: 254 GLDTTKFIVDGWHEMDAENPLHQ-PSPSLNKLVAENKFGKKTGEGFYKYK 302
>pdb|1IL0|A Chain A, X-Ray Crystal Structure Of The E170q Mutant Of Human L-3-
Hydroxyacyl-Coa Dehydrogenase
pdb|1IL0|B Chain B, X-Ray Crystal Structure Of The E170q Mutant Of Human L-3-
Hydroxyacyl-Coa Dehydrogenase
Length = 302
Score = 135 bits (341), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 93/290 (32%), Positives = 142/290 (48%), Gaps = 14/290 (4%)
Query: 147 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD 206
V+ V VIGGGLMG+GIA VVL + + L K K IE ++R + +
Sbjct: 15 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENP 74
Query: 207 KANNAL--KMLKGVLDYSEFKDV----DMVIEAVIESVPLKQKIFSELEKACPPHCILAT 260
KA + K L + ++ V D+V+EA++E++ +K ++F L+K H I A+
Sbjct: 75 KAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFAS 134
Query: 261 NTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXX 320
NTS++ + + T+ QDR G HFF+P VM L+++++T TS + L+
Sbjct: 135 NTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVQVIKTPMTSQKTFESLVDFSKALGK 194
Query: 321 XXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFR--IDSAIR-SFGLPIGPFQLLDLA 377
+ GF VNR PY A L G D + ID+A++ G P+GPF+LLD
Sbjct: 195 HPVSCKDTPGFIVNRLLVPYLMEAIRLYERG-DASKEDIDTAMKLGAGYPMGPFELLDYV 253
Query: 378 GYGVAAATS---KEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYE 424
G E D P SP ++ L+ + GK G+G Y Y+
Sbjct: 254 GLDTTKFIVDGWHEMDAENPLHQ-PSPSLNKLVAENKFGKKTGEGFYKYK 302
>pdb|1M76|A Chain A, Crystal Structure Of The S137c Mutant Of L-3-Hydroxyacyl-
Coa Dehydrogenase In Complex With Nad And
Acetoacetyl-Coa
pdb|1M76|B Chain B, Crystal Structure Of The S137c Mutant Of L-3-Hydroxyacyl-
Coa Dehydrogenase In Complex With Nad And
Acetoacetyl-Coa
Length = 302
Score = 135 bits (339), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 93/290 (32%), Positives = 141/290 (48%), Gaps = 14/290 (4%)
Query: 147 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD 206
V+ V VIGGGLMG+GIA VVL + + L K K IE ++R + +
Sbjct: 15 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENP 74
Query: 207 KANNAL--KMLKGVLDYSEFKDV----DMVIEAVIESVPLKQKIFSELEKACPPHCILAT 260
KA + K L + ++ V D+V+EA++E++ +K ++F L+K H I A+
Sbjct: 75 KAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFAS 134
Query: 261 NTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXX 320
NT ++ + + T+ QDR G HFF+P VM L+E+++T TS + L+
Sbjct: 135 NTCSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGK 194
Query: 321 XXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFR--IDSAIR-SFGLPIGPFQLLDLA 377
+ GF VNR PY A L G D + ID+A++ G P+GPF+LLD
Sbjct: 195 HPVSCKDTPGFIVNRLLVPYLMEAIRLYERG-DASKEDIDTAMKLGAGYPMGPFELLDYV 253
Query: 378 GYGVAAATS---KEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYE 424
G E D P SP ++ L+ + GK G+G Y Y+
Sbjct: 254 GLDTTKFIVDGWHEMDAENPLHQ-PSPSLNKLVAENKFGKKTGEGFYKYK 302
>pdb|1M75|A Chain A, Crystal Structure Of The N208s Mutant Of L-3-Hydroxyacyl-
Coa Dehydrogenase In Complex With Nad And
Acetoacetyl-Coa
pdb|1M75|B Chain B, Crystal Structure Of The N208s Mutant Of L-3-Hydroxyacyl-
Coa Dehydrogenase In Complex With Nad And
Acetoacetyl-Coa
Length = 302
Score = 134 bits (338), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 93/290 (32%), Positives = 142/290 (48%), Gaps = 14/290 (4%)
Query: 147 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD 206
V+ V VIGGGLMG+GIA VVL + + L K K IE ++R + +
Sbjct: 15 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENP 74
Query: 207 KANNAL--KMLKGVLDYSEFKDV----DMVIEAVIESVPLKQKIFSELEKACPPHCILAT 260
KA + K L + ++ V D+V+EA++E++ +K ++F L+K H I A+
Sbjct: 75 KAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFAS 134
Query: 261 NTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXX 320
NTS++ + + T+ QDR G HFF+P VM L+E+++T TS + L+
Sbjct: 135 NTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGK 194
Query: 321 XXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFR--IDSAIR-SFGLPIGPFQLLDLA 377
+ GF V+R PY A L G D + ID+A++ G P+GPF+LLD
Sbjct: 195 HPVSCKDTPGFIVSRLLVPYLMEAIRLYERG-DASKEDIDTAMKLGAGYPMGPFELLDYV 253
Query: 378 GYGVAAATS---KEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYE 424
G E D P SP ++ L+ + GK G+G Y Y+
Sbjct: 254 GLDTTKFIVDGWHEMDAENPLHQ-PSPSLNKLVAENKFGKKTGEGFYKYK 302
>pdb|2HDH|A Chain A, Biochemical Characterization And Structure Determination
Of Human Heart Short Chain L-3-Hydroxyacyl Coa
Dehydrogenase Provide Insight Into Catalytic Mechanism
pdb|2HDH|B Chain B, Biochemical Characterization And Structure Determination
Of Human Heart Short Chain L-3-Hydroxyacyl Coa
Dehydrogenase Provide Insight Into Catalytic Mechanism
Length = 293
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 83/274 (30%), Positives = 127/274 (46%), Gaps = 19/274 (6%)
Query: 163 ATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNAL--KMLKGVLD 220
AT H VVL + + L K K IE ++R + + KA + K L +
Sbjct: 25 ATGHT-----VVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVAKTLSTIAT 79
Query: 221 YSEFKDV----DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSS 276
++ V D+V+EA++E++ +K ++F L+K H I A+NTS++ + + T+
Sbjct: 80 STDAASVVHSTDLVVEAIVENLKVKNELFKRLDKRAAEHTIFASNTSSLQITSIANATTR 139
Query: 277 QDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRA 336
QDR G HFF+P V L+E+++T TS + L+ + GF VNR
Sbjct: 140 QDRFAGLHFFNPVPVXKLVEVIKTPXTSQKTFESLVDFSKALGKHPVSCKDTPGFIVNRL 199
Query: 337 FFPYSQSARLLVSLGVDVFR--IDSAIR-SFGLPIGPFQLLDLAGYGVAAATS---KEFD 390
PY A L G D + ID+A + G P GPF+LLD G E D
Sbjct: 200 LVPYLXEAIRLYERG-DASKEDIDTAXKLGAGYPXGPFELLDYVGLDTTKFIVDGWHEXD 258
Query: 391 KAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYE 424
P SP ++ L+ + GK G+G Y Y+
Sbjct: 259 AENPLHQ-PSPSLNKLVAENKFGKKTGEGFYKYK 291
>pdb|3RQS|A Chain A, Crystal Structure Of Human L-3- Hydroxyacyl-Coa
Dehydrogenase (Ec1.1.1.35) From Mitochondria At The
Resolution 2.0 A, Northeast Structural Genomics
Consortium Target Hr487, Mitochondrial Protein
Partnership
pdb|3RQS|B Chain B, Crystal Structure Of Human L-3- Hydroxyacyl-Coa
Dehydrogenase (Ec1.1.1.35) From Mitochondria At The
Resolution 2.0 A, Northeast Structural Genomics
Consortium Target Hr487, Mitochondrial Protein
Partnership
Length = 324
Score = 110 bits (274), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 83/274 (30%), Positives = 127/274 (46%), Gaps = 19/274 (6%)
Query: 163 ATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNAL--KMLKGVLD 220
AT H VVL + + L K K IE ++R + + KA + K L +
Sbjct: 58 ATGHT-----VVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIAT 112
Query: 221 YSEFKDV----DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSS 276
++ V D+V+EA++E++ +K ++F L+K H I A+NTS++ + + T+
Sbjct: 113 STDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIANATTR 172
Query: 277 QDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRA 336
QDR G HFF+P V L+E+++T TS + L+ + GF VNR
Sbjct: 173 QDRFAGLHFFNPVPVXKLVEVIKTPXTSQKTFESLVDFSKALGKHPVSCKDTPGFIVNRL 232
Query: 337 FFPYSQSARLLVSLGVDVFR--IDSAIR-SFGLPIGPFQLLDLAGYGVAAATS---KEFD 390
PY A L G D + ID+A + G P GPF+LLD G E D
Sbjct: 233 LVPYLXEAIRLYERG-DASKEDIDTAXKLGAGYPXGPFELLDYVGLDTTKFIVDGWHEXD 291
Query: 391 KAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYE 424
P SP ++ L+ + GK G+G Y Y+
Sbjct: 292 AENPLHQ-PSPSLNKLVAENKFGKKTGEGFYKYK 324
>pdb|4DYD|A Chain A, Substrate-Directed Dual Catalysis Of Dicarbonyl Compounds
By Diketoreductase
pdb|4E12|A Chain A, Substrate-Directed Dual Catalysis Of Dicarbonyl Compounds
By Diketoreductase
pdb|4E13|A Chain A, Substrate-Directed Dual Catalysis Of Dicarbonyl Compounds
By Diketoreductase
Length = 283
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 83/292 (28%), Positives = 132/292 (45%), Gaps = 25/292 (8%)
Query: 146 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVT-RGKLT 204
G+ V V+G G++GS IA + V ++N++ L K E GL K
Sbjct: 3 GITNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTDALDAAKKRFE----GLAAVYEKEV 58
Query: 205 QDKANNALKMLKGVLDYSE-----FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA 259
A+ A + G + YS+ KD D+VIEAV ES+ LK+ I+++L + P I A
Sbjct: 59 AGAADGAAQKALGGIRYSDDLAQAVKDADLVIEAVPESLDLKRDIYTKLGELAPAKTIFA 118
Query: 260 TNTST-IDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXX 318
TN+ST + ++VG T D+ + HF + V E++ T +T +V ++
Sbjct: 119 TNSSTLLPSDLVG-YTGRGDKFLALHFANHVWVNNTAEVMGTTKTDPEVYQQVVEFASAI 177
Query: 319 XXX-XXXXXNCTGFAVNRAFFP-YSQSARLLVSLGVDVFRIDSAIR-SFGLPIGPFQLLD 375
G+ +N P +A LLV D ID R G P GPF++ D
Sbjct: 178 GMVPIELKKEKAGYVLNSLLVPLLDAAAELLVDGIADPETIDKTWRIGTGAPKGPFEIFD 237
Query: 376 LAG----YGVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTY 423
+ G Y +++ + + R F + L + + G+ G A G+G Y Y
Sbjct: 238 IVGLTTAYNISSVSGPK------QREFAAYLKENYIDKGKLGLATGEGFYRY 283
>pdb|1ZEJ|A Chain A, Crystal Structure Of The 3-Hydroxyacyl-Coa Dehydrogenase
(Hbd-9, Af2017) From Archaeoglobus Fulgidus Dsm 4304 At
2.00 A Resolution
Length = 293
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 85/281 (30%), Positives = 125/281 (44%), Gaps = 29/281 (10%)
Query: 149 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKA 208
KV VIG GL G GIA A I + VVL++V+ K +EA R + L++ +
Sbjct: 14 KVFVIGAGLXGRGIAIA-IASKHEVVLQDVSE-------KALEA-AREQIPEELLSKIEF 64
Query: 209 NNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN 268
L+ +K D D+V EAV E + K ++ E+E+ + L +NTS I ++
Sbjct: 65 TTTLEKVK---------DCDIVXEAVFEDLNTKVEVLREVERLT--NAPLCSNTSVISVD 113
Query: 269 IVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNC 328
+ E+ S R +G H+ +P HV PL+EIV + T ++ + + C
Sbjct: 114 DIAERLDSPSRFLGVHWXNPPHVXPLVEIVISRFTDSKTVAFVEGFLRELGKEVVV---C 170
Query: 329 TGFA-VNRAFFPYSQSARLLVSLGVDVFRIDSAIR-SFGL---PIGPFQLLDLAGYGVAA 383
G + VNR A + GV +D + GL GP LD G VA
Sbjct: 171 KGQSLVNRFNAAVLSEASRXIEEGVRAEDVDRVWKHHLGLLYTLFGPLGNLDYIGLDVAY 230
Query: 384 ATSKEFDKAFPDRSFQSP-LVDLLLKSGRNGKANGKGLYTY 423
S K F D F+ P + +K G G GKG+Y Y
Sbjct: 231 YASLYLYKRFGDEKFKPPEWLQEKIKKGEVGVKAGKGIYEY 271
Score = 32.0 bits (71), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 7/80 (8%)
Query: 470 VVNESCRVLEEGIVVRASDLDDA--SVLGMSFPSYRGGIVFWADAVGANYVY-TSLKKWS 526
V++E+ R +EEG VRA D+D LG+ + + G + D +G + Y SL +
Sbjct: 183 VLSEASRXIEEG--VRAEDVDRVWKHHLGLLYTLF--GPLGNLDYIGLDVAYYASLYLYK 238
Query: 527 QLYGNFFKPSRFLEERATKG 546
+ FKP +L+E+ KG
Sbjct: 239 RFGDEKFKPPEWLQEKIKKG 258
>pdb|3F3S|A Chain A, The Crystal Structure Of Human Lambda-Crystallin, Cryl1
pdb|3F3S|B Chain B, The Crystal Structure Of Human Lambda-Crystallin, Cryl1
Length = 313
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 57/248 (22%), Positives = 100/248 (40%), Gaps = 12/248 (4%)
Query: 150 VAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD-KA 208
V ++G G++G A V L ++ + + ++ I ++ L G L
Sbjct: 6 VVIVGSGVIGRSWAMLFASGGFQVKLYDIEQQQIRNALENIRKEMKLLEQAGSLKGSLSV 65
Query: 209 NNALKMLKGVLDYSEFKDVDMVI-EAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL 267
L ++ G + E + M I E V E + LK+KIF++L+ IL+++TS +
Sbjct: 66 EEQLSLISGCPNIQEAVEGAMHIQECVPEDLELKKKIFAQLDSIIDDRVILSSSTSCLMP 125
Query: 268 NIVGEKTSSQDRIIGAHFFSPAHVMPLLEIV---RTERTSAQVILDLMTXXXXXXXXXXX 324
+ + + I AH +P + +PL+E+V T T+ LM
Sbjct: 126 SKLFAGLVHVKQCIVAHPVNPPYYIPLVELVPHPETAPTTVDRTHALMK--KIGQCPMRV 183
Query: 325 XXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLP-----IGPFQLLDLAGY 379
GF +NR + A LV G+ + S GL IGP + + L
Sbjct: 184 QKEVAGFVLNRLQYAIISEAWRLVEEGIVSPSDLDLVMSEGLGMRYAFIGPLETMHLNAE 243
Query: 380 GVAAATSK 387
G+ + +
Sbjct: 244 GMLSYCDR 251
>pdb|3ADO|A Chain A, Crystal Structure Of The Rabbit L-Gulonate 3-Dehydrogenase
pdb|3ADP|A Chain A, Crystal Structure Of The Rabbit L-Gulonate 3-Dehydrogenase
(
Length = 319
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 54/241 (22%), Positives = 99/241 (41%), Gaps = 10/241 (4%)
Query: 150 VAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD-KA 208
V ++G GL+G A V L ++ + ++ I ++ L G L A
Sbjct: 9 VLIVGSGLVGRSWAMLFASGGFRVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSA 68
Query: 209 NNALKMLKGVLDYSE-FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL 267
L ++ + +E + V + E V E++ LK+KIF++L+ +L++++S +
Sbjct: 69 EEQLSLISSCTNLAEAVEGVVHIQECVPENLDLKRKIFAQLDSIVDDRVVLSSSSSCLLP 128
Query: 268 NIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTS-AQVILDLMTXXXXXXXXXXXXX 326
+ + + + I AH +P + +PL+E+V TS A V
Sbjct: 129 SKLFTGLAHVKQCIVAHPVNPPYYIPLVELVPHPETSPATVDRTHALMRKIGQSPVRVLK 188
Query: 327 NCTGFAVNRAFFPYSQSARLLVSLGV------DVFRIDSAIRSFGLPIGPFQLLDLAGYG 380
GF +NR + A LV G+ D+ D + IGP + + L G
Sbjct: 189 EIDGFVLNRLQYAIISEAWRLVEEGIVSPSDLDLVMSDGLGMRYAF-IGPLETMHLNAEG 247
Query: 381 V 381
+
Sbjct: 248 M 248
>pdb|3Q7J|A Chain A, Engineered Thermoplasma Acidophilum F3 Factor Mimics Human
Aminopeptidase N (Apn) As A Target For Anticancer Drug
Development
pdb|3Q7J|B Chain B, Engineered Thermoplasma Acidophilum F3 Factor Mimics Human
Aminopeptidase N (Apn) As A Target For Anticancer Drug
Development
Length = 780
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 52/95 (54%), Gaps = 9/95 (9%)
Query: 158 MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG 217
M S IATA+ L + LK + ++ + + E VR + GKL K+N L + G
Sbjct: 621 MRSSIATAYAL--VTGDLKGLLEKF--RSVDRDEDRVRIISAFGKL---KSNTDLSTVYG 673
Query: 218 VLDYSEFKDVDMV--IEAVIESVPLKQKIFSELEK 250
+++ +E K DM+ + +E++P ++ IF+ L++
Sbjct: 674 MVEKTEIKKQDMISFFSSALETLPGREFIFANLDR 708
>pdb|1Z1W|A Chain A, Crystal Structures Of The Tricorn Interacting Facor F3
From Thermoplasma Acidophilum, A Zinc Aminopeptidase In
Three Different Conformations
pdb|1Z5H|A Chain A, Crystal Structures Of The Tricorn Interacting Factor F3
From Thermoplasma Acidophilum
pdb|1Z5H|B Chain B, Crystal Structures Of The Tricorn Interacting Factor F3
From Thermoplasma Acidophilum
Length = 780
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 52/95 (54%), Gaps = 9/95 (9%)
Query: 158 MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG 217
M S IATA+ L + LK + ++ + + E VR + GKL K+N L + G
Sbjct: 621 MRSSIATAYAL--VTGDLKGLLEKF--RSVDRDEDRVRIISAFGKL---KSNTDLSTVYG 673
Query: 218 VLDYSEFKDVDMV--IEAVIESVPLKQKIFSELEK 250
+++ +E K DM+ + +E++P ++ IF+ L++
Sbjct: 674 MVEKTEIKKQDMISFFSSALETLPGREFIFANLDR 708
>pdb|3HL2|A Chain A, The Crystal Structure Of The Human Sepsecs-Trnasec Complex
pdb|3HL2|B Chain B, The Crystal Structure Of The Human Sepsecs-Trnasec Complex
pdb|3HL2|C Chain C, The Crystal Structure Of The Human Sepsecs-Trnasec Complex
pdb|3HL2|D Chain D, The Crystal Structure Of The Human Sepsecs-Trnasec Complex
Length = 501
Score = 32.3 bits (72), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 12/88 (13%)
Query: 333 VNRAFFPYSQSARLLVSLGVDVFRIDSAIRS----FGLPIGPFQLLDLAGYGVAAATSKE 388
VN A+ S L+ G V RID+ ++S F +P+G +AG+ + +E
Sbjct: 251 VNNAYGVQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGG---AIIAGFN--DSFIQE 305
Query: 389 FDKAFPDRSFQSPLVDL---LLKSGRNG 413
K +P R+ SP +D+ LL G NG
Sbjct: 306 ISKMYPGRASASPSLDVLITLLSLGSNG 333
>pdb|3QRE|A Chain A, Crystal Structure Of An Enoyl-Coa Hydratase Echa12_1 From
Mycobacterium Marinum
Length = 298
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 27/45 (60%)
Query: 1 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKP 45
++L ++ +EE +LGL+ VVT E+L+ + +A DIA P
Sbjct: 194 LLLSGRTFLAEEAAQLGLVKEVVTPEQLMPRALEYAEDIARYCSP 238
>pdb|3UL5|A Chain A, Saccharum Officinarum Canecystatin-1 In Space Group C2221
pdb|3UL5|B Chain B, Saccharum Officinarum Canecystatin-1 In Space Group C2221
pdb|3UL5|C Chain C, Saccharum Officinarum Canecystatin-1 In Space Group C2221
pdb|3UL5|D Chain D, Saccharum Officinarum Canecystatin-1 In Space Group C2221
pdb|3UL6|A Chain A, Saccharum Officinarum Canecystatin-1 In Space Group P6422
pdb|3UL6|B Chain B, Saccharum Officinarum Canecystatin-1 In Space Group P6422
Length = 139
Score = 30.4 bits (67), Expect = 2.9, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 141 GLKPRGVRKVAVIGGGLMGSGIATAH 166
GL PRG ++ GG MG G+A AH
Sbjct: 13 GLVPRGSHMASMTGGQQMGRGMAEAH 38
>pdb|2IEX|A Chain A, Crystal Structure Of Dihydroxynapthoic Acid Synthetase
(Gk2873) From Geobacillus Kaustophilus Hta426
pdb|2IEX|B Chain B, Crystal Structure Of Dihydroxynapthoic Acid Synthetase
(Gk2873) From Geobacillus Kaustophilus Hta426
pdb|2IEX|C Chain C, Crystal Structure Of Dihydroxynapthoic Acid Synthetase
(Gk2873) From Geobacillus Kaustophilus Hta426
Length = 272
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 28/50 (56%)
Query: 1 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSL 50
+ L + T++E ++GL++ VV E+L + + WA +I + IR L
Sbjct: 170 IWYLCRQYTAQEALEMGLVNKVVPLEQLEEETVKWAQEILEKSPTAIRFL 219
>pdb|3BC8|A Chain A, Crystal Structure Of Mouse Selenocysteine Synthase
pdb|3BCA|A Chain A, Crystal Structure Of Mouse Selenocysteine Synthase, Sodium
Iodide Soak
pdb|3BCB|A Chain A, Crystal Structure Of Mouse Selenocysteine Synthase, Sodium
Phosphate Soak
Length = 450
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 9/79 (11%)
Query: 333 VNRAFFPYSQSARLLVSLGVDVFRIDSAIRS----FGLPIGPFQLLDLAGYGVAAATSKE 388
VN A+ S L+ G V RID+ ++S F +P+G +AG+ ++
Sbjct: 233 VNNAYGLQSSKCMHLIQQGARVGRIDAFVQSLDXNFMVPVGG---AIIAGFN--EPFIQD 287
Query: 389 FDKAFPDRSFQSPLVDLLL 407
K +P R+ SP +D+L+
Sbjct: 288 ISKMYPGRASASPSLDVLI 306
>pdb|1ZZM|A Chain A, Crystal Structure Of Yjjv, Tatd Homolog From Escherichia
Coli K12, At 1.8 A Resolution
Length = 259
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 8/56 (14%)
Query: 64 EVLKLAR-------LQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKEL 112
E LKLA+ L +++T + H D+ G+VH G+SG L++A+ F +L
Sbjct: 118 EQLKLAKRYDLPVILHSRRTHDKLAMHLKRHDLPRTGVVH-GFSGSLQQAERFVQL 172
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 48/91 (52%), Gaps = 5/91 (5%)
Query: 165 AHILNNI-YVVLKEVN---SEYLLKGIKTIEANVRGLVTRGK-LTQDKANNALKMLKGVL 219
A IL+++ Y+ L++ N ++ + + + ++ L RG LT + N LK+L+ +L
Sbjct: 218 ADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYIL 277
Query: 220 DYSEFKDVDMVIEAVIESVPLKQKIFSELEK 250
+ SE + D + + + P + + SEL K
Sbjct: 278 ELSEVEFDDCTLNGLGDFNPSESDVVSELGK 308
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 48/91 (52%), Gaps = 5/91 (5%)
Query: 165 AHILNNI-YVVLKEVN---SEYLLKGIKTIEANVRGLVTRGK-LTQDKANNALKMLKGVL 219
A IL+++ Y+ L++ N ++ + + + ++ L RG LT + N LK+L+ +L
Sbjct: 192 ADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYIL 251
Query: 220 DYSEFKDVDMVIEAVIESVPLKQKIFSELEK 250
+ SE + D + + + P + + SEL K
Sbjct: 252 ELSEVEFDDCTLNGLGDFNPSESDVVSELGK 282
>pdb|3EF6|A Chain A, Crystal Structure Of Toluene 2,3-Dioxygenase Reductase
pdb|4EMI|A Chain A, Toluene Dioxygenase Reductase In Reduced State In Complex
With Nad+
pdb|4EMJ|A Chain A, Complex Between The Reductase And Ferredoxin Components Of
Toluene Dioxygenase
Length = 410
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 149 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGI-KTIEANVRGLVT 199
++ ++GGGL+G +AT + V + E E L++ + + I A +RGL+T
Sbjct: 145 RLLIVGGGLIGCEVATTARKLGLSVTILEAGDELLVRVLGRRIGAWLRGLLT 196
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,142,022
Number of Sequences: 62578
Number of extensions: 622170
Number of successful extensions: 2011
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1911
Number of HSP's gapped (non-prelim): 45
length of query: 563
length of database: 14,973,337
effective HSP length: 104
effective length of query: 459
effective length of database: 8,465,225
effective search space: 3885538275
effective search space used: 3885538275
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)