Query 008509
Match_columns 563
No_of_seqs 518 out of 4088
Neff 8.5
Searched_HMMs 46136
Date Thu Mar 28 13:03:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008509.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008509hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02441 fa_ox_alpha_mit fatt 100.0 8E-107 2E-111 903.3 60.5 540 1-550 174-737 (737)
2 TIGR02437 FadB fatty oxidation 100.0 2E-104 5E-109 882.2 61.0 537 1-550 166-714 (714)
3 TIGR02440 FadJ fatty oxidation 100.0 4E-102 8E-107 864.9 59.9 533 1-550 162-699 (699)
4 PRK11154 fadJ multifunctional 100.0 8E-102 2E-106 864.6 59.6 534 1-551 167-707 (708)
5 PRK11730 fadB multifunctional 100.0 3E-101 6E-106 859.7 61.3 538 1-551 166-715 (715)
6 TIGR02279 PaaC-3OHAcCoADH 3-hy 100.0 3.9E-80 8.5E-85 661.7 45.8 402 146-551 4-503 (503)
7 PRK08268 3-hydroxy-acyl-CoA de 100.0 1.8E-78 3.9E-83 651.1 46.3 404 144-551 4-504 (507)
8 COG1250 FadB 3-hydroxyacyl-CoA 100.0 4E-70 8.7E-75 540.2 31.5 280 146-425 2-285 (307)
9 KOG2304 3-hydroxyacyl-CoA dehy 100.0 7.3E-69 1.6E-73 489.2 19.6 280 145-424 9-298 (298)
10 KOG1683 Hydroxyacyl-CoA dehydr 100.0 4.1E-67 8.8E-72 513.9 18.2 378 158-551 1-380 (380)
11 PRK07819 3-hydroxybutyryl-CoA 100.0 3.5E-63 7.6E-68 498.1 33.6 279 145-423 3-286 (286)
12 PRK08293 3-hydroxybutyryl-CoA 100.0 4.6E-58 9.9E-63 463.4 34.0 279 146-424 2-287 (287)
13 PRK09260 3-hydroxybutyryl-CoA 100.0 4.3E-57 9.3E-62 456.7 34.2 280 147-426 1-283 (288)
14 PRK06035 3-hydroxyacyl-CoA deh 100.0 4.4E-57 9.6E-62 457.3 33.3 278 146-423 2-290 (291)
15 PRK05808 3-hydroxybutyryl-CoA 100.0 5.7E-57 1.2E-61 454.7 33.1 278 146-423 2-282 (282)
16 PLN02545 3-hydroxybutyryl-CoA 100.0 2.1E-56 4.6E-61 453.4 34.7 282 146-427 3-287 (295)
17 PRK07530 3-hydroxybutyryl-CoA 100.0 3.8E-56 8.3E-61 450.9 33.8 281 146-426 3-286 (292)
18 PRK08269 3-hydroxybutyryl-CoA 100.0 4.6E-55 1E-59 443.4 32.0 268 158-425 1-284 (314)
19 PRK07066 3-hydroxybutyryl-CoA 100.0 2E-55 4.3E-60 443.9 26.8 277 145-425 5-298 (321)
20 PRK06130 3-hydroxybutyryl-CoA 100.0 1.6E-46 3.5E-51 384.2 32.8 276 146-426 3-285 (311)
21 PRK06129 3-hydroxyacyl-CoA deh 100.0 9.6E-41 2.1E-45 340.4 31.5 262 147-408 2-274 (308)
22 PF02737 3HCDH_N: 3-hydroxyacy 100.0 7.2E-41 1.6E-45 313.2 21.7 180 149-328 1-180 (180)
23 PRK07531 bifunctional 3-hydrox 100.0 3.3E-37 7.1E-42 332.6 27.6 244 146-393 3-254 (495)
24 KOG2305 3-hydroxyacyl-CoA dehy 100.0 2.5E-35 5.4E-40 269.7 14.8 228 147-377 3-241 (313)
25 PRK08268 3-hydroxy-acyl-CoA de 100.0 2.2E-28 4.8E-33 263.4 19.2 165 251-422 337-504 (507)
26 PF00725 3HCDH: 3-hydroxyacyl- 99.9 3.9E-25 8.5E-30 186.0 9.1 94 330-423 1-97 (97)
27 TIGR02279 PaaC-3OHAcCoADH 3-hy 99.9 1.6E-22 3.5E-27 217.4 17.1 119 293-411 378-499 (503)
28 KOG2304 3-hydroxyacyl-CoA dehy 99.8 9.8E-21 2.1E-25 174.1 12.6 142 403-553 137-298 (298)
29 PF00725 3HCDH: 3-hydroxyacyl- 99.8 1.4E-20 3.1E-25 158.2 8.3 89 460-552 1-97 (97)
30 COG1250 FadB 3-hydroxyacyl-CoA 99.8 2.7E-18 5.9E-23 170.9 18.3 224 319-554 25-285 (307)
31 COG2084 MmsB 3-hydroxyisobutyr 99.8 5E-17 1.1E-21 160.3 18.7 189 148-365 1-211 (286)
32 PRK09260 3-hydroxybutyryl-CoA 99.7 8.5E-18 1.8E-22 170.1 11.1 96 458-557 183-285 (288)
33 TIGR01505 tartro_sem_red 2-hyd 99.7 1.2E-16 2.7E-21 161.9 17.1 186 149-365 1-209 (291)
34 PRK07819 3-hydroxybutyryl-CoA 99.7 3.5E-17 7.7E-22 164.7 10.6 225 316-552 25-286 (286)
35 PRK05808 3-hydroxybutyryl-CoA 99.7 4.1E-17 8.9E-22 164.6 10.9 134 410-552 131-282 (282)
36 PLN02545 3-hydroxybutyryl-CoA 99.7 7E-17 1.5E-21 164.0 11.5 98 458-559 185-290 (295)
37 PRK11559 garR tartronate semia 99.7 9.4E-16 2E-20 155.9 18.9 188 147-365 2-212 (296)
38 TIGR02440 FadJ fatty oxidation 99.7 5E-16 1.1E-20 174.2 18.3 224 317-555 326-584 (699)
39 PRK08269 3-hydroxybutyryl-CoA 99.7 1.4E-15 3E-20 154.8 19.5 232 315-554 9-284 (314)
40 PRK11154 fadJ multifunctional 99.7 6.9E-16 1.5E-20 173.5 18.7 223 317-554 331-588 (708)
41 PRK07530 3-hydroxybutyryl-CoA 99.7 9.9E-17 2.1E-21 162.7 10.8 96 458-557 185-288 (292)
42 PRK11730 fadB multifunctional 99.7 1.2E-15 2.5E-20 171.6 16.4 227 315-555 332-595 (715)
43 PRK07417 arogenate dehydrogena 99.7 2.2E-15 4.8E-20 151.6 15.9 154 148-326 1-166 (279)
44 PRK08293 3-hydroxybutyryl-CoA 99.6 4.5E-16 9.8E-21 157.3 10.6 92 458-553 187-287 (287)
45 PRK06035 3-hydroxyacyl-CoA deh 99.6 3.7E-16 8E-21 158.3 9.6 91 458-552 187-290 (291)
46 TIGR02437 FadB fatty oxidation 99.6 2.7E-15 5.8E-20 168.3 16.8 226 316-555 333-595 (714)
47 TIGR02441 fa_ox_alpha_mit fatt 99.6 8.5E-15 1.8E-19 164.7 20.6 226 315-555 354-616 (737)
48 PRK11199 tyrA bifunctional cho 99.6 6.3E-14 1.4E-18 146.4 21.4 171 146-357 97-277 (374)
49 PRK06130 3-hydroxybutyryl-CoA 99.6 6.8E-15 1.5E-19 150.7 10.5 97 459-556 183-286 (311)
50 KOG0409 Predicted dehydrogenas 99.6 3.1E-13 6.7E-18 130.9 20.0 192 146-366 34-247 (327)
51 PLN02688 pyrroline-5-carboxyla 99.6 3.8E-13 8.2E-18 134.6 21.0 185 148-361 1-201 (266)
52 PRK15461 NADH-dependent gamma- 99.5 6.8E-13 1.5E-17 134.6 19.9 186 148-361 2-206 (296)
53 PF03446 NAD_binding_2: NAD bi 99.5 8.2E-14 1.8E-18 128.7 10.4 146 147-325 1-160 (163)
54 TIGR01692 HIBADH 3-hydroxyisob 99.5 8.5E-13 1.8E-17 133.6 16.5 181 152-365 1-206 (288)
55 PRK06545 prephenate dehydrogen 99.5 7.2E-13 1.6E-17 138.0 16.4 167 148-336 1-184 (359)
56 PRK11880 pyrroline-5-carboxyla 99.5 4.9E-12 1.1E-16 126.7 20.6 151 147-324 2-157 (267)
57 cd05297 GH4_alpha_glucosidase_ 99.4 1.7E-14 3.6E-19 153.0 1.3 159 149-321 2-184 (423)
58 PRK07679 pyrroline-5-carboxyla 99.4 4.4E-12 9.4E-17 127.8 18.5 188 147-361 3-206 (279)
59 PRK15059 tartronate semialdehy 99.4 4.6E-12 1E-16 128.1 18.4 183 149-361 2-204 (292)
60 PRK08507 prephenate dehydrogen 99.4 1.5E-11 3.3E-16 123.6 21.4 151 149-326 2-167 (275)
61 TIGR03026 NDP-sugDHase nucleot 99.4 5.1E-12 1.1E-16 134.3 18.3 198 148-361 1-243 (411)
62 PLN02350 phosphogluconate dehy 99.4 8.5E-12 1.9E-16 133.3 20.0 190 146-361 5-224 (493)
63 PRK08655 prephenate dehydrogen 99.4 1E-11 2.2E-16 132.3 20.3 154 148-326 1-162 (437)
64 PRK12491 pyrroline-5-carboxyla 99.4 1.7E-11 3.8E-16 122.4 20.2 152 148-325 3-160 (272)
65 PRK12557 H(2)-dependent methyl 99.4 2.7E-11 5.9E-16 124.4 21.9 205 159-386 32-260 (342)
66 PTZ00142 6-phosphogluconate de 99.4 7.7E-12 1.7E-16 133.5 18.0 188 148-362 2-219 (470)
67 PRK07502 cyclohexadienyl dehyd 99.4 1E-11 2.3E-16 126.8 17.3 157 146-326 5-178 (307)
68 COG0287 TyrA Prephenate dehydr 99.4 9.3E-12 2E-16 123.8 16.0 158 147-326 3-170 (279)
69 PRK11064 wecC UDP-N-acetyl-D-m 99.4 2.9E-11 6.4E-16 128.1 20.5 197 147-361 3-247 (415)
70 TIGR00872 gnd_rel 6-phosphoglu 99.4 3.2E-11 6.9E-16 122.6 19.7 184 149-361 2-208 (298)
71 PRK09599 6-phosphogluconate de 99.4 3.9E-11 8.4E-16 122.2 19.8 182 149-362 2-211 (301)
72 PRK12490 6-phosphogluconate de 99.4 3.4E-11 7.5E-16 122.4 18.8 181 149-362 2-210 (299)
73 PLN02858 fructose-bisphosphate 99.3 2.6E-11 5.7E-16 144.3 19.2 187 147-365 4-217 (1378)
74 PRK15057 UDP-glucose 6-dehydro 99.3 4.7E-11 1E-15 125.1 15.8 192 149-361 2-232 (388)
75 PLN02256 arogenate dehydrogena 99.3 6.5E-11 1.4E-15 119.9 16.4 153 147-326 36-203 (304)
76 PRK12478 enoyl-CoA hydratase; 99.3 7.3E-12 1.6E-16 126.8 8.6 97 1-133 173-278 (298)
77 PLN02600 enoyl-CoA hydratase 99.3 1.2E-11 2.6E-16 122.5 9.3 96 1-132 152-247 (251)
78 PRK08150 enoyl-CoA hydratase; 99.3 1.2E-11 2.7E-16 122.6 9.4 97 1-133 156-252 (255)
79 KOG1680 Enoyl-CoA hydratase [L 99.3 8.7E-12 1.9E-16 119.3 7.6 97 1-133 191-287 (290)
80 PRK00094 gpsA NAD(P)H-dependen 99.3 2.3E-10 5E-15 117.9 18.8 167 147-330 1-182 (325)
81 PRK05862 enoyl-CoA hydratase; 99.3 1.2E-11 2.5E-16 123.1 8.8 96 1-132 158-253 (257)
82 PLN02888 enoyl-CoA hydratase 99.3 1.9E-11 4.2E-16 121.8 9.7 99 1-135 163-263 (265)
83 PRK07658 enoyl-CoA hydratase; 99.2 2E-11 4.4E-16 121.4 9.5 96 1-132 158-253 (257)
84 PLN02858 fructose-bisphosphate 99.2 1.9E-10 4.1E-15 137.1 19.2 190 146-365 323-537 (1378)
85 PRK08138 enoyl-CoA hydratase; 99.2 2E-11 4.3E-16 121.6 9.3 96 1-132 162-257 (261)
86 TIGR02280 PaaB1 phenylacetate 99.2 2E-11 4.2E-16 121.4 9.2 96 1-132 157-252 (256)
87 PRK05980 enoyl-CoA hydratase; 99.2 1.7E-11 3.7E-16 122.1 8.8 95 1-131 164-258 (260)
88 PRK07938 enoyl-CoA hydratase; 99.2 1.5E-11 3.2E-16 121.6 8.2 95 1-131 155-249 (249)
89 TIGR00873 gnd 6-phosphoglucona 99.2 3.4E-10 7.3E-15 121.0 18.8 190 149-362 1-216 (467)
90 PRK08258 enoyl-CoA hydratase; 99.2 2.3E-11 4.9E-16 122.2 9.1 97 1-133 178-274 (277)
91 PRK08139 enoyl-CoA hydratase; 99.2 2.3E-11 5.1E-16 121.4 9.2 96 1-132 167-262 (266)
92 PTZ00082 L-lactate dehydrogena 99.2 2.1E-11 4.5E-16 124.6 8.9 126 147-284 6-153 (321)
93 PRK07066 3-hydroxybutyryl-CoA 99.2 7.9E-11 1.7E-15 119.7 12.8 136 403-544 124-275 (321)
94 PRK15182 Vi polysaccharide bio 99.2 3.3E-10 7.2E-15 120.1 17.6 200 148-361 7-243 (425)
95 PRK06143 enoyl-CoA hydratase; 99.2 3.2E-11 6.9E-16 119.7 9.2 94 1-130 163-256 (256)
96 PRK07799 enoyl-CoA hydratase; 99.2 3.2E-11 7E-16 120.3 9.3 96 1-132 164-259 (263)
97 PRK05479 ketol-acid reductoiso 99.2 4.9E-10 1.1E-14 113.6 17.7 185 148-358 18-225 (330)
98 PRK07680 late competence prote 99.2 9.3E-10 2E-14 110.5 19.4 151 149-326 2-158 (273)
99 PRK08140 enoyl-CoA hydratase; 99.2 3.5E-11 7.5E-16 120.1 8.9 96 1-132 163-258 (262)
100 PRK09076 enoyl-CoA hydratase; 99.2 4.3E-11 9.3E-16 119.0 9.5 96 1-132 159-254 (258)
101 PRK05809 3-hydroxybutyryl-CoA 99.2 3.8E-11 8.3E-16 119.6 9.1 96 1-132 161-256 (260)
102 PRK06127 enoyl-CoA hydratase; 99.2 4.1E-11 8.8E-16 119.9 9.3 96 1-132 170-265 (269)
103 PRK06563 enoyl-CoA hydratase; 99.2 3.8E-11 8.2E-16 119.2 9.0 96 1-132 156-251 (255)
104 PRK08252 enoyl-CoA hydratase; 99.2 3.9E-11 8.4E-16 119.0 8.9 96 1-132 155-250 (254)
105 PRK06495 enoyl-CoA hydratase; 99.2 3.8E-11 8.2E-16 119.3 8.8 96 1-132 158-253 (257)
106 PRK08229 2-dehydropantoate 2-r 99.2 1.5E-09 3.2E-14 112.8 21.0 167 147-330 2-180 (341)
107 PRK08818 prephenate dehydrogen 99.2 2.2E-10 4.7E-15 118.4 14.4 137 148-326 5-154 (370)
108 PRK09674 enoyl-CoA hydratase-i 99.2 5.5E-11 1.2E-15 118.1 9.6 96 1-132 156-251 (255)
109 PLN03214 probable enoyl-CoA hy 99.2 4.5E-11 9.7E-16 119.9 8.9 98 1-134 172-269 (278)
110 PRK07468 enoyl-CoA hydratase; 99.2 5.4E-11 1.2E-15 118.6 9.4 96 1-132 163-258 (262)
111 cd01339 LDH-like_MDH L-lactate 99.2 4.1E-11 8.8E-16 121.9 8.6 122 150-283 1-139 (300)
112 PRK05981 enoyl-CoA hydratase; 99.2 5.3E-11 1.1E-15 119.0 8.9 96 1-132 167-262 (266)
113 PRK07657 enoyl-CoA hydratase; 99.2 6.3E-11 1.4E-15 118.0 9.0 96 1-132 161-256 (260)
114 PRK09245 enoyl-CoA hydratase; 99.2 6.5E-11 1.4E-15 118.4 9.0 96 1-132 167-262 (266)
115 PRK06928 pyrroline-5-carboxyla 99.2 5.5E-10 1.2E-14 112.2 15.7 153 147-324 1-160 (277)
116 PRK07511 enoyl-CoA hydratase; 99.2 6.6E-11 1.4E-15 117.9 8.8 95 1-131 162-256 (260)
117 PRK05995 enoyl-CoA hydratase; 99.2 7.7E-11 1.7E-15 117.6 9.3 96 1-132 162-258 (262)
118 PLN02664 enoyl-CoA hydratase/d 99.2 7.5E-11 1.6E-15 118.4 9.3 96 1-132 175-271 (275)
119 PRK06494 enoyl-CoA hydratase; 99.2 6.5E-11 1.4E-15 117.8 8.5 95 1-131 158-254 (259)
120 PRK06142 enoyl-CoA hydratase; 99.2 7.5E-11 1.6E-15 118.3 9.0 96 1-132 173-269 (272)
121 PRK06476 pyrroline-5-carboxyla 99.2 1.8E-09 3.8E-14 107.6 18.6 179 149-361 2-193 (258)
122 COG1004 Ugd Predicted UDP-gluc 99.2 2.4E-09 5.2E-14 108.5 19.3 198 148-361 1-241 (414)
123 COG0677 WecC UDP-N-acetyl-D-ma 99.2 5.3E-09 1.1E-13 105.5 21.6 200 148-361 10-250 (436)
124 PRK07634 pyrroline-5-carboxyla 99.2 2.6E-09 5.6E-14 105.5 19.4 188 147-361 4-206 (245)
125 PRK06210 enoyl-CoA hydratase; 99.2 8.2E-11 1.8E-15 118.0 8.6 97 1-132 172-268 (272)
126 PRK08184 benzoyl-CoA-dihydrodi 99.2 4.8E-11 1E-15 129.4 7.4 96 2-133 446-545 (550)
127 TIGR03222 benzo_boxC benzoyl-C 99.1 4.6E-11 1E-15 129.0 6.9 97 1-133 441-541 (546)
128 PRK06688 enoyl-CoA hydratase; 99.1 1.1E-10 2.3E-15 116.4 8.9 96 1-132 160-255 (259)
129 COG0345 ProC Pyrroline-5-carbo 99.1 7.7E-10 1.7E-14 108.5 14.6 151 148-325 2-158 (266)
130 COG0240 GpsA Glycerol-3-phosph 99.1 3.3E-10 7.1E-15 113.2 12.1 166 148-330 2-181 (329)
131 PTZ00117 malate dehydrogenase; 99.1 1.4E-10 3E-15 118.7 9.3 125 148-284 6-147 (319)
132 PRK03580 carnitinyl-CoA dehydr 99.1 1.1E-10 2.3E-15 116.4 8.3 96 1-132 158-257 (261)
133 PRK08259 enoyl-CoA hydratase; 99.1 1.4E-10 3E-15 115.0 9.0 93 1-130 157-249 (254)
134 PRK14618 NAD(P)H-dependent gly 99.1 7.7E-10 1.7E-14 114.2 14.8 163 148-330 5-181 (328)
135 PRK05674 gamma-carboxygeranoyl 99.1 1.4E-10 3E-15 115.8 8.6 96 1-132 164-260 (265)
136 PRK07659 enoyl-CoA hydratase; 99.1 1.3E-10 2.8E-15 115.7 8.3 95 1-132 162-256 (260)
137 PRK07260 enoyl-CoA hydratase; 99.1 1.7E-10 3.7E-15 114.5 9.1 94 1-130 162-255 (255)
138 PRK06223 malate dehydrogenase; 99.1 2.1E-10 4.5E-15 117.3 9.7 125 147-283 2-143 (307)
139 TIGR01929 menB naphthoate synt 99.1 1.6E-10 3.4E-15 115.1 8.1 95 1-132 161-255 (259)
140 PRK14806 bifunctional cyclohex 99.1 1.4E-09 3.1E-14 124.3 17.1 156 147-326 3-176 (735)
141 PF01210 NAD_Gly3P_dh_N: NAD-d 99.1 1.5E-10 3.2E-15 106.2 7.1 105 149-265 1-106 (157)
142 TIGR00465 ilvC ketol-acid redu 99.1 3.9E-09 8.5E-14 107.2 18.0 204 148-380 4-231 (314)
143 PRK07396 dihydroxynaphthoic ac 99.1 2.4E-10 5.1E-15 114.6 8.9 96 1-133 171-266 (273)
144 PRK11423 methylmalonyl-CoA dec 99.1 2.5E-10 5.4E-15 113.6 8.6 96 1-132 160-257 (261)
145 PRK05864 enoyl-CoA hydratase; 99.1 3.4E-10 7.4E-15 113.7 9.0 96 1-132 174-271 (276)
146 PRK09120 p-hydroxycinnamoyl Co 99.1 3.7E-10 8.1E-15 113.3 9.0 94 1-130 168-264 (275)
147 PLN02921 naphthoate synthase 99.1 4.1E-10 9E-15 115.1 9.1 96 1-133 225-320 (327)
148 PRK14619 NAD(P)H-dependent gly 99.1 3.5E-09 7.5E-14 108.2 15.9 139 148-330 5-158 (308)
149 TIGR01915 npdG NADPH-dependent 99.1 5.3E-09 1.2E-13 101.4 16.2 162 148-326 1-188 (219)
150 PLN02712 arogenate dehydrogena 99.0 2.9E-09 6.4E-14 118.7 16.0 153 147-326 369-536 (667)
151 PRK08321 naphthoate synthase; 99.0 5.4E-10 1.2E-14 113.5 9.0 96 1-133 200-295 (302)
152 TIGR03210 badI 2-ketocyclohexa 99.0 5.5E-10 1.2E-14 110.9 8.7 94 1-132 158-252 (256)
153 TIGR01724 hmd_rel H2-forming N 99.0 4.9E-08 1.1E-12 96.9 21.8 147 159-326 32-193 (341)
154 PTZ00431 pyrroline carboxylate 99.0 1.1E-08 2.3E-13 102.0 17.5 144 148-324 4-153 (260)
155 PRK06144 enoyl-CoA hydratase; 99.0 8.5E-10 1.9E-14 109.9 8.9 92 1-132 167-258 (262)
156 PRK06023 enoyl-CoA hydratase; 99.0 7.8E-10 1.7E-14 109.5 8.4 91 1-128 161-251 (251)
157 PF02153 PDH: Prephenate dehyd 99.0 6.4E-09 1.4E-13 103.4 14.5 140 162-325 1-156 (258)
158 PF00378 ECH: Enoyl-CoA hydrat 99.0 7E-10 1.5E-14 109.6 7.0 92 1-128 154-245 (245)
159 PRK05870 enoyl-CoA hydratase; 99.0 8E-10 1.7E-14 109.3 7.3 90 1-128 159-249 (249)
160 PRK08260 enoyl-CoA hydratase; 99.0 1.5E-09 3.3E-14 110.1 9.1 99 1-134 177-276 (296)
161 PLN02353 probable UDP-glucose 99.0 4.1E-08 8.9E-13 105.2 20.4 203 147-361 1-251 (473)
162 PRK06072 enoyl-CoA hydratase; 99.0 1.9E-09 4E-14 106.6 8.9 93 1-132 152-244 (248)
163 PRK07509 enoyl-CoA hydratase; 99.0 1.5E-09 3.3E-14 108.3 8.3 93 1-131 166-258 (262)
164 TIGR03189 dienoyl_CoA_hyt cycl 98.9 2.8E-09 6.1E-14 105.4 9.4 94 1-132 152-247 (251)
165 PRK07327 enoyl-CoA hydratase; 98.9 2.4E-09 5.2E-14 107.1 8.8 92 1-132 170-264 (268)
166 PF03721 UDPG_MGDP_dh_N: UDP-g 98.9 6.1E-09 1.3E-13 97.9 10.6 108 148-268 1-125 (185)
167 PRK07112 polyketide biosynthes 98.9 2.4E-09 5.2E-14 106.3 8.3 92 1-131 159-250 (255)
168 PLN02712 arogenate dehydrogena 98.9 2.6E-08 5.7E-13 111.2 17.3 153 147-326 52-219 (667)
169 PRK07827 enoyl-CoA hydratase; 98.9 3.2E-09 6.8E-14 105.8 8.3 93 1-131 164-256 (260)
170 PRK09287 6-phosphogluconate de 98.9 5.6E-08 1.2E-12 103.6 18.2 177 158-362 1-208 (459)
171 PRK12439 NAD(P)H-dependent gly 98.9 4.8E-08 1E-12 101.2 17.1 178 145-337 5-194 (341)
172 PRK05617 3-hydroxyisobutyryl-C 98.9 1.6E-09 3.5E-14 111.7 5.8 127 1-130 163-320 (342)
173 PRK07110 polyketide biosynthes 98.9 6.3E-09 1.4E-13 102.9 8.9 90 1-126 158-247 (249)
174 PRK07854 enoyl-CoA hydratase; 98.9 6E-09 1.3E-13 102.6 8.6 90 1-132 150-239 (243)
175 PF03807 F420_oxidored: NADP o 98.9 8E-09 1.7E-13 86.4 7.7 91 149-263 1-95 (96)
176 COG2085 Predicted dinucleotide 98.9 9.6E-08 2.1E-12 89.4 15.6 152 147-326 1-179 (211)
177 PF10727 Rossmann-like: Rossma 98.8 1.7E-08 3.7E-13 88.3 9.9 115 147-285 10-127 (127)
178 PRK06190 enoyl-CoA hydratase; 98.8 1.5E-08 3.2E-13 100.6 9.1 93 1-129 158-253 (258)
179 TIGR03376 glycerol3P_DH glycer 98.8 6.2E-08 1.3E-12 99.6 13.2 164 149-330 1-197 (342)
180 TIGR01763 MalateDH_bact malate 98.8 1.4E-08 3.1E-13 103.2 8.2 98 148-258 2-114 (305)
181 PLN02874 3-hydroxyisobutyryl-C 98.7 8.8E-09 1.9E-13 107.7 5.7 128 1-128 168-330 (379)
182 cd00650 LDH_MDH_like NAD-depen 98.7 2.2E-08 4.7E-13 100.0 8.2 118 150-283 1-143 (263)
183 COG1024 CaiD Enoyl-CoA hydrata 98.7 3E-08 6.5E-13 98.6 8.9 92 1-130 162-254 (257)
184 PRK14620 NAD(P)H-dependent gly 98.7 1.4E-07 2.9E-12 97.4 13.9 103 149-265 2-109 (326)
185 PTZ00345 glycerol-3-phosphate 98.7 1.1E-07 2.3E-12 98.6 11.6 169 147-330 11-206 (365)
186 PRK06522 2-dehydropantoate 2-r 98.7 6.6E-07 1.4E-11 91.2 16.3 112 148-274 1-113 (304)
187 PRK12921 2-dehydropantoate 2-r 98.6 4.7E-07 1E-11 92.4 14.7 167 148-330 1-180 (305)
188 COG0447 MenB Dihydroxynaphthoi 98.6 2.4E-08 5.3E-13 91.9 4.2 91 2-133 181-275 (282)
189 PRK06249 2-dehydropantoate 2-r 98.6 8E-07 1.7E-11 91.1 15.4 175 146-336 4-195 (313)
190 PRK12480 D-lactate dehydrogena 98.6 5.5E-07 1.2E-11 92.5 13.5 112 148-287 147-262 (330)
191 PRK06129 3-hydroxyacyl-CoA deh 98.6 1.9E-07 4.2E-12 95.4 9.7 86 459-545 186-275 (308)
192 COG1023 Gnd Predicted 6-phosph 98.6 4.7E-06 1E-10 78.7 17.5 182 148-361 1-209 (300)
193 TIGR02354 thiF_fam2 thiamine b 98.6 1.3E-07 2.8E-12 90.0 7.4 105 148-260 22-143 (200)
194 PRK06444 prephenate dehydrogen 98.6 9.3E-07 2E-11 83.6 13.0 113 148-325 1-119 (197)
195 COG0362 Gnd 6-phosphogluconate 98.6 5.3E-06 1.2E-10 83.8 18.5 191 147-365 3-223 (473)
196 KOG1679 Enoyl-CoA hydratase [L 98.5 8.1E-08 1.7E-12 88.3 5.1 97 1-133 188-288 (291)
197 KOG1682 Enoyl-CoA isomerase [L 98.5 1.4E-07 3E-12 86.1 5.5 95 1-131 188-282 (287)
198 PRK08290 enoyl-CoA hydratase; 98.5 2.1E-07 4.5E-12 94.0 6.9 81 1-117 180-262 (288)
199 PF00056 Ldh_1_N: lactate/mala 98.4 2.6E-06 5.6E-11 76.5 11.8 119 148-282 1-141 (141)
200 COG4007 Predicted dehydrogenas 98.4 2.7E-05 5.8E-10 74.2 18.6 146 159-326 33-194 (340)
201 PRK06213 enoyl-CoA hydratase; 98.4 2.5E-07 5.3E-12 90.4 4.7 73 1-109 156-228 (229)
202 KOG1683 Hydroxyacyl-CoA dehydr 98.4 2.9E-07 6.4E-12 92.2 4.2 78 328-410 292-375 (380)
203 PRK13243 glyoxylate reductase; 98.4 3.3E-06 7.1E-11 87.0 12.0 114 148-287 151-268 (333)
204 PLN02157 3-hydroxyisobutyryl-C 98.4 8E-07 1.7E-11 93.0 7.4 88 1-126 196-283 (401)
205 cd05291 HicDH_like L-2-hydroxy 98.3 1.7E-06 3.7E-11 88.3 9.5 98 148-259 1-114 (306)
206 PRK08788 enoyl-CoA hydratase; 98.3 1.6E-06 3.4E-11 87.2 8.9 90 1-127 185-275 (287)
207 PRK15076 alpha-galactosidase; 98.3 1.8E-06 4E-11 91.7 9.4 76 148-235 2-84 (431)
208 TIGR00112 proC pyrroline-5-car 98.3 4.6E-05 9.9E-10 75.2 17.6 166 171-361 10-184 (245)
209 PRK08272 enoyl-CoA hydratase; 98.3 1.6E-06 3.4E-11 88.4 7.1 43 1-43 188-230 (302)
210 cd05293 LDH_1 A subgroup of L- 98.3 3.1E-06 6.7E-11 86.3 8.9 98 148-258 4-117 (312)
211 PRK05708 2-dehydropantoate 2-r 98.2 1.5E-05 3.3E-10 81.2 13.6 174 148-337 3-186 (305)
212 cd05292 LDH_2 A subgroup of L- 98.2 3.8E-06 8.2E-11 85.7 8.9 98 148-259 1-114 (308)
213 PRK13403 ketol-acid reductoiso 98.2 6.3E-06 1.4E-10 82.7 9.0 85 148-259 17-103 (335)
214 cd00300 LDH_like L-lactate deh 98.2 5.6E-06 1.2E-10 84.2 8.9 96 150-259 1-112 (300)
215 PLN02602 lactate dehydrogenase 98.2 5.1E-06 1.1E-10 85.7 8.5 96 148-258 38-151 (350)
216 cd01065 NAD_bind_Shikimate_DH 98.2 3.9E-06 8.4E-11 76.6 6.7 106 148-274 20-128 (155)
217 COG1893 ApbA Ketopantoate redu 98.2 3.4E-05 7.4E-10 78.5 14.1 124 148-285 1-125 (307)
218 PRK08605 D-lactate dehydrogena 98.2 1.2E-05 2.6E-10 82.8 10.9 112 148-286 147-263 (332)
219 PRK00066 ldh L-lactate dehydro 98.1 7.3E-06 1.6E-10 83.8 8.9 96 148-258 7-118 (315)
220 PF07991 IlvN: Acetohydroxy ac 98.1 7.1E-06 1.5E-10 73.8 7.0 87 148-260 5-93 (165)
221 PRK06436 glycerate dehydrogena 98.1 2.7E-05 5.8E-10 79.0 11.9 124 148-300 123-255 (303)
222 PRK15469 ghrA bifunctional gly 98.1 2.4E-05 5.2E-10 79.8 11.2 114 148-287 137-254 (312)
223 TIGR01327 PGDH D-3-phosphoglyc 98.1 2.7E-05 5.9E-10 85.2 12.3 115 148-287 139-257 (525)
224 PRK07574 formate dehydrogenase 98.1 4.6E-05 1E-09 79.6 13.3 116 148-287 193-312 (385)
225 PLN03139 formate dehydrogenase 98.1 3.5E-05 7.5E-10 80.5 12.4 116 148-287 200-319 (386)
226 cd05294 LDH-like_MDH_nadp A la 98.0 1.7E-05 3.7E-10 80.9 9.0 123 148-283 1-145 (309)
227 COG0039 Mdh Malate/lactate deh 98.0 1.4E-05 3.1E-10 80.2 7.7 99 148-258 1-115 (313)
228 cd05290 LDH_3 A subgroup of L- 98.0 1.9E-05 4.1E-10 80.3 8.6 70 149-234 1-76 (307)
229 PF02558 ApbA: Ketopantoate re 98.0 1.1E-05 2.4E-10 73.2 6.4 112 150-275 1-115 (151)
230 KOG2711 Glycerol-3-phosphate d 98.0 4.6E-05 1E-09 75.8 11.0 180 145-330 19-219 (372)
231 PRK05869 enoyl-CoA hydratase; 98.0 8.7E-06 1.9E-10 79.0 5.4 43 1-43 163-205 (222)
232 PRK13581 D-3-phosphoglycerate 98.0 5.9E-05 1.3E-09 82.7 11.9 114 148-287 141-258 (526)
233 PF02826 2-Hacid_dh_C: D-isome 97.9 2.4E-05 5.2E-10 73.2 7.5 115 148-287 37-155 (178)
234 COG0111 SerA Phosphoglycerate 97.9 6.9E-05 1.5E-09 76.6 10.8 113 148-287 143-261 (324)
235 KOG1681 Enoyl-CoA isomerase [L 97.9 1.5E-05 3.2E-10 74.5 5.1 94 2-131 192-286 (292)
236 PLN00112 malate dehydrogenase 97.9 9.3E-05 2E-09 78.3 11.9 109 147-271 100-233 (444)
237 PLN02928 oxidoreductase family 97.9 6.8E-05 1.5E-09 77.7 10.6 127 148-287 160-290 (347)
238 KOG0016 Enoyl-CoA hydratase/is 97.8 4.1E-05 8.8E-10 73.3 6.9 93 1-129 171-263 (266)
239 PF00670 AdoHcyase_NAD: S-aden 97.8 0.00013 2.9E-09 66.1 9.1 98 148-273 24-124 (162)
240 PRK05442 malate dehydrogenase; 97.8 7.8E-05 1.7E-09 76.4 8.4 107 147-269 4-135 (326)
241 TIGR01757 Malate-DH_plant mala 97.8 0.00022 4.7E-09 74.4 11.5 108 148-271 45-177 (387)
242 PLN02988 3-hydroxyisobutyryl-C 97.7 0.0001 2.2E-09 77.1 9.0 126 1-128 168-329 (381)
243 TIGR01759 MalateDH-SF1 malate 97.7 0.00011 2.3E-09 75.3 8.4 107 148-271 4-136 (323)
244 PLN00106 malate dehydrogenase 97.7 0.00013 2.8E-09 74.5 8.9 93 148-259 19-132 (323)
245 TIGR02853 spore_dpaA dipicolin 97.7 9.3E-05 2E-09 74.6 7.6 89 148-263 152-241 (287)
246 KOG2380 Prephenate dehydrogena 97.7 0.00087 1.9E-08 66.7 13.9 151 148-325 53-218 (480)
247 TIGR01772 MDH_euk_gproteo mala 97.7 0.0001 2.3E-09 74.9 7.9 92 149-259 1-113 (312)
248 PRK08410 2-hydroxyacid dehydro 97.7 0.00019 4.1E-09 73.4 9.8 110 148-287 146-259 (311)
249 cd01338 MDH_choloroplast_like 97.7 7.5E-05 1.6E-09 76.5 6.7 107 148-271 3-135 (322)
250 cd01487 E1_ThiF_like E1_ThiF_l 97.7 0.00011 2.4E-09 68.4 7.2 95 149-251 1-112 (174)
251 PRK14194 bifunctional 5,10-met 97.6 9.5E-05 2.1E-09 74.1 6.5 71 148-262 160-231 (301)
252 PRK05225 ketol-acid reductoiso 97.6 0.0013 2.9E-08 68.8 15.1 184 148-358 37-250 (487)
253 PRK11790 D-3-phosphoglycerate 97.6 0.00037 7.9E-09 73.9 11.3 111 148-287 152-267 (409)
254 PRK00257 erythronate-4-phospha 97.6 0.00021 4.5E-09 74.6 9.1 111 148-287 117-235 (381)
255 cd01337 MDH_glyoxysomal_mitoch 97.6 0.00018 3.8E-09 73.2 8.4 94 148-260 1-115 (310)
256 PRK07531 bifunctional 3-hydrox 97.6 0.00018 3.8E-09 78.5 8.3 68 458-526 183-251 (495)
257 PRK08306 dipicolinate synthase 97.5 0.00041 8.9E-09 70.3 9.7 90 148-264 153-243 (296)
258 PLN02267 enoyl-CoA hydratase/i 97.5 0.00011 2.3E-09 72.3 5.2 43 1-43 160-203 (239)
259 TIGR01771 L-LDH-NAD L-lactate 97.5 0.00016 3.4E-09 73.4 6.4 94 152-259 1-110 (299)
260 PTZ00325 malate dehydrogenase; 97.5 0.00027 5.8E-09 72.2 7.9 34 146-179 7-43 (321)
261 PRK06932 glycerate dehydrogena 97.5 0.00061 1.3E-08 69.7 10.4 109 148-287 148-261 (314)
262 PRK15409 bifunctional glyoxyla 97.5 0.00084 1.8E-08 68.9 11.3 113 148-287 146-264 (323)
263 PF01488 Shikimate_DH: Shikima 97.5 0.00025 5.4E-09 63.2 6.4 74 147-238 12-87 (135)
264 TIGR01758 MDH_euk_cyt malate d 97.5 0.00029 6.3E-09 72.2 7.7 106 149-271 1-132 (324)
265 KOG3124 Pyrroline-5-carboxylat 97.5 0.001 2.2E-08 64.1 10.7 151 148-322 1-156 (267)
266 cd00704 MDH Malate dehydrogena 97.5 0.00025 5.5E-09 72.6 7.1 106 149-271 2-133 (323)
267 PLN02306 hydroxypyruvate reduc 97.5 0.0012 2.5E-08 69.3 12.1 127 148-287 166-300 (386)
268 cd05197 GH4_glycoside_hydrolas 97.4 0.0011 2.3E-08 70.6 11.7 75 148-234 1-82 (425)
269 PRK06141 ornithine cyclodeamin 97.4 0.00037 8E-09 71.4 8.0 93 147-263 125-220 (314)
270 PRK06487 glycerate dehydrogena 97.4 0.00073 1.6E-08 69.2 9.8 108 148-287 149-261 (317)
271 PRK13302 putative L-aspartate 97.4 0.00096 2.1E-08 66.8 10.2 71 146-238 5-79 (271)
272 KOG2653 6-phosphogluconate deh 97.4 0.004 8.7E-08 62.4 14.1 196 146-365 5-227 (487)
273 PLN02851 3-hydroxyisobutyryl-C 97.4 0.00079 1.7E-08 70.8 9.8 126 1-128 201-362 (407)
274 PRK13304 L-aspartate dehydroge 97.4 0.0012 2.5E-08 66.0 10.3 77 148-249 2-82 (265)
275 cd01075 NAD_bind_Leu_Phe_Val_D 97.3 0.00092 2E-08 63.8 9.0 39 148-186 29-67 (200)
276 KOG1495 Lactate dehydrogenase 97.3 0.00082 1.8E-08 64.9 8.4 77 146-235 19-97 (332)
277 cd00401 AdoHcyase S-adenosyl-L 97.3 0.0012 2.7E-08 69.5 10.5 86 148-262 203-289 (413)
278 PRK15438 erythronate-4-phospha 97.3 0.00068 1.5E-08 70.6 8.5 110 148-287 117-235 (378)
279 cd05296 GH4_P_beta_glucosidase 97.3 0.0013 2.7E-08 69.9 10.5 75 148-234 1-83 (419)
280 PRK08644 thiamine biosynthesis 97.3 0.00036 7.8E-09 67.1 5.9 104 148-259 29-149 (212)
281 TIGR00507 aroE shikimate 5-deh 97.3 0.00035 7.7E-09 70.0 6.1 104 148-272 118-224 (270)
282 COG1748 LYS9 Saccharopine dehy 97.3 0.00038 8.1E-09 72.3 6.1 92 147-260 1-97 (389)
283 COG0569 TrkA K+ transport syst 97.3 0.0026 5.6E-08 61.8 11.6 94 148-262 1-101 (225)
284 PRK14188 bifunctional 5,10-met 97.3 0.00065 1.4E-08 68.2 7.2 70 148-262 159-230 (296)
285 cd05213 NAD_bind_Glutamyl_tRNA 97.2 0.0016 3.4E-08 66.7 9.5 92 147-261 178-272 (311)
286 COG1052 LdhA Lactate dehydroge 97.2 0.0027 5.9E-08 64.9 10.8 113 148-286 147-263 (324)
287 TIGR02371 ala_DH_arch alanine 97.2 0.0018 4E-08 66.6 9.6 94 147-264 128-224 (325)
288 COG4091 Predicted homoserine d 97.2 0.0083 1.8E-07 60.2 13.5 157 148-326 18-184 (438)
289 PRK05476 S-adenosyl-L-homocyst 97.1 0.0016 3.5E-08 68.8 9.0 86 148-263 213-300 (425)
290 TIGR00936 ahcY adenosylhomocys 97.1 0.0018 3.9E-08 68.0 9.2 97 148-273 196-296 (406)
291 PRK06718 precorrin-2 dehydroge 97.1 0.0043 9.3E-08 59.2 10.7 126 148-317 11-142 (202)
292 PRK12549 shikimate 5-dehydroge 97.1 0.0017 3.7E-08 65.4 8.2 74 148-237 128-203 (284)
293 TIGR00745 apbA_panE 2-dehydrop 97.1 0.0076 1.6E-07 60.9 12.7 104 157-274 1-106 (293)
294 PRK05086 malate dehydrogenase; 97.0 0.0017 3.8E-08 66.3 7.9 94 148-259 1-115 (312)
295 cd05298 GH4_GlvA_pagL_like Gly 97.0 0.005 1.1E-07 65.7 11.4 75 148-234 1-82 (437)
296 PRK08618 ornithine cyclodeamin 97.0 0.0035 7.7E-08 64.5 9.8 94 147-264 127-223 (325)
297 TIGR03222 benzo_boxC benzoyl-C 97.0 0.00048 1E-08 75.1 3.5 43 1-43 188-230 (546)
298 PF01113 DapB_N: Dihydrodipico 97.0 0.0034 7.5E-08 54.9 8.1 103 148-271 1-107 (124)
299 PRK14179 bifunctional 5,10-met 97.0 0.0015 3.3E-08 65.1 6.4 70 148-262 159-230 (284)
300 PF02056 Glyco_hydro_4: Family 97.0 0.0023 4.9E-08 59.6 7.2 75 149-235 1-82 (183)
301 cd01336 MDH_cytoplasmic_cytoso 97.0 0.0017 3.7E-08 66.8 7.0 107 148-271 3-135 (325)
302 cd01080 NAD_bind_m-THF_DH_Cycl 97.0 0.0032 6.9E-08 58.1 8.1 74 148-265 45-119 (168)
303 PRK00258 aroE shikimate 5-dehy 96.9 0.0016 3.4E-08 65.6 6.5 72 148-238 124-197 (278)
304 cd01078 NAD_bind_H4MPT_DH NADP 96.9 0.0024 5.3E-08 60.5 7.5 40 148-187 29-69 (194)
305 PRK07340 ornithine cyclodeamin 96.9 0.0025 5.4E-08 65.0 7.8 92 147-264 125-219 (304)
306 TIGR01470 cysG_Nterm siroheme 96.9 0.0064 1.4E-07 58.2 10.2 131 148-317 10-142 (205)
307 KOG0069 Glyoxylate/hydroxypyru 96.9 0.0095 2.1E-07 60.6 11.7 118 146-287 161-281 (336)
308 PRK04148 hypothetical protein; 96.9 0.011 2.4E-07 52.1 10.5 94 148-262 18-111 (134)
309 PRK08184 benzoyl-CoA-dihydrodi 96.9 0.00065 1.4E-08 74.3 3.3 43 1-43 192-234 (550)
310 smart00859 Semialdhyde_dh Semi 96.9 0.0051 1.1E-07 53.6 8.4 99 149-267 1-104 (122)
311 KOG2666 UDP-glucose/GDP-mannos 96.9 0.054 1.2E-06 53.7 15.9 111 147-268 1-132 (481)
312 TIGR03200 dearomat_oah 6-oxocy 96.9 0.0018 3.9E-08 66.3 6.2 41 1-41 188-240 (360)
313 PTZ00075 Adenosylhomocysteinas 96.8 0.0036 7.9E-08 66.6 8.2 88 148-266 255-344 (476)
314 TIGR01035 hemA glutamyl-tRNA r 96.8 0.002 4.3E-08 68.7 6.3 38 148-185 181-219 (417)
315 TIGR02992 ectoine_eutC ectoine 96.7 0.0071 1.5E-07 62.3 9.5 90 148-260 130-222 (326)
316 PLN02494 adenosylhomocysteinas 96.7 0.0086 1.9E-07 63.6 10.1 97 148-273 255-355 (477)
317 TIGR00518 alaDH alanine dehydr 96.7 0.0039 8.5E-08 65.3 7.3 40 147-186 167-206 (370)
318 PRK08291 ectoine utilization p 96.7 0.0082 1.8E-07 62.0 9.5 74 147-237 132-208 (330)
319 PRK09310 aroDE bifunctional 3- 96.6 0.005 1.1E-07 66.7 7.7 70 148-238 333-402 (477)
320 TIGR01809 Shik-DH-AROM shikima 96.6 0.0062 1.3E-07 61.4 7.6 39 148-186 126-165 (282)
321 PRK00045 hemA glutamyl-tRNA re 96.6 0.0026 5.7E-08 68.0 5.0 38 148-185 183-221 (423)
322 PF13460 NAD_binding_10: NADH( 96.5 0.01 2.2E-07 55.4 7.9 36 150-185 1-37 (183)
323 COG1712 Predicted dinucleotide 96.5 0.017 3.6E-07 54.8 9.0 91 149-266 2-96 (255)
324 PRK06407 ornithine cyclodeamin 96.5 0.016 3.4E-07 58.9 9.8 94 147-263 117-213 (301)
325 PF01118 Semialdhyde_dh: Semia 96.5 0.0046 1E-07 53.8 5.1 99 149-268 1-103 (121)
326 COG0059 IlvC Ketol-acid reduct 96.4 0.052 1.1E-06 53.8 12.6 87 148-259 19-106 (338)
327 TIGR02356 adenyl_thiF thiazole 96.4 0.0063 1.4E-07 58.1 6.0 32 148-179 22-54 (202)
328 PRK06046 alanine dehydrogenase 96.4 0.016 3.6E-07 59.6 9.4 94 147-264 129-225 (326)
329 PF03059 NAS: Nicotianamine sy 96.4 0.026 5.7E-07 56.1 10.4 100 147-261 121-229 (276)
330 COG2910 Putative NADH-flavin r 96.4 0.0076 1.7E-07 55.3 6.0 38 148-185 1-39 (211)
331 PLN00203 glutamyl-tRNA reducta 96.4 0.0051 1.1E-07 66.9 5.7 40 147-186 266-306 (519)
332 PRK00048 dihydrodipicolinate r 96.3 0.0097 2.1E-07 59.1 7.2 66 148-237 2-71 (257)
333 PRK12475 thiamine/molybdopteri 96.3 0.01 2.2E-07 61.3 7.6 33 148-180 25-58 (338)
334 COG1064 AdhP Zn-dependent alco 96.3 0.2 4.4E-06 51.3 16.5 40 148-187 168-207 (339)
335 PF01408 GFO_IDH_MocA: Oxidore 96.3 0.045 9.9E-07 47.1 10.5 67 149-238 2-74 (120)
336 PRK11861 bifunctional prephena 96.3 0.023 5E-07 64.4 10.7 95 230-326 1-110 (673)
337 PRK06823 ornithine cyclodeamin 96.2 0.023 5.1E-07 58.1 9.5 94 147-264 128-224 (315)
338 PRK05562 precorrin-2 dehydroge 96.2 0.033 7.3E-07 53.6 9.9 126 148-316 26-157 (223)
339 PLN02819 lysine-ketoglutarate 96.2 0.052 1.1E-06 63.5 13.2 77 144-239 566-661 (1042)
340 COG2423 Predicted ornithine cy 96.2 0.024 5.3E-07 57.9 9.3 94 146-262 129-225 (330)
341 PRK06719 precorrin-2 dehydroge 96.2 0.077 1.7E-06 48.5 11.8 123 148-316 14-141 (157)
342 PRK13301 putative L-aspartate 96.2 0.028 6.1E-07 55.3 9.3 64 148-236 3-72 (267)
343 PF02254 TrkA_N: TrkA-N domain 96.2 0.071 1.5E-06 45.7 10.9 91 150-262 1-97 (116)
344 PF02423 OCD_Mu_crystall: Orni 96.2 0.012 2.6E-07 60.2 6.9 95 148-264 129-226 (313)
345 PRK13303 L-aspartate dehydroge 96.1 0.006 1.3E-07 60.9 4.5 68 148-237 2-72 (265)
346 PRK07589 ornithine cyclodeamin 96.1 0.04 8.7E-07 57.0 10.5 96 147-264 129-227 (346)
347 PRK09424 pntA NAD(P) transhydr 96.1 0.027 5.8E-07 61.1 9.4 41 147-187 165-205 (509)
348 TIGR01921 DAP-DH diaminopimela 96.0 0.074 1.6E-06 54.2 11.9 66 148-239 4-73 (324)
349 PRK13940 glutamyl-tRNA reducta 96.0 0.0079 1.7E-07 63.8 5.1 69 148-236 182-252 (414)
350 COG0373 HemA Glutamyl-tRNA red 96.0 0.0088 1.9E-07 62.6 5.3 39 148-186 179-218 (414)
351 COG0169 AroE Shikimate 5-dehyd 96.0 0.018 4E-07 57.6 7.3 74 148-238 127-202 (283)
352 cd05191 NAD_bind_amino_acid_DH 96.0 0.032 7E-07 45.3 7.4 32 147-178 23-55 (86)
353 PRK06153 hypothetical protein; 96.0 0.015 3.3E-07 60.2 6.6 32 148-179 177-209 (393)
354 TIGR00036 dapB dihydrodipicoli 95.9 0.027 6E-07 56.2 8.2 32 148-179 2-36 (266)
355 PRK14175 bifunctional 5,10-met 95.9 0.027 5.8E-07 56.4 7.8 72 148-263 159-231 (286)
356 PF00070 Pyr_redox: Pyridine n 95.8 0.018 3.8E-07 46.0 5.0 35 149-183 1-35 (80)
357 PRK00961 H(2)-dependent methyl 95.8 0.39 8.5E-06 47.0 14.8 109 215-326 129-242 (342)
358 COG0686 Ald Alanine dehydrogen 95.8 0.012 2.7E-07 58.3 4.8 92 148-261 169-267 (371)
359 cd01483 E1_enzyme_family Super 95.8 0.021 4.6E-07 51.2 6.0 31 149-179 1-32 (143)
360 PRK03659 glutathione-regulated 95.8 0.081 1.7E-06 59.2 11.9 95 148-264 401-501 (601)
361 COG1648 CysG Siroheme synthase 95.7 0.14 2.9E-06 49.1 11.7 131 148-317 13-145 (210)
362 PF03435 Saccharop_dh: Sacchar 95.7 0.0083 1.8E-07 63.4 3.8 38 150-187 1-40 (386)
363 PRK10669 putative cation:proto 95.7 0.079 1.7E-06 58.9 11.4 92 148-261 418-515 (558)
364 TIGR00561 pntA NAD(P) transhyd 95.7 0.073 1.6E-06 57.6 10.6 41 147-187 164-204 (511)
365 PRK02318 mannitol-1-phosphate 95.6 0.039 8.5E-07 58.1 8.1 39 148-186 1-40 (381)
366 COG1486 CelF Alpha-galactosida 95.6 0.045 9.9E-07 57.5 8.3 76 147-234 3-85 (442)
367 cd05311 NAD_bind_2_malic_enz N 95.6 0.024 5.1E-07 55.2 5.9 32 148-179 26-60 (226)
368 PRK07688 thiamine/molybdopteri 95.6 0.031 6.7E-07 57.8 7.1 33 148-180 25-58 (339)
369 PRK06270 homoserine dehydrogen 95.6 0.041 8.9E-07 57.0 8.0 22 148-169 3-24 (341)
370 PRK00683 murD UDP-N-acetylmura 95.6 0.083 1.8E-06 56.5 10.6 37 147-183 3-39 (418)
371 PRK06199 ornithine cyclodeamin 95.5 0.042 9E-07 57.7 8.0 75 147-236 155-233 (379)
372 PRK09496 trkA potassium transp 95.5 0.072 1.6E-06 57.5 10.2 39 148-186 1-39 (453)
373 PRK14192 bifunctional 5,10-met 95.5 0.042 9.2E-07 55.2 7.6 70 148-261 160-230 (283)
374 PRK09496 trkA potassium transp 95.5 0.17 3.6E-06 54.6 12.9 41 146-186 230-270 (453)
375 TIGR01723 hmd_TIGR 5,10-methen 95.5 0.67 1.5E-05 45.5 15.2 106 218-326 131-240 (340)
376 PRK14027 quinate/shikimate deh 95.5 0.018 4E-07 57.9 4.9 40 148-187 128-168 (283)
377 PRK12409 D-amino acid dehydrog 95.4 0.016 3.4E-07 61.8 4.4 33 148-180 2-34 (410)
378 PRK03562 glutathione-regulated 95.3 0.14 3.1E-06 57.5 11.9 93 147-261 400-498 (621)
379 PF13241 NAD_binding_7: Putati 95.3 0.067 1.4E-06 45.1 7.1 72 148-248 8-81 (103)
380 PRK04207 glyceraldehyde-3-phos 95.2 0.086 1.9E-06 54.6 9.1 106 148-264 2-111 (341)
381 PRK12749 quinate/shikimate deh 95.1 0.071 1.5E-06 53.8 7.9 34 148-181 125-159 (288)
382 PRK08223 hypothetical protein; 95.1 0.048 1E-06 54.6 6.6 33 148-180 28-61 (287)
383 KOG0023 Alcohol dehydrogenase, 95.1 1.3 2.7E-05 44.7 16.1 39 147-186 182-221 (360)
384 PRK12548 shikimate 5-dehydroge 95.0 0.048 1E-06 55.2 6.4 34 148-181 127-161 (289)
385 KOG2018 Predicted dinucleotide 94.9 0.11 2.4E-06 51.5 8.2 110 123-247 61-185 (430)
386 PRK14189 bifunctional 5,10-met 94.9 0.044 9.6E-07 54.7 5.6 70 148-262 159-230 (285)
387 TIGR03736 PRTRC_ThiF PRTRC sys 94.9 0.068 1.5E-06 52.3 6.7 98 148-250 12-129 (244)
388 PRK01438 murD UDP-N-acetylmura 94.8 0.12 2.5E-06 56.4 9.1 46 135-181 5-50 (480)
389 COG0300 DltE Short-chain dehyd 94.8 0.076 1.6E-06 52.5 6.9 47 146-192 5-52 (265)
390 PF13380 CoA_binding_2: CoA bi 94.8 0.13 2.7E-06 44.5 7.4 79 148-258 1-84 (116)
391 cd01484 E1-2_like Ubiquitin ac 94.8 0.1 2.2E-06 51.0 7.6 32 149-180 1-33 (234)
392 CHL00194 ycf39 Ycf39; Provisio 94.7 0.065 1.4E-06 54.9 6.6 35 148-182 1-36 (317)
393 PRK10637 cysG siroheme synthas 94.7 0.18 4E-06 54.4 10.3 128 148-317 13-145 (457)
394 PRK12828 short chain dehydroge 94.7 0.052 1.1E-06 52.6 5.6 38 148-185 8-46 (239)
395 PRK12550 shikimate 5-dehydroge 94.7 0.096 2.1E-06 52.4 7.4 39 148-186 123-162 (272)
396 cd05212 NAD_bind_m-THF_DH_Cycl 94.7 0.1 2.3E-06 46.5 6.8 72 148-263 29-101 (140)
397 KOG0022 Alcohol dehydrogenase, 94.7 0.43 9.4E-06 47.7 11.6 40 148-187 194-234 (375)
398 cd00757 ThiF_MoeB_HesA_family 94.7 0.064 1.4E-06 52.3 6.0 33 148-180 22-55 (228)
399 COG0136 Asd Aspartate-semialde 94.6 0.15 3.3E-06 51.8 8.6 98 148-268 2-103 (334)
400 PRK07877 hypothetical protein; 94.6 0.038 8.2E-07 62.4 4.8 32 148-180 108-141 (722)
401 PRK06349 homoserine dehydrogen 94.6 0.09 1.9E-06 56.3 7.4 66 148-237 4-83 (426)
402 TIGR02355 moeB molybdopterin s 94.6 0.056 1.2E-06 53.1 5.4 34 148-181 25-59 (240)
403 PRK05600 thiamine biosynthesis 94.5 0.038 8.1E-07 57.9 4.3 32 148-179 42-74 (370)
404 COG1063 Tdh Threonine dehydrog 94.5 0.15 3.2E-06 53.2 8.6 39 149-187 171-210 (350)
405 PF12847 Methyltransf_18: Meth 94.5 0.15 3.3E-06 43.1 7.3 96 148-261 3-110 (112)
406 PRK05597 molybdopterin biosynt 94.5 0.033 7.1E-07 58.1 3.7 33 148-180 29-62 (355)
407 PRK00436 argC N-acetyl-gamma-g 94.5 0.12 2.6E-06 53.7 7.7 100 147-268 2-105 (343)
408 cd00755 YgdL_like Family of ac 94.4 0.14 3E-06 49.9 7.6 33 148-180 12-45 (231)
409 PRK08762 molybdopterin biosynt 94.4 0.032 7E-07 58.7 3.4 32 148-179 136-168 (376)
410 PRK12829 short chain dehydroge 94.4 0.19 4.1E-06 49.6 8.8 38 148-185 12-50 (264)
411 cd01490 Ube1_repeat2 Ubiquitin 94.3 0.23 5E-06 52.7 9.5 166 149-322 1-191 (435)
412 PRK08374 homoserine dehydrogen 94.2 0.15 3.2E-06 52.8 7.8 21 148-168 3-23 (336)
413 PF13450 NAD_binding_8: NAD(P) 94.2 0.053 1.1E-06 41.9 3.5 30 152-181 1-30 (68)
414 PRK08300 acetaldehyde dehydrog 94.2 0.2 4.3E-06 50.6 8.4 97 148-265 5-104 (302)
415 PRK00711 D-amino acid dehydrog 94.2 0.048 1E-06 58.1 4.4 33 149-181 2-34 (416)
416 PRK06194 hypothetical protein; 94.2 0.22 4.8E-06 49.9 9.0 40 148-187 7-47 (287)
417 cd01076 NAD_bind_1_Glu_DH NAD( 94.2 0.19 4.1E-06 48.9 8.0 31 148-178 32-63 (227)
418 PRK05690 molybdopterin biosynt 94.2 0.093 2E-06 51.7 6.0 33 148-180 33-66 (245)
419 PRK15116 sulfur acceptor prote 94.1 0.084 1.8E-06 52.5 5.4 33 148-180 31-64 (268)
420 COG1179 Dinucleotide-utilizing 94.1 0.24 5.3E-06 47.7 8.2 36 148-183 31-67 (263)
421 PLN00016 RNA-binding protein; 94.1 0.13 2.8E-06 54.2 7.2 37 146-182 51-92 (378)
422 KOG1494 NAD-dependent malate d 94.1 1.5 3.2E-05 43.3 13.5 120 146-284 27-174 (345)
423 PRK14191 bifunctional 5,10-met 94.0 0.14 3.1E-06 51.1 6.9 71 148-262 158-229 (285)
424 PLN03075 nicotianamine synthas 94.0 0.25 5.4E-06 49.7 8.7 102 147-263 124-234 (296)
425 PF01266 DAO: FAD dependent ox 94.0 0.061 1.3E-06 55.4 4.5 31 149-179 1-31 (358)
426 cd01489 Uba2_SUMO Ubiquitin ac 94.0 0.15 3.2E-06 51.9 7.1 32 149-180 1-33 (312)
427 PF02882 THF_DHG_CYH_C: Tetrah 93.9 0.12 2.5E-06 47.3 5.6 73 148-264 37-110 (160)
428 PRK14106 murD UDP-N-acetylmura 93.9 0.67 1.4E-05 50.0 12.5 33 148-180 6-38 (450)
429 PLN03209 translocon at the inn 93.9 0.33 7.1E-06 53.3 9.8 40 148-187 81-121 (576)
430 KOG2305 3-hydroxyacyl-CoA dehy 93.8 0.038 8.2E-07 52.3 2.3 53 459-512 188-240 (313)
431 PRK07326 short chain dehydroge 93.8 0.097 2.1E-06 50.8 5.4 39 148-186 7-46 (237)
432 PF01494 FAD_binding_3: FAD bi 93.8 0.055 1.2E-06 55.7 3.8 33 149-181 3-35 (356)
433 PRK05868 hypothetical protein; 93.8 0.053 1.1E-06 57.0 3.7 36 147-182 1-36 (372)
434 PLN02968 Probable N-acetyl-gam 93.7 0.12 2.5E-06 54.4 6.0 102 146-268 37-140 (381)
435 PRK14178 bifunctional 5,10-met 93.7 0.2 4.4E-06 49.9 7.3 72 148-263 153-225 (279)
436 PRK07236 hypothetical protein; 93.7 0.074 1.6E-06 56.1 4.5 36 146-181 5-40 (386)
437 COG0499 SAM1 S-adenosylhomocys 93.7 0.27 5.8E-06 50.0 8.0 85 148-260 210-294 (420)
438 PRK11259 solA N-methyltryptoph 93.6 0.069 1.5E-06 55.9 4.1 33 148-180 4-36 (376)
439 PRK07831 short chain dehydroge 93.6 0.16 3.4E-06 50.3 6.4 41 148-188 18-60 (262)
440 TIGR03215 ac_ald_DH_ac acetald 93.5 0.34 7.3E-06 48.7 8.5 90 149-264 3-97 (285)
441 cd05211 NAD_bind_Glu_Leu_Phe_V 93.4 0.19 4E-06 48.5 6.4 33 148-180 24-57 (217)
442 PF00899 ThiF: ThiF family; I 93.4 0.087 1.9E-06 46.7 3.9 33 148-180 3-36 (135)
443 TIGR01377 soxA_mon sarcosine o 93.4 0.076 1.6E-06 55.7 4.1 32 149-180 2-33 (380)
444 PRK08163 salicylate hydroxylas 93.4 0.07 1.5E-06 56.4 3.8 34 148-181 5-38 (396)
445 PRK05866 short chain dehydroge 93.4 0.16 3.4E-06 51.5 6.1 39 148-186 41-80 (293)
446 cd01486 Apg7 Apg7 is an E1-lik 93.3 0.035 7.6E-07 55.7 1.3 31 149-179 1-32 (307)
447 PRK07774 short chain dehydroge 93.3 0.15 3.3E-06 49.8 5.8 38 148-185 7-45 (250)
448 PRK07832 short chain dehydroge 93.3 0.19 4.2E-06 50.0 6.6 38 149-186 2-40 (272)
449 cd01079 NAD_bind_m-THF_DH NAD 93.3 0.36 7.9E-06 45.3 7.8 87 148-264 63-158 (197)
450 KOG1200 Mitochondrial/plastidi 93.3 1.1 2.5E-05 41.8 10.7 39 148-186 14-54 (256)
451 PRK07062 short chain dehydroge 93.3 0.17 3.6E-06 50.2 6.0 40 148-187 9-49 (265)
452 PRK14852 hypothetical protein; 93.2 0.19 4.2E-06 58.0 7.1 33 148-180 333-366 (989)
453 PRK06196 oxidoreductase; Provi 93.2 0.2 4.2E-06 51.3 6.6 41 148-188 27-68 (315)
454 PRK07890 short chain dehydroge 93.2 0.2 4.3E-06 49.3 6.4 39 148-186 6-45 (258)
455 COG1062 AdhC Zn-dependent alco 93.1 1.6 3.4E-05 44.5 12.4 40 148-187 187-227 (366)
456 PRK12429 3-hydroxybutyrate deh 93.1 0.18 3.8E-06 49.5 6.0 39 148-186 5-44 (258)
457 PRK06753 hypothetical protein; 93.1 0.086 1.9E-06 55.2 3.9 34 148-181 1-34 (373)
458 PRK01747 mnmC bifunctional tRN 93.1 0.081 1.8E-06 60.1 4.0 33 148-180 261-293 (662)
459 cd01491 Ube1_repeat1 Ubiquitin 93.1 1.2 2.5E-05 44.9 11.7 33 148-180 20-53 (286)
460 COG0665 DadA Glycine/D-amino a 93.0 0.1 2.2E-06 54.8 4.3 35 147-181 4-38 (387)
461 COG0673 MviM Predicted dehydro 93.0 0.46 9.9E-06 49.0 9.1 73 146-240 2-81 (342)
462 PRK06057 short chain dehydroge 93.0 0.16 3.4E-06 50.0 5.5 38 148-185 8-46 (255)
463 PRK07411 hypothetical protein; 92.9 0.081 1.8E-06 55.9 3.4 33 148-180 39-72 (390)
464 PRK13394 3-hydroxybutyrate deh 92.9 0.2 4.3E-06 49.3 6.1 41 148-188 8-49 (262)
465 PF05368 NmrA: NmrA-like famil 92.9 0.88 1.9E-05 44.1 10.5 32 150-181 1-33 (233)
466 PRK05786 fabG 3-ketoacyl-(acyl 92.9 0.46 9.9E-06 46.0 8.4 39 148-186 6-45 (238)
467 cd05295 MDH_like Malate dehydr 92.9 0.55 1.2E-05 50.1 9.5 98 148-259 124-247 (452)
468 PRK08773 2-octaprenyl-3-methyl 92.9 0.11 2.3E-06 55.0 4.2 34 147-180 6-39 (392)
469 TIGR03364 HpnW_proposed FAD de 92.9 0.11 2.3E-06 54.4 4.1 32 149-180 2-33 (365)
470 cd05312 NAD_bind_1_malic_enz N 92.8 0.55 1.2E-05 46.8 8.7 128 148-290 26-173 (279)
471 PRK06847 hypothetical protein; 92.8 0.099 2.2E-06 54.7 3.8 35 147-181 4-38 (375)
472 PRK11728 hydroxyglutarate oxid 92.8 0.1 2.2E-06 55.2 4.0 33 148-180 3-37 (393)
473 PRK05335 tRNA (uracil-5-)-meth 92.8 0.11 2.3E-06 55.1 3.9 35 147-181 2-36 (436)
474 PRK07825 short chain dehydroge 92.7 0.26 5.6E-06 49.1 6.5 39 148-186 6-45 (273)
475 PRK00141 murD UDP-N-acetylmura 92.7 0.27 5.8E-06 53.4 7.1 37 146-182 14-50 (473)
476 PRK10538 malonic semialdehyde 92.7 0.2 4.3E-06 49.1 5.6 38 148-185 1-39 (248)
477 TIGR01850 argC N-acetyl-gamma- 92.6 0.33 7.2E-06 50.4 7.4 100 148-268 1-105 (346)
478 PRK05650 short chain dehydroge 92.6 0.24 5.1E-06 49.3 6.1 39 149-187 2-41 (270)
479 TIGR00137 gid_trmFO tRNA:m(5)U 92.6 0.11 2.4E-06 55.2 3.7 33 149-181 2-34 (433)
480 PRK14176 bifunctional 5,10-met 92.5 0.33 7.1E-06 48.6 6.8 72 148-264 165-238 (287)
481 PRK07067 sorbitol dehydrogenas 92.5 0.17 3.7E-06 49.8 4.9 39 148-186 7-46 (257)
482 PRK10792 bifunctional 5,10-met 92.5 0.35 7.6E-06 48.4 7.0 70 148-262 160-231 (285)
483 PRK03369 murD UDP-N-acetylmura 92.5 0.23 5E-06 54.2 6.3 35 148-182 13-47 (488)
484 PRK07588 hypothetical protein; 92.5 0.11 2.4E-06 54.8 3.7 34 148-181 1-34 (391)
485 PRK06475 salicylate hydroxylas 92.5 0.11 2.3E-06 55.2 3.6 34 148-181 3-36 (400)
486 PRK14982 acyl-ACP reductase; P 92.4 0.27 5.9E-06 50.6 6.3 38 148-185 156-196 (340)
487 PRK07494 2-octaprenyl-6-methox 92.4 0.12 2.6E-06 54.4 3.9 34 148-181 8-41 (388)
488 PRK02472 murD UDP-N-acetylmura 92.4 0.79 1.7E-05 49.3 10.2 34 148-181 6-39 (447)
489 PRK08277 D-mannonate oxidoredu 92.4 0.25 5.5E-06 49.3 6.0 38 148-185 11-49 (278)
490 TIGR01381 E1_like_apg7 E1-like 92.3 0.093 2E-06 57.8 2.9 32 148-179 339-371 (664)
491 PRK09414 glutamate dehydrogena 92.3 0.41 8.9E-06 51.1 7.6 81 148-240 233-325 (445)
492 PRK07538 hypothetical protein; 92.2 0.13 2.7E-06 54.9 3.8 34 148-181 1-34 (413)
493 PRK08340 glucose-1-dehydrogena 92.2 0.31 6.7E-06 48.1 6.3 40 149-188 2-42 (259)
494 TIGR01408 Ube1 ubiquitin-activ 92.2 0.53 1.2E-05 55.5 9.0 167 148-322 420-611 (1008)
495 PRK14874 aspartate-semialdehyd 92.1 0.18 3.9E-06 52.1 4.7 93 148-267 2-99 (334)
496 COG0654 UbiH 2-polyprenyl-6-me 92.1 0.14 3E-06 54.1 3.9 32 148-179 3-34 (387)
497 PRK05732 2-octaprenyl-6-methox 92.1 0.14 3.1E-06 53.9 4.1 32 148-179 4-38 (395)
498 PRK08013 oxidoreductase; Provi 92.1 0.13 2.8E-06 54.5 3.7 34 148-181 4-37 (400)
499 PRK06139 short chain dehydroge 92.1 0.25 5.5E-06 51.0 5.7 41 148-188 8-49 (330)
500 cd00762 NAD_bind_malic_enz NAD 92.1 0.73 1.6E-05 45.2 8.4 129 148-290 26-174 (254)
No 1
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=100.00 E-value=8.2e-107 Score=903.33 Aligned_cols=540 Identities=32% Similarity=0.495 Sum_probs=485.5
Q ss_pred CccCCCCCCHHHHHhCCCcceecCC-------------chHHHHHHHHHHhhhccCCccchhccccCCCCC-----hHHH
Q 008509 1 MMLLSKSITSEEGWKLGLIDAVVTS-------------EELLKVSRLWALDIAARRKPWIRSLHRTDKLGS-----LSEA 62 (563)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~-------------~~l~~~A~~~a~~~~~~~~p~~~~~~~~~~~~~-----~~~~ 62 (563)
|+|||++++|+||+++||||+|||+ +++.+.|.+++++++....+..+.....+++.+ ....
T Consensus 174 l~ltG~~i~a~eA~~~GLVd~vv~~~~~~~~~l~~~~~~~l~~~A~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (737)
T TIGR02441 174 MMLTGKKIRADRAKKMGIVDQLVDPLGPGLKPAEENTIEYLEEVAVKFAQGLANGKLSINRDKGLVHKITQYVMTNPFVR 253 (737)
T ss_pred HHHcCCcCCHHHHHHCCCCeEecCCcccccccchhhhHHHHHHHHHHHHHHhhcccCCccccccccCccchhhcccchhH
Confidence 5899999999999999999999987 568889999998876533111111111111111 0123
Q ss_pred HHHHHHHHHH-HHhhCCCChhHHHHHHHHHHhhccCchhhHHHHHHHHHHHhcCHHHHHHHHHHhhhhhhccCCCCCCCC
Q 008509 63 REVLKLARLQ-AKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIG 141 (563)
Q Consensus 63 ~~~~~~~~~~-~~~~~~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~~kr~~~k~~~~~~~~ 141 (563)
...+..++++ .++++++||||.+++++|+.+...+++++|+.|+++|.+|+.|+++++++++||.+|.++|.+. +
T Consensus 254 ~~~~~~~~~~~~~~~~g~~~Ap~~~l~~v~~~~~~~~~~gl~~E~~~f~~l~~s~~a~al~~~f~~~~~~~~~~~----~ 329 (737)
T TIGR02441 254 QQVYKTAEDKVMKQTKGLYPAPLKILDVVRTGYDQGPDAGYEAESKAFGELSMTFESKALIGLFHGQTDCKKNKF----G 329 (737)
T ss_pred HHHHHHHHHHHHHhccCCCccHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccCCCC----C
Confidence 4456666666 4488889999999999999999999999999999999999999999999999999999977643 1
Q ss_pred CCCccceeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCc
Q 008509 142 LKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY 221 (563)
Q Consensus 142 ~~~~~~~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 221 (563)
..+++|++|+|||+|+||++||..++.+|++|+++|++++.++++.+++++.+++.+++|.+++.+.+..+++|++++|+
T Consensus 330 ~~~~~i~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~ 409 (737)
T TIGR02441 330 KPQRPVKTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDY 409 (737)
T ss_pred CCCCcccEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCH
Confidence 23468999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhhhccCCCceeecccCCCCCCCCeEEEEeCC
Q 008509 222 SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTE 301 (563)
Q Consensus 222 ~~l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS~l~i~~la~~~~~~~r~ig~hf~~P~~~~~lvEiv~~~ 301 (563)
+++++||+|||||||++++|+++|++|++++++++||+||||++++++|++.+.+|+||+|+|||||++.|+||||++++
T Consensus 410 ~~~~~aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~ig~Hff~P~~~m~LvEvv~g~ 489 (737)
T TIGR02441 410 SGFKNADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSALPIKDIAAVSSRPEKVIGMHYFSPVDKMQLLEIITHD 489 (737)
T ss_pred HHhccCCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCccceEEEeccCCcccCceEEEeCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhCCceEEecCcchhhhHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhcCCCccHHHHhhhhchHH
Q 008509 302 RTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGV 381 (563)
Q Consensus 302 ~t~~~~~~~~~~l~~~lGk~~v~~~d~~Gfi~nRl~~~~~~Ea~~l~~~G~~~~~ID~a~~~~G~p~GPf~~~D~~Gld~ 381 (563)
.|++++++.+..+++.+||.||+++|+|||++||++.++++||++++++|+++++||+++.++|||||||+++|.+|+|+
T Consensus 490 ~Ts~~~~~~~~~~~~~lgk~pv~v~d~pGFi~NRi~~~~~~ea~~lv~eGv~~~~ID~a~~~~G~p~GP~~l~D~vGld~ 569 (737)
T TIGR02441 490 GTSKDTLASAVAVGLKQGKVVIVVKDGPGFYTTRCLGPMLAEVIRLLQEGVDPKKLDKLTTKFGFPVGAATLADEVGVDV 569 (737)
T ss_pred CCCHHHHHHHHHHHHHCCCeEEEECCcCCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCCCHHHHHHHhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCC--chHHHHHHHHcCCCCcccCccccccCCCC--CCCCCCCchhHHHHHhhhccCCCCCCCccc
Q 008509 382 AAATSKEFDKAFPDRSF--QSPLVDLLLKSGRNGKANGKGLYTYEKGS--KPKPDPSVLPIIEECRRLSNIMPGGKPISV 457 (563)
Q Consensus 382 ~~~~~~~l~~~~~~~~~--~~~~l~~l~~~g~~G~k~g~GFY~y~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (563)
+.++.+.++..+++++. +++++++|+++|++|+|+|+|||+|++++ ++.++|++..++..... .+ .....
T Consensus 570 ~~~v~~~l~~~~~~~~~~~~~~~l~~~v~~G~~G~k~G~GfY~y~~~~~~~~~~~~~v~~~~~~~~k----~p--~~~~~ 643 (737)
T TIGR02441 570 AEHVAEDLGKAFGERFGGGSAELLSELVKAGFLGRKSGKGIFIYQEGKKGSKKVNSDADEILAQYKL----PP--KAEVS 643 (737)
T ss_pred HHHHHHHHHHhcCcccccccCHHHHHHHHCCCCcccCCCeeEEcCCCCCCcCCCCHHHHHHHHHhcc----Cc--ccccC
Confidence 99999999998887653 68999999999999999999999998653 46788888777654321 01 00135
Q ss_pred chHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCcHhHHHHHhCHHHHHHHHHHHHHHhCCCCCCCH
Q 008509 458 TEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSR 537 (563)
Q Consensus 458 ~~~~i~~r~l~~~~~ea~~~l~~gv~~~~~diD~~~~~g~g~p~~~gGp~~~~d~~G~~~~~~~~~~~~~~~~~~~~p~~ 537 (563)
++++|+||++++++|||++|++|||+.+|+|||.+|++|+|||+|+||||+|+|.+|++.++++++.+++.+|++|.|++
T Consensus 644 ~~g~I~~Rll~~~~nEA~rlLeEGV~a~~~DID~a~~~G~GfP~~~gGP~~~aD~~Gld~v~~~~~~l~~~~g~~~~p~~ 723 (737)
T TIGR02441 644 SPEDIQIRLVSRFVNEAVLCLEEGILASPSEGDIGAVFGLGFPPFLGGPFRFVDLYGADKLVDKMEKYAAAYGVQFTPCQ 723 (737)
T ss_pred ChHHHHHHHHHHHHHHHHHHhhcCccCCHHHHHHHHHhCCCCCCccCCHHHHHHHhCHHHHHHHHHHHHHHhCCCcCCCH
Confidence 78999999999999999999999997799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHc-CCCcc
Q 008509 538 FLEERATK-GIPLS 550 (563)
Q Consensus 538 ~l~~~~~~-g~~f~ 550 (563)
+|++|+++ |++||
T Consensus 724 lL~~~~~~~g~~f~ 737 (737)
T TIGR02441 724 LLLDHAKSPGKKFY 737 (737)
T ss_pred HHHHHHHhcCCCCC
Confidence 99999999 99997
No 2
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=100.00 E-value=2.3e-104 Score=882.20 Aligned_cols=537 Identities=30% Similarity=0.515 Sum_probs=481.0
Q ss_pred CccCCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCccchhccccCCCC----ChHHHHHHHHHHHH-HHHh
Q 008509 1 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLG----SLSEAREVLKLARL-QAKK 75 (563)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~~~~~~~p~~~~~~~~~~~~----~~~~~~~~~~~~~~-~~~~ 75 (563)
|+|||++++|++|+++||||+++|++++.+.|.++++++.....+|.+... .... +.......+..++. ..++
T Consensus 166 llltG~~~~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (714)
T TIGR02437 166 WIASGKENRAEDALKVGAVDAVVTADKLGAAALQLLKDAINGKLDWKAKRQ--PKLEPLKLSKIEAMMSFTTAKGMVAQV 243 (714)
T ss_pred HHHcCCcCCHHHHHHCCCCcEeeChhHHHHHHHHHHHHHhhcCCcccccCC--CCcccccccchHHHHHHHHHHHHHHHh
Confidence 589999999999999999999999999999999999886553222221111 1111 11111223445555 4558
Q ss_pred hCCCChhHHHHHHHHHHhhccCchhhHHHHHHHHHHHhcCHHHHHHHHHHhhhhhhccCCCCCCCCCCCccceeEEEEcC
Q 008509 76 TAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLKPRGVRKVAVIGG 155 (563)
Q Consensus 76 ~~~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~~kr~~~k~~~~~~~~~~~~~~~kv~ViGa 155 (563)
++++||||..++++|+.+...+++++|+.|++.|.+|+.|+++++++++||.+|.+++.+.. .+..++++++|+|||+
T Consensus 244 ~~~~~pap~~~~~~v~~~~~~~~~~gl~~E~~~f~~l~~s~~a~~l~~~ff~~r~~~~~~~~--~~~~~~~i~~v~ViGa 321 (714)
T TIGR02437 244 AGPHYPAPMTAVKTIEKAARFGRDKALEIEAKGFVKLAKTSEAKALIGLFLNDQYVKGKAKK--ADKIAKDVKQAAVLGA 321 (714)
T ss_pred hcCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhhhHhhcCCCCC--CCCCccccceEEEECC
Confidence 99999999999999999999999999999999999999999999999999999999776421 1234678999999999
Q ss_pred CcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCcccccCCCEEEEecC
Q 008509 156 GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVI 235 (563)
Q Consensus 156 G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aDlVieav~ 235 (563)
|+||++||..++.+|++|+++|++++.++++.+++++.+++.+++|.+++++.+..+++|+++++++++++||+||||||
T Consensus 322 G~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlViEav~ 401 (714)
T TIGR02437 322 GIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSYAGFDNVDIVVEAVV 401 (714)
T ss_pred chHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHHhcCCCEEEEcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhhhccCCCceeecccCCCCCCCCeEEEEeCCCCCHHHHHHHHHHH
Q 008509 236 ESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVG 315 (563)
Q Consensus 236 e~~~~k~~v~~~l~~~~~~~~ii~sntS~l~i~~la~~~~~~~r~ig~hf~~P~~~~~lvEiv~~~~t~~~~~~~~~~l~ 315 (563)
|++++|+++|++|++++++++||+||||++++++|++.+.+|+||+|+|||||++.|+||||++++.|++++++.+.+++
T Consensus 402 E~l~~K~~vf~~l~~~~~~~~ilasnTS~l~i~~ia~~~~~p~r~ig~Hff~P~~~~~lvEvv~g~~Ts~~~~~~~~~~~ 481 (714)
T TIGR02437 402 ENPKVKAAVLAEVEQHVREDAILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEKSSDETIATVVAYA 481 (714)
T ss_pred ccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEecCCCcccCceEeecCCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCceEEecCcchhhhHHHHHHHHHHHHHHHHCCCCHHHHHHHH-HhcCCCccHHHHhhhhchHHHHHHHHHHHHhCC
Q 008509 316 KIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFP 394 (563)
Q Consensus 316 ~~lGk~~v~~~d~~Gfi~nRl~~~~~~Ea~~l~~~G~~~~~ID~a~-~~~G~p~GPf~~~D~~Gld~~~~~~~~l~~~~~ 394 (563)
+.+||+||+++|+|||++||++.++++||++++++|+++++||++| .++|||||||+++|.+|+|+++++.+.+...++
T Consensus 482 ~~lgk~pv~v~d~pGfi~NRl~~~~~~ea~~l~~eG~~~~~ID~a~~~~~G~p~GPf~l~D~~Gld~~~~i~~~~~~~~~ 561 (714)
T TIGR02437 482 SKMGKTPIVVNDCPGFFVNRVLFPYFGGFSKLLRDGADFVRIDKVMEKQFGWPMGPAYLLDVVGIDTGHHAQAVMAEGFP 561 (714)
T ss_pred HHcCCEEEEeCCcccchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhcCCCccCHHHHHHhhhHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999 789999999999999999999999999998888
Q ss_pred CCCC--chHHHHHHHHcCCCCcccCccccccCCC---C-CCCCCCCchhHHHHHhhhccCCCCCCCcccchHHHHHHHHH
Q 008509 395 DRSF--QSPLVDLLLKSGRNGKANGKGLYTYEKG---S-KPKPDPSVLPIIEECRRLSNIMPGGKPISVTEKEIVEMILF 468 (563)
Q Consensus 395 ~~~~--~~~~l~~l~~~g~~G~k~g~GFY~y~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~l~ 468 (563)
++.. +++++++|+++|++|+|+|+|||+|+++ + ++..|+++..++...+. ....+++++|+||++.
T Consensus 562 ~~~~~~~~~~l~~~v~~G~lG~K~g~GfY~y~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~i~~Rll~ 633 (714)
T TIGR02437 562 DRMGKDGRDAIDALFEAKRLGQKNGKGFYAYEADKKGKPKKLVDSSVLELLKPVVY--------EQRDFDDEEIIARMMI 633 (714)
T ss_pred cccccchhHHHHHHHHCCCCcccCCCEEEecccCcCccccCCCCHHHHHHHHHhhc--------ccCCCCHHHHHHHHHH
Confidence 7642 4689999999999999999999999643 1 35577777666543311 0124678899999999
Q ss_pred HHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCcHhHHHHHhCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHcCCC
Q 008509 469 PVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGIP 548 (563)
Q Consensus 469 ~~~~ea~~~l~~gv~~~~~diD~~~~~g~g~p~~~gGp~~~~d~~G~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~g~~ 548 (563)
+++||+++|++|||+.+++|||.+|++|+|||+|+||||+|+|.+|++.+++.++.+. .+|++|.|+++|++|+++|++
T Consensus 634 ~~~nEa~~ll~eGiva~~~dID~~~~~G~Gfp~~~gGP~~~~D~~Gl~~~~~~~~~~~-~~g~~~~p~~~l~~~~~~g~~ 712 (714)
T TIGR02437 634 PMINETVRCLEEGIVATAAEADMGLVYGLGFPPFRGGAFRYLDSIGVANFVALADQYA-ELGALYQVTAKLREMAKNGQS 712 (714)
T ss_pred HHHHHHHHHHhCCCcCCHHHHHHHHHhCCCCCCccCCHHHHHHHhCHHHHHHHHHHHH-HhCCCCCCCHHHHHHHHcCCC
Confidence 9999999999999777999999999999999999999999999999999999999765 789999999999999999999
Q ss_pred cc
Q 008509 549 LS 550 (563)
Q Consensus 549 f~ 550 (563)
||
T Consensus 713 f~ 714 (714)
T TIGR02437 713 FY 714 (714)
T ss_pred CC
Confidence 97
No 3
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=100.00 E-value=3.7e-102 Score=864.88 Aligned_cols=533 Identities=33% Similarity=0.542 Sum_probs=478.3
Q ss_pred CccCCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCccchhccccCCC--CChHHHHHHHHHHHHH-HHhhC
Q 008509 1 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKL--GSLSEAREVLKLARLQ-AKKTA 77 (563)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~~~~~~~p~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~ 77 (563)
|+|||++++|+||+++||||+|||++++++.|.++|++. . +.++.......+ .++......++.+.++ .++++
T Consensus 162 llltG~~~~a~eA~~~GLV~~vv~~~~l~~~a~~~A~~~-~---~~~~~~~~~~~~~~~~~~a~~~~~~~~~k~~~~~~~ 237 (699)
T TIGR02440 162 MILTGKQLRAKQALKLGLVDDVVPQSILLDTAVEMALKG-K---PIRKPLSLQERLLEGTPLGRALLFDQAAKKTAKKTQ 237 (699)
T ss_pred HHHcCCcCCHHHHHhCCCCcEecChhHHHHHHHHHHHhC-C---CCCCCccchhhhcccCchhHHHHHHHHHHHHHHhcc
Confidence 578999999999999999999999999999999999751 1 100100000011 0111122334444444 45888
Q ss_pred CCChhHHHHHHHHHHhhccCchhhHHHHHHHHHHHhcCHHHHHHHHHHhhhhhhccCCCCCCCCCCCccceeEEEEcCCc
Q 008509 78 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLKPRGVRKVAVIGGGL 157 (563)
Q Consensus 78 ~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~~kr~~~k~~~~~~~~~~~~~~~kv~ViGaG~ 157 (563)
++|||+.++|++++++...+++++++.|++.|..++.|+|+++++++|+.++..++.++. ....+++++|+|||+|+
T Consensus 238 ~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~~f~~~~~~~~~~~~---~~~~~~i~~v~ViGaG~ 314 (699)
T TIGR02440 238 GNYPAAERILDVVRQGLAQGMQKGLDAEARAFGELVMTPESAALRSIFFATTEMKKETGS---DATPAKIKKVGILGGGL 314 (699)
T ss_pred cCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCC---CCCcccccEEEEECCcH
Confidence 999999999999999999999999999999999999999999999999999998776542 12346789999999999
Q ss_pred chHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCcccccCCCEEEEecCC
Q 008509 158 MGSGIATAHI-LNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIE 236 (563)
Q Consensus 158 mG~~iA~~la-~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aDlVieav~e 236 (563)
||++||..++ ++|++|+++|++++.++++..++.+.+++++++|.+++++.+..+++|+++++++++++||+|||||||
T Consensus 315 mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~adlViEav~E 394 (699)
T TIGR02440 315 MGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDYRGFKDVDIVIEAVFE 394 (699)
T ss_pred HHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCChHHhccCCEEEEeccc
Confidence 9999999998 589999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhhhccCCCceeecccCCCCCCCCeEEEEeCCCCCHHHHHHHHHHHH
Q 008509 237 SVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGK 316 (563)
Q Consensus 237 ~~~~k~~v~~~l~~~~~~~~ii~sntS~l~i~~la~~~~~~~r~ig~hf~~P~~~~~lvEiv~~~~t~~~~~~~~~~l~~ 316 (563)
++++|+++|++|++++++++||+||||++++++|++.+.+|+||+|+|||||++.|++|||++++.|++++++.+..+++
T Consensus 395 ~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~~~~~p~r~~g~HffnP~~~~~lVEvv~g~~T~~~~~~~~~~~~~ 474 (699)
T TIGR02440 395 DLALKHQMVKDIEQECAAHTIFASNTSSLPIGQIAAAASRPENVIGLHYFSPVEKMPLVEVIPHAGTSEQTIATTVALAK 474 (699)
T ss_pred cHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHHHHHhcCCcccEEEEecCCccccCceEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCceEEecCcchhhhHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhcCCCccHHHHhhhhchHHHHHHHHHHHHhCCCC
Q 008509 317 IIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDR 396 (563)
Q Consensus 317 ~lGk~~v~~~d~~Gfi~nRl~~~~~~Ea~~l~~~G~~~~~ID~a~~~~G~p~GPf~~~D~~Gld~~~~~~~~l~~~~~~~ 396 (563)
.+||.||+++|+|||++||++.++++||++++++|+++++||.++.++|||||||+++|.+|+|++.++++.+++.++++
T Consensus 475 ~~gk~pv~v~d~pGfi~nRl~~~~~~Ea~~l~~~G~~~~dID~a~~~~G~p~GPf~l~D~vGld~~~~i~~~l~~~~~~~ 554 (699)
T TIGR02440 475 KQGKTPIVVADKAGFYVNRILAPYMNEAARLLLEGEPVEHIDKALVKFGFPVGPITLLDEVGIDVGAKISPILEAELGER 554 (699)
T ss_pred HcCCeEEEEccccchHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHcCCCcCHHHHHHHhchHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999988999999999999999999999999999999987
Q ss_pred CCchHHHHHHHHcCCCCcccCccccccCCC-CCCCCCCCchhHHHHHhhhccCCCCCCCcccchHHHHHHHHHHHHHHHH
Q 008509 397 SFQSPLVDLLLKSGRNGKANGKGLYTYEKG-SKPKPDPSVLPIIEECRRLSNIMPGGKPISVTEKEIVEMILFPVVNESC 475 (563)
Q Consensus 397 ~~~~~~l~~l~~~g~~G~k~g~GFY~y~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~l~~~~~ea~ 475 (563)
+.+++++++|+++|++|+|+|+|||+|+++ +++..++++..++.. .+ ...+++++|+||++.+++|||+
T Consensus 555 ~~~~~~l~~~v~~G~lG~ksg~GfY~y~~~~~~~~~~~~~~~~~~~-------~~---~~~~~~g~v~~Rll~~~~~Ea~ 624 (699)
T TIGR02440 555 FKAPAVFDKLLSDDRKGRKNGKGFYLYGAATKKKAVDESVYGLLGI-------KP---GVDKEASAVAERCVMLMLNEAV 624 (699)
T ss_pred CCCcHHHHHHHHCCCCcccCCcEEEeCCCCCCcCCCCHHHHHHhCc-------CC---CCCCCHHHHHHHHHHHHHHHHH
Confidence 778899999999999999999999999753 345666666544311 11 1246789999999999999999
Q ss_pred HHhhcCcCCChhHHHHHHHHhcCCCCCCCcHhHHHHHhCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHcCCCcc
Q 008509 476 RVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGIPLS 550 (563)
Q Consensus 476 ~~l~~gv~~~~~diD~~~~~g~g~p~~~gGp~~~~d~~G~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~g~~f~ 550 (563)
+|++|||+.+|+|||.+|++|+|||+|+||||+++|.+|++.+++.++.+++.+|++|.|+++|++|+++|++||
T Consensus 625 ~ll~eGvva~~~dID~~~~~g~G~p~~~~Gpf~~~D~~Gld~~~~~~~~l~~~~g~~~~p~~~L~~~~~~~~~f~ 699 (699)
T TIGR02440 625 RCLDEGVIRSPRDGDIGAIFGIGFPPFLGGPFRYIDTLGADNVVKILERLQTQYGDRFTPCQRLVAMAAEKQSFY 699 (699)
T ss_pred HHHHCCCcCCHHHHHHHHHhcCCCCCCcCCHHHHHHHhCHHHHHHHHHHHHHHcCCCcCCCHHHHHHHHcCCCcC
Confidence 999999966999999999999999999999999999999999999999999999999999999999999999997
No 4
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=100.00 E-value=7.7e-102 Score=864.56 Aligned_cols=534 Identities=35% Similarity=0.551 Sum_probs=480.6
Q ss_pred CccCCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCccchhccccCCCC--ChHHHHHHHHHHHHH-HHhhC
Q 008509 1 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLG--SLSEAREVLKLARLQ-AKKTA 77 (563)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~~~~~~~p~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~ 77 (563)
|+|||++++|+||+++||||++||++++.+.|.++|+++.... +.......+. ++......++.++++ .++++
T Consensus 167 llltG~~i~a~eA~~~GLv~~vv~~~~l~~~a~~~A~~~~~~~----~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 242 (708)
T PRK11154 167 MILTGKQLRAKQALKLGLVDDVVPHSILLEVAVELAKKGKPAR----RPLPVRERLLEGNPLGRALLFKQARKKTLAKTQ 242 (708)
T ss_pred HHHhCCcCCHHHHHHCCCCcEecChHHHHHHHHHHHHhcCCcc----CcCCchhhhcccCchhHHHHHHHHHHHHHHhcc
Confidence 5799999999999999999999999999999999998842111 1000000011 112224455666666 44889
Q ss_pred CCChhHHHHHHHHHHhhccCchhhHHHHHHHHHHHhcCHHHHHHHHHHhhhhhhccCCCCCCCCCCCccceeEEEEcCCc
Q 008509 78 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLKPRGVRKVAVIGGGL 157 (563)
Q Consensus 78 ~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~~kr~~~k~~~~~~~~~~~~~~~kv~ViGaG~ 157 (563)
++|+|+..+|++++.+...+++++++.|.++|..++.|+++++++++|+.++.+++.++. . ..++++++|+|||+|+
T Consensus 243 g~~~A~~~~k~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~aF~~~~~~~~~~~~-~--~~~~~i~~v~ViGaG~ 319 (708)
T PRK11154 243 GNYPAPERILDVVRTGLEKGMSSGYEAEARAFGELAMTPESAALRSIFFATTEMKKDTGS-D--AKPRPVNKVGVLGGGL 319 (708)
T ss_pred cCChHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCCCC-C--CCCCcccEEEEECCch
Confidence 999999999999999998999999999999999999999999999999999998776542 1 2346899999999999
Q ss_pred chHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCcccccCCCEEEEecCC
Q 008509 158 MGSGIATAHI-LNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIE 236 (563)
Q Consensus 158 mG~~iA~~la-~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aDlVieav~e 236 (563)
||++||..++ .+|++|+++|++++.++++..++.+.+++++++|.+++.+.+..+++|+++++++++++||+|||||||
T Consensus 320 mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~aDlViEav~E 399 (708)
T PRK11154 320 MGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDYRGFKHADVVIEAVFE 399 (708)
T ss_pred hhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCChHHhccCCEEeecccc
Confidence 9999999999 889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhhhccCCCceeecccCCCCCCCCeEEEEeCCCCCHHHHHHHHHHHH
Q 008509 237 SVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGK 316 (563)
Q Consensus 237 ~~~~k~~v~~~l~~~~~~~~ii~sntS~l~i~~la~~~~~~~r~ig~hf~~P~~~~~lvEiv~~~~t~~~~~~~~~~l~~ 316 (563)
++++|+++|++++++++|++||+||||++++++|++.+.+|+||+|+|||||++.|+||||++++.|++++++.+..+++
T Consensus 400 ~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~~la~~~~~p~r~ig~Hff~P~~~~~lVEvv~g~~Ts~~~~~~~~~~~~ 479 (708)
T PRK11154 400 DLALKQQMVAEVEQNCAPHTIFASNTSSLPIGQIAAAAARPEQVIGLHYFSPVEKMPLVEVIPHAKTSAETIATTVALAK 479 (708)
T ss_pred cHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhcCcccceEEEecCCccccCceEEEECCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCceEEecCcchhhhHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhcCCCccHHHHhhhhchHHHHHHHHHHHHhCCCC
Q 008509 317 IIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDR 396 (563)
Q Consensus 317 ~lGk~~v~~~d~~Gfi~nRl~~~~~~Ea~~l~~~G~~~~~ID~a~~~~G~p~GPf~~~D~~Gld~~~~~~~~l~~~~~~~ 396 (563)
.+||.|++++|+|||++||++.++++||++++++|+++++||.++.++|||+|||+++|.+|+|++.++++.+++.++++
T Consensus 480 ~~gk~pv~v~d~pGfi~nRl~~~~~~EA~~lv~eGv~~~dID~a~~~~G~p~GPf~~~D~~Gld~~~~i~~~l~~~~~~~ 559 (708)
T PRK11154 480 KQGKTPIVVRDGAGFYVNRILAPYINEAARLLLEGEPIEHIDAALVKFGFPVGPITLLDEVGIDVGTKIIPILEAALGER 559 (708)
T ss_pred HcCCceEEEeccCcHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCCCHHHHHHHhhhHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999988999999999999999999999999999988877
Q ss_pred CCchHHHHHHHHcCCCCcccCccccccCCCC---CCCCCCCchhHHHHHhhhccCCCCCCCcccchHHHHHHHHHHHHHH
Q 008509 397 SFQSPLVDLLLKSGRNGKANGKGLYTYEKGS---KPKPDPSVLPIIEECRRLSNIMPGGKPISVTEKEIVEMILFPVVNE 473 (563)
Q Consensus 397 ~~~~~~l~~l~~~g~~G~k~g~GFY~y~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~l~~~~~e 473 (563)
+.+++++++|+++|++|+|+|+|||+|+++. ++..++++...+.. .+ ...+++++|+||++.+++||
T Consensus 560 ~~~~~~l~~~v~~g~~G~k~g~GfY~y~~~~~~~~~~~~~~~~~~~~~-------~~---~~~~~~g~i~~Rll~~~~nE 629 (708)
T PRK11154 560 FSAPAAFDKLLNDDRKGRKNGRGFYLYGQKGKKSKKQVDESVYPLLGI-------TP---QSRLSANEIAERCVMLMLNE 629 (708)
T ss_pred CCCCHHHHHHHHCCCCcccCCceEEECCCCcccccccCCHHHHHHhcc-------CC---CCCCCHHHHHHHHHHHHHHH
Confidence 7788999999999999999999999997532 24456655443311 11 12478999999999999999
Q ss_pred HHHHhhcCcCCChhHHHHHHHHhcCCCCCCCcHhHHHHHhCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHcCCCccC
Q 008509 474 SCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGIPLSA 551 (563)
Q Consensus 474 a~~~l~~gv~~~~~diD~~~~~g~g~p~~~gGp~~~~d~~G~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~g~~f~~ 551 (563)
|++|++|||+.+++|||.+|++|+|||+|+||||+++|.+|++.+++.++.+++.+|++|.|+++|++|+++|++||.
T Consensus 630 a~~ll~eGvva~~~dID~~~~~G~G~p~~~gGp~~~~D~~Gld~~~~~~~~l~~~~~~~~~p~~~l~~~~~~~~~f~~ 707 (708)
T PRK11154 630 AVRCLDEGIIRSARDGDIGAVFGIGFPPFLGGPFRYMDSLGAGEVVAILERLAAQYGDRFTPCERLVEMAERGESFYP 707 (708)
T ss_pred HHHHHHCCCcCCHHHHHHHHHhcCCCCCccCCHHHHHHHhCHHHHHHHHHHHHHhcCCccCCCHHHHHHHHcCCCCCC
Confidence 999999999669999999999999999999999999999999999999999999999999999999999999999974
No 5
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=100.00 E-value=2.9e-101 Score=859.65 Aligned_cols=538 Identities=31% Similarity=0.521 Sum_probs=481.0
Q ss_pred CccCCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCccchhccccCCCCC----hHHHHHHHHHHHHH-HHh
Q 008509 1 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGS----LSEAREVLKLARLQ-AKK 75 (563)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~~~~~~~p~~~~~~~~~~~~~----~~~~~~~~~~~~~~-~~~ 75 (563)
|++||++++|+||+++||||+|||++++++.|.++|++++.++.+|.... ....++ .......+..++.. .++
T Consensus 166 llltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~--~~~~~p~a~~~~~~~~~~~~~k~~~~~~ 243 (715)
T PRK11730 166 WIAAGKDVRAEDALKVGAVDAVVAPEKLQEAALALLKQAIAGKLDWKARR--QPKLEPLKLSKIEAMMSFTTAKGMVAQK 243 (715)
T ss_pred HHHcCCcCCHHHHHHCCCCeEecCHHHHHHHHHHHHHHHhhcCCcccccc--CcccccccccchhHHHHHHHHHHHHHHh
Confidence 57899999999999999999999999999999999999987543332211 111111 11222334444444 368
Q ss_pred hCCCChhHHHHHHHHHHhhccCchhhHHHHHHHHHHHhcCHHHHHHHHHHhhhhhhccCCCCCCCCCCCccceeEEEEcC
Q 008509 76 TAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLKPRGVRKVAVIGG 155 (563)
Q Consensus 76 ~~~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~~kr~~~k~~~~~~~~~~~~~~~kv~ViGa 155 (563)
+++++||+..++++++.+...+++++++.|.+.|..++.|+++++++++|+++|.+++.+... ...+++|++|+|||+
T Consensus 244 ~~~~~pa~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~d~~egi~aF~~~~~~~~~~~~~--~~~~~~i~~v~ViGa 321 (715)
T PRK11730 244 AGKHYPAPMTAVKTIEAAAGLGRDEALELEAKGFVKLAKTNVARALVGIFLNDQYVKGKAKKL--AKDAKPVKQAAVLGA 321 (715)
T ss_pred hccCCccHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCCCCC--CCCccccceEEEECC
Confidence 899999999999999999888999999999999999999999999999999999997765221 123567999999999
Q ss_pred CcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCcccccCCCEEEEecC
Q 008509 156 GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVI 235 (563)
Q Consensus 156 G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aDlVieav~ 235 (563)
|+||.+||..++.+|++|+++|++++.++++.+++.+.+++++++|.+++++.+..+++|++++|++++++||+||||||
T Consensus 322 G~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlViEav~ 401 (715)
T PRK11730 322 GIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDYAGFERVDVVVEAVV 401 (715)
T ss_pred chhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHHhcCCCEEEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhhhccCCCceeecccCCCCCCCCeEEEEeCCCCCHHHHHHHHHHH
Q 008509 236 ESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVG 315 (563)
Q Consensus 236 e~~~~k~~v~~~l~~~~~~~~ii~sntS~l~i~~la~~~~~~~r~ig~hf~~P~~~~~lvEiv~~~~t~~~~~~~~~~l~ 315 (563)
|++++|+++|++|++++++++||+||||++++++|++.+.+|+||+|+|||||++.|+||||++++.|++++++.+..++
T Consensus 402 E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~~g~Hff~P~~~~~lVEvv~g~~T~~~~~~~~~~~~ 481 (715)
T PRK11730 402 ENPKVKAAVLAEVEQKVREDTILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEKTSDETIATVVAYA 481 (715)
T ss_pred CcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCCccEEEEecCCcccccceEEeeCCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCceEEecCcchhhhHHHHHHHHHHHHHHHHCCCCHHHHHHHH-HhcCCCccHHHHhhhhchHHHHHHHHHHHHhCC
Q 008509 316 KIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFP 394 (563)
Q Consensus 316 ~~lGk~~v~~~d~~Gfi~nRl~~~~~~Ea~~l~~~G~~~~~ID~a~-~~~G~p~GPf~~~D~~Gld~~~~~~~~l~~~~~ 394 (563)
+.+||.||+|+|+|||++||++.++++||++++++|+++++||+++ .++|||||||+++|.+|+|++.++.+.++..++
T Consensus 482 ~~lgk~pv~v~d~pGfv~nRi~~~~~~ea~~lv~~Ga~~e~ID~a~~~~~G~~~GP~~~~D~~Gld~~~~~~~~~~~~~~ 561 (715)
T PRK11730 482 SKMGKTPIVVNDCPGFFVNRVLFPYFAGFSQLLRDGADFRQIDKVMEKQFGWPMGPAYLLDVVGIDTAHHAQAVMAEGFP 561 (715)
T ss_pred HHhCCceEEecCcCchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhCCCccCHHHHHHhhchHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999 789999999999999999999999999999888
Q ss_pred CCCC--chHHHHHHHHcCCCCcccCccccccCCCC----CCCCCCCchhHHHHHhhhccCCCCCCCcccchHHHHHHHHH
Q 008509 395 DRSF--QSPLVDLLLKSGRNGKANGKGLYTYEKGS----KPKPDPSVLPIIEECRRLSNIMPGGKPISVTEKEIVEMILF 468 (563)
Q Consensus 395 ~~~~--~~~~l~~l~~~g~~G~k~g~GFY~y~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~l~ 468 (563)
++.. +++++++|+++|++|+|+|+|||+|+++. +...|+++..++..... ....+++++|.||++.
T Consensus 562 ~~~~~~~~~~l~~~v~~G~~G~k~g~GfY~y~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~i~nRll~ 633 (715)
T PRK11730 562 DRMKKDYRDAIDVLFEAKRFGQKNGKGFYRYEEDKKGKPKKEVDPAVYELLAPVVQ--------PKREFSDEEIIARMMI 633 (715)
T ss_pred CccccchhHHHHHHHHCCCCccccCCEeEecccCCCcccccCCCHHHHHHHHHhcc--------ccCCCCHHHHHHHHHH
Confidence 7643 57889999999999999999999997431 34466666665543211 0124678899999999
Q ss_pred HHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCcHhHHHHHhCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHcCCC
Q 008509 469 PVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGIP 548 (563)
Q Consensus 469 ~~~~ea~~~l~~gv~~~~~diD~~~~~g~g~p~~~gGp~~~~d~~G~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~g~~ 548 (563)
+++|||++|++|||+.+|+|||.+|++|+|||+|+||||+++|.+|++.++++++.+. .++++|.|+++|++|+++|++
T Consensus 634 ~~~~Ea~~ll~eGvva~~~dID~a~~~g~G~p~~~gGPf~~~D~~Gld~~~~~~~~~~-~~~~~~~p~~~L~~~v~~~~~ 712 (715)
T PRK11730 634 PMINEVVRCLEEGIVASPAEADMALVYGLGFPPFRGGAFRYLDTLGVANYVALADKYA-HLGPLYQVPEGLREMAANGES 712 (715)
T ss_pred HHHHHHHHHHhcCCcCCHHHHHHHHHhCCCCCCCcCCHHHHHHHhCHHHHHHHHHHHH-HcCCCCCCCHHHHHHHHcCCC
Confidence 9999999999999855999999999999999999999999999999999999999875 588899999999999999999
Q ss_pred ccC
Q 008509 549 LSA 551 (563)
Q Consensus 549 f~~ 551 (563)
||.
T Consensus 713 f~~ 715 (715)
T PRK11730 713 YYP 715 (715)
T ss_pred CCC
Confidence 973
No 6
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=100.00 E-value=3.9e-80 Score=661.73 Aligned_cols=402 Identities=33% Similarity=0.531 Sum_probs=360.2
Q ss_pred cceeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCccccc
Q 008509 146 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 225 (563)
Q Consensus 146 ~~~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 225 (563)
++++|+|||+|+||++||.+++++|++|++||++++.++++.+++++.+++++++|.+++++.++.+++++.++++++++
T Consensus 4 ~~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~l~ 83 (503)
T TIGR02279 4 NVVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHALA 83 (503)
T ss_pred CccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHHhC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999899
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhhhccCCCceeecccCCCCCCCCeEEEEeCCCCCH
Q 008509 226 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSA 305 (563)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS~l~i~~la~~~~~~~r~ig~hf~~P~~~~~lvEiv~~~~t~~ 305 (563)
+||+|||||||++++|+.+|+++++++++++||+||||+++++++++.+.+|+|++|+|||||++.|+|+|++++..|++
T Consensus 84 ~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i~~iA~~~~~p~r~~G~HFf~Papv~~LvEvv~g~~Ts~ 163 (503)
T TIGR02279 84 DAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSITAIAAGLARPERVAGLHFFNPAPVMALVEVVSGLATAA 163 (503)
T ss_pred CCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHhcCcccceEEEeccCccccCceEEEeCCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCceEEecCcchhhhHHHHHHHHHHHHHHHHCCC-CHHHHHHHH-HhcCCCccHHHHhhhhchHHHH
Q 008509 306 QVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAA 383 (563)
Q Consensus 306 ~~~~~~~~l~~~lGk~~v~~~d~~Gfi~nRl~~~~~~Ea~~l~~~G~-~~~~ID~a~-~~~G~p~GPf~~~D~~Gld~~~ 383 (563)
++++.+.++++.+||.|++++|+|||++||++.++++||+.++++|. ++++||+++ .++|||||||+++|++|+|+++
T Consensus 164 e~~~~~~~l~~~lgk~pv~v~d~pGfi~Nrl~~~~~~EA~~l~e~g~a~~~~ID~al~~~~G~~mGPf~l~D~~Gldv~~ 243 (503)
T TIGR02279 164 EVAEQLYETALAWGKQPVHCHSTPGFIVNRVARPYYAEALRALEEQVAAPAVLDAALRDGAGFPMGPFELTDLIGHDVNF 243 (503)
T ss_pred HHHHHHHHHHHHcCCeeeEeCCCCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCcCHHHHHHHhhhHHHH
Confidence 99999999999999999999999999999999999999999999985 999999999 6899999999999999999999
Q ss_pred HHHHHHHHhC-CCCCC-chHHHHHHHHcCCCCcccCccccccCCCCCC-CC-----------------------------
Q 008509 384 ATSKEFDKAF-PDRSF-QSPLVDLLLKSGRNGKANGKGLYTYEKGSKP-KP----------------------------- 431 (563)
Q Consensus 384 ~~~~~l~~~~-~~~~~-~~~~l~~l~~~g~~G~k~g~GFY~y~~~~~~-~~----------------------------- 431 (563)
++.+.+++.+ ++++| |++++++|+++|++|+|+|+|||+|+++.+. .+
T Consensus 244 ~v~~~~~~~~~~~~~~~p~~~~~~~v~~G~lG~KtG~GfY~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (503)
T TIGR02279 244 AVTCSVFNAFWQDRRFLPSLVQQELVIAGRLGRKSGLGVYDYREEAEAVVPLEAVSDSFSPRVTVVGDIGAAAPLLARLE 323 (503)
T ss_pred HHHHHHHHHhcCCCCCCCcHHHHHHHHCCCCccccCCEeeeCCCCCCCCCCccccccccccceeecccccchhhHHHHHH
Confidence 9999988764 56555 7888999999999999999999999764321 11
Q ss_pred ----------------------------------------CCCchhHHHHHhhhccC--CC------------------C
Q 008509 432 ----------------------------------------DPSVLPIIEECRRLSNI--MP------------------G 451 (563)
Q Consensus 432 ----------------------------------------~~~~~~~~~~~~~~~~~--~~------------------~ 451 (563)
|+++..++...+....+ .+ .
T Consensus 324 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~vEv~~~~~Ts~e~~~~a~~~~~~~ 403 (503)
T TIGR02279 324 AAGIKVEKKSGRGVTQIGDALLALTDGRTAQARAIELARPNLVLFDLVLDYSTGKRIAIAAAAVNPDSATRKAIYYLQQA 403 (503)
T ss_pred hccccccccccccccccchhhhhhccccchhhhhhhcCCCCchHHHHHhhhcccCeEEEeCCCCCCHHHHHHHHHHHHHc
Confidence 01111111111000000 11 1
Q ss_pred CC-Cccc--chHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCcHhHHHHHhCHHHHHHHHHHHHHH
Q 008509 452 GK-PISV--TEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQL 528 (563)
Q Consensus 452 ~~-~~~~--~~~~i~~r~l~~~~~ea~~~l~~gv~~~~~diD~~~~~g~g~p~~~gGp~~~~d~~G~~~~~~~~~~~~~~ 528 (563)
|| +..+ ++++|+||++.+++|||++++++||+ +++|||.+|++|+|||+ |||+|+|.+|+|.++++++.+++.
T Consensus 404 Gk~pi~v~D~pGfi~nRil~~~~nEA~~ll~eGva-s~~dID~a~~~g~G~P~---GP~~~~D~~Gld~~~~~l~~l~~~ 479 (503)
T TIGR02279 404 GKKVLQIADYPGLLILRTVAMLANEAADAVLQGVA-SAQDIDTAMRLGVNYPY---GPLAWAAQLGWQRILRVLENLQHH 479 (503)
T ss_pred CCeEEEeCCcccHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhCCCCCc---CHHHHHHHhCHHHHHHHHHHHHHH
Confidence 22 1122 25999999999999999999999999 99999999999999999 999999999999999999999999
Q ss_pred hCC-CCCCCHHHHHHHHcCCCccC
Q 008509 529 YGN-FFKPSRFLEERATKGIPLSA 551 (563)
Q Consensus 529 ~~~-~~~p~~~l~~~~~~g~~f~~ 551 (563)
+++ +|.|+++|+++++.|.+|.+
T Consensus 480 ~~~~~~~p~~~L~~~v~~g~~~~~ 503 (503)
T TIGR02279 480 YGEERYRPSSLLRRRALLGSGYED 503 (503)
T ss_pred cCCCcCCcCHHHHHHHHcCCCcCC
Confidence 984 99999999999999998753
No 7
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=100.00 E-value=1.8e-78 Score=651.14 Aligned_cols=404 Identities=32% Similarity=0.558 Sum_probs=362.1
Q ss_pred CccceeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCccc
Q 008509 144 PRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE 223 (563)
Q Consensus 144 ~~~~~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 223 (563)
.+++++|+|||+|+||++||.+++++|++|++||++++.++++.+++++.+++++++|.++.++.++.++++++++++++
T Consensus 4 ~~~i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~ 83 (507)
T PRK08268 4 LPSIATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALAD 83 (507)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccCCCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhhhccCCCceeecccCCCCCCCCeEEEEeCCCC
Q 008509 224 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERT 303 (563)
Q Consensus 224 l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS~l~i~~la~~~~~~~r~ig~hf~~P~~~~~lvEiv~~~~t 303 (563)
+.+||+|||||||++++|+.+|++++..+++++||+||||++++++++..+.+|+|++|+|||||++.++|+|++++..|
T Consensus 84 ~~~aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i~~la~~~~~p~r~~G~hff~Pa~v~~LvEvv~g~~T 163 (507)
T PRK08268 84 LADCDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSITAIAAALKHPERVAGLHFFNPVPLMKLVEVVSGLAT 163 (507)
T ss_pred hCCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEeecCCcccCeeEEEeCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCceEEecCcchhhhHHHHHHHHHHHHHHHHCCC-CHHHHHHHH-HhcCCCccHHHHhhhhchHH
Q 008509 304 SAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYGV 381 (563)
Q Consensus 304 ~~~~~~~~~~l~~~lGk~~v~~~d~~Gfi~nRl~~~~~~Ea~~l~~~G~-~~~~ID~a~-~~~G~p~GPf~~~D~~Gld~ 381 (563)
++++++.+.++++.+||.|++++|+|||++||++.++++|++.++++|. ++++||+++ .++|||||||+++|.+|+|+
T Consensus 164 s~~~~~~~~~l~~~lgk~pv~v~d~pGfi~Nrll~~~~~Ea~~l~~~g~~~~~~iD~al~~~~G~~mGPf~l~D~~Gldv 243 (507)
T PRK08268 164 DPAVADALYALARAWGKTPVRAKDTPGFIVNRAARPYYTEALRVLEEGVADPATIDAILREAAGFRMGPFELMDLIGLDV 243 (507)
T ss_pred CHHHHHHHHHHHHHcCCceEEecCCCChHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCcCHHHHHHHhchHH
Confidence 9999999999999999999999999999999999999999999999985 999999999 78999999999999999999
Q ss_pred HHHHHHHHHHhC-CCCCC-chHHHHHHHHcCCCCcccCccccccCCCCC-CCCCCCc--------------------hhH
Q 008509 382 AAATSKEFDKAF-PDRSF-QSPLVDLLLKSGRNGKANGKGLYTYEKGSK-PKPDPSV--------------------LPI 438 (563)
Q Consensus 382 ~~~~~~~l~~~~-~~~~~-~~~~l~~l~~~g~~G~k~g~GFY~y~~~~~-~~~~~~~--------------------~~~ 438 (563)
.+++.+.++..+ ++.+| +++++++|++.|++|+|+|+|||+|+++++ +.++|++ ..+
T Consensus 244 ~~~v~~~~~~~~~~~~~~~~~~~~~~lv~~g~lG~ksG~GfY~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (507)
T PRK08268 244 NHAVMESVYRQFYQEPRFRPSLIQQELVAAGRLGRKSGQGFYRYADGAKQPPAEAAPPAALPPVWVSADVEGDLAALARL 323 (507)
T ss_pred HHHHHHHHHHHhcCCCcCCccHHHHHHHHCCCCccccCCeeeECCCCCCCCCCCccccccCccccccccccchhHHHHHH
Confidence 999999888764 45444 788999999999999999999999975432 2333331 111
Q ss_pred HHH----------------------------Hhhhcc-----------CCC-----------------------------
Q 008509 439 IEE----------------------------CRRLSN-----------IMP----------------------------- 450 (563)
Q Consensus 439 ~~~----------------------------~~~~~~-----------~~~----------------------------- 450 (563)
+.. ...... +.+
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~r~vg~Hf~~P~~~~~lvEvv~~~~Ts~e~~~~~~~~~~~ 403 (507)
T PRK08268 324 LERLGATIETGEGPSADGLVLLAPTGGDTTTAAAREGLDAARVVLIDLLLDYAAAKRRTLMAAPATSPAARDAAHALFQQ 403 (507)
T ss_pred HHhhccccccccccccccceEeeccCcchHHHHHHhcCCcccEEEEeccCCcccCceEEEeCCCCCCHHHHHHHHHHHHH
Confidence 100 000000 000
Q ss_pred CCC-Cc--ccchHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCcHhHHHHHhCHHHHHHHHHHHHH
Q 008509 451 GGK-PI--SVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQ 527 (563)
Q Consensus 451 ~~~-~~--~~~~~~i~~r~l~~~~~ea~~~l~~gv~~~~~diD~~~~~g~g~p~~~gGp~~~~d~~G~~~~~~~~~~~~~ 527 (563)
.+| +. .=++++|+||++.+++|||++|++|||+ +++|||.+|++|+|||+ |||+|+|.+|++.++++++.+++
T Consensus 404 ~gk~pi~v~d~~Gfi~nRll~~~~nEa~~ll~eGva-s~~dID~a~~~g~G~p~---GP~~~~D~~Gld~~~~~~~~l~~ 479 (507)
T PRK08268 404 DGKAVSVIRDSPGFVAQRTVAMIVNEAADIAQQGIA-SPADIDLAMRLGLNYPL---GPLAWGDRLGAARILRVLENLQA 479 (507)
T ss_pred cCCeeEEeCCCccHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhcCCCCc---CHHHHHHHhCHHHHHHHHHHHHH
Confidence 001 00 0067999999999999999999999998 99999999999999999 99999999999999999999999
Q ss_pred HhCC-CCCCCHHHHHHHHcCCCccC
Q 008509 528 LYGN-FFKPSRFLEERATKGIPLSA 551 (563)
Q Consensus 528 ~~~~-~~~p~~~l~~~~~~g~~f~~ 551 (563)
.+|+ +|.|+++|++|+++|++||.
T Consensus 480 ~~g~~~~~p~~ll~~~v~~G~~~~~ 504 (507)
T PRK08268 480 LYGDPRYRPSPWLRRRAALGLSLRS 504 (507)
T ss_pred HhCCCcCCcCHHHHHHHHcCCCcCC
Confidence 9995 99999999999999999976
No 8
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=100.00 E-value=4e-70 Score=540.16 Aligned_cols=280 Identities=40% Similarity=0.682 Sum_probs=271.1
Q ss_pred cceeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCccccc
Q 008509 146 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 225 (563)
Q Consensus 146 ~~~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 225 (563)
.|++|+|||+|+||++||..++..|++|+++|++++.++++++.+.+.+++++++|++++++.+..+++++.++++.+++
T Consensus 2 ~i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~~l~ 81 (307)
T COG1250 2 EIKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLAALK 81 (307)
T ss_pred CccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchhHhc
Confidence 58999999999999999999999889999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhhhccCCCceeecccCCCCCCCCeEEEEeCCCCCH
Q 008509 226 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSA 305 (563)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS~l~i~~la~~~~~~~r~ig~hf~~P~~~~~lvEiv~~~~t~~ 305 (563)
+||+|||+|+|++++|+++|+++++++++++||+||||++|++++++.+.+|+||+|+||||||+.|+||||+++..|++
T Consensus 82 ~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSsl~it~ia~~~~rper~iG~HFfNP~~~m~LVEvI~g~~T~~ 161 (307)
T COG1250 82 DADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSLSITELAEALKRPERFIGLHFFNPVPLMPLVEVIRGEKTSD 161 (307)
T ss_pred cCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCCCCHHHHHHHhCCchhEEEEeccCCCCcceeEEEecCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCceEEecCcchhhhHHHHHHHHHHHHHHHHCCC-CHHHHHHHH-HhcCCCccHHHHhhhhchHHHH
Q 008509 306 QVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAA 383 (563)
Q Consensus 306 ~~~~~~~~l~~~lGk~~v~~~d~~Gfi~nRl~~~~~~Ea~~l~~~G~-~~~~ID~a~-~~~G~p~GPf~~~D~~Gld~~~ 383 (563)
++++.+.+|.+.+||+|++++|+|||++||++.++++||++++++|+ ++++||.+| .++|||||||+++|.+|+|+++
T Consensus 162 e~~~~~~~~~~~igK~~vv~~D~pGFi~NRil~~~~~eA~~l~~eGva~~e~ID~~~~~~~G~pmGpf~l~D~~GlD~~~ 241 (307)
T COG1250 162 ETVERVVEFAKKIGKTPVVVKDVPGFIVNRLLAALLNEAIRLLEEGVATPEEIDAAMRQGLGLPMGPFELADLIGLDVML 241 (307)
T ss_pred HHHHHHHHHHHHcCCCCEeecCCCceehHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCCCccHHHHHHHHhHHHHH
Confidence 99999999999999999888999999999999999999999999995 999999999 7899999999999999999999
Q ss_pred HHHHHHHHhCCCC-CC-chHHHHHHHHcCCCCcccCccccccCC
Q 008509 384 ATSKEFDKAFPDR-SF-QSPLVDLLLKSGRNGKANGKGLYTYEK 425 (563)
Q Consensus 384 ~~~~~l~~~~~~~-~~-~~~~l~~l~~~g~~G~k~g~GFY~y~~ 425 (563)
++++.+++.++++ .+ +++++++|++.|++|+|+|+|||+|.+
T Consensus 242 ~i~~~~~~~~~~~~~~~~~~~~~~~v~~g~lG~Ksg~GfY~y~~ 285 (307)
T COG1250 242 HIMKVLNETLGDDPYYRPPPLLRKLVEAGRLGRKSGKGFYDYRG 285 (307)
T ss_pred HHHHHHHHhcCCCccccccHHHHHHHhcccccccCCCcceeccc
Confidence 9999999888743 44 789999999999999999999999974
No 9
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=100.00 E-value=7.3e-69 Score=489.23 Aligned_cols=280 Identities=33% Similarity=0.592 Sum_probs=266.3
Q ss_pred ccceeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHH-----HhhhcCeeeec
Q 008509 145 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKA-----NNALKMLKGVL 219 (563)
Q Consensus 145 ~~~~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~-----~~~~~~i~~~~ 219 (563)
..++.|+|||+|.||++||+..+.+|++|+++|.|++++.++.+.|.+.+.+..+++..+.... +..+++|+.++
T Consensus 9 ~~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~t 88 (298)
T KOG2304|consen 9 AEIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTST 88 (298)
T ss_pred ccccceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHcC
Confidence 3578999999999999999999999999999999999999999999999999998887665543 66788999999
Q ss_pred Cc-ccccCCCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhhhccCCCceeecccCCCCCCCCeEEEE
Q 008509 220 DY-SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIV 298 (563)
Q Consensus 220 ~~-~~l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS~l~i~~la~~~~~~~r~ig~hf~~P~~~~~lvEiv 298 (563)
+. +.++++|+||||+.|++++|+.+|++|+..|++++|++||||++.+++++..+.+|.||.|+|||||++.|+|||++
T Consensus 89 nv~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSSl~lt~ia~~~~~~srf~GlHFfNPvPvMKLvEVi 168 (298)
T KOG2304|consen 89 NVSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSSLSLTDIASATQRPSRFAGLHFFNPVPVMKLVEVI 168 (298)
T ss_pred CHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeecccceeHHHHHhhccChhhhceeeccCCchhHHHhhhh
Confidence 88 57899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCHHHHHHHHHHHHHhCCceEEecCcchhhhHHHHHHHHHHHHHHHHCCC-CHHHHHHHH-HhcCCCccHHHHhhh
Q 008509 299 RTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDL 376 (563)
Q Consensus 299 ~~~~t~~~~~~~~~~l~~~lGk~~v~~~d~~Gfi~nRl~~~~~~Ea~~l~~~G~-~~~~ID~a~-~~~G~p~GPf~~~D~ 376 (563)
+++.|++++++.+..|.+.+||++|-|+|.||||+||++.+|++||+++++.|. +-+|||.+| .|.|+||||||++|.
T Consensus 169 r~~~TS~eTf~~l~~f~k~~gKttVackDtpGFIVNRlLiPyl~ea~r~yerGdAskeDIDtaMklGagyPMGPfEL~Dy 248 (298)
T KOG2304|consen 169 RTDDTSDETFNALVDFGKAVGKTTVACKDTPGFIVNRLLIPYLMEAIRMYERGDASKEDIDTAMKLGAGYPMGPFELADY 248 (298)
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCceeecCCCchhhhHHHHHHHHHHHHHHHhcCCcHhhHHHHHhccCCCCCChHHHHHH
Confidence 999999999999999999999999999999999999999999999999999996 999999999 899999999999999
Q ss_pred hchHHHHHHHHHHHHhCCCC-CC-chHHHHHHHHcCCCCcccCccccccC
Q 008509 377 AGYGVAAATSKEFDKAFPDR-SF-QSPLVDLLLKSGRNGKANGKGLYTYE 424 (563)
Q Consensus 377 ~Gld~~~~~~~~l~~~~~~~-~~-~~~~l~~l~~~g~~G~k~g~GFY~y~ 424 (563)
+|||++.-+++-|++.+++. .| |+|++.+++++|++|||+|.|||+|.
T Consensus 249 vGLDt~kfvmdgwhe~~pe~~~f~psPll~klVaegklGrKtg~GfY~Yk 298 (298)
T KOG2304|consen 249 VGLDTCKFVMDGWHEGYPEDSLFAPSPLLDKLVAEGKLGRKTGEGFYKYK 298 (298)
T ss_pred hhHHHHHHHHHHHHhcCCcccccCCChHHHHHHhccccccccCccceecC
Confidence 99999999999999998654 44 99999999999999999999999983
No 10
>KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=100.00 E-value=4.1e-67 Score=513.92 Aligned_cols=378 Identities=38% Similarity=0.630 Sum_probs=349.6
Q ss_pred chHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCcccccCCCEEEEecCCC
Q 008509 158 MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIES 237 (563)
Q Consensus 158 mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aDlVieav~e~ 237 (563)
||++||..+..+|++|+++|.|...++++..++...+.+.+.+++++..+......+++.+.|+..+++||+|||+|.|+
T Consensus 1 MG~gia~~~~~~~i~~vl~~~n~~~~~~~~~~v~a~l~~~~~~~~~~~~~~~~~~~~L~~~~Dy~~~~~~dmvieav~ed 80 (380)
T KOG1683|consen 1 MGAGIAIVFILAGIRTVLVDANVALLARGILQLAAHLNSEVKRGRLSGLEREKTKSNLVETLDYTGFANADMVIEAVFED 80 (380)
T ss_pred CcchHHHHHHHcCCcEEEEeccHHHHHHhHHHHHHhhhHHHhhccccccchhhhhhhcccccccccccccceeccchhhh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhhhccCCCceeecccCCCCCCCCeEEEEeCCCCCHHHHHHHHHHHHH
Q 008509 238 VPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKI 317 (563)
Q Consensus 238 ~~~k~~v~~~l~~~~~~~~ii~sntS~l~i~~la~~~~~~~r~ig~hf~~P~~~~~lvEiv~~~~t~~~~~~~~~~l~~~ 317 (563)
+++|++++++|++++++++|++||||+++++++++.+..|++++|+|||+|++.|+|+|++.+..|+..++..+.+....
T Consensus 81 l~Lk~~l~~~le~v~~~~~i~gsntSs~~~~~isa~ld~~e~vvg~h~fspa~~m~LlEii~~~~tS~~~iA~Ain~~~~ 160 (380)
T KOG1683|consen 81 LELKHELFKSLEKVEPPKCIRGSNTSSLDINVISAGLDRPEMVVGMHFFSPAHWMQLLEIILALYTSKLTIATAINGGSP 160 (380)
T ss_pred HHHHHHHHHHHHhhcCCcceeeeccccCChHHHhhccCchhhhccccccCHHHHHHHHHHHHhcCCCchHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCceEEecCcchhhhHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHhcCCCccHHHHhhhhchHHHHHHHHHHHHhCCCC
Q 008509 318 IKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSL-GVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDR 396 (563)
Q Consensus 318 lGk~~v~~~d~~Gfi~nRl~~~~~~Ea~~l~~~-G~~~~~ID~a~~~~G~p~GPf~~~D~~Gld~~~~~~~~l~~~~~~~ 396 (563)
.||.|+++++++||.+||++.+|++++.+++.+ |++|.++|.....||||+||+.+.|..|+|+..++...+...++++
T Consensus 161 ~gk~~vvVg~c~gf~v~r~l~~y~~~~~~~l~e~g~~p~~iD~~~t~fGf~~g~~~L~d~~gfdv~eal~~gl~~~~~~r 240 (380)
T KOG1683|consen 161 AGKLPVVVGNCCGFRVNRLLPPYTIGLNELLLEIGADPWLIDSLITKFGFRVGERALADGVGFDVAEALAVGLGDEIGPR 240 (380)
T ss_pred cCCccEEeccCCceEEEecccHHHHHHHHHHHHcCCCHHHHHHHHHhcCccccHHHHhhccCccHHHHHhhccchhccch
Confidence 999999999999999999999999999998888 8999999999999999999999999999999888777765555543
Q ss_pred CCchHHHHHHHHcCCCCcccCccccccCCCCCCCCCC-CchhHHHHHhhhccCCCCCCCcccchHHHHHHHHHHHHHHHH
Q 008509 397 SFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDP-SVLPIIEECRRLSNIMPGGKPISVTEKEIVEMILFPVVNESC 475 (563)
Q Consensus 397 ~~~~~~l~~l~~~g~~G~k~g~GFY~y~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~l~~~~~ea~ 475 (563)
+.++|++.|+.|+|||+|||.|+++.++..++ +..+.+.+.. ...++...+++++++|+++++||||+
T Consensus 241 -----~~eel~~~~~~g~kT~kg~y~y~~~l~k~~~~~~~~~~~r~l~------~~~~~r~~~~ed~v~~~~~p~VnEal 309 (380)
T KOG1683|consen 241 -----IEEELLEKGRAGIKTGKGIYPYARGLTKKMKRDEMEALLRRLS------LTPNPRVADDEDFVEFLLSPFVNEAL 309 (380)
T ss_pred -----hHHHHHHHHhhhhhccCcccccccccccCCChhhHHHHHHHhc------cCCCcccCCHHHHHHHHhhHHHHHHH
Confidence 67899999999999999999999875444444 3333333321 12223457899999999999999999
Q ss_pred HHhhcCcCCChhHHHHHHHHhcCCCCCCCcHhHHHHHhCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHcCCCccC
Q 008509 476 RVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGIPLSA 551 (563)
Q Consensus 476 ~~l~~gv~~~~~diD~~~~~g~g~p~~~gGp~~~~d~~G~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~g~~f~~ 551 (563)
+|++|||..+++++|++.++|+|||+++||||+|+|.+|++.++++|+.|+. |+||.+|.+++++|+.||+
T Consensus 310 ~~l~EGi~~~~~~~Di~~v~G~gfp~~~GGp~~~~d~~G~~ki~~~l~~~~~-----f~P~~~l~~~a~~~~~~~~ 380 (380)
T KOG1683|consen 310 RCLLEGLKASPSDGDIASVFGLGFPPFRGGPMRFVDLYGADKIVSRLQKWSS-----FEPCQLLKDHAKSGKKFYN 380 (380)
T ss_pred HHHHHHHhcCccccceeeeeccCCCCcCCCceeeeeccChHHHHHHHHHHhc-----CCHHHHHHHHHhhhccccC
Confidence 9999999999999999999999999999999999999999999999999975 9999999999999999985
No 11
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=3.5e-63 Score=498.09 Aligned_cols=279 Identities=34% Similarity=0.560 Sum_probs=270.5
Q ss_pred ccceeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCcccc
Q 008509 145 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF 224 (563)
Q Consensus 145 ~~~~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l 224 (563)
.++++|+|||+|.||.+||..++.+|++|++||++++.++++.+++.+.+++++++|.++..+.++.+++++.+++++++
T Consensus 3 ~~~~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~ 82 (286)
T PRK07819 3 DAIQRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDLGDF 82 (286)
T ss_pred CCccEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCHHHh
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEecCCChHHHHHHHHHHHhhC-CCCeEEEecCCCCCHHHHhhhccCCCceeecccCCCCCCCCeEEEEeCCCC
Q 008509 225 KDVDMVIEAVIESVPLKQKIFSELEKAC-PPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERT 303 (563)
Q Consensus 225 ~~aDlVieav~e~~~~k~~v~~~l~~~~-~~~~ii~sntS~l~i~~la~~~~~~~r~ig~hf~~P~~~~~lvEiv~~~~t 303 (563)
++||+|||||||++++|+++|+++++.+ ++++||+||||++++++++..+.+|+|++|+|||||++.++++||+++..|
T Consensus 83 ~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~la~~~~~~~r~~g~hf~~P~~~~~lvElv~~~~T 162 (286)
T PRK07819 83 ADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKLAAATKRPGRVLGLHFFNPVPVLPLVELVPTLVT 162 (286)
T ss_pred CCCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCccEEEEecCCCcccCceEEEeCCCCC
Confidence 9999999999999999999999999999 899999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHH-HhCCceEEecCcchhhhHHHHHHHHHHHHHHHHCCC-CHHHHHHHH-HhcCCCccHHHHhhhhchH
Q 008509 304 SAQVILDLMTVGK-IIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYG 380 (563)
Q Consensus 304 ~~~~~~~~~~l~~-~lGk~~v~~~d~~Gfi~nRl~~~~~~Ea~~l~~~G~-~~~~ID~a~-~~~G~p~GPf~~~D~~Gld 380 (563)
++++++.+..++. .+||.|++++|.|||++||++.++++||++++++|+ +++|||+++ .++|||+|||+++|.+|+|
T Consensus 163 ~~~~~~~~~~~~~~~lgk~pv~v~d~pGfi~nRi~~~~~~Ea~~ll~eGv~~~~dID~~~~~g~G~p~Gpf~~~D~~Gld 242 (286)
T PRK07819 163 SEATVARAEEFASDVLGKQVVRAQDRSGFVVNALLVPYLLSAIRMVESGFATAEDIDKAMVLGCAHPMGPLRLSDLVGLD 242 (286)
T ss_pred CHHHHHHHHHHHHHhCCCCceEecCCCChHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCCCHHHHHHHhccH
Confidence 9999999999988 599999999999999999999999999999999997 999999999 7999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCC-chHHHHHHHHcCCCCcccCcccccc
Q 008509 381 VAAATSKEFDKAFPDRSF-QSPLVDLLLKSGRNGKANGKGLYTY 423 (563)
Q Consensus 381 ~~~~~~~~l~~~~~~~~~-~~~~l~~l~~~g~~G~k~g~GFY~y 423 (563)
++.++++.+++.+++++| |++++++|+++|++|+|+|+|||.|
T Consensus 243 ~~~~~~~~l~~~~~~~~~~p~~~l~~~v~~g~~G~k~g~GfY~y 286 (286)
T PRK07819 243 TVKAIADSMYEEFKEPLYAPPPLLLRMVEAGLLGKKSGRGFYTY 286 (286)
T ss_pred HHHHHHHHHHHHcCCCCCCCCHHHHHHHHCCCCcccCCCEeccC
Confidence 999999999999988665 8899999999999999999999998
No 12
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=4.6e-58 Score=463.37 Aligned_cols=279 Identities=29% Similarity=0.444 Sum_probs=265.3
Q ss_pred cceeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHH-HHhhhcCeeeecCcc-c
Q 008509 146 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDK-ANNALKMLKGVLDYS-E 223 (563)
Q Consensus 146 ~~~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~-~~~~~~~i~~~~~~~-~ 223 (563)
++++|+|||+|.||++||..++.+|++|++||++++.++++.+.+.+.++...+.+.++.++ .+..+.+++.++|++ +
T Consensus 2 ~~~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a 81 (287)
T PRK08293 2 DIKNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEA 81 (287)
T ss_pred CccEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHH
Confidence 46899999999999999999999999999999999999999999988888888888888776 667778999999985 6
Q ss_pred ccCCCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhhhccCCCceeecccCCCCCCCCeEEEEeCCCC
Q 008509 224 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERT 303 (563)
Q Consensus 224 l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS~l~i~~la~~~~~~~r~ig~hf~~P~~~~~lvEiv~~~~t 303 (563)
+++||+||||+||+.++|+.+++++.+.+++++||+||||+++++++++.+.+|+||+|+|||+|++.++++|+++++.|
T Consensus 82 ~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~~~~~~~~~~~~r~vg~Hf~~p~~~~~lvevv~~~~t 161 (287)
T PRK08293 82 VKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLPSQFAEATGRPEKFLALHFANEIWKNNTAEIMGHPGT 161 (287)
T ss_pred hcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccCCHHHHHhhcCCcccEEEEcCCCCCCcCCeEEEeCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCceEEe-cCcchhhhHHHHHHHHHHHHHHHHCCC-CHHHHHHHH-HhcCCCccHHHHhhhhchH
Q 008509 304 SAQVILDLMTVGKIIKKVPVVV-GNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYG 380 (563)
Q Consensus 304 ~~~~~~~~~~l~~~lGk~~v~~-~d~~Gfi~nRl~~~~~~Ea~~l~~~G~-~~~~ID~a~-~~~G~p~GPf~~~D~~Gld 380 (563)
++++++.+.++++.+||.|+++ +|.|||++||++.++++||++++++|+ +|++||+++ .++|+|+|||+++|.+|+|
T Consensus 162 ~~~~~~~~~~~~~~~Gk~pv~v~~d~pgfi~nRi~~~~~~ea~~l~~~g~a~~~~iD~a~~~~~g~~~Gp~~~~D~~Gld 241 (287)
T PRK08293 162 DPEVFDTVVAFAKAIGMVPIVLKKEQPGYILNSLLVPFLSAALALWAKGVADPETIDKTWMIATGAPMGPFGILDIVGLD 241 (287)
T ss_pred CHHHHHHHHHHHHHcCCeEEEecCCCCCHhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhccCCCcCHHHHHHHhchH
Confidence 9999999999999999999998 599999999999999999999999997 999999999 8999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCC--chHHHHHHHHcCCCCcccCccccccC
Q 008509 381 VAAATSKEFDKAFPDRSF--QSPLVDLLLKSGRNGKANGKGLYTYE 424 (563)
Q Consensus 381 ~~~~~~~~l~~~~~~~~~--~~~~l~~l~~~g~~G~k~g~GFY~y~ 424 (563)
++.++++.+++.++++++ +++++++|+++|++|+|+|+|||+|+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~g~~G~k~g~Gfy~y~ 287 (287)
T PRK08293 242 TAYNITSNWAEATDDENAKKAAALLKEYIDKGKLGVATGEGFYNYP 287 (287)
T ss_pred HHHHHHHHHHHHhCCcccccchHHHHHHHHCCCCcccCCCccccCc
Confidence 999999999999988764 78999999999999999999999994
No 13
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=4.3e-57 Score=456.73 Aligned_cols=280 Identities=32% Similarity=0.514 Sum_probs=267.7
Q ss_pred ceeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCc-cccc
Q 008509 147 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 225 (563)
Q Consensus 147 ~~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 225 (563)
+++|+|||+|.||.+||..++++|++|++||++++.++++.+++...++..++.|.++..+.+..+.+++.++++ +.++
T Consensus 1 ~~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 80 (288)
T PRK09260 1 IEKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVA 80 (288)
T ss_pred CcEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhc
Confidence 478999999999999999999999999999999999999988888888888889999998888888999988888 5789
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhhhccCCCceeecccCCCCCCCCeEEEEeCCCCCH
Q 008509 226 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSA 305 (563)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS~l~i~~la~~~~~~~r~ig~hf~~P~~~~~lvEiv~~~~t~~ 305 (563)
+||+||+|+|++.++|+.+|.++.+.+++++|+++|||+++++++++.+.+|.|++|+|||+|++.++|+|+++++.|++
T Consensus 81 ~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~l~~~~~~~~r~~g~h~~~Pv~~~~Lve~v~g~~t~~ 160 (288)
T PRK09260 81 DADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSPTEIASFTKRPERVIAMHFFNPVHKMKLVELIRGLETSD 160 (288)
T ss_pred CCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEEecCCCcccCceEEEeCCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCceEEecCcchhhhHHHHHHHHHHHHHHHHCCC-CHHHHHHHH-HhcCCCccHHHHhhhhchHHHH
Q 008509 306 QVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAA 383 (563)
Q Consensus 306 ~~~~~~~~l~~~lGk~~v~~~d~~Gfi~nRl~~~~~~Ea~~l~~~G~-~~~~ID~a~-~~~G~p~GPf~~~D~~Gld~~~ 383 (563)
++++.++++++.+|+.|++++|+|||++||++.++++||++++++|+ ++++||.++ .++|||+|||+++|.+|+|++.
T Consensus 161 ~~~~~~~~~l~~lg~~~v~v~d~~Gf~~nRl~~~~~~ea~~~~~~gv~~~~~iD~~~~~g~g~p~Gp~~~~D~~Gl~~~~ 240 (288)
T PRK09260 161 ETVQVAKEVAEQMGKETVVVNEFPGFVTSRISALVGNEAFYMLQEGVATAEDIDKAIRLGLNFPMGPLELGDLVGLDTRL 240 (288)
T ss_pred HHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCCCHHHHHHHhhHHHHH
Confidence 99999999999999999999999999999999999999999999997 999999999 7999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCchHHHHHHHHcCCCCcccCccccccCCC
Q 008509 384 ATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKG 426 (563)
Q Consensus 384 ~~~~~l~~~~~~~~~~~~~l~~l~~~g~~G~k~g~GFY~y~~~ 426 (563)
++.+.+++.+++++.|++++.+|++.|++|+|+|+|||+|+++
T Consensus 241 ~~~~~l~~~~~~~~~~~~~l~~~~~~g~~G~k~g~Gfy~y~~~ 283 (288)
T PRK09260 241 NNLKYLHETLGEKYRPAPLLEKYVKAGRLGRKTGRGVYDYTNR 283 (288)
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHCCCCccccCCEEEECCCC
Confidence 9999999988887668999999999999999999999999764
No 14
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=100.00 E-value=4.4e-57 Score=457.32 Aligned_cols=278 Identities=31% Similarity=0.549 Sum_probs=264.5
Q ss_pred cceeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHH---HHHHHHHcCCCCHHHHHhhhcCeeeecCcc
Q 008509 146 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEA---NVRGLVTRGKLTQDKANNALKMLKGVLDYS 222 (563)
Q Consensus 146 ~~~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~---~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 222 (563)
++++|+|||+|.||.+||..++.+|++|++||++++.++++.+++++ .++.++++|.++..+.+..+.++..+++++
T Consensus 2 ~i~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 81 (291)
T PRK06035 2 DIKVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSYE 81 (291)
T ss_pred CCcEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCHH
Confidence 47899999999999999999999999999999999999988877766 366778889888888888888998888888
Q ss_pred cccCCCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhhhccCCCceeecccCCCCCCCCeEEEEeCCC
Q 008509 223 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTER 302 (563)
Q Consensus 223 ~l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS~l~i~~la~~~~~~~r~ig~hf~~P~~~~~lvEiv~~~~ 302 (563)
++++||+||||+||+.++|+++++++++.+++++||+||||+++++++++.+.+|+|++|+|||+|++.++++|+++++.
T Consensus 82 ~~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~~~~~la~~~~~~~r~ig~hf~~P~~~~~~vEv~~g~~ 161 (291)
T PRK06035 82 SLSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGIMIAEIATALERKDRFIGMHWFNPAPVMKLIEVVRAAL 161 (291)
T ss_pred HhCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCCCCHHHHHhhcCCcccEEEEecCCCcccCccEEEeCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCceEEecCcchhhhHHHHHHHHHHHHHHHHCCC-CHHHHHHHH-HhcCCCccHHHHhhhhchH
Q 008509 303 TSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYG 380 (563)
Q Consensus 303 t~~~~~~~~~~l~~~lGk~~v~~~d~~Gfi~nRl~~~~~~Ea~~l~~~G~-~~~~ID~a~-~~~G~p~GPf~~~D~~Gld 380 (563)
|++++++.+.++++.+|+.|++++|.|||++||++.++++||++++++|+ +++|||+++ .++|+|+|||+++|.+|+|
T Consensus 162 T~~e~~~~~~~~~~~lgk~~v~v~d~pgfv~nRl~~~~~~ea~~~~~~g~a~~~~iD~~~~~~~g~~~Gp~~~~D~~Gl~ 241 (291)
T PRK06035 162 TSEETFNTTVELSKKIGKIPIEVADVPGFFTTRFIEGWLLEAIRSFEIGIATIKDIDEMCKLAFGFPMGPFELMDIIGID 241 (291)
T ss_pred CCHHHHHHHHHHHHHcCCeEEEeCCCCCeeHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhcCCCccCHHHHHHHhhHH
Confidence 99999999999999999999999999999999999999999999999997 999999999 8999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCC-chHHHHHHHHcCCCCccc-----Ccccccc
Q 008509 381 VAAATSKEFDKAFPDRSF-QSPLVDLLLKSGRNGKAN-----GKGLYTY 423 (563)
Q Consensus 381 ~~~~~~~~l~~~~~~~~~-~~~~l~~l~~~g~~G~k~-----g~GFY~y 423 (563)
++.++++.+++.+++++| |++++++|+++|++|+|+ |+|||+|
T Consensus 242 ~~~~~~~~l~~~~~~~~~~~~~~l~~~v~~g~~G~k~~~~~~g~Gfy~y 290 (291)
T PRK06035 242 TVYHIAEYLYEETGDPQFIPPNSLKQMVLNGYVGDKKVKYGSKGGWFDY 290 (291)
T ss_pred HHHHHHHHHHHHcCCCcCCccHHHHHHHHCCCCcCCCCCCCCCceeeec
Confidence 999999999999988665 889999999999999999 9999998
No 15
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=5.7e-57 Score=454.66 Aligned_cols=278 Identities=36% Similarity=0.617 Sum_probs=267.9
Q ss_pred cceeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCccccc
Q 008509 146 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 225 (563)
Q Consensus 146 ~~~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 225 (563)
.|+||+|||+|.||.+||..++.+|++|+++|++++.++++.+++++.++.+.+.|.++..+....+.+++.+++++.++
T Consensus 2 ~~~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~ 81 (282)
T PRK05808 2 GIQKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDDLK 81 (282)
T ss_pred CccEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHhc
Confidence 36789999999999999999999999999999999999999999999999999999999888888888999899998899
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhhhccCCCceeecccCCCCCCCCeEEEEeCCCCCH
Q 008509 226 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSA 305 (563)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS~l~i~~la~~~~~~~r~ig~hf~~P~~~~~lvEiv~~~~t~~ 305 (563)
+||+||||+||++++|+++|++++++++++++|+||||+++++++++.+.+|+|++|+|||+|++.++++|++++..|++
T Consensus 82 ~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~~la~~~~~~~r~ig~h~~~P~~~~~~vev~~g~~t~~ 161 (282)
T PRK05808 82 DADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSLSITELAAATKRPDKVIGMHFFNPVPVMKLVEIIRGLATSD 161 (282)
T ss_pred cCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhhCCCcceEEeeccCCcccCccEEEeCCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCceEEecCcchhhhHHHHHHHHHHHHHHHHCCC-CHHHHHHHH-HhcCCCccHHHHhhhhchHHHH
Q 008509 306 QVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAA 383 (563)
Q Consensus 306 ~~~~~~~~l~~~lGk~~v~~~d~~Gfi~nRl~~~~~~Ea~~l~~~G~-~~~~ID~a~-~~~G~p~GPf~~~D~~Gld~~~ 383 (563)
++++.+..+++.+|+.|++++|+|||++||++.+++|||++++++|+ +|+|||.++ .++|||+|||+++|.+|+|.+.
T Consensus 162 e~~~~~~~l~~~lGk~pv~~~d~~g~i~~Ri~~~~~~ea~~~~~~gv~~~~diD~~~~~g~g~p~Gp~~~~D~~Gl~~~~ 241 (282)
T PRK05808 162 ATHEAVEALAKKIGKTPVEVKNAPGFVVNRILIPMINEAIFVLAEGVATAEDIDEGMKLGCNHPIGPLALADLIGLDTCL 241 (282)
T ss_pred HHHHHHHHHHHHcCCeeEEecCccChHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCCCHHHHHHHhhhHHHH
Confidence 99999999999999999999999999999999999999999999997 999999999 7999999999999999999999
Q ss_pred HHHHHHHHhCCCCCC-chHHHHHHHHcCCCCcccCcccccc
Q 008509 384 ATSKEFDKAFPDRSF-QSPLVDLLLKSGRNGKANGKGLYTY 423 (563)
Q Consensus 384 ~~~~~l~~~~~~~~~-~~~~l~~l~~~g~~G~k~g~GFY~y 423 (563)
++++.+++.+++++| |++++++|+++|++|+|+|+|||+|
T Consensus 242 ~~~~~l~~~~~~~~~~~~~~l~~~~~~g~~G~k~g~Gfy~y 282 (282)
T PRK05808 242 AIMEVLYEGFGDSKYRPCPLLRKMVAAGWLGRKTGRGFYDY 282 (282)
T ss_pred HHHHHHHHHcCCCcCCCCHHHHHHHHCCCCccccCCcccCC
Confidence 999999999987655 8899999999999999999999998
No 16
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=100.00 E-value=2.1e-56 Score=453.44 Aligned_cols=282 Identities=32% Similarity=0.577 Sum_probs=270.6
Q ss_pred cceeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCccccc
Q 008509 146 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 225 (563)
Q Consensus 146 ~~~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 225 (563)
++++|+|||+|.||.+||..++.+|++|++||++++.++++.+++++.++++++.|.++.++.++.+.++..++++++++
T Consensus 3 ~~~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 82 (295)
T PLN02545 3 EIKKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEELR 82 (295)
T ss_pred CcCEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHHhC
Confidence 47899999999999999999999999999999999999999999999999999999999998888888888888888999
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhhhccCCCceeecccCCCCCCCCeEEEEeCCCCCH
Q 008509 226 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSA 305 (563)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS~l~i~~la~~~~~~~r~ig~hf~~P~~~~~lvEiv~~~~t~~ 305 (563)
+||+|||||+|++++|+.+|+++.+.+++++||+||||+++++++++.+.++.+++|+||++|+..++++|+++++.|++
T Consensus 83 ~aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~~~l~~~~~~~~r~~g~h~~~pp~~~~lveiv~g~~t~~ 162 (295)
T PLN02545 83 DADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISITRLASATQRPQQVIGMHFMNPPPIMKLVEIIRGADTSD 162 (295)
T ss_pred CCCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCcceEEEeccCCcccCceEEEeCCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCceEEecCcchhhhHHHHHHHHHHHHHHHHCCC-CHHHHHHHH-HhcCCCccHHHHhhhhchHHHH
Q 008509 306 QVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAA 383 (563)
Q Consensus 306 ~~~~~~~~l~~~lGk~~v~~~d~~Gfi~nRl~~~~~~Ea~~l~~~G~-~~~~ID~a~-~~~G~p~GPf~~~D~~Gld~~~ 383 (563)
++++.+.++++.+|+.+++++|.|||++||++.++++||++++++|+ ++++||.++ .++|||+|||+++|.+|+|++.
T Consensus 163 e~~~~~~~ll~~lG~~~~~~~d~~g~i~nri~~~~~~ea~~~~~~gv~~~~~iD~~~~~g~g~~~Gp~~~~D~~Gl~~~~ 242 (295)
T PLN02545 163 EVFDATKALAERFGKTVVCSQDYPGFIVNRILMPMINEAFYALYTGVASKEDIDTGMKLGTNHPMGPLHLADFIGLDTCL 242 (295)
T ss_pred HHHHHHHHHHHHcCCeeEEecCcccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhccCCCCCHHHHHHHhchHHHH
Confidence 99999999999999999999999999999999999999999999997 999999999 7999999999999999999999
Q ss_pred HHHHHHHHhCCCCCC-chHHHHHHHHcCCCCcccCccccccCCCC
Q 008509 384 ATSKEFDKAFPDRSF-QSPLVDLLLKSGRNGKANGKGLYTYEKGS 427 (563)
Q Consensus 384 ~~~~~l~~~~~~~~~-~~~~l~~l~~~g~~G~k~g~GFY~y~~~~ 427 (563)
++++.+++.+++++| |++++.+|+++|++|+|+|+|||+|++++
T Consensus 243 ~~~~~l~~~~~~~~~~~~~~l~~~~~~g~~G~k~g~Gfy~y~~~~ 287 (295)
T PLN02545 243 SIMKVLHEGLGDSKYRPCPLLVQYVDAGRLGRKSGRGVYHYDGKK 287 (295)
T ss_pred HHHHHHHHHcCCCcCCCCHHHHHHHHCCCCcccCCCeeeECCCCC
Confidence 999999999987665 88999999999999999999999997654
No 17
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=3.8e-56 Score=450.86 Aligned_cols=281 Identities=32% Similarity=0.524 Sum_probs=268.4
Q ss_pred cceeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCccccc
Q 008509 146 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 225 (563)
Q Consensus 146 ~~~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 225 (563)
++++|+|||+|.||.+||..++.+|++|++||++++.++++.+++.+.+++.++.|.++..+.+..+.+++.++++++++
T Consensus 3 ~~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 82 (292)
T PRK07530 3 AIKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLEDLA 82 (292)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHHHhc
Confidence 47899999999999999999999999999999999999999998999999889999999888888888999999998899
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhhhccCCCceeecccCCCCCCCCeEEEEeCCCCCH
Q 008509 226 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSA 305 (563)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS~l~i~~la~~~~~~~r~ig~hf~~P~~~~~lvEiv~~~~t~~ 305 (563)
+||+||+||||+.++|+.+|+++.+.+++++||+||||+++++++++.+.+|+|++|+|||+|++.++++|++++..|++
T Consensus 83 ~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~s~la~~~~~~~r~~g~h~~~p~~~~~~vei~~g~~t~~ 162 (292)
T PRK07530 83 DCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISITRLASATDRPERFIGIHFMNPVPVMKLVELIRGIATDE 162 (292)
T ss_pred CCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEeeccCCcccCceEEEeCCCCCCH
Confidence 99999999999999999999999999999999999999999999999998999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCceEEecCcchhhhHHHHHHHHHHHHHHHHCCC-CHHHHHHHH-HhcCCCccHHHHhhhhchHHHH
Q 008509 306 QVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAA 383 (563)
Q Consensus 306 ~~~~~~~~l~~~lGk~~v~~~d~~Gfi~nRl~~~~~~Ea~~l~~~G~-~~~~ID~a~-~~~G~p~GPf~~~D~~Gld~~~ 383 (563)
++++.+.++++.+|+.+++++|.|||++||++.++++|++.++++|+ ++++||.++ .++|||+|||+++|.+|+|++.
T Consensus 163 ~~~~~~~~~~~~~gk~~v~~~d~pg~i~nRl~~~~~~ea~~~~~~g~~~~~~iD~~~~~g~g~~~GP~~~~D~~Gl~~~~ 242 (292)
T PRK07530 163 ATFEAAKEFVTKLGKTITVAEDFPAFIVNRILLPMINEAIYTLYEGVGSVEAIDTAMKLGANHPMGPLELADFIGLDTCL 242 (292)
T ss_pred HHHHHHHHHHHHcCCeEEEecCcCChHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCCCHHHHHHHhhhHHHH
Confidence 99999999999999999999999999999999999999999999998 999999999 7999999999999999999999
Q ss_pred HHHHHHHHhCCCCCC-chHHHHHHHHcCCCCcccCccccccCCC
Q 008509 384 ATSKEFDKAFPDRSF-QSPLVDLLLKSGRNGKANGKGLYTYEKG 426 (563)
Q Consensus 384 ~~~~~l~~~~~~~~~-~~~~l~~l~~~g~~G~k~g~GFY~y~~~ 426 (563)
++++.+++.+++++| |++++.+|++.|++|+|+|+|||+|+++
T Consensus 243 ~~~~~~~~~~~~~~~~p~~~l~~~v~~g~~G~k~g~Gfy~y~~~ 286 (292)
T PRK07530 243 SIMQVLHDGLADSKYRPCPLLVKYVEAGWLGRKTGRGFYDYRGE 286 (292)
T ss_pred HHHHHHHHHcCCCcCCCCHHHHHHHHCCCCccccCCEeeeCCCC
Confidence 999999999887655 8899999999999999999999999643
No 18
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=4.6e-55 Score=443.42 Aligned_cols=268 Identities=28% Similarity=0.412 Sum_probs=255.2
Q ss_pred chHHHHHHHHhCCCeEEEEeCCHH-------HHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecC--c-ccccCC
Q 008509 158 MGSGIATAHILNNIYVVLKEVNSE-------YLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD--Y-SEFKDV 227 (563)
Q Consensus 158 mG~~iA~~la~~G~~V~l~d~~~~-------~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~--~-~~l~~a 227 (563)
||++||..++.+|++|+++|++++ .++++.+++.+.+++++++|.++.++.++.+++++++++ . +++++|
T Consensus 1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~a 80 (314)
T PRK08269 1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALADA 80 (314)
T ss_pred CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhccC
Confidence 899999999999999999999995 477789999999999999999999999999999998865 3 578999
Q ss_pred CEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhhhccCCCceeecccCCCCCCCCeEEEEeCCCCCHHH
Q 008509 228 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQV 307 (563)
Q Consensus 228 DlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS~l~i~~la~~~~~~~r~ig~hf~~P~~~~~lvEiv~~~~t~~~~ 307 (563)
|+|||||||++++|+.+|+++++.+++++||+||||++++++|++.+.+|+|++|+||||||+.|++|||++++.|++++
T Consensus 81 D~ViEav~E~~~~K~~~f~~l~~~~~~~~ilaSntS~~~~~~la~~~~~p~r~~g~Hf~~Pp~~~~lvEVv~g~~t~~e~ 160 (314)
T PRK08269 81 DLVFEAVPEVLDAKREALRWLGRHVDADAIIASTTSTFLVTDLQRHVAHPERFLNAHWLNPAYLMPLVEVSPSDATDPAV 160 (314)
T ss_pred CEEEECCcCCHHHHHHHHHHHHhhCCCCcEEEEccccCCHHHHHhhcCCcccEEEEecCCccccCceEEEeCCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCceEEecCcchhhhHHHHHHHHHHHHHHHHCCC-CHHHHHHHH-HhcCCC---ccHHHHhhhhchHHH
Q 008509 308 ILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLP---IGPFQLLDLAGYGVA 382 (563)
Q Consensus 308 ~~~~~~l~~~lGk~~v~~~d~~Gfi~nRl~~~~~~Ea~~l~~~G~-~~~~ID~a~-~~~G~p---~GPf~~~D~~Gld~~ 382 (563)
++.+.++++.+||.+++++|.|||++||++.++++|++.++++|+ ++++||.++ .++||| +|||+++|.+|+|++
T Consensus 161 ~~~~~~ll~~lGk~~v~v~d~~Gfi~nri~~~~l~EAl~l~e~g~~~~e~iD~a~~~g~G~~~~~~Gpf~~~D~~Gld~~ 240 (314)
T PRK08269 161 VDRLAALLERIGKVPVVCGPSPGYIVPRIQALAMNEAARMVEEGVASAEDIDKAIRTGFGLRFAVLGLLEFIDWGGCDIL 240 (314)
T ss_pred HHHHHHHHHHcCCcEEEecCCCCcchHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCccCcCHHHHHHhhhHHHH
Confidence 999999999999999999999999999999999999999999985 999999999 799999 699999999999999
Q ss_pred HHHHHHHHHhCCCCC-CchHHHHHHHHcCCCCcccCccccccCC
Q 008509 383 AATSKEFDKAFPDRS-FQSPLVDLLLKSGRNGKANGKGLYTYEK 425 (563)
Q Consensus 383 ~~~~~~l~~~~~~~~-~~~~~l~~l~~~g~~G~k~g~GFY~y~~ 425 (563)
.++++.+++.++++. .|++++++|+++|++|+|+|+|||+|++
T Consensus 241 ~~~~~~l~~~~~~~~~~p~~~l~~~v~~g~~G~ksG~GfY~y~~ 284 (314)
T PRK08269 241 YYASRYLAGEIGPDRFAPPAIVVRNMEEGRDGLRTGAGFYDYAG 284 (314)
T ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHCCCCcccCCCcceeCCC
Confidence 999999999888844 4889999999999999999999999964
No 19
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=2e-55 Score=443.91 Aligned_cols=277 Identities=24% Similarity=0.326 Sum_probs=245.9
Q ss_pred ccceeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCc-cc
Q 008509 145 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 223 (563)
Q Consensus 145 ~~~~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 223 (563)
.++++|+|||+|+||++||..++.+|++|++||++++.++++.+++.+.++.+.+.| ++. ....++++.++++ ++
T Consensus 5 ~~i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~-~~~---~~~~~~i~~~~~l~~a 80 (321)
T PRK07066 5 TDIKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQG-LAP---GASPARLRFVATIEAC 80 (321)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcC-CCh---hhHHhhceecCCHHHH
Confidence 357899999999999999999999999999999999999999999999998888877 433 2344688888888 57
Q ss_pred ccCCCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhhhccCCCceeecccCCCCCCCCeEEEEeCCCC
Q 008509 224 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERT 303 (563)
Q Consensus 224 l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS~l~i~~la~~~~~~~r~ig~hf~~P~~~~~lvEiv~~~~t 303 (563)
+++||+|||||||++++|+++|+++++++++++||+||||+++++++++.+.+|+||+|+||||||+.+|||||++++.|
T Consensus 81 v~~aDlViEavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS~l~~s~la~~~~~p~R~~g~HffnP~~~~pLVEVv~g~~T 160 (321)
T PRK07066 81 VADADFIQESAPEREALKLELHERISRAAKPDAIIASSTSGLLPTDFYARATHPERCVVGHPFNPVYLLPLVEVLGGERT 160 (321)
T ss_pred hcCCCEEEECCcCCHHHHHHHHHHHHHhCCCCeEEEECCCccCHHHHHHhcCCcccEEEEecCCccccCceEEEeCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCceEEe-cCcchhhhHHHHHHHHHHHHHHHHCCC-CHHHHHHHH-HhcCCC---ccHHHHhhhh
Q 008509 304 SAQVILDLMTVGKIIKKVPVVV-GNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLP---IGPFQLLDLA 377 (563)
Q Consensus 304 ~~~~~~~~~~l~~~lGk~~v~~-~d~~Gfi~nRl~~~~~~Ea~~l~~~G~-~~~~ID~a~-~~~G~p---~GPf~~~D~~ 377 (563)
++++++.+.+|++.+||.||++ +|.|||++||++.++++||++++++|+ +++|||++| .++|++ +|||+++|++
T Consensus 161 ~~e~~~~~~~f~~~lGk~pV~v~kd~pGFi~NRl~~a~~~EA~~lv~eGvas~edID~a~~~g~g~r~~~~Gpf~~~Dl~ 240 (321)
T PRK07066 161 APEAVDAAMGIYRALGMRPLHVRKEVPGFIADRLLEALWREALHLVNEGVATTGEIDDAIRFGAGIRWSFMGTFLTYTLA 240 (321)
T ss_pred CHHHHHHHHHHHHHcCCEeEecCCCCccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCccCcCHHHHhhhc
Confidence 9999999999999999999999 799999999999999999999999997 999999999 699987 8999999999
Q ss_pred chHH-HHHHHHHHHHhCCCC---CCchHHHHHHHH------cCCCCcccCccccccCC
Q 008509 378 GYGV-AAATSKEFDKAFPDR---SFQSPLVDLLLK------SGRNGKANGKGLYTYEK 425 (563)
Q Consensus 378 Gld~-~~~~~~~l~~~~~~~---~~~~~~l~~l~~------~g~~G~k~g~GFY~y~~ 425 (563)
|+|. +.+.++.+...+.+. .-++++..+|++ ++.+|.++..++|.|.+
T Consensus 241 Gld~g~~~~~~~~g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rd 298 (321)
T PRK07066 241 GGDAGMRHFMQQFGPALELPWTKLVAPELTDALIDRVVEGTAEQQGPRSIKALERYRD 298 (321)
T ss_pred ChHHHHHHHHHHhhhhhhHHHHhcCCCcccHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 9998 444666655544221 113445555555 57888888999998854
No 20
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=1.6e-46 Score=384.18 Aligned_cols=276 Identities=32% Similarity=0.531 Sum_probs=247.4
Q ss_pred cceeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCcc-cc
Q 008509 146 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS-EF 224 (563)
Q Consensus 146 ~~~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~l 224 (563)
++++|+|||+|.||++||..|+++|++|++||++++.++.+.+.+.+........+. ....+.+++.+++++ .+
T Consensus 3 ~~~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~~~~~~~~~~ 77 (311)
T PRK06130 3 PIQNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGI-----ASAGMGRIRMEAGLAAAV 77 (311)
T ss_pred CccEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhccc-----HHHHhhceEEeCCHHHHh
Confidence 478999999999999999999999999999999999988877665544432222211 012334567777775 58
Q ss_pred cCCCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhhhccCCCceeecccCCCCCCCCeEEEEeCCCCC
Q 008509 225 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTS 304 (563)
Q Consensus 225 ~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS~l~i~~la~~~~~~~r~ig~hf~~P~~~~~lvEiv~~~~t~ 304 (563)
++||+||+|||++.++|+.+++++...++++++|+|+||+++++++++.+.++.+++|+||++|++.++++|+++++.|+
T Consensus 78 ~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~~~~~l~~~~~~~~~~ig~h~~~p~~~~~l~~i~~g~~t~ 157 (311)
T PRK06130 78 SGADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLPITAIAQAVTRPERFVGTHFFTPADVIPLVEVVRGDKTS 157 (311)
T ss_pred ccCCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEccCCCCccCceEEEeCCCCCC
Confidence 99999999999999999999999999999999999999999999999998888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCceEEec-CcchhhhHHHHHHHHHHHHHHHHCCC-CHHHHHHHH-HhcCCC---ccHHHHhhhhc
Q 008509 305 AQVILDLMTVGKIIKKVPVVVG-NCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLP---IGPFQLLDLAG 378 (563)
Q Consensus 305 ~~~~~~~~~l~~~lGk~~v~~~-d~~Gfi~nRl~~~~~~Ea~~l~~~G~-~~~~ID~a~-~~~G~p---~GPf~~~D~~G 378 (563)
+++++.+.++++.+|+.++++. |.|||++||++.++++||+.++++|. ++++||.++ .++||| +|||+++|.+|
T Consensus 158 ~~~~~~v~~l~~~~G~~~v~~~~d~~G~i~nr~~~~~~~Ea~~l~~~g~~~~~~id~~~~~~~g~~~~~~Gp~~~~D~~G 237 (311)
T PRK06130 158 PQTVATTMALLRSIGKRPVLVKKDIPGFIANRIQHALAREAISLLEKGVASAEDIDEVVKWSLGIRLALTGPLEQRDMNG 237 (311)
T ss_pred HHHHHHHHHHHHHcCCEEEEEcCCCCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCccCCCHHHHhhhhc
Confidence 9999999999999999999994 88999999999999999999999975 999999999 799998 69999999999
Q ss_pred hHHHHHHHHHHHHhCCCCCCchHHHHHHHHcCCCCcccCccccccCCC
Q 008509 379 YGVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKG 426 (563)
Q Consensus 379 ld~~~~~~~~l~~~~~~~~~~~~~l~~l~~~g~~G~k~g~GFY~y~~~ 426 (563)
+|++.++++.+++.+++++.+++++++|++.|++|+|+|+|||+|+++
T Consensus 238 l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~g~~G~~~g~gfy~y~~~ 285 (311)
T PRK06130 238 LDVHLAVASYLYQDLENRTTPSPLLEEKVEAGELGAKSGQGFYAWPPE 285 (311)
T ss_pred cchHHHHHHHHHHhcCCcCCCCHHHHHHHHcCCccccCCCcCccCCCC
Confidence 999999999999998877778999999999999999999999999753
No 21
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=100.00 E-value=9.6e-41 Score=340.36 Aligned_cols=262 Identities=26% Similarity=0.353 Sum_probs=244.6
Q ss_pred ceeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCcc-ccc
Q 008509 147 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS-EFK 225 (563)
Q Consensus 147 ~~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~l~ 225 (563)
|++|+|||+|.||++||..|+++|++|++||++++.++.+..+++..++.+.+.|.++..+....+.++..+++++ +++
T Consensus 2 ~~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~ 81 (308)
T PRK06129 2 MGSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVA 81 (308)
T ss_pred CcEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhC
Confidence 5789999999999999999999999999999999999999999999999999999998888888888999899985 679
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhhhccCCCceeecccCCCCCCCCeEEEEeCCCCCH
Q 008509 226 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSA 305 (563)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS~l~i~~la~~~~~~~r~ig~hf~~P~~~~~lvEiv~~~~t~~ 305 (563)
+||+||+|+|++.++|+.+++++.+.++++++++||||+++++++++.+.++.++++.|||+|++.++++|++++..|++
T Consensus 82 ~ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~ssts~~~~~~la~~~~~~~~~~~~hp~~p~~~~~lveiv~~~~t~~ 161 (308)
T PRK06129 82 DADYVQESAPENLELKRALFAELDALAPPHAILASSTSALLASAFTEHLAGRERCLVAHPINPPYLIPVVEVVPAPWTAP 161 (308)
T ss_pred CCCEEEECCcCCHHHHHHHHHHHHHhCCCcceEEEeCCCCCHHHHHHhcCCcccEEEEecCCCcccCceEEEeCCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCceEEe-cCcchhhhHHHHHHHHHHHHHHHHCCC-CHHHHHHHH-HhcCCC---ccHHHHhhhh--
Q 008509 306 QVILDLMTVGKIIKKVPVVV-GNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLP---IGPFQLLDLA-- 377 (563)
Q Consensus 306 ~~~~~~~~l~~~lGk~~v~~-~d~~Gfi~nRl~~~~~~Ea~~l~~~G~-~~~~ID~a~-~~~G~p---~GPf~~~D~~-- 377 (563)
++++.+.++++.+|+.++++ ++.+||++||++.++++||+.++++|. ++++||+++ .++|++ +|||++.|..
T Consensus 162 ~~~~~~~~~~~~lG~~~v~v~~~~~G~i~nrl~~a~~~EA~~l~~~g~~~~~~id~~~~~~~g~~~~~~gp~~~~d~~~~ 241 (308)
T PRK06129 162 ATLARAEALYRAAGQSPVRLRREIDGFVLNRLQGALLREAFRLVADGVASVDDIDAVIRDGLGLRWSFMGPFETIDLNAP 241 (308)
T ss_pred HHHHHHHHHHHHcCCEEEEecCCCccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhccCCCccCcCHHHHHhcccc
Confidence 99999999999999999999 589999999999999999999999975 999999999 789988 8999999987
Q ss_pred -chHHHHHHHHHHHHhCCCCCC-chHHHHHHHH
Q 008509 378 -GYGVAAATSKEFDKAFPDRSF-QSPLVDLLLK 408 (563)
Q Consensus 378 -Gld~~~~~~~~l~~~~~~~~~-~~~~l~~l~~ 408 (563)
|++........++..+++..+ +++++++|++
T Consensus 242 ~g~~~~~~k~~~l~~~~~~~~~~~~~~~~~~~~ 274 (308)
T PRK06129 242 GGVADYAQRYGPMYRRMAAERGQPVPWDGELVA 274 (308)
T ss_pred ccHHHHHHHHHHHHHhhccccCCCchhhHHHHH
Confidence 899999988888888877655 7788888876
No 22
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=100.00 E-value=7.2e-41 Score=313.19 Aligned_cols=180 Identities=40% Similarity=0.620 Sum_probs=162.0
Q ss_pred eEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCcccccCCC
Q 008509 149 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVD 228 (563)
Q Consensus 149 kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aD 228 (563)
||+|||+|+||.+||..++.+|++|++||++++.++.+.+++++.++.++++|.+++++.+..++++++++|++++.+||
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~~ad 80 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAVDAD 80 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGCTES
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHhhhh
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999998888999
Q ss_pred EEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhhhccCCCceeecccCCCCCCCCeEEEEeCCCCCHHHH
Q 008509 229 MVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVI 308 (563)
Q Consensus 229 lVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS~l~i~~la~~~~~~~r~ig~hf~~P~~~~~lvEiv~~~~t~~~~~ 308 (563)
+||||+||++++|+++|++|++++++++||+||||++++++|++.+.+|+|++|+|||||++.+|+|||++++.|+++++
T Consensus 81 lViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~la~~~~~p~R~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~ 160 (180)
T PF02737_consen 81 LVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLSISELAAALSRPERFIGMHFFNPPHLMPLVEVVPGPKTSPETV 160 (180)
T ss_dssp EEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHHHHTTSSTGGGEEEEEE-SSTTT--EEEEEE-TTS-HHHH
T ss_pred eehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHHHHhccCcCceEEEEecccccccCceEEEeCCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCceEEecCc
Q 008509 309 LDLMTVGKIIKKVPVVVGNC 328 (563)
Q Consensus 309 ~~~~~l~~~lGk~~v~~~d~ 328 (563)
+.+..+++.+||.|++++|+
T Consensus 161 ~~~~~~~~~~gk~pv~v~D~ 180 (180)
T PF02737_consen 161 DRVRALLRSLGKTPVVVKDT 180 (180)
T ss_dssp HHHHHHHHHTT-EEEEEES-
T ss_pred HHHHHHHHHCCCEEEEecCC
Confidence 99999999999999999874
No 23
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=100.00 E-value=3.3e-37 Score=332.59 Aligned_cols=244 Identities=25% Similarity=0.320 Sum_probs=207.2
Q ss_pred cceeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCc-ccc
Q 008509 146 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 224 (563)
Q Consensus 146 ~~~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 224 (563)
++++|+|||+|+||++||..|+++|++|++||+++++++.....+..... .. +.+.... .....+++.++++ +++
T Consensus 3 ~i~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~-~~--~~l~~~~-~~~~g~i~~~~~~~ea~ 78 (495)
T PRK07531 3 MIMKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAER-AY--AMLTDAP-LPPEGRLTFCASLAEAV 78 (495)
T ss_pred CcCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHH-HH--hhhccch-hhhhhceEeeCCHHHHh
Confidence 36799999999999999999999999999999999988764332221111 11 1111111 1123457778888 478
Q ss_pred cCCCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhhhccCCCceeecccCCCCCCCCeEEEEeCCCCC
Q 008509 225 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTS 304 (563)
Q Consensus 225 ~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS~l~i~~la~~~~~~~r~ig~hf~~P~~~~~lvEiv~~~~t~ 304 (563)
++||+||||+||+.++|+.+|+++.+.+++++||+||||+++++++++.+.++.++++.|||||++.++|+|+++++.|+
T Consensus 79 ~~aD~Vieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi~~s~l~~~~~~~~r~~~~hP~nP~~~~~Lvevv~g~~t~ 158 (495)
T PRK07531 79 AGADWIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLPSDLQEGMTHPERLFVAHPYNPVYLLPLVELVGGGKTS 158 (495)
T ss_pred cCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcceEEEEecCCCcccCceEEEcCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCceEEe-cCcchhhhHHHHHHHHHHHHHHHHCC-CCHHHHHHHH-HhcCCC---ccHHHHhhhhc
Q 008509 305 AQVILDLMTVGKIIKKVPVVV-GNCTGFAVNRAFFPYSQSARLLVSLG-VDVFRIDSAI-RSFGLP---IGPFQLLDLAG 378 (563)
Q Consensus 305 ~~~~~~~~~l~~~lGk~~v~~-~d~~Gfi~nRl~~~~~~Ea~~l~~~G-~~~~~ID~a~-~~~G~p---~GPf~~~D~~G 378 (563)
+++++.+.++++.+|+.++++ ++.+||++||++.++++||+.++++| +++++||+++ .++|++ +|||++.|+.|
T Consensus 159 ~e~~~~~~~~~~~lG~~~v~~~k~~~gfi~nrl~~a~~~EA~~L~~~g~~s~~~id~~~~~g~g~~~~~~Gpf~~~dl~g 238 (495)
T PRK07531 159 PETIRRAKEILREIGMKPVHIAKEIDAFVGDRLLEALWREALWLVKDGIATTEEIDDVIRYSFGLRWAQMGLFETYRIAG 238 (495)
T ss_pred HHHHHHHHHHHHHcCCEEEeecCCCcchhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCccccchHHHHHhcC
Confidence 999999999999999999999 59999999999999999999999997 5999999999 787764 89999999998
Q ss_pred hH-HHHHHHHHHHHhC
Q 008509 379 YG-VAAATSKEFDKAF 393 (563)
Q Consensus 379 ld-~~~~~~~~l~~~~ 393 (563)
++ .+.+.++++.+.+
T Consensus 239 ~~~g~~~~~~~~~~~~ 254 (495)
T PRK07531 239 GEAGMRHFLAQFGPCL 254 (495)
T ss_pred cHHHHHHHHHHhchhh
Confidence 55 4555666655443
No 24
>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=100.00 E-value=2.5e-35 Score=269.66 Aligned_cols=228 Identities=25% Similarity=0.414 Sum_probs=211.4
Q ss_pred ceeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHc----CCCCHHHHHhhhcCeeeecCc-
Q 008509 147 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTR----GKLTQDKANNALKMLKGVLDY- 221 (563)
Q Consensus 147 ~~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~----g~~~~~~~~~~~~~i~~~~~~- 221 (563)
..||+|+|.|..|+++|..++..||+|.+||+.+++++.+++.+++.+.++-++ |.++. ++.+..|.+++++
T Consensus 3 ~~ki~ivgSgl~g~~WAmlFAs~GyqVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa---~eqla~is~t~~l~ 79 (313)
T KOG2305|consen 3 FGKIAIVGSGLVGSSWAMLFASSGYQVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSA---DEQLALISGTTSLN 79 (313)
T ss_pred ccceeEeecccccchHHHHHhccCceEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccH---HHHHHHHhCCccHH
Confidence 579999999999999999999999999999999999999999999998887665 55654 4456788999999
Q ss_pred ccccCCCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhhhccCCCceeecccCCCCCCCCeEEEEeCC
Q 008509 222 SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTE 301 (563)
Q Consensus 222 ~~l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS~l~i~~la~~~~~~~r~ig~hf~~P~~~~~lvEiv~~~ 301 (563)
+.+++|=.|-|||||++++|+.+|++|++++.+.+|++|+||++.++...+.+.+.++++-.|+.|||+..||+|++|.+
T Consensus 80 E~vk~Ai~iQEcvpE~L~lkk~ly~qlD~i~d~~tIlaSSTSt~mpS~~s~gL~~k~q~lvaHPvNPPyfiPLvElVPaP 159 (313)
T KOG2305|consen 80 ELVKGAIHIQECVPEDLNLKKQLYKQLDEIADPTTILASSTSTFMPSKFSAGLINKEQCLVAHPVNPPYFIPLVELVPAP 159 (313)
T ss_pred HHHhhhhhHHhhchHhhHHHHHHHHHHHHhcCCceEEeccccccChHHHhhhhhhhhheeEecCCCCCcccchheeccCC
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhCCceEEe-cCcchhhhHHHHHHHHHHHHHHHHCCC-CHHHHHHHH-HhcCCC---ccHHHHhh
Q 008509 302 RTSAQVILDLMTVGKIIKKVPVVV-GNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLP---IGPFQLLD 375 (563)
Q Consensus 302 ~t~~~~~~~~~~l~~~lGk~~v~~-~d~~Gfi~nRl~~~~~~Ea~~l~~~G~-~~~~ID~a~-~~~G~p---~GPf~~~D 375 (563)
.|+++++++..++.+.+|..|+.. ++.-||.+||+.++++||..+++..|+ +..|+|.+| .|+|.. .||++.+.
T Consensus 160 wTsp~tVdrt~~lM~sigq~pV~l~rei~Gf~lnriq~Ailne~wrLvasGil~v~dvD~VmS~GLG~RYAflG~lET~H 239 (313)
T KOG2305|consen 160 WTSPDTVDRTRALMRSIGQEPVTLKREILGFALNRIQYAILNETWRLVASGILNVNDVDAVMSAGLGPRYAFLGPLETAH 239 (313)
T ss_pred CCChhHHHHHHHHHHHhCCCCcccccccccceeccccHHHHHHHHHHHHccCcchhhHHHHHhcCCCcchhcccchhhhh
Confidence 999999999999999999999987 578999999999999999999999997 999999999 899975 39999886
Q ss_pred hh
Q 008509 376 LA 377 (563)
Q Consensus 376 ~~ 377 (563)
+.
T Consensus 240 LN 241 (313)
T KOG2305|consen 240 LN 241 (313)
T ss_pred cC
Confidence 53
No 25
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=99.96 E-value=2.2e-28 Score=263.43 Aligned_cols=165 Identities=15% Similarity=0.153 Sum_probs=153.1
Q ss_pred hCCCCeEEEecCCCCCHHHHhhhccCCCceeecccCCCCCCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCceEEecCcch
Q 008509 251 ACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG 330 (563)
Q Consensus 251 ~~~~~~ii~sntS~l~i~~la~~~~~~~r~ig~hf~~P~~~~~lvEiv~~~~t~~~~~~~~~~l~~~lGk~~v~~~d~~G 330 (563)
.+.+++++++++++.+.+..+....+|+|++|+|||||++.|+++||+++..|++++++.+.++++.+||.|++++|+||
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~r~vg~Hf~~P~~~~~lvEvv~~~~Ts~e~~~~~~~~~~~~gk~pi~v~d~~G 416 (507)
T PRK08268 337 PSADGLVLLAPTGGDTTTAAAREGLDAARVVLIDLLLDYAAAKRRTLMAAPATSPAARDAAHALFQQDGKAVSVIRDSPG 416 (507)
T ss_pred cccccceEeeccCcchHHHHHHhcCCcccEEEEeccCCcccCceEEEeCCCCCCHHHHHHHHHHHHHcCCeeEEeCCCcc
Confidence 45678888888888778888777778999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHCCC-CHHHHHHHH-HhcCCCccHHHHhhhhchHHHHHHHHHHHHhCCCCCC-chHHHHHHH
Q 008509 331 FAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSF-QSPLVDLLL 407 (563)
Q Consensus 331 fi~nRl~~~~~~Ea~~l~~~G~-~~~~ID~a~-~~~G~p~GPf~~~D~~Gld~~~~~~~~l~~~~~~~~~-~~~~l~~l~ 407 (563)
|++||++.+++|||++++++|+ +++|||.+| .++|||+|||+|+|.+|+|.++++++.+++.+++++| |++++++|+
T Consensus 417 fi~nRll~~~~nEa~~ll~eGvas~~dID~a~~~g~G~p~GP~~~~D~~Gld~~~~~~~~l~~~~g~~~~~p~~ll~~~v 496 (507)
T PRK08268 417 FVAQRTVAMIVNEAADIAQQGIASPADIDLAMRLGLNYPLGPLAWGDRLGAARILRVLENLQALYGDPRYRPSPWLRRRA 496 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCcCHHHHHHHhCHHHHHHHHHHHHHHhCCCcCCcCHHHHHHH
Confidence 9999999999999999999997 999999999 7999999999999999999999999999999997554 899999999
Q ss_pred HcCCCCcccCccccc
Q 008509 408 KSGRNGKANGKGLYT 422 (563)
Q Consensus 408 ~~g~~G~k~g~GFY~ 422 (563)
++| ..||.
T Consensus 497 ~~G-------~~~~~ 504 (507)
T PRK08268 497 ALG-------LSLRS 504 (507)
T ss_pred HcC-------CCcCC
Confidence 987 46764
No 26
>PF00725 3HCDH: 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006108 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major region of similarities in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3MOG_A 2WTB_A 3ADP_A 3ADO_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B 3K6J_A 1ZCJ_A ....
Probab=99.92 E-value=3.9e-25 Score=186.02 Aligned_cols=94 Identities=40% Similarity=0.689 Sum_probs=87.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHCCC-CHHHHHHHH-HhcCCCccHHHHhhhhchHHHHHHHHHHHHhCCCCCC-chHHHHHH
Q 008509 330 GFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSF-QSPLVDLL 406 (563)
Q Consensus 330 Gfi~nRl~~~~~~Ea~~l~~~G~-~~~~ID~a~-~~~G~p~GPf~~~D~~Gld~~~~~~~~l~~~~~~~~~-~~~~l~~l 406 (563)
||++||++.++++||++++++|+ +|++||+++ .++|||+|||+++|.+|+|++.++++.+++.++++.+ |++++++|
T Consensus 1 GFi~nRl~~~~~~ea~~l~~egvas~~~ID~~~~~~~G~p~Gpf~l~D~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~m 80 (97)
T PF00725_consen 1 GFIVNRLLAALLNEAARLVEEGVASPEDIDRAMRYGLGFPMGPFELADLVGLDVVYHILEYLAAALGDRAFRPSPLLKEM 80 (97)
T ss_dssp TTTHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHTHSSTHHHHHHHHHHHHHHHHHHHHHHHHCCGGGSS-HHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCccchHHHHhCchHHHHHHHHHHHhcCCCcCCchHHHHHH
Confidence 89999999999999999999995 999999999 7899999999999999999999999999999998855 78999999
Q ss_pred HHcCCCCcccCcccccc
Q 008509 407 LKSGRNGKANGKGLYTY 423 (563)
Q Consensus 407 ~~~g~~G~k~g~GFY~y 423 (563)
+++|++|+|+|+|||+|
T Consensus 81 v~~g~~G~k~g~Gfy~Y 97 (97)
T PF00725_consen 81 VEEGRLGRKSGKGFYDY 97 (97)
T ss_dssp HHTT--BGGGTBSSSBE
T ss_pred HHCCCCcCcCCCcceeC
Confidence 99999999999999998
No 27
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=99.89 E-value=1.6e-22 Score=217.42 Aligned_cols=119 Identities=15% Similarity=0.191 Sum_probs=113.3
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHhCCceEEecCcchhhhHHHHHHHHHHHHHHHHCCC-CHHHHHHHH-HhcCCCccH
Q 008509 293 PLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGP 370 (563)
Q Consensus 293 ~lvEiv~~~~t~~~~~~~~~~l~~~lGk~~v~~~d~~Gfi~nRl~~~~~~Ea~~l~~~G~-~~~~ID~a~-~~~G~p~GP 370 (563)
..+||+++..|++++++.+.+++..+||.|++++|.|||++||++.+++|||++++++|+ +++|||.+| .++|||+||
T Consensus 378 ~~vEv~~~~~Ts~e~~~~a~~~~~~~Gk~pi~v~D~pGfi~nRil~~~~nEA~~ll~eGvas~~dID~a~~~g~G~P~GP 457 (503)
T TIGR02279 378 KRIAIAAAAVNPDSATRKAIYYLQQAGKKVLQIADYPGLLILRTVAMLANEAADAVLQGVASAQDIDTAMRLGVNYPYGP 457 (503)
T ss_pred CeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEeCCcccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCcCH
Confidence 578999999999999999999999999999999999999999999999999999999998 899999999 899999999
Q ss_pred HHHhhhhchHHHHHHHHHHHHhCCCCCC-chHHHHHHHHcCC
Q 008509 371 FQLLDLAGYGVAAATSKEFDKAFPDRSF-QSPLVDLLLKSGR 411 (563)
Q Consensus 371 f~~~D~~Gld~~~~~~~~l~~~~~~~~~-~~~~l~~l~~~g~ 411 (563)
|+|+|.+|+|+++++++.+++.+++.+| |+++|++|+..|.
T Consensus 458 ~~~~D~~Gld~~~~~l~~l~~~~~~~~~~p~~~L~~~v~~g~ 499 (503)
T TIGR02279 458 LAWAAQLGWQRILRVLENLQHHYGEERYRPSSLLRRRALLGS 499 (503)
T ss_pred HHHHHHhCHHHHHHHHHHHHHHcCCCcCCcCHHHHHHHHcCC
Confidence 9999999999999999999999986554 8999999998874
No 28
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=99.84 E-value=9.8e-21 Score=174.05 Aligned_cols=142 Identities=23% Similarity=0.335 Sum_probs=110.4
Q ss_pred HHHHH-HcCCCCcccCccccccCCCCC-------CCCCCCchhHHHHHhhhccCCCCCC-Cccc--chHHHHHHHHHHHH
Q 008509 403 VDLLL-KSGRNGKANGKGLYTYEKGSK-------PKPDPSVLPIIEECRRLSNIMPGGK-PISV--TEKEIVEMILFPVV 471 (563)
Q Consensus 403 l~~l~-~~g~~G~k~g~GFY~y~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~i~~r~l~~~~ 471 (563)
+.++. ...+.-+..|-+|+++.+-.+ ...++|+...+..+.. +.|| ++.+ +++||+||+|.+++
T Consensus 137 lt~ia~~~~~~srf~GlHFfNPvPvMKLvEVir~~~TS~eTf~~l~~f~k-----~~gKttVackDtpGFIVNRlLiPyl 211 (298)
T KOG2304|consen 137 LTDIASATQRPSRFAGLHFFNPVPVMKLVEVIRTDDTSDETFNALVDFGK-----AVGKTTVACKDTPGFIVNRLLIPYL 211 (298)
T ss_pred HHHHHhhccChhhhceeeccCCchhHHHhhhhcCCCCCHHHHHHHHHHHH-----HhCCCceeecCCCchhhhHHHHHHH
Confidence 55553 335666778899999765322 2233333322222211 1233 1212 68999999999999
Q ss_pred HHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCcHhHHHHHhCHHHHHHHHHHHHHHhCC--CCCCCHHHHHHHH-----
Q 008509 472 NESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGN--FFKPSRFLEERAT----- 544 (563)
Q Consensus 472 ~ea~~~l~~gv~~~~~diD~~~~~g~g~p~~~gGp~~~~d~~G~~~~~~~~~~~~~~~~~--~~~p~~~l~~~~~----- 544 (563)
+||+++++.|.+ |-+|||.+|++|.|||| |||+++|.+|+|++..+|+-|++.+++ .|.|+|+|.++++
T Consensus 212 ~ea~r~yerGdA-skeDIDtaMklGagyPM---GPfEL~DyvGLDt~kfvmdgwhe~~pe~~~f~psPll~klVaegklG 287 (298)
T KOG2304|consen 212 MEAIRMYERGDA-SKEDIDTAMKLGAGYPM---GPFELADYVGLDTCKFVMDGWHEGYPEDSLFAPSPLLDKLVAEGKLG 287 (298)
T ss_pred HHHHHHHHhcCC-cHhhHHHHHhccCCCCC---ChHHHHHHhhHHHHHHHHHHHHhcCCcccccCCChHHHHHHhccccc
Confidence 999999999999 99999999999999999 999999999999999999999999853 8999999999996
Q ss_pred --cCCCccCCC
Q 008509 545 --KGIPLSAPV 553 (563)
Q Consensus 545 --~g~~f~~~~ 553 (563)
+|+|||+|.
T Consensus 288 rKtg~GfY~Yk 298 (298)
T KOG2304|consen 288 RKTGEGFYKYK 298 (298)
T ss_pred cccCccceecC
Confidence 488999995
No 29
>PF00725 3HCDH: 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006108 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major region of similarities in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3MOG_A 2WTB_A 3ADP_A 3ADO_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B 3K6J_A 1ZCJ_A ....
Probab=99.83 E-value=1.4e-20 Score=158.21 Aligned_cols=89 Identities=34% Similarity=0.521 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCcHhHHHHHhCHHHHHHHHHHHHHHhCC-CCCCCHH
Q 008509 460 KEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGN-FFKPSRF 538 (563)
Q Consensus 460 ~~i~~r~l~~~~~ea~~~l~~gv~~~~~diD~~~~~g~g~p~~~gGp~~~~d~~G~~~~~~~~~~~~~~~~~-~~~p~~~ 538 (563)
++|+||++.+++|||+++++||++ |++|||.+++.|+|||+ |||+++|.+|++.+.++++.+.+.+++ .+.|+++
T Consensus 1 GFi~nRl~~~~~~ea~~l~~egva-s~~~ID~~~~~~~G~p~---Gpf~l~D~~Gl~~~~~~~~~~~~~~~~~~~~~~~~ 76 (97)
T PF00725_consen 1 GFIVNRLLAALLNEAARLVEEGVA-SPEDIDRAMRYGLGFPM---GPFELADLVGLDVVYHILEYLAAALGDRAFRPSPL 76 (97)
T ss_dssp TTTHHHHHHHHHHHHHHHHHTTSS-SHHHHHHHHHHHHTHSS---THHHHHHHHHHHHHHHHHHHHHHHHCCGGGSS-HH
T ss_pred ChHHHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHhCCCCC---ccchHHHHhCchHHHHHHHHHHHhcCCCcCCchHH
Confidence 478999999999999999999998 89999999999999998 999999999999999999999999998 5899999
Q ss_pred HHHHHH-------cCCCccCC
Q 008509 539 LEERAT-------KGIPLSAP 552 (563)
Q Consensus 539 l~~~~~-------~g~~f~~~ 552 (563)
+++|++ +|+|||+|
T Consensus 77 l~~mv~~g~~G~k~g~Gfy~Y 97 (97)
T PF00725_consen 77 LKEMVEEGRLGRKSGKGFYDY 97 (97)
T ss_dssp HHHHHHTT--BGGGTBSSSBE
T ss_pred HHHHHHCCCCcCcCCCcceeC
Confidence 999997 48999998
No 30
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=99.79 E-value=2.7e-18 Score=170.88 Aligned_cols=224 Identities=20% Similarity=0.235 Sum_probs=157.6
Q ss_pred CCceEEecCcchhhhHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHhcCCCccHHHHhhhhchHHHHH-----------HH
Q 008509 319 KKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAA-----------TS 386 (563)
Q Consensus 319 Gk~~v~~~d~~Gfi~nRl~~~~~~Ea~~l~~~G~-~~~~ID~a~~~~G~p~GPf~~~D~~Gld~~~~-----------~~ 386 (563)
+-.+|++.|..-..++|..........++++.|. +.++.+..+..+-...- +.+.-+.|.+.+ +.
T Consensus 25 ~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~---~~~l~~~DlVIEAv~E~levK~~vf 101 (307)
T COG1250 25 AGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTD---LAALKDADLVIEAVVEDLELKKQVF 101 (307)
T ss_pred cCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCc---hhHhccCCEEEEeccccHHHHHHHH
Confidence 4466777777667778877766666677888884 99999999855543322 225555665442 22
Q ss_pred HHHHHhCCCC-CC---chHH-HHHHH-HcCCCCcccCccccccCCCCC-------CCCCCCchhHHHHHhhhccCCCCCC
Q 008509 387 KEFDKAFPDR-SF---QSPL-VDLLL-KSGRNGKANGKGLYTYEKGSK-------PKPDPSVLPIIEECRRLSNIMPGGK 453 (563)
Q Consensus 387 ~~l~~~~~~~-~~---~~~~-l~~l~-~~g~~G~k~g~GFY~y~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (563)
+.+....++. .+ +|.+ +.++. ...+..+..|-+|+++..-.+ ...++++-+.+.+... ..+|
T Consensus 102 ~~l~~~~~~~aIlASNTSsl~it~ia~~~~rper~iG~HFfNP~~~m~LVEvI~g~~T~~e~~~~~~~~~~-----~igK 176 (307)
T COG1250 102 AELEALAKPDAILASNTSSLSITELAEALKRPERFIGLHFFNPVPLMPLVEVIRGEKTSDETVERVVEFAK-----KIGK 176 (307)
T ss_pred HHHHhhcCCCcEEeeccCCCCHHHHHHHhCCchhEEEEeccCCCCcceeEEEecCCCCCHHHHHHHHHHHH-----HcCC
Confidence 2222223222 21 2322 34442 236777889999999865321 2344444333222211 1123
Q ss_pred Cc---ccchHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCcHhHHHHHhCHHHHHHHHHHHHHHhC
Q 008509 454 PI---SVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYG 530 (563)
Q Consensus 454 ~~---~~~~~~i~~r~l~~~~~ea~~~l~~gv~~~~~diD~~~~~g~g~p~~~gGp~~~~d~~G~~~~~~~~~~~~~~~~ 530 (563)
.. .=+++||+||++.++++||++++++|++ ++++||.+|++|+|||| |||+++|.+|+|..++.++.+.+.++
T Consensus 177 ~~vv~~D~pGFi~NRil~~~~~eA~~l~~eGva-~~e~ID~~~~~~~G~pm---Gpf~l~D~~GlD~~~~i~~~~~~~~~ 252 (307)
T COG1250 177 TPVVVKDVPGFIVNRLLAALLNEAIRLLEEGVA-TPEEIDAAMRQGLGLPM---GPFELADLIGLDVMLHIMKVLNETLG 252 (307)
T ss_pred CCEeecCCCceehHhHHHHHHHHHHHHHHhCCC-CHHHHHHHHHhccCCCc---cHHHHHHHHhHHHHHHHHHHHHHhcC
Confidence 21 2268999999999999999999999999 99999999999999998 99999999999999999999998887
Q ss_pred --CCCCCCHHHHHHHH-------cCCCccCCCC
Q 008509 531 --NFFKPSRFLEERAT-------KGIPLSAPVS 554 (563)
Q Consensus 531 --~~~~p~~~l~~~~~-------~g~~f~~~~~ 554 (563)
+.|.|++++++|++ +|+|||+|.+
T Consensus 253 ~~~~~~~~~~~~~~v~~g~lG~Ksg~GfY~y~~ 285 (307)
T COG1250 253 DDPYYRPPPLLRKLVEAGRLGRKSGKGFYDYRG 285 (307)
T ss_pred CCccccccHHHHHHHhcccccccCCCcceeccc
Confidence 37889999999996 5999999985
No 31
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=99.75 E-value=5e-17 Score=160.29 Aligned_cols=189 Identities=20% Similarity=0.192 Sum_probs=140.9
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecC-cccccC
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD-YSEFKD 226 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~-~~~l~~ 226 (563)
+||++||+|.||.+||.+|.++||+|++||+++++.... +...|. ....+ .+++++
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~----------~~~~Ga-------------~~a~s~~eaa~~ 57 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAEL----------LAAAGA-------------TVAASPAEAAAE 57 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHH----------HHHcCC-------------cccCCHHHHHHh
Confidence 479999999999999999999999999999999883221 123342 12223 378899
Q ss_pred CCEEEEecCCChHHHHHHHH--HHHhhCCCCeEEEecCCCCCH--HHHhhhccCCCceeecccCC-CCCCC------CeE
Q 008509 227 VDMVIEAVIESVPLKQKIFS--ELEKACPPHCILATNTSTIDL--NIVGEKTSSQDRIIGAHFFS-PAHVM------PLL 295 (563)
Q Consensus 227 aDlVieav~e~~~~k~~v~~--~l~~~~~~~~ii~sntS~l~i--~~la~~~~~~~r~ig~hf~~-P~~~~------~lv 295 (563)
||+||.|||.+.++...++. .+.+.+++++++++++|.-|. .++++.+. -.|.+|++ |+... ..+
T Consensus 58 aDvVitmv~~~~~V~~V~~g~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~----~~G~~~lDAPVsGg~~~A~~GtL 133 (286)
T COG2084 58 ADVVITMLPDDAAVRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALA----AKGLEFLDAPVSGGVPGAAAGTL 133 (286)
T ss_pred CCEEEEecCCHHHHHHHHhCccchhhcCCCCCEEEECCCCCHHHHHHHHHHHH----hcCCcEEecCccCCchhhhhCce
Confidence 99999999999888777774 588888999999875543332 24555543 23788887 55422 233
Q ss_pred EEEeCCCCCHHHHHHHHHHHHHhCCceEEecCc-ch---hhhHHHHHHH----HHHHHHHHHC-CCCHHHHHHHH-HhcC
Q 008509 296 EIVRTERTSAQVILDLMTVGKIIKKVPVVVGNC-TG---FAVNRAFFPY----SQSARLLVSL-GVDVFRIDSAI-RSFG 365 (563)
Q Consensus 296 Eiv~~~~t~~~~~~~~~~l~~~lGk~~v~~~d~-~G---fi~nRl~~~~----~~Ea~~l~~~-G~~~~~ID~a~-~~~G 365 (563)
.|+.+ .+++.+++++++++.+|+.++++++. .| .++|.++... +.||+.+.+. |++++.+..++ .+.+
T Consensus 134 timvG--G~~~~f~r~~pvl~~~g~~i~~~G~~G~G~~~Kl~nn~l~~~~~~a~aEAl~la~k~Gld~~~~~~vi~~~~~ 211 (286)
T COG2084 134 TIMVG--GDAEAFERAKPVLEAMGKNIVHVGPVGAGQAAKLANNILLAGNIAALAEALALAEKAGLDPDVVLEVISGGAA 211 (286)
T ss_pred EEEeC--CCHHHHHHHHHHHHHhcCceEEECCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcccc
Confidence 44444 48999999999999999999999764 33 5778886543 5699998876 89999999999 5544
No 32
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.74 E-value=8.5e-18 Score=170.06 Aligned_cols=96 Identities=27% Similarity=0.374 Sum_probs=90.5
Q ss_pred chHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCcHhHHHHHhCHHHHHHHHHHHHHHhCCCCCCCH
Q 008509 458 TEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSR 537 (563)
Q Consensus 458 ~~~~i~~r~l~~~~~ea~~~l~~gv~~~~~diD~~~~~g~g~p~~~gGp~~~~d~~G~~~~~~~~~~~~~~~~~~~~p~~ 537 (563)
.++++.||++.+++|||++|+++|++ +++|||.++++|+|||+ |||+++|.+|++.+++.++.+.+.++++|.|++
T Consensus 183 ~~Gf~~nRl~~~~~~ea~~~~~~gv~-~~~~iD~~~~~g~g~p~---Gp~~~~D~~Gl~~~~~~~~~l~~~~~~~~~~~~ 258 (288)
T PRK09260 183 FPGFVTSRISALVGNEAFYMLQEGVA-TAEDIDKAIRLGLNFPM---GPLELGDLVGLDTRLNNLKYLHETLGEKYRPAP 258 (288)
T ss_pred cccHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhCCCCCC---CHHHHHHHhhHHHHHHHHHHHHHHhCCCCCCCH
Confidence 47999999999999999999999998 99999999999999998 999999999999999999999999999999999
Q ss_pred HHHHHHH-------cCCCccCCCCCCc
Q 008509 538 FLEERAT-------KGIPLSAPVSSSS 557 (563)
Q Consensus 538 ~l~~~~~-------~g~~f~~~~~~~~ 557 (563)
+|.+|++ +|+|||+|.++.+
T Consensus 259 ~l~~~~~~g~~G~k~g~Gfy~y~~~~~ 285 (288)
T PRK09260 259 LLEKYVKAGRLGRKTGRGVYDYTNREN 285 (288)
T ss_pred HHHHHHHCCCCccccCCEEEECCCCCC
Confidence 9999996 4899999987654
No 33
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=99.72 E-value=1.2e-16 Score=161.93 Aligned_cols=186 Identities=19% Similarity=0.247 Sum_probs=137.8
Q ss_pred eEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCc-ccccCC
Q 008509 149 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKDV 227 (563)
Q Consensus 149 kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~a 227 (563)
+|+|||+|.||.+||..|+++|++|++||+++++++... +.|.. ..++. +.+++|
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~-----------~~g~~-------------~~~~~~~~~~~a 56 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELL-----------AAGAV-------------TAETARQVTEQA 56 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHH-----------HCCCc-------------ccCCHHHHHhcC
Confidence 599999999999999999999999999999998866532 22321 12233 577899
Q ss_pred CEEEEecCCChHHHHHHHH--HHHhhCCCCeEEEecCCCCCHH---HHhhhccCCCceeecccCCCC-C------CCCeE
Q 008509 228 DMVIEAVIESVPLKQKIFS--ELEKACPPHCILATNTSTIDLN---IVGEKTSSQDRIIGAHFFSPA-H------VMPLL 295 (563)
Q Consensus 228 DlVieav~e~~~~k~~v~~--~l~~~~~~~~ii~sntS~l~i~---~la~~~~~~~r~ig~hf~~P~-~------~~~lv 295 (563)
|+||+|+|++..++..++. .+...++++++|++ +|+.++. ++.+.+... |+||+++| . ....+
T Consensus 57 Divi~~vp~~~~~~~v~~~~~~~~~~~~~g~iivd-~st~~~~~~~~l~~~l~~~----g~~~~~~pv~g~~~~a~~g~l 131 (291)
T TIGR01505 57 DVIFTMVPDSPQVEEVAFGENGIIEGAKPGKTLVD-MSSISPIESKRFAKAVKEK----GIDYLDAPVSGGEIGAIEGTL 131 (291)
T ss_pred CEEEEecCCHHHHHHHHcCcchHhhcCCCCCEEEE-CCCCCHHHHHHHHHHHHHc----CCCEEecCCCCCHHHHhcCCE
Confidence 9999999998877766553 36667788888875 4444443 465555432 66666532 2 12334
Q ss_pred EEEeCCCCCHHHHHHHHHHHHHhCCceEEecC-cch---hhhHHHHHHH----HHHHHHHHHC-CCCHHHHHHHH-HhcC
Q 008509 296 EIVRTERTSAQVILDLMTVGKIIKKVPVVVGN-CTG---FAVNRAFFPY----SQSARLLVSL-GVDVFRIDSAI-RSFG 365 (563)
Q Consensus 296 Eiv~~~~t~~~~~~~~~~l~~~lGk~~v~~~d-~~G---fi~nRl~~~~----~~Ea~~l~~~-G~~~~~ID~a~-~~~G 365 (563)
.++.+ .++++++.+.++++.+|+.++++++ .+| +++|+++... ++|++.+.+. |++++++.+++ .+.+
T Consensus 132 ~i~~g--g~~~~~~~~~~ll~~lg~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gid~~~~~~~l~~~~~ 209 (291)
T TIGR01505 132 SIMVG--GDQAVFDRVKPLFEALGKNIVLVGGNGDGQTCKVANQIIVALNIEAVSEALVFASKAGVDPVRVRQALRGGLA 209 (291)
T ss_pred EEEec--CCHHHHHHHHHHHHHhcCCeEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcc
Confidence 55555 4789999999999999999999964 556 5888887755 7899988865 89999999999 4554
No 34
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.71 E-value=3.5e-17 Score=164.73 Aligned_cols=225 Identities=20% Similarity=0.210 Sum_probs=143.9
Q ss_pred HHhCCceEEecCcchhhhHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHhcCCCccHHHHhhhhchHHHHH----------
Q 008509 316 KIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAA---------- 384 (563)
Q Consensus 316 ~~lGk~~v~~~d~~Gfi~nRl~~~~~~Ea~~l~~~G~-~~~~ID~a~~~~G~p~GPf~~~D~~Gld~~~~---------- 384 (563)
...|..++...-.|. -..+....+-...-.+++.|. +..+.+..+..+-...- +.+..+.|.+.+
T Consensus 25 a~~G~~V~l~d~~~~-~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~---~~~~~~~d~ViEav~E~~~~K~ 100 (286)
T PRK07819 25 ARAGVDVLVFETTEE-LATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTD---LGDFADRQLVIEAVVEDEAVKT 100 (286)
T ss_pred HhCCCEEEEEECCHH-HHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCC---HHHhCCCCEEEEecccCHHHHH
Confidence 444765555433332 333433333444446677775 77777777643322111 123344443332
Q ss_pred -HHHHHHHhC-C-CCCC---chHH-HHHHH-HcCCCCcccCccccccCCCC-------CCCCCCCchhHHHHHhhhccCC
Q 008509 385 -TSKEFDKAF-P-DRSF---QSPL-VDLLL-KSGRNGKANGKGLYTYEKGS-------KPKPDPSVLPIIEECRRLSNIM 449 (563)
Q Consensus 385 -~~~~l~~~~-~-~~~~---~~~~-l~~l~-~~g~~G~k~g~GFY~y~~~~-------~~~~~~~~~~~~~~~~~~~~~~ 449 (563)
+...+.+.. + +... .+.+ +..+. ...+.++..|-+||++..-. ....++++-......-. .
T Consensus 101 ~l~~~l~~~~~~~~~il~snTS~~~~~~la~~~~~~~r~~g~hf~~P~~~~~lvElv~~~~T~~~~~~~~~~~~~----~ 176 (286)
T PRK07819 101 EIFAELDKVVTDPDAVLASNTSSIPIMKLAAATKRPGRVLGLHFFNPVPVLPLVELVPTLVTSEATVARAEEFAS----D 176 (286)
T ss_pred HHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCccEEEEecCCCcccCceEEEeCCCCCCHHHHHHHHHHHH----H
Confidence 222233332 2 2211 1111 33342 34667778889999854321 12344444332222210 0
Q ss_pred CCCC-Cccc--chHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCcHhHHHHHhCHHHHHHHHHHHH
Q 008509 450 PGGK-PISV--TEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWS 526 (563)
Q Consensus 450 ~~~~-~~~~--~~~~i~~r~l~~~~~ea~~~l~~gv~~~~~diD~~~~~g~g~p~~~gGp~~~~d~~G~~~~~~~~~~~~ 526 (563)
..+| +..+ ++++|.||++.+++|||++|+++|++ |++|||.++++|+|||+ |||+++|.+|++.++++++.++
T Consensus 177 ~lgk~pv~v~d~pGfi~nRi~~~~~~Ea~~ll~eGv~-~~~dID~~~~~g~G~p~---Gpf~~~D~~Gld~~~~~~~~l~ 252 (286)
T PRK07819 177 VLGKQVVRAQDRSGFVVNALLVPYLLSAIRMVESGFA-TAEDIDKAMVLGCAHPM---GPLRLSDLVGLDTVKAIADSMY 252 (286)
T ss_pred hCCCCceEecCCCChHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHhCCCCCC---CHHHHHHHhccHHHHHHHHHHH
Confidence 1222 2222 47999999999999999999999998 89999999999999998 9999999999999999999999
Q ss_pred HHhCC-CCCCCHHHHHHHH-------cCCCccCC
Q 008509 527 QLYGN-FFKPSRFLEERAT-------KGIPLSAP 552 (563)
Q Consensus 527 ~~~~~-~~~p~~~l~~~~~-------~g~~f~~~ 552 (563)
+.+++ +|.|+++|++|++ +|+|||+|
T Consensus 253 ~~~~~~~~~p~~~l~~~v~~g~~G~k~g~GfY~y 286 (286)
T PRK07819 253 EEFKEPLYAPPPLLLRMVEAGLLGKKSGRGFYTY 286 (286)
T ss_pred HHcCCCCCCCCHHHHHHHHCCCCcccCCCEeccC
Confidence 98886 8999999999997 48999998
No 35
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.70 E-value=4.1e-17 Score=164.59 Aligned_cols=134 Identities=23% Similarity=0.343 Sum_probs=104.9
Q ss_pred CCCCcccCccccccCCCC-------CCCCCCCchhHHHHHhhhccCCCCCC-Cc--ccchHHHHHHHHHHHHHHHHHHhh
Q 008509 410 GRNGKANGKGLYTYEKGS-------KPKPDPSVLPIIEECRRLSNIMPGGK-PI--SVTEKEIVEMILFPVVNESCRVLE 479 (563)
Q Consensus 410 g~~G~k~g~GFY~y~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~i~~r~l~~~~~ea~~~l~ 479 (563)
++..+..|-+|+.+..-. ....+++....+...- ...|+ +. .-++++|.||++.+++|||++|++
T Consensus 131 ~~~~r~ig~h~~~P~~~~~~vev~~g~~t~~e~~~~~~~l~-----~~lGk~pv~~~d~~g~i~~Ri~~~~~~ea~~~~~ 205 (282)
T PRK05808 131 KRPDKVIGMHFFNPVPVMKLVEIIRGLATSDATHEAVEALA-----KKIGKTPVEVKNAPGFVVNRILIPMINEAIFVLA 205 (282)
T ss_pred CCCcceEEeeccCCcccCccEEEeCCCCCCHHHHHHHHHHH-----HHcCCeeEEecCccChHHHHHHHHHHHHHHHHHH
Confidence 556677888888754311 1223333333322221 11233 11 236799999999999999999999
Q ss_pred cCcCCChhHHHHHHHHhcCCCCCCCcHhHHHHHhCHHHHHHHHHHHHHHhCC-CCCCCHHHHHHHH-------cCCCccC
Q 008509 480 EGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGN-FFKPSRFLEERAT-------KGIPLSA 551 (563)
Q Consensus 480 ~gv~~~~~diD~~~~~g~g~p~~~gGp~~~~d~~G~~~~~~~~~~~~~~~~~-~~~p~~~l~~~~~-------~g~~f~~ 551 (563)
+|++ +|+|||.++++|+|||+ |||+++|.+|++.+.++++.+++.+++ +|.|+++|++|++ +|+|||+
T Consensus 206 ~gv~-~~~diD~~~~~g~g~p~---Gp~~~~D~~Gl~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~g~~G~k~g~Gfy~ 281 (282)
T PRK05808 206 EGVA-TAEDIDEGMKLGCNHPI---GPLALADLIGLDTCLAIMEVLYEGFGDSKYRPCPLLRKMVAAGWLGRKTGRGFYD 281 (282)
T ss_pred hCCC-CHHHHHHHHHhCCCCCC---CHHHHHHHhhhHHHHHHHHHHHHHcCCCcCCCCHHHHHHHHCCCCccccCCcccC
Confidence 9998 89999999999999998 999999999999999999999999886 8999999999997 4899999
Q ss_pred C
Q 008509 552 P 552 (563)
Q Consensus 552 ~ 552 (563)
|
T Consensus 282 y 282 (282)
T PRK05808 282 Y 282 (282)
T ss_pred C
Confidence 8
No 36
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=99.70 E-value=7e-17 Score=163.98 Aligned_cols=98 Identities=23% Similarity=0.350 Sum_probs=90.7
Q ss_pred chHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCcHhHHHHHhCHHHHHHHHHHHHHHhCC-CCCCC
Q 008509 458 TEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGN-FFKPS 536 (563)
Q Consensus 458 ~~~~i~~r~l~~~~~ea~~~l~~gv~~~~~diD~~~~~g~g~p~~~gGp~~~~d~~G~~~~~~~~~~~~~~~~~-~~~p~ 536 (563)
+++++.||++.+++|||++|+++|++ +++|||.++++|+|||+ |||+++|.+|++.+.++++.+++.+++ +|.|+
T Consensus 185 ~~g~i~nri~~~~~~ea~~~~~~gv~-~~~~iD~~~~~g~g~~~---Gp~~~~D~~Gl~~~~~~~~~l~~~~~~~~~~~~ 260 (295)
T PLN02545 185 YPGFIVNRILMPMINEAFYALYTGVA-SKEDIDTGMKLGTNHPM---GPLHLADFIGLDTCLSIMKVLHEGLGDSKYRPC 260 (295)
T ss_pred cccHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhccCCCC---CHHHHHHHhchHHHHHHHHHHHHHcCCCcCCCC
Confidence 47899999999999999999999998 89999999999999998 999999999999999999999998886 89999
Q ss_pred HHHHHHHHc-------CCCccCCCCCCchh
Q 008509 537 RFLEERATK-------GIPLSAPVSSSSTS 559 (563)
Q Consensus 537 ~~l~~~~~~-------g~~f~~~~~~~~~~ 559 (563)
++|++|+++ |+|||+|.++.+.-
T Consensus 261 ~~l~~~~~~g~~G~k~g~Gfy~y~~~~~~~ 290 (295)
T PLN02545 261 PLLVQYVDAGRLGRKSGRGVYHYDGKKRGD 290 (295)
T ss_pred HHHHHHHHCCCCcccCCCeeeECCCCCCCC
Confidence 999999974 79999997765543
No 37
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=99.69 E-value=9.4e-16 Score=155.90 Aligned_cols=188 Identities=17% Similarity=0.209 Sum_probs=138.2
Q ss_pred ceeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCc-cccc
Q 008509 147 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 225 (563)
Q Consensus 147 ~~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 225 (563)
+++|+|||+|.||..+|..+++.|++|++||++++.++... +.| +..++++ +.++
T Consensus 2 ~~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~-----------~~g-------------~~~~~~~~e~~~ 57 (296)
T PRK11559 2 TMKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVI-----------AAG-------------AETASTAKAVAE 57 (296)
T ss_pred CceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHH-----------HCC-------------CeecCCHHHHHh
Confidence 46899999999999999999999999999999998766532 222 2233444 4568
Q ss_pred CCCEEEEecCCChHHHHHHHH--HHHhhCCCCeEEEecCCCCCHH---HHhhhccCCCceeecccCCCCCC-------CC
Q 008509 226 DVDMVIEAVIESVPLKQKIFS--ELEKACPPHCILATNTSTIDLN---IVGEKTSSQDRIIGAHFFSPAHV-------MP 293 (563)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~~--~l~~~~~~~~ii~sntS~l~i~---~la~~~~~~~r~ig~hf~~P~~~-------~~ 293 (563)
+||+||+|+|+...++..++. .+.+.++++++|++ +|+.++. ++++.+... |.||+++|-. ..
T Consensus 58 ~~d~vi~~vp~~~~~~~v~~~~~~~~~~~~~g~iiid-~st~~~~~~~~l~~~~~~~----g~~~~d~pv~g~~~~a~~g 132 (296)
T PRK11559 58 QCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVVID-MSSIAPLASREIAAALKAK----GIEMLDAPVSGGEPKAIDG 132 (296)
T ss_pred cCCEEEEeCCCHHHHHHHHcCcchHhhcCCCCcEEEE-CCCCCHHHHHHHHHHHHHc----CCcEEEcCCCCCHHHHhhC
Confidence 999999999998877766543 46777888998874 4444443 455555322 6777764421 13
Q ss_pred eEEEEeCCCCCHHHHHHHHHHHHHhCCceEEecC-cchhh---hHHHHHH----HHHHHHHHHHC-CCCHHHHHHHH-Hh
Q 008509 294 LLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGN-CTGFA---VNRAFFP----YSQSARLLVSL-GVDVFRIDSAI-RS 363 (563)
Q Consensus 294 lvEiv~~~~t~~~~~~~~~~l~~~lGk~~v~~~d-~~Gfi---~nRl~~~----~~~Ea~~l~~~-G~~~~~ID~a~-~~ 363 (563)
.++++.+ ++++.++.+.++++.+|+.++++++ .+|+. +|+++.. .++|++.+.+. |+++++++.++ .+
T Consensus 133 ~l~i~~g--g~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~l~~~ 210 (296)
T PRK11559 133 TLSVMVG--GDKAIFDKYYDLMKAMAGSVVHTGDIGAGNVTKLANQVIVALNIAAMSEALVLATKAGVNPDLVYQAIRGG 210 (296)
T ss_pred cEEEEEC--CCHHHHHHHHHHHHHhcCCeEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcC
Confidence 3555555 4689999999999999999999964 56664 7776554 47999988875 89999999998 45
Q ss_pred cC
Q 008509 364 FG 365 (563)
Q Consensus 364 ~G 365 (563)
++
T Consensus 211 ~~ 212 (296)
T PRK11559 211 LA 212 (296)
T ss_pred cc
Confidence 44
No 38
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=99.69 E-value=5e-16 Score=174.19 Aligned_cols=224 Identities=17% Similarity=0.160 Sum_probs=150.4
Q ss_pred HhCCceEEecCcchhhhHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHhcCCCccHHHHhhhhchHHHHH-----------
Q 008509 317 IIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAA----------- 384 (563)
Q Consensus 317 ~lGk~~v~~~d~~Gfi~nRl~~~~~~Ea~~l~~~G~-~~~~ID~a~~~~G~p~GPf~~~D~~Gld~~~~----------- 384 (563)
..|..++.+. ......++....+......+++.|. +.++.|.++..+-.. . .+.+..+.|.+.+
T Consensus 326 ~~G~~V~l~d-~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~--~~~~~~~adlViEav~E~l~~K~~ 401 (699)
T TIGR02440 326 KAGIPVRIKD-INPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGT-T--DYRGFKDVDIVIEAVFEDLALKHQ 401 (699)
T ss_pred HcCCeEEEEe-CCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEe-C--ChHHhccCCEEEEeccccHHHHHH
Confidence 3576555543 3333455555544445556677775 888888887432211 1 1223445554443
Q ss_pred HHHHHHHhCCCCC-C---chHH-HHHHHH-cCCCCcccCccccccCCCCC-------CCCCCCchhHHHHHhhhccCCCC
Q 008509 385 TSKEFDKAFPDRS-F---QSPL-VDLLLK-SGRNGKANGKGLYTYEKGSK-------PKPDPSVLPIIEECRRLSNIMPG 451 (563)
Q Consensus 385 ~~~~l~~~~~~~~-~---~~~~-l~~l~~-~g~~G~k~g~GFY~y~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ 451 (563)
+...+.+..++.. . +|.+ +.+|.+ ..+.++..|-+||++....+ ...++++...+..... ..
T Consensus 402 v~~~l~~~~~~~~ilasnTS~l~i~~la~~~~~p~r~~g~HffnP~~~~~lVEvv~g~~T~~~~~~~~~~~~~-----~~ 476 (699)
T TIGR02440 402 MVKDIEQECAAHTIFASNTSSLPIGQIAAAASRPENVIGLHYFSPVEKMPLVEVIPHAGTSEQTIATTVALAK-----KQ 476 (699)
T ss_pred HHHHHHhhCCCCcEEEeCCCCCCHHHHHHhcCCcccEEEEecCCccccCceEEEeCCCCCCHHHHHHHHHHHH-----Hc
Confidence 2333333333321 1 2332 455543 36788899999998764321 3345544433322211 12
Q ss_pred CC-Cccc--chHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCcHhHHHHHhCHHHHHHHHHHHHHH
Q 008509 452 GK-PISV--TEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQL 528 (563)
Q Consensus 452 ~~-~~~~--~~~~i~~r~l~~~~~ea~~~l~~gv~~~~~diD~~~~~g~g~p~~~gGp~~~~d~~G~~~~~~~~~~~~~~ 528 (563)
|| +..+ ++++|.||++.+++|||++++++|+ +++|||.++. ++|||+ |||+++|.+|+|.++++++.+++.
T Consensus 477 gk~pv~v~d~pGfi~nRl~~~~~~Ea~~l~~~G~--~~~dID~a~~-~~G~p~---GPf~l~D~vGld~~~~i~~~l~~~ 550 (699)
T TIGR02440 477 GKTPIVVADKAGFYVNRILAPYMNEAARLLLEGE--PVEHIDKALV-KFGFPV---GPITLLDEVGIDVGAKISPILEAE 550 (699)
T ss_pred CCeEEEEccccchHHHHHHHHHHHHHHHHHHCCC--CHHHHHHHHH-HcCCCc---CHHHHHHHhchHHHHHHHHHHHHh
Confidence 33 2222 5799999999999999999999995 7999999996 999999 999999999999999999999999
Q ss_pred hCCCCCCCHHHHHHHH-------cCCCccCCCCC
Q 008509 529 YGNFFKPSRFLEERAT-------KGIPLSAPVSS 555 (563)
Q Consensus 529 ~~~~~~p~~~l~~~~~-------~g~~f~~~~~~ 555 (563)
+|++|.|+++|++|++ +|+|||+|.+.
T Consensus 551 ~~~~~~~~~~l~~~v~~G~lG~ksg~GfY~y~~~ 584 (699)
T TIGR02440 551 LGERFKAPAVFDKLLSDDRKGRKNGKGFYLYGAA 584 (699)
T ss_pred cCCCCCCcHHHHHHHHCCCCcccCCcEEEeCCCC
Confidence 9999999999999997 48999999754
No 39
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.69 E-value=1.4e-15 Score=154.81 Aligned_cols=232 Identities=18% Similarity=0.169 Sum_probs=151.8
Q ss_pred HHHhCCceEEecCcchh------hhHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHhcCCCc--cHHHHhhhhchHHHHH-
Q 008509 315 GKIIKKVPVVVGNCTGF------AVNRAFFPYSQSARLLVSLGV-DVFRIDSAIRSFGLPI--GPFQLLDLAGYGVAAA- 384 (563)
Q Consensus 315 ~~~lGk~~v~~~d~~Gf------i~nRl~~~~~~Ea~~l~~~G~-~~~~ID~a~~~~G~p~--GPf~~~D~~Gld~~~~- 384 (563)
+...|..++.+.-.+.. ...+....+-.....+++.|. +.++.+.++..+-+-. -+.+. .-+.|.+.+
T Consensus 9 ~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a--~~~aD~ViEa 86 (314)
T PRK08269 9 FAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADA--LADADLVFEA 86 (314)
T ss_pred HHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHH--hccCCEEEEC
Confidence 34457777666434432 233443333344456677785 8888888874332211 12221 233343322
Q ss_pred ----------HHHHHHHhCCCC-CC---chHH-HHHHHH-cCCCCcccCccccccCCCC-------CCCCCCCchhHHHH
Q 008509 385 ----------TSKEFDKAFPDR-SF---QSPL-VDLLLK-SGRNGKANGKGLYTYEKGS-------KPKPDPSVLPIIEE 441 (563)
Q Consensus 385 ----------~~~~l~~~~~~~-~~---~~~~-l~~l~~-~g~~G~k~g~GFY~y~~~~-------~~~~~~~~~~~~~~ 441 (563)
+...+.+...+. .. .+++ +.++.+ ..+..+..|-+|++..... ....++++...+..
T Consensus 87 v~E~~~~K~~~f~~l~~~~~~~~ilaSntS~~~~~~la~~~~~p~r~~g~Hf~~Pp~~~~lvEVv~g~~t~~e~~~~~~~ 166 (314)
T PRK08269 87 VPEVLDAKREALRWLGRHVDADAIIASTTSTFLVTDLQRHVAHPERFLNAHWLNPAYLMPLVEVSPSDATDPAVVDRLAA 166 (314)
T ss_pred CcCCHHHHHHHHHHHHhhCCCCcEEEEccccCCHHHHHhhcCCcccEEEEecCCccccCceEEEeCCCCCCHHHHHHHHH
Confidence 223333333322 22 2333 455544 3577888999999876321 12334444332222
Q ss_pred HhhhccCCCCCC-Cccc--chHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCcHhHHHHHhCHHHH
Q 008509 442 CRRLSNIMPGGK-PISV--TEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYV 518 (563)
Q Consensus 442 ~~~~~~~~~~~~-~~~~--~~~~i~~r~l~~~~~ea~~~l~~gv~~~~~diD~~~~~g~g~p~~~gGp~~~~d~~G~~~~ 518 (563)
.-. ..+| +..+ ++++++||++.++++|++.|+++|++ ++++||.++..|+|||++.+|||+++|.+|++.+
T Consensus 167 ll~-----~lGk~~v~v~d~~Gfi~nri~~~~l~EAl~l~e~g~~-~~e~iD~a~~~g~G~~~~~~Gpf~~~D~~Gld~~ 240 (314)
T PRK08269 167 LLE-----RIGKVPVVCGPSPGYIVPRIQALAMNEAARMVEEGVA-SAEDIDKAIRTGFGLRFAVLGLLEFIDWGGCDIL 240 (314)
T ss_pred HHH-----HcCCcEEEecCCCCcchHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHhCCCCCccCcCHHHHHHhhhHHHH
Confidence 111 1222 1212 35899999999999999999999998 9999999999999999989999999999999999
Q ss_pred HHHHHHHHHHhCC-CCCCCHHHHHHHH-------cCCCccCCCC
Q 008509 519 YTSLKKWSQLYGN-FFKPSRFLEERAT-------KGIPLSAPVS 554 (563)
Q Consensus 519 ~~~~~~~~~~~~~-~~~p~~~l~~~~~-------~g~~f~~~~~ 554 (563)
++.++.+++.+++ +|.|+++|++|++ +|+|||+|.+
T Consensus 241 ~~~~~~l~~~~~~~~~~p~~~l~~~v~~g~~G~ksG~GfY~y~~ 284 (314)
T PRK08269 241 YYASRYLAGEIGPDRFAPPAIVVRNMEEGRDGLRTGAGFYDYAG 284 (314)
T ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHCCCCcccCCCcceeCCC
Confidence 9999999998887 9999999999996 5899999954
No 40
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.68 E-value=6.9e-16 Score=173.47 Aligned_cols=223 Identities=17% Similarity=0.153 Sum_probs=150.8
Q ss_pred HhCCceEEecCcchhhhHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHhcCCCccHHHHhhhhchHHHHH-----------
Q 008509 317 IIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAA----------- 384 (563)
Q Consensus 317 ~lGk~~v~~~d~~Gfi~nRl~~~~~~Ea~~l~~~G~-~~~~ID~a~~~~G~p~GPf~~~D~~Gld~~~~----------- 384 (563)
..|..++.+.-.+ ...++....+-...-.+++.|. +.++.+..+..+-... .+.+..+.|.+.+
T Consensus 331 ~~G~~V~l~d~~~-~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~---~~~~~~~aDlViEav~E~~~~K~~ 406 (708)
T PRK11154 331 KAGLPVRIKDINP-QGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTT---DYRGFKHADVVIEAVFEDLALKQQ 406 (708)
T ss_pred HcCCeEEEEeCCH-HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeC---ChHHhccCCEEeecccccHHHHHH
Confidence 5575555543333 3344544444444556677775 8888888774332111 2234556665553
Q ss_pred HHHHHHHhCCCC-CC---chHH-HHHHHH-cCCCCcccCccccccCCCC-------CCCCCCCchhHHHHHhhhccCCCC
Q 008509 385 TSKEFDKAFPDR-SF---QSPL-VDLLLK-SGRNGKANGKGLYTYEKGS-------KPKPDPSVLPIIEECRRLSNIMPG 451 (563)
Q Consensus 385 ~~~~l~~~~~~~-~~---~~~~-l~~l~~-~g~~G~k~g~GFY~y~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ 451 (563)
+...+.+..++. .+ .|.+ +.+|.+ ..+.++..|-+||++.... ....++++......... ..
T Consensus 407 v~~~le~~~~~~~ilasnTS~l~i~~la~~~~~p~r~ig~Hff~P~~~~~lVEvv~g~~Ts~~~~~~~~~~~~-----~~ 481 (708)
T PRK11154 407 MVAEVEQNCAPHTIFASNTSSLPIGQIAAAAARPEQVIGLHYFSPVEKMPLVEVIPHAKTSAETIATTVALAK-----KQ 481 (708)
T ss_pred HHHHHHhhCCCCcEEEECCCCCCHHHHHHhcCcccceEEEecCCccccCceEEEECCCCCCHHHHHHHHHHHH-----Hc
Confidence 222233333222 21 2332 455543 3678889999999876432 13455655544433322 12
Q ss_pred CC-Cccc--chHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCcHhHHHHHhCHHHHHHHHHHHHHH
Q 008509 452 GK-PISV--TEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQL 528 (563)
Q Consensus 452 ~~-~~~~--~~~~i~~r~l~~~~~ea~~~l~~gv~~~~~diD~~~~~g~g~p~~~gGp~~~~d~~G~~~~~~~~~~~~~~ 528 (563)
+| +..+ ++++|.||++.+++|||++++++|+ +++|||.+++ ++|||+ |||+++|.+|+|.++++++.+++.
T Consensus 482 gk~pv~v~d~pGfi~nRl~~~~~~EA~~lv~eGv--~~~dID~a~~-~~G~p~---GPf~~~D~~Gld~~~~i~~~l~~~ 555 (708)
T PRK11154 482 GKTPIVVRDGAGFYVNRILAPYINEAARLLLEGE--PIEHIDAALV-KFGFPV---GPITLLDEVGIDVGTKIIPILEAA 555 (708)
T ss_pred CCceEEEeccCcHHHHHHHHHHHHHHHHHHHcCC--CHHHHHHHHH-HcCCCC---CHHHHHHHhhhHHHHHHHHHHHHH
Confidence 23 2222 5699999999999999999999997 6999999998 999999 999999999999999999999998
Q ss_pred hCCCCCCCHHHHHHHH-------cCCCccCCCC
Q 008509 529 YGNFFKPSRFLEERAT-------KGIPLSAPVS 554 (563)
Q Consensus 529 ~~~~~~p~~~l~~~~~-------~g~~f~~~~~ 554 (563)
++++|.|+++|++|++ +|+|||+|.+
T Consensus 556 ~~~~~~~~~~l~~~v~~g~~G~k~g~GfY~y~~ 588 (708)
T PRK11154 556 LGERFSAPAAFDKLLNDDRKGRKNGRGFYLYGQ 588 (708)
T ss_pred cCCCCCCCHHHHHHHHCCCCcccCCceEEECCC
Confidence 9999999999999996 4899999975
No 41
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.68 E-value=9.9e-17 Score=162.65 Aligned_cols=96 Identities=23% Similarity=0.314 Sum_probs=89.3
Q ss_pred chHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCcHhHHHHHhCHHHHHHHHHHHHHHhCC-CCCCC
Q 008509 458 TEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGN-FFKPS 536 (563)
Q Consensus 458 ~~~~i~~r~l~~~~~ea~~~l~~gv~~~~~diD~~~~~g~g~p~~~gGp~~~~d~~G~~~~~~~~~~~~~~~~~-~~~p~ 536 (563)
.+++|+||++.+++||+++++++|++ +++|||.++++|+|||+ |||+++|.+|++.+.++++.+++.+++ +|.|+
T Consensus 185 ~pg~i~nRl~~~~~~ea~~~~~~g~~-~~~~iD~~~~~g~g~~~---GP~~~~D~~Gl~~~~~~~~~~~~~~~~~~~~p~ 260 (292)
T PRK07530 185 FPAFIVNRILLPMINEAIYTLYEGVG-SVEAIDTAMKLGANHPM---GPLELADFIGLDTCLSIMQVLHDGLADSKYRPC 260 (292)
T ss_pred cCChHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHhCCCCCC---CHHHHHHHhhhHHHHHHHHHHHHHcCCCcCCCC
Confidence 46899999999999999999999998 99999999999999997 999999999999999999999998876 89999
Q ss_pred HHHHHHH-------HcCCCccCCCCCCc
Q 008509 537 RFLEERA-------TKGIPLSAPVSSSS 557 (563)
Q Consensus 537 ~~l~~~~-------~~g~~f~~~~~~~~ 557 (563)
++|++|+ ++|+|||+|.+..+
T Consensus 261 ~~l~~~v~~g~~G~k~g~Gfy~y~~~~~ 288 (292)
T PRK07530 261 PLLVKYVEAGWLGRKTGRGFYDYRGEVP 288 (292)
T ss_pred HHHHHHHHCCCCccccCCEeeeCCCCcc
Confidence 9999999 56999999976644
No 42
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.66 E-value=1.2e-15 Score=171.62 Aligned_cols=227 Identities=14% Similarity=0.144 Sum_probs=150.9
Q ss_pred HHHhCCceEEecCcchhhhHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHhcCCCccHHHHhhhhchHHHHH---------
Q 008509 315 GKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAA--------- 384 (563)
Q Consensus 315 ~~~lGk~~v~~~d~~Gfi~nRl~~~~~~Ea~~l~~~G~-~~~~ID~a~~~~G~p~GPf~~~D~~Gld~~~~--------- 384 (563)
+..-|..++.+ |.......+....+-...-.+++.|. +.++.+.++..+-+. . .+.+..+.|.+.+
T Consensus 332 ~a~~G~~V~l~-d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~--~~~~~~~aDlViEav~E~l~~K 407 (715)
T PRK11730 332 SASKGVPVIMK-DINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPT-L--DYAGFERVDVVVEAVVENPKVK 407 (715)
T ss_pred HHhCCCeEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-C--CHHHhcCCCEEEecccCcHHHH
Confidence 34457555544 44344444544444445556777875 888898887433211 1 2334556665543
Q ss_pred --HHHHHHHhCCCCC-C---chHH-HHHHHH-cCCCCcccCccccccCCCCC-------CCCCCCchhHHHHHhhhccCC
Q 008509 385 --TSKEFDKAFPDRS-F---QSPL-VDLLLK-SGRNGKANGKGLYTYEKGSK-------PKPDPSVLPIIEECRRLSNIM 449 (563)
Q Consensus 385 --~~~~l~~~~~~~~-~---~~~~-l~~l~~-~g~~G~k~g~GFY~y~~~~~-------~~~~~~~~~~~~~~~~~~~~~ 449 (563)
+...+.+..++.. . .|.+ +.++.+ ..+..+..|-+||++....+ ...++++.........
T Consensus 408 ~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~~g~Hff~P~~~~~lVEvv~g~~T~~~~~~~~~~~~~----- 482 (715)
T PRK11730 408 AAVLAEVEQKVREDTILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEKTSDETIATVVAYAS----- 482 (715)
T ss_pred HHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCCccEEEEecCCcccccceEEeeCCCCCCHHHHHHHHHHHH-----
Confidence 2223333333322 1 2333 455543 36788899999998764321 2345544433222211
Q ss_pred CCCC-Ccc--cchHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCcHhHHHHHhCHHHHHHHHHHHH
Q 008509 450 PGGK-PIS--VTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWS 526 (563)
Q Consensus 450 ~~~~-~~~--~~~~~i~~r~l~~~~~ea~~~l~~gv~~~~~diD~~~~~g~g~p~~~gGp~~~~d~~G~~~~~~~~~~~~ 526 (563)
..|| +.. =++++|.||++.+++||+++++++| + +++|||.+++.++|||+ |||+++|.+|+|.++++++.+.
T Consensus 483 ~lgk~pv~v~d~pGfv~nRi~~~~~~ea~~lv~~G-a-~~e~ID~a~~~~~G~~~---GP~~~~D~~Gld~~~~~~~~~~ 557 (715)
T PRK11730 483 KMGKTPIVVNDCPGFFVNRVLFPYFAGFSQLLRDG-A-DFRQIDKVMEKQFGWPM---GPAYLLDVVGIDTAHHAQAVMA 557 (715)
T ss_pred HhCCceEEecCcCchhHHHHHHHHHHHHHHHHHcC-C-CHHHHHHHHHhhCCCcc---CHHHHHHhhchHHHHHHHHHHH
Confidence 1223 222 2689999999999999999999999 6 89999999999999998 9999999999999999999999
Q ss_pred HHhCCC--CCCCHHHHHHHH-------cCCCccCCCCC
Q 008509 527 QLYGNF--FKPSRFLEERAT-------KGIPLSAPVSS 555 (563)
Q Consensus 527 ~~~~~~--~~p~~~l~~~~~-------~g~~f~~~~~~ 555 (563)
..++++ +.|+++|++|++ +|+|||+|++.
T Consensus 558 ~~~~~~~~~~~~~~l~~~v~~G~~G~k~g~GfY~y~~~ 595 (715)
T PRK11730 558 EGFPDRMKKDYRDAIDVLFEAKRFGQKNGKGFYRYEED 595 (715)
T ss_pred HhcCCccccchhHHHHHHHHCCCCccccCCEeEecccC
Confidence 888774 346789999997 58999999643
No 43
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=99.65 E-value=2.2e-15 Score=151.61 Aligned_cols=154 Identities=19% Similarity=0.199 Sum_probs=119.9
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCcccccCC
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 227 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 227 (563)
++|+|||+|.||.+||..|.++|++|++||++++.++.+. +.|.++ ..+++.+.+++|
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~-----------~~g~~~-----------~~~~~~~~~~~a 58 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAI-----------ERGLVD-----------EASTDLSLLKDC 58 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-----------HCCCcc-----------cccCCHhHhcCC
Confidence 3799999999999999999999999999999998876643 233221 123445668899
Q ss_pred CEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhhhccCCCceeecccCCCCC------------CCCeE
Q 008509 228 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAH------------VMPLL 295 (563)
Q Consensus 228 DlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS~l~i~~la~~~~~~~r~ig~hf~~P~~------------~~~lv 295 (563)
|+||+|+|++.. .++++++.+.++++++|.+ +++.....+........+|+|+||+.+.. ..+.+
T Consensus 59 DlVilavp~~~~--~~~~~~l~~~l~~~~ii~d-~~Svk~~~~~~~~~~~~~~v~~HPm~G~~~~g~~~a~~~lf~g~~~ 135 (279)
T PRK07417 59 DLVILALPIGLL--LPPSEQLIPALPPEAIVTD-VGSVKAPIVEAWEKLHPRFVGSHPMAGTAESGVEAGQRGLFKNRPW 135 (279)
T ss_pred CEEEEcCCHHHH--HHHHHHHHHhCCCCcEEEe-CcchHHHHHHHHHHhhCCceeeCCcCCCCcchHHHhhHHHhCCCcE
Confidence 999999997654 4678899998999988854 55566665655555556899999976443 24556
Q ss_pred EEEeCCCCCHHHHHHHHHHHHHhCCceEEec
Q 008509 296 EIVRTERTSAQVILDLMTVGKIIKKVPVVVG 326 (563)
Q Consensus 296 Eiv~~~~t~~~~~~~~~~l~~~lGk~~v~~~ 326 (563)
.+++++.++++.++.+..+++.+|..++.+.
T Consensus 136 ~l~p~~~~~~~~~~~v~~l~~~lG~~~v~~~ 166 (279)
T PRK07417 136 VLTPTENTDLNALAIVEELAVSLGSKIYTAD 166 (279)
T ss_pred EEccCCCCCHHHHHHHHHHHHHcCCEEEEcC
Confidence 6888888999999999999999999988874
No 44
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.65 E-value=4.5e-16 Score=157.31 Aligned_cols=92 Identities=17% Similarity=0.282 Sum_probs=85.6
Q ss_pred chHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCcHhHHHHHhCHHHHHHHHHHHHHHhCCCC--CC
Q 008509 458 TEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFF--KP 535 (563)
Q Consensus 458 ~~~~i~~r~l~~~~~ea~~~l~~gv~~~~~diD~~~~~g~g~p~~~gGp~~~~d~~G~~~~~~~~~~~~~~~~~~~--~p 535 (563)
++++|.||++.+++|||++++++|++ |++|||.+|+.|+|||+ |||+++|.+|+|.+.++++.+.+.+++.+ .|
T Consensus 187 ~pgfi~nRi~~~~~~ea~~l~~~g~a-~~~~iD~a~~~~~g~~~---Gp~~~~D~~Gld~~~~~~~~~~~~~~~~~~~~~ 262 (287)
T PRK08293 187 QPGYILNSLLVPFLSAALALWAKGVA-DPETIDKTWMIATGAPM---GPFGILDIVGLDTAYNITSNWAEATDDENAKKA 262 (287)
T ss_pred CCCHhHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhccCCCc---CHHHHHHHhchHHHHHHHHHHHHHhCCcccccc
Confidence 57899999999999999999999999 99999999999999998 99999999999999999999999888743 48
Q ss_pred CHHHHHHHH-------cCCCccCCC
Q 008509 536 SRFLEERAT-------KGIPLSAPV 553 (563)
Q Consensus 536 ~~~l~~~~~-------~g~~f~~~~ 553 (563)
+++|++|++ +|+|||+|.
T Consensus 263 ~~~l~~~v~~g~~G~k~g~Gfy~y~ 287 (287)
T PRK08293 263 AALLKEYIDKGKLGVATGEGFYNYP 287 (287)
T ss_pred hHHHHHHHHCCCCcccCCCccccCc
Confidence 899999997 489999994
No 45
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.64 E-value=3.7e-16 Score=158.34 Aligned_cols=91 Identities=22% Similarity=0.234 Sum_probs=86.5
Q ss_pred chHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCcHhHHHHHhCHHHHHHHHHHHHHHhCC-CCCCC
Q 008509 458 TEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGN-FFKPS 536 (563)
Q Consensus 458 ~~~~i~~r~l~~~~~ea~~~l~~gv~~~~~diD~~~~~g~g~p~~~gGp~~~~d~~G~~~~~~~~~~~~~~~~~-~~~p~ 536 (563)
.++++.||++.+++|||++++++|++ |++|||.+++.|+|||+ |||+++|.+|+|.+.++++.+++.+++ +|.|+
T Consensus 187 ~pgfv~nRl~~~~~~ea~~~~~~g~a-~~~~iD~~~~~~~g~~~---Gp~~~~D~~Gl~~~~~~~~~l~~~~~~~~~~~~ 262 (291)
T PRK06035 187 VPGFFTTRFIEGWLLEAIRSFEIGIA-TIKDIDEMCKLAFGFPM---GPFELMDIIGIDTVYHIAEYLYEETGDPQFIPP 262 (291)
T ss_pred CCCeeHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHhhcCCCcc---CHHHHHHHhhHHHHHHHHHHHHHHcCCCcCCcc
Confidence 57899999999999999999999999 99999999999999998 999999999999999999999998886 78999
Q ss_pred HHHHHHHH-------c-----CCCccCC
Q 008509 537 RFLEERAT-------K-----GIPLSAP 552 (563)
Q Consensus 537 ~~l~~~~~-------~-----g~~f~~~ 552 (563)
++|++|++ + |+|||+|
T Consensus 263 ~~l~~~v~~g~~G~k~~~~~~g~Gfy~y 290 (291)
T PRK06035 263 NSLKQMVLNGYVGDKKVKYGSKGGWFDY 290 (291)
T ss_pred HHHHHHHHCCCCcCCCCCCCCCceeeec
Confidence 99999996 5 7999998
No 46
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=99.64 E-value=2.7e-15 Score=168.34 Aligned_cols=226 Identities=13% Similarity=0.159 Sum_probs=148.5
Q ss_pred HHhCCceEEecCcchhhhHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHhcCCCccHHHHhhhhchHHHHH----------
Q 008509 316 KIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAA---------- 384 (563)
Q Consensus 316 ~~lGk~~v~~~d~~Gfi~nRl~~~~~~Ea~~l~~~G~-~~~~ID~a~~~~G~p~GPf~~~D~~Gld~~~~---------- 384 (563)
..-|..++.+ |.......|....+-...-.+++.|. +.++.|.++..+-.. -.+.+..+.|.+.+
T Consensus 333 a~~G~~V~l~-d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~---~~~~~~~~aDlViEav~E~l~~K~ 408 (714)
T TIGR02437 333 ASKGTPIVMK-DINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPT---LSYAGFDNVDIVVEAVVENPKVKA 408 (714)
T ss_pred HhCCCeEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe---CCHHHhcCCCEEEEcCcccHHHHH
Confidence 3446555544 33333334544444444556677775 899999987433211 12334455554442
Q ss_pred -HHHHHHHhCCCC-CC---chHH-HHHHHH-cCCCCcccCccccccCCCCC-------CCCCCCchhHHHHHhhhccCCC
Q 008509 385 -TSKEFDKAFPDR-SF---QSPL-VDLLLK-SGRNGKANGKGLYTYEKGSK-------PKPDPSVLPIIEECRRLSNIMP 450 (563)
Q Consensus 385 -~~~~l~~~~~~~-~~---~~~~-l~~l~~-~g~~G~k~g~GFY~y~~~~~-------~~~~~~~~~~~~~~~~~~~~~~ 450 (563)
+...+....++. .. +|.+ +.++.+ ..+..+..|-+||++..-.+ ...++++......... .
T Consensus 409 ~vf~~l~~~~~~~~ilasnTS~l~i~~ia~~~~~p~r~ig~Hff~P~~~~~lvEvv~g~~Ts~~~~~~~~~~~~-----~ 483 (714)
T TIGR02437 409 AVLAEVEQHVREDAILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEKSSDETIATVVAYAS-----K 483 (714)
T ss_pred HHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEecCCCcccCceEeecCCCCCCHHHHHHHHHHHH-----H
Confidence 233333333332 21 3333 455543 36788899999998765321 2344444332222211 1
Q ss_pred CCC-Ccc--cchHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCcHhHHHHHhCHHHHHHHHHHHHH
Q 008509 451 GGK-PIS--VTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQ 527 (563)
Q Consensus 451 ~~~-~~~--~~~~~i~~r~l~~~~~ea~~~l~~gv~~~~~diD~~~~~g~g~p~~~gGp~~~~d~~G~~~~~~~~~~~~~ 527 (563)
.+| +.. -++++|.||++.++++||++++++| + ++++||.++..++|||+ |||+++|.+|+|..+++++.+.+
T Consensus 484 lgk~pv~v~d~pGfi~NRl~~~~~~ea~~l~~eG-~-~~~~ID~a~~~~~G~p~---GPf~l~D~~Gld~~~~i~~~~~~ 558 (714)
T TIGR02437 484 MGKTPIVVNDCPGFFVNRVLFPYFGGFSKLLRDG-A-DFVRIDKVMEKQFGWPM---GPAYLLDVVGIDTGHHAQAVMAE 558 (714)
T ss_pred cCCEEEEeCCcccchHHHHHHHHHHHHHHHHHCC-C-CHHHHHHHHHhcCCCcc---CHHHHHHhhhHHHHHHHHHHHHH
Confidence 233 221 2579999999999999999999999 5 89999999999999999 99999999999999999999998
Q ss_pred HhCCCC--CCCHHHHHHHH-------cCCCccCCCCC
Q 008509 528 LYGNFF--KPSRFLEERAT-------KGIPLSAPVSS 555 (563)
Q Consensus 528 ~~~~~~--~p~~~l~~~~~-------~g~~f~~~~~~ 555 (563)
.+++++ .|+++|++|++ +|+|||+|.++
T Consensus 559 ~~~~~~~~~~~~~l~~~v~~G~lG~K~g~GfY~y~~~ 595 (714)
T TIGR02437 559 GFPDRMGKDGRDAIDALFEAKRLGQKNGKGFYAYEAD 595 (714)
T ss_pred hcCcccccchhHHHHHHHHCCCCcccCCCEEEecccC
Confidence 887753 45789999996 48999999643
No 47
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=99.64 E-value=8.5e-15 Score=164.70 Aligned_cols=226 Identities=17% Similarity=0.180 Sum_probs=152.0
Q ss_pred HHHhCCceEEecCcchhhhHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHhcCCCccHHHHhhhhchHHHHH-HHH-----
Q 008509 315 GKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAA-TSK----- 387 (563)
Q Consensus 315 ~~~lGk~~v~~~d~~Gfi~nRl~~~~~~Ea~~l~~~G~-~~~~ID~a~~~~G~p~GPf~~~D~~Gld~~~~-~~~----- 387 (563)
+..-|..++.. |.......+....+-......++.|. +.++.|.++..+-.. -.+.+..+.|.+.+ +.|
T Consensus 354 ~a~~G~~V~l~-d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~---~~~~~~~~aDlViEAv~E~l~~K 429 (737)
T TIGR02441 354 SVDKGLKTVLK-DATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPT---LDYSGFKNADMVIEAVFEDLSLK 429 (737)
T ss_pred HHhCCCcEEEe-cCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe---CCHHHhccCCeehhhccccHHHH
Confidence 34447555544 44444555555544445556677774 999999988433221 12334556666654 222
Q ss_pred -----HHHHhCCCC-CC---chHH-HHHHHH-cCCCCcccCccccccCCCCC-------CCCCCCchhHHHHHhhhccCC
Q 008509 388 -----EFDKAFPDR-SF---QSPL-VDLLLK-SGRNGKANGKGLYTYEKGSK-------PKPDPSVLPIIEECRRLSNIM 449 (563)
Q Consensus 388 -----~l~~~~~~~-~~---~~~~-l~~l~~-~g~~G~k~g~GFY~y~~~~~-------~~~~~~~~~~~~~~~~~~~~~ 449 (563)
.+.+..++. .. +|.+ +.++.+ ..+..+..|-+||++..-.+ ...++++.........
T Consensus 430 ~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~ig~Hff~P~~~m~LvEvv~g~~Ts~~~~~~~~~~~~----- 504 (737)
T TIGR02441 430 HKVIKEVEAVVPPHCIIASNTSALPIKDIAAVSSRPEKVIGMHYFSPVDKMQLLEIITHDGTSKDTLASAVAVGL----- 504 (737)
T ss_pred HHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCccceEEEeccCCcccCceEEEeCCCCCCHHHHHHHHHHHH-----
Confidence 232333332 22 3333 455543 36788889999998765321 2344444332222211
Q ss_pred CCCC-Cc--ccchHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCcHhHHHHHhCHHHHHHHHHHHH
Q 008509 450 PGGK-PI--SVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWS 526 (563)
Q Consensus 450 ~~~~-~~--~~~~~~i~~r~l~~~~~ea~~~l~~gv~~~~~diD~~~~~g~g~p~~~gGp~~~~d~~G~~~~~~~~~~~~ 526 (563)
..+| +. .-++++|.||++.+++|||++++++|+ +++|||.++ .++|||+ |||+++|.+|+|.++++++.+.
T Consensus 505 ~lgk~pv~v~d~pGFi~NRi~~~~~~ea~~lv~eGv--~~~~ID~a~-~~~G~p~---GP~~l~D~vGld~~~~v~~~l~ 578 (737)
T TIGR02441 505 KQGKVVIVVKDGPGFYTTRCLGPMLAEVIRLLQEGV--DPKKLDKLT-TKFGFPV---GAATLADEVGVDVAEHVAEDLG 578 (737)
T ss_pred HCCCeEEEECCcCCchHHHHHHHHHHHHHHHHHcCC--CHHHHHHHH-HHcCCCC---CHHHHHHHhhHHHHHHHHHHHH
Confidence 1233 22 226799999999999999999999997 799999996 6999999 9999999999999999999999
Q ss_pred HHhCCCCC--CCHHHHHHHH-------cCCCccCCCCC
Q 008509 527 QLYGNFFK--PSRFLEERAT-------KGIPLSAPVSS 555 (563)
Q Consensus 527 ~~~~~~~~--p~~~l~~~~~-------~g~~f~~~~~~ 555 (563)
+.++++|. |++++++|++ +|+|||+|.++
T Consensus 579 ~~~~~~~~~~~~~~l~~~v~~G~~G~k~G~GfY~y~~~ 616 (737)
T TIGR02441 579 KAFGERFGGGSAELLSELVKAGFLGRKSGKGIFIYQEG 616 (737)
T ss_pred HhcCcccccccCHHHHHHHHCCCCcccCCCeeEEcCCC
Confidence 98888774 7899999997 48899999754
No 48
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=99.60 E-value=6.3e-14 Score=146.38 Aligned_cols=171 Identities=19% Similarity=0.177 Sum_probs=124.6
Q ss_pred cceeEEEEc-CCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCcccc
Q 008509 146 GVRKVAVIG-GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF 224 (563)
Q Consensus 146 ~~~kv~ViG-aG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l 224 (563)
.+++|+||| +|.||+++|..|..+|++|++||++... . . .+.+
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~~--~-------------------~---------------~~~~ 140 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDWD--R-------------------A---------------EDIL 140 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcch--h-------------------H---------------HHHH
Confidence 468999999 8999999999999999999999986310 0 0 0235
Q ss_pred cCCCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCCC--CCHHHHhhhccCCCceeecccCCCCCCCCeEE--EEeC
Q 008509 225 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLE--IVRT 300 (563)
Q Consensus 225 ~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS~--l~i~~la~~~~~~~r~ig~hf~~P~~~~~lvE--iv~~ 300 (563)
++||+||+|+|++. ..+++.++.+ +++++||++++|+ .++..+.+... .+|+|.||+.++....+.. ++..
T Consensus 141 ~~aDlVilavP~~~--~~~~~~~l~~-l~~~~iv~Dv~SvK~~~~~~~~~~~~--~~fvg~HPm~G~~~~~~~~~~vv~~ 215 (374)
T PRK11199 141 ADAGMVIVSVPIHL--TEEVIARLPP-LPEDCILVDLTSVKNAPLQAMLAAHS--GPVLGLHPMFGPDVGSLAKQVVVVC 215 (374)
T ss_pred hcCCEEEEeCcHHH--HHHHHHHHhC-CCCCcEEEECCCccHHHHHHHHHhCC--CCEEeeCCCCCCCCcccCCCEEEEc
Confidence 78999999999885 5688899988 8999999999885 44666666543 3699999999876554433 4556
Q ss_pred CCCCHHHHHHHHHHHHHhCCceEEec-CcchhhhHHHH-HHH---HHHHHHHHHCCCCHHHH
Q 008509 301 ERTSAQVILDLMTVGKIIKKVPVVVG-NCTGFAVNRAF-FPY---SQSARLLVSLGVDVFRI 357 (563)
Q Consensus 301 ~~t~~~~~~~~~~l~~~lGk~~v~~~-d~~Gfi~nRl~-~~~---~~Ea~~l~~~G~~~~~I 357 (563)
+.++++.++.+.+++..+|..++.+. +....++..+. .+. +.++..+.+.+.+.+++
T Consensus 216 ~~~~~~~~~~~~~l~~~lG~~v~~~~~~~HD~~~a~vshLpH~~a~al~~~l~~~~~~~~~~ 277 (374)
T PRK11199 216 DGRQPEAYQWLLEQIQVWGARLHRISAVEHDQNMAFIQALRHFATFAYGLHLAKENVDLEQL 277 (374)
T ss_pred CCCCchHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 66788899999999999999999985 33344433332 121 23444555556665553
No 49
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.57 E-value=6.8e-15 Score=150.66 Aligned_cols=97 Identities=22% Similarity=0.194 Sum_probs=91.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCcHhHHHHHhCHHHHHHHHHHHHHHhCCCCCCCHH
Q 008509 459 EKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRF 538 (563)
Q Consensus 459 ~~~i~~r~l~~~~~ea~~~l~~gv~~~~~diD~~~~~g~g~p~~~gGp~~~~d~~G~~~~~~~~~~~~~~~~~~~~p~~~ 538 (563)
+++++||++.++++||+.++++|++ ++++||.++.+|+|||+++.|||+++|.+|++.+.+.++.+++.++++|.|+++
T Consensus 183 ~G~i~nr~~~~~~~Ea~~l~~~g~~-~~~~id~~~~~~~g~~~~~~Gp~~~~D~~Gl~~~~~~~~~l~~~~~~~~~~~~~ 261 (311)
T PRK06130 183 PGFIANRIQHALAREAISLLEKGVA-SAEDIDEVVKWSLGIRLALTGPLEQRDMNGLDVHLAVASYLYQDLENRTTPSPL 261 (311)
T ss_pred CCcHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhcCCCCccCCCHHHHhhhhccchHHHHHHHHHHhcCCcCCCCHH
Confidence 5789999999999999999999998 899999999999999999999999999999999999999999989889999999
Q ss_pred HHHHH-------HcCCCccCCCCCC
Q 008509 539 LEERA-------TKGIPLSAPVSSS 556 (563)
Q Consensus 539 l~~~~-------~~g~~f~~~~~~~ 556 (563)
|++|+ ++|+|||+|.+..
T Consensus 262 l~~~~~~g~~G~~~g~gfy~y~~~~ 286 (311)
T PRK06130 262 LEEKVEAGELGAKSGQGFYAWPPER 286 (311)
T ss_pred HHHHHHcCCccccCCCcCccCCCCC
Confidence 99999 5689999996543
No 50
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=99.56 E-value=3.1e-13 Score=130.90 Aligned_cols=192 Identities=19% Similarity=0.189 Sum_probs=135.3
Q ss_pred cceeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCccccc
Q 008509 146 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 225 (563)
Q Consensus 146 ~~~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 225 (563)
..++|++||.|.||++|+.+|.++||+|++|||+.++.+.. .+.|.- ...+..|..+
T Consensus 34 s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f-----------~~~Ga~------------v~~sPaeVae 90 (327)
T KOG0409|consen 34 SKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEF-----------QEAGAR------------VANSPAEVAE 90 (327)
T ss_pred ccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHH-----------HHhchh------------hhCCHHHHHh
Confidence 46899999999999999999999999999999999887663 344421 1122336779
Q ss_pred CCCEEEEecCCChHHHHHHHHH--HHhhCCCCeEEEecCCCCC---HHHHhhhccCCCceeecccCC-CCCC------CC
Q 008509 226 DVDMVIEAVIESVPLKQKIFSE--LEKACPPHCILATNTSTID---LNIVGEKTSSQDRIIGAHFFS-PAHV------MP 293 (563)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~~~--l~~~~~~~~ii~sntS~l~---i~~la~~~~~~~r~ig~hf~~-P~~~------~~ 293 (563)
+||+||.+||...+++..++.. +.+.++++.......||+. ..+|++...+. +..|.+ |++. ..
T Consensus 91 ~sDvvitmv~~~~~v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~----~~~~vDAPVSGg~~~A~~G 166 (327)
T KOG0409|consen 91 DSDVVITMVPNPKDVKDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNK----GGRFVDAPVSGGVKGAEEG 166 (327)
T ss_pred hcCEEEEEcCChHhhHHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHHHHHhC----CCeEEeccccCCchhhhcC
Confidence 9999999999999988777764 3333444443312233333 33677665432 444444 4432 23
Q ss_pred eEEEEeCCCCCHHHHHHHHHHHHHhCCceEEecCc-ch---hhhHHHHHHH----HHHHHHHHHC-CCCHHHHHHHH-Hh
Q 008509 294 LLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNC-TG---FAVNRAFFPY----SQSARLLVSL-GVDVFRIDSAI-RS 363 (563)
Q Consensus 294 lvEiv~~~~t~~~~~~~~~~l~~~lGk~~v~~~d~-~G---fi~nRl~~~~----~~Ea~~l~~~-G~~~~~ID~a~-~~ 363 (563)
.+.++.+ .+++.++.+..+++.+||+.+.++.+ .| .+.|.++.+. +.|++.+.+. |+++..+-.++ .+
T Consensus 167 ~Ltimag--Gde~~~~~~~~~~~~mGk~~~~~G~~GnG~~~Kl~nnm~~g~~M~g~aEal~la~r~GLd~~~l~eiln~G 244 (327)
T KOG0409|consen 167 TLTIMAG--GDEALFEAASPVFKLMGKNVVFLGGVGNGQAAKLCNNMLLGSSMVGLAEALALADRLGLDAKKLLEILNTG 244 (327)
T ss_pred eEEEEec--CcHHHHHHHHHHHHHhcceEEEecccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcC
Confidence 4555555 69999999999999999999999642 23 5778876543 5688888865 99999988888 54
Q ss_pred cCC
Q 008509 364 FGL 366 (563)
Q Consensus 364 ~G~ 366 (563)
-.|
T Consensus 245 ~~~ 247 (327)
T KOG0409|consen 245 RCW 247 (327)
T ss_pred Ccc
Confidence 333
No 51
>PLN02688 pyrroline-5-carboxylate reductase
Probab=99.56 E-value=3.8e-13 Score=134.64 Aligned_cols=185 Identities=19% Similarity=0.130 Sum_probs=133.7
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCC----eEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCc-
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNI----YVVLK-EVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY- 221 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~----~V~l~-d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~- 221 (563)
+||+|||+|.||.+|+..|.++|+ +|+++ |+++++.+... +.| +..+++.
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~-----------~~g-------------~~~~~~~~ 56 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQ-----------SLG-------------VKTAASNT 56 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHH-----------HcC-------------CEEeCChH
Confidence 479999999999999999999998 89999 99988755421 222 2233444
Q ss_pred ccccCCCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhhhccCCCceeecccCCCCCCCCeEE-EEeC
Q 008509 222 SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLE-IVRT 300 (563)
Q Consensus 222 ~~l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS~l~i~~la~~~~~~~r~ig~hf~~P~~~~~lvE-iv~~ 300 (563)
+.+++||+||.|++ ++...+++.++.+.++++++|+|.+++++++.+.+..... +++..+|..|......+. ++.+
T Consensus 57 e~~~~aDvVil~v~--~~~~~~vl~~l~~~~~~~~~iIs~~~g~~~~~l~~~~~~~-~vvr~mP~~~~~~~~~~~~l~~~ 133 (266)
T PLN02688 57 EVVKSSDVIILAVK--PQVVKDVLTELRPLLSKDKLLVSVAAGITLADLQEWAGGR-RVVRVMPNTPCLVGEAASVMSLG 133 (266)
T ss_pred HHHhcCCEEEEEEC--cHHHHHHHHHHHhhcCCCCEEEEecCCCcHHHHHHHcCCC-CEEEECCCcHHHHhCceEEEEeC
Confidence 45789999999996 3456788888888888889888988999999998776543 788888877776555545 4467
Q ss_pred CCCCHHHHHHHHHHHHHhCCceEEecCc-----chh--hhHHHHHHHHHHHH--HHHHCCCCHHHHHHHH
Q 008509 301 ERTSAQVILDLMTVGKIIKKVPVVVGNC-----TGF--AVNRAFFPYSQSAR--LLVSLGVDVFRIDSAI 361 (563)
Q Consensus 301 ~~t~~~~~~~~~~l~~~lGk~~v~~~d~-----~Gf--i~nRl~~~~~~Ea~--~l~~~G~~~~~ID~a~ 361 (563)
..++++..+.++++++.+|+ ++++++. -+. ....+++ ++.+++ .....|+++++.-+++
T Consensus 134 ~~~~~~~~~~v~~l~~~~G~-~~~~~e~~~d~~~~~~g~g~a~~~-~~~~a~~ea~~~~Gl~~~~a~~~~ 201 (266)
T PLN02688 134 PAATADDRDLVATLFGAVGK-IWVVDEKLLDAVTGLSGSGPAYIF-LAIEALADGGVAAGLPRDVALSLA 201 (266)
T ss_pred CCCCHHHHHHHHHHHHhCCC-EEEeCHHHcchhHhhhcCHHHHHH-HHHHHHHHHHHHcCCCHHHHHHHH
Confidence 77899999999999999999 7776321 000 1111122 222222 1445689998887777
No 52
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=99.52 E-value=6.8e-13 Score=134.62 Aligned_cols=186 Identities=15% Similarity=0.121 Sum_probs=126.1
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCc-ccccC
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 226 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 226 (563)
++|+|||+|.||.+||..|+++|++|++||+++++++... +.| +..+++. +.+++
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~-----------~~g-------------~~~~~s~~~~~~~ 57 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALV-----------DKG-------------ATPAASPAQAAAG 57 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHH-----------HcC-------------CcccCCHHHHHhc
Confidence 5899999999999999999999999999999998876532 222 1123333 56789
Q ss_pred CCEEEEecCCChHHHHHHHH--HHHhhCCCCeEEEecCCCCCHH---HHhhhcc-CCCceeecccCCCC---CCCCeEEE
Q 008509 227 VDMVIEAVIESVPLKQKIFS--ELEKACPPHCILATNTSTIDLN---IVGEKTS-SQDRIIGAHFFSPA---HVMPLLEI 297 (563)
Q Consensus 227 aDlVieav~e~~~~k~~v~~--~l~~~~~~~~ii~sntS~l~i~---~la~~~~-~~~r~ig~hf~~P~---~~~~lvEi 297 (563)
||+||.|+|++..++..++. .+.+.+++++++++ +|+.++. ++++.+. +..+|+.......+ ....+.-+
T Consensus 58 aDvVi~~vp~~~~~~~vl~~~~~i~~~l~~g~lvid-~sT~~p~~~~~l~~~l~~~g~~~ldapV~g~~~~a~~g~l~~~ 136 (296)
T PRK15461 58 AEFVITMLPNGDLVRSVLFGENGVCEGLSRDALVID-MSTIHPLQTDKLIADMQAKGFSMMDVPVGRTSDNAITGTLLLL 136 (296)
T ss_pred CCEEEEecCCHHHHHHHHcCcccHhhcCCCCCEEEE-CCCCCHHHHHHHHHHHHHcCCcEEEccCCCCHHHHHhCcEEEE
Confidence 99999999998766655442 35566778887754 4555543 4544443 22233332221111 12334444
Q ss_pred EeCCCCCHHHHHHHHHHHHHhCCceEEecCc-ch---hhhHHHHH----HHHHHHHHHHHC-CCCHHHHHHHH
Q 008509 298 VRTERTSAQVILDLMTVGKIIKKVPVVVGNC-TG---FAVNRAFF----PYSQSARLLVSL-GVDVFRIDSAI 361 (563)
Q Consensus 298 v~~~~t~~~~~~~~~~l~~~lGk~~v~~~d~-~G---fi~nRl~~----~~~~Ea~~l~~~-G~~~~~ID~a~ 361 (563)
+.+ ++++++.++++++.+|+.++++++. .| .++|.++. ..+.|++.+.+. |++++.+=.++
T Consensus 137 ~gg---~~~~~~~~~p~l~~~g~~~~~~g~~G~g~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~Gld~~~~~~~l 206 (296)
T PRK15461 137 AGG---TAEQVERATPILMAMGNELINAGGPGMGIRVKLINNYMSIALNALSAEAAVLCEALGLSFDVALKVM 206 (296)
T ss_pred ECC---CHHHHHHHHHHHHHHcCCeEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 444 8899999999999999999998752 22 35555443 346788888765 89988876666
No 53
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=99.50 E-value=8.2e-14 Score=128.70 Aligned_cols=146 Identities=18% Similarity=0.159 Sum_probs=102.9
Q ss_pred ceeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCc-cccc
Q 008509 147 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 225 (563)
Q Consensus 147 ~~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 225 (563)
|++|+|||+|.||++||.+|+++|++|++||+++++.++.. +.| .....+. +.++
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~-----------~~g-------------~~~~~s~~e~~~ 56 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALA-----------EAG-------------AEVADSPAEAAE 56 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHH-----------HTT-------------EEEESSHHHHHH
T ss_pred CCEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhH-----------Hhh-------------hhhhhhhhhHhh
Confidence 57999999999999999999999999999999998877643 222 4455665 5678
Q ss_pred CCCEEEEecCCChHHHHHHHHH--HHhhCCCCeEEEecCCCCCHH---HHhhhccCCCceeecccCC-CC-------CCC
Q 008509 226 DVDMVIEAVIESVPLKQKIFSE--LEKACPPHCILATNTSTIDLN---IVGEKTSSQDRIIGAHFFS-PA-------HVM 292 (563)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~~~--l~~~~~~~~ii~sntS~l~i~---~la~~~~~~~r~ig~hf~~-P~-------~~~ 292 (563)
+||+||.|+|.+.++ ++++.. +.+.+.++++|+.. |+.+++ ++++.+.. .|.||.+ |+ ...
T Consensus 57 ~~dvvi~~v~~~~~v-~~v~~~~~i~~~l~~g~iiid~-sT~~p~~~~~~~~~~~~----~g~~~vdapV~Gg~~~a~~g 130 (163)
T PF03446_consen 57 QADVVILCVPDDDAV-EAVLFGENILAGLRPGKIIIDM-STISPETSRELAERLAA----KGVRYVDAPVSGGPPGAEEG 130 (163)
T ss_dssp HBSEEEE-SSSHHHH-HHHHHCTTHGGGS-TTEEEEE--SS--HHHHHHHHHHHHH----TTEEEEEEEEESHHHHHHHT
T ss_pred cccceEeecccchhh-hhhhhhhHHhhccccceEEEec-CCcchhhhhhhhhhhhh----ccceeeeeeeeccccccccc
Confidence 999999999987665 466666 88888999988754 344443 44444431 2456654 33 235
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHhCCceEEe
Q 008509 293 PLLEIVRTERTSAQVILDLMTVGKIIKKVPVVV 325 (563)
Q Consensus 293 ~lvEiv~~~~t~~~~~~~~~~l~~~lGk~~v~~ 325 (563)
.+.-++.| ++++++.++++++.+++.++++
T Consensus 131 ~l~~~~gG---~~~~~~~~~~~l~~~~~~v~~~ 160 (163)
T PF03446_consen 131 TLTIMVGG---DEEAFERVRPLLEAMGKNVYHY 160 (163)
T ss_dssp TEEEEEES----HHHHHHHHHHHHHHEEEEEEE
T ss_pred ceEEEccC---CHHHHHHHHHHHHHHhCCceee
Confidence 66667776 7899999999999999988744
No 54
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=99.48 E-value=8.5e-13 Score=133.55 Aligned_cols=181 Identities=19% Similarity=0.179 Sum_probs=129.2
Q ss_pred EEcCCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCc-ccccCCCEE
Q 008509 152 VIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKDVDMV 230 (563)
Q Consensus 152 ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~aDlV 230 (563)
|||+|.||.+||..|+++|++|++||+++++++... +.| +..+++. +.+++||+|
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~-----------~~g-------------~~~~~s~~~~~~~advV 56 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAV-----------AAG-------------AQAAASPAEAAEGADRV 56 (288)
T ss_pred CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHH-----------HcC-------------CeecCCHHHHHhcCCEE
Confidence 689999999999999999999999999998866532 222 2233344 567899999
Q ss_pred EEecCCChHHHHHHH---HHHHhhCCCCeEEEecCCCCCHH---HHhhhccCCCceeecccCC-CCC-------CCCeEE
Q 008509 231 IEAVIESVPLKQKIF---SELEKACPPHCILATNTSTIDLN---IVGEKTSSQDRIIGAHFFS-PAH-------VMPLLE 296 (563)
Q Consensus 231 ieav~e~~~~k~~v~---~~l~~~~~~~~ii~sntS~l~i~---~la~~~~~~~r~ig~hf~~-P~~-------~~~lvE 296 (563)
|.|||.+.+++ .++ .++.+.+++++++++. |+++++ ++++.+.. .|.+|.+ |+. ...+.-
T Consensus 57 il~vp~~~~~~-~v~~g~~~l~~~~~~g~~vid~-st~~p~~~~~~~~~~~~----~g~~~vdaPv~Gg~~~a~~g~l~~ 130 (288)
T TIGR01692 57 ITMLPAGQHVI-SVYSGDEGILPKVAKGSLLIDC-STIDPDSARKLAELAAA----HGAVFMDAPVSGGVGGARAGTLTF 130 (288)
T ss_pred EEeCCChHHHH-HHHcCcchHhhcCCCCCEEEEC-CCCCHHHHHHHHHHHHH----cCCcEEECCCCCCHHHHhhCcEEE
Confidence 99999866554 444 5677778888887654 466554 34443321 2555554 332 234454
Q ss_pred EEeCCCCCHHHHHHHHHHHHHhCCceEEecC-cchh---hhHHHHHH----HHHHHHHHHHC-CCCHHHHHHHH-HhcC
Q 008509 297 IVRTERTSAQVILDLMTVGKIIKKVPVVVGN-CTGF---AVNRAFFP----YSQSARLLVSL-GVDVFRIDSAI-RSFG 365 (563)
Q Consensus 297 iv~~~~t~~~~~~~~~~l~~~lGk~~v~~~d-~~Gf---i~nRl~~~----~~~Ea~~l~~~-G~~~~~ID~a~-~~~G 365 (563)
++.+ +++.++.+++++..+|+.++++++ ..|. ++|+++.. .++|++.+.+. |++++++-+++ .+.|
T Consensus 131 ~~gg---~~~~~~~~~~~l~~~g~~~~~~g~~g~g~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~~~~~~~ 206 (288)
T TIGR01692 131 MVGG---VAEEFAAAEPVLGPMGRNIVHCGDHGAGQAAKICNNMLLGISMIGTAEAMALGEKLGLDPKVLFEIANTSSG 206 (288)
T ss_pred EECC---CHHHHHHHHHHHHHhcCCeEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCc
Confidence 5554 678899999999999999999975 4453 56666533 36799988865 89999999998 5555
No 55
>PRK06545 prephenate dehydrogenase; Validated
Probab=99.48 E-value=7.2e-13 Score=138.04 Aligned_cols=167 Identities=18% Similarity=0.160 Sum_probs=121.2
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCc-ccccC
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 226 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 226 (563)
++|+|||+|.||++||..|.++|++|.+|+++++..+... ....+..+ ..++++ +.+++
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~---------a~~~~~~~-----------~~~~~~~~~~~~ 60 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLAR---------ALGFGVID-----------ELAADLQRAAAE 60 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHH---------HhcCCCCc-----------ccccCHHHHhcC
Confidence 4799999999999999999999999999999887644321 11122111 122343 45789
Q ss_pred CCEEEEecCCChHHHHHHHHHHHh-hCCCCeEEEecCCCC--CHHHHhhhccCCCceeecccCCCCC------------C
Q 008509 227 VDMVIEAVIESVPLKQKIFSELEK-ACPPHCILATNTSTI--DLNIVGEKTSSQDRIIGAHFFSPAH------------V 291 (563)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~-~~~~~~ii~sntS~l--~i~~la~~~~~~~r~ig~hf~~P~~------------~ 291 (563)
||+||.|+|.+ ...+++.++.+ .++++++|++.+|.- .+..+........+|+|.||+...+ .
T Consensus 61 aDlVilavP~~--~~~~vl~~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~~~~~~~ig~HPMaG~e~sG~~aa~~~lf~ 138 (359)
T PRK06545 61 ADLIVLAVPVD--ATAALLAELADLELKPGVIVTDVGSVKGAILAEAEALLGDLIRFVGGHPMAGSHKSGVAAARADLFE 138 (359)
T ss_pred CCEEEEeCCHH--HHHHHHHHHhhcCCCCCcEEEeCccccHHHHHHHHHhcCCCCeEEeeCCcCcCchhhHHHhcHHHHC
Confidence 99999999975 46788999987 478888887666542 3344555445677999999875431 2
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHhCCceEEec-CcchhhhHHH
Q 008509 292 MPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVG-NCTGFAVNRA 336 (563)
Q Consensus 292 ~~lvEiv~~~~t~~~~~~~~~~l~~~lGk~~v~~~-d~~Gfi~nRl 336 (563)
....-+++++.++++.++.+.++++.+|..++.+. +....++..+
T Consensus 139 g~~~il~~~~~~~~~~~~~v~~l~~~lGa~~v~~~~~~HD~~~A~v 184 (359)
T PRK06545 139 NAPWVLTPDDHTDPDAVAELKDLLSGTGAKFVVLDAEEHDRAVALV 184 (359)
T ss_pred CCcEEEecCCCCCHHHHHHHHHHHHHcCCEEEECCHHHHhHHHhHh
Confidence 33455778888999999999999999999998884 3445555554
No 56
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.46 E-value=4.9e-12 Score=126.66 Aligned_cols=151 Identities=19% Similarity=0.207 Sum_probs=116.9
Q ss_pred ceeEEEEcCCcchHHHHHHHHhCC---CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCc-c
Q 008509 147 VRKVAVIGGGLMGSGIATAHILNN---IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S 222 (563)
Q Consensus 147 ~~kv~ViGaG~mG~~iA~~la~~G---~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 222 (563)
+++|+|||+|.||..++..+.++| ++|.++|++++..+...+. + | +..+.+. +
T Consensus 2 mm~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~----~------g-------------~~~~~~~~~ 58 (267)
T PRK11880 2 MKKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEE----Y------G-------------VRAATDNQE 58 (267)
T ss_pred CCEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHh----c------C-------------CeecCChHH
Confidence 468999999999999999999999 7899999998876553210 0 1 1223343 4
Q ss_pred cccCCCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhhhccCCCceeecccCCCCCCCCeEE-EEeCC
Q 008509 223 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLE-IVRTE 301 (563)
Q Consensus 223 ~l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS~l~i~~la~~~~~~~r~ig~hf~~P~~~~~lvE-iv~~~ 301 (563)
.+.+||+||.|+|.. .-+++++++.+.+ +++|+|.+++++...+...++...+++.+||..|......+. ++++.
T Consensus 59 ~~~~advVil~v~~~--~~~~v~~~l~~~~--~~~vvs~~~gi~~~~l~~~~~~~~~iv~~~P~~p~~~~~~~~~i~~~~ 134 (267)
T PRK11880 59 AAQEADVVVLAVKPQ--VMEEVLSELKGQL--DKLVVSIAAGVTLARLERLLGADLPVVRAMPNTPALVGAGMTALTANA 134 (267)
T ss_pred HHhcCCEEEEEcCHH--HHHHHHHHHHhhc--CCEEEEecCCCCHHHHHHhcCCCCcEEEecCCchHHHcCceEEEecCC
Confidence 568999999999754 3567788887766 467788888999999988876667899999988876555454 55777
Q ss_pred CCCHHHHHHHHHHHHHhCCceEE
Q 008509 302 RTSAQVILDLMTVGKIIKKVPVV 324 (563)
Q Consensus 302 ~t~~~~~~~~~~l~~~lGk~~v~ 324 (563)
.++++..+.+..+++.+|..+.+
T Consensus 135 ~~~~~~~~~v~~l~~~lG~~~~~ 157 (267)
T PRK11880 135 LVSAEDRELVENLLSAFGKVVWV 157 (267)
T ss_pred CCCHHHHHHHHHHHHhCCeEEEE
Confidence 78999999999999999974444
No 57
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=99.45 E-value=1.7e-14 Score=153.01 Aligned_cols=159 Identities=15% Similarity=0.120 Sum_probs=119.8
Q ss_pred eEEEEcCCcchHHHHH--HH----HhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCc-
Q 008509 149 KVAVIGGGLMGSGIAT--AH----ILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY- 221 (563)
Q Consensus 149 kv~ViGaG~mG~~iA~--~l----a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~- 221 (563)
||+|||+|.||.+++. .+ +.+|++|++||++++.++.....+.+.+.. .. ...++..++|+
T Consensus 2 KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~----~~--------~~~~I~~ttD~~ 69 (423)
T cd05297 2 KIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEE----LG--------APLKIEATTDRR 69 (423)
T ss_pred eEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHh----cC--------CCeEEEEeCCHH
Confidence 7999999999998666 23 456889999999999988766555444321 11 11367788886
Q ss_pred ccccCCCEEEEecC----------CChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhhhccC--CCceeecccCCCC
Q 008509 222 SEFKDVDMVIEAVI----------ESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSS--QDRIIGAHFFSPA 289 (563)
Q Consensus 222 ~~l~~aDlVieav~----------e~~~~k~~v~~~l~~~~~~~~ii~sntS~l~i~~la~~~~~--~~r~ig~hf~~P~ 289 (563)
+++++||+||++++ |+..+|..+++++.+.+.+++++.+++|+..+.+++..+.+ | +++.+||+||+
T Consensus 70 eal~~AD~Vi~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~p-~a~~i~~tNPv 148 (423)
T cd05297 70 EALDGADFVINTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELCP-DAWLLNYANPM 148 (423)
T ss_pred HHhcCCCEEEEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHCC-CCEEEEcCChH
Confidence 68999999999998 45889999999999999999999999999999999988864 6 89999999999
Q ss_pred CCC-----CeEEEEeCCCCCHHHHHHHHHHHHHhCCc
Q 008509 290 HVM-----PLLEIVRTERTSAQVILDLMTVGKIIKKV 321 (563)
Q Consensus 290 ~~~-----~lvEiv~~~~t~~~~~~~~~~l~~~lGk~ 321 (563)
..+ +..+ ++.-.+...+......+.+.+|+.
T Consensus 149 ~i~t~~~~k~~~-~rviG~c~~~~~~~~~~a~~l~~~ 184 (423)
T cd05297 149 AELTWALNRYTP-IKTVGLCHGVQGTAEQLAKLLGEP 184 (423)
T ss_pred HHHHHHHHHhCC-CCEEEECCcHHHHHHHHHHHhCCC
Confidence 654 3322 111112222555566666777764
No 58
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.44 E-value=4.4e-12 Score=127.76 Aligned_cols=188 Identities=14% Similarity=0.145 Sum_probs=131.5
Q ss_pred ceeEEEEcCCcchHHHHHHHHhCC----CeEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCc
Q 008509 147 VRKVAVIGGGLMGSGIATAHILNN----IYVVLKEVNSE-YLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY 221 (563)
Q Consensus 147 ~~kv~ViGaG~mG~~iA~~la~~G----~~V~l~d~~~~-~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 221 (563)
.+||+|||+|.||.+|+..|+++| ++|+++|++++ .++.... ..| +..+.+.
T Consensus 3 ~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~----------~~g-------------~~~~~~~ 59 (279)
T PRK07679 3 IQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQ----------KYG-------------VKGTHNK 59 (279)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHH----------hcC-------------ceEeCCH
Confidence 468999999999999999999998 79999999764 3333210 011 2233444
Q ss_pred -ccccCCCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhhhccCCCceeecccCCCCCCC-CeEEEEe
Q 008509 222 -SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVM-PLLEIVR 299 (563)
Q Consensus 222 -~~l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS~l~i~~la~~~~~~~r~ig~hf~~P~~~~-~lvEiv~ 299 (563)
+.+.+||+||.||+.+. -.+++.++.+.+.++++|+|..++++++.+.+......++++.|+..|.... .+.-+++
T Consensus 60 ~e~~~~aDvVilav~p~~--~~~vl~~l~~~~~~~~liIs~~aGi~~~~l~~~~~~~~~v~r~mPn~~~~~~~~~t~~~~ 137 (279)
T PRK07679 60 KELLTDANILFLAMKPKD--VAEALIPFKEYIHNNQLIISLLAGVSTHSIRNLLQKDVPIIRAMPNTSAAILKSATAISP 137 (279)
T ss_pred HHHHhcCCEEEEEeCHHH--HHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCCCCeEEEECCCHHHHHhcccEEEee
Confidence 45689999999998653 4466788888888889999988999999998877655579999996665443 3444557
Q ss_pred CCCCCHHHHHHHHHHHHHhCCceEEecCc--c---hhh--hHHHHHHHHHHHHH--HHHCCCCHHHHHHHH
Q 008509 300 TERTSAQVILDLMTVGKIIKKVPVVVGNC--T---GFA--VNRAFFPYSQSARL--LVSLGVDVFRIDSAI 361 (563)
Q Consensus 300 ~~~t~~~~~~~~~~l~~~lGk~~v~~~d~--~---Gfi--~nRl~~~~~~Ea~~--l~~~G~~~~~ID~a~ 361 (563)
++..+++.++.+++++..+|+.. ++.+. . |.. .... ..++.|++. ....|+++++.-+++
T Consensus 138 ~~~~~~~~~~~v~~l~~~~G~~~-~v~e~~~~~~~a~~Gsgpa~-~~~~~eal~e~~~~~Gl~~~~a~~~~ 206 (279)
T PRK07679 138 SKHATAEHIQTAKALFETIGLVS-VVEEEDMHAVTALSGSGPAY-IYYVVEAMEKAAKKIGLKEDVAKSLI 206 (279)
T ss_pred CCCCCHHHHHHHHHHHHhCCcEE-EeCHHHhhhHHHhhcCHHHH-HHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 77788999999999999999854 43211 0 000 0011 223334332 446688888887777
No 59
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=99.44 E-value=4.6e-12 Score=128.05 Aligned_cols=183 Identities=19% Similarity=0.179 Sum_probs=123.0
Q ss_pred eEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCc-ccccCC
Q 008509 149 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKDV 227 (563)
Q Consensus 149 kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~a 227 (563)
||+|||+|.||.+||..|.++|++|++||+++. .+.. .+.|. ....+. +.+++|
T Consensus 2 ~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~-~~~~-----------~~~g~-------------~~~~s~~~~~~~a 56 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINLARAGHQLHVTTIGPV-ADEL-----------LSLGA-------------VSVETARQVTEAS 56 (292)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHh-HHHH-----------HHcCC-------------eecCCHHHHHhcC
Confidence 699999999999999999999999999999864 2221 12231 122233 457899
Q ss_pred CEEEEecCCChHHHHHHHHH--HHhhCCCCeEEEecCCCCCHH---HHhhhcc-CCCceeecccCCC-C---CCCCeEEE
Q 008509 228 DMVIEAVIESVPLKQKIFSE--LEKACPPHCILATNTSTIDLN---IVGEKTS-SQDRIIGAHFFSP-A---HVMPLLEI 297 (563)
Q Consensus 228 DlVieav~e~~~~k~~v~~~--l~~~~~~~~ii~sntS~l~i~---~la~~~~-~~~r~ig~hf~~P-~---~~~~lvEi 297 (563)
|+||.|||.+.+++..++.. +...+.++.+++.. ||.++. ++++.+. +..+|+.. |+.. + ....|.-+
T Consensus 57 dvVi~~v~~~~~v~~v~~~~~g~~~~~~~g~ivvd~-sT~~p~~~~~~~~~~~~~G~~~vda-PVsGg~~~a~~g~l~~~ 134 (292)
T PRK15059 57 DIIFIMVPDTPQVEEVLFGENGCTKASLKGKTIVDM-SSISPIETKRFARQVNELGGDYLDA-PVSGGEIGAREGTLSIM 134 (292)
T ss_pred CEEEEeCCChHHHHHHHcCCcchhccCCCCCEEEEC-CCCCHHHHHHHHHHHHHcCCCEEEe-cCCCCHHHHhcCcEEEE
Confidence 99999999887766555432 55566788877654 444444 4444443 33344442 3221 1 22344444
Q ss_pred EeCCCCCHHHHHHHHHHHHHhCCceEEecCc-ch---hhhHHHHHH----HHHHHHHHHHC-CCCHHHHHHHH
Q 008509 298 VRTERTSAQVILDLMTVGKIIKKVPVVVGNC-TG---FAVNRAFFP----YSQSARLLVSL-GVDVFRIDSAI 361 (563)
Q Consensus 298 v~~~~t~~~~~~~~~~l~~~lGk~~v~~~d~-~G---fi~nRl~~~----~~~Ea~~l~~~-G~~~~~ID~a~ 361 (563)
+.+ +++.++.++++++.+|+.++++++. .| .++|.++.. .+.|++.+.+. |++++.+=.++
T Consensus 135 ~gG---~~~~~~~~~p~l~~~g~~~~~~G~~G~g~~~Kl~~N~l~~~~~~a~~Ea~~la~~~Gld~~~~~~~l 204 (292)
T PRK15059 135 VGG---DEAVFERVKPLFELLGKNITLVGGNGDGQTCKVANQIIVALNIEAVSEALLFASKAGADPVRVRQAL 204 (292)
T ss_pred EcC---CHHHHHHHHHHHHHHcCCcEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 444 7899999999999999999999763 23 355555533 36788887755 89998876676
No 60
>PRK08507 prephenate dehydrogenase; Validated
Probab=99.43 E-value=1.5e-11 Score=123.58 Aligned_cols=151 Identities=19% Similarity=0.191 Sum_probs=109.8
Q ss_pred eEEEEcCCcchHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCcccccC
Q 008509 149 KVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 226 (563)
Q Consensus 149 kv~ViGaG~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 226 (563)
+|+|||+|.||.++|..|.++|+ +|++||++++.++.+. +.|.. ....+.+.+.+
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~-----------~~g~~------------~~~~~~~~~~~ 58 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKAL-----------ELGLV------------DEIVSFEELKK 58 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHH-----------HCCCC------------cccCCHHHHhc
Confidence 79999999999999999999996 7999999998766532 22321 11223444556
Q ss_pred CCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCCCCC-HHHHhhhccCCCceeecccCC------CCC------CCC
Q 008509 227 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID-LNIVGEKTSSQDRIIGAHFFS------PAH------VMP 293 (563)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS~l~-i~~la~~~~~~~r~ig~hf~~------P~~------~~~ 293 (563)
||+||.|+|.+. ..+++.++.+ ++++++|++.+|+.. +.+..... .+.+|++.||+. |.. ...
T Consensus 59 aD~Vilavp~~~--~~~~~~~l~~-l~~~~iv~d~gs~k~~i~~~~~~~-~~~~~v~~hPmaG~e~~Gp~~a~~~l~~g~ 134 (275)
T PRK08507 59 CDVIFLAIPVDA--IIEILPKLLD-IKENTTIIDLGSTKAKIIESVPKH-IRKNFIAAHPMAGTENSGPKAAIKGLYEGK 134 (275)
T ss_pred CCEEEEeCcHHH--HHHHHHHHhc-cCCCCEEEECccchHHHHHHHHHh-cCCCEEecCCcCcCchhhHHhccHHHhCCC
Confidence 999999999764 4467788888 888998887555421 22211111 235799999974 322 345
Q ss_pred eEEEEeCCCCCHHHHHHHHHHHHHhCCceEEec
Q 008509 294 LLEIVRTERTSAQVILDLMTVGKIIKKVPVVVG 326 (563)
Q Consensus 294 lvEiv~~~~t~~~~~~~~~~l~~~lGk~~v~~~ 326 (563)
.+.+++.+.++++.++.+..+++.+|..++.+.
T Consensus 135 ~~il~~~~~~~~~~~~~v~~l~~~~G~~~~~~~ 167 (275)
T PRK08507 135 VVVLCDVEKSGEKHQERAKEIFSGLGMRIVYMD 167 (275)
T ss_pred eEEEecCCCCCHHHHHHHHHHHHHhCCEEEEeC
Confidence 667778878899999999999999999999885
No 61
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=99.42 E-value=5.1e-12 Score=134.29 Aligned_cols=198 Identities=18% Similarity=0.184 Sum_probs=129.4
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhh------hcCeeeecCc
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNA------LKMLKGVLDY 221 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~------~~~i~~~~~~ 221 (563)
++|+|||+|.||..+|..|+++|++|++||++++.++...+.. -.+.+...+.. ..+++.++++
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~----------~~~~e~~l~~~~~~~~~~g~l~~~~~~ 70 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGK----------SPIYEPGLDELLAKALAAGRLRATTDY 70 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCC----------CCCCCCCHHHHHHHhhhcCCeEEECCH
Confidence 3799999999999999999999999999999999877643210 00000001110 1346667777
Q ss_pred c-cccCCCEEEEecCCChH--------HHHHHHHHHHhhCCCCeEEEecCCCCCHH---HHhh-hccC-------CCcee
Q 008509 222 S-EFKDVDMVIEAVIESVP--------LKQKIFSELEKACPPHCILATNTSTIDLN---IVGE-KTSS-------QDRII 281 (563)
Q Consensus 222 ~-~l~~aDlVieav~e~~~--------~k~~v~~~l~~~~~~~~ii~sntS~l~i~---~la~-~~~~-------~~r~i 281 (563)
+ .+++||+||.|||.... ....+...+.+.++++++++. +||+++. ++.. ...+ .+-.+
T Consensus 71 ~~~~~~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~-~STv~pgt~~~l~~~~~~~~~g~~~~~d~~v 149 (411)
T TIGR03026 71 EDAIRDADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVL-ESTVPPGTTEEVVKPILERASGLKLGEDFYL 149 (411)
T ss_pred HHHHhhCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEE-eCcCCCCchHHHHHHHHHhhcCCCCCCCceE
Confidence 4 68999999999997643 345666788888888887764 4555433 3332 2111 01112
Q ss_pred ecccCCCCCCC--Ce-------EEEEeCCCCCHHHHHHHHHHHHHhC-CceEEecCcc-h---hhhHHHH----HHHHHH
Q 008509 282 GAHFFSPAHVM--PL-------LEIVRTERTSAQVILDLMTVGKIIK-KVPVVVGNCT-G---FAVNRAF----FPYSQS 343 (563)
Q Consensus 282 g~hf~~P~~~~--~l-------vEiv~~~~t~~~~~~~~~~l~~~lG-k~~v~~~d~~-G---fi~nRl~----~~~~~E 343 (563)
.. +|.... .+ --++.+ .+++..+.+++++..++ +.++++.+.. + .+++..+ .+++||
T Consensus 150 ~~---~Pe~~~~G~~~~~~~~~~~iv~G--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE 224 (411)
T TIGR03026 150 AY---NPEFLREGNAVHDLLNPDRIVGG--ETEEAGEAVAELYAPIIEDGPVLVTSIETAEMIKLAENTFRAVKIAFANE 224 (411)
T ss_pred EE---CCCcCCCCChhhhhcCCCEEEEe--CCHHHHHHHHHHHHHhccCCCEEcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 233211 11 124444 48899999999999998 5777775421 2 3444444 467899
Q ss_pred HHHHHHC-CCCHHHHHHHH
Q 008509 344 ARLLVSL-GVDVFRIDSAI 361 (563)
Q Consensus 344 a~~l~~~-G~~~~~ID~a~ 361 (563)
+..+.+. |+++.++-.++
T Consensus 225 ~~~la~~~GiD~~~v~~~~ 243 (411)
T TIGR03026 225 LARICEALGIDVYEVIEAA 243 (411)
T ss_pred HHHHHHHhCCCHHHHHHHh
Confidence 9888865 99999998887
No 62
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=99.42 E-value=8.5e-12 Score=133.27 Aligned_cols=190 Identities=12% Similarity=0.148 Sum_probs=128.1
Q ss_pred cceeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCcc---
Q 008509 146 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS--- 222 (563)
Q Consensus 146 ~~~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~--- 222 (563)
.+.+|+|||+|.||.+||.+|+++|++|++|||++++.+...+.. ...|.. .+....+.+
T Consensus 5 ~~~~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~-------~~~Ga~----------~~~~a~s~~e~v 67 (493)
T PLN02350 5 ALSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERA-------KKEGNL----------PLYGFKDPEDFV 67 (493)
T ss_pred CCCCEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhh-------hhcCCc----------ccccCCCHHHHH
Confidence 456899999999999999999999999999999999877643210 001210 112233332
Q ss_pred -cccCCCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCCCCCH--HHHhhhccCCCceeecccCC-CCC-------C
Q 008509 223 -EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKTSSQDRIIGAHFFS-PAH-------V 291 (563)
Q Consensus 223 -~l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS~l~i--~~la~~~~~~~r~ig~hf~~-P~~-------~ 291 (563)
.++.+|+||.|||....+. +++..+.+.+.++.|+++.+++.+- .++++.+.. .|.||+. |+. .
T Consensus 68 ~~l~~~dvIi~~v~~~~aV~-~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~----~Gi~fldapVSGG~~gA~~ 142 (493)
T PLN02350 68 LSIQKPRSVIILVKAGAPVD-QTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAE----KGLLYLGMGVSGGEEGARN 142 (493)
T ss_pred hcCCCCCEEEEECCCcHHHH-HHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHH----cCCeEEeCCCcCCHHHhcC
Confidence 3345999999999887664 5567888888889888765444332 244444431 1555554 332 3
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHhCCc------eEEecC-cch---hhhHHHH-H---HHHHHHHHHHHC--CCCHH
Q 008509 292 MPLLEIVRTERTSAQVILDLMTVGKIIKKV------PVVVGN-CTG---FAVNRAF-F---PYSQSARLLVSL--GVDVF 355 (563)
Q Consensus 292 ~~lvEiv~~~~t~~~~~~~~~~l~~~lGk~------~v~~~d-~~G---fi~nRl~-~---~~~~Ea~~l~~~--G~~~~ 355 (563)
.+ . ++.+ .++++++.++++++.++.. +.++++ ..| .++|+.+ . ..+.|++.+++. |++++
T Consensus 143 G~-~-im~G--G~~~a~~~v~pvL~~ia~k~~~~~~v~~vG~~GaG~~vKlv~N~i~~~~m~~iaEA~~l~~~~~Gld~~ 218 (493)
T PLN02350 143 GP-S-LMPG--GSFEAYKNIEDILEKVAAQVDDGPCVTYIGPGGAGNFVKMVHNGIEYGDMQLISEAYDVLKSVGGLSNE 218 (493)
T ss_pred CC-e-EEec--CCHHHHHHHHHHHHHHhhhcCCCCcEEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHH
Confidence 44 3 4444 3889999999999999853 777875 223 2444443 3 346799988865 89999
Q ss_pred HHHHHH
Q 008509 356 RIDSAI 361 (563)
Q Consensus 356 ~ID~a~ 361 (563)
++-.++
T Consensus 219 ~l~~vf 224 (493)
T PLN02350 219 ELAEVF 224 (493)
T ss_pred HHHHHH
Confidence 998885
No 63
>PRK08655 prephenate dehydrogenase; Provisional
Probab=99.42 E-value=1e-11 Score=132.31 Aligned_cols=154 Identities=18% Similarity=0.133 Sum_probs=119.4
Q ss_pred eeEEEEc-CCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCc-cccc
Q 008509 148 RKVAVIG-GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 225 (563)
Q Consensus 148 ~kv~ViG-aG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 225 (563)
++|+||| +|.||.++|..|..+|++|+++|++++....... +.| +..+++. +.+.
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~----------~~g-------------v~~~~~~~e~~~ 57 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAK----------ELG-------------VEYANDNIDAAK 57 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHH----------HcC-------------CeeccCHHHHhc
Confidence 3799998 7999999999999999999999999876433210 112 2233444 4678
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCCC--CCHHHHhhhccCCCceeecccCCCC----CCCCeEEEEe
Q 008509 226 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTSSQDRIIGAHFFSPA----HVMPLLEIVR 299 (563)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS~--l~i~~la~~~~~~~r~ig~hf~~P~----~~~~lvEiv~ 299 (563)
+||+||.|+|.+ ....++.++.+.++++++|++.+|+ .++..+.+.++...+|++.||+..+ .....+.+++
T Consensus 58 ~aDvVIlavp~~--~~~~vl~~l~~~l~~~~iViDvsSvK~~~~~~l~~~~~~~~~~V~~HPmaGp~~~~~~g~~~il~p 135 (437)
T PRK08655 58 DADIVIISVPIN--VTEDVIKEVAPHVKEGSLLMDVTSVKERPVEAMEEYAPEGVEILPTHPMFGPRTPSLKGQVVILTP 135 (437)
T ss_pred cCCEEEEecCHH--HHHHHHHHHHhhCCCCCEEEEcccccHHHHHHHHHhcCCCCEEEEcCCCCCCCCcccCCCEEEEec
Confidence 999999999965 3458889999999999999888774 4555666665555689999987533 3456777888
Q ss_pred CCCCCHHHHHHHHHHHHHhCCceEEec
Q 008509 300 TERTSAQVILDLMTVGKIIKKVPVVVG 326 (563)
Q Consensus 300 ~~~t~~~~~~~~~~l~~~lGk~~v~~~ 326 (563)
++.++++.++.+.+++..+|..++.+.
T Consensus 136 ~~~~~~~~~~~v~~ll~~~G~~v~~~~ 162 (437)
T PRK08655 136 TEKRSNPWFDKVKNFLEKEGARVIVTS 162 (437)
T ss_pred CCCCCHHHHHHHHHHHHHcCCEEEECC
Confidence 888899999999999999999988874
No 64
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.41 E-value=1.7e-11 Score=122.42 Aligned_cols=152 Identities=16% Similarity=0.226 Sum_probs=122.3
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCC----eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCc-c
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNI----YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S 222 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~----~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 222 (563)
++|+|||+|.||.+|+..|.++|+ +|+++|+++++++...+ +.| +..+++. +
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~----------~~g-------------~~~~~~~~e 59 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASD----------KYG-------------ITITTNNNE 59 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHH----------hcC-------------cEEeCCcHH
Confidence 379999999999999999999885 69999999987665321 012 2233444 4
Q ss_pred cccCCCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhhhccCCCceeecccCCCCCCCCeEEEE-eCC
Q 008509 223 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIV-RTE 301 (563)
Q Consensus 223 ~l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS~l~i~~la~~~~~~~r~ig~hf~~P~~~~~lvEiv-~~~ 301 (563)
.+.+||+||.||+. ..-.+++.++.+.++++++|+|...+++++.|.+.+..+.+++-..|.-|......+..+ .++
T Consensus 60 ~~~~aDiIiLavkP--~~~~~vl~~l~~~~~~~~lvISi~AGi~i~~l~~~l~~~~~vvR~MPN~~~~vg~g~t~~~~~~ 137 (272)
T PRK12491 60 VANSADILILSIKP--DLYSSVINQIKDQIKNDVIVVTIAAGKSIKSTENEFDRKLKVIRVMPNTPVLVGEGMSALCFNE 137 (272)
T ss_pred HHhhCCEEEEEeCh--HHHHHHHHHHHHhhcCCcEEEEeCCCCcHHHHHHhcCCCCcEEEECCChHHHHcCceEEEEeCC
Confidence 57899999999984 456788899988888999999999999999999988766688998898888776666654 667
Q ss_pred CCCHHHHHHHHHHHHHhCCceEEe
Q 008509 302 RTSAQVILDLMTVGKIIKKVPVVV 325 (563)
Q Consensus 302 ~t~~~~~~~~~~l~~~lGk~~v~~ 325 (563)
..+++..+.+..+|..+|+.. ++
T Consensus 138 ~~~~~~~~~v~~lf~~~G~~~-~~ 160 (272)
T PRK12491 138 MVTEKDIKEVLNIFNIFGQTE-VV 160 (272)
T ss_pred CCCHHHHHHHHHHHHcCCCEE-EE
Confidence 778889999999999999874 44
No 65
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=99.41 E-value=2.7e-11 Score=124.38 Aligned_cols=205 Identities=15% Similarity=0.057 Sum_probs=134.1
Q ss_pred hHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCc-ccccCCCEEEEecCCC
Q 008509 159 GSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKDVDMVIEAVIES 237 (563)
Q Consensus 159 G~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~aDlVieav~e~ 237 (563)
|.+||..|+++|++|++||++++.++... .+.+...| +..+++. +.+++||+||.|+|..
T Consensus 32 G~~MA~~La~aG~~V~v~Dr~~~~l~~~~------~~~l~~~G-------------i~~asd~~eaa~~ADvVIlaVP~~ 92 (342)
T PRK12557 32 GSRMAIEFAEAGHDVVLAEPNRSILSEEL------WKKVEDAG-------------VKVVSDDAEAAKHGEIHILFTPFG 92 (342)
T ss_pred HHHHHHHHHhCCCeEEEEECCHHHhhHHH------HHHHHHCC-------------CEEeCCHHHHHhCCCEEEEECCCc
Confidence 89999999999999999999988654311 11122222 3444454 5678999999999976
Q ss_pred hHHHHHHHHHHHhhCCCCeEEEecCCCCCHHH----HhhhccCCCceeecccCCCCCC----CCeEEEEeCC------CC
Q 008509 238 VPLKQKIFSELEKACPPHCILATNTSTIDLNI----VGEKTSSQDRIIGAHFFSPAHV----MPLLEIVRTE------RT 303 (563)
Q Consensus 238 ~~~k~~v~~~l~~~~~~~~ii~sntS~l~i~~----la~~~~~~~r~ig~hf~~P~~~----~~lvEiv~~~------~t 303 (563)
. ..++++..+.+.++++++|++ +|+.+... +.+.+..+.+.+|.||++|... ..-++++.+. ..
T Consensus 93 ~-~v~~Vl~~L~~~L~~g~IVId-~ST~~~~~~s~~l~~~l~~~~~~~gi~~~~p~~v~Gae~g~l~Vm~gg~t~~~~~~ 170 (342)
T PRK12557 93 K-KTVEIAKNILPHLPENAVICN-TCTVSPVVLYYSLEGELRTKRKDVGISSMHPAAVPGTPQHGHYVIAGKTTNGTELA 170 (342)
T ss_pred H-HHHHHHHHHHhhCCCCCEEEE-ecCCCHHHHHHHHHHHhcccccccCeeecCCccccccccchheEEeCCCcccccCC
Confidence 4 456788889999999998774 55555543 3345554556778888876532 2234555543 23
Q ss_pred CHHHHHHHHHHHHHhCCceEEecCcchh---hhHHHHHHH----HHHHHHHHHC-CCCHHHHHHHH-HhcCCCccHHHHh
Q 008509 304 SAQVILDLMTVGKIIKKVPVVVGNCTGF---AVNRAFFPY----SQSARLLVSL-GVDVFRIDSAI-RSFGLPIGPFQLL 374 (563)
Q Consensus 304 ~~~~~~~~~~l~~~lGk~~v~~~d~~Gf---i~nRl~~~~----~~Ea~~l~~~-G~~~~~ID~a~-~~~G~p~GPf~~~ 374 (563)
+++.++.++++++.+|+.+++++...+. ..|.++.+. ..|++.+.+. |.+|.+.=+-+ ...- .|--.++
T Consensus 171 ~~e~~e~v~~LL~a~G~~v~~~~~g~~~~vk~~~n~l~av~~a~~aE~~~l~~~~~~~p~~~~~~~~~~~~--~~~a~l~ 248 (342)
T PRK12557 171 TEEQIEKCVELAESIGKEPYVVPADVVSAVADMGSLVTAVALSGVLDYYSVGTKIIKAPKEMIEKQILMTL--QTMASLV 248 (342)
T ss_pred CHHHHHHHHHHHHHcCCEEEEeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--HHHHHHH
Confidence 8899999999999999988887643232 234444433 4577777765 56665543333 2211 2444777
Q ss_pred hhhchHHHHHHH
Q 008509 375 DLAGYGVAAATS 386 (563)
Q Consensus 375 D~~Gld~~~~~~ 386 (563)
-..|+|-..+.+
T Consensus 249 ~~~~~~~~~~~~ 260 (342)
T PRK12557 249 ETSGVDGLLKAL 260 (342)
T ss_pred HHhChHHHHHhc
Confidence 777777666543
No 66
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=99.40 E-value=7.7e-12 Score=133.49 Aligned_cols=188 Identities=14% Similarity=0.119 Sum_probs=130.0
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCcc-cc--
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS-EF-- 224 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~l-- 224 (563)
.+|+|||+|.||++||..|+++|++|++||+++++++...+.. ...|. .+..+.+++ .+
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~-------~~~g~-----------~i~~~~s~~e~v~~ 63 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKA-------KEGNT-----------RVKGYHTLEELVNS 63 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhh-------hhcCC-----------cceecCCHHHHHhc
Confidence 4799999999999999999999999999999999877653210 01121 133445553 23
Q ss_pred -cCCCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHH--HHhhhccCCCceeecccCC-CCC-------CCC
Q 008509 225 -KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTSSQDRIIGAHFFS-PAH-------VMP 293 (563)
Q Consensus 225 -~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS~l~i~--~la~~~~~~~r~ig~hf~~-P~~-------~~~ 293 (563)
.++|+||.+|+....+ .+++.++.+.+.++.||++.+++.+.+ +..+.+.. .|.||+. |+. ..+
T Consensus 64 l~~~d~Iil~v~~~~~v-~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~----~Gi~fldapVSGG~~gA~~G~ 138 (470)
T PTZ00142 64 LKKPRKVILLIKAGEAV-DETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEE----KGILYLGMGVSGGEEGARYGP 138 (470)
T ss_pred CCCCCEEEEEeCChHHH-HHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHH----cCCeEEcCCCCCCHHHHhcCC
Confidence 3689999999876554 567788999999999998776665444 23333321 2666655 443 234
Q ss_pred eEEEEeCCCCCHHHHHHHHHHHHHhCCc------eEEecC-cchh---hh-HHHHH---HHHHHHHHHHH--CCCCHHHH
Q 008509 294 LLEIVRTERTSAQVILDLMTVGKIIKKV------PVVVGN-CTGF---AV-NRAFF---PYSQSARLLVS--LGVDVFRI 357 (563)
Q Consensus 294 lvEiv~~~~t~~~~~~~~~~l~~~lGk~------~v~~~d-~~Gf---i~-nRl~~---~~~~Ea~~l~~--~G~~~~~I 357 (563)
. ++.+ .++++++.++++++.++.. ..++++ ..|. ++ |-+.. ..+.|++.+++ .|++++++
T Consensus 139 -~-lm~G--G~~~a~~~~~piL~~ia~~~~~~~~~~~~G~~GaGh~vKmvhN~ie~~~m~~iaEa~~l~~~~~gl~~~~l 214 (470)
T PTZ00142 139 -S-LMPG--GNKEAYDHVKDILEKCSAKVGDSPCVTYVGPGSSGHYVKMVHNGIEYGDMQLISESYKLMKHILGMSNEEL 214 (470)
T ss_pred -E-EEEe--CCHHHHHHHHHHHHHHhhhcCCCCeEEEECCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCHHHH
Confidence 3 4444 3789999999999999977 567764 3342 33 44433 34679999986 58899999
Q ss_pred HHHHH
Q 008509 358 DSAIR 362 (563)
Q Consensus 358 D~a~~ 362 (563)
-.++.
T Consensus 215 ~~v~~ 219 (470)
T PTZ00142 215 SEVFN 219 (470)
T ss_pred HHHHH
Confidence 88874
No 67
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=99.39 E-value=1e-11 Score=126.80 Aligned_cols=157 Identities=17% Similarity=0.121 Sum_probs=114.6
Q ss_pred cceeEEEEcCCcchHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCc-c
Q 008509 146 GVRKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S 222 (563)
Q Consensus 146 ~~~kv~ViGaG~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 222 (563)
.+++|+|||+|.||.++|..|...|+ +|++||++++.++.+. +.|.. ...+.+. +
T Consensus 5 ~~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~-----------~~g~~-----------~~~~~~~~~ 62 (307)
T PRK07502 5 LFDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARAR-----------ELGLG-----------DRVTTSAAE 62 (307)
T ss_pred CCcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHH-----------hCCCC-----------ceecCCHHH
Confidence 35789999999999999999999995 8999999998766532 22311 1122333 4
Q ss_pred cccCCCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCCCC--CHHHHhhhccCCCceeecccCCCCCC---------
Q 008509 223 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI--DLNIVGEKTSSQDRIIGAHFFSPAHV--------- 291 (563)
Q Consensus 223 ~l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS~l--~i~~la~~~~~~~r~ig~hf~~P~~~--------- 291 (563)
.+++||+||.|+|.. ....++.++.+.++++++|++.+|.- .+..+........++++.|++.+.+.
T Consensus 63 ~~~~aDvViiavp~~--~~~~v~~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~~~~~~~v~~hPm~g~e~~G~~~a~~~ 140 (307)
T PRK07502 63 AVKGADLVILCVPVG--ASGAVAAEIAPHLKPGAIVTDVGSVKASVIAAMAPHLPEGVHFIPGHPLAGTEHSGPDAGFAE 140 (307)
T ss_pred HhcCCCEEEECCCHH--HHHHHHHHHHhhCCCCCEEEeCccchHHHHHHHHHhCCCCCeEEeCCCCCCCcccchhhcCHH
Confidence 678999999999975 34678888888889998887654431 23334444444558999999875432
Q ss_pred ---CCeEEEEeCCCCCHHHHHHHHHHHHHhCCceEEec
Q 008509 292 ---MPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVG 326 (563)
Q Consensus 292 ---~~lvEiv~~~~t~~~~~~~~~~l~~~lGk~~v~~~ 326 (563)
...+.+++...++++.++.+.+++..+|..++++.
T Consensus 141 l~~g~~~~l~~~~~~~~~~~~~~~~l~~~lG~~~~~~~ 178 (307)
T PRK07502 141 LFENRWCILTPPEGTDPAAVARLTAFWRALGARVEEMD 178 (307)
T ss_pred HHCCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEcC
Confidence 12345667777889999999999999999888874
No 68
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=99.38 E-value=9.3e-12 Score=123.80 Aligned_cols=158 Identities=16% Similarity=0.171 Sum_probs=117.1
Q ss_pred ceeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecC--cccc
Q 008509 147 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD--YSEF 224 (563)
Q Consensus 147 ~~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~--~~~l 224 (563)
.++|+|+|+|.||+++|..+..+|+.|.+++++.+..... ...+.|..+. .+.+ .+.+
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~---------~a~~lgv~d~-----------~~~~~~~~~~ 62 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLK---------AALELGVIDE-----------LTVAGLAEAA 62 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHH---------HHhhcCcccc-----------cccchhhhhc
Confidence 4689999999999999999999999987777765432221 1122332221 1122 3577
Q ss_pred cCCCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCCCC--CHHHHhhhccCCCceeecccCCCCC------CCCeEE
Q 008509 225 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI--DLNIVGEKTSSQDRIIGAHFFSPAH------VMPLLE 296 (563)
Q Consensus 225 ~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS~l--~i~~la~~~~~~~r~ig~hf~~P~~------~~~lvE 296 (563)
.+||+||.|||-. .--++++++.+.++++++|++.+|+- ++..+........+|+|.||+..++ ....+-
T Consensus 63 ~~aD~VivavPi~--~~~~~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~~~vg~HPM~G~~~~~~lf~~~~~v 140 (279)
T COG0287 63 AEADLVIVAVPIE--ATEEVLKELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDVRFVGGHPMFGPEADAGLFENAVVV 140 (279)
T ss_pred ccCCEEEEeccHH--HHHHHHHHhcccCCCCCEEEecccccHHHHHHHHHhccCCCeeEecCCCCCCcccccccCCCEEE
Confidence 8899999999955 45588999999999999999988874 3445555443322899999988662 245566
Q ss_pred EEeCCCCCHHHHHHHHHHHHHhCCceEEec
Q 008509 297 IVRTERTSAQVILDLMTVGKIIKKVPVVVG 326 (563)
Q Consensus 297 iv~~~~t~~~~~~~~~~l~~~lGk~~v~~~ 326 (563)
+++++.++.+.++.+.++++.+|-.++.+.
T Consensus 141 ltp~~~~~~~~~~~~~~~~~~~ga~~v~~~ 170 (279)
T COG0287 141 LTPSEGTEKEWVEEVKRLWEALGARLVEMD 170 (279)
T ss_pred EcCCCCCCHHHHHHHHHHHHHcCCEEEEcC
Confidence 778888889999999999999998888873
No 69
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=99.38 E-value=2.9e-11 Score=128.10 Aligned_cols=197 Identities=15% Similarity=0.172 Sum_probs=125.3
Q ss_pred ceeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHH--------HHHHHHHHHHcCCCCHHHHHhhhcCeeee
Q 008509 147 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT--------IEANVRGLVTRGKLTQDKANNALKMLKGV 218 (563)
Q Consensus 147 ~~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~--------i~~~~~~~~~~g~~~~~~~~~~~~~i~~~ 218 (563)
++||+|||+|.||.++|..|+++|++|++||+++++++..... +...+.+.++. .++..+
T Consensus 3 ~~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~------------g~l~~~ 70 (415)
T PRK11064 3 FETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEG------------GYLRAT 70 (415)
T ss_pred ccEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhc------------Cceeee
Confidence 5789999999999999999999999999999999988763211 11111111122 234444
Q ss_pred cCcccccCCCEEEEecCCC--------hHHHHHHHHHHHhhCCCCeEEEecCCCCCH---HHHhhhccC--CC-ce--e-
Q 008509 219 LDYSEFKDVDMVIEAVIES--------VPLKQKIFSELEKACPPHCILATNTSTIDL---NIVGEKTSS--QD-RI--I- 281 (563)
Q Consensus 219 ~~~~~l~~aDlVieav~e~--------~~~k~~v~~~l~~~~~~~~ii~sntS~l~i---~~la~~~~~--~~-r~--i- 281 (563)
++ +++||+||.|||.. +..-..+.+.+.++++++++++.. ||.++ .+++..+.. +. ++ -
T Consensus 71 ~~---~~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~-STv~pgtt~~~~~~l~~~~~~~~~~~~~ 146 (415)
T PRK11064 71 TT---PEPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILE-STSPVGATEQMAEWLAEARPDLTFPQQA 146 (415)
T ss_pred cc---cccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEe-CCCCCCHHHHHHHHHHHhccCCcccccc
Confidence 43 45899999999974 244456678899999999887643 33332 233332211 00 00 0
Q ss_pred --e--cc-cCCCC--CCCCeE-------EEEeCCCCCHHHHHHHHHHHHHhCCceEEecCc-ch---hhhHHHH----HH
Q 008509 282 --G--AH-FFSPA--HVMPLL-------EIVRTERTSAQVILDLMTVGKIIKKVPVVVGNC-TG---FAVNRAF----FP 339 (563)
Q Consensus 282 --g--~h-f~~P~--~~~~lv-------Eiv~~~~t~~~~~~~~~~l~~~lGk~~v~~~d~-~G---fi~nRl~----~~ 339 (563)
+ .| -++|- ..+..+ -++.+ .+++..+.+.++++.+++.++++.+. .+ .+++..+ .+
T Consensus 147 g~~~~f~v~~~PE~~~~G~~~~~~~~~~~vvgG--~~~~~~~~~~~ly~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia 224 (415)
T PRK11064 147 GEQADINIAYCPERVLPGQVMVELIKNDRVIGG--MTPVCSARASELYKIFLEGECVVTNSRTAEMCKLTENSFRDVNIA 224 (415)
T ss_pred cCCCCeEEEECCCccCCCChhhhhcCCCEEEEe--CCHHHHHHHHHHHHHhcCCCeeeCCHHHHHHHHHHHHHHHHHHHH
Confidence 0 01 13442 111111 34444 47899999999999999887777542 12 3444443 35
Q ss_pred HHHHHHHHHHC-CCCHHHHHHHH
Q 008509 340 YSQSARLLVSL-GVDVFRIDSAI 361 (563)
Q Consensus 340 ~~~Ea~~l~~~-G~~~~~ID~a~ 361 (563)
++||+..+.+. |+++.++=+++
T Consensus 225 ~~nE~~~lae~~GiD~~~v~~~~ 247 (415)
T PRK11064 225 FANELSLICADQGINVWELIRLA 247 (415)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHh
Confidence 68999888765 89999887776
No 70
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=99.38 E-value=3.2e-11 Score=122.56 Aligned_cols=184 Identities=10% Similarity=0.055 Sum_probs=123.2
Q ss_pred eEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCc----ccc
Q 008509 149 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY----SEF 224 (563)
Q Consensus 149 kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~----~~l 224 (563)
+|+|||+|.||.+||..|+++|++|++||+++++++... +.|.. ...+. +.+
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~-----------~~g~~-------------~~~s~~~~~~~~ 57 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMK-----------EDRTT-------------GVANLRELSQRL 57 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-----------HcCCc-------------ccCCHHHHHhhc
Confidence 799999999999999999999999999999999876643 22211 11121 245
Q ss_pred cCCCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHH--HHhhhcc-CCCceeecccCCCCC--CCCeEEEEe
Q 008509 225 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTS-SQDRIIGAHFFSPAH--VMPLLEIVR 299 (563)
Q Consensus 225 ~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS~l~i~--~la~~~~-~~~r~ig~hf~~P~~--~~~lvEiv~ 299 (563)
.++|+||.|+|.. .-++++.++.+.++++.+|++.+++.+.+ ++.+.+. +..+|+.++...++. ...+.-++.
T Consensus 58 ~~~dvIi~~vp~~--~~~~v~~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vda~vsGg~~~a~~G~~~~~g 135 (298)
T TIGR00872 58 SAPRVVWVMVPHG--IVDAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCGTSGGVWGRERGYCFMIG 135 (298)
T ss_pred CCCCEEEEEcCch--HHHHHHHHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEecCCCCCHHHHhcCCeeeeC
Confidence 6799999999987 45677889999999988887765554333 3333332 233444444332221 112333344
Q ss_pred CCCCCHHHHHHHHHHHHHhCC---ceEEecCc-chh---hhHH-HHH---HHHHHHHHHHHC-C--CCHHHHHHHH
Q 008509 300 TERTSAQVILDLMTVGKIIKK---VPVVVGNC-TGF---AVNR-AFF---PYSQSARLLVSL-G--VDVFRIDSAI 361 (563)
Q Consensus 300 ~~~t~~~~~~~~~~l~~~lGk---~~v~~~d~-~Gf---i~nR-l~~---~~~~Ea~~l~~~-G--~~~~~ID~a~ 361 (563)
+ +++.++.++++++.++. ..+++++. .|. ++++ +.. ..+.|++.+++. | ++++++-.+|
T Consensus 136 G---~~~~~~~~~~~l~~~~~~~~~~~~~G~~G~~~~~K~~~n~l~~~~~~~~aE~~~l~~~~g~~ld~~~~~~i~ 208 (298)
T TIGR00872 136 G---DGEAFARAEPLFADVAPEEQGYLYCGPCGSGHFVKMVHNGIEYGMMAAIAEGFEILRNSQFDFDIPEVARVW 208 (298)
T ss_pred C---CHHHHHHHHHHHHHhcCcCCCEEEECCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHHHHH
Confidence 4 78999999999999986 46777653 222 3333 333 235688888876 4 4888888886
No 71
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.37 E-value=3.9e-11 Score=122.18 Aligned_cols=182 Identities=16% Similarity=0.130 Sum_probs=122.8
Q ss_pred eEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCcc-ccc--
Q 008509 149 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS-EFK-- 225 (563)
Q Consensus 149 kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~l~-- 225 (563)
+|+|||+|.||.+||..|+++|++|++||+++++.+... +.| .....+.+ .++
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~-----------~~g-------------~~~~~~~~e~~~~~ 57 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALA-----------EEG-------------ATGADSLEELVAKL 57 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHH-----------HCC-------------CeecCCHHHHHhhc
Confidence 799999999999999999999999999999998876532 222 12233332 223
Q ss_pred -CCCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCCCCCH--HHHhhhccCCCceeecccCC-CCCC------CCeE
Q 008509 226 -DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKTSSQDRIIGAHFFS-PAHV------MPLL 295 (563)
Q Consensus 226 -~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS~l~i--~~la~~~~~~~r~ig~hf~~-P~~~------~~lv 295 (563)
++|+||.++|....+ .+++..+...+++++++++.+++.+. .++++.+... |.+|.+ |+.. ..+.
T Consensus 58 ~~~dvvi~~v~~~~~~-~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~----g~~~~dapvsG~~~~a~~g~~ 132 (301)
T PRK09599 58 PAPRVVWLMVPAGEIT-DATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEK----GIHFVDVGTSGGVWGLERGYC 132 (301)
T ss_pred CCCCEEEEEecCCcHH-HHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHc----CCEEEeCCCCcCHHHHhcCCe
Confidence 479999999976544 45667788888888887765444332 2344444321 555554 3321 1233
Q ss_pred EEEeCCCCCHHHHHHHHHHHHHhCC----ceEEecCc-ch---hhhHHHH-HH---HHHHHHHHHH---CCCCHHHHHHH
Q 008509 296 EIVRTERTSAQVILDLMTVGKIIKK----VPVVVGNC-TG---FAVNRAF-FP---YSQSARLLVS---LGVDVFRIDSA 360 (563)
Q Consensus 296 Eiv~~~~t~~~~~~~~~~l~~~lGk----~~v~~~d~-~G---fi~nRl~-~~---~~~Ea~~l~~---~G~~~~~ID~a 360 (563)
++.+ .++++++.++++++.+++ ..+++++. .| .++|+.+ .. .+.|++.+.+ .|++++++-.+
T Consensus 133 -~~~g--G~~~~~~~~~~~l~~~~~~~~~~~~~~G~~G~g~~~Kl~~n~l~~~~~~~~aEa~~l~~~~~~gld~~~~~~~ 209 (301)
T PRK09599 133 -LMIG--GDKEAVERLEPIFKALAPRAEDGYLHAGPVGAGHFVKMVHNGIEYGMMQAYAEGFELLEASRFDLDLAAVAEV 209 (301)
T ss_pred -EEec--CCHHHHHHHHHHHHHHcccccCCeEeECCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 3333 488999999999999998 77888762 22 2344443 32 3568888886 46788888888
Q ss_pred HH
Q 008509 361 IR 362 (563)
Q Consensus 361 ~~ 362 (563)
+.
T Consensus 210 ~~ 211 (301)
T PRK09599 210 WR 211 (301)
T ss_pred Hh
Confidence 74
No 72
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.36 E-value=3.4e-11 Score=122.41 Aligned_cols=181 Identities=18% Similarity=0.093 Sum_probs=121.3
Q ss_pred eEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCcc-ccc--
Q 008509 149 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS-EFK-- 225 (563)
Q Consensus 149 kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~l~-- 225 (563)
+|+|||+|.||..||..|+++|++|++||+++++.+... +.| ...+.+.+ .++
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~-----------~~g-------------~~~~~s~~~~~~~~ 57 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAG-----------KLG-------------ITARHSLEELVSKL 57 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHH-----------HCC-------------CeecCCHHHHHHhC
Confidence 799999999999999999999999999999998765531 222 12233443 233
Q ss_pred -CCCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCCCCC--HHHHhhhccCCCceeecccCC-CCCC------CCeE
Q 008509 226 -DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKTSSQDRIIGAHFFS-PAHV------MPLL 295 (563)
Q Consensus 226 -~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS~l~--i~~la~~~~~~~r~ig~hf~~-P~~~------~~lv 295 (563)
.+|+||.|+|.+..+ ++++.++.+.++++.+|+..+++-+ ..++++.+.. .|.+|.+ |+.. ....
T Consensus 58 ~~advVi~~vp~~~~~-~~v~~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~----~g~~~vdapV~G~~~~a~~g~~ 132 (299)
T PRK12490 58 EAPRTIWVMVPAGEVT-ESVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAE----RGIHYVDCGTSGGVWGLRNGYC 132 (299)
T ss_pred CCCCEEEEEecCchHH-HHHHHHHhccCCCCCEEEECCCCCchhHHHHHHHHHH----cCCeEEeCCCCCCHHHHhcCCe
Confidence 379999999987554 4566778777888887765433333 2344444432 1445554 3321 1123
Q ss_pred EEEeCCCCCHHHHHHHHHHHHHhCC---ceEEecCcch-----hhhHHHHH----HHHHHHHHHHHC-C--CCHHHHHHH
Q 008509 296 EIVRTERTSAQVILDLMTVGKIIKK---VPVVVGNCTG-----FAVNRAFF----PYSQSARLLVSL-G--VDVFRIDSA 360 (563)
Q Consensus 296 Eiv~~~~t~~~~~~~~~~l~~~lGk---~~v~~~d~~G-----fi~nRl~~----~~~~Ea~~l~~~-G--~~~~~ID~a 360 (563)
-++.| ++++++.++++++.+|. ..+++++ +| .++|+++. ..+.|++.+.++ | ++++++=.+
T Consensus 133 ~~~gG---~~~~~~~~~~~l~~~~~~~~~~~~~G~-~g~a~~~Kl~~n~~~~~~~~~~aEa~~l~~~~g~~ld~~~~~~~ 208 (299)
T PRK12490 133 LMVGG---DKEIYDRLEPVFKALAPEGPGYVHAGP-VGSGHFLKMVHNGIEYGMMQAYAEGLELLDKSDFDFDVEDVARL 208 (299)
T ss_pred EEecC---CHHHHHHHHHHHHHhcCcCCcEEEECC-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHH
Confidence 23344 78899999999999997 6778875 33 34455443 235689988875 6 788777777
Q ss_pred HH
Q 008509 361 IR 362 (563)
Q Consensus 361 ~~ 362 (563)
+.
T Consensus 209 ~~ 210 (299)
T PRK12490 209 WR 210 (299)
T ss_pred Hc
Confidence 63
No 73
>PLN02858 fructose-bisphosphate aldolase
Probab=99.34 E-value=2.6e-11 Score=144.29 Aligned_cols=187 Identities=16% Similarity=0.095 Sum_probs=133.9
Q ss_pred ceeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCc-cccc
Q 008509 147 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 225 (563)
Q Consensus 147 ~~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 225 (563)
-++|++||+|.||.+||.+|+++||+|++||+++++.+... +.|. ...++. +.++
T Consensus 4 ~~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~-----------~~Ga-------------~~~~s~~e~a~ 59 (1378)
T PLN02858 4 AGVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFC-----------ELGG-------------HRCDSPAEAAK 59 (1378)
T ss_pred CCeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHH-----------HcCC-------------eecCCHHHHHh
Confidence 36799999999999999999999999999999998876632 3331 223344 5678
Q ss_pred CCCEEEEecCCChHHHHHHH--HHHHhhCCCCeEEEecCCCCCHH---HHhhhccCCCceee--cccCC-CC-------C
Q 008509 226 DVDMVIEAVIESVPLKQKIF--SELEKACPPHCILATNTSTIDLN---IVGEKTSSQDRIIG--AHFFS-PA-------H 290 (563)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~--~~l~~~~~~~~ii~sntS~l~i~---~la~~~~~~~r~ig--~hf~~-P~-------~ 290 (563)
+||+||.|+|.+..++..++ ..+.+.+.++.+++. +||+++. ++++.+... | .+|.+ |+ .
T Consensus 60 ~advVi~~l~~~~~v~~V~~g~~g~~~~l~~g~iivd-~STi~p~~~~~la~~l~~~----g~~~~~lDaPVsGg~~~A~ 134 (1378)
T PLN02858 60 DAAALVVVLSHPDQVDDVFFGDEGAAKGLQKGAVILI-RSTILPLQLQKLEKKLTER----KEQIFLVDAYVSKGMSDLL 134 (1378)
T ss_pred cCCEEEEEcCChHHHHHHHhchhhHHhcCCCcCEEEE-CCCCCHHHHHHHHHHHHhc----CCceEEEEccCcCCHHHHh
Confidence 89999999999887765554 356777788888765 3455544 444444321 3 44544 33 2
Q ss_pred CCCeEEEEeCCCCCHHHHHHHHHHHHHhCCceEEe-cCc-ch---hhhHHHHHH----HHHHHHHHHHC-CCCHHHHHHH
Q 008509 291 VMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVV-GNC-TG---FAVNRAFFP----YSQSARLLVSL-GVDVFRIDSA 360 (563)
Q Consensus 291 ~~~lvEiv~~~~t~~~~~~~~~~l~~~lGk~~v~~-~d~-~G---fi~nRl~~~----~~~Ea~~l~~~-G~~~~~ID~a 360 (563)
...|.-++.| ++++++.++++++.+|+..+++ ++. .| .++|.++.. .+.||+.+.+. |++++.+-.+
T Consensus 135 ~G~L~imvGG---~~~~~~~~~p~l~~~g~~i~~~~G~~G~g~~~KL~nN~l~~~~~~a~aEAl~la~~~Gld~~~l~~v 211 (1378)
T PLN02858 135 NGKLMIIASG---RSDAITRAQPFLSAMCQKLYTFEGEIGAGSKVKMVNELLEGIHLVASAEAMALGVRAGIHPWIIYDI 211 (1378)
T ss_pred cCCeEEEEcC---CHHHHHHHHHHHHHhcCceEEecCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 3556666666 7889999999999999988865 542 23 456666543 36799888765 8999999888
Q ss_pred H-HhcC
Q 008509 361 I-RSFG 365 (563)
Q Consensus 361 ~-~~~G 365 (563)
+ .+.|
T Consensus 212 l~~s~g 217 (1378)
T PLN02858 212 ISNAAG 217 (1378)
T ss_pred HhcCCc
Confidence 8 5655
No 74
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=99.30 E-value=4.7e-11 Score=125.07 Aligned_cols=192 Identities=15% Similarity=0.218 Sum_probs=116.6
Q ss_pred eEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHH----HHHHHHHcCCCCHHHHHhhhcCeeeecCc-cc
Q 008509 149 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEA----NVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 223 (563)
Q Consensus 149 kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~----~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 223 (563)
||+|||+|.||.++|..++. ||+|++||+++++++...+.+.. .++++..+ ...++..+++. ++
T Consensus 2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~----------~~~~l~~t~~~~~~ 70 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQS----------DKIHFNATLDKNEA 70 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHh----------CCCcEEEecchhhh
Confidence 79999999999999988875 99999999999998886543211 11111111 11245555555 56
Q ss_pred ccCCCEEEEecCCChHHH---------HHHHHHHHhhCCCCeEEEecCCCCCHH---HHhhhccCCCceeecccCCCCCC
Q 008509 224 FKDVDMVIEAVIESVPLK---------QKIFSELEKACPPHCILATNTSTIDLN---IVGEKTSSQDRIIGAHFFSPAHV 291 (563)
Q Consensus 224 l~~aDlVieav~e~~~~k---------~~v~~~l~~~~~~~~ii~sntS~l~i~---~la~~~~~~~r~ig~hf~~P~~~ 291 (563)
+++||+||+|||++.+.| .++++.+.. ++++++++. .||.++. ++...+. + .++.| +|...
T Consensus 71 ~~~ad~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~-~STv~pgtt~~l~~~~~--~--~~v~~-~PE~l 143 (388)
T PRK15057 71 YRDADYVIIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVI-KSTVPVGFTAAMHKKYR--T--ENIIF-SPEFL 143 (388)
T ss_pred hcCCCEEEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEE-eeecCCchHHHHHHHhh--c--CcEEE-Ccccc
Confidence 799999999999875443 355567766 577777653 4454443 4443321 1 12322 44422
Q ss_pred C--Ce--------EEEEeCCCCCHHHHHHHHHHHHH--hCC-ceEEecCc-ch---hhhHHHH----HHHHHHHHHHHHC
Q 008509 292 M--PL--------LEIVRTERTSAQVILDLMTVGKI--IKK-VPVVVGNC-TG---FAVNRAF----FPYSQSARLLVSL 350 (563)
Q Consensus 292 ~--~l--------vEiv~~~~t~~~~~~~~~~l~~~--lGk-~~v~~~d~-~G---fi~nRl~----~~~~~Ea~~l~~~ 350 (563)
. .+ .-++.+ +++..+.+.+++.. ++. .++++.+. .+ .+++..+ .+++||+..+.+.
T Consensus 144 ~~G~a~~d~~~p~rvv~G~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~AE~~Kl~~N~~~a~~Ia~~NE~a~lae~ 220 (388)
T PRK15057 144 REGKALYDNLHPSRIVIGE---RSERAERFAALLQEGAIKQNIPTLFTDSTEAEAIKLFANTYLAMRVAYFNELDSYAES 220 (388)
T ss_pred cCCcccccccCCCEEEEEc---CcHHHHHHHHHHHhhhhcCCCceeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 11 113333 34556667777643 444 34345432 22 2344443 3578999888765
Q ss_pred -CCCHHHHHHHH
Q 008509 351 -GVDVFRIDSAI 361 (563)
Q Consensus 351 -G~~~~~ID~a~ 361 (563)
|+++.++=.++
T Consensus 221 ~GiD~~eV~~a~ 232 (388)
T PRK15057 221 LGLNTRQIIEGV 232 (388)
T ss_pred hCcCHHHHHHHh
Confidence 99999988887
No 75
>PLN02256 arogenate dehydrogenase
Probab=99.30 E-value=6.5e-11 Score=119.91 Aligned_cols=153 Identities=11% Similarity=0.024 Sum_probs=111.0
Q ss_pred ceeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCccc-c-
Q 008509 147 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE-F- 224 (563)
Q Consensus 147 ~~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-l- 224 (563)
.++|+|||+|.||.++|..+.+.|++|+++|++... +.+. ..| +...++.+. +
T Consensus 36 ~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~~-~~a~-----------~~g-------------v~~~~~~~e~~~ 90 (304)
T PLN02256 36 KLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDYS-DIAA-----------ELG-------------VSFFRDPDDFCE 90 (304)
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccHH-HHHH-----------HcC-------------CeeeCCHHHHhh
Confidence 367999999999999999999999999999998632 1110 112 122334433 3
Q ss_pred cCCCEEEEecCCChHHHHHHHHHH-HhhCCCCeEEEecCCC--CCHHHHhhhccCCCceeecccCCCCCCC------CeE
Q 008509 225 KDVDMVIEAVIESVPLKQKIFSEL-EKACPPHCILATNTST--IDLNIVGEKTSSQDRIIGAHFFSPAHVM------PLL 295 (563)
Q Consensus 225 ~~aDlVieav~e~~~~k~~v~~~l-~~~~~~~~ii~sntS~--l~i~~la~~~~~~~r~ig~hf~~P~~~~------~lv 295 (563)
.+||+||.|+|.. ...+++.++ ...++++++|++.+|+ .++..+.+.+....+|+|.||+.++... .-+
T Consensus 91 ~~aDvVilavp~~--~~~~vl~~l~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~~~~~V~~HPmaG~e~~~~~~~~~~~ 168 (304)
T PLN02256 91 EHPDVVLLCTSIL--STEAVLRSLPLQRLKRSTLFVDVLSVKEFPKNLLLQVLPEEFDILCTHPMFGPESGKGGWAGLPF 168 (304)
T ss_pred CCCCEEEEecCHH--HHHHHHHhhhhhccCCCCEEEecCCchHHHHHHHHHhCCCCCeEEecCCCCCCCCCccccCCCeE
Confidence 4799999999964 446777887 5668899999888883 5666777766555589999998877542 111
Q ss_pred EEEe----CCCCCHHHHHHHHHHHHHhCCceEEec
Q 008509 296 EIVR----TERTSAQVILDLMTVGKIIKKVPVVVG 326 (563)
Q Consensus 296 Eiv~----~~~t~~~~~~~~~~l~~~lGk~~v~~~ 326 (563)
-+.+ .+.++++.++.+.++++.+|..++.+.
T Consensus 169 ~~~~~~i~~~~~~~~~~~~l~~l~~~lGa~v~~~~ 203 (304)
T PLN02256 169 VYDKVRIGDEGEREARCERFLDIFEEEGCRMVEMS 203 (304)
T ss_pred EEecceecCCCCCHHHHHHHHHHHHHCCCEEEEeC
Confidence 1111 156788899999999999999999883
No 76
>PRK12478 enoyl-CoA hydratase; Provisional
Probab=99.28 E-value=7.3e-12 Score=126.81 Aligned_cols=97 Identities=16% Similarity=0.017 Sum_probs=87.6
Q ss_pred CccCCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCccchhccccCCCCChHHHHHHHHHHHHHHHhhCCCC
Q 008509 1 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM 80 (563)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (563)
|+|||++++|+||+++||||+|||+++|++.+.+++++++..+ +
T Consensus 173 llltg~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~------------------------------------p 216 (298)
T PRK12478 173 HSLTGRPLTGVQAAEAELINEAVPFERLEARVAEVATELARIP------------------------------------L 216 (298)
T ss_pred HHHcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCC------------------------------------H
Confidence 5789999999999999999999999999999999999998743 3
Q ss_pred hhHHHHHHHHHHhhc-cCchhhHHHHHHHHHHHhcCHHHH--------HHHHHHhhhhhhcc
Q 008509 81 PQHQACLDVIEEGIV-HGGYSGVLKEAKVFKELVMLDTSR--------GLVHVFFAQRATSK 133 (563)
Q Consensus 81 ~A~~~~~~~i~~~~~-~~~~~~l~~E~~~f~~l~~s~~~~--------~~~~aF~~kr~~~k 133 (563)
.++..+|++++.+.. .+++++++.|...+..++.|+|++ +++.+|++||++..
T Consensus 217 ~a~~~~K~~l~~~~~~~~l~~~~~~e~~~~~~~~~s~d~~e~~~~~~~egv~Af~ekR~p~f 278 (298)
T PRK12478 217 SQLQAQKLIVNQAYENMGLASTQTLGGILDGLMRNTPDALEFIRTAETQGVRAAVERRDGPF 278 (298)
T ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 588899999998776 469999999999999999999997 59999999998654
No 77
>PLN02600 enoyl-CoA hydratase
Probab=99.27 E-value=1.2e-11 Score=122.48 Aligned_cols=96 Identities=17% Similarity=0.209 Sum_probs=88.1
Q ss_pred CccCCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCccchhccccCCCCChHHHHHHHHHHHHHHHhhCCCC
Q 008509 1 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM 80 (563)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (563)
|+|||++++|+||+++||||+|||++++++.+.+++++++..+ +
T Consensus 152 l~ltg~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~la~~~------------------------------------p 195 (251)
T PLN02600 152 LIFTGRRIGAREAASMGLVNYCVPAGEAYEKALELAQEINQKG------------------------------------P 195 (251)
T ss_pred HHHhCCccCHHHHHHcCCCcEeeChhHHHHHHHHHHHHHHhCC------------------------------------H
Confidence 5789999999999999999999999999999999999998753 3
Q ss_pred hhHHHHHHHHHHhhccCchhhHHHHHHHHHHHhcCHHHHHHHHHHhhhhhhc
Q 008509 81 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATS 132 (563)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~~kr~~~ 132 (563)
.+...+|+.++.....+++++++.|...+..++.++++++++.+|++||++.
T Consensus 196 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~ekr~p~ 247 (251)
T PLN02600 196 LAIKMAKKAINEGSEVDMASGLEIEEECYEQVLKTKDRLEGLAAFAEKRKPV 247 (251)
T ss_pred HHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcCCCCC
Confidence 5788899999988888899999999999999999999999999999998753
No 78
>PRK08150 enoyl-CoA hydratase; Provisional
Probab=99.27 E-value=1.2e-11 Score=122.56 Aligned_cols=97 Identities=21% Similarity=0.220 Sum_probs=88.0
Q ss_pred CccCCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCccchhccccCCCCChHHHHHHHHHHHHHHHhhCCCC
Q 008509 1 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM 80 (563)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (563)
|+|||++++|+||+++||||+|||++++.+.|.+++++++..+ +
T Consensus 156 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~------------------------------------~ 199 (255)
T PRK08150 156 MMLTGRVYDAQEGERLGLAQYLVPAGEALDKAMELARRIAQNA------------------------------------P 199 (255)
T ss_pred HHHcCCcCCHHHHHHcCCccEeeCchHHHHHHHHHHHHHHhCC------------------------------------H
Confidence 5789999999999999999999999999999999999998753 2
Q ss_pred hhHHHHHHHHHHhhccCchhhHHHHHHHHHHHhcCHHHHHHHHHHhhhhhhcc
Q 008509 81 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 133 (563)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~~kr~~~k 133 (563)
.+...+|+.++.....+++++++.|.+.+..++.|+++++++.+|++||+++.
T Consensus 200 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~af~~kr~p~~ 252 (255)
T PRK08150 200 LTNFAVLNALPRIADMSADDGLFVESLMAAVAQSAPEAKERLRAFLEKKAAKV 252 (255)
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCCC
Confidence 57788999999887788999999999999999999999999999999987655
No 79
>KOG1680 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=99.27 E-value=8.7e-12 Score=119.29 Aligned_cols=97 Identities=20% Similarity=0.214 Sum_probs=89.6
Q ss_pred CccCCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCccchhccccCCCCChHHHHHHHHHHHHHHHhhCCCC
Q 008509 1 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM 80 (563)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (563)
|++||++++|+||+++|||++|||.++++.+|.+|+++++..+ +
T Consensus 191 ~~ltg~~~~AqeA~~~GlVn~Vvp~~~~l~eAv~l~~~Ia~~~------------------------------------~ 234 (290)
T KOG1680|consen 191 MILTGRRLGAQEAKKIGLVNKVVPSGDALGEAVKLAEQIAKNS------------------------------------P 234 (290)
T ss_pred HHHhcCcccHHHHHhCCceeEeecchhHHHHHHHHHHHHHhCC------------------------------------H
Confidence 5899999999999999999999999999999999999999854 2
Q ss_pred hhHHHHHHHHHHhhccCchhhHHHHHHHHHHHhcCHHHHHHHHHHhhhhhhcc
Q 008509 81 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 133 (563)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~~kr~~~k 133 (563)
.++++.|+.++.+...++.+++..|...|...+.+++.+|++.+|.+||+++.
T Consensus 235 ~~v~~~K~svn~~~e~~l~e~l~~e~~~~~s~~~~~d~~Eg~~~f~~kr~~~~ 287 (290)
T KOG1680|consen 235 LVVRADKESVNAAYETTLFEGLELERDLFGSTFATEDRLEGMTAFAEKRKPKF 287 (290)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHhhhhhhhhhhhhHHHHHHHHHhcccCCccc
Confidence 57888999999999999999999999999999999999999999988887644
No 80
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=99.27 E-value=2.3e-10 Score=117.95 Aligned_cols=167 Identities=19% Similarity=0.208 Sum_probs=105.7
Q ss_pred ceeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCcc-ccc
Q 008509 147 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS-EFK 225 (563)
Q Consensus 147 ~~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~l~ 225 (563)
|+||+|||+|.||+.+|..|+++|++|++||++++.++...+.-.. .. .... ......+..+++.+ .++
T Consensus 1 mmkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~------~~-~~~~---~~~~~~~~~~~~~~~~~~ 70 (325)
T PRK00094 1 MMKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADREN------PR-YLPG---IKLPDNLRATTDLAEALA 70 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcc------cc-cCCC---CcCCCCeEEeCCHHHHHh
Confidence 3589999999999999999999999999999999887654321000 00 0000 00011344555664 678
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHH-------HHhhhccCCCceeecccCCCCC-------C
Q 008509 226 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN-------IVGEKTSSQDRIIGAHFFSPAH-------V 291 (563)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS~l~i~-------~la~~~~~~~r~ig~hf~~P~~-------~ 291 (563)
+||+||.|+|.. ...+++.++.+.+++++++++.++++... .+.+........ .....|.. .
T Consensus 71 ~~D~vi~~v~~~--~~~~v~~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~~~~~~~~~--~~~~~P~~~~~~~~g~ 146 (325)
T PRK00094 71 DADLILVAVPSQ--ALREVLKQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEEELPDLAPI--AVLSGPSFAKEVARGL 146 (325)
T ss_pred CCCEEEEeCCHH--HHHHHHHHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHHHcCCCCce--EEEECccHHHHHHcCC
Confidence 999999999974 46788889999889999888776555442 222222110010 11112321 1
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHhCCceEEecCcch
Q 008509 292 MPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG 330 (563)
Q Consensus 292 ~~lvEiv~~~~t~~~~~~~~~~l~~~lGk~~v~~~d~~G 330 (563)
..++.+. + .+.+.++.+.++++..|..+....|..|
T Consensus 147 ~~~~~~~-~--~~~~~~~~~~~~l~~~~~~~~~~~d~~g 182 (325)
T PRK00094 147 PTAVVIA-S--TDEELAERVQELFHSPYFRVYTNTDVIG 182 (325)
T ss_pred CcEEEEE-e--CCHHHHHHHHHHhCCCCEEEEecCCcch
Confidence 1233333 2 3688899999999999987776666443
No 81
>PRK05862 enoyl-CoA hydratase; Provisional
Probab=99.26 E-value=1.2e-11 Score=123.05 Aligned_cols=96 Identities=20% Similarity=0.295 Sum_probs=88.1
Q ss_pred CccCCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCccchhccccCCCCChHHHHHHHHHHHHHHHhhCCCC
Q 008509 1 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM 80 (563)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (563)
|++||++++|+||+++||||+|+|++++++.|.+++++++..+ +
T Consensus 158 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~------------------------------------~ 201 (257)
T PRK05862 158 LCLTGRMMDAAEAERAGLVSRVVPADKLLDEALAAATTIASFS------------------------------------L 201 (257)
T ss_pred HHHhCCccCHHHHHHcCCCCEeeCHhHHHHHHHHHHHHHHhCC------------------------------------H
Confidence 5789999999999999999999999999999999999988743 3
Q ss_pred hhHHHHHHHHHHhhccCchhhHHHHHHHHHHHhcCHHHHHHHHHHhhhhhhc
Q 008509 81 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATS 132 (563)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~~kr~~~ 132 (563)
+++..+|++++.....++++++..|.+.+..++.|+++++++++|++||++.
T Consensus 202 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~~~~e~i~af~~kr~p~ 253 (257)
T PRK05862 202 PAVMMAKEAVNRAYETTLAEGLLFERRLFHSLFATEDQKEGMAAFVEKRKPV 253 (257)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhccCCCC
Confidence 6888999999998888899999999999999999999999999999998653
No 82
>PLN02888 enoyl-CoA hydratase
Probab=99.25 E-value=1.9e-11 Score=121.82 Aligned_cols=99 Identities=23% Similarity=0.223 Sum_probs=89.0
Q ss_pred CccCCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCccchhccccCCCCChHHHHHHHHHHHHHHHhhCCCC
Q 008509 1 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM 80 (563)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (563)
|+|||++++|+||+++||||+|||++++.+.|.+++++++..+ +
T Consensus 163 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~------------------------------------~ 206 (265)
T PLN02888 163 VSLTAMPLTAETAERWGLVNHVVEESELLKKAREVAEAIIKNN------------------------------------Q 206 (265)
T ss_pred HHHhCCccCHHHHHHcCCccEeeChHHHHHHHHHHHHHHHhCC------------------------------------H
Confidence 5789999999999999999999999999999999999998743 3
Q ss_pred hhHHHHHHHHHHhhccCchhhHHHHHHHHHHHh--cCHHHHHHHHHHhhhhhhccCC
Q 008509 81 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELV--MLDTSRGLVHVFFAQRATSKVP 135 (563)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~--~s~~~~~~~~aF~~kr~~~k~~ 135 (563)
.+...+|++++.....++++++..|...+..++ .++++++++.+|++||+++|.+
T Consensus 207 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~e~~~af~ekr~~~~~~ 263 (265)
T PLN02888 207 GMVLRYKSVINDGLKLDLGHALQLEKERAHDYYNGMTKEQFQKMQEFIAGRSSKKPS 263 (265)
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHhcCCCCCCC
Confidence 588899999998888889999999999888885 5999999999999999887754
No 83
>PRK07658 enoyl-CoA hydratase; Provisional
Probab=99.25 E-value=2e-11 Score=121.43 Aligned_cols=96 Identities=32% Similarity=0.478 Sum_probs=87.5
Q ss_pred CccCCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCccchhccccCCCCChHHHHHHHHHHHHHHHhhCCCC
Q 008509 1 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM 80 (563)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (563)
|+++|++++|+||+++||||+|||++++.+.|.+++++++..+ +
T Consensus 158 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~------------------------------------~ 201 (257)
T PRK07658 158 MMLTSEPITGAEALKWGLVNGVFPEETLLDDAKKLAKKIAGKS------------------------------------P 201 (257)
T ss_pred HHHcCCCcCHHHHHHcCCcCeecChhHHHHHHHHHHHHHHhCC------------------------------------H
Confidence 5789999999999999999999999999999999999988743 3
Q ss_pred hhHHHHHHHHHHhhccCchhhHHHHHHHHHHHhcCHHHHHHHHHHhhhhhhc
Q 008509 81 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATS 132 (563)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~~kr~~~ 132 (563)
.++..+|++++.+...+++++++.|...|..++.|+++++++.+|++||+++
T Consensus 202 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~egi~af~~kr~p~ 253 (257)
T PRK07658 202 ATTRAVLELLQTTKSSSYYEGVKREAKIFGEVFTSEDAKEGVQAFLEKRKPS 253 (257)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCC
Confidence 5888899999988777899999999999999999999999999999988654
No 84
>PLN02858 fructose-bisphosphate aldolase
Probab=99.25 E-value=1.9e-10 Score=137.11 Aligned_cols=190 Identities=18% Similarity=0.196 Sum_probs=131.8
Q ss_pred cceeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCc-ccc
Q 008509 146 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 224 (563)
Q Consensus 146 ~~~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 224 (563)
..++|+|||+|.||.+||..|+.+|++|++||+++++.+... +.|. ....+. +.+
T Consensus 323 ~~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~-----------~~Ga-------------~~~~s~~e~~ 378 (1378)
T PLN02858 323 PVKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFE-----------NAGG-------------LAGNSPAEVA 378 (1378)
T ss_pred CCCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-----------HcCC-------------eecCCHHHHH
Confidence 358899999999999999999999999999999998866532 2231 122333 567
Q ss_pred cCCCEEEEecCCChHHHHHHHH--HHHhhCCCCeEEEecCCCCCHH---HHhhhccCCCceeecccCC-CCC-------C
Q 008509 225 KDVDMVIEAVIESVPLKQKIFS--ELEKACPPHCILATNTSTIDLN---IVGEKTSSQDRIIGAHFFS-PAH-------V 291 (563)
Q Consensus 225 ~~aDlVieav~e~~~~k~~v~~--~l~~~~~~~~ii~sntS~l~i~---~la~~~~~~~r~ig~hf~~-P~~-------~ 291 (563)
++||+||.|||...+++..++. .+.+.+.++.+++.. ||+++. ++++.+.. .-.|.+|.+ |+. .
T Consensus 379 ~~aDvVi~~V~~~~~v~~Vl~g~~g~~~~l~~g~ivVd~-STvsP~~~~~la~~l~~--~g~g~~~lDAPVsGg~~~A~~ 455 (1378)
T PLN02858 379 KDVDVLVIMVANEVQAENVLFGDLGAVSALPAGASIVLS-STVSPGFVIQLERRLEN--EGRDIKLVDAPVSGGVKRAAM 455 (1378)
T ss_pred hcCCEEEEecCChHHHHHHHhchhhHHhcCCCCCEEEEC-CCCCHHHHHHHHHHHHh--hCCCcEEEEccCCCChhhhhc
Confidence 8999999999987776655543 356667788877653 444444 34444322 013666655 332 3
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHhCCceEEecCcch-----hhhHHHHH----HHHHHHHHHHHC-CCCHHHHHHHH
Q 008509 292 MPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG-----FAVNRAFF----PYSQSARLLVSL-GVDVFRIDSAI 361 (563)
Q Consensus 292 ~~lvEiv~~~~t~~~~~~~~~~l~~~lGk~~v~~~d~~G-----fi~nRl~~----~~~~Ea~~l~~~-G~~~~~ID~a~ 361 (563)
..|.-++.| +++.++.++++++.+|+..+++...+| .++|.++. ..+.|++.+.+. |++++.+-+++
T Consensus 456 G~L~imvgG---~~~~~~~~~plL~~lg~~i~~~~g~~G~a~~~KL~nN~l~~~~~aa~aEal~la~k~Gld~~~l~evl 532 (1378)
T PLN02858 456 GTLTIMASG---TDEALKSAGSVLSALSEKLYVIKGGCGAGSGVKMVNQLLAGVHIASAAEAMAFGARLGLNTRKLFDII 532 (1378)
T ss_pred CCceEEEEC---CHHHHHHHHHHHHHHhCcEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 345555565 678999999999999998877543234 35666653 346799888754 99999988777
Q ss_pred -HhcC
Q 008509 362 -RSFG 365 (563)
Q Consensus 362 -~~~G 365 (563)
.+.|
T Consensus 533 ~~s~g 537 (1378)
T PLN02858 533 SNAGG 537 (1378)
T ss_pred Hhhcc
Confidence 5544
No 85
>PRK08138 enoyl-CoA hydratase; Provisional
Probab=99.25 E-value=2e-11 Score=121.65 Aligned_cols=96 Identities=21% Similarity=0.208 Sum_probs=87.3
Q ss_pred CccCCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCccchhccccCCCCChHHHHHHHHHHHHHHHhhCCCC
Q 008509 1 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM 80 (563)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (563)
|+|+|++++|+||+++||||+|||++++.+.|.++++++++.+ +
T Consensus 162 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~------------------------------------~ 205 (261)
T PRK08138 162 MALTGCMVPAPEALAIGLVSEVVEDEQTLPRALELAREIARMP------------------------------------P 205 (261)
T ss_pred HHHcCCCCCHHHHHHCCCCcEecCchHHHHHHHHHHHHHHhCC------------------------------------H
Confidence 5789999999999999999999999999999999999987643 3
Q ss_pred hhHHHHHHHHHHhhccCchhhHHHHHHHHHHHhcCHHHHHHHHHHhhhhhhc
Q 008509 81 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATS 132 (563)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~~kr~~~ 132 (563)
.++..+|++++.....++++++..|.+.|..++.|+++++++++|++||+++
T Consensus 206 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~i~af~~kr~~~ 257 (261)
T PRK08138 206 LALAQIKEVVLAGADAPLDAALALERKAFQLLFDSEDQKEGMDAFLEKRKPA 257 (261)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCC
Confidence 5888999999988888899999999999999999999999999999998654
No 86
>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB. This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).
Probab=99.24 E-value=2e-11 Score=121.36 Aligned_cols=96 Identities=18% Similarity=0.175 Sum_probs=87.9
Q ss_pred CccCCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCccchhccccCCCCChHHHHHHHHHHHHHHHhhCCCC
Q 008509 1 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM 80 (563)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (563)
|+++|++++|+||+++||||+|||++++++.+.+++++++..+ +
T Consensus 157 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~------------------------------------~ 200 (256)
T TIGR02280 157 LAMLGEKLDARTAASWGLIWQVVDDAALMDEAQALAVHLAAQP------------------------------------T 200 (256)
T ss_pred HHHcCCCCCHHHHHHcCCcceeeChHHHHHHHHHHHHHHHhCC------------------------------------H
Confidence 5789999999999999999999999999999999999998753 2
Q ss_pred hhHHHHHHHHHHhhccCchhhHHHHHHHHHHHhcCHHHHHHHHHHhhhhhhc
Q 008509 81 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATS 132 (563)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~~kr~~~ 132 (563)
.+...+|+.++.....+++++++.|.+.+..++.|+++++++.+|++||++.
T Consensus 201 ~~~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~ 252 (256)
T TIGR02280 201 RGLALTKRAIQAAATNSLDTQLDLERDLQRELGRSADYAEGVTAFLDKRNPQ 252 (256)
T ss_pred HHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHHcCCCCC
Confidence 5788899999988888899999999999999999999999999999988654
No 87
>PRK05980 enoyl-CoA hydratase; Provisional
Probab=99.24 E-value=1.7e-11 Score=122.09 Aligned_cols=95 Identities=24% Similarity=0.342 Sum_probs=87.2
Q ss_pred CccCCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCccchhccccCCCCChHHHHHHHHHHHHHHHhhCCCC
Q 008509 1 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM 80 (563)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (563)
|+++|++++|+||+++||||+|||++++++.|.++++++++.+ +
T Consensus 164 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~------------------------------------p 207 (260)
T PRK05980 164 LLLTGDAFSAERALEIGLVNAVVPHEELLPAARALARRIIRHS------------------------------------P 207 (260)
T ss_pred HHHcCCccCHHHHHHcCCCCcccCHHHHHHHHHHHHHHHHhCC------------------------------------H
Confidence 5789999999999999999999999999999999999988743 2
Q ss_pred hhHHHHHHHHHHhhccCchhhHHHHHHHHHHHhcCHHHHHHHHHHhhhhhh
Q 008509 81 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRAT 131 (563)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~~kr~~ 131 (563)
.++..+|++++.....+++++++.|...+..++.|+++++++.+|++||++
T Consensus 208 ~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr~p 258 (260)
T PRK05980 208 VAVAAILTAVTRGLNLSIAEGLLIESEQFARMAGSADLREGLAAWIERRRP 258 (260)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhccCCC
Confidence 578889999998888889999999999999999999999999999999864
No 88
>PRK07938 enoyl-CoA hydratase; Provisional
Probab=99.24 E-value=1.5e-11 Score=121.58 Aligned_cols=95 Identities=19% Similarity=0.145 Sum_probs=86.4
Q ss_pred CccCCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCccchhccccCCCCChHHHHHHHHHHHHHHHhhCCCC
Q 008509 1 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM 80 (563)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (563)
|+|||++++|+||+++||||+|||++++++.|.+++++++..+ +
T Consensus 155 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~------------------------------------~ 198 (249)
T PRK07938 155 LFFTAATITAAELHHFGSVEEVVPRDQLDEAALEVARKIAAKD------------------------------------T 198 (249)
T ss_pred HHHhCCcCCHHHHHHCCCccEEeCHHHHHHHHHHHHHHHHhCC------------------------------------H
Confidence 5789999999999999999999999999999999999998743 3
Q ss_pred hhHHHHHHHHHHhhccCchhhHHHHHHHHHHHhcCHHHHHHHHHHhhhhhh
Q 008509 81 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRAT 131 (563)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~~kr~~ 131 (563)
.+...+|++++.....+++++++.|...+..++.++++++++.+|++||++
T Consensus 199 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~eg~~af~ekr~p 249 (249)
T PRK07938 199 RVIRAAKEALNGIDPQDVERSYRWEQGFTFELNLAGVSDEHRDAFVEKRKA 249 (249)
T ss_pred HHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCccHHHHHHHHHhcCCC
Confidence 578889999988877788999999999999999999999999999999853
No 89
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=99.24 E-value=3.4e-10 Score=121.01 Aligned_cols=190 Identities=15% Similarity=0.131 Sum_probs=124.9
Q ss_pred eEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCc----ccc
Q 008509 149 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY----SEF 224 (563)
Q Consensus 149 kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~----~~l 224 (563)
+|+|||+|.||.+||..|+++|++|++||+++++++...+. ...|. .+....+. +.+
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~--------~~~g~-----------~~~~~~s~~e~v~~l 61 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAE--------HAKGK-----------KIVGAYSIEEFVQSL 61 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhh--------ccCCC-----------CceecCCHHHHHhhc
Confidence 48999999999999999999999999999999987764310 00010 01222233 234
Q ss_pred cCCCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHH--HHhhhcc-CCCceeecccCCCC---CCCCeEEEE
Q 008509 225 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTS-SQDRIIGAHFFSPA---HVMPLLEIV 298 (563)
Q Consensus 225 ~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS~l~i~--~la~~~~-~~~r~ig~hf~~P~---~~~~lvEiv 298 (563)
+.+|+||.+||....+ .+++.++.+.++++.||++.+++.+.+ +.++.+. +..+|++++..-.+ ...+ -++
T Consensus 62 ~~~dvIil~v~~~~~v-~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG~~gA~~G~--~im 138 (467)
T TIGR00873 62 ERPRKIMLMVKAGAPV-DAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGGEEGARKGP--SIM 138 (467)
T ss_pred CCCCEEEEECCCcHHH-HHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCCHHHHhcCC--cCC
Confidence 6799999999986554 567788989999999888766555443 2333332 22334443332211 1223 233
Q ss_pred eCCCCCHHHHHHHHHHHHHhCCce------EEecC-cchh---hhH-HHHHH---HHHHHHHHHH--CCCCHHHHHHHHH
Q 008509 299 RTERTSAQVILDLMTVGKIIKKVP------VVVGN-CTGF---AVN-RAFFP---YSQSARLLVS--LGVDVFRIDSAIR 362 (563)
Q Consensus 299 ~~~~t~~~~~~~~~~l~~~lGk~~------v~~~d-~~Gf---i~n-Rl~~~---~~~Ea~~l~~--~G~~~~~ID~a~~ 362 (563)
.+ .++++++.++++++.++..+ .++++ ..|. ++| -+... .+.|++.++. .|++++++-.++.
T Consensus 139 ~G--G~~~a~~~~~p~L~~ia~~~~~~~~~~~~G~~GsG~~vKmvhN~i~~~~m~~~aEa~~ll~~~~g~~~~~l~~v~~ 216 (467)
T TIGR00873 139 PG--GSAEAWPLVAPIFQKIAAKVDGEPCCTWIGPDGAGHYVKMVHNGIEYGDMQLICEAYDILKDGLGLSNEEIAEVFT 216 (467)
T ss_pred CC--CCHHHHHHHHHHHHHHhhhcCCCCceEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 33 48899999999999998763 56764 2332 334 34333 3679999874 5889999888873
No 90
>PRK08258 enoyl-CoA hydratase; Provisional
Probab=99.23 E-value=2.3e-11 Score=122.25 Aligned_cols=97 Identities=22% Similarity=0.248 Sum_probs=88.5
Q ss_pred CccCCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCccchhccccCCCCChHHHHHHHHHHHHHHHhhCCCC
Q 008509 1 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM 80 (563)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (563)
|+|+|++++|+||+++||||+|||++++++.+.+++++++..+ +
T Consensus 178 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~------------------------------------~ 221 (277)
T PRK08258 178 LLYTGRSMSAEEGERWGFFNRLVEPEELLAEAQALARRLAAGP------------------------------------T 221 (277)
T ss_pred HHHcCCCCCHHHHHHcCCCcEecCHHHHHHHHHHHHHHHHhCC------------------------------------H
Confidence 5789999999999999999999999999999999999998743 3
Q ss_pred hhHHHHHHHHHHhhccCchhhHHHHHHHHHHHhcCHHHHHHHHHHhhhhhhcc
Q 008509 81 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 133 (563)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~~kr~~~k 133 (563)
.+...+|++++.....+++++++.|...+..++.|+++++++.+|++||++..
T Consensus 222 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~~ 274 (277)
T PRK08258 222 FAHGMTKTMLHQEWDMGLEEAIEAEAQAQAICMQTEDFRRAYEAFVAKRKPVF 274 (277)
T ss_pred HHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCC
Confidence 58888999999888888999999999999999999999999999999987643
No 91
>PRK08139 enoyl-CoA hydratase; Validated
Probab=99.23 E-value=2.3e-11 Score=121.36 Aligned_cols=96 Identities=18% Similarity=0.177 Sum_probs=87.8
Q ss_pred CccCCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCccchhccccCCCCChHHHHHHHHHHHHHHHhhCCCC
Q 008509 1 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM 80 (563)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (563)
|++||++++|+||+++||||+|||++++.+.+.+++++++..+ +
T Consensus 167 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~------------------------------------~ 210 (266)
T PRK08139 167 MLLTGEFIDAATAREWGLVNRVVPADALDAAVARLAAVIAAKS------------------------------------P 210 (266)
T ss_pred HHHcCCccCHHHHHHcCCccEeeChhHHHHHHHHHHHHHHhCC------------------------------------H
Confidence 5789999999999999999999999999999999999998753 3
Q ss_pred hhHHHHHHHHHHhhccCchhhHHHHHHHHHHHhcCHHHHHHHHHHhhhhhhc
Q 008509 81 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATS 132 (563)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~~kr~~~ 132 (563)
.+...+|++++.....++++++..|.+.+..++.++++++++.+|++||+++
T Consensus 211 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~ 262 (266)
T PRK08139 211 AAVRIGKEAFYRQAEMPLADAYAYAGDVMAENMMAEDAEEGIDAFLEKRPPE 262 (266)
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCC
Confidence 5788899999998888899999999999999999999999999999987654
No 92
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=99.23 E-value=2.1e-11 Score=124.58 Aligned_cols=126 Identities=20% Similarity=0.314 Sum_probs=96.3
Q ss_pred ceeEEEEcCCcchHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCccccc
Q 008509 147 VRKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 225 (563)
Q Consensus 147 ~~kv~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 225 (563)
.+||+|||+|.||+++|..++..|+ +|+++|++++.++. . .++..... .......++..++|+++++
T Consensus 6 ~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~-~-----~ld~~~~~------~~~~~~~~I~~~~d~~~l~ 73 (321)
T PTZ00082 6 RRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQG-K-----ALDISHSN------VIAGSNSKVIGTNNYEDIA 73 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhH-H-----HHHHHhhh------hccCCCeEEEECCCHHHhC
Confidence 3699999999999999999999996 99999999987432 1 11111110 0111123577778999999
Q ss_pred CCCEEEEec-------------------CCChHHHHHHHHHHHhhCCCC-eEEEecCCCCCHHHHhhhccCC-Cceeecc
Q 008509 226 DVDMVIEAV-------------------IESVPLKQKIFSELEKACPPH-CILATNTSTIDLNIVGEKTSSQ-DRIIGAH 284 (563)
Q Consensus 226 ~aDlVieav-------------------~e~~~~k~~v~~~l~~~~~~~-~ii~sntS~l~i~~la~~~~~~-~r~ig~h 284 (563)
+||+||+++ .++..++++++.++.+++++. .|++||++.+....+......| .|++|++
T Consensus 74 ~aDiVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~di~t~~~~~~sg~p~~rviGlg 153 (321)
T PTZ00082 74 GSDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLDVMVKLLQEHSGLPKNKVCGMA 153 (321)
T ss_pred CCCEEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHhcCCChhhEEEec
Confidence 999999955 668888999999999999774 5667999988888887777765 7899986
No 93
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.23 E-value=7.9e-11 Score=119.67 Aligned_cols=136 Identities=12% Similarity=0.111 Sum_probs=91.5
Q ss_pred HHHHHH-cCCCCcccCccccccCCCC-------CCCCCCCchhHHHHHhhhccCCCCCC-Cccc---chHHHHHHHHHHH
Q 008509 403 VDLLLK-SGRNGKANGKGLYTYEKGS-------KPKPDPSVLPIIEECRRLSNIMPGGK-PISV---TEKEIVEMILFPV 470 (563)
Q Consensus 403 l~~l~~-~g~~G~k~g~GFY~y~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~i~~r~l~~~ 470 (563)
..++.+ ..+..+.-|-+||++..-. ....+|++......... ..|| +..+ +++||.||++.++
T Consensus 124 ~s~la~~~~~p~R~~g~HffnP~~~~pLVEVv~g~~T~~e~~~~~~~f~~-----~lGk~pV~v~kd~pGFi~NRl~~a~ 198 (321)
T PRK07066 124 PTDFYARATHPERCVVGHPFNPVYLLPLVEVLGGERTAPEAVDAAMGIYR-----ALGMRPLHVRKEVPGFIADRLLEAL 198 (321)
T ss_pred HHHHHHhcCCcccEEEEecCCccccCceEEEeCCCCCCHHHHHHHHHHHH-----HcCCEeEecCCCCccHHHHHHHHHH
Confidence 344533 3667888899999976432 13455555443333221 1232 3223 5899999999999
Q ss_pred HHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCcHhHHHHHhCHHH-HHHHHHHHHHHhCC---CCCCCHHHHHHHH
Q 008509 471 VNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANY-VYTSLKKWSQLYGN---FFKPSRFLEERAT 544 (563)
Q Consensus 471 ~~ea~~~l~~gv~~~~~diD~~~~~g~g~p~~~gGp~~~~d~~G~~~-~~~~~~~~~~~~~~---~~~p~~~l~~~~~ 544 (563)
+|||++++++|++ |++|||.+|++|+|||.-.-|||+++|.+|+|. +.+.++.+...+.. .+.+++++.++++
T Consensus 199 ~~EA~~lv~eGva-s~edID~a~~~g~g~r~~~~Gpf~~~Dl~Gld~g~~~~~~~~g~~~~~~~~~~~~p~~~~~~~~ 275 (321)
T PRK07066 199 WREALHLVNEGVA-TTGEIDDAIRFGAGIRWSFMGTFLTYTLAGGDAGMRHFMQQFGPALELPWTKLVAPELTDALID 275 (321)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHhCCCCCccCcCHHHHhhhcChHHHHHHHHHHhhhhhhHHHHhcCCCcccHHHHH
Confidence 9999999999999 999999999999998711239999999999997 44444554433211 2444445555554
No 94
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=99.22 E-value=3.3e-10 Score=120.10 Aligned_cols=200 Identities=17% Similarity=0.142 Sum_probs=122.3
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCcccccCC
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 227 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 227 (563)
+||+|||+|.||..+|..|+. |++|++||+++++++...+...... + ...++... ..++..+++.+.+++|
T Consensus 7 mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~~G~~~~~----e---~~~~~l~~-~g~l~~t~~~~~~~~a 77 (425)
T PRK15182 7 VKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELKNGVDVNL----E---TTEEELRE-ARYLKFTSEIEKIKEC 77 (425)
T ss_pred CeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHHCcCCCCC----C---CCHHHHHh-hCCeeEEeCHHHHcCC
Confidence 689999999999999999887 6999999999999887532110000 0 00111111 1356778888889999
Q ss_pred CEEEEecCCCh------HHH--HHHHHHHHhhCCCCeEEEecCCCCCHH---HHh-hhccC------CCceeecccCCCC
Q 008509 228 DMVIEAVIESV------PLK--QKIFSELEKACPPHCILATNTSTIDLN---IVG-EKTSS------QDRIIGAHFFSPA 289 (563)
Q Consensus 228 DlVieav~e~~------~~k--~~v~~~l~~~~~~~~ii~sntS~l~i~---~la-~~~~~------~~r~ig~hf~~P~ 289 (563)
|+||.|||... ++. ....+.|.++++++.+++. .||+++. ++. ..+.. -+.|.-. |+|.
T Consensus 78 dvvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~-~STv~pgtt~~~~~~~l~~~~g~~~~~~~~~~--~~PE 154 (425)
T PRK15182 78 NFYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVY-ESTVYPGCTEEECVPILARMSGMTFNQDFYVG--YSPE 154 (425)
T ss_pred CEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEE-ecCCCCcchHHHHHHHHHhccCCCcCCCeeEe--eCCC
Confidence 99999999662 222 2234578888888887754 3444432 221 11111 0111111 2333
Q ss_pred CCC---------CeEEEEeCCCCCHHHHHHHHHHHHHhC-CceEEecC-cch---hhhHHHH----HHHHHHHHHHHHC-
Q 008509 290 HVM---------PLLEIVRTERTSAQVILDLMTVGKIIK-KVPVVVGN-CTG---FAVNRAF----FPYSQSARLLVSL- 350 (563)
Q Consensus 290 ~~~---------~lvEiv~~~~t~~~~~~~~~~l~~~lG-k~~v~~~d-~~G---fi~nRl~----~~~~~Ea~~l~~~- 350 (563)
... .+--++.| .+++..+.+..+++.+. ..++++.+ ..+ .++|..+ .+++||+..+.+.
T Consensus 155 ~v~~G~a~~~~~~~~riv~G--~~~~~~~~~~~ly~~~~~~~~~~~~~~~~AE~~Kl~~N~~~av~Ia~~NE~a~lae~~ 232 (425)
T PRK15182 155 RINPGDKKHRLTNIKKITSG--STAQIAELIDEVYQQIISAGTYKAESIKVAEAAKVIENTQRDLNIALVNELAIIFNRL 232 (425)
T ss_pred cCCCCcccccccCCCeEEEC--CCHHHHHHHHHHHHHHhhcCcEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 221 11124555 35778888999998875 34555543 222 3445544 3578999888765
Q ss_pred CCCHHHHHHHH
Q 008509 351 GVDVFRIDSAI 361 (563)
Q Consensus 351 G~~~~~ID~a~ 361 (563)
|+++.++=+++
T Consensus 233 GiD~~~v~~a~ 243 (425)
T PRK15182 233 NIDTEAVLRAA 243 (425)
T ss_pred CcCHHHHHHHh
Confidence 99998887776
No 95
>PRK06143 enoyl-CoA hydratase; Provisional
Probab=99.22 E-value=3.2e-11 Score=119.74 Aligned_cols=94 Identities=15% Similarity=0.143 Sum_probs=86.4
Q ss_pred CccCCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCccchhccccCCCCChHHHHHHHHHHHHHHHhhCCCC
Q 008509 1 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM 80 (563)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (563)
|+++|++++|+||+++||||+|||++++.+.+.+++++++..+ +
T Consensus 163 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~------------------------------------~ 206 (256)
T PRK06143 163 LLLTGETIDAAQALAWGLVDRVVPLAELDAAVERLAASLAGCG------------------------------------P 206 (256)
T ss_pred HHHcCCcCCHHHHHHCCCcCeecCHHHHHHHHHHHHHHHHcCC------------------------------------H
Confidence 5789999999999999999999999999999999999998753 3
Q ss_pred hhHHHHHHHHHHhhccCchhhHHHHHHHHHHHhcCHHHHHHHHHHhhhhh
Q 008509 81 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRA 130 (563)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~~kr~ 130 (563)
.+...+|+.++.....++++++..|...+..++.|+++++++++|++||+
T Consensus 207 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~e~~~af~ekr~ 256 (256)
T PRK06143 207 QALRQQKRLLREWEDMPLDVAIDDSVAEFGAAFLTGEPQRHMAAFLNRKR 256 (256)
T ss_pred HHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHhhcC
Confidence 58888999999887788999999999999999999999999999999874
No 96
>PRK07799 enoyl-CoA hydratase; Provisional
Probab=99.22 E-value=3.2e-11 Score=120.31 Aligned_cols=96 Identities=23% Similarity=0.196 Sum_probs=87.5
Q ss_pred CccCCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCccchhccccCCCCChHHHHHHHHHHHHHHHhhCCCC
Q 008509 1 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM 80 (563)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (563)
|+|||++++|+||+++||||+|||++++++.+.+++++++..+ +
T Consensus 164 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~~~~~------------------------------------~ 207 (263)
T PRK07799 164 LLLTGRHITAAEAKEIGLIGHVVPDGQALDKALELAELINANG------------------------------------P 207 (263)
T ss_pred HHHcCCCCCHHHHHHcCCccEecCcchHHHHHHHHHHHHHhcC------------------------------------h
Confidence 5789999999999999999999999999999999999988743 3
Q ss_pred hhHHHHHHHHHHhhccCchhhHHHHHHHHHHHhcCHHHHHHHHHHhhhhhhc
Q 008509 81 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATS 132 (563)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~~kr~~~ 132 (563)
.+...+|++++.....+++++++.|.+.+..++.++++++++++|+++|+++
T Consensus 208 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~af~~~r~p~ 259 (263)
T PRK07799 208 LAVQAILRTIRETEGMHENEAFKIDTKIGIPVFLSEDAKEGPRAFAEKRAPN 259 (263)
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCccHHHHHHHHHccCCCC
Confidence 5888999999988888899999999999999999999999999999987653
No 97
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=99.22 E-value=4.9e-10 Score=113.62 Aligned_cols=185 Identities=15% Similarity=0.078 Sum_probs=125.1
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCcccccCC
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 227 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 227 (563)
++|+|||.|.||.++|..|..+|++|++++++.++.... ..+.| +...+..+.++.|
T Consensus 18 ktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~----------A~~~G-------------~~~~s~~eaa~~A 74 (330)
T PRK05479 18 KKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKK----------AEADG-------------FEVLTVAEAAKWA 74 (330)
T ss_pred CEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHH----------HHHCC-------------CeeCCHHHHHhcC
Confidence 679999999999999999999999999998875432221 01112 1222222578899
Q ss_pred CEEEEecCCChHHHHHHH-HHHHhhCCCCeEEEecCCCCCHHHHhhhccCCCceeecccCCCCC-------CCCeEE-EE
Q 008509 228 DMVIEAVIESVPLKQKIF-SELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAH-------VMPLLE-IV 298 (563)
Q Consensus 228 DlVieav~e~~~~k~~v~-~~l~~~~~~~~ii~sntS~l~i~~la~~~~~~~r~ig~hf~~P~~-------~~~lvE-iv 298 (563)
|+|+.++|.... ..++ .++.+.++++++| +-.++.++..+....+...+++-..|..|.+ .+..+- ++
T Consensus 75 DVVvLaVPd~~~--~~V~~~~I~~~Lk~g~iL-~~a~G~~i~~~~~~p~~~~~Vi~vaPn~Pg~~vr~~~~~G~Gv~~l~ 151 (330)
T PRK05479 75 DVIMILLPDEVQ--AEVYEEEIEPNLKEGAAL-AFAHGFNIHFGQIVPPADVDVIMVAPKGPGHLVRREYEEGGGVPCLI 151 (330)
T ss_pred CEEEEcCCHHHH--HHHHHHHHHhcCCCCCEE-EECCCCChhhceeccCCCCcEEEeCCCCCchhhhhhhhcCCCceEEE
Confidence 999999996643 6777 7799999999988 7788888887765555555688888877876 332222 22
Q ss_pred -eCCCCCHHHHHHHHHHHHHhCCceE-----EecC-c-chhhhHHH-H----HHHHHHHHHH-HHCCCCHHHHH
Q 008509 299 -RTERTSAQVILDLMTVGKIIKKVPV-----VVGN-C-TGFAVNRA-F----FPYSQSARLL-VSLGVDVFRID 358 (563)
Q Consensus 299 -~~~~t~~~~~~~~~~l~~~lGk~~v-----~~~d-~-~Gfi~nRl-~----~~~~~Ea~~l-~~~G~~~~~ID 358 (563)
.....+.+..+.+..++..+|..+. ..++ . ...+..+. + ..++..++.. ++.|++|+..-
T Consensus 152 av~~d~t~~a~~~a~~l~~aiG~~~~g~~~ttf~~e~~~dl~geq~vl~gg~~~l~~~~~e~l~eaG~~pe~Ay 225 (330)
T PRK05479 152 AVHQDASGNAKDLALAYAKGIGGTRAGVIETTFKEETETDLFGEQAVLCGGLTELIKAGFETLVEAGYQPEMAY 225 (330)
T ss_pred EecCCCCHHHHHHHHHHHHHcCCCccceeeeeecccccccchhhHHHHhhHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 3445568889999999999998876 2322 1 12222222 2 2345555544 45578776543
No 98
>PRK07680 late competence protein ComER; Validated
Probab=99.21 E-value=9.3e-10 Score=110.50 Aligned_cols=151 Identities=13% Similarity=0.087 Sum_probs=107.4
Q ss_pred eEEEEcCCcchHHHHHHHHhCCC----eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCc-cc
Q 008509 149 KVAVIGGGLMGSGIATAHILNNI----YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 223 (563)
Q Consensus 149 kv~ViGaG~mG~~iA~~la~~G~----~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 223 (563)
+|+|||+|.||..|+..|.++|+ +|+++|+++++.+...+ + ...+..+.+. +.
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~-----------~-----------~~g~~~~~~~~~~ 59 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKE-----------R-----------YPGIHVAKTIEEV 59 (273)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHH-----------H-----------cCCeEEECCHHHH
Confidence 69999999999999999999994 79999999887654211 0 0013334444 45
Q ss_pred ccCCCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhhhccCCCceeecccCCCCCCCC-eEEEEeCCC
Q 008509 224 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMP-LLEIVRTER 302 (563)
Q Consensus 224 l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS~l~i~~la~~~~~~~r~ig~hf~~P~~~~~-lvEiv~~~~ 302 (563)
+.+||+||.|++.. .-.++++++.+.++++++|++.++++++..+...+. .+.+-.++..|..... ..-++.+..
T Consensus 60 ~~~aDiVilav~p~--~~~~vl~~l~~~l~~~~~iis~~ag~~~~~L~~~~~--~~~~r~~p~~~~~~~~G~t~~~~g~~ 135 (273)
T PRK07680 60 ISQSDLIFICVKPL--DIYPLLQKLAPHLTDEHCLVSITSPISVEQLETLVP--CQVARIIPSITNRALSGASLFTFGSR 135 (273)
T ss_pred HHhCCEEEEecCHH--HHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcC--CCEEEECCChHHHHhhccEEEeeCCC
Confidence 78999999999743 356788888888888888889888899998888764 2344444433321111 122345666
Q ss_pred CCHHHHHHHHHHHHHhCCceEEec
Q 008509 303 TSAQVILDLMTVGKIIKKVPVVVG 326 (563)
Q Consensus 303 t~~~~~~~~~~l~~~lGk~~v~~~ 326 (563)
.+++..+.+.+++..+|. ++.+.
T Consensus 136 ~~~~~~~~~~~ll~~~G~-~~~i~ 158 (273)
T PRK07680 136 CSEEDQQKLERLFSNIST-PLVIE 158 (273)
T ss_pred CCHHHHHHHHHHHHcCCC-EEEEC
Confidence 778888999999999995 44543
No 99
>PRK08140 enoyl-CoA hydratase; Provisional
Probab=99.21 E-value=3.5e-11 Score=120.06 Aligned_cols=96 Identities=18% Similarity=0.150 Sum_probs=87.4
Q ss_pred CccCCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCccchhccccCCCCChHHHHHHHHHHHHHHHhhCCCC
Q 008509 1 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM 80 (563)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (563)
|+++|++++|+||+++||||+|||++++++.+.+++++++..+ +
T Consensus 163 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~~------------------------------------~ 206 (262)
T PRK08140 163 LALLGEKLSAEQAEQWGLIWRVVDDAALADEAQQLAAHLATQP------------------------------------T 206 (262)
T ss_pred HHHcCCCcCHHHHHHcCCccEeeChHHHHHHHHHHHHHHHhCC------------------------------------H
Confidence 5789999999999999999999999999999999999998743 3
Q ss_pred hhHHHHHHHHHHhhccCchhhHHHHHHHHHHHhcCHHHHHHHHHHhhhhhhc
Q 008509 81 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATS 132 (563)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~~kr~~~ 132 (563)
.+...+|+.++.....+++++++.|...+..++.|+++++++.+|++||++.
T Consensus 207 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr~p~ 258 (262)
T PRK08140 207 RGLALIKQAMNASATNTLDAQLDLERDLQREAGRSADYAEGVSAFLEKRAPR 258 (262)
T ss_pred HHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCC
Confidence 5788899999988888899999999999999999999999999999988653
No 100
>PRK09076 enoyl-CoA hydratase; Provisional
Probab=99.21 E-value=4.3e-11 Score=119.03 Aligned_cols=96 Identities=21% Similarity=0.322 Sum_probs=87.5
Q ss_pred CccCCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCccchhccccCCCCChHHHHHHHHHHHHHHHhhCCCC
Q 008509 1 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM 80 (563)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (563)
|+|+|++++|+||+++||||+|||++++++.+.+++++++..+ +
T Consensus 159 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~------------------------------------~ 202 (258)
T PRK09076 159 MILCGERVDAATALRIGLVEEVVEKGEAREAALALAQKVANQS------------------------------------P 202 (258)
T ss_pred HHHcCCcCCHHHHHHCCCCceecCchhHHHHHHHHHHHHHhCC------------------------------------H
Confidence 5789999999999999999999999999999999999988753 3
Q ss_pred hhHHHHHHHHHHhhccCchhhHHHHHHHHHHHhcCHHHHHHHHHHhhhhhhc
Q 008509 81 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATS 132 (563)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~~kr~~~ 132 (563)
.++..+|++++.....++++.+..|...|..++.++++++++.+|++||+++
T Consensus 203 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~eg~~af~~kr~p~ 254 (258)
T PRK09076 203 SAVAACKTLIQAARNGPRAAALALERELFVDLFDTEDQREGVNAFLEKRAPQ 254 (258)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCC
Confidence 5888899999988777899999999999999999999999999999988654
No 101
>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated
Probab=99.21 E-value=3.8e-11 Score=119.61 Aligned_cols=96 Identities=25% Similarity=0.353 Sum_probs=88.1
Q ss_pred CccCCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCccchhccccCCCCChHHHHHHHHHHHHHHHhhCCCC
Q 008509 1 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM 80 (563)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (563)
|+++|++++|+||+++||||+|+|++++++.|.+++++++..+ +
T Consensus 161 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~------------------------------------~ 204 (260)
T PRK05809 161 LIYTGDMINAEEALRIGLVNKVVEPEKLMEEAKALANKIAANA------------------------------------P 204 (260)
T ss_pred HHHhCCCCCHHHHHHcCCCCcccChHHHHHHHHHHHHHHHhCC------------------------------------H
Confidence 5789999999999999999999999999999999999988743 3
Q ss_pred hhHHHHHHHHHHhhccCchhhHHHHHHHHHHHhcCHHHHHHHHHHhhhhhhc
Q 008509 81 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATS 132 (563)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~~kr~~~ 132 (563)
.+...+|++++.+...+++++++.|.+.+..++.|+++++++.+|+++|++.
T Consensus 205 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~egi~af~~~r~p~ 256 (260)
T PRK05809 205 IAVKLCKDAINRGMQVDIDTAVAIEAEDFGECFSTEDQTEGMTAFVEKREKN 256 (260)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCC
Confidence 5888999999998888899999999999999999999999999999998654
No 102
>PRK06127 enoyl-CoA hydratase; Provisional
Probab=99.21 E-value=4.1e-11 Score=119.90 Aligned_cols=96 Identities=15% Similarity=0.161 Sum_probs=87.5
Q ss_pred CccCCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCccchhccccCCCCChHHHHHHHHHHHHHHHhhCCCC
Q 008509 1 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM 80 (563)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (563)
|+|||++++|+||+++||||+|||++++++.+.++|++++..+ +
T Consensus 170 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~------------------------------------~ 213 (269)
T PRK06127 170 LFYTARRFDAAEALRIGLVHRVTAADDLETALADYAATIAGNA------------------------------------P 213 (269)
T ss_pred HHHcCCCCCHHHHHHcCCCCEeeCHHHHHHHHHHHHHHHHhCC------------------------------------H
Confidence 5789999999999999999999999999999999999988743 3
Q ss_pred hhHHHHHHHHHHhhccCchhhHHHHHHHHHHHhcCHHHHHHHHHHhhhhhhc
Q 008509 81 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATS 132 (563)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~~kr~~~ 132 (563)
.++..+|++++.....++++.++.|...+..++.|+++++++.+|++||++.
T Consensus 214 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~af~ekr~p~ 265 (269)
T PRK06127 214 LTLRAAKRAIAELLKDEPERDMAACQALVAACFDSEDYREGRAAFMEKRKPV 265 (269)
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcChHHHHHHHHHhcCCCCC
Confidence 5788899999988878899999999999999999999999999999998654
No 103
>PRK06563 enoyl-CoA hydratase; Provisional
Probab=99.21 E-value=3.8e-11 Score=119.25 Aligned_cols=96 Identities=21% Similarity=0.262 Sum_probs=87.3
Q ss_pred CccCCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCccchhccccCCCCChHHHHHHHHHHHHHHHhhCCCC
Q 008509 1 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM 80 (563)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (563)
|++||++++|+||+++||||+|||++++.+.|.+++++++..+ +
T Consensus 156 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~------------------------------------~ 199 (255)
T PRK06563 156 YLLTGDEFDAQEALRLGLVQEVVPPGEQLERAIELAERIARAA------------------------------------P 199 (255)
T ss_pred HHHcCCCcCHHHHHHcCCCcEeeCHHHHHHHHHHHHHHHHhcC------------------------------------H
Confidence 5789999999999999999999999999999999999998743 3
Q ss_pred hhHHHHHHHHHHhhccCchhhHHHHHHHHHHHhcCHHHHHHHHHHhhhhhhc
Q 008509 81 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATS 132 (563)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~~kr~~~ 132 (563)
.+...+|++++.....++.++++.|...+..++.++++++++.+|++||++.
T Consensus 200 ~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~ 251 (255)
T PRK06563 200 LGVQATLASARAAVREGEAAAAAQLPPELRPLFTSEDAKEGVQAFLERRPAR 251 (255)
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCC
Confidence 5788899999988778899999999999999999999999999999998754
No 104
>PRK08252 enoyl-CoA hydratase; Provisional
Probab=99.20 E-value=3.9e-11 Score=119.04 Aligned_cols=96 Identities=17% Similarity=0.163 Sum_probs=87.0
Q ss_pred CccCCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCccchhccccCCCCChHHHHHHHHHHHHHHHhhCCCC
Q 008509 1 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM 80 (563)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (563)
|+++|++++|+||+++||||+|||++++++.|.+++++++..+ +
T Consensus 155 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~------------------------------------~ 198 (254)
T PRK08252 155 LALTGDMLTAERAHELGLVNRLTEPGQALDAALELAERIAANG------------------------------------P 198 (254)
T ss_pred HHHcCCccCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhCC------------------------------------H
Confidence 5789999999999999999999999999999999999988743 3
Q ss_pred hhHHHHHHHHHHhhccCchhhHHHHHHHHHHHhcCHHHHHHHHHHhhhhhhc
Q 008509 81 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATS 132 (563)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~~kr~~~ 132 (563)
.+...+|++++.+...++++.++.|...+..++.++++++++.+|++||+++
T Consensus 199 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~eg~~af~~kr~p~ 250 (254)
T PRK08252 199 LAVAASKRIVVESGDWSEDEMFARQRELIAPVFTSADAKEGATAFAEKRAPV 250 (254)
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCC
Confidence 5888899999988777899999999999999999999999999999987643
No 105
>PRK06495 enoyl-CoA hydratase; Provisional
Probab=99.20 E-value=3.8e-11 Score=119.33 Aligned_cols=96 Identities=20% Similarity=0.241 Sum_probs=87.9
Q ss_pred CccCCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCccchhccccCCCCChHHHHHHHHHHHHHHHhhCCCC
Q 008509 1 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM 80 (563)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (563)
|+++|++++|+||+++||||+|||++++.+.+.+++++++..+ +
T Consensus 158 lll~g~~~~a~eA~~~GLv~~vv~~~~~~~~a~~~a~~l~~~~------------------------------------~ 201 (257)
T PRK06495 158 MMLTGYRVPAAELYRRGVIEACLPPEELMPEAMEIAREIASKS------------------------------------P 201 (257)
T ss_pred HHHcCCeeCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCC------------------------------------H
Confidence 5789999999999999999999999999999999999998753 3
Q ss_pred hhHHHHHHHHHHhhccCchhhHHHHHHHHHHHhcCHHHHHHHHHHhhhhhhc
Q 008509 81 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATS 132 (563)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~~kr~~~ 132 (563)
.+...+|++++.....++.++++.|...+..++.|++.++++.+|++||++.
T Consensus 202 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~egi~af~~kr~p~ 253 (257)
T PRK06495 202 LATRLAKDALNTIENMSLRDGYRYEQDITAKLAKTEDAKEAQRAFLEKRPPV 253 (257)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChHHHHHHHHHhccCCCC
Confidence 5788899999988888899999999999999999999999999999998754
No 106
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=99.20 E-value=1.5e-09 Score=112.76 Aligned_cols=167 Identities=11% Similarity=0.084 Sum_probs=106.6
Q ss_pred ceeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCC-CC---HHHHHhhhcCeeeecCcc
Q 008509 147 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGK-LT---QDKANNALKMLKGVLDYS 222 (563)
Q Consensus 147 ~~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~-~~---~~~~~~~~~~i~~~~~~~ 222 (563)
++||+|||+|.||..+|..|+++|++|+++|+++. .+... +.|. +. ..+......++..+++.+
T Consensus 2 ~mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~-~~~~~-----------~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (341)
T PRK08229 2 MARICVLGAGSIGCYLGGRLAAAGADVTLIGRARI-GDELR-----------AHGLTLTDYRGRDVRVPPSAIAFSTDPA 69 (341)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHH-HHHHH-----------hcCceeecCCCcceecccceeEeccChh
Confidence 46899999999999999999999999999999653 22211 1121 00 000001112344566667
Q ss_pred cccCCCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCCCCCH-HHHhhhccCCCceeecccCC-----CCCC--CCe
Q 008509 223 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL-NIVGEKTSSQDRIIGAHFFS-----PAHV--MPL 294 (563)
Q Consensus 223 ~l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS~l~i-~~la~~~~~~~r~ig~hf~~-----P~~~--~~l 294 (563)
.+.++|+||.|++... ..+++.++.+.++++++|++.++++.. ..+.+.+.....+.|.+++. |-.. ...
T Consensus 70 ~~~~~D~vil~vk~~~--~~~~~~~l~~~~~~~~iii~~~nG~~~~~~l~~~~~~~~~~~g~~~~~~~~~~pg~~~~~~~ 147 (341)
T PRK08229 70 ALATADLVLVTVKSAA--TADAAAALAGHARPGAVVVSFQNGVRNADVLRAALPGATVLAGMVPFNVISRGPGAFHQGTS 147 (341)
T ss_pred hccCCCEEEEEecCcc--hHHHHHHHHhhCCCCCEEEEeCCCCCcHHHHHHhCCCCcEEEEEEEEEEEecCCceEEecCC
Confidence 7889999999998653 467889999999999988888777764 45666554322334444432 2110 000
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHHhCCceEEecCcch
Q 008509 295 LEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG 330 (563)
Q Consensus 295 vEiv~~~~t~~~~~~~~~~l~~~lGk~~v~~~d~~G 330 (563)
-++.-+. .+.++.+.++++..|....+++|..+
T Consensus 148 g~l~~~~---~~~~~~~~~~l~~~g~~~~~~~di~~ 180 (341)
T PRK08229 148 GALAIEA---SPALRPFAAAFARAGLPLVTHEDMRA 180 (341)
T ss_pred CceEecC---CchHHHHHHHHHhcCCCceecchhHH
Confidence 0111121 24467888899998988888877544
No 107
>PRK08818 prephenate dehydrogenase; Provisional
Probab=99.20 E-value=2.2e-10 Score=118.35 Aligned_cols=137 Identities=13% Similarity=0.102 Sum_probs=101.7
Q ss_pred eeEEEEcC-CcchHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCc-ccc
Q 008509 148 RKVAVIGG-GLMGSGIATAHILN-NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 224 (563)
Q Consensus 148 ~kv~ViGa-G~mG~~iA~~la~~-G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 224 (563)
++|+|||. |.||+++|..|.+. |++|+.+|++.+. ..+. +.+
T Consensus 5 ~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~~-----------------------------------~~~~~~~v 49 (370)
T PRK08818 5 PVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADPG-----------------------------------SLDPATLL 49 (370)
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCccc-----------------------------------cCCHHHHh
Confidence 68999999 99999999999864 9999999985211 1111 457
Q ss_pred cCCCEEEEecCCChHHHHHHHHHHHhh---CCCCeEEEecCCCC--CHHHHhhhccCCCceeecccCCCCCCC-----Ce
Q 008509 225 KDVDMVIEAVIESVPLKQKIFSELEKA---CPPHCILATNTSTI--DLNIVGEKTSSQDRIIGAHFFSPAHVM-----PL 294 (563)
Q Consensus 225 ~~aDlVieav~e~~~~k~~v~~~l~~~---~~~~~ii~sntS~l--~i~~la~~~~~~~r~ig~hf~~P~~~~-----~l 294 (563)
++||+||.|+|.. ...+++.++.++ ++++++|++.+|+- ++..+ .....+|+|.||+..++.. ..
T Consensus 50 ~~aDlVilavPv~--~~~~~l~~l~~~~~~l~~~~iVtDVgSvK~~i~~~~---~~~~~~fVG~HPMaG~E~s~lf~g~~ 124 (370)
T PRK08818 50 QRADVLIFSAPIR--HTAALIEEYVALAGGRAAGQLWLDVTSIKQAPVAAM---LASQAEVVGLHPMTAPPKSPTLKGRV 124 (370)
T ss_pred cCCCEEEEeCCHH--HHHHHHHHHhhhhcCCCCCeEEEECCCCcHHHHHHH---HhcCCCEEeeCCCCCCCCCcccCCCe
Confidence 8999999999965 455888888876 78999999888865 22333 2333479999999877533 33
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHHhCCceEEec
Q 008509 295 LEIVRTERTSAQVILDLMTVGKIIKKVPVVVG 326 (563)
Q Consensus 295 vEiv~~~~t~~~~~~~~~~l~~~lGk~~v~~~ 326 (563)
+-+++. ...+.++.++++++.+|..++.+.
T Consensus 125 ~iltp~--~~~~~~~~v~~l~~~~Ga~v~~~~ 154 (370)
T PRK08818 125 MVVCEA--RLQHWSPWVQSLCSALQAECVYAT 154 (370)
T ss_pred EEEeCC--CchhHHHHHHHHHHHcCCEEEEcC
Confidence 334444 445557889999999999988884
No 108
>PRK09674 enoyl-CoA hydratase-isomerase; Provisional
Probab=99.20 E-value=5.5e-11 Score=118.06 Aligned_cols=96 Identities=21% Similarity=0.265 Sum_probs=87.7
Q ss_pred CccCCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCccchhccccCCCCChHHHHHHHHHHHHHHHhhCCCC
Q 008509 1 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM 80 (563)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (563)
|+++|++++|+||+++||||+|||++++.+.|.+++++++..+ +
T Consensus 156 l~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l~~~~------------------------------------~ 199 (255)
T PRK09674 156 MVLTGESITAQQAQQAGLVSEVFPPELTLERALQLASKIARHS------------------------------------P 199 (255)
T ss_pred HHHcCCccCHHHHHHcCCCcEecChHHHHHHHHHHHHHHHhCC------------------------------------H
Confidence 5789999999999999999999999999999999999998743 3
Q ss_pred hhHHHHHHHHHHhhccCchhhHHHHHHHHHHHhcCHHHHHHHHHHhhhhhhc
Q 008509 81 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATS 132 (563)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~~kr~~~ 132 (563)
.+...+|+.++.+...+++++++.|.+.+..++.++++++++.+|++||+++
T Consensus 200 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~i~af~~kr~p~ 251 (255)
T PRK09674 200 LALRAAKQALRQSQEVDLQAGLAQERQLFTLLAATEDRHEGISAFLEKRTPD 251 (255)
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCC
Confidence 5888899999988888899999999999999999999999999999987654
No 109
>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional
Probab=99.19 E-value=4.5e-11 Score=119.95 Aligned_cols=98 Identities=16% Similarity=0.098 Sum_probs=89.0
Q ss_pred CccCCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCccchhccccCCCCChHHHHHHHHHHHHHHHhhCCCC
Q 008509 1 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM 80 (563)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (563)
|+|||++++|+||+++||||+|||.+++++.|.+++++++..+ +
T Consensus 172 llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~------------------------------------~ 215 (278)
T PLN03214 172 LLLRGRLVRPAEAKQLGLIDEVVPAAALMEAAASAMERALKLP------------------------------------S 215 (278)
T ss_pred HHHcCCccCHHHHHHcCCCcEecChHHHHHHHHHHHHHHHcCC------------------------------------H
Confidence 5799999999999999999999999999999999999988743 2
Q ss_pred hhHHHHHHHHHHhhccCchhhHHHHHHHHHHHhcCHHHHHHHHHHhhhhhhccC
Q 008509 81 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 134 (563)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~~kr~~~k~ 134 (563)
.+...+|++++.....+++++++.|.+.+..++.|+++++++.+|++|.+.+|.
T Consensus 216 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~egi~aflek~~~~~~ 269 (278)
T PLN03214 216 AARAATKALLREEFSAAWEAYYEEEAKGGWKMLSEPSIIKALGGVMERLSSGKE 269 (278)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhccc
Confidence 578889999998888889999999999999999999999999999999876664
No 110
>PRK07468 enoyl-CoA hydratase; Provisional
Probab=99.19 E-value=5.4e-11 Score=118.60 Aligned_cols=96 Identities=16% Similarity=0.135 Sum_probs=85.8
Q ss_pred CccCCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCccchhccccCCCCChHHHHHHHHHHHHHHHhhCCCC
Q 008509 1 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM 80 (563)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (563)
|++||++++|+||+++||||+|||++++.+.+.++++++++.+ +
T Consensus 163 lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~~~~~a~~l~~~~------------------------------------~ 206 (262)
T PRK07468 163 VFMSARLFDAEEAVRLGLLSRVVPAERLDAAVEAEVTPYLSCA------------------------------------P 206 (262)
T ss_pred HHHhCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhcC------------------------------------H
Confidence 5789999999999999999999999999999999999988743 3
Q ss_pred hhHHHHHHHHHHhhccCchhhHHHHHHHHHHHhcCHHHHHHHHHHhhhhhhc
Q 008509 81 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATS 132 (563)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~~kr~~~ 132 (563)
.+...+|++++.......+++++.|...+..++.|+++++++.+|++||++.
T Consensus 207 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d~~e~~~af~~kr~~~ 258 (262)
T PRK07468 207 GAVAAAKALVRALGAPIDEAVIDATIEALADTWETEEAREGIAAFFDKRAPA 258 (262)
T ss_pred HHHHHHHHHHHhhhccChHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCC
Confidence 5788899999877655678899999999999999999999999999998754
No 111
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=99.19 E-value=4.1e-11 Score=121.95 Aligned_cols=122 Identities=19% Similarity=0.294 Sum_probs=90.4
Q ss_pred EEEEcCCcchHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCcccccCCC
Q 008509 150 VAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVD 228 (563)
Q Consensus 150 v~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aD 228 (563)
|+|||+|.||.++|..++..|+ +|+++|++++.++ +... ...+ .. .......++..++|++++++||
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~-g~~~--dl~~-~~--------~~~~~~~~I~~t~d~~~l~dAD 68 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQ-GKAL--DISQ-AA--------PILGSDTKVTGTNDYEDIAGSD 68 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHH-HHHH--HHHH-hh--------hhcCCCeEEEEcCCHHHhCCCC
Confidence 6899999999999999999887 9999999987542 2210 1110 00 0111123577777889999999
Q ss_pred EEEEec--------------CCChHHHHHHHHHHHhhCCCCe-EEEecCCCCCHHHHhhhccC-CCceeec
Q 008509 229 MVIEAV--------------IESVPLKQKIFSELEKACPPHC-ILATNTSTIDLNIVGEKTSS-QDRIIGA 283 (563)
Q Consensus 229 lVieav--------------~e~~~~k~~v~~~l~~~~~~~~-ii~sntS~l~i~~la~~~~~-~~r~ig~ 283 (563)
+||+++ +++..+++++++++.++++++. |++||.+.+....+...... |.|++|+
T Consensus 69 iVIit~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP~di~t~~~~~~s~~~~~rviGl 139 (300)
T cd01339 69 VVVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPLDVMTYVAYKASGFPRNRVIGM 139 (300)
T ss_pred EEEEecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCHHHEEEe
Confidence 999866 6789999999999999998877 45688887777777666654 5678776
No 112
>PRK05981 enoyl-CoA hydratase; Provisional
Probab=99.18 E-value=5.3e-11 Score=119.00 Aligned_cols=96 Identities=16% Similarity=0.134 Sum_probs=87.1
Q ss_pred CccCCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCccchhccccCCCCChHHHHHHHHHHHHHHHhhCCCC
Q 008509 1 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM 80 (563)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (563)
|++||++++|+||+++||||+|+|++++++.+.+++++++..+ +
T Consensus 167 l~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l~~~~------------------------------------~ 210 (266)
T PRK05981 167 LSLLGEKLPAETALQWGLVNRVVDDAELMAEAMKLAHELANGP------------------------------------T 210 (266)
T ss_pred HHHhCCCcCHHHHHHcCCceEeeCHhHHHHHHHHHHHHHHcCC------------------------------------H
Confidence 5789999999999999999999999999999999999988743 2
Q ss_pred hhHHHHHHHHHHhhccCchhhHHHHHHHHHHHhcCHHHHHHHHHHhhhhhhc
Q 008509 81 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATS 132 (563)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~~kr~~~ 132 (563)
.+...+|++++.....+++++++.|...+..++.|+++++++.+|++||+++
T Consensus 211 ~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~s~d~~e~~~af~~kr~~~ 262 (266)
T PRK05981 211 VALGLIRKLYWDSPENDFEEQLNLEREAQRIAGKTEDFKEGVGAFLQKRPAQ 262 (266)
T ss_pred HHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCC
Confidence 4788899999888778899999999999999999999999999999998754
No 113
>PRK07657 enoyl-CoA hydratase; Provisional
Probab=99.18 E-value=6.3e-11 Score=118.00 Aligned_cols=96 Identities=18% Similarity=0.214 Sum_probs=87.6
Q ss_pred CccCCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCccchhccccCCCCChHHHHHHHHHHHHHHHhhCCCC
Q 008509 1 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM 80 (563)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (563)
|+++|++++|+||+++||||++||++++++.+.+++++++..+ +
T Consensus 161 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~------------------------------------~ 204 (260)
T PRK07657 161 LIYTGRRISAQEAKEIGLVEFVVPAHLLEEKAIEIAEKIASNG------------------------------------P 204 (260)
T ss_pred HHHhCCCCCHHHHHHcCCCCeecCHHHHHHHHHHHHHHHHhCC------------------------------------H
Confidence 5789999999999999999999999999999999999988743 3
Q ss_pred hhHHHHHHHHHHhhccCchhhHHHHHHHHHHHhcCHHHHHHHHHHhhhhhhc
Q 008509 81 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATS 132 (563)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~~kr~~~ 132 (563)
.|...+|+.++.....++++++..|...+..++.|+++++++.+|+++|++.
T Consensus 205 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~~r~~~ 256 (260)
T PRK07657 205 IAVRQAKEAISNGIQVDLHTGLQIEKQAYEGTIPTKDRLEGLQAFKEKRKPM 256 (260)
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcCHhHHHHHHHHhcCCCCC
Confidence 5888999999988888899999999999999999999999999999988653
No 114
>PRK09245 enoyl-CoA hydratase; Provisional
Probab=99.17 E-value=6.5e-11 Score=118.37 Aligned_cols=96 Identities=21% Similarity=0.197 Sum_probs=87.4
Q ss_pred CccCCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCccchhccccCCCCChHHHHHHHHHHHHHHHhhCCCC
Q 008509 1 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM 80 (563)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (563)
|+++|++++|+||+++||||+|||++++++.+.+++++++..+ +
T Consensus 167 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~------------------------------------~ 210 (266)
T PRK09245 167 MAFTGDAIDAATALEWGLVSRVVPADQLLPAARALAERIAANP------------------------------------P 210 (266)
T ss_pred HHHcCCCcCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCC------------------------------------H
Confidence 5789999999999999999999999999999999999998853 3
Q ss_pred hhHHHHHHHHHHhhccCchhhHHHHHHHHHHHhcCHHHHHHHHHHhhhhhhc
Q 008509 81 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATS 132 (563)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~~kr~~~ 132 (563)
.+...+|++++.....++++.++.|...+..++.|+++++++.+|++||++.
T Consensus 211 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~ 262 (266)
T PRK09245 211 HALRLTKRLLREGQHASLDTLLELSAAYQALAHHTADHREAVDAFLEKRPPV 262 (266)
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCHhHHHHHHHHHcCCCCC
Confidence 5788899999988778899999999999999999999999999999988653
No 115
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.17 E-value=5.5e-10 Score=112.22 Aligned_cols=153 Identities=14% Similarity=0.044 Sum_probs=116.9
Q ss_pred ceeEEEEcCCcchHHHHHHHHhCC----CeEEEEeCCHHH-HHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCc
Q 008509 147 VRKVAVIGGGLMGSGIATAHILNN----IYVVLKEVNSEY-LLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY 221 (563)
Q Consensus 147 ~~kv~ViGaG~mG~~iA~~la~~G----~~V~l~d~~~~~-~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 221 (563)
|++|+|||+|.||.+|+..|.++| ++|++|+++++. ++... ... ..+..+.+.
T Consensus 1 m~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~-----------~~~-----------~~~~~~~~~ 58 (277)
T PRK06928 1 MEKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLY-----------DKY-----------PTVELADNE 58 (277)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHH-----------HHc-----------CCeEEeCCH
Confidence 368999999999999999999998 789999987532 22210 000 012233444
Q ss_pred -ccccCCCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhhhccCCCceeecccCCCCCCCCeEEEE-e
Q 008509 222 -SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIV-R 299 (563)
Q Consensus 222 -~~l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS~l~i~~la~~~~~~~r~ig~hf~~P~~~~~lvEiv-~ 299 (563)
+.+.++|+||.|+|.+ .-.+++.++.+.++++++|+|...++++.+|.+.++. .+++-+.|.-|......+..+ .
T Consensus 59 ~e~~~~aDvVilavpp~--~~~~vl~~l~~~l~~~~~ivS~~aGi~~~~l~~~~~~-~~vvR~MPN~~~~~g~g~t~~~~ 135 (277)
T PRK06928 59 AEIFTKCDHSFICVPPL--AVLPLLKDCAPVLTPDRHVVSIAAGVSLDDLLEITPG-LQVSRLIPSLTSAVGVGTSLVAH 135 (277)
T ss_pred HHHHhhCCEEEEecCHH--HHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCC-CCEEEEeCccHHHHhhhcEEEec
Confidence 4578999999999844 4568888888888888888899999999999997753 478888887787766666655 4
Q ss_pred CCCCCHHHHHHHHHHHHHhCCceEE
Q 008509 300 TERTSAQVILDLMTVGKIIKKVPVV 324 (563)
Q Consensus 300 ~~~t~~~~~~~~~~l~~~lGk~~v~ 324 (563)
++..+++..+.+..++..+|+...+
T Consensus 136 ~~~~~~~~~~~v~~l~~~~G~~~~v 160 (277)
T PRK06928 136 AETVNEANKSRLEETLSHFSHVMTI 160 (277)
T ss_pred CCCCCHHHHHHHHHHHHhCCCEEEE
Confidence 5677889999999999999987755
No 116
>PRK07511 enoyl-CoA hydratase; Provisional
Probab=99.17 E-value=6.6e-11 Score=117.91 Aligned_cols=95 Identities=17% Similarity=0.149 Sum_probs=86.6
Q ss_pred CccCCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCccchhccccCCCCChHHHHHHHHHHHHHHHhhCCCC
Q 008509 1 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM 80 (563)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (563)
|+|||++++|+||+++||||+|||++++++.+.+++++++..+ +
T Consensus 162 l~ltg~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l~~~~------------------------------------~ 205 (260)
T PRK07511 162 LLLEGKPISAERLHALGVVNRLAEPGQALAEALALADQLAAGS------------------------------------P 205 (260)
T ss_pred HHHhCCCCCHHHHHHcCCccEeeCchHHHHHHHHHHHHHHhCC------------------------------------H
Confidence 5789999999999999999999999999999999999987743 2
Q ss_pred hhHHHHHHHHHHhhccCchhhHHHHHHHHHHHhcCHHHHHHHHHHhhhhhh
Q 008509 81 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRAT 131 (563)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~~kr~~ 131 (563)
.+...+|+.++.+...+++++++.|...|..++.++++++++++|+++|++
T Consensus 206 ~~~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~i~~f~~~r~~ 256 (260)
T PRK07511 206 NALARIKSLIADAPEATLAAQLEAERDHFVASLHHADALEGIAAFLEKRAP 256 (260)
T ss_pred HHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhccCCC
Confidence 478888999998888889999999999999999999999999999998864
No 117
>PRK05995 enoyl-CoA hydratase; Provisional
Probab=99.17 E-value=7.7e-11 Score=117.56 Aligned_cols=96 Identities=17% Similarity=0.175 Sum_probs=86.5
Q ss_pred CccCCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCccchhccccCCCCChHHHHHHHHHHHHHHHhhCCCC
Q 008509 1 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM 80 (563)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (563)
|+|+|++++|+||+++||||+|||++++.+.+.+++++++..+ +
T Consensus 162 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~------------------------------------~ 205 (262)
T PRK05995 162 YFLTAERFDAAEALRLGLVHEVVPAEALDAKVDELLAALVANS------------------------------------P 205 (262)
T ss_pred HHHcCCccCHHHHHHcCCCCeecCHHHHHHHHHHHHHHHHhCC------------------------------------H
Confidence 5789999999999999999999999999999999999998743 3
Q ss_pred hhHHHHHHHHHHhhccCchhh-HHHHHHHHHHHhcCHHHHHHHHHHhhhhhhc
Q 008509 81 PQHQACLDVIEEGIVHGGYSG-VLKEAKVFKELVMLDTSRGLVHVFFAQRATS 132 (563)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~-l~~E~~~f~~l~~s~~~~~~~~aF~~kr~~~ 132 (563)
.+...+|++++.....+++++ ++.|...+..++.|+++++++.+|++||++.
T Consensus 206 ~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~af~~kr~p~ 258 (262)
T PRK05995 206 QAVRAGKRLVRDVAGRPIDAALIADTASRIALIRATEEAREGVAAFLEKRKPA 258 (262)
T ss_pred HHHHHHHHHHHhhhcCChhhHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCC
Confidence 578889999998877788888 8899999999999999999999999998754
No 118
>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase
Probab=99.17 E-value=7.5e-11 Score=118.39 Aligned_cols=96 Identities=22% Similarity=0.168 Sum_probs=86.4
Q ss_pred CccCCCCCCHHHHHhCCCcceecCC-chHHHHHHHHHHhhhccCCccchhccccCCCCChHHHHHHHHHHHHHHHhhCCC
Q 008509 1 MMLLSKSITSEEGWKLGLIDAVVTS-EELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 79 (563)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~-~~l~~~A~~~a~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (563)
|+|||++++|+||+++||||+|||+ +++.+.+.+++++++..+
T Consensus 175 l~ltg~~~~a~eA~~~GLv~~vv~~~~~l~~~~~~~a~~ia~~~------------------------------------ 218 (275)
T PLN02664 175 LALTGRRFSGSEAKELGLVSRVFGSKEDLDEGVRLIAEGIAAKS------------------------------------ 218 (275)
T ss_pred HHHhCCCCCHHHHHHcCCCceeeCChhHHHHHHHHHHHHHHhCC------------------------------------
Confidence 5789999999999999999999985 889999999999998753
Q ss_pred ChhHHHHHHHHHHhhccCchhhHHHHHHHHHHHhcCHHHHHHHHHHhhhhhhc
Q 008509 80 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATS 132 (563)
Q Consensus 80 ~~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~~kr~~~ 132 (563)
+.+...+|++++.....+++++++.|...+..++.|+++++++.+|++||++.
T Consensus 219 p~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~ekr~p~ 271 (275)
T PLN02664 219 PLAVTGTKAVLLRSRELSVEQGLDYVATWNSAMLVSDDLNEAVSAQIQKRKPV 271 (275)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccChhHHHHHHHHhccCCCC
Confidence 35788899999988778899999999999999999999999999999998654
No 119
>PRK06494 enoyl-CoA hydratase; Provisional
Probab=99.17 E-value=6.5e-11 Score=117.82 Aligned_cols=95 Identities=22% Similarity=0.278 Sum_probs=85.3
Q ss_pred CccCCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCccchhccccCCCCChHHHHHHHHHHHHHHHhhCCCC
Q 008509 1 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM 80 (563)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (563)
|++||++++|+||+++||||+|||++++++.+.+++++++..+ +
T Consensus 158 lll~g~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~------------------------------------~ 201 (259)
T PRK06494 158 MILTGRRVTAREGLELGFVNEVVPAGELLAAAERWADDILACS------------------------------------P 201 (259)
T ss_pred HHHcCCcCCHHHHHHcCCCcEecCHhHHHHHHHHHHHHHHhcC------------------------------------H
Confidence 5789999999999999999999999999999999999998753 3
Q ss_pred hhHHHHHHHHHHhhccCchhhHHHH--HHHHHHHhcCHHHHHHHHHHhhhhhh
Q 008509 81 PQHQACLDVIEEGIVHGGYSGVLKE--AKVFKELVMLDTSRGLVHVFFAQRAT 131 (563)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E--~~~f~~l~~s~~~~~~~~aF~~kr~~ 131 (563)
.+...+|++++.....+++++++.| ...+..++.|+++++++.+|++||++
T Consensus 202 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~eg~~af~~kr~p 254 (259)
T PRK06494 202 LSIRASKQAVYRGLEVSLEEAITAQRDYPAVEARRASQDYIEGPKAFAEKRPP 254 (259)
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHccCCC
Confidence 5888899999988778899999999 56788999999999999999998764
No 120
>PRK06142 enoyl-CoA hydratase; Provisional
Probab=99.17 E-value=7.5e-11 Score=118.27 Aligned_cols=96 Identities=19% Similarity=0.201 Sum_probs=86.5
Q ss_pred CccCCCCCCHHHHHhCCCcceecCC-chHHHHHHHHHHhhhccCCccchhccccCCCCChHHHHHHHHHHHHHHHhhCCC
Q 008509 1 MMLLSKSITSEEGWKLGLIDAVVTS-EELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 79 (563)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~-~~l~~~A~~~a~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (563)
|+++|++++|+||+++||||+|||+ +++++.+.+++++++..+
T Consensus 173 l~l~g~~~~a~eA~~~GLv~~vv~~~~~l~~~a~~~a~~ia~~~------------------------------------ 216 (272)
T PRK06142 173 LALTGRDIDAAEAEKIGLVNRVYDDADALLAAAHATAREIAAKS------------------------------------ 216 (272)
T ss_pred HHHhCCCcCHHHHHHcCCccEecCCHHHHHHHHHHHHHHHHhCC------------------------------------
Confidence 5789999999999999999999986 889999999999998743
Q ss_pred ChhHHHHHHHHHHhhccCchhhHHHHHHHHHHHhcCHHHHHHHHHHhhhhhhc
Q 008509 80 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATS 132 (563)
Q Consensus 80 ~~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~~kr~~~ 132 (563)
+.+...+|+.++.....+++++++.|...+..++.|+++++++.+|+++|+++
T Consensus 217 ~~a~~~~K~~l~~~~~~~l~~~~~~~~~~~~~~~~~~d~~egv~af~~kr~p~ 269 (272)
T PRK06142 217 PLAVRGTKEVLDYMRDHRVADGLRYVATWNAAMLPSKDLTEAIAAHMEKRPPE 269 (272)
T ss_pred HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCccHHHHHHHHhcCCCCC
Confidence 35788899999988778899999999999999999999999999999988643
No 121
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.16 E-value=1.8e-09 Score=107.57 Aligned_cols=179 Identities=11% Similarity=0.077 Sum_probs=118.9
Q ss_pred eEEEEcCCcchHHHHHHHHhCCCe---EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCc-ccc
Q 008509 149 KVAVIGGGLMGSGIATAHILNNIY---VVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 224 (563)
Q Consensus 149 kv~ViGaG~mG~~iA~~la~~G~~---V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 224 (563)
+|+|||+|.||.+|+..|.+.|++ |.++++++++.+...+ .. .....+.+. +.+
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~-----------~~-----------~~~~~~~~~~~~~ 59 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAE-----------RF-----------PKVRIAKDNQAVV 59 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHH-----------Hc-----------CCceEeCCHHHHH
Confidence 799999999999999999999864 5789999887654321 00 012233444 356
Q ss_pred cCCCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhhhccCCCceeecccCCCCCCCCeEEEEeCCCCC
Q 008509 225 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTS 304 (563)
Q Consensus 225 ~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS~l~i~~la~~~~~~~r~ig~hf~~P~~~~~lvEiv~~~~t~ 304 (563)
.+||+||.|++. +...+++.++. +.++.+++|..+++++..+...+....+++-.||..|.....-+..+.. +
T Consensus 60 ~~aDvVilav~p--~~~~~vl~~l~--~~~~~~vis~~ag~~~~~l~~~~~~~~~~~r~~P~~~~a~~~g~t~~~~---~ 132 (258)
T PRK06476 60 DRSDVVFLAVRP--QIAEEVLRALR--FRPGQTVISVIAATDRAALLEWIGHDVKLVRAIPLPFVAERKGVTAIYP---P 132 (258)
T ss_pred HhCCEEEEEeCH--HHHHHHHHHhc--cCCCCEEEEECCCCCHHHHHHHhCCCCCEEEECCCChhhhCCCCeEecC---C
Confidence 889999999994 33467777662 4677888888889999999988765556777788766654333344332 1
Q ss_pred HHHHHHHHHHHHHhCCceEEecC--cch------hhhHHHHHHHHHHHHHHH-HCCCCHHHHHHHH
Q 008509 305 AQVILDLMTVGKIIKKVPVVVGN--CTG------FAVNRAFFPYSQSARLLV-SLGVDVFRIDSAI 361 (563)
Q Consensus 305 ~~~~~~~~~l~~~lGk~~v~~~d--~~G------fi~nRl~~~~~~Ea~~l~-~~G~~~~~ID~a~ 361 (563)
.+.++++++.+|..+.+..+ .+. +..+ + +.++.++..+. ..|+++++.-+++
T Consensus 133 ---~~~~~~l~~~lG~~~~~~~e~~~d~~~a~~s~~a~-~-~~~~~~~~~~~~~~Gl~~~~a~~~~ 193 (258)
T PRK06476 133 ---DPFVAALFDALGTAVECDSEEEYDLLAAASALMAT-Y-FGILETATGWLEEQGLKRQKARAYL 193 (258)
T ss_pred ---HHHHHHHHHhcCCcEEECChHhccceeehhccHHH-H-HHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 25788999999988764321 111 1111 1 22444554443 4588887776665
No 122
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.16 E-value=2.4e-09 Score=108.48 Aligned_cols=198 Identities=19% Similarity=0.260 Sum_probs=129.2
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHH----HHHHHHHHHcCCCCHHHHHhhhcCeeeecCcc-
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI----EANVRGLVTRGKLTQDKANNALKMLKGVLDYS- 222 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i----~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~- 222 (563)
+||+|||.|.+|...+.+|+..||+|+.+|+++++++...+.. +..++.+++++..+ .|+++|+|++
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~--------gRl~fTtd~~~ 72 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLAS--------GRLRFTTDYEE 72 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhcccc--------CcEEEEcCHHH
Confidence 5899999999999999999999999999999999999876442 33444444443221 3689999995
Q ss_pred cccCCCEEEEecCCC--------hHHHHHHHHHHHhhCCCCeEEEecCCCCCHH---HHhhhcc--CCCc-e-eec----
Q 008509 223 EFKDVDMVIEAVIES--------VPLKQKIFSELEKACPPHCILATNTSTIDLN---IVGEKTS--SQDR-I-IGA---- 283 (563)
Q Consensus 223 ~l~~aDlVieav~e~--------~~~k~~v~~~l~~~~~~~~ii~sntS~l~i~---~la~~~~--~~~r-~-ig~---- 283 (563)
+++++|+++.||+.+ +.....+.+++.++++..++++ +-||.|+. .+...+. .+.+ | +.+
T Consensus 73 a~~~adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV-~KSTVPvGt~~~v~~~i~~~~~~~~f~v~~NPEF 151 (414)
T COG1004 73 AVKDADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVV-IKSTVPVGTTEEVRAKIREENSGKDFEVASNPEF 151 (414)
T ss_pred HHhcCCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEE-EcCCCCCCchHHHHHHHHhhcccCCceEecChHH
Confidence 789999999999753 3345567788888888876654 46677654 3332221 1111 0 111
Q ss_pred --------ccCCCCCCCCeEEEEeCCCCCHHHHHHHHHHHHHh--CCceEEecCc-----chhhhHHHHH---HHHHHHH
Q 008509 284 --------HFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKII--KKVPVVVGNC-----TGFAVNRAFF---PYSQSAR 345 (563)
Q Consensus 284 --------hf~~P~~~~~lvEiv~~~~t~~~~~~~~~~l~~~l--Gk~~v~~~d~-----~Gfi~nRl~~---~~~~Ea~ 345 (563)
.|++|.+ .|+.. . ++.+.+.+.+++..+ ...|++.-+. -.+..|-+++ .++||..
T Consensus 152 LREG~Av~D~~~PdR-----IViG~-~-~~~a~~~~~ely~~~~~~~~p~l~t~~~~AE~IKyaaNafLAtKIsFiNEia 224 (414)
T COG1004 152 LREGSAVYDFLYPDR-----IVIGV-R-SERAAAVLRELYAPFLRQDVPILFTDLREAELIKYAANAFLATKISFINEIA 224 (414)
T ss_pred hcCcchhhhccCCCe-----EEEcc-C-ChhHHHHHHHHHhhhhhcCCCEEEecchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1233432 23333 2 223555555565443 5566665332 2244566654 5789988
Q ss_pred HHHHC-CCCHHHHHHHH
Q 008509 346 LLVSL-GVDVFRIDSAI 361 (563)
Q Consensus 346 ~l~~~-G~~~~~ID~a~ 361 (563)
.+.+. |++..+|-.++
T Consensus 225 ~ice~~g~D~~~V~~gI 241 (414)
T COG1004 225 NICEKVGADVKQVAEGI 241 (414)
T ss_pred HHHHHhCCCHHHHHHHc
Confidence 77765 88888887765
No 123
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.16 E-value=5.3e-09 Score=105.53 Aligned_cols=200 Identities=19% Similarity=0.212 Sum_probs=129.6
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHH--------HHHHHHHHHHcCCCCHHHHHhhhcCeeeec
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT--------IEANVRGLVTRGKLTQDKANNALKMLKGVL 219 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~--------i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~ 219 (563)
.+|+|||+|.+|-.+|..++++|++|+.+|+|+.+++..... ....+...++.| +++.|+
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g------------~lraTt 77 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESG------------KLRATT 77 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcC------------CceEec
Confidence 789999999999999999999999999999999998875422 112233333333 578899
Q ss_pred CcccccCCCEEEEecCCC--------hHHHHHHHHHHHhhCCCCeEEEecCCCCC--HHHHhhh-------ccCCCceee
Q 008509 220 DYSEFKDVDMVIEAVIES--------VPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEK-------TSSQDRIIG 282 (563)
Q Consensus 220 ~~~~l~~aDlVieav~e~--------~~~k~~v~~~l~~~~~~~~ii~sntS~l~--i~~la~~-------~~~~~r~ig 282 (563)
|.+.++.||++|.|||.. +....+..+.|.++++++.+++.-+++.| .+++..- +..+..|.-
T Consensus 78 d~~~l~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df~l 157 (436)
T COG0677 78 DPEELKECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDFYL 157 (436)
T ss_pred ChhhcccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCcccceeeE
Confidence 999999999999999853 33445566789999999987764322222 2333322 222333322
Q ss_pred cccCCCCCCC---CeEEEEeCCC----CCHHHHHHHHHHHHHhCCceEEecCc-chh---hhH----HHHHHHHHHHHHH
Q 008509 283 AHFFSPAHVM---PLLEIVRTER----TSAQVILDLMTVGKIIKKVPVVVGNC-TGF---AVN----RAFFPYSQSARLL 347 (563)
Q Consensus 283 ~hf~~P~~~~---~lvEiv~~~~----t~~~~~~~~~~l~~~lGk~~v~~~d~-~Gf---i~n----Rl~~~~~~Ea~~l 347 (563)
.| .|-+.+ .+.|++..++ .+++..+.+..+.+.+=+..+.+.+. ... +.. -+-.++.||...+
T Consensus 158 ay--sPERv~PG~~~~el~~~~kVIgG~tp~~~e~a~~lY~~iv~~~~~vts~~tAEm~Kl~EN~fRdVNIALaNElali 235 (436)
T COG0677 158 AY--SPERVLPGNVLKELVNNPKVIGGVTPKCAELAAALYKTIVEGVIPVTSARTAEMVKLTENTFRDVNIALANELALI 235 (436)
T ss_pred ee--CccccCCCchhhhhhcCCceeecCCHHHHHHHHHHHHHheEEEEEcCChHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 22 454433 2333332221 47888999999999876665555432 222 222 2235788996555
Q ss_pred H-HCCCCHHHHHHHH
Q 008509 348 V-SLGVDVFRIDSAI 361 (563)
Q Consensus 348 ~-~~G~~~~~ID~a~ 361 (563)
. +.|++..++=++.
T Consensus 236 ~~~~GIdvwevIeaA 250 (436)
T COG0677 236 CNAMGIDVWEVIEAA 250 (436)
T ss_pred HHHhCCcHHHHHHHh
Confidence 5 5599765554444
No 124
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.16 E-value=2.6e-09 Score=105.55 Aligned_cols=188 Identities=15% Similarity=0.145 Sum_probs=126.1
Q ss_pred ceeEEEEcCCcchHHHHHHHHhCCC---e-EEEEeC-CHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCc
Q 008509 147 VRKVAVIGGGLMGSGIATAHILNNI---Y-VVLKEV-NSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY 221 (563)
Q Consensus 147 ~~kv~ViGaG~mG~~iA~~la~~G~---~-V~l~d~-~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 221 (563)
..||+|||+|.||.+++..++++|. + |+++++ ++++++.... ..+ +..+++.
T Consensus 4 ~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~----------~~~-------------~~~~~~~ 60 (245)
T PRK07634 4 KHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQA----------RYN-------------VSTTTDW 60 (245)
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHH----------HcC-------------cEEeCCh
Confidence 3589999999999999999998873 3 777887 4555443211 001 2234454
Q ss_pred -ccccCCCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhhhccCCCceeecccCCCCCCCCeEEE-Ee
Q 008509 222 -SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEI-VR 299 (563)
Q Consensus 222 -~~l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS~l~i~~la~~~~~~~r~ig~hf~~P~~~~~lvEi-v~ 299 (563)
+.+.++|+||.|+|.. .-++++.++.++++ +.+|+|.+.+++++.|.+.++...+++-.||..|......+.. ..
T Consensus 61 ~~~~~~~DiViiavp~~--~~~~v~~~l~~~~~-~~~vis~~~gi~~~~l~~~~~~~~~v~r~~Pn~a~~v~~g~~~~~~ 137 (245)
T PRK07634 61 KQHVTSVDTIVLAMPPS--AHEELLAELSPLLS-NQLVVTVAAGIGPSYLEERLPKGTPVAWIMPNTAAEIGKSISLYTM 137 (245)
T ss_pred HHHHhcCCEEEEecCHH--HHHHHHHHHHhhcc-CCEEEEECCCCCHHHHHHHcCCCCeEEEECCcHHHHHhcCCeEEee
Confidence 4578999999999965 34678888887666 5688899999999999988865557778888666654333332 34
Q ss_pred CCCCCHHHHHHHHHHHHHhCCceEEecCcchhhhHHH------HHHHHHHH-H-HHHHCCCCHHHHHHHH
Q 008509 300 TERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRA------FFPYSQSA-R-LLVSLGVDVFRIDSAI 361 (563)
Q Consensus 300 ~~~t~~~~~~~~~~l~~~lGk~~v~~~d~~Gfi~nRl------~~~~~~Ea-~-~l~~~G~~~~~ID~a~ 361 (563)
....+++..+.+++++..+|..+.+ .+..-....-+ +..++.++ . ..+..|++.++-.+++
T Consensus 138 ~~~~~~~~~~~v~~lf~~~G~~~~~-~e~~~~~~~a~~gs~pa~~~~~~~a~~~~~~~~Gl~~~~a~~~~ 206 (245)
T PRK07634 138 GQSVNETHKETLQLILKGIGTSQLC-TEEEVHQLTAVTGSAPAFLYYFAESLIEATKSYGVDEETAKHLV 206 (245)
T ss_pred CCCCCHHHHHHHHHHHHhCCCEEEE-CHHHcchHHhhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 5567889999999999999988864 32111111111 11122232 2 2445688888876666
No 125
>PRK06210 enoyl-CoA hydratase; Provisional
Probab=99.15 E-value=8.2e-11 Score=118.02 Aligned_cols=97 Identities=19% Similarity=0.243 Sum_probs=87.1
Q ss_pred CccCCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCccchhccccCCCCChHHHHHHHHHHHHHHHhhCCCC
Q 008509 1 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM 80 (563)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (563)
|+|||++++|+||+++||||+|||++++++.+.+++++++...+ +
T Consensus 172 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~i~~~~~-----------------------------------p 216 (272)
T PRK06210 172 LLLSARTFYAEEALRLGLVNRVVPPDELMERTLAYAEDLARNVS-----------------------------------P 216 (272)
T ss_pred HHHcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhcCC-----------------------------------H
Confidence 57899999999999999999999999999999999999886311 2
Q ss_pred hhHHHHHHHHHHhhccCchhhHHHHHHHHHHHhcCHHHHHHHHHHhhhhhhc
Q 008509 81 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATS 132 (563)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~~kr~~~ 132 (563)
.+...+|++++.....+++++++.|...+..++.++++++++.+|++||++.
T Consensus 217 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~af~~kr~p~ 268 (272)
T PRK06210 217 ASMAVIKRQLYEDAFQTLAEATARANREMHESLQRPDFIEGVASFLEKRPPR 268 (272)
T ss_pred HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCC
Confidence 5788899999988788899999999999999999999999999999998653
No 126
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=99.15 E-value=4.8e-11 Score=129.40 Aligned_cols=96 Identities=8% Similarity=-0.026 Sum_probs=89.5
Q ss_pred ccCCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCccchhccccCCCCChHHHHHHHHHHHHHHHhhCCCCh
Q 008509 2 MLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMP 81 (563)
Q Consensus 2 iltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (563)
++||++++|+||+++||||+|||++++++++.+++++++..+ +.
T Consensus 446 ~~tg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~ia~~~------------------------------------p~ 489 (550)
T PRK08184 446 AKIGQPLDADAAEELGLVTAAPDDIDWEDEVRIALEERASLS------------------------------------PD 489 (550)
T ss_pred HHhCCcCCHHHHHHcCCcccccChHHHHHHHHHHHHHHHhCC------------------------------------HH
Confidence 589999999999999999999999999999999999998854 35
Q ss_pred hHHHHHHHHHHhhccCchhh-HHHHHHHHHHHhcCHHHHH---HHHHHhhhhhhcc
Q 008509 82 QHQACLDVIEEGIVHGGYSG-VLKEAKVFKELVMLDTSRG---LVHVFFAQRATSK 133 (563)
Q Consensus 82 A~~~~~~~i~~~~~~~~~~~-l~~E~~~f~~l~~s~~~~~---~~~aF~~kr~~~k 133 (563)
|+..+|++++.+...+++++ +..|.+.|..++.|+++++ ++++|++||+++.
T Consensus 490 a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~g~~af~ekr~~~f 545 (550)
T PRK08184 490 ALTGMEANLRFAGPETMETRIFGRLTAWQNWIFQRPNAVGEKGALKVYGTGQKAQF 545 (550)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCcccccchHHHHhccCCCCCC
Confidence 88899999999999999999 9999999999999999999 9999999998754
No 127
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=99.15 E-value=4.6e-11 Score=129.04 Aligned_cols=97 Identities=10% Similarity=-0.023 Sum_probs=89.4
Q ss_pred CccCCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCccchhccccCCCCChHHHHHHHHHHHHHHHhhCCCC
Q 008509 1 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM 80 (563)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (563)
|++||++++|+||+++|||++|+|++++++++.++|++++..+ +
T Consensus 441 ~~ltg~~i~A~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~------------------------------------p 484 (546)
T TIGR03222 441 RDKIGQALDAEEAERLGLVTAAPDDIDWEDEIRIALEERASFS------------------------------------P 484 (546)
T ss_pred HHHhCCCCCHHHHHHcCCcccccCchHHHHHHHHHHHHHHhcC------------------------------------H
Confidence 4789999999999999999999999999999999999998854 3
Q ss_pred hhHHHHHHHHHHhhccCchhh-HHHHHHHHHHHhcCHHHHH---HHHHHhhhhhhcc
Q 008509 81 PQHQACLDVIEEGIVHGGYSG-VLKEAKVFKELVMLDTSRG---LVHVFFAQRATSK 133 (563)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~-l~~E~~~f~~l~~s~~~~~---~~~aF~~kr~~~k 133 (563)
.|...+|++++.+...+++++ +..|...|..++.|+++++ ++.+|++||+++.
T Consensus 485 ~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~g~~af~ekr~p~f 541 (546)
T TIGR03222 485 DALTGLEANLRFAGPETMETRIFGRLTAWQNWIFNRPNAVGENGALKVYGSGKKAQF 541 (546)
T ss_pred HHHHHHHHHHhhcCCcChhhhHHHHHHHHHHHHhcCCcccchhhHHHHHccCCCCCC
Confidence 588899999999999999999 9999999999999999999 9999999998643
No 128
>PRK06688 enoyl-CoA hydratase; Provisional
Probab=99.14 E-value=1.1e-10 Score=116.35 Aligned_cols=96 Identities=23% Similarity=0.287 Sum_probs=86.7
Q ss_pred CccCCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCccchhccccCCCCChHHHHHHHHHHHHHHHhhCCCC
Q 008509 1 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM 80 (563)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (563)
|+++|++++|+||+++||||+|+|++++++.|.+++++++..+ +
T Consensus 160 l~l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~i~~~~------------------------------------~ 203 (259)
T PRK06688 160 MLLLGEPLSAEEALRIGLVNRVVPAAELDAEADAQAAKLAAGP------------------------------------A 203 (259)
T ss_pred HHHhCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCC------------------------------------H
Confidence 5789999999999999999999999999999999999988743 2
Q ss_pred hhHHHHHHHHHHhhccCchhhHHHHHHHHHHHhcCHHHHHHHHHHhhhhhhc
Q 008509 81 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATS 132 (563)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~~kr~~~ 132 (563)
.+...+|++++.+...++++++..|.+.+..++.++++++++++|+++|+++
T Consensus 204 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~af~~~~~p~ 255 (259)
T PRK06688 204 SALRYTKRAINAATLTELEEALAREAAGFGRLLRTPDFREGATAFIEKRKPD 255 (259)
T ss_pred HHHHHHHHHHHhhhhCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCC
Confidence 4777889999988888899999999999999999999999999999987643
No 129
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=99.14 E-value=7.7e-10 Score=108.54 Aligned_cols=151 Identities=16% Similarity=0.164 Sum_probs=122.0
Q ss_pred eeEEEEcCCcchHHHHHHHHhCC----CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCc-c
Q 008509 148 RKVAVIGGGLMGSGIATAHILNN----IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S 222 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G----~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 222 (563)
++|+|||+|+||.+|+..|.++| .+|++.+++++..+...+ +-| ... +++. +
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~----------~~g------------~~~-~~~~~~ 58 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAA----------EYG------------VVT-TTDNQE 58 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHH----------HcC------------Ccc-cCcHHH
Confidence 68999999999999999999999 689999999998663211 111 111 3343 5
Q ss_pred cccCCCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhhhccCCCceeecccCCCCCCCCeEEEE-eCC
Q 008509 223 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIV-RTE 301 (563)
Q Consensus 223 ~l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS~l~i~~la~~~~~~~r~ig~hf~~P~~~~~lvEiv-~~~ 301 (563)
.+.++|+||.||.. ....+++.++.. ..++.+|+|...+++++.|...+. ..+++-..|..|......+..+ .+.
T Consensus 59 ~~~~advv~LavKP--q~~~~vl~~l~~-~~~~~lvISiaAGv~~~~l~~~l~-~~~vvR~MPNt~a~vg~g~t~i~~~~ 134 (266)
T COG0345 59 AVEEADVVFLAVKP--QDLEEVLSKLKP-LTKDKLVISIAAGVSIETLERLLG-GLRVVRVMPNTPALVGAGVTAISANA 134 (266)
T ss_pred HHhhCCEEEEEeCh--HhHHHHHHHhhc-ccCCCEEEEEeCCCCHHHHHHHcC-CCceEEeCCChHHHHcCcceeeecCc
Confidence 77889999999964 456788888888 788999999999999999999987 6788899898888776666655 457
Q ss_pred CCCHHHHHHHHHHHHHhCCceEEe
Q 008509 302 RTSAQVILDLMTVGKIIKKVPVVV 325 (563)
Q Consensus 302 ~t~~~~~~~~~~l~~~lGk~~v~~ 325 (563)
..+++..+.+.++++.+|+...+-
T Consensus 135 ~~~~~~~~~v~~l~~~~G~v~~v~ 158 (266)
T COG0345 135 NVSEEDKAFVEALLSAVGKVVEVE 158 (266)
T ss_pred cCCHHHHHHHHHHHHhcCCeEEec
Confidence 789999999999999999766653
No 130
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.14 E-value=3.3e-10 Score=113.20 Aligned_cols=166 Identities=19% Similarity=0.196 Sum_probs=110.7
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCcc-cccC
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS-EFKD 226 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~l~~ 226 (563)
++|+|||+|.||+++|..|+++||+|++|.++++.+++.... +..- +... |. .....+..++|++ ++++
T Consensus 2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~-~~N~-~yLp-~i-------~lp~~l~at~Dl~~a~~~ 71 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINET-RENP-KYLP-GI-------LLPPNLKATTDLAEALDG 71 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhc-CcCc-cccC-Cc-------cCCcccccccCHHHHHhc
Confidence 689999999999999999999999999999999988775432 1111 0111 11 1234677888984 6788
Q ss_pred CCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCCCCC------HHHHhhhccCCCceeecccCCCCC-------CCC
Q 008509 227 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID------LNIVGEKTSSQDRIIGAHFFSPAH-------VMP 293 (563)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS~l~------i~~la~~~~~~~r~ig~hf~~P~~-------~~~ 293 (563)
||+|+.+||.. ..+++++++..++++++++++.+-++. ++++.+..- |...++ +.+.|+ .+|
T Consensus 72 ad~iv~avPs~--~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~l-~~~~~~--vLSGPs~A~EVa~g~p 146 (329)
T COG0240 72 ADIIVIAVPSQ--ALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEEL-PDNPIA--VLSGPSFAKEVAQGLP 146 (329)
T ss_pred CCEEEEECChH--HHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHHHc-CCCeEE--EEECccHHHHHhcCCC
Confidence 99999999966 578999999888999999888766543 344433321 221122 223332 234
Q ss_pred eEEEEeCCCCCHHHHHHHHHHHHHhCCceEEecCcch
Q 008509 294 LLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG 330 (563)
Q Consensus 294 lvEiv~~~~t~~~~~~~~~~l~~~lGk~~v~~~d~~G 330 (563)
...++.+ .+++..+.++.++..--.++....|..|
T Consensus 147 ta~~vas--~d~~~a~~v~~~f~~~~Frvy~~~Dv~G 181 (329)
T COG0240 147 TAVVVAS--NDQEAAEKVQALFSSPYFRVYTSTDVIG 181 (329)
T ss_pred cEEEEec--CCHHHHHHHHHHhCCCcEEEEecCchhh
Confidence 3334443 4777777777777664445555566555
No 131
>PTZ00117 malate dehydrogenase; Provisional
Probab=99.13 E-value=1.4e-10 Score=118.69 Aligned_cols=125 Identities=22% Similarity=0.285 Sum_probs=93.3
Q ss_pred eeEEEEcCCcchHHHHHHHHhCC-CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCcccccC
Q 008509 148 RKVAVIGGGLMGSGIATAHILNN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 226 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 226 (563)
+||+|||+|.||.++|..++..| .+|+++|++++.++. .. ++..... .......++..+++++++++
T Consensus 6 ~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g-~~-----lDl~~~~------~~~~~~~~i~~~~d~~~l~~ 73 (319)
T PTZ00117 6 KKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQG-KA-----LDLKHFS------TLVGSNINILGTNNYEDIKD 73 (319)
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchh-HH-----HHHhhhc------cccCCCeEEEeCCCHHHhCC
Confidence 58999999999999999999999 699999999876542 11 1100000 00011124666678899999
Q ss_pred CCEEEEec--CCCh------------HHHHHHHHHHHhhCCCC-eEEEecCCCCCHHHHhhhccCC-Cceeecc
Q 008509 227 VDMVIEAV--IESV------------PLKQKIFSELEKACPPH-CILATNTSTIDLNIVGEKTSSQ-DRIIGAH 284 (563)
Q Consensus 227 aDlVieav--~e~~------------~~k~~v~~~l~~~~~~~-~ii~sntS~l~i~~la~~~~~~-~r~ig~h 284 (563)
||+||+++ +++. .+++++.+++.+++++. .|++||.+.+....+......| .|++|++
T Consensus 74 ADiVVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~di~t~~~~~~s~~p~~rviG~g 147 (319)
T PTZ00117 74 SDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLDCMVKVFQEKSGIPSNKICGMA 147 (319)
T ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHHHHhhCCCcccEEEec
Confidence 99999998 7766 88999999999999777 4667888877777776666655 7888876
No 132
>PRK03580 carnitinyl-CoA dehydratase; Provisional
Probab=99.13 E-value=1.1e-10 Score=116.38 Aligned_cols=96 Identities=16% Similarity=0.171 Sum_probs=85.4
Q ss_pred CccCCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCccchhccccCCCCChHHHHHHHHHHHHHHHhhCCCC
Q 008509 1 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM 80 (563)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (563)
|+|+|++++|+||+++||||+|||++++.+.|.+++++++..+ +
T Consensus 158 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~------------------------------------~ 201 (261)
T PRK03580 158 MVMTGRRMDAEEALRWGIVNRVVPQAELMDRARELAQQLVNSA------------------------------------P 201 (261)
T ss_pred HHHhCCccCHHHHHHcCCCcEecCHhHHHHHHHHHHHHHHhCC------------------------------------H
Confidence 4789999999999999999999999999999999999998743 3
Q ss_pred hhHHHHHHHHHHhhccCchhhHHHHH----HHHHHHhcCHHHHHHHHHHhhhhhhc
Q 008509 81 PQHQACLDVIEEGIVHGGYSGVLKEA----KVFKELVMLDTSRGLVHVFFAQRATS 132 (563)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~----~~f~~l~~s~~~~~~~~aF~~kr~~~ 132 (563)
.+...+|++++.....+++++++.|. ..+..++.|+++++++.+|++||++.
T Consensus 202 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~d~~e~~~af~ekr~~~ 257 (261)
T PRK03580 202 LAIAALKEIYRETSEMPVEEAYRYIRSGVLKHYPSVLHSEDALEGPRAFAEKRDPV 257 (261)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHhhhHHHHHHHhcCccHHHHHHHHhcCCCCC
Confidence 57888999998887788999999887 47888999999999999999998654
No 133
>PRK08259 enoyl-CoA hydratase; Provisional
Probab=99.13 E-value=1.4e-10 Score=115.00 Aligned_cols=93 Identities=15% Similarity=0.054 Sum_probs=83.8
Q ss_pred CccCCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCccchhccccCCCCChHHHHHHHHHHHHHHHhhCCCC
Q 008509 1 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM 80 (563)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (563)
|+++|++++|+||+++||||+|||++++++.|.++++++++.+ +
T Consensus 157 lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~------------------------------------~ 200 (254)
T PRK08259 157 LILTGRPVDADEALAIGLANRVVPKGQARAAAEELAAELAAFP------------------------------------Q 200 (254)
T ss_pred HHHcCCccCHHHHHHcCCCCEeeChhHHHHHHHHHHHHHHhCC------------------------------------H
Confidence 5789999999999999999999999999999999999998853 3
Q ss_pred hhHHHHHHHHHHhhccCchhhHHHHHHHHHHHhcCHHHHHHHHHHhhhhh
Q 008509 81 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRA 130 (563)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~~kr~ 130 (563)
.+...+|++++.....++++++..|...+..++. +++++++.+|++++.
T Consensus 201 ~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~-~d~~egi~af~~~~~ 249 (254)
T PRK08259 201 TCLRADRLSALEQWGLPEEAALANEFAHGLAVLA-AEALEGAARFAAGAG 249 (254)
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHh-hHHHHHHHHHHhhhc
Confidence 5788899999988778899999999998888887 999999999998765
No 134
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.13 E-value=7.7e-10 Score=114.17 Aligned_cols=163 Identities=13% Similarity=0.099 Sum_probs=100.4
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHhhhcCeeeecCc-cccc
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGK-LTQDKANNALKMLKGVLDY-SEFK 225 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~-~~~~~~~~~~~~i~~~~~~-~~l~ 225 (563)
++|+|||+|.||.+||..|+++|++|++|+++++..+.....- ..+. +.. .....++..++++ +.++
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~--------~~~~~~~g---~~~~~~~~~~~~~~e~~~ 73 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAER--------ENREYLPG---VALPAELYPTADPEEALA 73 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhC--------cccccCCC---CcCCCCeEEeCCHHHHHc
Confidence 5899999999999999999999999999999988766543210 0010 000 0011224556666 4678
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCCCCC-----HHHHhhhccC----CCceeecccCCCCC---CCC
Q 008509 226 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID-----LNIVGEKTSS----QDRIIGAHFFSPAH---VMP 293 (563)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS~l~-----i~~la~~~~~----~~r~ig~hf~~P~~---~~~ 293 (563)
+||+||.|+|+.. + ++++ +.+++++++++.+.++. ...+++.+.. .-.+++. +..+.. ..+
T Consensus 74 ~aD~Vi~~v~~~~-~-~~v~----~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~~~~g-P~~a~~~~~~~~ 146 (328)
T PRK14618 74 GADFAVVAVPSKA-L-RETL----AGLPRALGYVSCAKGLAPDGGRLSELARVLEFLTQARVAVLSG-PNHAEEIARFLP 146 (328)
T ss_pred CCCEEEEECchHH-H-HHHH----HhcCcCCEEEEEeeccccCCCccchHHHHHHHhcCCCeEEEEC-ccHHHHHHcCCC
Confidence 9999999999873 2 3343 45667777776666554 3345544421 1112221 111111 112
Q ss_pred eEEEEeCCCCCHHHHHHHHHHHHHhCCceEEecCcch
Q 008509 294 LLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG 330 (563)
Q Consensus 294 lvEiv~~~~t~~~~~~~~~~l~~~lGk~~v~~~d~~G 330 (563)
.+.++.+ .+++.++.+++++...|..+....|.-|
T Consensus 147 ~~~~~~~--~~~~~~~~v~~ll~~~~~~v~~~~di~g 181 (328)
T PRK14618 147 AATVVAS--PEPGLARRVQAAFSGPSFRVYTSRDRVG 181 (328)
T ss_pred eEEEEEe--CCHHHHHHHHHHhCCCcEEEEecCCccc
Confidence 3334433 4788899999999999987776555433
No 135
>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated
Probab=99.12 E-value=1.4e-10 Score=115.77 Aligned_cols=96 Identities=13% Similarity=0.168 Sum_probs=84.4
Q ss_pred CccCCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCccchhccccCCCCChHHHHHHHHHHHHHHHhhCCCC
Q 008509 1 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM 80 (563)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (563)
|+|||++++|+||+++||||+|||+++|.+.+.+++++++..+ +
T Consensus 164 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~------------------------------------p 207 (265)
T PRK05674 164 YALTAERFDGRRARELGLLAESYPAAELEAQVEAWIANLLLNS------------------------------------P 207 (265)
T ss_pred HHHhCcccCHHHHHHCCCcceecCHHHHHHHHHHHHHHHHhcC------------------------------------H
Confidence 5789999999999999999999999999999999999998753 3
Q ss_pred hhHHHHHHHHHHhhccCchhhHHH-HHHHHHHHhcCHHHHHHHHHHhhhhhhc
Q 008509 81 PQHQACLDVIEEGIVHGGYSGVLK-EAKVFKELVMLDTSRGLVHVFFAQRATS 132 (563)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~-E~~~f~~l~~s~~~~~~~~aF~~kr~~~ 132 (563)
.+...+|+.++.....++++++.. |...+..++.|+++++++.+|++||++.
T Consensus 208 ~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~e~~~af~~kr~p~ 260 (265)
T PRK05674 208 QALRASKDLLREVGDGELSPALRRYCENAIARIRVSAEGQEGLRAFLEKRTPA 260 (265)
T ss_pred HHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHhcCHHHHHHHHHHHccCCCC
Confidence 578889999999888888888765 4567888999999999999999998643
No 136
>PRK07659 enoyl-CoA hydratase; Provisional
Probab=99.12 E-value=1.3e-10 Score=115.74 Aligned_cols=95 Identities=13% Similarity=0.127 Sum_probs=86.1
Q ss_pred CccCCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCccchhccccCCCCChHHHHHHHHHHHHHHHhhCCCC
Q 008509 1 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM 80 (563)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (563)
|++||++++|+||+++||||++| ++++.+.+.+++++++..+ +
T Consensus 162 l~ltg~~~~a~eA~~~Glv~~vv-~~~~~~~a~~~a~~l~~~~------------------------------------~ 204 (260)
T PRK07659 162 IIWEGKKLSATEALDLGLIDEVI-GGDFQTAAKQKISEWLQKP------------------------------------L 204 (260)
T ss_pred HHHhCCccCHHHHHHcCChHHHh-hhHHHHHHHHHHHHHHhCC------------------------------------H
Confidence 57899999999999999999999 7889999999999988743 2
Q ss_pred hhHHHHHHHHHHhhccCchhhHHHHHHHHHHHhcCHHHHHHHHHHhhhhhhc
Q 008509 81 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATS 132 (563)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~~kr~~~ 132 (563)
.+...+|++++.....+++++++.|.+.+..++.|+++++++.+|++||+++
T Consensus 205 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~af~~kr~p~ 256 (260)
T PRK07659 205 KAMIETKQIYCELNRSQLEQVLQLEKRAQYAMRQTADHKEGIRAFLEKRLPV 256 (260)
T ss_pred HHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCHhHHHHHHHHhcCCCCC
Confidence 5788899999988778899999999999999999999999999999998754
No 137
>PRK07260 enoyl-CoA hydratase; Provisional
Probab=99.12 E-value=1.7e-10 Score=114.55 Aligned_cols=94 Identities=17% Similarity=0.175 Sum_probs=86.2
Q ss_pred CccCCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCccchhccccCCCCChHHHHHHHHHHHHHHHhhCCCC
Q 008509 1 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM 80 (563)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (563)
|+|+|++++|+||+++||||++||++++.+.+.+++++++..+ +
T Consensus 162 l~l~g~~~sa~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~------------------------------------~ 205 (255)
T PRK07260 162 LAMTGEALTAEKALEYGFVYRVAESEKLEKTCEQLLKKLRRGS------------------------------------S 205 (255)
T ss_pred HHHhCCccCHHHHHHcCCcceecCHhHHHHHHHHHHHHHHcCC------------------------------------H
Confidence 5789999999999999999999999999999999999998743 2
Q ss_pred hhHHHHHHHHHHhhccCchhhHHHHHHHHHHHhcCHHHHHHHHHHhhhhh
Q 008509 81 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRA 130 (563)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~~kr~ 130 (563)
.+...+|+.++.....++++++..|...+..++.|+++++++.+|.+||+
T Consensus 206 ~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr~ 255 (255)
T PRK07260 206 NSYAAIKSLVWESFFKGWEDYAKLELALQESLAFKEDFKEGVRAFSERRR 255 (255)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCC
Confidence 57888999999888888999999999999999999999999999999874
No 138
>PRK06223 malate dehydrogenase; Reviewed
Probab=99.12 E-value=2.1e-10 Score=117.28 Aligned_cols=125 Identities=19% Similarity=0.273 Sum_probs=84.6
Q ss_pred ceeEEEEcCCcchHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCccccc
Q 008509 147 VRKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 225 (563)
Q Consensus 147 ~~kv~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 225 (563)
|+||+|||+|.||.++|..++..|+ +|+++|++++.++.....+... ... .....+++.++|+++++
T Consensus 2 ~~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~---~~~---------~~~~~~i~~~~d~~~~~ 69 (307)
T PRK06223 2 RKKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEA---APV---------EGFDTKITGTNDYEDIA 69 (307)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhh---hhh---------cCCCcEEEeCCCHHHHC
Confidence 4799999999999999999999876 9999999988754321111111 000 11123566678888999
Q ss_pred CCCEEEEec--------------CCChHHHHHHHHHHHhhCCCCe-EEEecCCCCCHHHHhhhccC-CCceeec
Q 008509 226 DVDMVIEAV--------------IESVPLKQKIFSELEKACPPHC-ILATNTSTIDLNIVGEKTSS-QDRIIGA 283 (563)
Q Consensus 226 ~aDlVieav--------------~e~~~~k~~v~~~l~~~~~~~~-ii~sntS~l~i~~la~~~~~-~~r~ig~ 283 (563)
+||+||+++ .++..+++++++++.+.+++.. |++||.+.+-...+...... |.|++|+
T Consensus 70 ~aDiVii~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~d~~~~~~~~~s~~~~~~viG~ 143 (307)
T PRK06223 70 GSDVVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPVDAMTYVALKESGFPKNRVIGM 143 (307)
T ss_pred CCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCcccEEEe
Confidence 999999986 3567889999999999987653 44566554333333333232 3456654
No 139
>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase). This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.
Probab=99.11 E-value=1.6e-10 Score=115.05 Aligned_cols=95 Identities=14% Similarity=0.181 Sum_probs=81.7
Q ss_pred CccCCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCccchhccccCCCCChHHHHHHHHHHHHHHHhhCCCC
Q 008509 1 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM 80 (563)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (563)
|+++|++++|+||+++||||+|||++++.+.+.+++++++..+ +
T Consensus 161 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~------------------------------------~ 204 (259)
T TIGR01929 161 IWFLCRQYDAEQALDMGLVNTVVPLADLEKETVRWCREILQKS------------------------------------P 204 (259)
T ss_pred HHHhCCccCHHHHHHcCCcccccCHHHHHHHHHHHHHHHHhCC------------------------------------H
Confidence 5789999999999999999999999999999999999998753 3
Q ss_pred hhHHHHHHHHHHhhccCchhhHHHHHHHHHHHhcCHHHHHHHHHHhhhhhhc
Q 008509 81 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATS 132 (563)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~~kr~~~ 132 (563)
.+...+|++++..... .+..+..|...+..++.|+++++++.+|++||+++
T Consensus 205 ~a~~~~K~~l~~~~~~-~~~~~~~e~~~~~~~~~~~d~~egi~af~~kr~p~ 255 (259)
T TIGR01929 205 MAIRMLKAALNADCDG-QAGLQELAGNATMLFYMTEEGQEGRNAFLEKRQPD 255 (259)
T ss_pred HHHHHHHHHHHhhhcc-chHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCC
Confidence 5788889988876443 35556667889999999999999999999998754
No 140
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=99.11 E-value=1.4e-09 Score=124.33 Aligned_cols=156 Identities=17% Similarity=0.178 Sum_probs=117.4
Q ss_pred ceeEEEEcCCcchHHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCc-cc
Q 008509 147 VRKVAVIGGGLMGSGIATAHILNN--IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 223 (563)
Q Consensus 147 ~~kv~ViGaG~mG~~iA~~la~~G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 223 (563)
+++|+|||+|.||.+++..+..+| ++|++||++++.++.+. +.|... ...++. +.
T Consensus 3 ~~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~-----------~~g~~~-----------~~~~~~~~~ 60 (735)
T PRK14806 3 FGRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAV-----------SLGVID-----------RGEEDLAEA 60 (735)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHH-----------HCCCCC-----------cccCCHHHH
Confidence 578999999999999999999999 48999999988765532 223210 112333 45
Q ss_pred ccCCCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCCCC--CHHHHhhhcc-CCCceeecccCCCCC----------
Q 008509 224 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI--DLNIVGEKTS-SQDRIIGAHFFSPAH---------- 290 (563)
Q Consensus 224 l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS~l--~i~~la~~~~-~~~r~ig~hf~~P~~---------- 290 (563)
+++||+||.|+|.+ ...++++++.++++++++|++.+|.- .+..+.+.+. .+.||++.||+....
T Consensus 61 ~~~aDvVilavp~~--~~~~vl~~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~~r~~~~hPm~G~~~~g~~~a~~~ 138 (735)
T PRK14806 61 VSGADVIVLAVPVL--AMEKVLADLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELPAGFVPGHPIAGSEKSGVHAANAD 138 (735)
T ss_pred hcCCCEEEECCCHH--HHHHHHHHHHHhcCCCcEEEEcCCCchHHHHHHHHhccccCCeEEecCCcCcCCcchhhhhhhH
Confidence 78999999999965 56788899999888888876555432 2556665543 357899999976332
Q ss_pred --CCCeEEEEeCCCCCHHHHHHHHHHHHHhCCceEEec
Q 008509 291 --VMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVG 326 (563)
Q Consensus 291 --~~~lvEiv~~~~t~~~~~~~~~~l~~~lGk~~v~~~ 326 (563)
..+.+.+++....+++..+.+.++++.+|..++++.
T Consensus 139 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~~~~~~ 176 (735)
T PRK14806 139 LFRNHKVILTPLAETDPAALARVDRLWRAVGADVLHMD 176 (735)
T ss_pred HhCCCeEEEECCCCCCHHHHHHHHHHHHHcCCEEEEcC
Confidence 234567788888899999999999999999888874
No 141
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=99.10 E-value=1.5e-10 Score=106.21 Aligned_cols=105 Identities=23% Similarity=0.230 Sum_probs=76.9
Q ss_pred eEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCc-ccccCC
Q 008509 149 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKDV 227 (563)
Q Consensus 149 kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~a 227 (563)
||+|||+|.||.++|..++.+|++|++|.++++.++...+. ......+.. ......+..++|+ ++++++
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~-------~~n~~~~~~---~~l~~~i~~t~dl~~a~~~a 70 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINET-------RQNPKYLPG---IKLPENIKATTDLEEALEDA 70 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHH-------TSETTTSTT---SBEETTEEEESSHHHHHTT-
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHh-------CCCCCCCCC---cccCcccccccCHHHHhCcc
Confidence 79999999999999999999999999999999877664321 000000111 1223467788898 578999
Q ss_pred CEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCCCC
Q 008509 228 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI 265 (563)
Q Consensus 228 DlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS~l 265 (563)
|+||.+||... -+++++++.+++++++++++.+-++
T Consensus 71 d~IiiavPs~~--~~~~~~~l~~~l~~~~~ii~~~KG~ 106 (157)
T PF01210_consen 71 DIIIIAVPSQA--HREVLEQLAPYLKKGQIIISATKGF 106 (157)
T ss_dssp SEEEE-S-GGG--HHHHHHHHTTTSHTT-EEEETS-SE
T ss_pred cEEEecccHHH--HHHHHHHHhhccCCCCEEEEecCCc
Confidence 99999999764 5789999999999999998877665
No 142
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=99.10 E-value=3.9e-09 Score=107.21 Aligned_cols=204 Identities=12% Similarity=0.065 Sum_probs=135.1
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCCeEEEEeCC-HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCcccccC
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVN-SEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 226 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~-~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 226 (563)
++|+|||+|.||.++|..|..+|++|+++++. .+..+.+. +.| +..++..+.+++
T Consensus 4 kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~-----------~~G-------------v~~~s~~ea~~~ 59 (314)
T TIGR00465 4 KTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKAT-----------EDG-------------FKVGTVEEAIPQ 59 (314)
T ss_pred CEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHH-----------HCC-------------CEECCHHHHHhc
Confidence 57999999999999999999999998876654 33333221 122 222232356799
Q ss_pred CCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhhhccCCCceeecccCCCCCC-------CCeEE-EE
Q 008509 227 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHV-------MPLLE-IV 298 (563)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS~l~i~~la~~~~~~~r~ig~hf~~P~~~-------~~lvE-iv 298 (563)
||+||.++|.+.. ...++.++.+.++++. ++|...+++++.+...++...+++-..|..|.+. +..+. ++
T Consensus 60 ADiVvLaVpp~~~-~~~v~~ei~~~l~~g~-iVs~aaG~~i~~~~~~~~~~~~VvrvmPn~p~~~vr~~~~~G~G~~~l~ 137 (314)
T TIGR00465 60 ADLIMNLLPDEVQ-HEVYEAEIQPLLKEGK-TLGFSHGFNIHFVQIVPPKDVDVVMVAPKGPGTLVREEYKEGFGVPTLI 137 (314)
T ss_pred CCEEEEeCCcHhH-HHHHHHHHHhhCCCCc-EEEEeCCccHhhccccCCCCCcEEEECCCCCcHHHHHHhhcCCCeeEEE
Confidence 9999999996633 4466777888888886 5677888999988877765557888889888873 44443 43
Q ss_pred -eCCCCCHHHHHHHHHHHHHhCCc-------eE--Eec-Ccch-h-hhHHHHHHHHHHH-HHHHHCCCCHHHHHHHH-Hh
Q 008509 299 -RTERTSAQVILDLMTVGKIIKKV-------PV--VVG-NCTG-F-AVNRAFFPYSQSA-RLLVSLGVDVFRIDSAI-RS 363 (563)
Q Consensus 299 -~~~~t~~~~~~~~~~l~~~lGk~-------~v--~~~-d~~G-f-i~nRl~~~~~~Ea-~~l~~~G~~~~~ID~a~-~~ 363 (563)
.+...+.+..+.+..++..+|.. .. .+. |-=+ + .+.-..-+|+... -.+++.|++++.--... ..
T Consensus 138 a~~~~~~~~~~~~~~~~~~~iG~~~~~~~~t~f~~e~~edl~~~~t~l~Gs~pa~v~~~~ealv~~G~~~e~A~~~~~~~ 217 (314)
T TIGR00465 138 AVEQDPTGEAMAIALAYAKAIGGGRAGVLETTFKEETESDLFGEQAVLCGGLTALIKAGFDTLVEAGYQPELAYFETVHE 217 (314)
T ss_pred EecCCCCHHHHHHHHHHHHHcCCCccceeechhHhhhhHHhcCcchhHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 56667888999999999999988 21 111 1001 0 1111112232221 12378899887766665 43
Q ss_pred cCCCccHHHHhhhhchH
Q 008509 364 FGLPIGPFQLLDLAGYG 380 (563)
Q Consensus 364 ~G~p~GPf~~~D~~Gld 380 (563)
+ .|--.++-..|..
T Consensus 218 ~---~g~~~l~~e~g~~ 231 (314)
T TIGR00465 218 L---KLIVDLIYEGGIT 231 (314)
T ss_pred H---HHHHHHHHHhcHH
Confidence 3 4666777666764
No 143
>PRK07396 dihydroxynaphthoic acid synthetase; Validated
Probab=99.09 E-value=2.4e-10 Score=114.59 Aligned_cols=96 Identities=14% Similarity=0.172 Sum_probs=81.9
Q ss_pred CccCCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCccchhccccCCCCChHHHHHHHHHHHHHHHhhCCCC
Q 008509 1 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM 80 (563)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (563)
|++||++++|+||+++||||+|||+++|++.+.++|++++..+ +
T Consensus 171 l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~------------------------------------~ 214 (273)
T PRK07396 171 IWFLCRQYDAQEALDMGLVNTVVPLADLEKETVRWCREMLQNS------------------------------------P 214 (273)
T ss_pred HHHhCCCcCHHHHHHcCCcCeecCHHHHHHHHHHHHHHHHhCC------------------------------------H
Confidence 5789999999999999999999999999999999999998753 2
Q ss_pred hhHHHHHHHHHHhhccCchhhHHHHHHHHHHHhcCHHHHHHHHHHhhhhhhcc
Q 008509 81 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 133 (563)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~~kr~~~k 133 (563)
.+...+|++++.... ..+...+.|...+..++.|+++++++.+|++||++..
T Consensus 215 ~a~~~~K~~l~~~~~-~~~~~~~~e~~~~~~~~~~~d~~egi~af~~kr~p~~ 266 (273)
T PRK07396 215 MALRCLKAALNADCD-GQAGLQELAGNATMLFYMTEEAQEGRNAFNEKRQPDF 266 (273)
T ss_pred HHHHHHHHHHHhhhc-cHHHHHHHHHHHHHHHhcChhHHHHHHHHhCCCCCCC
Confidence 577888898887643 3444555788889999999999999999999987643
No 144
>PRK11423 methylmalonyl-CoA decarboxylase; Provisional
Probab=99.09 E-value=2.5e-10 Score=113.64 Aligned_cols=96 Identities=15% Similarity=0.133 Sum_probs=83.1
Q ss_pred CccCCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCccchhccccCCCCChHHHHHHHHHHHHHHHhhCCCC
Q 008509 1 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM 80 (563)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (563)
|+++|++++|+||+++||||+|||++++++.+.+++++++..+ +
T Consensus 160 l~l~g~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~l~~~~------------------------------------~ 203 (261)
T PRK11423 160 MFFTASPITAQRALAVGILNHVVEVEELEDFTLQMAHHISEKA------------------------------------P 203 (261)
T ss_pred HHHcCCCcCHHHHHHcCCcCcccCHHHHHHHHHHHHHHHHhcC------------------------------------H
Confidence 5789999999999999999999999999999999999998743 2
Q ss_pred hhHHHHHHHHHHhhc-cCc-hhhHHHHHHHHHHHhcCHHHHHHHHHHhhhhhhc
Q 008509 81 PQHQACLDVIEEGIV-HGG-YSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATS 132 (563)
Q Consensus 81 ~A~~~~~~~i~~~~~-~~~-~~~l~~E~~~f~~l~~s~~~~~~~~aF~~kr~~~ 132 (563)
.+...+|++++.... .+. +..++.|.+.+..++.|+++++++.+|++||++.
T Consensus 204 ~a~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~eg~~af~~kr~p~ 257 (261)
T PRK11423 204 LAIAVIKEQLRVLGEAHPMNPDEFERIQGLRRAVYDSEDYQEGMNAFLEKRKPV 257 (261)
T ss_pred HHHHHHHHHHHhhcccCCcchHHHHHHHHHHHHHhCChhHHHHHHHHhccCCCC
Confidence 578888999886543 344 5788889999999999999999999999998754
No 145
>PRK05864 enoyl-CoA hydratase; Provisional
Probab=99.07 E-value=3.4e-10 Score=113.68 Aligned_cols=96 Identities=18% Similarity=0.153 Sum_probs=81.1
Q ss_pred CccCCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCccchhccccCCCCChHHHHHHHHHHHHHHHhhCCCC
Q 008509 1 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM 80 (563)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (563)
|+|+|++++|+||+++||||+|||++++++.+.+++++++..+ +
T Consensus 174 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~------------------------------------p 217 (276)
T PRK05864 174 IMLTGRDVDAEEAERIGLVSRQVPDEQLLDTCYAIAARMAGFS------------------------------------R 217 (276)
T ss_pred HHHcCCccCHHHHHHcCCcceeeCHHHHHHHHHHHHHHHHhCC------------------------------------H
Confidence 5789999999999999999999999999999999999998743 3
Q ss_pred hhHHHHHHHHHHhhcc-CchhhHHHHHHHHH-HHhcCHHHHHHHHHHhhhhhhc
Q 008509 81 PQHQACLDVIEEGIVH-GGYSGVLKEAKVFK-ELVMLDTSRGLVHVFFAQRATS 132 (563)
Q Consensus 81 ~A~~~~~~~i~~~~~~-~~~~~l~~E~~~f~-~l~~s~~~~~~~~aF~~kr~~~ 132 (563)
.+...+|++++..... ++++++..|..... .++.|+++++++.+|++||++.
T Consensus 218 ~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~d~~e~~~af~~kr~p~ 271 (276)
T PRK05864 218 PGIELTKRTLWSGLDAASLEAHMQAEGLGQLFVRLLTANFEEAVAARAEKRPPV 271 (276)
T ss_pred HHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHhccChhHHHHHHHHhccCCCC
Confidence 5788899999877654 67888888875432 3578999999999999998653
No 146
>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated
Probab=99.07 E-value=3.7e-10 Score=113.25 Aligned_cols=94 Identities=11% Similarity=0.036 Sum_probs=83.3
Q ss_pred CccCCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCccchhccccCCCCChHHHHHHHHHHHHHHHhhCCCC
Q 008509 1 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM 80 (563)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (563)
|+|||++++|+||+++||||+|||+++|++.+.+++++++..+ +
T Consensus 168 llltg~~~~A~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~------------------------------------p 211 (275)
T PRK09120 168 YIMTGETFTGRKAAEMGLVNESVPLAQLRARTRELAAKLLEKN------------------------------------P 211 (275)
T ss_pred HHhcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCC------------------------------------H
Confidence 5789999999999999999999999999999999999998753 3
Q ss_pred hhHHHHHHHHHHhhccCchhhHHHHHH--HHHHHhcCH-HHHHHHHHHhhhhh
Q 008509 81 PQHQACLDVIEEGIVHGGYSGVLKEAK--VFKELVMLD-TSRGLVHVFFAQRA 130 (563)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~--~f~~l~~s~-~~~~~~~aF~~kr~ 130 (563)
.+...+|++++.....+++++++.|.. .+..++.++ ++++++.+|++||.
T Consensus 212 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~d~~eg~~afl~kr~ 264 (275)
T PRK09120 212 VVLRAAKDGFKRVRELTWDQAEDYLYAKLEQANSLDPEGGREEGLKQFLDDKS 264 (275)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhccc
Confidence 588899999999888889999888764 455678898 89999999999887
No 147
>PLN02921 naphthoate synthase
Probab=99.06 E-value=4.1e-10 Score=115.07 Aligned_cols=96 Identities=16% Similarity=0.123 Sum_probs=80.4
Q ss_pred CccCCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCccchhccccCCCCChHHHHHHHHHHHHHHHhhCCCC
Q 008509 1 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM 80 (563)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (563)
|+|+|++++|+||+++||||+|||++++++.+.+++++++..+ +
T Consensus 225 llltG~~~~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~------------------------------------p 268 (327)
T PLN02921 225 MWFLARFYTASEALKMGLVNTVVPLDELEGETVKWCREILRNS------------------------------------P 268 (327)
T ss_pred HHHcCCcCCHHHHHHCCCceEEeCHHHHHHHHHHHHHHHHccC------------------------------------H
Confidence 5789999999999999999999999999999999999998753 3
Q ss_pred hhHHHHHHHHHHhhccCchhhHHHHHHHHHHHhcCHHHHHHHHHHhhhhhhcc
Q 008509 81 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 133 (563)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~~kr~~~k 133 (563)
.+...+|++++..... .......|...+..++.|+++++++.+|++||++..
T Consensus 269 ~al~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~s~d~~egi~Af~ekr~p~f 320 (327)
T PLN02921 269 TAIRVLKSALNAADDG-HAGLQELGGNATLLFYGSEEGNEGRTAYLEGRAPDF 320 (327)
T ss_pred HHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCCC
Confidence 5788889998876543 333334445888899999999999999999987653
No 148
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.06 E-value=3.5e-09 Score=108.24 Aligned_cols=139 Identities=17% Similarity=0.210 Sum_probs=93.3
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCc-ccccC
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 226 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 226 (563)
+||+|||+|.||.+||..|+.+|++|++|++++.. ++ +.+++
T Consensus 5 m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~~-------------------------------------~~~~~~~~ 47 (308)
T PRK14619 5 KTIAILGAGAWGSTLAGLASANGHRVRVWSRRSGL-------------------------------------SLAAVLAD 47 (308)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCCC-------------------------------------CHHHHHhc
Confidence 57999999999999999999999999999998530 11 34578
Q ss_pred CCEEEEecCCChHHHHHHHHHHHhh-CCCCeEEEecCCCCCHH------HHhh-hccCCCceeecccCCCCC------CC
Q 008509 227 VDMVIEAVIESVPLKQKIFSELEKA-CPPHCILATNTSTIDLN------IVGE-KTSSQDRIIGAHFFSPAH------VM 292 (563)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~-~~~~~ii~sntS~l~i~------~la~-~~~~~~r~ig~hf~~P~~------~~ 292 (563)
||+||.|+|.. ..+.++.++..+ ++++++++++++++.+. ++.. .... .+++. +..|.. ..
T Consensus 48 advvi~~vp~~--~~~~v~~~l~~~~~~~~~ivi~~s~gi~~~~~~~~s~~~~~~~~~-~~v~~--i~gp~~a~ei~~~~ 122 (308)
T PRK14619 48 ADVIVSAVSMK--GVRPVAEQVQALNLPPETIIVTATKGLDPETTRTPSQIWQAAFPN-HPVVV--LSGPNLSKEIQQGL 122 (308)
T ss_pred CCEEEEECChH--HHHHHHHHHHHhcCCCCcEEEEeCCcccCCCCcCHHHHHHHHcCC-CceEE--EECCCcHHHHhcCC
Confidence 99999999974 466788888764 67888888876655433 2111 1111 12210 012211 11
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHhCCceEEecCcch
Q 008509 293 PLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG 330 (563)
Q Consensus 293 ~lvEiv~~~~t~~~~~~~~~~l~~~lGk~~v~~~d~~G 330 (563)
+..-++.+ .+.+..+.+++++...+..+...+|.-|
T Consensus 123 ~~~~~~ag--~~~~~~~~v~~ll~~~~~~~~~~~d~~G 158 (308)
T PRK14619 123 PAATVVAS--RDLAAAETVQQIFSSERFRVYTNSDPLG 158 (308)
T ss_pred CeEEEEEe--CCHHHHHHHHHHhCCCcEEEEecCCchh
Confidence 22223333 3788899999999999988876666444
No 149
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=99.06 E-value=5.3e-09 Score=101.43 Aligned_cols=162 Identities=16% Similarity=0.107 Sum_probs=104.9
Q ss_pred eeEEEEc-CCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCcccccC
Q 008509 148 RKVAVIG-GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 226 (563)
Q Consensus 148 ~kv~ViG-aG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 226 (563)
+||+||| +|.||+++|..|+++|++|+++++++++++......... ....| +. ..+..+++.+.+++
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~---~~~~g-~~--------~~~~~~~~~ea~~~ 68 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEE---LGHGG-SD--------IKVTGADNAEAAKR 68 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhh---ccccC-CC--------ceEEEeChHHHHhc
Confidence 4799997 899999999999999999999999998876543211110 00111 00 01223344467889
Q ss_pred CCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCCCCCH-----------------HHHhhhccCCCceeecccCCCC
Q 008509 227 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL-----------------NIVGEKTSSQDRIIGAHFFSPA 289 (563)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS~l~i-----------------~~la~~~~~~~r~ig~hf~~P~ 289 (563)
+|+||.|+|... -.+++.++...+.. ++|++.+.+++. +.+++.++...+++..-...|.
T Consensus 69 aDvVilavp~~~--~~~~l~~l~~~l~~-~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~~~p~~~~VVka~~~~~a 145 (219)
T TIGR01915 69 ADVVILAVPWDH--VLKTLESLRDELSG-KLVISPVVPLASDGGKGARYLPPEEGSAAEQAAALLPETSRVVAAFHNLSA 145 (219)
T ss_pred CCEEEEECCHHH--HHHHHHHHHHhccC-CEEEEeccCceecCCCCceecCCCCCcHHHHHHHhCCCCCeEeeccccCCH
Confidence 999999998543 45667777766654 777776666654 3355555432567765332222
Q ss_pred C-------CCCeEEEEeCCCCCHHHHHHHHHHHHHh-CCceEEec
Q 008509 290 H-------VMPLLEIVRTERTSAQVILDLMTVGKII-KKVPVVVG 326 (563)
Q Consensus 290 ~-------~~~lvEiv~~~~t~~~~~~~~~~l~~~l-Gk~~v~~~ 326 (563)
. ..+.-..+.++ +++..+.+..+.+.+ |..|+.++
T Consensus 146 ~~~~~~~~~~~~~~~v~Gd--d~~ak~~v~~L~~~~~G~~~vd~G 188 (219)
T TIGR01915 146 VLLQDVDDEVDCDVLVCGD--DEEAKEVVAELAGRIDGLRALDAG 188 (219)
T ss_pred HHhcCCCCCCCCCEEEECC--CHHHHHHHHHHHHhcCCCCcccCC
Confidence 1 11222234443 567888899999999 99998875
No 150
>PLN02712 arogenate dehydrogenase
Probab=99.05 E-value=2.9e-09 Score=118.67 Aligned_cols=153 Identities=10% Similarity=0.053 Sum_probs=107.7
Q ss_pred ceeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCccc-cc
Q 008509 147 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE-FK 225 (563)
Q Consensus 147 ~~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-l~ 225 (563)
.++|+|||+|.||.++|..|...|++|++||++... +.+ .+.| +...++.+. +.
T Consensus 369 ~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~-~~a-----------~~~G-------------v~~~~~~~el~~ 423 (667)
T PLN02712 369 KLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYS-DEA-----------QKLG-------------VSYFSDADDLCE 423 (667)
T ss_pred CCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHH-HHH-----------HHcC-------------CeEeCCHHHHHh
Confidence 468999999999999999999999999999998542 211 1112 123344443 43
Q ss_pred -CCCEEEEecCCChHHHHHHHHHHHh-hCCCCeEEEecCCC--CCHHHHhhhccCCCceeecccCCCCCCCC--------
Q 008509 226 -DVDMVIEAVIESVPLKQKIFSELEK-ACPPHCILATNTST--IDLNIVGEKTSSQDRIIGAHFFSPAHVMP-------- 293 (563)
Q Consensus 226 -~aDlVieav~e~~~~k~~v~~~l~~-~~~~~~ii~sntS~--l~i~~la~~~~~~~r~ig~hf~~P~~~~~-------- 293 (563)
+||+||.|+|.. ....++.++.. .++++++|++.+|+ .++..+...++...+|++.||+.++....
T Consensus 424 ~~aDvVILavP~~--~~~~vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~~~~~v~~HPm~G~e~~~~G~~~~~~ 501 (667)
T PLN02712 424 EHPEVILLCTSIL--STEKVLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQDFDILCTHPMFGPESGKNGWNNLAF 501 (667)
T ss_pred cCCCEEEECCChH--HHHHHHHHHHHhcCCCCcEEEECCCccHHHHHHHHHhccCCCceEeeCCCCCccccccchhhhhh
Confidence 589999999953 44577777764 57889999988777 45566666655555799999998776431
Q ss_pred eEE--EEeCCCCCHHHHHHHHHHHHHhCCceEEec
Q 008509 294 LLE--IVRTERTSAQVILDLMTVGKIIKKVPVVVG 326 (563)
Q Consensus 294 lvE--iv~~~~t~~~~~~~~~~l~~~lGk~~v~~~ 326 (563)
+.+ ++.++....+.++.+.+++..+|..++.+.
T Consensus 502 lf~~~~v~~~~~~~~~~~~l~~l~~~lGa~vv~ms 536 (667)
T PLN02712 502 VFDKVRIGSDDRRVSRCDSFLDIFAREGCRMVEMS 536 (667)
T ss_pred hccCcEeCCCcchHHHHHHHHHHHHHcCCEEEEeC
Confidence 111 123334455666777799999998888873
No 151
>PRK08321 naphthoate synthase; Validated
Probab=99.04 E-value=5.4e-10 Score=113.52 Aligned_cols=96 Identities=19% Similarity=0.224 Sum_probs=82.5
Q ss_pred CccCCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCccchhccccCCCCChHHHHHHHHHHHHHHHhhCCCC
Q 008509 1 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM 80 (563)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (563)
|+|||++++|+||+++||||++||++++++.+.+++++++..+ +
T Consensus 200 l~ltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~------------------------------------~ 243 (302)
T PRK08321 200 IFFLGRTYSAEEAHDMGAVNAVVPHAELETEALEWAREINGKS------------------------------------P 243 (302)
T ss_pred HHHcCCccCHHHHHHCCCceEeeCHHHHHHHHHHHHHHHHhCC------------------------------------H
Confidence 5789999999999999999999999999999999999998743 3
Q ss_pred hhHHHHHHHHHHhhccCchhhHHHHHHHHHHHhcCHHHHHHHHHHhhhhhhcc
Q 008509 81 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 133 (563)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~~kr~~~k 133 (563)
.+...+|++++.... ...+....|.+.+..++.++++++++.+|++||++..
T Consensus 244 ~a~~~~K~~l~~~~~-~~~~~~~~e~~~~~~~~~~~d~~egi~af~ekr~p~~ 295 (302)
T PRK08321 244 TAMRMLKYAFNLTDD-GLVGQQLFAGEATRLAYMTDEAQEGRDAFLEKRDPDW 295 (302)
T ss_pred HHHHHHHHHHHhhhc-ccHHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCCC
Confidence 578888999887654 3444556789999999999999999999999987543
No 152
>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.
Probab=99.04 E-value=5.5e-10 Score=110.92 Aligned_cols=94 Identities=20% Similarity=0.272 Sum_probs=78.2
Q ss_pred CccCCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCccchhccccCCCCChHHHHHHHHHHHHHHHhhCCCC
Q 008509 1 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM 80 (563)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (563)
|++||++++|+||+++||||+|||++++.+.+.+++++++..+ +
T Consensus 158 lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~~------------------------------------~ 201 (256)
T TIGR03210 158 IWYLCRRYTAQEALAMGLVNAVVPHDQLDAEVQKWCDEIVEKS------------------------------------P 201 (256)
T ss_pred HHHhCCCcCHHHHHHcCCceeeeCHHHHHHHHHHHHHHHHhCC------------------------------------H
Confidence 5789999999999999999999999999999999999998753 3
Q ss_pred hhHHHHHHHHHHhhccCchhhHH-HHHHHHHHHhcCHHHHHHHHHHhhhhhhc
Q 008509 81 PQHQACLDVIEEGIVHGGYSGVL-KEAKVFKELVMLDTSRGLVHVFFAQRATS 132 (563)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~-~E~~~f~~l~~s~~~~~~~~aF~~kr~~~ 132 (563)
.+...+|++++...... ..++ .|...+..++.|+++++++.+|++||++.
T Consensus 202 ~a~~~~K~~l~~~~~~~--~~~~~~~~~~~~~~~~~~d~~e~~~af~~kr~p~ 252 (256)
T TIGR03210 202 TAIAIAKRSFNMDTAHQ--RGIAGMGMYALKLYYDTAESREGVKAFQEKRKPE 252 (256)
T ss_pred HHHHHHHHHHHHhhccc--chHHHHHHHHHHHHccChhHHHHHHHHhccCCCC
Confidence 57888899888765432 1222 35678888999999999999999998654
No 153
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=99.03 E-value=4.9e-08 Score=96.88 Aligned_cols=147 Identities=19% Similarity=0.183 Sum_probs=96.8
Q ss_pred hHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCc-ccccCCCEEEEecCCC
Q 008509 159 GSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKDVDMVIEAVIES 237 (563)
Q Consensus 159 G~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~aDlVieav~e~ 237 (563)
|.+||.+|+++||+|++||++.++.+... .+.+.+.| ...+++. +++++||+||.|+|..
T Consensus 32 GspMArnLlkAGheV~V~Drnrsa~e~e~------~e~LaeaG-------------A~~AaS~aEAAa~ADVVIL~LPd~ 92 (341)
T TIGR01724 32 GSRMAIEFAMAGHDVVLAEPNREFMSDDL------WKKVEDAG-------------VKVVSDDKEAAKHGEIHVLFTPFG 92 (341)
T ss_pred HHHHHHHHHHCCCEEEEEeCChhhhhhhh------hHHHHHCC-------------CeecCCHHHHHhCCCEEEEecCCH
Confidence 89999999999999999999987654211 11122333 2233333 6788999999999966
Q ss_pred hHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhhhc----cCCCceeecccCCCC--CCCCeE--EEEeC------CCC
Q 008509 238 VPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKT----SSQDRIIGAHFFSPA--HVMPLL--EIVRT------ERT 303 (563)
Q Consensus 238 ~~~k~~v~~~l~~~~~~~~ii~sntS~l~i~~la~~~----~~~~r~ig~hf~~P~--~~~~lv--Eiv~~------~~t 303 (563)
..+ ++++..+.+.++++++++. +||+++..+...+ +...+=+|..-|+|. +.++.- -++.+ .-.
T Consensus 93 aaV-~eVl~GLaa~L~~GaIVID-~STIsP~t~~~~~e~~l~~~r~d~~v~s~HP~~vP~~~~~~~~~~~~~~~~~~~~A 170 (341)
T TIGR01724 93 KGT-FSIARTIIEHVPENAVICN-TCTVSPVVLYYSLEKILRLKRTDVGISSMHPAAVPGTPQHGHYVIGGKPTAGKEMA 170 (341)
T ss_pred HHH-HHHHHHHHhcCCCCCEEEE-CCCCCHHHHHHHHHHHhhcCccccCeeccCCCCCCCCCCCceeeeccccccccccC
Confidence 554 4556778888999998764 5677776554433 222233444344433 122221 12222 234
Q ss_pred CHHHHHHHHHHHHHhCCceEEec
Q 008509 304 SAQVILDLMTVGKIIKKVPVVVG 326 (563)
Q Consensus 304 ~~~~~~~~~~l~~~lGk~~v~~~ 326 (563)
+++.++.+.++.+..|+.+.++.
T Consensus 171 ~ee~i~~~~el~~~~~~~~~~~p 193 (341)
T TIGR01724 171 TEEQISKCVELAKSTGKKAYVVP 193 (341)
T ss_pred CHHHHHHHHHHHHHhCCCeeecc
Confidence 78999999999999999999873
No 154
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=99.03 E-value=1.1e-08 Score=101.96 Aligned_cols=144 Identities=16% Similarity=0.154 Sum_probs=107.0
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCC----eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCc-c
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNI----YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S 222 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~----~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 222 (563)
+||+|||+|.||++|+..+.++|. +|+++|++++.. + +....+. +
T Consensus 4 mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~-----------------~-------------~~~~~~~~~ 53 (260)
T PTZ00431 4 IRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNT-----------------P-------------FVYLQSNEE 53 (260)
T ss_pred CEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcC-----------------C-------------eEEeCChHH
Confidence 479999999999999999999873 499999876531 0 1122232 4
Q ss_pred cccCCCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhhhccCCCceeecccCCCCCCCCeE-EEEeCC
Q 008509 223 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLL-EIVRTE 301 (563)
Q Consensus 223 ~l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS~l~i~~la~~~~~~~r~ig~hf~~P~~~~~lv-Eiv~~~ 301 (563)
.+.+||+||.|++.. .-.+++.++.++++++ +++|..++++++.+...++...+++.+.|..|.....-. -+.+..
T Consensus 54 ~~~~~D~Vilavkp~--~~~~vl~~i~~~l~~~-~iIS~~aGi~~~~l~~~~~~~~~vvr~mPn~p~~~g~g~t~i~~~~ 130 (260)
T PTZ00431 54 LAKTCDIIVLAVKPD--LAGKVLLEIKPYLGSK-LLISICGGLNLKTLEEMVGVEAKIVRVMPNTPSLVGQGSLVFCANN 130 (260)
T ss_pred HHHhCCEEEEEeCHH--HHHHHHHHHHhhccCC-EEEEEeCCccHHHHHHHcCCCCeEEEECCCchhHhcceeEEEEeCC
Confidence 567899999999744 5678888988877664 557888899999988877554456666666666544343 355666
Q ss_pred CCCHHHHHHHHHHHHHhCCceEE
Q 008509 302 RTSAQVILDLMTVGKIIKKVPVV 324 (563)
Q Consensus 302 ~t~~~~~~~~~~l~~~lGk~~v~ 324 (563)
..+++..+.+..++..+|....+
T Consensus 131 ~~~~~~~~~v~~l~~~~G~~~~v 153 (260)
T PTZ00431 131 NVDSTDKKKVIDIFSACGIIQEI 153 (260)
T ss_pred CCCHHHHHHHHHHHHhCCcEEEE
Confidence 77888999999999999987755
No 155
>PRK06144 enoyl-CoA hydratase; Provisional
Probab=99.01 E-value=8.5e-10 Score=109.94 Aligned_cols=92 Identities=20% Similarity=0.228 Sum_probs=78.8
Q ss_pred CccCCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCccchhccccCCCCChHHHHHHHHHHHHHHHhhCCCC
Q 008509 1 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM 80 (563)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (563)
|+++|++++|+||+++||||+|||++++.+.+.+++++++..+ +
T Consensus 167 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~i~~~~------------------------------------~ 210 (262)
T PRK06144 167 MLFTARLLEAEEALAAGLVNEVVEDAALDARADALAELLAAHA------------------------------------P 210 (262)
T ss_pred HHHcCCCcCHHHHHHcCCcCeecCHHHHHHHHHHHHHHHHhCC------------------------------------H
Confidence 5789999999999999999999999999999999999998753 2
Q ss_pred hhHHHHHHHHHHhhccCchhhHHHHHHHHHHHhcCHHHHHHHHHHhhhhhhc
Q 008509 81 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATS 132 (563)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~~kr~~~ 132 (563)
.+...+|+.++..... .++.+.+.+..++.++++++++.+|++||++.
T Consensus 211 ~a~~~~K~~l~~~~~~----~l~~~~~~~~~~~~~~~~~e~~~af~~kr~p~ 258 (262)
T PRK06144 211 LTLRATKEALRRLRRE----GLPDGDDLIRMCYMSEDFREGVEAFLEKRPPK 258 (262)
T ss_pred HHHHHHHHHHHHhhhc----CHHHHHHHHHHHhcChHHHHHHHHHhcCCCCC
Confidence 5778888888876443 44566778899999999999999999988653
No 156
>PRK06023 enoyl-CoA hydratase; Provisional
Probab=99.01 E-value=7.8e-10 Score=109.53 Aligned_cols=91 Identities=20% Similarity=0.214 Sum_probs=80.8
Q ss_pred CccCCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCccchhccccCCCCChHHHHHHHHHHHHHHHhhCCCC
Q 008509 1 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM 80 (563)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (563)
|+++|++++|+||+++||||+|||++++.+.+.+++++++..+ +
T Consensus 161 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~------------------------------------~ 204 (251)
T PRK06023 161 LLALGEGFSAEAAQEAGLIWKIVDEEAVEAETLKAAEELAAKP------------------------------------P 204 (251)
T ss_pred HHHhCCCCCHHHHHHcCCcceeeCHHHHHHHHHHHHHHHHhCC------------------------------------H
Confidence 4789999999999999999999999999999999999998743 3
Q ss_pred hhHHHHHHHHHHhhccCchhhHHHHHHHHHHHhcCHHHHHHHHHHhhh
Q 008509 81 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQ 128 (563)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~~k 128 (563)
.+...+|++++... .++.+++..|.+.+..++.|+++++++++|+++
T Consensus 205 ~a~~~~K~~l~~~~-~~l~~~~~~e~~~~~~~~~~~~~~e~~~af~e~ 251 (251)
T PRK06023 205 QALQIARDLMRGPR-EDILARIDEEAKHFAARLKSAEARAAFEAFMRR 251 (251)
T ss_pred HHHHHHHHHHHhch-hhHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcC
Confidence 57778899888764 468888999999999999999999999999874
No 157
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=99.00 E-value=6.4e-09 Score=103.36 Aligned_cols=140 Identities=17% Similarity=0.134 Sum_probs=101.9
Q ss_pred HHHHHHhCC--CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCcccccCCCEEEEecCCChH
Q 008509 162 IATAHILNN--IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVP 239 (563)
Q Consensus 162 iA~~la~~G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aDlVieav~e~~~ 239 (563)
||..|.++| ++|+.+|++++.++.+. +.|.++. ..++.+.+++||+||.|+|.+
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~-----------~~g~~~~-----------~~~~~~~~~~~DlvvlavP~~-- 56 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAAL-----------ELGIIDE-----------ASTDIEAVEDADLVVLAVPVS-- 56 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHH-----------HTTSSSE-----------EESHHHHGGCCSEEEE-S-HH--
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHH-----------HCCCeee-----------ccCCHhHhcCCCEEEEcCCHH--
Confidence 678888998 79999999999877653 4454331 222357889999999999854
Q ss_pred HHHHHHHHHHhhCCCCeEEEecCCCC--CHHHHhhhccCCCceeecccCCCCC------------CCCeEEEEeCCCCCH
Q 008509 240 LKQKIFSELEKACPPHCILATNTSTI--DLNIVGEKTSSQDRIIGAHFFSPAH------------VMPLLEIVRTERTSA 305 (563)
Q Consensus 240 ~k~~v~~~l~~~~~~~~ii~sntS~l--~i~~la~~~~~~~r~ig~hf~~P~~------------~~~lvEiv~~~~t~~ 305 (563)
....++.++.+.++++++|++.+|.- ++..+.+......+|+|.||+..+. ....+-++++..+++
T Consensus 57 ~~~~~l~~~~~~~~~~~iv~Dv~SvK~~~~~~~~~~~~~~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~~~~ 136 (258)
T PF02153_consen 57 AIEDVLEEIAPYLKPGAIVTDVGSVKAPIVEAMERLLPEGVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGEDTDP 136 (258)
T ss_dssp HHHHHHHHHHCGS-TTSEEEE--S-CHHHHHHHHHHHTSSGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTTS-H
T ss_pred HHHHHHHHhhhhcCCCcEEEEeCCCCHHHHHHHHHhcCcccceeecCCCCCCccccchhhcccccCCCeEEEeCCCCChH
Confidence 56789999999999999999887763 3445555555567999999988661 356777889999999
Q ss_pred HHHHHHHHHHHHhCCceEEe
Q 008509 306 QVILDLMTVGKIIKKVPVVV 325 (563)
Q Consensus 306 ~~~~~~~~l~~~lGk~~v~~ 325 (563)
+.++.+.+++..+|..++.+
T Consensus 137 ~~~~~~~~l~~~~Ga~~~~~ 156 (258)
T PF02153_consen 137 EALELVEELWEALGARVVEM 156 (258)
T ss_dssp HHHHHHHHHHHHCT-EEEE-
T ss_pred HHHHHHHHHHHHCCCEEEEc
Confidence 99999999999999988887
No 158
>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix. Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....
Probab=98.98 E-value=7e-10 Score=109.58 Aligned_cols=92 Identities=23% Similarity=0.293 Sum_probs=84.8
Q ss_pred CccCCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCccchhccccCCCCChHHHHHHHHHHHHHHHhhCCCC
Q 008509 1 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM 80 (563)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (563)
|+++|++++|+||+++||||+|+|+++|.+.+.+++++++..+ +
T Consensus 154 l~l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~------------------------------------~ 197 (245)
T PF00378_consen 154 LLLTGEPISAEEALELGLVDEVVPDEELDEEALELAKRLAAKP------------------------------------P 197 (245)
T ss_dssp HHHHTCEEEHHHHHHTTSSSEEESGGGHHHHHHHHHHHHHTSC------------------------------------H
T ss_pred cccccccchhHHHHhhcceeEEcCchhhhHHHHHHHHHHhcCC------------------------------------H
Confidence 4689999999999999999999999999999999999998853 2
Q ss_pred hhHHHHHHHHHHhhccCchhhHHHHHHHHHHHhcCHHHHHHHHHHhhh
Q 008509 81 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQ 128 (563)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~~k 128 (563)
.+...+|+.++......+.+.+..|.+.+..++.++++++++++|++|
T Consensus 198 ~a~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~f~eK 245 (245)
T PF00378_consen 198 SALRATKKALNRALEQSLEEALEFEQDLFAECFKSEDFQEGIAAFLEK 245 (245)
T ss_dssp HHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHhCc
Confidence 578889999999888889999999999999999999999999999986
No 159
>PRK05870 enoyl-CoA hydratase; Provisional
Probab=98.98 E-value=8e-10 Score=109.34 Aligned_cols=90 Identities=13% Similarity=-0.025 Sum_probs=81.7
Q ss_pred CccCCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCccchhccccCCCCChHHHHHHHHHHHHHHHhhCCCC
Q 008509 1 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM 80 (563)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (563)
|++||++++|+||+++||||+|| +++++.+.+++++++..+ +
T Consensus 159 l~ltg~~~~a~eA~~~Glv~~vv--~~l~~~a~~~a~~la~~~------------------------------------~ 200 (249)
T PRK05870 159 ALLFGMRFDAEAAVRHGLALMVA--DDPVAAALELAAGPAAAP------------------------------------R 200 (249)
T ss_pred HHHhCCccCHHHHHHcCCHHHHH--hhHHHHHHHHHHHHHhCC------------------------------------H
Confidence 57899999999999999999999 679999999999998753 3
Q ss_pred hhHHHHHHHHHHhhc-cCchhhHHHHHHHHHHHhcCHHHHHHHHHHhhh
Q 008509 81 PQHQACLDVIEEGIV-HGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQ 128 (563)
Q Consensus 81 ~A~~~~~~~i~~~~~-~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~~k 128 (563)
.+...+|+.++.... .+++++++.|...+..++.|+++++++++|+++
T Consensus 201 ~a~~~~K~~~~~~~~~~~l~~~~~~e~~~~~~~~~~~d~~eg~~af~~~ 249 (249)
T PRK05870 201 ELVLATKASMRATASLAQHAAAVEFELGPQAASVQSPEFAARLAAAQRR 249 (249)
T ss_pred HHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcC
Confidence 588899999998877 789999999999999999999999999999863
No 160
>PRK08260 enoyl-CoA hydratase; Provisional
Probab=98.97 E-value=1.5e-09 Score=110.06 Aligned_cols=99 Identities=14% Similarity=0.102 Sum_probs=81.8
Q ss_pred CccCCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCccchhccccCCCCChHHHHHHHHHHHHHHHhhCCCC
Q 008509 1 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM 80 (563)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (563)
|+|+|++++|+||+++||||+|||++++++.|.+++++++...+ +
T Consensus 177 llltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~i~~~~~-----------------------------------~ 221 (296)
T PRK08260 177 WVYSGRVFDAQEALDGGLVRSVHPPDELLPAARALAREIADNTS-----------------------------------P 221 (296)
T ss_pred HHHcCCccCHHHHHHCCCceeecCHHHHHHHHHHHHHHHHhcCC-----------------------------------h
Confidence 57899999999999999999999999999999999999887311 2
Q ss_pred hhHHHHHHHHHHhhccC-chhhHHHHHHHHHHHhcCHHHHHHHHHHhhhhhhccC
Q 008509 81 PQHQACLDVIEEGIVHG-GYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 134 (563)
Q Consensus 81 ~A~~~~~~~i~~~~~~~-~~~~l~~E~~~f~~l~~s~~~~~~~~aF~~kr~~~k~ 134 (563)
.++..+|++++...... ..+.+..|...+..++.|+++++++.+|+++|++...
T Consensus 222 ~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~egi~af~~kr~p~f~ 276 (296)
T PRK08260 222 VSVALTRQMMWRMAGADHPMEAHRVDSRAIYSRGRSGDGKEGVSSFLEKRPAVFP 276 (296)
T ss_pred HHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHccChhHHHHHHHHhcCCCCCCC
Confidence 47888999998764322 2234466888899999999999999999999876543
No 161
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=98.97 E-value=4.1e-08 Score=105.16 Aligned_cols=203 Identities=16% Similarity=0.189 Sum_probs=124.6
Q ss_pred ceeEEEEcCCcchHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHH----HHHHHHHHHcCCCCHHHHHhhhcCeeeecC
Q 008509 147 VRKVAVIGGGLMGSGIATAHILN--NIYVVLKEVNSEYLLKGIKTI----EANVRGLVTRGKLTQDKANNALKMLKGVLD 220 (563)
Q Consensus 147 ~~kv~ViGaG~mG~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~i----~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~ 220 (563)
+++|+|||+|.+|..+|..|+.+ |++|+.+|+++++++...+.. +..++.++.++ .-.++..+++
T Consensus 1 ~m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~---------~~~~l~~t~~ 71 (473)
T PLN02353 1 MVKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQC---------RGKNLFFSTD 71 (473)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHh---------hcCCEEEEcC
Confidence 36899999999999999999988 588999999999988754321 11111111110 1124888898
Q ss_pred cc-cccCCCEEEEecCCCh-------------HHHHHHHHHHHhhCCCCeEEEecCCCCCHH---HHhhhccCCCceeec
Q 008509 221 YS-EFKDVDMVIEAVIESV-------------PLKQKIFSELEKACPPHCILATNTSTIDLN---IVGEKTSSQDRIIGA 283 (563)
Q Consensus 221 ~~-~l~~aDlVieav~e~~-------------~~k~~v~~~l~~~~~~~~ii~sntS~l~i~---~la~~~~~~~r~ig~ 283 (563)
++ ++++||++|.|||... ....++.++|.++++++++|+. .|+.|+. .+...+..... |.
T Consensus 72 ~~~~i~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~-~STvp~Gtt~~~~~~l~~~~~--g~ 148 (473)
T PLN02353 72 VEKHVAEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVE-KSTVPVKTAEAIEKILTHNSK--GI 148 (473)
T ss_pred HHHHHhcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEE-eCCCCCChHHHHHHHHHhhCC--CC
Confidence 75 7999999999996332 3556777889999999887653 3444433 33322211000 11
Q ss_pred cc---CCCCCCC---------CeEEEE-eCCC--CCHHHHHHHHHHHHHhCC-ceEEecCc-----chhhhHHH---HHH
Q 008509 284 HF---FSPAHVM---------PLLEIV-RTER--TSAQVILDLMTVGKIIKK-VPVVVGNC-----TGFAVNRA---FFP 339 (563)
Q Consensus 284 hf---~~P~~~~---------~lvEiv-~~~~--t~~~~~~~~~~l~~~lGk-~~v~~~d~-----~Gfi~nRl---~~~ 339 (563)
.| |+|-... ..--+| .+.. +.++..+.+.+++..+-+ .++.+.+. -..+.|-. -.+
T Consensus 149 ~f~v~~~PErl~~G~a~~d~~~p~riViG~~~~~~~~~a~~~~~~lY~~~~~~~~i~~~s~~~AE~~K~~eN~~ra~~Ia 228 (473)
T PLN02353 149 NFQILSNPEFLAEGTAIEDLFKPDRVLIGGRETPEGQKAVQALKDVYAHWVPEERIITTNLWSAELSKLAANAFLAQRIS 228 (473)
T ss_pred CeEEEECCCccCCCCcccccCCCCEEEEccCCchhhHHHHHHHHHHHHHhhcCCCEEecCHHHHHHHHHHHHHHHHHHHH
Confidence 11 2333211 111133 4321 225678888888887643 45554321 22333433 246
Q ss_pred HHHHHHHHHHC-CCCHHHHHHHH
Q 008509 340 YSQSARLLVSL-GVDVFRIDSAI 361 (563)
Q Consensus 340 ~~~Ea~~l~~~-G~~~~~ID~a~ 361 (563)
++||...+.+. |+++.+|-.++
T Consensus 229 f~NEla~lce~~giD~~eV~~~~ 251 (473)
T PLN02353 229 SVNAMSALCEATGADVSQVSHAV 251 (473)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHh
Confidence 89998777755 99999988888
No 162
>PRK06072 enoyl-CoA hydratase; Provisional
Probab=98.96 E-value=1.9e-09 Score=106.61 Aligned_cols=93 Identities=17% Similarity=0.118 Sum_probs=81.8
Q ss_pred CccCCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCccchhccccCCCCChHHHHHHHHHHHHHHHhhCCCC
Q 008509 1 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM 80 (563)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (563)
|+|||++++|+||+++||||.+ +++++.|.++|++++..+ +
T Consensus 152 lll~g~~~~a~eA~~~Glv~~~---~~~~~~a~~~a~~la~~~------------------------------------~ 192 (248)
T PRK06072 152 ILVLGGEFTAEEAERWGLLKIS---EDPLSDAEEMANRISNGP------------------------------------F 192 (248)
T ss_pred HHHhCCccCHHHHHHCCCcccc---chHHHHHHHHHHHHHhCC------------------------------------H
Confidence 5789999999999999999963 457889999999998743 2
Q ss_pred hhHHHHHHHHHHhhccCchhhHHHHHHHHHHHhcCHHHHHHHHHHhhhhhhc
Q 008509 81 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATS 132 (563)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~~kr~~~ 132 (563)
.+...+|++++.....++++.++.|.+.+..++.|+++++++.+|++||++.
T Consensus 193 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~ 244 (248)
T PRK06072 193 QSYIAAKRMINLVLYNDLEEFLEYESAIQGYLGKTEDFKEGISSFKEKREPK 244 (248)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhCChhHHHHHHHHhcCCCCC
Confidence 5788899999988778899999999999999999999999999999998754
No 163
>PRK07509 enoyl-CoA hydratase; Provisional
Probab=98.96 E-value=1.5e-09 Score=108.27 Aligned_cols=93 Identities=19% Similarity=0.199 Sum_probs=83.0
Q ss_pred CccCCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCccchhccccCCCCChHHHHHHHHHHHHHHHhhCCCC
Q 008509 1 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM 80 (563)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (563)
|+|||++++|+||+++||||+|++ ++.+.+.++++++++.+ +
T Consensus 166 l~ltg~~~~a~eA~~~Glv~~vv~--~~~~~a~~~a~~l~~~~------------------------------------~ 207 (262)
T PRK07509 166 LTYTARVFSAEEALELGLVTHVSD--DPLAAALALAREIAQRS------------------------------------P 207 (262)
T ss_pred HHHcCCCcCHHHHHHcCChhhhhc--hHHHHHHHHHHHHHhCC------------------------------------H
Confidence 578999999999999999999995 37889999999988743 3
Q ss_pred hhHHHHHHHHHHhhccCchhhHHHHHHHHHHHhcCHHHHHHHHHHhhhhhh
Q 008509 81 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRAT 131 (563)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~~kr~~ 131 (563)
.+...+|+.++.....++++++..|.+.+..++.++++++++.+|++||++
T Consensus 208 ~~~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~af~ekr~p 258 (262)
T PRK07509 208 DAIAAAKRLINRSWTASVRALLARESVEQIRLLLGKNQKIAVKAQMKKRAP 258 (262)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCC
Confidence 578889999998888889999999999999999999999999999998864
No 164
>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.
Probab=98.94 E-value=2.8e-09 Score=105.42 Aligned_cols=94 Identities=19% Similarity=0.270 Sum_probs=78.1
Q ss_pred CccCCCCCCHHHHHhCCCcceecCCchHHHHHHHH-HHhhhccCCccchhccccCCCCChHHHHHHHHHHHHHHHhhCCC
Q 008509 1 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLW-ALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 79 (563)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~-a~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (563)
|+|||++++|+||+++||||+|+|+++ +.+.++ +++++..+
T Consensus 152 l~ltg~~~~a~eA~~~Glv~~v~~~~~--~~a~~~~a~~la~~~------------------------------------ 193 (251)
T TIGR03189 152 LLYSGRSIDGAEGARIGLANAVAEDPE--NAALAWFDEHPAKLS------------------------------------ 193 (251)
T ss_pred HHHcCCCCCHHHHHHCCCcceecCcHH--HHHHHHHHHHHHhCC------------------------------------
Confidence 578999999999999999999997543 566666 57777643
Q ss_pred ChhHHHHHHHHHHhhccCchhhHH-HHHHHHHHHhcCHHHHHHHHHHhhhhhhc
Q 008509 80 MPQHQACLDVIEEGIVHGGYSGVL-KEAKVFKELVMLDTSRGLVHVFFAQRATS 132 (563)
Q Consensus 80 ~~A~~~~~~~i~~~~~~~~~~~l~-~E~~~f~~l~~s~~~~~~~~aF~~kr~~~ 132 (563)
+.|+..+|++++.....++++++. .|...+..++.|+++++++.+|++||++.
T Consensus 194 p~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~ 247 (251)
T TIGR03189 194 ASSLRFAVRAARLGMNERVKAKIAEVEALYLEELMATHDAVEGLNAFLEKRPAL 247 (251)
T ss_pred HHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhcCCCC
Confidence 357888999998887778877764 78889999999999999999999998754
No 165
>PRK07327 enoyl-CoA hydratase; Provisional
Probab=98.94 E-value=2.4e-09 Score=107.10 Aligned_cols=92 Identities=18% Similarity=0.108 Sum_probs=74.6
Q ss_pred CccCCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCccchhccccCCCCChHHHHHHHHHHHHHHHhhCCCC
Q 008509 1 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM 80 (563)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (563)
|+|||++++|+||+++||||+|+|+++|++.|.++++++++.+ +
T Consensus 170 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~------------------------------------~ 213 (268)
T PRK07327 170 YLLLCEPVSGEEAERIGLVSLAVDDDELLPKALEVAERLAAGS------------------------------------Q 213 (268)
T ss_pred HHHcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHcCC------------------------------------H
Confidence 5789999999999999999999999999999999999998753 2
Q ss_pred hhHHHHHHHHHHhhc---cCchhhHHHHHHHHHHHhcCHHHHHHHHHHhhhhhhc
Q 008509 81 PQHQACLDVIEEGIV---HGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATS 132 (563)
Q Consensus 81 ~A~~~~~~~i~~~~~---~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~~kr~~~ 132 (563)
.+...+|++++.... .+++..+..| ..++.|+++++++.+|++||++.
T Consensus 214 ~a~~~~K~~l~~~~~~~~~~~~~~~~~~----~~~~~~~d~~eg~~af~ekr~p~ 264 (268)
T PRK07327 214 TAIRWTKYALNNWLRMAGPTFDTSLALE----FMGFSGPDVREGLASLREKRAPD 264 (268)
T ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHHH----HHHccChhHHHHHHHHHhcCCCC
Confidence 477788888876432 1344444444 34678999999999999998754
No 166
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=98.93 E-value=6.1e-09 Score=97.90 Aligned_cols=108 Identities=20% Similarity=0.240 Sum_probs=73.2
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHH--------HHHHHHHHHHcCCCCHHHHHhhhcCeeeec
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT--------IEANVRGLVTRGKLTQDKANNALKMLKGVL 219 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~--------i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~ 219 (563)
+||+|||+|.+|..+|..|+.+||+|+.+|+|++.++...+. +...+.+..+. .++.+++
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~------------~~l~~t~ 68 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSA------------GRLRATT 68 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHT------------TSEEEES
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhcccccc------------ccchhhh
Confidence 589999999999999999999999999999999988875422 11222222211 4678888
Q ss_pred Ccc-cccCCCEEEEecCCC--------hHHHHHHHHHHHhhCCCCeEEEecCCCCCHH
Q 008509 220 DYS-EFKDVDMVIEAVIES--------VPLKQKIFSELEKACPPHCILATNTSTIDLN 268 (563)
Q Consensus 220 ~~~-~l~~aDlVieav~e~--------~~~k~~v~~~l~~~~~~~~ii~sntS~l~i~ 268 (563)
+.+ ++.+||++|.|||.. +..-.+..+.|.++++++++++- -||.++.
T Consensus 69 ~~~~ai~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~-~STvppG 125 (185)
T PF03721_consen 69 DIEEAIKDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVI-ESTVPPG 125 (185)
T ss_dssp EHHHHHHH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEE-SSSSSTT
T ss_pred hhhhhhhccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEE-ccEEEEe
Confidence 885 589999999999743 34456778899999999887754 5555554
No 167
>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=98.93 E-value=2.4e-09 Score=106.29 Aligned_cols=92 Identities=11% Similarity=0.071 Sum_probs=78.3
Q ss_pred CccCCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCccchhccccCCCCChHHHHHHHHHHHHHHHhhCCCC
Q 008509 1 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM 80 (563)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (563)
|+++|++++|+||+++||||+|||+++. .+.+++++++..+ +
T Consensus 159 l~l~g~~~~a~eA~~~Glv~~vv~~~~~--~~~~~a~~l~~~~------------------------------------p 200 (255)
T PRK07112 159 MTLMTQPVTAQQAFSWGLVDAYGANSDT--LLRKHLLRLRCLN------------------------------------K 200 (255)
T ss_pred HHHhCCcccHHHHHHcCCCceecCcHHH--HHHHHHHHHHhCC------------------------------------H
Confidence 5789999999999999999999987653 5677888887643 3
Q ss_pred hhHHHHHHHHHHhhccCchhhHHHHHHHHHHHhcCHHHHHHHHHHhhhhhh
Q 008509 81 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRAT 131 (563)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~~kr~~ 131 (563)
.+...+|++++.. ..+++++++.|.+.+..++.|+++++++.+|++||++
T Consensus 201 ~a~~~~K~~~~~~-~~~~~~~~~~e~~~~~~~~~~~~~~eg~~af~~kr~p 250 (255)
T PRK07112 201 AAVARYKSYASTL-DDTVAAARPAALAANIEMFADPENLRKIARYVETGKF 250 (255)
T ss_pred HHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHcChHHHHHHHHHHcCCCC
Confidence 5778889988865 4568899999999999999999999999999998864
No 168
>PLN02712 arogenate dehydrogenase
Probab=98.92 E-value=2.6e-08 Score=111.15 Aligned_cols=153 Identities=16% Similarity=0.103 Sum_probs=104.5
Q ss_pred ceeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCccc-c-
Q 008509 147 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE-F- 224 (563)
Q Consensus 147 ~~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-l- 224 (563)
-++|+|||+|.||..+|..|.+.|++|++||++... +.+ .+.| +...++.++ +
T Consensus 52 ~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~-~~A-----------~~~G-------------v~~~~d~~e~~~ 106 (667)
T PLN02712 52 QLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHS-LAA-----------RSLG-------------VSFFLDPHDLCE 106 (667)
T ss_pred CCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHH-HHH-----------HHcC-------------CEEeCCHHHHhh
Confidence 358999999999999999999999999999998543 111 1112 223444433 3
Q ss_pred cCCCEEEEecCCChHHHHHHHHHHH-hhCCCCeEEEecCCCC--CHHHHhhhccCCCceeecccCCCCCCC-----CeEE
Q 008509 225 KDVDMVIEAVIESVPLKQKIFSELE-KACPPHCILATNTSTI--DLNIVGEKTSSQDRIIGAHFFSPAHVM-----PLLE 296 (563)
Q Consensus 225 ~~aDlVieav~e~~~~k~~v~~~l~-~~~~~~~ii~sntS~l--~i~~la~~~~~~~r~ig~hf~~P~~~~-----~lvE 296 (563)
.+||+||.|+|.+ ...+++.++. ..++++++|++.+|.- ++..+...++....|+|+||+..+... ....
T Consensus 107 ~~aDvViLavP~~--~~~~vl~~l~~~~l~~g~iVvDv~SvK~~~~~~l~~~l~~~~~~v~~HPMaG~e~~~~g~~~~~~ 184 (667)
T PLN02712 107 RHPDVILLCTSII--STENVLKSLPLQRLKRNTLFVDVLSVKEFAKNLLLDYLPEDFDIICSHPMFGPQSAKHGWDGLRF 184 (667)
T ss_pred cCCCEEEEcCCHH--HHHHHHHhhhhhcCCCCeEEEECCCCcHHHHHHHHHhcCCCCeEEeeCCcCCCccccchhccCcE
Confidence 5699999999953 4567778775 5678899988776653 234455555444579999998766411 1112
Q ss_pred EEe-----CCCCCHHHHHHHHHHHHHhCCceEEec
Q 008509 297 IVR-----TERTSAQVILDLMTVGKIIKKVPVVVG 326 (563)
Q Consensus 297 iv~-----~~~t~~~~~~~~~~l~~~lGk~~v~~~ 326 (563)
+.. .+....+.++.+.++++.+|..++.+.
T Consensus 185 ~~~~~~~~~~~~~~~~~~~l~~l~~~lGa~v~~ms 219 (667)
T PLN02712 185 VYEKVRIGNEELRVSRCKSFLEVFEREGCKMVEMS 219 (667)
T ss_pred EEeeccCCCccccHHHHHHHHHHHHHcCCEEEEeC
Confidence 222 222334567778899999999998884
No 169
>PRK07827 enoyl-CoA hydratase; Provisional
Probab=98.91 E-value=3.2e-09 Score=105.82 Aligned_cols=93 Identities=13% Similarity=0.150 Sum_probs=83.4
Q ss_pred CccCCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCccchhccccCCCCChHHHHHHHHHHHHHHHhhCCCC
Q 008509 1 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM 80 (563)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (563)
|+++|++++|+||+++||||++++ ++.+.+.+++++++..+ +
T Consensus 164 l~l~g~~~~a~eA~~~Glv~~v~~--~l~~~a~~~a~~la~~~------------------------------------~ 205 (260)
T PRK07827 164 YYLTGEKFGAAEAARIGLVTAAAD--DVDAAVAALLADLRRGS------------------------------------P 205 (260)
T ss_pred HHHhCCccCHHHHHHcCCcccchH--HHHHHHHHHHHHHHhCC------------------------------------H
Confidence 578999999999999999999974 58999999999988743 3
Q ss_pred hhHHHHHHHHHHhhccCchhhHHHHHHHHHHHhcCHHHHHHHHHHhhhhhh
Q 008509 81 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRAT 131 (563)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~~kr~~ 131 (563)
.+...+|+.++.....++++.++.|...+..++.++++++++.+|.+||++
T Consensus 206 ~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~kr~p 256 (260)
T PRK07827 206 QGLAESKALTTAAVLAGFDRDAEELTEESARLFVSDEAREGMTAFLQKRPP 256 (260)
T ss_pred HHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCC
Confidence 588899999999888889999999999999999999999999999998764
No 170
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=98.90 E-value=5.6e-08 Score=103.63 Aligned_cols=177 Identities=15% Similarity=0.133 Sum_probs=119.7
Q ss_pred chHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCccc----ccCCCEEEEe
Q 008509 158 MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE----FKDVDMVIEA 233 (563)
Q Consensus 158 mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~----l~~aDlViea 233 (563)
||..||.+|+++|++|++|||++++.+...+. .|. . ..+....++++ ++.+|+||.+
T Consensus 1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~----------~g~-~--------~g~~~~~s~~e~v~~l~~~~~Ii~m 61 (459)
T PRK09287 1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAE----------EGK-G--------KKIVPAYTLEEFVASLEKPRKILLM 61 (459)
T ss_pred CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHh----------hCC-C--------CCeEeeCCHHHHHhhCCCCCEEEEE
Confidence 89999999999999999999999987764310 110 0 12344555533 3358999999
Q ss_pred cCCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHH--HHhhhccCCCceeecccCC-CCC-------CCCeEEEEeCCCC
Q 008509 234 VIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTSSQDRIIGAHFFS-PAH-------VMPLLEIVRTERT 303 (563)
Q Consensus 234 v~e~~~~k~~v~~~l~~~~~~~~ii~sntS~l~i~--~la~~~~~~~r~ig~hf~~-P~~-------~~~lvEiv~~~~t 303 (563)
||....+ .+++..+.+.+.++.||+..+++.+-+ +.++.+.. .|.||+. |+. ..+ . ++.| .
T Consensus 62 v~~g~~v-~~Vi~~l~~~l~~GdiiID~gn~~~~~t~~~~~~l~~----~Gi~fvdapVSGG~~gA~~G~-s-iM~G--G 132 (459)
T PRK09287 62 VKAGAPV-DAVIEQLLPLLEKGDIIIDGGNSNYKDTIRREKELAE----KGIHFIGMGVSGGEEGALHGP-S-IMPG--G 132 (459)
T ss_pred CCCchHH-HHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHHHHh----cCCeEEecCCCCCHHHHhcCC-E-EEEe--C
Confidence 9988665 456688889999999888765444333 33333321 2556654 332 234 3 3433 3
Q ss_pred CHHHHHHHHHHHHHhCCce-------EEecC-cchh---hh-HHHHH---HHHHHHHHHHHC--CCCHHHHHHHHH
Q 008509 304 SAQVILDLMTVGKIIKKVP-------VVVGN-CTGF---AV-NRAFF---PYSQSARLLVSL--GVDVFRIDSAIR 362 (563)
Q Consensus 304 ~~~~~~~~~~l~~~lGk~~-------v~~~d-~~Gf---i~-nRl~~---~~~~Ea~~l~~~--G~~~~~ID~a~~ 362 (563)
++++++.++++++.++..+ .++++ ..|. ++ |-+.. ..+.|++.+++. |++++++-.++.
T Consensus 133 ~~~a~~~~~piL~~ia~~~~~g~~c~~~vG~~GaGh~vKmvhN~ie~~~mq~iaEa~~l~~~~~Gl~~~~l~~v~~ 208 (459)
T PRK09287 133 QKEAYELVAPILEKIAAKVEDGEPCVTYIGPDGAGHYVKMVHNGIEYGDMQLIAEAYDLLKDGLGLSAEEIADVFA 208 (459)
T ss_pred CHHHHHHHHHHHHHHhhhhcCCCCceeeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 7899999999999999776 77765 3332 33 44433 346799999883 889999988873
No 171
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.90 E-value=4.8e-08 Score=101.20 Aligned_cols=178 Identities=14% Similarity=0.087 Sum_probs=110.6
Q ss_pred ccceeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCc-cc
Q 008509 145 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 223 (563)
Q Consensus 145 ~~~~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 223 (563)
+.++||+|||+|.||+.+|..|+++| +|++|.++++..+...+.- .....+.. . .....++..++|+ ++
T Consensus 5 ~~~mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~-------~~~~~l~~-~-~~l~~~i~~t~d~~~a 74 (341)
T PRK12439 5 KREPKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNH-------RNSRYLGN-D-VVLSDTLRATTDFAEA 74 (341)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcC-------CCcccCCC-C-cccCCCeEEECCHHHH
Confidence 34578999999999999999999999 7999999998876643210 00000000 0 0112346667777 46
Q ss_pred ccCCCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCCCCCH-------HHHhhhccCCCceee-cccCCCC---CCC
Q 008509 224 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL-------NIVGEKTSSQDRIIG-AHFFSPA---HVM 292 (563)
Q Consensus 224 l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS~l~i-------~~la~~~~~~~r~ig-~hf~~P~---~~~ 292 (563)
+.++|+||.|||.. .-+++++++.+.++++++++|.+.++.. +.+.+.+.. .++.. ..|-.+. ...
T Consensus 75 ~~~aDlVilavps~--~~~~vl~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~~l~~-~~~~~l~GP~~a~ev~~g~ 151 (341)
T PRK12439 75 ANCADVVVMGVPSH--GFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEEVLPG-HPAGILAGPNIAREVAEGY 151 (341)
T ss_pred HhcCCEEEEEeCHH--HHHHHHHHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHHHcCC-CCeEEEECCCHHHHHHcCC
Confidence 89999999999854 4678899999999998877766666654 234444431 12111 1111111 122
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHhCCceEEecCcchhhhHHHH
Q 008509 293 PLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAF 337 (563)
Q Consensus 293 ~lvEiv~~~~t~~~~~~~~~~l~~~lGk~~v~~~d~~Gfi~nRl~ 337 (563)
+...++.. .+++..+.+.+++..-+..+....|..|-..--.+
T Consensus 152 ~t~~via~--~~~~~~~~v~~lf~~~~~~v~~s~Di~gve~~~al 194 (341)
T PRK12439 152 AAAAVLAM--PDQHLATRLSPLFRTRRFRVYTTDDVVGVEMAGAL 194 (341)
T ss_pred CeEEEEEe--CCHHHHHHHHHHhCCCCEEEEEcCchHHHHHHHHH
Confidence 22223333 26777788888888777777776776665444433
No 172
>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional
Probab=98.89 E-value=1.6e-09 Score=111.75 Aligned_cols=127 Identities=14% Similarity=0.089 Sum_probs=82.6
Q ss_pred CccCCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHh-----------hhc-cCC--cc---------chhccccCCCC
Q 008509 1 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALD-----------IAA-RRK--PW---------IRSLHRTDKLG 57 (563)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~-----------~~~-~~~--p~---------~~~~~~~~~~~ 57 (563)
|+|||++++|+||+++||||+|||++++.+...++++. +.. ... |- ...+... .
T Consensus 163 llltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~ 239 (342)
T PRK05617 163 LALTGARISAADALYAGLADHFVPSADLPALLDALISLRWDSGADVVDAALAAFATPAPASELAAQRAWIDECFAG---D 239 (342)
T ss_pred HHHcCCCCCHHHHHHcCCcceecCHHHHHHHHHHHHhcCCccchhHHHHHHHHhccCCCcchhHHHHHHHHHHhCC---C
Confidence 57899999999999999999999998887764333310 000 000 00 0000000 0
Q ss_pred ChHHHHHHHH-----HHHHHHH-hhCCCChhHHHHHHHHHHhhccCchhhHHHHHHHHHHHhcCHHHHHHHHHHh-hh-h
Q 008509 58 SLSEAREVLK-----LARLQAK-KTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFF-AQ-R 129 (563)
Q Consensus 58 ~~~~~~~~~~-----~~~~~~~-~~~~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~-~k-r 129 (563)
+........+ .+....+ -..+.+.++..+|++++.+...+++++++.|...+..++.++++++++++|+ +| |
T Consensus 240 ~~~~~~~~l~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~egv~afl~ek~r 319 (342)
T PRK05617 240 TVEDIIAALEADGGEFAAKTADTLRSRSPTSLKVTLEQLRRARGLTLEECLRRELRLALAMLRSPDFVEGVRAVLIDKDR 319 (342)
T ss_pred CHHHHHHHHHhccHHHHHHHHHHHHhCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCchhhccceEEEcCCC
Confidence 0000000000 1222222 2334577999999999998888999999999999999999999999999997 65 4
Q ss_pred h
Q 008509 130 A 130 (563)
Q Consensus 130 ~ 130 (563)
+
T Consensus 320 ~ 320 (342)
T PRK05617 320 N 320 (342)
T ss_pred C
Confidence 4
No 173
>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=98.87 E-value=6.3e-09 Score=102.91 Aligned_cols=90 Identities=13% Similarity=0.063 Sum_probs=81.8
Q ss_pred CccCCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCccchhccccCCCCChHHHHHHHHHHHHHHHhhCCCC
Q 008509 1 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM 80 (563)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (563)
|++||++++|+||+++||||+|||++++++.|.++++++++.+ +
T Consensus 158 llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~------------------------------------~ 201 (249)
T PRK07110 158 MLLTARYYRGAELKKRGVPFPVLPRAEVLEKALELARSLAEKP------------------------------------R 201 (249)
T ss_pred HHHcCCccCHHHHHHcCCCeEEeChHHHHHHHHHHHHHHHhCC------------------------------------H
Confidence 5789999999999999999999999999999999999998753 2
Q ss_pred hhHHHHHHHHHHhhccCchhhHHHHHHHHHHHhcCHHHHHHHHHHh
Q 008509 81 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFF 126 (563)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~ 126 (563)
.+...+|+.++.....+++++++.|...+..++.|+++++++...+
T Consensus 202 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~~~~ 247 (249)
T PRK07110 202 HSLVLLKDHLVADRRRRLPEVIEQEVAMHEKTFHQPEVKRRIESLY 247 (249)
T ss_pred HHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHhCCHhHHHHHHHhc
Confidence 5788899999998888999999999999999999999999987653
No 174
>PRK07854 enoyl-CoA hydratase; Provisional
Probab=98.87 E-value=6e-09 Score=102.64 Aligned_cols=90 Identities=17% Similarity=0.187 Sum_probs=77.7
Q ss_pred CccCCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCccchhccccCCCCChHHHHHHHHHHHHHHHhhCCCC
Q 008509 1 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM 80 (563)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (563)
|+|||++++|+||+++||||+|++ + +.+.++++++++.+ +
T Consensus 150 l~ltg~~~~a~eA~~~Glv~~v~~---~-~~a~~~a~~l~~~~------------------------------------~ 189 (243)
T PRK07854 150 MLLGAEKLTAEQALATGMANRIGT---L-ADAQAWAAEIAGLA------------------------------------P 189 (243)
T ss_pred HHHcCCCcCHHHHHHCCCcccccC---H-HHHHHHHHHHHhCC------------------------------------H
Confidence 578999999999999999999975 2 37889999988743 3
Q ss_pred hhHHHHHHHHHHhhccCchhhHHHHHHHHHHHhcCHHHHHHHHHHhhhhhhc
Q 008509 81 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATS 132 (563)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~~kr~~~ 132 (563)
.+...+|+.++.. .+++++++.|...+..++.|+++++++.+|+++|++.
T Consensus 190 ~a~~~~K~~l~~~--~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~ 239 (243)
T PRK07854 190 LALQHAKRVLNDD--GAIEEAWPAHKELFDKAWASQDAIEAQVARIEKRPPK 239 (243)
T ss_pred HHHHHHHHHHHcc--CCHHHHHHHHHHHHHHHhcCchHHHHHHHHhCCCCCC
Confidence 5788889988875 5688999999999999999999999999999988654
No 175
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=98.85 E-value=8e-09 Score=86.36 Aligned_cols=91 Identities=21% Similarity=0.225 Sum_probs=67.6
Q ss_pred eEEEEcCCcchHHHHHHHHhCC---CeEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCcccc
Q 008509 149 KVAVIGGGLMGSGIATAHILNN---IYVVLK-EVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF 224 (563)
Q Consensus 149 kv~ViGaG~mG~~iA~~la~~G---~~V~l~-d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l 224 (563)
||+|||+|.||.+|+..|..+| ++|.++ +++++++++..++ .+ ..+...+..+.+
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~----------~~-----------~~~~~~~~~~~~ 59 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKE----------YG-----------VQATADDNEEAA 59 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHH----------CT-----------TEEESEEHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHh----------hc-----------cccccCChHHhh
Confidence 7999999999999999999999 999966 9999987764321 11 012222344778
Q ss_pred cCCCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCC
Q 008509 225 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 263 (563)
Q Consensus 225 ~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS 263 (563)
+++|+||.|||.. .-.+++.++ ....++.+++|.+.
T Consensus 60 ~~advvilav~p~--~~~~v~~~i-~~~~~~~~vis~~a 95 (96)
T PF03807_consen 60 QEADVVILAVKPQ--QLPEVLSEI-PHLLKGKLVISIAA 95 (96)
T ss_dssp HHTSEEEE-S-GG--GHHHHHHHH-HHHHTTSEEEEEST
T ss_pred ccCCEEEEEECHH--HHHHHHHHH-hhccCCCEEEEeCC
Confidence 8999999999855 456888888 67778888887654
No 176
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=98.85 E-value=9.6e-08 Score=89.44 Aligned_cols=152 Identities=20% Similarity=0.191 Sum_probs=101.8
Q ss_pred ceeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHHH-HHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCccccc
Q 008509 147 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY-LLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 225 (563)
Q Consensus 147 ~~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~-~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 225 (563)
|++++|+|+|.||+++|..|+.+||+|++-.++.+. ++.+.+ .....+++.+..++++
T Consensus 1 m~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~---------------------~l~~~i~~~~~~dA~~ 59 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAA---------------------ALGPLITGGSNEDAAA 59 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHH---------------------hhccccccCChHHHHh
Confidence 478999999999999999999999999999666554 333211 1112355666678899
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCCCC----------------CHH-HHhhhccCCCceeecccCC-
Q 008509 226 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI----------------DLN-IVGEKTSSQDRIIGAHFFS- 287 (563)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS~l----------------~i~-~la~~~~~~~r~ig~hf~~- 287 (563)
.||+||.+||=. --..+.+++...+. +.|+++.|-.+ +.+ .+++.++.+ +++.. |.+
T Consensus 60 ~aDVVvLAVP~~--a~~~v~~~l~~~~~-~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~~lp~a-kVVkA-Fn~i 134 (211)
T COG2085 60 LADVVVLAVPFE--AIPDVLAELRDALG-GKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAKLLPGA-KVVKA-FNTI 134 (211)
T ss_pred cCCEEEEeccHH--HHHhHHHHHHHHhC-CeEEEecCCCccccCCccccccCCCCCcHHHHHHHHCCCc-chhhh-hccc
Confidence 999999999843 45577788877766 67776654431 122 233444433 34332 211
Q ss_pred C-------CCC-CCeEEEEeCCCCCHHHHHHHHHHHHHhCCceEEec
Q 008509 288 P-------AHV-MPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVG 326 (563)
Q Consensus 288 P-------~~~-~~lvEiv~~~~t~~~~~~~~~~l~~~lGk~~v~~~ 326 (563)
| ++. .+..-.+.+ -|.+..+.+.++.+.+|..++.++
T Consensus 135 ~a~~l~~~~~~~~~~~v~vag--DD~~Ak~~v~~L~~~iG~~~ld~G 179 (211)
T COG2085 135 PAAVLADLAKPGGRRDVLVAG--DDAEAKAVVAELAEDIGFRPLDAG 179 (211)
T ss_pred CHHHhccCCCcCCceeEEEec--CcHHHHHHHHHHHHhcCcceeecc
Confidence 1 111 233334455 478899999999999999999985
No 177
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=98.85 E-value=1.7e-08 Score=88.27 Aligned_cols=115 Identities=16% Similarity=0.151 Sum_probs=73.0
Q ss_pred ceeEEEEcCCcchHHHHHHHHhCCCeEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCccccc
Q 008509 147 VRKVAVIGGGLMGSGIATAHILNNIYVVLK-EVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 225 (563)
Q Consensus 147 ~~kv~ViGaG~mG~~iA~~la~~G~~V~l~-d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 225 (563)
-.||+|||+|.+|..++..|.++|++|..+ .+++++.+++... +......+..+.+.
T Consensus 10 ~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~----------------------~~~~~~~~~~~~~~ 67 (127)
T PF10727_consen 10 RLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAF----------------------IGAGAILDLEEILR 67 (127)
T ss_dssp --EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC------------------------TT-----TTGGGC
T ss_pred ccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccccccc----------------------cccccccccccccc
Confidence 368999999999999999999999998754 7877666654311 01112222236689
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHhh--CCCCeEEEecCCCCCHHHHhhhccCCCceeeccc
Q 008509 226 DVDMVIEAVIESVPLKQKIFSELEKA--CPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHF 285 (563)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~~~l~~~--~~~~~ii~sntS~l~i~~la~~~~~~~r~ig~hf 285 (563)
++|+||.+||++. ..++.++|... ..++++|+-++-+++++-|.....+.-....+||
T Consensus 68 ~aDlv~iavpDda--I~~va~~La~~~~~~~g~iVvHtSGa~~~~vL~p~~~~Ga~~~s~HP 127 (127)
T PF10727_consen 68 DADLVFIAVPDDA--IAEVAEQLAQYGAWRPGQIVVHTSGALGSDVLAPARERGAIVASLHP 127 (127)
T ss_dssp C-SEEEE-S-CCH--HHHHHHHHHCC--S-TT-EEEES-SS--GGGGHHHHHTT-EEEEEEE
T ss_pred cCCEEEEEechHH--HHHHHHHHHHhccCCCCcEEEECCCCChHHhhhhHHHCCCeEEEeCc
Confidence 9999999999883 56888898887 7789988765555677666665555555666664
No 178
>PRK06190 enoyl-CoA hydratase; Provisional
Probab=98.81 E-value=1.5e-08 Score=100.64 Aligned_cols=93 Identities=20% Similarity=0.203 Sum_probs=81.5
Q ss_pred CccCCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCccchhccccCCCCChHHHHHHHHHHHHHHHhhCCCC
Q 008509 1 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM 80 (563)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (563)
|++||++++|+||+++||||+++|++++++.|.+++++++..+ +
T Consensus 158 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~------------------------------------~ 201 (258)
T PRK06190 158 MSLTGDFLDAADALRAGLVTEVVPHDELLPRARRLAASIAGNN------------------------------------P 201 (258)
T ss_pred HHHhCCccCHHHHHHcCCCeEecCHhHHHHHHHHHHHHHHcCC------------------------------------H
Confidence 5789999999999999999999999999999999999998743 3
Q ss_pred hhHHHHHHHHHHhhccCchhhHHHHHHHHHHHhcC---HHHHHHHHHHhhhh
Q 008509 81 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVML---DTSRGLVHVFFAQR 129 (563)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s---~~~~~~~~aF~~kr 129 (563)
.+...+|++++.....+++++++.|...+..++.| +...+....|.++-
T Consensus 202 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~~~~~~~~~~~~~~~~~ 253 (258)
T PRK06190 202 AAVRALKASYDDGAAAQTGDALALEAEAARAHNRSVSPDGIAARREAVMARG 253 (258)
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhh
Confidence 58889999999888888999999999999999998 66677667776643
No 179
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=98.79 E-value=6.2e-08 Score=99.61 Aligned_cols=164 Identities=17% Similarity=0.070 Sum_probs=101.3
Q ss_pred eEEEEcCCcchHHHHHHHHhCC--------CeEEEEeC-----CHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHhhhcC
Q 008509 149 KVAVIGGGLMGSGIATAHILNN--------IYVVLKEV-----NSEYLLKGIKTIEANVRGLVTRGK-LTQDKANNALKM 214 (563)
Q Consensus 149 kv~ViGaG~mG~~iA~~la~~G--------~~V~l~d~-----~~~~~~~~~~~i~~~~~~~~~~g~-~~~~~~~~~~~~ 214 (563)
||+|||+|.||+++|..++.+| ++|++|.+ +++..+.. +.. .+... +.. -....+
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~i----n~~----~~n~~ylpg---i~Lp~~ 69 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEII----NTT----HENVKYLPG---IKLPAN 69 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHH----Hhc----CCCccccCC---CcCCCC
Confidence 6899999999999999999999 99999999 33332221 111 11000 100 012346
Q ss_pred eeeecCcc-cccCCCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHH--------HH-hhhccCCCceeecc
Q 008509 215 LKGVLDYS-EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--------IV-GEKTSSQDRIIGAH 284 (563)
Q Consensus 215 i~~~~~~~-~l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS~l~i~--------~l-a~~~~~~~r~ig~h 284 (563)
+..++|++ ++++||+||.+||.+ .-++++.++.++++++.+++|.+-++..+ ++ .+.+.. ++.
T Consensus 70 i~at~dl~eal~~ADiIIlAVPs~--~i~~vl~~l~~~l~~~~~iVs~tKGie~~~~~~~~~se~i~e~l~~--~~~--- 142 (342)
T TIGR03376 70 LVAVPDLVEAAKGADILVFVIPHQ--FLEGICKQLKGHVKPNARAISCIKGLEVSKDGVKLLSDIIEEELGI--PCG--- 142 (342)
T ss_pred eEEECCHHHHHhcCCEEEEECChH--HHHHHHHHHHhhcCCCCEEEEEeCCcccCCCcCccHHHHHHHHhCC--CeE---
Confidence 77888884 679999999999965 46788999999999888888876665443 22 222321 111
Q ss_pred cCCCCC-------CCCeEEEEeCCCCC--HHHHHHHHHHHHHhCCceEEecCcch
Q 008509 285 FFSPAH-------VMPLLEIVRTERTS--AQVILDLMTVGKIIKKVPVVVGNCTG 330 (563)
Q Consensus 285 f~~P~~-------~~~lvEiv~~~~t~--~~~~~~~~~l~~~lGk~~v~~~d~~G 330 (563)
....|+ ..|..-++.+...+ .+....+++++..--.++....|..|
T Consensus 143 ~lsGP~~A~Eva~~~pt~~~ia~~~~~~~~~~a~~~~~lf~~~~frv~~s~Dv~G 197 (342)
T TIGR03376 143 VLSGANLANEVAKEKFSETTVGYRDPADFDVDARVLKALFHRPYFRVNVVDDVAG 197 (342)
T ss_pred EeeCcchHHHHHcCCCceEEEEeCCCcchHHHHHHHHHHhCCCCEEEEEcCCccc
Confidence 112221 22333344443222 67777777777654444444456554
No 180
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=98.78 E-value=1.4e-08 Score=103.18 Aligned_cols=98 Identities=17% Similarity=0.267 Sum_probs=68.2
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCcccccC
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 226 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 226 (563)
+||+|||+|.||+++|..++..|+ +|+++|++++. .++.. ...++ .+. ......+++.++|++++++
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l-~~g~a--~d~~~----~~~-----~~~~~~~i~~t~d~~~~~~ 69 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGI-PQGKA--LDMYE----ASP-----VGGFDTKVTGTNNYADTAN 69 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCCh-hHHHH--Hhhhh----hhh-----ccCCCcEEEecCCHHHhCC
Confidence 489999999999999999999887 89999997664 33221 11111 110 0111246878889988999
Q ss_pred CCEEEEecC--------------CChHHHHHHHHHHHhhCCCCeEE
Q 008509 227 VDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCIL 258 (563)
Q Consensus 227 aDlVieav~--------------e~~~~k~~v~~~l~~~~~~~~ii 258 (563)
||+||.++. .|..+-+++.+++.++.+ ++++
T Consensus 70 aDiVIitag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p-~~~i 114 (305)
T TIGR01763 70 SDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSP-NPII 114 (305)
T ss_pred CCEEEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCC-CeEE
Confidence 999999987 244555666777888764 4444
No 181
>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=98.75 E-value=8.8e-09 Score=107.69 Aligned_cols=128 Identities=14% Similarity=0.114 Sum_probs=80.1
Q ss_pred CccCCCCCCHHHHHhCCCcceecCCchHHHHHHHHHH----------hhhcc-CCccchh-------ccc-cCCCC--Ch
Q 008509 1 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWAL----------DIAAR-RKPWIRS-------LHR-TDKLG--SL 59 (563)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~----------~~~~~-~~p~~~~-------~~~-~~~~~--~~ 59 (563)
|+|||++++|++|+++||||+|||++++.+.+.++++ .+.+. ..++... ... ..-++ +.
T Consensus 168 l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~ 247 (379)
T PLN02874 168 LALTGARLNGKEMVACGLATHFVPSEKLPELEKRLLNLNSGDESAVQEAIEEFSKDVQADEDSILNKQSWINECFSKDTV 247 (379)
T ss_pred HHHcCCcccHHHHHHcCCccEEeCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHhCCCCH
Confidence 5789999999999999999999999888763333211 11100 0000000 000 00000 00
Q ss_pred HHHHHHHH---------HHHHHHH-hhCCCChhHHHHHHHHHHhhccCchhhHHHHHHHHHHHhc---CHHHHHHHHHHh
Q 008509 60 SEAREVLK---------LARLQAK-KTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVM---LDTSRGLVHVFF 126 (563)
Q Consensus 60 ~~~~~~~~---------~~~~~~~-~~~~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~---s~~~~~~~~aF~ 126 (563)
.+....+. -+....+ -..+.+.++..+|++++.+...+++++++.|......++. ++|+++++++|+
T Consensus 248 ~eii~al~~~~~~~~~~~A~~~a~~l~~~sP~al~~tk~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~~D~~EGv~Afl 327 (379)
T PLN02874 248 EEIIKAFESEASKTGNEWIKETLKGLRRSSPTGLKITLRSIREGRKQSLAECLKKEFRLTMNILRSTVSDDVYEGIRALV 327 (379)
T ss_pred HHHHHHHhhcccccccHHHHHHHHHHHhcChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCcCcchhhccceEE
Confidence 00001110 0122222 2334567899999999998888999999999888888877 999999999997
Q ss_pred -hh
Q 008509 127 -AQ 128 (563)
Q Consensus 127 -~k 128 (563)
+|
T Consensus 328 idK 330 (379)
T PLN02874 328 IDK 330 (379)
T ss_pred EcC
Confidence 77
No 182
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=98.75 E-value=2.2e-08 Score=99.97 Aligned_cols=118 Identities=27% Similarity=0.378 Sum_probs=84.4
Q ss_pred EEEEcC-CcchHHHHHHHHhCC----CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecC-ccc
Q 008509 150 VAVIGG-GLMGSGIATAHILNN----IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD-YSE 223 (563)
Q Consensus 150 v~ViGa-G~mG~~iA~~la~~G----~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~-~~~ 223 (563)
|+|||+ |.||.++|..++..| .+|+++|+++++++.....+++..... ...++..++| +++
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~-------------~~~~i~~~~d~~~~ 67 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPL-------------ADIKVSITDDPYEA 67 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhc-------------cCcEEEECCchHHH
Confidence 689999 999999999999999 799999999988776544433332110 1135677777 589
Q ss_pred ccCCCEEEE--------------ecCCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhhhc----c-CCCceeec
Q 008509 224 FKDVDMVIE--------------AVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKT----S-SQDRIIGA 283 (563)
Q Consensus 224 l~~aDlVie--------------av~e~~~~k~~v~~~l~~~~~~~~ii~sntS~l~i~~la~~~----~-~~~r~ig~ 283 (563)
+++||+||+ .+.++..+++++.+++++++ +++++..- +.|.+.+...+ . .+.|++|+
T Consensus 68 ~~~aDiVv~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~-p~a~~i~~--tNP~d~~t~~~~~~sg~~~~kviG~ 143 (263)
T cd00650 68 FKDADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYS-PDAWIIVV--SNPVDIITYLVWRYSGLPKEKVIGL 143 (263)
T ss_pred hCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEe--cCcHHHHHHHHHHHhCCCchhEEEe
Confidence 999999999 66778889999999999999 55554433 24555444332 1 23555554
No 183
>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]
Probab=98.74 E-value=3e-08 Score=98.64 Aligned_cols=92 Identities=27% Similarity=0.318 Sum_probs=81.7
Q ss_pred CccCCCCCCHHHHHhCCCcceecCC-chHHHHHHHHHHhhhccCCccchhccccCCCCChHHHHHHHHHHHHHHHhhCCC
Q 008509 1 MMLLSKSITSEEGWKLGLIDAVVTS-EELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 79 (563)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~-~~l~~~A~~~a~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (563)
|++||++++|+||+++||||+++++ ++|++.+.+++++++. +
T Consensus 162 l~ltg~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~a~-~------------------------------------ 204 (257)
T COG1024 162 LLLTGEPISAAEALELGLVDEVVPDAEELLERALELARRLAA-P------------------------------------ 204 (257)
T ss_pred HHHcCCcCCHHHHHHcCCcCeeeCCHHHHHHHHHHHHHHHcc-C------------------------------------
Confidence 5799999999999999999999985 6999999999999875 1
Q ss_pred ChhHHHHHHHHHHhhccCchhhHHHHHHHHHHHhcCHHHHHHHHHHhhhhh
Q 008509 80 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRA 130 (563)
Q Consensus 80 ~~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~~kr~ 130 (563)
+.+...+|+.++.+...++++.+..|...+...+.++++++++.+|.+ |+
T Consensus 205 ~~a~~~~k~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~eg~~a~~~-r~ 254 (257)
T COG1024 205 PLALAATKRLVRAALEADLAEALEAEALAFARLFSSEDFREGVRAFLE-RK 254 (257)
T ss_pred HHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHhcChhHHHHHHHHHc-cC
Confidence 247788899988887767899999999999998999999999999999 54
No 184
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.73 E-value=1.4e-07 Score=97.40 Aligned_cols=103 Identities=17% Similarity=0.149 Sum_probs=73.0
Q ss_pred eEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCC--CCHHHHHhhhcCeeeecCcc-cc-
Q 008509 149 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGK--LTQDKANNALKMLKGVLDYS-EF- 224 (563)
Q Consensus 149 kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~--~~~~~~~~~~~~i~~~~~~~-~l- 224 (563)
||+|||+|.||+.+|..|+++|++|++|+++++.++...+. ..+. +.. ......+..+++++ .+
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~---------~~~~~~~~~---~~~~~~i~~~~~~~~~~~ 69 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTK---------RKNLKYLPT---CHLPDNISVKSAIDEVLS 69 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHc---------CCCcccCCC---CcCCCCeEEeCCHHHHHh
Confidence 69999999999999999999999999999998876653311 0010 100 01112455666664 44
Q ss_pred cCCCEEEEecCCChHHHHHHHHHHHh-hCCCCeEEEecCCCC
Q 008509 225 KDVDMVIEAVIESVPLKQKIFSELEK-ACPPHCILATNTSTI 265 (563)
Q Consensus 225 ~~aDlVieav~e~~~~k~~v~~~l~~-~~~~~~ii~sntS~l 265 (563)
.++|+||.|||.. .-.++++++.+ .+++++.+++.+.++
T Consensus 70 ~~~Dliiiavks~--~~~~~l~~l~~~~l~~~~~vv~~~nGi 109 (326)
T PRK14620 70 DNATCIILAVPTQ--QLRTICQQLQDCHLKKNTPILICSKGI 109 (326)
T ss_pred CCCCEEEEEeCHH--HHHHHHHHHHHhcCCCCCEEEEEEcCe
Confidence 5899999999865 35678888887 888887666556655
No 185
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.69 E-value=1.1e-07 Score=98.59 Aligned_cols=169 Identities=18% Similarity=0.035 Sum_probs=102.8
Q ss_pred ceeEEEEcCCcchHHHHHHHHhCC-------CeEEEEeCCHHH-HHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeee
Q 008509 147 VRKVAVIGGGLMGSGIATAHILNN-------IYVVLKEVNSEY-LLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV 218 (563)
Q Consensus 147 ~~kv~ViGaG~mG~~iA~~la~~G-------~~V~l~d~~~~~-~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~ 218 (563)
.+||+|||+|.||++||..++.+| ++|.+|.++++. -+...+.++.. ......+.. -....++..+
T Consensus 11 ~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~---~~N~~ylp~---~~Lp~ni~~t 84 (365)
T PTZ00345 11 PLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTK---HENVKYLPG---IKLPDNIVAV 84 (365)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhc---CCCcccCCC---CcCCCceEEe
Confidence 368999999999999999999998 899999999862 00111111110 000011111 1233578888
Q ss_pred cCc-ccccCCCEEEEecCCChHHHHHHHHHHHh--hCCCCeEEEecCCCCC--------HHHHh-hhccCCCceeecccC
Q 008509 219 LDY-SEFKDVDMVIEAVIESVPLKQKIFSELEK--ACPPHCILATNTSTID--------LNIVG-EKTSSQDRIIGAHFF 286 (563)
Q Consensus 219 ~~~-~~l~~aDlVieav~e~~~~k~~v~~~l~~--~~~~~~ii~sntS~l~--------i~~la-~~~~~~~r~ig~hf~ 286 (563)
+|+ +++++||+||.+||.+ .-+++++++.+ .++++++++|.+-++. ++++. +.+.. ++. .+
T Consensus 85 sdl~eav~~aDiIvlAVPsq--~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~~t~~~~~~sevi~e~l~~--~~~---~L 157 (365)
T PTZ00345 85 SDLKEAVEDADLLIFVIPHQ--FLESVLSQIKENNNLKKHARAISLTKGIIVENGKPVLCSDVIEEELGI--PCC---AL 157 (365)
T ss_pred cCHHHHHhcCCEEEEEcChH--HHHHHHHHhccccccCCCCEEEEEeCCcccCCCCcccHHHHHHHHhCC--CeE---EE
Confidence 888 4789999999999965 46788999988 7777777777655543 33332 23322 221 11
Q ss_pred CCC-------CCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCceEEecCcch
Q 008509 287 SPA-------HVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG 330 (563)
Q Consensus 287 ~P~-------~~~~lvEiv~~~~t~~~~~~~~~~l~~~lGk~~v~~~d~~G 330 (563)
..| ...|..-++.+ .+.+....+++++..--.++....|..|
T Consensus 158 sGPs~A~Eva~~~pt~~vias--~~~~~a~~~~~lf~~~~frvy~s~Dv~G 206 (365)
T PTZ00345 158 SGANVANDVAREEFSEATIGC--EDKDDALIWQRLFDRPYFKINCVPDVIG 206 (365)
T ss_pred ECCCHHHHHHcCCCcEEEEEe--CCHHHHHHHHHHhCCCcEEEEEcCCccc
Confidence 222 12233333333 3677777777777654455555566554
No 186
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=98.66 E-value=6.6e-07 Score=91.22 Aligned_cols=112 Identities=18% Similarity=0.117 Sum_probs=76.9
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCcccccCC
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 227 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 227 (563)
+||+|||+|.||+.+|..|+++|++|++++++++.++... +.|. .-.+ ......+..+++.+.+.++
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~-----------~~g~-~~~~-~~~~~~~~~~~~~~~~~~~ 67 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALN-----------ENGL-RLED-GEITVPVLAADDPAELGPQ 67 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHH-----------HcCC-cccC-CceeecccCCCChhHcCCC
Confidence 3799999999999999999999999999999887765532 1121 0000 0000112234445555899
Q ss_pred CEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCCCCC-HHHHhhhc
Q 008509 228 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID-LNIVGEKT 274 (563)
Q Consensus 228 DlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS~l~-i~~la~~~ 274 (563)
|+||.|++... ...+++++.+.+.++++|++...++. .+.+...+
T Consensus 68 d~vila~k~~~--~~~~~~~l~~~l~~~~~iv~~~nG~~~~~~l~~~~ 113 (304)
T PRK06522 68 DLVILAVKAYQ--LPAALPSLAPLLGPDTPVLFLQNGVGHLEELAAYI 113 (304)
T ss_pred CEEEEeccccc--HHHHHHHHhhhcCCCCEEEEecCCCCcHHHHHHhc
Confidence 99999998653 36788899998888887777666665 34455444
No 187
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=98.65 E-value=4.7e-07 Score=92.40 Aligned_cols=167 Identities=15% Similarity=0.106 Sum_probs=96.1
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHhhhcCeeeecCcc-ccc
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGK-LTQDKANNALKMLKGVLDYS-EFK 225 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~-~~~~~~~~~~~~i~~~~~~~-~l~ 225 (563)
+||+|||+|.||..+|..|+++|++|+++++ ++.++... +.|. +.....+. ......+++.+ ...
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~-----------~~g~~~~~~~~~~-~~~~~~~~~~~~~~~ 67 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALR-----------ERGLVIRSDHGDA-VVPGPVITDPEELTG 67 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHH-----------hCCeEEEeCCCeE-EecceeecCHHHccC
Confidence 4799999999999999999999999999999 66655432 1111 00000000 00112234444 348
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCCCCC-HHHHhhhccCCCcee-ecccC-----CCCCC----CCe
Q 008509 226 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID-LNIVGEKTSSQDRII-GAHFF-----SPAHV----MPL 294 (563)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS~l~-i~~la~~~~~~~r~i-g~hf~-----~P~~~----~~l 294 (563)
++|+||.|++... -.+++.++.+.+.++++|++..-++. .+.+...++. .+++ |..++ .|-.. ...
T Consensus 68 ~~d~vilavk~~~--~~~~~~~l~~~~~~~~~ii~~~nG~~~~~~l~~~~~~-~~v~~g~~~~~~~~~~~g~v~~~~~~~ 144 (305)
T PRK12921 68 PFDLVILAVKAYQ--LDAAIPDLKPLVGEDTVIIPLQNGIGQLEQLEPYFGR-ERVLGGVVFISAQLNGDGVVVQRADHR 144 (305)
T ss_pred CCCEEEEEecccC--HHHHHHHHHhhcCCCCEEEEeeCCCChHHHHHHhCCc-ccEEEEEEEEEEEECCCeEEEEcCCCc
Confidence 9999999998653 35677888888888887776555665 3445544432 2433 23332 22110 011
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHHhCCceEEecCcch
Q 008509 295 LEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG 330 (563)
Q Consensus 295 vEiv~~~~t~~~~~~~~~~l~~~lGk~~v~~~d~~G 330 (563)
+.+-..+....+..+.+..++...|.......|...
T Consensus 145 ~~iG~~~~~~~~~~~~l~~~l~~~g~~~~~~~di~~ 180 (305)
T PRK12921 145 LTFGEIPGQRSERTRAVRDALAGARLEVVLSENIRQ 180 (305)
T ss_pred EEEcCCCCCcCHHHHHHHHHHHhCCCCceecHHHHH
Confidence 112111222345566666777777765555555433
No 188
>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]
Probab=98.63 E-value=2.4e-08 Score=91.92 Aligned_cols=91 Identities=20% Similarity=0.330 Sum_probs=65.7
Q ss_pred ccCCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCccchhccccCCCCChHHHHHHHHHHHHHHHhhCCCCh
Q 008509 2 MLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMP 81 (563)
Q Consensus 2 iltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (563)
.+.+|.++|+||++|||||.|||-++|++++.+||+++.+++ | .
T Consensus 181 wfLcR~Y~A~eal~MGlVN~Vvp~~~LE~e~v~W~~E~l~kS-P-----------------------------------~ 224 (282)
T COG0447 181 WFLCRQYDAEEALDMGLVNTVVPHADLEKETVQWAREMLAKS-P-----------------------------------T 224 (282)
T ss_pred hhhhhhccHHHHHhcCceeeeccHHHHHHHHHHHHHHHHhcC-h-----------------------------------H
Confidence 457899999999999999999999999999999999988854 2 2
Q ss_pred hHHHHHHHHHHhhccCchhhHHHHHHHH----HHHhcCHHHHHHHHHHhhhhhhcc
Q 008509 82 QHQACLDVIEEGIVHGGYSGVLKEAKVF----KELVMLDTSRGLVHVFFAQRATSK 133 (563)
Q Consensus 82 A~~~~~~~i~~~~~~~~~~~l~~E~~~f----~~l~~s~~~~~~~~aF~~kr~~~k 133 (563)
|. ++++.+.+.+- +++.=-.++- .-..+|+|++|++.+|.+||++..
T Consensus 225 Al----R~LK~Afnad~-DGlaG~q~~ag~at~L~YmTdEa~EGr~AF~eKR~Pdf 275 (282)
T COG0447 225 AL----RMLKAAFNADC-DGLAGLQELAGNATLLYYMTDEAQEGRDAFLEKRKPDF 275 (282)
T ss_pred HH----HHHHHHhcCCC-chhhHHHHhcccceEEEEechhhhhhHHHHhhccCCCh
Confidence 33 34444444332 2222211111 123579999999999999998643
No 189
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=98.62 E-value=8e-07 Score=91.08 Aligned_cols=175 Identities=8% Similarity=0.075 Sum_probs=102.0
Q ss_pred cceeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHhhhcCeeeecCcccc
Q 008509 146 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGK-LTQDKANNALKMLKGVLDYSEF 224 (563)
Q Consensus 146 ~~~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~-~~~~~~~~~~~~i~~~~~~~~l 224 (563)
+.++|+|||+|.||+.+|..|+++|++|+++.+++. +... +.|. +....-+.....+...++.+.+
T Consensus 4 ~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~--~~~~-----------~~g~~~~~~~~~~~~~~~~~~~~~~~~ 70 (313)
T PRK06249 4 ETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDY--EAVR-----------ENGLQVDSVHGDFHLPPVQAYRSAEDM 70 (313)
T ss_pred cCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCH--HHHH-----------hCCeEEEeCCCCeeecCceEEcchhhc
Confidence 346899999999999999999999999999999863 2111 1121 0000000000112234444567
Q ss_pred cCCCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHH-HHhhhccCCCceeec-cc-----CCCCC---C-CC
Q 008509 225 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN-IVGEKTSSQDRIIGA-HF-----FSPAH---V-MP 293 (563)
Q Consensus 225 ~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS~l~i~-~la~~~~~~~r~ig~-hf-----~~P~~---~-~~ 293 (563)
..+|+||.|++... + .+++..+.+.+.+++++++-.-++... .+...++ +.++++. .+ ..|.. . ..
T Consensus 71 ~~~D~vilavK~~~-~-~~~~~~l~~~~~~~~~iv~lqNG~~~~e~l~~~~~-~~~v~~g~~~~~a~~~~pg~v~~~~~g 147 (313)
T PRK06249 71 PPCDWVLVGLKTTA-N-ALLAPLIPQVAAPDAKVLLLQNGLGVEEQLREILP-AEHLLGGLCFICSNRVGPGVIHHLAYG 147 (313)
T ss_pred CCCCEEEEEecCCC-h-HhHHHHHhhhcCCCCEEEEecCCCCcHHHHHHHCC-CCcEEEEeeeEeEecCCCeEEEECCCC
Confidence 88999999998653 2 467888888898888777766677654 4554443 2344432 22 22220 0 01
Q ss_pred eEEEEeCCCCC-----HHHHHHHHHHHHHhCCceEEecCcchhhhHHH
Q 008509 294 LLEIVRTERTS-----AQVILDLMTVGKIIKKVPVVVGNCTGFAVNRA 336 (563)
Q Consensus 294 lvEiv~~~~t~-----~~~~~~~~~l~~~lGk~~v~~~d~~Gfi~nRl 336 (563)
-+.+......+ .+..+.+..+++..|..+....|....+...+
T Consensus 148 ~~~iG~~~~~~~~~~~~~~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl 195 (313)
T PRK06249 148 RVNLGYHSGPAADDGITARVEEGAALFRAAGIDSQAMPDLAQARWQKL 195 (313)
T ss_pred cEEEecCCCCcccchHHHHHHHHHHHHHhCCCCceeCchHHHHHHhHh
Confidence 11121111112 35556667777777776666666555444444
No 190
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=98.60 E-value=5.5e-07 Score=92.52 Aligned_cols=112 Identities=14% Similarity=0.030 Sum_probs=82.9
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCc-ccccC
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 226 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 226 (563)
++|+|||+|.||.++|..+...|++|++||++++..... +..+.++ +.+++
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~~----------------------------~~~~~~l~ell~~ 198 (330)
T PRK12480 147 MTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLDF----------------------------LTYKDSVKEAIKD 198 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhhh----------------------------hhccCCHHHHHhc
Confidence 479999999999999999999999999999987542110 1122344 46789
Q ss_pred CCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCCC--CCHHHHhhhccC-CCceeecccCC
Q 008509 227 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTSS-QDRIIGAHFFS 287 (563)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS~--l~i~~la~~~~~-~~r~ig~hf~~ 287 (563)
||+|+.++|...+.+..+.+++.+.++++++|++.+-+ +.-..+.+++.. +-...++--|.
T Consensus 199 aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~~g~i~gaalDV~~ 262 (330)
T PRK12480 199 ADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVNDGTLLGAAIDTYE 262 (330)
T ss_pred CCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHHcCCeeEEEEeccC
Confidence 99999999999988888888888899999988765544 344466666642 33344555554
No 191
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=98.59 E-value=1.9e-07 Score=95.42 Aligned_cols=86 Identities=13% Similarity=0.098 Sum_probs=77.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCcHhHHHHHh---CHHHHHHHHHHHHHHhCC-CCC
Q 008509 459 EKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAV---GANYVYTSLKKWSQLYGN-FFK 534 (563)
Q Consensus 459 ~~~i~~r~l~~~~~ea~~~l~~gv~~~~~diD~~~~~g~g~p~~~gGp~~~~d~~---G~~~~~~~~~~~~~~~~~-~~~ 534 (563)
+++++||++.++++||+.++++|++ |+++||.++..|+|+|...-|||.++|.. |++.+......++...++ ++.
T Consensus 186 ~G~i~nrl~~a~~~EA~~l~~~g~~-~~~~id~~~~~~~g~~~~~~gp~~~~d~~~~~g~~~~~~k~~~l~~~~~~~~~~ 264 (308)
T PRK06129 186 DGFVLNRLQGALLREAFRLVADGVA-SVDDIDAVIRDGLGLRWSFMGPFETIDLNAPGGVADYAQRYGPMYRRMAAERGQ 264 (308)
T ss_pred ccHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhccCCCccCcCHHHHHhccccccHHHHHHHHHHHHHhhccccCC
Confidence 5899999999999999999999999 99999999999999883334999999987 999999999999888776 888
Q ss_pred CCHHHHHHHHc
Q 008509 535 PSRFLEERATK 545 (563)
Q Consensus 535 p~~~l~~~~~~ 545 (563)
|+|++++++++
T Consensus 265 ~~~~~~~~~~~ 275 (308)
T PRK06129 265 PVPWDGELVAR 275 (308)
T ss_pred CchhhHHHHHH
Confidence 99999988863
No 192
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=98.57 E-value=4.7e-06 Score=78.71 Aligned_cols=182 Identities=14% Similarity=0.123 Sum_probs=122.1
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCc----cc
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY----SE 223 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~----~~ 223 (563)
++|++||+|.||..|+..|.+.||+|+.||+|+++++.+. ..|. +..+++ ..
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~-----------~~ga-------------~~a~sl~el~~~ 56 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELK-----------DEGA-------------TGAASLDELVAK 56 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHH-----------hcCC-------------ccccCHHHHHHh
Confidence 4689999999999999999999999999999999987753 2221 112222 34
Q ss_pred ccCCCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHH--hhhccCCCceeecccCCCCCC-------CCe
Q 008509 224 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIV--GEKTSSQDRIIGAHFFSPAHV-------MPL 294 (563)
Q Consensus 224 l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS~l~i~~l--a~~~~~~~r~ig~hf~~P~~~-------~~l 294 (563)
+...-.|-.+||-- ++..+++.++.+.+.++-+|+....+.--..+ +..+. -.|+||++--.. ...
T Consensus 57 L~~pr~vWlMvPag-~it~~vi~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~----~kgi~flD~GTSGG~~G~~~G~ 131 (300)
T COG1023 57 LSAPRIVWLMVPAG-DITDAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLA----EKGIHFLDVGTSGGVWGAERGY 131 (300)
T ss_pred cCCCcEEEEEccCC-CchHHHHHHHHhhcCCCCEEEECCccchHHHHHHHHHHH----hcCCeEEeccCCCCchhhhcCc
Confidence 55567888889864 35678999999999999988876544332222 22221 238899762211 112
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHHhCC---ceEEecC-cchhh----hHHHHHHH---HHHHHHHHHCC---CCHHHHHHH
Q 008509 295 LEIVRTERTSAQVILDLMTVGKIIKK---VPVVVGN-CTGFA----VNRAFFPY---SQSARLLVSLG---VDVFRIDSA 360 (563)
Q Consensus 295 vEiv~~~~t~~~~~~~~~~l~~~lGk---~~v~~~d-~~Gfi----~nRl~~~~---~~Ea~~l~~~G---~~~~~ID~a 360 (563)
+-+|.+ +.++++.+.++|+.+-- --.+++. ..|-+ -|-|-+.+ +.|.+.++++. ++.+++-++
T Consensus 132 ~lMiGG---~~~a~~~~~pif~~lA~ge~Gyl~~Gp~GsGHfvKMVHNGIEYGmM~a~aEGfelL~~s~fD~D~~~VA~v 208 (300)
T COG1023 132 CLMIGG---DEEAVERLEPIFKALAPGEDGYLYCGPSGSGHFVKMVHNGIEYGMMQAIAEGFELLKNSPFDYDLEAVAEV 208 (300)
T ss_pred eEEecC---cHHHHHHHHHHHHhhCcCcCccccccCCCcchhHHHHhccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHH
Confidence 224444 78999999999998754 3345543 34543 35553333 56888888874 377777777
Q ss_pred H
Q 008509 361 I 361 (563)
Q Consensus 361 ~ 361 (563)
+
T Consensus 209 W 209 (300)
T COG1023 209 W 209 (300)
T ss_pred H
Confidence 6
No 193
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=98.57 E-value=1.3e-07 Score=90.00 Aligned_cols=105 Identities=19% Similarity=0.265 Sum_probs=72.7
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCC-eEEEEeCC---HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCc--
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVN---SEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-- 221 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~-~V~l~d~~---~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-- 221 (563)
.+|+|+|+|.||+.+|..|++.|+ +|+++|.+ ++.+.+-.- .. ...|....+.....+.++.+..+.
T Consensus 22 ~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~-~~------~~iG~~Ka~~~~~~l~~inp~~~i~~ 94 (200)
T TIGR02354 22 ATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQY-KA------SQVGEPKTEALKENISEINPYTEIEA 94 (200)
T ss_pred CcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccC-Ch------hhCCCHHHHHHHHHHHHHCCCCEEEE
Confidence 579999999999999999999999 69999999 666554110 00 011222222223333332222111
Q ss_pred -----------ccccCCCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEe
Q 008509 222 -----------SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILAT 260 (563)
Q Consensus 222 -----------~~l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s 260 (563)
+.++++|+||+| .++.+.|..++.++....+...+++.
T Consensus 95 ~~~~i~~~~~~~~~~~~DlVi~a-~Dn~~~k~~l~~~~~~~~~~~~ii~~ 143 (200)
T TIGR02354 95 YDEKITEENIDKFFKDADIVCEA-FDNAEAKAMLVNAVLEKYKDKYLIAA 143 (200)
T ss_pred eeeeCCHhHHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 246889999999 79999999999999988887777763
No 194
>PRK06444 prephenate dehydrogenase; Provisional
Probab=98.56 E-value=9.3e-07 Score=83.57 Aligned_cols=113 Identities=12% Similarity=0.038 Sum_probs=79.9
Q ss_pred eeEEEEcC-CcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCcccccC
Q 008509 148 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 226 (563)
Q Consensus 148 ~kv~ViGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 226 (563)
++|+|||+ |.||.-++..|.++|+.|+ +.+
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v~-------------------------------------------------~~~ 31 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNGLGVY-------------------------------------------------IKK 31 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCCCEEE-------------------------------------------------ECC
Confidence 37999999 9999999999999999986 147
Q ss_pred CCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhhhccCCCceeecccCCCCCCC-----CeEEEEeCC
Q 008509 227 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVM-----PLLEIVRTE 301 (563)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS~l~i~~la~~~~~~~r~ig~hf~~P~~~~-----~lvEiv~~~ 301 (563)
||+||.|+|.+. -.++++++. .+|++.+|.-. .+.+. ..+|+|.||+..|... ..+-+ ..+
T Consensus 32 ~DlVilavPv~~--~~~~i~~~~------~~v~Dv~SvK~--~i~~~---~~~~vg~HPMfGp~~a~~~lf~~~iv-~~~ 97 (197)
T PRK06444 32 ADHAFLSVPIDA--ALNYIESYD------NNFVEISSVKW--PFKKY---SGKIVSIHPLFGPMSYNDGVHRTVIF-IND 97 (197)
T ss_pred CCEEEEeCCHHH--HHHHHHHhC------CeEEeccccCH--HHHHh---cCCEEecCCCCCCCcCcccccceEEE-ECC
Confidence 899999999663 335555543 35767776543 22222 3479999998754321 22323 456
Q ss_pred CCCHHHHHHHHHHHHHhCCceEEe
Q 008509 302 RTSAQVILDLMTVGKIIKKVPVVV 325 (563)
Q Consensus 302 ~t~~~~~~~~~~l~~~lGk~~v~~ 325 (563)
.++++.++.+.++++ |..++.+
T Consensus 98 ~~~~~~~~~~~~l~~--G~~~~~~ 119 (197)
T PRK06444 98 ISRDNYLNEINEMFR--GYHFVEM 119 (197)
T ss_pred CCCHHHHHHHHHHHc--CCEEEEe
Confidence 778888888888887 7666665
No 195
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=98.55 E-value=5.3e-06 Score=83.76 Aligned_cols=191 Identities=13% Similarity=0.069 Sum_probs=127.6
Q ss_pred ceeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCcc----
Q 008509 147 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS---- 222 (563)
Q Consensus 147 ~~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~---- 222 (563)
...|+|||+|.||+.+|..++++|+.|.+|+|+.++.+...+. ++. ..+|.++.+++
T Consensus 3 ~~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~----------~~~---------~k~i~~~~sieefV~ 63 (473)
T COG0362 3 KADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAE----------RAK---------GKNIVPAYSIEEFVA 63 (473)
T ss_pred ccceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHHh----------Ccc---------CCCccccCcHHHHHH
Confidence 3579999999999999999999999999999999998875431 110 01344444443
Q ss_pred cccCCCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHH---HhhhccCCCceeecccC-------CCCCCC
Q 008509 223 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNI---VGEKTSSQDRIIGAHFF-------SPAHVM 292 (563)
Q Consensus 223 ~l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS~l~i~~---la~~~~~~~r~ig~hf~-------~P~~~~ 292 (563)
.++.---|+.+|..- .....++.+|.+++.++-|+.+..-+.-.+. ..+.....-.|+|+-.- +.|+.|
T Consensus 64 ~Le~PRkI~lMVkAG-~~VD~~I~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEeGA~~GPSiM 142 (473)
T COG0362 64 SLEKPRKILLMVKAG-TPVDAVIEQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEEGARHGPSIM 142 (473)
T ss_pred HhcCCceEEEEEecC-CcHHHHHHHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEeccccccccccccCCCcC
Confidence 345566677777543 2235788999999999999987554433222 22222344567777653 233333
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHhC-----Cc-eEEe-cCcchhhh----HHHH---HHHHHHHHHHHHCC--CCHHH
Q 008509 293 PLLEIVRTERTSAQVILDLMTVGKIIK-----KV-PVVV-GNCTGFAV----NRAF---FPYSQSARLLVSLG--VDVFR 356 (563)
Q Consensus 293 ~lvEiv~~~~t~~~~~~~~~~l~~~lG-----k~-~v~~-~d~~Gfi~----nRl~---~~~~~Ea~~l~~~G--~~~~~ 356 (563)
+| .+++.-+.+.+++..+. .. ..++ .+..|.++ |-|- ..++.|+..++.++ ++.++
T Consensus 143 ------pG--G~~eay~~v~pil~~IaAk~~g~pCc~~iG~~GAGHfVKmVHNGIEYgDMQlIaE~Y~ilk~~lgls~~e 214 (473)
T COG0362 143 ------PG--GQKEAYELVAPILTKIAAKVDGEPCCTWIGPDGAGHFVKMVHNGIEYGDMQLIAEAYDILKDGLGLSAEE 214 (473)
T ss_pred ------CC--CCHHHHHHHHHHHHHHHhhcCCCCceeeECCCCCCceeeeeecCchHHHHHHHHHHHHHHHHhcCCCHHH
Confidence 44 57888888888887652 22 2234 35666544 4443 35688999999885 49999
Q ss_pred HHHHHHhcC
Q 008509 357 IDSAIRSFG 365 (563)
Q Consensus 357 ID~a~~~~G 365 (563)
|-.++..++
T Consensus 215 i~~vF~~WN 223 (473)
T COG0362 215 IAEVFEEWN 223 (473)
T ss_pred HHHHHHHhc
Confidence 999985544
No 196
>KOG1679 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=98.55 E-value=8.1e-08 Score=88.34 Aligned_cols=97 Identities=16% Similarity=0.181 Sum_probs=84.8
Q ss_pred CccCCCCCCHHHHHhCCCcceecCCc----hHHHHHHHHHHhhhccCCccchhccccCCCCChHHHHHHHHHHHHHHHhh
Q 008509 1 MMLLSKSITSEEGWKLGLIDAVVTSE----ELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKT 76 (563)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~----~l~~~A~~~a~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (563)
+|+||+.+++.||..+|||++||... .....|+++|+++.-.
T Consensus 188 LIftarvl~g~eA~~lGlVnhvv~qneegdaa~~kal~lA~eilp~---------------------------------- 233 (291)
T KOG1679|consen 188 LIFTARVLNGAEAAKLGLVNHVVEQNEEGDAAYQKALELAREILPQ---------------------------------- 233 (291)
T ss_pred HhhhheeccchhHHhcchHHHHHhcCccccHHHHHHHHHHHHhccC----------------------------------
Confidence 58999999999999999999999754 4566688888776542
Q ss_pred CCCChhHHHHHHHHHHhhccCchhhHHHHHHHHHHHhcCHHHHHHHHHHhhhhhhcc
Q 008509 77 APNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 133 (563)
Q Consensus 77 ~~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~~kr~~~k 133 (563)
.+.|+..+|-+|+.+...++..+|..|...+++...+.+.-+++.+|-+||++.-
T Consensus 234 --gPiavr~aKlAIn~G~evdiasgl~iEe~CYaq~i~t~drLeglaaf~ekr~p~y 288 (291)
T KOG1679|consen 234 --GPIAVRLAKLAINLGMEVDIASGLSIEEMCYAQIIPTKDRLEGLAAFKEKRKPEY 288 (291)
T ss_pred --CchhhhHHHHHhccCceecccccccHHHHHHHhcCcHHHHHHHHHHHHhhcCCCc
Confidence 2468999999999999999999999999999999999999999999999997643
No 197
>KOG1682 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=98.51 E-value=1.4e-07 Score=86.10 Aligned_cols=95 Identities=21% Similarity=0.215 Sum_probs=76.3
Q ss_pred CccCCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCccchhccccCCCCChHHHHHHHHHHHHHHHhhCCCC
Q 008509 1 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM 80 (563)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (563)
|++||.||+++||+.-|||.+|||+++|..++.+++..+...++
T Consensus 188 ML~Tg~Pi~~eeAl~sGlvskvVp~~el~~e~~~i~~~i~~~sr------------------------------------ 231 (287)
T KOG1682|consen 188 MLMTGLPITGEEALISGLVSKVVPAEELDKEIEEITNAIKAKSR------------------------------------ 231 (287)
T ss_pred HHHhCCCCchHHHHHhhhhhhcCCHHHHHHHHHHHHHHHhhhHH------------------------------------
Confidence 68999999999999999999999999999999999988766431
Q ss_pred hhHHHHHHHHHHhhccCchhhHHHHHHHHHHHhcCHHHHHHHHHHhhhhhh
Q 008509 81 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRAT 131 (563)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~~kr~~ 131 (563)
.....-|+-......++..+++....+-+.+-++-.|.++++.+||+||.+
T Consensus 232 av~slgk~f~y~q~~ms~~ea~~~~~~~m~~n~ql~d~kegiasf~~krp~ 282 (287)
T KOG1682|consen 232 AVISLGKEFYYKQLAMSQAEAFSAAQEKMCENFQLGDTKEGIASFFEKRPP 282 (287)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcccccchHHHHHHHhccCCC
Confidence 122234455555455666677777778888888899999999999999865
No 198
>PRK08290 enoyl-CoA hydratase; Provisional
Probab=98.49 E-value=2.1e-07 Score=94.02 Aligned_cols=81 Identities=16% Similarity=0.127 Sum_probs=71.0
Q ss_pred CccCCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCccchhccccCCCCChHHHHHHHHHHHHHHHhhCCCC
Q 008509 1 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM 80 (563)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (563)
|+|||++++|+||+++||||+|||+++|++.+.+++++++..+ +
T Consensus 180 llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~------------------------------------~ 223 (288)
T PRK08290 180 LLFTGDRLTADEAHRLGMVNRVVPRDELEAETLELARRIAAMP------------------------------------P 223 (288)
T ss_pred HHHcCCCCCHHHHHHCCCccEeeCHHHHHHHHHHHHHHHHhCC------------------------------------H
Confidence 5799999999999999999999999999999999999998753 2
Q ss_pred hhHHHHHHHHHHhhcc-CchhhHHHHHHHHHHHh-cCHH
Q 008509 81 PQHQACLDVIEEGIVH-GGYSGVLKEAKVFKELV-MLDT 117 (563)
Q Consensus 81 ~A~~~~~~~i~~~~~~-~~~~~l~~E~~~f~~l~-~s~~ 117 (563)
.+...+|+.++..... ++++++..|...+...+ ++++
T Consensus 224 ~a~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (288)
T PRK08290 224 FGLRLTKRAVNQTLDAQGFRAALDAVFDLHQLGHAHNAE 262 (288)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHccccchh
Confidence 5788899999887765 68999999998888877 6776
No 199
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=98.43 E-value=2.6e-06 Score=76.48 Aligned_cols=119 Identities=22% Similarity=0.301 Sum_probs=74.3
Q ss_pred eeEEEEcC-CcchHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCcccc
Q 008509 148 RKVAVIGG-GLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF 224 (563)
Q Consensus 148 ~kv~ViGa-G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l 224 (563)
+||+|||+ |..|+.+|..|...++ +++++|++++.++.-...+.+..... + ........+++++
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~---~----------~~~~i~~~~~~~~ 67 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPL---P----------SPVRITSGDYEAL 67 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGS---T----------EEEEEEESSGGGG
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhc---c----------ccccccccccccc
Confidence 48999999 9999999999999875 89999999886655333332221100 0 0112234678999
Q ss_pred cCCCEEEEecCC--------------ChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhhh----cc-CCCceee
Q 008509 225 KDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEK----TS-SQDRIIG 282 (563)
Q Consensus 225 ~~aDlVieav~e--------------~~~~k~~v~~~l~~~~~~~~ii~sntS~l~i~~la~~----~~-~~~r~ig 282 (563)
++||+||.+.-. +..+.+++..++.+.+ ++.+++..| -|++-++.. .. .|.|++|
T Consensus 68 ~~aDivvitag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~-p~~~vivvt--NPvd~~t~~~~~~s~~~~~kviG 141 (141)
T PF00056_consen 68 KDADIVVITAGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYA-PDAIVIVVT--NPVDVMTYVAQKYSGFPPNKVIG 141 (141)
T ss_dssp TTESEEEETTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHS-TTSEEEE-S--SSHHHHHHHHHHHHTSSGGGEEE
T ss_pred ccccEEEEeccccccccccHHHHHHHhHhHHHHHHHHHHHhC-CccEEEEeC--CcHHHHHHHHHHhhCcCcccCcC
Confidence 999999987622 2234445556778887 444444332 344433332 22 3455654
No 200
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=98.43 E-value=2.7e-05 Score=74.24 Aligned_cols=146 Identities=15% Similarity=0.122 Sum_probs=98.3
Q ss_pred hHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeee-ecCcccccCCCEEEEecCCC
Q 008509 159 GSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-VLDYSEFKDVDMVIEAVIES 237 (563)
Q Consensus 159 G~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~l~~aDlVieav~e~ 237 (563)
|+.+|..++.+||+|++.|.|.+-.+.. .+++.-..| +.. ++|.++++.+.+.|.-.|=-
T Consensus 33 Ga~mAiefAeAGHDVVLaePn~d~~dd~------~w~~vedAG-------------V~vv~dD~eaa~~~Ei~VLFTPFG 93 (340)
T COG4007 33 GARMAIEFAEAGHDVVLAEPNRDIMDDE------HWKRVEDAG-------------VEVVSDDAEAAEHGEIHVLFTPFG 93 (340)
T ss_pred chHHHHHHHHcCCcEEeecCCccccCHH------HHHHHHhcC-------------cEEecCchhhhhcceEEEEecccc
Confidence 8899999999999999999987765442 122222223 333 44568899999999888744
Q ss_pred hHHHHHHHHHHHhhCCCCeEEEecCCCCCHH----HHhhhccCCCceeecccCCCCC-----CCCeEEEEeCCCC-----
Q 008509 238 VPLKQKIFSELEKACPPHCILATNTSTIDLN----IVGEKTSSQDRIIGAHFFSPAH-----VMPLLEIVRTERT----- 303 (563)
Q Consensus 238 ~~~k~~v~~~l~~~~~~~~ii~sntS~l~i~----~la~~~~~~~r~ig~hf~~P~~-----~~~lvEiv~~~~t----- 303 (563)
. ..-.+.++|.++++++++|+ ||-+.|+- .+...++.+.+-+|...++|.- ..... ++.+..+
T Consensus 94 k-~T~~Iarei~~hvpEgAVic-nTCT~sp~vLy~~LE~~Lr~kR~dVGvssmHPAgvPGtp~h~~y-viagr~t~g~el 170 (340)
T COG4007 94 K-ATFGIAREILEHVPEGAVIC-NTCTVSPVVLYYSLEGELRTKREDVGVSSMHPAGVPGTPQHGHY-VIAGRSTEGKEL 170 (340)
T ss_pred h-hhHHHHHHHHhhCcCCcEec-ccccCchhHHHHHhhhhhcCchhhcCccccCCCCCCCCCCCceE-EEeccCCCceee
Confidence 2 22356788999999999886 33333333 3444556665667766666552 11222 3333332
Q ss_pred -CHHHHHHHHHHHHHhCCceEEec
Q 008509 304 -SAQVILDLMTVGKIIKKVPVVVG 326 (563)
Q Consensus 304 -~~~~~~~~~~l~~~lGk~~v~~~ 326 (563)
+++.++++.++++..||.+.++.
T Consensus 171 ATeEQi~r~velaes~Gk~~yv~p 194 (340)
T COG4007 171 ATEEQIERCVELAESTGKEVYVLP 194 (340)
T ss_pred ccHHHHHHHHHHHHhcCCceEecC
Confidence 57889999999999999999873
No 201
>PRK06213 enoyl-CoA hydratase; Provisional
Probab=98.40 E-value=2.5e-07 Score=90.42 Aligned_cols=73 Identities=22% Similarity=0.266 Sum_probs=64.3
Q ss_pred CccCCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCccchhccccCCCCChHHHHHHHHHHHHHHHhhCCCC
Q 008509 1 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM 80 (563)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (563)
|+++|++++|+||+++||||+|+|++++.+.+.+++++++..+ +
T Consensus 156 lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~------------------------------------~ 199 (229)
T PRK06213 156 AVINAEMFDPEEAVAAGFLDEVVPPEQLLARAQAAARELAGLN------------------------------------M 199 (229)
T ss_pred HHHcCcccCHHHHHHCCCceeccChHHHHHHHHHHHHHHhcCC------------------------------------H
Confidence 4789999999999999999999999999999999999998743 3
Q ss_pred hhHHHHHHHHHHhhccCchhhHHHHHHHH
Q 008509 81 PQHQACLDVIEEGIVHGGYSGVLKEAKVF 109 (563)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f 109 (563)
.+...+|+.++.....+++++++.|...|
T Consensus 200 ~a~~~~K~~l~~~~~~~l~~~~~~~~~~~ 228 (229)
T PRK06213 200 GAHAATKLKVRAAALEAIRAAIEGDAAEF 228 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHhchhhhhhhc
Confidence 57888999998887778888888888766
No 202
>KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=98.36 E-value=2.9e-07 Score=92.17 Aligned_cols=78 Identities=22% Similarity=0.214 Sum_probs=70.1
Q ss_pred cchhhhHHHHHHHHHHHHHHHHCCC--CHHHHHHHH-HhcCCCc---cHHHHhhhhchHHHHHHHHHHHHhCCCCCCchH
Q 008509 328 CTGFAVNRAFFPYSQSARLLVSLGV--DVFRIDSAI-RSFGLPI---GPFQLLDLAGYGVAAATSKEFDKAFPDRSFQSP 401 (563)
Q Consensus 328 ~~Gfi~nRl~~~~~~Ea~~l~~~G~--~~~~ID~a~-~~~G~p~---GPf~~~D~~Gld~~~~~~~~l~~~~~~~~~~~~ 401 (563)
.+..+++|++.+++||++++++||+ ++.++|-+. .|+|||. |||.|.|..|++.++..++.+.. +.|+.
T Consensus 292 ~~ed~v~~~~~p~VnEal~~l~EGi~~~~~~~Di~~v~G~gfp~~~GGp~~~~d~~G~~ki~~~l~~~~~-----f~P~~ 366 (380)
T KOG1683|consen 292 DDEDFVEFLLSPFVNEALRCLLEGLKASPSDGDIASVFGLGFPPFRGGPMRFVDLYGADKIVSRLQKWSS-----FEPCQ 366 (380)
T ss_pred CHHHHHHHHhhHHHHHHHHHHHHHHhcCccccceeeeeccCCCCcCCCceeeeeccChHHHHHHHHHHhc-----CCHHH
Confidence 3567999999999999999999997 999999999 9999996 99999999999999999988765 45888
Q ss_pred HHHHHHHcC
Q 008509 402 LVDLLLKSG 410 (563)
Q Consensus 402 ~l~~l~~~g 410 (563)
++..+..+|
T Consensus 367 ~l~~~a~~~ 375 (380)
T KOG1683|consen 367 LLKDHAKSG 375 (380)
T ss_pred HHHHHHhhh
Confidence 998888765
No 203
>PRK13243 glyoxylate reductase; Reviewed
Probab=98.36 E-value=3.3e-06 Score=87.05 Aligned_cols=114 Identities=16% Similarity=0.129 Sum_probs=79.6
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCc-ccccC
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 226 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 226 (563)
++|+|||.|.||..+|..+...|.+|..||+++..... ...+ .. ..++ +.+++
T Consensus 151 ktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~------------~~~~-------------~~-~~~l~ell~~ 204 (333)
T PRK13243 151 KTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPEAE------------KELG-------------AE-YRPLEELLRE 204 (333)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCChhhH------------HHcC-------------CE-ecCHHHHHhh
Confidence 68999999999999999999999999999997643210 0111 11 1234 46789
Q ss_pred CCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCCC--CCHHHHhhhccC-CCceeecccCC
Q 008509 227 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTSS-QDRIIGAHFFS 287 (563)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS~--l~i~~la~~~~~-~~r~ig~hf~~ 287 (563)
||+|+.++|-..+.+.-+-++..+.++++++++..+.+ +.-..+.+.+.. +-...++-.|.
T Consensus 205 aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~i~gAaLDV~~ 268 (333)
T PRK13243 205 SDFVSLHVPLTKETYHMINEERLKLMKPTAILVNTARGKVVDTKALVKALKEGWIAGAGLDVFE 268 (333)
T ss_pred CCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECcCchhcCHHHHHHHHHcCCeEEEEeccCC
Confidence 99999999998887777767788889999988654433 333456666542 22334444443
No 204
>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=98.35 E-value=8e-07 Score=93.05 Aligned_cols=88 Identities=18% Similarity=0.241 Sum_probs=73.0
Q ss_pred CccCCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCccchhccccCCCCChHHHHHHHHHHHHHHHhhCCCC
Q 008509 1 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM 80 (563)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (563)
|+|||++++|+||+++||||++||++++ +.+.+++.+++..+ +
T Consensus 196 L~LTG~~i~A~eA~~~GLv~~vVp~~~l-~~~~~~~~~i~~~~------------------------------------p 238 (401)
T PLN02157 196 LGLTGLKLSGAEMLACGLATHYIRSEEI-PVMEEQLKKLLTDD------------------------------------P 238 (401)
T ss_pred HHHcCCcCCHHHHHHcCCceEEeCHhHH-HHHHHHHHHHHcCC------------------------------------H
Confidence 5789999999999999999999999998 67778888876632 2
Q ss_pred hhHHHHHHHHHHhhccCchhhHHHHHHHHHHHhcCHHHHHHHHHHh
Q 008509 81 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFF 126 (563)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~ 126 (563)
.++..+|+.+... ..+...++..|...+..|+.+++.++.+.+|-
T Consensus 239 ~av~~~k~~~~~~-~~~~~~~l~~~~~~i~~~f~~~d~~ei~~al~ 283 (401)
T PLN02157 239 SVVESCLEKCAEV-AHPEKTGVIRRIDLLEKCFSHDTVEEIIDSLE 283 (401)
T ss_pred HHHHHHHHHHhcc-cCCcchhHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 4677788877655 24566788889999999999999999999993
No 205
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=98.35 E-value=1.7e-06 Score=88.31 Aligned_cols=98 Identities=23% Similarity=0.272 Sum_probs=66.5
Q ss_pred eeEEEEcCCcchHHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCccccc
Q 008509 148 RKVAVIGGGLMGSGIATAHILNN--IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 225 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 225 (563)
+||+|||+|.+|+++|..++..| ++|+++|++++.++.....+.+... ..+ ......+.++++++
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~---~~~----------~~~~i~~~~~~~l~ 67 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALA---FLP----------SPVKIKAGDYSDCK 67 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhh---ccC----------CCeEEEcCCHHHhC
Confidence 48999999999999999999999 5899999999876654333322210 000 00112245678899
Q ss_pred CCCEEEEecCC--------------ChHHHHHHHHHHHhhCCCCeEEE
Q 008509 226 DVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILA 259 (563)
Q Consensus 226 ~aDlVieav~e--------------~~~~k~~v~~~l~~~~~~~~ii~ 259 (563)
+||+||.+... |..+.+++..++.++++ ++++.
T Consensus 68 ~aDIVIitag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~-~~~vi 114 (306)
T cd05291 68 DADIVVITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGF-DGIFL 114 (306)
T ss_pred CCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CeEEE
Confidence 99999998853 33345566667888776 44443
No 206
>PRK08788 enoyl-CoA hydratase; Validated
Probab=98.34 E-value=1.6e-06 Score=87.22 Aligned_cols=90 Identities=14% Similarity=0.049 Sum_probs=71.2
Q ss_pred CccCCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCccchhccccCCCCChHHHHHHHHHHHHHHHhhCCCC
Q 008509 1 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM 80 (563)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (563)
|++||++++|+||++|||||++||++++.+.+.+++++++.. |
T Consensus 185 llltG~~l~A~eA~~~GLV~~vv~~~el~~~a~~~a~~ia~~--~----------------------------------- 227 (287)
T PRK08788 185 LILSGKLYTAEELHDMGLVDVLVEDGQGEAAVRTFIRKSKRK--L----------------------------------- 227 (287)
T ss_pred HHHcCCCCCHHHHHHCCCCcEecCchHHHHHHHHHHHHHhcC--c-----------------------------------
Confidence 578999999999999999999999999999999999998863 1
Q ss_pred hhHHHHHHHHHHhhccCchhhHHHHHHHHHHHhcCH-HHHHHHHHHhh
Q 008509 81 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLD-TSRGLVHVFFA 127 (563)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~-~~~~~~~aF~~ 127 (563)
.++..+|+..+.....++++.++.|...+..+.++. ..++-+..|..
T Consensus 228 ~~~~a~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (287)
T PRK08788 228 NGWRAMLRARRRVNPLSLEELMDITEIWVDAALQLEEKDLRTMERLVR 275 (287)
T ss_pred cHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 245555666666556688899999988888766554 44566777754
No 207
>PRK15076 alpha-galactosidase; Provisional
Probab=98.32 E-value=1.8e-06 Score=91.75 Aligned_cols=76 Identities=21% Similarity=0.260 Sum_probs=55.2
Q ss_pred eeEEEEcCCcchHHHHH--HHH----hCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecC-
Q 008509 148 RKVAVIGGGLMGSGIAT--AHI----LNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD- 220 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~--~la----~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~- 220 (563)
+||+|||+|.||...+. .++ ..|.+|+++|+++++++.+...+++.+... + ...++..++|
T Consensus 2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~---~---------~~~~i~~ttD~ 69 (431)
T PRK15076 2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESL---G---------ASAKITATTDR 69 (431)
T ss_pred cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhc---C---------CCeEEEEECCH
Confidence 68999999999966655 333 346799999999999886555444444322 1 1135777888
Q ss_pred cccccCCCEEEEecC
Q 008509 221 YSEFKDVDMVIEAVI 235 (563)
Q Consensus 221 ~~~l~~aDlVieav~ 235 (563)
.+++++||+||+++-
T Consensus 70 ~eal~dADfVv~ti~ 84 (431)
T PRK15076 70 REALQGADYVINAIQ 84 (431)
T ss_pred HHHhCCCCEEeEeee
Confidence 488999999999874
No 208
>TIGR00112 proC pyrroline-5-carboxylate reductase. This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.
Probab=98.28 E-value=4.6e-05 Score=75.22 Aligned_cols=166 Identities=15% Similarity=0.092 Sum_probs=111.1
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCc-ccccCCCEEEEecCCChHHHHHHHHHHH
Q 008509 171 IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKDVDMVIEAVIESVPLKQKIFSELE 249 (563)
Q Consensus 171 ~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~aDlVieav~e~~~~k~~v~~~l~ 249 (563)
++|++++|++++++...+. -| +..+.+. +.+.+||+||.||+ +..-.+++.++.
T Consensus 10 ~~I~v~~R~~e~~~~l~~~----------~g-------------~~~~~~~~e~~~~aDiIiLaVk--P~~i~~vl~~l~ 64 (245)
T TIGR00112 10 YDIIVINRSPEKLAALAKE----------LG-------------IVASSDAQEAVKEADVVFLAVK--PQDLEEVLSELK 64 (245)
T ss_pred CeEEEEcCCHHHHHHHHHH----------cC-------------cEEeCChHHHHhhCCEEEEEeC--HHHHHHHHHHHh
Confidence 6899999998876543210 01 2223344 45689999999998 445568888888
Q ss_pred hhCCCCeEEEecCCCCCHHHHhhhccCCCceeecccCCCCCCCCeEEEE-eCCCCCHHHHHHHHHHHHHhCCceEEecC-
Q 008509 250 KACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIV-RTERTSAQVILDLMTVGKIIKKVPVVVGN- 327 (563)
Q Consensus 250 ~~~~~~~ii~sntS~l~i~~la~~~~~~~r~ig~hf~~P~~~~~lvEiv-~~~~t~~~~~~~~~~l~~~lGk~~v~~~d- 327 (563)
..+.++.+|+|...+++++.|.+.+....+++-+.|..|......+..+ .++..+++..+.+..+|..+|+...+-.+
T Consensus 65 ~~~~~~~~ivS~~agi~~~~l~~~~~~~~~ivR~mPn~~~~~~~g~t~~~~~~~~~~~~~~~v~~lf~~~G~~~~v~E~~ 144 (245)
T TIGR00112 65 SEKGKDKLLISIAAGVTLEKLSQLLGGTRRVVRVMPNTPAKVGAGVTAIAANANVSEEDRALVLALFKAVGEVVELPEAL 144 (245)
T ss_pred hhccCCCEEEEecCCCCHHHHHHHcCCCCeEEEECCChHHHHhCCeEEEecCCCCCHHHHHHHHHHHHhCCCEEEECHHH
Confidence 7777788999999999999999888654568888887676665555544 56778888999999999999976644211
Q ss_pred cchhhh-HHH---HHHHHHHHH--HHHHCCCCHHHHHHHH
Q 008509 328 CTGFAV-NRA---FFPYSQSAR--LLVSLGVDVFRIDSAI 361 (563)
Q Consensus 328 ~~Gfi~-nRl---~~~~~~Ea~--~l~~~G~~~~~ID~a~ 361 (563)
...+.+ .-. +..++.+++ ..+..|+++++-.+..
T Consensus 145 ~~~~talsgsgPA~~~~~~~al~~~~v~~Gl~~~~A~~lv 184 (245)
T TIGR00112 145 MDAVTALSGSGPAYVFLFIEALADAGVKQGLPRELALELA 184 (245)
T ss_pred cchHHhhccCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 111110 000 111223322 3456688888777776
No 209
>PRK08272 enoyl-CoA hydratase; Provisional
Probab=98.27 E-value=1.6e-06 Score=88.37 Aligned_cols=43 Identities=26% Similarity=0.254 Sum_probs=40.2
Q ss_pred CccCCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccC
Q 008509 1 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARR 43 (563)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~~~~~~ 43 (563)
|+|||++++|+||+++||||+|||+++|.+.+.++|++++..+
T Consensus 188 llltG~~i~a~eA~~~GLv~~vv~~~~l~~~a~~la~~ia~~~ 230 (302)
T PRK08272 188 LLFTGDCITGAQAAEWGLAVEAVPPEELDERTERLVERIAAVP 230 (302)
T ss_pred HHHcCCccCHHHHHHcCCCceecCHHHHHHHHHHHHHHHHcCC
Confidence 5799999999999999999999999999999999999998743
No 210
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=98.26 E-value=3.1e-06 Score=86.27 Aligned_cols=98 Identities=23% Similarity=0.276 Sum_probs=65.7
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCccccc
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 225 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 225 (563)
.||+|||+|.+|+.+|..++..|. +++|+|++++.++.....+.... ... ....+..+.|+++++
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~------~~~-------~~~~v~~~~dy~~~~ 70 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGS------AFL-------KNPKIEADKDYSVTA 70 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhh------ccC-------CCCEEEECCCHHHhC
Confidence 589999999999999999998886 89999999876544322222111 000 012466668899999
Q ss_pred CCCEEEEecCC--------------ChHHHHHHHHHHHhhCCCCeEE
Q 008509 226 DVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCIL 258 (563)
Q Consensus 226 ~aDlVieav~e--------------~~~~k~~v~~~l~~~~~~~~ii 258 (563)
+||+||.+.-. +..+.+++..++.++++...++
T Consensus 71 ~adivvitaG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vi 117 (312)
T cd05293 71 NSKVVIVTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILL 117 (312)
T ss_pred CCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEE
Confidence 99999986521 2223445556677776554433
No 211
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=98.24 E-value=1.5e-05 Score=81.25 Aligned_cols=174 Identities=11% Similarity=-0.021 Sum_probs=98.5
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHhhhcCeeeecCcccccC
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGK-LTQDKANNALKMLKGVLDYSEFKD 226 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~-~~~~~~~~~~~~i~~~~~~~~l~~ 226 (563)
+||+|||+|.||+-+|..|+++|++|++++++.+.++..++ +.|. +.... ....-.+. ..+.+....
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~----------~~Gl~i~~~g-~~~~~~~~-~~~~~~~~~ 70 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQ----------AGGLTLVEQG-QASLYAIP-AETADAAEP 70 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhh----------cCCeEEeeCC-cceeeccC-CCCcccccc
Confidence 57999999999999999999999999999998776665321 1111 10000 00000011 111234568
Q ss_pred CCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHH-HHhhhccCCCcee-ecccC-----CCCCC--CCeEEE
Q 008509 227 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN-IVGEKTSSQDRII-GAHFF-----SPAHV--MPLLEI 297 (563)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS~l~i~-~la~~~~~~~r~i-g~hf~-----~P~~~--~~lvEi 297 (563)
+|+||.|+-.. ++ .+.++.+.+++.+++++++..-++... .++..+.. ++++ |..++ .|-.. ...-.+
T Consensus 71 ~D~viv~vK~~-~~-~~al~~l~~~l~~~t~vv~lQNGv~~~e~l~~~~~~-~~v~~g~~~~ga~~~~pg~v~~~~~g~~ 147 (305)
T PRK05708 71 IHRLLLACKAY-DA-EPAVASLAHRLAPGAELLLLQNGLGSQDAVAARVPH-ARCIFASSTEGAFRDGDWRVVFAGHGFT 147 (305)
T ss_pred cCEEEEECCHH-hH-HHHHHHHHhhCCCCCEEEEEeCCCCCHHHHHHhCCC-CcEEEEEeeeceecCCCCEEEEeceEEE
Confidence 89999998643 33 367788999999999888777776654 45555543 2333 33222 23110 000011
Q ss_pred EeCCCCCHHHHHHHHHHHHHhCCceEEecCcchhhhHHHH
Q 008509 298 VRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAF 337 (563)
Q Consensus 298 v~~~~t~~~~~~~~~~l~~~lGk~~v~~~d~~Gfi~nRl~ 337 (563)
.-|.. +.+..+.+.+++...|....+..|..+.+.+.++
T Consensus 148 ~~G~~-~~~~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~ 186 (305)
T PRK05708 148 WLGDP-RNPTAPAWLDDLREAGIPHEWTVDILTRLWRKLA 186 (305)
T ss_pred EEcCC-CCcchHHHHHHHHhcCCCCccCHHHHHHHHHHHH
Confidence 11211 1223455555666666555554555555555544
No 212
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=98.23 E-value=3.8e-06 Score=85.74 Aligned_cols=98 Identities=23% Similarity=0.321 Sum_probs=66.6
Q ss_pred eeEEEEcCCcchHHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCccccc
Q 008509 148 RKVAVIGGGLMGSGIATAHILNN--IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 225 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 225 (563)
+||+|||+|.+|.++|..++..| .+|+++|++++.++.....+.. ...... .....++++++++
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~-------~~~~~~-------~~~i~~~d~~~l~ 66 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAH-------GTPFVK-------PVRIYAGDYADCK 66 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHc-------cccccC-------CeEEeeCCHHHhC
Confidence 37999999999999999999999 5899999998876532111111 000100 0122356788999
Q ss_pred CCCEEEEecCC--------------ChHHHHHHHHHHHhhCCCCeEEE
Q 008509 226 DVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILA 259 (563)
Q Consensus 226 ~aDlVieav~e--------------~~~~k~~v~~~l~~~~~~~~ii~ 259 (563)
+||+||.+++. +..+-+++..++.++.+.+.++.
T Consensus 67 ~aDiViita~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv 114 (308)
T cd05292 67 GADVVVITAGANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLV 114 (308)
T ss_pred CCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 99999999874 33345566677888776655443
No 213
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=98.18 E-value=6.3e-06 Score=82.72 Aligned_cols=85 Identities=18% Similarity=0.193 Sum_probs=63.2
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCc-ccccC
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 226 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 226 (563)
++|+|||.|.||.++|..|...|++|+++++.....+.+. ..| .... ++ +.++.
T Consensus 17 KtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~-----------~~G-------------~~v~-sl~Eaak~ 71 (335)
T PRK13403 17 KTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAK-----------ADG-------------FEVM-SVSEAVRT 71 (335)
T ss_pred CEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHH-----------HcC-------------CEEC-CHHHHHhc
Confidence 6899999999999999999999999999987643322211 112 1222 33 57899
Q ss_pred CCEEEEecCCChHHHHHHH-HHHHhhCCCCeEEE
Q 008509 227 VDMVIEAVIESVPLKQKIF-SELEKACPPHCILA 259 (563)
Q Consensus 227 aDlVieav~e~~~~k~~v~-~~l~~~~~~~~ii~ 259 (563)
||+|+.++|. .+.+ .++ .++.+.++++++++
T Consensus 72 ADVV~llLPd-~~t~-~V~~~eil~~MK~GaiL~ 103 (335)
T PRK13403 72 AQVVQMLLPD-EQQA-HVYKAEVEENLREGQMLL 103 (335)
T ss_pred CCEEEEeCCC-hHHH-HHHHHHHHhcCCCCCEEE
Confidence 9999999996 4444 555 57888999998775
No 214
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=98.18 E-value=5.6e-06 Score=84.17 Aligned_cols=96 Identities=25% Similarity=0.344 Sum_probs=66.8
Q ss_pred EEEEcCCcchHHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCcccccCC
Q 008509 150 VAVIGGGLMGSGIATAHILNN--IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 227 (563)
Q Consensus 150 v~ViGaG~mG~~iA~~la~~G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 227 (563)
|+|||+|.+|+.+|..++..| .+++++|++++.++.....+.+..... ...++..+++++++++|
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~-------------~~~~i~~~~~~~~l~~a 67 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFL-------------ATGTIVRGGDYADAADA 67 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhcccc-------------CCCeEEECCCHHHhCCC
Confidence 689999999999999999998 589999999887665443333222110 01134445678999999
Q ss_pred CEEEEecCC--------------ChHHHHHHHHHHHhhCCCCeEEE
Q 008509 228 DMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILA 259 (563)
Q Consensus 228 DlVieav~e--------------~~~~k~~v~~~l~~~~~~~~ii~ 259 (563)
|+||.++.. +..+.+++..++.+++ |++++.
T Consensus 68 DiVIitag~p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~-p~~~vi 112 (300)
T cd00300 68 DIVVITAGAPRKPGETRLDLINRNAPILRSVITNLKKYG-PDAIIL 112 (300)
T ss_pred CEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEE
Confidence 999998752 2334455666788888 555443
No 215
>PLN02602 lactate dehydrogenase
Probab=98.17 E-value=5.1e-06 Score=85.71 Aligned_cols=96 Identities=27% Similarity=0.369 Sum_probs=65.4
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhh--cCeeeecCccc
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNAL--KMLKGVLDYSE 223 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~--~~i~~~~~~~~ 223 (563)
+||+|||+|.+|+.+|..++..|. +++|+|++++.++...-.+.+.. ..+ ..+..+.++++
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~---------------~~~~~~~i~~~~dy~~ 102 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAA---------------AFLPRTKILASTDYAV 102 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhh---------------hcCCCCEEEeCCCHHH
Confidence 599999999999999999998886 79999999876554332222211 111 13444568899
Q ss_pred ccCCCEEEEecCC--------------ChHHHHHHHHHHHhhCCCCeEE
Q 008509 224 FKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCIL 258 (563)
Q Consensus 224 l~~aDlVieav~e--------------~~~~k~~v~~~l~~~~~~~~ii 258 (563)
+++||+||.+.-. +..+.+++...+.++++...++
T Consensus 103 ~~daDiVVitAG~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivi 151 (350)
T PLN02602 103 TAGSDLCIVTAGARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTILL 151 (350)
T ss_pred hCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEE
Confidence 9999999988521 2223445556677776554433
No 216
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=98.16 E-value=3.9e-06 Score=76.57 Aligned_cols=106 Identities=13% Similarity=0.104 Sum_probs=67.4
Q ss_pred eeEEEEcCCcchHHHHHHHHhCC-CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCc-cccc
Q 008509 148 RKVAVIGGGLMGSGIATAHILNN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 225 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 225 (563)
++|+|+|+|.||.+++..++..| .+|+++|++++..+...+.+. ..+ + ... ..+. +.+.
T Consensus 20 ~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~-------~~~-~----------~~~-~~~~~~~~~ 80 (155)
T cd01065 20 KKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFG-------ELG-I----------AIA-YLDLEELLA 80 (155)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHh-------hcc-c----------cee-ecchhhccc
Confidence 68999999999999999999996 799999999887665332111 000 0 011 2233 3478
Q ss_pred CCCEEEEecCCChH-HHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhhhc
Q 008509 226 DVDMVIEAVIESVP-LKQKIFSELEKACPPHCILATNTSTIDLNIVGEKT 274 (563)
Q Consensus 226 ~aDlVieav~e~~~-~k~~v~~~l~~~~~~~~ii~sntS~l~i~~la~~~ 274 (563)
++|+||.|+|.... +....+. ...+++++++.+.+|....+.+.+..
T Consensus 81 ~~Dvvi~~~~~~~~~~~~~~~~--~~~~~~~~~v~D~~~~~~~~~l~~~~ 128 (155)
T cd01065 81 EADLIINTTPVGMKPGDELPLP--PSLLKPGGVVYDVVYNPLETPLLKEA 128 (155)
T ss_pred cCCEEEeCcCCCCCCCCCCCCC--HHHcCCCCEEEEcCcCCCCCHHHHHH
Confidence 99999999998753 1111111 12357788877655543333454443
No 217
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=98.16 E-value=3.4e-05 Score=78.48 Aligned_cols=124 Identities=15% Similarity=0.143 Sum_probs=81.1
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCcccccCC
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 227 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 227 (563)
+||+|+|+|.||+-++..|+++|++|+++-|++. +++.+ +.|..-.............+.+.+.+..+
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~-~~~l~-----------~~GL~i~~~~~~~~~~~~~~~~~~~~~~~ 68 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRR-LEALK-----------KKGLRIEDEGGNFTTPVVAATDAEALGPA 68 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH-HHHHH-----------hCCeEEecCCCccccccccccChhhcCCC
Confidence 5899999999999999999999988988888775 44432 22321100000111112233344677899
Q ss_pred CEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHH-HhhhccCCCceeeccc
Q 008509 228 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNI-VGEKTSSQDRIIGAHF 285 (563)
Q Consensus 228 DlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS~l~i~~-la~~~~~~~r~ig~hf 285 (563)
|+||.++-.- .-.+.++.+.+.++++++|.+..-++.-.+ +....+...-+.|+-+
T Consensus 69 Dlviv~vKa~--q~~~al~~l~~~~~~~t~vl~lqNG~g~~e~l~~~~~~~~il~G~~~ 125 (307)
T COG1893 69 DLVIVTVKAY--QLEEALPSLAPLLGPNTVVLFLQNGLGHEEELRKILPKETVLGGVTT 125 (307)
T ss_pred CEEEEEeccc--cHHHHHHHhhhcCCCCcEEEEEeCCCcHHHHHHHhCCcceEEEEEee
Confidence 9999998543 245788999999999998887766766544 5554443322444433
No 218
>PRK08605 D-lactate dehydrogenase; Validated
Probab=98.15 E-value=1.2e-05 Score=82.85 Aligned_cols=112 Identities=13% Similarity=0.010 Sum_probs=73.7
Q ss_pred eeEEEEcCCcchHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCc-cccc
Q 008509 148 RKVAVIGGGLMGSGIATAHI-LNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 225 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la-~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 225 (563)
++|+|||+|.||..+|..++ ..|.+|+.||+++..... . .+...+++ +.++
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~--------------~-------------~~~~~~~l~ell~ 199 (332)
T PRK08605 147 LKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAKAA--------------T-------------YVDYKDTIEEAVE 199 (332)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCccHhHH--------------h-------------hccccCCHHHHHH
Confidence 58999999999999999995 468899999998643110 0 01123344 4678
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCCCCC--HHHHhhhcc-CCCceeecccC
Q 008509 226 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKTS-SQDRIIGAHFF 286 (563)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS~l~--i~~la~~~~-~~~r~ig~hf~ 286 (563)
+||+|+.++|...+.+.-+=.++.+.++++++|+..+.+.. -..+.+.+. ..-...++--|
T Consensus 200 ~aDvIvl~lP~t~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~ 263 (332)
T PRK08605 200 GADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCARGSLVDTKALLDALDNGLIKGAALDTY 263 (332)
T ss_pred hCCEEEEeCCCCcchhhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCeeEEEEecc
Confidence 99999999998876654222456677899998765444433 335555553 22233444444
No 219
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=98.14 E-value=7.3e-06 Score=83.78 Aligned_cols=96 Identities=24% Similarity=0.279 Sum_probs=64.6
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCccccc
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 225 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 225 (563)
+||+|||+|.+|+.+|..++..|+ +++++|++++.++...-.+.+..... . ...+. +.++++++
T Consensus 7 ~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~---~----------~~~i~-~~~~~~~~ 72 (315)
T PRK00066 7 NKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFT---S----------PTKIY-AGDYSDCK 72 (315)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhcccc---C----------CeEEE-eCCHHHhC
Confidence 589999999999999999999998 89999999887655333232221000 0 01233 46789999
Q ss_pred CCCEEEEecCC--------------ChHHHHHHHHHHHhhCCCCeEE
Q 008509 226 DVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCIL 258 (563)
Q Consensus 226 ~aDlVieav~e--------------~~~~k~~v~~~l~~~~~~~~ii 258 (563)
+||+||.+.-. |..+.+++..++.++.+. +++
T Consensus 73 ~adivIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~-~~v 118 (315)
T PRK00066 73 DADLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFD-GIF 118 (315)
T ss_pred CCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCC-eEE
Confidence 99999987532 233444555666666654 443
No 220
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=98.11 E-value=7.1e-06 Score=73.81 Aligned_cols=87 Identities=20% Similarity=0.246 Sum_probs=60.3
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCcccccC
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE-YLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 226 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~-~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 226 (563)
++|+|||.|..|.+.|++|..+|++|++-.+..+ ..+++ .+.| ....+-.++++.
T Consensus 5 k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A-----------~~~G-------------f~v~~~~eAv~~ 60 (165)
T PF07991_consen 5 KTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKA-----------KADG-------------FEVMSVAEAVKK 60 (165)
T ss_dssp SEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHH-----------HHTT--------------ECCEHHHHHHC
T ss_pred CEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHH-----------HHCC-------------CeeccHHHHHhh
Confidence 6899999999999999999999999999998876 33332 2334 222333368899
Q ss_pred CCEEEEecCCChHHHHHHH-HHHHhhCCCCeEEEe
Q 008509 227 VDMVIEAVIESVPLKQKIF-SELEKACPPHCILAT 260 (563)
Q Consensus 227 aDlVieav~e~~~~k~~v~-~~l~~~~~~~~ii~s 260 (563)
||+|+..+|+.. -.++| .+|.+.++++..+.-
T Consensus 61 aDvV~~L~PD~~--q~~vy~~~I~p~l~~G~~L~f 93 (165)
T PF07991_consen 61 ADVVMLLLPDEV--QPEVYEEEIAPNLKPGATLVF 93 (165)
T ss_dssp -SEEEE-S-HHH--HHHHHHHHHHHHS-TT-EEEE
T ss_pred CCEEEEeCChHH--HHHHHHHHHHhhCCCCCEEEe
Confidence 999999999653 45777 789999999997754
No 221
>PRK06436 glycerate dehydrogenase; Provisional
Probab=98.10 E-value=2.7e-05 Score=79.02 Aligned_cols=124 Identities=11% Similarity=0.064 Sum_probs=83.4
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCc-ccccC
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 226 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 226 (563)
++|+|||.|.||..+|..+...|++|+.||++... .+. . ....++ +.+++
T Consensus 123 ktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~-----------------~~~-~-----------~~~~~l~ell~~ 173 (303)
T PRK06436 123 KSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVN-----------------DGI-S-----------SIYMEPEDIMKK 173 (303)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcc-----------------cCc-c-----------cccCCHHHHHhh
Confidence 68999999999999999888889999999987421 010 0 001234 45689
Q ss_pred CCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCCC--CCHHHHhhhccC-CCceeecccCC--CC---CCCCeEEEE
Q 008509 227 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTSS-QDRIIGAHFFS--PA---HVMPLLEIV 298 (563)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS~--l~i~~la~~~~~-~~r~ig~hf~~--P~---~~~~lvEiv 298 (563)
||+|+.++|-+.+.+.-+-++..+.++++++++..+.+ +.-..+.+++.. .....++-.|. |. +..+-+-+.
T Consensus 174 aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~g~i~~a~lDV~~~EP~~~~~~~~nviiT 253 (303)
T PRK06436 174 SDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVARADVVDKNDMLNFLRNHNDKYYLSDVWWNEPIITETNPDNVILS 253 (303)
T ss_pred CCEEEECCCCCchhhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCceEEEEccCCCCCCCccCCCCCEEEC
Confidence 99999999998887766666777789999988643332 334466666643 34445555553 32 234455555
Q ss_pred eC
Q 008509 299 RT 300 (563)
Q Consensus 299 ~~ 300 (563)
|+
T Consensus 254 PH 255 (303)
T PRK06436 254 PH 255 (303)
T ss_pred Cc
Confidence 55
No 222
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=98.08 E-value=2.4e-05 Score=79.76 Aligned_cols=114 Identities=13% Similarity=0.108 Sum_probs=80.3
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCc-ccccC
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 226 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 226 (563)
++|+|||.|.||..+|..+...|++|+.||++.+... + .. ......++ +.+++
T Consensus 137 ~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~----------------~-~~---------~~~~~~~l~e~l~~ 190 (312)
T PRK15469 137 FTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWP----------------G-VQ---------SFAGREELSAFLSQ 190 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCC----------------C-ce---------eecccccHHHHHhc
Confidence 6899999999999999999999999999998754311 0 00 00111233 46799
Q ss_pred CCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCC--CCCHHHHhhhccC-CCceeecccCC
Q 008509 227 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS--TIDLNIVGEKTSS-QDRIIGAHFFS 287 (563)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS--~l~i~~la~~~~~-~~r~ig~hf~~ 287 (563)
||+|+.++|...+.+.-+-++....++++++|+...= .+.-..|.+++.. .-+..++--|.
T Consensus 191 aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g~i~gaalDVf~ 254 (312)
T PRK15469 191 TRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGAMLDVFS 254 (312)
T ss_pred CCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECCCccccCHHHHHHHHhcCCeeeEEecCCC
Confidence 9999999999998877777778888999998764322 2444567666642 33444555444
No 223
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=98.08 E-value=2.7e-05 Score=85.20 Aligned_cols=115 Identities=17% Similarity=0.103 Sum_probs=78.0
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCc-ccccC
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 226 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 226 (563)
++|+|||.|.||..+|..+...|.+|+.||+.... +... ..| +....++ +.+++
T Consensus 139 ktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~-----------~~g-------------~~~~~~l~ell~~ 193 (525)
T TIGR01327 139 KTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYISP-ERAE-----------QLG-------------VELVDDLDELLAR 193 (525)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHH-----------hcC-------------CEEcCCHHHHHhh
Confidence 68999999999999999999999999999985321 1100 111 1223345 46789
Q ss_pred CCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCCC--CCHHHHhhhccC-CCceeecccCC
Q 008509 227 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTSS-QDRIIGAHFFS 287 (563)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS~--l~i~~la~~~~~-~~r~ig~hf~~ 287 (563)
||+|+.++|-..+.+.-+=++..+.++++++|+..+-+ +.-..|.+++.. .-...++-.|.
T Consensus 194 aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~ 257 (525)
T TIGR01327 194 ADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCARGGIIDEAALYEALEEGHVRAAALDVFE 257 (525)
T ss_pred CCEEEEccCCChhhccCcCHHHHhcCCCCeEEEEcCCCceeCHHHHHHHHHcCCeeEEEEecCC
Confidence 99999999988776655545666789999987644333 344567666642 33344555443
No 224
>PRK07574 formate dehydrogenase; Provisional
Probab=98.08 E-value=4.6e-05 Score=79.60 Aligned_cols=116 Identities=11% Similarity=0.037 Sum_probs=79.0
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCc-ccccC
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 226 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 226 (563)
++|+|||.|.||..+|..+...|.+|..||++....+... ..| +....++ +.++.
T Consensus 193 ktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~-----------~~g-------------~~~~~~l~ell~~ 248 (385)
T PRK07574 193 MTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQ-----------ELG-------------LTYHVSFDSLVSV 248 (385)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchhhHh-----------hcC-------------ceecCCHHHHhhc
Confidence 5899999999999999999999999999999753211100 001 2222344 46799
Q ss_pred CCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCCC--CCHHHHhhhccC-CCceeecccCC
Q 008509 227 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTSS-QDRIIGAHFFS 287 (563)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS~--l~i~~la~~~~~-~~r~ig~hf~~ 287 (563)
||+|+.++|-..+.+.-+=++....++++++|+....+ +.-..|.+++.. .-+-.++--|.
T Consensus 249 aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~i~GAaLDV~~ 312 (385)
T PRK07574 249 CDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTARGKIVDRDAVVRALESGHLAGYAGDVWF 312 (385)
T ss_pred CCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECCCCchhhHHHHHHHHHhCCccEEEEecCC
Confidence 99999999999887666556788889999988644333 333456666542 22334444443
No 225
>PLN03139 formate dehydrogenase; Provisional
Probab=98.07 E-value=3.5e-05 Score=80.46 Aligned_cols=116 Identities=14% Similarity=0.084 Sum_probs=80.1
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCc-ccccC
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 226 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 226 (563)
++|+|||.|.||..+|..+...|.+|..||++....+... +.| +....++ +.+++
T Consensus 200 ktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~-----------~~g-------------~~~~~~l~ell~~ 255 (386)
T PLN03139 200 KTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELEK-----------ETG-------------AKFEEDLDAMLPK 255 (386)
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchhhHh-----------hcC-------------ceecCCHHHHHhh
Confidence 6899999999999999999999999999998753211100 111 1223345 45689
Q ss_pred CCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCCC--CCHHHHhhhcc-CCCceeecccCC
Q 008509 227 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTS-SQDRIIGAHFFS 287 (563)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS~--l~i~~la~~~~-~~~r~ig~hf~~ 287 (563)
||+|+.++|...+.+.-+-+++.+.++++++|+...-+ +.-..+.+++. ..-.-.++--|.
T Consensus 256 sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~l~GAaLDV~~ 319 (386)
T PLN03139 256 CDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNARGAIMDTQAVADACSSGHIGGYGGDVWY 319 (386)
T ss_pred CCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEECCCCchhhHHHHHHHHHcCCceEEEEcCCC
Confidence 99999999998888777667788889999988643333 23345666664 233334555443
No 226
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=98.03 E-value=1.7e-05 Score=80.90 Aligned_cols=123 Identities=22% Similarity=0.230 Sum_probs=76.2
Q ss_pred eeEEEEcC-CcchHHHHHHHHhCCC--eEEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCcc
Q 008509 148 RKVAVIGG-GLMGSGIATAHILNNI--YVVLKEVNS--EYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS 222 (563)
Q Consensus 148 ~kv~ViGa-G~mG~~iA~~la~~G~--~V~l~d~~~--~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 222 (563)
+||+|+|+ |..|..++..++..|+ +|+++|+++ +.++...-.+. +.+...+. ..++..+++++
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~---d~~~~~~~---------~~~i~~~~d~~ 68 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIY---DALAAAGI---------DAEIKISSDLS 68 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhh---hchhccCC---------CcEEEECCCHH
Confidence 48999998 9999999999999987 499999965 33332221111 11111110 11466667788
Q ss_pred cccCCCEEEEecCC------C-h-------HHHHHHHHHHHhhCCCCeEEEecCCCCCHHH--HhhhccC-CCceeec
Q 008509 223 EFKDVDMVIEAVIE------S-V-------PLKQKIFSELEKACPPHCILATNTSTIDLNI--VGEKTSS-QDRIIGA 283 (563)
Q Consensus 223 ~l~~aDlVieav~e------~-~-------~~k~~v~~~l~~~~~~~~ii~sntS~l~i~~--la~~~~~-~~r~ig~ 283 (563)
++++||+||.++.- + . .+-+++...+.+.++ +.++...++..++.. +...... +.|++|+
T Consensus 69 ~l~~aDiViitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~-~~~viv~~npvd~~t~~~~~~~g~~~~~viG~ 145 (309)
T cd05294 69 DVAGSDIVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAP-DTKILVVTNPVDVMTYKALKESGFDKNRVFGL 145 (309)
T ss_pred HhCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEEeCCchHHHHHHHHHhcCCCHHHEeec
Confidence 99999999999841 1 1 334455566777764 666666666555432 2232332 3566665
No 227
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=98.01 E-value=1.4e-05 Score=80.25 Aligned_cols=99 Identities=25% Similarity=0.320 Sum_probs=63.8
Q ss_pred eeEEEEcCCcchHHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCccccc
Q 008509 148 RKVAVIGGGLMGSGIATAHILNN--IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 225 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 225 (563)
+||+|||+|.+|+++|..|+..+ .+++++|++++..+.-.-.+.+... ....-.++..+.++++++
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~------------~~~~~~~i~~~~~y~~~~ 68 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAA------------PLGSDVKITGDGDYEDLK 68 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcch------------hccCceEEecCCChhhhc
Confidence 48999999999999999998775 4899999995544331111111000 000001233334589999
Q ss_pred CCCEEEEec--C------------CChHHHHHHHHHHHhhCCCCeEE
Q 008509 226 DVDMVIEAV--I------------ESVPLKQKIFSELEKACPPHCIL 258 (563)
Q Consensus 226 ~aDlVieav--~------------e~~~~k~~v~~~l~~~~~~~~ii 258 (563)
+||+||.+. | .|..+.+++-+++.+.+++..++
T Consensus 69 ~aDiVvitAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~d~ivl 115 (313)
T COG0039 69 GADIVVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVL 115 (313)
T ss_pred CCCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCeEEE
Confidence 999999886 3 24456666777788887744433
No 228
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=98.00 E-value=1.9e-05 Score=80.32 Aligned_cols=70 Identities=21% Similarity=0.336 Sum_probs=51.2
Q ss_pred eEEEEcCCcchHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhh---c-CeeeecCcc
Q 008509 149 KVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNAL---K-MLKGVLDYS 222 (563)
Q Consensus 149 kv~ViGaG~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~---~-~i~~~~~~~ 222 (563)
||+|||+|.+|+.+|..++..|. +++|+|++++.++...-.+.+.. ... . ++. +.+++
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~---------------~~~~~~~~~i~-~~~y~ 64 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHAT---------------ALTYSTNTKIR-AGDYD 64 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhh---------------ccCCCCCEEEE-ECCHH
Confidence 69999999999999999999887 89999998876544322221111 000 1 233 56889
Q ss_pred cccCCCEEEEec
Q 008509 223 EFKDVDMVIEAV 234 (563)
Q Consensus 223 ~l~~aDlVieav 234 (563)
++++||+||.+.
T Consensus 65 ~~~~aDivvita 76 (307)
T cd05290 65 DCADADIIVITA 76 (307)
T ss_pred HhCCCCEEEECC
Confidence 999999999876
No 229
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=98.00 E-value=1.1e-05 Score=73.22 Aligned_cols=112 Identities=17% Similarity=0.159 Sum_probs=71.9
Q ss_pred EEEEcCCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHhhhcCeeeecCc-ccccCC
Q 008509 150 VAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGK-LTQDKANNALKMLKGVLDY-SEFKDV 227 (563)
Q Consensus 150 v~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~-~~~~~~~~~~~~i~~~~~~-~~l~~a 227 (563)
|+|+|+|.||.-+|..|+++|++|+++++++ .++... +.|. ++..+-+..........+. .....+
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~-----------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIK-----------EQGLTITGPDGDETVQPPIVISAPSADAGPY 68 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHH-----------HHCEEEEETTEEEEEEEEEEESSHGHHHSTE
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhh-----------heeEEEEecccceecccccccCcchhccCCC
Confidence 7899999999999999999999999999988 555421 1121 1000000000000111111 356789
Q ss_pred CEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHH-HHhhhcc
Q 008509 228 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN-IVGEKTS 275 (563)
Q Consensus 228 DlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS~l~i~-~la~~~~ 275 (563)
|+||.|+.... -.+++..+.+++.+++.|++...++... .+.+...
T Consensus 69 D~viv~vKa~~--~~~~l~~l~~~~~~~t~iv~~qNG~g~~~~l~~~~~ 115 (151)
T PF02558_consen 69 DLVIVAVKAYQ--LEQALQSLKPYLDPNTTIVSLQNGMGNEEVLAEYFP 115 (151)
T ss_dssp SEEEE-SSGGG--HHHHHHHHCTGEETTEEEEEESSSSSHHHHHHCHST
T ss_pred cEEEEEecccc--hHHHHHHHhhccCCCcEEEEEeCCCCcHHHHHHHcC
Confidence 99999997543 3467888999999998777777777654 4455543
No 230
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=98.00 E-value=4.6e-05 Score=75.85 Aligned_cols=180 Identities=17% Similarity=0.128 Sum_probs=104.6
Q ss_pred ccceeEEEEcCCcchHHHHHHHHhC--CC-----eEEEEeCCHHHHHHHHHHHHHHHHHHHHc-CCCCHHHHHhhhcCee
Q 008509 145 RGVRKVAVIGGGLMGSGIATAHILN--NI-----YVVLKEVNSEYLLKGIKTIEANVRGLVTR-GKLTQDKANNALKMLK 216 (563)
Q Consensus 145 ~~~~kv~ViGaG~mG~~iA~~la~~--G~-----~V~l~d~~~~~~~~~~~~i~~~~~~~~~~-g~~~~~~~~~~~~~i~ 216 (563)
+...||+|||.|+||+.||..+..+ ++ +|.+|-..++.-.+ ...+...+.+..+. ..+.. .....++.
T Consensus 19 ~~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~-~~~L~eiIN~~heN~KYlpg---~~lP~Nvv 94 (372)
T KOG2711|consen 19 RDPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGE-AEKLTEIINSRHENVKYLPG---IKLPENVV 94 (372)
T ss_pred cCceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCCh-hHHHHHHhccccccccccCC---ccCCCCeE
Confidence 4457999999999999999988765 22 68888776543331 01111111111110 00111 22345678
Q ss_pred eecCc-ccccCCCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHH-----------HHhhhccCCCceee-c
Q 008509 217 GVLDY-SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN-----------IVGEKTSSQDRIIG-A 283 (563)
Q Consensus 217 ~~~~~-~~l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS~l~i~-----------~la~~~~~~~r~ig-~ 283 (563)
.++|+ +++.|||++|.++|.+ ....++.+|..++++++..+|.+-++..+ .|...+.-|-.+++ .
T Consensus 95 Av~dl~ea~~dADilvf~vPhQ--f~~~ic~~l~g~vk~~~~aISL~KG~e~~~~g~~i~liS~iI~~~lgI~~~vL~Ga 172 (372)
T KOG2711|consen 95 AVPDLVEAAKDADILVFVVPHQ--FIPRICEQLKGYVKPGATAISLIKGVEVGEEGPGIRLISQIIHRALGIPCSVLMGA 172 (372)
T ss_pred ecchHHHHhccCCEEEEeCChh--hHHHHHHHHhcccCCCCeEEEeecceeccCCCCceeehHHHHHHHhCCCceeecCC
Confidence 88888 6889999999999976 46689999999999999888876554432 23333433333222 1
Q ss_pred ccCCCCCCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCceEEecCcch
Q 008509 284 HFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG 330 (563)
Q Consensus 284 hf~~P~~~~~lvEiv~~~~t~~~~~~~~~~l~~~lGk~~v~~~d~~G 330 (563)
.+-+-+..-...|-.-+.+.+.+.-..+..+++.--..++++.|..|
T Consensus 173 NiA~EVa~~~f~e~tIg~~~~~~~~~~l~~lf~~p~FrV~~~~D~~~ 219 (372)
T KOG2711|consen 173 NIASEVANEKFCETTIGYKDKKEAGILLKKLFRTPYFRVVVVEDADG 219 (372)
T ss_pred chHHHHHhccccceeEeccchhhcchHHHHHhCCCceEEEEeccchH
Confidence 11111112233343333333333333566777776666666666544
No 231
>PRK05869 enoyl-CoA hydratase; Validated
Probab=97.98 E-value=8.7e-06 Score=79.02 Aligned_cols=43 Identities=23% Similarity=0.477 Sum_probs=40.1
Q ss_pred CccCCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccC
Q 008509 1 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARR 43 (563)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~~~~~~ 43 (563)
|+++|++++|+||+++||||+|+|++++++.+.+++++++..+
T Consensus 163 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~~ 205 (222)
T PRK05869 163 LVFSGRFFDAEEALALGLIDEMVAPDDVYDAAAAWARRFLDGP 205 (222)
T ss_pred HHHcCCCcCHHHHHHCCCCCEeeCchHHHHHHHHHHHHHHcCC
Confidence 5789999999999999999999999999999999999998753
No 232
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=97.95 E-value=5.9e-05 Score=82.66 Aligned_cols=114 Identities=16% Similarity=0.119 Sum_probs=78.6
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCc-ccccC
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 226 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 226 (563)
++|+|||.|.||..+|..+...|.+|+.||+.... +.. ...| +... ++ +.+++
T Consensus 141 ktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~-----------~~~g-------------~~~~-~l~ell~~ 194 (526)
T PRK13581 141 KTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYISP-ERA-----------AQLG-------------VELV-SLDELLAR 194 (526)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHH-----------HhcC-------------CEEE-cHHHHHhh
Confidence 68999999999999999999999999999986421 110 0111 1222 44 46789
Q ss_pred CCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCCC--CCHHHHhhhccC-CCceeecccCC
Q 008509 227 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTSS-QDRIIGAHFFS 287 (563)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS~--l~i~~la~~~~~-~~r~ig~hf~~ 287 (563)
||+|+.++|-..+.+.-+-++..+.++++++++..+-+ +.-..|.+++.. .-.-.++..|.
T Consensus 195 aDiV~l~lP~t~~t~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~ 258 (526)
T PRK13581 195 ADFITLHTPLTPETRGLIGAEELAKMKPGVRIINCARGGIIDEAALAEALKSGKVAGAALDVFE 258 (526)
T ss_pred CCEEEEccCCChHhhcCcCHHHHhcCCCCeEEEECCCCceeCHHHHHHHHhcCCeeEEEEecCC
Confidence 99999999988877655546778889999988644333 334466666642 33334555443
No 233
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=97.94 E-value=2.4e-05 Score=73.25 Aligned_cols=115 Identities=14% Similarity=0.096 Sum_probs=76.7
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCc-ccccC
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 226 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 226 (563)
++|+|||.|.+|..+|..+..-|.+|+.||++........ .. .. ...++ +.++.
T Consensus 37 ~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~-----------~~-------------~~-~~~~l~ell~~ 91 (178)
T PF02826_consen 37 KTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGAD-----------EF-------------GV-EYVSLDELLAQ 91 (178)
T ss_dssp SEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHH-----------HT-------------TE-EESSHHHHHHH
T ss_pred CEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhcc-----------cc-------------cc-eeeehhhhcch
Confidence 6899999999999999999999999999999987543110 10 12 23345 46789
Q ss_pred CCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCCC--CCHHHHhhhccC-CCceeecccCC
Q 008509 227 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTSS-QDRIIGAHFFS 287 (563)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS~--l~i~~la~~~~~-~~r~ig~hf~~ 287 (563)
||+|+.++|-+.+.+.-+=++..+.++++++|+...-+ +.-..+.+++.. +-...++-.|.
T Consensus 92 aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~ 155 (178)
T PF02826_consen 92 ADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALESGKIAGAALDVFE 155 (178)
T ss_dssp -SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHTTSEEEEEESS-S
T ss_pred hhhhhhhhccccccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHhhccCceEEEECCC
Confidence 99999999977765555556677789999988754433 344466666643 33434555444
No 234
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=97.91 E-value=6.9e-05 Score=76.59 Aligned_cols=113 Identities=17% Similarity=0.132 Sum_probs=80.4
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCCeEEEEeC-CHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCc-cccc
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNIYVVLKEV-NSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 225 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~-~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 225 (563)
++|||||+|.+|+.+|..+..-|.+|..||+ ........ .......++ +.++
T Consensus 143 kTvGIiG~G~IG~~va~~l~afgm~v~~~d~~~~~~~~~~--------------------------~~~~~~~~Ld~lL~ 196 (324)
T COG0111 143 KTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRERAGV--------------------------DGVVGVDSLDELLA 196 (324)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEECCCCchhhhcc--------------------------ccceecccHHHHHh
Confidence 6899999999999999999999999999999 43321110 012233455 3679
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCCC---CCHHHHhhhccC-CCceeecccCC
Q 008509 226 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST---IDLNIVGEKTSS-QDRIIGAHFFS 287 (563)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS~---l~i~~la~~~~~-~~r~ig~hf~~ 287 (563)
.||+|+..+|...+.+.-+=++....++++++|+ |+|- +.-..|.+++.. .-+-.++-.|.
T Consensus 197 ~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailI-N~aRG~vVde~aL~~AL~~G~i~gA~lDVf~ 261 (324)
T COG0111 197 EADILTLHLPLTPETRGLINAEELAKMKPGAILI-NAARGGVVDEDALLAALDSGKIAGAALDVFE 261 (324)
T ss_pred hCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEE-ECCCcceecHHHHHHHHHcCCcceEEecCCC
Confidence 9999999999998876666667777899999664 5654 344566666653 23444555564
No 235
>KOG1681 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=97.90 E-value=1.5e-05 Score=74.46 Aligned_cols=94 Identities=18% Similarity=0.106 Sum_probs=80.9
Q ss_pred ccCCCCCCHHHHHhCCCcceecCC-chHHHHHHHHHHhhhccCCccchhccccCCCCChHHHHHHHHHHHHHHHhhCCCC
Q 008509 2 MLLSKSITSEEGWKLGLIDAVVTS-EELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM 80 (563)
Q Consensus 2 iltG~~i~A~eA~~~GLVd~vv~~-~~l~~~A~~~a~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (563)
.+|++.++|.||++.|||.+|+|. +++++.++.+|..++.++ +
T Consensus 192 afTar~f~a~EAl~~GLvSrvf~dk~~ll~~~l~mA~~Ia~KS------------------------------------p 235 (292)
T KOG1681|consen 192 AFTARKFSADEALDSGLVSRVFPDKEELLNGALPMAELIASKS------------------------------------P 235 (292)
T ss_pred HhhhhhcchhhhhhcCcchhhcCCHHHHHhhhHHHHHHhccCC------------------------------------c
Confidence 579999999999999999999984 779999999999998854 3
Q ss_pred hhHHHHHHHHHHhhccCchhhHHHHHHHHHHHhcCHHHHHHHHHHhhhhhh
Q 008509 81 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRAT 131 (563)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~~kr~~ 131 (563)
.|+..+|+.+..+..++.+++|.+-.......+.|+|....+.+=.+|++.
T Consensus 236 vaVqgTK~~L~ysrehsv~~sLnyvatwNms~L~s~Dl~~av~a~m~k~k~ 286 (292)
T KOG1681|consen 236 VAVQGTKENLLYSREHSVEESLNYVATWNMSMLLSDDLVKAVMAQMEKLKT 286 (292)
T ss_pred eeeechHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 578889999999999999999999887777777888888888877776543
No 236
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=97.90 E-value=9.3e-05 Score=78.29 Aligned_cols=109 Identities=15% Similarity=0.120 Sum_probs=72.9
Q ss_pred ceeEEEEcC-CcchHHHHHHHHhC-------CC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCee
Q 008509 147 VRKVAVIGG-GLMGSGIATAHILN-------NI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLK 216 (563)
Q Consensus 147 ~~kv~ViGa-G~mG~~iA~~la~~-------G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~ 216 (563)
.-||+|||+ |.+|..+|..++.. |+ +++++|++++.++.-.-.+.+... ..+..+.
T Consensus 100 ~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~--------------~~~~~v~ 165 (444)
T PLN00112 100 LINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLY--------------PLLREVS 165 (444)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhh--------------hhcCceE
Confidence 358999999 99999999999988 76 899999999887654332322210 1112343
Q ss_pred -eecCcccccCCCEEEEecC--------------CChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHh
Q 008509 217 -GVLDYSEFKDVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVG 271 (563)
Q Consensus 217 -~~~~~~~l~~aDlVieav~--------------e~~~~k~~v~~~l~~~~~~~~ii~sntS~l~i~~la 271 (563)
.+.++++++|||+||.+.- .|..+.+++...|.++..+++++...+ .|++.+.
T Consensus 166 i~~~~ye~~kdaDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVs--NPvDv~t 233 (444)
T PLN00112 166 IGIDPYEVFQDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVG--NPCNTNA 233 (444)
T ss_pred EecCCHHHhCcCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcC--CcHHHHH
Confidence 3567899999999998752 123344555566777556677665443 4555443
No 237
>PLN02928 oxidoreductase family protein
Probab=97.90 E-value=6.8e-05 Score=77.72 Aligned_cols=127 Identities=11% Similarity=0.050 Sum_probs=80.1
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCc-ccccC
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 226 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 226 (563)
++|+|||.|.||..+|..+...|.+|+.||++........ + + +................++ +.+++
T Consensus 160 ktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~------~------~-~~~~~~~~~~~~~~~~~~L~ell~~ 226 (347)
T PLN02928 160 KTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDG------L------L-IPNGDVDDLVDEKGGHEDIYEFAGE 226 (347)
T ss_pred CEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhhhh------h------c-cccccccccccccCcccCHHHHHhh
Confidence 6899999999999999999999999999999743211100 0 0 0000000000000012244 46789
Q ss_pred CCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCCC--CCHHHHhhhccC-CCceeecccCC
Q 008509 227 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTSS-QDRIIGAHFFS 287 (563)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS~--l~i~~la~~~~~-~~r~ig~hf~~ 287 (563)
||+|+.++|-+.+.+.-+-++..+.++++++|+...-+ +.-..|.+++.. .-...++-.|.
T Consensus 227 aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i~gAaLDV~~ 290 (347)
T PLN02928 227 ADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALESGHLGGLAIDVAW 290 (347)
T ss_pred CCEEEECCCCChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEEccCC
Confidence 99999999988877665556777889999988654333 444567676653 33345555554
No 238
>KOG0016 consensus Enoyl-CoA hydratase/isomerase [Lipid transport and metabolism]
Probab=97.83 E-value=4.1e-05 Score=73.32 Aligned_cols=93 Identities=11% Similarity=0.128 Sum_probs=83.3
Q ss_pred CccCCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCccchhccccCCCCChHHHHHHHHHHHHHHHhhCCCC
Q 008509 1 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM 80 (563)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (563)
|+|.|++++|+||...|||+++++.+.+.+.++.-+++++..+ +
T Consensus 171 ~ll~~~kltA~Ea~~~glVskif~~~tf~~~v~~~ikq~s~l~------------------------------------p 214 (266)
T KOG0016|consen 171 MLLFGEKLTAQEACEKGLVSKIFPAETFNEEVLKKIKQYSKLS------------------------------------P 214 (266)
T ss_pred HHHhCCcccHHHHHhcCchhhhcChHHHHHHHHHHHHHHhcCC------------------------------------H
Confidence 5789999999999999999999999999999999999887732 3
Q ss_pred hhHHHHHHHHHHhhccCchhhHHHHHHHHHHHhcCHHHHHHHHHHhhhh
Q 008509 81 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQR 129 (563)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~~kr 129 (563)
......|++++......+..+.+.|.......|.|+|+-+.+..|+.+.
T Consensus 215 ~sl~~~K~L~rs~~k~~l~~an~~E~~~l~~~W~s~e~~~~~~~~~~~~ 263 (266)
T KOG0016|consen 215 ESLLGMKKLLRSNIKEELIKANEEECNVLLKQWVSAECLARFKQYLSKK 263 (266)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhccChHHHHHHHHHhccc
Confidence 5778889999988888888999999999999999999999999998754
No 239
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=97.78 E-value=0.00013 Score=66.08 Aligned_cols=98 Identities=23% Similarity=0.303 Sum_probs=62.2
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCcccccCC
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 227 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 227 (563)
+++.|+|.|..|.++|+.|...|.+|+++|+||-.+-++. ..| ....+-.+++..+
T Consensus 24 k~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~-----------~dG-------------f~v~~~~~a~~~a 79 (162)
T PF00670_consen 24 KRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAA-----------MDG-------------FEVMTLEEALRDA 79 (162)
T ss_dssp SEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHH-----------HTT--------------EEE-HHHHTTT-
T ss_pred CEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhh-----------hcC-------------cEecCHHHHHhhC
Confidence 5799999999999999999999999999999996543321 122 2322222678999
Q ss_pred CEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCCC---CCHHHHhhh
Q 008509 228 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST---IDLNIVGEK 273 (563)
Q Consensus 228 DlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS~---l~i~~la~~ 273 (563)
|++|.+.....-+..+-| ..+++++|+++.++. +.+..+.+.
T Consensus 80 di~vtaTG~~~vi~~e~~----~~mkdgail~n~Gh~d~Eid~~~L~~~ 124 (162)
T PF00670_consen 80 DIFVTATGNKDVITGEHF----RQMKDGAILANAGHFDVEIDVDALEAN 124 (162)
T ss_dssp SEEEE-SSSSSSB-HHHH----HHS-TTEEEEESSSSTTSBTHHHHHTC
T ss_pred CEEEECCCCccccCHHHH----HHhcCCeEEeccCcCceeEeecccccc
Confidence 999998765433333333 457899999877664 455555544
No 240
>PRK05442 malate dehydrogenase; Provisional
Probab=97.77 E-value=7.8e-05 Score=76.37 Aligned_cols=107 Identities=15% Similarity=0.080 Sum_probs=67.2
Q ss_pred ceeEEEEcC-CcchHHHHHHHHhCCC-------eEEEEeCCHH--HHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCee
Q 008509 147 VRKVAVIGG-GLMGSGIATAHILNNI-------YVVLKEVNSE--YLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLK 216 (563)
Q Consensus 147 ~~kv~ViGa-G~mG~~iA~~la~~G~-------~V~l~d~~~~--~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~ 216 (563)
..||+|||+ |.+|+.+|..++..|+ +++|+|+++. .++...-.+.+... .......
T Consensus 4 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~--------------~~~~~~~ 69 (326)
T PRK05442 4 PVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAF--------------PLLAGVV 69 (326)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhh--------------hhcCCcE
Confidence 369999998 9999999999998765 7999999653 22221111111100 0011112
Q ss_pred -eecCcccccCCCEEEEecC--------------CChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHH
Q 008509 217 -GVLDYSEFKDVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILATNTSTIDLNI 269 (563)
Q Consensus 217 -~~~~~~~l~~aDlVieav~--------------e~~~~k~~v~~~l~~~~~~~~ii~sntS~l~i~~ 269 (563)
.+.+++++++||+||.+.- .|..+.+++..+|.++.++++++...| .|++-
T Consensus 70 i~~~~y~~~~daDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs--NPvDv 135 (326)
T PRK05442 70 ITDDPNVAFKDADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVG--NPANT 135 (326)
T ss_pred EecChHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeC--CchHH
Confidence 2467799999999997752 122345566677888887777665544 34443
No 241
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=97.75 E-value=0.00022 Score=74.39 Aligned_cols=108 Identities=18% Similarity=0.178 Sum_probs=69.6
Q ss_pred eeEEEEcC-CcchHHHHHHHHhCCC-------eEEEE--eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCee-
Q 008509 148 RKVAVIGG-GLMGSGIATAHILNNI-------YVVLK--EVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLK- 216 (563)
Q Consensus 148 ~kv~ViGa-G~mG~~iA~~la~~G~-------~V~l~--d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~- 216 (563)
-||+|||+ |.+|+.+|..++..|+ .++|+ |++.+.++.-.-.+.+... ..+..+.
T Consensus 45 ~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~--------------~~~~~v~i 110 (387)
T TIGR01757 45 VNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLY--------------PLLREVSI 110 (387)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhh--------------hhcCceEE
Confidence 58999999 9999999999998875 24445 8888776543322222110 1112333
Q ss_pred eecCcccccCCCEEEEecCC--------------ChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHh
Q 008509 217 GVLDYSEFKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNTSTIDLNIVG 271 (563)
Q Consensus 217 ~~~~~~~l~~aDlVieav~e--------------~~~~k~~v~~~l~~~~~~~~ii~sntS~l~i~~la 271 (563)
.+.++++++|||+||.+.-- |..+.+++...|.++.++++++...| .|++.+.
T Consensus 111 ~~~~y~~~kdaDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVs--NPvDv~t 177 (387)
T TIGR01757 111 GIDPYEVFEDADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVG--NPCNTNA 177 (387)
T ss_pred ecCCHHHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcC--CcHHHHH
Confidence 34678999999999986521 23345556667888787888665443 4554443
No 242
>PLN02988 3-hydroxyisobutyryl-CoA hydrolase
Probab=97.74 E-value=0.0001 Score=77.07 Aligned_cols=126 Identities=14% Similarity=0.148 Sum_probs=85.1
Q ss_pred CccCCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCccchh-----ccccCC----------------CC--
Q 008509 1 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRS-----LHRTDK----------------LG-- 57 (563)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~~~~~~~p~~~~-----~~~~~~----------------~~-- 57 (563)
|+|||++++|++|+++||||++||++++.+.+.+++ +++..+ |.... ...... ++
T Consensus 168 l~LTG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~la-~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~f~~~ 245 (381)
T PLN02988 168 VGLTGARLDGAEMLACGLATHFVPSTRLTALEADLC-RIGSND-PTFASTILDAYTQHPRLKPQSAYHRLDVIDRCFSRR 245 (381)
T ss_pred HHHcCCCCCHHHHHHcCCceEecCHhHHHHHHHHHH-HhhccC-HHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCC
Confidence 578999999999999999999999999988888877 444321 11100 000000 00
Q ss_pred ChHHHHHHH---------HHHHHHHH-hhCCCChhHHHHHHHHHHhhccCchhhHHHHHHHHHHHhc---CHHHHHHHHH
Q 008509 58 SLSEAREVL---------KLARLQAK-KTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVM---LDTSRGLVHV 124 (563)
Q Consensus 58 ~~~~~~~~~---------~~~~~~~~-~~~~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~---s~~~~~~~~a 124 (563)
+..+....+ +-++...+ -..+.|.+...+.+.++.+...++.+.+..|-++-..++. ++|+.|||+|
T Consensus 246 ~~~~i~~~L~~~~~~~~~~wa~~~~~~l~~~sP~sl~vt~~~~~~~~~~sl~e~~~~e~~~~~~~~~~~~~~DF~EGVRA 325 (381)
T PLN02988 246 TVEEIISALEREATQEADGWISATIQALKKASPASLKISLRSIREGRLQGVGQCLIREYRMVCHVMKGEISKDFVEGCRA 325 (381)
T ss_pred CHHHHHHHHHhhccccccHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCchHHHhHHH
Confidence 001000000 11222222 2344566788899999999999999999999999999988 6999999998
Q ss_pred Hhhh
Q 008509 125 FFAQ 128 (563)
Q Consensus 125 F~~k 128 (563)
-+=.
T Consensus 326 ~LiD 329 (381)
T PLN02988 326 ILVD 329 (381)
T ss_pred HhcC
Confidence 7764
No 243
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=97.71 E-value=0.00011 Score=75.25 Aligned_cols=107 Identities=17% Similarity=0.111 Sum_probs=68.8
Q ss_pred eeEEEEcC-CcchHHHHHHHHhCCC-------eEEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhc--Ce
Q 008509 148 RKVAVIGG-GLMGSGIATAHILNNI-------YVVLKEVNS--EYLLKGIKTIEANVRGLVTRGKLTQDKANNALK--ML 215 (563)
Q Consensus 148 ~kv~ViGa-G~mG~~iA~~la~~G~-------~V~l~d~~~--~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~--~i 215 (563)
-||+|||+ |.+|+.+|..++..|+ +++|+|+++ +.++.-.-.+.+.. . .... .+
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~---------~-----~~~~~~~i 69 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCA---------F-----PLLAGVVA 69 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhcc---------c-----cccCCcEE
Confidence 58999998 9999999999998886 899999965 22322111111100 0 0011 12
Q ss_pred eeecCcccccCCCEEEEecC--------------CChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHh
Q 008509 216 KGVLDYSEFKDVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVG 271 (563)
Q Consensus 216 ~~~~~~~~l~~aDlVieav~--------------e~~~~k~~v~~~l~~~~~~~~ii~sntS~l~i~~la 271 (563)
. +.+++++++||+||.+.- .+..+.+++..++.+++++++++...| .|++-+.
T Consensus 70 ~-~~~~~~~~daDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs--NPvDv~t 136 (323)
T TIGR01759 70 T-TDPEEAFKDVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVG--NPANTNA 136 (323)
T ss_pred e-cChHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC--CcHHHHH
Confidence 2 467899999999998752 123445566677888888677665544 4555433
No 244
>PLN00106 malate dehydrogenase
Probab=97.70 E-value=0.00013 Score=74.52 Aligned_cols=93 Identities=20% Similarity=0.304 Sum_probs=60.2
Q ss_pred eeEEEEcC-CcchHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeee-ecC---
Q 008509 148 RKVAVIGG-GLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-VLD--- 220 (563)
Q Consensus 148 ~kv~ViGa-G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~--- 220 (563)
.||+|||+ |.+|+.+|..++..|+ +++++|+++ ....+. .+. .. .. ...+.. +.+
T Consensus 19 ~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~-~~g~a~-Dl~--------~~-------~~-~~~i~~~~~~~d~ 80 (323)
T PLN00106 19 FKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIAN-TPGVAA-DVS--------HI-------NT-PAQVRGFLGDDQL 80 (323)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCC-CCeeEc-hhh--------hC-------Cc-CceEEEEeCCCCH
Confidence 59999999 9999999999998776 899999987 100000 000 00 00 012332 233
Q ss_pred cccccCCCEEEEecC--------------CChHHHHHHHHHHHhhCCCCeEEE
Q 008509 221 YSEFKDVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILA 259 (563)
Q Consensus 221 ~~~l~~aDlVieav~--------------e~~~~k~~v~~~l~~~~~~~~ii~ 259 (563)
++++++||+||.+.- .|..+.+++...+.++.+ ++++.
T Consensus 81 ~~~l~~aDiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p-~aivi 132 (323)
T PLN00106 81 GDALKGADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHCP-NALVN 132 (323)
T ss_pred HHHcCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEE
Confidence 578999999997652 344555667777887774 44443
No 245
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=97.70 E-value=9.3e-05 Score=74.60 Aligned_cols=89 Identities=20% Similarity=0.232 Sum_probs=61.2
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCc-ccccC
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 226 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 226 (563)
++|+|||+|.||..+|..|...|.+|++++++++..+.+. +.|. . .+ ...++ +.+.+
T Consensus 152 k~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~-----------~~g~-~---------~~-~~~~l~~~l~~ 209 (287)
T TIGR02853 152 SNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARIT-----------EMGL-I---------PF-PLNKLEEKVAE 209 (287)
T ss_pred CEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-----------HCCC-e---------ee-cHHHHHHHhcc
Confidence 6899999999999999999999999999999987654321 1121 0 00 01122 45689
Q ss_pred CCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCC
Q 008509 227 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 263 (563)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS 263 (563)
+|+||.++|..+- . .+..+.+++++++.+..|
T Consensus 210 aDiVint~P~~ii-~----~~~l~~~k~~aliIDlas 241 (287)
T TIGR02853 210 IDIVINTIPALVL-T----ADVLSKLPKHAVIIDLAS 241 (287)
T ss_pred CCEEEECCChHHh-C----HHHHhcCCCCeEEEEeCc
Confidence 9999999986531 1 233445677777765544
No 246
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=97.69 E-value=0.00087 Score=66.65 Aligned_cols=151 Identities=12% Similarity=0.021 Sum_probs=100.6
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCc-c-ccc
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S-EFK 225 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~-~l~ 225 (563)
.+|||||.|.||.=+|..+.++|+.|...||++- +.+.+. ...+.+ +++ + .-+
T Consensus 53 l~IaIIGfGnmGqflAetli~aGh~li~hsRsdy--ssaa~~--------yg~~~f---------------t~lhdlcer 107 (480)
T KOG2380|consen 53 LVIAIIGFGNMGQFLAETLIDAGHGLICHSRSDY--SSAAEK--------YGSAKF---------------TLLHDLCER 107 (480)
T ss_pred eEEEEEecCcHHHHHHHHHHhcCceeEecCcchh--HHHHHH--------hccccc---------------ccHHHHHhc
Confidence 5799999999999999999999999999999862 111111 111111 111 1 225
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHhh-CCCCeEEEecCCCC--CHHHHhhhccCCCceeecccCCCCC-------CCCeE
Q 008509 226 DVDMVIEAVIESVPLKQKIFSELEKA-CPPHCILATNTSTI--DLNIVGEKTSSQDRIIGAHFFSPAH-------VMPLL 295 (563)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~~~l~~~-~~~~~ii~sntS~l--~i~~la~~~~~~~r~ig~hf~~P~~-------~~~lv 295 (563)
..|+|+.|+.- .. ...+++..-.. ++.++|+...+|-- +.+....-++..-.++..|++..|. ..|+|
T Consensus 108 hpDvvLlctsi-ls-iekilatypfqrlrrgtlfvdvlSvKefek~lfekYLPkdfDIlctHpmfGPksvnh~wqglpfV 185 (480)
T KOG2380|consen 108 HPDVVLLCTSI-LS-IEKILATYPFQRLRRGTLFVDVLSVKEFEKELFEKYLPKDFDILCTHPMFGPKSVNHEWQGLPFV 185 (480)
T ss_pred CCCEEEEEehh-hh-HHHHHHhcCchhhccceeEeeeeecchhHHHHHHHhCccccceEeecCCcCCCcCCCccccCceE
Confidence 78999999842 11 22344443333 56789999888863 3344445566667889999987654 12555
Q ss_pred EEEe---CCCCCHHHHHHHHHHHHHhCCceEEe
Q 008509 296 EIVR---TERTSAQVILDLMTVGKIIKKVPVVV 325 (563)
Q Consensus 296 Eiv~---~~~t~~~~~~~~~~l~~~lGk~~v~~ 325 (563)
-+-. .....++..+...+++...|...|.+
T Consensus 186 ydkvRig~~~~r~ercE~fleIf~cegckmVem 218 (480)
T KOG2380|consen 186 YDKVRIGYAASRPERCEFFLEIFACEGCKMVEM 218 (480)
T ss_pred EEEeeccccccchHHHHHHHHHHHhcCCeEEEE
Confidence 4321 12345899999999999999888876
No 247
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=97.69 E-value=0.0001 Score=74.94 Aligned_cols=92 Identities=17% Similarity=0.291 Sum_probs=60.5
Q ss_pred eEEEEcC-CcchHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeee-e-cC--c
Q 008509 149 KVAVIGG-GLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-V-LD--Y 221 (563)
Q Consensus 149 kv~ViGa-G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~-~~--~ 221 (563)
||+|||+ |.+|+.+|..++..|+ +++|+|+++ ....+++ + .... ...++.. + .+ +
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~-a~g~a~D-L--------~~~~--------~~~~i~~~~~~~~~~ 62 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAG-AAGVAAD-L--------SHIP--------TAASVKGFSGEEGLE 62 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCC-CcEEEch-h--------hcCC--------cCceEEEecCCCchH
Confidence 6999999 9999999999998886 899999987 2111110 0 1110 0113443 2 23 7
Q ss_pred ccccCCCEEEEecC--------------CChHHHHHHHHHHHhhCCCCeEEE
Q 008509 222 SEFKDVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILA 259 (563)
Q Consensus 222 ~~l~~aDlVieav~--------------e~~~~k~~v~~~l~~~~~~~~ii~ 259 (563)
+++++||+||.+.- .|..+.+++...+.++. |++++.
T Consensus 63 ~~~~daDivvitaG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~~-p~~iii 113 (312)
T TIGR01772 63 NALKGADVVVIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAESC-PKAMIL 113 (312)
T ss_pred HHcCCCCEEEEeCCCCCCCCccHHHHHHHhHHHHHHHHHHHHHhC-CCeEEE
Confidence 89999999998762 34445556666777775 555544
No 248
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=97.69 E-value=0.00019 Score=73.36 Aligned_cols=110 Identities=15% Similarity=0.090 Sum_probs=78.5
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCc-ccccC
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 226 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 226 (563)
++|+|||.|.+|..+|..+..-|.+|..||+..... ..+ +. ..++ +.++.
T Consensus 146 ktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~~~---------------~~~-------------~~-~~~l~ell~~ 196 (311)
T PRK08410 146 KKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKNK---------------NEE-------------YE-RVSLEELLKT 196 (311)
T ss_pred CEEEEECCCHHHHHHHHHHhhcCCEEEEECCCcccc---------------ccC-------------ce-eecHHHHhhc
Confidence 689999999999999999998899999999863210 000 11 1244 46789
Q ss_pred CCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCCC--CCHHHHhhhccC-CCceeecccCC
Q 008509 227 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTSS-QDRIIGAHFFS 287 (563)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS~--l~i~~la~~~~~-~~r~ig~hf~~ 287 (563)
||+|+.++|-..+.+.-+=++..+.++++++|+...-+ +.-..|.+++.. +-. .++-.|.
T Consensus 197 sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~g~i~-AaLDV~~ 259 (311)
T PRK08410 197 SDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGGIVNEKDLAKALDEKDIY-AGLDVLE 259 (311)
T ss_pred CCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCeE-EEEecCC
Confidence 99999999988887666656777789999988643322 444567777653 334 5666664
No 249
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.68 E-value=7.5e-05 Score=76.49 Aligned_cols=107 Identities=16% Similarity=0.082 Sum_probs=68.0
Q ss_pred eeEEEEcC-CcchHHHHHHHHhCCC-------eEEEEeCCHHH--HHHHHHHHHHHHHHHHHcCCCCHHHHH-hhhcCee
Q 008509 148 RKVAVIGG-GLMGSGIATAHILNNI-------YVVLKEVNSEY--LLKGIKTIEANVRGLVTRGKLTQDKAN-NALKMLK 216 (563)
Q Consensus 148 ~kv~ViGa-G~mG~~iA~~la~~G~-------~V~l~d~~~~~--~~~~~~~i~~~~~~~~~~g~~~~~~~~-~~~~~i~ 216 (563)
.||+|||+ |.+|+++|..++..|+ +++|+|++++. ++.-.-.+.+ .. ..+..+.
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~---------------~~~~~~~~~~ 67 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELED---------------CAFPLLAEIV 67 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhh---------------ccccccCceE
Confidence 58999999 9999999999998887 89999996432 2211100100 00 0011122
Q ss_pred -eecCcccccCCCEEEEecCC--------------ChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHh
Q 008509 217 -GVLDYSEFKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNTSTIDLNIVG 271 (563)
Q Consensus 217 -~~~~~~~l~~aDlVieav~e--------------~~~~k~~v~~~l~~~~~~~~ii~sntS~l~i~~la 271 (563)
.+.+++++++||+||.+.-- |..+.+++..+|.++.++++++...| .|++.+.
T Consensus 68 i~~~~~~~~~daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs--NPvD~~t 135 (322)
T cd01338 68 ITDDPNVAFKDADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVG--NPCNTNA 135 (322)
T ss_pred EecCcHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEec--CcHHHHH
Confidence 24677999999999987521 23345566677888886666655443 4555444
No 250
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=97.67 E-value=0.00011 Score=68.38 Aligned_cols=95 Identities=22% Similarity=0.277 Sum_probs=59.7
Q ss_pred eEEEEcCCcchHHHHHHHHhCCC-eEEEEeCCH---HHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCe----eee--
Q 008509 149 KVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS---EYLLKGIKTIEANVRGLVTRGKLTQDKANNALKML----KGV-- 218 (563)
Q Consensus 149 kv~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~---~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i----~~~-- 218 (563)
||.|||+|.||+.++..|++.|+ +++++|.+. +.+.+-. . ... .-|+-..+.....+.++ ...
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~--~---~~~--~vg~~Ka~~~~~~l~~lnp~v~i~~~ 73 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQ--Y---FLS--QIGEPKVEALKENLREINPFVKIEAI 73 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhccc--c---cHh--hCCChHHHHHHHHHHHHCCCCEEEEE
Confidence 58999999999999999999999 599999986 4433211 0 000 11211122222222211 110
Q ss_pred -----c-Cc-ccccCCCEEEEecCCChHHHHHHHHHHHhh
Q 008509 219 -----L-DY-SEFKDVDMVIEAVIESVPLKQKIFSELEKA 251 (563)
Q Consensus 219 -----~-~~-~~l~~aDlVieav~e~~~~k~~v~~~l~~~ 251 (563)
. +. +.++++|+||+| .++.+.|+.+.......
T Consensus 74 ~~~~~~~~~~~~l~~~DlVi~~-~d~~~~r~~i~~~~~~~ 112 (174)
T cd01487 74 NIKIDENNLEGLFGDCDIVVEA-FDNAETKAMLAESLLGN 112 (174)
T ss_pred EeecChhhHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHH
Confidence 0 11 347899999999 67888888787776655
No 251
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.64 E-value=9.5e-05 Score=74.06 Aligned_cols=71 Identities=17% Similarity=0.222 Sum_probs=55.5
Q ss_pred eeEEEEcCC-cchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCcccccC
Q 008509 148 RKVAVIGGG-LMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 226 (563)
Q Consensus 148 ~kv~ViGaG-~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 226 (563)
++|+|||.| .||..||..|.++|+.|++|++....++ +.+++
T Consensus 160 k~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~~l~-------------------------------------e~~~~ 202 (301)
T PRK14194 160 KHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRSTDAK-------------------------------------ALCRQ 202 (301)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCCCHH-------------------------------------HHHhc
Confidence 689999996 9999999999999999999986533111 24578
Q ss_pred CCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecC
Q 008509 227 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNT 262 (563)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~snt 262 (563)
||+||.|++....++..+ +++++++++.+
T Consensus 203 ADIVIsavg~~~~v~~~~-------ik~GaiVIDvg 231 (301)
T PRK14194 203 ADIVVAAVGRPRLIDADW-------LKPGAVVIDVG 231 (301)
T ss_pred CCEEEEecCChhcccHhh-------ccCCcEEEEec
Confidence 999999998765444332 78999887653
No 252
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=97.64 E-value=0.0013 Score=68.83 Aligned_cols=184 Identities=12% Similarity=0.071 Sum_probs=107.6
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCCeEE------EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCc
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNIYVV------LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY 221 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~~V~------l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 221 (563)
++|+|||.|.+|..-|..+...|++|+ .+|.+.+.-+++ .+.|. ...+..
T Consensus 37 KtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA-----------~~dGF-------------~v~~~~ 92 (487)
T PRK05225 37 KKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKA-----------TENGF-------------KVGTYE 92 (487)
T ss_pred CEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHH-----------HhcCC-------------ccCCHH
Confidence 689999999999999999999999999 333333333322 12231 122223
Q ss_pred ccccCCCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhhhccCCCceeecccCCCCC----------C
Q 008509 222 SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAH----------V 291 (563)
Q Consensus 222 ~~l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS~l~i~~la~~~~~~~r~ig~hf~~P~~----------~ 291 (563)
++++.||+|+..+|.. . ...++.++.+.+++++++.-+. +..|..-.-..+..-.++-+-|-.|-+ .
T Consensus 93 Ea~~~ADvVviLlPDt-~-q~~v~~~i~p~LK~Ga~L~fsH-GFni~~~~i~~~~dvdVimvAPKgpG~~vR~~y~~G~G 169 (487)
T PRK05225 93 ELIPQADLVINLTPDK-Q-HSDVVRAVQPLMKQGAALGYSH-GFNIVEVGEQIRKDITVVMVAPKCPGTEVREEYKRGFG 169 (487)
T ss_pred HHHHhCCEEEEcCChH-H-HHHHHHHHHhhCCCCCEEEecC-CceeeeCceeCCCCCcEEEECCCCCCchHHHHHhcCCC
Confidence 6789999999999977 3 7788899999999999875321 222322111111122333333332221 2
Q ss_pred CCeEEEEe-CCCCCHHHHHHHHHHHHHhCCce---EEe--c-C-cchhhhHHH-HHHHH---HH--HHHHHHCCCCHHHH
Q 008509 292 MPLLEIVR-TERTSAQVILDLMTVGKIIKKVP---VVV--G-N-CTGFAVNRA-FFPYS---QS--ARLLVSLGVDVFRI 357 (563)
Q Consensus 292 ~~lvEiv~-~~~t~~~~~~~~~~l~~~lGk~~---v~~--~-d-~~Gfi~nRl-~~~~~---~E--a~~l~~~G~~~~~I 357 (563)
.|.+--|- -...+....+.+..+...+|... +.. . + ....+..|. |+..+ .+ .-.++++|++|+.-
T Consensus 170 vp~l~AV~~~qD~~g~a~~~ala~a~~iG~~ragv~~ttf~~E~~sDL~GEq~vLcG~~~~~~~~~Fe~lve~G~~pe~A 249 (487)
T PRK05225 170 VPTLIAVHPENDPKGEGMAIAKAWAAATGGHRAGVLESSFVAEVKSDLMGEQTILCGMLQAGSLLCFDKLVAEGTDPAYA 249 (487)
T ss_pred ceEEEEEeecCCCCchHHHHHHHHHHHhCCCccceeecchHHHHhhcchhhHHHHHhHHHHHHHHHHHHHHHcCCCHHHH
Confidence 23333333 13455667888999999988763 222 1 1 112233332 33322 22 34678889988765
Q ss_pred H
Q 008509 358 D 358 (563)
Q Consensus 358 D 358 (563)
=
T Consensus 250 ~ 250 (487)
T PRK05225 250 E 250 (487)
T ss_pred H
Confidence 4
No 253
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=97.63 E-value=0.00037 Score=73.91 Aligned_cols=111 Identities=19% Similarity=0.225 Sum_probs=77.8
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCc-ccccC
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 226 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 226 (563)
++|+|||.|.+|..+|..+...|.+|..||+.+... .+ ......++ +.++.
T Consensus 152 ktvGIiG~G~IG~~vA~~~~~fGm~V~~~d~~~~~~----------------~~------------~~~~~~~l~ell~~ 203 (409)
T PRK11790 152 KTLGIVGYGHIGTQLSVLAESLGMRVYFYDIEDKLP----------------LG------------NARQVGSLEELLAQ 203 (409)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCCcccc----------------cC------------CceecCCHHHHHhh
Confidence 689999999999999999999999999999864210 00 11223345 46799
Q ss_pred CCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCCC---CCHHHHhhhccC-CCceeecccCC
Q 008509 227 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST---IDLNIVGEKTSS-QDRIIGAHFFS 287 (563)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS~---l~i~~la~~~~~-~~r~ig~hf~~ 287 (563)
||+|+.++|-..+.+.-+=++....++++++|+ |+|. +.-..|.+++.. .-.-.++--|.
T Consensus 204 sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lI-N~aRG~~vde~aL~~aL~~g~i~gaalDVf~ 267 (409)
T PRK11790 204 SDVVSLHVPETPSTKNMIGAEELALMKPGAILI-NASRGTVVDIDALADALKSGHLAGAAIDVFP 267 (409)
T ss_pred CCEEEEcCCCChHHhhccCHHHHhcCCCCeEEE-ECCCCcccCHHHHHHHHHcCCceEEEEcCCC
Confidence 999999999888776655566777899999886 4443 444566666642 23334454443
No 254
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=97.62 E-value=0.00021 Score=74.61 Aligned_cols=111 Identities=12% Similarity=0.119 Sum_probs=72.3
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCc-ccccC
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 226 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 226 (563)
++|+|||.|.||+.+|..+...|++|.+||+.....+ +. . ...++ +.+++
T Consensus 117 ktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~~~~~~----------------~~------------~-~~~~l~ell~~ 167 (381)
T PRK00257 117 RTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPRQEAE----------------GD------------G-DFVSLERILEE 167 (381)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCcccccc----------------cC------------c-cccCHHHHHhh
Confidence 6899999999999999999999999999998543110 00 0 01234 35689
Q ss_pred CCEEEEecCCChH---HHHHHH-HHHHhhCCCCeEEEecCCC--CCHHHHhhhcc-CCCceeecccCC
Q 008509 227 VDMVIEAVIESVP---LKQKIF-SELEKACPPHCILATNTST--IDLNIVGEKTS-SQDRIIGAHFFS 287 (563)
Q Consensus 227 aDlVieav~e~~~---~k~~v~-~~l~~~~~~~~ii~sntS~--l~i~~la~~~~-~~~r~ig~hf~~ 287 (563)
||+|+.++|-..+ -.+.++ ++....++++++|+..+-+ +.-..+.+.+. ......++-.|.
T Consensus 168 aDiV~lh~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVde~AL~~aL~~g~i~~a~LDV~e 235 (381)
T PRK00257 168 CDVISLHTPLTKEGEHPTRHLLDEAFLASLRPGAWLINASRGAVVDNQALREALLSGEDLDAVLDVWE 235 (381)
T ss_pred CCEEEEeCcCCCCccccccccCCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhCCCcEEEEeCCC
Confidence 9999999996652 122333 4566678999988643333 33445666553 233344555453
No 255
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.62 E-value=0.00018 Score=73.16 Aligned_cols=94 Identities=19% Similarity=0.276 Sum_probs=60.4
Q ss_pred eeEEEEcC-CcchHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeee-c-C--
Q 008509 148 RKVAVIGG-GLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV-L-D-- 220 (563)
Q Consensus 148 ~kv~ViGa-G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~-~-- 220 (563)
+||+|||+ |.+|+.+|..++..|+ +++++|++ .++.-.-.+ .... ....+..+ . +
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~--~a~g~alDL--------~~~~--------~~~~i~~~~~~~~~ 62 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV--NTPGVAADL--------SHIN--------TPAKVTGYLGPEEL 62 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC--ccceeehHh--------HhCC--------CcceEEEecCCCch
Confidence 48999999 9999999999998885 89999998 211100001 1110 01135542 3 3
Q ss_pred cccccCCCEEEEecC--------------CChHHHHHHHHHHHhhCCCCeEEEe
Q 008509 221 YSEFKDVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILAT 260 (563)
Q Consensus 221 ~~~l~~aDlVieav~--------------e~~~~k~~v~~~l~~~~~~~~ii~s 260 (563)
++++++||+||.+.- .|..+.+++...+.++. |++++..
T Consensus 63 y~~~~daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~-p~a~viv 115 (310)
T cd01337 63 KKALKGADVVVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKAC-PKALILI 115 (310)
T ss_pred HHhcCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEE
Confidence 799999999998762 23344455566677775 4565543
No 256
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=97.58 E-value=0.00018 Score=78.48 Aligned_cols=68 Identities=13% Similarity=0.186 Sum_probs=56.3
Q ss_pred chHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCcHhHHHHHhCHH-HHHHHHHHHH
Q 008509 458 TEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGAN-YVYTSLKKWS 526 (563)
Q Consensus 458 ~~~~i~~r~l~~~~~ea~~~l~~gv~~~~~diD~~~~~g~g~p~~~gGp~~~~d~~G~~-~~~~~~~~~~ 526 (563)
.++++.||++.++++||+.++++|++ |+++||.++..|+|++.-.-|||+..|..|.+ .+.+.++.+.
T Consensus 183 ~~gfi~nrl~~a~~~EA~~L~~~g~~-s~~~id~~~~~g~g~~~~~~Gpf~~~dl~g~~~g~~~~~~~~~ 251 (495)
T PRK07531 183 IDAFVGDRLLEALWREALWLVKDGIA-TTEEIDDVIRYSFGLRWAQMGLFETYRIAGGEAGMRHFLAQFG 251 (495)
T ss_pred CcchhHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHhhccCCCccccchHHHHHhcCcHHHHHHHHHHhc
Confidence 57899999999999999999999999 99999999999998763334999999999844 4445544443
No 257
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=97.54 E-value=0.00041 Score=70.34 Aligned_cols=90 Identities=19% Similarity=0.227 Sum_probs=62.4
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCc-ccccC
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 226 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 226 (563)
++|.|||+|.+|..++..+...|.+|+++|+++++.+.+. ..|. + .....++ +.+.+
T Consensus 153 ~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~-----------~~G~-~----------~~~~~~l~~~l~~ 210 (296)
T PRK08306 153 SNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARIT-----------EMGL-S----------PFHLSELAEEVGK 210 (296)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-----------HcCC-e----------eecHHHHHHHhCC
Confidence 6899999999999999999999999999999987644321 1121 0 0001122 45688
Q ss_pred CCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCCC
Q 008509 227 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 264 (563)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS~ 264 (563)
+|+||.++|..+ +-++..+.++++++|.+..|.
T Consensus 211 aDiVI~t~p~~~-----i~~~~l~~~~~g~vIIDla~~ 243 (296)
T PRK08306 211 IDIIFNTIPALV-----LTKEVLSKMPPEALIIDLASK 243 (296)
T ss_pred CCEEEECCChhh-----hhHHHHHcCCCCcEEEEEccC
Confidence 999999998532 223444557788887765543
No 258
>PLN02267 enoyl-CoA hydratase/isomerase family protein
Probab=97.53 E-value=0.00011 Score=72.31 Aligned_cols=43 Identities=28% Similarity=0.479 Sum_probs=39.1
Q ss_pred CccCCCCCCHHHHHhCCCcceecCC-chHHHHHHHHHHhhhccC
Q 008509 1 MMLLSKSITSEEGWKLGLIDAVVTS-EELLKVSRLWALDIAARR 43 (563)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~-~~l~~~A~~~a~~~~~~~ 43 (563)
|++||++++|+||+++||||+|+|+ +++++.|.++|+++++.+
T Consensus 160 llltG~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~A~~ia~~~ 203 (239)
T PLN02267 160 VLLRAAKLTAEEAVEMGIVDSAHDSAEETVEAAVRLGEELAARK 203 (239)
T ss_pred HHHcCCcCCHHHHHHCCCcceecCCHHHHHHHHHHHHHHHhhcc
Confidence 5789999999999999999999985 689999999999998753
No 259
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=97.52 E-value=0.00016 Score=73.39 Aligned_cols=94 Identities=27% Similarity=0.322 Sum_probs=60.6
Q ss_pred EEcCCcchHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCcccccCCCE
Q 008509 152 VIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDM 229 (563)
Q Consensus 152 ViGaG~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aDl 229 (563)
|||+|.+|+.+|..++..|+ +++++|++++.++.....+.+...-. + ....+. ..+++++++||+
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~---~---------~~~~i~-~~~~~~~~daDi 67 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFL---P---------TPKKIR-SGDYSDCKDADL 67 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhccc---C---------CCeEEe-cCCHHHHCCCCE
Confidence 69999999999999998886 79999998876554332222211000 0 001232 467899999999
Q ss_pred EEEecCC--------------ChHHHHHHHHHHHhhCCCCeEEE
Q 008509 230 VIEAVIE--------------SVPLKQKIFSELEKACPPHCILA 259 (563)
Q Consensus 230 Vieav~e--------------~~~~k~~v~~~l~~~~~~~~ii~ 259 (563)
||.+.-. +..+.+++..++.++. +++++.
T Consensus 68 vVitag~~rk~g~~R~dll~~N~~i~~~~~~~i~~~~-p~~~vi 110 (299)
T TIGR01771 68 VVITAGAPQKPGETRLELVGRNVRIMKSIVPEVVKSG-FDGIFL 110 (299)
T ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEE
Confidence 9987632 3334455566677765 455443
No 260
>PTZ00325 malate dehydrogenase; Provisional
Probab=97.51 E-value=0.00027 Score=72.21 Aligned_cols=34 Identities=26% Similarity=0.296 Sum_probs=30.1
Q ss_pred cceeEEEEcC-CcchHHHHHHHHhCC--CeEEEEeCC
Q 008509 146 GVRKVAVIGG-GLMGSGIATAHILNN--IYVVLKEVN 179 (563)
Q Consensus 146 ~~~kv~ViGa-G~mG~~iA~~la~~G--~~V~l~d~~ 179 (563)
.++||+|||+ |.+|+.+|..++..| .+++++|++
T Consensus 7 ~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~ 43 (321)
T PTZ00325 7 KMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIV 43 (321)
T ss_pred CCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecC
Confidence 4679999999 999999999999665 589999993
No 261
>PRK06932 glycerate dehydrogenase; Provisional
Probab=97.50 E-value=0.00061 Score=69.69 Aligned_cols=109 Identities=15% Similarity=0.157 Sum_probs=77.3
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCc-ccccC
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 226 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 226 (563)
++|+|||.|.+|..+|..+..-|.+|+.||+.... . ... ...++ +.++.
T Consensus 148 ktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~--~------------~~~----------------~~~~l~ell~~ 197 (314)
T PRK06932 148 STLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGAS--V------------CRE----------------GYTPFEEVLKQ 197 (314)
T ss_pred CEEEEECCCHHHHHHHHHHhcCCCEEEEECCCccc--c------------ccc----------------ccCCHHHHHHh
Confidence 68999999999999999998889999999975321 0 000 01234 46789
Q ss_pred CCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCCC---CCHHHHhhhccC-CCceeecccCC
Q 008509 227 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST---IDLNIVGEKTSS-QDRIIGAHFFS 287 (563)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS~---l~i~~la~~~~~-~~r~ig~hf~~ 287 (563)
||+|+.++|-..+.+.-+=++..+.++++++|+. ++- +.-..|.+++.. .-.-.++-.|.
T Consensus 198 sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN-~aRG~~Vde~AL~~aL~~g~i~gAaLDV~~ 261 (314)
T PRK06932 198 ADIVTLHCPLTETTQNLINAETLALMKPTAFLIN-TGRGPLVDEQALLDALENGKIAGAALDVLV 261 (314)
T ss_pred CCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEE-CCCccccCHHHHHHHHHcCCccEEEEecCC
Confidence 9999999998887766555677788999998864 443 445567777652 33344555554
No 262
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=97.49 E-value=0.00084 Score=68.87 Aligned_cols=113 Identities=13% Similarity=0.115 Sum_probs=77.3
Q ss_pred eeEEEEcCCcchHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCc-cccc
Q 008509 148 RKVAVIGGGLMGSGIATAHI-LNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 225 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la-~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 225 (563)
++|+|||.|.+|..+|..+. .-|.+|..+|+....... ...+ +.. .++ +.++
T Consensus 146 ktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~~~~~~------------~~~~-------------~~~-~~l~ell~ 199 (323)
T PRK15409 146 KTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEAE------------ERFN-------------ARY-CDLDTLLQ 199 (323)
T ss_pred CEEEEEcccHHHHHHHHHHHhcCCCEEEEECCCCchhhH------------HhcC-------------cEe-cCHHHHHH
Confidence 68999999999999999987 679999999986421100 0001 111 244 4679
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCCC---CCHHHHhhhccC-CCceeecccCC
Q 008509 226 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST---IDLNIVGEKTSS-QDRIIGAHFFS 287 (563)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS~---l~i~~la~~~~~-~~r~ig~hf~~ 287 (563)
.||+|+.++|-+.+.+.-+=++..+.++++++|+ |++- +.-..|.+++.. +-.-.++-.|.
T Consensus 200 ~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lI-N~aRG~vVde~AL~~AL~~g~i~gAaLDVf~ 264 (323)
T PRK15409 200 ESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFI-NAGRGPVVDENALIAALQKGEIHAAGLDVFE 264 (323)
T ss_pred hCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEE-ECCCccccCHHHHHHHHHcCCeeEEEeecCC
Confidence 9999999999988876666567778899999886 4543 444567777653 22334455443
No 263
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=97.48 E-value=0.00025 Score=63.19 Aligned_cols=74 Identities=18% Similarity=0.171 Sum_probs=52.5
Q ss_pred ceeEEEEcCCcchHHHHHHHHhCCCe-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCc-ccc
Q 008509 147 VRKVAVIGGGLMGSGIATAHILNNIY-VVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 224 (563)
Q Consensus 147 ~~kv~ViGaG~mG~~iA~~la~~G~~-V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 224 (563)
-++|.|||+|-||.+++..|+..|.+ |++++|+.++++...+.+ ....+ .+...+++ +.+
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~--------~~~~~----------~~~~~~~~~~~~ 73 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEF--------GGVNI----------EAIPLEDLEEAL 73 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHH--------TGCSE----------EEEEGGGHCHHH
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHc--------Ccccc----------ceeeHHHHHHHH
Confidence 37899999999999999999999986 999999998876643211 00000 11222333 357
Q ss_pred cCCCEEEEecCCCh
Q 008509 225 KDVDMVIEAVIESV 238 (563)
Q Consensus 225 ~~aDlVieav~e~~ 238 (563)
.++|+||.|+|..+
T Consensus 74 ~~~DivI~aT~~~~ 87 (135)
T PF01488_consen 74 QEADIVINATPSGM 87 (135)
T ss_dssp HTESEEEE-SSTTS
T ss_pred hhCCeEEEecCCCC
Confidence 89999999988664
No 264
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=97.48 E-value=0.00029 Score=72.25 Aligned_cols=106 Identities=17% Similarity=0.151 Sum_probs=65.3
Q ss_pred eEEEEcC-CcchHHHHHHHHhCCC-------eEEEEeCCHHH--HHHHHHHHHHHHHHHHHcCCCCHHHHH-hhhcCeee
Q 008509 149 KVAVIGG-GLMGSGIATAHILNNI-------YVVLKEVNSEY--LLKGIKTIEANVRGLVTRGKLTQDKAN-NALKMLKG 217 (563)
Q Consensus 149 kv~ViGa-G~mG~~iA~~la~~G~-------~V~l~d~~~~~--~~~~~~~i~~~~~~~~~~g~~~~~~~~-~~~~~i~~ 217 (563)
||+|||+ |.+|+.+|..++..|+ +++|+|+++.. ++.-. ++-.+.. .....+..
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~---------------~Dl~d~~~~~~~~~~~ 65 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVV---------------MELMDCAFPLLDGVVP 65 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeE---------------eehhcccchhcCceec
Confidence 6899999 9999999999998654 69999996542 21100 0000111 11122333
Q ss_pred e-cCcccccCCCEEEEecCC--------------ChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHh
Q 008509 218 V-LDYSEFKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNTSTIDLNIVG 271 (563)
Q Consensus 218 ~-~~~~~l~~aDlVieav~e--------------~~~~k~~v~~~l~~~~~~~~ii~sntS~l~i~~la 271 (563)
+ .+++++++||+||.+.-. |..+.+++..++.+++++++++...| .|++-+.
T Consensus 66 ~~~~~~~~~~aDiVVitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvs--NPvDv~t 132 (324)
T TIGR01758 66 THDPAVAFTDVDVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVG--NPANTNA 132 (324)
T ss_pred cCChHHHhCCCCEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC--CcHHHHH
Confidence 3 347999999999976521 22234455667788776677665544 4555444
No 265
>KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=97.47 E-value=0.001 Score=64.09 Aligned_cols=151 Identities=15% Similarity=0.121 Sum_probs=107.8
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCC----eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCccc
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNI----YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE 223 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~----~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 223 (563)
++|++||+|.|...|+..+.+.|+ ++..+-.+...... .+...| .-...++.+.
T Consensus 1 ~~~gfigag~ma~ala~g~~~~Gi~~~~~i~~s~~~~~~~~~----------~~~~~g------------~~~~~~n~~~ 58 (267)
T KOG3124|consen 1 MKVGFIGAGNMAQALASGFVASGIIEANRIWASVQTERSLGL----------MFEALG------------VKTVFTNLEV 58 (267)
T ss_pred CceeEechhhhHHHHHhcccccCCCchhheeeecCchhhhhh----------hhhcCC------------ceeeechHHH
Confidence 379999999999999999999986 33333332111110 011111 1223344677
Q ss_pred ccCCCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhhhccCCCceeecccCCCCCCCCeEE-EEeCCC
Q 008509 224 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLE-IVRTER 302 (563)
Q Consensus 224 l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS~l~i~~la~~~~~~~r~ig~hf~~P~~~~~lvE-iv~~~~ 302 (563)
++.+|+++.++- +.+...++.++......+.|+.|..-+.+++.+...+.-+.|++...+..|........ +..+..
T Consensus 59 ~~~s~v~~~svK--p~~i~~vls~~~~~~~~~~iivS~aaG~tl~~l~~~l~~~~rviRvmpNtp~~v~eg~sv~~~g~~ 136 (267)
T KOG3124|consen 59 LQASDVVFLSVK--PQVIESVLSEIKPKVSKGKIIVSVAAGKTLSSLESKLSPPTRVIRVMPNTPSVVGEGASVYAIGCH 136 (267)
T ss_pred HhhccceeEeec--chhHHHHhhcCccccccceEEEEEeecccHHHHHHhcCCCCceEEecCCChhhhhcCcEEEeeCCC
Confidence 889999999984 33445666666665666779999999999999998888778999999988988777776 446667
Q ss_pred CCHHHHHHHHHHHHHhCCce
Q 008509 303 TSAQVILDLMTVGKIIKKVP 322 (563)
Q Consensus 303 t~~~~~~~~~~l~~~lGk~~ 322 (563)
...+..+.+.+++...|+..
T Consensus 137 ~~~~D~~l~~~ll~~vG~~~ 156 (267)
T KOG3124|consen 137 ATNEDLELVEELLSAVGLCE 156 (267)
T ss_pred cchhhHHHHHHHHHhcCcce
Confidence 77777899999999988643
No 266
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.46 E-value=0.00025 Score=72.62 Aligned_cols=106 Identities=17% Similarity=0.148 Sum_probs=66.8
Q ss_pred eEEEEcC-CcchHHHHHHHHhCCC-------eEEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCCCHHHHH-hhhcCeee
Q 008509 149 KVAVIGG-GLMGSGIATAHILNNI-------YVVLKEVNS--EYLLKGIKTIEANVRGLVTRGKLTQDKAN-NALKMLKG 217 (563)
Q Consensus 149 kv~ViGa-G~mG~~iA~~la~~G~-------~V~l~d~~~--~~~~~~~~~i~~~~~~~~~~g~~~~~~~~-~~~~~i~~ 217 (563)
||+|||+ |.+|+.+|..++..|+ +++|+|+++ +.++... ++-.+.. ........
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~---------------~Dl~d~~~~~~~~~~i 66 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVV---------------MELQDCAFPLLKGVVI 66 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceee---------------eehhhhcccccCCcEE
Confidence 7999999 9999999999998664 599999987 4322111 0000000 00111122
Q ss_pred -ecCcccccCCCEEEEecC--------------CChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHh
Q 008509 218 -VLDYSEFKDVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVG 271 (563)
Q Consensus 218 -~~~~~~l~~aDlVieav~--------------e~~~~k~~v~~~l~~~~~~~~ii~sntS~l~i~~la 271 (563)
..+++++++||+||.+.- .+..+.+++..++.+++++++++...| .|++-+.
T Consensus 67 ~~~~~~~~~~aDiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs--NPvD~~t 133 (323)
T cd00704 67 TTDPEEAFKDVDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVG--NPANTNA 133 (323)
T ss_pred ecChHHHhCCCCEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeC--CcHHHHH
Confidence 456789999999997652 134455666677888876666655443 5655444
No 267
>PLN02306 hydroxypyruvate reductase
Probab=97.46 E-value=0.0012 Score=69.32 Aligned_cols=127 Identities=19% Similarity=0.172 Sum_probs=79.2
Q ss_pred eeEEEEcCCcchHHHHHHHH-hCCCeEEEEeCCHHH-HHHHHHHHHHHHH-HHHHcCCCCHHHHHhhhcCeeeecCc-cc
Q 008509 148 RKVAVIGGGLMGSGIATAHI-LNNIYVVLKEVNSEY-LLKGIKTIEANVR-GLVTRGKLTQDKANNALKMLKGVLDY-SE 223 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la-~~G~~V~l~d~~~~~-~~~~~~~i~~~~~-~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 223 (563)
++|+|||.|.+|..+|..+. .-|.+|..||+.... .+.... .+. .....+.. . ..+....++ +.
T Consensus 166 ktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~----~~~~~l~~~~~~---~-----~~~~~~~~L~el 233 (386)
T PLN02306 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVT----AYGQFLKANGEQ---P-----VTWKRASSMEEV 233 (386)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhh----hhcccccccccc---c-----ccccccCCHHHH
Confidence 68999999999999999986 669999999997542 111000 000 00000000 0 011123355 46
Q ss_pred ccCCCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCCC---CCHHHHhhhccC-CCceeecccCC
Q 008509 224 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST---IDLNIVGEKTSS-QDRIIGAHFFS 287 (563)
Q Consensus 224 l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS~---l~i~~la~~~~~-~~r~ig~hf~~ 287 (563)
++.||+|+.++|-+.+.+.-+=++..+.++++++|+ |++- +.-..+.+++.. +-...++--|.
T Consensus 234 l~~sDiV~lh~Plt~~T~~lin~~~l~~MK~ga~lI-N~aRG~lVDe~AL~~AL~sg~i~gAaLDVf~ 300 (386)
T PLN02306 234 LREADVISLHPVLDKTTYHLINKERLALMKKEAVLV-NASRGPVIDEVALVEHLKANPMFRVGLDVFE 300 (386)
T ss_pred HhhCCEEEEeCCCChhhhhhcCHHHHHhCCCCeEEE-ECCCccccCHHHHHHHHHhCCeeEEEEeCCC
Confidence 799999999999888776666667788899999886 4443 344566666642 23334555554
No 268
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=97.44 E-value=0.0011 Score=70.62 Aligned_cols=75 Identities=21% Similarity=0.279 Sum_probs=50.7
Q ss_pred eeEEEEcCCc-chHHHHHHHHhC-----CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCc
Q 008509 148 RKVAVIGGGL-MGSGIATAHILN-----NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY 221 (563)
Q Consensus 148 ~kv~ViGaG~-mG~~iA~~la~~-----G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 221 (563)
.||+|||+|. ....+...++.. +-+|+++|+|+++++... ...++..+....+ -++..|+|.
T Consensus 1 ~KI~iIGgGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~----~l~~~~~~~~g~~--------~~v~~ttD~ 68 (425)
T cd05197 1 VKIAIIGGGSSFTPELVSGLLKTPEELPISEVTLYDIDEERLDIIL----TIAKRYVEEVGAD--------IKFEKTMDL 68 (425)
T ss_pred CEEEEECCchHhHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHH----HHHHHHHHhhCCC--------eEEEEeCCH
Confidence 4899999987 344555555543 468999999999987632 2333333321111 147778888
Q ss_pred -ccccCCCEEEEec
Q 008509 222 -SEFKDVDMVIEAV 234 (563)
Q Consensus 222 -~~l~~aDlVieav 234 (563)
+++.+||+||.++
T Consensus 69 ~~Al~gADfVi~~i 82 (425)
T cd05197 69 EDAIIDADFVINQF 82 (425)
T ss_pred HHHhCCCCEEEEee
Confidence 6999999999876
No 269
>PRK06141 ornithine cyclodeaminase; Validated
Probab=97.44 E-value=0.00037 Score=71.40 Aligned_cols=93 Identities=16% Similarity=0.127 Sum_probs=61.6
Q ss_pred ceeEEEEcCCcchHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCc-cc
Q 008509 147 VRKVAVIGGGLMGSGIATAHIL--NNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 223 (563)
Q Consensus 147 ~~kv~ViGaG~mG~~iA~~la~--~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 223 (563)
-++|+|||+|.||..++..+.. ...+|++|+|++++.+...+.+. +.|. .+....+. +.
T Consensus 125 ~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~-------~~g~-----------~~~~~~~~~~a 186 (314)
T PRK06141 125 ASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELR-------AQGF-----------DAEVVTDLEAA 186 (314)
T ss_pred CceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHH-------hcCC-----------ceEEeCCHHHH
Confidence 4689999999999999975554 45789999999998776543221 1110 13344454 47
Q ss_pred ccCCCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCC
Q 008509 224 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 263 (563)
Q Consensus 224 l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS 263 (563)
+.+||+||.|.+... .++.. +.++++++|...+|
T Consensus 187 v~~aDIVi~aT~s~~----pvl~~--~~l~~g~~i~~ig~ 220 (314)
T PRK06141 187 VRQADIISCATLSTE----PLVRG--EWLKPGTHLDLVGN 220 (314)
T ss_pred HhcCCEEEEeeCCCC----CEecH--HHcCCCCEEEeeCC
Confidence 789999998887652 22221 45677876654444
No 270
>PRK06487 glycerate dehydrogenase; Provisional
Probab=97.42 E-value=0.00073 Score=69.23 Aligned_cols=108 Identities=15% Similarity=0.160 Sum_probs=77.1
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCc-ccccC
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 226 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 226 (563)
++|+|||.|.+|..+|..+..-|.+|..||+.... .. . . ..++ +.++.
T Consensus 149 ktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~~~~-~~-----------------~------------~-~~~l~ell~~ 197 (317)
T PRK06487 149 KTLGLLGHGELGGAVARLAEAFGMRVLIGQLPGRP-AR-----------------P------------D-RLPLDELLPQ 197 (317)
T ss_pred CEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCCc-cc-----------------c------------c-ccCHHHHHHh
Confidence 68999999999999999999899999999986321 00 0 0 1134 45789
Q ss_pred CCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCCC---CCHHHHhhhccC-CCceeecccCC
Q 008509 227 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST---IDLNIVGEKTSS-QDRIIGAHFFS 287 (563)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS~---l~i~~la~~~~~-~~r~ig~hf~~ 287 (563)
||+|+.++|-+.+.+.-+=++..+.++++++|+ |+|- +.-..+.+++.. .-.-.++-.|.
T Consensus 198 sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lI-N~aRG~vVde~AL~~AL~~g~i~gAaLDVf~ 261 (317)
T PRK06487 198 VDALTLHCPLTEHTRHLIGARELALMKPGALLI-NTARGGLVDEQALADALRSGHLGGAATDVLS 261 (317)
T ss_pred CCEEEECCCCChHHhcCcCHHHHhcCCCCeEEE-ECCCccccCHHHHHHHHHcCCeeEEEeecCC
Confidence 999999999888876666667778899999886 4443 444567666652 33334555554
No 271
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=97.40 E-value=0.00096 Score=66.78 Aligned_cols=71 Identities=23% Similarity=0.170 Sum_probs=50.0
Q ss_pred cceeEEEEcCCcchHHHHHHHHhC--CCeEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCcc
Q 008509 146 GVRKVAVIGGGLMGSGIATAHILN--NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS 222 (563)
Q Consensus 146 ~~~kv~ViGaG~mG~~iA~~la~~--G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 222 (563)
...||+|||+|.||..++..+... +++|+ ++|+++++.+...+ +.|. ....++++
T Consensus 5 ~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~----------~~g~------------~~~~~~~e 62 (271)
T PRK13302 5 PELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIW----------GLRR------------PPPVVPLD 62 (271)
T ss_pred CeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHH----------hcCC------------CcccCCHH
Confidence 347899999999999999999863 78876 88999887554211 1110 11233443
Q ss_pred -cccCCCEEEEecCCCh
Q 008509 223 -EFKDVDMVIEAVIESV 238 (563)
Q Consensus 223 -~l~~aDlVieav~e~~ 238 (563)
.+.++|+|++|.|.+.
T Consensus 63 ell~~~D~Vvi~tp~~~ 79 (271)
T PRK13302 63 QLATHADIVVEAAPASV 79 (271)
T ss_pred HHhcCCCEEEECCCcHH
Confidence 4578999999999764
No 272
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=97.39 E-value=0.004 Score=62.39 Aligned_cols=196 Identities=15% Similarity=0.124 Sum_probs=120.5
Q ss_pred cceeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCcc---
Q 008509 146 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS--- 222 (563)
Q Consensus 146 ~~~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~--- 222 (563)
+...|+.||++.||..++...+.+|+.|.+|+|+.++++..+..-.+ |. .|.+..+++
T Consensus 5 ~~~digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~flaneak--------~~-----------~i~ga~S~ed~v 65 (487)
T KOG2653|consen 5 PKADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLANEAK--------GT-----------KIIGAYSLEDFV 65 (487)
T ss_pred cccchhhhhHhhhhhhhhhcccccCceEEEeccchHhHHHHHHHhhc--------CC-----------cccCCCCHHHHH
Confidence 35689999999999999999999999999999999998876532111 10 123333332
Q ss_pred -cccCCCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecC-CCC-CHH-HHhhhccCCCceeecccCC---CCCCCCeE
Q 008509 223 -EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNT-STI-DLN-IVGEKTSSQDRIIGAHFFS---PAHVMPLL 295 (563)
Q Consensus 223 -~l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~snt-S~l-~i~-~la~~~~~~~r~ig~hf~~---P~~~~~lv 295 (563)
-++.--.||..|..-.. ...++++|.+++.++.||++.. |.. ..+ ...+...+.--|+|+-... .++..|
T Consensus 66 ~klk~PR~iillvkAG~p-VD~~I~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEGAR~GP-- 142 (487)
T KOG2653|consen 66 SKLKKPRVIILLVKAGAP-VDQFIEELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEGARYGP-- 142 (487)
T ss_pred HhcCCCcEEEEEeeCCCc-HHHHHHHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCcccccccCC--
Confidence 24556667766643322 3467889999999988887643 222 222 2222223344577765532 111222
Q ss_pred EEEeCCCCCHHHHHHHHHHHHHhC-------CceEEecC-cchhhh----HHHH---HHHHHHHHHHHHC--CCCHHHHH
Q 008509 296 EIVRTERTSAQVILDLMTVGKIIK-------KVPVVVGN-CTGFAV----NRAF---FPYSQSARLLVSL--GVDVFRID 358 (563)
Q Consensus 296 Eiv~~~~t~~~~~~~~~~l~~~lG-------k~~v~~~d-~~Gfi~----nRl~---~~~~~Ea~~l~~~--G~~~~~ID 358 (563)
.++|| .++++-..++.++..+. ....++++ ..|-++ |-|- ..++.||..++.. |++-.+|-
T Consensus 143 SlMpG--g~~~Awp~ik~ifq~iaakv~~~epCc~wvG~~GaGhfVKMVHNGIEYGDMqLI~EaY~vlk~~~gls~~eia 220 (487)
T KOG2653|consen 143 SLMPG--GSKEAWPHIKDIFQKIAAKVSDGEPCCDWVGEGGAGHFVKMVHNGIEYGDMQLICEAYDVLKSVLGLSNDEIA 220 (487)
T ss_pred ccCCC--CChHHHHHHHHHHHHHHHHhcCCCCCeeeecCCCCccchhhhccCcccchHHHHHHHHHHHHHhcCCcHHHHH
Confidence 12334 56777777777765542 22344543 455444 3332 3578899998876 56889998
Q ss_pred HHHHhcC
Q 008509 359 SAIRSFG 365 (563)
Q Consensus 359 ~a~~~~G 365 (563)
.++..++
T Consensus 221 ~vF~~WN 227 (487)
T KOG2653|consen 221 EVFDDWN 227 (487)
T ss_pred HHHHhhc
Confidence 8874443
No 273
>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=97.39 E-value=0.00079 Score=70.78 Aligned_cols=126 Identities=15% Similarity=0.051 Sum_probs=81.9
Q ss_pred CccCCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCcc--chhcccc---------------------CCCC
Q 008509 1 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPW--IRSLHRT---------------------DKLG 57 (563)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~~~~~~~p~--~~~~~~~---------------------~~~~ 57 (563)
|+|||++++|++|+++||+|++||++++ +.+.+++.++...+ +. ....... -...
T Consensus 201 L~LTG~~i~a~eA~~~GLa~~~v~~~~l-~~l~~~l~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~I~~~F~~~ 278 (407)
T PLN02851 201 LALTGQKLNGVEMIACGLATHYCLNARL-PLIEERLGKLLTDD-PAVIEDSLAQYGDLVYPDKSSVLHKIETIDKCFGHD 278 (407)
T ss_pred HHHhCCcCCHHHHHHCCCceeecCHhhH-HHHHHHHHhhccCC-HHHHHHHHHHhccccCCCcccHHHHHHHHHHHhCCC
Confidence 5789999999999999999999999887 55666665443221 00 0000000 0000
Q ss_pred ChHHHHHHH---------HHHHHHHH-hhCCCChhHHHHHHHHHHhhccCchhhHHHHHHHHHHHh---cCHHHHHHHHH
Q 008509 58 SLSEAREVL---------KLARLQAK-KTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELV---MLDTSRGLVHV 124 (563)
Q Consensus 58 ~~~~~~~~~---------~~~~~~~~-~~~~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~---~s~~~~~~~~a 124 (563)
+..+....+ +-++...+ -..+.|.+...+.+.++.+..+++++.++.|.++-..++ .++|+.|||++
T Consensus 279 sv~~I~~~L~~~~~~~~~~wa~~~~~~l~~~SP~Sl~vt~~~~~~~~~~sl~e~l~~E~~l~~~~~~~~~~~DF~EGVRA 358 (407)
T PLN02851 279 TVEEIIEALENEAASSYDEWCKKALKKIKEASPLSLKVTLQSIREGRFQTLDQCLAREYRISLCGVSKWVSGDFCEGVRA 358 (407)
T ss_pred CHHHHHHHHHhcccccchHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCccchHHHHHHH
Confidence 111100000 11222222 234456678889999999999999999999999988887 48999999998
Q ss_pred Hhhh
Q 008509 125 FFAQ 128 (563)
Q Consensus 125 F~~k 128 (563)
-+=.
T Consensus 359 ~LID 362 (407)
T PLN02851 359 RLVD 362 (407)
T ss_pred HhcC
Confidence 7754
No 274
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=97.36 E-value=0.0012 Score=65.99 Aligned_cols=77 Identities=22% Similarity=0.257 Sum_probs=52.3
Q ss_pred eeEEEEcCCcchHHHHHHHHhC--CCe-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCcc-c
Q 008509 148 RKVAVIGGGLMGSGIATAHILN--NIY-VVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS-E 223 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~--G~~-V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~ 223 (563)
+||+|||+|.||..++..+.+. +++ +.++|+++++.+...+ ..+ ....++++ .
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~----------~~~-------------~~~~~~~~el 58 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLAS----------KTG-------------AKACLSIDEL 58 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHH----------hcC-------------CeeECCHHHH
Confidence 5899999999999999999876 466 5589999887654321 001 12345554 3
Q ss_pred ccCCCEEEEecCCChHHHHHHHHHHH
Q 008509 224 FKDVDMVIEAVIESVPLKQKIFSELE 249 (563)
Q Consensus 224 l~~aDlVieav~e~~~~k~~v~~~l~ 249 (563)
+.++|+|++|++.+. -.++..++.
T Consensus 59 l~~~DvVvi~a~~~~--~~~~~~~al 82 (265)
T PRK13304 59 VEDVDLVVECASVNA--VEEVVPKSL 82 (265)
T ss_pred hcCCCEEEEcCChHH--HHHHHHHHH
Confidence 488999999997543 334444443
No 275
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=97.35 E-value=0.00092 Score=63.75 Aligned_cols=39 Identities=23% Similarity=0.378 Sum_probs=35.6
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHHHHHHH
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKG 186 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 186 (563)
++|+|+|.|.||..+|+.|...|++|+++|+++++++..
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~ 67 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARA 67 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH
Confidence 579999999999999999999999999999998776553
No 276
>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]
Probab=97.35 E-value=0.00082 Score=64.90 Aligned_cols=77 Identities=25% Similarity=0.301 Sum_probs=57.7
Q ss_pred cceeEEEEcCCcchHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCccc
Q 008509 146 GVRKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE 223 (563)
Q Consensus 146 ~~~kv~ViGaG~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 223 (563)
...||.|+|+|..|.++|..++..|. +++++|.++++++...=.+ ++| ..--...++....||..
T Consensus 19 ~~~KItVVG~G~VGmAca~siL~k~Ladel~lvDv~~dklkGE~MDL--------qH~-----s~f~~~~~V~~~~Dy~~ 85 (332)
T KOG1495|consen 19 KHNKITVVGVGQVGMACAISILLKGLADELVLVDVNEDKLKGEMMDL--------QHG-----SAFLSTPNVVASKDYSV 85 (332)
T ss_pred cCceEEEEccchHHHHHHHHHHHhhhhhceEEEecCcchhhhhhhhh--------ccc-----cccccCCceEecCcccc
Confidence 36799999999999999999999986 8999999998766532111 111 11112246777889999
Q ss_pred ccCCCEEEEecC
Q 008509 224 FKDVDMVIEAVI 235 (563)
Q Consensus 224 l~~aDlVieav~ 235 (563)
-+++++||...-
T Consensus 86 sa~S~lvIiTAG 97 (332)
T KOG1495|consen 86 SANSKLVIITAG 97 (332)
T ss_pred cCCCcEEEEecC
Confidence 999999998763
No 277
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=97.33 E-value=0.0012 Score=69.46 Aligned_cols=86 Identities=19% Similarity=0.186 Sum_probs=61.5
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCcccccCC
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 227 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 227 (563)
++|+|+|+|.+|..+|..+...|.+|+++|+++.+++.+. ..|. ......+.+.++
T Consensus 203 ktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~-----------~~G~-------------~~~~~~e~v~~a 258 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAA-----------MEGY-------------EVMTMEEAVKEG 258 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHH-----------hcCC-------------EEccHHHHHcCC
Confidence 5899999999999999999999999999999998766543 1231 001111456789
Q ss_pred CEEEEecCCChHHHHHHHH-HHHhhCCCCeEEEecC
Q 008509 228 DMVIEAVIESVPLKQKIFS-ELEKACPPHCILATNT 262 (563)
Q Consensus 228 DlVieav~e~~~~k~~v~~-~l~~~~~~~~ii~snt 262 (563)
|+||+|.... .++. .....++++.+++..+
T Consensus 259 DVVI~atG~~-----~~i~~~~l~~mk~GgilvnvG 289 (413)
T cd00401 259 DIFVTTTGNK-----DIITGEHFEQMKDGAIVCNIG 289 (413)
T ss_pred CEEEECCCCH-----HHHHHHHHhcCCCCcEEEEeC
Confidence 9999997643 2333 3455678888776543
No 278
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=97.33 E-value=0.00068 Score=70.61 Aligned_cols=110 Identities=15% Similarity=0.112 Sum_probs=72.2
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCcc-cccC
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS-EFKD 226 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~l~~ 226 (563)
++|||||.|.||+.+|..+...|.+|.+||+.... . +. .. ...+++ .++.
T Consensus 117 ktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~~~~--~---------------~~-----------~~-~~~~L~ell~~ 167 (378)
T PRK15438 117 RTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRAD--R---------------GD-----------EG-DFRSLDELVQE 167 (378)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCcccc--c---------------cc-----------cc-ccCCHHHHHhh
Confidence 68999999999999999999999999999974221 0 00 00 112443 5689
Q ss_pred CCEEEEecCCChH----HHHHHHHHHHhhCCCCeEEEecCCC---CCHHHHhhhcc-CCCceeecccCC
Q 008509 227 VDMVIEAVIESVP----LKQKIFSELEKACPPHCILATNTST---IDLNIVGEKTS-SQDRIIGAHFFS 287 (563)
Q Consensus 227 aDlVieav~e~~~----~k~~v~~~l~~~~~~~~ii~sntS~---l~i~~la~~~~-~~~r~ig~hf~~ 287 (563)
||+|+..+|-..+ ...-+=++..+.++++++++ |+|- +.-..+.+.+. .+..-.++-.|.
T Consensus 168 sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk~gailI-N~aRG~vVDe~AL~~aL~~g~~~ga~LDV~e 235 (378)
T PRK15438 168 ADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILI-NACRGAVVDNTALLTCLNEGQKLSVVLDVWE 235 (378)
T ss_pred CCEEEEeCCCCCCcccccccccCHHHHhcCCCCcEEE-ECCCchhcCHHHHHHHHHhCCCcEEEEecCC
Confidence 9999999986543 22222245666789999886 4553 34445666654 233445555554
No 279
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=97.32 E-value=0.0013 Score=69.91 Aligned_cols=75 Identities=20% Similarity=0.237 Sum_probs=49.5
Q ss_pred eeEEEEcCCcchH-HHHHHHHhC-----CCeEEEEeCC-HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecC
Q 008509 148 RKVAVIGGGLMGS-GIATAHILN-----NIYVVLKEVN-SEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD 220 (563)
Q Consensus 148 ~kv~ViGaG~mG~-~iA~~la~~-----G~~V~l~d~~-~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~ 220 (563)
+||+|||+|..-+ .+...++.. +-+|+++|+| +++++....-++ +..+....+ -++..|+|
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~~~----~~~~~~~~~--------~~v~~t~d 68 (419)
T cd05296 1 MKLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAK----RMVKKAGLP--------IKVHLTTD 68 (419)
T ss_pred CEEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHHHH----HHHHhhCCC--------eEEEEeCC
Confidence 4899999987533 445555542 4589999999 788765332222 223321111 14777888
Q ss_pred c-ccccCCCEEEEec
Q 008509 221 Y-SEFKDVDMVIEAV 234 (563)
Q Consensus 221 ~-~~l~~aDlVieav 234 (563)
. +++.+||+||.++
T Consensus 69 ~~~al~gadfVi~~~ 83 (419)
T cd05296 69 RREALEGADFVFTQI 83 (419)
T ss_pred HHHHhCCCCEEEEEE
Confidence 8 6899999999876
No 280
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=97.32 E-value=0.00036 Score=67.15 Aligned_cols=104 Identities=21% Similarity=0.252 Sum_probs=60.6
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCC-eEEEEeCC---HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhc----Ceee--
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVN---SEYLLKGIKTIEANVRGLVTRGKLTQDKANNALK----MLKG-- 217 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~-~V~l~d~~---~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~----~i~~-- 217 (563)
.+|.|||+|.+|+.+|..|++.|+ +++++|.+ .+.+.+-. . +.. .-|.-..+.+...+. .+..
T Consensus 29 ~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~--~---~~~--dvG~~Ka~~a~~~l~~lnp~v~v~~ 101 (212)
T PRK08644 29 AKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQ--Y---FIS--QIGMPKVEALKENLLEINPFVEIEA 101 (212)
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccE--e---ehh--hCCChHHHHHHHHHHHHCCCCEEEE
Confidence 579999999999999999999998 59999998 33332210 0 000 011111111111111 1111
Q ss_pred ec------Cc-ccccCCCEEEEecCCChHHHHHHHHHHHhhCCCCeEEE
Q 008509 218 VL------DY-SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA 259 (563)
Q Consensus 218 ~~------~~-~~l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~ 259 (563)
.. +. +.++++|+||+|+ ++.+.+..+............|.+
T Consensus 102 ~~~~i~~~~~~~~~~~~DvVI~a~-D~~~~r~~l~~~~~~~~~~p~I~~ 149 (212)
T PRK08644 102 HNEKIDEDNIEELFKDCDIVVEAF-DNAETKAMLVETVLEHPGKKLVAA 149 (212)
T ss_pred EeeecCHHHHHHHHcCCCEEEECC-CCHHHHHHHHHHHHHhCCCCEEEe
Confidence 10 11 3467899999994 677777777766665533334444
No 281
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=97.32 E-value=0.00035 Score=69.98 Aligned_cols=104 Identities=12% Similarity=0.148 Sum_probs=62.8
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeee-ecCcccccC
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-VLDYSEFKD 226 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~l~~ 226 (563)
++|.|+|+|.+|.+++..++..|++|++++|++++++...+.+. ..+. +.. ..+...+.+
T Consensus 118 k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~-------~~~~------------~~~~~~~~~~~~~ 178 (270)
T TIGR00507 118 QRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAERFQ-------RYGE------------IQAFSMDELPLHR 178 (270)
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHh-------hcCc------------eEEechhhhcccC
Confidence 57999999999999999999999999999999887665432221 1111 111 111123457
Q ss_pred CCEEEEecCCChH--HHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhh
Q 008509 227 VDMVIEAVIESVP--LKQKIFSELEKACPPHCILATNTSTIDLNIVGE 272 (563)
Q Consensus 227 aDlVieav~e~~~--~k~~v~~~l~~~~~~~~ii~sntS~l~i~~la~ 272 (563)
+|+||.|+|..+. +....+ ....++++.++.+.....+.+.+.+
T Consensus 179 ~DivInatp~gm~~~~~~~~~--~~~~l~~~~~v~D~~y~p~~T~ll~ 224 (270)
T TIGR00507 179 VDLIINATSAGMSGNIDEPPV--PAEKLKEGMVVYDMVYNPGETPFLA 224 (270)
T ss_pred ccEEEECCCCCCCCCCCCCCC--CHHHcCCCCEEEEeccCCCCCHHHH
Confidence 9999999986431 100001 0233566666665443333334433
No 282
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=97.30 E-value=0.00038 Score=72.26 Aligned_cols=92 Identities=27% Similarity=0.276 Sum_probs=62.5
Q ss_pred ceeEEEEcCCcchHHHHHHHHhCC-CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCc----
Q 008509 147 VRKVAVIGGGLMGSGIATAHILNN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY---- 221 (563)
Q Consensus 147 ~~kv~ViGaG~mG~~iA~~la~~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~---- 221 (563)
+++|.|||+|.+|+.+|..|+++| .+|++.||+.++++++..... +++...+ +. ..+.
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~---------~~v~~~~-------vD-~~d~~al~ 63 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG---------GKVEALQ-------VD-AADVDALV 63 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc---------ccceeEE-------ec-ccChHHHH
Confidence 468999999999999999999999 999999999999887643211 1111100 00 1111
Q ss_pred ccccCCCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEe
Q 008509 222 SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILAT 260 (563)
Q Consensus 222 ~~l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s 260 (563)
+.+++.|+||.|+|..... .+ ++..++.++-.++
T Consensus 64 ~li~~~d~VIn~~p~~~~~--~i---~ka~i~~gv~yvD 97 (389)
T COG1748 64 ALIKDFDLVINAAPPFVDL--TI---LKACIKTGVDYVD 97 (389)
T ss_pred HHHhcCCEEEEeCCchhhH--HH---HHHHHHhCCCEEE
Confidence 4678889999999977654 22 2334445555544
No 283
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=97.29 E-value=0.0026 Score=61.83 Aligned_cols=94 Identities=19% Similarity=0.241 Sum_probs=63.1
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeee-ecCc-----
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-VLDY----- 221 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~----- 221 (563)
+++.|||+|.+|..+|..|...|++|+++|.+++.+++..+. .+.. .-+.+ .++.
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~---~~~~----------------~~v~gd~t~~~~L~~ 61 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLAD---ELDT----------------HVVIGDATDEDVLEE 61 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhh---hcce----------------EEEEecCCCHHHHHh
Confidence 479999999999999999999999999999999987763210 0000 00111 1222
Q ss_pred ccccCCCEEEEecCCChHHHHHHHHHHHhh-CCCCeEEEecC
Q 008509 222 SEFKDVDMVIEAVIESVPLKQKIFSELEKA-CPPHCILATNT 262 (563)
Q Consensus 222 ~~l~~aDlVieav~e~~~~k~~v~~~l~~~-~~~~~ii~snt 262 (563)
..+.++|.+|-++..+. ...++..+... +....+++-..
T Consensus 62 agi~~aD~vva~t~~d~--~N~i~~~la~~~~gv~~viar~~ 101 (225)
T COG0569 62 AGIDDADAVVAATGNDE--VNSVLALLALKEFGVPRVIARAR 101 (225)
T ss_pred cCCCcCCEEEEeeCCCH--HHHHHHHHHHHhcCCCcEEEEec
Confidence 23689999999988764 34555555533 55556665433
No 284
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.27 E-value=0.00065 Score=68.24 Aligned_cols=70 Identities=20% Similarity=0.245 Sum_probs=54.3
Q ss_pred eeEEEEc-CCcchHHHHHHHHhCCCeEEEEe-CCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCccccc
Q 008509 148 RKVAVIG-GGLMGSGIATAHILNNIYVVLKE-VNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 225 (563)
Q Consensus 148 ~kv~ViG-aG~mG~~iA~~la~~G~~V~l~d-~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 225 (563)
++|+||| .|.||..||..|.++|++|++|+ ++.+ ++ +.++
T Consensus 159 k~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~~-l~-------------------------------------e~~~ 200 (296)
T PRK14188 159 LNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTRD-LP-------------------------------------AVCR 200 (296)
T ss_pred CEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCCC-HH-------------------------------------HHHh
Confidence 6899999 89999999999999999999995 5542 10 2356
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecC
Q 008509 226 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNT 262 (563)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~snt 262 (563)
.||+||.|++....++.. .+++++++++.+
T Consensus 201 ~ADIVIsavg~~~~v~~~-------~lk~GavVIDvG 230 (296)
T PRK14188 201 RADILVAAVGRPEMVKGD-------WIKPGATVIDVG 230 (296)
T ss_pred cCCEEEEecCChhhcchh-------eecCCCEEEEcC
Confidence 899999999876443322 278899887654
No 285
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=97.21 E-value=0.0016 Score=66.65 Aligned_cols=92 Identities=21% Similarity=0.125 Sum_probs=58.3
Q ss_pred ceeEEEEcCCcchHHHHHHHHhCC-CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCc-ccc
Q 008509 147 VRKVAVIGGGLMGSGIATAHILNN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 224 (563)
Q Consensus 147 ~~kv~ViGaG~mG~~iA~~la~~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 224 (563)
-++|+|||+|.||..++..+...| .+|+++|+++++.+...+. -|. ......++ +.+
T Consensus 178 ~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~----------~g~-----------~~~~~~~~~~~l 236 (311)
T cd05213 178 GKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKE----------LGG-----------NAVPLDELLELL 236 (311)
T ss_pred CCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHH----------cCC-----------eEEeHHHHHHHH
Confidence 368999999999999999998865 6899999998876543211 111 01111122 456
Q ss_pred cCCCEEEEecCCChHHHHHHHHHHHhhC-CCCeEEEec
Q 008509 225 KDVDMVIEAVIESVPLKQKIFSELEKAC-PPHCILATN 261 (563)
Q Consensus 225 ~~aDlVieav~e~~~~k~~v~~~l~~~~-~~~~ii~sn 261 (563)
.++|+||.|++.... ..++..+.+.. ..+.++++.
T Consensus 237 ~~aDvVi~at~~~~~--~~~~~~~~~~~~~~~~~viDl 272 (311)
T cd05213 237 NEADVVISATGAPHY--AKIVERAMKKRSGKPRLIVDL 272 (311)
T ss_pred hcCCEEEECCCCCch--HHHHHHHHhhCCCCCeEEEEe
Confidence 789999999986543 33334332222 234555543
No 286
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=97.18 E-value=0.0027 Score=64.90 Aligned_cols=113 Identities=17% Similarity=0.097 Sum_probs=78.9
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCcccccCC
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 227 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 227 (563)
++++|||.|.+|..+|..+.--|.+|..||+++.. +. . +.+ ......-.+.++.|
T Consensus 147 ktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~~-~~-~-----------~~~------------~~~y~~l~ell~~s 201 (324)
T COG1052 147 KTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPNP-EA-E-----------KEL------------GARYVDLDELLAES 201 (324)
T ss_pred CEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCCh-HH-H-----------hhc------------CceeccHHHHHHhC
Confidence 68999999999999999999779999999998641 11 0 000 12222312578999
Q ss_pred CEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCCC---CCHHHHhhhccC-CCceeecccC
Q 008509 228 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST---IDLNIVGEKTSS-QDRIIGAHFF 286 (563)
Q Consensus 228 DlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS~---l~i~~la~~~~~-~~r~ig~hf~ 286 (563)
|+|+..+|-..+..+-+=++..+.++++++|+ ||+- +.-..+.+++.. .-.-.|+.-|
T Consensus 202 Dii~l~~Plt~~T~hLin~~~l~~mk~ga~lV-NtaRG~~VDe~ALi~AL~~g~i~gaglDV~ 263 (324)
T COG1052 202 DIISLHCPLTPETRHLINAEELAKMKPGAILV-NTARGGLVDEQALIDALKSGKIAGAGLDVF 263 (324)
T ss_pred CEEEEeCCCChHHhhhcCHHHHHhCCCCeEEE-ECCCccccCHHHHHHHHHhCCcceEEeeec
Confidence 99999999998877777677888899999875 5654 344456666542 3333444443
No 287
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=97.17 E-value=0.0018 Score=66.56 Aligned_cols=94 Identities=9% Similarity=-0.018 Sum_probs=62.9
Q ss_pred ceeEEEEcCCcchHHHHHHHH--hCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCc-cc
Q 008509 147 VRKVAVIGGGLMGSGIATAHI--LNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 223 (563)
Q Consensus 147 ~~kv~ViGaG~mG~~iA~~la--~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 223 (563)
.++++|||+|.||...+..+. ....+|.+||+++++.+...+.+. +.|. .+....+. ++
T Consensus 128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~-------~~g~-----------~v~~~~~~~ea 189 (325)
T TIGR02371 128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRAS-------DYEV-----------PVRAATDPREA 189 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHH-------hhCC-----------cEEEeCCHHHH
Confidence 468999999999999666554 345689999999999776543321 1121 13344555 57
Q ss_pred ccCCCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCCC
Q 008509 224 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 264 (563)
Q Consensus 224 l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS~ 264 (563)
+++||+||.|+|... .++. .+.+++++.|.+..|.
T Consensus 190 v~~aDiVitaT~s~~----P~~~--~~~l~~g~~v~~vGs~ 224 (325)
T TIGR02371 190 VEGCDILVTTTPSRK----PVVK--ADWVSEGTHINAIGAD 224 (325)
T ss_pred hccCCEEEEecCCCC----cEec--HHHcCCCCEEEecCCC
Confidence 899999999998653 2221 2346788877655543
No 288
>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=97.16 E-value=0.0083 Score=60.20 Aligned_cols=157 Identities=16% Similarity=0.117 Sum_probs=87.2
Q ss_pred eeEEEEcCCcchHHHHHHHHh-CCCeEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCcccc-
Q 008509 148 RKVAVIGGGLMGSGIATAHIL-NNIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF- 224 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~-~G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l- 224 (563)
-||++||+|-||++|+...++ .|++|+ +-|++.+...++..+.-..-...++....+.-...-....+..|.|.+.+
T Consensus 18 iRVGlIGAG~mG~~ivtQi~~m~Gm~vvaisd~~~~~ak~A~~~ag~~~~~~~e~~~~s~~a~Ai~aGKi~vT~D~~~i~ 97 (438)
T COG4091 18 IRVGLIGAGEMGTGIVTQIASMPGMEVVAISDRNLDAAKRAYDRAGGPKIEAVEADDASKMADAIEAGKIAVTDDAELII 97 (438)
T ss_pred eEEEEecccccchHHHHHHhhcCCceEEEEecccchHHHHHHHHhcCCcccccccchhhHHHHHHhcCcEEEecchhhhh
Confidence 479999999999999987764 599876 55888887776654321000000111101111111112346667776543
Q ss_pred --cCCCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCC-----CCCHHHHhhhccCCCceeecccCCCCCCCCeEEE
Q 008509 225 --KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS-----TIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEI 297 (563)
Q Consensus 225 --~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS-----~l~i~~la~~~~~~~r~ig~hf~~P~~~~~lvEi 297 (563)
...|+||++.--..---+-. ++.......++.-|.- +.-+.+.+... |+ .+
T Consensus 98 ~~~~IdvIIdATG~p~vGA~~~---l~Ai~h~KHlVMmNVEaDvtIGp~Lk~~Ad~~-------Gv------------iy 155 (438)
T COG4091 98 ANDLIDVIIDATGVPEVGAKIA---LEAILHGKHLVMMNVEADVTIGPILKQQADAA-------GV------------IY 155 (438)
T ss_pred cCCcceEEEEcCCCcchhhHhH---HHHHhcCCeEEEEEeeeceeecHHHHHHHhhc-------Ce------------EE
Confidence 45688999864222111122 3344445556655532 22222333221 32 22
Q ss_pred EeCCCCCHHHHHHHHHHHHHhCCceEEec
Q 008509 298 VRTERTSAQVILDLMTVGKIIKKVPVVVG 326 (563)
Q Consensus 298 v~~~~t~~~~~~~~~~l~~~lGk~~v~~~ 326 (563)
..+....|...-.+.+|.+.+|..++.++
T Consensus 156 S~~~GDeP~~~mEL~efa~a~G~evv~aG 184 (438)
T COG4091 156 SGGAGDEPSSCMELYEFASALGFEVVSAG 184 (438)
T ss_pred eccCCCCcHHHHHHHHHHHhcCCeEEecc
Confidence 33444567788889999999999999884
No 289
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=97.14 E-value=0.0016 Score=68.75 Aligned_cols=86 Identities=22% Similarity=0.201 Sum_probs=61.7
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCc-ccccC
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 226 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 226 (563)
++|+|+|.|.+|.++|..+...|.+|+++|+++.+...+. ..|. .. .++ +.+++
T Consensus 213 k~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~-----------~~G~-------------~v-~~l~eal~~ 267 (425)
T PRK05476 213 KVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAA-----------MDGF-------------RV-MTMEEAAEL 267 (425)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHH-----------hcCC-------------Ee-cCHHHHHhC
Confidence 5799999999999999999999999999999987654321 1121 11 122 45678
Q ss_pred CCEEEEecCCChHHHHHHHH-HHHhhCCCCeEEEecCC
Q 008509 227 VDMVIEAVIESVPLKQKIFS-ELEKACPPHCILATNTS 263 (563)
Q Consensus 227 aDlVieav~e~~~~k~~v~~-~l~~~~~~~~ii~sntS 263 (563)
+|+||+|+... .++. +....++++++++...+
T Consensus 268 aDVVI~aTG~~-----~vI~~~~~~~mK~GailiNvG~ 300 (425)
T PRK05476 268 GDIFVTATGNK-----DVITAEHMEAMKDGAILANIGH 300 (425)
T ss_pred CCEEEECCCCH-----HHHHHHHHhcCCCCCEEEEcCC
Confidence 99999987432 3343 56667889998876544
No 290
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=97.14 E-value=0.0018 Score=68.00 Aligned_cols=97 Identities=24% Similarity=0.195 Sum_probs=66.1
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCcccccCC
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 227 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 227 (563)
++|+|+|.|.+|.++|+.+...|.+|+++|+++.+...+. ..|. ...+..+.++++
T Consensus 196 k~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~-----------~~G~-------------~v~~leeal~~a 251 (406)
T TIGR00936 196 KTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAA-----------MDGF-------------RVMTMEEAAKIG 251 (406)
T ss_pred CEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHH-----------hcCC-------------EeCCHHHHHhcC
Confidence 5899999999999999999999999999999987643321 1121 111111456789
Q ss_pred CEEEEecCCChHHHHHHHH-HHHhhCCCCeEEEecCCC---CCHHHHhhh
Q 008509 228 DMVIEAVIESVPLKQKIFS-ELEKACPPHCILATNTST---IDLNIVGEK 273 (563)
Q Consensus 228 DlVieav~e~~~~k~~v~~-~l~~~~~~~~ii~sntS~---l~i~~la~~ 273 (563)
|+||++.... .++. +....++++++++..+.. +....+.+.
T Consensus 252 DVVItaTG~~-----~vI~~~~~~~mK~GailiN~G~~~~eId~~aL~~~ 296 (406)
T TIGR00936 252 DIFITATGNK-----DVIRGEHFENMKDGAIVANIGHFDVEIDVKALEEL 296 (406)
T ss_pred CEEEECCCCH-----HHHHHHHHhcCCCCcEEEEECCCCceeCHHHHHHH
Confidence 9999987532 3333 356678899988754432 445555543
No 291
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=97.10 E-value=0.0043 Score=59.22 Aligned_cols=126 Identities=20% Similarity=0.265 Sum_probs=77.6
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeec---Cccc
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE-YLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL---DYSE 223 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~-~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~---~~~~ 223 (563)
++|.|||+|.||...+..|...|.+|++++++.. .+.. +...+. +.... ..+.
T Consensus 11 k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~-----------l~~~~~------------i~~~~~~~~~~~ 67 (202)
T PRK06718 11 KRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVK-----------LVEEGK------------IRWKQKEFEPSD 67 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHH-----------HHhCCC------------EEEEecCCChhh
Confidence 6899999999999999999999999999987532 1111 122222 22211 1256
Q ss_pred ccCCCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhhhccCCCceeecccCCCC--CCCCeEEEEeCC
Q 008509 224 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPA--HVMPLLEIVRTE 301 (563)
Q Consensus 224 l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS~l~i~~la~~~~~~~r~ig~hf~~P~--~~~~lvEiv~~~ 301 (563)
+.++|+||-|.. +.++...+... +..+. ++.+.. .|+. ..|+.|. ...++.--+.+.
T Consensus 68 l~~adlViaaT~-d~elN~~i~~~----a~~~~-lvn~~d------------~~~~---~~f~~Pa~~~~g~l~iaIsT~ 126 (202)
T PRK06718 68 IVDAFLVIAATN-DPRVNEQVKED----LPENA-LFNVIT------------DAES---GNVVFPSALHRGKLTISVSTD 126 (202)
T ss_pred cCCceEEEEcCC-CHHHHHHHHHH----HHhCC-cEEECC------------CCcc---CeEEEeeEEEcCCeEEEEECC
Confidence 889999998764 55555555433 33333 333322 1221 2355554 455666677777
Q ss_pred CCCHHHHHHHHHHHHH
Q 008509 302 RTSAQVILDLMTVGKI 317 (563)
Q Consensus 302 ~t~~~~~~~~~~l~~~ 317 (563)
..+|.....+++-++.
T Consensus 127 G~sP~la~~lr~~ie~ 142 (202)
T PRK06718 127 GASPKLAKKIRDELEA 142 (202)
T ss_pred CCChHHHHHHHHHHHH
Confidence 7788777666665554
No 292
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=97.09 E-value=0.0017 Score=65.43 Aligned_cols=74 Identities=15% Similarity=0.188 Sum_probs=51.5
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCc-cccc
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 225 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 225 (563)
++|.|||+|.+|++++..|+..|. +|+++||+.++++...+.+.... .. ..+....+. +.+.
T Consensus 128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~------~~----------~~~~~~~~~~~~~~ 191 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARF------PA----------ARATAGSDLAAALA 191 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhC------CC----------eEEEeccchHhhhC
Confidence 689999999999999999999998 79999999988766433221110 00 011112222 3567
Q ss_pred CCCEEEEecCCC
Q 008509 226 DVDMVIEAVIES 237 (563)
Q Consensus 226 ~aDlVieav~e~ 237 (563)
++|+||.|+|-.
T Consensus 192 ~aDiVInaTp~G 203 (284)
T PRK12549 192 AADGLVHATPTG 203 (284)
T ss_pred CCCEEEECCcCC
Confidence 899999998754
No 293
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=97.06 E-value=0.0076 Score=60.92 Aligned_cols=104 Identities=13% Similarity=0.001 Sum_probs=66.3
Q ss_pred cchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHhhhcCeeeecCcccccCCCEEEEecC
Q 008509 157 LMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGK-LTQDKANNALKMLKGVLDYSEFKDVDMVIEAVI 235 (563)
Q Consensus 157 ~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~-~~~~~~~~~~~~i~~~~~~~~l~~aDlVieav~ 235 (563)
.||+.+|..|+++|++|++++|+ +..+... +.|. +.....+.....+..+++.+.+.++|+||.|++
T Consensus 1 aiG~~~a~~L~~~G~~V~l~~r~-~~~~~i~-----------~~Gl~i~~~~~~~~~~~~~~~~~~~~~~~~D~iiv~vK 68 (293)
T TIGR00745 1 AVGSLYGAYLARAGHDVTLLARG-EQLEALN-----------QEGLRIVSLGGEFQFRPVSAATSPEELPPADLVIITVK 68 (293)
T ss_pred CchHHHHHHHHhCCCcEEEEecH-HHHHHHH-----------HCCcEEEecCCcEEEcccccccChhhcCCCCEEEEecc
Confidence 37999999999999999999997 4444321 1221 000000000002233455566789999999998
Q ss_pred CChHHHHHHHHHHHhhCCCCeEEEecCCCCCHH-HHhhhc
Q 008509 236 ESVPLKQKIFSELEKACPPHCILATNTSTIDLN-IVGEKT 274 (563)
Q Consensus 236 e~~~~k~~v~~~l~~~~~~~~ii~sntS~l~i~-~la~~~ 274 (563)
.. + -.++++.+.+++.++++|++..-++... .+...+
T Consensus 69 s~-~-~~~~l~~l~~~l~~~~~iv~~qNG~g~~~~l~~~~ 106 (293)
T TIGR00745 69 AY-Q-TEEAAALLLPLIGKNTKVLFLQNGLGHEERLRELL 106 (293)
T ss_pred ch-h-HHHHHHHhHhhcCCCCEEEEccCCCCCHHHHHHHh
Confidence 65 2 3577888999999988887766666443 455444
No 294
>PRK05086 malate dehydrogenase; Provisional
Probab=97.05 E-value=0.0017 Score=66.30 Aligned_cols=94 Identities=20% Similarity=0.320 Sum_probs=57.7
Q ss_pred eeEEEEcC-CcchHHHHHHHHh---CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeee--ecC-
Q 008509 148 RKVAVIGG-GLMGSGIATAHIL---NNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG--VLD- 220 (563)
Q Consensus 148 ~kv~ViGa-G~mG~~iA~~la~---~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~--~~~- 220 (563)
+||+|||+ |.+|..++..+.. .+++++++|+++.. .+. .++ .... .....+.. .++
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~--~g~-----alD--l~~~--------~~~~~i~~~~~~d~ 63 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVT--PGV-----AVD--LSHI--------PTAVKIKGFSGEDP 63 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCC--cce-----ehh--hhcC--------CCCceEEEeCCCCH
Confidence 58999999 9999999998855 35699999998542 110 000 0000 00012333 345
Q ss_pred cccccCCCEEEEecCC--------------ChHHHHHHHHHHHhhCCCCeEEE
Q 008509 221 YSEFKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILA 259 (563)
Q Consensus 221 ~~~l~~aDlVieav~e--------------~~~~k~~v~~~l~~~~~~~~ii~ 259 (563)
++++++||+||.|.-. |..+.+++...+.++. ++++++
T Consensus 64 ~~~l~~~DiVIitaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~~-~~~ivi 115 (312)
T PRK05086 64 TPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTC-PKACIG 115 (312)
T ss_pred HHHcCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEE
Confidence 5889999999998743 2224455666677764 445443
No 295
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=97.03 E-value=0.005 Score=65.66 Aligned_cols=75 Identities=23% Similarity=0.251 Sum_probs=50.4
Q ss_pred eeEEEEcCCcc-hHHHHHHHHhC-----CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCc
Q 008509 148 RKVAVIGGGLM-GSGIATAHILN-----NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY 221 (563)
Q Consensus 148 ~kv~ViGaG~m-G~~iA~~la~~-----G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 221 (563)
+||+|||+|.. +..+...++.. +-+|+++|+|+++++... ...++..++...+ -++..|+|.
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~----~l~~~~~~~~g~~--------~~v~~Ttdr 68 (437)
T cd05298 1 FKIVIAGGGSTYTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVA----EAVKILFKENYPE--------IKFVYTTDP 68 (437)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHH----HHHHHHHHhhCCC--------eEEEEECCH
Confidence 58999999874 22444555433 468999999999987733 3333333321111 157788888
Q ss_pred -ccccCCCEEEEec
Q 008509 222 -SEFKDVDMVIEAV 234 (563)
Q Consensus 222 -~~l~~aDlVieav 234 (563)
+++++||+||.++
T Consensus 69 ~eAl~gADfVi~~i 82 (437)
T cd05298 69 EEAFTDADFVFAQI 82 (437)
T ss_pred HHHhCCCCEEEEEe
Confidence 6999999999876
No 296
>PRK08618 ornithine cyclodeaminase; Validated
Probab=97.01 E-value=0.0035 Score=64.52 Aligned_cols=94 Identities=15% Similarity=0.156 Sum_probs=64.1
Q ss_pred ceeEEEEcCCcchHHHHHHHHh-CCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCc-cc
Q 008509 147 VRKVAVIGGGLMGSGIATAHIL-NNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 223 (563)
Q Consensus 147 ~~kv~ViGaG~mG~~iA~~la~-~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 223 (563)
.++|+|||+|.+|...+..++. .++ +|.+|++++++.++..+.+...+ + + .+....++ +.
T Consensus 127 ~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~------~-~----------~~~~~~~~~~~ 189 (325)
T PRK08618 127 AKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKF------N-T----------EIYVVNSADEA 189 (325)
T ss_pred CcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhc------C-C----------cEEEeCCHHHH
Confidence 3679999999999988877653 454 89999999998776544332111 1 0 13334554 46
Q ss_pred ccCCCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCCC
Q 008509 224 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 264 (563)
Q Consensus 224 l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS~ 264 (563)
+.++|+||.|.|... .++. ..+++++.|.+..|.
T Consensus 190 ~~~aDiVi~aT~s~~----p~i~---~~l~~G~hV~~iGs~ 223 (325)
T PRK08618 190 IEEADIIVTVTNAKT----PVFS---EKLKKGVHINAVGSF 223 (325)
T ss_pred HhcCCEEEEccCCCC----cchH---HhcCCCcEEEecCCC
Confidence 789999999998652 3443 456888877666554
No 297
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=96.99 E-value=0.00048 Score=75.09 Aligned_cols=43 Identities=16% Similarity=0.235 Sum_probs=40.3
Q ss_pred CccCCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccC
Q 008509 1 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARR 43 (563)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~~~~~~ 43 (563)
|+|||++++|+||++|||||+|||++++++.+.++|++++..+
T Consensus 188 llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~lA~~la~~~ 230 (546)
T TIGR03222 188 FCTIEEGVRGKRAKEWRLVDEVVKPSQFDAAIAERAAELAAQS 230 (546)
T ss_pred HHHcCCCccHHHHHHcCCceEEeChHHHHHHHHHHHHHHHhCC
Confidence 4689999999999999999999999999999999999998864
No 298
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=96.97 E-value=0.0034 Score=54.93 Aligned_cols=103 Identities=17% Similarity=0.150 Sum_probs=59.1
Q ss_pred eeEEEEcC-CcchHHHHHHHHh-CCCeE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCcc-c
Q 008509 148 RKVAVIGG-GLMGSGIATAHIL-NNIYV-VLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS-E 223 (563)
Q Consensus 148 ~kv~ViGa-G~mG~~iA~~la~-~G~~V-~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~ 223 (563)
.||+|+|+ |.||+.|+..+.. .|+++ -.+|++++.... +.+- .....+ ...+..+++++ .
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g--~d~g----~~~~~~----------~~~~~v~~~l~~~ 64 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVG--KDVG----ELAGIG----------PLGVPVTDDLEEL 64 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTT--SBCH----HHCTSS----------T-SSBEBS-HHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCccccc--chhh----hhhCcC----------CcccccchhHHHh
Confidence 48999999 9999999999998 68884 467887621110 0000 000000 11234456664 5
Q ss_pred ccCCCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHh
Q 008509 224 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVG 271 (563)
Q Consensus 224 l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS~l~i~~la 271 (563)
+..+|+||+.. .++.-.+.++ ..+..+..+++.|+++.-.++.
T Consensus 65 ~~~~DVvIDfT--~p~~~~~~~~---~~~~~g~~~ViGTTG~~~~~~~ 107 (124)
T PF01113_consen 65 LEEADVVIDFT--NPDAVYDNLE---YALKHGVPLVIGTTGFSDEQID 107 (124)
T ss_dssp TTH-SEEEEES---HHHHHHHHH---HHHHHT-EEEEE-SSSHHHHHH
T ss_pred cccCCEEEEcC--ChHHhHHHHH---HHHhCCCCEEEECCCCCHHHHH
Confidence 67799999987 3433333333 3344477788888888765544
No 299
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.97 E-value=0.0015 Score=65.07 Aligned_cols=70 Identities=14% Similarity=0.225 Sum_probs=54.3
Q ss_pred eeEEEEcC-CcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCc-cccc
Q 008509 148 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 225 (563)
Q Consensus 148 ~kv~ViGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 225 (563)
++|+|||. |.||..||..|.++|+.|++|..... ++ +.++
T Consensus 159 k~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~t~--------------------------------------~l~~~~~ 200 (284)
T PRK14179 159 KHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSRTR--------------------------------------NLAEVAR 200 (284)
T ss_pred CEEEEECCCCcCcHHHHHHHHHCCCEEEEECCCCC--------------------------------------CHHHHHh
Confidence 68999999 99999999999999999999842111 12 3467
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecC
Q 008509 226 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNT 262 (563)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~snt 262 (563)
+||+||.|++..-.++.. .+++++++++.+
T Consensus 201 ~ADIVI~avg~~~~v~~~-------~ik~GavVIDvg 230 (284)
T PRK14179 201 KADILVVAIGRGHFVTKE-------FVKEGAVVIDVG 230 (284)
T ss_pred hCCEEEEecCccccCCHH-------HccCCcEEEEec
Confidence 899999999866544433 378999887654
No 300
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=96.97 E-value=0.0023 Score=59.62 Aligned_cols=75 Identities=17% Similarity=0.199 Sum_probs=47.8
Q ss_pred eEEEEcCCcchHHHHH--HHHhC----CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCc-
Q 008509 149 KVAVIGGGLMGSGIAT--AHILN----NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY- 221 (563)
Q Consensus 149 kv~ViGaG~mG~~iA~--~la~~----G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~- 221 (563)
||+|||+|..-.+.-. .+... +-+|+++|+|+++++....-.+.. .+.-..+ -++..++|.
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~----~~~~~~~--------~~v~~ttd~~ 68 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRM----VEEAGAD--------LKVEATTDRR 68 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHH----HHHCTTS--------SEEEEESSHH
T ss_pred CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHH----HHhcCCC--------eEEEEeCCHH
Confidence 7999999988766432 23322 348999999999988754333333 2221111 247778888
Q ss_pred ccccCCCEEEEecC
Q 008509 222 SEFKDVDMVIEAVI 235 (563)
Q Consensus 222 ~~l~~aDlVieav~ 235 (563)
+++++||+||.++-
T Consensus 69 eAl~gADfVi~~ir 82 (183)
T PF02056_consen 69 EALEGADFVINQIR 82 (183)
T ss_dssp HHHTTESEEEE---
T ss_pred HHhCCCCEEEEEee
Confidence 58999999998873
No 301
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.97 E-value=0.0017 Score=66.76 Aligned_cols=107 Identities=18% Similarity=0.186 Sum_probs=65.6
Q ss_pred eeEEEEcC-CcchHHHHHHHHhCC-------CeEEEEeCCHHH--HHHHHHHHHHHHHHHHHcCCCCHHHHH-hhhcCee
Q 008509 148 RKVAVIGG-GLMGSGIATAHILNN-------IYVVLKEVNSEY--LLKGIKTIEANVRGLVTRGKLTQDKAN-NALKMLK 216 (563)
Q Consensus 148 ~kv~ViGa-G~mG~~iA~~la~~G-------~~V~l~d~~~~~--~~~~~~~i~~~~~~~~~~g~~~~~~~~-~~~~~i~ 216 (563)
-||+|+|+ |.+|+.++..|+..+ .+|+++|+++.. ++. . .++-.+.. ....++.
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g-~--------------~~Dl~d~~~~~~~~~~ 67 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEG-V--------------VMELQDCAFPLLKSVV 67 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccc-e--------------eeehhhccccccCCce
Confidence 47999999 999999999998855 589999996531 211 0 01100000 0112334
Q ss_pred eecC-cccccCCCEEEEecCC--------------ChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHh
Q 008509 217 GVLD-YSEFKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNTSTIDLNIVG 271 (563)
Q Consensus 217 ~~~~-~~~l~~aDlVieav~e--------------~~~~k~~v~~~l~~~~~~~~ii~sntS~l~i~~la 271 (563)
...+ ++++++||+||.+.-- |..+.+++..++.+++++++++...|. |++.+.
T Consensus 68 ~~~~~~~~l~~aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsN--PvD~~t 135 (325)
T cd01336 68 ATTDPEEAFKDVDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGN--PANTNA 135 (325)
T ss_pred ecCCHHHHhCCCCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecC--cHHHHH
Confidence 3456 4889999999977521 222335566678888777776654442 554443
No 302
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=96.96 E-value=0.0032 Score=58.13 Aligned_cols=74 Identities=23% Similarity=0.253 Sum_probs=54.7
Q ss_pred eeEEEEcCCcc-hHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCcccccC
Q 008509 148 RKVAVIGGGLM-GSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 226 (563)
Q Consensus 148 ~kv~ViGaG~m-G~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 226 (563)
++|.|||+|-| |..+|..|.+.|.+|++.+++.+.+. +.+.+
T Consensus 45 k~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~~~l~-------------------------------------~~l~~ 87 (168)
T cd01080 45 KKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKTKNLK-------------------------------------EHTKQ 87 (168)
T ss_pred CEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCchhHH-------------------------------------HHHhh
Confidence 68999999987 88899999999999999998753221 24678
Q ss_pred CCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCCCC
Q 008509 227 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI 265 (563)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS~l 265 (563)
||+||.|++...-++.+ .++++.+|++....-
T Consensus 88 aDiVIsat~~~~ii~~~-------~~~~~~viIDla~pr 119 (168)
T cd01080 88 ADIVIVAVGKPGLVKGD-------MVKPGAVVIDVGINR 119 (168)
T ss_pred CCEEEEcCCCCceecHH-------HccCCeEEEEccCCC
Confidence 99999999864333333 245667777655443
No 303
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=96.95 E-value=0.0016 Score=65.64 Aligned_cols=72 Identities=15% Similarity=0.208 Sum_probs=51.8
Q ss_pred eeEEEEcCCcchHHHHHHHHhCC-CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCc-cccc
Q 008509 148 RKVAVIGGGLMGSGIATAHILNN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 225 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 225 (563)
++|.|+|+|.+|.+++..|+..| .+|++++|+.++++...+.+. ..+ .+....+. +.+.
T Consensus 124 k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~-------~~~------------~~~~~~~~~~~~~ 184 (278)
T PRK00258 124 KRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFG-------ALG------------KAELDLELQEELA 184 (278)
T ss_pred CEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhh-------hcc------------ceeecccchhccc
Confidence 57999999999999999999999 699999999987765432221 000 01111122 4568
Q ss_pred CCCEEEEecCCCh
Q 008509 226 DVDMVIEAVIESV 238 (563)
Q Consensus 226 ~aDlVieav~e~~ 238 (563)
++|+||.|+|..+
T Consensus 185 ~~DivInaTp~g~ 197 (278)
T PRK00258 185 DFDLIINATSAGM 197 (278)
T ss_pred cCCEEEECCcCCC
Confidence 8999999998664
No 304
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=96.94 E-value=0.0024 Score=60.53 Aligned_cols=40 Identities=28% Similarity=0.307 Sum_probs=35.6
Q ss_pred eeEEEEcC-CcchHHHHHHHHhCCCeEEEEeCCHHHHHHHH
Q 008509 148 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGI 187 (563)
Q Consensus 148 ~kv~ViGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (563)
+++.|+|+ |.+|..++..|+..|++|++++|+.++++...
T Consensus 29 ~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~ 69 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAA 69 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH
Confidence 67999996 99999999999999999999999988766543
No 305
>PRK07340 ornithine cyclodeaminase; Validated
Probab=96.93 E-value=0.0025 Score=64.97 Aligned_cols=92 Identities=15% Similarity=0.134 Sum_probs=62.9
Q ss_pred ceeEEEEcCCcchHHHHHHHHh-CCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCc-cc
Q 008509 147 VRKVAVIGGGLMGSGIATAHIL-NNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 223 (563)
Q Consensus 147 ~~kv~ViGaG~mG~~iA~~la~-~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 223 (563)
-++|+|||+|.||...+..+.. .+. +|.+|++++++.++..+++. +.+. .+. ..+. ++
T Consensus 125 ~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~-------~~~~-----------~~~-~~~~~~a 185 (304)
T PRK07340 125 PGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHAR-------ALGP-----------TAE-PLDGEAI 185 (304)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHH-------hcCC-----------eeE-ECCHHHH
Confidence 3689999999999999999875 564 79999999998776543321 1110 112 3344 47
Q ss_pred ccCCCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCCC
Q 008509 224 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 264 (563)
Q Consensus 224 l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS~ 264 (563)
+.+||+||.|.|... .++.. .++|++.|....|.
T Consensus 186 v~~aDiVitaT~s~~----Pl~~~---~~~~g~hi~~iGs~ 219 (304)
T PRK07340 186 PEAVDLVVTATTSRT----PVYPE---AARAGRLVVAVGAF 219 (304)
T ss_pred hhcCCEEEEccCCCC----ceeCc---cCCCCCEEEecCCC
Confidence 899999999998653 33332 35788877655543
No 306
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=96.93 E-value=0.0064 Score=58.15 Aligned_cols=131 Identities=16% Similarity=0.179 Sum_probs=79.3
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCcccccCC
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 227 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 227 (563)
++|.|||+|.+|..-+..|++.|.+|++++.+... . +..+.+.|.+. .+...-..+.+.++
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~--~--------l~~l~~~~~i~---------~~~~~~~~~dl~~~ 70 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLKAGAQLRVIAEELES--E--------LTLLAEQGGIT---------WLARCFDADILEGA 70 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCH--H--------HHHHHHcCCEE---------EEeCCCCHHHhCCc
Confidence 58999999999999999999999999999886541 1 11122333221 01111122468899
Q ss_pred CEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhhhccCCCceeecccCCCC--CCCCeEEEEeCCCCCH
Q 008509 228 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPA--HVMPLLEIVRTERTSA 305 (563)
Q Consensus 228 DlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS~l~i~~la~~~~~~~r~ig~hf~~P~--~~~~lvEiv~~~~t~~ 305 (563)
|+||-|. ++.++...++.. +....+++.+.+... -..|+.|. ...++.--+.+...+|
T Consensus 71 ~lVi~at-~d~~ln~~i~~~----a~~~~ilvn~~d~~e---------------~~~f~~pa~~~~g~l~iaisT~G~sP 130 (205)
T TIGR01470 71 FLVIAAT-DDEELNRRVAHA----ARARGVPVNVVDDPE---------------LCSFIFPSIVDRSPVVVAISSGGAAP 130 (205)
T ss_pred EEEEECC-CCHHHHHHHHHH----HHHcCCEEEECCCcc---------------cCeEEEeeEEEcCCEEEEEECCCCCc
Confidence 9999874 455565555544 333344443332211 12344553 4556666677777788
Q ss_pred HHHHHHHHHHHH
Q 008509 306 QVILDLMTVGKI 317 (563)
Q Consensus 306 ~~~~~~~~l~~~ 317 (563)
.....+++-++.
T Consensus 131 ~la~~lr~~ie~ 142 (205)
T TIGR01470 131 VLARLLRERIET 142 (205)
T ss_pred HHHHHHHHHHHH
Confidence 777666665544
No 307
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=96.91 E-value=0.0095 Score=60.57 Aligned_cols=118 Identities=12% Similarity=0.049 Sum_probs=77.9
Q ss_pred cceeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCccccc
Q 008509 146 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 225 (563)
Q Consensus 146 ~~~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 225 (563)
.-++|+|+|+|.+|..+|+.|...|..+.-+.|++...+.... .+. ...+..+.+.
T Consensus 161 ~gK~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~-----------~~~-------------~~~d~~~~~~ 216 (336)
T KOG0069|consen 161 EGKTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPEEAYE-----------YYA-------------EFVDIEELLA 216 (336)
T ss_pred cCCEEEEecCcHHHHHHHHhhhhccceeeeecccCCchhhHHH-----------hcc-------------cccCHHHHHh
Confidence 3479999999999999999999999444444554443322210 010 0122235678
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCCCC--CHHHHhhhcc-CCCceeecccCC
Q 008509 226 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI--DLNIVGEKTS-SQDRIIGAHFFS 287 (563)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS~l--~i~~la~~~~-~~~r~ig~hf~~ 287 (563)
++|+||.|.|-+.+...-+-+++-..++++.+|++..=+- .-..+.+++. .+-.-.|+.-|+
T Consensus 217 ~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL~sG~i~~aGlDVf~ 281 (336)
T KOG0069|consen 217 NSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTARGAIIDEEALVEALKSGKIAGAGLDVFE 281 (336)
T ss_pred hCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEeccccccccHHHHHHHHhcCCcccccccccC
Confidence 9999999999999887777788999999999887544332 3334555553 222334566565
No 308
>PRK04148 hypothetical protein; Provisional
Probab=96.89 E-value=0.011 Score=52.05 Aligned_cols=94 Identities=18% Similarity=0.166 Sum_probs=64.2
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCcccccCC
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 227 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 227 (563)
++|.+||+| -|..+|..|++.|++|+.+|+++++++.+.+. +. . ...+.+ +..+.+--+++
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~-----------~~-~-----~v~dDl-f~p~~~~y~~a 78 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKL-----------GL-N-----AFVDDL-FNPNLEIYKNA 78 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHh-----------CC-e-----EEECcC-CCCCHHHHhcC
Confidence 579999999 89999999999999999999999987765321 10 0 000011 12233556899
Q ss_pred CEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecC
Q 008509 228 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNT 262 (563)
Q Consensus 228 DlVieav~e~~~~k~~v~~~l~~~~~~~~ii~snt 262 (563)
|+|-+.-|. .++ +.-+-+|.+.+..+.+|..-+
T Consensus 79 ~liysirpp-~el-~~~~~~la~~~~~~~~i~~l~ 111 (134)
T PRK04148 79 KLIYSIRPP-RDL-QPFILELAKKINVPLIIKPLS 111 (134)
T ss_pred CEEEEeCCC-HHH-HHHHHHHHHHcCCCEEEEcCC
Confidence 999988774 344 344456777777777775433
No 309
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=96.88 E-value=0.00065 Score=74.33 Aligned_cols=43 Identities=16% Similarity=0.209 Sum_probs=40.2
Q ss_pred CccCCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccC
Q 008509 1 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARR 43 (563)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~~~~~~ 43 (563)
|+|||++++|+||+++||||+|||++++.+.+.+++++++..+
T Consensus 192 llltG~~i~AeeA~~~GLVd~vv~~d~l~~~a~~~A~~ia~~~ 234 (550)
T PRK08184 192 FCTIEEGVRGKRAVDWRLVDEVVKPSKFDAKVAERAAELAAAS 234 (550)
T ss_pred HHHhCCcccHHHHHHcCCccEeeCHHHHHHHHHHHHHHHHhCC
Confidence 4689999999999999999999999999999999999998864
No 310
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=96.88 E-value=0.0051 Score=53.59 Aligned_cols=99 Identities=20% Similarity=0.164 Sum_probs=59.8
Q ss_pred eEEEEcC-CcchHHHHHHHHhC-CCeEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCccc--
Q 008509 149 KVAVIGG-GLMGSGIATAHILN-NIYVVLK-EVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE-- 223 (563)
Q Consensus 149 kv~ViGa-G~mG~~iA~~la~~-G~~V~l~-d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-- 223 (563)
||+|+|+ |.+|..++..+... +++|+.+ +++.+..+.. .. ..+.++. .+....+.+.
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~----~~------~~~~~~~--------~~~~~~~~~~~~ 62 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRV----SE------AGPHLKG--------EVVLELEPEDFE 62 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCH----HH------HCccccc--------ccccccccCChh
Confidence 5899995 99999999999885 8888766 5543221111 00 0011110 0000111122
Q ss_pred ccCCCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCCCCCH
Q 008509 224 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL 267 (563)
Q Consensus 224 l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS~l~i 267 (563)
..++|+||.|+|.+... ++...+...+.+++++++.+|++..
T Consensus 63 ~~~~DvV~~~~~~~~~~--~~~~~~~~~~~~g~~viD~s~~~~~ 104 (122)
T smart00859 63 ELAVDIVFLALPHGVSK--EIAPLLPKAAEAGVKVIDLSSAFRM 104 (122)
T ss_pred hcCCCEEEEcCCcHHHH--HHHHHHHhhhcCCCEEEECCccccC
Confidence 25899999999987543 3333444556889999998887754
No 311
>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=96.87 E-value=0.054 Score=53.70 Aligned_cols=111 Identities=18% Similarity=0.221 Sum_probs=72.1
Q ss_pred ceeEEEEcCCcchHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHH----HHHHHHHHHHcCCCCHHHHHhhh-cCeeeec
Q 008509 147 VRKVAVIGGGLMGSGIATAHILN--NIYVVLKEVNSEYLLKGIKT----IEANVRGLVTRGKLTQDKANNAL-KMLKGVL 219 (563)
Q Consensus 147 ~~kv~ViGaG~mG~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~----i~~~~~~~~~~g~~~~~~~~~~~-~~i~~~~ 219 (563)
|.||.-||+|.+|..-...++.. .++|+++|++..++..=... .+..++.-+ .+.. .++-+++
T Consensus 1 ~~kiccigagyvggptcavia~kcp~i~vtvvd~s~~ri~~wnsd~lpiyepgldevv----------~~crgknlffst 70 (481)
T KOG2666|consen 1 MVKICCIGAGYVGGPTCAVIALKCPDIEVTVVDISVPRINAWNSDKLPIYEPGLDEVV----------KQCRGKNLFFST 70 (481)
T ss_pred CceEEEecCcccCCcchheeeecCCceEEEEEecCchHhhcccCCCCcccCCCHHHHH----------HHhcCCceeeec
Confidence 46899999999999887777654 57999999999886642111 011111111 1111 2466788
Q ss_pred Ccc-cccCCCEEEEecCC-------------ChHHHHHHHHHHHhhCCCCeEEEecCCCCCHH
Q 008509 220 DYS-EFKDVDMVIEAVIE-------------SVPLKQKIFSELEKACPPHCILATNTSTIDLN 268 (563)
Q Consensus 220 ~~~-~l~~aDlVieav~e-------------~~~~k~~v~~~l~~~~~~~~ii~sntS~l~i~ 268 (563)
|.+ ++..+|+|+.+|.. ++..-.+.-+.|.+....+.|++ --|+.|+.
T Consensus 71 diekai~eadlvfisvntptkt~g~gkg~aadlky~es~ar~ia~~s~~~kivv-ekstvpv~ 132 (481)
T KOG2666|consen 71 DIEKAIKEADLVFISVNTPTKTYGLGKGKAADLKYWESAARMIADVSVSDKIVV-EKSTVPVK 132 (481)
T ss_pred chHHHhhhcceEEEEecCCcccccCCCCcccchhHHHHHHHHHHHhccCCeEEE-eeccccch
Confidence 885 88999999998842 33333444556777777777765 45677764
No 312
>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase. Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=96.87 E-value=0.0018 Score=66.32 Aligned_cols=41 Identities=15% Similarity=0.142 Sum_probs=33.6
Q ss_pred CccCCCCCCHHHHHhCCCcceecCCchH------------HHHHHHHHHhhhc
Q 008509 1 MMLLSKSITSEEGWKLGLIDAVVTSEEL------------LKVSRLWALDIAA 41 (563)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l------------~~~A~~~a~~~~~ 41 (563)
|+++|++++|+||+++||||+|||+.++ ++.+.++++.+..
T Consensus 188 llltGe~~sA~EA~~~GLVd~VVp~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 240 (360)
T TIGR03200 188 SGTLCEPWSAHKAKRLGIIMDVVPALKVDGKFVANPLVVTDRYLDEFGRIVHG 240 (360)
T ss_pred HHHhCCcCcHHHHHHcCChheecCchhcCcchhcCcccchHHHHHHHhHHhcC
Confidence 5789999999999999999999998877 5566666655544
No 313
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=96.82 E-value=0.0036 Score=66.59 Aligned_cols=88 Identities=23% Similarity=0.287 Sum_probs=61.8
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCc-ccccC
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 226 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 226 (563)
++|+|||.|.+|.++|..+...|.+|+++|+++.....+. ..|. . ..++ +.++.
T Consensus 255 KtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~-----------~~G~-------------~-~~~leell~~ 309 (476)
T PTZ00075 255 KTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAA-----------MEGY-------------Q-VVTLEDVVET 309 (476)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHH-----------hcCc-------------e-eccHHHHHhc
Confidence 6899999999999999999999999999999987643321 1121 1 1123 45789
Q ss_pred CCEEEEecCCChHHHHHHH-HHHHhhCCCCeEEEecCCCCC
Q 008509 227 VDMVIEAVIESVPLKQKIF-SELEKACPPHCILATNTSTID 266 (563)
Q Consensus 227 aDlVieav~e~~~~k~~v~-~~l~~~~~~~~ii~sntS~l~ 266 (563)
+|+||.+... +.++ .+..+.++++++|+. ++...
T Consensus 310 ADIVI~atGt-----~~iI~~e~~~~MKpGAiLIN-vGr~d 344 (476)
T PTZ00075 310 ADIFVTATGN-----KDIITLEHMRRMKNNAIVGN-IGHFD 344 (476)
T ss_pred CCEEEECCCc-----ccccCHHHHhccCCCcEEEE-cCCCc
Confidence 9999998642 2344 355566889998864 44433
No 314
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=96.81 E-value=0.002 Score=68.65 Aligned_cols=38 Identities=21% Similarity=0.260 Sum_probs=34.4
Q ss_pred eeEEEEcCCcchHHHHHHHHhCC-CeEEEEeCCHHHHHH
Q 008509 148 RKVAVIGGGLMGSGIATAHILNN-IYVVLKEVNSEYLLK 185 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G-~~V~l~d~~~~~~~~ 185 (563)
++|+|||+|.||..++..|...| .+|++++++.++.+.
T Consensus 181 ~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~ 219 (417)
T TIGR01035 181 KKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAED 219 (417)
T ss_pred CEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHH
Confidence 68999999999999999999999 789999999887544
No 315
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=96.73 E-value=0.0071 Score=62.30 Aligned_cols=90 Identities=14% Similarity=0.183 Sum_probs=59.9
Q ss_pred eeEEEEcCCcchHHHHHHHH-hCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCc-ccc
Q 008509 148 RKVAVIGGGLMGSGIATAHI-LNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 224 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la-~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 224 (563)
++++|||+|.+|...+..++ ..++ +|++|+|++++.+...+++...+ | + .+....+. +.+
T Consensus 130 ~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~------g-~----------~v~~~~~~~~av 192 (326)
T TIGR02992 130 SVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLL------G-I----------DVTAATDPRAAM 192 (326)
T ss_pred cEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhc------C-c----------eEEEeCCHHHHh
Confidence 68999999999999999887 4675 69999999998776544332111 1 0 13334555 467
Q ss_pred cCCCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEe
Q 008509 225 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILAT 260 (563)
Q Consensus 225 ~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s 260 (563)
.+||+||.|.|.... ++. .+.+++++.+..
T Consensus 193 ~~aDiVvtaT~s~~p----~i~--~~~l~~g~~i~~ 222 (326)
T TIGR02992 193 SGADIIVTTTPSETP----ILH--AEWLEPGQHVTA 222 (326)
T ss_pred ccCCEEEEecCCCCc----Eec--HHHcCCCcEEEe
Confidence 899999999876432 221 123566665543
No 316
>PLN02494 adenosylhomocysteinase
Probab=96.72 E-value=0.0086 Score=63.64 Aligned_cols=97 Identities=16% Similarity=0.233 Sum_probs=66.0
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCc-ccccC
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 226 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 226 (563)
++|+|+|.|.+|.++|+.+...|.+|+++|+++.+...+. ..|. .. .++ +.++.
T Consensus 255 KtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~-----------~~G~-------------~v-v~leEal~~ 309 (477)
T PLN02494 255 KVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQAL-----------MEGY-------------QV-LTLEDVVSE 309 (477)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHH-----------hcCC-------------ee-ccHHHHHhh
Confidence 6899999999999999999999999999999987543321 1121 00 122 35678
Q ss_pred CCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCC---CCCHHHHhhh
Q 008509 227 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS---TIDLNIVGEK 273 (563)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS---~l~i~~la~~ 273 (563)
+|+||++.... ..+..+..+.++++++|+..+. -+....|.+.
T Consensus 310 ADVVI~tTGt~----~vI~~e~L~~MK~GAiLiNvGr~~~eID~~aL~~~ 355 (477)
T PLN02494 310 ADIFVTTTGNK----DIIMVDHMRKMKNNAIVCNIGHFDNEIDMLGLETY 355 (477)
T ss_pred CCEEEECCCCc----cchHHHHHhcCCCCCEEEEcCCCCCccCHHHHhhc
Confidence 99999875432 2233556667899998876544 2444555443
No 317
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=96.69 E-value=0.0039 Score=65.28 Aligned_cols=40 Identities=25% Similarity=0.334 Sum_probs=35.8
Q ss_pred ceeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHHHHHHH
Q 008509 147 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKG 186 (563)
Q Consensus 147 ~~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 186 (563)
-.+|.|||+|.+|...+..+...|.+|+++|+++++++..
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l 206 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQL 206 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHH
Confidence 3679999999999999999999999999999998876553
No 318
>PRK08291 ectoine utilization protein EutC; Validated
Probab=96.68 E-value=0.0082 Score=61.98 Aligned_cols=74 Identities=16% Similarity=0.136 Sum_probs=52.9
Q ss_pred ceeEEEEcCCcchHHHHHHHHh-CC-CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCc-cc
Q 008509 147 VRKVAVIGGGLMGSGIATAHIL-NN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 223 (563)
Q Consensus 147 ~~kv~ViGaG~mG~~iA~~la~-~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 223 (563)
.++|+|||+|.+|...+..++. .+ .+|++|+|++++++...+.+.+.+ | + .+....++ ++
T Consensus 132 ~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~------g-~----------~v~~~~d~~~a 194 (330)
T PRK08291 132 ASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAEL------G-I----------PVTVARDVHEA 194 (330)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhcc------C-c----------eEEEeCCHHHH
Confidence 3689999999999998888875 45 589999999998877544332111 1 0 13344555 46
Q ss_pred ccCCCEEEEecCCC
Q 008509 224 FKDVDMVIEAVIES 237 (563)
Q Consensus 224 l~~aDlVieav~e~ 237 (563)
+.+||+||.|.|..
T Consensus 195 l~~aDiVi~aT~s~ 208 (330)
T PRK08291 195 VAGADIIVTTTPSE 208 (330)
T ss_pred HccCCEEEEeeCCC
Confidence 78899999998764
No 319
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=96.61 E-value=0.005 Score=66.70 Aligned_cols=70 Identities=17% Similarity=0.199 Sum_probs=51.1
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCcccccCC
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 227 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 227 (563)
+++.|+|+|.||.+++..++..|++|+++++++++++...+.+ ..... ...+...+.++
T Consensus 333 k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~--------~~~~~-------------~~~~~~~l~~~ 391 (477)
T PRK09310 333 QHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRC--------QGKAF-------------PLESLPELHRI 391 (477)
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh--------cccee-------------chhHhcccCCC
Confidence 5799999999999999999999999999999988765532110 00001 11122346789
Q ss_pred CEEEEecCCCh
Q 008509 228 DMVIEAVIESV 238 (563)
Q Consensus 228 DlVieav~e~~ 238 (563)
|+||.|+|..+
T Consensus 392 DiVInatP~g~ 402 (477)
T PRK09310 392 DIIINCLPPSV 402 (477)
T ss_pred CEEEEcCCCCC
Confidence 99999998765
No 320
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=96.58 E-value=0.0062 Score=61.37 Aligned_cols=39 Identities=18% Similarity=0.098 Sum_probs=35.2
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCC-eEEEEeCCHHHHHHH
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKG 186 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~ 186 (563)
++|.|||+|-+|.+++..|+..|. +|++++|++++.+..
T Consensus 126 k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~L 165 (282)
T TIGR01809 126 FRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRL 165 (282)
T ss_pred ceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHH
Confidence 579999999999999999999997 799999999877654
No 321
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=96.55 E-value=0.0026 Score=67.96 Aligned_cols=38 Identities=26% Similarity=0.312 Sum_probs=34.5
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCC-eEEEEeCCHHHHHH
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLK 185 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~ 185 (563)
++|+|||+|.||..++..+...|. +|+++++++++++.
T Consensus 183 ~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~ 221 (423)
T PRK00045 183 KKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEE 221 (423)
T ss_pred CEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHH
Confidence 689999999999999999999998 89999999987654
No 322
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=96.48 E-value=0.01 Score=55.37 Aligned_cols=36 Identities=17% Similarity=0.207 Sum_probs=32.9
Q ss_pred EEEEcC-CcchHHHHHHHHhCCCeEEEEeCCHHHHHH
Q 008509 150 VAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLK 185 (563)
Q Consensus 150 v~ViGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~ 185 (563)
|.|+|+ |.+|..++..|.+.|++|+++-|++++++.
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~ 37 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED 37 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc
Confidence 689997 999999999999999999999999987553
No 323
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=96.47 E-value=0.017 Score=54.79 Aligned_cols=91 Identities=20% Similarity=0.260 Sum_probs=57.1
Q ss_pred eEEEEcCCcchHHHHHHHHhC--CC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCccc-c
Q 008509 149 KVAVIGGGLMGSGIATAHILN--NI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE-F 224 (563)
Q Consensus 149 kv~ViGaG~mG~~iA~~la~~--G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-l 224 (563)
+|++||+|.+|..+...+... .+ -|.+||++.+++...... .+ ...++++++ +
T Consensus 2 ~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~----------~~-------------~~~~s~ide~~ 58 (255)
T COG1712 2 KVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEAS----------VG-------------RRCVSDIDELI 58 (255)
T ss_pred eEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhh----------cC-------------CCccccHHHHh
Confidence 799999999999998877654 34 478999999986653210 01 112356654 4
Q ss_pred cCCCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCCCCC
Q 008509 225 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID 266 (563)
Q Consensus 225 ~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS~l~ 266 (563)
.+.|+|+||...+ ..++..-++.+ ..-+.|+.| ++.+.
T Consensus 59 ~~~DlvVEaAS~~--Av~e~~~~~L~-~g~d~iV~S-VGALa 96 (255)
T COG1712 59 AEVDLVVEAASPE--AVREYVPKILK-AGIDVIVMS-VGALA 96 (255)
T ss_pred hccceeeeeCCHH--HHHHHhHHHHh-cCCCEEEEe-chhcc
Confidence 9999999998532 23333333322 123566665 44444
No 324
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=96.46 E-value=0.016 Score=58.94 Aligned_cols=94 Identities=15% Similarity=0.136 Sum_probs=62.9
Q ss_pred ceeEEEEcCCcchHHHHHHHHhC-CC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCc-cc
Q 008509 147 VRKVAVIGGGLMGSGIATAHILN-NI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 223 (563)
Q Consensus 147 ~~kv~ViGaG~mG~~iA~~la~~-G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 223 (563)
.++++|||+|.+|..-+..++.- .+ +|.+|++++++.++..+++.+.+ | -.+....+. ++
T Consensus 117 a~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~------~-----------~~v~~~~~~~ea 179 (301)
T PRK06407 117 VENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEF------G-----------VDIRPVDNAEAA 179 (301)
T ss_pred CcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhc------C-----------CcEEEeCCHHHH
Confidence 47899999999999888777653 33 79999999999887654433211 1 024445555 57
Q ss_pred ccCCCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCC
Q 008509 224 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 263 (563)
Q Consensus 224 l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS 263 (563)
+.+||+|+.|.+... .++. .+.++|++.|....|
T Consensus 180 v~~aDIV~taT~s~~----P~~~--~~~l~pg~hV~aiGs 213 (301)
T PRK06407 180 LRDADTITSITNSDT----PIFN--RKYLGDEYHVNLAGS 213 (301)
T ss_pred HhcCCEEEEecCCCC----cEec--HHHcCCCceEEecCC
Confidence 899999999887543 2221 124567766655444
No 325
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=96.45 E-value=0.0046 Score=53.84 Aligned_cols=99 Identities=17% Similarity=0.187 Sum_probs=59.2
Q ss_pred eEEEEc-CCcchHHHHHHHHhC-CCe-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeec-Ccccc
Q 008509 149 KVAVIG-GGLMGSGIATAHILN-NIY-VVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL-DYSEF 224 (563)
Q Consensus 149 kv~ViG-aG~mG~~iA~~la~~-G~~-V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~l 224 (563)
||+||| .|.+|..+...|+++ .++ +.++.++.+.-... .. .... ......+.... +.+.+
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~----~~----~~~~--------~~~~~~~~~~~~~~~~~ 64 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPL----SE----VFPH--------PKGFEDLSVEDADPEEL 64 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBH----HH----TTGG--------GTTTEEEBEEETSGHHH
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCee----eh----hccc--------cccccceeEeecchhHh
Confidence 799999 799999999999985 445 44556655211110 00 0000 00011222222 45678
Q ss_pred cCCCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHH
Q 008509 225 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN 268 (563)
Q Consensus 225 ~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS~l~i~ 268 (563)
.++|+||.|+|.. ..+++..++ +..++.++++++.....
T Consensus 65 ~~~Dvvf~a~~~~--~~~~~~~~~---~~~g~~ViD~s~~~R~~ 103 (121)
T PF01118_consen 65 SDVDVVFLALPHG--ASKELAPKL---LKAGIKVIDLSGDFRLD 103 (121)
T ss_dssp TTESEEEE-SCHH--HHHHHHHHH---HHTTSEEEESSSTTTTS
T ss_pred hcCCEEEecCchh--HHHHHHHHH---hhCCcEEEeCCHHHhCC
Confidence 9999999999854 344554444 56788888988876543
No 326
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=96.44 E-value=0.052 Score=53.83 Aligned_cols=87 Identities=18% Similarity=0.194 Sum_probs=64.6
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCcccccCC
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 227 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 227 (563)
++|+|||.|.-|.+=|..|..+|++|++--+..... ++++.+.| ...-+--++++.|
T Consensus 19 K~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s----------~~kA~~dG-------------f~V~~v~ea~k~A 75 (338)
T COG0059 19 KKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSS----------WKKAKEDG-------------FKVYTVEEAAKRA 75 (338)
T ss_pred CeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchh----------HHHHHhcC-------------CEeecHHHHhhcC
Confidence 689999999999999999999999988766544331 11222333 2222223688999
Q ss_pred CEEEEecCCChHHHHHHHH-HHHhhCCCCeEEE
Q 008509 228 DMVIEAVIESVPLKQKIFS-ELEKACPPHCILA 259 (563)
Q Consensus 228 DlVieav~e~~~~k~~v~~-~l~~~~~~~~ii~ 259 (563)
|+|+.-+|+.. -.+++. +|.+.++.+..+.
T Consensus 76 Dvim~L~PDe~--q~~vy~~~I~p~Lk~G~aL~ 106 (338)
T COG0059 76 DVVMILLPDEQ--QKEVYEKEIAPNLKEGAALG 106 (338)
T ss_pred CEEEEeCchhh--HHHHHHHHhhhhhcCCceEE
Confidence 99999999764 457887 8999999988664
No 327
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=96.39 E-value=0.0063 Score=58.13 Aligned_cols=32 Identities=25% Similarity=0.323 Sum_probs=30.3
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCC-eEEEEeCC
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVN 179 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~-~V~l~d~~ 179 (563)
.+|.|||+|.+|+.+|..|+..|. +++++|.+
T Consensus 22 ~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 22 SHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 579999999999999999999998 89999987
No 328
>PRK06046 alanine dehydrogenase; Validated
Probab=96.38 E-value=0.016 Score=59.62 Aligned_cols=94 Identities=12% Similarity=0.068 Sum_probs=60.6
Q ss_pred ceeEEEEcCCcchHHHHHHHHhC-CC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCcc-c
Q 008509 147 VRKVAVIGGGLMGSGIATAHILN-NI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS-E 223 (563)
Q Consensus 147 ~~kv~ViGaG~mG~~iA~~la~~-G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~ 223 (563)
.++|+|||+|.||...+..++.. ++ .|.+||+++++.++..+.+.+.+ + -.+....+++ .
T Consensus 129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~------~-----------~~v~~~~~~~~~ 191 (326)
T PRK06046 129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVV------G-----------CDVTVAEDIEEA 191 (326)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhc------C-----------ceEEEeCCHHHH
Confidence 46899999999999999888743 44 78899999988777554332110 1 0133445554 4
Q ss_pred ccCCCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCCC
Q 008509 224 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 264 (563)
Q Consensus 224 l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS~ 264 (563)
++ +|+|+.|.|... .+|. .+.+++++.|.+..|.
T Consensus 192 l~-aDiVv~aTps~~----P~~~--~~~l~~g~hV~~iGs~ 225 (326)
T PRK06046 192 CD-CDILVTTTPSRK----PVVK--AEWIKEGTHINAIGAD 225 (326)
T ss_pred hh-CCEEEEecCCCC----cEec--HHHcCCCCEEEecCCC
Confidence 44 999999998643 2221 1245677766554443
No 329
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=96.37 E-value=0.026 Score=56.08 Aligned_cols=100 Identities=19% Similarity=0.226 Sum_probs=53.3
Q ss_pred ceeEEEEcCCcchHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeee-cCc--
Q 008509 147 VRKVAVIGGGLMGSGIATAHILN--NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV-LDY-- 221 (563)
Q Consensus 147 ~~kv~ViGaG~mG~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~-- 221 (563)
-+||++||.|.+--..-...... |..|..+|+++++.+.+.+-+.+.+. .. .++.+. .|.
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~--L~-------------~~m~f~~~d~~~ 185 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLG--LS-------------KRMSFITADVLD 185 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---H--H--------------SSEEEEES-GGG
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhccc--cc-------------CCeEEEecchhc
Confidence 36999999999865544433333 56799999999998876543331110 01 123322 222
Q ss_pred --ccccCCCEEEEecC--CChHHHHHHHHHHHhhCCCCeEEEec
Q 008509 222 --SEFKDVDMVIEAVI--ESVPLKQKIFSELEKACPPHCILATN 261 (563)
Q Consensus 222 --~~l~~aDlVieav~--e~~~~k~~v~~~l~~~~~~~~ii~sn 261 (563)
.++.++|+|+.|.- .+.+-|.+++..|.++++++++++.-
T Consensus 186 ~~~dl~~~DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 186 VTYDLKEYDVVFLAALVGMDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp G-GG----SEEEE-TT-S----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred cccccccCCEEEEhhhcccccchHHHHHHHHHhhCCCCcEEEEe
Confidence 35789999998853 33446999999999999999988754
No 330
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=96.37 E-value=0.0076 Score=55.31 Aligned_cols=38 Identities=29% Similarity=0.291 Sum_probs=35.3
Q ss_pred eeEEEEcC-CcchHHHHHHHHhCCCeEEEEeCCHHHHHH
Q 008509 148 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLK 185 (563)
Q Consensus 148 ~kv~ViGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~ 185 (563)
+||+|||+ |..|+-|+....+.||+|+.+-||++++..
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~ 39 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAA 39 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccc
Confidence 58999999 999999999999999999999999998654
No 331
>PLN00203 glutamyl-tRNA reductase
Probab=96.35 E-value=0.0051 Score=66.93 Aligned_cols=40 Identities=23% Similarity=0.259 Sum_probs=35.8
Q ss_pred ceeEEEEcCCcchHHHHHHHHhCCC-eEEEEeCCHHHHHHH
Q 008509 147 VRKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKG 186 (563)
Q Consensus 147 ~~kv~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~ 186 (563)
-++|+|||+|.||..++..|...|+ +|++++++.++++..
T Consensus 266 ~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~L 306 (519)
T PLN00203 266 SARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAAL 306 (519)
T ss_pred CCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHH
Confidence 3689999999999999999999997 799999999887653
No 332
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=96.34 E-value=0.0097 Score=59.11 Aligned_cols=66 Identities=23% Similarity=0.208 Sum_probs=44.4
Q ss_pred eeEEEEcC-CcchHHHHHHHHhC-CCeEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCcc-c
Q 008509 148 RKVAVIGG-GLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS-E 223 (563)
Q Consensus 148 ~kv~ViGa-G~mG~~iA~~la~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~ 223 (563)
.||+|+|+ |.||..++..+... +++|+ ++|++++..... .. ..+...+|++ .
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~------------~~------------~~i~~~~dl~~l 57 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQ------------GA------------LGVAITDDLEAV 57 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcccccc------------CC------------CCccccCCHHHh
Confidence 58999998 99999999888764 77766 588887643220 00 0122345553 3
Q ss_pred ccCCCEEEEecCCC
Q 008509 224 FKDVDMVIEAVIES 237 (563)
Q Consensus 224 l~~aDlVieav~e~ 237 (563)
+.++|+||++.+.+
T Consensus 58 l~~~DvVid~t~p~ 71 (257)
T PRK00048 58 LADADVLIDFTTPE 71 (257)
T ss_pred ccCCCEEEECCCHH
Confidence 46789999887654
No 333
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=96.33 E-value=0.01 Score=61.29 Aligned_cols=33 Identities=21% Similarity=0.438 Sum_probs=31.0
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCC-eEEEEeCCH
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS 180 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~ 180 (563)
++|.|||+|.+|+.+|..|+++|+ +++++|.+.
T Consensus 25 ~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 25 KHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 579999999999999999999998 899999985
No 334
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=96.30 E-value=0.2 Score=51.26 Aligned_cols=40 Identities=23% Similarity=0.131 Sum_probs=33.0
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHH
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGI 187 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (563)
++|+|+|+|-+|.--.+.....|.+|+.+|+++++++.++
T Consensus 168 ~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~ 207 (339)
T COG1064 168 KWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAK 207 (339)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHH
Confidence 6899999997776555655568999999999999987754
No 335
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=96.29 E-value=0.045 Score=47.13 Aligned_cols=67 Identities=25% Similarity=0.232 Sum_probs=48.1
Q ss_pred eEEEEcCCcchHHHHHHHHhC--CCeEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCcc-cc
Q 008509 149 KVAVIGGGLMGSGIATAHILN--NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS-EF 224 (563)
Q Consensus 149 kv~ViGaG~mG~~iA~~la~~--G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~l 224 (563)
||+|||+|.+|......+... +++|+ ++|+++++.+...+ +. .+...+|++ .+
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~----------~~-------------~~~~~~~~~~ll 58 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAE----------KY-------------GIPVYTDLEELL 58 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHH----------HT-------------TSEEESSHHHHH
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHH----------Hh-------------cccchhHHHHHH
Confidence 799999999999999888776 55654 88999988665421 11 133455664 33
Q ss_pred c--CCCEEEEecCCCh
Q 008509 225 K--DVDMVIEAVIESV 238 (563)
Q Consensus 225 ~--~aDlVieav~e~~ 238 (563)
+ +.|+|+.++|...
T Consensus 59 ~~~~~D~V~I~tp~~~ 74 (120)
T PF01408_consen 59 ADEDVDAVIIATPPSS 74 (120)
T ss_dssp HHTTESEEEEESSGGG
T ss_pred HhhcCCEEEEecCCcc
Confidence 3 7899999998764
No 336
>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=96.26 E-value=0.023 Score=64.44 Aligned_cols=95 Identities=7% Similarity=0.038 Sum_probs=74.7
Q ss_pred EEEecCCChHHHHHHHHHHHhhCCCCeEEEecCCCC--CHHHHhhhccC-CCceeecccCCCCC------------CCCe
Q 008509 230 VIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI--DLNIVGEKTSS-QDRIIGAHFFSPAH------------VMPL 294 (563)
Q Consensus 230 Vieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS~l--~i~~la~~~~~-~~r~ig~hf~~P~~------------~~~l 294 (563)
||.|+|-. ...+++.++.++++++++|++.+|+- .+..+.+.+.. +.+|+|.||+...+ ....
T Consensus 1 vila~Pv~--~~~~~~~~~~~~~~~~~~vtDv~SvK~~i~~~~~~~l~~~~~~fvg~HPMaG~e~~G~~~a~~~Lf~~~~ 78 (673)
T PRK11861 1 VLLAAPVA--QTGPLLARIAPFLDASTIVTDAGSTKSDVVAAARAALGARIGQFVPGHPIAGRESSGVDAALADLYVGRN 78 (673)
T ss_pred CEEEcCHH--HHHHHHHHHhhhCCCCcEEEecCcccHHHHHHHHHhccccCCeEEecCCcCcCcchhhhhhChhHhCCCe
Confidence 67888844 55689999999999999999888874 23444454443 35799999987654 3456
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHHhCCceEEec
Q 008509 295 LEIVRTERTSAQVILDLMTVGKIIKKVPVVVG 326 (563)
Q Consensus 295 vEiv~~~~t~~~~~~~~~~l~~~lGk~~v~~~ 326 (563)
+-+++.+.++++.++.+.+++..+|..++.+.
T Consensus 79 ~il~p~~~~~~~~~~~~~~l~~~~Ga~~~~~~ 110 (673)
T PRK11861 79 VVLCALPENAPDALARVEAMWRAARADVRAMS 110 (673)
T ss_pred EEEecCCCCCHHHHHHHHHHHHHcCCEEEECC
Confidence 77888888999999999999999999888873
No 337
>PRK06823 ornithine cyclodeaminase; Validated
Probab=96.22 E-value=0.023 Score=58.06 Aligned_cols=94 Identities=9% Similarity=0.053 Sum_probs=63.4
Q ss_pred ceeEEEEcCCcchHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCc-cc
Q 008509 147 VRKVAVIGGGLMGSGIATAHILN--NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 223 (563)
Q Consensus 147 ~~kv~ViGaG~mG~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 223 (563)
.++++|||+|.++...+..++.- --+|.+|++++++.++..+.++ +.+ -.+..+++. ++
T Consensus 128 ~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~-------~~~-----------~~v~~~~~~~~a 189 (315)
T PRK06823 128 VSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQ-------ALG-----------FAVNTTLDAAEV 189 (315)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHH-------hcC-----------CcEEEECCHHHH
Confidence 46899999999999988877643 3489999999999876543221 111 124445555 57
Q ss_pred ccCCCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCCC
Q 008509 224 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 264 (563)
Q Consensus 224 l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS~ 264 (563)
+++||+|+.|.+... .+|. .+.+++++.|....|.
T Consensus 190 v~~ADIV~taT~s~~----P~~~--~~~l~~G~hi~~iGs~ 224 (315)
T PRK06823 190 AHAANLIVTTTPSRE----PLLQ--AEDIQPGTHITAVGAD 224 (315)
T ss_pred hcCCCEEEEecCCCC----ceeC--HHHcCCCcEEEecCCC
Confidence 899999999887543 3332 1346678776655543
No 338
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=96.22 E-value=0.033 Score=53.64 Aligned_cols=126 Identities=22% Similarity=0.216 Sum_probs=76.6
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeee-cCc--cc
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE-YLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV-LDY--SE 223 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~-~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~--~~ 223 (563)
++|.|||+|.++..=+..|+..|.+|+++..+.. .+. .+.+.|. ++.. .++ +.
T Consensus 26 ~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~-----------~l~~~~~------------i~~~~r~~~~~d 82 (223)
T PRK05562 26 IKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFL-----------DLKKYGN------------LKLIKGNYDKEF 82 (223)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHH-----------HHHhCCC------------EEEEeCCCChHH
Confidence 4899999999999989999999999999966532 111 1223333 2221 122 56
Q ss_pred ccCCCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhhhccCCCceeecccCCCC--CCCCeEEEEeCC
Q 008509 224 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPA--HVMPLLEIVRTE 301 (563)
Q Consensus 224 l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS~l~i~~la~~~~~~~r~ig~hf~~P~--~~~~lvEiv~~~ 301 (563)
+.++++||-|+. +.++-+.+. ..+....+++.+.+. |+. ..|+.|. ...++.--|.+.
T Consensus 83 l~g~~LViaATd-D~~vN~~I~----~~a~~~~~lvn~vd~------------p~~---~dFi~PAiv~rg~l~IaIST~ 142 (223)
T PRK05562 83 IKDKHLIVIATD-DEKLNNKIR----KHCDRLYKLYIDCSD------------YKK---GLCIIPYQRSTKNFVFALNTK 142 (223)
T ss_pred hCCCcEEEECCC-CHHHHHHHH----HHHHHcCCeEEEcCC------------ccc---CeEEeeeEEecCCEEEEEECC
Confidence 889999999864 555554444 444443444433322 111 2355564 455666667777
Q ss_pred CCCHHHHHHHHHHHH
Q 008509 302 RTSAQVILDLMTVGK 316 (563)
Q Consensus 302 ~t~~~~~~~~~~l~~ 316 (563)
..+|.....++.-++
T Consensus 143 G~sP~lar~lR~~ie 157 (223)
T PRK05562 143 GGSPKTSVFIGEKVK 157 (223)
T ss_pred CcCcHHHHHHHHHHH
Confidence 777766665555443
No 339
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=96.20 E-value=0.052 Score=63.54 Aligned_cols=77 Identities=18% Similarity=0.179 Sum_probs=52.6
Q ss_pred CccceeEEEEcCCcchHHHHHHHHhC-CCe-------------EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Q 008509 144 PRGVRKVAVIGGGLMGSGIATAHILN-NIY-------------VVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKAN 209 (563)
Q Consensus 144 ~~~~~kv~ViGaG~mG~~iA~~la~~-G~~-------------V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~ 209 (563)
...+++|+|||+|.||..+|..|++. +++ |++.|++++.+++..+.. .+ ++
T Consensus 566 ~~~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~---------~~-~~----- 630 (1042)
T PLN02819 566 TKKSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGI---------EN-AE----- 630 (1042)
T ss_pred cccCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhc---------CC-Cc-----
Confidence 44578999999999999999999875 334 999999988766542210 01 00
Q ss_pred hhhcCeee-ecCc----ccccCCCEEEEecCCChH
Q 008509 210 NALKMLKG-VLDY----SEFKDVDMVIEAVIESVP 239 (563)
Q Consensus 210 ~~~~~i~~-~~~~----~~l~~aDlVieav~e~~~ 239 (563)
.+.. .+|. +.++++|+||.|+|....
T Consensus 631 ----~v~lDv~D~e~L~~~v~~~DaVIsalP~~~H 661 (1042)
T PLN02819 631 ----AVQLDVSDSESLLKYVSQVDVVISLLPASCH 661 (1042)
T ss_pred ----eEEeecCCHHHHHHhhcCCCEEEECCCchhh
Confidence 1222 2333 234679999999998653
No 340
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=96.20 E-value=0.024 Score=57.90 Aligned_cols=94 Identities=14% Similarity=0.119 Sum_probs=63.7
Q ss_pred cceeEEEEcCCcchHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCc-c
Q 008509 146 GVRKVAVIGGGLMGSGIATAHILN--NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S 222 (563)
Q Consensus 146 ~~~kv~ViGaG~mG~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 222 (563)
..+.++|||+|.++......+..- .-+|.+|++++++.++...+..+ ++. ..+....+. +
T Consensus 129 da~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~-------~~~----------~~v~a~~s~~~ 191 (330)
T COG2423 129 DASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRK-------RGG----------EAVGAADSAEE 191 (330)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHh-------hcC----------ccceeccCHHH
Confidence 357899999999999998877653 34899999999998876543322 221 124445555 6
Q ss_pred cccCCCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecC
Q 008509 223 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNT 262 (563)
Q Consensus 223 ~l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~snt 262 (563)
++++||+|+.|.|.+.- ++. .+.+++++-|....
T Consensus 192 av~~aDiIvt~T~s~~P----il~--~~~l~~G~hI~aiG 225 (330)
T COG2423 192 AVEGADIVVTATPSTEP----VLK--AEWLKPGTHINAIG 225 (330)
T ss_pred HhhcCCEEEEecCCCCC----eec--HhhcCCCcEEEecC
Confidence 88999999999986542 221 23456777665433
No 341
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=96.19 E-value=0.077 Score=48.47 Aligned_cols=123 Identities=12% Similarity=0.121 Sum_probs=71.5
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeee-cCc--ccc
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV-LDY--SEF 224 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~--~~l 224 (563)
++|.|||+|.+|...+..|...|++|++++.+ ..+... +.+ .+... ..+ +.+
T Consensus 14 ~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~--~~~~l~-----------~l~------------~i~~~~~~~~~~dl 68 (157)
T PRK06719 14 KVVVIIGGGKIAYRKASGLKDTGAFVTVVSPE--ICKEMK-----------ELP------------YITWKQKTFSNDDI 68 (157)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCc--cCHHHH-----------hcc------------CcEEEecccChhcC
Confidence 68999999999999999999999999999643 222211 001 11111 122 468
Q ss_pred cCCCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhhhccCCCceeecccCCCC--CCCCeEEEEeCCC
Q 008509 225 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPA--HVMPLLEIVRTER 302 (563)
Q Consensus 225 ~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS~l~i~~la~~~~~~~r~ig~hf~~P~--~~~~lvEiv~~~~ 302 (563)
.++|+||-|. ++.++...+... ++... ++.+.+. |+ -..|+.|. ...++.--+.+..
T Consensus 69 ~~a~lViaaT-~d~e~N~~i~~~----a~~~~-~vn~~d~------------~~---~~~f~~pa~v~~~~l~iaisT~G 127 (157)
T PRK06719 69 KDAHLIYAAT-NQHAVNMMVKQA----AHDFQ-WVNVVSD------------GT---ESSFHTPGVIRNDEYVVTISTSG 127 (157)
T ss_pred CCceEEEECC-CCHHHHHHHHHH----HHHCC-cEEECCC------------CC---cCcEEeeeEEEECCeEEEEECCC
Confidence 8999999876 455554444332 22232 2222211 11 12355554 3445555566666
Q ss_pred CCHHHHHHHHHHHH
Q 008509 303 TSAQVILDLMTVGK 316 (563)
Q Consensus 303 t~~~~~~~~~~l~~ 316 (563)
.+|.....+++-++
T Consensus 128 ~sP~la~~lr~~ie 141 (157)
T PRK06719 128 KDPSFTKRLKQELT 141 (157)
T ss_pred cChHHHHHHHHHHH
Confidence 77776666665544
No 342
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=96.18 E-value=0.028 Score=55.26 Aligned_cols=64 Identities=17% Similarity=0.171 Sum_probs=44.4
Q ss_pred eeEEEEcCCcchHHHHHHHHhCC---Ce-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCccc
Q 008509 148 RKVAVIGGGLMGSGIATAHILNN---IY-VVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE 223 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G---~~-V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 223 (563)
.||+|||.|.||..++..+...+ ++ +.+++++++..+... . .....+++++
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~-----------~--------------~~~~~~~l~~ 57 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALA-----------G--------------RVALLDGLPG 57 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhh-----------c--------------cCcccCCHHH
Confidence 68999999999999999987543 54 346777775543321 0 1234556655
Q ss_pred c--cCCCEEEEecCC
Q 008509 224 F--KDVDMVIEAVIE 236 (563)
Q Consensus 224 l--~~aDlVieav~e 236 (563)
+ ..+|+||||...
T Consensus 58 ll~~~~DlVVE~A~~ 72 (267)
T PRK13301 58 LLAWRPDLVVEAAGQ 72 (267)
T ss_pred HhhcCCCEEEECCCH
Confidence 3 789999999863
No 343
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=96.16 E-value=0.071 Score=45.66 Aligned_cols=91 Identities=22% Similarity=0.191 Sum_probs=59.3
Q ss_pred EEEEcCCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeee-cCc-----cc
Q 008509 150 VAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV-LDY-----SE 223 (563)
Q Consensus 150 v~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~-----~~ 223 (563)
|.|+|.|.+|..++..|...+.+|+++|.+++..+.+. +.|. .-+.+. ++. ..
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~-----------~~~~----------~~i~gd~~~~~~l~~a~ 59 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELR-----------EEGV----------EVIYGDATDPEVLERAG 59 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHH-----------HTTS----------EEEES-TTSHHHHHHTT
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHH-----------hccc----------ccccccchhhhHHhhcC
Confidence 57999999999999999998889999999999877653 2221 011111 111 25
Q ss_pred ccCCCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecC
Q 008509 224 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNT 262 (563)
Q Consensus 224 l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~snt 262 (563)
+.+||.||.+.+.+ +....+...+.+..+.-.+++-..
T Consensus 60 i~~a~~vv~~~~~d-~~n~~~~~~~r~~~~~~~ii~~~~ 97 (116)
T PF02254_consen 60 IEKADAVVILTDDD-EENLLIALLARELNPDIRIIARVN 97 (116)
T ss_dssp GGCESEEEEESSSH-HHHHHHHHHHHHHTTTSEEEEEES
T ss_pred ccccCEEEEccCCH-HHHHHHHHHHHHHCCCCeEEEEEC
Confidence 68899999988765 333344444555555556665433
No 344
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=96.15 E-value=0.012 Score=60.24 Aligned_cols=95 Identities=18% Similarity=0.166 Sum_probs=54.5
Q ss_pred eeEEEEcCCcchHHHHHHHHh-CCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCc-ccc
Q 008509 148 RKVAVIGGGLMGSGIATAHIL-NNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 224 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~-~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 224 (563)
++++|||+|..+..-+..++. .++ +|.+|+|++++.++..+++.+ .+ -.+....+. +++
T Consensus 129 ~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~-------~~-----------~~v~~~~~~~~av 190 (313)
T PF02423_consen 129 RTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRD-------LG-----------VPVVAVDSAEEAV 190 (313)
T ss_dssp -EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHC-------CC-----------TCEEEESSHHHHH
T ss_pred ceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhcc-------cc-----------ccceeccchhhhc
Confidence 579999999999988887754 344 899999999988775543321 01 135556666 588
Q ss_pred cCCCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCCC
Q 008509 225 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 264 (563)
Q Consensus 225 ~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS~ 264 (563)
++||+|+.|.+..... .++. .+.+++++.|.+..|.
T Consensus 191 ~~aDii~taT~s~~~~--P~~~--~~~l~~g~hi~~iGs~ 226 (313)
T PF02423_consen 191 RGADIIVTATPSTTPA--PVFD--AEWLKPGTHINAIGSY 226 (313)
T ss_dssp TTSSEEEE----SSEE--ESB---GGGS-TT-EEEE-S-S
T ss_pred ccCCEEEEccCCCCCC--cccc--HHHcCCCcEEEEecCC
Confidence 9999999998865410 1111 2356788877665554
No 345
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=96.14 E-value=0.006 Score=60.90 Aligned_cols=68 Identities=18% Similarity=0.176 Sum_probs=43.3
Q ss_pred eeEEEEcCCcchHHHHHHHHhC-CCeEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCcccc-
Q 008509 148 RKVAVIGGGLMGSGIATAHILN-NIYVVLK-EVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF- 224 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~-G~~V~l~-d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l- 224 (563)
.||+|||+|.||..++..+.+. +.++..+ +++.. .++.. . .... .+..++|++++
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~-~~~~~----~----~~~~-------------~~~~~~d~~~l~ 59 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHS-IDAVR----R----ALGE-------------AVRVVSSVDALP 59 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCC-HHHHh----h----hhcc-------------CCeeeCCHHHhc
Confidence 5899999999999999999876 5665543 33221 11110 0 0000 13445666654
Q ss_pred cCCCEEEEecCCC
Q 008509 225 KDVDMVIEAVIES 237 (563)
Q Consensus 225 ~~aDlVieav~e~ 237 (563)
.+.|+||||.+..
T Consensus 60 ~~~DvVve~t~~~ 72 (265)
T PRK13303 60 QRPDLVVECAGHA 72 (265)
T ss_pred cCCCEEEECCCHH
Confidence 5689999999865
No 346
>PRK07589 ornithine cyclodeaminase; Validated
Probab=96.09 E-value=0.04 Score=56.97 Aligned_cols=96 Identities=15% Similarity=0.189 Sum_probs=61.9
Q ss_pred ceeEEEEcCCcchHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCc-cc
Q 008509 147 VRKVAVIGGGLMGSGIATAHIL--NNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 223 (563)
Q Consensus 147 ~~kv~ViGaG~mG~~iA~~la~--~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 223 (563)
.++++|||+|..+..-+..++. .--+|.+|++++++.+...+++.+ .+ + .+...++. ++
T Consensus 129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~-------~~-~----------~v~~~~~~~~a 190 (346)
T PRK07589 129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAG-------PG-L----------RIVACRSVAEA 190 (346)
T ss_pred CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHh-------cC-C----------cEEEeCCHHHH
Confidence 4789999999999887765543 234899999999988775543321 11 0 24445565 57
Q ss_pred ccCCCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCCC
Q 008509 224 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 264 (563)
Q Consensus 224 l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS~ 264 (563)
+++||+|+.|.+.... ..+|. .+.+++++.|....|.
T Consensus 191 v~~ADIIvtaT~S~~~--~Pvl~--~~~lkpG~hV~aIGs~ 227 (346)
T PRK07589 191 VEGADIITTVTADKTN--ATILT--DDMVEPGMHINAVGGD 227 (346)
T ss_pred HhcCCEEEEecCCCCC--Cceec--HHHcCCCcEEEecCCC
Confidence 8999999999874310 01111 1345788876655543
No 347
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=96.07 E-value=0.027 Score=61.12 Aligned_cols=41 Identities=24% Similarity=0.105 Sum_probs=37.3
Q ss_pred ceeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHH
Q 008509 147 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGI 187 (563)
Q Consensus 147 ~~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (563)
-.+|.|+|+|.+|...++.+...|.+|+++|+++++++.+.
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~ae 205 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVE 205 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 36899999999999999999999999999999999887754
No 348
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=96.05 E-value=0.074 Score=54.19 Aligned_cols=66 Identities=21% Similarity=0.268 Sum_probs=45.0
Q ss_pred eeEEEEcCCcchHHHHHHHHhC-CCeEE-EEeCCH-HHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCc-cc
Q 008509 148 RKVAVIGGGLMGSGIATAHILN-NIYVV-LKEVNS-EYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 223 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~-G~~V~-l~d~~~-~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 223 (563)
-||+|||.|.||..++..+.++ +++++ ++|+++ +.+.. ..+ +..+.+. +.
T Consensus 4 IRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~~-------------~~~-------------v~~~~d~~e~ 57 (324)
T TIGR01921 4 IRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLDT-------------ETP-------------VYAVADDEKH 57 (324)
T ss_pred cEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHhh-------------cCC-------------ccccCCHHHh
Confidence 5899999999999999988765 78877 579985 32211 001 1112232 34
Q ss_pred ccCCCEEEEecCCChH
Q 008509 224 FKDVDMVIEAVIESVP 239 (563)
Q Consensus 224 l~~aDlVieav~e~~~ 239 (563)
+.++|+|+.|.|....
T Consensus 58 l~~iDVViIctPs~th 73 (324)
T TIGR01921 58 LDDVDVLILCMGSATD 73 (324)
T ss_pred ccCCCEEEEcCCCccC
Confidence 5788999999887654
No 349
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=96.04 E-value=0.0079 Score=63.78 Aligned_cols=69 Identities=19% Similarity=0.161 Sum_probs=49.1
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCc-cccc
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 225 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 225 (563)
++|.|||+|-||..++..|+..|. ++++++|+.++.+...+. + ..+ .....+++ +.+.
T Consensus 182 kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~----~----~~~------------~~~~~~~l~~~l~ 241 (414)
T PRK13940 182 KNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSA----F----RNA------------SAHYLSELPQLIK 241 (414)
T ss_pred CEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHH----h----cCC------------eEecHHHHHHHhc
Confidence 589999999999999999999996 799999998876543221 1 001 01111222 5678
Q ss_pred CCCEEEEecCC
Q 008509 226 DVDMVIEAVIE 236 (563)
Q Consensus 226 ~aDlVieav~e 236 (563)
++|+||.|++.
T Consensus 242 ~aDiVI~aT~a 252 (414)
T PRK13940 242 KADIIIAAVNV 252 (414)
T ss_pred cCCEEEECcCC
Confidence 89999998864
No 350
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=96.03 E-value=0.0088 Score=62.62 Aligned_cols=39 Identities=26% Similarity=0.231 Sum_probs=35.5
Q ss_pred eeEEEEcCCcchHHHHHHHHhCC-CeEEEEeCCHHHHHHH
Q 008509 148 RKVAVIGGGLMGSGIATAHILNN-IYVVLKEVNSEYLLKG 186 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G-~~V~l~d~~~~~~~~~ 186 (563)
++|.|||+|-||...|.+|+.+| .+|++.+|+.++.+..
T Consensus 179 ~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~L 218 (414)
T COG0373 179 KKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEEL 218 (414)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHH
Confidence 57999999999999999999999 5899999999987764
No 351
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=96.01 E-value=0.018 Score=57.58 Aligned_cols=74 Identities=15% Similarity=0.207 Sum_probs=51.8
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHhhhcCeeeecCccccc
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGK-LTQDKANNALKMLKGVLDYSEFK 225 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~-~~~~~~~~~~~~i~~~~~~~~l~ 225 (563)
++|.|+|+|-++.+++..|+..|. +|++++|+.++.++..+...+ .+. +. .....+.+...
T Consensus 127 ~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~-------~~~~~~----------~~~~~~~~~~~ 189 (283)
T COG0169 127 KRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGE-------LGAAVE----------AAALADLEGLE 189 (283)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhh-------cccccc----------ccccccccccc
Confidence 689999999999999999999995 799999999987765432221 110 00 01112223333
Q ss_pred CCCEEEEecCCCh
Q 008509 226 DVDMVIEAVIESV 238 (563)
Q Consensus 226 ~aDlVieav~e~~ 238 (563)
++|+||.|+|-.+
T Consensus 190 ~~dliINaTp~Gm 202 (283)
T COG0169 190 EADLLINATPVGM 202 (283)
T ss_pred ccCEEEECCCCCC
Confidence 7899999998664
No 352
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=95.98 E-value=0.032 Score=45.28 Aligned_cols=32 Identities=34% Similarity=0.412 Sum_probs=28.7
Q ss_pred ceeEEEEcCCcchHHHHHHHHhC-CCeEEEEeC
Q 008509 147 VRKVAVIGGGLMGSGIATAHILN-NIYVVLKEV 178 (563)
Q Consensus 147 ~~kv~ViGaG~mG~~iA~~la~~-G~~V~l~d~ 178 (563)
-++++|+|+|.+|.+++..+... +.+|++||+
T Consensus 23 ~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 23 GKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 36899999999999999999998 678999886
No 353
>PRK06153 hypothetical protein; Provisional
Probab=95.97 E-value=0.015 Score=60.17 Aligned_cols=32 Identities=25% Similarity=0.267 Sum_probs=29.9
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCC-eEEEEeCC
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVN 179 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~-~V~l~d~~ 179 (563)
.+|+|||+|-.|+.++..|++.|+ +++++|-|
T Consensus 177 ~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D 209 (393)
T PRK06153 177 QRIAIIGLGGTGSYILDLVAKTPVREIHLFDGD 209 (393)
T ss_pred CcEEEEcCCccHHHHHHHHHHcCCCEEEEECCC
Confidence 479999999999999999999998 89999986
No 354
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=95.94 E-value=0.027 Score=56.18 Aligned_cols=32 Identities=34% Similarity=0.436 Sum_probs=26.2
Q ss_pred eeEEEEc-CCcchHHHHHHHHh-CCCeEE-EEeCC
Q 008509 148 RKVAVIG-GGLMGSGIATAHIL-NNIYVV-LKEVN 179 (563)
Q Consensus 148 ~kv~ViG-aG~mG~~iA~~la~-~G~~V~-l~d~~ 179 (563)
.||+|+| +|.||..++..+.. .+++++ ++|++
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~ 36 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERH 36 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecC
Confidence 4899999 59999999999986 488766 57743
No 355
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.89 E-value=0.027 Score=56.38 Aligned_cols=72 Identities=18% Similarity=0.263 Sum_probs=54.4
Q ss_pred eeEEEEcCCc-chHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCcccccC
Q 008509 148 RKVAVIGGGL-MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 226 (563)
Q Consensus 148 ~kv~ViGaG~-mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 226 (563)
++|.|||.|. +|..+|..|.+.|..|+++++....+. +.+++
T Consensus 159 k~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t~~l~-------------------------------------~~~~~ 201 (286)
T PRK14175 159 KNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRSKDMA-------------------------------------SYLKD 201 (286)
T ss_pred CEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCchhHH-------------------------------------HHHhh
Confidence 6899999977 999999999999999999987532111 24678
Q ss_pred CCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCC
Q 008509 227 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 263 (563)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS 263 (563)
||+||.|++..--+.. ..+++++++.+..+
T Consensus 202 ADIVIsAvg~p~~i~~-------~~vk~gavVIDvGi 231 (286)
T PRK14175 202 ADVIVSAVGKPGLVTK-------DVVKEGAVIIDVGN 231 (286)
T ss_pred CCEEEECCCCCcccCH-------HHcCCCcEEEEcCC
Confidence 9999999975422222 24688898887654
No 356
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=95.79 E-value=0.018 Score=46.04 Aligned_cols=35 Identities=37% Similarity=0.470 Sum_probs=32.6
Q ss_pred eEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHHHH
Q 008509 149 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYL 183 (563)
Q Consensus 149 kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~~ 183 (563)
||.|||+|..|.-+|..++..|.+|+++++++.-.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence 68999999999999999999999999999987655
No 357
>PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=95.79 E-value=0.39 Score=46.99 Aligned_cols=109 Identities=16% Similarity=0.110 Sum_probs=75.0
Q ss_pred eee-ecCcccccCCCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhhhc---cC-CCceeecccCCCC
Q 008509 215 LKG-VLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKT---SS-QDRIIGAHFFSPA 289 (563)
Q Consensus 215 i~~-~~~~~~l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS~l~i~~la~~~---~~-~~r~ig~hf~~P~ 289 (563)
+.. ++|.++++++|++|.-.|.--. --.+.+++.+++++++|| +||-++|...+...+ ++ .-.+..+||-. +
T Consensus 129 vkVtsDD~EAvk~aei~I~ftPfG~~-t~~Iikki~~~ipEgAII-~~tCTIpt~~ly~~le~l~R~DvgIsS~HPaa-V 205 (342)
T PRK00961 129 LKVTTDDREAVADADIVITWLPKGGM-QPDIIEKFADDIKEGAIV-THACTIPTTKFAKIFKDLGRDDLNVTSYHPGA-V 205 (342)
T ss_pred ceEecCcHHHhcCCCEEEEecCCCCC-chHHHHHHHhhCCCCCEE-eccccCCHHHHHHHHHHhCcccCCeeccCCCC-C
Confidence 444 4566899999999999986531 236788899999999987 566777776655443 32 22444556533 1
Q ss_pred CCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCceEEec
Q 008509 290 HVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVG 326 (563)
Q Consensus 290 ~~~~lvEiv~~~~t~~~~~~~~~~l~~~lGk~~v~~~ 326 (563)
+.++.--.+.....+++.++.+.++.+..|+.+.++.
T Consensus 206 Pgt~Gq~~i~egyAtEEqI~klveL~~sa~k~ay~~P 242 (342)
T PRK00961 206 PEMKGQVYIAEGYADEEAVEKLYEIGKKARGNAFKMP 242 (342)
T ss_pred CCCCCceecccccCCHHHHHHHHHHHHHhCCCeeecc
Confidence 2333222333445689999999999999999999873
No 358
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=95.77 E-value=0.012 Score=58.25 Aligned_cols=92 Identities=24% Similarity=0.278 Sum_probs=65.3
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeee--ec--Cc-c
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG--VL--DY-S 222 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~--~~--~~-~ 222 (563)
.+|+|||.|..|.--|....--|-+|++.|+|.+++...-. .. ..|+.. ++ ++ +
T Consensus 169 ~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd--------~f-------------~~rv~~~~st~~~iee 227 (371)
T COG0686 169 AKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDD--------LF-------------GGRVHTLYSTPSNIEE 227 (371)
T ss_pred ccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhH--------hh-------------CceeEEEEcCHHHHHH
Confidence 68999999999999999988899999999999988765211 11 012221 11 22 5
Q ss_pred cccCCCEEEEec--CCChHHHHHHHHHHHhhCCCCeEEEec
Q 008509 223 EFKDVDMVIEAV--IESVPLKQKIFSELEKACPPHCILATN 261 (563)
Q Consensus 223 ~l~~aDlVieav--~e~~~~k~~v~~~l~~~~~~~~ii~sn 261 (563)
.+..+|+||-+| |... .-+-+.++..+.++++++|++.
T Consensus 228 ~v~~aDlvIgaVLIpgak-aPkLvt~e~vk~MkpGsVivDV 267 (371)
T COG0686 228 AVKKADLVIGAVLIPGAK-APKLVTREMVKQMKPGSVIVDV 267 (371)
T ss_pred HhhhccEEEEEEEecCCC-CceehhHHHHHhcCCCcEEEEE
Confidence 789999999887 2211 1124567778889999988763
No 359
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=95.77 E-value=0.021 Score=51.19 Aligned_cols=31 Identities=26% Similarity=0.401 Sum_probs=29.2
Q ss_pred eEEEEcCCcchHHHHHHHHhCCC-eEEEEeCC
Q 008509 149 KVAVIGGGLMGSGIATAHILNNI-YVVLKEVN 179 (563)
Q Consensus 149 kv~ViGaG~mG~~iA~~la~~G~-~V~l~d~~ 179 (563)
+|.|||+|.+|+.++..|++.|+ +++++|.+
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d 32 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFD 32 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 58999999999999999999998 79999987
No 360
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=95.77 E-value=0.081 Score=59.25 Aligned_cols=95 Identities=19% Similarity=0.196 Sum_probs=65.6
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeee-cCc-----
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV-LDY----- 221 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~----- 221 (563)
.+|.|+|.|.+|..++..|.+.|++|+++|.|+++++.+.+ .|. .-+.+. ++.
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~-----------~g~----------~v~~GDat~~~~L~~ 459 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRK-----------YGY----------KVYYGDATQLELLRA 459 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh-----------CCC----------eEEEeeCCCHHHHHh
Confidence 58999999999999999999999999999999998876531 221 001111 111
Q ss_pred ccccCCCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCCC
Q 008509 222 SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 264 (563)
Q Consensus 222 ~~l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS~ 264 (563)
..+.+||.||.+++++.+ ...+...+.+..++-.|++-..+.
T Consensus 460 agi~~A~~vv~~~~d~~~-n~~i~~~~r~~~p~~~IiaRa~~~ 501 (601)
T PRK03659 460 AGAEKAEAIVITCNEPED-TMKIVELCQQHFPHLHILARARGR 501 (601)
T ss_pred cCCccCCEEEEEeCCHHH-HHHHHHHHHHHCCCCeEEEEeCCH
Confidence 246899999999987643 334444555555555677654443
No 361
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=95.75 E-value=0.14 Score=49.14 Aligned_cols=131 Identities=21% Similarity=0.244 Sum_probs=81.5
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCcccccCC
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 227 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 227 (563)
++|.|||+|..|.-=+..|++.|-+|+++..+. ... +..+.+.+.+.. +...-+.+.+.++
T Consensus 13 k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~--~~e--------l~~~~~~~~i~~---------~~~~~~~~~~~~~ 73 (210)
T COG1648 13 KKVLVVGGGSVALRKARLLLKAGADVTVVSPEF--EPE--------LKALIEEGKIKW---------IEREFDAEDLDDA 73 (210)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCc--cHH--------HHHHHHhcCcch---------hhcccChhhhcCc
Confidence 589999999999999999999999999998776 111 122233333221 1112233566779
Q ss_pred CEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhhhccCCCceeecccCCCC--CCCCeEEEEeCCCCCH
Q 008509 228 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPA--HVMPLLEIVRTERTSA 305 (563)
Q Consensus 228 DlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS~l~i~~la~~~~~~~r~ig~hf~~P~--~~~~lvEiv~~~~t~~ 305 (563)
++||-|+. |.++.+.++....+ ..+++. . ...|+. ++|+.|. +..++.--|.+...+|
T Consensus 74 ~lviaAt~-d~~ln~~i~~~a~~----~~i~vN-v-----------~D~p~~---~~f~~Pa~~~r~~l~iaIsT~G~sP 133 (210)
T COG1648 74 FLVIAATD-DEELNERIAKAARE----RRILVN-V-----------VDDPEL---CDFIFPAIVDRGPLQIAISTGGKSP 133 (210)
T ss_pred eEEEEeCC-CHHHHHHHHHHHHH----hCCcee-c-----------cCCccc---CceecceeeccCCeEEEEECCCCCh
Confidence 99999875 55666666554433 334332 2 122322 4565665 3566777777777777
Q ss_pred HHHHHHHHHHHH
Q 008509 306 QVILDLMTVGKI 317 (563)
Q Consensus 306 ~~~~~~~~l~~~ 317 (563)
.....++.-.+.
T Consensus 134 ~la~~ir~~Ie~ 145 (210)
T COG1648 134 VLARLLREKIEA 145 (210)
T ss_pred HHHHHHHHHHHH
Confidence 766666655544
No 362
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=95.74 E-value=0.0083 Score=63.40 Aligned_cols=38 Identities=26% Similarity=0.302 Sum_probs=32.0
Q ss_pred EEEEcCCcchHHHHHHHHhCC-C-eEEEEeCCHHHHHHHH
Q 008509 150 VAVIGGGLMGSGIATAHILNN-I-YVVLKEVNSEYLLKGI 187 (563)
Q Consensus 150 v~ViGaG~mG~~iA~~la~~G-~-~V~l~d~~~~~~~~~~ 187 (563)
|.|||+|.+|+.++..|++.+ + +|++.|++.+++++..
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~ 40 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLA 40 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHH
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHH
Confidence 789999999999999999986 4 8999999999877643
No 363
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=95.69 E-value=0.079 Score=58.86 Aligned_cols=92 Identities=15% Similarity=0.184 Sum_probs=62.1
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeee-cCc-----
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV-LDY----- 221 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~----- 221 (563)
.+|.|+|.|.+|..+|..|.+.|++|+++|.|+++++.+.+ .|. .-+.+. ++.
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~-----------~g~----------~~i~GD~~~~~~L~~ 476 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRE-----------RGI----------RAVLGNAANEEIMQL 476 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH-----------CCC----------eEEEcCCCCHHHHHh
Confidence 68999999999999999999999999999999998776531 121 001110 111
Q ss_pred ccccCCCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEec
Q 008509 222 SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATN 261 (563)
Q Consensus 222 ~~l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sn 261 (563)
..+++||.||.+++++.+.. .+...+.+..+.-.|++-.
T Consensus 477 a~i~~a~~viv~~~~~~~~~-~iv~~~~~~~~~~~iiar~ 515 (558)
T PRK10669 477 AHLDCARWLLLTIPNGYEAG-EIVASAREKRPDIEIIARA 515 (558)
T ss_pred cCccccCEEEEEcCChHHHH-HHHHHHHHHCCCCeEEEEE
Confidence 24679999999998875433 2333344444444566543
No 364
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=95.67 E-value=0.073 Score=57.63 Aligned_cols=41 Identities=24% Similarity=0.118 Sum_probs=36.7
Q ss_pred ceeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHH
Q 008509 147 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGI 187 (563)
Q Consensus 147 ~~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (563)
-.+|.|+|+|.+|...+..+...|..|+++|+++++++.+.
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~ 204 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQ 204 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 37999999999999999999999999999999999876643
No 365
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=95.58 E-value=0.039 Score=58.13 Aligned_cols=39 Identities=26% Similarity=0.296 Sum_probs=33.5
Q ss_pred eeEEEEcCCcchHHH-HHHHHhCCCeEEEEeCCHHHHHHH
Q 008509 148 RKVAVIGGGLMGSGI-ATAHILNNIYVVLKEVNSEYLLKG 186 (563)
Q Consensus 148 ~kv~ViGaG~mG~~i-A~~la~~G~~V~l~d~~~~~~~~~ 186 (563)
+||.++|+|.||++. ...|.++|++|+++|++++.++..
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~g~~V~~vd~~~~~v~aL 40 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADNGFEVTFVDVNQELIDAL 40 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhCCCeEEEEECCHHHHHHH
Confidence 479999999999865 788889999999999988866654
No 366
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=95.57 E-value=0.045 Score=57.50 Aligned_cols=76 Identities=20% Similarity=0.209 Sum_probs=52.0
Q ss_pred ceeEEEEcCCcchHHHHH--HHHh----CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecC
Q 008509 147 VRKVAVIGGGLMGSGIAT--AHIL----NNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD 220 (563)
Q Consensus 147 ~~kv~ViGaG~mG~~iA~--~la~----~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~ 220 (563)
..||+|||+|+.+...-. .+.+ .+.++.++|+++++++. +....++.+++-..+ -++..++|
T Consensus 3 ~~KI~iIGgGSt~tp~~v~g~l~~~e~l~~~el~L~Did~~r~~~----i~~~~~~~v~~~g~~--------~kv~~ttd 70 (442)
T COG1486 3 KFKIVIIGGGSTYTPKLLLGDLARTEELPVRELALYDIDEERLKI----IAILAKKLVEEAGAP--------VKVEATTD 70 (442)
T ss_pred cceEEEECCCccccHHHHHHHHhcCccCCcceEEEEeCCHHHHHH----HHHHHHHHHHhhCCC--------eEEEEecC
Confidence 358999999988765432 2222 25689999999998773 333444444432221 25777888
Q ss_pred c-ccccCCCEEEEec
Q 008509 221 Y-SEFKDVDMVIEAV 234 (563)
Q Consensus 221 ~-~~l~~aDlVieav 234 (563)
. +++++||+||.++
T Consensus 71 ~~eAl~gAdfVi~~~ 85 (442)
T COG1486 71 RREALEGADFVITQI 85 (442)
T ss_pred HHHHhcCCCEEEEEE
Confidence 8 6999999999876
No 367
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=95.57 E-value=0.024 Score=55.17 Aligned_cols=32 Identities=22% Similarity=0.343 Sum_probs=30.1
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCCe---EEEEeCC
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNIY---VVLKEVN 179 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~~---V~l~d~~ 179 (563)
++|.|+|+|.+|.++|..|...|.. |+++|++
T Consensus 26 ~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~ 60 (226)
T cd05311 26 VKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK 60 (226)
T ss_pred CEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence 5899999999999999999999985 9999998
No 368
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=95.57 E-value=0.031 Score=57.81 Aligned_cols=33 Identities=21% Similarity=0.414 Sum_probs=31.0
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCC-eEEEEeCCH
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS 180 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~ 180 (563)
.+|.|||+|.+|+.+|..|+.+|+ +++++|.+.
T Consensus 25 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 25 KHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 579999999999999999999999 999999974
No 369
>PRK06270 homoserine dehydrogenase; Provisional
Probab=95.56 E-value=0.041 Score=57.05 Aligned_cols=22 Identities=36% Similarity=0.469 Sum_probs=19.7
Q ss_pred eeEEEEcCCcchHHHHHHHHhC
Q 008509 148 RKVAVIGGGLMGSGIATAHILN 169 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~ 169 (563)
-+|+|+|+|.||..++..+...
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~ 24 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEK 24 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHh
Confidence 4799999999999999988765
No 370
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.56 E-value=0.083 Score=56.46 Aligned_cols=37 Identities=30% Similarity=0.452 Sum_probs=33.5
Q ss_pred ceeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHHHH
Q 008509 147 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYL 183 (563)
Q Consensus 147 ~~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~~ 183 (563)
.++|.|||.|.+|.++|..|.+.|++|+++|++++.+
T Consensus 3 ~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~ 39 (418)
T PRK00683 3 LQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEAL 39 (418)
T ss_pred CCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCcccc
Confidence 4689999999999999999999999999999887643
No 371
>PRK06199 ornithine cyclodeaminase; Validated
Probab=95.54 E-value=0.042 Score=57.68 Aligned_cols=75 Identities=17% Similarity=0.152 Sum_probs=53.3
Q ss_pred ceeEEEEcCCcchHHHHHHHHhC--CC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCc-c
Q 008509 147 VRKVAVIGGGLMGSGIATAHILN--NI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S 222 (563)
Q Consensus 147 ~~kv~ViGaG~mG~~iA~~la~~--G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 222 (563)
.++++|||+|.++......++.- .+ +|.+|+|++++.++..+++.+.+ . |. ..+..+.+. +
T Consensus 155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~----~-~~----------~~v~~~~s~~e 219 (379)
T PRK06199 155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETY----P-QI----------TNVEVVDSIEE 219 (379)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhc----C-CC----------ceEEEeCCHHH
Confidence 47899999999999999888762 24 89999999999877554332211 0 10 014455565 5
Q ss_pred cccCCCEEEEecCC
Q 008509 223 EFKDVDMVIEAVIE 236 (563)
Q Consensus 223 ~l~~aDlVieav~e 236 (563)
++++||+|+.|.+.
T Consensus 220 av~~ADIVvtaT~s 233 (379)
T PRK06199 220 VVRGSDIVTYCNSG 233 (379)
T ss_pred HHcCCCEEEEccCC
Confidence 78999999988863
No 372
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=95.53 E-value=0.072 Score=57.48 Aligned_cols=39 Identities=23% Similarity=0.285 Sum_probs=35.7
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHHHHHHH
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKG 186 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 186 (563)
++|.|+|+|.+|..++..|...|++|+++|++++.++..
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~ 39 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRL 39 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHH
Confidence 479999999999999999999999999999999987654
No 373
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.51 E-value=0.042 Score=55.18 Aligned_cols=70 Identities=17% Similarity=0.243 Sum_probs=51.4
Q ss_pred eeEEEEcCCc-chHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCcccccC
Q 008509 148 RKVAVIGGGL-MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 226 (563)
Q Consensus 148 ~kv~ViGaG~-mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 226 (563)
++|.|||.|. .|.++|..|.+.|..|+++++....+. +.+++
T Consensus 160 k~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t~~L~-------------------------------------~~~~~ 202 (283)
T PRK14192 160 KHAVVVGRSAILGKPMAMMLLNANATVTICHSRTQNLP-------------------------------------ELVKQ 202 (283)
T ss_pred CEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCchhHH-------------------------------------HHhcc
Confidence 5899999996 999999999999999999997432211 12478
Q ss_pred CCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEec
Q 008509 227 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATN 261 (563)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sn 261 (563)
||+||.|++...-+. .+.+++++++.+.
T Consensus 203 aDIvI~AtG~~~~v~-------~~~lk~gavViDv 230 (283)
T PRK14192 203 ADIIVGAVGKPELIK-------KDWIKQGAVVVDA 230 (283)
T ss_pred CCEEEEccCCCCcCC-------HHHcCCCCEEEEE
Confidence 999999995322111 1346788887654
No 374
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=95.51 E-value=0.17 Score=54.61 Aligned_cols=41 Identities=27% Similarity=0.283 Sum_probs=37.2
Q ss_pred cceeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHHHHHHH
Q 008509 146 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKG 186 (563)
Q Consensus 146 ~~~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 186 (563)
..++|.|+|+|.+|..++..|...|++|+++|.+++..+..
T Consensus 230 ~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~ 270 (453)
T PRK09496 230 PVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEEL 270 (453)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHH
Confidence 35789999999999999999999999999999999987654
No 375
>TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase. This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201.
Probab=95.48 E-value=0.67 Score=45.49 Aligned_cols=106 Identities=15% Similarity=0.126 Sum_probs=72.5
Q ss_pred ecCcccccCCCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhhh---ccC-CCceeecccCCCCCCCC
Q 008509 218 VLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEK---TSS-QDRIIGAHFFSPAHVMP 293 (563)
Q Consensus 218 ~~~~~~l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS~l~i~~la~~---~~~-~~r~ig~hf~~P~~~~~ 293 (563)
++|.++++++|++|.-.|.--. --.+.+++.+++++++|| +||-++|...+... +++ .-.+..+||-.- +.++
T Consensus 131 sDD~EAv~~aei~I~ftPfG~~-q~~Iikkii~~lpEgAII-~~tCTIpt~~ly~ilE~l~R~DvgVsS~HPaaV-Pgt~ 207 (340)
T TIGR01723 131 TDDREAVEDADIIITWLPKGNK-QPDIIKKFIDDIPEGAIV-THACTIPTTKFAKIFEDLGREDLNVTSYHPGCV-PEMK 207 (340)
T ss_pred cCcHHHhcCCCEEEEEcCCCCC-chHHHHHHHhhCCCCCEE-eccccCChHHHHHHHHhhCcccCCeeccCCCCC-CCCC
Confidence 4566899999999999986531 236788899999999987 46667776654443 332 224445565431 2232
Q ss_pred eEEEEeCCCCCHHHHHHHHHHHHHhCCceEEec
Q 008509 294 LLEIVRTERTSAQVILDLMTVGKIIKKVPVVVG 326 (563)
Q Consensus 294 lvEiv~~~~t~~~~~~~~~~l~~~lGk~~v~~~ 326 (563)
---++.....+++.++.+.++.+..|+.+..+.
T Consensus 208 ~q~Yi~egyAtEEqI~klveL~~sa~k~ay~~P 240 (340)
T TIGR01723 208 GQVYIAEGYASEEAVNKLYELGKKARGKAFKMP 240 (340)
T ss_pred CceEeecccCCHHHHHHHHHHHHHhCCCeeecc
Confidence 212223345688999999999999999999873
No 376
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=95.47 E-value=0.018 Score=57.90 Aligned_cols=40 Identities=15% Similarity=0.270 Sum_probs=35.6
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCC-eEEEEeCCHHHHHHHH
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGI 187 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~ 187 (563)
++|.|+|+|-.|++++..|+..|. +|+++||+.++.+...
T Consensus 128 k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La 168 (283)
T PRK14027 128 DSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALA 168 (283)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHH
Confidence 579999999999999999999997 7999999998776543
No 377
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=95.39 E-value=0.016 Score=61.75 Aligned_cols=33 Identities=27% Similarity=0.341 Sum_probs=31.5
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCH
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNS 180 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~ 180 (563)
.+|.|||+|.+|.++|..|++.|++|+++|++.
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 589999999999999999999999999999975
No 378
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=95.33 E-value=0.14 Score=57.47 Aligned_cols=93 Identities=14% Similarity=0.204 Sum_probs=63.0
Q ss_pred ceeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeee-ecCc----
Q 008509 147 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-VLDY---- 221 (563)
Q Consensus 147 ~~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~---- 221 (563)
-++|.|+|.|.+|..+++.|.++|++|+++|.|+++++...+ .|. .-+.+ .++.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~-----------~g~----------~v~~GDat~~~~L~ 458 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRK-----------FGM----------KVFYGDATRMDLLE 458 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh-----------cCC----------eEEEEeCCCHHHHH
Confidence 368999999999999999999999999999999998877532 121 00111 1122
Q ss_pred -ccccCCCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEec
Q 008509 222 -SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATN 261 (563)
Q Consensus 222 -~~l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sn 261 (563)
..+.+||+||.++.++. ....+...+.++.++-.|++-.
T Consensus 459 ~agi~~A~~vvv~~~d~~-~n~~i~~~ar~~~p~~~iiaRa 498 (621)
T PRK03562 459 SAGAAKAEVLINAIDDPQ-TSLQLVELVKEHFPHLQIIARA 498 (621)
T ss_pred hcCCCcCCEEEEEeCCHH-HHHHHHHHHHHhCCCCeEEEEE
Confidence 34679999999986543 3334444455555544566543
No 379
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=95.30 E-value=0.067 Score=45.09 Aligned_cols=72 Identities=19% Similarity=0.391 Sum_probs=49.2
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeee-cCc-cccc
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV-LDY-SEFK 225 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~-~~l~ 225 (563)
++|.|||+|.+|..=+..|++.|.+|+++..+.+..+ +. ++.. ..+ +.+.
T Consensus 8 ~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~~~~~----------------~~------------i~~~~~~~~~~l~ 59 (103)
T PF13241_consen 8 KRVLVVGGGPVAARKARLLLEAGAKVTVISPEIEFSE----------------GL------------IQLIRREFEEDLD 59 (103)
T ss_dssp -EEEEEEESHHHHHHHHHHCCCTBEEEEEESSEHHHH----------------TS------------CEEEESS-GGGCT
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhhhh----------------hH------------HHHHhhhHHHHHh
Confidence 6899999999999999999999999999999861111 11 1111 122 5688
Q ss_pred CCCEEEEecCCChHHHHHHHHHH
Q 008509 226 DVDMVIEAVIESVPLKQKIFSEL 248 (563)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~~~l 248 (563)
++|+||.|. ++.++.+.+....
T Consensus 60 ~~~lV~~at-~d~~~n~~i~~~a 81 (103)
T PF13241_consen 60 GADLVFAAT-DDPELNEAIYADA 81 (103)
T ss_dssp TESEEEE-S-S-HHHHHHHHHHH
T ss_pred hheEEEecC-CCHHHHHHHHHHH
Confidence 999999765 4566665555543
No 380
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=95.23 E-value=0.086 Score=54.62 Aligned_cols=106 Identities=15% Similarity=0.064 Sum_probs=57.0
Q ss_pred eeEEEEcCCcchHHHHHHHHhC-CCeEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhh-hcCeeeecCcc-c
Q 008509 148 RKVAVIGGGLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNA-LKMLKGVLDYS-E 223 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~-~~~i~~~~~~~-~ 223 (563)
.||+|+|+|.||..++..+... +++|+ +.|.+++......+.. .++ -.+.+. ...... -..+....+++ .
T Consensus 2 ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~--G~~---~~~~~~-~~~~~~~~~~i~V~~~~~el 75 (341)
T PRK04207 2 IKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEK--GYP---LYVADP-EREKAFEEAGIPVAGTIEDL 75 (341)
T ss_pred eEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhc--CCC---ccccCc-cccccccCCceEEcCChhHh
Confidence 5899999999999999988754 67766 4565654333211100 000 000000 000000 01233344443 4
Q ss_pred ccCCCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCCC
Q 008509 224 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 264 (563)
Q Consensus 224 l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS~ 264 (563)
+.++|+||+|.+..... +.. ..++..++.+++|+|.
T Consensus 76 ~~~vDVVIdaT~~~~~~--e~a---~~~~~aGk~VI~~~~~ 111 (341)
T PRK04207 76 LEKADIVVDATPGGVGA--KNK---ELYEKAGVKAIFQGGE 111 (341)
T ss_pred hccCCEEEECCCchhhH--HHH---HHHHHCCCEEEEcCCC
Confidence 57899999999866432 222 3344456767777664
No 381
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=95.13 E-value=0.071 Score=53.85 Aligned_cols=34 Identities=15% Similarity=0.319 Sum_probs=31.2
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCC-eEEEEeCCHH
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSE 181 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~~ 181 (563)
+++.|||+|-.+++|+..++..|. +|++++|+++
T Consensus 125 k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~ 159 (288)
T PRK12749 125 KTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDE 159 (288)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCcc
Confidence 579999999999999999999997 8999999965
No 382
>PRK08223 hypothetical protein; Validated
Probab=95.13 E-value=0.048 Score=54.56 Aligned_cols=33 Identities=18% Similarity=0.163 Sum_probs=30.2
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCC-eEEEEeCCH
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS 180 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~ 180 (563)
.+|.|||+|-.|+.++..|+.+|+ +++++|-|.
T Consensus 28 s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~ 61 (287)
T PRK08223 28 SRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDV 61 (287)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 579999999999999999999998 799999864
No 383
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.09 E-value=1.3 Score=44.69 Aligned_cols=39 Identities=18% Similarity=0.182 Sum_probs=30.6
Q ss_pred ceeEEEEcCCcchHHHHHHHHhC-CCeEEEEeCCHHHHHHH
Q 008509 147 VRKVAVIGGGLMGSGIATAHILN-NIYVVLKEVNSEYLLKG 186 (563)
Q Consensus 147 ~~kv~ViGaG~mG~~iA~~la~~-G~~V~l~d~~~~~~~~~ 186 (563)
=++|+|+|+|-.| .+|..++++ |++|+++|++..+-+++
T Consensus 182 G~~vgI~GlGGLG-h~aVq~AKAMG~rV~vis~~~~kkeea 221 (360)
T KOG0023|consen 182 GKWVGIVGLGGLG-HMAVQYAKAMGMRVTVISTSSKKKEEA 221 (360)
T ss_pred CcEEEEecCcccc-hHHHHHHHHhCcEEEEEeCCchhHHHH
Confidence 3789999998876 677777766 99999999997654443
No 384
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=95.02 E-value=0.048 Score=55.17 Aligned_cols=34 Identities=21% Similarity=0.419 Sum_probs=31.1
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCCe-EEEEeCCHH
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNIY-VVLKEVNSE 181 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~~-V~l~d~~~~ 181 (563)
+++.|+|+|-.|.+++..|+..|.+ |++++|+.+
T Consensus 127 k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~ 161 (289)
T PRK12548 127 KKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDD 161 (289)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCch
Confidence 5789999999999999999999996 999999973
No 385
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=94.91 E-value=0.11 Score=51.46 Aligned_cols=110 Identities=15% Similarity=0.218 Sum_probs=66.0
Q ss_pred HHHhhhhhhccCCCCCCCCCCCccceeEEEEcCCcchHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcC
Q 008509 123 HVFFAQRATSKVPNVTDIGLKPRGVRKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRG 201 (563)
Q Consensus 123 ~aF~~kr~~~k~~~~~~~~~~~~~~~kv~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g 201 (563)
-+||......|..+ +-|.|||+|-+|+-.+..|++.|. ++.++|.++-.+.....+ .+..+..-|
T Consensus 61 ~aFfGee~m~kl~~-----------syVVVVG~GgVGSwv~nmL~RSG~qKi~iVDfdqVSlsSLNrH---s~Atl~DVG 126 (430)
T KOG2018|consen 61 YAFFGEEGMEKLTN-----------SYVVVVGAGGVGSWVANMLLRSGVQKIRIVDFDQVSLSSLNRH---SCATLADVG 126 (430)
T ss_pred HhhhhhhHHHHhcC-----------cEEEEEecCchhHHHHHHHHHhcCceEEEechhhccHhhhhhh---hhhhHhhcC
Confidence 36777665555321 358999999999999999999998 688899887665553321 111222222
Q ss_pred CCCHHHHHhhhcCeee-----------ec-Ccc--cccCCCEEEEecCCChHHHHHHHHH
Q 008509 202 KLTQDKANNALKMLKG-----------VL-DYS--EFKDVDMVIEAVIESVPLKQKIFSE 247 (563)
Q Consensus 202 ~~~~~~~~~~~~~i~~-----------~~-~~~--~l~~aDlVieav~e~~~~k~~v~~~ 247 (563)
.-........+..|.+ +. +-+ ...+-|+||+|+ +|++.|..+++-
T Consensus 127 ~PK~~clkkh~skiaPw~eIdar~~l~~~~s~edll~gnPdFvvDci-DNidtKVdLL~y 185 (430)
T KOG2018|consen 127 TPKVMCLKKHFSKIAPWCEIDARNMLWTSSSEEDLLSGNPDFVVDCI-DNIDTKVDLLEY 185 (430)
T ss_pred CchHHHHHHHHHhhCccceecHHHhhcCCCchhhhhcCCCCeEeEhh-hhhhhhhHHHHH
Confidence 2111111222222211 11 112 246799999998 578888887653
No 386
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.91 E-value=0.044 Score=54.74 Aligned_cols=70 Identities=17% Similarity=0.249 Sum_probs=53.2
Q ss_pred eeEEEEcCCcc-hHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCc-cccc
Q 008509 148 RKVAVIGGGLM-GSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 225 (563)
Q Consensus 148 ~kv~ViGaG~m-G~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 225 (563)
++|.|||.|.. |..+|..|.+.|..|+++...- .|+ +.++
T Consensus 159 k~vvViGrs~iVGkPla~lL~~~~atVt~~hs~t--------------------------------------~~l~~~~~ 200 (285)
T PRK14189 159 AHAVVIGRSNIVGKPMAMLLLQAGATVTICHSKT--------------------------------------RDLAAHTR 200 (285)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEecCCC--------------------------------------CCHHHHhh
Confidence 68999999776 9999999999999999865321 122 3568
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecC
Q 008509 226 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNT 262 (563)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~snt 262 (563)
+||+||.|++..- ++.. ..+++++++++..
T Consensus 201 ~ADIVV~avG~~~-----~i~~--~~ik~gavVIDVG 230 (285)
T PRK14189 201 QADIVVAAVGKRN-----VLTA--DMVKPGATVIDVG 230 (285)
T ss_pred hCCEEEEcCCCcC-----ccCH--HHcCCCCEEEEcc
Confidence 8999999998432 3332 5688999887654
No 387
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=94.86 E-value=0.068 Score=52.32 Aligned_cols=98 Identities=16% Similarity=0.114 Sum_probs=54.3
Q ss_pred eeEEEEcCCcchHHHHHHHHhCC-----------CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcC--
Q 008509 148 RKVAVIGGGLMGSGIATAHILNN-----------IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKM-- 214 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G-----------~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~-- 214 (563)
.+|.|||+|..|+.++..|++.| .+++++|.|.=.... +.+.+-....-|+...+.....+..
T Consensus 12 ~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve~sN----LnRQlf~~~dVG~~Ka~v~~~ri~~~~ 87 (244)
T TIGR03736 12 VSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEAN----VGRQAFYPADVGQNKAIVLVNRLNQAM 87 (244)
T ss_pred CeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEccch----hhcccCChhHCCcHHHHHHHHHHHhcc
Confidence 58999999999999999999874 389999976321111 1000000011122111111111111
Q ss_pred ---eeeec-C---cccccCCCEEEEecCCChHHHHHHHHHHHh
Q 008509 215 ---LKGVL-D---YSEFKDVDMVIEAVIESVPLKQKIFSELEK 250 (563)
Q Consensus 215 ---i~~~~-~---~~~l~~aDlVieav~e~~~~k~~v~~~l~~ 250 (563)
+.... . .+.+.++|+||.|+- +...+..+.+....
T Consensus 88 ~~~i~a~~~~~~~~~~~~~~DiVi~avD-n~~aR~~l~~~~~~ 129 (244)
T TIGR03736 88 GTDWTAHPERVERSSTLHRPDIVIGCVD-NRAARLAILRAFEG 129 (244)
T ss_pred CceEEEEEeeeCchhhhcCCCEEEECCC-CHHHHHHHHHHHHH
Confidence 11111 1 123567999999984 66777777666654
No 388
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.80 E-value=0.12 Score=56.39 Aligned_cols=46 Identities=22% Similarity=0.190 Sum_probs=36.2
Q ss_pred CCCCCCCCCCccceeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHH
Q 008509 135 PNVTDIGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE 181 (563)
Q Consensus 135 ~~~~~~~~~~~~~~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~ 181 (563)
|++..++.. .+-++|.|||+|..|.++|..|+..|++|+++|.++.
T Consensus 5 ~~~~~~~~~-~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~ 50 (480)
T PRK01438 5 PGLTSWHSD-WQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDD 50 (480)
T ss_pred cchhhcccC-cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 444444432 2346899999999999999999999999999997653
No 389
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=94.80 E-value=0.076 Score=52.52 Aligned_cols=47 Identities=15% Similarity=0.160 Sum_probs=40.7
Q ss_pred cceeEEEEcC-CcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHH
Q 008509 146 GVRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEA 192 (563)
Q Consensus 146 ~~~kv~ViGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~ 192 (563)
..+++.|-|+ +-+|..+|..|+++|++|+++.|+.+++++..+++++
T Consensus 5 ~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~ 52 (265)
T COG0300 5 KGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELED 52 (265)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHH
Confidence 4567888899 9999999999999999999999999999887655543
No 390
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=94.76 E-value=0.13 Score=44.46 Aligned_cols=79 Identities=16% Similarity=0.186 Sum_probs=50.8
Q ss_pred eeEEEEc----CCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCccc
Q 008509 148 RKVAVIG----GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE 223 (563)
Q Consensus 148 ~kv~ViG----aG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 223 (563)
++|+||| .+.+|.-+...|.++|++|+.++...+.++ .+....++++
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i~-----------------------------G~~~y~sl~e 51 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEIL-----------------------------GIKCYPSLAE 51 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEET-----------------------------TEE-BSSGGG
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEEC-----------------------------cEEeeccccC
Confidence 5799999 588899999999999999999987643211 2334445554
Q ss_pred c-cCCCEEEEecCCChHHHHHHHHHHHhhCCCCeEE
Q 008509 224 F-KDVDMVIEAVIESVPLKQKIFSELEKACPPHCIL 258 (563)
Q Consensus 224 l-~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii 258 (563)
. ...|+++.++|.+ .--++++++.+.- ...++
T Consensus 52 ~p~~iDlavv~~~~~--~~~~~v~~~~~~g-~~~v~ 84 (116)
T PF13380_consen 52 IPEPIDLAVVCVPPD--KVPEIVDEAAALG-VKAVW 84 (116)
T ss_dssp CSST-SEEEE-S-HH--HHHHHHHHHHHHT--SEEE
T ss_pred CCCCCCEEEEEcCHH--HHHHHHHHHHHcC-CCEEE
Confidence 4 7899999999744 3446777776553 33444
No 391
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=94.76 E-value=0.1 Score=50.97 Aligned_cols=32 Identities=19% Similarity=0.387 Sum_probs=29.1
Q ss_pred eEEEEcCCcchHHHHHHHHhCCC-eEEEEeCCH
Q 008509 149 KVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS 180 (563)
Q Consensus 149 kv~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~ 180 (563)
||.|||+|..|+.++..|+..|+ +++++|.|.
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~ 33 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDT 33 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 58999999999999999999998 788998863
No 392
>CHL00194 ycf39 Ycf39; Provisional
Probab=94.73 E-value=0.065 Score=54.92 Aligned_cols=35 Identities=23% Similarity=0.207 Sum_probs=32.0
Q ss_pred eeEEEEcC-CcchHHHHHHHHhCCCeEEEEeCCHHH
Q 008509 148 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEY 182 (563)
Q Consensus 148 ~kv~ViGa-G~mG~~iA~~la~~G~~V~l~d~~~~~ 182 (563)
++|.|+|+ |.+|+.++..|++.|++|++.+|+.+.
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~ 36 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRK 36 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHH
Confidence 37999997 999999999999999999999998764
No 393
>PRK10637 cysG siroheme synthase; Provisional
Probab=94.73 E-value=0.18 Score=54.44 Aligned_cols=128 Identities=18% Similarity=0.163 Sum_probs=80.3
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeec-C--cccc
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL-D--YSEF 224 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-~--~~~l 224 (563)
++|.|||+|.++..=+..|+..|.+|+++..+-.. .+..+.+.|. +.... + .+.+
T Consensus 13 ~~vlvvGgG~vA~rk~~~ll~~ga~v~visp~~~~----------~~~~l~~~~~------------i~~~~~~~~~~dl 70 (457)
T PRK10637 13 RDCLLVGGGDVAERKARLLLDAGARLTVNALAFIP----------QFTAWADAGM------------LTLVEGPFDESLL 70 (457)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCCCH----------HHHHHHhCCC------------EEEEeCCCChHHh
Confidence 68999999999999899999999999998654211 1111223333 22221 2 2578
Q ss_pred cCCCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhhhccCCCceeecccCCCC--CCCCeEEEEeCCC
Q 008509 225 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPA--HVMPLLEIVRTER 302 (563)
Q Consensus 225 ~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS~l~i~~la~~~~~~~r~ig~hf~~P~--~~~~lvEiv~~~~ 302 (563)
.++++||-|+. |.++.+.+ ...|....+++.+... |+ ..+|+.|. ...++.--+.+..
T Consensus 71 ~~~~lv~~at~-d~~~n~~i----~~~a~~~~~lvN~~d~------------~~---~~~f~~pa~~~~g~l~iaisT~G 130 (457)
T PRK10637 71 DTCWLAIAATD-DDAVNQRV----SEAAEARRIFCNVVDA------------PK---AASFIMPSIIDRSPLMVAVSSGG 130 (457)
T ss_pred CCCEEEEECCC-CHHHhHHH----HHHHHHcCcEEEECCC------------cc---cCeEEEeeEEecCCEEEEEECCC
Confidence 99999998864 54554444 4445444555443322 11 12455564 5667777778888
Q ss_pred CCHHHHHHHHHHHHH
Q 008509 303 TSAQVILDLMTVGKI 317 (563)
Q Consensus 303 t~~~~~~~~~~l~~~ 317 (563)
.+|.....+++-++.
T Consensus 131 ~sP~~a~~lr~~ie~ 145 (457)
T PRK10637 131 TSPVLARLLREKLES 145 (457)
T ss_pred CCcHHHHHHHHHHHH
Confidence 888777777666554
No 394
>PRK12828 short chain dehydrogenase; Provisional
Probab=94.71 E-value=0.052 Score=52.56 Aligned_cols=38 Identities=26% Similarity=0.281 Sum_probs=33.6
Q ss_pred eeEEEEcC-CcchHHHHHHHHhCCCeEEEEeCCHHHHHH
Q 008509 148 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLK 185 (563)
Q Consensus 148 ~kv~ViGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~ 185 (563)
++|.|+|+ |.+|..++..|++.|++|++.+++++....
T Consensus 8 k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~ 46 (239)
T PRK12828 8 KVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQ 46 (239)
T ss_pred CEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHH
Confidence 57889987 999999999999999999999999876544
No 395
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=94.66 E-value=0.096 Score=52.39 Aligned_cols=39 Identities=21% Similarity=0.021 Sum_probs=34.6
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCC-eEEEEeCCHHHHHHH
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKG 186 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~ 186 (563)
++|.|+|+|-.+.+++..|+..|. +|++++|++++.+..
T Consensus 123 ~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~l 162 (272)
T PRK12550 123 LVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKAL 162 (272)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHH
Confidence 479999999999999999999997 599999999876553
No 396
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=94.66 E-value=0.1 Score=46.52 Aligned_cols=72 Identities=18% Similarity=0.236 Sum_probs=54.7
Q ss_pred eeEEEEcC-CcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCcccccC
Q 008509 148 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 226 (563)
Q Consensus 148 ~kv~ViGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 226 (563)
++|.|+|- ...|..+|..|.+.|..|++.+.+-..++ +.+++
T Consensus 29 k~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~-------------------------------------~~v~~ 71 (140)
T cd05212 29 KKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQ-------------------------------------SKVHD 71 (140)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHH-------------------------------------HHHhh
Confidence 68999998 78899999999999999999986432211 24678
Q ss_pred CCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCC
Q 008509 227 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 263 (563)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS 263 (563)
||+||.++....-++.+ .+++++++.+...
T Consensus 72 ADIVvsAtg~~~~i~~~-------~ikpGa~Vidvg~ 101 (140)
T cd05212 72 ADVVVVGSPKPEKVPTE-------WIKPGATVINCSP 101 (140)
T ss_pred CCEEEEecCCCCccCHH-------HcCCCCEEEEcCC
Confidence 99999999866444444 4789998875443
No 397
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.66 E-value=0.43 Score=47.75 Aligned_cols=40 Identities=23% Similarity=0.263 Sum_probs=36.4
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCC-eEEEEeCCHHHHHHHH
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGI 187 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~ 187 (563)
..++|+|+|.+|.+.++-...+|. +++.+|+|+++.+.+.
T Consensus 194 stvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak 234 (375)
T KOG0022|consen 194 STVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAK 234 (375)
T ss_pred CEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHH
Confidence 579999999999999999988886 8999999999988764
No 398
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=94.65 E-value=0.064 Score=52.26 Aligned_cols=33 Identities=24% Similarity=0.288 Sum_probs=30.0
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCC-eEEEEeCCH
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS 180 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~ 180 (563)
.+|.|||+|..|+.+|..|++.|+ +++++|.+.
T Consensus 22 ~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ 55 (228)
T cd00757 22 ARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV 55 (228)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 589999999999999999999998 888998754
No 399
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=94.62 E-value=0.15 Score=51.76 Aligned_cols=98 Identities=22% Similarity=0.271 Sum_probs=59.4
Q ss_pred eeEEEEcC-CcchHHHHHHHHhCCCe---EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCccc
Q 008509 148 RKVAVIGG-GLMGSGIATAHILNNIY---VVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE 223 (563)
Q Consensus 148 ~kv~ViGa-G~mG~~iA~~la~~G~~---V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 223 (563)
.+|||+|+ |..|.-+...|....++ +.++-...+.-++. .+-+. ....-...+.+...
T Consensus 2 ~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~~-----------~~f~~-------~~~~v~~~~~~~~~ 63 (334)
T COG0136 2 LNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKKY-----------IEFGG-------KSIGVPEDAADEFV 63 (334)
T ss_pred cEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCCcc-----------ccccC-------ccccCccccccccc
Confidence 58999998 99999999999997654 33433322211110 00000 00000111234456
Q ss_pred ccCCCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHH
Q 008509 224 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN 268 (563)
Q Consensus 224 l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS~l~i~ 268 (563)
.+++|+|+.|.+.+.. +++..++ ...++++++|+|.....
T Consensus 64 ~~~~Divf~~ag~~~s--~~~~p~~---~~~G~~VIdnsSa~Rm~ 103 (334)
T COG0136 64 FSDVDIVFFAAGGSVS--KEVEPKA---AEAGCVVIDNSSAFRMD 103 (334)
T ss_pred cccCCEEEEeCchHHH--HHHHHHH---HHcCCEEEeCCcccccC
Confidence 7899999999987654 3444443 45689999999986543
No 400
>PRK07877 hypothetical protein; Provisional
Probab=94.62 E-value=0.038 Score=62.45 Aligned_cols=32 Identities=19% Similarity=0.374 Sum_probs=28.9
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCC--eEEEEeCCH
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNS 180 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~--~V~l~d~~~ 180 (563)
.+|+|+|+| .|+.+|..|+++|. +++++|.|.
T Consensus 108 ~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ 141 (722)
T PRK07877 108 LRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDT 141 (722)
T ss_pred CCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCE
Confidence 579999999 89999999999996 899999863
No 401
>PRK06349 homoserine dehydrogenase; Provisional
Probab=94.59 E-value=0.09 Score=56.26 Aligned_cols=66 Identities=26% Similarity=0.192 Sum_probs=42.0
Q ss_pred eeEEEEcCCcchHHHHHHHHhC--------C--Ce-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCee
Q 008509 148 RKVAVIGGGLMGSGIATAHILN--------N--IY-VVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLK 216 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~--------G--~~-V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~ 216 (563)
-+|+|||+|+||.+++..+.++ | ++ +.++|++.++.+.. . . ....
T Consensus 4 i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~~------------~---~---------~~~~ 59 (426)
T PRK06349 4 LKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRGV------------D---L---------PGIL 59 (426)
T ss_pred EEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccCC------------C---C---------cccc
Confidence 5899999999999998877543 3 34 44668886542210 0 0 1123
Q ss_pred eecCccc-c--cCCCEEEEecCCC
Q 008509 217 GVLDYSE-F--KDVDMVIEAVIES 237 (563)
Q Consensus 217 ~~~~~~~-l--~~aDlVieav~e~ 237 (563)
.++|++. + .+.|+|+||++..
T Consensus 60 ~~~d~~~ll~d~~iDvVve~tg~~ 83 (426)
T PRK06349 60 LTTDPEELVNDPDIDIVVELMGGI 83 (426)
T ss_pred eeCCHHHHhhCCCCCEEEECCCCc
Confidence 4556643 3 3579999998653
No 402
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=94.58 E-value=0.056 Score=53.08 Aligned_cols=34 Identities=15% Similarity=0.292 Sum_probs=30.6
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCC-eEEEEeCCHH
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSE 181 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~~ 181 (563)
.+|.|+|+|.+|+.+|..|++.|. +++++|.+.-
T Consensus 25 ~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~v 59 (240)
T TIGR02355 25 SRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTV 59 (240)
T ss_pred CcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcc
Confidence 579999999999999999999997 7899998753
No 403
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=94.53 E-value=0.038 Score=57.86 Aligned_cols=32 Identities=22% Similarity=0.335 Sum_probs=30.1
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCC-eEEEEeCC
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVN 179 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~-~V~l~d~~ 179 (563)
.+|.|||+|.+|+.++..|+..|+ +++++|.+
T Consensus 42 ~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D 74 (370)
T PRK05600 42 ARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD 74 (370)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 479999999999999999999997 89999987
No 404
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=94.50 E-value=0.15 Score=53.16 Aligned_cols=39 Identities=23% Similarity=0.227 Sum_probs=34.2
Q ss_pred eEEEEcCCcchHHHHHHHHhCCC-eEEEEeCCHHHHHHHH
Q 008509 149 KVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGI 187 (563)
Q Consensus 149 kv~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~ 187 (563)
+|.|+|+|.+|...++.+...|. +|++.|+++++++.+.
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~ 210 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAK 210 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHH
Confidence 79999999999998888888885 7888899999988764
No 405
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=94.50 E-value=0.15 Score=43.09 Aligned_cols=96 Identities=18% Similarity=0.186 Sum_probs=63.1
Q ss_pred eeEEEEcCCcchHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeee-cCc---
Q 008509 148 RKVAVIGGGLMGSGIATAHIL--NNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV-LDY--- 221 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~--~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~--- 221 (563)
.+|.-||+|+ +.++..+++ .|.+|+.+|.+++.++.+++++. +.+ ...+++.. .|.
T Consensus 3 ~~vLDlGcG~--G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~-------~~~---------~~~~i~~~~~d~~~~ 64 (112)
T PF12847_consen 3 GRVLDLGCGT--GRLSIALARLFPGARVVGVDISPEMLEIARERAA-------EEG---------LSDRITFVQGDAEFD 64 (112)
T ss_dssp CEEEEETTTT--SHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHH-------HTT---------TTTTEEEEESCCHGG
T ss_pred CEEEEEcCcC--CHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHH-------hcC---------CCCCeEEEECccccC
Confidence 4788999988 344444555 89999999999999988765441 111 11233322 233
Q ss_pred -ccccCCCEEEEec-----CCChHHHHHHHHHHHhhCCCCeEEEec
Q 008509 222 -SEFKDVDMVIEAV-----IESVPLKQKIFSELEKACPPHCILATN 261 (563)
Q Consensus 222 -~~l~~aDlVieav-----~e~~~~k~~v~~~l~~~~~~~~ii~sn 261 (563)
+.....|+|+..- .-..+..+.+++++.+.++|+.+++.+
T Consensus 65 ~~~~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~ 110 (112)
T PF12847_consen 65 PDFLEPFDLVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVIN 110 (112)
T ss_dssp TTTSSCEEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cccCCCCCEEEECCCccccccchhHHHHHHHHHHHhcCCCcEEEEE
Confidence 3446789999866 222245678899999999998766543
No 406
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=94.47 E-value=0.033 Score=58.07 Aligned_cols=33 Identities=27% Similarity=0.313 Sum_probs=30.5
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCC-eEEEEeCCH
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS 180 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~ 180 (563)
.+|.|||+|..|+.++..|+..|+ +++++|.+.
T Consensus 29 ~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ 62 (355)
T PRK05597 29 AKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT 62 (355)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 589999999999999999999998 799999874
No 407
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=94.46 E-value=0.12 Score=53.67 Aligned_cols=100 Identities=15% Similarity=0.129 Sum_probs=58.0
Q ss_pred ceeEEEEcC-CcchHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCcc--
Q 008509 147 VRKVAVIGG-GLMGSGIATAHILN-NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS-- 222 (563)
Q Consensus 147 ~~kv~ViGa-G~mG~~iA~~la~~-G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-- 222 (563)
+.||+|||+ |.+|..++..+.+. +++++.+-.+.+..+.. .... +.+. .. .... ..+++
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l----~~~~------~~~~-----~~-~~~~-~~~~~~~ 64 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPL----SDVH------PHLR-----GL-VDLV-LEPLDPE 64 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcch----HHhC------cccc-----cc-cCce-eecCCHH
Confidence 469999997 99999999999877 77876543332221111 0000 0000 00 0001 11222
Q ss_pred cccCCCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHH
Q 008509 223 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN 268 (563)
Q Consensus 223 ~l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS~l~i~ 268 (563)
...++|+|+.|+|.... .++..++ ...++.++++++...+.
T Consensus 65 ~~~~vD~Vf~alP~~~~--~~~v~~a---~~aG~~VID~S~~fR~~ 105 (343)
T PRK00436 65 ILAGADVVFLALPHGVS--MDLAPQL---LEAGVKVIDLSADFRLK 105 (343)
T ss_pred HhcCCCEEEECCCcHHH--HHHHHHH---HhCCCEEEECCcccCCC
Confidence 45789999999997632 2333333 34688899998877653
No 408
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=94.40 E-value=0.14 Score=49.87 Aligned_cols=33 Identities=30% Similarity=0.326 Sum_probs=30.4
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCC-eEEEEeCCH
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS 180 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~ 180 (563)
.+|.|+|+|.+|+.++..|++.|. +++++|.+.
T Consensus 12 ~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~ 45 (231)
T cd00755 12 AHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDV 45 (231)
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 579999999999999999999998 899999764
No 409
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=94.38 E-value=0.032 Score=58.66 Aligned_cols=32 Identities=22% Similarity=0.287 Sum_probs=30.2
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCC-eEEEEeCC
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVN 179 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~-~V~l~d~~ 179 (563)
.+|.|||+|..|+.++..|+..|+ +++++|.+
T Consensus 136 ~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 136 ARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 579999999999999999999998 79999997
No 410
>PRK12829 short chain dehydrogenase; Provisional
Probab=94.37 E-value=0.19 Score=49.59 Aligned_cols=38 Identities=29% Similarity=0.303 Sum_probs=34.2
Q ss_pred eeEEEEcC-CcchHHHHHHHHhCCCeEEEEeCCHHHHHH
Q 008509 148 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLK 185 (563)
Q Consensus 148 ~kv~ViGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~ 185 (563)
++|.|+|+ |.+|..++..|+..|++|++.+++++..+.
T Consensus 12 ~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~ 50 (264)
T PRK12829 12 LRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAA 50 (264)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 67999988 999999999999999999999999876554
No 411
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=94.28 E-value=0.23 Score=52.73 Aligned_cols=166 Identities=14% Similarity=0.090 Sum_probs=81.6
Q ss_pred eEEEEcCCcchHHHHHHHHhCCC------eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhc------Cee
Q 008509 149 KVAVIGGGLMGSGIATAHILNNI------YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALK------MLK 216 (563)
Q Consensus 149 kv~ViGaG~mG~~iA~~la~~G~------~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~------~i~ 216 (563)
||.|||+|..|+-++..|+..|+ +++++|.+.=.......+ -+-+...-|+-..+.+...+. ++.
T Consensus 1 kVlvVGaGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~Ie~SNLnRQ---fLf~~~dIGk~Ka~vAa~~l~~lNp~v~I~ 77 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNLNRQ---FLFRPHDVGKPKSEVAAAAVKAMNPDLKIT 77 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCcCCCCeEEEECCCCccccccCcC---ccCChhHcCcHHHHHHHHHHHHHCCCCEEE
Confidence 58999999999999999999998 899999764211110000 000000001100000000010 111
Q ss_pred eec-C----------cccccCCCEEEEecCCChHHHHHHHHHHHhhCCCCe-EEEecCCCCCHHHHhhhccCCCceeecc
Q 008509 217 GVL-D----------YSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHC-ILATNTSTIDLNIVGEKTSSQDRIIGAH 284 (563)
Q Consensus 217 ~~~-~----------~~~l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~-ii~sntS~l~i~~la~~~~~~~r~ig~h 284 (563)
... . .+-+++.|+||.|+- +.+.+..+-+..... +. +|-+.|.+.. ....-..+.-...-...
T Consensus 78 a~~~~v~~~~~~~~~~~f~~~~DvVi~alD-n~~aR~~vn~~C~~~---~iPli~~gt~G~~-G~v~v~iP~~te~y~~~ 152 (435)
T cd01490 78 ALQNRVGPETEHIFNDEFWEKLDGVANALD-NVDARMYVDRRCVYY---RKPLLESGTLGTK-GNTQVVIPHLTESYSSS 152 (435)
T ss_pred EEecccChhhhhhhhHHHhcCCCEEEECCC-CHHHHHHHHHHHHHh---CCCEEEEecccce-eEEEEEeCCCCCCccCC
Confidence 111 0 123578999999974 455444333332222 22 3333333321 11111111100111222
Q ss_pred cCCCCCCCCeEEEEeCCCCCHHHHHHHHHHHHHh-CCce
Q 008509 285 FFSPAHVMPLLEIVRTERTSAQVILDLMTVGKII-KKVP 322 (563)
Q Consensus 285 f~~P~~~~~lvEiv~~~~t~~~~~~~~~~l~~~l-Gk~~ 322 (563)
.-.|....|.+++-..+..-.-.++.++.++..+ +..+
T Consensus 153 ~~p~~~~~P~Ctl~~~P~~~eHcI~wA~~~F~~lF~~~~ 191 (435)
T cd01490 153 RDPPEKSIPLCTLKNFPNAIEHTIQWARDEFEGLFKQPP 191 (435)
T ss_pred CCCCCCCCCCccccCCCCCchHHHHHHHHHHHHHhccch
Confidence 2223345677888777878888999999988764 4433
No 412
>PRK08374 homoserine dehydrogenase; Provisional
Probab=94.24 E-value=0.15 Score=52.80 Aligned_cols=21 Identities=29% Similarity=0.371 Sum_probs=19.0
Q ss_pred eeEEEEcCCcchHHHHHHHHh
Q 008509 148 RKVAVIGGGLMGSGIATAHIL 168 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~ 168 (563)
-+|+|+|.|++|++++..+..
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~ 23 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAE 23 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHH
Confidence 489999999999999988876
No 413
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=94.22 E-value=0.053 Score=41.91 Aligned_cols=30 Identities=27% Similarity=0.290 Sum_probs=27.1
Q ss_pred EEcCCcchHHHHHHHHhCCCeEEEEeCCHH
Q 008509 152 VIGGGLMGSGIATAHILNNIYVVLKEVNSE 181 (563)
Q Consensus 152 ViGaG~mG~~iA~~la~~G~~V~l~d~~~~ 181 (563)
|||+|.-|...|..|++.|++|+++|.+..
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~ 30 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDR 30 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcc
Confidence 899999999999999999999999998753
No 414
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=94.22 E-value=0.2 Score=50.61 Aligned_cols=97 Identities=20% Similarity=0.197 Sum_probs=56.4
Q ss_pred eeEEEEcCCcchHHHHHHHHhC-CCeEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCC-HHHHHhhhcCeeeecCcccc
Q 008509 148 RKVAVIGGGLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLT-QDKANNALKMLKGVLDYSEF 224 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~-~~~~~~~~~~i~~~~~~~~l 224 (563)
-||+|||+|.+|......+.+. ++++. ++|+++++..... ..+.|.-. ....+..+. ...+
T Consensus 5 lrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~---------A~~~Gi~~~~~~ie~LL~-------~~~~ 68 (302)
T PRK08300 5 LKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLAR---------ARRLGVATSAEGIDGLLA-------MPEF 68 (302)
T ss_pred CeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHH---------HHHcCCCcccCCHHHHHh-------CcCC
Confidence 4799999999999987777754 66765 7899886422111 01122110 011111111 0124
Q ss_pred cCCCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCCCC
Q 008509 225 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI 265 (563)
Q Consensus 225 ~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS~l 265 (563)
.+.|+|+++.+.... .+. .......++.+.++++..
T Consensus 69 ~dIDiVf~AT~a~~H--~e~---a~~a~eaGk~VID~sPA~ 104 (302)
T PRK08300 69 DDIDIVFDATSAGAH--VRH---AAKLREAGIRAIDLTPAA 104 (302)
T ss_pred CCCCEEEECCCHHHH--HHH---HHHHHHcCCeEEECCccc
Confidence 679999999986532 222 233345688888887753
No 415
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=94.22 E-value=0.048 Score=58.08 Aligned_cols=33 Identities=21% Similarity=0.251 Sum_probs=31.1
Q ss_pred eEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHH
Q 008509 149 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE 181 (563)
Q Consensus 149 kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~ 181 (563)
+|+|||+|.+|.++|..|++.|++|+++|++..
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~ 34 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPG 34 (416)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCc
Confidence 799999999999999999999999999999753
No 416
>PRK06194 hypothetical protein; Provisional
Probab=94.21 E-value=0.22 Score=49.95 Aligned_cols=40 Identities=18% Similarity=0.275 Sum_probs=34.7
Q ss_pred eeEEEEcC-CcchHHHHHHHHhCCCeEEEEeCCHHHHHHHH
Q 008509 148 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGI 187 (563)
Q Consensus 148 ~kv~ViGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (563)
++|.|.|+ |.+|..+|..|++.|++|+++|++.+.++...
T Consensus 7 k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 47 (287)
T PRK06194 7 KVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAV 47 (287)
T ss_pred CEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHH
Confidence 56888887 89999999999999999999999987766543
No 417
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=94.20 E-value=0.19 Score=48.91 Aligned_cols=31 Identities=29% Similarity=0.248 Sum_probs=29.0
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCCeEE-EEeC
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNIYVV-LKEV 178 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~~V~-l~d~ 178 (563)
++|+|.|.|.+|..+|..|...|.+|+ +.|.
T Consensus 32 ~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~ 63 (227)
T cd01076 32 ARVAIQGFGNVGSHAARFLHEAGAKVVAVSDS 63 (227)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECC
Confidence 689999999999999999999999998 7777
No 418
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=94.19 E-value=0.093 Score=51.70 Aligned_cols=33 Identities=18% Similarity=0.318 Sum_probs=30.1
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCC-eEEEEeCCH
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS 180 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~ 180 (563)
.+|.|||+|..|+.++..|+..|+ +++++|.+.
T Consensus 33 ~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ 66 (245)
T PRK05690 33 ARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDT 66 (245)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 589999999999999999999997 799998763
No 419
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=94.08 E-value=0.084 Score=52.50 Aligned_cols=33 Identities=27% Similarity=0.350 Sum_probs=30.2
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCC-eEEEEeCCH
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS 180 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~ 180 (563)
.+|.|+|+|.+|+.+|..|++.|+ +++++|.+.
T Consensus 31 s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~ 64 (268)
T PRK15116 31 AHICVVGIGGVGSWAAEALARTGIGAITLIDMDD 64 (268)
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence 579999999999999999999995 899999874
No 420
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=94.07 E-value=0.24 Score=47.70 Aligned_cols=36 Identities=25% Similarity=0.304 Sum_probs=31.6
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCC-eEEEEeCCHHHH
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYL 183 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~ 183 (563)
++|.|+|.|-+|+-.+..|++.|+ +++++|.+.=.+
T Consensus 31 ~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~v 67 (263)
T COG1179 31 AHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCV 67 (263)
T ss_pred CcEEEEecCchhHHHHHHHHHcCCCeEEEEecccccc
Confidence 589999999999999999999998 799999875433
No 421
>PLN00016 RNA-binding protein; Provisional
Probab=94.07 E-value=0.13 Score=54.19 Aligned_cols=37 Identities=24% Similarity=0.293 Sum_probs=33.3
Q ss_pred cceeEEEE----cC-CcchHHHHHHHHhCCCeEEEEeCCHHH
Q 008509 146 GVRKVAVI----GG-GLMGSGIATAHILNNIYVVLKEVNSEY 182 (563)
Q Consensus 146 ~~~kv~Vi----Ga-G~mG~~iA~~la~~G~~V~l~d~~~~~ 182 (563)
..++|.|+ |+ |.+|+.++..|++.||+|++++++.+.
T Consensus 51 ~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~ 92 (378)
T PLN00016 51 EKKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEP 92 (378)
T ss_pred ccceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcc
Confidence 34789999 76 999999999999999999999998765
No 422
>KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion]
Probab=94.06 E-value=1.5 Score=43.30 Aligned_cols=120 Identities=21% Similarity=0.334 Sum_probs=67.6
Q ss_pred cceeEEEEcC-CcchHHHHHHHHhCCC--eEEEEeCCHHH-HHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeee---e
Q 008509 146 GVRKVAVIGG-GLMGSGIATAHILNNI--YVVLKEVNSEY-LLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG---V 218 (563)
Q Consensus 146 ~~~kv~ViGa-G~mG~~iA~~la~~G~--~V~l~d~~~~~-~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~---~ 218 (563)
+.-||+|+|+ |-+|..+...|..+-. +..+||+.... +..-+. .++. .+.+.+ .
T Consensus 27 ~~~KVAvlGAaGGIGQPLSLLlK~np~Vs~LaLYDi~~~~GVaaDlS-------------HI~T------~s~V~g~~g~ 87 (345)
T KOG1494|consen 27 RGLKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIANTPGVAADLS-------------HINT------NSSVVGFTGA 87 (345)
T ss_pred CcceEEEEecCCccCccHHHHHhcCcccceeeeeecccCCccccccc-------------ccCC------CCceeccCCh
Confidence 4569999999 9999999988876632 78899986321 000000 0000 001111 1
Q ss_pred cCc-ccccCCCEEEEe--cCC------------ChHHHHHHHHHHHhhCCCCeE-EEec--CCCCCHH-HHhhh--ccCC
Q 008509 219 LDY-SEFKDVDMVIEA--VIE------------SVPLKQKIFSELEKACPPHCI-LATN--TSTIDLN-IVGEK--TSSQ 277 (563)
Q Consensus 219 ~~~-~~l~~aDlViea--v~e------------~~~~k~~v~~~l~~~~~~~~i-i~sn--tS~l~i~-~la~~--~~~~ 277 (563)
..+ +++++||+||.- ||- |..+.+.+-..+.+.|+.-.| ++|| -|+.||. ++... .-.|
T Consensus 88 ~~L~~al~~advVvIPAGVPRKPGMTRDDLFn~NAgIv~~l~~aia~~cP~A~i~vIsNPVNstVPIaaevlKk~G~ydp 167 (345)
T KOG1494|consen 88 DGLENALKGADVVVIPAGVPRKPGMTRDDLFNINAGIVKTLAAAIAKCCPNALILVISNPVNSTVPIAAEVLKKAGVYDP 167 (345)
T ss_pred hHHHHHhcCCCEEEecCCCCCCCCCcHHHhhhcchHHHHHHHHHHHhhCccceeEeecCcccccchHHHHHHHHcCCCCc
Confidence 122 578999999964 332 333444555556777765443 3466 3666765 33322 2256
Q ss_pred Cceeecc
Q 008509 278 DRIIGAH 284 (563)
Q Consensus 278 ~r~ig~h 284 (563)
.|+.|..
T Consensus 168 kklfGVT 174 (345)
T KOG1494|consen 168 KKLFGVT 174 (345)
T ss_pred cceecee
Confidence 7777754
No 423
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.03 E-value=0.14 Score=51.14 Aligned_cols=71 Identities=15% Similarity=0.178 Sum_probs=52.7
Q ss_pred eeEEEEcCC-cchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCcccccC
Q 008509 148 RKVAVIGGG-LMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 226 (563)
Q Consensus 148 ~kv~ViGaG-~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 226 (563)
++|.|||.| ..|..+|..|.+.|..|++.......+. +.+++
T Consensus 158 k~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t~~l~-------------------------------------~~~~~ 200 (285)
T PRK14191 158 KDVVIIGASNIVGKPLAMLMLNAGASVSVCHILTKDLS-------------------------------------FYTQN 200 (285)
T ss_pred CEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCcHHHH-------------------------------------HHHHh
Confidence 689999998 9999999999999999999864322211 24578
Q ss_pred CCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecC
Q 008509 227 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNT 262 (563)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~snt 262 (563)
||+||.|+.-.--++. ..+++++++++..
T Consensus 201 ADIvV~AvG~p~~i~~-------~~vk~GavVIDvG 229 (285)
T PRK14191 201 ADIVCVGVGKPDLIKA-------SMVKKGAVVVDIG 229 (285)
T ss_pred CCEEEEecCCCCcCCH-------HHcCCCcEEEEee
Confidence 9999999964432322 3468899887643
No 424
>PLN03075 nicotianamine synthase; Provisional
Probab=94.03 E-value=0.25 Score=49.74 Aligned_cols=102 Identities=18% Similarity=0.163 Sum_probs=67.1
Q ss_pred ceeEEEEcCCcchHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeee-cCc--
Q 008509 147 VRKVAVIGGGLMGSGIATAHILN--NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV-LDY-- 221 (563)
Q Consensus 147 ~~kv~ViGaG~mG~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~-- 221 (563)
-++|+.||.|..|-.-...++.. +-.|+.+|++++.++.+++.+.+. .| + ..++++. .|.
T Consensus 124 p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~------~g-L--------~~rV~F~~~Da~~ 188 (296)
T PLN03075 124 PTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSD------PD-L--------SKRMFFHTADVMD 188 (296)
T ss_pred CCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhc------cC-c--------cCCcEEEECchhh
Confidence 47899999998765444333333 447999999999998876543210 11 1 1123332 121
Q ss_pred --ccccCCCEEEEecCCCh--HHHHHHHHHHHhhCCCCeEEEecCC
Q 008509 222 --SEFKDVDMVIEAVIESV--PLKQKIFSELEKACPPHCILATNTS 263 (563)
Q Consensus 222 --~~l~~aDlVieav~e~~--~~k~~v~~~l~~~~~~~~ii~sntS 263 (563)
..+.+.|+|+..+--.. +-|+.++..+.+.++|+.++..-++
T Consensus 189 ~~~~l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~ 234 (296)
T PLN03075 189 VTESLKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRSA 234 (296)
T ss_pred cccccCCcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEecc
Confidence 23578999998863222 4588999999999999998876543
No 425
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=93.99 E-value=0.061 Score=55.37 Aligned_cols=31 Identities=29% Similarity=0.332 Sum_probs=29.8
Q ss_pred eEEEEcCCcchHHHHHHHHhCCCeEEEEeCC
Q 008509 149 KVAVIGGGLMGSGIATAHILNNIYVVLKEVN 179 (563)
Q Consensus 149 kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~ 179 (563)
.|+|||+|..|.++|..|++.|++|+++|.+
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G~~V~l~e~~ 31 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRGHSVTLLERG 31 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeec
Confidence 4899999999999999999999999999997
No 426
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=93.96 E-value=0.15 Score=51.90 Aligned_cols=32 Identities=22% Similarity=0.474 Sum_probs=29.3
Q ss_pred eEEEEcCCcchHHHHHHHHhCCC-eEEEEeCCH
Q 008509 149 KVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS 180 (563)
Q Consensus 149 kv~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~ 180 (563)
||.|||+|..|+-++..|+..|+ +++++|.+.
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~ 33 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDT 33 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCCC
Confidence 58999999999999999999998 799999764
No 427
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=93.92 E-value=0.12 Score=47.29 Aligned_cols=73 Identities=19% Similarity=0.256 Sum_probs=48.2
Q ss_pred eeEEEEcCC-cchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCcccccC
Q 008509 148 RKVAVIGGG-LMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 226 (563)
Q Consensus 148 ~kv~ViGaG-~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 226 (563)
++|.|||-+ ..|..++..|.+.|..|++.+..-..++ +.++.
T Consensus 37 k~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T~~l~-------------------------------------~~~~~ 79 (160)
T PF02882_consen 37 KKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKTKNLQ-------------------------------------EITRR 79 (160)
T ss_dssp -EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTSSSHH-------------------------------------HHHTT
T ss_pred CEEEEECCcCCCChHHHHHHHhCCCeEEeccCCCCccc-------------------------------------ceeee
Confidence 689999996 6999999999999999999876532222 24578
Q ss_pred CCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCCC
Q 008509 227 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 264 (563)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS~ 264 (563)
||+||.|+...--++. ..+++++++++....
T Consensus 80 ADIVVsa~G~~~~i~~-------~~ik~gavVIDvG~~ 110 (160)
T PF02882_consen 80 ADIVVSAVGKPNLIKA-------DWIKPGAVVIDVGIN 110 (160)
T ss_dssp SSEEEE-SSSTT-B-G-------GGS-TTEEEEE--CE
T ss_pred ccEEeeeecccccccc-------ccccCCcEEEecCCc
Confidence 9999999975543433 347899988876544
No 428
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.90 E-value=0.67 Score=49.97 Aligned_cols=33 Identities=27% Similarity=0.380 Sum_probs=31.5
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCH
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNS 180 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~ 180 (563)
++|.|+|+|.+|.++|..|++.|++|+++|++.
T Consensus 6 k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 6 KKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 689999999999999999999999999999985
No 429
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=93.85 E-value=0.33 Score=53.34 Aligned_cols=40 Identities=15% Similarity=0.049 Sum_probs=35.0
Q ss_pred eeEEEEcC-CcchHHHHHHHHhCCCeEEEEeCCHHHHHHHH
Q 008509 148 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGI 187 (563)
Q Consensus 148 ~kv~ViGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (563)
+.|.|.|+ |.+|..++..|++.|++|++++|+.+.++...
T Consensus 81 KvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~ 121 (576)
T PLN03209 81 DLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLV 121 (576)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH
Confidence 46888887 99999999999999999999999998766543
No 430
>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=93.84 E-value=0.038 Score=52.33 Aligned_cols=53 Identities=21% Similarity=0.228 Sum_probs=46.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCcHhHHHHH
Q 008509 459 EKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADA 512 (563)
Q Consensus 459 ~~~i~~r~l~~~~~ea~~~l~~gv~~~~~diD~~~~~g~g~p~~~gGp~~~~d~ 512 (563)
.++.+||+.++++||.-+++..||. +..|+|..|-.|+|.+----||++.+-.
T Consensus 188 ~Gf~lnriq~Ailne~wrLvasGil-~v~dvD~VmS~GLG~RYAflG~lET~HL 240 (313)
T KOG2305|consen 188 LGFALNRIQYAILNETWRLVASGIL-NVNDVDAVMSAGLGPRYAFLGPLETAHL 240 (313)
T ss_pred ccceeccccHHHHHHHHHHHHccCc-chhhHHHHHhcCCCcchhcccchhhhhc
Confidence 4789999999999999999999999 8999999999999965444589987654
No 431
>PRK07326 short chain dehydrogenase; Provisional
Probab=93.84 E-value=0.097 Score=50.77 Aligned_cols=39 Identities=21% Similarity=0.275 Sum_probs=34.3
Q ss_pred eeEEEEcC-CcchHHHHHHHHhCCCeEEEEeCCHHHHHHH
Q 008509 148 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKG 186 (563)
Q Consensus 148 ~kv~ViGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 186 (563)
++|.|+|+ |.+|..++..|+..|++|++.+++++.++..
T Consensus 7 ~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~ 46 (237)
T PRK07326 7 KVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELEEA 46 (237)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHH
Confidence 57889987 9999999999999999999999998776543
No 432
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=93.82 E-value=0.055 Score=55.66 Aligned_cols=33 Identities=30% Similarity=0.369 Sum_probs=29.3
Q ss_pred eEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHH
Q 008509 149 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE 181 (563)
Q Consensus 149 kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~ 181 (563)
+|+|||+|.-|..+|..|+++|++|+++|+++.
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~ 35 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAGIDVTIIERRPD 35 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred eEEEECCCHHHHHHHHHHHhcccccccchhccc
Confidence 699999999999999999999999999999765
No 433
>PRK05868 hypothetical protein; Validated
Probab=93.81 E-value=0.053 Score=57.00 Aligned_cols=36 Identities=19% Similarity=0.188 Sum_probs=33.0
Q ss_pred ceeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHHH
Q 008509 147 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY 182 (563)
Q Consensus 147 ~~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~ 182 (563)
|++|.|||+|.-|...|..|++.|++|+++|++++.
T Consensus 1 ~~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~ 36 (372)
T PRK05868 1 MKTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGL 36 (372)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Confidence 468999999999999999999999999999988653
No 434
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=93.74 E-value=0.12 Score=54.36 Aligned_cols=102 Identities=16% Similarity=0.245 Sum_probs=61.1
Q ss_pred cceeEEEEcC-CcchHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCccc
Q 008509 146 GVRKVAVIGG-GLMGSGIATAHILN-NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE 223 (563)
Q Consensus 146 ~~~kv~ViGa-G~mG~~iA~~la~~-G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 223 (563)
+.+||+|+|+ |..|.-+...|..+ +++|+.+..+.++-+. +......+. .+.. ..+. ..+.+.
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~----i~~~~~~l~-~~~~---------~~~~-~~~~~~ 101 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQS----FGSVFPHLI-TQDL---------PNLV-AVKDAD 101 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCC----chhhCcccc-Cccc---------ccee-cCCHHH
Confidence 4579999999 99999999999988 7899998775443111 100000000 0000 0010 111234
Q ss_pred ccCCCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHH
Q 008509 224 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN 268 (563)
Q Consensus 224 l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS~l~i~ 268 (563)
++++|+||.|+|.. .-+++... +..++.|++++|.....
T Consensus 102 ~~~~DvVf~Alp~~--~s~~i~~~----~~~g~~VIDlSs~fRl~ 140 (381)
T PLN02968 102 FSDVDAVFCCLPHG--TTQEIIKA----LPKDLKIVDLSADFRLR 140 (381)
T ss_pred hcCCCEEEEcCCHH--HHHHHHHH----HhCCCEEEEcCchhccC
Confidence 68999999999865 23344333 34578888888765443
No 435
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.73 E-value=0.2 Score=49.90 Aligned_cols=72 Identities=15% Similarity=0.237 Sum_probs=54.7
Q ss_pred eeEEEEcCC-cchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCcccccC
Q 008509 148 RKVAVIGGG-LMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 226 (563)
Q Consensus 148 ~kv~ViGaG-~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 226 (563)
++|.|||-+ ..|..+|..+...|..|+....+...+. +.+++
T Consensus 153 k~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t~~L~-------------------------------------~~~~~ 195 (279)
T PRK14178 153 KRAVVVGRSIDVGRPMAALLLNADATVTICHSKTENLK-------------------------------------AELRQ 195 (279)
T ss_pred CEEEEECCCccccHHHHHHHHhCCCeeEEEecChhHHH-------------------------------------HHHhh
Confidence 689999998 9999999999999999999887643322 23578
Q ss_pred CCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCC
Q 008509 227 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 263 (563)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS 263 (563)
||+||.|++-..-++.+ .+++++++.+...
T Consensus 196 ADIvI~Avgk~~lv~~~-------~vk~GavVIDVgi 225 (279)
T PRK14178 196 ADILVSAAGKAGFITPD-------MVKPGATVIDVGI 225 (279)
T ss_pred CCEEEECCCcccccCHH-------HcCCCcEEEEeec
Confidence 99999999743223333 3589999887554
No 436
>PRK07236 hypothetical protein; Provisional
Probab=93.66 E-value=0.074 Score=56.10 Aligned_cols=36 Identities=25% Similarity=0.093 Sum_probs=33.2
Q ss_pred cceeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHH
Q 008509 146 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE 181 (563)
Q Consensus 146 ~~~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~ 181 (563)
+..+|.|||+|.-|...|..|+++|++|+++|+.+.
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT 40 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 457899999999999999999999999999999864
No 437
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=93.66 E-value=0.27 Score=50.02 Aligned_cols=85 Identities=24% Similarity=0.224 Sum_probs=59.3
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCcccccCC
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 227 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 227 (563)
+++.|.|-|-.|.++|..+.-.|.+|.++++||-..-++ .++-.+..+--++...+
T Consensus 210 K~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA------------------------~MdGf~V~~m~~Aa~~g 265 (420)
T COG0499 210 KNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEA------------------------AMDGFRVMTMEEAAKTG 265 (420)
T ss_pred ceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHH------------------------hhcCcEEEEhHHhhhcC
Confidence 467788999999999999999999999999998643221 12223333333677889
Q ss_pred CEEEEecCCChHHHHHHHHHHHhhCCCCeEEEe
Q 008509 228 DMVIEAVIESVPLKQKIFSELEKACPPHCILAT 260 (563)
Q Consensus 228 DlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s 260 (563)
|++|.|.-..--+.. +-...+++++|++.
T Consensus 266 DifiT~TGnkdVi~~----eh~~~MkDgaIl~N 294 (420)
T COG0499 266 DIFVTATGNKDVIRK----EHFEKMKDGAILAN 294 (420)
T ss_pred CEEEEccCCcCccCH----HHHHhccCCeEEec
Confidence 999998764433322 23334778888764
No 438
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=93.60 E-value=0.069 Score=55.93 Aligned_cols=33 Identities=27% Similarity=0.167 Sum_probs=30.6
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCH
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNS 180 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~ 180 (563)
-.|.|||+|.+|.++|..|++.|++|+++|++.
T Consensus 4 ~dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~ 36 (376)
T PRK11259 4 YDVIVIGLGSMGSAAGYYLARRGLRVLGLDRFM 36 (376)
T ss_pred ccEEEECCCHHHHHHHHHHHHCCCeEEEEeccc
Confidence 359999999999999999999999999999864
No 439
>PRK07831 short chain dehydrogenase; Provisional
Probab=93.56 E-value=0.16 Score=50.30 Aligned_cols=41 Identities=22% Similarity=0.285 Sum_probs=35.3
Q ss_pred eeEEEEcC-C-cchHHHHHHHHhCCCeEEEEeCCHHHHHHHHH
Q 008509 148 RKVAVIGG-G-LMGSGIATAHILNNIYVVLKEVNSEYLLKGIK 188 (563)
Q Consensus 148 ~kv~ViGa-G-~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~ 188 (563)
+++.|.|+ | .+|..++..|+..|++|++.+++++.++...+
T Consensus 18 k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~ 60 (262)
T PRK07831 18 KVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETAD 60 (262)
T ss_pred CEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence 67889997 6 59999999999999999999999887766543
No 440
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=93.46 E-value=0.34 Score=48.68 Aligned_cols=90 Identities=18% Similarity=0.186 Sum_probs=54.6
Q ss_pred eEEEEcCCcchHHHHHHHHh-CCCeEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCccc-c-
Q 008509 149 KVAVIGGGLMGSGIATAHIL-NNIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE-F- 224 (563)
Q Consensus 149 kv~ViGaG~mG~~iA~~la~-~G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-l- 224 (563)
+|+|||+|.||...+..+.+ .++++. ++|+++++..... ..+.|. -...++++. +
T Consensus 3 rVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~---------A~~~Gi------------~~~~~~~e~ll~ 61 (285)
T TIGR03215 3 KVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLAR---------ARELGV------------KTSAEGVDGLLA 61 (285)
T ss_pred EEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHH---------HHHCCC------------CEEECCHHHHhc
Confidence 79999999999988777764 467766 6788887532111 011221 112234432 2
Q ss_pred -cCCCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCCC
Q 008509 225 -KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 264 (563)
Q Consensus 225 -~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS~ 264 (563)
.+.|+|+.|.|..... +. ....+..+..+.++++.
T Consensus 62 ~~dIDaV~iaTp~~~H~--e~---a~~al~aGk~VIdekPa 97 (285)
T TIGR03215 62 NPDIDIVFDATSAKAHA--RH---ARLLAELGKIVIDLTPA 97 (285)
T ss_pred CCCCCEEEECCCcHHHH--HH---HHHHHHcCCEEEECCcc
Confidence 4689999999977542 22 23344567767666653
No 441
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=93.43 E-value=0.19 Score=48.54 Aligned_cols=33 Identities=24% Similarity=0.253 Sum_probs=29.6
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCC-eEEEEeCCH
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS 180 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~ 180 (563)
++|+|.|.|.+|..+|..|.+.|. .|.+.|.+.
T Consensus 24 ~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g 57 (217)
T cd05211 24 LTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDG 57 (217)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence 689999999999999999999988 566788876
No 442
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=93.42 E-value=0.087 Score=46.68 Aligned_cols=33 Identities=24% Similarity=0.424 Sum_probs=29.8
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCC-eEEEEeCCH
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS 180 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~ 180 (563)
+||.|+|+|.+|+.+|..|++.|+ +++++|.+.
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~ 36 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI 36 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB
T ss_pred CEEEEECcCHHHHHHHHHHHHhCCCceeecCCcc
Confidence 589999999999999999999998 799999763
No 443
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=93.41 E-value=0.076 Score=55.72 Aligned_cols=32 Identities=28% Similarity=0.279 Sum_probs=29.7
Q ss_pred eEEEEcCCcchHHHHHHHHhCCCeEEEEeCCH
Q 008509 149 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNS 180 (563)
Q Consensus 149 kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~ 180 (563)
.|.|||+|.+|.++|..|++.|++|+++|...
T Consensus 2 dvvIIGaGi~G~s~A~~La~~g~~V~l~e~~~ 33 (380)
T TIGR01377 2 DVIVVGAGIMGCFAAYHLAKHGKKTLLLEQFD 33 (380)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence 48999999999999999999999999999853
No 444
>PRK08163 salicylate hydroxylase; Provisional
Probab=93.41 E-value=0.07 Score=56.38 Aligned_cols=34 Identities=35% Similarity=0.419 Sum_probs=32.1
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHH
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE 181 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~ 181 (563)
.+|.|||+|..|...|..|++.|++|+++|++++
T Consensus 5 ~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~ 38 (396)
T PRK08163 5 TPVLIVGGGIGGLAAALALARQGIKVKLLEQAAE 38 (396)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcc
Confidence 5799999999999999999999999999999865
No 445
>PRK05866 short chain dehydrogenase; Provisional
Probab=93.37 E-value=0.16 Score=51.49 Aligned_cols=39 Identities=15% Similarity=0.164 Sum_probs=34.5
Q ss_pred eeEEEEcC-CcchHHHHHHHHhCCCeEEEEeCCHHHHHHH
Q 008509 148 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKG 186 (563)
Q Consensus 148 ~kv~ViGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 186 (563)
++|.|.|+ |.+|..+|..|++.|++|++.+++.+.++..
T Consensus 41 k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~ 80 (293)
T PRK05866 41 KRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAV 80 (293)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence 56888887 9999999999999999999999998876654
No 446
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=93.34 E-value=0.035 Score=55.67 Aligned_cols=31 Identities=16% Similarity=0.363 Sum_probs=28.3
Q ss_pred eEEEEcCCcchHHHHHHHHhCCC-eEEEEeCC
Q 008509 149 KVAVIGGGLMGSGIATAHILNNI-YVVLKEVN 179 (563)
Q Consensus 149 kv~ViGaG~mG~~iA~~la~~G~-~V~l~d~~ 179 (563)
||.|||+|..|+.+|..|+..|+ +++++|.+
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D 32 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSG 32 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence 68999999999999999999998 78888864
No 447
>PRK07774 short chain dehydrogenase; Provisional
Probab=93.29 E-value=0.15 Score=49.79 Aligned_cols=38 Identities=26% Similarity=0.327 Sum_probs=33.8
Q ss_pred eeEEEEcC-CcchHHHHHHHHhCCCeEEEEeCCHHHHHH
Q 008509 148 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLK 185 (563)
Q Consensus 148 ~kv~ViGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~ 185 (563)
++|.|.|+ |.+|..++..|+..|++|++.+++++..+.
T Consensus 7 k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~ 45 (250)
T PRK07774 7 KVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAER 45 (250)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 56889988 999999999999999999999999876544
No 448
>PRK07832 short chain dehydrogenase; Provisional
Probab=93.28 E-value=0.19 Score=50.01 Aligned_cols=38 Identities=16% Similarity=0.188 Sum_probs=33.3
Q ss_pred eEEEEcC-CcchHHHHHHHHhCCCeEEEEeCCHHHHHHH
Q 008509 149 KVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKG 186 (563)
Q Consensus 149 kv~ViGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 186 (563)
++.|+|+ |.+|..++..|++.|++|++++++++.++..
T Consensus 2 ~vlItGas~giG~~la~~la~~G~~vv~~~r~~~~~~~~ 40 (272)
T PRK07832 2 RCFVTGAASGIGRATALRLAAQGAELFLTDRDADGLAQT 40 (272)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 5788887 9999999999999999999999998776553
No 449
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=93.26 E-value=0.36 Score=45.27 Aligned_cols=87 Identities=14% Similarity=0.127 Sum_probs=58.4
Q ss_pred eeEEEEcC-CcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeee--cC----
Q 008509 148 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV--LD---- 220 (563)
Q Consensus 148 ~kv~ViGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~--~~---- 220 (563)
++|.|||- ...|..+|..|.+.|..|++.|++.-..-. ..+.+ +-+.+ .+
T Consensus 63 K~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~~~-------------~~~~~----------~hs~t~~~~~~~~ 119 (197)
T cd01079 63 KTITIINRSEVVGRPLAALLANDGARVYSVDINGIQVFT-------------RGESI----------RHEKHHVTDEEAM 119 (197)
T ss_pred CEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccccc-------------ccccc----------ccccccccchhhH
Confidence 68999998 678999999999999999999876432110 00000 00001 12
Q ss_pred c-ccccCCCEEEEecCCChH-HHHHHHHHHHhhCCCCeEEEecCCC
Q 008509 221 Y-SEFKDVDMVIEAVIESVP-LKQKIFSELEKACPPHCILATNTST 264 (563)
Q Consensus 221 ~-~~l~~aDlVieav~e~~~-~k~~v~~~l~~~~~~~~ii~sntS~ 264 (563)
+ +.++.||+||.|++..-- ++.+ .+++++++++....
T Consensus 120 l~~~~~~ADIVIsAvG~~~~~i~~d-------~ik~GavVIDVGi~ 158 (197)
T cd01079 120 TLDCLSQSDVVITGVPSPNYKVPTE-------LLKDGAICINFASI 158 (197)
T ss_pred HHHHhhhCCEEEEccCCCCCccCHH-------HcCCCcEEEEcCCC
Confidence 2 457999999999985543 4444 46789998876544
No 450
>KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism]
Probab=93.26 E-value=1.1 Score=41.76 Aligned_cols=39 Identities=26% Similarity=0.307 Sum_probs=30.8
Q ss_pred eeEEEE-cC-CcchHHHHHHHHhCCCeEEEEeCCHHHHHHH
Q 008509 148 RKVAVI-GG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKG 186 (563)
Q Consensus 148 ~kv~Vi-Ga-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 186 (563)
.+++++ |+ --+|.+|++.|+++|++|.+.|++.+..+..
T Consensus 14 sk~~~vtGg~sGIGrAia~~la~~Garv~v~dl~~~~A~at 54 (256)
T KOG1200|consen 14 SKVAAVTGGSSGIGRAIAQLLAKKGARVAVADLDSAAAEAT 54 (256)
T ss_pred cceeEEecCCchHHHHHHHHHHhcCcEEEEeecchhhHHHH
Confidence 455544 55 4589999999999999999999998865553
No 451
>PRK07062 short chain dehydrogenase; Provisional
Probab=93.26 E-value=0.17 Score=50.17 Aligned_cols=40 Identities=20% Similarity=0.185 Sum_probs=34.2
Q ss_pred eeEEEEcC-CcchHHHHHHHHhCCCeEEEEeCCHHHHHHHH
Q 008509 148 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGI 187 (563)
Q Consensus 148 ~kv~ViGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (563)
+.+.|.|+ |.+|..+|..|+..|++|++.+++++.++...
T Consensus 9 k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~ 49 (265)
T PRK07062 9 RVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAE 49 (265)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH
Confidence 45777777 78999999999999999999999988776543
No 452
>PRK14852 hypothetical protein; Provisional
Probab=93.22 E-value=0.19 Score=58.04 Aligned_cols=33 Identities=21% Similarity=0.223 Sum_probs=29.8
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCC-eEEEEeCCH
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS 180 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~ 180 (563)
.+|+|||+|-.|+.++..|+..|+ +++++|-|.
T Consensus 333 srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~ 366 (989)
T PRK14852 333 SRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDA 366 (989)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCE
Confidence 589999999999999999999998 788888764
No 453
>PRK06196 oxidoreductase; Provisional
Probab=93.20 E-value=0.2 Score=51.29 Aligned_cols=41 Identities=15% Similarity=0.199 Sum_probs=35.3
Q ss_pred eeEEEEcC-CcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHH
Q 008509 148 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK 188 (563)
Q Consensus 148 ~kv~ViGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~ 188 (563)
++|.|.|+ |.+|..+|..|+..|++|++.+|+++.++....
T Consensus 27 k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~ 68 (315)
T PRK06196 27 KTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPDVAREALA 68 (315)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 56888888 899999999999999999999999887665443
No 454
>PRK07890 short chain dehydrogenase; Provisional
Probab=93.20 E-value=0.2 Score=49.28 Aligned_cols=39 Identities=26% Similarity=0.160 Sum_probs=34.2
Q ss_pred eeEEEEcC-CcchHHHHHHHHhCCCeEEEEeCCHHHHHHH
Q 008509 148 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKG 186 (563)
Q Consensus 148 ~kv~ViGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 186 (563)
++|.|.|+ |.+|..+|..|+..|++|++.+++++.++..
T Consensus 6 k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~ 45 (258)
T PRK07890 6 KVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEV 45 (258)
T ss_pred CEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence 56888887 8999999999999999999999998766554
No 455
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=93.13 E-value=1.6 Score=44.49 Aligned_cols=40 Identities=23% Similarity=0.215 Sum_probs=35.4
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCC-eEEEEeCCHHHHHHHH
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGI 187 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~ 187 (563)
.+|+|+|+|-+|-+-.+.+..+|- .++.+|+++++++.++
T Consensus 187 ~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~ 227 (366)
T COG1062 187 DTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAK 227 (366)
T ss_pred CeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHH
Confidence 579999999999999998888886 7889999999988764
No 456
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=93.13 E-value=0.18 Score=49.52 Aligned_cols=39 Identities=26% Similarity=0.260 Sum_probs=34.9
Q ss_pred eeEEEEcC-CcchHHHHHHHHhCCCeEEEEeCCHHHHHHH
Q 008509 148 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKG 186 (563)
Q Consensus 148 ~kv~ViGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 186 (563)
++|.|.|+ |.+|..++..|+..|++|++++++++..+..
T Consensus 5 ~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~ 44 (258)
T PRK12429 5 KVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAA 44 (258)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHH
Confidence 57889986 9999999999999999999999998876654
No 457
>PRK06753 hypothetical protein; Provisional
Probab=93.12 E-value=0.086 Score=55.22 Aligned_cols=34 Identities=29% Similarity=0.270 Sum_probs=31.9
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHH
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE 181 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~ 181 (563)
++|.|||+|.-|...|..|+++|++|+++++++.
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~ 34 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNES 34 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 3799999999999999999999999999999875
No 458
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=93.11 E-value=0.081 Score=60.08 Aligned_cols=33 Identities=36% Similarity=0.555 Sum_probs=31.1
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCH
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNS 180 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~ 180 (563)
.+|.|||+|.+|.++|..|++.|++|+++|++.
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~ 293 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALARRGWQVTLYEADE 293 (662)
T ss_pred CCEEEECccHHHHHHHHHHHHCCCeEEEEecCC
Confidence 479999999999999999999999999999874
No 459
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=93.09 E-value=1.2 Score=44.89 Aligned_cols=33 Identities=30% Similarity=0.421 Sum_probs=30.3
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCC-eEEEEeCCH
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS 180 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~ 180 (563)
.+|.|+|+|.+|.-+|..|+.+|. +|+++|.+.
T Consensus 20 s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ 53 (286)
T cd01491 20 SNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKP 53 (286)
T ss_pred CcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Confidence 579999999999999999999998 699999764
No 460
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=93.03 E-value=0.1 Score=54.83 Aligned_cols=35 Identities=26% Similarity=0.319 Sum_probs=32.3
Q ss_pred ceeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHH
Q 008509 147 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE 181 (563)
Q Consensus 147 ~~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~ 181 (563)
..+|+|||+|.+|.+.|..|++.|++|+++|....
T Consensus 4 ~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~ 38 (387)
T COG0665 4 KMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEA 38 (387)
T ss_pred cceEEEECCcHHHHHHHHHHHHcCCEEEEEecCcc
Confidence 46899999999999999999999999999998763
No 461
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=93.03 E-value=0.46 Score=49.02 Aligned_cols=73 Identities=19% Similarity=0.140 Sum_probs=48.1
Q ss_pred cceeEEEEcCCcch-HHHHHHHHhCCC---eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCc
Q 008509 146 GVRKVAVIGGGLMG-SGIATAHILNNI---YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY 221 (563)
Q Consensus 146 ~~~kv~ViGaG~mG-~~iA~~la~~G~---~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 221 (563)
+..||+|||+|.++ ...+..+...+. -|.++|+++++++...+. -|. -...+|+
T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~----------~~~------------~~~~~~~ 59 (342)
T COG0673 2 KMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEE----------FGI------------AKAYTDL 59 (342)
T ss_pred CeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHH----------cCC------------CcccCCH
Confidence 35689999998544 557777777653 466889999987654321 110 0234555
Q ss_pred c-cc--cCCCEEEEecCCChHH
Q 008509 222 S-EF--KDVDMVIEAVIESVPL 240 (563)
Q Consensus 222 ~-~l--~~aDlVieav~e~~~~ 240 (563)
+ .+ .+.|+|+.|+|.+...
T Consensus 60 ~~ll~~~~iD~V~Iatp~~~H~ 81 (342)
T COG0673 60 EELLADPDIDAVYIATPNALHA 81 (342)
T ss_pred HHHhcCCCCCEEEEcCCChhhH
Confidence 4 33 3479999999988654
No 462
>PRK06057 short chain dehydrogenase; Provisional
Probab=93.02 E-value=0.16 Score=50.02 Aligned_cols=38 Identities=21% Similarity=0.252 Sum_probs=34.0
Q ss_pred eeEEEEcC-CcchHHHHHHHHhCCCeEEEEeCCHHHHHH
Q 008509 148 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLK 185 (563)
Q Consensus 148 ~kv~ViGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~ 185 (563)
++|.|+|+ |.+|..++..+++.|++|++.++++...+.
T Consensus 8 ~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~~~~~ 46 (255)
T PRK06057 8 RVAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAGKA 46 (255)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 67999998 999999999999999999999999876544
No 463
>PRK07411 hypothetical protein; Validated
Probab=92.94 E-value=0.081 Score=55.87 Aligned_cols=33 Identities=21% Similarity=0.252 Sum_probs=30.2
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCC-eEEEEeCCH
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS 180 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~ 180 (563)
.+|.|||+|..|+.+|..|+..|+ +++++|.+.
T Consensus 39 ~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ 72 (390)
T PRK07411 39 ASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDV 72 (390)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 579999999999999999999998 799999863
No 464
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=92.93 E-value=0.2 Score=49.31 Aligned_cols=41 Identities=17% Similarity=0.161 Sum_probs=35.9
Q ss_pred eeEEEEcC-CcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHH
Q 008509 148 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK 188 (563)
Q Consensus 148 ~kv~ViGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~ 188 (563)
++|.|.|+ |.+|..++..|++.|++|++.+++++..+...+
T Consensus 8 ~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~ 49 (262)
T PRK13394 8 KTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVAD 49 (262)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Confidence 57888888 999999999999999999999999987666543
No 465
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=92.92 E-value=0.88 Score=44.11 Aligned_cols=32 Identities=19% Similarity=0.227 Sum_probs=29.9
Q ss_pred EEEEcC-CcchHHHHHHHHhCCCeEEEEeCCHH
Q 008509 150 VAVIGG-GLMGSGIATAHILNNIYVVLKEVNSE 181 (563)
Q Consensus 150 v~ViGa-G~mG~~iA~~la~~G~~V~l~d~~~~ 181 (563)
|+|+|+ |..|+.++..|...|++|.+.-|++.
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~ 33 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPS 33 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSH
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEeccc
Confidence 789997 99999999999999999999999874
No 466
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=92.89 E-value=0.46 Score=46.01 Aligned_cols=39 Identities=26% Similarity=0.292 Sum_probs=34.5
Q ss_pred eeEEEEcC-CcchHHHHHHHHhCCCeEEEEeCCHHHHHHH
Q 008509 148 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKG 186 (563)
Q Consensus 148 ~kv~ViGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 186 (563)
++|.|.|+ |.+|..+++.|++.|++|++.+++++.++..
T Consensus 6 ~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~ 45 (238)
T PRK05786 6 KKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRM 45 (238)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 57899988 8899999999999999999999998876543
No 467
>cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=92.88 E-value=0.55 Score=50.13 Aligned_cols=98 Identities=15% Similarity=0.060 Sum_probs=59.1
Q ss_pred eeEEEEcC-CcchHHHHHHHHhC---C----CeEEEEeC--CHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeee
Q 008509 148 RKVAVIGG-GLMGSGIATAHILN---N----IYVVLKEV--NSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG 217 (563)
Q Consensus 148 ~kv~ViGa-G~mG~~iA~~la~~---G----~~V~l~d~--~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~ 217 (563)
-+|+|-|+ |.+|-++...+++- | +.++|+|+ +.+.++.-.-.+.+... ..+..+..
T Consensus 124 ~~V~vtgAag~i~Y~l~~~ia~G~~fG~~~~v~L~LlDi~~~~~~l~G~amDL~D~a~--------------pll~~v~i 189 (452)
T cd05295 124 LQVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPENLEKLKGLVMEVEDLAF--------------PLLRGISV 189 (452)
T ss_pred eEEEEecCcHHHHHHHHHHHhCCcccCCCCeEEEEEEcCCCchhhHHHHHHHHHHhHH--------------hhcCCcEE
Confidence 46999998 99999998888873 4 35888999 56555443222221110 11122232
Q ss_pred -ecCcccccCCCEEEEecC--------------CChHHHHHHHHHHHhhCCC-CeEEE
Q 008509 218 -VLDYSEFKDVDMVIEAVI--------------ESVPLKQKIFSELEKACPP-HCILA 259 (563)
Q Consensus 218 -~~~~~~l~~aDlVieav~--------------e~~~~k~~v~~~l~~~~~~-~~ii~ 259 (563)
+.+++++++||+||.+.- .|..+.+.+-..|.++.++ ..|++
T Consensus 190 ~~~~~ea~~daDvvIitag~prk~G~~R~DLL~~N~~Ifk~~g~~I~~~a~~~~~VlV 247 (452)
T cd05295 190 TTDLDVAFKDAHVIVLLDDFLIKEGEDLEGCIRSRVAICQLYGPLIEKNAKEDVKVIV 247 (452)
T ss_pred EECCHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEE
Confidence 456799999999998652 1223344455567777763 34443
No 468
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=92.87 E-value=0.11 Score=54.98 Aligned_cols=34 Identities=29% Similarity=0.435 Sum_probs=31.5
Q ss_pred ceeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCH
Q 008509 147 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNS 180 (563)
Q Consensus 147 ~~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~ 180 (563)
...|.|||+|..|.+.|..|++.|++|+++|+++
T Consensus 6 ~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~ 39 (392)
T PRK08773 6 RRDAVIVGGGVVGAACALALADAGLSVALVEGRE 39 (392)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCC
Confidence 3579999999999999999999999999999975
No 469
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=92.85 E-value=0.11 Score=54.36 Aligned_cols=32 Identities=25% Similarity=0.400 Sum_probs=29.9
Q ss_pred eEEEEcCCcchHHHHHHHHhCCCeEEEEeCCH
Q 008509 149 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNS 180 (563)
Q Consensus 149 kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~ 180 (563)
.|.|||+|.+|.+.|..|++.|++|+++|...
T Consensus 2 dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~ 33 (365)
T TIGR03364 2 DLIIVGAGILGLAHAYAAARRGLSVTVIERSS 33 (365)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 48999999999999999999999999999864
No 470
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=92.81 E-value=0.55 Score=46.79 Aligned_cols=128 Identities=13% Similarity=0.171 Sum_probs=73.5
Q ss_pred eeEEEEcCCcchHHHHHHHHhC----CC-------eEEEEeCCHHHHHH--HHHHHHHHHHHHHHcCCCCHHHHHhhhcC
Q 008509 148 RKVAVIGGGLMGSGIATAHILN----NI-------YVVLKEVNSEYLLK--GIKTIEANVRGLVTRGKLTQDKANNALKM 214 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~----G~-------~V~l~d~~~~~~~~--~~~~i~~~~~~~~~~g~~~~~~~~~~~~~ 214 (563)
.||.|+|+|.-|.+||..|... |. +++++|++---.+. -+...+..+. +.. ..
T Consensus 26 ~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r~~l~~~~~~~a---~~~-----------~~ 91 (279)
T cd05312 26 QRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRKDLTPFKKPFA---RKD-----------EE 91 (279)
T ss_pred cEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCCCcchHHHHHHH---hhc-----------Cc
Confidence 6899999999999999988876 87 78999985200000 0011111111 100 00
Q ss_pred eeeecCc-cccc--CCCEEEEecCCChHHHHHHHHHHHhhCCCCeEEE-ecCCC---CCHHHHhhhccCCCceeecccCC
Q 008509 215 LKGVLDY-SEFK--DVDMVIEAVIESVPLKQKIFSELEKACPPHCILA-TNTST---IDLNIVGEKTSSQDRIIGAHFFS 287 (563)
Q Consensus 215 i~~~~~~-~~l~--~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~-sntS~---l~i~~la~~~~~~~r~ig~hf~~ 287 (563)
....++ +.++ ++|++|=+-...-.+++++++...+++..-.||+ ||-+. ...++..+...-..-|....+|.
T Consensus 92 -~~~~~L~e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~~E~~pe~a~~~t~G~ai~ATGsPf~ 170 (279)
T cd05312 92 -KEGKSLLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSNERPIIFALSNPTSKAECTAEDAYKWTDGRALFASGSPFP 170 (279)
T ss_pred -ccCCCHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCCCCEEEECCCcCCccccCHHHHHHhhcCCEEEEeCCCCC
Confidence 011234 5666 7888886542222467788898888887777775 66443 34555544432222233346777
Q ss_pred CCC
Q 008509 288 PAH 290 (563)
Q Consensus 288 P~~ 290 (563)
|+.
T Consensus 171 pv~ 173 (279)
T cd05312 171 PVE 173 (279)
T ss_pred Cee
Confidence 764
No 471
>PRK06847 hypothetical protein; Provisional
Probab=92.79 E-value=0.099 Score=54.74 Aligned_cols=35 Identities=40% Similarity=0.536 Sum_probs=32.5
Q ss_pred ceeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHH
Q 008509 147 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE 181 (563)
Q Consensus 147 ~~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~ 181 (563)
+.+|+|||+|.-|...|..|++.|++|+++|++++
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~ 38 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPE 38 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 56899999999999999999999999999998764
No 472
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=92.79 E-value=0.1 Score=55.17 Aligned_cols=33 Identities=24% Similarity=0.360 Sum_probs=30.7
Q ss_pred eeEEEEcCCcchHHHHHHHHhC--CCeEEEEeCCH
Q 008509 148 RKVAVIGGGLMGSGIATAHILN--NIYVVLKEVNS 180 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~--G~~V~l~d~~~ 180 (563)
..|+|||+|.+|.++|..|++. |++|+++|+..
T Consensus 3 ~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~ 37 (393)
T PRK11728 3 YDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKES 37 (393)
T ss_pred ccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence 4699999999999999999998 99999999874
No 473
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=92.77 E-value=0.11 Score=55.07 Aligned_cols=35 Identities=34% Similarity=0.386 Sum_probs=31.6
Q ss_pred ceeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHH
Q 008509 147 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE 181 (563)
Q Consensus 147 ~~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~ 181 (563)
+++|.|||+|..|...|..|++.|++|+++|..+.
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~ 36 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPV 36 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCc
Confidence 46899999999999999999999999999996443
No 474
>PRK07825 short chain dehydrogenase; Provisional
Probab=92.70 E-value=0.26 Score=49.08 Aligned_cols=39 Identities=21% Similarity=0.244 Sum_probs=34.5
Q ss_pred eeEEEEcC-CcchHHHHHHHHhCCCeEEEEeCCHHHHHHH
Q 008509 148 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKG 186 (563)
Q Consensus 148 ~kv~ViGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 186 (563)
++|.|.|+ |.+|..++..|++.|++|++.+++++.++..
T Consensus 6 ~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~ 45 (273)
T PRK07825 6 KVVAITGGARGIGLATARALAALGARVAIGDLDEALAKET 45 (273)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence 56888888 9999999999999999999999999876653
No 475
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.69 E-value=0.27 Score=53.45 Aligned_cols=37 Identities=30% Similarity=0.283 Sum_probs=33.2
Q ss_pred cceeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHHH
Q 008509 146 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY 182 (563)
Q Consensus 146 ~~~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~ 182 (563)
..++|.|+|+|..|.++|..|.+.|++|+++|++...
T Consensus 14 ~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~ 50 (473)
T PRK00141 14 LSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETA 50 (473)
T ss_pred cCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHH
Confidence 3478999999999999999999999999999987643
No 476
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=92.66 E-value=0.2 Score=49.14 Aligned_cols=38 Identities=24% Similarity=0.197 Sum_probs=33.5
Q ss_pred eeEEEEcC-CcchHHHHHHHHhCCCeEEEEeCCHHHHHH
Q 008509 148 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLK 185 (563)
Q Consensus 148 ~kv~ViGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~ 185 (563)
++|.|+|+ |..|..+|..|+..|++|++.+++++.++.
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~ 39 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQE 39 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHH
Confidence 36889987 999999999999999999999999876554
No 477
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=92.62 E-value=0.33 Score=50.40 Aligned_cols=100 Identities=19% Similarity=0.212 Sum_probs=58.3
Q ss_pred eeEEEEcC-CcchHHHHHHHHhC-CCeEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeee-cCccc
Q 008509 148 RKVAVIGG-GLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV-LDYSE 223 (563)
Q Consensus 148 ~kv~ViGa-G~mG~~iA~~la~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~ 223 (563)
+||+|||+ |.+|..+...|.+. +++++ +++.+.+.-+. +...+ +.+.. . ...... .+.+.
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~----~~~~~------~~l~~-----~-~~~~~~~~~~~~ 64 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKP----VSEVH------PHLRG-----L-VDLNLEPIDEEE 64 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCC----hHHhC------ccccc-----c-CCceeecCCHHH
Confidence 37999999 99999999999977 77888 55655422111 11100 10000 0 001111 12233
Q ss_pred c-cCCCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHH
Q 008509 224 F-KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN 268 (563)
Q Consensus 224 l-~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS~l~i~ 268 (563)
+ .++|+||.|+|.... +++..++ ...++.|+++++...+.
T Consensus 65 ~~~~~DvVf~alP~~~s--~~~~~~~---~~~G~~VIDlS~~fR~~ 105 (346)
T TIGR01850 65 IAEDADVVFLALPHGVS--AELAPEL---LAAGVKVIDLSADFRLK 105 (346)
T ss_pred hhcCCCEEEECCCchHH--HHHHHHH---HhCCCEEEeCChhhhcC
Confidence 3 589999999997632 3443333 34678888988876543
No 478
>PRK05650 short chain dehydrogenase; Provisional
Probab=92.61 E-value=0.24 Score=49.29 Aligned_cols=39 Identities=23% Similarity=0.258 Sum_probs=34.1
Q ss_pred eEEEEcC-CcchHHHHHHHHhCCCeEEEEeCCHHHHHHHH
Q 008509 149 KVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGI 187 (563)
Q Consensus 149 kv~ViGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (563)
+|.|+|+ |.+|..++..|++.|++|++.+++.+.++...
T Consensus 2 ~vlVtGasggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~ 41 (270)
T PRK05650 2 RVMITGAASGLGRAIALRWAREGWRLALADVNEEGGEETL 41 (270)
T ss_pred EEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 5788887 99999999999999999999999987766543
No 479
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=92.59 E-value=0.11 Score=55.24 Aligned_cols=33 Identities=42% Similarity=0.527 Sum_probs=30.9
Q ss_pred eEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHH
Q 008509 149 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE 181 (563)
Q Consensus 149 kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~ 181 (563)
+|+|||+|..|...|..|++.|++|++++..+.
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~ 34 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPE 34 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEecccc
Confidence 699999999999999999999999999997655
No 480
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.54 E-value=0.33 Score=48.59 Aligned_cols=72 Identities=17% Similarity=0.182 Sum_probs=53.1
Q ss_pred eeEEEEcCCc-chHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCc-cccc
Q 008509 148 RKVAVIGGGL-MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 225 (563)
Q Consensus 148 ~kv~ViGaG~-mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 225 (563)
++|.|||-+. .|..+|..|.+.|..|++.+..-. |+ +.++
T Consensus 165 k~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T~--------------------------------------~l~~~~~ 206 (287)
T PRK14176 165 KNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFTD--------------------------------------DLKKYTL 206 (287)
T ss_pred CEEEEECCCcccHHHHHHHHHHCCCEEEEEeccCC--------------------------------------CHHHHHh
Confidence 6899999977 999999999999999999884321 22 2457
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCCC
Q 008509 226 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 264 (563)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS~ 264 (563)
+||+||.|+.-.--++. ..+++++++.+..++
T Consensus 207 ~ADIvv~AvG~p~~i~~-------~~vk~gavVIDvGin 238 (287)
T PRK14176 207 DADILVVATGVKHLIKA-------DMVKEGAVIFDVGIT 238 (287)
T ss_pred hCCEEEEccCCccccCH-------HHcCCCcEEEEeccc
Confidence 89999998753322222 257899998876543
No 481
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=92.51 E-value=0.17 Score=49.79 Aligned_cols=39 Identities=13% Similarity=0.227 Sum_probs=34.2
Q ss_pred eeEEEEcC-CcchHHHHHHHHhCCCeEEEEeCCHHHHHHH
Q 008509 148 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKG 186 (563)
Q Consensus 148 ~kv~ViGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 186 (563)
++|.|.|+ |.+|..+|..|++.|++|++.+++.+.++..
T Consensus 7 ~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~ 46 (257)
T PRK07067 7 KVALLTGAASGIGEAVAERYLAEGARVVIADIKPARARLA 46 (257)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHH
Confidence 46888887 9999999999999999999999998876553
No 482
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.50 E-value=0.35 Score=48.39 Aligned_cols=70 Identities=14% Similarity=0.193 Sum_probs=52.5
Q ss_pred eeEEEEcCCc-chHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeecCc-cccc
Q 008509 148 RKVAVIGGGL-MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 225 (563)
Q Consensus 148 ~kv~ViGaG~-mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 225 (563)
++|.|||-|. .|..+|..|.+.|..|++....-. ++ +.++
T Consensus 160 k~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T~--------------------------------------~l~~~~~ 201 (285)
T PRK10792 160 LNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFTK--------------------------------------NLRHHVR 201 (285)
T ss_pred CEEEEECCCcccHHHHHHHHHHCCCeEEEEECCCC--------------------------------------CHHHHHh
Confidence 6899999977 999999999999999999875421 12 2467
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecC
Q 008509 226 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNT 262 (563)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~snt 262 (563)
+||+||.|+.-.--++. ..+++++++.+..
T Consensus 202 ~ADIvi~avG~p~~v~~-------~~vk~gavVIDvG 231 (285)
T PRK10792 202 NADLLVVAVGKPGFIPG-------EWIKPGAIVIDVG 231 (285)
T ss_pred hCCEEEEcCCCcccccH-------HHcCCCcEEEEcc
Confidence 89999999943222222 5678999887643
No 483
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.47 E-value=0.23 Score=54.18 Aligned_cols=35 Identities=17% Similarity=0.196 Sum_probs=31.8
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHHH
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY 182 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~ 182 (563)
++|.|+|+|..|.+.+..|...|++|+++|.+++.
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~ 47 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDA 47 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence 68999999999999999999999999999987654
No 484
>PRK07588 hypothetical protein; Provisional
Probab=92.46 E-value=0.11 Score=54.79 Aligned_cols=34 Identities=29% Similarity=0.227 Sum_probs=31.5
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHH
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE 181 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~ 181 (563)
++|.|||+|..|.+.|..|++.|++|+++|+.++
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 34 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPE 34 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCC
Confidence 3799999999999999999999999999998764
No 485
>PRK06475 salicylate hydroxylase; Provisional
Probab=92.46 E-value=0.11 Score=55.17 Aligned_cols=34 Identities=21% Similarity=0.205 Sum_probs=32.0
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHH
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE 181 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~ 181 (563)
+||+|||+|.-|...|..|++.|++|+++|+.++
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~ 36 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQE 36 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 6899999999999999999999999999998764
No 486
>PRK14982 acyl-ACP reductase; Provisional
Probab=92.44 E-value=0.27 Score=50.58 Aligned_cols=38 Identities=26% Similarity=0.301 Sum_probs=32.8
Q ss_pred eeEEEEcC-CcchHHHHHHHHhC-C-CeEEEEeCCHHHHHH
Q 008509 148 RKVAVIGG-GLMGSGIATAHILN-N-IYVVLKEVNSEYLLK 185 (563)
Q Consensus 148 ~kv~ViGa-G~mG~~iA~~la~~-G-~~V~l~d~~~~~~~~ 185 (563)
++|.|+|+ |.||+.++..|+.. | .+|++++++++++..
T Consensus 156 k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~ 196 (340)
T PRK14982 156 ATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQE 196 (340)
T ss_pred CEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHH
Confidence 68999999 89999999999864 5 589999999887655
No 487
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=92.43 E-value=0.12 Score=54.40 Aligned_cols=34 Identities=32% Similarity=0.351 Sum_probs=31.5
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHH
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE 181 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~ 181 (563)
.+|.|||+|..|...|..|+++|++|+++|+++.
T Consensus 8 ~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~ 41 (388)
T PRK07494 8 TDIAVIGGGPAGLAAAIALARAGASVALVAPEPP 41 (388)
T ss_pred CCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCC
Confidence 4699999999999999999999999999999753
No 488
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.35 E-value=0.79 Score=49.35 Aligned_cols=34 Identities=21% Similarity=0.109 Sum_probs=31.4
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHH
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE 181 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~ 181 (563)
++|.|+|+|.+|.++|..|++.|++|++.|.+..
T Consensus 6 k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~ 39 (447)
T PRK02472 6 KKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPF 39 (447)
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCc
Confidence 5799999999999999999999999999998754
No 489
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=92.35 E-value=0.25 Score=49.26 Aligned_cols=38 Identities=21% Similarity=0.343 Sum_probs=33.0
Q ss_pred eeEEEEcC-CcchHHHHHHHHhCCCeEEEEeCCHHHHHH
Q 008509 148 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLK 185 (563)
Q Consensus 148 ~kv~ViGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~ 185 (563)
+++.|.|+ |.+|..++..|++.|++|++++++.+..+.
T Consensus 11 k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~ 49 (278)
T PRK08277 11 KVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEA 49 (278)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 46778887 899999999999999999999999876554
No 490
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=92.34 E-value=0.093 Score=57.83 Aligned_cols=32 Identities=22% Similarity=0.372 Sum_probs=29.4
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCC-eEEEEeCC
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVN 179 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~-~V~l~d~~ 179 (563)
.||.|||+|..|+.+|..|+..|+ +++++|.+
T Consensus 339 ~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D 371 (664)
T TIGR01381 339 LKVLLLGAGTLGCNVARCLIGWGVRHITFVDNG 371 (664)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 489999999999999999999998 78899864
No 491
>PRK09414 glutamate dehydrogenase; Provisional
Probab=92.28 E-value=0.41 Score=51.10 Aligned_cols=81 Identities=15% Similarity=0.091 Sum_probs=50.5
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCCeEEEE-e----------CCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCee
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNIYVVLK-E----------VNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLK 216 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~~V~l~-d----------~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~ 216 (563)
.+|+|.|.|.+|...|..|...|.+|+.+ | +|.+.+.+..+. .+|.+.. ..... ...
T Consensus 233 ~rVaIqGfGnVG~~~A~~L~~~GakVVavsDs~G~iyn~~GLD~~~L~~~k~~---------~~~~l~~--~~~~~-~~~ 300 (445)
T PRK09414 233 KRVVVSGSGNVAIYAIEKAQQLGAKVVTCSDSSGYVYDEEGIDLEKLKEIKEV---------RRGRISE--YAEEF-GAE 300 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHh---------cCCchhh--hhhhc-CCe
Confidence 58999999999999999999999999987 8 676655442210 0111111 00000 011
Q ss_pred eecCccc-ccCCCEEEEecCCChHH
Q 008509 217 GVLDYSE-FKDVDMVIEAVIESVPL 240 (563)
Q Consensus 217 ~~~~~~~-l~~aDlVieav~e~~~~ 240 (563)
..++-+. -.+||+.|.|..++..-
T Consensus 301 ~i~~~~i~~~d~DVliPaAl~n~It 325 (445)
T PRK09414 301 YLEGGSPWSVPCDIALPCATQNELD 325 (445)
T ss_pred ecCCccccccCCcEEEecCCcCcCC
Confidence 1122222 24899999999988643
No 492
>PRK07538 hypothetical protein; Provisional
Probab=92.21 E-value=0.13 Score=54.90 Aligned_cols=34 Identities=35% Similarity=0.413 Sum_probs=31.7
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHH
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE 181 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~ 181 (563)
++|.|||+|.-|...|..|+++|++|+++|++++
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 34 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPE 34 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCc
Confidence 3699999999999999999999999999999864
No 493
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=92.17 E-value=0.31 Score=48.09 Aligned_cols=40 Identities=28% Similarity=0.299 Sum_probs=34.8
Q ss_pred eEEEEcC-CcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHH
Q 008509 149 KVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK 188 (563)
Q Consensus 149 kv~ViGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~ 188 (563)
+|.|.|+ |.+|.++|..|++.|++|++.+++++.++...+
T Consensus 2 ~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~ 42 (259)
T PRK08340 2 NVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKALK 42 (259)
T ss_pred eEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence 6888887 889999999999999999999999887765443
No 494
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=92.17 E-value=0.53 Score=55.47 Aligned_cols=167 Identities=13% Similarity=0.057 Sum_probs=85.3
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCC------eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhh----cC--e
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNI------YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNAL----KM--L 215 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~------~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~----~~--i 215 (563)
.+|.|||+|..|+-++..|+..|+ +++++|.+.=.......++ +-+.-.-|+...+.+...+ .. +
T Consensus 420 ~kVlvvGaGGlG~e~lknLal~Gv~~~~~G~i~IvD~D~Ve~SNLnRQf---Lf~~~dIGk~Ka~vaa~~l~~~Np~v~I 496 (1008)
T TIGR01408 420 LNIFLVGCGAIGCEMLKNFALMGVGTGKKGMITVTDPDLIEKSNLNRQF---LFRPHHIGKPKSYTAADATLKINPQIKI 496 (1008)
T ss_pred CcEEEECCChHHHHHHHHHHHhCCCcCCCCeEEEECCCEecccccCcCc---CCChhHcCcHHHHHHHHHHHHHCCCCEE
Confidence 479999999999999999999998 8999997532111100000 0000000110000011000 01 1
Q ss_pred eeec--------C---cccccCCCEEEEecCCChHHHHHHHHHHHhhCCCCeEEE-ecCCCCCHHHHhhhccCCCceeec
Q 008509 216 KGVL--------D---YSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA-TNTSTIDLNIVGEKTSSQDRIIGA 283 (563)
Q Consensus 216 ~~~~--------~---~~~l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~-sntS~l~i~~la~~~~~~~r~ig~ 283 (563)
.... + .+-+.+.|+||.|+- +.+.+.-+-+.... .+..++ +.|.+. -....-..++-....+.
T Consensus 497 ~~~~~~v~~~~e~i~~~~f~~~~dvVi~alD-n~~aR~~vn~~c~~---~~iPli~~gt~G~-~G~v~v~ip~~te~y~~ 571 (1008)
T TIGR01408 497 DAHQNRVGPETETIFNDEFYEKLDVVINALD-NVEARRYVDSRCLA---FLKPLLESGTLGT-KGNTQVVVPHLTESYGS 571 (1008)
T ss_pred EEEEeecChhhhhhhhHHHhhCCCEEEECCC-CHHHHHHHHHHHHH---cCCCEEEEeccCc-eeeEEEEeCCCcCCCCC
Confidence 1110 1 123478999999874 45544333222222 233333 333322 11111112222223445
Q ss_pred ccCCCCCCCCeEEEEeCCCCCHHHHHHHHHHHHHh-CCce
Q 008509 284 HFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKII-KKVP 322 (563)
Q Consensus 284 hf~~P~~~~~lvEiv~~~~t~~~~~~~~~~l~~~l-Gk~~ 322 (563)
|.-.|....|++++-..+..-...+..++.++..+ +..|
T Consensus 572 ~~d~~~~~~P~Ctl~~~P~~~~h~i~wa~~~f~~~F~~~~ 611 (1008)
T TIGR01408 572 SRDPPEKEIPFCTLKSFPAAIEHTIQWARDKFEGLFSHKP 611 (1008)
T ss_pred CCCCCCCCCCcccccCCCCCchHHHHHHHHHHHHHHHhhH
Confidence 54434445788888888888888999999988763 4444
No 495
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=92.15 E-value=0.18 Score=52.15 Aligned_cols=93 Identities=23% Similarity=0.217 Sum_probs=57.0
Q ss_pred eeEEEEcC-CcchHHHHHHHHhCCCeE---EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcCeeeec-Ccc
Q 008509 148 RKVAVIGG-GLMGSGIATAHILNNIYV---VLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL-DYS 222 (563)
Q Consensus 148 ~kv~ViGa-G~mG~~iA~~la~~G~~V---~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-~~~ 222 (563)
.||+|+|+ |..|.-+...|+++||++ ..+.++.+.-+.. . + .+ ..+.... +..
T Consensus 2 ~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l----~--~-----~g-----------~~i~v~d~~~~ 59 (334)
T PRK14874 2 YNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKEL----S--F-----KG-----------KELKVEDLTTF 59 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCee----e--e-----CC-----------ceeEEeeCCHH
Confidence 58999999 999999999999988864 5554443221110 0 0 01 0122211 113
Q ss_pred cccCCCEEEEecCCChHHHHHHHHHHHhhCCCCeEEEecCCCCCH
Q 008509 223 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL 267 (563)
Q Consensus 223 ~l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~sntS~l~i 267 (563)
.+.++|+||+|+|... -+++..++ ...+++|++++|....
T Consensus 60 ~~~~vDvVf~A~g~g~--s~~~~~~~---~~~G~~VIDlS~~~R~ 99 (334)
T PRK14874 60 DFSGVDIALFSAGGSV--SKKYAPKA---AAAGAVVIDNSSAFRM 99 (334)
T ss_pred HHcCCCEEEECCChHH--HHHHHHHH---HhCCCEEEECCchhhc
Confidence 4578999999998653 33444443 3457788888776543
No 496
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=92.15 E-value=0.14 Score=54.11 Aligned_cols=32 Identities=31% Similarity=0.357 Sum_probs=30.9
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCCeEEEEeCC
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVN 179 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~ 179 (563)
..|.|||+|..|..+|..|+++|++|+++|+.
T Consensus 3 ~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~ 34 (387)
T COG0654 3 LDVAIVGAGPAGLALALALARAGLDVTLLERA 34 (387)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Confidence 57999999999999999999999999999998
No 497
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=92.14 E-value=0.14 Score=53.88 Aligned_cols=32 Identities=31% Similarity=0.414 Sum_probs=30.2
Q ss_pred eeEEEEcCCcchHHHHHHHHhC---CCeEEEEeCC
Q 008509 148 RKVAVIGGGLMGSGIATAHILN---NIYVVLKEVN 179 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~---G~~V~l~d~~ 179 (563)
.+|.|||+|..|...|..|++. |++|+++|+.
T Consensus 4 ~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~ 38 (395)
T PRK05732 4 MDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF 38 (395)
T ss_pred CCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence 5799999999999999999998 9999999994
No 498
>PRK08013 oxidoreductase; Provisional
Probab=92.13 E-value=0.13 Score=54.55 Aligned_cols=34 Identities=24% Similarity=0.366 Sum_probs=31.7
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCCeEEEEeCCHH
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE 181 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~ 181 (563)
..|.|||+|..|...|..|++.|++|+++|+.+.
T Consensus 4 ~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~ 37 (400)
T PRK08013 4 VDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVP 37 (400)
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCC
Confidence 4699999999999999999999999999999865
No 499
>PRK06139 short chain dehydrogenase; Provisional
Probab=92.08 E-value=0.25 Score=50.96 Aligned_cols=41 Identities=22% Similarity=0.208 Sum_probs=35.8
Q ss_pred eeEEEEcC-CcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHH
Q 008509 148 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK 188 (563)
Q Consensus 148 ~kv~ViGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~ 188 (563)
++|.|.|+ |.+|..+|..|++.|++|++.+++++.++...+
T Consensus 8 k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~ 49 (330)
T PRK06139 8 AVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAE 49 (330)
T ss_pred CEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 56788888 899999999999999999999999988776543
No 500
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=92.07 E-value=0.73 Score=45.23 Aligned_cols=129 Identities=13% Similarity=0.124 Sum_probs=70.9
Q ss_pred eeEEEEcCCcchHHHHHHHHhCCC-----------eEEEEeCCHHHHHH--HHHHHHHHHHHHHHcCCCCHHHHHhhhcC
Q 008509 148 RKVAVIGGGLMGSGIATAHILNNI-----------YVVLKEVNSEYLLK--GIKTIEANVRGLVTRGKLTQDKANNALKM 214 (563)
Q Consensus 148 ~kv~ViGaG~mG~~iA~~la~~G~-----------~V~l~d~~~~~~~~--~~~~i~~~~~~~~~~g~~~~~~~~~~~~~ 214 (563)
+||.|+|+|.-|.+||..|...+. +++++|+.---.+. -.....+.+.+..+.
T Consensus 26 ~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r~~l~~~~~~~~~~~~~-------------- 91 (254)
T cd00762 26 HKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNRKETCPNEYHLARFANP-------------- 91 (254)
T ss_pred cEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCCCccCHHHHHHHHHcCc--------------
Confidence 689999999999999999987764 58888874100000 000000111001110
Q ss_pred eeeecCc-cccc--CCCEEEEecCCChHHHHHHHHHHHhhCCCCeEEE-ecCCC---CCHHHHhhhccCCCceeecccCC
Q 008509 215 LKGVLDY-SEFK--DVDMVIEAVIESVPLKQKIFSELEKACPPHCILA-TNTST---IDLNIVGEKTSSQDRIIGAHFFS 287 (563)
Q Consensus 215 i~~~~~~-~~l~--~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~-sntS~---l~i~~la~~~~~~~r~ig~hf~~ 287 (563)
-....++ +.++ ++|++|=+-.-.-.+.+++++.+.++++.-.||+ ||-++ ...++..+...-..-|....+|.
T Consensus 92 ~~~~~~L~eav~~~kptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~aE~tpe~a~~~t~G~ai~AtGspf~ 171 (254)
T cd00762 92 ERESGDLEDAVEAAKPDFLIGVSRVGGAFTPEVIRAXAEINERPVIFALSNPTSKAECTAEEAYTATEGRAIFASGSPFH 171 (254)
T ss_pred ccccCCHHHHHHhhCCCEEEEeCCCCCCCCHHHHHHHhhcCCCCEEEECCCcCCccccCHHHHHhhcCCCEEEEECCCCC
Confidence 0112344 4666 7888885432122467788888888887767775 56443 45555555442222233345666
Q ss_pred CCC
Q 008509 288 PAH 290 (563)
Q Consensus 288 P~~ 290 (563)
|..
T Consensus 172 pv~ 174 (254)
T cd00762 172 PVE 174 (254)
T ss_pred Ccc
Confidence 653
Done!