BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008510
(563 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3PSP|A Chain A, Crystal Structure Of Pul And Pfu Domain
Length = 425
Score = 125 bits (315), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 115/353 (32%), Positives = 165/353 (46%), Gaps = 58/353 (16%)
Query: 138 EALQIPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPI-LDGIQYD 196
E LQ PG GQ VV+ G + W K+G+VV G ++ I +G YD
Sbjct: 38 EILQSPGRKEGQIVVVK-SPQGTIEAHQFSNSSWKKVGDVVGAGATGNDKKIEFEGKTYD 96
Query: 197 YVFDVDIGDGEPTRKLPYNRSDNPYDAADKWLLKENLPFSYRQQIVEFILQNTGQKDFTL 256
YVFDVDI DG+P KLP N SDNPY AAD +L + LP SYR Q+V+FIL+NT
Sbjct: 97 YVFDVDIEDGKPPLKLPINVSDNPYTAADNFLARYELPMSYRDQVVQFILKNT------- 149
Query: 257 NTSFRDPYTGASAYVPGQPSSMSAI-PAKPT-FKHIPKKGMLIFDAAQFDGILKKIMEFN 314
G S P +S SA+ P+K + K +P K LI + D I I++ N
Sbjct: 150 --------NGISLDQPNDNASSSAVSPSKTSVMKVLPVKQYLIMENYNPDTIFNGIVKIN 201
Query: 315 -NALLFDLEKKNLSMSELETSRVAAVVKILKDTSHYHCSSFADVDISLLLKLLKTWPPAM 373
N FD E+ A+ I D S SFA+ + W +
Sbjct: 202 SNEKTFD--------DEILAQIGGALHDI--DESWELLLSFANT-------IRSNW--EI 242
Query: 374 IFPVIDILRMTILHPDGASLLLKHVENQNDVLMEMIEKVSSNPTLPANLLTGIRAVTNLF 433
P DI+R L++K + +D+ + IE+ N + +LT +R + N F
Sbjct: 243 KTPAYDIVR----------LIVKKLPYSSDI-KDYIEEGLGNKNITLTMLT-VRILVNCF 290
Query: 434 KNSSW-YSWLQKNRS-----EILDA-FSSCYSSSNKNVQLSYSTLILNYAVLL 479
N +W L+ N+ E +D FS + ++N+ ++ STLI NY+ L+
Sbjct: 291 NNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALV 343
>pdb|3PST|A Chain A, Crystal Structure Of Pul And Pfu(Mutate) Domain
Length = 425
Score = 124 bits (312), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 115/353 (32%), Positives = 165/353 (46%), Gaps = 58/353 (16%)
Query: 138 EALQIPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPI-LDGIQYD 196
E LQ PG GQ VV+ G + W K+G+VV G ++ I +G YD
Sbjct: 38 EILQSPGRKEGQIVVVK-SPQGTIEAHQFSNSSWKKVGDVVGAGATGNDKKIEFEGKTYD 96
Query: 197 YVFDVDIGDGEPTRKLPYNRSDNPYDAADKWLLKENLPFSYRQQIVEFILQNTGQKDFTL 256
YVFDVDI DG+P KLP N SDNPY AAD +L + LP SYR Q+V+ IL+NT
Sbjct: 97 YVFDVDIEDGKPPLKLPINVSDNPYTAADNFLARYELPMSYRDQVVQLILKNT------- 149
Query: 257 NTSFRDPYTGASAYVPGQPSSMSAI-PAKPT-FKHIPKKGMLIFDAAQFDGILKKIMEFN 314
G S P +S SA+ P+K + K +P K LI + D IL I++ N
Sbjct: 150 --------NGISLDQPNDNASSSAVSPSKTSVMKVLPVKQYLIMENYNPDTILNGIVKIN 201
Query: 315 -NALLFDLEKKNLSMSELETSRVAAVVKILKDTSHYHCSSFADVDISLLLKLLKTWPPAM 373
N FD E+ A+ I D S SFA+ + W +
Sbjct: 202 SNEKTFD--------DEILAQIGGALHDI--DESWELLLSFANT-------IRSNW--EI 242
Query: 374 IFPVIDILRMTILHPDGASLLLKHVENQNDVLMEMIEKVSSNPTLPANLLTGIRAVTNLF 433
P DI+R L++K + +D+ + IE+ N + +LT +R + N F
Sbjct: 243 KTPAYDIVR----------LIVKKLPYSSDI-KDYIEEGLGNKNITLTMLT-VRILVNCF 290
Query: 434 KNSSW-YSWLQKNRS-----EILDA-FSSCYSSSNKNVQLSYSTLILNYAVLL 479
N +W L+ N+ E +D FS + ++N+ ++ STLI NY+ L+
Sbjct: 291 NNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALV 343
>pdb|3L3F|X Chain X, Crystal Structure Of A Pfu-Pul Domain Pair Of
Saccharomyces Cerevisiae Doa1UFD3
Length = 362
Score = 111 bits (278), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 105/320 (32%), Positives = 152/320 (47%), Gaps = 57/320 (17%)
Query: 171 WDKLGEVVDGPDDGMNRPI-LDGIQYDYVFDVDIGDGEPTRKLPYNRSDNPYDAADKWLL 229
W K+G+VV G ++ I +G YDYVFDVDI DG+P KLP N SDNPY AAD +L
Sbjct: 7 WKKVGDVVGAGATGNDKKIEFEGKTYDYVFDVDIEDGKPPLKLPINVSDNPYTAADNFLA 66
Query: 230 KENLPFSYRQQIVEFILQNTGQKDFTLNTSFRDPYTGASAYVPGQPSSMSAI-PAKPTF- 287
+ LP SYR Q+V+FIL+NT G S P +S SA+ P+K +
Sbjct: 67 RYELPXSYRDQVVQFILKNTN---------------GISLDQPNDNASSSAVSPSKTSVX 111
Query: 288 KHIPKKGMLIFDAAQFDGILKKIMEFN-NALLFDLEKKNLSMSELETSRVAAVVKILKDT 346
K +P K LI + D I I++ N N FD E+ A+ I D
Sbjct: 112 KVLPVKQYLIXENYNPDTIFNGIVKINSNEKTFD--------DEILAQIGGALHDI--DE 161
Query: 347 SHYHCSSFADVDISLLLKLLKTWPPAMIFPVIDILRMTILHPDGASLLLKHVENQNDVLM 406
S SFA+ + W + P DI+R L++K + +D+
Sbjct: 162 SWELLLSFANT-------IRSNW--EIKTPAYDIVR----------LIVKKLPYSSDI-K 201
Query: 407 EMIEKVSSNPTLPANLLTGIRAVTNLFKNSSW-YSWLQKNRS-----EILDA-FSSCYSS 459
+ IE+ N + LT +R + N F N +W L+ N+ E +D FS +
Sbjct: 202 DYIEEGLGNKNITLTXLT-VRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAK 260
Query: 460 SNKNVQLSYSTLILNYAVLL 479
++N+ ++ STLI NY+ L+
Sbjct: 261 QSQNLAIAVSTLIFNYSALV 280
>pdb|3EBB|A Chain A, PlapP97 COMPLEX
pdb|3EBB|B Chain B, PlapP97 COMPLEX
pdb|3EBB|C Chain C, PlapP97 COMPLEX
pdb|3EBB|D Chain D, PlapP97 COMPLEX
Length = 304
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 75/295 (25%), Positives = 126/295 (42%), Gaps = 37/295 (12%)
Query: 262 DPYTGASAYVPGQPSSMSAIPAKPTFKHIPKKGMLIFDAAQFDGILKKIMEFNNALLFDL 321
DP+TG SAY + +K + PKK + FD A IL K+ E N
Sbjct: 24 DPFTGNSAY--------RSAASKTXNIYFPKKEAVTFDQANPTQILGKLKELNGT---AP 72
Query: 322 EKKNLSMSELETSRVAAVVKILKDTSHYHCSSFADVDISLLLKLL---KTWPPAMIFPVI 378
E+K L+ +L +L+ C+S ++ L++L P ++FP +
Sbjct: 73 EEKKLTEDDL---------ILLEKILSLICNSSSEKPTVQQLQILWKAINCPEDIVFPAL 123
Query: 379 DILRMTILHPDGASLLLKHVENQ--NDVLMEMIEKVSSNPT-LPANLLTGIRAVTNLFKN 435
DILR++I HP E + L+ ++ NP PAN L +R N F
Sbjct: 124 DILRLSIKHPSVNENFCNEKEGAQFSSHLINLL-----NPKGKPANQLLALRTFCNCFVG 178
Query: 436 SSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVXXXX 495
+ R + S SNKN+ ++ +TL LNY+V + + EG++
Sbjct: 179 QAGQKLXXSQRESLXSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQC-LSL 237
Query: 496 XXXXXXXXXXVDSKYRALVAIGTLMLE-----GLVKKIALDFDVGNIARVAKASK 545
+++ +R LVA+GTL+ + L K + +D + + V++ +K
Sbjct: 238 ISTILEVVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSSVSEPAK 292
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 54/98 (55%), Gaps = 4/98 (4%)
Query: 3 GVGIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIW-KD 60
G I SAS D T++LW GQ+L + GH++ V+ + G I S S+D+ K+W ++
Sbjct: 110 GQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN 169
Query: 61 GVCVQSIE-HPGCVWDAKFLENGDIVTACSDGVT-RIW 96
G +Q++ H VW F +G + + SD T ++W
Sbjct: 170 GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW 207
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 53/98 (54%), Gaps = 4/98 (4%)
Query: 3 GVGIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIW-KD 60
G I SAS D T++LW GQ+L + GH++ V + G I S S+D+ K+W ++
Sbjct: 479 GQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN 538
Query: 61 GVCVQSIE-HPGCVWDAKFLENGD-IVTACSDGVTRIW 96
G +Q++ H VW F +G I +A SD ++W
Sbjct: 539 GQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLW 576
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 54/98 (55%), Gaps = 4/98 (4%)
Query: 3 GVGIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIW-KD 60
G I SAS D T++LW GQ+L + GH++ V+ + G I S S+D+ K+W ++
Sbjct: 274 GQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN 333
Query: 61 GVCVQSIE-HPGCVWDAKFLENGDIVTACSDGVT-RIW 96
G +Q++ H VW F +G + + SD T ++W
Sbjct: 334 GQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW 371
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 4/98 (4%)
Query: 3 GVGIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIW-KD 60
G I SAS D T++LW GQ+L + GH++ V + G I S S+D+ K+W ++
Sbjct: 233 GQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRN 292
Query: 61 GVCVQSIE-HPGCVWDAKFLENGDIVTACSDGVT-RIW 96
G +Q++ H VW F +G + + SD T ++W
Sbjct: 293 GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW 330
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 4/98 (4%)
Query: 3 GVGIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIW-KD 60
G I SAS D T++LW GQ+L + GH++ V + G I S S+D+ K+W ++
Sbjct: 356 GQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN 415
Query: 61 GVCVQSIE-HPGCVWDAKFL-ENGDIVTACSDGVTRIW 96
G +Q++ H VW F ++ I +A D ++W
Sbjct: 416 GQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLW 453
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 53/98 (54%), Gaps = 4/98 (4%)
Query: 3 GVGIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIW-KD 60
G I SAS D T++LW GQ+L + GH++ V+ + G I S S+D+ K+W ++
Sbjct: 28 GQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN 87
Query: 61 GVCVQSIE-HPGCVWDAKFLENGDIVTACSDGVT-RIW 96
G +Q++ H V F +G + + SD T ++W
Sbjct: 88 GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW 125
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 4/98 (4%)
Query: 3 GVGIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIW-KD 60
G I SAS D T++LW GQ+L + GH++ V + G I S S+D+ K+W ++
Sbjct: 192 GQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN 251
Query: 61 GVCVQSIE-HPGCVWDAKFLENGDIVTACSDGVT-RIW 96
G +Q++ H V F +G + + SD T ++W
Sbjct: 252 GQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLW 289
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 51/95 (53%), Gaps = 4/95 (4%)
Query: 6 IISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIW-KDGVC 63
I SAS D T++LW GQ+L + GH++ V + G I S S+D+ K+W ++G
Sbjct: 441 IASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL 500
Query: 64 VQSIE-HPGCVWDAKFLENGDIVTACSDGVT-RIW 96
+Q++ H V F +G + + SD T ++W
Sbjct: 501 LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW 535
>pdb|2K89|A Chain A, Solution Structure Of A Novel Ubiquitin-Binding Domain
From Human Plaa (Pfuc, Gly76-Pro77 Cis Isomer)
pdb|2K8A|A Chain A, Solution Structure Of A Novel Ubiquitin-Binding Domain
From Human Plaa (Pfuc, Gly76-Pro77 Trans Isomer)
pdb|2K8B|B Chain B, Solution Structure Of Plaa Family Ubiquitin Binding Domain
(Pfuc) Cis Isomer In Complex With Ubiquitin
pdb|2K8C|B Chain B, Solution Structure Of Plaa Family Ubiquitin Binding Domain
(Pfuc) Trans Isomer In Complex With Ubiquitin
Length = 80
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 41/61 (67%)
Query: 189 ILDGIQYDYVFDVDIGDGEPTRKLPYNRSDNPYDAADKWLLKENLPFSYRQQIVEFILQN 248
+ +G ++DYVF +D+ +G P+ KLPYN SD+P+ A +L K +L + Q+ +FI+ N
Sbjct: 10 LYEGKEFDYVFSIDVNEGGPSYKLPYNTSDDPWLTAYNFLQKNDLNPMFLDQVAKFIIDN 69
Query: 249 T 249
T
Sbjct: 70 T 70
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 57/120 (47%), Gaps = 4/120 (3%)
Query: 3 GVGIISASHDCTIRLW-ALTGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIW--K 59
G I+S S D T+++W A+TG+ L +VGHT V+S +I+SGS DR K+W +
Sbjct: 129 GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWS-SQMRDNIIISGSTDRTLKVWNAE 187
Query: 60 DGVCVQSIEHPGCVWDAKFLENGDIVTACSDGVTRIWTVHSDKVADSLELEAYASELSQY 119
G C+ ++ L +V+ D R+W + + + L A QY
Sbjct: 188 TGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY 247
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 69/153 (45%), Gaps = 13/153 (8%)
Query: 30 GHTAIVYSIDSHASGLIVSGSEDRFAKIWK--DGVCVQS-IEHPGCVWDAKFLENGDIVT 86
GH V + IVSGS+D K+W G C+++ + H G VW ++ +N I++
Sbjct: 116 GHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN-IIIS 174
Query: 87 ACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLCRKKV------GGLKLEDLPGLEAL 140
+D ++W + + + L + S + L K+V L++ D+ + L
Sbjct: 175 GSTDRTLKVWNAETGECIHT--LYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCL 232
Query: 141 QIPGTNAGQTKVVR-EGDNGVAYSWDMKEQKWD 172
+ + + V+ +G V+ ++D + WD
Sbjct: 233 HVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWD 265
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 56/110 (50%), Gaps = 6/110 (5%)
Query: 3 GVGIISASHDCTIRLW-ALTGQVLMEMVGHTAIVYSIDSHASGL-IVSGSEDRFAKIW-- 58
G ++S ++D +++W T L + GHT VYS+ G+ +VSGS D ++W
Sbjct: 249 GRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSL--QFDGIHVVSGSLDTSIRVWDV 306
Query: 59 KDGVCVQSIEHPGCVWDAKFLENGDIVTACSDGVTRIWTVHSDKVADSLE 108
+ G C+ ++ + L++ +V+ +D +IW + + + +L+
Sbjct: 307 ETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQ 356
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 62/108 (57%), Gaps = 6/108 (5%)
Query: 6 IISASHDCTIRLWALT-GQVLMEMVGHTAIVYSIDSH-ASGLIVSGSEDRFAKIW--KDG 61
++SAS D T+++W ++ G+ L + GH+ V+ + + S LIVSGS D +IW K G
Sbjct: 83 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 142
Query: 62 VCVQSI-EHPGCVWDAKFLENGDIVTACS-DGVTRIWTVHSDKVADSL 107
+C++++ H V F +G ++ + S DG+ RIW S + +L
Sbjct: 143 MCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 190
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 55/107 (51%), Gaps = 12/107 (11%)
Query: 3 GVGIISASHDCTIRLW-ALTGQVLMEMVGH----TAIVYSIDSHASGLIVSGSEDRFAKI 57
G + S+S D I++W A G+ + GH + + +S DS+ L+VS S+D+ KI
Sbjct: 38 GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN---LLVSASDDKTLKI 94
Query: 58 W--KDGVCVQSIE-HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHS 100
W G C+++++ H V+ F + IV+ D RIW V +
Sbjct: 95 WDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 141
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 3 GVGIISASHDCTIRLWALT-GQVLMEMVGHTAIVYSIDSHAS----GLIVSGSEDRFAKI 57
G I++A+ D T++LW + G+ L GH Y I ++ S IVSGSED I
Sbjct: 207 GKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYI 266
Query: 58 W 58
W
Sbjct: 267 W 267
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 62/108 (57%), Gaps = 6/108 (5%)
Query: 6 IISASHDCTIRLWALT-GQVLMEMVGHTAIVYSIDSH-ASGLIVSGSEDRFAKIW--KDG 61
++SAS D T+++W ++ G+ L + GH+ V+ + + S LIVSGS D +IW K G
Sbjct: 83 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 142
Query: 62 VCVQSI-EHPGCVWDAKFLENGDIVTACS-DGVTRIWTVHSDKVADSL 107
+C++++ H V F +G ++ + S DG+ RIW S + +L
Sbjct: 143 MCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 190
Score = 36.6 bits (83), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 55/107 (51%), Gaps = 12/107 (11%)
Query: 3 GVGIISASHDCTIRLW-ALTGQVLMEMVGH----TAIVYSIDSHASGLIVSGSEDRFAKI 57
G + S+S D I++W A G+ + GH + + +S DS+ L+VS S+D+ KI
Sbjct: 38 GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN---LLVSASDDKTLKI 94
Query: 58 W--KDGVCVQSIE-HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHS 100
W G C+++++ H V+ F + IV+ D RIW V +
Sbjct: 95 WDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 141
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Query: 3 GVGIISASHDCTIRLWALT-GQVLMEMVGHTAIVYSIDSHAS----GLIVSGSEDRFAKI 57
G I++A+ D ++LW + G+ L GH Y I ++ S IVSGSED I
Sbjct: 207 GKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYI 266
Query: 58 W 58
W
Sbjct: 267 W 267
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 54/110 (49%), Gaps = 4/110 (3%)
Query: 6 IISASHDCTIRLW-ALTGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIW--KDGV 62
IS S+D I+L TG VL GH + VY I +G IVS EDR +IW ++G
Sbjct: 198 FISCSNDGLIKLVDXHTGDVLRTYEGHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENGS 257
Query: 63 CVQSIEHPG-CVWDAKFLENGDIVTACSDGVTRIWTVHSDKVADSLELEA 111
Q I P +W NGDI+ SD + RI++ + A E++
Sbjct: 258 LKQVITLPAISIWSVDCXSNGDIIVGSSDNLVRIFSQEKSRWASEDEIKG 307
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 57/94 (60%), Gaps = 9/94 (9%)
Query: 15 IRLWALTGQ-VLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWKDGVCVQSIE-HPGC 72
+ L+A +G+ L ++GH V S+ S G+++SGS D+ AK+WK+G V +++ H
Sbjct: 86 VPLFATSGEDPLYTLIGHQGNVCSL-SFQDGVVISGSWDKTAKVWKEGSLVYNLQAHNAS 144
Query: 73 VWDAK---FLENGDIVTACSDGVTRIWTVHSDKV 103
VWDAK F EN +TA +D ++W +DKV
Sbjct: 145 VWDAKVVSFSEN-KFLTASADKTIKLW--QNDKV 175
Score = 35.8 bits (81), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 1 MPGVGIISASHDCTIRLWALTGQVLMEMVGHTAI-VYSIDSHASGLIVSGSEDRFAKI 57
+P I+S D T+R+W+ L +++ AI ++S+D ++G I+ GS D +I
Sbjct: 234 LPNGDIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCXSNGDIIVGSSDNLVRI 291
Score = 35.8 bits (81), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 51/110 (46%), Gaps = 5/110 (4%)
Query: 6 IISASHDCTIRLWALTGQVLMEMVG-HTAIVYSIDSHASGLIVSGSEDRFAKI--WKDGV 62
++AS D TI+LW +V+ G H +V + G +S S D K+ G
Sbjct: 158 FLTASADKTIKLWQ-NDKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDXHTGD 216
Query: 63 CVQSIE-HPGCVWDAKFLENGDIVTACSDGVTRIWTVHSDKVADSLELEA 111
+++ E H V+ K L NGDIV+ D RIW+ + + + L A
Sbjct: 217 VLRTYEGHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENGSLKQVITLPA 266
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 61/108 (56%), Gaps = 6/108 (5%)
Query: 6 IISASHDCTIRLWALT-GQVLMEMVGHTAIVYSIDSHA-SGLIVSGSEDRFAKIW--KDG 61
++SAS D T+++W ++ G+ L + GH+ V+ + + S LIVSGS D +IW K G
Sbjct: 102 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 161
Query: 62 VCVQSI-EHPGCVWDAKFLENGDIVTACS-DGVTRIWTVHSDKVADSL 107
C++++ H V F +G ++ + S DG+ RIW S + +L
Sbjct: 162 KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 209
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 12/114 (10%)
Query: 3 GVGIISASHDCTIRLW-ALTGQVLMEMVGH----TAIVYSIDSHASGLIVSGSEDRFAKI 57
G + S+S D I++W A G+ + GH + + +S DS+ L+VS S+D+ KI
Sbjct: 57 GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN---LLVSASDDKTLKI 113
Query: 58 W--KDGVCVQSIE-HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSL 107
W G C+++++ H V+ F + IV+ D RIW V + K +L
Sbjct: 114 WDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 167
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 3 GVGIISASHDCTIRLWALT-GQVLMEMVGHTAIVYSIDSHAS----GLIVSGSEDRFAKI 57
G I++A+ D T++LW + G+ L GH Y I ++ S IVSGSED I
Sbjct: 226 GKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYI 285
Query: 58 W 58
W
Sbjct: 286 W 286
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 61/108 (56%), Gaps = 6/108 (5%)
Query: 6 IISASHDCTIRLWALT-GQVLMEMVGHTAIVYSID-SHASGLIVSGSEDRFAKIW--KDG 61
++SAS D T+++W ++ G+ L + GH+ V+ + + S LIVSGS D +IW K G
Sbjct: 104 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 163
Query: 62 VCVQSI-EHPGCVWDAKFLENGDIVTACS-DGVTRIWTVHSDKVADSL 107
C++++ H V F +G ++ + S DG+ RIW S + +L
Sbjct: 164 KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 211
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 12/114 (10%)
Query: 3 GVGIISASHDCTIRLW-ALTGQVLMEMVGH----TAIVYSIDSHASGLIVSGSEDRFAKI 57
G + S+S D I++W A G+ + GH + + +S DS+ L+VS S+D+ KI
Sbjct: 59 GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN---LLVSASDDKTLKI 115
Query: 58 W--KDGVCVQSIE-HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSL 107
W G C+++++ H V+ F + IV+ D RIW V + K +L
Sbjct: 116 WDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 169
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 3 GVGIISASHDCTIRLWALT-GQVLMEMVGHTAIVYSIDSHAS----GLIVSGSEDRFAKI 57
G I++A+ D T++LW + G+ L GH Y I ++ S IVSGSED I
Sbjct: 228 GKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYI 287
Query: 58 W 58
W
Sbjct: 288 W 288
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 61/108 (56%), Gaps = 6/108 (5%)
Query: 6 IISASHDCTIRLWALT-GQVLMEMVGHTAIVYSIDSHA-SGLIVSGSEDRFAKIW--KDG 61
++SAS D T+++W ++ G+ L + GH+ V+ + + S LIVSGS D +IW K G
Sbjct: 86 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 145
Query: 62 VCVQSI-EHPGCVWDAKFLENGDIVTACS-DGVTRIWTVHSDKVADSL 107
C++++ H V F +G ++ + S DG+ RIW S + +L
Sbjct: 146 KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 193
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 12/114 (10%)
Query: 3 GVGIISASHDCTIRLW-ALTGQVLMEMVGH----TAIVYSIDSHASGLIVSGSEDRFAKI 57
G + S+S D I++W A G+ + GH + + +S DS+ L+VS S+D+ KI
Sbjct: 41 GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN---LLVSASDDKTLKI 97
Query: 58 W--KDGVCVQSIE-HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSL 107
W G C+++++ H V+ F + IV+ D RIW V + K +L
Sbjct: 98 WDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 151
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 3 GVGIISASHDCTIRLWALT-GQVLMEMVGHTAIVYSIDSHAS----GLIVSGSEDRFAKI 57
G I++A+ D T++LW + G+ L GH Y I ++ S IVSGSED I
Sbjct: 210 GKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYI 269
Query: 58 W 58
W
Sbjct: 270 W 270
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 61/108 (56%), Gaps = 6/108 (5%)
Query: 6 IISASHDCTIRLWALT-GQVLMEMVGHTAIVYSIDSH-ASGLIVSGSEDRFAKIW--KDG 61
++SAS D T+++W ++ G+ L + GH+ V+ + + S LIVSGS D +IW K G
Sbjct: 97 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 156
Query: 62 VCVQSI-EHPGCVWDAKFLENGDIVTACS-DGVTRIWTVHSDKVADSL 107
C++++ H V F +G ++ + S DG+ RIW S + +L
Sbjct: 157 KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 204
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 12/114 (10%)
Query: 3 GVGIISASHDCTIRLW-ALTGQVLMEMVGH----TAIVYSIDSHASGLIVSGSEDRFAKI 57
G + S+S D I++W A G+ + GH + + +S DS+ L+VS S+D+ KI
Sbjct: 52 GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN---LLVSASDDKTLKI 108
Query: 58 W--KDGVCVQSIE-HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSL 107
W G C+++++ H V+ F + IV+ D RIW V + K +L
Sbjct: 109 WDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 162
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 3 GVGIISASHDCTIRLWALT-GQVLMEMVGHTAIVYSIDSHAS----GLIVSGSEDRFAKI 57
G I++A+ D T++LW + G+ L GH Y I ++ S IVSGSED I
Sbjct: 221 GKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYI 280
Query: 58 W 58
W
Sbjct: 281 W 281
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 61/108 (56%), Gaps = 6/108 (5%)
Query: 6 IISASHDCTIRLWALT-GQVLMEMVGHTAIVYSIDSHA-SGLIVSGSEDRFAKIW--KDG 61
++SAS D T+++W ++ G+ L + GH+ V+ + + S LIVSGS D +IW K G
Sbjct: 86 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 145
Query: 62 VCVQSI-EHPGCVWDAKFLENGDIVTACS-DGVTRIWTVHSDKVADSL 107
C++++ H V F +G ++ + S DG+ RIW S + +L
Sbjct: 146 KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 193
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 12/114 (10%)
Query: 3 GVGIISASHDCTIRLW-ALTGQVLMEMVGH----TAIVYSIDSHASGLIVSGSEDRFAKI 57
G + S+S D I++W A G+ + GH + + +S DS+ L+VS S+D+ KI
Sbjct: 41 GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN---LLVSASDDKTLKI 97
Query: 58 W--KDGVCVQSIE-HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSL 107
W G C+++++ H V+ F + IV+ D RIW V + K +L
Sbjct: 98 WDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 151
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 3 GVGIISASHDCTIRLWALT-GQVLMEMVGHTAIVYSIDSHAS----GLIVSGSEDRFAKI 57
G I++A+ D T++LW + G+ L GH Y I ++ S IVSGSED I
Sbjct: 210 GKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYI 269
Query: 58 W 58
W
Sbjct: 270 W 270
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 61/108 (56%), Gaps = 6/108 (5%)
Query: 6 IISASHDCTIRLWALT-GQVLMEMVGHTAIVYSIDSH-ASGLIVSGSEDRFAKIW--KDG 61
++SAS D T+++W ++ G+ L + GH+ V+ + + S LIVSGS D +IW K G
Sbjct: 83 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 142
Query: 62 VCVQSI-EHPGCVWDAKFLENGDIVTACS-DGVTRIWTVHSDKVADSL 107
C++++ H V F +G ++ + S DG+ RIW S + +L
Sbjct: 143 KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 190
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 12/114 (10%)
Query: 3 GVGIISASHDCTIRLW-ALTGQVLMEMVGH----TAIVYSIDSHASGLIVSGSEDRFAKI 57
G + S+S D I++W A G+ + GH + + +S DS+ L+VS S+D+ KI
Sbjct: 38 GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN---LLVSASDDKTLKI 94
Query: 58 W--KDGVCVQSIE-HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSL 107
W G C+++++ H V+ F + IV+ D RIW V + K +L
Sbjct: 95 WDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 148
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 3 GVGIISASHDCTIRLWALT-GQVLMEMVGHTAIVYSIDSHAS----GLIVSGSEDRFAKI 57
G I++A+ D T++LW + G+ L GH Y I ++ S IVSGSED I
Sbjct: 207 GKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYI 266
Query: 58 W 58
W
Sbjct: 267 W 267
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 61/108 (56%), Gaps = 6/108 (5%)
Query: 6 IISASHDCTIRLWALT-GQVLMEMVGHTAIVYSIDSH-ASGLIVSGSEDRFAKIW--KDG 61
++SAS D T+++W ++ G+ L + GH+ V+ + + S LIVSGS D +IW K G
Sbjct: 83 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 142
Query: 62 VCVQSI-EHPGCVWDAKFLENGDIVTACS-DGVTRIWTVHSDKVADSL 107
C++++ H V F +G ++ + S DG+ RIW S + +L
Sbjct: 143 KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 190
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 12/114 (10%)
Query: 3 GVGIISASHDCTIRLW-ALTGQVLMEMVGH----TAIVYSIDSHASGLIVSGSEDRFAKI 57
G + S+S D I++W A G+ + GH + + +S DS+ L+VS S+D+ KI
Sbjct: 38 GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN---LLVSASDDKTLKI 94
Query: 58 W--KDGVCVQSIE-HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSL 107
W G C+++++ H V+ F + IV+ D RIW V + K +L
Sbjct: 95 WDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 148
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 3 GVGIISASHDCTIRLWALT-GQVLMEMVGHTAIVYSIDSHAS----GLIVSGSEDRFAKI 57
G I++A+ D T++LW + G+ L GH Y I ++ S IVSGSED I
Sbjct: 207 GKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYI 266
Query: 58 W 58
W
Sbjct: 267 W 267
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 61/108 (56%), Gaps = 6/108 (5%)
Query: 6 IISASHDCTIRLWALT-GQVLMEMVGHTAIVYSIDSH-ASGLIVSGSEDRFAKIW--KDG 61
++SAS D T+++W ++ G+ L + GH+ V+ + + S LIVSGS D +IW K G
Sbjct: 80 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 139
Query: 62 VCVQSI-EHPGCVWDAKFLENGDIVTACS-DGVTRIWTVHSDKVADSL 107
C++++ H V F +G ++ + S DG+ RIW S + +L
Sbjct: 140 KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 187
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 12/114 (10%)
Query: 3 GVGIISASHDCTIRLW-ALTGQVLMEMVGH----TAIVYSIDSHASGLIVSGSEDRFAKI 57
G + S+S D I++W A G+ + GH + + +S DS+ L+VS S+D+ KI
Sbjct: 35 GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN---LLVSASDDKTLKI 91
Query: 58 W--KDGVCVQSIE-HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSL 107
W G C+++++ H V+ F + IV+ D RIW V + K +L
Sbjct: 92 WDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 145
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 3 GVGIISASHDCTIRLWALT-GQVLMEMVGHTAIVYSIDSHAS----GLIVSGSEDRFAKI 57
G I++A+ D T++LW + G+ L GH Y I ++ S IVSGSED I
Sbjct: 204 GKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYI 263
Query: 58 W 58
W
Sbjct: 264 W 264
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 61/108 (56%), Gaps = 6/108 (5%)
Query: 6 IISASHDCTIRLWALT-GQVLMEMVGHTAIVYSIDSH-ASGLIVSGSEDRFAKIW--KDG 61
++SAS D T+++W ++ G+ L + GH+ V+ + + S LIVSGS D +IW K G
Sbjct: 81 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 140
Query: 62 VCVQSI-EHPGCVWDAKFLENGDIVTACS-DGVTRIWTVHSDKVADSL 107
C++++ H V F +G ++ + S DG+ RIW S + +L
Sbjct: 141 KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 188
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 12/114 (10%)
Query: 3 GVGIISASHDCTIRLW-ALTGQVLMEMVGH----TAIVYSIDSHASGLIVSGSEDRFAKI 57
G + S+S D I++W A G+ + GH + + +S DS+ L+VS S+D+ KI
Sbjct: 36 GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN---LLVSASDDKTLKI 92
Query: 58 W--KDGVCVQSIE-HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSL 107
W G C+++++ H V+ F + IV+ D RIW V + K +L
Sbjct: 93 WDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 146
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 3 GVGIISASHDCTIRLWALT-GQVLMEMVGHTAIVYSIDSHAS----GLIVSGSEDRFAKI 57
G I++A+ D T++LW + G+ L GH Y I ++ S IVSGSED I
Sbjct: 205 GKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYI 264
Query: 58 W 58
W
Sbjct: 265 W 265
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 61/108 (56%), Gaps = 6/108 (5%)
Query: 6 IISASHDCTIRLWALT-GQVLMEMVGHTAIVYSIDSH-ASGLIVSGSEDRFAKIW--KDG 61
++SAS D T+++W ++ G+ L + GH+ V+ + + S LIVSGS D +IW K G
Sbjct: 80 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 139
Query: 62 VCVQSI-EHPGCVWDAKFLENGDIVTACS-DGVTRIWTVHSDKVADSL 107
C++++ H V F +G ++ + S DG+ RIW S + +L
Sbjct: 140 KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 187
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 12/114 (10%)
Query: 3 GVGIISASHDCTIRLW-ALTGQVLMEMVGH----TAIVYSIDSHASGLIVSGSEDRFAKI 57
G + S+S D I++W A G+ + GH + + +S DS+ L+VS S+D+ KI
Sbjct: 35 GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN---LLVSASDDKTLKI 91
Query: 58 W--KDGVCVQSIE-HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSL 107
W G C+++++ H V+ F + IV+ D RIW V + K +L
Sbjct: 92 WDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 145
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 3 GVGIISASHDCTIRLWALT-GQVLMEMVGHTAIVYSIDSHAS----GLIVSGSEDRFAKI 57
G I++A+ D T++LW + G+ L GH Y I ++ S IVSGSED I
Sbjct: 204 GKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYI 263
Query: 58 W 58
W
Sbjct: 264 W 264
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 61/108 (56%), Gaps = 6/108 (5%)
Query: 6 IISASHDCTIRLWALT-GQVLMEMVGHTAIVYSIDSH-ASGLIVSGSEDRFAKIW--KDG 61
++SAS D T+++W ++ G+ L + GH+ V+ + + S LIVSGS D +IW K G
Sbjct: 86 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 145
Query: 62 VCVQSI-EHPGCVWDAKFLENGDIVTACS-DGVTRIWTVHSDKVADSL 107
C++++ H V F +G ++ + S DG+ RIW S + +L
Sbjct: 146 KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 193
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 12/114 (10%)
Query: 3 GVGIISASHDCTIRLW-ALTGQVLMEMVGH----TAIVYSIDSHASGLIVSGSEDRFAKI 57
G + S+S D I++W A G+ + GH + + +S DS+ L+VS S+D+ KI
Sbjct: 41 GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN---LLVSASDDKTLKI 97
Query: 58 W--KDGVCVQSIE-HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSL 107
W G C+++++ H V+ F + IV+ D RIW V + K +L
Sbjct: 98 WDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 151
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 3 GVGIISASHDCTIRLWALT-GQVLMEMVGHTAIVYSIDSHAS----GLIVSGSEDRFAKI 57
G I++A+ D T++LW + G+ L GH Y I ++ S IVSGSED I
Sbjct: 210 GKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYI 269
Query: 58 W 58
W
Sbjct: 270 W 270
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 61/108 (56%), Gaps = 6/108 (5%)
Query: 6 IISASHDCTIRLWALT-GQVLMEMVGHTAIVYSIDSH-ASGLIVSGSEDRFAKIW--KDG 61
++SAS D T+++W ++ G+ L + GH+ V+ + + S LIVSGS D +IW K G
Sbjct: 85 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 144
Query: 62 VCVQSI-EHPGCVWDAKFLENGDIVTACS-DGVTRIWTVHSDKVADSL 107
C++++ H V F +G ++ + S DG+ RIW S + +L
Sbjct: 145 KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 192
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 12/114 (10%)
Query: 3 GVGIISASHDCTIRLW-ALTGQVLMEMVGH----TAIVYSIDSHASGLIVSGSEDRFAKI 57
G + S+S D I++W A G+ + GH + + +S DS+ L+VS S+D+ KI
Sbjct: 40 GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN---LLVSASDDKTLKI 96
Query: 58 W--KDGVCVQSIE-HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSL 107
W G C+++++ H V+ F + IV+ D RIW V + K +L
Sbjct: 97 WDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 150
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 3 GVGIISASHDCTIRLWALT-GQVLMEMVGHTAIVYSIDSHAS----GLIVSGSEDRFAKI 57
G I++A+ D T++LW + G+ L GH Y I ++ S IVSGSED I
Sbjct: 209 GKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYI 268
Query: 58 W 58
W
Sbjct: 269 W 269
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 61/108 (56%), Gaps = 6/108 (5%)
Query: 6 IISASHDCTIRLWALT-GQVLMEMVGHTAIVYSIDSH-ASGLIVSGSEDRFAKIW--KDG 61
++SAS D T+++W ++ G+ L + GH+ V+ + + S LIVSGS D +IW K G
Sbjct: 76 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 135
Query: 62 VCVQSI-EHPGCVWDAKFLENGDIVTACS-DGVTRIWTVHSDKVADSL 107
C++++ H V F +G ++ + S DG+ RIW S + +L
Sbjct: 136 KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 183
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 12/114 (10%)
Query: 3 GVGIISASHDCTIRLW-ALTGQVLMEMVGH----TAIVYSIDSHASGLIVSGSEDRFAKI 57
G + S+S D I++W A G+ + GH + + +S DS+ L+VS S+D+ KI
Sbjct: 31 GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN---LLVSASDDKTLKI 87
Query: 58 W--KDGVCVQSIE-HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSL 107
W G C+++++ H V+ F + IV+ D RIW V + K +L
Sbjct: 88 WDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 141
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 3 GVGIISASHDCTIRLWALT-GQVLMEMVGHTAIVYSIDSHAS----GLIVSGSEDRFAKI 57
G I++A+ D T++LW + G+ L GH Y I ++ S IVSGSED I
Sbjct: 200 GKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYI 259
Query: 58 W 58
W
Sbjct: 260 W 260
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 61/108 (56%), Gaps = 6/108 (5%)
Query: 6 IISASHDCTIRLWALT-GQVLMEMVGHTAIVYSIDSH-ASGLIVSGSEDRFAKIW--KDG 61
++SAS D T+++W ++ G+ L + GH+ V+ + + S LIVSGS D +IW K G
Sbjct: 83 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 142
Query: 62 VCVQSI-EHPGCVWDAKFLENGDIVTACS-DGVTRIWTVHSDKVADSL 107
C++++ H V F +G ++ + S DG+ RIW S + +L
Sbjct: 143 KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 190
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 12/114 (10%)
Query: 3 GVGIISASHDCTIRLW-ALTGQVLMEMVGH----TAIVYSIDSHASGLIVSGSEDRFAKI 57
G + ++S D I++W A G+ + GH + + +S DS+ L+VS S+D+ KI
Sbjct: 38 GEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN---LLVSASDDKTLKI 94
Query: 58 W--KDGVCVQSIE-HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSL 107
W G C+++++ H V+ F + IV+ D RIW V + K +L
Sbjct: 95 WDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 148
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 3 GVGIISASHDCTIRLWALT-GQVLMEMVGHTAIVYSIDSHAS----GLIVSGSEDRFAKI 57
G I++A+ D T++LW + G+ L GH Y I ++ S IVSGSED I
Sbjct: 207 GKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYI 266
Query: 58 W 58
W
Sbjct: 267 W 267
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 61/108 (56%), Gaps = 6/108 (5%)
Query: 6 IISASHDCTIRLWALT-GQVLMEMVGHTAIVYSIDSH-ASGLIVSGSEDRFAKIW--KDG 61
++SAS D T+++W ++ G+ L + GH+ V+ + + S LIVSGS D +IW K G
Sbjct: 79 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 138
Query: 62 VCVQSI-EHPGCVWDAKFLENGDIVTACS-DGVTRIWTVHSDKVADSL 107
C++++ H V F +G ++ + S DG+ RIW S + +L
Sbjct: 139 KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 186
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 12/114 (10%)
Query: 3 GVGIISASHDCTIRLW-ALTGQVLMEMVGH----TAIVYSIDSHASGLIVSGSEDRFAKI 57
G + S+S D I++W A G+ + GH + + +S DS+ L+VS S+D+ KI
Sbjct: 34 GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN---LLVSASDDKTLKI 90
Query: 58 W--KDGVCVQSIE-HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSL 107
W G C+++++ H V+ F + IV+ D RIW V + K +L
Sbjct: 91 WDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 144
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 3 GVGIISASHDCTIRLWALT-GQVLMEMVGHTAIVYSIDSHAS----GLIVSGSEDRFAKI 57
G I++A+ D T++LW + G+ L GH Y I ++ S IVSGSED I
Sbjct: 203 GKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYI 262
Query: 58 W 58
W
Sbjct: 263 W 263
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 54/101 (53%), Gaps = 6/101 (5%)
Query: 2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIW- 58
PG ++S S D TI++W + TG LM +VGH V + H+ G I+S ++D+ ++W
Sbjct: 307 PGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWD 366
Query: 59 -KDGVCVQSIE-HPGCVWDAKFLENGD-IVTACSDGVTRIW 96
K+ C++++ H V F + +VT D ++W
Sbjct: 367 YKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 407
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 51/101 (50%), Gaps = 6/101 (5%)
Query: 6 IISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSID-SHASGLIVSGSEDRFAKIW--KDG 61
++SAS D TI++W TG + GHT V I H+ L+ S S D K+W +
Sbjct: 123 MVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGF 182
Query: 62 VCVQSIE-HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHS 100
C++++ H V + NGD IV+A D ++W V +
Sbjct: 183 ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQT 223
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 64/145 (44%), Gaps = 27/145 (18%)
Query: 3 GVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIV----------YSIDSHASG------- 44
G I S S+D T+R+W + T + E+ H +V YS S A+G
Sbjct: 246 GTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSG 305
Query: 45 ----LIVSGSEDRFAKIW--KDGVCVQS-IEHPGCVWDAKFLENGDIVTACSDGVT-RIW 96
++SGS D+ K+W G+C+ + + H V F G + +C+D T R+W
Sbjct: 306 KPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVW 365
Query: 97 TVHSDKVADSLEL-EAYASELSQYK 120
+ + +L E + + L +K
Sbjct: 366 DYKNKRCMKTLNAHEHFVTSLDFHK 390
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 1 MP-GVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKI 57
MP G I+SAS D TI++W + TG + GH V + + G LI S S D+ ++
Sbjct: 201 MPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRV 260
Query: 58 W 58
W
Sbjct: 261 W 261
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 3 GVGIISASHDCTIRLWALTGQVLMEMV-GHTAIVYSIDSHASG-LIVSGSEDRFAKIWK 59
G I+S + D T+R+W + M+ + H V S+D H + +V+GS D+ K+W+
Sbjct: 350 GKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 56/108 (51%), Gaps = 11/108 (10%)
Query: 3 GVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSID-SHASGLIVSGSEDRFAKIWK- 59
G +SAS D T+RLW + TG+ VGH + V S+D + +I+SGS D+ K+W
Sbjct: 77 GAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI 136
Query: 60 DGVCVQS-IEHPGCVWDAKFLENGD-------IVTACSDGVTRIWTVH 99
G C+ + + H V + + N I++A +D + + W ++
Sbjct: 137 KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 184
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 61/144 (42%), Gaps = 15/144 (10%)
Query: 6 IISASHDCTIRLWALTGQVLMEMVGHTAIVYSID-------SHASGLIVSGSEDRFAKIW 58
IIS S D TI++W + GQ L ++GH V + S I+S D+ K W
Sbjct: 122 IISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAW 181
Query: 59 ---KDGVCVQSIEHPGCVWDAKFLENGDIV-TACSDGVTRIWTVHSDKVADSL----ELE 110
+ + I H + +G ++ +A DG +W + + K +L E+
Sbjct: 182 NLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVF 241
Query: 111 AYASELSQYKLCRKKVGGLKLEDL 134
+ A ++Y L G+K+ L
Sbjct: 242 SLAFSPNRYWLAAATATGIKVFSL 265
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 56/108 (51%), Gaps = 11/108 (10%)
Query: 3 GVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSID-SHASGLIVSGSEDRFAKIWK- 59
G +SAS D T+RLW + TG+ VGH + V S+D + +I+SGS D+ K+W
Sbjct: 77 GAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI 136
Query: 60 DGVCVQS-IEHPGCVWDAKFLENGD-------IVTACSDGVTRIWTVH 99
G C+ + + H V + + N I++A +D + + W ++
Sbjct: 137 KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 184
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 61/144 (42%), Gaps = 15/144 (10%)
Query: 6 IISASHDCTIRLWALTGQVLMEMVGHTAIVYSID-------SHASGLIVSGSEDRFAKIW 58
IIS S D TI++W + GQ L ++GH V + S I+S D+ K W
Sbjct: 122 IISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAW 181
Query: 59 ---KDGVCVQSIEHPGCVWDAKFLENGDIV-TACSDGVTRIWTVHSDKVADSL----ELE 110
+ + I H + +G ++ +A DG +W + + K +L E+
Sbjct: 182 NLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVF 241
Query: 111 AYASELSQYKLCRKKVGGLKLEDL 134
+ A ++Y L G+K+ L
Sbjct: 242 SLAFSPNRYWLAAATATGIKVFSL 265
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 56/108 (51%), Gaps = 11/108 (10%)
Query: 3 GVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSID-SHASGLIVSGSEDRFAKIWK- 59
G +SAS D T+RLW + TG+ VGH + V S+D + +I+SGS D+ K+W
Sbjct: 71 GAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI 130
Query: 60 DGVCVQS-IEHPGCVWDAKFLENGD-------IVTACSDGVTRIWTVH 99
G C+ + + H V + + N I++A +D + + W ++
Sbjct: 131 KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 178
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 61/144 (42%), Gaps = 15/144 (10%)
Query: 6 IISASHDCTIRLWALTGQVLMEMVGHTAIVYSID-------SHASGLIVSGSEDRFAKIW 58
IIS S D TI++W + GQ L ++GH V + S I+S D+ K W
Sbjct: 116 IISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAW 175
Query: 59 ---KDGVCVQSIEHPGCVWDAKFLENGDIV-TACSDGVTRIWTVHSDKVADSL----ELE 110
+ + I H + +G ++ +A DG +W + + K +L E+
Sbjct: 176 NLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVF 235
Query: 111 AYASELSQYKLCRKKVGGLKLEDL 134
+ A ++Y L G+K+ L
Sbjct: 236 SLAFSPNRYWLAAATATGIKVFSL 259
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 56/108 (51%), Gaps = 11/108 (10%)
Query: 3 GVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSID-SHASGLIVSGSEDRFAKIWK- 59
G +SAS D T+RLW + TG+ VGH + V S+D + +I+SGS D+ K+W
Sbjct: 77 GAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI 136
Query: 60 DGVCVQS-IEHPGCVWDAKFLENGD-------IVTACSDGVTRIWTVH 99
G C+ + + H V + + N I++A +D + + W ++
Sbjct: 137 KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 184
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 61/144 (42%), Gaps = 15/144 (10%)
Query: 6 IISASHDCTIRLWALTGQVLMEMVGHTAIVYSID-------SHASGLIVSGSEDRFAKIW 58
IIS S D TI++W + GQ L ++GH V + S I+S D+ K W
Sbjct: 122 IISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAW 181
Query: 59 ---KDGVCVQSIEHPGCVWDAKFLENGDIV-TACSDGVTRIWTVHSDKVADSL----ELE 110
+ + I H + +G ++ +A DG +W + + K +L E+
Sbjct: 182 NLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVF 241
Query: 111 AYASELSQYKLCRKKVGGLKLEDL 134
+ A ++Y L G+K+ L
Sbjct: 242 SLAFSPNRYWLAAATATGIKVFSL 265
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 56/108 (51%), Gaps = 11/108 (10%)
Query: 3 GVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSID-SHASGLIVSGSEDRFAKIWK- 59
G +SAS D T+RLW + TG+ VGH + V S+D + +I+SGS D+ K+W
Sbjct: 77 GAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI 136
Query: 60 DGVCVQS-IEHPGCVWDAKFLENGD-------IVTACSDGVTRIWTVH 99
G C+ + + H V + + N I++A +D + + W ++
Sbjct: 137 KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 184
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 61/144 (42%), Gaps = 15/144 (10%)
Query: 6 IISASHDCTIRLWALTGQVLMEMVGHTAIVYSID-------SHASGLIVSGSEDRFAKIW 58
IIS S D TI++W + GQ L ++GH V + S I+S D+ K W
Sbjct: 122 IISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAW 181
Query: 59 ---KDGVCVQSIEHPGCVWDAKFLENGDIV-TACSDGVTRIWTVHSDKVADSL----ELE 110
+ + I H + +G ++ +A DG +W + + K +L E+
Sbjct: 182 NLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVF 241
Query: 111 AYASELSQYKLCRKKVGGLKLEDL 134
+ A ++Y L G+K+ L
Sbjct: 242 SLAFSPNRYWLAAATATGIKVFSL 265
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 7/98 (7%)
Query: 6 IISASHDCTIRLW-ALTGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIW--KDGV 62
+I+ + D IR++ ++ + L+++ GH V+++ G++VSGS DR ++W K G
Sbjct: 135 VITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGC 194
Query: 63 CVQSIE-HPGCVWDAKFLENGD---IVTACSDGVTRIW 96
C E H V +E + IVT D +W
Sbjct: 195 CTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW 232
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/74 (21%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Query: 28 MVGHTAIVYSIDSHASGLIVSGSEDRFAKIW---KDGVCVQSIEHPGCVWDAKFLENGDI 84
+ GH V + +++G++D+ +++ +Q H G VW K+ G +
Sbjct: 117 LRGHXTSVITCLQFEDNYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAHGGIL 176
Query: 85 VTACSDGVTRIWTV 98
V+ +D R+W +
Sbjct: 177 VSGSTDRTVRVWDI 190
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 4/103 (3%)
Query: 7 ISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIW--KDGVC 63
ISAS D TIR+W L G++ + GHTA+V + + +VS + D + W D
Sbjct: 326 ISASXDTTIRIWDLENGELXYTLQGHTALV-GLLRLSDKFLVSAAADGSIRGWDANDYSR 384
Query: 64 VQSIEHPGCVWDAKFLENGDIVTACSDGVTRIWTVHSDKVADS 106
S H F + +I+ + S+ I+ + S K+ +
Sbjct: 385 KFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHA 427
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 7/98 (7%)
Query: 6 IISASHDCTIRLW-ALTGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIW--KDGV 62
+I+ + D IR++ ++ + L+++ GH V+++ G++VSGS DR ++W K G
Sbjct: 135 VITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGC 194
Query: 63 CVQSIE-HPGCVWDAKFLENGD---IVTACSDGVTRIW 96
C E H V +E + IVT D +W
Sbjct: 195 CTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW 232
Score = 35.4 bits (80), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 16/72 (22%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Query: 30 GHTAIVYSIDSHASGLIVSGSEDRFAKIW---KDGVCVQSIEHPGCVWDAKFLENGDIVT 86
GH V + +++G++D+ +++ +Q H G VW K+ G +V+
Sbjct: 119 GHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVS 178
Query: 87 ACSDGVTRIWTV 98
+D R+W +
Sbjct: 179 GSTDRTVRVWDI 190
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 4/103 (3%)
Query: 7 ISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIW--KDGVC 63
ISAS D TIR+W L G+++ + GHTA+V + + +VS + D + W D
Sbjct: 326 ISASMDTTIRIWDLENGELMYTLQGHTALV-GLLRLSDKFLVSAAADGSIRGWDANDYSR 384
Query: 64 VQSIEHPGCVWDAKFLENGDIVTACSDGVTRIWTVHSDKVADS 106
S H F + +I+ + S+ I+ + S K+ +
Sbjct: 385 KFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHA 427
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 3 GVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSID-SHASGLIVSGSEDRFAKIWK- 59
G +SAS D T+RLW + TG+ VGH + V S+D + I+SGS D+ K+W
Sbjct: 77 GAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWTI 136
Query: 60 DGVCVQSI 67
G C+ ++
Sbjct: 137 KGQCLATL 144
Score = 36.6 bits (83), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 60/144 (41%), Gaps = 15/144 (10%)
Query: 6 IISASHDCTIRLWALTGQVLMEMVGHTAIVYSID-------SHASGLIVSGSEDRFAKIW 58
IIS S D TI++W + GQ L ++GH V + S I+S D+ K W
Sbjct: 122 IISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAW 181
Query: 59 ---KDGVCVQSIEHPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSL----ELE 110
+ + I H + +G I +A DG +W + + K +L E+
Sbjct: 182 NLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQDEVF 241
Query: 111 AYASELSQYKLCRKKVGGLKLEDL 134
+ A ++Y L G+K+ L
Sbjct: 242 SLAFSPNRYWLAAATATGIKVFSL 265
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 58/123 (47%), Gaps = 24/123 (19%)
Query: 3 GVGIISASHDCTIRLWALTGQ-VLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIW-- 58
G + + + D IR+W + + ++M + GH +YS+D SG +VSGS DR +IW
Sbjct: 135 GKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDL 194
Query: 59 -----------KDGVCVQSIEHPGCVWDAKFLENGDIVTACSDGVTRIWTVHSDKVADSL 107
+DGV ++ PG D K++ G + D R+W + + + L
Sbjct: 195 RTGQCSLTLSIEDGVTTVAVS-PG---DGKYIAAGSL-----DRAVRVWDSETGFLVERL 245
Query: 108 ELE 110
+ E
Sbjct: 246 DSE 248
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 11/68 (16%)
Query: 2 PGVG--IISASHDCTIRLWALTGQVLMEMV--------GHTAIVYSIDSHASGL-IVSGS 50
PG G I + S D +R+W L+E + GH VYS+ G +VSGS
Sbjct: 216 PGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGS 275
Query: 51 EDRFAKIW 58
DR K+W
Sbjct: 276 LDRSVKLW 283
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 63/144 (43%), Gaps = 15/144 (10%)
Query: 6 IISASHDCTIRLWALTGQVLMEMV----GHTAIVYSIDSHASGL---IVSGSEDRFAKIW 58
I+SAS D TI+LW G+ + GH V + + L IVS S D+ K+W
Sbjct: 487 IVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVW 546
Query: 59 KDGVC-VQSI--EHPGCVWDAKFLENGDI-VTACSDGVTRIWTVHSDKVADSLE----LE 110
C ++S H G V +G + + DGV +W + K SLE +
Sbjct: 547 NLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIH 606
Query: 111 AYASELSQYKLCRKKVGGLKLEDL 134
A ++Y LC G+K+ DL
Sbjct: 607 ALCFSPNRYWLCAATEHGIKIWDL 630
Score = 36.2 bits (82), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 46/104 (44%), Gaps = 11/104 (10%)
Query: 6 IISASHDCTIRLWALT------GQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIW 58
I+SAS D +I LW LT G + GH+ V + + G +SGS D ++W
Sbjct: 398 IVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLW 457
Query: 59 KDGVCVQS---IEHPGCVWDAKF-LENGDIVTACSDGVTRIWTV 98
V + + H V F L+N IV+A D ++W
Sbjct: 458 DLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNT 501
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 70/149 (46%), Gaps = 15/149 (10%)
Query: 7 ISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSID-SHASGLIVSGSEDRFAKIWK-DGVC 63
+SAS D ++RLW L GQ + +GHT V S+ S + IVSG D ++W G C
Sbjct: 83 VSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKGEC 142
Query: 64 VQSIEHPG------CVWDAKFLENGDIVTACSDGVTRIWTVHSDKVADSLELEA-YASEL 116
+ ++ CV + L+ IV+ D + ++W + + ++ L+ Y + +
Sbjct: 143 MHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSV 202
Query: 117 S---QYKLCRK--KVGGLKLEDLPGLEAL 140
+ LC K G +L DL EAL
Sbjct: 203 TVSPDGSLCASSDKDGVARLWDLTKGEAL 231
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 6 IISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIW 58
I+S D +++W L TG+++ ++ GHT V S+ G L S +D A++W
Sbjct: 169 IVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLW 223
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 46/93 (49%), Gaps = 4/93 (4%)
Query: 6 IISASHDCTIRLW-ALTGQVLMEMVGHTAIVYSIDSHA-SGLIVSGSEDRFAKIW--KDG 61
+ S S D + +W +L G+ L + GHT ++SID + V+GS D K+W +G
Sbjct: 47 LFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNG 106
Query: 62 VCVQSIEHPGCVWDAKFLENGDIVTACSDGVTR 94
CV + + P V +F G+ A D V +
Sbjct: 107 QCVATWKSPVPVKRVEFSPCGNYFLAILDNVMK 139
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 36.6 bits (83), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 7 ISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSID-SHASGLIVSGSEDRFAKIW 58
IS+S D T+RLW L TG VGH + VYS+ S + I+S +R K+W
Sbjct: 92 ISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLW 145
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 55/115 (47%), Gaps = 8/115 (6%)
Query: 6 IISASHDCTIRLW-ALTGQVLMEMVGHTAIV---YSIDSHASGLIVSGSEDRFAKIW--K 59
I + S D +++W + TG+++ H+ V + + L+ +GS D F K+W
Sbjct: 679 IATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN 738
Query: 60 DGVCVQSI-EHPGCVWDAKFLENGDIVTACS-DGVTRIWTVHSDKVADSLELEAY 112
C ++ H V +F + +++ +CS DG R+W V S S+ ++ +
Sbjct: 739 QKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRF 793
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
Query: 23 QVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK----DGVCVQSIEHPGCVWDAK 77
+V VGH V I A G ++S SED ++W D V +Q+ H V D +
Sbjct: 1001 RVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQA--HQETVKDFR 1058
Query: 78 FLENGDIVTACSDGVTRIWTVHSDKV 103
L++ +++ DG ++W V + ++
Sbjct: 1059 LLQDSRLLSWSFDGTVKVWNVITGRI 1084
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 55/115 (47%), Gaps = 8/115 (6%)
Query: 6 IISASHDCTIRLW-ALTGQVLMEMVGHTAIV---YSIDSHASGLIVSGSEDRFAKIW--K 59
I + S D +++W + TG+++ H+ V + + L+ +GS D F K+W
Sbjct: 672 IATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN 731
Query: 60 DGVCVQSI-EHPGCVWDAKFLENGDIVTACS-DGVTRIWTVHSDKVADSLELEAY 112
C ++ H V +F + +++ +CS DG R+W V S S+ ++ +
Sbjct: 732 QKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRF 786
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
Query: 23 QVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK----DGVCVQSIEHPGCVWDAK 77
+V VGH V I A G ++S SED ++W D V +Q+ H V D +
Sbjct: 994 RVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQA--HQETVKDFR 1051
Query: 78 FLENGDIVTACSDGVTRIWTVHSDKV 103
L++ +++ DG ++W V + ++
Sbjct: 1052 LLQDSRLLSWSFDGTVKVWNVITGRI 1077
>pdb|3GAE|A Chain A, Crystal Structure Of Pul
pdb|3GAE|B Chain B, Crystal Structure Of Pul
Length = 253
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 55/111 (49%), Gaps = 19/111 (17%)
Query: 376 PVIDILRMTILHPDGASLLLKHVENQNDVLMEMIEKVSSNPTLPANLLTGIRAVTNLFKN 435
P DI+R L++K + +D+ + IE+ N + +LT +R + N F N
Sbjct: 73 PAYDIVR----------LIVKKLPYSSDI-KDYIEEGLGNKNITLTMLT-VRILVNCFNN 120
Query: 436 SSW-YSWLQKNRS-----EILDA-FSSCYSSSNKNVQLSYSTLILNYAVLL 479
+W L+ N+ E +D FS + ++N+ ++ STLI NY+ L+
Sbjct: 121 ENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALV 171
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 62/144 (43%), Gaps = 13/144 (9%)
Query: 6 IISASHDCTIRLWALTG--QVLMEMVGHTAIVYSID---SHASGLIVSGSEDRFAKIWKD 60
I+S S D TI+LW G + ++ H+ V + + ++ +IVS D+ K+W
Sbjct: 143 IVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNL 202
Query: 61 GVC---VQSIEHPGCVWDAKFLENGDIV-TACSDGVTRIWTVHSDKVADSLE----LEAY 112
C I H G + +G + + DG +W ++ K +L+ + A
Sbjct: 203 ANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINAL 262
Query: 113 ASELSQYKLCRKKVGGLKLEDLPG 136
++Y LC +K+ DL G
Sbjct: 263 CFSPNRYWLCAATGPSIKIWDLEG 286
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 55/154 (35%), Gaps = 56/154 (36%)
Query: 6 IISASHDCTIRLWAL--------------------------------------------- 20
I+SAS D TI +W L
Sbjct: 54 ILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLW 113
Query: 21 ---TGQVLMEMVGHTAIVYSID-SHASGLIVSGSEDRFAKIWKD-GVC---VQSIEHPGC 72
TG VGHT V S+ S + IVSGS D+ K+W GVC VQ H
Sbjct: 114 DLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEW 173
Query: 73 VWDAKFLENGD--IVTACS-DGVTRIWTVHSDKV 103
V +F N I+ +C D + ++W + + K+
Sbjct: 174 VSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKL 207
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 62/144 (43%), Gaps = 13/144 (9%)
Query: 6 IISASHDCTIRLWALTG--QVLMEMVGHTAIVYSID---SHASGLIVSGSEDRFAKIWKD 60
I+S S D TI+LW G + ++ H+ V + + ++ +IVS D+ K+W
Sbjct: 120 IVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNL 179
Query: 61 GVC---VQSIEHPGCVWDAKFLENGDIV-TACSDGVTRIWTVHSDKVADSLE----LEAY 112
C I H G + +G + + DG +W ++ K +L+ + A
Sbjct: 180 ANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINAL 239
Query: 113 ASELSQYKLCRKKVGGLKLEDLPG 136
++Y LC +K+ DL G
Sbjct: 240 CFSPNRYWLCAATGPSIKIWDLEG 263
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 55/154 (35%), Gaps = 56/154 (36%)
Query: 6 IISASHDCTIRLWAL--------------------------------------------- 20
I+SAS D TI +W L
Sbjct: 31 ILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLW 90
Query: 21 ---TGQVLMEMVGHTAIVYSID-SHASGLIVSGSEDRFAKIWKD-GVC---VQSIEHPGC 72
TG VGHT V S+ S + IVSGS D+ K+W GVC VQ H
Sbjct: 91 DLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEW 150
Query: 73 VWDAKFLENGD--IVTACS-DGVTRIWTVHSDKV 103
V +F N I+ +C D + ++W + + K+
Sbjct: 151 VSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKL 184
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 11/102 (10%)
Query: 6 IISASHDCTIRLWALTGQVLMEMVG----HTAIVYSIDSHASG-LIVSGSEDRFAKIWK- 59
+ + S D ++ +W + + E V HT V + H S L+ S S D K+++
Sbjct: 120 LATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYRE 179
Query: 60 ---DGVCVQSIE-HPGCVWDAKFLENGDIVTACSDGVT-RIW 96
D VC ++E H VW F +G + +CSD T RIW
Sbjct: 180 EEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 221
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 46/106 (43%), Gaps = 16/106 (15%)
Query: 6 IISASHDCTIRLWALT--GQVL------MEMVGHTAIVYSIDSH--ASGLIVSGSEDRFA 55
I S S DCT+ +W + G VL + + GHT V + H A +++S D
Sbjct: 97 IASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVI 156
Query: 56 KIWKDGVCVQSIE-----HPGCVWDAKFLENGDIV-TACSDGVTRI 95
+W G + HP ++ + +G ++ T+C D R+
Sbjct: 157 LVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRV 202
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 6 IISASHDCTIRLWAL-TGQVLMEMVGHTA-IVYSIDSHASGLIVSGSEDRFAKIW 58
+I+AS D TI++W T + + GH + + +++ +I+SGSED KIW
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 55/115 (47%), Gaps = 8/115 (6%)
Query: 6 IISASHDCTIRLW-ALTGQVLMEMVGHTAIV---YSIDSHASGLIVSGSEDRFAKIW--K 59
I + S D +++W ++TG+++ H+ V + +S L+ +GS D F K+W
Sbjct: 678 IATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLN 737
Query: 60 DGVCVQSI-EHPGCVWDAKFLENGDIVTACS-DGVTRIWTVHSDKVADSLELEAY 112
C ++ H V +F + ++ +CS DG ++W S S+ ++ +
Sbjct: 738 QKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQF 792
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 6 IISASHDCTIRLWAL-TGQVLMEMVGHTA-IVYSIDSHASGLIVSGSEDRFAKIWK 59
+I+AS D TI++W T + + GH + + +++ +I+SGSED KIW
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 6 IISASHDCTIRLWAL-TGQVLMEMVGHTA-IVYSIDSHASGLIVSGSEDRFAKIW 58
+I+AS D TI++W T + + GH + + +++ +I+SGSED KIW
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 6 IISASHDCTIRLWAL-TGQVLMEMVGHTA-IVYSIDSHASGLIVSGSEDRFAKIW 58
+I+AS D TI++W T + + GH + + +++ +I+SGSED KIW
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 32.7 bits (73), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 18/123 (14%)
Query: 6 IISASHDCTIRLWALTGQVLMEMVG------HTAIVYS--IDSHASGLIVSGSEDRFAKI 57
+I+ S D T LW +T + + G HTA V S I+S + + +SGS D ++
Sbjct: 173 LITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRL 232
Query: 58 WKDGVCVQSIE----HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAY 112
W + +++ H G + KF +G T DG R++ + + +L+ Y
Sbjct: 233 WDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGH-----QLQVY 287
Query: 113 ASE 115
E
Sbjct: 288 NRE 290
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 32.0 bits (71), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 44/109 (40%), Gaps = 7/109 (6%)
Query: 6 IISASHDCTIRLWALTG----QVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWKDG 61
+++ S D +I +W + + +VGH A V +D IVS S DR K+W
Sbjct: 226 MVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVD-FDDKYIVSASGDRTIKVWNTS 284
Query: 62 VCVQSIEHPGCVWDAKFLENGD--IVTACSDGVTRIWTVHSDKVADSLE 108
C G L+ D +V+ SD R+W + LE
Sbjct: 285 TCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLE 333
Score = 28.5 bits (62), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 46 IVSGSEDRFAKIWKDGV--CVQSIE-HPGCVWDAKFLENGDIVTACSDGVTRIWTVHSDK 102
IVSG D KIW C + + H G V ++ E I+T SD R+W V++ +
Sbjct: 146 IVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERV-IITGSSDSTVRVWDVNTGE 204
Query: 103 VADSL 107
+ ++L
Sbjct: 205 MLNTL 209
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 32.0 bits (71), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 45/106 (42%), Gaps = 16/106 (15%)
Query: 6 IISASHDCTIRLWALT--GQVL------MEMVGHTAIVYSIDSH--ASGLIVSGSEDRFA 55
I S S DCT+ +W + G VL + + GHT V + H A +++S D
Sbjct: 97 IASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVI 156
Query: 56 KIWKDGVCVQSIE-----HPGCVWDAKFLENGD-IVTACSDGVTRI 95
+W G + HP ++ + +G I T+C D R+
Sbjct: 157 LVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRV 202
>pdb|1G2W|A Chain A, E177s Mutant Of The Pyridoxal-5'-phosphate Enzyme D-amino
Acid Aminotransferase
pdb|1G2W|B Chain B, E177s Mutant Of The Pyridoxal-5'-phosphate Enzyme D-amino
Acid Aminotransferase
Length = 282
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 44/110 (40%), Gaps = 10/110 (9%)
Query: 13 CTIRLWALTGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWKDGVCVQSIEHPGC 72
C I+ L G VL + H Y H + + SGS I KDG+ HP
Sbjct: 142 CDIKSLNLLGAVLAKQEAHEKGCYEAILHRNNTVTSGSSSNVFGI-KDGILYT---HPAN 197
Query: 73 VWDAKFLENGDIVTACSDGVTR-----IWTVHSDKVADSLELEAYASELS 117
K + D+V AC++ + +T H D L + + SE++
Sbjct: 198 NMILKGITR-DVVIACANEINMPVKEIPFTTHEALKMDELFVTSTTSEIT 246
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 3 GVGIISASHDCTIRLWALTGQVLMEMVGHTA---IVYSIDSHASGLIVSGSEDRFAKIW 58
G + +AS D T ++W L+ +++ H A ++ I + +++GS D+ K W
Sbjct: 98 GSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFW 156
>pdb|3M9L|A Chain A, Crystal Structure Of Probable Had Family Hydrolase From
Pseudomonas Fluorescens Pf-5
pdb|2YBD|A Chain A, Crystal Structure Of Probable Had Family Hydrolase From
Pseudomonas Fluorescens Pf-5 With Bound Phosphate
pdb|3R09|A Chain A, Crystal Structure Of Probable Had Family Hydrolase From
Pseudomonas Fluorescens Pf-5 With Bound Mg
Length = 205
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 196 DYVFDVDIGDGEPTRKLPYNRSDNPYDAADKW 227
DY FD+D G TR + N DNP+ W
Sbjct: 152 DYRFDLDCGRAAGTRTVLVNLPDNPWPELTDW 183
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 38/181 (20%), Positives = 77/181 (42%), Gaps = 38/181 (20%)
Query: 6 IISASHDCTIRLWA---LTGQVLMEMVGHTAIVYSID---SHASGLIVSGSEDRFAKIWK 59
+ S+S+D T+R+W + + + GH V+S D + + SGS+D ++WK
Sbjct: 168 LASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWK 227
Query: 60 ----------DGVCVQSIE--HPGCVWDAKFLENGDIVTACSDGVTRIWTVHSDKVADSL 107
+ VC + H V++ + NG I + +DGV
Sbjct: 228 YMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADGV--------------- 272
Query: 108 ELEAYASELSQYKLCRKKVGGLKLEDLPGLEALQIPGTNAGQTKVVREGDNGVAYSWDMK 167
L Y ++K+ K+ + ++ ++ L++ G+T + GD+G+ W ++
Sbjct: 273 -LAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELN----GKTILATGGDDGIVNFWSLE 327
Query: 168 E 168
+
Sbjct: 328 K 328
>pdb|2D88|A Chain A, Solution Structure Of The Ch Domain From Human Mical-3
Protein
Length = 121
Score = 28.5 bits (62), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 299 DAAQFDGILKKIMEFNNALLFDLEKKNLSMSELETSRVAAVV 340
D FD + ++ +E NN L FD+ +K L +S + T + A V
Sbjct: 53 DLIDFDSLDEQNVEKNNQLAFDIAEKELGISPIMTGKEMASV 94
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 66/170 (38%), Gaps = 45/170 (26%)
Query: 38 IDSHASGLIVSGSEDRFAKIWKDGVCVQSIEHPGCVWDAKFLENGDIVTACSDGVTRIWT 97
ID+HA G V+ + A I +DG EH G KF VT +D + +IW
Sbjct: 141 IDAHAIG--VNSASWAPATIEEDG------EHNGTKESRKF------VTGGADNLVKIWK 186
Query: 98 V---------------HSDKVAD-----SLELEAYASELSQYKLC----------RKKVG 127
HSD V D ++ L +Y + +SQ + C K
Sbjct: 187 YNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKT 246
Query: 128 GLKLEDLPGLEALQIPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEV 177
LK E P + + + +G + GDN V + E KW+ GEV
Sbjct: 247 LLKEEKFPDV-LWRASWSLSGNVLALSGGDNKVTLWKENLEGKWEPAGEV 295
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,675,829
Number of Sequences: 62578
Number of extensions: 714750
Number of successful extensions: 2036
Number of sequences better than 100.0: 66
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 1825
Number of HSP's gapped (non-prelim): 161
length of query: 563
length of database: 14,973,337
effective HSP length: 104
effective length of query: 459
effective length of database: 8,465,225
effective search space: 3885538275
effective search space used: 3885538275
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)