Query 008510
Match_columns 563
No_of_seqs 346 out of 2994
Neff 9.0
Searched_HMMs 46136
Date Thu Mar 28 13:04:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008510.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008510hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0301 Phospholipase A2-activ 100.0 5.8E-96 1E-100 743.5 42.7 535 1-560 188-745 (745)
2 PF08324 PUL: PUL domain; Int 100.0 1.7E-47 3.6E-52 379.3 20.0 261 288-556 1-268 (268)
3 PF09070 PFU: PFU (PLAA family 99.9 1.6E-26 3.4E-31 191.1 6.5 110 142-253 2-114 (116)
4 KOG0272 U4/U6 small nuclear ri 99.9 7.6E-25 1.6E-29 213.2 12.3 202 3-222 231-458 (459)
5 KOG0271 Notchless-like WD40 re 99.9 2.2E-23 4.8E-28 200.4 16.1 207 2-225 126-398 (480)
6 KOG0279 G protein beta subunit 99.9 2.4E-22 5.2E-27 186.5 20.2 212 2-224 74-313 (315)
7 KOG0272 U4/U6 small nuclear ri 99.9 3E-23 6.6E-28 202.1 14.2 205 2-224 186-418 (459)
8 KOG0316 Conserved WD40 repeat- 99.9 5.6E-22 1.2E-26 179.8 16.3 220 1-223 27-276 (307)
9 KOG0286 G-protein beta subunit 99.9 1.9E-21 4.2E-26 181.5 17.6 182 1-222 154-343 (343)
10 KOG0271 Notchless-like WD40 re 99.9 1.3E-21 2.8E-26 188.4 15.7 204 2-222 216-479 (480)
11 KOG0263 Transcription initiati 99.9 8.6E-22 1.9E-26 205.7 14.6 183 2-226 462-651 (707)
12 KOG0281 Beta-TrCP (transducin 99.9 2.4E-22 5.3E-27 191.0 7.8 204 2-224 206-428 (499)
13 KOG0315 G-protein beta subunit 99.9 8.1E-20 1.8E-24 167.1 20.4 219 4-225 11-289 (311)
14 KOG0279 G protein beta subunit 99.8 8E-20 1.7E-24 169.8 19.7 207 3-228 28-266 (315)
15 KOG0266 WD40 repeat-containing 99.8 5.5E-19 1.2E-23 187.9 21.9 206 2-223 214-453 (456)
16 KOG0285 Pleiotropic regulator 99.8 1.4E-19 3.1E-24 173.0 15.3 206 3-226 163-391 (460)
17 KOG0282 mRNA splicing factor [ 99.8 5.8E-20 1.3E-24 182.1 11.8 209 2-225 226-463 (503)
18 KOG0266 WD40 repeat-containing 99.8 6.7E-19 1.5E-23 187.3 20.7 206 2-225 170-410 (456)
19 KOG0265 U5 snRNP-specific prot 99.8 7.1E-19 1.5E-23 165.1 16.0 220 2-225 58-297 (338)
20 KOG0291 WD40-repeat-containing 99.8 1E-18 2.3E-23 181.2 18.7 183 3-226 319-510 (893)
21 KOG0285 Pleiotropic regulator 99.8 2E-18 4.4E-23 165.2 16.5 208 4-224 206-439 (460)
22 KOG0276 Vesicle coat complex C 99.8 3.1E-18 6.8E-23 174.2 18.2 164 4-170 68-260 (794)
23 KOG0277 Peroxisomal targeting 99.8 1.2E-18 2.7E-23 159.9 13.7 210 3-222 73-307 (311)
24 KOG0295 WD40 repeat-containing 99.8 1.6E-18 3.4E-23 166.4 14.8 203 2-223 161-405 (406)
25 KOG0281 Beta-TrCP (transducin 99.8 1.6E-19 3.5E-24 171.9 7.9 216 2-223 246-476 (499)
26 KOG0291 WD40-repeat-containing 99.8 7.8E-18 1.7E-22 174.8 20.4 241 2-247 361-637 (893)
27 KOG0273 Beta-transducin family 99.8 7.4E-18 1.6E-22 166.7 19.1 207 2-226 246-484 (524)
28 KOG0265 U5 snRNP-specific prot 99.8 7.8E-18 1.7E-22 158.1 17.8 198 2-218 101-332 (338)
29 PTZ00421 coronin; Provisional 99.8 1.6E-17 3.4E-22 176.6 22.5 170 2-173 87-296 (493)
30 KOG0295 WD40 repeat-containing 99.8 1.2E-18 2.6E-23 167.3 12.2 208 5-231 122-371 (406)
31 KOG0283 WD40 repeat-containing 99.8 4.5E-18 9.8E-23 179.5 15.6 190 1-225 277-533 (712)
32 PLN00181 protein SPA1-RELATED; 99.8 6E-17 1.3E-21 184.6 25.8 214 3-223 545-792 (793)
33 KOG0319 WD40-repeat-containing 99.8 7.4E-18 1.6E-22 174.8 13.9 178 4-223 425-618 (775)
34 KOG0263 Transcription initiati 99.8 4.3E-18 9.4E-23 178.2 12.0 101 3-103 505-611 (707)
35 KOG0645 WD40 repeat protein [G 99.7 9.5E-17 2.1E-21 148.9 18.6 207 2-223 72-310 (312)
36 KOG0313 Microtubule binding pr 99.7 2.8E-17 6.2E-22 158.7 15.6 209 3-225 115-377 (423)
37 KOG0313 Microtubule binding pr 99.7 5.9E-17 1.3E-21 156.5 17.4 184 2-223 204-417 (423)
38 PTZ00420 coronin; Provisional 99.7 2.9E-16 6.4E-21 167.9 24.0 132 3-136 87-249 (568)
39 KOG0645 WD40 repeat protein [G 99.7 2.4E-16 5.3E-21 146.2 20.0 184 3-223 27-224 (312)
40 KOG0643 Translation initiation 99.7 2.5E-16 5.4E-21 145.8 19.9 225 2-228 21-321 (327)
41 KOG0316 Conserved WD40 repeat- 99.7 8.8E-17 1.9E-21 146.2 16.0 163 2-169 70-259 (307)
42 KOG1332 Vesicle coat complex C 99.7 3.1E-17 6.8E-22 149.9 12.9 198 3-224 23-241 (299)
43 KOG0292 Vesicle coat complex C 99.7 4.7E-17 1E-21 171.3 15.2 206 3-226 63-282 (1202)
44 KOG0286 G-protein beta subunit 99.7 2.4E-16 5.2E-21 147.6 18.3 181 2-224 66-259 (343)
45 KOG0293 WD40 repeat-containing 99.7 6.8E-17 1.5E-21 157.4 14.8 100 2-101 235-344 (519)
46 KOG0274 Cdc4 and related F-box 99.7 2.2E-16 4.8E-21 168.3 19.6 202 3-225 261-483 (537)
47 KOG0640 mRNA cleavage stimulat 99.7 8.7E-17 1.9E-21 151.4 14.3 199 2-203 123-372 (430)
48 KOG0284 Polyadenylation factor 99.7 3.3E-17 7.1E-22 159.5 11.4 100 3-102 192-297 (464)
49 KOG0276 Vesicle coat complex C 99.7 1.5E-16 3.2E-21 162.1 15.9 132 4-137 110-259 (794)
50 PTZ00420 coronin; Provisional 99.7 7.5E-16 1.6E-20 164.8 22.0 134 9-142 50-204 (568)
51 KOG0301 Phospholipase A2-activ 99.7 1.3E-16 2.8E-21 164.6 14.7 199 3-224 71-288 (745)
52 KOG0310 Conserved WD40 repeat- 99.7 4.2E-15 9.2E-20 148.1 24.6 175 2-218 122-303 (487)
53 KOG0278 Serine/threonine kinas 99.7 3.7E-17 8E-22 149.8 8.9 219 2-224 28-297 (334)
54 KOG0319 WD40-repeat-containing 99.7 3.4E-14 7.3E-19 147.9 30.5 212 3-230 336-583 (775)
55 KOG0318 WD40 repeat stress pro 99.7 3E-15 6.6E-20 150.1 22.0 153 5-157 162-331 (603)
56 KOG0296 Angio-associated migra 99.7 2.4E-15 5.1E-20 144.9 19.3 206 2-223 117-397 (399)
57 PLN00181 protein SPA1-RELATED; 99.7 5.2E-15 1.1E-19 168.8 24.7 212 2-224 494-738 (793)
58 KOG0318 WD40 repeat stress pro 99.7 5.3E-15 1.1E-19 148.4 21.3 224 2-228 201-521 (603)
59 KOG0284 Polyadenylation factor 99.7 1.2E-16 2.7E-21 155.5 9.3 205 2-224 107-337 (464)
60 KOG0292 Vesicle coat complex C 99.7 3.8E-15 8.1E-20 157.2 20.9 138 5-142 107-287 (1202)
61 KOG0288 WD40 repeat protein Ti 99.7 4.2E-16 9E-21 152.1 12.9 205 2-222 230-459 (459)
62 KOG0275 Conserved WD40 repeat- 99.7 1.6E-16 3.4E-21 150.3 9.5 106 2-107 274-386 (508)
63 KOG0294 WD40 repeat-containing 99.7 1.2E-15 2.6E-20 144.3 15.3 209 1-226 51-283 (362)
64 KOG0275 Conserved WD40 repeat- 99.7 3.9E-16 8.5E-21 147.7 11.8 139 2-142 224-385 (508)
65 KOG0273 Beta-transducin family 99.7 1.6E-15 3.5E-20 150.2 16.7 155 2-158 328-505 (524)
66 KOG0277 Peroxisomal targeting 99.7 8.8E-16 1.9E-20 141.3 13.6 136 2-139 116-269 (311)
67 PTZ00421 coronin; Provisional 99.7 1.2E-14 2.6E-19 154.6 23.9 138 3-142 32-205 (493)
68 KOG1446 Histone H3 (Lys4) meth 99.7 1.8E-14 3.9E-19 136.9 21.3 207 2-224 25-262 (311)
69 KOG0308 Conserved WD40 repeat- 99.7 2.3E-16 4.9E-21 161.7 9.0 196 3-229 37-248 (735)
70 KOG0274 Cdc4 and related F-box 99.7 2.2E-15 4.8E-20 160.7 16.7 212 3-226 218-443 (537)
71 KOG1407 WD40 repeat protein [F 99.6 1E-14 2.2E-19 134.8 18.4 214 1-216 30-273 (313)
72 KOG0283 WD40 repeat-containing 99.6 5.1E-15 1.1E-19 156.6 18.6 162 3-166 380-575 (712)
73 cd00200 WD40 WD40 domain, foun 99.6 4.7E-14 1E-18 138.5 24.1 202 3-222 63-289 (289)
74 KOG0310 Conserved WD40 repeat- 99.6 5.6E-15 1.2E-19 147.3 16.1 191 2-213 79-286 (487)
75 KOG0315 G-protein beta subunit 99.6 2.5E-14 5.4E-19 131.4 17.8 166 2-169 94-290 (311)
76 KOG0264 Nucleosome remodeling 99.6 5.3E-15 1.2E-19 146.4 14.4 193 4-226 191-406 (422)
77 KOG0303 Actin-binding protein 99.6 6E-15 1.3E-19 143.3 14.4 160 2-163 93-280 (472)
78 KOG0772 Uncharacterized conser 99.6 8.2E-15 1.8E-19 146.6 14.7 109 29-137 265-396 (641)
79 KOG0282 mRNA splicing factor [ 99.6 1E-14 2.2E-19 145.2 14.9 203 2-222 269-503 (503)
80 KOG0647 mRNA export protein (c 99.6 5.8E-14 1.3E-18 132.4 19.2 135 3-137 40-186 (347)
81 KOG0308 Conserved WD40 repeat- 99.6 9.7E-15 2.1E-19 149.8 14.6 159 2-162 84-271 (735)
82 cd00200 WD40 WD40 domain, foun 99.6 1.6E-13 3.5E-18 134.6 22.6 204 2-224 20-249 (289)
83 KOG0268 Sof1-like rRNA process 99.6 1.8E-14 3.8E-19 138.7 13.8 202 5-223 81-344 (433)
84 KOG0306 WD40-repeat-containing 99.6 7.3E-14 1.6E-18 145.5 17.2 204 4-225 425-665 (888)
85 KOG0288 WD40 repeat protein Ti 99.6 3.1E-15 6.8E-20 146.1 6.3 213 4-229 188-422 (459)
86 KOG0289 mRNA splicing factor [ 99.6 1.2E-13 2.6E-18 135.9 17.3 154 2-180 314-475 (506)
87 KOG0267 Microtubule severing p 99.6 5.6E-15 1.2E-19 153.2 7.9 157 3-159 82-251 (825)
88 KOG0300 WD40 repeat-containing 99.6 5.3E-14 1.1E-18 133.1 13.6 153 2-155 283-449 (481)
89 KOG0305 Anaphase promoting com 99.6 1.3E-13 2.9E-18 142.3 17.5 205 2-225 228-462 (484)
90 KOG1273 WD40 repeat protein [G 99.5 1.7E-13 3.7E-18 129.8 16.5 78 3-80 35-116 (405)
91 KOG0299 U3 snoRNP-associated p 99.5 7.4E-14 1.6E-18 138.4 14.6 220 2-227 153-413 (479)
92 KOG0639 Transducin-like enhanc 99.5 2.8E-14 6E-19 142.3 11.3 214 2-223 476-703 (705)
93 KOG1332 Vesicle coat complex C 99.5 1.2E-13 2.6E-18 126.7 14.5 174 3-177 70-297 (299)
94 KOG0300 WD40 repeat-containing 99.5 1.7E-13 3.6E-18 129.8 14.8 209 5-224 162-428 (481)
95 KOG0296 Angio-associated migra 99.5 1.5E-12 3.2E-17 125.9 21.4 221 3-226 76-358 (399)
96 KOG0646 WD40 repeat protein [G 99.5 2.4E-13 5.3E-18 135.0 16.4 202 3-230 93-313 (476)
97 KOG0278 Serine/threonine kinas 99.5 9.9E-14 2.1E-18 127.5 12.2 141 2-142 111-261 (334)
98 KOG0270 WD40 repeat-containing 99.5 9.7E-13 2.1E-17 130.0 17.7 164 4-168 257-450 (463)
99 KOG0640 mRNA cleavage stimulat 99.5 5.4E-13 1.2E-17 126.1 13.6 202 3-222 184-424 (430)
100 KOG0973 Histone transcription 99.5 9.4E-13 2E-17 143.0 17.4 177 2-182 24-266 (942)
101 KOG0321 WD40 repeat-containing 99.5 5.4E-13 1.2E-17 136.9 14.7 211 4-231 113-397 (720)
102 KOG0269 WD40 repeat-containing 99.5 2.3E-13 5.1E-18 142.4 12.0 166 1-167 98-296 (839)
103 KOG0299 U3 snoRNP-associated p 99.5 9.5E-13 2.1E-17 130.6 15.3 139 2-143 213-364 (479)
104 KOG0302 Ribosome Assembly prot 99.5 4.3E-13 9.3E-18 129.9 11.9 99 3-102 270-381 (440)
105 KOG0269 WD40 repeat-containing 99.5 2.8E-13 6E-18 141.8 11.4 153 3-156 146-319 (839)
106 KOG1036 Mitotic spindle checkp 99.4 5.7E-12 1.2E-16 119.5 16.5 137 3-139 25-167 (323)
107 KOG2445 Nuclear pore complex c 99.4 1E-11 2.2E-16 117.7 16.8 203 2-224 24-256 (361)
108 KOG0264 Nucleosome remodeling 99.4 3.3E-12 7.2E-17 126.8 13.9 100 2-101 239-349 (422)
109 KOG0306 WD40-repeat-containing 99.4 1.2E-11 2.7E-16 129.2 18.5 186 5-224 387-580 (888)
110 KOG0289 mRNA splicing factor [ 99.4 4.3E-12 9.3E-17 125.1 14.1 182 4-225 232-420 (506)
111 KOG4283 Transcription-coupled 99.4 1.9E-11 4.1E-16 115.1 17.7 215 2-224 113-365 (397)
112 KOG0293 WD40 repeat-containing 99.4 2.2E-12 4.9E-17 126.2 12.0 171 2-172 280-475 (519)
113 KOG0772 Uncharacterized conser 99.4 3.9E-12 8.5E-17 127.7 13.7 99 4-102 282-397 (641)
114 KOG1034 Transcriptional repres 99.4 4.2E-12 9.1E-17 121.2 13.1 98 4-101 106-213 (385)
115 KOG0267 Microtubule severing p 99.4 5.9E-13 1.3E-17 138.4 6.5 100 3-102 40-145 (825)
116 KOG2048 WD40 repeat protein [G 99.4 1E-10 2.2E-15 121.4 22.1 140 2-141 79-239 (691)
117 KOG0305 Anaphase promoting com 99.3 1.4E-11 3E-16 127.5 14.3 152 3-157 270-442 (484)
118 KOG1407 WD40 repeat protein [F 99.3 1.9E-11 4.2E-16 113.3 13.5 189 26-231 14-226 (313)
119 KOG0268 Sof1-like rRNA process 99.3 4.3E-12 9.3E-17 122.5 9.4 232 24-277 58-336 (433)
120 KOG0649 WD40 repeat protein [G 99.3 4.6E-11 1E-15 109.7 15.5 140 5-144 128-283 (325)
121 KOG1445 Tumor-specific antigen 99.3 1.1E-11 2.4E-16 126.9 12.7 101 2-102 639-753 (1012)
122 KOG1036 Mitotic spindle checkp 99.3 1.3E-10 2.8E-15 110.4 18.7 100 2-102 64-166 (323)
123 KOG0643 Translation initiation 99.3 7.2E-11 1.6E-15 109.9 16.7 183 27-225 5-221 (327)
124 KOG0644 Uncharacterized conser 99.3 1.4E-12 3E-17 137.4 5.6 206 2-226 201-428 (1113)
125 KOG0646 WD40 repeat protein [G 99.3 2.4E-11 5.2E-16 121.0 13.9 162 2-173 134-313 (476)
126 KOG0270 WD40 repeat-containing 99.3 2.1E-11 4.6E-16 120.7 13.4 136 2-137 191-362 (463)
127 TIGR03866 PQQ_ABC_repeats PQQ- 99.3 6.2E-10 1.3E-14 111.5 24.0 167 2-169 41-239 (300)
128 KOG0641 WD40 repeat protein [G 99.3 3.7E-10 8E-15 102.6 19.3 216 2-223 100-348 (350)
129 KOG1446 Histone H3 (Lys4) meth 99.3 2.4E-10 5.2E-15 109.0 18.1 164 4-169 69-264 (311)
130 KOG0973 Histone transcription 99.3 1.1E-10 2.4E-15 127.2 17.9 100 2-101 80-203 (942)
131 KOG1538 Uncharacterized conser 99.3 4.9E-10 1.1E-14 115.7 21.2 81 2-83 23-106 (1081)
132 KOG0302 Ribosome Assembly prot 99.3 6.9E-11 1.5E-15 114.8 13.9 134 4-137 166-334 (440)
133 TIGR03866 PQQ_ABC_repeats PQQ- 99.3 4.9E-10 1.1E-14 112.2 20.9 168 3-171 1-191 (300)
134 KOG0321 WD40 repeat-containing 99.3 5.5E-11 1.2E-15 122.4 13.5 207 4-224 65-347 (720)
135 KOG4283 Transcription-coupled 99.3 1.1E-10 2.4E-15 110.0 14.2 196 2-225 55-277 (397)
136 KOG0639 Transducin-like enhanc 99.3 2.7E-11 5.8E-16 121.3 10.7 133 2-137 520-665 (705)
137 KOG0642 Cell-cycle nuclear pro 99.2 1.5E-10 3.3E-15 117.9 15.7 100 4-103 307-430 (577)
138 KOG0647 mRNA export protein (c 99.2 2.8E-10 6.1E-15 107.7 16.4 98 2-101 83-186 (347)
139 KOG0641 WD40 repeat protein [G 99.2 2.1E-10 4.7E-15 104.1 14.3 100 2-101 193-305 (350)
140 KOG2096 WD40 repeat protein [G 99.2 1.2E-10 2.6E-15 110.9 12.9 189 25-227 79-311 (420)
141 KOG2096 WD40 repeat protein [G 99.2 2.1E-10 4.6E-15 109.2 14.1 99 3-101 199-310 (420)
142 KOG0294 WD40 repeat-containing 99.2 5.7E-10 1.2E-14 106.3 16.4 132 5-137 99-239 (362)
143 KOG1274 WD40 repeat protein [G 99.2 4.9E-10 1.1E-14 120.0 16.9 102 2-103 65-172 (933)
144 KOG0307 Vesicle coat complex C 99.2 7.8E-11 1.7E-15 128.9 9.3 204 5-224 82-327 (1049)
145 KOG0649 WD40 repeat protein [G 99.2 3.3E-09 7.2E-14 97.7 18.2 139 3-143 22-194 (325)
146 KOG1007 WD repeat protein TSSC 99.1 4.2E-10 9E-15 105.9 11.4 98 2-100 183-290 (370)
147 KOG4378 Nuclear protein COP1 [ 99.1 6.3E-09 1.4E-13 104.5 17.3 163 4-168 92-281 (673)
148 KOG1274 WD40 repeat protein [G 99.1 2.9E-09 6.3E-14 114.2 15.9 135 2-136 107-263 (933)
149 KOG2106 Uncharacterized conser 99.1 1.7E-08 3.6E-13 101.8 20.1 202 3-221 257-518 (626)
150 KOG2445 Nuclear pore complex c 99.1 5.9E-09 1.3E-13 99.2 15.9 201 3-224 73-318 (361)
151 KOG2048 WD40 repeat protein [G 99.0 4.6E-08 9.9E-13 102.0 22.9 139 3-141 37-190 (691)
152 KOG1408 WD40 repeat protein [F 99.0 1.8E-09 3.8E-14 112.6 12.2 207 2-225 470-714 (1080)
153 KOG1009 Chromatin assembly com 99.0 1.4E-09 2.9E-14 107.0 10.7 101 4-104 27-158 (434)
154 KOG1524 WD40 repeat-containing 99.0 2.2E-09 4.9E-14 108.6 12.5 80 4-83 76-158 (737)
155 KOG1188 WD40 repeat protein [G 99.0 6.1E-09 1.3E-13 100.4 14.3 134 4-137 41-198 (376)
156 KOG1034 Transcriptional repres 99.0 1E-08 2.2E-13 98.4 14.6 93 4-98 149-278 (385)
157 KOG1063 RNA polymerase II elon 99.0 3.1E-09 6.7E-14 110.7 11.7 100 2-101 536-650 (764)
158 KOG4328 WD40 protein [Function 99.0 9.8E-09 2.1E-13 102.4 14.7 96 4-99 292-399 (498)
159 KOG0303 Actin-binding protein 99.0 1E-08 2.2E-13 100.6 14.3 98 4-102 145-252 (472)
160 KOG0974 WD-repeat protein WDR6 99.0 1.1E-09 2.3E-14 119.0 8.4 100 1-101 185-290 (967)
161 KOG1007 WD repeat protein TSSC 99.0 8.6E-09 1.9E-13 97.2 13.0 204 3-223 135-360 (370)
162 KOG1310 WD40 repeat protein [G 99.0 1.5E-09 3.3E-14 110.0 8.5 113 25-137 43-180 (758)
163 KOG1445 Tumor-specific antigen 99.0 1.1E-08 2.4E-13 105.4 14.3 111 2-114 91-214 (1012)
164 KOG1539 WD repeat protein [Gen 99.0 5.1E-08 1.1E-12 103.8 19.5 189 4-230 173-371 (910)
165 KOG1063 RNA polymerase II elon 98.9 1.4E-08 3.1E-13 105.8 15.0 186 3-223 158-390 (764)
166 KOG1524 WD40 repeat-containing 98.9 6E-09 1.3E-13 105.6 11.8 158 2-162 115-282 (737)
167 KOG4227 WD40 repeat protein [G 98.9 4.4E-08 9.6E-13 95.8 16.7 136 2-137 67-227 (609)
168 KOG1408 WD40 repeat protein [F 98.9 8.7E-09 1.9E-13 107.5 12.4 150 4-153 517-690 (1080)
169 KOG2106 Uncharacterized conser 98.9 1.5E-07 3.2E-12 95.2 20.2 221 2-224 212-477 (626)
170 KOG0650 WD40 repeat nucleolar 98.9 5.3E-08 1.1E-12 100.1 17.2 189 23-227 391-598 (733)
171 KOG0771 Prolactin regulatory e 98.9 6.3E-09 1.4E-13 103.0 10.3 100 2-102 155-267 (398)
172 KOG1273 WD40 repeat protein [G 98.9 6.6E-08 1.4E-12 92.4 16.6 73 35-107 26-103 (405)
173 KOG0290 Conserved WD40 repeat- 98.9 3.6E-08 7.8E-13 93.2 14.7 167 2-173 162-352 (364)
174 KOG1539 WD repeat protein [Gen 98.9 2.3E-08 5.1E-13 106.3 14.6 163 3-167 460-648 (910)
175 KOG2055 WD40 repeat protein [G 98.9 4.4E-08 9.6E-13 97.9 15.6 195 32-242 213-435 (514)
176 KOG1188 WD40 repeat protein [G 98.9 3.3E-08 7.1E-13 95.5 14.2 133 3-137 84-244 (376)
177 KOG2055 WD40 repeat protein [G 98.9 5.5E-08 1.2E-12 97.2 15.6 207 4-223 226-511 (514)
178 KOG2919 Guanine nucleotide-bin 98.8 9.7E-08 2.1E-12 91.6 15.6 211 2-224 60-327 (406)
179 KOG4378 Nuclear protein COP1 [ 98.8 1.4E-08 3E-13 102.1 10.2 117 5-122 179-302 (673)
180 KOG2110 Uncharacterized conser 98.8 2.6E-08 5.6E-13 97.1 11.8 91 12-102 152-251 (391)
181 KOG0974 WD-repeat protein WDR6 98.8 1.7E-08 3.6E-13 110.0 11.5 128 5-137 147-290 (967)
182 PF08662 eIF2A: Eukaryotic tra 98.8 7.5E-08 1.6E-12 90.3 14.0 96 2-100 70-180 (194)
183 KOG2394 WD40 protein DMR-N9 [G 98.8 9.8E-09 2.1E-13 104.2 7.4 79 2-80 301-384 (636)
184 COG2319 FOG: WD40 repeat [Gene 98.8 4.7E-07 1E-11 93.4 20.0 133 5-138 125-274 (466)
185 PRK01742 tolB translocation pr 98.8 1.9E-07 4.1E-12 99.1 17.0 191 12-223 183-400 (429)
186 KOG2111 Uncharacterized conser 98.8 3.7E-07 8E-12 87.6 16.6 92 11-102 157-259 (346)
187 KOG0322 G-protein beta subunit 98.8 2.3E-08 5E-13 93.3 8.3 129 5-134 167-322 (323)
188 KOG0644 Uncharacterized conser 98.8 1.5E-08 3.2E-13 107.6 7.4 167 4-173 245-432 (1113)
189 KOG2394 WD40 protein DMR-N9 [G 98.7 9.7E-08 2.1E-12 97.2 12.7 117 3-121 232-382 (636)
190 KOG0290 Conserved WD40 repeat- 98.7 1.6E-07 3.5E-12 88.9 13.1 162 4-168 114-319 (364)
191 KOG1523 Actin-related protein 98.7 3.7E-07 7.9E-12 87.6 15.2 194 2-222 21-234 (361)
192 KOG1310 WD40 repeat protein [G 98.7 4.4E-08 9.6E-13 99.7 8.6 101 2-102 61-181 (758)
193 KOG1240 Protein kinase contain 98.7 3.6E-07 7.9E-12 101.1 15.9 151 18-169 1034-1227(1431)
194 KOG4328 WD40 protein [Function 98.7 1.7E-07 3.7E-12 93.7 12.2 99 4-102 201-312 (498)
195 KOG0307 Vesicle coat complex C 98.7 8.2E-08 1.8E-12 105.7 10.7 198 10-223 36-283 (1049)
196 KOG1517 Guanine nucleotide bin 98.7 2.3E-07 4.9E-12 101.2 13.8 101 2-102 1122-1242(1387)
197 KOG0650 WD40 repeat nucleolar 98.7 4.1E-07 8.8E-12 93.8 14.8 100 2-102 411-557 (733)
198 KOG0642 Cell-cycle nuclear pro 98.7 1.4E-07 3.1E-12 96.6 11.2 58 2-59 355-424 (577)
199 PF00400 WD40: WD domain, G-be 98.7 6.9E-08 1.5E-12 65.0 6.0 38 22-59 1-39 (39)
200 KOG1009 Chromatin assembly com 98.6 9.5E-08 2.1E-12 94.2 8.6 102 2-103 76-199 (434)
201 KOG2110 Uncharacterized conser 98.6 1.9E-06 4.2E-11 84.3 15.7 102 2-104 96-209 (391)
202 KOG1272 WD40-repeat-containing 98.5 1.1E-07 2.4E-12 95.2 6.2 100 5-104 223-328 (545)
203 KOG2919 Guanine nucleotide-bin 98.5 1.3E-06 2.8E-11 84.0 12.7 100 2-102 169-284 (406)
204 KOG1538 Uncharacterized conser 98.5 3.5E-07 7.6E-12 95.1 9.3 177 34-230 14-217 (1081)
205 KOG0771 Prolactin regulatory e 98.5 3.6E-07 7.7E-12 90.7 8.7 66 36-102 148-218 (398)
206 KOG1240 Protein kinase contain 98.5 6.7E-06 1.5E-10 91.5 18.9 217 3-224 1061-1334(1431)
207 COG2319 FOG: WD40 repeat [Gene 98.5 1.5E-05 3.2E-10 82.2 20.8 101 2-102 76-189 (466)
208 KOG1517 Guanine nucleotide bin 98.4 1.6E-06 3.4E-11 94.9 12.4 146 2-157 1220-1382(1387)
209 PRK11028 6-phosphogluconolacto 98.4 3.3E-05 7.3E-10 79.0 21.9 210 5-223 4-257 (330)
210 PF08662 eIF2A: Eukaryotic tra 98.4 9.9E-06 2.2E-10 76.0 16.4 87 15-102 39-136 (194)
211 KOG4227 WD40 repeat protein [G 98.4 2.9E-06 6.3E-11 83.3 12.9 80 25-104 49-140 (609)
212 KOG3914 WD repeat protein WDR4 98.4 5.3E-07 1.1E-11 89.1 7.0 104 9-113 128-237 (390)
213 KOG1334 WD40 repeat protein [G 98.4 2.7E-06 5.9E-11 85.9 11.7 220 2-225 153-425 (559)
214 KOG2139 WD40 repeat protein [G 98.4 9.8E-06 2.1E-10 79.2 14.8 98 6-104 113-231 (445)
215 KOG2321 WD40 repeat protein [G 98.4 5.5E-06 1.2E-10 85.3 13.2 98 6-103 148-262 (703)
216 KOG1272 WD40-repeat-containing 98.3 9.9E-07 2.1E-11 88.5 7.5 92 5-97 265-360 (545)
217 PRK05137 tolB translocation pr 98.3 0.00013 2.8E-09 77.8 23.4 90 14-103 183-282 (435)
218 KOG1587 Cytoplasmic dynein int 98.3 1.6E-05 3.4E-10 85.2 16.0 211 2-226 254-518 (555)
219 KOG2139 WD40 repeat protein [G 98.3 1.6E-05 3.4E-10 77.8 14.4 133 3-162 153-306 (445)
220 PF00400 WD40: WD domain, G-be 98.3 1.7E-06 3.7E-11 58.1 5.7 37 61-97 1-39 (39)
221 PRK11028 6-phosphogluconolacto 98.3 0.00026 5.5E-09 72.4 24.5 99 2-101 45-158 (330)
222 KOG0322 G-protein beta subunit 98.3 7.2E-07 1.6E-11 83.5 4.2 58 2-59 262-321 (323)
223 PF02239 Cytochrom_D1: Cytochr 98.2 0.00014 3E-09 75.3 21.1 167 4-170 6-205 (369)
224 PRK01742 tolB translocation pr 98.2 6.5E-05 1.4E-09 79.8 18.5 96 2-100 214-323 (429)
225 KOG1963 WD40 repeat protein [G 98.2 4.4E-05 9.6E-10 82.5 16.9 66 2-68 27-99 (792)
226 KOG1587 Cytoplasmic dynein int 98.2 7.8E-06 1.7E-10 87.5 11.2 100 3-103 360-476 (555)
227 PRK03629 tolB translocation pr 98.2 8.3E-05 1.8E-09 78.9 18.6 100 2-102 209-322 (429)
228 PRK02889 tolB translocation pr 98.2 8.9E-05 1.9E-09 78.7 18.7 97 2-99 206-314 (427)
229 KOG3881 Uncharacterized conser 98.2 3.8E-05 8.3E-10 75.9 13.8 199 3-246 115-338 (412)
230 KOG4190 Uncharacterized conser 98.2 8.5E-06 1.8E-10 83.3 9.4 100 3-104 747-864 (1034)
231 PRK04922 tolB translocation pr 98.1 0.0001 2.2E-09 78.5 18.1 90 13-103 184-284 (433)
232 PRK05137 tolB translocation pr 98.1 0.00036 7.8E-09 74.3 21.2 100 2-102 212-325 (435)
233 KOG2111 Uncharacterized conser 98.1 8.7E-05 1.9E-09 71.6 14.1 59 1-59 191-254 (346)
234 KOG3881 Uncharacterized conser 98.1 2.3E-05 4.9E-10 77.4 10.1 100 3-102 216-323 (412)
235 PRK04922 tolB translocation pr 98.1 0.00037 8E-09 74.2 20.1 100 2-102 214-327 (433)
236 TIGR02800 propeller_TolB tol-p 98.1 0.00027 5.9E-09 74.7 19.0 100 2-102 200-313 (417)
237 PRK02889 tolB translocation pr 98.0 0.00024 5.2E-09 75.4 17.5 86 13-99 176-270 (427)
238 PRK03629 tolB translocation pr 98.0 0.00061 1.3E-08 72.3 20.1 89 14-102 180-278 (429)
239 TIGR02800 propeller_TolB tol-p 98.0 0.00092 2E-08 70.6 20.9 89 14-102 171-269 (417)
240 KOG0309 Conserved WD40 repeat- 97.9 4.6E-05 1E-09 80.7 10.0 213 4-227 83-342 (1081)
241 KOG0280 Uncharacterized conser 97.9 7.1E-05 1.5E-09 71.5 10.3 98 3-100 133-242 (339)
242 KOG1523 Actin-related protein 97.9 0.00021 4.6E-09 69.1 13.3 86 27-112 5-99 (361)
243 KOG1064 RAVE (regulator of V-A 97.8 4.5E-05 9.7E-10 88.0 7.7 132 3-140 2263-2403(2439)
244 KOG1354 Serine/threonine prote 97.8 0.00027 5.9E-09 68.9 11.8 99 2-100 36-194 (433)
245 KOG2066 Vacuolar assembly/sort 97.7 0.00059 1.3E-08 73.6 14.5 159 2-168 48-227 (846)
246 PF13360 PQQ_2: PQQ-like domai 97.7 0.0076 1.6E-07 58.1 21.3 196 11-210 1-236 (238)
247 KOG4547 WD40 repeat-containing 97.7 0.00021 4.6E-09 74.3 10.3 95 4-100 115-221 (541)
248 PF14783 BBS2_Mid: Ciliary BBS 97.7 0.0013 2.8E-08 54.6 12.8 66 35-100 2-72 (111)
249 KOG4497 Uncharacterized conser 97.7 0.00046 9.9E-09 67.0 11.7 83 5-87 63-150 (447)
250 PRK00178 tolB translocation pr 97.7 0.0089 1.9E-07 63.5 23.1 90 14-103 180-279 (430)
251 KOG4714 Nucleoporin [Nuclear s 97.7 0.00018 4E-09 67.6 8.6 67 34-100 181-255 (319)
252 KOG4190 Uncharacterized conser 97.7 7.9E-05 1.7E-09 76.4 6.5 77 25-103 728-816 (1034)
253 KOG1963 WD40 repeat protein [G 97.7 0.00034 7.3E-09 75.9 11.4 97 2-99 216-322 (792)
254 KOG1064 RAVE (regulator of V-A 97.7 0.00022 4.7E-09 82.7 10.3 163 4-170 2181-2369(2439)
255 PF11768 DUF3312: Protein of u 97.7 0.00031 6.7E-09 73.6 10.8 72 30-101 257-331 (545)
256 KOG0280 Uncharacterized conser 97.6 0.00016 3.4E-09 69.2 7.1 100 3-102 178-287 (339)
257 PRK04792 tolB translocation pr 97.6 0.0072 1.6E-07 64.5 20.8 89 14-102 199-297 (448)
258 KOG4547 WD40 repeat-containing 97.6 0.0012 2.5E-08 68.9 13.7 117 3-123 70-194 (541)
259 KOG2695 WD40 repeat protein [G 97.6 0.00023 5.1E-09 69.4 7.7 101 3-107 264-384 (425)
260 PLN02919 haloacid dehalogenase 97.5 0.013 2.8E-07 69.0 23.5 221 2-226 579-890 (1057)
261 PRK01029 tolB translocation pr 97.5 0.0034 7.5E-08 66.5 17.0 101 2-102 241-362 (428)
262 KOG2695 WD40 repeat protein [G 97.5 0.00027 5.8E-09 69.0 7.6 135 8-143 229-384 (425)
263 PRK04792 tolB translocation pr 97.5 0.0036 7.8E-08 66.8 17.0 100 2-102 228-341 (448)
264 TIGR03300 assembly_YfgL outer 97.5 0.016 3.5E-07 60.4 20.9 207 2-211 64-304 (377)
265 smart00320 WD40 WD40 repeats. 97.4 0.00038 8.2E-09 44.8 5.6 38 22-59 2-40 (40)
266 KOG3914 WD repeat protein WDR4 97.4 0.00018 3.9E-09 71.5 5.4 67 2-68 162-232 (390)
267 KOG4714 Nucleoporin [Nuclear s 97.4 0.00038 8.2E-09 65.6 7.1 63 3-65 192-259 (319)
268 PF14783 BBS2_Mid: Ciliary BBS 97.4 0.0059 1.3E-07 50.7 13.2 89 4-94 16-109 (111)
269 PRK00178 tolB translocation pr 97.4 0.0053 1.1E-07 65.3 16.8 100 2-102 209-322 (430)
270 KOG2066 Vacuolar assembly/sort 97.4 0.0047 1E-07 66.8 15.6 99 2-104 82-192 (846)
271 KOG1334 WD40 repeat protein [G 97.4 0.00029 6.3E-09 71.6 6.2 112 24-135 134-263 (559)
272 TIGR03300 assembly_YfgL outer 97.4 0.054 1.2E-06 56.4 23.3 210 2-214 104-348 (377)
273 KOG2321 WD40 repeat protein [G 97.4 0.0019 4.1E-08 67.2 11.7 100 4-103 188-306 (703)
274 PF02239 Cytochrom_D1: Cytochr 97.3 0.023 5.1E-07 58.8 19.9 139 2-141 47-208 (369)
275 KOG1354 Serine/threonine prote 97.3 0.001 2.2E-08 65.1 8.5 100 3-102 98-247 (433)
276 KOG4497 Uncharacterized conser 97.2 0.00042 9.2E-09 67.2 5.0 100 2-103 19-126 (447)
277 KOG1409 Uncharacterized conser 97.2 0.0015 3.3E-08 63.9 8.6 83 22-104 187-275 (404)
278 COG4946 Uncharacterized protei 97.2 0.066 1.4E-06 54.9 20.2 99 1-102 330-434 (668)
279 KOG4532 WD40-like repeat conta 97.2 0.016 3.5E-07 55.1 14.8 97 5-102 130-236 (344)
280 KOG2041 WD40 repeat protein [G 97.1 0.001 2.2E-08 70.6 7.0 100 3-102 26-148 (1189)
281 PLN02919 haloacid dehalogenase 97.1 0.015 3.2E-07 68.5 17.4 100 3-103 695-837 (1057)
282 KOG1645 RING-finger-containing 97.1 0.0013 2.9E-08 65.6 7.0 88 15-102 175-269 (463)
283 PF10282 Lactonase: Lactonase, 97.0 0.24 5.2E-06 50.9 23.6 98 2-99 97-222 (345)
284 PF13360 PQQ_2: PQQ-like domai 96.9 0.049 1.1E-06 52.4 16.8 103 2-105 35-146 (238)
285 smart00320 WD40 WD40 repeats. 96.9 0.0025 5.3E-08 40.8 5.2 37 61-97 2-40 (40)
286 KOG0309 Conserved WD40 repeat- 96.9 0.00082 1.8E-08 71.6 4.2 77 7-83 174-258 (1081)
287 KOG4532 WD40-like repeat conta 96.8 0.023 5E-07 54.1 12.4 101 2-102 169-285 (344)
288 PRK01029 tolB translocation pr 96.8 0.016 3.6E-07 61.4 12.7 101 2-102 291-406 (428)
289 COG5170 CDC55 Serine/threonine 96.7 0.0057 1.2E-07 59.1 8.0 99 3-101 38-203 (460)
290 KOG2315 Predicted translation 96.7 0.051 1.1E-06 56.8 15.2 88 14-102 252-347 (566)
291 COG4946 Uncharacterized protei 96.7 0.043 9.2E-07 56.2 14.2 104 2-105 370-483 (668)
292 TIGR02658 TTQ_MADH_Hv methylam 96.5 0.79 1.7E-05 46.9 22.3 87 11-98 75-174 (352)
293 PF04762 IKI3: IKI3 family; I 96.3 0.23 5E-06 57.6 19.2 108 2-110 220-344 (928)
294 PF15492 Nbas_N: Neuroblastoma 96.3 0.84 1.8E-05 44.3 19.7 213 2-224 8-259 (282)
295 KOG2315 Predicted translation 96.3 0.053 1.2E-06 56.6 12.4 93 9-101 190-304 (566)
296 KOG2114 Vacuolar assembly/sort 96.3 0.69 1.5E-05 51.2 20.8 95 3-97 35-153 (933)
297 KOG1275 PAB-dependent poly(A) 96.2 0.036 7.7E-07 61.1 11.1 94 3-97 187-294 (1118)
298 KOG1409 Uncharacterized conser 96.2 0.12 2.6E-06 51.1 13.6 130 4-135 81-270 (404)
299 KOG2314 Translation initiation 96.1 0.084 1.8E-06 55.2 12.2 131 35-167 213-367 (698)
300 TIGR02658 TTQ_MADH_Hv methylam 96.1 0.35 7.7E-06 49.4 16.9 95 13-109 27-146 (352)
301 PF10282 Lactonase: Lactonase, 96.1 2.1 4.6E-05 43.9 25.1 101 2-102 47-177 (345)
302 PRK11138 outer membrane biogen 96.0 1.3 2.9E-05 46.4 21.9 208 3-213 120-362 (394)
303 PRK04043 tolB translocation pr 96.0 0.73 1.6E-05 48.7 19.7 100 2-102 198-312 (419)
304 KOG0882 Cyclophilin-related pe 96.0 0.013 2.7E-07 59.6 5.8 99 4-102 21-133 (558)
305 COG5170 CDC55 Serine/threonine 96.0 0.04 8.6E-07 53.5 8.8 74 29-102 169-255 (460)
306 PRK11138 outer membrane biogen 95.9 0.67 1.5E-05 48.6 19.1 101 3-104 69-183 (394)
307 COG5354 Uncharacterized protei 95.8 0.25 5.5E-06 51.2 14.1 88 14-102 256-351 (561)
308 KOG4640 Anaphase-promoting com 95.6 0.049 1.1E-06 57.8 8.6 74 32-105 20-98 (665)
309 PF11768 DUF3312: Protein of u 95.6 0.071 1.5E-06 56.4 9.6 56 3-59 271-327 (545)
310 PF04762 IKI3: IKI3 family; I 95.5 3.6 7.7E-05 48.0 24.2 54 3-59 87-148 (928)
311 KOG1275 PAB-dependent poly(A) 95.4 0.37 8E-06 53.5 14.6 99 2-104 146-259 (1118)
312 PF15492 Nbas_N: Neuroblastoma 95.2 3.1 6.6E-05 40.5 18.7 90 2-91 54-170 (282)
313 PF07433 DUF1513: Protein of u 95.2 1.5 3.2E-05 43.6 17.0 157 2-177 61-257 (305)
314 PRK04043 tolB translocation pr 95.0 2.1 4.6E-05 45.2 19.0 88 14-102 170-268 (419)
315 KOG3617 WD40 and TPR repeat-co 95.0 0.062 1.3E-06 58.8 7.1 88 12-100 40-132 (1416)
316 KOG3621 WD40 repeat-containing 94.9 0.1 2.2E-06 56.1 8.4 99 2-100 44-155 (726)
317 KOG1912 WD40 repeat protein [G 94.8 0.17 3.7E-06 55.0 9.9 101 2-103 25-147 (1062)
318 KOG1920 IkappaB kinase complex 94.7 0.28 6.1E-06 56.0 11.6 109 2-110 206-333 (1265)
319 PF08450 SGL: SMP-30/Gluconola 94.5 4.9 0.00011 38.9 20.8 98 3-101 51-166 (246)
320 COG2706 3-carboxymuconate cycl 94.4 6.2 0.00013 39.6 20.3 100 3-102 51-178 (346)
321 KOG2444 WD40 repeat protein [G 94.3 0.12 2.6E-06 48.4 6.6 93 3-102 70-169 (238)
322 PF08553 VID27: VID27 cytoplas 94.1 0.47 1E-05 53.4 11.7 96 3-98 542-646 (794)
323 COG5354 Uncharacterized protei 94.0 1.9 4.2E-05 45.0 15.0 93 9-101 198-308 (561)
324 KOG2079 Vacuolar assembly/sort 93.7 0.21 4.7E-06 56.3 8.0 93 4-98 100-202 (1206)
325 KOG4640 Anaphase-promoting com 93.6 0.2 4.3E-06 53.4 7.3 76 4-79 33-114 (665)
326 PF08553 VID27: VID27 cytoplas 93.5 1.5 3.3E-05 49.4 14.3 93 7-99 498-606 (794)
327 PF12894 Apc4_WD40: Anaphase-p 93.2 0.27 5.8E-06 34.2 5.1 31 69-99 10-41 (47)
328 KOG1832 HIV-1 Vpr-binding prot 92.8 0.098 2.1E-06 57.6 3.7 100 2-104 1112-1219(1516)
329 KOG0882 Cyclophilin-related pe 92.5 0.45 9.7E-06 48.8 7.7 73 30-102 7-87 (558)
330 PF08450 SGL: SMP-30/Gluconola 92.4 8.2 0.00018 37.3 16.6 99 2-102 96-215 (246)
331 COG2706 3-carboxymuconate cycl 91.9 15 0.00033 36.9 21.1 99 2-101 99-223 (346)
332 KOG2395 Protein involved in va 91.8 1.5 3.3E-05 46.1 10.6 93 7-99 398-500 (644)
333 KOG2114 Vacuolar assembly/sort 91.7 14 0.00029 41.5 18.1 98 4-102 78-203 (933)
334 KOG2041 WD40 repeat protein [G 91.6 0.76 1.6E-05 49.7 8.4 72 33-104 15-106 (1189)
335 PF12894 Apc4_WD40: Anaphase-p 91.4 0.5 1.1E-05 32.9 4.7 33 32-64 11-45 (47)
336 PF12234 Rav1p_C: RAVE protein 91.2 2.5 5.4E-05 46.5 12.2 89 10-99 48-156 (631)
337 KOG2395 Protein involved in va 90.7 1.6 3.4E-05 46.0 9.4 108 6-116 349-474 (644)
338 KOG1912 WD40 repeat protein [G 90.5 1.3 2.8E-05 48.5 9.0 94 5-98 81-185 (1062)
339 KOG1832 HIV-1 Vpr-binding prot 90.3 0.33 7.2E-06 53.7 4.5 120 22-142 1091-1221(1516)
340 cd00020 ARM Armadillo/beta-cat 90.1 1.2 2.6E-05 37.2 7.1 98 419-520 21-119 (120)
341 PF04826 Arm_2: Armadillo-like 89.5 2.9 6.4E-05 40.8 10.0 110 406-521 96-205 (254)
342 cd00216 PQQ_DH Dehydrogenases 89.0 29 0.00062 37.5 18.3 102 3-104 61-188 (488)
343 TIGR03074 PQQ_membr_DH membran 88.9 36 0.00079 38.9 19.5 101 3-103 194-348 (764)
344 PF04053 Coatomer_WDAD: Coatom 88.4 13 0.00027 39.6 14.6 66 37-105 73-140 (443)
345 COG3490 Uncharacterized protei 88.2 16 0.00036 35.7 13.6 88 2-89 124-244 (366)
346 PF03178 CPSF_A: CPSF A subuni 88.0 4.7 0.0001 40.9 10.9 94 5-100 100-203 (321)
347 KOG2314 Translation initiation 87.6 14 0.00031 39.3 13.7 95 3-100 222-335 (698)
348 PF04841 Vps16_N: Vps16, N-ter 87.4 41 0.0009 35.4 18.1 50 14-63 62-112 (410)
349 COG0823 TolB Periplasmic compo 86.6 16 0.00034 38.7 14.0 82 21-102 181-273 (425)
350 PF05096 Glu_cyclase_2: Glutam 86.0 36 0.00078 33.3 17.1 102 2-105 55-163 (264)
351 cd00020 ARM Armadillo/beta-cat 85.9 6.6 0.00014 32.5 9.1 99 452-553 11-111 (120)
352 cd00216 PQQ_DH Dehydrogenases 85.7 57 0.0012 35.3 21.6 101 4-104 111-269 (488)
353 KOG1645 RING-finger-containing 85.4 2 4.4E-05 43.6 6.2 75 5-80 208-291 (463)
354 KOG1920 IkappaB kinase complex 84.6 54 0.0012 38.5 17.4 58 2-59 79-137 (1265)
355 PRK02888 nitrous-oxide reducta 84.5 8.2 0.00018 42.3 10.7 51 52-102 295-354 (635)
356 KOG4460 Nuclear pore complex, 84.2 12 0.00026 39.6 11.3 68 35-102 106-201 (741)
357 KOG3621 WD40 repeat-containing 83.6 8.5 0.00018 42.1 10.2 95 8-102 3-109 (726)
358 PHA02713 hypothetical protein; 83.3 23 0.0005 39.0 14.0 17 161-177 482-499 (557)
359 COG0823 TolB Periplasmic compo 82.9 5.5 0.00012 42.1 8.7 100 2-101 248-360 (425)
360 PF04841 Vps16_N: Vps16, N-ter 82.8 7.6 0.00017 40.9 9.7 48 54-101 62-111 (410)
361 KOG2079 Vacuolar assembly/sort 82.8 6 0.00013 45.3 9.0 61 45-105 101-166 (1206)
362 PRK02888 nitrous-oxide reducta 82.4 13 0.00028 40.8 11.2 96 2-100 287-405 (635)
363 PF04053 Coatomer_WDAD: Coatom 82.3 8.6 0.00019 40.9 9.8 93 3-101 79-175 (443)
364 KOG3617 WD40 and TPR repeat-co 81.8 16 0.00035 40.9 11.5 77 6-82 74-161 (1416)
365 PF08596 Lgl_C: Lethal giant l 81.7 41 0.00089 35.2 14.5 43 69-111 85-127 (395)
366 KOG1008 Uncharacterized conser 81.6 0.4 8.7E-06 51.2 -0.4 96 4-100 167-276 (783)
367 PF07433 DUF1513: Protein of u 79.9 34 0.00075 34.2 12.4 96 14-109 139-257 (305)
368 PF14761 HPS3_N: Hermansky-Pud 79.6 30 0.00064 32.6 11.1 97 4-102 29-166 (215)
369 KOG4649 PQQ (pyrrolo-quinoline 79.3 64 0.0014 31.4 13.5 17 84-100 108-124 (354)
370 KOG2444 WD40 repeat protein [G 79.2 3.5 7.5E-05 38.9 4.9 30 3-32 114-144 (238)
371 PF12234 Rav1p_C: RAVE protein 79.2 53 0.0011 36.5 14.6 65 35-99 32-104 (631)
372 KOG2280 Vacuolar assembly/sort 78.3 43 0.00094 37.2 13.3 86 14-99 65-156 (829)
373 PF10313 DUF2415: Uncharacteri 78.2 6.6 0.00014 26.7 4.7 31 71-101 1-35 (43)
374 PF14870 PSII_BNR: Photosynthe 77.0 31 0.00067 34.6 11.3 100 2-102 155-263 (302)
375 PHA02713 hypothetical protein; 77.0 19 0.00042 39.6 10.9 28 147-174 512-540 (557)
376 PF07569 Hira: TUP1-like enhan 76.2 16 0.00034 34.8 8.7 82 80-175 20-103 (219)
377 PHA03098 kelch-like protein; P 75.7 24 0.00053 38.5 11.3 16 161-176 458-473 (534)
378 PHA03098 kelch-like protein; P 75.5 44 0.00096 36.5 13.3 17 160-176 504-520 (534)
379 PF05804 KAP: Kinesin-associat 74.9 30 0.00066 39.0 11.6 114 419-540 345-461 (708)
380 KOG1916 Nuclear protein, conta 74.0 2.5 5.5E-05 47.2 2.9 55 5-59 197-263 (1283)
381 KOG4199 Uncharacterized conser 73.1 1.1E+02 0.0024 31.0 13.9 132 420-561 162-312 (461)
382 KOG4649 PQQ (pyrrolo-quinoline 72.2 56 0.0012 31.7 10.9 58 82-139 63-127 (354)
383 PF10168 Nup88: Nuclear pore c 72.1 46 0.00099 37.8 12.3 69 34-102 86-182 (717)
384 PLN00033 photosystem II stabil 72.1 1.1E+02 0.0024 32.1 14.4 66 32-97 280-354 (398)
385 PF07569 Hira: TUP1-like enhan 71.6 19 0.00042 34.3 8.0 59 43-102 21-98 (219)
386 PF15390 DUF4613: Domain of un 71.6 44 0.00094 36.3 11.1 115 30-169 54-188 (671)
387 KOG4441 Proteins containing BT 70.9 55 0.0012 36.2 12.5 99 3-103 285-408 (571)
388 KOG4441 Proteins containing BT 70.5 51 0.0011 36.4 12.1 103 1-104 379-504 (571)
389 PF00780 CNH: CNH domain; Int 70.3 1.1E+02 0.0024 29.8 15.8 57 45-102 9-67 (275)
390 PF05804 KAP: Kinesin-associat 70.1 31 0.00067 38.9 10.3 103 421-528 265-367 (708)
391 KOG1916 Nuclear protein, conta 69.9 7.1 0.00015 43.9 5.1 86 13-98 153-264 (1283)
392 PF08596 Lgl_C: Lethal giant l 69.5 45 0.00098 34.9 10.9 72 28-99 82-173 (395)
393 KOG4499 Ca2+-binding protein R 69.4 22 0.00048 33.9 7.5 51 2-52 222-276 (310)
394 PF04826 Arm_2: Armadillo-like 68.9 74 0.0016 31.1 11.6 99 418-523 67-165 (254)
395 PF10165 Ric8: Guanine nucleot 68.6 22 0.00048 37.9 8.6 74 377-455 1-85 (446)
396 PF14870 PSII_BNR: Photosynthe 67.5 1.2E+02 0.0026 30.4 13.0 69 29-97 141-213 (302)
397 TIGR03075 PQQ_enz_alc_DH PQQ-d 67.3 53 0.0011 35.9 11.3 101 3-104 69-194 (527)
398 PLN00033 photosystem II stabil 67.1 1E+02 0.0022 32.3 12.9 63 34-96 329-396 (398)
399 KOG4500 Rho/Rac GTPase guanine 66.3 68 0.0015 33.5 10.8 112 420-531 102-221 (604)
400 PF03224 V-ATPase_H_N: V-ATPas 65.8 99 0.0022 31.1 12.4 137 386-525 87-231 (312)
401 COG3386 Gluconolactonase [Carb 65.5 1.1E+02 0.0024 30.8 12.4 87 15-102 145-245 (307)
402 PF08728 CRT10: CRT10; InterP 65.3 62 0.0013 36.4 11.2 95 3-98 114-245 (717)
403 PF05935 Arylsulfotrans: Aryls 65.3 1.7E+02 0.0038 31.4 14.7 77 11-88 126-208 (477)
404 PF10508 Proteasom_PSMB: Prote 65.1 2.1E+02 0.0046 31.1 19.5 109 418-531 90-200 (503)
405 PF03178 CPSF_A: CPSF A subuni 64.6 1.6E+02 0.0035 29.6 16.7 87 14-102 3-118 (321)
406 PF06977 SdiA-regulated: SdiA- 63.5 1.5E+02 0.0033 28.8 12.5 98 3-100 34-148 (248)
407 KOG3616 Selective LIM binding 63.4 9.4 0.0002 42.0 4.4 91 3-97 26-124 (1636)
408 PRK13684 Ycf48-like protein; P 63.3 80 0.0017 32.2 11.2 97 5-102 185-290 (334)
409 PHA02790 Kelch-like protein; P 63.2 1.8E+02 0.0039 31.4 14.4 99 2-103 271-388 (480)
410 KOG1008 Uncharacterized conser 62.7 3.1 6.8E-05 44.8 0.8 88 11-98 127-224 (783)
411 PF06977 SdiA-regulated: SdiA- 62.6 69 0.0015 31.2 9.9 75 26-100 15-95 (248)
412 PRK13616 lipoprotein LpqB; Pro 62.1 49 0.0011 36.7 9.9 91 2-95 360-472 (591)
413 KOG3630 Nuclear pore complex, 62.1 10 0.00022 43.9 4.5 96 5-100 116-229 (1405)
414 PHA02790 Kelch-like protein; P 59.1 2E+02 0.0043 31.0 13.9 98 2-104 318-428 (480)
415 PF10647 Gmad1: Lipoprotein Lp 58.7 1.4E+02 0.0029 29.1 11.5 95 2-98 34-143 (253)
416 KOG0166 Karyopherin (importin) 58.6 99 0.0021 33.3 10.9 114 424-540 214-328 (514)
417 PLN03200 cellulose synthase-in 58.1 94 0.002 39.5 12.0 128 419-551 623-753 (2102)
418 PF13513 HEAT_EZ: HEAT-like re 56.9 47 0.001 23.3 6.0 52 421-474 3-54 (55)
419 KOG2280 Vacuolar assembly/sort 56.5 1.4E+02 0.0031 33.4 11.8 42 3-44 94-139 (829)
420 PF00780 CNH: CNH domain; Int 56.5 2E+02 0.0043 27.9 17.5 97 2-101 6-124 (275)
421 PF11715 Nup160: Nucleoporin N 56.3 43 0.00092 36.8 8.3 22 84-105 233-254 (547)
422 PF10508 Proteasom_PSMB: Prote 56.0 1.6E+02 0.0035 32.0 12.5 151 362-521 204-366 (503)
423 PF00930 DPPIV_N: Dipeptidyl p 54.5 23 0.00051 36.4 5.6 86 12-98 22-130 (353)
424 PF06433 Me-amine-dh_H: Methyl 53.9 28 0.00061 35.3 5.7 50 55-104 271-325 (342)
425 PF13570 PQQ_3: PQQ-like domai 53.7 30 0.00065 22.6 4.2 20 81-100 21-40 (40)
426 PF15390 DUF4613: Domain of un 53.7 75 0.0016 34.5 9.0 96 5-101 74-188 (671)
427 PRK13684 Ycf48-like protein; P 51.1 1.8E+02 0.0038 29.7 11.3 71 32-102 172-246 (334)
428 PF12755 Vac14_Fab1_bd: Vacuol 50.6 1.4E+02 0.003 24.4 9.1 52 423-479 7-58 (97)
429 KOG3630 Nuclear pore complex, 49.5 29 0.00062 40.4 5.4 77 6-83 171-256 (1405)
430 PF07676 PD40: WD40-like Beta 49.3 69 0.0015 20.6 5.7 12 33-44 9-20 (39)
431 PF05004 IFRD: Interferon-rela 48.6 1.1E+02 0.0025 30.7 9.3 102 419-521 57-160 (309)
432 PF02897 Peptidase_S9_N: Proly 47.9 3.4E+02 0.0075 28.2 18.0 99 2-101 134-262 (414)
433 KOG0213 Splicing factor 3b, su 47.5 4.7E+02 0.01 29.7 16.3 97 420-518 755-867 (1172)
434 COG1520 FOG: WD40-like repeat 45.9 2.1E+02 0.0046 29.4 11.2 98 5-102 70-174 (370)
435 PF06433 Me-amine-dh_H: Methyl 45.7 61 0.0013 32.9 6.6 53 15-68 271-329 (342)
436 PLN03200 cellulose synthase-in 43.8 2.1E+02 0.0046 36.6 11.9 71 449-521 610-680 (2102)
437 PF11715 Nup160: Nucleoporin N 43.7 31 0.00067 37.8 4.8 29 3-31 230-259 (547)
438 COG5167 VID27 Protein involved 43.0 36 0.00078 36.1 4.6 55 44-99 574-632 (776)
439 COG3386 Gluconolactonase [Carb 41.3 2.7E+02 0.0059 28.0 10.6 95 4-100 78-194 (307)
440 PF03224 V-ATPase_H_N: V-ATPas 40.4 2.5E+02 0.0053 28.2 10.4 99 421-521 166-269 (312)
441 PF02897 Peptidase_S9_N: Proly 40.1 4.5E+02 0.0097 27.3 15.8 67 35-102 126-213 (414)
442 smart00564 PQQ beta-propeller 39.8 51 0.0011 20.2 3.5 24 4-27 7-31 (33)
443 PF05694 SBP56: 56kDa selenium 39.1 2.6E+02 0.0056 29.6 10.1 92 11-102 220-345 (461)
444 TIGR02276 beta_rpt_yvtn 40-res 39.0 1E+02 0.0023 19.8 5.2 8 52-59 13-20 (42)
445 cd00183 TFIIS_I N-terminal dom 39.0 1.8E+02 0.0039 22.4 7.0 51 505-558 19-69 (76)
446 PF00930 DPPIV_N: Dipeptidyl p 38.9 2.3E+02 0.005 29.0 10.1 80 4-83 249-340 (353)
447 PF08728 CRT10: CRT10; InterP 37.9 1.3E+02 0.0028 34.0 8.1 56 45-100 116-196 (717)
448 PF14779 BBS1: Ciliary BBSome 37.7 2E+02 0.0044 28.0 8.6 66 31-96 175-255 (257)
449 COG3490 Uncharacterized protei 36.9 4.4E+02 0.0095 26.3 11.2 46 39-84 120-175 (366)
450 PF01436 NHL: NHL repeat; Int 36.4 78 0.0017 19.0 3.7 10 74-83 5-14 (28)
451 PRK13616 lipoprotein LpqB; Pro 36.1 5E+02 0.011 28.8 12.6 59 30-89 347-416 (591)
452 PF04063 DUF383: Domain of unk 35.1 95 0.0021 28.9 5.8 100 420-519 73-177 (192)
453 PF05935 Arylsulfotrans: Aryls 35.0 6E+02 0.013 27.3 13.5 96 5-102 160-304 (477)
454 PF01602 Adaptin_N: Adaptin N 34.7 2.1E+02 0.0045 30.9 9.5 89 417-519 91-179 (526)
455 PF14655 RAB3GAP2_N: Rab3 GTPa 34.0 3.6E+02 0.0079 28.4 10.5 43 26-68 301-346 (415)
456 COG5167 VID27 Protein involved 33.7 3.2E+02 0.0069 29.5 9.6 31 70-100 562-592 (776)
457 PF12768 Rax2: Cortical protei 33.3 4.9E+02 0.011 25.8 12.9 90 13-102 16-126 (281)
458 KOG3616 Selective LIM binding 32.3 91 0.002 34.8 5.7 66 32-100 14-84 (1636)
459 TIGR03075 PQQ_enz_alc_DH PQQ-d 32.2 2.1E+02 0.0046 31.2 8.9 59 13-71 441-502 (527)
460 PF12657 TFIIIC_delta: Transcr 31.8 1.8E+02 0.0039 26.3 7.1 29 72-100 87-122 (173)
461 PF13646 HEAT_2: HEAT repeats; 30.9 2.4E+02 0.0053 21.5 8.2 47 417-475 12-58 (88)
462 PF12755 Vac14_Fab1_bd: Vacuol 30.8 2.9E+02 0.0063 22.4 8.9 65 490-561 27-96 (97)
463 cd00256 VATPase_H VATPase_H, r 29.9 7E+02 0.015 26.5 14.1 98 420-521 159-258 (429)
464 KOG3522 Predicted guanine nucl 29.1 1.7E+02 0.0038 33.2 7.3 69 32-102 626-700 (925)
465 KOG2171 Karyopherin (importin) 29.0 1E+03 0.023 28.3 16.1 77 444-521 427-504 (1075)
466 KOG4535 HEAT and armadillo rep 29.0 1.5E+02 0.0032 31.5 6.4 55 418-472 120-174 (728)
467 COG3204 Uncharacterized protei 28.7 2.4E+02 0.0052 28.1 7.5 75 28-102 81-161 (316)
468 PF02985 HEAT: HEAT repeat; I 28.5 1E+02 0.0023 18.8 3.4 27 450-476 2-28 (31)
469 TIGR02604 Piru_Ver_Nterm putat 28.0 3.7E+02 0.008 27.6 9.5 55 33-87 124-200 (367)
470 KOG2377 Uncharacterized conser 28.0 6.3E+02 0.014 26.9 10.6 33 69-101 65-98 (657)
471 PF14781 BBS2_N: Ciliary BBSom 27.8 4.1E+02 0.0089 23.2 12.1 64 39-102 5-84 (136)
472 PF13251 DUF4042: Domain of un 27.2 1.6E+02 0.0036 27.1 5.9 55 418-472 115-169 (182)
473 COG1520 FOG: WD40-like repeat 26.8 7E+02 0.015 25.5 14.2 63 42-104 67-134 (370)
474 KOG2734 Uncharacterized conser 26.5 7.2E+02 0.016 26.4 10.7 59 503-561 193-254 (536)
475 PF01011 PQQ: PQQ enzyme repea 26.5 1.3E+02 0.0028 19.4 3.8 24 6-29 3-27 (38)
476 KOG1897 Damage-specific DNA bi 26.1 6.8E+02 0.015 29.4 11.2 91 9-99 844-942 (1096)
477 smart00509 TFS2N Domain in the 26.0 2.3E+02 0.005 21.8 5.6 48 511-558 20-67 (75)
478 KOG4500 Rho/Rac GTPase guanine 25.6 8.3E+02 0.018 25.9 11.1 118 420-543 330-452 (604)
479 COG3391 Uncharacterized conser 25.1 7.8E+02 0.017 25.5 17.7 142 2-170 126-286 (381)
480 KOG0166 Karyopherin (importin) 25.1 3.2E+02 0.0069 29.6 8.2 103 420-529 81-190 (514)
481 PF00514 Arm: Armadillo/beta-c 24.5 1.3E+02 0.0029 19.5 3.6 27 450-476 14-40 (41)
482 PF01731 Arylesterase: Arylest 24.5 3E+02 0.0064 21.9 6.1 29 72-100 55-85 (86)
483 PF12348 CLASP_N: CLASP N term 24.4 5.9E+02 0.013 23.8 10.4 91 421-521 69-160 (228)
484 KOG2247 WD40 repeat-containing 23.0 21 0.00046 37.6 -0.9 90 7-98 91-187 (615)
485 PF10433 MMS1_N: Mono-function 22.3 7.9E+02 0.017 26.4 11.2 95 2-96 221-339 (504)
486 KOG2247 WD40 repeat-containing 22.1 29 0.00064 36.6 -0.0 67 36-102 38-108 (615)
487 PF03088 Str_synth: Strictosid 21.9 1.7E+02 0.0037 23.4 4.3 33 12-44 36-68 (89)
488 PF07250 Glyoxal_oxid_N: Glyox 21.5 1.5E+02 0.0033 28.7 4.7 57 34-90 68-138 (243)
489 KOG4464 Signaling protein RIC- 20.9 9.1E+02 0.02 25.4 10.1 91 363-456 51-151 (532)
490 KOG2160 Armadillo/beta-catenin 20.4 9.2E+02 0.02 24.7 10.0 68 492-560 168-238 (342)
491 KOG2171 Karyopherin (importin) 20.4 7.4E+02 0.016 29.4 10.4 103 417-521 130-235 (1075)
No 1
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=100.00 E-value=5.8e-96 Score=743.52 Aligned_cols=535 Identities=42% Similarity=0.672 Sum_probs=458.3
Q ss_pred CCCCEEEEEECCCcEEEEcCCCceeEEEecCCCcEEEEEEcCC-CeEEEEeCCCcEEEEcCCceeEEEecCC-cEEEEEE
Q 008510 1 MPGVGIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHAS-GLIVSGSEDRFAKIWKDGVCVQSIEHPG-CVWDAKF 78 (563)
Q Consensus 1 ~~g~~l~s~s~DgtIrlWd~~g~~i~~l~gH~~~V~~v~~~p~-g~l~s~s~D~tvriWd~~~~~~~l~h~~-~V~~v~~ 78 (563)
||+..|+||||||.||+|+++|+++.++.||+++||+++..++ +.++|+|+||++|||+.++|.|.|+||+ .||++++
T Consensus 188 l~~~~flScsNDg~Ir~w~~~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~e~~q~I~lPttsiWsa~~ 267 (745)
T KOG0301|consen 188 LDDSHFLSCSNDGSIRLWDLDGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKDECVQVITLPTTSIWSAKV 267 (745)
T ss_pred ecCCCeEeecCCceEEEEeccCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecCceEEEEecCccceEEEEE
Confidence 5777899999999999999999999999999999999995554 4999999999999999779999999998 9999999
Q ss_pred ccCCcEEEEeCCCcEEEEEcCCCceeceeeeccccccc-ceeEEeeccCCceEEEeCCCCceeeecccCCCeEEEEecCC
Q 008510 79 LENGDIVTACSDGVTRIWTVHSDKVADSLELEAYASEL-SQYKLCRKKVGGLKLEDLPGLEALQIPGTNAGQTKVVREGD 157 (563)
Q Consensus 79 ~p~g~i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~i~~~d~~~~~~l~~~g~~dg~~~l~~~~~ 157 (563)
.+||+|++||+||.||||+.+..|.++.+.+++|+..+ .+........|.|+.-++|+.+.+..+|++||++.+++.++
T Consensus 268 L~NgDIvvg~SDG~VrVfT~~k~R~As~evl~afd~~v~s~~~~kt~~~g~v~~~~lPg~e~L~spGt~dGq~~~Vr~~~ 347 (745)
T KOG0301|consen 268 LLNGDIVVGGSDGRVRVFTVDKDRKASDEVLKAFDAEVVSQISSKTEEVGGVKKDDLPGLEILKSPGTRDGQTKVVRDGE 347 (745)
T ss_pred eeCCCEEEeccCceEEEEEecccccCCHHHHHHHHHHHHhhhhhhhhhhCccccccCCchhhhcCCCCCCCcEEEEEcCC
Confidence 99999999999999999999999999999999999888 55555666778999999999999999999999999999999
Q ss_pred CeEEEEEecccceEEE--eCcEeeCCCCCCCceeecCcccCcEEEEEcCCCCeeeeecCCCCCChhHHHHHHHHhcCCCc
Q 008510 158 NGVAYSWDMKEQKWDK--LGEVVDGPDDGMNRPILDGIQYDYVFDVDIGDGEPTRKLPYNRSDNPYDAADKWLLKENLPF 235 (563)
Q Consensus 158 ~~~~~~wd~~~~~w~~--~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~~dg~~~~~~~~n~~~~~w~~a~~f~~~~~l~~ 235 (563)
+..+|+|......|.+ +|++++..+.. +|.+++|++|||||+||++||+|++++|||.++|||.+|++|+++|+||.
T Consensus 348 ~v~ayqws~~e~r~ikdvig~~~~~~~~s-~K~l~EGKeYDyvF~VDi~dGep~~kLPyN~sdnPy~AA~~FL~k~~Lp~ 426 (745)
T KOG0301|consen 348 NVEAYQWSNGEWRWIKDVIGEVVAAQGNS-GKVLHEGKEYDYVFDVDIGDGEPPYKLPYNVSDNPYQAAQKFLEKNQLPV 426 (745)
T ss_pred cceeEEeecccceeeccccccccccCCCC-cceeecccccceEEEEEccCCCCceecCcCCCCCHHHHHHHHHHHccCCH
Confidence 9999999987777776 56666655443 69999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHhcCCCC-cCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc-------e--------eeeccceEEec
Q 008510 236 SYRQQIVEFILQNTGQKD-FTLNTSFRDPYTGASAYVPGQPSSMSAIPAKPTF-------K--------HIPKKGMLIFD 299 (563)
Q Consensus 236 ~~~~~v~~fi~~n~~~~~-~~~~~~~~~p~~~~~~y~p~~~~~~~~~~~~~~~-------~--------~~P~~~~~~f~ 299 (563)
+|+|||++||++|+.|.+ ....+.|.|||||++|||||++++ +++|..|.. . ++|.+.|..|+
T Consensus 427 sy~dqvv~FI~kNt~g~~l~~~~~~~~dpftg~~ryvp~SSnt-~~dpft~~~~yv~~~~n~~~~~~~y~~p~~~~~~~~ 505 (745)
T KOG0301|consen 427 SYRDQVVKFILKNTDGLSLFAANPSYEDPFTGGGRYVPGSSNT-AADPFTGSGRYVPSSSNPLTGDSGYSLPVKKQRIFD 505 (745)
T ss_pred HHHHHHHHHHHHhcccccccccCCcccCccCCCcccccccccc-cCCCCCCccccccccccccccccccccchhheeecc
Confidence 999999999999998887 455666999999999999966553 334433322 2 58888888888
Q ss_pred ccChHHHHHHHHHHHHhhhcccccccCCCCHHHHHHHHHHHHHhhcCCCccCCCCchhhHHHHHHHHhcCCCCCccchhc
Q 008510 300 AAQFDGILKKIMEFNNALLFDLEKKNLSMSELETSRVAAVVKILKDTSHYHCSSFADVDISLLLKLLKTWPPAMIFPVID 379 (563)
Q Consensus 300 ~~n~~~l~~Kl~efn~~~~~~~~~~~~~l~~~el~~l~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~Wp~~~~fP~lD 379 (563)
..|.. +|||+ .+++++|+..+++++..++.++.|+ ....+.+.+|..++ +||.+++||+||
T Consensus 506 ~~~~~------~~~N~----------~kl~~d~~~~~eeil~li~~s~~~~--~e~~~~l~~l~~l~-~wp~~~~fPalD 566 (745)
T KOG0301|consen 506 TLNPK------KELNA----------PKLNPDEINGLEEILSLIKNSSHYS--SEVLQSLLALAILL-QWPVEMMFPALD 566 (745)
T ss_pred ccCch------hhhcC----------cccCcchhhhHHHHHHhhcCCCCcc--chhHHHHHHHHHHh-cCCHHHhhhHHH
Confidence 87776 56662 3566889999999999888776443 43445555555555 999999999999
Q ss_pred HHHHhhcCCCchhhhhhcccchhhHHHHHHHhhcCCCCCcchHHHHHHHHHhhcCCCccHHHHHhhHHHHHHHhhhhccC
Q 008510 380 ILRMTILHPDGASLLLKHVENQNDVLMEMIEKVSSNPTLPANLLTGIRAVTNLFKNSSWYSWLQKNRSEILDAFSSCYSS 459 (563)
Q Consensus 380 L~Rl~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~lR~l~N~f~~~~~~~~~~~~~~~il~~~~~~~~~ 459 (563)
++|+++.|+..+++++.. +.+++++..++.... ..++|+||++|+|||+|.|+.++++++++++.+++.+..+...
T Consensus 567 ilRl~v~h~~~~s~~~~~-~~~~~~~~~li~~~~---~~~an~ll~vR~L~N~f~~~~g~~~~~s~~~~i~~~~~~~~s~ 642 (745)
T KOG0301|consen 567 ILRLAVKHHSSNSLFCDR-EEGQNLVGTLIPILN---ADPANQLLVVRCLANLFSNPAGRELFMSRLESILDPVIEASSL 642 (745)
T ss_pred HHHHHHhccchhhhhhhh-hhhhHHHHhhhcccc---cchhHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhhhhhhhcc
Confidence 999999999999999843 344566677765554 4579999999999999999999999999999999999999888
Q ss_pred CChhHHHHHHHHHHHHHhhhhhcCCchhhhHHHHHHHHhhhhcccChhHHHHHHHHHhhhhc-hhHHHHHhhhcChHHHH
Q 008510 460 SNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAALEIAEEESIEVDSKYRALVAIGTLML-EGLVKKIALDFDVGNIA 538 (563)
Q Consensus 460 ~~k~~~~a~atl~~N~s~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~Ea~~R~l~AlG~l~~-~~~~~~~~~~~~~~~~~ 538 (563)
.+||+++|+||++||||+.+++...+.+..+++..++..+.....|-||.||+|||||||++ +..++++|+..+++.++
T Consensus 643 ~~knl~ia~atlaln~sv~l~~~~~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~~~~~~A~~~~v~sia 722 (745)
T KOG0301|consen 643 SNKNLQIALATLALNYSVLLIQDNEQLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDASVIQLAKNRSVDSIA 722 (745)
T ss_pred cchhHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccHHHHHHHHhcCHHHHH
Confidence 89999999999999999999998776555555554444443456778999999999999999 55899999999999999
Q ss_pred HHHhh-cCChhHHHHHHHHHHHh
Q 008510 539 RVAKA-SKETKIAEVGADIELLA 560 (563)
Q Consensus 539 ~~~~~-~~~~~i~~~~~ei~~ll 560 (563)
+++++ ...++.+++++.|++++
T Consensus 723 ~~~~~~~~~~~~k~~a~~il~~~ 745 (745)
T KOG0301|consen 723 KKLKEAVSNPSGKNIARDILSLL 745 (745)
T ss_pred HHHHHhccCchhhHHHHHHHhcC
Confidence 99998 55667888999877664
No 2
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=100.00 E-value=1.7e-47 Score=379.29 Aligned_cols=261 Identities=39% Similarity=0.581 Sum_probs=206.9
Q ss_pred eeeeccceEEecccChHHHHHHHHHHHHhhhcccccccCCCCHHHHHHHHHHHHHhhcCCCccCCCCchhhHHHHHHHHh
Q 008510 288 KHIPKKGMLIFDAAQFDGILKKIMEFNNALLFDLEKKNLSMSELETSRVAAVVKILKDTSHYHCSSFADVDISLLLKLLK 367 (563)
Q Consensus 288 ~~~P~~~~~~f~~~n~~~l~~Kl~efn~~~~~~~~~~~~~l~~~el~~l~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 367 (563)
||||+++|+.|+++|++++++||+|||+++ +++.+|+|+|+..|++++..+++.+.+++ ....+..++.+++.
T Consensus 1 k~~P~~~yl~f~~~n~~~i~~KL~efn~~~-----~~~~~l~~~el~~L~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 73 (268)
T PF08324_consen 1 KYFPQKSYLYFKQANLDKILKKLKEFNEKL-----QKELKLSEEELESLESLLSALKSTSAYHS--DLSAWLILLLKILL 73 (268)
T ss_dssp SS-S--S--------HHHHHHHHHHHHTTS-----HCCT-S-HHHHHHHHHHHCCCCCC-SS-----HHHHHHHHHHHHC
T ss_pred CCCCCCCeeeeccCCHHHHHHHHHHHHHhC-----ccccCCCHHHHHHHHHHHHHhcCCCcccc--chhHHHHHHHHHHH
Confidence 689999999999999999999999999986 46899999999999999987776655443 34566777888888
Q ss_pred cCCCCCccchhcHHHHhhcCCCchhhhhhcccchhhHHHHHHHhhcCCCCCcchHHHHHHHHHhhcCCCccHHHHHhhHH
Q 008510 368 TWPPAMIFPVIDILRMTILHPDGASLLLKHVENQNDVLMEMIEKVSSNPTLPANLLTGIRAVTNLFKNSSWYSWLQKNRS 447 (563)
Q Consensus 368 ~Wp~~~~fP~lDL~Rl~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~lR~l~N~f~~~~~~~~~~~~~~ 447 (563)
+||++++||+|||+|++++||+++++++.......+.+..++..... +..++|+||++|++||+|.|+.|+++++++..
T Consensus 74 ~Wp~~~~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~ 152 (268)
T PF08324_consen 74 SWPPESRFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSS-SSPPANQMLALRLLANLFSHPPGRQLLLSHFD 152 (268)
T ss_dssp CS-CCC-HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTT-TSSHHHHHHHHHHHHHHTTSCCCHHHHHCTHH
T ss_pred hCCCccchhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccC-CCcHHHHHHHHHHHHHhhCCCccHHHHHhccc
Confidence 99999999999999999999999998873221112344444444332 35679999999999999999999999999999
Q ss_pred -HHHHHhhhhccCC---ChhHHHHHHHHHHHHHhhhhhcC-CchhhhHHHHHHHHhhhhcccChhHHHHHHHHHhhhhc-
Q 008510 448 -EILDAFSSCYSSS---NKNVQLSYSTLILNYAVLLIEKK-DEEGQSHVLSAALEIAEEESIEVDSKYRALVAIGTLML- 521 (563)
Q Consensus 448 -~il~~~~~~~~~~---~k~~~~a~atl~~N~s~~~~~~~-~~~~~~~l~~~~~~~l~~~~~~~Ea~~R~l~AlG~l~~- 521 (563)
.|++.+.....+. +||+|+|+||++||||+++++.+ +.+.+.++++.+.+++..++.|+|++||+|+|||||++
T Consensus 153 ~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~ 232 (268)
T PF08324_consen 153 SSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTLLSS 232 (268)
T ss_dssp TCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCC
T ss_pred chHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhcc
Confidence 9999998887765 99999999999999999999998 67788899999999776677899999999999999999
Q ss_pred hhHHHHHhhhcChHHHHHHHhh-cCChhHHHHHHHH
Q 008510 522 EGLVKKIALDFDVGNIARVAKA-SKETKIAEVGADI 556 (563)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~ei 556 (563)
++...++++.+++.+++.+.+. ++++||++|++||
T Consensus 233 ~~~~~~~~~~l~~~~~~~~~~~~~~e~ri~~v~~ei 268 (268)
T PF08324_consen 233 SDSAKQLAKSLDVKSVLSKKANKSKEPRIKEVAAEI 268 (268)
T ss_dssp SHHHHHHCCCCTHHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred ChhHHHHHHHcChHHHHHHHHhcccchHHHHHhccC
Confidence 6688889999999999877765 8899999999997
No 3
>PF09070 PFU: PFU (PLAA family ubiquitin binding); InterPro: IPR015155 The PFU (for PLAA family ubiquitin binding domain) is an ubiquitin binding domain with no homology to several known ubiquitin binding domains (e.g., UIM, NZF, UBA, UEV, UBP, or CUE domains). The PFU domain appears to be unique to the PLAA family of proteins. A single member of this family of proteins exists in every eukaryotic species examined. Each of these homologues possesses identical domain structure: an N-terminal domain containing seven WD40 repeats, a central PFU domain, and a C-terminal PUL domain, which directly binds to Cdc48, a member of the AAA-ATPase family of molecular chaperone []. In addition to ubiquitin, the PFU domain of DOA1 has been shown to bind to the SH3 domain []. Secondary structure predictions of the PFU domain suggest the presence of an extensive length of beta-sheet, N-terminal to an alpha-helical region []. Some proteins known to contain a PFU domain include: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in the ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein Lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 2K8B_B 2K8A_A 2K8C_B 2K89_A 3L3F_X 3PST_A 3PSP_A.
Probab=99.93 E-value=1.6e-26 Score=191.13 Aligned_cols=110 Identities=53% Similarity=0.963 Sum_probs=60.3
Q ss_pred ecccCCCeEEEEecC-CCeEEEEEecccceEEEeCcEeeCCCC--CCCceeecCcccCcEEEEEcCCCCeeeeecCCCCC
Q 008510 142 IPGTNAGQTKVVREG-DNGVAYSWDMKEQKWDKLGEVVDGPDD--GMNRPILDGIQYDYVFDVDIGDGEPTRKLPYNRSD 218 (563)
Q Consensus 142 ~~g~~dg~~~l~~~~-~~~~~~~wd~~~~~w~~~g~v~~~~~~--~~~~~~~~g~~~d~v~~vd~~dg~~~~~~~~n~~~ 218 (563)
.+|.++|+++|++.+ +...+|+|+ .+.|.++|+|+++++. ..++..|+|++|||||+|++++|.+.+++|||.++
T Consensus 2 ~~G~keGq~~~vr~~~g~veay~Ws--~~~W~kiG~Vv~~~~~~~~~~k~~~~Gk~YDyVf~Vdi~dg~~~lkLpyN~~d 79 (116)
T PF09070_consen 2 QPGKKEGQVKMVRNGNGKVEAYQWS--EGKWEKIGEVVGGPGTGSSGGKKYYEGKEYDYVFDVDIEDGGPPLKLPYNKGD 79 (116)
T ss_dssp -------------------------------------------TTSSSSEEETTEEESEEEEE--STTSS-EEEEE-TTS
T ss_pred CCCCccceEEEEEcCCCCEEEEEec--CCceEEeEEEeCCCCCCcccccccccCccceEEEEEEecCCCcceeCCccCCC
Confidence 468899999999999 556699999 8999999999995543 35889999999999999999999999999999999
Q ss_pred ChhHHHHHHHHhcCCCcccHHHHHHHHHHhcCCCC
Q 008510 219 NPYDAADKWLLKENLPFSYRQQIVEFILQNTGQKD 253 (563)
Q Consensus 219 ~~w~~a~~f~~~~~l~~~~~~~v~~fi~~n~~~~~ 253 (563)
+||.+|++||.+|+||++|+++|++||++|+++.+
T Consensus 80 nP~~aAq~Fi~~n~Lp~~yl~qI~~FI~~N~~~~~ 114 (116)
T PF09070_consen 80 NPYEAAQKFIERNNLPQSYLDQIANFIIQNTKGAN 114 (116)
T ss_dssp -HHHHHHHHHHHHT--CCHHHHHHHHHHHHHSTTT
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCcC
Confidence 99999999999999999999999999999999865
No 4
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=7.6e-25 Score=213.18 Aligned_cols=202 Identities=22% Similarity=0.354 Sum_probs=157.7
Q ss_pred CCEEEEEECCCcEEEEcCC-CceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEEEE
Q 008510 3 GVGIISASHDCTIRLWALT-GQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDAK 77 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~~-g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~v~ 77 (563)
+.-++||+.||++|+|+++ ..++..+.||...|..|+|+|+| +++|+|.|.+-|+|| ++..+.... |...|.+++
T Consensus 231 ~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~ia 310 (459)
T KOG0272|consen 231 DLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIA 310 (459)
T ss_pred ccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeE
Confidence 4579999999999999994 48999999999999999999999 999999999999999 555444333 999999999
Q ss_pred EccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccccce-------e-EEeeccCCceEEEeCCCCceeee-cccCC
Q 008510 78 FLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELSQ-------Y-KLCRKKVGGLKLEDLPGLEALQI-PGTNA 147 (563)
Q Consensus 78 ~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~~-------~-~~~~~~~~~i~~~d~~~~~~l~~-~g~~d 147 (563)
|.|||. ++|||.|..-||||+|+++++. .+.+|...+-. + ..+++.|+.+++||++....+.. ++|.+
T Consensus 311 f~~DGSL~~tGGlD~~~RvWDlRtgr~im--~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~n 388 (459)
T KOG0272|consen 311 FQPDGSLAATGGLDSLGRVWDLRTGRCIM--FLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSN 388 (459)
T ss_pred ecCCCceeeccCccchhheeecccCcEEE--EecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccc
Confidence 999999 8999999999999999999553 34445554433 3 34678899999999998765543 35554
Q ss_pred CeEEEEec----------CCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeeeecCCC
Q 008510 148 GQTKVVRE----------GDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRKLPYNR 216 (563)
Q Consensus 148 g~~~l~~~----------~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~ 216 (563)
-...+-.. +-+..+.+|+. ..|.+ .+...||+ +.|+++|+ +||..+++.+||.
T Consensus 389 lVS~Vk~~p~~g~fL~TasyD~t~kiWs~--~~~~~-------------~ksLaGHe-~kV~s~Dis~d~~~i~t~s~DR 452 (459)
T KOG0272|consen 389 LVSQVKYSPQEGYFLVTASYDNTVKIWST--RTWSP-------------LKSLAGHE-GKVISLDISPDSQAIATSSFDR 452 (459)
T ss_pred hhhheEecccCCeEEEEcccCcceeeecC--CCccc-------------chhhcCCc-cceEEEEeccCCceEEEeccCc
Confidence 33333332 22344455553 22332 33466777 88999999 9999999999999
Q ss_pred CCChhH
Q 008510 217 SDNPYD 222 (563)
Q Consensus 217 ~~~~w~ 222 (563)
+++.|.
T Consensus 453 T~KLW~ 458 (459)
T KOG0272|consen 453 TIKLWR 458 (459)
T ss_pred eeeecc
Confidence 999995
No 5
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=2.2e-23 Score=200.44 Aligned_cols=207 Identities=21% Similarity=0.338 Sum_probs=162.5
Q ss_pred CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCce-eEEEe-cCCcEEE
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVC-VQSIE-HPGCVWD 75 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~-~~~l~-h~~~V~~ 75 (563)
+|.+++|||.|.|+|+||+ +..+..+.+||...|.||+|+||| .++||+.||+|++|| +|++ ...+. |...|.+
T Consensus 126 ~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~ 205 (480)
T KOG0271|consen 126 TGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITA 205 (480)
T ss_pred CCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeE
Confidence 5789999999999999999 788999999999999999999999 999999999999999 5554 45677 9999999
Q ss_pred EEEcc-----CCc-EEEEeCCCcEEEEEcCCCceeceeeecccccccc-------eeEEeeccCCceEEEeCCCCceeee
Q 008510 76 AKFLE-----NGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELS-------QYKLCRKKVGGLKLEDLPGLEALQI 142 (563)
Q Consensus 76 v~~~p-----~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~-------~~~~~~~~~~~i~~~d~~~~~~l~~ 142 (563)
++|.| ..+ +++++.||.|||||+..+++. ..+.+|..+|. ..+.+++.|+.|++|+...+.....
T Consensus 206 Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~--~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~ 283 (480)
T KOG0271|consen 206 LAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCV--RTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRE 283 (480)
T ss_pred EeecccccCCCccceecccCCCCEEEEEccCceEE--EEeccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHh
Confidence 99987 344 999999999999999988743 35566666665 4556788999999999865322111
Q ss_pred c-cc---------------------CCC------------------------eEEEEecCCCeEEEEEecccceEEEeCc
Q 008510 143 P-GT---------------------NAG------------------------QTKVVREGDNGVAYSWDMKEQKWDKLGE 176 (563)
Q Consensus 143 ~-g~---------------------~dg------------------------~~~l~~~~~~~~~~~wd~~~~~w~~~g~ 176 (563)
. || +.| .-+++...|+...+.|+..... .
T Consensus 284 lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~k-k---- 358 (480)
T KOG0271|consen 284 LKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSK-K---- 358 (480)
T ss_pred hcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccc-c----
Confidence 0 11 111 1257777777888888854321 0
Q ss_pred EeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeeeecCCCCCChhHHHH
Q 008510 177 VVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRKLPYNRSDNPYDAAD 225 (563)
Q Consensus 177 v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~~~~~w~~a~ 225 (563)
...-..||. ..|..|.| |||+.+++.+||++++.|+-..
T Consensus 359 ---------pi~rmtgHq-~lVn~V~fSPd~r~IASaSFDkSVkLW~g~t 398 (480)
T KOG0271|consen 359 ---------PITRMTGHQ-ALVNHVSFSPDGRYIASASFDKSVKLWDGRT 398 (480)
T ss_pred ---------chhhhhchh-hheeeEEECCCccEEEEeecccceeeeeCCC
Confidence 112245665 67999999 9999999999999999999753
No 6
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.90 E-value=2.4e-22 Score=186.50 Aligned_cols=212 Identities=24% Similarity=0.263 Sum_probs=162.0
Q ss_pred CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc-CCceeEEEe---cCCcEEE
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-DGVCVQSIE---HPGCVWD 75 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd-~~~~~~~l~---h~~~V~~ 75 (563)
||++++|+|.|+++|+||+ +|+..+.|.||+.-|.+++|+||. +++|||.|+|+++|+ -+.|..++. +.+.|.|
T Consensus 74 dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVsc 153 (315)
T KOG0279|consen 74 DGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSC 153 (315)
T ss_pred CCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEE
Confidence 6899999999999999999 889999999999999999999999 999999999999999 889998887 3679999
Q ss_pred EEEccCC-c--EEEEeCCCcEEEEEcCCCceeceeeecccccccc--------eeEEeeccCCceEEEeCCCCceeeecc
Q 008510 76 AKFLENG-D--IVTACSDGVTRIWTVHSDKVADSLELEAYASELS--------QYKLCRKKVGGLKLEDLPGLEALQIPG 144 (563)
Q Consensus 76 v~~~p~g-~--i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~--------~~~~~~~~~~~i~~~d~~~~~~l~~~g 144 (563)
|.|+|+. + |+++|.|++||+||+++-+... ...++...+. ....++..+|.+.+||+...+.+...+
T Consensus 154 vrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~--~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~ 231 (315)
T KOG0279|consen 154 VRFSPNESNPIIVSASWDKTVKVWNLRNCQLRT--TFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE 231 (315)
T ss_pred EEEcCCCCCcEEEEccCCceEEEEccCCcchhh--ccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc
Confidence 9999985 2 8999999999999999876432 2233333333 334467788999999999888877777
Q ss_pred cCCCeEEEEecCCCeE--------EEEEecccceEEEe--CcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeeeec
Q 008510 145 TNAGQTKVVREGDNGV--------AYSWDMKEQKWDKL--GEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRKLP 213 (563)
Q Consensus 145 ~~dg~~~l~~~~~~~~--------~~~wd~~~~~w~~~--g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~ 213 (563)
+.+-...++++++... +.+||..++....- -+..+. ..... .-+..+..+ .||..++.+-
T Consensus 232 a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~--------s~~~~-~~~clslaws~dG~tLf~g~ 302 (315)
T KOG0279|consen 232 AFDIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKLDGIGP--------SSKAG-DPICLSLAWSADGQTLFAGY 302 (315)
T ss_pred CCCeEeeEEecCCceeEeeccCCceEEEeccchhhhhhcccccccc--------ccccC-CcEEEEEEEcCCCcEEEeee
Confidence 7676666666665322 34666554432110 111111 01111 134677777 8999999999
Q ss_pred CCCCCChhHHH
Q 008510 214 YNRSDNPYDAA 224 (563)
Q Consensus 214 ~n~~~~~w~~a 224 (563)
-|+.+++|.++
T Consensus 303 td~~irv~qv~ 313 (315)
T KOG0279|consen 303 TDNVIRVWQVA 313 (315)
T ss_pred cCCcEEEEEee
Confidence 99999999875
No 7
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.90 E-value=3e-23 Score=202.05 Aligned_cols=205 Identities=17% Similarity=0.223 Sum_probs=159.1
Q ss_pred CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCC--C-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEE
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHAS--G-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVW 74 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~--g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~ 74 (563)
|++.|+|||.+|++++|+. ++..+.+|.||++.|.++.|+|. + .++||+.||+|++|+ +...++.+. |...|.
T Consensus 186 ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs 265 (459)
T KOG0272|consen 186 DSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVS 265 (459)
T ss_pred CCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhhe
Confidence 6889999999999999999 88999999999999999999997 4 899999999999999 447888888 999999
Q ss_pred EEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeeccccccccee--------EEeeccCCceEEEeCCCCceeee-cc
Q 008510 75 DAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELSQY--------KLCRKKVGGLKLEDLPGLEALQI-PG 144 (563)
Q Consensus 75 ~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~~~--------~~~~~~~~~i~~~d~~~~~~l~~-~g 144 (563)
.|+|+|+|+ ++|+|.|.+-|+||++++.... ..++|...|... ..+++-|..-++||++++..+.. .|
T Consensus 266 ~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL--~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~g 343 (459)
T KOG0272|consen 266 RVAFHPSGKFLGTASFDSTWRLWDLETKSELL--LQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAG 343 (459)
T ss_pred eeeecCCCceeeecccccchhhcccccchhhH--hhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecc
Confidence 999999999 9999999999999999987322 233455444433 34566677788999998755433 25
Q ss_pred cCCCeEEEEecCC---------CeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-C-CCCeeeeec
Q 008510 145 TNAGQTKVVREGD---------NGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-G-DGEPTRKLP 213 (563)
Q Consensus 145 ~~dg~~~l~~~~~---------~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~-dg~~~~~~~ 213 (563)
|.+..+.+-++++ +..+.+||...+. ....+.+|. +-|-.|.+ + .|..+++.+
T Consensus 344 H~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~---------------~ly~ipAH~-nlVS~Vk~~p~~g~fL~Tas 407 (459)
T KOG0272|consen 344 HIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRS---------------ELYTIPAHS-NLVSQVKYSPQEGYFLVTAS 407 (459)
T ss_pred cccceeeEeECCCceEEeecCCCCcEEEeeecccc---------------cceeccccc-chhhheEecccCCeEEEEcc
Confidence 5443333333333 3556677754432 122345565 77888998 4 788899999
Q ss_pred CCCCCChhHHH
Q 008510 214 YNRSDNPYDAA 224 (563)
Q Consensus 214 ~n~~~~~w~~a 224 (563)
||.++++|...
T Consensus 408 yD~t~kiWs~~ 418 (459)
T KOG0272|consen 408 YDNTVKIWSTR 418 (459)
T ss_pred cCcceeeecCC
Confidence 99999999863
No 8
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=5.6e-22 Score=179.76 Aligned_cols=220 Identities=17% Similarity=0.215 Sum_probs=175.5
Q ss_pred CCCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEE
Q 008510 1 MPGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWD 75 (563)
Q Consensus 1 ~~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~ 75 (563)
.||++.++|++|.+||+|+. .|.+++++.||...|..++.+.|+ .|++||.|+.|.+|| +|+.++.+. |.+.|..
T Consensus 27 ~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNt 106 (307)
T KOG0316|consen 27 VDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNT 106 (307)
T ss_pred cCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeE
Confidence 37999999999999999999 999999999999999999999888 999999999999999 999999999 9999999
Q ss_pred EEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccccce------eEEeeccCCceEEEeCCCCcee--------
Q 008510 76 AKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELSQ------YKLCRKKVGGLKLEDLPGLEAL-------- 140 (563)
Q Consensus 76 v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~~------~~~~~~~~~~i~~~d~~~~~~l-------- 140 (563)
|+|+.+.. +++|+.|.++|+||-|+....+.+.+..+.+.+.. .++.++.||.++.+|++.+...
T Consensus 107 V~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heIvaGS~DGtvRtydiR~G~l~sDy~g~pi 186 (307)
T KOG0316|consen 107 VRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIVAGSVDGTVRTYDIRKGTLSSDYFGHPI 186 (307)
T ss_pred EEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecccEEEeeccCCcEEEEEeecceeehhhcCCcc
Confidence 99999887 89999999999999999887777777766666553 3456788999999999866433
Q ss_pred -eecccCCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCC---------CCCCceeecCcccCcEEEEEcCCCCeee
Q 008510 141 -QIPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPD---------DGMNRPILDGIQYDYVFDVDIGDGEPTR 210 (563)
Q Consensus 141 -~~~g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~---------~~~~~~~~~g~~~d~v~~vd~~dg~~~~ 210 (563)
....++||...+..+-+ ..+..-|..+|+.. +...++.+ .+.....+.|.+.+.||-||+.|+..+.
T Consensus 187 t~vs~s~d~nc~La~~l~-stlrLlDk~tGklL--~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~s 263 (307)
T KOG0316|consen 187 TSVSFSKDGNCSLASSLD-STLRLLDKETGKLL--KSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQIS 263 (307)
T ss_pred eeEEecCCCCEEEEeecc-ceeeecccchhHHH--HHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeee
Confidence 33467788877777766 44455665555321 11222211 1125667889999999999998888888
Q ss_pred eecCCCCCChhHH
Q 008510 211 KLPYNRSDNPYDA 223 (563)
Q Consensus 211 ~~~~n~~~~~w~~ 223 (563)
+++.-.++++-++
T Consensus 264 k~~~~~~v~v~dl 276 (307)
T KOG0316|consen 264 KLSVVSTVIVTDL 276 (307)
T ss_pred eeccCCceeEEee
Confidence 8887666654444
No 9
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.88 E-value=1.9e-21 Score=181.51 Aligned_cols=182 Identities=25% Similarity=0.413 Sum_probs=148.0
Q ss_pred CCCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcC-CC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEE
Q 008510 1 MPGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHA-SG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVW 74 (563)
Q Consensus 1 ~~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p-~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~ 74 (563)
+|+..|+|+|.|.|.-+||+ +|+.+..|.||++-|.+++++| ++ .|+||+-|++.++|| .+.|.|+|. |...|.
T Consensus 154 ~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDIN 233 (343)
T KOG0286|consen 154 LDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDIN 233 (343)
T ss_pred cCCCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccc
Confidence 46788999999999999999 8999999999999999999999 66 899999999999999 899999999 999999
Q ss_pred EEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccccceeEEeeccCCceEEEeCCCCceeeecccCCCeEEEE
Q 008510 75 DAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLCRKKVGGLKLEDLPGLEALQIPGTNAGQTKVV 153 (563)
Q Consensus 75 ~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~d~~~~~~l~~~g~~dg~~~l~ 153 (563)
+|+|.|+|. |++|+.|++.|+||+|..+.+....-... -..+..+.++..|...+.
T Consensus 234 sv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~-----------------------~~gitSv~FS~SGRlLfa 290 (343)
T KOG0286|consen 234 SVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSI-----------------------ICGITSVAFSKSGRLLFA 290 (343)
T ss_pred eEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcc-----------------------cCCceeEEEcccccEEEe
Confidence 999999999 99999999999999999873322110000 001223346667776666
Q ss_pred ecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeeeecCCCCCChhH
Q 008510 154 REGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRKLPYNRSDNPYD 222 (563)
Q Consensus 154 ~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~~~~~w~ 222 (563)
.- ++..+++||.-.+ +.++ ...||+ +.|-++.+ +||..+.++++|...++|.
T Consensus 291 gy-~d~~c~vWDtlk~------e~vg---------~L~GHe-NRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 291 GY-DDFTCNVWDTLKG------ERVG---------VLAGHE-NRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred ee-cCCceeEeecccc------ceEE---------EeeccC-CeeEEEEECCCCcEEEecchhHheeecC
Confidence 54 4466788885433 2333 356787 88999999 9999999999999999994
No 10
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=1.3e-21 Score=188.42 Aligned_cols=204 Identities=25% Similarity=0.363 Sum_probs=159.1
Q ss_pred CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCCeEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEEEE
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDAK 77 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~v~ 77 (563)
+.++|+|+|.||+|||||+ .|+|+..+.||+..|+||+|-.+|.+.|||.|++||+|+ +|.+.+.++ |...|..++
T Consensus 216 ~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~la 295 (480)
T KOG0271|consen 216 PCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLA 295 (480)
T ss_pred CccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeee
Confidence 3578999999999999999 789999999999999999999888999999999999999 889999998 888999999
Q ss_pred Ecc------------------------------------CCc-EEEEeCCCcEEEEEcCCCceeceeeecccccccc---
Q 008510 78 FLE------------------------------------NGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELS--- 117 (563)
Q Consensus 78 ~~p------------------------------------~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~--- 117 (563)
.+. .|+ +++||.|.++.+|+....+ .+...+.+|+..|.
T Consensus 296 lsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~k-kpi~rmtgHq~lVn~V~ 374 (480)
T KOG0271|consen 296 LSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSK-KPITRMTGHQALVNHVS 374 (480)
T ss_pred ccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccc-cchhhhhchhhheeeEE
Confidence 871 123 8999999999999976554 22334445555444
Q ss_pred -----eeEEeeccCCceEEEeCCCCceeeec-ccCCCeEEEEecCCC---------eEEEEEecccceEEEeCcEeeCCC
Q 008510 118 -----QYKLCRKKVGGLKLEDLPGLEALQIP-GTNAGQTKVVREGDN---------GVAYSWDMKEQKWDKLGEVVDGPD 182 (563)
Q Consensus 118 -----~~~~~~~~~~~i~~~d~~~~~~l~~~-g~~dg~~~l~~~~~~---------~~~~~wd~~~~~w~~~g~v~~~~~ 182 (563)
.++.+++.|..|++|+.+++..+... ||-+-.+.+..+.|. ....+|+..+++
T Consensus 375 fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkK------------ 442 (480)
T KOG0271|consen 375 FSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKK------------ 442 (480)
T ss_pred ECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeee------------
Confidence 34456788999999999988776554 666666655555442 334455544331
Q ss_pred CCCCceeecCcccCcEEEEEc-CCCCeeeeecCCCCCChhH
Q 008510 183 DGMNRPILDGIQYDYVFDVDI-GDGEPTRKLPYNRSDNPYD 222 (563)
Q Consensus 183 ~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~~~~~w~ 222 (563)
-++-..||. |.||.||+ +||+.+.++.-|+-.+.|.
T Consensus 443 ---l~~DLpGh~-DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 443 ---LKQDLPGHA-DEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred ---ecccCCCCC-ceEEEEEecCCCceeecCCCceEEEeec
Confidence 112255776 88999999 9999999999999888774
No 11
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.87 E-value=8.6e-22 Score=205.68 Aligned_cols=183 Identities=21% Similarity=0.333 Sum_probs=155.7
Q ss_pred CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEEE
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDA 76 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~v 76 (563)
+.++|+|||.|++||+|++ +..++..++||..+|++|.|+|.| +|+|+|.|++.|+|. ....++.+. |-+.|.|+
T Consensus 462 d~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv 541 (707)
T KOG0263|consen 462 DRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCV 541 (707)
T ss_pred cccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhcccccccceE
Confidence 3578999999999999999 888999999999999999999999 999999999999999 556677777 99999999
Q ss_pred EEccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccccceeEEeeccCCceEEEeCCCCceeeecccCCCeEEEEec
Q 008510 77 KFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLCRKKVGGLKLEDLPGLEALQIPGTNAGQTKVVRE 155 (563)
Q Consensus 77 ~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~d~~~~~~l~~~g~~dg~~~l~~~ 155 (563)
+|+||.. +++||+|.+||+||..+|. .++++.-+...+.....+++|.+....+
T Consensus 542 ~FHPNs~Y~aTGSsD~tVRlWDv~~G~-------------------------~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ 596 (707)
T KOG0263|consen 542 SFHPNSNYVATGSSDRTVRLWDVSTGN-------------------------SVRIFTGHKGPVTALAFSPCGRYLASGD 596 (707)
T ss_pred EECCcccccccCCCCceEEEEEcCCCc-------------------------EEEEecCCCCceEEEEEcCCCceEeecc
Confidence 9999998 9999999999999999997 3556655556666677888998877666
Q ss_pred CCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeeeecCCCCCChhHHHHH
Q 008510 156 GDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRKLPYNRSDNPYDAADK 226 (563)
Q Consensus 156 ~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~~~~~w~~a~~ 226 (563)
.+ +.+.+||...+. ....+.|| .+-|+++.| .||..++.++.|.+++.|++-..
T Consensus 597 ed-~~I~iWDl~~~~---------------~v~~l~~H-t~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 597 ED-GLIKIWDLANGS---------------LVKQLKGH-TGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred cC-CcEEEEEcCCCc---------------chhhhhcc-cCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 65 667789976542 22336667 488999999 89999999999999999987554
No 12
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.86 E-value=2.4e-22 Score=191.01 Aligned_cols=204 Identities=22% Similarity=0.333 Sum_probs=165.7
Q ss_pred CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCCeEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEEEE
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDAK 77 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~v~ 77 (563)
|+..++||..|.||++||. +-.|++.+.||++.|.|+.+... .++|||.|.||+||| +++++.++- |...|..+.
T Consensus 206 DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~r-viisGSSDsTvrvWDv~tge~l~tlihHceaVLhlr 284 (499)
T KOG0281|consen 206 DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDER-VIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLR 284 (499)
T ss_pred cchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccce-EEEecCCCceEEEEeccCCchhhHHhhhcceeEEEE
Confidence 5678999999999999999 78899999999999999998644 899999999999999 999999887 777999999
Q ss_pred EccCCcEEEEeCCCcEEEEEcCCCcee-ceeeecccccccc------eeEEeeccCCceEEEeCCCCceeeec-ccCCCe
Q 008510 78 FLENGDIVTACSDGVTRIWTVHSDKVA-DSLELEAYASELS------QYKLCRKKVGGLKLEDLPGLEALQIP-GTNAGQ 149 (563)
Q Consensus 78 ~~p~g~i~sgs~Dg~Irvwd~~~~~~~-~~~~~~~~~~~v~------~~~~~~~~~~~i~~~d~~~~~~l~~~-g~~dg~ 149 (563)
|+ +|.+++++.|.+|+|||+.+.... ....+.+|...|+ .++++++.|.+|++|+..+.+.+... ||+-|.
T Consensus 285 f~-ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~kyIVsASgDRTikvW~~st~efvRtl~gHkRGI 363 (499)
T KOG0281|consen 285 FS-NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGI 363 (499)
T ss_pred Ee-CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccceEEEecCCceEEEEeccceeeehhhhcccccc
Confidence 86 567999999999999999876521 1123344544433 56778899999999999999887765 887764
Q ss_pred E-------EEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEcCCCCeeeeecCCCCCChhH
Q 008510 150 T-------KVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDIGDGEPTRKLPYNRSDNPYD 222 (563)
Q Consensus 150 ~-------~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~~dg~~~~~~~~n~~~~~w~ 222 (563)
. .++.++.+..+.+||...|.+ ....+||+ +.|-++.|.+ +.+.++.||+++++|+
T Consensus 364 AClQYr~rlvVSGSSDntIRlwdi~~G~c---------------LRvLeGHE-eLvRciRFd~-krIVSGaYDGkikvWd 426 (499)
T KOG0281|consen 364 ACLQYRDRLVVSGSSDNTIRLWDIECGAC---------------LRVLEGHE-ELVRCIRFDN-KRIVSGAYDGKIKVWD 426 (499)
T ss_pred eehhccCeEEEecCCCceEEEEeccccHH---------------HHHHhchH-HhhhheeecC-ceeeeccccceEEEEe
Confidence 3 455555667788888766542 34588998 8899999955 4599999999999999
Q ss_pred HH
Q 008510 223 AA 224 (563)
Q Consensus 223 ~a 224 (563)
..
T Consensus 427 l~ 428 (499)
T KOG0281|consen 427 LQ 428 (499)
T ss_pred cc
Confidence 74
No 13
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.85 E-value=8.1e-20 Score=167.08 Aligned_cols=219 Identities=18% Similarity=0.298 Sum_probs=107.8
Q ss_pred CEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc----CCceeEEEe-cCCcEEEE
Q 008510 4 VGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK----DGVCVQSIE-HPGCVWDA 76 (563)
Q Consensus 4 ~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd----~~~~~~~l~-h~~~V~~v 76 (563)
-+|+|+|.|-|||+|.. +|.|.+++.-..+.|..+.+.|++ .+++++ ...||+|| ...++.++. |+..|.+|
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~-~qhvRlyD~~S~np~Pv~t~e~h~kNVtaV 89 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAG-NQHVRLYDLNSNNPNPVATFEGHTKNVTAV 89 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhcc-CCeeEEEEccCCCCCceeEEeccCCceEEE
Confidence 36788888888888887 777766654333445555555554 333333 23355555 122344444 44455555
Q ss_pred EEccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccc-----cccceeEEeeccCCceEEEeCCCCce-----------
Q 008510 77 KFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYA-----SELSQYKLCRKKVGGLKLEDLPGLEA----------- 139 (563)
Q Consensus 77 ~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~i~~~d~~~~~~----------- 139 (563)
.|.-+|+ +++||.||++||||+|...+.+.....+-. ..-..-.+++.++|.|++||+.....
T Consensus 90 gF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~ 169 (311)
T KOG0315|consen 90 GFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTS 169 (311)
T ss_pred EEeecCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcc
Confidence 5555555 455555555555555444332221111111 11123334444445555555533210
Q ss_pred e-eecccCCCeEEEEecCCCeEEEEEecccceE----EEe------------------CcEeeCCCCCC-----------
Q 008510 140 L-QIPGTNAGQTKVVREGDNGVAYSWDMKEQKW----DKL------------------GEVVDGPDDGM----------- 185 (563)
Q Consensus 140 l-~~~g~~dg~~~l~~~~~~~~~~~wd~~~~~w----~~~------------------g~v~~~~~~~~----------- 185 (563)
+ ...-.+||... ...++++.+|.|+...+.. .++ +......++..
T Consensus 170 i~sl~v~~dgsml-~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~ 248 (311)
T KOG0315|consen 170 IQSLTVMPDGSML-AAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFF 248 (311)
T ss_pred eeeEEEcCCCcEE-EEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCce
Confidence 0 11123344322 2223334445554322210 000 00000000000
Q ss_pred -CceeecCcccCcEEEEEc-CCCCeeeeecCCCCCChhHHHH
Q 008510 186 -NRPILDGIQYDYVFDVDI-GDGEPTRKLPYNRSDNPYDAAD 225 (563)
Q Consensus 186 -~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~~~~~w~~a~ 225 (563)
.....+||+ .++++..| .||+++.+.+.|...++|+.+.
T Consensus 249 kle~~l~gh~-rWvWdc~FS~dg~YlvTassd~~~rlW~~~~ 289 (311)
T KOG0315|consen 249 KLELVLTGHQ-RWVWDCAFSADGEYLVTASSDHTARLWDLSA 289 (311)
T ss_pred eeEEEeecCC-ceEEeeeeccCccEEEecCCCCceeeccccc
Confidence 112355665 78999999 8999999999999999999863
No 14
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.85 E-value=8e-20 Score=169.81 Aligned_cols=207 Identities=19% Similarity=0.226 Sum_probs=163.9
Q ss_pred CCEEEEEECCCcEEEEcC------CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCc
Q 008510 3 GVGIISASHDCTIRLWAL------TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGC 72 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~------~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~ 72 (563)
-+.++++|.|.++.+|++ .|.+++.+.||+.+|..+..+++| +++|+|.|+++|+|| +++..+.|. |...
T Consensus 28 ~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~d 107 (315)
T KOG0279|consen 28 SDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKD 107 (315)
T ss_pred CceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCc
Confidence 367999999999999998 267899999999999999999999 999999999999999 778888777 9999
Q ss_pred EEEEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeeccccccc----------ceeEEeeccCCceEEEeCCCCceee
Q 008510 73 VWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASEL----------SQYKLCRKKVGGLKLEDLPGLEALQ 141 (563)
Q Consensus 73 V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v----------~~~~~~~~~~~~i~~~d~~~~~~l~ 141 (563)
|.+|+|+||.+ |++|+.|.+|++|+...........-. ..+.| ...+++.+.|+.+++||+.+.+...
T Consensus 108 Vlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~-~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~ 186 (315)
T KOG0279|consen 108 VLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDS-HREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRT 186 (315)
T ss_pred eEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCC-CcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhh
Confidence 99999999988 999999999999999876543221111 02222 3455677789999999998665432
Q ss_pred -----------ecccCCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEcCCCCeee
Q 008510 142 -----------IPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDIGDGEPTR 210 (563)
Q Consensus 142 -----------~~g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~~dg~~~~ 210 (563)
...++||........ ++.++.||...++ .+|.=...+.|.++.|...++.+
T Consensus 187 ~~~gh~~~v~t~~vSpDGslcasGgk-dg~~~LwdL~~~k-----------------~lysl~a~~~v~sl~fspnrywL 248 (315)
T KOG0279|consen 187 TFIGHSGYVNTVTVSPDGSLCASGGK-DGEAMLWDLNEGK-----------------NLYSLEAFDIVNSLCFSPNRYWL 248 (315)
T ss_pred ccccccccEEEEEECCCCCEEecCCC-CceEEEEEccCCc-----------------eeEeccCCCeEeeEEecCCceeE
Confidence 236788887766444 4788999987653 22332334789999997788999
Q ss_pred eecCCCCCChhHHHHHHH
Q 008510 211 KLPYNRSDNPYDAADKWL 228 (563)
Q Consensus 211 ~~~~n~~~~~w~~a~~f~ 228 (563)
......++++|+...+.+
T Consensus 249 ~~at~~sIkIwdl~~~~~ 266 (315)
T KOG0279|consen 249 CAATATSIKIWDLESKAV 266 (315)
T ss_pred eeccCCceEEEeccchhh
Confidence 999999999999876643
No 15
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.82 E-value=5.5e-19 Score=187.92 Aligned_cols=206 Identities=26% Similarity=0.377 Sum_probs=151.6
Q ss_pred CCCEEEEEECCCcEEEEcC--CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEE
Q 008510 2 PGVGIISASHDCTIRLWAL--TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWD 75 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~--~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~ 75 (563)
+|+++++|+.|++||+||+ .+.+++++.||..+|++++|+|+| .++||+.|++||||| +++++..+. |.+.|.+
T Consensus 214 d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~ 293 (456)
T KOG0266|consen 214 DGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISG 293 (456)
T ss_pred CCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEE
Confidence 5789999999999999999 468999999999999999999999 999999999999999 789999999 9999999
Q ss_pred EEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeeccccc----------ccceeEEeeccCCceEEEeCCCCceeeec-
Q 008510 76 AKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYAS----------ELSQYKLCRKKVGGLKLEDLPGLEALQIP- 143 (563)
Q Consensus 76 v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~----------~v~~~~~~~~~~~~i~~~d~~~~~~l~~~- 143 (563)
++|+++|. +++++.|+.|++||+.++.......+...+. .-..+.+.+..++.+++||+.........
T Consensus 294 ~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~ 373 (456)
T KOG0266|consen 294 LAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYT 373 (456)
T ss_pred EEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeec
Confidence 99999999 8999999999999999998321111111111 22355667778889999999866554433
Q ss_pred ccCCC-------------eEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCee
Q 008510 144 GTNAG-------------QTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPT 209 (563)
Q Consensus 144 g~~dg-------------~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~ 209 (563)
++..+ ...+....+ ..+++|+..++ .....++||...-+..+++ +....+
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~i~sg~~d-~~v~~~~~~s~---------------~~~~~l~~h~~~~~~~~~~~~~~~~~ 437 (456)
T KOG0266|consen 374 GHSNLVRCIFSPTLSTGGKLIYSGSED-GSVYVWDSSSG---------------GILQRLEGHSKAAVSDLSSHPTENLI 437 (456)
T ss_pred ccCCcceeEecccccCCCCeEEEEeCC-ceEEEEeCCcc---------------chhhhhcCCCCCceeccccCCCcCee
Confidence 55444 222222222 33445554332 1334466663356777777 566667
Q ss_pred eeec--CCCCCChhHH
Q 008510 210 RKLP--YNRSDNPYDA 223 (563)
Q Consensus 210 ~~~~--~n~~~~~w~~ 223 (563)
...+ .|..++.|..
T Consensus 438 ~s~s~~~d~~~~~w~~ 453 (456)
T KOG0266|consen 438 ASSSFEGDGLIRLWKY 453 (456)
T ss_pred eecCcCCCceEEEecC
Confidence 7777 4566777754
No 16
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.82 E-value=1.4e-19 Score=173.04 Aligned_cols=206 Identities=17% Similarity=0.245 Sum_probs=153.4
Q ss_pred CCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEEEE
Q 008510 3 GVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDAK 77 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~v~ 77 (563)
+.+|+|||.|++|+|||+ +|++..++.||...|..|++++.. +++++++|+.|+.|| ..+.++.+. |-..|.|++
T Consensus 163 n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~ 242 (460)
T KOG0285|consen 163 NEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLD 242 (460)
T ss_pred ceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEe
Confidence 468999999999999999 999999999999999999999988 999999999999999 667777666 888999999
Q ss_pred EccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccccc--------eeEEeeccCCceEEEeCCCCceeeecccCCC
Q 008510 78 FLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELS--------QYKLCRKKVGGLKLEDLPGLEALQIPGTNAG 148 (563)
Q Consensus 78 ~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~--------~~~~~~~~~~~i~~~d~~~~~~l~~~g~~dg 148 (563)
.+|.-+ |++|+.|.++||||+|+.. +...+.+|...|. ...++++.|++|++||+..+.......+...
T Consensus 243 lhPTldvl~t~grDst~RvWDiRtr~--~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkk 320 (460)
T KOG0285|consen 243 LHPTLDVLVTGGRDSTIRVWDIRTRA--SVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKK 320 (460)
T ss_pred ccccceeEEecCCcceEEEeeecccc--eEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccc
Confidence 999877 9999999999999999976 4446666666554 4556788899999999987765544433222
Q ss_pred -eEEEEec--------CCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEcCCCCeeeeecCCCCCC
Q 008510 149 -QTKVVRE--------GDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDIGDGEPTRKLPYNRSDN 219 (563)
Q Consensus 149 -~~~l~~~--------~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~~dg~~~~~~~~n~~~~ 219 (563)
...++-. .....+.+|+...+.+. . .+.||. ..+.++...+...+++++.|+.+-
T Consensus 321 svral~lhP~e~~fASas~dnik~w~~p~g~f~------~---------nlsgh~-~iintl~~nsD~v~~~G~dng~~~ 384 (460)
T KOG0285|consen 321 SVRALCLHPKENLFASASPDNIKQWKLPEGEFL------Q---------NLSGHN-AIINTLSVNSDGVLVSGGDNGSIM 384 (460)
T ss_pred eeeEEecCCchhhhhccCCccceeccCCccchh------h---------cccccc-ceeeeeeeccCceEEEcCCceEEE
Confidence 2222222 11122345554443221 1 144554 667777773333577888888887
Q ss_pred hhHHHHH
Q 008510 220 PYDAADK 226 (563)
Q Consensus 220 ~w~~a~~ 226 (563)
-|+-.++
T Consensus 385 fwdwksg 391 (460)
T KOG0285|consen 385 FWDWKSG 391 (460)
T ss_pred EEecCcC
Confidence 7776543
No 17
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.82 E-value=5.8e-20 Score=182.15 Aligned_cols=209 Identities=18% Similarity=0.228 Sum_probs=160.8
Q ss_pred CCCEEEEEECCCcEEEEcC--CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEecCCcEEEE
Q 008510 2 PGVGIISASHDCTIRLWAL--TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIEHPGCVWDA 76 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~--~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~h~~~V~~v 76 (563)
.+.+|+|||.|+.|+||++ +++|+++|.||..+|.+++|+++| .|.|+|-|+++++|| +|+|++.+.....+.||
T Consensus 226 ~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~cv 305 (503)
T KOG0282|consen 226 KGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPTCV 305 (503)
T ss_pred eeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecCCCceee
Confidence 3678999999999999999 699999999999999999999999 999999999999999 99999999887899999
Q ss_pred EEccCC-c-EEEEeCCCcEEEEEcCCCceeceeeeccccccc--------ceeEEeeccCCceEEEeCCCCceeee----
Q 008510 77 KFLENG-D-IVTACSDGVTRIWTVHSDKVADSLELEAYASEL--------SQYKLCRKKVGGLKLEDLPGLEALQI---- 142 (563)
Q Consensus 77 ~~~p~g-~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v--------~~~~~~~~~~~~i~~~d~~~~~~l~~---- 142 (563)
.|+|++ . +++|++|+.|+-||+|+++..+. ...+-..+ ....++...++.+++|+.+.+..+..
T Consensus 306 kf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqe--Yd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~ 383 (503)
T KOG0282|consen 306 KFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQE--YDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADP 383 (503)
T ss_pred ecCCCCCcEEEEecCCCcEEEEeccchHHHHH--HHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcch
Confidence 999988 4 89999999999999999984321 11121222 24456777889999999976533321
Q ss_pred --------cccCCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcc-cCcEEEEEc-CCCCeeeee
Q 008510 143 --------PGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQ-YDYVFDVDI-GDGEPTRKL 212 (563)
Q Consensus 143 --------~g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~-~d~v~~vd~-~dg~~~~~~ 212 (563)
.-++.|.+...-+-+ ..+++++... .. ....++.|+||. -+|-..|++ +||+.+.++
T Consensus 384 ~~hsmP~~~~~P~~~~~~aQs~d-N~i~ifs~~~-------~~-----r~nkkK~feGh~vaGys~~v~fSpDG~~l~SG 450 (503)
T KOG0282|consen 384 EMHTMPCLTLHPNGKWFAAQSMD-NYIAIFSTVP-------PF-----RLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSG 450 (503)
T ss_pred hhccCcceecCCCCCeehhhccC-ceEEEEeccc-------cc-----ccCHhhhhcceeccCceeeEEEcCCCCeEEee
Confidence 134445444444333 3333444211 11 112667788874 378899999 999999999
Q ss_pred cCCCCCChhHHHH
Q 008510 213 PYNRSDNPYDAAD 225 (563)
Q Consensus 213 ~~n~~~~~w~~a~ 225 (563)
.-++..+.|+-..
T Consensus 451 dsdG~v~~wdwkt 463 (503)
T KOG0282|consen 451 DSDGKVNFWDWKT 463 (503)
T ss_pred cCCccEEEeechh
Confidence 9999999998754
No 18
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.82 E-value=6.7e-19 Score=187.26 Aligned_cols=206 Identities=24% Similarity=0.412 Sum_probs=159.5
Q ss_pred CCCEEEEEECCCcEEEEcC-CCc--eeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc---CCceeEEEe-cCCcE
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQ--VLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK---DGVCVQSIE-HPGCV 73 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~--~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd---~~~~~~~l~-h~~~V 73 (563)
+|+.+++++.|+++++|+. .++ ..+++.+|...|++++|+|+| .+++|+.|+++|||| .+.+++++. |+..|
T Consensus 170 ~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v 249 (456)
T KOG0266|consen 170 DGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYV 249 (456)
T ss_pred CCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCce
Confidence 6889999999999999999 666 788889999999999999999 999999999999999 568999998 99999
Q ss_pred EEEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccccc--------eeEEeeccCCceEEEeCCCCcee--e-
Q 008510 74 WDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELS--------QYKLCRKKVGGLKLEDLPGLEAL--Q- 141 (563)
Q Consensus 74 ~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~--------~~~~~~~~~~~i~~~d~~~~~~l--~- 141 (563)
.+++|+|+|+ +++|+.|++||+||++++++.. .+..|.+.+. ....+++.++.|++||+.+.... .
T Consensus 250 ~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~--~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~ 327 (456)
T KOG0266|consen 250 TSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVR--KLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKL 327 (456)
T ss_pred EEEEecCCCCEEEEecCCCcEEEEeccCCeEEE--eeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeec
Confidence 9999999998 9999999999999999977443 4455554444 33445677999999999888721 1
Q ss_pred ------------ecccCCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccC--cEEEEEc-CCC
Q 008510 142 ------------IPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYD--YVFDVDI-GDG 206 (563)
Q Consensus 142 ------------~~g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d--~v~~vd~-~dg 206 (563)
..++++|.+.+....+ ..+.+|+...+. -...+.||..+ -+++... .+|
T Consensus 328 ~~~~~~~~~~~~~~fsp~~~~ll~~~~d-~~~~~w~l~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~ 391 (456)
T KOG0266|consen 328 LSGAENSAPVTSVQFSPNGKYLLSASLD-RTLKLWDLRSGK---------------SVGTYTGHSNLVRCIFSPTLSTGG 391 (456)
T ss_pred ccCCCCCCceeEEEECCCCcEEEEecCC-CeEEEEEccCCc---------------ceeeecccCCcceeEecccccCCC
Confidence 1144555555555444 444566654432 12235555544 2345554 899
Q ss_pred CeeeeecCCCCCChhHHHH
Q 008510 207 EPTRKLPYNRSDNPYDAAD 225 (563)
Q Consensus 207 ~~~~~~~~n~~~~~w~~a~ 225 (563)
+.++++..|..+.+|+...
T Consensus 392 ~~i~sg~~d~~v~~~~~~s 410 (456)
T KOG0266|consen 392 KLIYSGSEDGSVYVWDSSS 410 (456)
T ss_pred CeEEEEeCCceEEEEeCCc
Confidence 9999999999999999864
No 19
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.81 E-value=7.1e-19 Score=165.05 Aligned_cols=220 Identities=18% Similarity=0.256 Sum_probs=164.3
Q ss_pred CCCEEEEEECCCcEEEEcCC--CceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEE
Q 008510 2 PGVGIISASHDCTIRLWALT--GQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWD 75 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~~--g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~ 75 (563)
+|..|+|||.|..|.+|++. .+-..+++||.+.|..+.|++|+ .++|||.|++|+.|| +|++++.++ |...|.+
T Consensus 58 ~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs 137 (338)
T KOG0265|consen 58 DGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNS 137 (338)
T ss_pred CCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeee
Confidence 58899999999999999984 45567889999999999999999 999999999999999 999998888 8889999
Q ss_pred EEEccCCc--EEEEeCCCcEEEEEcCCCceecee----eecccc-cccceeEEeeccCCceEEEeCCCCceeeec-ccCC
Q 008510 76 AKFLENGD--IVTACSDGVTRIWTVHSDKVADSL----ELEAYA-SELSQYKLCRKKVGGLKLEDLPGLEALQIP-GTNA 147 (563)
Q Consensus 76 v~~~p~g~--i~sgs~Dg~Irvwd~~~~~~~~~~----~~~~~~-~~v~~~~~~~~~~~~i~~~d~~~~~~l~~~-g~~d 147 (563)
+.-+.-|. +.+|+.|+++|+||.|+...+... ++.++. ..-....+++.-|+.|++||++..+.+... ||.|
T Consensus 138 ~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~D 217 (338)
T KOG0265|consen 138 LDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHAD 217 (338)
T ss_pred cCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccC
Confidence 98555565 688999999999999977643322 222221 123355667778899999999988887665 9999
Q ss_pred CeEEEEecCCCeE--EEEEecccceEEEeCcEeeCCCCCCCceeecCcccC---cEEEEEc-CCCCeeeeecCCCCCChh
Q 008510 148 GQTKVVREGDNGV--AYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYD---YVFDVDI-GDGEPTRKLPYNRSDNPY 221 (563)
Q Consensus 148 g~~~l~~~~~~~~--~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d---~v~~vd~-~dg~~~~~~~~n~~~~~w 221 (563)
-.+-+..+.++.. .-..|.+.+.|+.-. -........+|+|+... ....+.+ +++..+..++.|+.+-+|
T Consensus 218 tIt~lsls~~gs~llsnsMd~tvrvwd~rp----~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvw 293 (338)
T KOG0265|consen 218 TITGLSLSRYGSFLLSNSMDNTVRVWDVRP----FAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVW 293 (338)
T ss_pred ceeeEEeccCCCccccccccceEEEEEecc----cCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEe
Confidence 9888887766543 223344445554321 11111124567775322 2466777 888888889999999999
Q ss_pred HHHH
Q 008510 222 DAAD 225 (563)
Q Consensus 222 ~~a~ 225 (563)
++..
T Consensus 294 d~~~ 297 (338)
T KOG0265|consen 294 DTTS 297 (338)
T ss_pred eccc
Confidence 8864
No 20
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.81 E-value=1e-18 Score=181.16 Aligned_cols=183 Identities=19% Similarity=0.364 Sum_probs=149.5
Q ss_pred CCEEEEEECC-CcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEEE
Q 008510 3 GVGIISASHD-CTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDA 76 (563)
Q Consensus 3 g~~l~s~s~D-gtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~v 76 (563)
|+++|-|+.- |.+-||++ +..-+.+.+||...+.+++++||| .++||++||.||||| ++-|+.++. |+..|..+
T Consensus 319 GDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v 398 (893)
T KOG0291|consen 319 GDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAV 398 (893)
T ss_pred CCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEE
Confidence 7888877654 89999999 667778889999999999999999 999999999999999 888999999 99999999
Q ss_pred EEccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccccceeEEeeccCCceEEEeCCCCceee-ecccCCCeEEEEe
Q 008510 77 KFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLCRKKVGGLKLEDLPGLEALQ-IPGTNAGQTKVVR 154 (563)
Q Consensus 77 ~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~d~~~~~~l~-~~g~~dg~~~l~~ 154 (563)
.|+.+|+ +++.|.||+||.||+...+..+ -+..|.+.... +..-+.|.+....
T Consensus 399 ~f~~~g~~llssSLDGtVRAwDlkRYrNfR-------------------------Tft~P~p~QfscvavD~sGelV~AG 453 (893)
T KOG0291|consen 399 QFTARGNVLLSSSLDGTVRAWDLKRYRNFR-------------------------TFTSPEPIQFSCVAVDPSGELVCAG 453 (893)
T ss_pred EEEecCCEEEEeecCCeEEeeeecccceee-------------------------eecCCCceeeeEEEEcCCCCEEEee
Confidence 9999999 9999999999999999887322 22223222221 1234457777777
Q ss_pred cCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeeeecCCCCCChhHHHHH
Q 008510 155 EGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRKLPYNRSDNPYDAADK 226 (563)
Q Consensus 155 ~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~~~~~w~~a~~ 226 (563)
..|.-.+++|+..+|+.. -+..||+ +-|..+.+ ++|..+++++||+++++|++-.+
T Consensus 454 ~~d~F~IfvWS~qTGqll---------------DiLsGHE-gPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s 510 (893)
T KOG0291|consen 454 AQDSFEIFVWSVQTGQLL---------------DILSGHE-GPVSGLSFSPDGSLLASGSWDKTVRIWDIFSS 510 (893)
T ss_pred ccceEEEEEEEeecCeee---------------ehhcCCC-CcceeeEEccccCeEEeccccceEEEEEeecc
Confidence 777677999998777532 2366787 78999999 89999999999999999998654
No 21
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.79 E-value=2e-18 Score=165.17 Aligned_cols=208 Identities=22% Similarity=0.342 Sum_probs=156.9
Q ss_pred CEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEEEEE
Q 008510 4 VGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDAKF 78 (563)
Q Consensus 4 ~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~v~~ 78 (563)
-+++||+.|+.|+-||+ ..+.++.+.||-+.|+|++.+|.- .++|||.|.++|||| +...+.++. |...|.+|.+
T Consensus 206 pYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~ 285 (460)
T KOG0285|consen 206 PYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMC 285 (460)
T ss_pred ceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEe
Confidence 37999999999999999 789999999999999999999976 999999999999999 777888888 9999999999
Q ss_pred cc-CCcEEEEeCCCcEEEEEcCCCceeceeeecccccc-------cceeEEeeccCCceEEEeCCCCceeeec-------
Q 008510 79 LE-NGDIVTACSDGVTRIWTVHSDKVADSLELEAYASE-------LSQYKLCRKKVGGLKLEDLPGLEALQIP------- 143 (563)
Q Consensus 79 ~p-~g~i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~-------v~~~~~~~~~~~~i~~~d~~~~~~l~~~------- 143 (563)
.| |+.+++||.|++||+||++.++... .+..+... .....++......|+.|++|.++.+...
T Consensus 286 ~~~dpqvit~S~D~tvrlWDl~agkt~~--tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~~nlsgh~~ii 363 (460)
T KOG0285|consen 286 QPTDPQVITGSHDSTVRLWDLRAGKTMI--TLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQNLSGHNAII 363 (460)
T ss_pred ecCCCceEEecCCceEEEeeeccCceeE--eeecccceeeEEecCCchhhhhccCCccceeccCCccchhhcccccccee
Confidence 98 5559999999999999999998442 22333333 3334455666679999999988765441
Q ss_pred ----ccCCCeEEEEecCCCeEEEEEecccce-EEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeeeecCCCC
Q 008510 144 ----GTNAGQTKVVREGDNGVAYSWDMKEQK-WDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRKLPYNRS 217 (563)
Q Consensus 144 ----g~~dg~~~l~~~~~~~~~~~wd~~~~~-w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~~ 217 (563)
+..||. ++.++|++.++.||-.+|- ++....++.. ++ .++. --||.-.| ..|..+.++.-|++
T Consensus 364 ntl~~nsD~v--~~~G~dng~~~fwdwksg~nyQ~~~t~vqp-GS------l~sE--agI~as~fDktg~rlit~eadKt 432 (460)
T KOG0285|consen 364 NTLSVNSDGV--LVSGGDNGSIMFWDWKSGHNYQRGQTIVQP-GS------LESE--AGIFASCFDKTGSRLITGEADKT 432 (460)
T ss_pred eeeeeccCce--EEEcCCceEEEEEecCcCcccccccccccC-Cc------cccc--cceeEEeecccCceEEeccCCcc
Confidence 334443 4556677888889866553 2222222221 10 1111 22677777 68888999999999
Q ss_pred CChhHHH
Q 008510 218 DNPYDAA 224 (563)
Q Consensus 218 ~~~w~~a 224 (563)
+++|.-.
T Consensus 433 Ik~~keD 439 (460)
T KOG0285|consen 433 IKMYKED 439 (460)
T ss_pred eEEEecc
Confidence 9999743
No 22
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=3.1e-18 Score=174.20 Aligned_cols=164 Identities=22% Similarity=0.385 Sum_probs=134.5
Q ss_pred CEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc---CCceeEEEe-cCCcEEEEE
Q 008510 4 VGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK---DGVCVQSIE-HPGCVWDAK 77 (563)
Q Consensus 4 ~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd---~~~~~~~l~-h~~~V~~v~ 77 (563)
+++++||.|+.||+|+. +++.+++++.|.++|.|++++|.. .+.|+|.|-+||+|| .-.|.|++. |...|.+|+
T Consensus 68 nWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~ 147 (794)
T KOG0276|consen 68 NWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVA 147 (794)
T ss_pred ceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEE
Confidence 57999999999999999 899999999999999999999998 999999999999999 557889998 999999999
Q ss_pred EccCCc--EEEEeCCCcEEEEEcCCCceeceeeecccccccc----------eeEEeeccCCceEEEeCCCCceeeec-c
Q 008510 78 FLENGD--IVTACSDGVTRIWTVHSDKVADSLELEAYASELS----------QYKLCRKKVGGLKLEDLPGLEALQIP-G 144 (563)
Q Consensus 78 ~~p~g~--i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~----------~~~~~~~~~~~i~~~d~~~~~~l~~~-g 144 (563)
|+|+.. ++++|.|++|+||.+.+.. +..++++|+..|+ .+.+++..|..+++||..+...++.. |
T Consensus 148 fnPkD~ntFaS~sLDrTVKVWslgs~~--~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeG 225 (794)
T KOG0276|consen 148 FNPKDPNTFASASLDRTVKVWSLGSPH--PNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEG 225 (794)
T ss_pred ecCCCccceeeeeccccEEEEEcCCCC--CceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhc
Confidence 999654 9999999999999998775 4567778877665 36678888999999999877655443 4
Q ss_pred cCCC----------eEEEEecCCCeEEEEEecccce
Q 008510 145 TNAG----------QTKVVREGDNGVAYSWDMKEQK 170 (563)
Q Consensus 145 ~~dg----------~~~l~~~~~~~~~~~wd~~~~~ 170 (563)
|... .+.+.+ +.++.+.+|+..+..
T Consensus 226 Ht~Nvs~v~fhp~lpiiisg-sEDGTvriWhs~Ty~ 260 (794)
T KOG0276|consen 226 HTNNVSFVFFHPELPIIISG-SEDGTVRIWNSKTYK 260 (794)
T ss_pred ccccceEEEecCCCcEEEEe-cCCccEEEecCccee
Confidence 4433 333333 334666778765544
No 23
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=1.2e-18 Score=159.87 Aligned_cols=210 Identities=22% Similarity=0.314 Sum_probs=156.8
Q ss_pred CCEEEEEECCCcEEEEcC--CCceeEEEecCCCcEEEEEEcCCC--eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEE
Q 008510 3 GVGIISASHDCTIRLWAL--TGQVLMEMVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWD 75 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~--~g~~i~~l~gH~~~V~~v~~~p~g--~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~ 75 (563)
.+.+++|+.||++|+||+ ...++..++.|...|+++.|++.. .++++|.|+|||+|+ .++.++++. |...|..
T Consensus 73 e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~ 152 (311)
T KOG0277|consen 73 ENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQ 152 (311)
T ss_pred cceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEE
Confidence 357899999999999998 567999999999999999999864 788999999999999 788899998 9999999
Q ss_pred EEEccCC-c-EEEEeCCCcEEEEEcCCCceeceeeecccccc---------cceeEEeeccCCceEEEeCCCCceee--e
Q 008510 76 AKFLENG-D-IVTACSDGVTRIWTVHSDKVADSLELEAYASE---------LSQYKLCRKKVGGLKLEDLPGLEALQ--I 142 (563)
Q Consensus 76 v~~~p~g-~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~---------v~~~~~~~~~~~~i~~~d~~~~~~l~--~ 142 (563)
.+|+|.. + ++++|.|+++++||++..-... .+..|..+ -..+..++..|+.|+.||++...... .
T Consensus 153 a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~--~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL 230 (311)
T KOG0277|consen 153 AAFSPHIPNLFASASGDGTLRLWDVRSPGKFM--SIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFEL 230 (311)
T ss_pred EecCCCCCCeEEEccCCceEEEEEecCCCcee--EEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceee
Confidence 9999954 4 8999999999999998653222 23333322 22456678889999999998654322 2
Q ss_pred cccCCCeEEEEecCCCe--E-EEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc--CCCCeeeeecCCCC
Q 008510 143 PGTNAGQTKVVREGDNG--V-AYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI--GDGEPTRKLPYNRS 217 (563)
Q Consensus 143 ~g~~dg~~~l~~~~~~~--~-~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~--~dg~~~~~~~~n~~ 217 (563)
.||.--..++-+++.-. . .+.||++.+.|+... .. ..+..++ ++..+|+.+|+ .++..+++.++|..
T Consensus 231 ~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~---~d----s~~e~~~-~HtEFv~g~Dws~~~~~~vAs~gWDe~ 302 (311)
T KOG0277|consen 231 NGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPER---QD----SAIETVD-HHTEFVCGLDWSLFDPGQVASTGWDEL 302 (311)
T ss_pred cCCceEEEEEecCcchhhHhhhccccceEEeccccc---ch----hhhhhhh-ccceEEeccccccccCceeeecccccc
Confidence 25544444555554321 1 457888888887431 00 0122233 34488998888 57778999999999
Q ss_pred CChhH
Q 008510 218 DNPYD 222 (563)
Q Consensus 218 ~~~w~ 222 (563)
.++|+
T Consensus 303 l~Vw~ 307 (311)
T KOG0277|consen 303 LYVWN 307 (311)
T ss_pred eeeec
Confidence 99997
No 24
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.79 E-value=1.6e-18 Score=166.45 Aligned_cols=203 Identities=21% Similarity=0.331 Sum_probs=160.0
Q ss_pred CCCEEEEEECCCcEEEEcC--CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEE
Q 008510 2 PGVGIISASHDCTIRLWAL--TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWD 75 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~--~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~ 75 (563)
.|.++++||.|-.+++||. ..+|++.+.||...|.+|+|-|.| .++||+.|.+|+.|+ ++-|+.++. |+..|..
T Consensus 161 ~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~ 240 (406)
T KOG0295|consen 161 SGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRM 240 (406)
T ss_pred CccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEE
Confidence 4789999999999999999 368999999999999999999999 999999999999999 999999999 9899999
Q ss_pred EEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccc------------------c-----ceeEEeeccCCceEE
Q 008510 76 AKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASE------------------L-----SQYKLCRKKVGGLKL 131 (563)
Q Consensus 76 v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~------------------v-----~~~~~~~~~~~~i~~ 131 (563)
++.+.||. +++++.|.++++|-+.++++.. .++.|+.. . ..+..+++.|+.|++
T Consensus 241 v~v~~DGti~As~s~dqtl~vW~~~t~~~k~--~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~ 318 (406)
T KOG0295|consen 241 VRVNQDGTIIASCSNDQTLRVWVVATKQCKA--ELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKI 318 (406)
T ss_pred EEecCCeeEEEecCCCceEEEEEeccchhhh--hhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEE
Confidence 99999999 8999999999999999884221 11111111 1 146667889999999
Q ss_pred EeCCCCceeeec-ccCC----------CeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEE
Q 008510 132 EDLPGLEALQIP-GTNA----------GQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFD 200 (563)
Q Consensus 132 ~d~~~~~~l~~~-g~~d----------g~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~ 200 (563)
||++++..+... ||.+ |++.+.. .|++...+||...+++.+. ...|+ .+|.+
T Consensus 319 wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~Sc-aDDktlrvwdl~~~~cmk~---------------~~ah~-hfvt~ 381 (406)
T KOG0295|consen 319 WDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSC-ADDKTLRVWDLKNLQCMKT---------------LEAHE-HFVTS 381 (406)
T ss_pred EeccCCeEEEEEecccceeeeeEEcCCCeEEEEE-ecCCcEEEEEeccceeeec---------------cCCCc-ceeEE
Confidence 999999877654 5443 4444433 3445567788777665543 33344 67899
Q ss_pred EEc-CCCCeeeeecCCCCCChhHH
Q 008510 201 VDI-GDGEPTRKLPYNRSDNPYDA 223 (563)
Q Consensus 201 vd~-~dg~~~~~~~~n~~~~~w~~ 223 (563)
+|+ .+--.+.+++.|.+.++|..
T Consensus 382 lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 382 LDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred EecCCCCceEEeccccceeeeeec
Confidence 999 44456889999999999864
No 25
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.79 E-value=1.6e-19 Score=171.95 Aligned_cols=216 Identities=19% Similarity=0.255 Sum_probs=154.5
Q ss_pred CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCCeEEEEeCCCcEEEEc-C-C---ceeEEEe-cCCcEE
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWK-D-G---VCVQSIE-HPGCVW 74 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g~l~s~s~D~tvriWd-~-~---~~~~~l~-h~~~V~ 74 (563)
+.+.++|||.|.||++||+ +|++++++-+|...|..+.|+ +|+++|||.|+++++|| . . .+.+.+. |.+.|.
T Consensus 246 d~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~-ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVN 324 (499)
T KOG0281|consen 246 DERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS-NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN 324 (499)
T ss_pred cceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe-CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhhee
Confidence 4578999999999999999 999999999999999999998 45999999999999999 2 2 2334444 899999
Q ss_pred EEEEccCCcEEEEeCCCcEEEEEcCCCceeceeeecccccccc------eeEEeeccCCceEEEeCCCCceeeec-ccCC
Q 008510 75 DAKFLENGDIVTACSDGVTRIWTVHSDKVADSLELEAYASELS------QYKLCRKKVGGLKLEDLPGLEALQIP-GTNA 147 (563)
Q Consensus 75 ~v~~~p~g~i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~------~~~~~~~~~~~i~~~d~~~~~~l~~~-g~~d 147 (563)
.|.|... -|++++.|.+|++|+..+..... .+.+|...++ .+.+++++|.+|++||+..+..+.+. ||.+
T Consensus 325 vVdfd~k-yIVsASgDRTikvW~~st~efvR--tl~gHkRGIAClQYr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEe 401 (499)
T KOG0281|consen 325 VVDFDDK-YIVSASGDRTIKVWSTSTCEFVR--TLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE 401 (499)
T ss_pred eeccccc-eEEEecCCceEEEEeccceeeeh--hhhcccccceehhccCeEEEecCCCceEEEEeccccHHHHHHhchHH
Confidence 9999533 39999999999999999987543 4555555443 56678899999999999988887765 7766
Q ss_pred CeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCC-CceeecCcccCcEEEEEcCCCCeeeeecCCCCCChhHH
Q 008510 148 GQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGM-NRPILDGIQYDYVFDVDIGDGEPTRKLPYNRSDNPYDA 223 (563)
Q Consensus 148 g~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~-~~~~~~g~~~d~v~~vd~~dg~~~~~~~~n~~~~~w~~ 223 (563)
-...+-+.....+.-.||.+.+.|+.....-.-+.++. ...... .+.+.||...|.+- .+.+.+.|.++-+|+.
T Consensus 402 LvRciRFd~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv-~hsgRVFrLQFD~f-qIvsssHddtILiWdF 476 (499)
T KOG0281|consen 402 LVRCIRFDNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLV-EHSGRVFRLQFDEF-QIISSSHDDTILIWDF 476 (499)
T ss_pred hhhheeecCceeeeccccceEEEEecccccCCcccccchHHHhhh-hccceeEEEeecce-EEEeccCCCeEEEEEc
Confidence 54444444333334455555566654422211110110 011111 22367888888554 3778888888888885
No 26
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.79 E-value=7.8e-18 Score=174.77 Aligned_cols=241 Identities=17% Similarity=0.221 Sum_probs=179.9
Q ss_pred CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEecC--CcEEE
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIEHP--GCVWD 75 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~h~--~~V~~ 75 (563)
||.++++|+.||.|||||. +|-|+.++..|++.|..+.|+..| .++|+|-||+||.|| .+++.++++.| ....|
T Consensus 361 Dgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~Qfsc 440 (893)
T KOG0291|consen 361 DGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSC 440 (893)
T ss_pred CCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeE
Confidence 6899999999999999999 899999999999999999999999 899999999999999 89999999944 47889
Q ss_pred EEEccCCc-EEEEeCCC-cEEEEEcCCCceeceeeecccccccce--------eEEeeccCCceEEEeCCCC--------
Q 008510 76 AKFLENGD-IVTACSDG-VTRIWTVHSDKVADSLELEAYASELSQ--------YKLCRKKVGGLKLEDLPGL-------- 137 (563)
Q Consensus 76 v~~~p~g~-i~sgs~Dg-~Irvwd~~~~~~~~~~~~~~~~~~v~~--------~~~~~~~~~~i~~~d~~~~-------- 137 (563)
|+..|.|+ +..|+.|. .|.||++.+|+.. +.+.+|+.+|.+ ...+++-|.+|++||+-..
T Consensus 441 vavD~sGelV~AG~~d~F~IfvWS~qTGqll--DiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~ 518 (893)
T KOG0291|consen 441 VAVDPSGELVCAGAQDSFEIFVWSVQTGQLL--DILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLE 518 (893)
T ss_pred EEEcCCCCEEEeeccceEEEEEEEeecCeee--ehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEe
Confidence 99999999 55666665 5999999999844 466778877764 3446778899999998543
Q ss_pred ---ceeeecccCCCeEEEEecCCCeEEEEEecccceEEEeCcEeeC----CCCC-CCceeec-CcccCcEEEEEc-CCCC
Q 008510 138 ---EALQIPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDG----PDDG-MNRPILD-GIQYDYVFDVDI-GDGE 207 (563)
Q Consensus 138 ---~~l~~~g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~----~~~~-~~~~~~~-g~~~d~v~~vd~-~dg~ 207 (563)
.++....++||.-..+..-+ +.+-.||...+. .+|.+-+- .+.. .....-+ .....+...+++ .||+
T Consensus 519 i~sdvl~vsfrPdG~elaVaTld-gqItf~d~~~~~--q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~ 595 (893)
T KOG0291|consen 519 IRSDVLAVSFRPDGKELAVATLD-GQITFFDIKEAV--QVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGK 595 (893)
T ss_pred eccceeEEEEcCCCCeEEEEEec-ceEEEEEhhhce--eeccccchhhccccccccceeehhhcccCCceEEEEEcCCCC
Confidence 34455588888887777776 445578865542 22222111 0000 0111111 111244678888 8999
Q ss_pred eeeeecCCCCCChhHHHHHHHHh-cCCC-cccHHHHHHHHHH
Q 008510 208 PTRKLPYNRSDNPYDAADKWLLK-ENLP-FSYRQQIVEFILQ 247 (563)
Q Consensus 208 ~~~~~~~n~~~~~w~~a~~f~~~-~~l~-~~~~~~v~~fi~~ 247 (563)
.++.++-...+.+|++.++-+.+ -.+. ..-+|.+-+|+-+
T Consensus 596 ~IlAgG~sn~iCiY~v~~~vllkkfqiS~N~sLdg~~efln~ 637 (893)
T KOG0291|consen 596 CILAGGESNSICIYDVPEGVLLKKFQISDNRSLDGVLEFLNR 637 (893)
T ss_pred EEEecCCcccEEEEECchhheeeeEEeccccchhHHHHHhcc
Confidence 99999999999999998775443 2222 2457888888865
No 27
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.78 E-value=7.4e-18 Score=166.68 Aligned_cols=207 Identities=18% Similarity=0.290 Sum_probs=158.5
Q ss_pred CCCEEEEEECCCcEEEEcCCCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEEEE
Q 008510 2 PGVGIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDAK 77 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~v~ 77 (563)
+|..||+|+.||.+|+|+.+|..+.+|..|.++|.++.|+.+| ++++++-|+++.+|| ++.+.|.+. |...-..|.
T Consensus 246 ~G~~LatG~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVd 325 (524)
T KOG0273|consen 246 DGTLLATGSEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVD 325 (524)
T ss_pred CCCeEEEeecCcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceE
Confidence 5899999999999999999999999999999999999999999 999999999999999 889989888 777778899
Q ss_pred EccCCcEEEEeCCCcEEEEEcCCCceeceeeecccccccc--------eeEEeeccCCceEEEeCCCCc-----------
Q 008510 78 FLENGDIVTACSDGVTRIWTVHSDKVADSLELEAYASELS--------QYKLCRKKVGGLKLEDLPGLE----------- 138 (563)
Q Consensus 78 ~~p~g~i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~--------~~~~~~~~~~~i~~~d~~~~~----------- 138 (563)
|-.+..+++++.|+.|+|+-+...+.. ..+.+|.++|. ....+.+.|+++++|......
T Consensus 326 W~~~~~F~ts~td~~i~V~kv~~~~P~--~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hske 403 (524)
T KOG0273|consen 326 WQSNDEFATSSTDGCIHVCKVGEDRPV--KTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKE 403 (524)
T ss_pred EecCceEeecCCCceEEEEEecCCCcc--eeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccc
Confidence 988878999999999999999887633 34445666654 345567889999999964332
Q ss_pred eeeecccCCCe--------EEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCee
Q 008510 139 ALQIPGTNAGQ--------TKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPT 209 (563)
Q Consensus 139 ~l~~~g~~dg~--------~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~ 209 (563)
.+....+++|. ..+....-+..+..||...++ ....+..|. +.|+++++ ++|+++
T Consensus 404 i~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv---------------~i~~f~kH~-~pVysvafS~~g~yl 467 (524)
T KOG0273|consen 404 IYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGV---------------PIHTLMKHQ-EPVYSVAFSPNGRYL 467 (524)
T ss_pred eeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCc---------------eeEeeccCC-CceEEEEecCCCcEE
Confidence 22222222221 112222222344455544332 222355555 77999999 999999
Q ss_pred eeecCCCCCChhHHHHH
Q 008510 210 RKLPYNRSDNPYDAADK 226 (563)
Q Consensus 210 ~~~~~n~~~~~w~~a~~ 226 (563)
+++.+|+.+.+|.+...
T Consensus 468 AsGs~dg~V~iws~~~~ 484 (524)
T KOG0273|consen 468 ASGSLDGCVHIWSTKTG 484 (524)
T ss_pred EecCCCCeeEeccccch
Confidence 99999999999998644
No 28
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.78 E-value=7.8e-18 Score=158.10 Aligned_cols=198 Identities=22% Similarity=0.361 Sum_probs=148.5
Q ss_pred CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC--eEEEEeCCCcEEEEc--CCceeEEEecCCcEEEE
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK--DGVCVQSIEHPGCVWDA 76 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g--~l~s~s~D~tvriWd--~~~~~~~l~h~~~V~~v 76 (563)
|++.++|||.|.+|+.||. +|++++.+++|..+|.++..+.-| .+.|++.||++|+|| ...+++++..+-.+.+|
T Consensus 101 d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv 180 (338)
T KOG0265|consen 101 DGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAV 180 (338)
T ss_pred CCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEE
Confidence 6889999999999999999 999999999999999999855556 688999999999999 78889999877799999
Q ss_pred EEccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccccceeEE--------eeccCCceEEEeCCCC----ceeee-
Q 008510 77 KFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKL--------CRKKVGGLKLEDLPGL----EALQI- 142 (563)
Q Consensus 77 ~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~~~~~--------~~~~~~~i~~~d~~~~----~~l~~- 142 (563)
.|...++ +.+|+-|+.|++||++..... ..+.++.+.+..+.+ +..-+..+++||++.. ..+.+
T Consensus 181 ~f~d~s~qv~sggIdn~ikvWd~r~~d~~--~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if 258 (338)
T KOG0265|consen 181 GFKDTSDQVISGGIDNDIKVWDLRKNDGL--YTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIF 258 (338)
T ss_pred EecccccceeeccccCceeeeccccCcce--EEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEe
Confidence 9999988 999999999999999887633 355666666654443 4556789999999643 21221
Q ss_pred --------------cccCCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCC
Q 008510 143 --------------PGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGE 207 (563)
Q Consensus 143 --------------~g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~ 207 (563)
..++++...-..+.| ..+|+||...+... ..+.||. +-|..++| +.-.
T Consensus 259 ~g~~hnfeknlL~cswsp~~~~i~ags~d-r~vyvwd~~~r~~l---------------yklpGh~-gsvn~~~Fhp~e~ 321 (338)
T KOG0265|consen 259 QGHIHNFEKNLLKCSWSPNGTKITAGSAD-RFVYVWDTTSRRIL---------------YKLPGHY-GSVNEVDFHPTEP 321 (338)
T ss_pred ecchhhhhhhcceeeccCCCCcccccccc-ceEEEeecccccEE---------------EEcCCcc-eeEEEeeecCCCc
Confidence 223333333333333 55678886553211 2244554 78999999 6655
Q ss_pred eeeeecCCCCC
Q 008510 208 PTRKLPYNRSD 218 (563)
Q Consensus 208 ~~~~~~~n~~~ 218 (563)
.+++.+-|+++
T Consensus 322 iils~~sdk~i 332 (338)
T KOG0265|consen 322 IILSCSSDKTI 332 (338)
T ss_pred EEEEeccCcee
Confidence 67777777764
No 29
>PTZ00421 coronin; Provisional
Probab=99.78 E-value=1.6e-17 Score=176.61 Aligned_cols=170 Identities=18% Similarity=0.259 Sum_probs=128.2
Q ss_pred CCCEEEEEECCCcEEEEcC-CC-------ceeEEEecCCCcEEEEEEcCCC--eEEEEeCCCcEEEEc--CCceeEEEe-
Q 008510 2 PGVGIISASHDCTIRLWAL-TG-------QVLMEMVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK--DGVCVQSIE- 68 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g-------~~i~~l~gH~~~V~~v~~~p~g--~l~s~s~D~tvriWd--~~~~~~~l~- 68 (563)
++++|++||.|++|++||+ ++ +++.++.+|...|.+++|+|++ .+++|+.|++|+||| +++.+..+.
T Consensus 87 d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~ 166 (493)
T PTZ00421 87 DPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKC 166 (493)
T ss_pred CCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcC
Confidence 4679999999999999998 43 3678899999999999999975 899999999999999 778888887
Q ss_pred cCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeeccccccc---------ceeEEee----ccCCceEEEeC
Q 008510 69 HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASEL---------SQYKLCR----KKVGGLKLEDL 134 (563)
Q Consensus 69 h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v---------~~~~~~~----~~~~~i~~~d~ 134 (563)
|...|.+++|+|+|. +++|+.|++|++||+++++.... +..+.... ....++. ..++.|++||+
T Consensus 167 h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~t--l~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDl 244 (493)
T PTZ00421 167 HSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSS--VEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDT 244 (493)
T ss_pred CCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEE--EecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeC
Confidence 889999999999999 89999999999999999875432 23332211 1223322 34789999999
Q ss_pred CCCce-eee------------cccCCCeEEEEecCCCeEEEEEecccceEEE
Q 008510 135 PGLEA-LQI------------PGTNAGQTKVVREGDNGVAYSWDMKEQKWDK 173 (563)
Q Consensus 135 ~~~~~-l~~------------~g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~ 173 (563)
+.... +.. ..+.++.+.+..+.+++.+.+|+...+....
T Consensus 245 r~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~ 296 (493)
T PTZ00421 245 RKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTF 296 (493)
T ss_pred CCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEE
Confidence 75421 111 1345666655555445677888887765443
No 30
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.78 E-value=1.2e-18 Score=167.30 Aligned_cols=208 Identities=22% Similarity=0.295 Sum_probs=159.5
Q ss_pred EEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc---CCceeEEEe-cCCcEEEEEE
Q 008510 5 GIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK---DGVCVQSIE-HPGCVWDAKF 78 (563)
Q Consensus 5 ~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd---~~~~~~~l~-h~~~V~~v~~ 78 (563)
..++++.|++|++||. +|++.+.++||++.|.+++|+..| .+++|+.|-.+++|| ..+|+.++. |...|.+|+|
T Consensus 122 ~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f 201 (406)
T KOG0295|consen 122 LVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFF 201 (406)
T ss_pred EEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEE
Confidence 5788999999999999 999999999999999999999999 999999999999999 356666665 8889999999
Q ss_pred ccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccccc--------eeEEeeccCCceEEEeCCCCcee---------
Q 008510 79 LENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELS--------QYKLCRKKVGGLKLEDLPGLEAL--------- 140 (563)
Q Consensus 79 ~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~--------~~~~~~~~~~~i~~~d~~~~~~l--------- 140 (563)
.|.|+ |++++.|.+|+.|+..++-+.. .+.++.+.+. ....+.+.+..+++|-+...+..
T Consensus 202 ~P~gd~ilS~srD~tik~We~~tg~cv~--t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~ 279 (406)
T KOG0295|consen 202 LPLGDHILSCSRDNTIKAWECDTGYCVK--TFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHP 279 (406)
T ss_pred EecCCeeeecccccceeEEecccceeEE--eccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccc
Confidence 99999 9999999999999999997543 3333333322 23335567789999988655111
Q ss_pred ----------------eecccCC-CeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc
Q 008510 141 ----------------QIPGTNA-GQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI 203 (563)
Q Consensus 141 ----------------~~~g~~d-g~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~ 203 (563)
...++.+ |++....+.| ..+.+||+.++.+. ..+.||. .+|-.+.|
T Consensus 280 vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrD-ktIk~wdv~tg~cL---------------~tL~ghd-nwVr~~af 342 (406)
T KOG0295|consen 280 VECIAWAPESSYPSISEATGSTNGGQVLGSGSRD-KTIKIWDVSTGMCL---------------FTLVGHD-NWVRGVAF 342 (406)
T ss_pred eEEEEecccccCcchhhccCCCCCccEEEeeccc-ceEEEEeccCCeEE---------------EEEeccc-ceeeeeEE
Confidence 0012222 3444444444 66778887776332 1244555 88999999
Q ss_pred -CCCCeeeeecCCCCCChhHHHHHHHHhc
Q 008510 204 -GDGEPTRKLPYNRSDNPYDAADKWLLKE 231 (563)
Q Consensus 204 -~dg~~~~~~~~n~~~~~w~~a~~f~~~~ 231 (563)
+.|+++++...|++.++|++..+-|.++
T Consensus 343 ~p~Gkyi~ScaDDktlrvwdl~~~~cmk~ 371 (406)
T KOG0295|consen 343 SPGGKYILSCADDKTLRVWDLKNLQCMKT 371 (406)
T ss_pred cCCCeEEEEEecCCcEEEEEeccceeeec
Confidence 9999999999999999999976655543
No 31
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.77 E-value=4.5e-18 Score=179.45 Aligned_cols=190 Identities=21% Similarity=0.310 Sum_probs=145.3
Q ss_pred CCCCEEEEEECCCcEEEEcC-C--------------------------------C-------------------------
Q 008510 1 MPGVGIISASHDCTIRLWAL-T--------------------------------G------------------------- 22 (563)
Q Consensus 1 ~~g~~l~s~s~DgtIrlWd~-~--------------------------------g------------------------- 22 (563)
.||+++|+||.||.||||.+ + .
T Consensus 277 ~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~~~~~p~~~f~ 356 (712)
T KOG0283|consen 277 HDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSPCVLLPLKAFV 356 (712)
T ss_pred CCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCCccccCCCcccc
Confidence 37999999999999999987 5 0
Q ss_pred ---ceeEEEecCCCcEEEEEEcCCCeEEEEeCCCcEEEEc--CCceeEEEecCCcEEEEEEccCCc--EEEEeCCCcEEE
Q 008510 23 ---QVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWK--DGVCVQSIEHPGCVWDAKFLENGD--IVTACSDGVTRI 95 (563)
Q Consensus 23 ---~~i~~l~gH~~~V~~v~~~p~g~l~s~s~D~tvriWd--~~~~~~~l~h~~~V~~v~~~p~g~--i~sgs~Dg~Irv 95 (563)
+++..|.||.+.|.+++|+.++.|+|+|.|+|||+|+ ...|+.+|.|++.|+||+|+|..+ +++||.||.||+
T Consensus 357 f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRi 436 (712)
T KOG0283|consen 357 FSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRL 436 (712)
T ss_pred ccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEEecCCeeEEEEecccCCCcEeecccccceEE
Confidence 2334678999999999999999999999999999999 889999999999999999999554 999999999999
Q ss_pred EEcCCCceeceeeecccccccceeEEeeccCCceEEEeCCCCceeeecccCCCeEEEEecCCCeEEEEEecccceEEEeC
Q 008510 96 WTVHSDKVADSLELEAYASELSQYKLCRKKVGGLKLEDLPGLEALQIPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLG 175 (563)
Q Consensus 96 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~d~~~~~~l~~~g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g 175 (563)
|++...++.. ..|++ .-+..++..+||+..++++-+ +.|+.|+....+...-.
T Consensus 437 WsI~d~~Vv~-------------------------W~Dl~-~lITAvcy~PdGk~avIGt~~-G~C~fY~t~~lk~~~~~ 489 (712)
T KOG0283|consen 437 WSISDKKVVD-------------------------WNDLR-DLITAVCYSPDGKGAVIGTFN-GYCRFYDTEGLKLVSDF 489 (712)
T ss_pred eecCcCeeEe-------------------------ehhhh-hhheeEEeccCCceEEEEEec-cEEEEEEccCCeEEEee
Confidence 9999877332 22333 112233477888888888776 66777777666555555
Q ss_pred cEeeCCCCCCCceeecCcccCcEEEEEcCCCC--eeeeecCCCCCChhHHHH
Q 008510 176 EVVDGPDDGMNRPILDGIQYDYVFDVDIGDGE--PTRKLPYNRSDNPYDAAD 225 (563)
Q Consensus 176 ~v~~~~~~~~~~~~~~g~~~d~v~~vd~~dg~--~~~~~~~n~~~~~w~~a~ 225 (563)
.+.... ++-..|+ .|..+.+-.|. .++-.+.|..+++|+..+
T Consensus 490 ~I~~~~-----~Kk~~~~---rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~ 533 (712)
T KOG0283|consen 490 HIRLHN-----KKKKQGK---RITGLQFFPGDPDEVLVTSNDSRIRIYDGRD 533 (712)
T ss_pred eEeecc-----CccccCc---eeeeeEecCCCCCeEEEecCCCceEEEeccc
Confidence 554432 2223333 47777773333 488889999999999843
No 32
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.77 E-value=6e-17 Score=184.61 Aligned_cols=214 Identities=17% Similarity=0.225 Sum_probs=151.9
Q ss_pred CCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcC-CC-eEEEEeCCCcEEEEc--CCceeEEEecCCcEEEEE
Q 008510 3 GVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHA-SG-LIVSGSEDRFAKIWK--DGVCVQSIEHPGCVWDAK 77 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p-~g-~l~s~s~D~tvriWd--~~~~~~~l~h~~~V~~v~ 77 (563)
+.++++|+.||+|++||+ +++.+..+.+|.+.|++++|+| ++ .++|||.|++|++|| ++.++.++.+...|+++.
T Consensus 545 ~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~ 624 (793)
T PLN00181 545 KSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQ 624 (793)
T ss_pred CCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEE
Confidence 578999999999999999 7889999999999999999997 56 899999999999999 788888888667899999
Q ss_pred Ecc-CCc-EEEEeCCCcEEEEEcCCCceeceeeeccccccc-------ceeEEeeccCCceEEEeCCCC------cee-e
Q 008510 78 FLE-NGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASEL-------SQYKLCRKKVGGLKLEDLPGL------EAL-Q 141 (563)
Q Consensus 78 ~~p-~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v-------~~~~~~~~~~~~i~~~d~~~~------~~l-~ 141 (563)
|++ +|. +++|+.||.|++||+++.+. ....+.+|...+ ....++++.|+.|++||++.. ..+ .
T Consensus 625 ~~~~~g~~latgs~dg~I~iwD~~~~~~-~~~~~~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~ 703 (793)
T PLN00181 625 FPSESGRSLAFGSADHKVYYYDLRNPKL-PLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHS 703 (793)
T ss_pred EeCCCCCEEEEEeCCCeEEEEECCCCCc-cceEecCCCCCEEEEEEeCCCEEEEEECCCEEEEEeCCCCccccCCcceEE
Confidence 965 677 99999999999999987652 112233333332 244567788999999999742 111 1
Q ss_pred ecc----------cCCCeEEEEecCCCeEEEEEecccce--EEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCe
Q 008510 142 IPG----------TNAGQTKVVREGDNGVAYSWDMKEQK--WDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEP 208 (563)
Q Consensus 142 ~~g----------~~dg~~~l~~~~~~~~~~~wd~~~~~--w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~ 208 (563)
..| +++|.+.+..+.+ +.+++|+..... |.... ............++. +.|.++.| ++|..
T Consensus 704 ~~gh~~~i~~v~~s~~~~~lasgs~D-~~v~iw~~~~~~~~~s~~~----~~~~~~~~~~~~~~~-~~V~~v~ws~~~~~ 777 (793)
T PLN00181 704 FMGHTNVKNFVGLSVSDGYIATGSET-NEVFVYHKAFPMPVLSYKF----KTIDPVSGLEVDDAS-QFISSVCWRGQSST 777 (793)
T ss_pred EcCCCCCeeEEEEcCCCCEEEEEeCC-CEEEEEECCCCCceEEEec----ccCCcccccccCCCC-cEEEEEEEcCCCCe
Confidence 113 3345444444433 566777754331 11110 000000011122222 67999999 89999
Q ss_pred eeeecCCCCCChhHH
Q 008510 209 TRKLPYNRSDNPYDA 223 (563)
Q Consensus 209 ~~~~~~n~~~~~w~~ 223 (563)
++.+..|+++++|+.
T Consensus 778 lva~~~dG~I~i~~~ 792 (793)
T PLN00181 778 LVAANSTGNIKILEM 792 (793)
T ss_pred EEEecCCCcEEEEec
Confidence 999999999999974
No 33
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.75 E-value=7.4e-18 Score=174.76 Aligned_cols=178 Identities=21% Similarity=0.347 Sum_probs=137.5
Q ss_pred CEEEEEECCCcEEEEcCCC----------ceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-c
Q 008510 4 VGIISASHDCTIRLWALTG----------QVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-H 69 (563)
Q Consensus 4 ~~l~s~s~DgtIrlWd~~g----------~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h 69 (563)
.+|+++|.|+++++|++.+ .+..+...|...|+||+++|+. .++|||.|++++||+ +.....++. |
T Consensus 425 sffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH 504 (775)
T KOG0319|consen 425 SFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGH 504 (775)
T ss_pred cEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCC
Confidence 6899999999999999833 1122446799999999999998 999999999999999 778888898 9
Q ss_pred CCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccccceeEEeeccCCceEEEeCCCCceeeecccCCC
Q 008510 70 PGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLCRKKVGGLKLEDLPGLEALQIPGTNAG 148 (563)
Q Consensus 70 ~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~d~~~~~~l~~~g~~dg 148 (563)
+..||||.|+|+.. ++|+|.|++|+||.+.+..+.. .+.+|. ..++...+-.+|
T Consensus 505 ~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClk--T~eGH~-----------------------~aVlra~F~~~~ 559 (775)
T KOG0319|consen 505 TRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLK--TFEGHT-----------------------SAVLRASFIRNG 559 (775)
T ss_pred ccceEEEEeccccceeEeccCCceEEEEEeccceeee--eecCcc-----------------------ceeEeeeeeeCC
Confidence 99999999999988 8999999999999999987442 222332 233444444455
Q ss_pred eEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeeeecCCCCCChhHH
Q 008510 149 QTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRKLPYNRSDNPYDA 223 (563)
Q Consensus 149 ~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~~~~~w~~ 223 (563)
...+..+. ++.+.+|+..++.+. +.+++|+ |.|+.... +.+..+++++-|+.+..|.-
T Consensus 560 ~qliS~~a-dGliKlWnikt~eC~---------------~tlD~H~-DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD 618 (775)
T KOG0319|consen 560 KQLISAGA-DGLIKLWNIKTNECE---------------MTLDAHN-DRVWALSVSPLLDMFVTGGGDGRIIFWKD 618 (775)
T ss_pred cEEEeccC-CCcEEEEeccchhhh---------------hhhhhcc-ceeEEEeecCccceeEecCCCeEEEEeec
Confidence 44444444 467778887666433 2367777 88998888 77778889999998888853
No 34
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.75 E-value=4.3e-18 Score=178.19 Aligned_cols=101 Identities=30% Similarity=0.542 Sum_probs=97.0
Q ss_pred CCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEEEE
Q 008510 3 GVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDAK 77 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~v~ 77 (563)
|-+|||||.|+|.|+|+. ...+++.+.||-+-|.|++|+|++ ++++||.|++||+|| +|.+++.|. |.++|.+++
T Consensus 505 GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~ 584 (707)
T KOG0263|consen 505 GYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALA 584 (707)
T ss_pred ceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEE
Confidence 678999999999999999 778999999999999999999999 999999999999999 999999999 999999999
Q ss_pred EccCCc-EEEEeCCCcEEEEEcCCCce
Q 008510 78 FLENGD-IVTACSDGVTRIWTVHSDKV 103 (563)
Q Consensus 78 ~~p~g~-i~sgs~Dg~Irvwd~~~~~~ 103 (563)
|+|+|+ +++|+.||.|.+||+.+++.
T Consensus 585 ~Sp~Gr~LaSg~ed~~I~iWDl~~~~~ 611 (707)
T KOG0263|consen 585 FSPCGRYLASGDEDGLIKIWDLANGSL 611 (707)
T ss_pred EcCCCceEeecccCCcEEEEEcCCCcc
Confidence 999999 99999999999999999873
No 35
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=9.5e-17 Score=148.89 Aligned_cols=207 Identities=17% Similarity=0.223 Sum_probs=145.1
Q ss_pred CCCEEEEEECCCcEEEEcC---CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc-----CCceeEEEe-cCC
Q 008510 2 PGVGIISASHDCTIRLWAL---TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-----DGVCVQSIE-HPG 71 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~---~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd-----~~~~~~~l~-h~~ 71 (563)
.|++|++||.|+|+-||.- +.+|+.+++||...|.|++|+++| +||+||+|++|.||. ..+|+..++ |..
T Consensus 72 ~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~Htq 151 (312)
T KOG0645|consen 72 HGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQ 151 (312)
T ss_pred CCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccc
Confidence 4889999999999999987 457999999999999999999999 999999999999998 346777888 999
Q ss_pred cEEEEEEccCCc-EEEEeCCCcEEEEEcC-CCceeceeeecccccccc--------eeEEeeccCCceEEEeCC------
Q 008510 72 CVWDAKFLENGD-IVTACSDGVTRIWTVH-SDKVADSLELEAYASELS--------QYKLCRKKVGGLKLEDLP------ 135 (563)
Q Consensus 72 ~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~-~~~~~~~~~~~~~~~~v~--------~~~~~~~~~~~i~~~d~~------ 135 (563)
.|-.|.|+|..+ ++++|.|++||+|.-. .+.......+..+...|- ....+...++++++|...
T Consensus 152 DVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~~~ 231 (312)
T KOG0645|consen 152 DVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLSGM 231 (312)
T ss_pred cccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCcchh
Confidence 999999999877 8999999999999987 555566667777764433 344466778899999843
Q ss_pred -CCceeeecccCCCeEEEEecCCCeE-EEEEec--ccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-C-CCCee
Q 008510 136 -GLEALQIPGTNAGQTKVVREGDNGV-AYSWDM--KEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-G-DGEPT 209 (563)
Q Consensus 136 -~~~~l~~~g~~dg~~~l~~~~~~~~-~~~wd~--~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~-dg~~~ 209 (563)
.++.+.++.. +|.+. ..++|+.+ +|.-+. ....|..+... -..|+ .-|.+|.+ + .+..+
T Consensus 232 ~sr~~Y~v~W~-~~~Ia-S~ggD~~i~lf~~s~~~d~p~~~l~~~~------------~~aHe-~dVNsV~w~p~~~~~L 296 (312)
T KOG0645|consen 232 HSRALYDVPWD-NGVIA-SGGGDDAIRLFKESDSPDEPSWNLLAKK------------EGAHE-VDVNSVQWNPKVSNRL 296 (312)
T ss_pred cccceEeeeec-ccceE-eccCCCEEEEEEecCCCCCchHHHHHhh------------hcccc-cccceEEEcCCCCCce
Confidence 1222222221 22211 11122222 211110 01122211111 11244 45889999 5 35568
Q ss_pred eeecCCCCCChhHH
Q 008510 210 RKLPYNRSDNPYDA 223 (563)
Q Consensus 210 ~~~~~n~~~~~w~~ 223 (563)
++.+.|+.++.|..
T Consensus 297 ~s~~DDG~v~~W~l 310 (312)
T KOG0645|consen 297 ASGGDDGIVNFWEL 310 (312)
T ss_pred eecCCCceEEEEEe
Confidence 89999999999975
No 36
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.75 E-value=2.8e-17 Score=158.69 Aligned_cols=209 Identities=22% Similarity=0.279 Sum_probs=153.5
Q ss_pred CCEEEEEECCCcEEEEcCCCceeEEEecCCCcEEEEEEcC-CC---eEEEEeCCCcEEEEc--CCc----eeEEE-ecCC
Q 008510 3 GVGIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHA-SG---LIVSGSEDRFAKIWK--DGV----CVQSI-EHPG 71 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~~g~~i~~l~gH~~~V~~v~~~p-~g---~l~s~s~D~tvriWd--~~~----~~~~l-~h~~ 71 (563)
++.|+||+.||++|+||..|++..++.||+++|.++++.- +. .|+++|.|+++++|. .++ +++.- .|.+
T Consensus 115 ~~~IltgsYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~ 194 (423)
T KOG0313|consen 115 SKWILTGSYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKR 194 (423)
T ss_pred CceEEEeecCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhccccc
Confidence 5789999999999999999999999999999999888753 32 699999999999998 222 22222 3999
Q ss_pred cEEEEEEccCCc-EEEEeCCCcEEEEEcCCC-----------------------ceeceeeeccccccccee-------E
Q 008510 72 CVWDAKFLENGD-IVTACSDGVTRIWTVHSD-----------------------KVADSLELEAYASELSQY-------K 120 (563)
Q Consensus 72 ~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~-----------------------~~~~~~~~~~~~~~v~~~-------~ 120 (563)
.|-+|+..++|. +++|+.|.+|++|+..+. ...+...+.+|.+.|... .
T Consensus 195 ~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~ 274 (423)
T KOG0313|consen 195 SVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDATVI 274 (423)
T ss_pred ceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCCCce
Confidence 999999999998 999999999999992211 112334556676666644 4
Q ss_pred EeeccCCceEEEeCCCCceeeec----------ccCCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceee
Q 008510 121 LCRKKVGGLKLEDLPGLEALQIP----------GTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPIL 190 (563)
Q Consensus 121 ~~~~~~~~i~~~d~~~~~~l~~~----------g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~ 190 (563)
++.+.|.+|+.||+......... -++... ++..+..+..+..||.+.+. |.+ -++.|
T Consensus 275 yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~-Ll~~gssdr~irl~DPR~~~----gs~--------v~~s~ 341 (423)
T KOG0313|consen 275 YSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSK-LLASGSSDRHIRLWDPRTGD----GSV--------VSQSL 341 (423)
T ss_pred EeecccceEEEEEeecccceeeeecCcceeEeecccccc-eeeecCCCCceeecCCCCCC----Cce--------eEEee
Confidence 46778899999999766443222 222222 33333444667788876651 222 34568
Q ss_pred cCcccCcEEEEEc-C-CCCeeeeecCCCCCChhHHHH
Q 008510 191 DGIQYDYVFDVDI-G-DGEPTRKLPYNRSDNPYDAAD 225 (563)
Q Consensus 191 ~g~~~d~v~~vd~-~-dg~~~~~~~~n~~~~~w~~a~ 225 (563)
.||. .+|-.+.+ + +--...+++||+++++|++..
T Consensus 342 ~gH~-nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS 377 (423)
T KOG0313|consen 342 IGHK-NWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRS 377 (423)
T ss_pred ecch-hhhhheecCCCCceEEEEEecCCeEEEEEecc
Confidence 8998 69999999 4 444578999999999999954
No 37
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.74 E-value=5.9e-17 Score=156.50 Aligned_cols=184 Identities=18% Similarity=0.238 Sum_probs=139.0
Q ss_pred CCCEEEEEECCCcEEEEcC--C------------------------CceeEEEecCCCcEEEEEEcCCCeEEEEeCCCcE
Q 008510 2 PGVGIISASHDCTIRLWAL--T------------------------GQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFA 55 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~--~------------------------g~~i~~l~gH~~~V~~v~~~p~g~l~s~s~D~tv 55 (563)
+|.+|+|||.|.+|++|+. + +.++-++.||+.+|.+|-|++.+.+.|+|.|.||
T Consensus 204 sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTI 283 (423)
T KOG0313|consen 204 SGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTI 283 (423)
T ss_pred CCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCCCceEeecccceE
Confidence 5889999999999999992 1 1356678999999999999997699999999999
Q ss_pred EEEc--CCceeEEEecCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCce-eceeeecccccccceeEEeeccCCceEE
Q 008510 56 KIWK--DGVCVQSIEHPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKV-ADSLELEAYASELSQYKLCRKKVGGLKL 131 (563)
Q Consensus 56 riWd--~~~~~~~l~h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~i~~ 131 (563)
|.|| ++.++.++..+....|++++|..+ |++||.|..||+||.|++.- .....+-+|.+-|..+
T Consensus 284 k~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssv------------ 351 (423)
T KOG0313|consen 284 KVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSV------------ 351 (423)
T ss_pred EEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhhe------------
Confidence 9999 899999998888999999999888 89999999999999998751 1222333333322221
Q ss_pred EeCCCCceeeecccCCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEcCCCCeeee
Q 008510 132 EDLPGLEALQIPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDIGDGEPTRK 211 (563)
Q Consensus 132 ~d~~~~~~l~~~g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~~dg~~~~~ 211 (563)
..++...+.++....++.+.+||.+.- |. ....+.||. |.|+++|+.+|..+++
T Consensus 352 -----------kwsp~~~~~~~S~S~D~t~klWDvRS~-k~-------------plydI~~h~-DKvl~vdW~~~~~IvS 405 (423)
T KOG0313|consen 352 -----------KWSPTNEFQLVSGSYDNTVKLWDVRST-KA-------------PLYDIAGHN-DKVLSVDWNEGGLIVS 405 (423)
T ss_pred -----------ecCCCCceEEEEEecCCeEEEEEeccC-CC-------------cceeeccCC-ceEEEEeccCCceEEe
Confidence 134455555555555566666775332 11 122344554 9999999988888999
Q ss_pred ecCCCCCChhHH
Q 008510 212 LPYNRSDNPYDA 223 (563)
Q Consensus 212 ~~~n~~~~~w~~ 223 (563)
++.|.+++++.-
T Consensus 406 GGaD~~l~i~~~ 417 (423)
T KOG0313|consen 406 GGADNKLRIFKG 417 (423)
T ss_pred ccCcceEEEecc
Confidence 999998887764
No 38
>PTZ00420 coronin; Provisional
Probab=99.74 E-value=2.9e-16 Score=167.93 Aligned_cols=132 Identities=22% Similarity=0.315 Sum_probs=104.9
Q ss_pred CCEEEEEECCCcEEEEcC-CC--------ceeEEEecCCCcEEEEEEcCCC--eEEEEeCCCcEEEEc--CCceeEEEec
Q 008510 3 GVGIISASHDCTIRLWAL-TG--------QVLMEMVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK--DGVCVQSIEH 69 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~-~g--------~~i~~l~gH~~~V~~v~~~p~g--~l~s~s~D~tvriWd--~~~~~~~l~h 69 (563)
+.+|+|||.||+|++||+ ++ +++..+.+|...|.+++|+|++ .++|+|.|++|+||| +++.+..+.|
T Consensus 87 ~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~ 166 (568)
T PTZ00420 87 SEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINM 166 (568)
T ss_pred CCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEec
Confidence 679999999999999998 43 2455788999999999999988 468999999999999 6777777778
Q ss_pred CCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeeccccccc-------------ceeEEeeccC----CceEE
Q 008510 70 PGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASEL-------------SQYKLCRKKV----GGLKL 131 (563)
Q Consensus 70 ~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v-------------~~~~~~~~~~----~~i~~ 131 (563)
+..|.+++|+|+|. +++++.|+.|++||+++++... .+..|...+ ....++.+.+ +.|++
T Consensus 167 ~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~--tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkL 244 (568)
T PTZ00420 167 PKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIAS--SFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKL 244 (568)
T ss_pred CCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEE--EEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEE
Confidence 78999999999999 8889999999999999987543 334444321 1234444433 36999
Q ss_pred EeCCC
Q 008510 132 EDLPG 136 (563)
Q Consensus 132 ~d~~~ 136 (563)
||++.
T Consensus 245 WDlr~ 249 (568)
T PTZ00420 245 WDLKN 249 (568)
T ss_pred EECCC
Confidence 99884
No 39
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=2.4e-16 Score=146.17 Aligned_cols=184 Identities=23% Similarity=0.370 Sum_probs=131.2
Q ss_pred CCEEEEEECCCcEEEEcCC-C---ceeEEE-ecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc----CCceeEEEe-cCC
Q 008510 3 GVGIISASHDCTIRLWALT-G---QVLMEM-VGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK----DGVCVQSIE-HPG 71 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~~-g---~~i~~l-~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd----~~~~~~~l~-h~~ 71 (563)
|..|+|||.|..||+|+.. + .|...+ .+|+..|.+|+|+|.| +++++|.|.++-||. ..+|+.++. |..
T Consensus 27 g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEn 106 (312)
T KOG0645|consen 27 GVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHEN 106 (312)
T ss_pred ceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeecccc
Confidence 5589999999999999994 3 344444 3799999999999999 999999999999998 458888898 999
Q ss_pred cEEEEEEccCCc-EEEEeCCCcEEEEEcCCCcee-ceeeecccccccceeEEeeccCCceEEEeCCCCceeeecccCCCe
Q 008510 72 CVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVA-DSLELEAYASELSQYKLCRKKVGGLKLEDLPGLEALQIPGTNAGQ 149 (563)
Q Consensus 72 ~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~i~~~d~~~~~~l~~~g~~dg~ 149 (563)
.|-||+|+++|. +|+++.|..|-||....+... ....++.|...|... +|. +.+.+....+-|..
T Consensus 107 EVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V-----------~WH--Pt~dlL~S~SYDnT 173 (312)
T KOG0645|consen 107 EVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHV-----------IWH--PTEDLLFSCSYDNT 173 (312)
T ss_pred ceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEE-----------EEc--CCcceeEEeccCCe
Confidence 999999999999 999999999999999865421 122333333333222 232 11122222222333
Q ss_pred EEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeeeecCCCCCChhHH
Q 008510 150 TKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRKLPYNRSDNPYDA 223 (563)
Q Consensus 150 ~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~~~~~w~~ 223 (563)
+++++..+ ...|..+ +.++||+ ..|++++| +.|..+.+.+.|.++++|..
T Consensus 174 Ik~~~~~~----------dddW~c~-------------~tl~g~~-~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~ 224 (312)
T KOG0645|consen 174 IKVYRDED----------DDDWECV-------------QTLDGHE-NTVWSLAFDNIGSRLVSCSDDGTVSIWRL 224 (312)
T ss_pred EEEEeecC----------CCCeeEE-------------EEecCcc-ceEEEEEecCCCceEEEecCCcceEeeee
Confidence 33332221 3455533 3355665 57899999 77888899999999998874
No 40
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.74 E-value=2.5e-16 Score=145.78 Aligned_cols=225 Identities=17% Similarity=0.203 Sum_probs=165.4
Q ss_pred CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEecCCcEEEEE
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIEHPGCVWDAK 77 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~h~~~V~~v~ 77 (563)
+|++|+||+.|.++.+|-. +|+.+.++.||++.|+|++++-+. .++||+.|.++++|| +|+++.++..+..|+.+.
T Consensus 21 eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~ 100 (327)
T KOG0643|consen 21 EGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVD 100 (327)
T ss_pred CCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEe
Confidence 6899999999999999988 999999999999999999999888 999999999999999 999999999999999999
Q ss_pred EccCCcEEEEeCC------CcEEEEEcCCCc--eecee---eecc--------cccccceeEEeeccCCceEEEeCCCCc
Q 008510 78 FLENGDIVTACSD------GVTRIWTVHSDK--VADSL---ELEA--------YASELSQYKLCRKKVGGLKLEDLPGLE 138 (563)
Q Consensus 78 ~~p~g~i~sgs~D------g~Irvwd~~~~~--~~~~~---~~~~--------~~~~v~~~~~~~~~~~~i~~~d~~~~~ 138 (563)
|+++|.++..+.| +.|.+||++... ....+ .+.. .-......++++..+|.|..||.+.+.
T Consensus 101 F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~ 180 (327)
T KOG0643|consen 101 FSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGK 180 (327)
T ss_pred eccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCc
Confidence 9999996555554 569999998432 11111 1111 122345778899999999999998763
Q ss_pred eeee------------cccCCCeEEEEecCCCeEEEEEecccceEEEeC----------------cEeeCCCCCC-----
Q 008510 139 ALQI------------PGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLG----------------EVVDGPDDGM----- 185 (563)
Q Consensus 139 ~l~~------------~g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g----------------~v~~~~~~~~----- 185 (563)
.+.. ..++|..+.+..+.| ..+.+||..+-...+.. .|+.+.+..+
T Consensus 181 ~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~D-ttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTT 259 (327)
T KOG0643|consen 181 ELVDSDEEHSSKINDLQFSRDRTYFITGSKD-TTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTT 259 (327)
T ss_pred eeeechhhhccccccccccCCcceEEecccC-ccceeeeccceeeEEEeeecccccceecccccceEEecCCceeeeeee
Confidence 3321 245666666665555 66778887655443321 1111111100
Q ss_pred -----C--------------ceeecCcccCcEEEEEc-CCCCeeeeecCCCCCChhHHHHHHH
Q 008510 186 -----N--------------RPILDGIQYDYVFDVDI-GDGEPTRKLPYNRSDNPYDAADKWL 228 (563)
Q Consensus 186 -----~--------------~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~~~~~w~~a~~f~ 228 (563)
+ ..-++||- +-|.+|++ |+|+...++.-|+.+++...++.|.
T Consensus 260 T~~r~GKFEArFyh~i~eEEigrvkGHF-GPINsvAfhPdGksYsSGGEDG~VR~h~Fd~~YF 321 (327)
T KOG0643|consen 260 TSTRAGKFEARFYHLIFEEEIGRVKGHF-GPINSVAFHPDGKSYSSGGEDGYVRLHHFDSNYF 321 (327)
T ss_pred ecccccchhhhHHHHHHHHHhccccccc-cCcceeEECCCCcccccCCCCceEEEEEeccchh
Confidence 1 11144553 77899999 9999999999999888887666554
No 41
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.73 E-value=8.8e-17 Score=146.18 Aligned_cols=163 Identities=21% Similarity=0.371 Sum_probs=132.1
Q ss_pred CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc----CCceeEEEe-cCCcEE
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK----DGVCVQSIE-HPGCVW 74 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd----~~~~~~~l~-h~~~V~ 74 (563)
|...|++|+.|..|.+||+ +|+.++.+.||.+.|..|+|+.+. .++|||.|.++|+|| +.+++|.+. ..+.|.
T Consensus 70 Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~ 149 (307)
T KOG0316|consen 70 DNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVS 149 (307)
T ss_pred cccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCcee
Confidence 4567999999999999999 999999999999999999999988 999999999999999 567888888 677999
Q ss_pred EEEEccCCcEEEEeCCCcEEEEEcCCCceeceeeecccccccc--------eeEEeeccCCceEEEeCCCCceeeec-cc
Q 008510 75 DAKFLENGDIVTACSDGVTRIWTVHSDKVADSLELEAYASELS--------QYKLCRKKVGGLKLEDLPGLEALQIP-GT 145 (563)
Q Consensus 75 ~v~~~p~g~i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~--------~~~~~~~~~~~i~~~d~~~~~~l~~~-g~ 145 (563)
+|..... .|++|+.||++|.||+|.|+... ..+..++. .+.+.+.-++.+++.|-.+++.+... ||
T Consensus 150 Si~v~~h-eIvaGS~DGtvRtydiR~G~l~s----Dy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGh 224 (307)
T KOG0316|consen 150 SIDVAEH-EIVAGSVDGTVRTYDIRKGTLSS----DYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGH 224 (307)
T ss_pred EEEeccc-EEEeeccCCcEEEEEeecceeeh----hhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhccc
Confidence 9988532 49999999999999999998432 11222222 44556667789999999988888776 77
Q ss_pred CCCeE-----------EEEecCCCeEEEEEecccc
Q 008510 146 NAGQT-----------KVVREGDNGVAYSWDMKEQ 169 (563)
Q Consensus 146 ~dg~~-----------~l~~~~~~~~~~~wd~~~~ 169 (563)
+.-++ .++.++.++.+|.||....
T Consensus 225 kn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~ 259 (307)
T KOG0316|consen 225 KNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDE 259 (307)
T ss_pred ccceeeeeeeecccceeEEeccCCceEEEEEeccc
Confidence 76554 4556666778888886544
No 42
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=3.1e-17 Score=149.91 Aligned_cols=198 Identities=21% Similarity=0.316 Sum_probs=145.5
Q ss_pred CCEEEEEECCCcEEEEcC--CC--ceeEEEecCCCcEEEEEEc-C-CC-eEEEEeCCCcEEEEc--CCcee--EEEe-cC
Q 008510 3 GVGIISASHDCTIRLWAL--TG--QVLMEMVGHTAIVYSIDSH-A-SG-LIVSGSEDRFAKIWK--DGVCV--QSIE-HP 70 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~--~g--~~i~~l~gH~~~V~~v~~~-p-~g-~l~s~s~D~tvriWd--~~~~~--~~l~-h~ 70 (563)
|.+|+|||.|++|||+.. ++ +.+.+|.||.++|+.++|. | -| .|+||+.||.|.||. .++-. .... |.
T Consensus 23 gkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~ 102 (299)
T KOG1332|consen 23 GKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHS 102 (299)
T ss_pred cceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhc
Confidence 789999999999999999 44 6889999999999999995 4 46 999999999999999 44322 2233 88
Q ss_pred CcEEEEEEccCCc---EEEEeCCCcEEEEEcCCC-ceeceeeecccccccceeEEeeccCCceEEEeCCCCceeeecccC
Q 008510 71 GCVWDAKFLENGD---IVTACSDGVTRIWTVHSD-KVADSLELEAYASELSQYKLCRKKVGGLKLEDLPGLEALQIPGTN 146 (563)
Q Consensus 71 ~~V~~v~~~p~g~---i~sgs~Dg~Irvwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~d~~~~~~l~~~g~~ 146 (563)
.+|.+|+|-|.+. ++++|+||.|+|++.++. .........+|...+.....+.... + ..+...+..
T Consensus 103 ~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~--------~--g~~~~~~~~ 172 (299)
T KOG1332|consen 103 ASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASA--------P--GSLVDQGPA 172 (299)
T ss_pred ccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCC--------C--ccccccCcc
Confidence 9999999999765 799999999999999876 3222233344554454444222111 0 012222334
Q ss_pred CCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCC----CeeeeecCCCCCChh
Q 008510 147 AGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDG----EPTRKLPYNRSDNPY 221 (563)
Q Consensus 147 dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg----~~~~~~~~n~~~~~w 221 (563)
++..+++..+.+..+.+|....+.|..- ..++||. |+|.+|.+ |.- ..+++.+.|+++-+|
T Consensus 173 ~~~krlvSgGcDn~VkiW~~~~~~w~~e-------------~~l~~H~-dwVRDVAwaP~~gl~~s~iAS~SqDg~viIw 238 (299)
T KOG1332|consen 173 AKVKRLVSGGCDNLVKIWKFDSDSWKLE-------------RTLEGHK-DWVRDVAWAPSVGLPKSTIASCSQDGTVIIW 238 (299)
T ss_pred cccceeeccCCccceeeeecCCcchhhh-------------hhhhhcc-hhhhhhhhccccCCCceeeEEecCCCcEEEE
Confidence 5567888888888889999888877632 2366776 99999998 432 458899999999888
Q ss_pred HHH
Q 008510 222 DAA 224 (563)
Q Consensus 222 ~~a 224 (563)
...
T Consensus 239 t~~ 241 (299)
T KOG1332|consen 239 TKD 241 (299)
T ss_pred Eec
Confidence 864
No 43
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=4.7e-17 Score=171.34 Aligned_cols=206 Identities=20% Similarity=0.299 Sum_probs=137.9
Q ss_pred CCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEEEE
Q 008510 3 GVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDAK 77 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~v~ 77 (563)
+.+|+|||.|..||+|+. +.+|+-++.||-++|..+.|++.- .++|+|.|.|||||+ +++|+..++ |...|.|..
T Consensus 63 qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAq 142 (1202)
T KOG0292|consen 63 QPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQ 142 (1202)
T ss_pred CCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeec
Confidence 468999999999999999 889999999999999999999987 899999999999999 999999999 999999999
Q ss_pred EccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccccceeEEe----eccCCceEEEeCCCC--ceeeecccCCCeE
Q 008510 78 FLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLC----RKKVGGLKLEDLPGL--EALQIPGTNAGQT 150 (563)
Q Consensus 78 ~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~i~~~d~~~~--~~l~~~g~~dg~~ 150 (563)
|+|..+ |+++|.|.+|||||+..-|.-...+- ++++.+...... ++.| .|-..-+.|. .+--..+|+.-.
T Consensus 143 FhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg-~~e~~~~~~~~~~dLfg~~D-aVVK~VLEGHDRGVNwaAfhpTlp- 219 (1202)
T KOG0292|consen 143 FHPTEDLIVSASLDQTVRVWDISGLRKKNKAPG-SLEDQMRGQQGNSDLFGQTD-AVVKHVLEGHDRGVNWAAFHPTLP- 219 (1202)
T ss_pred cCCccceEEEecccceEEEEeecchhccCCCCC-CchhhhhccccchhhcCCcC-eeeeeeecccccccceEEecCCcc-
Confidence 999877 99999999999999875442211111 222222211110 0111 1111111110 011111222111
Q ss_pred EEEecCCCeEEEEEecc-cceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeeeecCCCCCChhHHHHH
Q 008510 151 KVVREGDNGVAYSWDMK-EQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRKLPYNRSDNPYDAADK 226 (563)
Q Consensus 151 ~l~~~~~~~~~~~wd~~-~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~~~~~w~~a~~ 226 (563)
.+++++|+..+.+|.++ +..|+.- . -.|| |+.|-++-| +....+++-+-|+++++|+...+
T Consensus 220 liVSG~DDRqVKlWrmnetKaWEvD-t-------------crgH-~nnVssvlfhp~q~lIlSnsEDksirVwDm~kR 282 (1202)
T KOG0292|consen 220 LIVSGADDRQVKLWRMNETKAWEVD-T-------------CRGH-YNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKR 282 (1202)
T ss_pred eEEecCCcceeeEEEeccccceeeh-h-------------hhcc-cCCcceEEecCccceeEecCCCccEEEEecccc
Confidence 23344444555666654 4557632 1 1233 466777777 55667888888888888887644
No 44
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.73 E-value=2.4e-16 Score=147.61 Aligned_cols=181 Identities=18% Similarity=0.305 Sum_probs=144.3
Q ss_pred CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc-C-C------ceeEEEe-cC
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-D-G------VCVQSIE-HP 70 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd-~-~------~~~~~l~-h~ 70 (563)
|.++++|+|.||.+.|||. +...++-+.-...+|..++|+|.| .+++||-|..+.||+ + . +..+.+. |+
T Consensus 66 Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHt 145 (343)
T KOG0286|consen 66 DSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHT 145 (343)
T ss_pred CcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCcc
Confidence 6789999999999999999 888788888889999999999999 899999999999999 2 2 2334455 99
Q ss_pred CcEEEEEEccCCcEEEEeCCCcEEEEEcCCCceeceeeecccccccceeEEeeccCCceEEEeCCCCceeeecccC-CCe
Q 008510 71 GCVWDAKFLENGDIVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLCRKKVGGLKLEDLPGLEALQIPGTN-AGQ 149 (563)
Q Consensus 71 ~~V~~v~~~p~g~i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~d~~~~~~l~~~g~~-dg~ 149 (563)
+.+.|+.|.+|+.|+||+.|.+.-+||+.+++... .+.+|. +.++.....+ ++.
T Consensus 146 gylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~--~f~GH~-----------------------gDV~slsl~p~~~n 200 (343)
T KOG0286|consen 146 GYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQ--VFHGHT-----------------------GDVMSLSLSPSDGN 200 (343)
T ss_pred ceeEEEEEcCCCceEecCCCceEEEEEcccceEEE--EecCCc-----------------------ccEEEEecCCCCCC
Confidence 99999999999889999999999999999998332 222222 2222222222 555
Q ss_pred EEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeeeecCCCCCChhHHH
Q 008510 150 TKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRKLPYNRSDNPYDAA 224 (563)
Q Consensus 150 ~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~~~~~w~~a 224 (563)
+.+..+- +..+++||.+.+. .++.|.||+.| |.+|.| |+|..+.+++-|.+.+.|+..
T Consensus 201 tFvSg~c-D~~aklWD~R~~~---------------c~qtF~ghesD-INsv~ffP~G~afatGSDD~tcRlyDlR 259 (343)
T KOG0286|consen 201 TFVSGGC-DKSAKLWDVRSGQ---------------CVQTFEGHESD-INSVRFFPSGDAFATGSDDATCRLYDLR 259 (343)
T ss_pred eEEeccc-ccceeeeeccCcc---------------eeEeecccccc-cceEEEccCCCeeeecCCCceeEEEeec
Confidence 5544444 4778899976652 56679999966 899999 999999999999999999974
No 45
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.72 E-value=6.8e-17 Score=157.37 Aligned_cols=100 Identities=21% Similarity=0.312 Sum_probs=91.3
Q ss_pred CCCEEEEEECCCcEEEEcC--CC--ceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEecC--Cc
Q 008510 2 PGVGIISASHDCTIRLWAL--TG--QVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIEHP--GC 72 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~--~g--~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~h~--~~ 72 (563)
+|+++||+|.|.|.-+|.+ ++ +..+++.||..+|..+.|+||. ++++||.|..+++|| +|.+.+.+.+. .+
T Consensus 235 nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S 314 (519)
T KOG0293|consen 235 NGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFS 314 (519)
T ss_pred CCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCC
Confidence 6899999999999999998 33 4688999999999999999998 999999999999999 88888888854 69
Q ss_pred EEEEEEccCCc-EEEEeCCCcEEEEEcCCC
Q 008510 73 VWDAKFLENGD-IVTACSDGVTRIWTVHSD 101 (563)
Q Consensus 73 V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~ 101 (563)
+.+++|.|||. +++|+.|+.|..||++..
T Consensus 315 ~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn 344 (519)
T KOG0293|consen 315 VSSCAWCPDGFRFVTGSPDRTIIMWDLDGN 344 (519)
T ss_pred cceeEEccCCceeEecCCCCcEEEecCCcc
Confidence 99999999998 999999999999998753
No 46
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.72 E-value=2.2e-16 Score=168.27 Aligned_cols=202 Identities=25% Similarity=0.371 Sum_probs=153.1
Q ss_pred CCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCCeEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEEEEE
Q 008510 3 GVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDAKF 78 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~v~~ 78 (563)
++.+++||.|.|+|+||. +|+|..++.||++.|.++...+. .+++||.|.+|++|+ ++.+++++. |.+.|.+|..
T Consensus 261 ~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~~-~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~ 339 (537)
T KOG0274|consen 261 GDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDPF-LLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQL 339 (537)
T ss_pred CCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccCc-eEeeccCCceEEEEeccCcceEEEeccccccEEEEEe
Confidence 688999999999999999 99999999999999999987654 788999999999999 799999999 9999999999
Q ss_pred ccCCcEEEEeCCCcEEEEEcCCCceeceeeecccccccc-------eeEEeeccCCceEEEeCCCC-ceeeec-ccCC--
Q 008510 79 LENGDIVTACSDGVTRIWTVHSDKVADSLELEAYASELS-------QYKLCRKKVGGLKLEDLPGL-EALQIP-GTNA-- 147 (563)
Q Consensus 79 ~p~g~i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~-------~~~~~~~~~~~i~~~d~~~~-~~l~~~-g~~d-- 147 (563)
. .+.+++|+.|++|+|||..++++.. .+.+|...|. ...+++..|+.|++||+.+. ..+... ++..
T Consensus 340 ~-~~~lvsgs~d~~v~VW~~~~~~cl~--sl~gH~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v 416 (537)
T KOG0274|consen 340 D-EPLLVSGSYDGTVKVWDPRTGKCLK--SLSGHTGRVYSLIVDSENRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLV 416 (537)
T ss_pred c-CCEEEEEecCceEEEEEhhhceeee--eecCCcceEEEEEecCcceEEeeeeccceEeecCCchhhhhhhhcCCcccc
Confidence 7 3349999999999999999888554 3444555444 34556778899999999988 554443 4332
Q ss_pred ------CeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEcCCCCeeeeecCCCCCChh
Q 008510 148 ------GQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDIGDGEPTRKLPYNRSDNPY 221 (563)
Q Consensus 148 ------g~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~~dg~~~~~~~~n~~~~~w 221 (563)
+...+....| +.+.+||..++... +.+.+.+...|..+... ...++....|++...|
T Consensus 417 ~~l~~~~~~Lvs~~aD-~~Ik~WD~~~~~~~---------------~~~~~~~~~~v~~l~~~-~~~il~s~~~~~~~l~ 479 (537)
T KOG0274|consen 417 SSLLLRDNFLVSSSAD-GTIKLWDAEEGECL---------------RTLEGRHVGGVSALALG-KEEILCSSDDGSVKLW 479 (537)
T ss_pred cccccccceeEecccc-ccEEEeecccCcee---------------eeeccCCcccEEEeecC-cceEEEEecCCeeEEE
Confidence 2233333333 56778876665432 22344333556666553 2458888899999999
Q ss_pred HHHH
Q 008510 222 DAAD 225 (563)
Q Consensus 222 ~~a~ 225 (563)
++..
T Consensus 480 dl~~ 483 (537)
T KOG0274|consen 480 DLRS 483 (537)
T ss_pred eccc
Confidence 7753
No 47
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.72 E-value=8.7e-17 Score=151.44 Aligned_cols=199 Identities=19% Similarity=0.246 Sum_probs=146.0
Q ss_pred CCCEEEEEECCCcEEEEcCC-------------C------ceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc-C
Q 008510 2 PGVGIISASHDCTIRLWALT-------------G------QVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-D 60 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~~-------------g------~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd-~ 60 (563)
||.++++||.|..|||.|++ | -.++++..|.+.|.++.|+|.. .++||+.|++|+++| +
T Consensus 123 DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfs 202 (430)
T KOG0640|consen 123 DGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFS 202 (430)
T ss_pred CCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCCCeEEEEecc
Confidence 78999999999999999973 1 2578999999999999999988 999999999999999 3
Q ss_pred C----ceeEEEecCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCceece-eeeccccccc--------ceeEEeeccC
Q 008510 61 G----VCVQSIEHPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADS-LELEAYASEL--------SQYKLCRKKV 126 (563)
Q Consensus 61 ~----~~~~~l~h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~-~~~~~~~~~v--------~~~~~~~~~~ 126 (563)
. +....++....|.+++|+|.|+ ++.|...-++|+||+.+.++.-. .+-..+.+.+ ..+.++++.|
T Consensus 203 K~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkD 282 (430)
T KOG0640|consen 203 KTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKD 282 (430)
T ss_pred cHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccC
Confidence 2 3344555566899999999999 78888888999999999875422 2223333333 3556788999
Q ss_pred CceEEEeCCCC-------------ceeeecccCCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCC---Cceee
Q 008510 127 GGLKLEDLPGL-------------EALQIPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGM---NRPIL 190 (563)
Q Consensus 127 ~~i~~~d~~~~-------------~~l~~~g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~---~~~~~ 190 (563)
|.|++||--.. ++-...++++|.+.+..+.| .+++.|+..++...+. ..++...+. +.+..
T Consensus 283 G~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~D-S~vkLWEi~t~R~l~~--YtGAg~tgrq~~rtqAv 359 (430)
T KOG0640|consen 283 GAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKD-STVKLWEISTGRMLKE--YTGAGTTGRQKHRTQAV 359 (430)
T ss_pred CcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCc-ceeeeeeecCCceEEE--EecCCcccchhhhhhhh
Confidence 99999997432 33334478888887766665 7889999988865433 333322221 22233
Q ss_pred cCcccCcEEEEEc
Q 008510 191 DGIQYDYVFDVDI 203 (563)
Q Consensus 191 ~g~~~d~v~~vd~ 203 (563)
-.|..|||...|-
T Consensus 360 FNhtEdyVl~pDE 372 (430)
T KOG0640|consen 360 FNHTEDYVLFPDE 372 (430)
T ss_pred hcCccceEEcccc
Confidence 3456688876654
No 48
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.72 E-value=3.3e-17 Score=159.50 Aligned_cols=100 Identities=30% Similarity=0.572 Sum_probs=93.7
Q ss_pred CCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEEEE
Q 008510 3 GVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDAK 77 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~v~ 77 (563)
+..|+|||.||+|+|||. ..+..+.+.||..-|.|++|+|.. .++|+|.|..|++|| +++|+.++. |...|..+.
T Consensus 192 DskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~ 271 (464)
T KOG0284|consen 192 DSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVK 271 (464)
T ss_pred CceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEE
Confidence 567999999999999999 777778889999999999999986 999999999999999 999999998 999999999
Q ss_pred EccCCc-EEEEeCCCcEEEEEcCCCc
Q 008510 78 FLENGD-IVTACSDGVTRIWTVHSDK 102 (563)
Q Consensus 78 ~~p~g~-i~sgs~Dg~Irvwd~~~~~ 102 (563)
|+|++. ++++|.|..+++||+++-+
T Consensus 272 f~~n~N~Llt~skD~~~kv~DiR~mk 297 (464)
T KOG0284|consen 272 FNPNGNWLLTGSKDQSCKVFDIRTMK 297 (464)
T ss_pred EcCCCCeeEEccCCceEEEEehhHhH
Confidence 999999 9999999999999999654
No 49
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=1.5e-16 Score=162.14 Aligned_cols=132 Identities=20% Similarity=0.334 Sum_probs=114.8
Q ss_pred CEEEEEECCCcEEEEcCC--CceeEEEecCCCcEEEEEEcCCC--eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEEE
Q 008510 4 VGIISASHDCTIRLWALT--GQVLMEMVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDA 76 (563)
Q Consensus 4 ~~l~s~s~DgtIrlWd~~--g~~i~~l~gH~~~V~~v~~~p~g--~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~v 76 (563)
-+++|+|.|-+||+||.+ -.|.+++.||+.+|.+|+|+|.. .|+|||-|+|||||+ +..+..++. |...|.||
T Consensus 110 P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~V 189 (794)
T KOG0276|consen 110 PYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCV 189 (794)
T ss_pred CeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceE
Confidence 478999999999999994 46899999999999999999975 899999999999999 777888888 99999999
Q ss_pred EEccCCc---EEEEeCCCcEEEEEcCCCceeceeeecccccccc--------eeEEeeccCCceEEEeCCCC
Q 008510 77 KFLENGD---IVTACSDGVTRIWTVHSDKVADSLELEAYASELS--------QYKLCRKKVGGLKLEDLPGL 137 (563)
Q Consensus 77 ~~~p~g~---i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~--------~~~~~~~~~~~i~~~d~~~~ 137 (563)
.+-+.|+ +++|+.|.+|+|||..+..+. ..+++|.+.++ ..++++++||++++|.-.+.
T Consensus 190 dyy~~gdkpylIsgaDD~tiKvWDyQtk~CV--~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty 259 (794)
T KOG0276|consen 190 DYYTGGDKPYLISGADDLTIKVWDYQTKSCV--QTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTY 259 (794)
T ss_pred EeccCCCcceEEecCCCceEEEeecchHHHH--HHhhcccccceEEEecCCCcEEEEecCCccEEEecCcce
Confidence 9999885 999999999999999998754 35566665554 45668999999999997655
No 50
>PTZ00420 coronin; Provisional
Probab=99.71 E-value=7.5e-16 Score=164.80 Aligned_cols=134 Identities=15% Similarity=0.192 Sum_probs=101.9
Q ss_pred EECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCC-C-eEEEEeCCCcEEEEc--CCc--------eeEEEe-cCCcEE
Q 008510 9 ASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHAS-G-LIVSGSEDRFAKIWK--DGV--------CVQSIE-HPGCVW 74 (563)
Q Consensus 9 ~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~-g-~l~s~s~D~tvriWd--~~~--------~~~~l~-h~~~V~ 74 (563)
||.++.|++|+. ...++..+.+|.+.|.+++|+|+ + .++|||.|++|+||| ++. ++..+. |...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 667889999998 66778899999999999999997 5 899999999999999 321 233455 888999
Q ss_pred EEEEccCCc--EEEEeCCCcEEEEEcCCCceeceeee----ccccccc-ceeEEeeccCCceEEEeCCCCceeee
Q 008510 75 DAKFLENGD--IVTACSDGVTRIWTVHSDKVADSLEL----EAYASEL-SQYKLCRKKVGGLKLEDLPGLEALQI 142 (563)
Q Consensus 75 ~v~~~p~g~--i~sgs~Dg~Irvwd~~~~~~~~~~~~----~~~~~~v-~~~~~~~~~~~~i~~~d~~~~~~l~~ 142 (563)
+++|+|++. +++|+.|++|++||+++++....... ....-.. .....++..++.|++||++..+.+..
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~t 204 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASS 204 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEE
Confidence 999999887 57999999999999998874332211 1111111 23334456788999999998776543
No 51
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.70 E-value=1.3e-16 Score=164.56 Aligned_cols=199 Identities=21% Similarity=0.318 Sum_probs=151.5
Q ss_pred CCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCCeEEEEeCCCcEEEEcCCceeEEEe-cCCcEEEEEEcc
Q 008510 3 GVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWKDGVCVQSIE-HPGCVWDAKFLE 80 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g~l~s~s~D~tvriWd~~~~~~~l~-h~~~V~~v~~~p 80 (563)
+.++++|++|++|.+|.. .+.++.++.||.+.|+|++...++.++|||+|.|+|+|..+++..++. |+..||+|+..|
T Consensus 71 ~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~~~l~~~l~gH~asVWAv~~l~ 150 (745)
T KOG0301|consen 71 KGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRIGELVYSLQGHTASVWAVASLP 150 (745)
T ss_pred CcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCceEecccccceEEecchhhhcccCCcchheeeeeecC
Confidence 456899999999999999 789999999999999999988787899999999999999888888887 999999999999
Q ss_pred CCcEEEEeCCCcEEEEEcCCCceeceeeecccccccce-------eEEeeccCCceEEEeCCCCceeeecccCCCeEEEE
Q 008510 81 NGDIVTACSDGVTRIWTVHSDKVADSLELEAYASELSQ-------YKLCRKKVGGLKLEDLPGLEALQIPGTNAGQTKVV 153 (563)
Q Consensus 81 ~g~i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~~-------~~~~~~~~~~i~~~d~~~~~~l~~~g~~dg~~~l~ 153 (563)
.+.++|||.|.+||+|.-.+- . ..+.+|.+-|.. ..++.+.||.|+.|++.+...+...||..-.+.+.
T Consensus 151 e~~~vTgsaDKtIklWk~~~~--l--~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~~ge~l~~~~ghtn~vYsis 226 (745)
T KOG0301|consen 151 ENTYVTGSADKTIKLWKGGTL--L--KTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDLDGEVLLEMHGHTNFVYSIS 226 (745)
T ss_pred CCcEEeccCcceeeeccCCch--h--hhhccchhheeeeEEecCCCeEeecCCceEEEEeccCceeeeeeccceEEEEEE
Confidence 989999999999999987432 1 234455555443 44577889999999996665555557766555444
Q ss_pred ---------ecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeeeecCCCCCChhHH
Q 008510 154 ---------REGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRKLPYNRSDNPYDA 223 (563)
Q Consensus 154 ---------~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~~~~~w~~ 223 (563)
.++.+..+.+|+.. . ...+.. +.+. -||++.+ ++|. +..++.|+-+++|..
T Consensus 227 ~~~~~~~Ivs~gEDrtlriW~~~--e---~~q~I~----------lPtt---siWsa~~L~NgD-Ivvg~SDG~VrVfT~ 287 (745)
T KOG0301|consen 227 MALSDGLIVSTGEDRTLRIWKKD--E---CVQVIT----------LPTT---SIWSAKVLLNGD-IVVGGSDGRVRVFTV 287 (745)
T ss_pred ecCCCCeEEEecCCceEEEeecC--c---eEEEEe----------cCcc---ceEEEEEeeCCC-EEEeccCceEEEEEe
Confidence 33333444455532 1 112222 2222 2888888 7776 888999999998876
Q ss_pred H
Q 008510 224 A 224 (563)
Q Consensus 224 a 224 (563)
.
T Consensus 288 ~ 288 (745)
T KOG0301|consen 288 D 288 (745)
T ss_pred c
Confidence 5
No 52
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.70 E-value=4.2e-15 Score=148.10 Aligned_cols=175 Identities=19% Similarity=0.284 Sum_probs=128.4
Q ss_pred CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC--eEEEEeCCCcEEEEc---CCceeEEEecCCcEEE
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK---DGVCVQSIEHPGCVWD 75 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g--~l~s~s~D~tvriWd---~~~~~~~l~h~~~V~~ 75 (563)
++..|++||.|+.+++||+ ++.....+.||+++|.|.+|+|.. .++|||.||+||+|| .+..+.++.|..+|-+
T Consensus 122 d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~ 201 (487)
T KOG0310|consen 122 DNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVES 201 (487)
T ss_pred CCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceee
Confidence 5678999999999999999 555566899999999999999964 899999999999999 3367778889999999
Q ss_pred EEEccCCcEEEEeCCCcEEEEEcCCCceeceeeecccccccceeEEeeccCCceEEEeCCCCceeeecccCCCeEEEEec
Q 008510 76 AKFLENGDIVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLCRKKVGGLKLEDLPGLEALQIPGTNAGQTKVVRE 155 (563)
Q Consensus 76 v~~~p~g~i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~d~~~~~~l~~~g~~dg~~~l~~~ 155 (563)
|.+.|.|.++..+....|||||+.+|.+... ....|...|.+..+.. .+.-...++-||.+++++.
T Consensus 202 vl~lpsgs~iasAgGn~vkVWDl~~G~qll~-~~~~H~KtVTcL~l~s-------------~~~rLlS~sLD~~VKVfd~ 267 (487)
T KOG0310|consen 202 VLALPSGSLIASAGGNSVKVWDLTTGGQLLT-SMFNHNKTVTCLRLAS-------------DSTRLLSGSLDRHVKVFDT 267 (487)
T ss_pred EEEcCCCCEEEEcCCCeEEEEEecCCceehh-hhhcccceEEEEEeec-------------CCceEeecccccceEEEEc
Confidence 9999998844444567999999997763321 2223444444444322 1122244677888888887
Q ss_pred CCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeeeecCCCCC
Q 008510 156 GDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRKLPYNRSD 218 (563)
Q Consensus 156 ~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~~~ 218 (563)
.+-.+++.|.... -|.++++ +|++.+.-+--|+..
T Consensus 268 t~~Kvv~s~~~~~----------------------------pvLsiavs~dd~t~viGmsnGlv 303 (487)
T KOG0310|consen 268 TNYKVVHSWKYPG----------------------------PVLSIAVSPDDQTVVIGMSNGLV 303 (487)
T ss_pred cceEEEEeeeccc----------------------------ceeeEEecCCCceEEEeccccee
Confidence 7777777777422 2666666 666666666666543
No 53
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.70 E-value=3.7e-17 Score=149.79 Aligned_cols=219 Identities=22% Similarity=0.220 Sum_probs=166.1
Q ss_pred CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEecCCcEEEEE
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIEHPGCVWDAK 77 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~h~~~V~~v~ 77 (563)
+|-+|+|++.|+.-.+-+- +|.-+.++.||.+.|++.+.+.+. ..+|++.|-+.+||| +|..++++.|...|.+++
T Consensus 28 ~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~hkhivk~~a 107 (334)
T KOG0278|consen 28 DGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFEHKHIVKAVA 107 (334)
T ss_pred CceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhhhhheeeeEE
Confidence 4668999999999988888 899999999999999999988877 899999999999999 999999999999999999
Q ss_pred EccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccccc--------eeEEeeccCCceEEEeCCCCceeeec-----
Q 008510 78 FLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELS--------QYKLCRKKVGGLKLEDLPGLEALQIP----- 143 (563)
Q Consensus 78 ~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~--------~~~~~~~~~~~i~~~d~~~~~~l~~~----- 143 (563)
|+.|.. +++|+.+..+||||+...+ ++..++.++...+. ..+++...+++|++||.++....+..
T Consensus 108 f~~ds~~lltgg~ekllrvfdln~p~-App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~ 186 (334)
T KOG0278|consen 108 FSQDSNYLLTGGQEKLLRVFDLNRPK-APPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSP 186 (334)
T ss_pred ecccchhhhccchHHHhhhhhccCCC-CCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCC
Confidence 999988 9999999999999999877 55666666666655 34455678899999999987554432
Q ss_pred -----ccCCCeEEEEecCCCeEEEEEecccceEEEe----------------CcEeeCCCCCC----------Cceee-c
Q 008510 144 -----GTNAGQTKVVREGDNGVAYSWDMKEQKWDKL----------------GEVVDGPDDGM----------NRPIL-D 191 (563)
Q Consensus 144 -----g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~----------------g~v~~~~~~~~----------~~~~~-~ 191 (563)
-+.||.+.....+ ..+..||.....-.+- +.++.+..+.. ....| .
T Consensus 187 VtSlEvs~dG~ilTia~g--ssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nk 264 (334)
T KOG0278|consen 187 VTSLEVSQDGRILTIAYG--SSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNK 264 (334)
T ss_pred CcceeeccCCCEEEEecC--ceeEEeccccccceeeccCccccccccccCCCceEEecCcceEEEEEeccCCceeeeccc
Confidence 4566766554433 3345677544322111 11111111100 11123 3
Q ss_pred CcccCcEEEEEc-CCCCeeeeecCCCCCChhHHH
Q 008510 192 GIQYDYVFDVDI-GDGEPTRKLPYNRSDNPYDAA 224 (563)
Q Consensus 192 g~~~d~v~~vd~-~dg~~~~~~~~n~~~~~w~~a 224 (563)
||. +-|.+|.| |||+..++++-|+++++|...
T Consensus 265 gh~-gpVhcVrFSPdGE~yAsGSEDGTirlWQt~ 297 (334)
T KOG0278|consen 265 GHF-GPVHCVRFSPDGELYASGSEDGTIRLWQTT 297 (334)
T ss_pred CCC-CceEEEEECCCCceeeccCCCceEEEEEec
Confidence 443 67889999 999999999999999999874
No 54
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.69 E-value=3.4e-14 Score=147.91 Aligned_cols=212 Identities=19% Similarity=0.264 Sum_probs=161.1
Q ss_pred CCEEEEEECCCcEEEEcCCCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc-CC-----ceeEEEe-cCCcEE
Q 008510 3 GVGIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-DG-----VCVQSIE-HPGCVW 74 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd-~~-----~~~~~l~-h~~~V~ 74 (563)
.++++.++|.+.+|+|+..+---..+.||+..|.+++...+| .++|||.|.++++|. +. -|+.... |.+.|.
T Consensus 336 ~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svg 415 (775)
T KOG0319|consen 336 ESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVG 415 (775)
T ss_pred cceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccc
Confidence 478999999999999999443334889999999999977788 999999999999996 22 2333334 999999
Q ss_pred EEEEccCCc--EEEEeCCCcEEEEEcCCCce-ec------eeeecccccccc--------eeEEeeccCCceEEEeCCCC
Q 008510 75 DAKFLENGD--IVTACSDGVTRIWTVHSDKV-AD------SLELEAYASELS--------QYKLCRKKVGGLKLEDLPGL 137 (563)
Q Consensus 75 ~v~~~p~g~--i~sgs~Dg~Irvwd~~~~~~-~~------~~~~~~~~~~v~--------~~~~~~~~~~~i~~~d~~~~ 137 (563)
+|+++..|- ++++|.|.++++|++...+. .. ......|...++ ....++++|.+.++|+++..
T Consensus 416 ava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~ 495 (775)
T KOG0319|consen 416 AVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQL 495 (775)
T ss_pred eeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCc
Confidence 999987776 89999999999999987321 11 112234554444 34456789999999999966
Q ss_pred ceeeec-ccCCCeEEEEecCC---------CeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCC
Q 008510 138 EALQIP-GTNAGQTKVVREGD---------NGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDG 206 (563)
Q Consensus 138 ~~l~~~-g~~dg~~~l~~~~~---------~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg 206 (563)
..+... ||+-|...+-++.. +..+.+|...++.+. +.++||+ .-|+.+.| .+|
T Consensus 496 ~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSCl---------------kT~eGH~-~aVlra~F~~~~ 559 (775)
T KOG0319|consen 496 RLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCL---------------KTFEGHT-SAVLRASFIRNG 559 (775)
T ss_pred eEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceee---------------eeecCcc-ceeEeeeeeeCC
Confidence 665544 89888776655544 344556665554332 3488887 67999999 899
Q ss_pred CeeeeecCCCCCChhHHHHHHHHh
Q 008510 207 EPTRKLPYNRSDNPYDAADKWLLK 230 (563)
Q Consensus 207 ~~~~~~~~n~~~~~w~~a~~f~~~ 230 (563)
+.+.+...|+-+++|++...-|..
T Consensus 560 ~qliS~~adGliKlWnikt~eC~~ 583 (775)
T KOG0319|consen 560 KQLISAGADGLIKLWNIKTNECEM 583 (775)
T ss_pred cEEEeccCCCcEEEEeccchhhhh
Confidence 999999999999999998776553
No 55
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.69 E-value=3e-15 Score=150.13 Aligned_cols=153 Identities=16% Similarity=0.283 Sum_probs=123.9
Q ss_pred EEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe----cCCcEEEE
Q 008510 5 GIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE----HPGCVWDA 76 (563)
Q Consensus 5 ~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~----h~~~V~~v 76 (563)
+++|||.|++|-+|+- ..+.-.++..|..+|+||.|+||| .|+|.|.||++.+|| +++.+..+. |.+.|.++
T Consensus 162 Ri~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfal 241 (603)
T KOG0318|consen 162 RIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFAL 241 (603)
T ss_pred EEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEE
Confidence 6899999999999998 678888899999999999999999 999999999999999 888888886 99999999
Q ss_pred EEccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccc--ccc-----ceeEEeeccCCceEEEeCCCCceeeec-ccCC
Q 008510 77 KFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYA--SEL-----SQYKLCRKKVGGLKLEDLPGLEALQIP-GTNA 147 (563)
Q Consensus 77 ~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~--~~v-----~~~~~~~~~~~~i~~~d~~~~~~l~~~-g~~d 147 (563)
+|+||+. ++|++.|.++||||+.+.++.....+..-. ..+ ....++....|.|.+.+....+.+... ||..
T Consensus 242 sWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK 321 (603)
T KOG0318|consen 242 SWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNK 321 (603)
T ss_pred EECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheeccccc
Confidence 9999998 999999999999999998866655443321 111 244556677789999988777665544 6655
Q ss_pred CeEEEEecCC
Q 008510 148 GQTKVVREGD 157 (563)
Q Consensus 148 g~~~l~~~~~ 157 (563)
+.+.+.-.++
T Consensus 322 ~ITaLtv~~d 331 (603)
T KOG0318|consen 322 SITALTVSPD 331 (603)
T ss_pred ceeEEEEcCC
Confidence 5554444443
No 56
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.68 E-value=2.4e-15 Score=144.90 Aligned_cols=206 Identities=16% Similarity=0.279 Sum_probs=157.0
Q ss_pred CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEEE
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDA 76 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~v 76 (563)
||.++|||+-+|.|+||.. +|....++.+--+.+.=++|+|.+ .++.|+.||.+.+|. ++...+.+. |..++.+=
T Consensus 117 dgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G 196 (399)
T KOG0296|consen 117 DGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCG 196 (399)
T ss_pred CceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccc
Confidence 6889999999999999999 788778887666677778999998 899999999999999 556667777 98999999
Q ss_pred EEccCCc-EEEEeCCCcEEEEEcCCCceeceee------ecccc----------cc------------------------
Q 008510 77 KFLENGD-IVTACSDGVTRIWTVHSDKVADSLE------LEAYA----------SE------------------------ 115 (563)
Q Consensus 77 ~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~------~~~~~----------~~------------------------ 115 (563)
.|.|+|+ +++|..||+|++|+..++++..... ..... ..
T Consensus 197 ~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~ 276 (399)
T KOG0296|consen 197 EFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVP 276 (399)
T ss_pred cccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCc
Confidence 9999998 9999999999999999987554322 11000 00
Q ss_pred ------------cc--------eeEEeeccCCceEEEeCCCCceeeecccCCCeEEEEecCC--------CeEEEEEecc
Q 008510 116 ------------LS--------QYKLCRKKVGGLKLEDLPGLEALQIPGTNAGQTKVVREGD--------NGVAYSWDMK 167 (563)
Q Consensus 116 ------------v~--------~~~~~~~~~~~i~~~d~~~~~~l~~~g~~dg~~~l~~~~~--------~~~~~~wd~~ 167 (563)
+. ....++.-+|.|.+||+.....-...-+.+|.+++.+-++ ++.+++||.+
T Consensus 277 ~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~t~~l~t~c~~g~v~~wDaR 356 (399)
T KOG0296|consen 277 ELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLNTDYLLTACANGKVRQWDAR 356 (399)
T ss_pred cccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcCcchheeeccCceEEeeecc
Confidence 00 1112345568888999877666666677778777666552 2455677766
Q ss_pred cceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeeeecCCCCCChhHH
Q 008510 168 EQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRKLPYNRSDNPYDA 223 (563)
Q Consensus 168 ~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~~~~~w~~ 223 (563)
+|+ -+..|.||. ..|+++.+ ++++.+.+.+-|.+-+++.+
T Consensus 357 tG~---------------l~~~y~GH~-~~Il~f~ls~~~~~vvT~s~D~~a~VF~v 397 (399)
T KOG0296|consen 357 TGQ---------------LKFTYTGHQ-MGILDFALSPQKRLVVTVSDDNTALVFEV 397 (399)
T ss_pred ccc---------------eEEEEecCc-hheeEEEEcCCCcEEEEecCCCeEEEEec
Confidence 653 345688887 66899998 99999999999998777654
No 57
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.68 E-value=5.2e-15 Score=168.76 Aligned_cols=212 Identities=13% Similarity=0.185 Sum_probs=146.0
Q ss_pred CCCEEEEEECCCcEEEEcCCC-----c----eeEEEecCCCcEEEEEEcCC-C-eEEEEeCCCcEEEEc--CCceeEEEe
Q 008510 2 PGVGIISASHDCTIRLWALTG-----Q----VLMEMVGHTAIVYSIDSHAS-G-LIVSGSEDRFAKIWK--DGVCVQSIE 68 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~~g-----~----~i~~l~gH~~~V~~v~~~p~-g-~l~s~s~D~tvriWd--~~~~~~~l~ 68 (563)
+|+++++||.|++|++|+... . ++..+.+ ...|.+++|+|. + .+++++.|++|++|| +++.+..+.
T Consensus 494 dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~-~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~ 572 (793)
T PLN00181 494 DGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELAS-RSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMK 572 (793)
T ss_pred CCCEEEEEeCCCEEEEEECCcccccccccccceEEecc-cCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEec
Confidence 578999999999999999721 1 2334443 467899999885 4 899999999999999 677778787
Q ss_pred -cCCcEEEEEEcc-CCc-EEEEeCCCcEEEEEcCCCceeceeeecc------cccccceeEEeeccCCceEEEeCCCCce
Q 008510 69 -HPGCVWDAKFLE-NGD-IVTACSDGVTRIWTVHSDKVADSLELEA------YASELSQYKLCRKKVGGLKLEDLPGLEA 139 (563)
Q Consensus 69 -h~~~V~~v~~~p-~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~i~~~d~~~~~~ 139 (563)
|.+.|++++|+| ++. +++|+.||+|++||++++.......... +...-....+++..++.|++||++....
T Consensus 573 ~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~ 652 (793)
T PLN00181 573 EHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKL 652 (793)
T ss_pred CCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCc
Confidence 999999999997 677 8999999999999999876443221110 1111234566778899999999976542
Q ss_pred -e-eecccCCCeEEEEec--------CCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCe
Q 008510 140 -L-QIPGTNAGQTKVVRE--------GDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEP 208 (563)
Q Consensus 140 -l-~~~g~~dg~~~l~~~--------~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~ 208 (563)
+ ...+|......+.+. +.++.+.+||...+. .. ........+.||. ..+..+.+ ++|..
T Consensus 653 ~~~~~~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~-------~~--~~~~~l~~~~gh~-~~i~~v~~s~~~~~ 722 (793)
T PLN00181 653 PLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSI-------SG--INETPLHSFMGHT-NVKNFVGLSVSDGY 722 (793)
T ss_pred cceEecCCCCCEEEEEEeCCCEEEEEECCCEEEEEeCCCCc-------cc--cCCcceEEEcCCC-CCeeEEEEcCCCCE
Confidence 2 223554433322222 222344556543221 00 0011234567776 56778888 78889
Q ss_pred eeeecCCCCCChhHHH
Q 008510 209 TRKLPYNRSDNPYDAA 224 (563)
Q Consensus 209 ~~~~~~n~~~~~w~~a 224 (563)
+++++.|+.+.+|+..
T Consensus 723 lasgs~D~~v~iw~~~ 738 (793)
T PLN00181 723 IATGSETNEVFVYHKA 738 (793)
T ss_pred EEEEeCCCEEEEEECC
Confidence 9999999999999864
No 58
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.67 E-value=5.3e-15 Score=148.43 Aligned_cols=224 Identities=21% Similarity=0.217 Sum_probs=144.3
Q ss_pred CCCEEEEEECCCcEEEEcC-CCceeEEEe---cCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeE---------
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVLMEMV---GHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQ--------- 65 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~---gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~--------- 65 (563)
||++|+|.|.||+|.+||- +|+.+..+. +|.+.|++++|+||+ +++|+|.|.++|||| +.++++
T Consensus 201 DG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~ 280 (603)
T KOG0318|consen 201 DGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVE 280 (603)
T ss_pred CCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchh
Confidence 6899999999999999999 999999998 899999999999999 999999999999999 433322
Q ss_pred ----------------------------------EEe-cCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCceec----
Q 008510 66 ----------------------------------SIE-HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVAD---- 105 (563)
Q Consensus 66 ----------------------------------~l~-h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~---- 105 (563)
++. |...|.+++.+|+|. |.+|+.||.|.-|+..++..-+
T Consensus 281 dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~ 360 (603)
T KOG0318|consen 281 DQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGK 360 (603)
T ss_pred ceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccc
Confidence 223 677899999999999 9999999999999998876321
Q ss_pred --eeeecccccccceeEEeeccCCceEEEeCCCCce------------eeecccCCCeEEEEecCCCeEEEEEecccceE
Q 008510 106 --SLELEAYASELSQYKLCRKKVGGLKLEDLPGLEA------------LQIPGTNAGQTKVVREGDNGVAYSWDMKEQKW 171 (563)
Q Consensus 106 --~~~~~~~~~~v~~~~~~~~~~~~i~~~d~~~~~~------------l~~~g~~dg~~~l~~~~~~~~~~~wd~~~~~w 171 (563)
...+..+...-....++..-|..+++.++.+... ....-..+|.+.++.+-.+.+++ -+.+.-.-
T Consensus 361 ~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l-~~~~~~~~ 439 (603)
T KOG0318|consen 361 GHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLL-QDQTKVSS 439 (603)
T ss_pred cccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEE-ecCCccee
Confidence 1122222222223444555666777765532211 11112223323222222212211 11100000
Q ss_pred EEe------------Cc--EeeCCCCCCCcee--ecCc----------ccCcEEEEEc-CCCCeeeeecCCCCCChhHHH
Q 008510 172 DKL------------GE--VVDGPDDGMNRPI--LDGI----------QYDYVFDVDI-GDGEPTRKLPYNRSDNPYDAA 224 (563)
Q Consensus 172 ~~~------------g~--v~~~~~~~~~~~~--~~g~----------~~d~v~~vd~-~dg~~~~~~~~n~~~~~w~~a 224 (563)
..+ +. .+++.. ...++ +.|. +...+.+|.+ +||..++..--++.+-+|+++
T Consensus 440 ~~~~y~~s~vAv~~~~~~vaVGG~D--gkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~ 517 (603)
T KOG0318|consen 440 IPIGYESSAVAVSPDGSEVAVGGQD--GKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVA 517 (603)
T ss_pred eccccccceEEEcCCCCEEEEeccc--ceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcc
Confidence 000 11 111110 01111 1221 1245778999 999999999999999999999
Q ss_pred HHHH
Q 008510 225 DKWL 228 (563)
Q Consensus 225 ~~f~ 228 (563)
.+|.
T Consensus 518 s~~~ 521 (603)
T KOG0318|consen 518 SREV 521 (603)
T ss_pred cCce
Confidence 8876
No 59
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.67 E-value=1.2e-16 Score=155.54 Aligned_cols=205 Identities=17% Similarity=0.195 Sum_probs=150.8
Q ss_pred CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc-CCceeEEEe-c-CCcEEEE
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-DGVCVQSIE-H-PGCVWDA 76 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd-~~~~~~~l~-h-~~~V~~v 76 (563)
+|++|++|+..|-..+|+. .......++.|.+.|.++.|+++| .++||..||.||+|+ .-+.++.++ | ...|+++
T Consensus 107 eGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~eaIRdl 186 (464)
T KOG0284|consen 107 EGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQAHHAEAIRDL 186 (464)
T ss_pred CCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHhhHhhhhhhhee
Confidence 4799999999999999998 333333467899999999999999 999999999999999 777777777 4 4799999
Q ss_pred EEccCCc-EEEEeCCCcEEEEEcCCCceeceeeeccccccc--------ceeEEeeccCCceEEEeCCCCceeeec-ccC
Q 008510 77 KFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASEL--------SQYKLCRKKVGGLKLEDLPGLEALQIP-GTN 146 (563)
Q Consensus 77 ~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v--------~~~~~~~~~~~~i~~~d~~~~~~l~~~-g~~ 146 (563)
+|+|+.. +++++.||+|+|||.+..+... .+.+|.-.| .+.+++++.|..|++||-++.+.+... +|+
T Consensus 187 afSpnDskF~t~SdDg~ikiWdf~~~kee~--vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HK 264 (464)
T KOG0284|consen 187 AFSPNDSKFLTCSDDGTIKIWDFRMPKEER--VLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHK 264 (464)
T ss_pred ccCCCCceeEEecCCCeEEEEeccCCchhh--eeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhcc
Confidence 9999765 9999999999999998776433 234444333 356678888899999999988776554 666
Q ss_pred CCeEEEEecCCCe---------EEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-C-CCCeeeeecCC
Q 008510 147 AGQTKVVREGDNG---------VAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-G-DGEPTRKLPYN 215 (563)
Q Consensus 147 dg~~~l~~~~~~~---------~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~-dg~~~~~~~~n 215 (563)
.-...+.+..++. .+.++|... ....+.|.||+ +.|.++.+ + .-....++.+|
T Consensus 265 ntVl~~~f~~n~N~Llt~skD~~~kv~DiR~---------------mkEl~~~r~Hk-kdv~~~~WhP~~~~lftsgg~D 328 (464)
T KOG0284|consen 265 NTVLAVKFNPNGNWLLTGSKDQSCKVFDIRT---------------MKELFTYRGHK-KDVTSLTWHPLNESLFTSGGSD 328 (464)
T ss_pred ceEEEEEEcCCCCeeEEccCCceEEEEehhH---------------hHHHHHhhcch-hhheeeccccccccceeeccCC
Confidence 6555555554432 222333221 11345577777 55777777 3 33346677788
Q ss_pred CCCChhHHH
Q 008510 216 RSDNPYDAA 224 (563)
Q Consensus 216 ~~~~~w~~a 224 (563)
+++..|.+-
T Consensus 329 gsvvh~~v~ 337 (464)
T KOG0284|consen 329 GSVVHWVVG 337 (464)
T ss_pred CceEEEecc
Confidence 888888775
No 60
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=3.8e-15 Score=157.23 Aligned_cols=138 Identities=25% Similarity=0.385 Sum_probs=116.4
Q ss_pred EEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc-CCc-------------------
Q 008510 5 GIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-DGV------------------- 62 (563)
Q Consensus 5 ~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd-~~~------------------- 62 (563)
+++|||.|-|||||++ +++|+..+.||..+|.|..|+|.. .++|+|-|.|||||| +|-
T Consensus 107 WIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~ 186 (1202)
T KOG0292|consen 107 WILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQG 186 (1202)
T ss_pred eEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhcccc
Confidence 6899999999999999 999999999999999999999966 999999999999999 210
Q ss_pred -----------eeEEEe-cCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeeccccccccee--------EE
Q 008510 63 -----------CVQSIE-HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELSQY--------KL 121 (563)
Q Consensus 63 -----------~~~~l~-h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~~~--------~~ 121 (563)
..+.+. |...|.-++|+|.-. |++|+.|..|++|-....+.-..+...+|.+.|++. ++
T Consensus 187 ~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIl 266 (1202)
T KOG0292|consen 187 NSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLIL 266 (1202)
T ss_pred chhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeE
Confidence 013334 888999999999877 899999999999999887766667777888777654 45
Q ss_pred eeccCCceEEEeCCCCceeee
Q 008510 122 CRKKVGGLKLEDLPGLEALQI 142 (563)
Q Consensus 122 ~~~~~~~i~~~d~~~~~~l~~ 142 (563)
+.++|+.|++||+.....++.
T Consensus 267 SnsEDksirVwDm~kRt~v~t 287 (1202)
T KOG0292|consen 267 SNSEDKSIRVWDMTKRTSVQT 287 (1202)
T ss_pred ecCCCccEEEEecccccceee
Confidence 778899999999976655433
No 61
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.67 E-value=4.2e-16 Score=152.14 Aligned_cols=205 Identities=22% Similarity=0.300 Sum_probs=158.6
Q ss_pred CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEecCCcEEEEE
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIEHPGCVWDAK 77 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~h~~~V~~v~ 77 (563)
++.+++++++|+.+++|++ +++...++.||++.|+++.|.... .+++|+.|+++|+|| ...|..++-....+..|.
T Consensus 230 ~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~ 309 (459)
T KOG0288|consen 230 DNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIV 309 (459)
T ss_pred CCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccceE
Confidence 5788999999999999999 889999999999999999998776 799999999999999 778888876555777777
Q ss_pred EccCCcEEEEeCCCcEEEEEcCCCceeceeeecccccccc-----eeEEeeccCCceEEEeCCCCceeee----------
Q 008510 78 FLENGDIVTACSDGVTRIWTVHSDKVADSLELEAYASELS-----QYKLCRKKVGGLKLEDLPGLEALQI---------- 142 (563)
Q Consensus 78 ~~p~g~i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~-----~~~~~~~~~~~i~~~d~~~~~~l~~---------- 142 (563)
.+ ...+++|=.|++||+||.++.......++.+...++. ...++...+..+++.|+++.++...
T Consensus 310 ~~-~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~as 388 (459)
T KOG0288|consen 310 CS-ISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCAS 388 (459)
T ss_pred ec-ceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeecccccccc
Confidence 66 2238889999999999999988666555554333322 2334557788999999988765432
Q ss_pred -----cccCCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeeeecCCC
Q 008510 143 -----PGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRKLPYNR 216 (563)
Q Consensus 143 -----~g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~ 216 (563)
.++++|.+...++.| +.+|+|+..+++.+++...-+. ..-|+++.| +.|.+++...-+.
T Consensus 389 DwtrvvfSpd~~YvaAGS~d-gsv~iW~v~tgKlE~~l~~s~s--------------~~aI~s~~W~~sG~~Llsadk~~ 453 (459)
T KOG0288|consen 389 DWTRVVFSPDGSYVAAGSAD-GSVYIWSVFTGKLEKVLSLSTS--------------NAAITSLSWNPSGSGLLSADKQK 453 (459)
T ss_pred ccceeEECCCCceeeeccCC-CcEEEEEccCceEEEEeccCCC--------------CcceEEEEEcCCCchhhcccCCc
Confidence 256677776666665 6679999999888766433221 114899999 8999999998888
Q ss_pred CCChhH
Q 008510 217 SDNPYD 222 (563)
Q Consensus 217 ~~~~w~ 222 (563)
....|.
T Consensus 454 ~v~lW~ 459 (459)
T KOG0288|consen 454 AVTLWT 459 (459)
T ss_pred ceEecC
Confidence 887773
No 62
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.67 E-value=1.6e-16 Score=150.30 Aligned_cols=106 Identities=28% Similarity=0.509 Sum_probs=98.6
Q ss_pred CCCEEEEEECCCcEEEEcC-CCceeEEEe-cCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEE
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVLMEMV-GHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWD 75 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~-gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~ 75 (563)
|...+++|+.||.|++|.+ +|+|++.+. .|+..|+|+.|+.|+ .+.|+|.|.++||.- +|+++..++ |...|..
T Consensus 274 DsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~ 353 (508)
T KOG0275|consen 274 DSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNE 353 (508)
T ss_pred cHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccc
Confidence 3467899999999999999 999999998 899999999999998 999999999999999 999999999 9999999
Q ss_pred EEEccCCc-EEEEeCCCcEEEEEcCCCceecee
Q 008510 76 AKFLENGD-IVTACSDGVTRIWTVHSDKVADSL 107 (563)
Q Consensus 76 v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~ 107 (563)
..|.++|. |+++++||+|+||+.++..+....
T Consensus 354 a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tf 386 (508)
T KOG0275|consen 354 ATFTDDGHHIISASSDGTVKVWHGKTTECLSTF 386 (508)
T ss_pred eEEcCCCCeEEEecCCccEEEecCcchhhhhhc
Confidence 99999999 999999999999999988765443
No 63
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.67 E-value=1.2e-15 Score=144.32 Aligned_cols=209 Identities=18% Similarity=0.204 Sum_probs=148.7
Q ss_pred CCCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC---eEEEEeCCCcEEEEc--CCceeEEEe-cCCcE
Q 008510 1 MPGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG---LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCV 73 (563)
Q Consensus 1 ~~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g---~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V 73 (563)
.+|.+++|||+|.+|+|||+ ....+..+-.|.+.|+++.|.+.- .+++|++||.|.+|+ ...++.++. |.+.|
T Consensus 51 Vs~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~V 130 (362)
T KOG0294|consen 51 VSGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQV 130 (362)
T ss_pred ecceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeeccccccc
Confidence 36889999999999999999 677788888999999999998864 799999999999999 778999999 99999
Q ss_pred EEEEEccCCcE-EEEeCCCcEEEEEcCCCceeceeeecccccccc----eeEEeeccCCceEEEeCCCCceeeeccc---
Q 008510 74 WDAKFLENGDI-VTACSDGVTRIWTVHSDKVADSLELEAYASELS----QYKLCRKKVGGLKLEDLPGLEALQIPGT--- 145 (563)
Q Consensus 74 ~~v~~~p~g~i-~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~----~~~~~~~~~~~i~~~d~~~~~~l~~~g~--- 145 (563)
+.++.+|.|++ ++.+.|+.+|.|++-.||.+....+......+. +-.+.......|.+|.+....++.....
T Consensus 131 t~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r 210 (362)
T KOG0294|consen 131 TDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKR 210 (362)
T ss_pred ceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhcccc
Confidence 99999999994 688999999999999998665555443322211 1112222224666776654333221111
Q ss_pred ------CCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEE---cCCCCeeeeecCCC
Q 008510 146 ------NAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVD---IGDGEPTRKLPYNR 216 (563)
Q Consensus 146 ------~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd---~~dg~~~~~~~~n~ 216 (563)
-++...++...+ ..+.+||-... ..-..+.+|+ ..|-++. .+++..+.+.+.|+
T Consensus 211 ~l~~~~l~~~~L~vG~d~-~~i~~~D~ds~---------------~~~~~~~AH~-~RVK~i~~~~~~~~~~lvTaSSDG 273 (362)
T KOG0294|consen 211 ILCATFLDGSELLVGGDN-EWISLKDTDSD---------------TPLTEFLAHE-NRVKDIASYTNPEHEYLVTASSDG 273 (362)
T ss_pred ceeeeecCCceEEEecCC-ceEEEeccCCC---------------ccceeeecch-hheeeeEEEecCCceEEEEeccCc
Confidence 123333333333 44445553221 1234466676 5565544 47889999999999
Q ss_pred CCChhHHHHH
Q 008510 217 SDNPYDAADK 226 (563)
Q Consensus 217 ~~~~w~~a~~ 226 (563)
.+.+|++...
T Consensus 274 ~I~vWd~~~~ 283 (362)
T KOG0294|consen 274 FIKVWDIDME 283 (362)
T ss_pred eEEEEEcccc
Confidence 9999998754
No 64
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.67 E-value=3.9e-16 Score=147.66 Aligned_cols=139 Identities=24% Similarity=0.367 Sum_probs=117.6
Q ss_pred CCCEEEEEECCCcEEEEcC-CCceeEE--------EecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVLME--------MVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE- 68 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~--------l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~- 68 (563)
||.++++||.||.|-+|+. +|+..+- +.-|...|.|++|+.|. .+++|+.||.|+||. +|.|++.+.
T Consensus 224 DgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdr 303 (508)
T KOG0275|consen 224 DGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDR 303 (508)
T ss_pred CCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhh
Confidence 6899999999999999999 7865443 44688999999999998 999999999999999 999999997
Q ss_pred -cCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeeccccccc--------ceeEEeeccCCceEEEeCCCCc
Q 008510 69 -HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASEL--------SQYKLCRKKVGGLKLEDLPGLE 138 (563)
Q Consensus 69 -h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v--------~~~~~~~~~~~~i~~~d~~~~~ 138 (563)
|+..|.|+.|+.|+. +++++.|.++|+--+++|++.. ++++|..-+ ...++++++||++++|+..+.+
T Consensus 304 AHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LK--EfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~Ktte 381 (508)
T KOG0275|consen 304 AHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLK--EFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTE 381 (508)
T ss_pred hhccCeeEEEEccCcchhhcccccceEEEeccccchhHH--HhcCccccccceEEcCCCCeEEEecCCccEEEecCcchh
Confidence 999999999999987 9999999999999999998543 233333222 2566788999999999998777
Q ss_pred eeee
Q 008510 139 ALQI 142 (563)
Q Consensus 139 ~l~~ 142 (563)
.+..
T Consensus 382 C~~T 385 (508)
T KOG0275|consen 382 CLST 385 (508)
T ss_pred hhhh
Confidence 6543
No 65
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.67 E-value=1.6e-15 Score=150.25 Aligned_cols=155 Identities=17% Similarity=0.277 Sum_probs=129.7
Q ss_pred CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEEE
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDA 76 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~v 76 (563)
+.+.|++++.|+.|+|+.+ ..+++.++.||.+.|.++.|+|.| .|+|||.|+|+|||+ ...+.+.+. |...|..+
T Consensus 328 ~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~ 407 (524)
T KOG0273|consen 328 SNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTI 407 (524)
T ss_pred cCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeE
Confidence 4567999999999999999 668999999999999999999999 999999999999999 778888888 99999999
Q ss_pred EEccCC---------c-EEEEeCCCcEEEEEcCCCceeceeeecccccccc--------eeEEeeccCCceEEEeCCCCc
Q 008510 77 KFLENG---------D-IVTACSDGVTRIWTVHSDKVADSLELEAYASELS--------QYKLCRKKVGGLKLEDLPGLE 138 (563)
Q Consensus 77 ~~~p~g---------~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~--------~~~~~~~~~~~i~~~d~~~~~ 138 (563)
.|+|+| . +++++.|++|++||+..+.+.. .+..|...|. .+..++..++++.+|+.+.+.
T Consensus 408 ~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~--~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~ 485 (524)
T KOG0273|consen 408 KWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIH--TLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGK 485 (524)
T ss_pred eecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeE--eeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchh
Confidence 999843 2 7999999999999999998554 3445555544 445567788999999999988
Q ss_pred eeeecccCCCeEEEEecCCC
Q 008510 139 ALQIPGTNAGQTKVVREGDN 158 (563)
Q Consensus 139 ~l~~~g~~dg~~~l~~~~~~ 158 (563)
.+...+..+|.+.+.++.++
T Consensus 486 l~~s~~~~~~Ifel~Wn~~G 505 (524)
T KOG0273|consen 486 LVKSYQGTGGIFELCWNAAG 505 (524)
T ss_pred eeEeecCCCeEEEEEEcCCC
Confidence 88887776776666555443
No 66
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=8.8e-16 Score=141.25 Aligned_cols=136 Identities=19% Similarity=0.305 Sum_probs=112.3
Q ss_pred CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC--eEEEEeCCCcEEEEc---CCceeEEEe-cCCcEE
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK---DGVCVQSIE-HPGCVW 74 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g--~l~s~s~D~tvriWd---~~~~~~~l~-h~~~V~ 74 (563)
.++.++++|.|+|||+|+. .+..+.++.||.+.||...|+|.. .++++|.|+++++|| .|+.+- |. |...+.
T Consensus 116 ~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~-i~ah~~Eil 194 (311)
T KOG0277|consen 116 RRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS-IEAHNSEIL 194 (311)
T ss_pred cceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE-EEeccceeE
Confidence 3567899999999999999 688899999999999999999974 899999999999999 566655 66 888999
Q ss_pred EEEEccCCc--EEEEeCCCcEEEEEcCCCceeceeeecccccccceeEE---------eeccCCceEEEeCCCCce
Q 008510 75 DAKFLENGD--IVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKL---------CRKKVGGLKLEDLPGLEA 139 (563)
Q Consensus 75 ~v~~~p~g~--i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~~~~~---------~~~~~~~i~~~d~~~~~~ 139 (563)
|+.|+.-.+ ++||+.|+.||+||++.-+ .+..++.+|.-.|.+..+ +++.|-++++||...+..
T Consensus 195 ~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r-~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds 269 (311)
T KOG0277|consen 195 CCDWSKYNHNVLATGGVDNLVRGWDIRNLR-TPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDS 269 (311)
T ss_pred eecccccCCcEEEecCCCceEEEEehhhcc-ccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchh
Confidence 999998544 8999999999999999887 455666666655554443 456678899999875543
No 67
>PTZ00421 coronin; Provisional
Probab=99.66 E-value=1.2e-14 Score=154.62 Aligned_cols=138 Identities=14% Similarity=0.221 Sum_probs=106.3
Q ss_pred CCEEEEEECCCcEEEEcCCC-cee-------------EEEecCCCcEEEEEEcC-CC-eEEEEeCCCcEEEEc--CC---
Q 008510 3 GVGIISASHDCTIRLWALTG-QVL-------------MEMVGHTAIVYSIDSHA-SG-LIVSGSEDRFAKIWK--DG--- 61 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~~g-~~i-------------~~l~gH~~~V~~v~~~p-~g-~l~s~s~D~tvriWd--~~--- 61 (563)
+..+++|+.+..+..|+..| ..+ ..+.||.+.|++++|+| ++ .+++||.|++|++|| ++
T Consensus 32 ~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~ 111 (493)
T PTZ00421 32 CSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLT 111 (493)
T ss_pred CCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccc
Confidence 46678888888888898732 222 24789999999999999 67 899999999999999 32
Q ss_pred ----ceeEEEe-cCCcEEEEEEccCC-c-EEEEeCCCcEEEEEcCCCceeceeeecccccccc--------eeEEeeccC
Q 008510 62 ----VCVQSIE-HPGCVWDAKFLENG-D-IVTACSDGVTRIWTVHSDKVADSLELEAYASELS--------QYKLCRKKV 126 (563)
Q Consensus 62 ----~~~~~l~-h~~~V~~v~~~p~g-~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~--------~~~~~~~~~ 126 (563)
.++..+. |...|++++|+|++ . +++|+.|++|++||+++++... .+..+...+. ...+++..|
T Consensus 112 ~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~--~l~~h~~~V~sla~spdG~lLatgs~D 189 (493)
T PTZ00421 112 QNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVE--VIKCHSDQITSLEWNLDGSLLCTTSKD 189 (493)
T ss_pred cccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEE--EEcCCCCceEEEEEECCCCEEEEecCC
Confidence 2456666 88999999999976 4 8999999999999999886432 3333433332 345567789
Q ss_pred CceEEEeCCCCceeee
Q 008510 127 GGLKLEDLPGLEALQI 142 (563)
Q Consensus 127 ~~i~~~d~~~~~~l~~ 142 (563)
+.|++||++....+..
T Consensus 190 g~IrIwD~rsg~~v~t 205 (493)
T PTZ00421 190 KKLNIIDPRDGTIVSS 205 (493)
T ss_pred CEEEEEECCCCcEEEE
Confidence 9999999987765543
No 68
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=1.8e-14 Score=136.88 Aligned_cols=207 Identities=15% Similarity=0.180 Sum_probs=152.0
Q ss_pred CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEe--CCCcEEEEc--CCceeEEEe-cCCcEE
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGS--EDRFAKIWK--DGVCVQSIE-HPGCVW 74 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s--~D~tvriWd--~~~~~~~l~-h~~~V~ 74 (563)
+|..+++|+.|-++++||. +|++++++..+...|..++|.... .++.++ +|.+||.-+ +.++++.+. |...|.
T Consensus 25 ~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~ 104 (311)
T KOG1446|consen 25 DGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVN 104 (311)
T ss_pred CCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEcCCCCceEE
Confidence 6899999999999999999 999999999998889999986654 444444 499999999 889999999 999999
Q ss_pred EEEEccCCc-EEEEeCCCcEEEEEcCCCceecee-----eecccccccceeEEeeccC-CceEEEeCCCC----------
Q 008510 75 DAKFLENGD-IVTACSDGVTRIWTVHSDKVADSL-----ELEAYASELSQYKLCRKKV-GGLKLEDLPGL---------- 137 (563)
Q Consensus 75 ~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~-~~i~~~d~~~~---------- 137 (563)
+++.+|-++ +++++.|++||+||+|..++.... ++.++. .....++.... ..|+++|++..
T Consensus 105 sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfD--p~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i 182 (311)
T KOG1446|consen 105 SLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFD--PEGLIFALANGSELIKLYDLRSFDKGPFTTFSI 182 (311)
T ss_pred EEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcceeEC--CCCcEEEEecCCCeEEEEEecccCCCCceeEcc
Confidence 999999888 999999999999999977643221 222332 23344443333 38999998633
Q ss_pred ------ceeeecccCCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeee
Q 008510 138 ------EALQIPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTR 210 (563)
Q Consensus 138 ------~~l~~~g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~ 210 (563)
+.-...+++||...++.... ..+++-|.-.|. ....+.... +.. ..-.+..+ |||+.++
T Consensus 183 ~~~~~~ew~~l~FS~dGK~iLlsT~~-s~~~~lDAf~G~--~~~tfs~~~----------~~~-~~~~~a~ftPds~Fvl 248 (311)
T KOG1446|consen 183 TDNDEAEWTDLEFSPDGKSILLSTNA-SFIYLLDAFDGT--VKSTFSGYP----------NAG-NLPLSATFTPDSKFVL 248 (311)
T ss_pred CCCCccceeeeEEcCCCCEEEEEeCC-CcEEEEEccCCc--EeeeEeecc----------CCC-CcceeEEECCCCcEEE
Confidence 22233478888888888776 556667766654 112222211 111 11145566 9999999
Q ss_pred eecCCCCCChhHHH
Q 008510 211 KLPYNRSDNPYDAA 224 (563)
Q Consensus 211 ~~~~n~~~~~w~~a 224 (563)
.+.+|+.+.+|++.
T Consensus 249 ~gs~dg~i~vw~~~ 262 (311)
T KOG1446|consen 249 SGSDDGTIHVWNLE 262 (311)
T ss_pred EecCCCcEEEEEcC
Confidence 99999999999984
No 69
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.65 E-value=2.3e-16 Score=161.66 Aligned_cols=196 Identities=19% Similarity=0.307 Sum_probs=138.2
Q ss_pred CCEEEEEECCCcEEEEcC---CCc----eeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CC--ceeEEEe-c
Q 008510 3 GVGIISASHDCTIRLWAL---TGQ----VLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DG--VCVQSIE-H 69 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~---~g~----~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~--~~~~~l~-h 69 (563)
+++|+|||.||.||+|+. .++ ++..++.|.++|.++....+| .++|||.|-+|++|+ .+ -|+.+++ |
T Consensus 37 ~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H 116 (735)
T KOG0308|consen 37 GRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTH 116 (735)
T ss_pred CceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcc
Confidence 567999999999999998 232 578899999999999998888 899999999999999 33 6888888 9
Q ss_pred CCcEEEEEE-ccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccccceeEEeeccCCceEEEeCCCCceeeecccCC
Q 008510 70 PGCVWDAKF-LENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLCRKKVGGLKLEDLPGLEALQIPGTNA 147 (563)
Q Consensus 70 ~~~V~~v~~-~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~d~~~~~~l~~~g~~d 147 (563)
.+.|.|+++ -++.. +|+||.|+.|.+||+.++.. ..+..+.....+...++. ...++...-...
T Consensus 117 ~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~---~l~~s~n~~t~~sl~sG~-----------k~siYSLA~N~t 182 (735)
T KOG0308|consen 117 KDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTA---TLVASFNNVTVNSLGSGP-----------KDSIYSLAMNQT 182 (735)
T ss_pred cchheeeeecccCceeEEecCCCccEEEEEccCcch---hhhhhccccccccCCCCC-----------ccceeeeecCCc
Confidence 999999999 66666 89999999999999998841 011112111111110000 011111112222
Q ss_pred CeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeeeecCCCCCChhHHHHH
Q 008510 148 GQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRKLPYNRSDNPYDAADK 226 (563)
Q Consensus 148 g~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~~~~~w~~a~~ 226 (563)
| +.++.++..+....||..++. +..-+.||. |.|..+-+ .||..+++.+.|+++++|+..++
T Consensus 183 ~-t~ivsGgtek~lr~wDprt~~---------------kimkLrGHT-dNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQ 245 (735)
T KOG0308|consen 183 G-TIIVSGGTEKDLRLWDPRTCK---------------KIMKLRGHT-DNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQ 245 (735)
T ss_pred c-eEEEecCcccceEEecccccc---------------ceeeeeccc-cceEEEEEcCCCCeEeecCCCceEEeeecccc
Confidence 3 344444444556677765542 223355777 77888888 89999999999999999999877
Q ss_pred HHH
Q 008510 227 WLL 229 (563)
Q Consensus 227 f~~ 229 (563)
-|.
T Consensus 246 rCl 248 (735)
T KOG0308|consen 246 RCL 248 (735)
T ss_pred cee
Confidence 553
No 70
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.65 E-value=2.2e-15 Score=160.67 Aligned_cols=212 Identities=20% Similarity=0.295 Sum_probs=156.4
Q ss_pred CCEEEEEECCCcEEEEcC-CCceeEE-EecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEEE
Q 008510 3 GVGIISASHDCTIRLWAL-TGQVLME-MVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDA 76 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~-~g~~i~~-l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~v 76 (563)
++++.+++.|.+|++|+. ++..+.. +.||.+.|+++++...+ .+++|+.|+++|+|| +|.|.+++. |+..|.++
T Consensus 218 ~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~ 297 (537)
T KOG0274|consen 218 DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCL 297 (537)
T ss_pred cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEE
Confidence 568999999999999999 8888887 99999999999998644 999999999999999 999999999 99999999
Q ss_pred EEccCCcEEEEeCCCcEEEEEcCCCceeceeeecccccccc------eeEEeeccCCceEEEeCCCCceeeec-ccCCCe
Q 008510 77 KFLENGDIVTACSDGVTRIWTVHSDKVADSLELEAYASELS------QYKLCRKKVGGLKLEDLPGLEALQIP-GTNAGQ 149 (563)
Q Consensus 77 ~~~p~g~i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~------~~~~~~~~~~~i~~~d~~~~~~l~~~-g~~dg~ 149 (563)
...+. .+++|+.|.+|+||++.++.... .+.+|...|. ...+++..++.|++||....+.+... ||..-.
T Consensus 298 ~~~~~-~~~sgs~D~tVkVW~v~n~~~l~--l~~~h~~~V~~v~~~~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V 374 (537)
T KOG0274|consen 298 TIDPF-LLVSGSRDNTVKVWDVTNGACLN--LLRGHTGPVNCVQLDEPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRV 374 (537)
T ss_pred EccCc-eEeeccCCceEEEEeccCcceEE--EeccccccEEEEEecCCEEEEEecCceEEEEEhhhceeeeeecCCcceE
Confidence 87543 37889999999999999887554 3333555544 45668889999999999988777655 776666
Q ss_pred EEEEecC-CCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEcCCCCeeeeecCCCCCChhHHHHH
Q 008510 150 TKVVREG-DNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDIGDGEPTRKLPYNRSDNPYDAADK 226 (563)
Q Consensus 150 ~~l~~~~-~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~~dg~~~~~~~~n~~~~~w~~a~~ 226 (563)
+.++..+ ........|...+.|+..... .....+.||. ..|..+. ..++.+.+...|+++++|++.+.
T Consensus 375 ~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~-------~c~~tl~~h~-~~v~~l~-~~~~~Lvs~~aD~~Ik~WD~~~~ 443 (537)
T KOG0274|consen 375 YSLIVDSENRLLSGSLDTTIKVWDLRTKR-------KCIHTLQGHT-SLVSSLL-LRDNFLVSSSADGTIKLWDAEEG 443 (537)
T ss_pred EEEEecCcceEEeeeeccceEeecCCchh-------hhhhhhcCCc-ccccccc-cccceeEeccccccEEEeecccC
Confidence 6655554 322222333334444432110 1233455665 4443332 34566888888888889976544
No 71
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.65 E-value=1e-14 Score=134.81 Aligned_cols=214 Identities=19% Similarity=0.302 Sum_probs=155.3
Q ss_pred CCCCEEEEEECCCcEEEEcCC-Ccee--EEEecCCCcEEEEEEcCCC--eEEEEeCCCcEEEEc--CCceeEEEecCCcE
Q 008510 1 MPGVGIISASHDCTIRLWALT-GQVL--MEMVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK--DGVCVQSIEHPGCV 73 (563)
Q Consensus 1 ~~g~~l~s~s~DgtIrlWd~~-g~~i--~~l~gH~~~V~~v~~~p~g--~l~s~s~D~tvriWd--~~~~~~~l~h~~~V 73 (563)
.+|..+++|+.|+++++|++. ++.. ..+.||++.|-.++|+|.. .+++++.|++||+|| +++|.+.+.....-
T Consensus 30 ~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~en 109 (313)
T KOG1407|consen 30 CDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGEN 109 (313)
T ss_pred ccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcc
Confidence 378999999999999999993 3332 3467999999999999875 899999999999999 89999998876666
Q ss_pred EEEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccc-----cceeEEeeccCCceEEEeCCCCce--------
Q 008510 74 WDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASE-----LSQYKLCRKKVGGLKLEDLPGLEA-------- 139 (563)
Q Consensus 74 ~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~~i~~~d~~~~~~-------- 139 (563)
-.+.|+|+|. ++.|..|..|.+.|.++.+....++...+.+. ...+.+.....|+|.+...|.-+.
T Consensus 110 i~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~ 189 (313)
T KOG1407|consen 110 INITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHP 189 (313)
T ss_pred eEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCC
Confidence 6789999998 99999999999999999886655554444333 234555666778999988875543
Q ss_pred ---eeecccCCCeEEEEecCCCeEEEEEecccceEEEeCc-----EeeCCCCCCCceeecCcccCcEEEEEc-CCCCeee
Q 008510 140 ---LQIPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGE-----VVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTR 210 (563)
Q Consensus 140 ---l~~~g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~-----v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~ 210 (563)
+.+...++|.+..+++.| ..+.+||...-.+.+... |..-+-+.+++.+-.|.+ |+.+++.. ++|..+.
T Consensus 190 snCicI~f~p~GryfA~GsAD-AlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSE-Dh~IDIA~vetGd~~~ 267 (313)
T KOG1407|consen 190 SNCICIEFDPDGRYFATGSAD-ALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASE-DHFIDIAEVETGDRVW 267 (313)
T ss_pred cceEEEEECCCCceEeecccc-ceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCc-cceEEeEecccCCeEE
Confidence 333466778877777766 667789987655443311 111111222455555666 66666666 7777766
Q ss_pred eecCCC
Q 008510 211 KLPYNR 216 (563)
Q Consensus 211 ~~~~n~ 216 (563)
..+.+.
T Consensus 268 eI~~~~ 273 (313)
T KOG1407|consen 268 EIPCEG 273 (313)
T ss_pred EeeccC
Confidence 666555
No 72
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.65 E-value=5.1e-15 Score=156.62 Aligned_cols=162 Identities=17% Similarity=0.273 Sum_probs=119.8
Q ss_pred CCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC--eEEEEeCCCcEEEEc-CCceeEEEe-cCCcEEEEE
Q 008510 3 GVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK-DGVCVQSIE-HPGCVWDAK 77 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g--~l~s~s~D~tvriWd-~~~~~~~l~-h~~~V~~v~ 77 (563)
.++|+|+|.|.|||||++ ..+|+++|. |.++|+||+|+|-. +|+|||-|+.||||+ ....+-... ...-|++++
T Consensus 380 n~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvc 458 (712)
T KOG0283|consen 380 NNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVC 458 (712)
T ss_pred CCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEE
Confidence 468999999999999999 788999885 99999999999954 999999999999999 444443444 557999999
Q ss_pred EccCCc-EEEEeCCCcEEEEEcCCCceeceeeeccccc------ccc---------eeEEeeccCCceEEEeCCCCce--
Q 008510 78 FLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYAS------ELS---------QYKLCRKKVGGLKLEDLPGLEA-- 139 (563)
Q Consensus 78 ~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~------~v~---------~~~~~~~~~~~i~~~d~~~~~~-- 139 (563)
|.|+|. .+.|+.+|.+++|+.+.-+......+..... .+. ...+....|..|+++|++....
T Consensus 459 y~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~ 538 (712)
T KOG0283|consen 459 YSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVH 538 (712)
T ss_pred eccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhh
Confidence 999999 8999999999999998776544333332211 111 1244556677888888843322
Q ss_pred -----------eeecccCCCeEEEEecCCCeEEEEEec
Q 008510 140 -----------LQIPGTNAGQTKVVREGDNGVAYSWDM 166 (563)
Q Consensus 140 -----------l~~~g~~dg~~~l~~~~~~~~~~~wd~ 166 (563)
+....+.||...+..+ ++..+|+|+.
T Consensus 539 KfKG~~n~~SQ~~Asfs~Dgk~IVs~s-eDs~VYiW~~ 575 (712)
T KOG0283|consen 539 KFKGFRNTSSQISASFSSDGKHIVSAS-EDSWVYIWKN 575 (712)
T ss_pred hhcccccCCcceeeeEccCCCEEEEee-cCceEEEEeC
Confidence 2233455676666665 4466777774
No 73
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.64 E-value=4.7e-14 Score=138.49 Aligned_cols=202 Identities=27% Similarity=0.479 Sum_probs=145.6
Q ss_pred CCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEEEE
Q 008510 3 GVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDAK 77 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~v~ 77 (563)
++.+++++.||.|++|++ +++.+..+.+|...|.+++|+|++ .+++++.|+.+++|+ +++....+. |...+.+++
T Consensus 63 ~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~ 142 (289)
T cd00200 63 GTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVA 142 (289)
T ss_pred CCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEE
Confidence 568999999999999999 668888999999999999999998 778888899999999 578888887 888999999
Q ss_pred EccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccccc--------eeEEeeccCCceEEEeCCCCceeeec-ccCC
Q 008510 78 FLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELS--------QYKLCRKKVGGLKLEDLPGLEALQIP-GTNA 147 (563)
Q Consensus 78 ~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~--------~~~~~~~~~~~i~~~d~~~~~~l~~~-g~~d 147 (563)
|+|++. +++++.|+.|++||+++++...... .+...+. ...+.+..++.+.+||++....+... ++..
T Consensus 143 ~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~ 220 (289)
T cd00200 143 FSPDGTFVASSSQDGTIKLWDLRTGKCVATLT--GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHEN 220 (289)
T ss_pred EcCcCCEEEEEcCCCcEEEEEccccccceeEe--cCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCC
Confidence 999988 5666669999999998776433222 2222222 24455556899999999865554433 3333
Q ss_pred CeEEEEecCC---------CeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeeeecCCCC
Q 008510 148 GQTKVVREGD---------NGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRKLPYNRS 217 (563)
Q Consensus 148 g~~~l~~~~~---------~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~~ 217 (563)
....+...++ ++.+++|+...+. ....+.++. ..+.++.+ ++|..++....|+.
T Consensus 221 ~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~---------------~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~d~~ 284 (289)
T cd00200 221 GVNSVAFSPDGYLLASGSEDGTIRVWDLRTGE---------------CVQTLSGHT-NSVTSLAWSPDGKRLASGSADGT 284 (289)
T ss_pred ceEEEEEcCCCcEEEEEcCCCcEEEEEcCCce---------------eEEEccccC-CcEEEEEECCCCCEEEEecCCCe
Confidence 3333333332 2344455543321 112233443 56889999 88888999999998
Q ss_pred CChhH
Q 008510 218 DNPYD 222 (563)
Q Consensus 218 ~~~w~ 222 (563)
+.+|+
T Consensus 285 i~iw~ 289 (289)
T cd00200 285 IRIWD 289 (289)
T ss_pred EEecC
Confidence 88884
No 74
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.63 E-value=5.6e-15 Score=147.27 Aligned_cols=191 Identities=20% Similarity=0.285 Sum_probs=133.3
Q ss_pred CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC--eEEEEeCCCcEEEEc-CCceeE-EEe-cCCcEEE
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK-DGVCVQ-SIE-HPGCVWD 75 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g--~l~s~s~D~tvriWd-~~~~~~-~l~-h~~~V~~ 75 (563)
||+.++.|...|.|+++|. +...++.+.+|+.+|..+.|+|.+ .+++|+.|+.+++|| +...++ .+. |++.|+|
T Consensus 79 DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~ 158 (487)
T KOG0310|consen 79 DGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRC 158 (487)
T ss_pred CCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEe
Confidence 7999999999999999998 555788999999999999999976 899999999999999 555554 555 9999999
Q ss_pred EEEccCCc--EEEEeCCCcEEEEEcCCCceeceeeecccccccce-------eEEeeccCCceEEEeCCCC-ceeeecc-
Q 008510 76 AKFLENGD--IVTACSDGVTRIWTVHSDKVADSLELEAYASELSQ-------YKLCRKKVGGLKLEDLPGL-EALQIPG- 144 (563)
Q Consensus 76 v~~~p~g~--i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~~-------~~~~~~~~~~i~~~d~~~~-~~l~~~g- 144 (563)
.+|+|-.+ ++|||.||+||+||+++.. ....++ .|...+.. ..+.......+++||+.++ ..+...+
T Consensus 159 g~~~~~~~hivvtGsYDg~vrl~DtR~~~-~~v~el-nhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~~~~ 236 (487)
T KOG0310|consen 159 GDISPANDHIVVTGSYDGKVRLWDTRSLT-SRVVEL-NHGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLTSMFN 236 (487)
T ss_pred eccccCCCeEEEecCCCceEEEEEeccCC-ceeEEe-cCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehhhhhc
Confidence 99999655 8999999999999999874 111121 23333333 3334444568999999844 3433334
Q ss_pred cCCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEcCCCCeeeeec
Q 008510 145 TNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDIGDGEPTRKLP 213 (563)
Q Consensus 145 ~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~~dg~~~~~~~ 213 (563)
|..-.+.+.-..++ .++.+++-++ ..+.|+-..|.-|++|.++.+ ++++.
T Consensus 237 H~KtVTcL~l~s~~----------------~rLlS~sLD~-~VKVfd~t~~Kvv~s~~~~~p--vLsia 286 (487)
T KOG0310|consen 237 HNKTVTCLRLASDS----------------TRLLSGSLDR-HVKVFDTTNYKVVHSWKYPGP--VLSIA 286 (487)
T ss_pred ccceEEEEEeecCC----------------ceEeeccccc-ceEEEEccceEEEEeeecccc--eeeEE
Confidence 33333333333321 1223332222 556677666777889998765 44443
No 75
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.62 E-value=2.5e-14 Score=131.39 Aligned_cols=166 Identities=17% Similarity=0.324 Sum_probs=122.2
Q ss_pred CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cC-CcEEE
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HP-GCVWD 75 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~-~~V~~ 75 (563)
+|+.++|||.||++||||+ .-.|-+. ..|.++|.+|..+|+. .+++|..+|.||||| ...|.+.+- .. ..|.+
T Consensus 94 dgrWMyTgseDgt~kIWdlR~~~~qR~-~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~s 172 (311)
T KOG0315|consen 94 DGRWMYTGSEDGTVKIWDLRSLSCQRN-YQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQS 172 (311)
T ss_pred cCeEEEecCCCceEEEEeccCcccchh-ccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceee
Confidence 6899999999999999999 5455444 4588999999999987 999999999999999 555665554 33 38999
Q ss_pred EEEccCCc-EEEEeCCCcEEEEEcCCCceec----eeeecccccccc--------eeEEeeccCCceEEEeCCCCcee--
Q 008510 76 AKFLENGD-IVTACSDGVTRIWTVHSDKVAD----SLELEAYASELS--------QYKLCRKKVGGLKLEDLPGLEAL-- 140 (563)
Q Consensus 76 v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~----~~~~~~~~~~v~--------~~~~~~~~~~~i~~~d~~~~~~l-- 140 (563)
++..|+|. ++.+-.-|..++|++-.+.... ...++++...+- .+..+.+.+.++++|...+.-.+
T Consensus 173 l~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~ 252 (311)
T KOG0315|consen 173 LTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLEL 252 (311)
T ss_pred EEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEE
Confidence 99999999 7777888999999997754322 222333433322 34455677788888888765111
Q ss_pred e----------ecccCCCeEEEEecCCCeEEEEEecccc
Q 008510 141 Q----------IPGTNAGQTKVVREGDNGVAYSWDMKEQ 169 (563)
Q Consensus 141 ~----------~~g~~dg~~~l~~~~~~~~~~~wd~~~~ 169 (563)
. ..++.||++.+..++| ..+..|+...+
T Consensus 253 ~l~gh~rWvWdc~FS~dg~YlvTassd-~~~rlW~~~~~ 290 (311)
T KOG0315|consen 253 VLTGHQRWVWDCAFSADGEYLVTASSD-HTARLWDLSAG 290 (311)
T ss_pred EeecCCceEEeeeeccCccEEEecCCC-CceeecccccC
Confidence 1 1245678877777666 67778887654
No 76
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.62 E-value=5.3e-15 Score=146.36 Aligned_cols=193 Identities=20% Similarity=0.271 Sum_probs=134.7
Q ss_pred CEEEEEECCCcEEEEcCC--C------ceeEEEecCCCcEEEEEEcCCC--eEEEEeCCCcEEEEc-C--C-ceeEEEe-
Q 008510 4 VGIISASHDCTIRLWALT--G------QVLMEMVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK-D--G-VCVQSIE- 68 (563)
Q Consensus 4 ~~l~s~s~DgtIrlWd~~--g------~~i~~l~gH~~~V~~v~~~p~g--~l~s~s~D~tvriWd-~--~-~~~~~l~- 68 (563)
..+++|+.|++|++||++ + .+...+.+|++.|..|+|++.. .|+++++|+.+.||| . . ++.....
T Consensus 191 g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~a 270 (422)
T KOG0264|consen 191 GTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKA 270 (422)
T ss_pred eeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccc
Confidence 468999999999999992 2 2456789999999999999965 899999999999999 3 2 2333344
Q ss_pred cCCcEEEEEEccCCc--EEEEeCCCcEEEEEcCCCceeceeeecccccccceeEEeeccCCceEEEeCCCCceeeecccC
Q 008510 69 HPGCVWDAKFLENGD--IVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLCRKKVGGLKLEDLPGLEALQIPGTN 146 (563)
Q Consensus 69 h~~~V~~v~~~p~g~--i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~d~~~~~~l~~~g~~ 146 (563)
|++.|+|++|+|-+. |||||.|++|++||+|.-+. +...+.+|. .+++++..++
T Consensus 271 h~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~-~lh~~e~H~-----------------------dev~~V~WSP 326 (422)
T KOG0264|consen 271 HSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK-PLHTFEGHE-----------------------DEVFQVEWSP 326 (422)
T ss_pred cCCceeEEEeCCCCCceEEeccCCCcEEEeechhccc-CceeccCCC-----------------------cceEEEEeCC
Confidence 999999999999665 89999999999999998762 222333333 3444455555
Q ss_pred CCeEEEEecCCCeEEEEEecccceEEEeCcEee--CCCCCC-C-ceeecCcccCcEEEEEc--CCCCeeeeecCCCCCCh
Q 008510 147 AGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVD--GPDDGM-N-RPILDGIQYDYVFDVDI--GDGEPTRKLPYNRSDNP 220 (563)
Q Consensus 147 dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~--~~~~~~-~-~~~~~g~~~d~v~~vd~--~dg~~~~~~~~n~~~~~ 220 (563)
.....+..++.+....+||... +|+-.. .+.++. . ...+-||. ..|.++++ .+.-.+.+.+-|....+
T Consensus 327 h~etvLASSg~D~rl~vWDls~-----ig~eq~~eda~dgppEllF~HgGH~-~kV~DfsWnp~ePW~I~SvaeDN~LqI 400 (422)
T KOG0264|consen 327 HNETVLASSGTDRRLNVWDLSR-----IGEEQSPEDAEDGPPELLFIHGGHT-AKVSDFSWNPNEPWTIASVAEDNILQI 400 (422)
T ss_pred CCCceeEecccCCcEEEEeccc-----cccccChhhhccCCcceeEEecCcc-cccccccCCCCCCeEEEEecCCceEEE
Confidence 5555566666666666777521 121111 011111 2 24455665 77888888 34445888999999999
Q ss_pred hHHHHH
Q 008510 221 YDAADK 226 (563)
Q Consensus 221 w~~a~~ 226 (563)
|..++.
T Consensus 401 W~~s~~ 406 (422)
T KOG0264|consen 401 WQMAEN 406 (422)
T ss_pred eecccc
Confidence 998754
No 77
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.62 E-value=6e-15 Score=143.32 Aligned_cols=160 Identities=24% Similarity=0.396 Sum_probs=120.5
Q ss_pred CCCEEEEEECCCcEEEEcC-C-C------ceeEEEecCCCcEEEEEEcCCC--eEEEEeCCCcEEEEc--CCceeEEEec
Q 008510 2 PGVGIISASHDCTIRLWAL-T-G------QVLMEMVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK--DGVCVQSIEH 69 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~-g------~~i~~l~gH~~~V~~v~~~p~g--~l~s~s~D~tvriWd--~~~~~~~l~h 69 (563)
++..|||||.|.+|+||.+ + | +++..+.||+..|--|.|+|.- .++|+|.|.+|.+|+ +++.+-++.|
T Consensus 93 nD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~h 172 (472)
T KOG0303|consen 93 NDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLDH 172 (472)
T ss_pred CCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecCC
Confidence 4678999999999999998 3 2 5688999999999999999975 799999999999999 8888888889
Q ss_pred CCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccccc------------eeEEeeccCCceEEEeCCC
Q 008510 70 PGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELS------------QYKLCRKKVGGLKLEDLPG 136 (563)
Q Consensus 70 ~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~------------~~~~~~~~~~~i~~~d~~~ 136 (563)
++-|++++|+.||. +++.|.|..|||||.++++..... .+|++.-. .--++..++..+-+||-..
T Consensus 173 pd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~--~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~n 250 (472)
T KOG0303|consen 173 PDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEG--VAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNN 250 (472)
T ss_pred CCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeec--ccccCCCcceeEEeccCceeeeccccccccceeccCccc
Confidence 99999999999998 999999999999999999865433 34443311 1112334556777887542
Q ss_pred Cc---eeeecccCCCeEEEEecCCCeEEEE
Q 008510 137 LE---ALQIPGTNAGQTKVVREGDNGVAYS 163 (563)
Q Consensus 137 ~~---~l~~~g~~dg~~~l~~~~~~~~~~~ 163 (563)
.+ .+...-++.|...-+...|..++|+
T Consensus 251 l~eP~~~~elDtSnGvl~PFyD~dt~ivYl 280 (472)
T KOG0303|consen 251 LEEPIALQELDTSNGVLLPFYDPDTSIVYL 280 (472)
T ss_pred ccCcceeEEeccCCceEEeeecCCCCEEEE
Confidence 22 2222244455555555555455443
No 78
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.61 E-value=8.2e-15 Score=146.61 Aligned_cols=109 Identities=26% Similarity=0.347 Sum_probs=83.1
Q ss_pred ecCCCcEEEEEEcCCC--eEEEEeCCCcEEEEc---CCceeEEEec------CCcEEEEEEccCCc-EEEEeCCCcEEEE
Q 008510 29 VGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK---DGVCVQSIEH------PGCVWDAKFLENGD-IVTACSDGVTRIW 96 (563)
Q Consensus 29 ~gH~~~V~~v~~~p~g--~l~s~s~D~tvriWd---~~~~~~~l~h------~~~V~~v~~~p~g~-i~sgs~Dg~Irvw 96 (563)
+||...++|.+|+|.. .|+|||.||++|||+ ..+.++.|.+ .-.+.+++|+|+|. ||+||.||.|.+|
T Consensus 265 KGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W 344 (641)
T KOG0772|consen 265 KGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIW 344 (641)
T ss_pred CCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeee
Confidence 6999999999999986 899999999999999 4566677762 12689999999999 9999999999999
Q ss_pred EcCCCceeceeee-ccccc--ccce--------eEEeeccCCceEEEeCCCC
Q 008510 97 TVHSDKVADSLEL-EAYAS--ELSQ--------YKLCRKKVGGLKLEDLPGL 137 (563)
Q Consensus 97 d~~~~~~~~~~~~-~~~~~--~v~~--------~~~~~~~~~~i~~~d~~~~ 137 (563)
+.++....+...+ .+|.. .+.+ +.++.+.|+.+++||++..
T Consensus 345 ~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~ 396 (641)
T KOG0772|consen 345 DKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQF 396 (641)
T ss_pred ecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecccc
Confidence 9865543322222 23333 2333 3345677899999999754
No 79
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.61 E-value=1e-14 Score=145.24 Aligned_cols=203 Identities=20% Similarity=0.328 Sum_probs=145.7
Q ss_pred CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC--eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEE
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWD 75 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g--~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~ 75 (563)
+|..|+|+|.|++||+||+ +|+++..+.. ...++|+.|+|++ .|++|+.|+.|+.|| +++.+|.+. |-+.|..
T Consensus 269 ~g~~fLS~sfD~~lKlwDtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~ 347 (503)
T KOG0282|consen 269 CGTSFLSASFDRFLKLWDTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILD 347 (503)
T ss_pred cCCeeeeeecceeeeeeccccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheee
Confidence 4789999999999999999 9999988742 3456999999997 799999999999999 888888888 7789999
Q ss_pred EEEccCCc-EEEEeCCCcEEEEEcCCCceecee------eecccccccceeEE-eeccCCceEEEeCCCC----------
Q 008510 76 AKFLENGD-IVTACSDGVTRIWTVHSDKVADSL------ELEAYASELSQYKL-CRKKVGGLKLEDLPGL---------- 137 (563)
Q Consensus 76 v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~------~~~~~~~~v~~~~~-~~~~~~~i~~~d~~~~---------- 137 (563)
+.|.++|+ +++.+.|+++|||+.+.+-..... ......-....-.+ +..-++.|-++.....
T Consensus 348 i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~fe 427 (503)
T KOG0282|consen 348 ITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFE 427 (503)
T ss_pred eEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhc
Confidence 99999998 999999999999999876532211 11111112222222 3334455555554211
Q ss_pred --c----eeeecccCCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEcC--CCCee
Q 008510 138 --E----ALQIPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDIG--DGEPT 209 (563)
Q Consensus 138 --~----~l~~~g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~~--dg~~~ 209 (563)
. ...+-+++||.+.+.++++ +.++.||-.+-. + ...+++|. .-+..+++. ....+
T Consensus 428 Gh~vaGys~~v~fSpDG~~l~SGdsd-G~v~~wdwkt~k------l---------~~~lkah~-~~ci~v~wHP~e~Skv 490 (503)
T KOG0282|consen 428 GHSVAGYSCQVDFSPDGRTLCSGDSD-GKVNFWDWKTTK------L---------VSKLKAHD-QPCIGVDWHPVEPSKV 490 (503)
T ss_pred ceeccCceeeEEEcCCCCeEEeecCC-ccEEEeechhhh------h---------hhccccCC-cceEEEEecCCCccee
Confidence 1 1233478999988888777 667788854421 1 11133332 557888883 44558
Q ss_pred eeecCCCCCChhH
Q 008510 210 RKLPYNRSDNPYD 222 (563)
Q Consensus 210 ~~~~~n~~~~~w~ 222 (563)
++.++|+.+++|+
T Consensus 491 at~~w~G~Ikiwd 503 (503)
T KOG0282|consen 491 ATCGWDGLIKIWD 503 (503)
T ss_pred EecccCceeEecC
Confidence 9999999999985
No 80
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.61 E-value=5.8e-14 Score=132.36 Aligned_cols=135 Identities=21% Similarity=0.346 Sum_probs=105.9
Q ss_pred CCEEEEEECCCcEEEEcC--CCcee-EEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEecCCcEEEE
Q 008510 3 GVGIISASHDCTIRLWAL--TGQVL-MEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIEHPGCVWDA 76 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~--~g~~i-~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~h~~~V~~v 76 (563)
+..++.+|+||+||+|++ +|..+ +....|.++|.+++|+.|| .+++|+.|+.+++|| +++..+.-.|.+.|.++
T Consensus 40 ~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~ 119 (347)
T KOG0647|consen 40 DNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQVAAHDAPVKTC 119 (347)
T ss_pred CceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCeeeeeecccceeEE
Confidence 456789999999999999 45544 3456799999999999999 999999999999999 66544444499999999
Q ss_pred EEccCCc---EEEEeCCCcEEEEEcCCCceeceeeecccc---cccceeEEeeccCCceEEEeCCCC
Q 008510 77 KFLENGD---IVTACSDGVTRIWTVHSDKVADSLELEAYA---SELSQYKLCRKKVGGLKLEDLPGL 137 (563)
Q Consensus 77 ~~~p~g~---i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~i~~~d~~~~ 137 (563)
.|-+... ++|||.|.+||.||.|+........+..-. +....+...+..+..|.++.+..+
T Consensus 120 ~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~ 186 (347)
T KOG0647|consen 120 HWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENP 186 (347)
T ss_pred EEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCC
Confidence 9987554 899999999999999988755544443221 123355666777889999999544
No 81
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.60 E-value=9.7e-15 Score=149.84 Aligned_cols=159 Identities=21% Similarity=0.326 Sum_probs=126.2
Q ss_pred CCCEEEEEECCCcEEEEcC-CC--ceeEEEecCCCcEEEEEE-cCCC-eEEEEeCCCcEEEEc--CC--ceeEE------
Q 008510 2 PGVGIISASHDCTIRLWAL-TG--QVLMEMVGHTAIVYSIDS-HASG-LIVSGSEDRFAKIWK--DG--VCVQS------ 66 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g--~~i~~l~gH~~~V~~v~~-~p~g-~l~s~s~D~tvriWd--~~--~~~~~------ 66 (563)
+|+.|+|||.|.||++|+. .+ -|..++..|.++|.|+++ -++. .+||||-|+.|.+|| ++ +.+.+
T Consensus 84 ~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~ 163 (735)
T KOG0308|consen 84 NGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTV 163 (735)
T ss_pred CCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhcccccc
Confidence 4678999999999999999 44 688999999999999999 6666 899999999999999 44 22222
Q ss_pred --Ee--cCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccccc--------eeEEeeccCCceEEEe
Q 008510 67 --IE--HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELS--------QYKLCRKKVGGLKLED 133 (563)
Q Consensus 67 --l~--h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~--------~~~~~~~~~~~i~~~d 133 (563)
+. +..+|++++.+++|. |++|+..+.+|+||.++.+.. ..+++|.+.|. ...+++++||.|++||
T Consensus 164 ~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~ki--mkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWd 241 (735)
T KOG0308|consen 164 NSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKI--MKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWD 241 (735)
T ss_pred ccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccce--eeeeccccceEEEEEcCCCCeEeecCCCceEEeee
Confidence 22 556899999999998 899999999999999998733 34556666554 4566788999999999
Q ss_pred CCCCceeeec-ccCCCeEEEEecCCCeEEE
Q 008510 134 LPGLEALQIP-GTNAGQTKVVREGDNGVAY 162 (563)
Q Consensus 134 ~~~~~~l~~~-g~~dg~~~l~~~~~~~~~~ 162 (563)
+..+..+... .|++|...+..+.+-..+|
T Consensus 242 LgqQrCl~T~~vH~e~VWaL~~~~sf~~vY 271 (735)
T KOG0308|consen 242 LGQQRCLATYIVHKEGVWALQSSPSFTHVY 271 (735)
T ss_pred ccccceeeeEEeccCceEEEeeCCCcceEE
Confidence 9988887765 7888877666665433333
No 82
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.60 E-value=1.6e-13 Score=134.62 Aligned_cols=204 Identities=25% Similarity=0.417 Sum_probs=145.3
Q ss_pred CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEEE
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDA 76 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~v 76 (563)
+++++++++.||.|++|+. +++....+.+|...+.++.|+|++ .+++++.|+.+++|+ .++.+..+. |...+.++
T Consensus 20 ~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~ 99 (289)
T cd00200 20 DGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSV 99 (289)
T ss_pred CCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEE
Confidence 3688999999999999999 777888899999999999999998 999999999999999 556677776 77799999
Q ss_pred EEccCCc-EEEEeCCCcEEEEEcCCCceeceeeeccccccc--------ceeEEeeccCCceEEEeCCCCceeeec----
Q 008510 77 KFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASEL--------SQYKLCRKKVGGLKLEDLPGLEALQIP---- 143 (563)
Q Consensus 77 ~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v--------~~~~~~~~~~~~i~~~d~~~~~~l~~~---- 143 (563)
.|+|++. +++++.||.|++||+++++.... +..+...+ ....+.+..++.+.+||++..+.+...
T Consensus 100 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~ 177 (289)
T cd00200 100 AFSPDGRILSSSSRDKTIKVWDVETGKCLTT--LRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHT 177 (289)
T ss_pred EEcCCCCEEEEecCCCeEEEEECCCcEEEEE--eccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCc
Confidence 9999988 56666699999999997664322 22222222 233444455899999999755433221
Q ss_pred -------ccCCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeeeecCC
Q 008510 144 -------GTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRKLPYN 215 (563)
Q Consensus 144 -------g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n 215 (563)
.++++...++.+. ++.+++|+...+.. ...+.++. +.+..+.+ +++..+.....|
T Consensus 178 ~~i~~~~~~~~~~~l~~~~~-~~~i~i~d~~~~~~---------------~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~ 240 (289)
T cd00200 178 GEVNSVAFSPDGEKLLSSSS-DGTIKLWDLSTGKC---------------LGTLRGHE-NGVNSVAFSPDGYLLASGSED 240 (289)
T ss_pred cccceEEECCCcCEEEEecC-CCcEEEEECCCCce---------------ecchhhcC-CceEEEEEcCCCcEEEEEcCC
Confidence 3344434444433 35556777644211 11122333 46888888 677777777778
Q ss_pred CCCChhHHH
Q 008510 216 RSDNPYDAA 224 (563)
Q Consensus 216 ~~~~~w~~a 224 (563)
+.+.+|+..
T Consensus 241 ~~i~i~~~~ 249 (289)
T cd00200 241 GTIRVWDLR 249 (289)
T ss_pred CcEEEEEcC
Confidence 999999875
No 83
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.59 E-value=1.8e-14 Score=138.71 Aligned_cols=202 Identities=17% Similarity=0.225 Sum_probs=137.6
Q ss_pred EEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCCeEEEEeCCCcEEEEc-CCceeE-----------------
Q 008510 5 GIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWK-DGVCVQ----------------- 65 (563)
Q Consensus 5 ~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g~l~s~s~D~tvriWd-~~~~~~----------------- 65 (563)
.++|||.||.|++||+ +..|+++++.|.+.|..+++.. +.++++|.|++||.|. .+..++
T Consensus 81 ~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~-~~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~~~ 159 (433)
T KOG0268|consen 81 TVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ-TSFFTVGDDKTVKQWKIDGPPLHTILGKSVYLGIDHHRKN 159 (433)
T ss_pred hhhccccCceEEEEehhhhhhhheeecccCceeeEEecc-cceEEecCCcceeeeeccCCcceeeecccccccccccccc
Confidence 5899999999999999 7889999999999999999986 4789999999999997 333222
Q ss_pred ----------------------EEe-cCCcEEEEEEccCCc--EEEEeCCCcEEEEEcCCCceeceeeeccccccc----
Q 008510 66 ----------------------SIE-HPGCVWDAKFLENGD--IVTACSDGVTRIWTVHSDKVADSLELEAYASEL---- 116 (563)
Q Consensus 66 ----------------------~l~-h~~~V~~v~~~p~g~--i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v---- 116 (563)
++. ..+.|.++.|+|.-. |++|++|+.|.+||++++.......+..-.+.+
T Consensus 160 ~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnP 239 (433)
T KOG0268|consen 160 SVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNP 239 (433)
T ss_pred ccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccceecCc
Confidence 222 233588899999655 788889999999999998865544443222221
Q ss_pred cee-EEeeccCCceEEEeCCCCc------------eeeecccCCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCC
Q 008510 117 SQY-KLCRKKVGGLKLEDLPGLE------------ALQIPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDD 183 (563)
Q Consensus 117 ~~~-~~~~~~~~~i~~~d~~~~~------------~l~~~g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~ 183 (563)
..+ ..++.+|.++-.+|++..+ ++.+-.++.|+-.+..+-| ..+.++....+
T Consensus 240 eafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyD-ksIRIf~~~~~-------------- 304 (433)
T KOG0268|consen 240 EAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYD-KSIRIFPVNHG-------------- 304 (433)
T ss_pred cccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhcccccc-ceEEEeecCCC--------------
Confidence 223 3356677788888876332 1222233333333222222 11122221111
Q ss_pred CCCceeecCcccCcEEEEEc-CCCCeeeeecCCCCCChhHH
Q 008510 184 GMNRPILDGIQYDYVFDVDI-GDGEPTRKLPYNRSDNPYDA 223 (563)
Q Consensus 184 ~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~~~~~w~~ 223 (563)
...-+|--+....||+|.+ .|.+.+.+++.|++++.|.+
T Consensus 305 -~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka 344 (433)
T KOG0268|consen 305 -HSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKA 344 (433)
T ss_pred -cchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeec
Confidence 1223344455577999999 89999999999999999987
No 84
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.57 E-value=7.3e-14 Score=145.52 Aligned_cols=204 Identities=16% Similarity=0.240 Sum_probs=151.8
Q ss_pred CEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc-----C--Cce--------eEE
Q 008510 4 VGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-----D--GVC--------VQS 66 (563)
Q Consensus 4 ~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd-----~--~~~--------~~~ 66 (563)
+++++|...|.+-++|+ +...+.+...|.+.|++++.+||+ .+++||.|.+|++|| + +.. .++
T Consensus 425 ~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rt 504 (888)
T KOG0306|consen 425 RYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRT 504 (888)
T ss_pred ceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceE
Confidence 56677777777777777 666666778999999999999999 899999999999999 2 211 134
Q ss_pred EecCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccccc--------eeEEeeccCCceEEEeCCCC
Q 008510 67 IEHPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELS--------QYKLCRKKVGGLKLEDLPGL 137 (563)
Q Consensus 67 l~h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~--------~~~~~~~~~~~i~~~d~~~~ 137 (563)
+..+..|.|++++|||+ ++.+-.|++|+||-+++-+.. ..+.+|.-+|. ...++++.|.++++|-+.-+
T Consensus 505 Lel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFf--lsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFG 582 (888)
T KOG0306|consen 505 LELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFF--LSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFG 582 (888)
T ss_pred EeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeee--eeecccccceeEEeccCCcCeEEeccCCCceEEeccccc
Confidence 45677899999999999 889999999999999987632 24444444433 45567888999999999766
Q ss_pred ceeeec-ccCCCeE---------EEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCC
Q 008510 138 EALQIP-GTNAGQT---------KVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDG 206 (563)
Q Consensus 138 ~~l~~~-g~~dg~~---------~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg 206 (563)
..-... +|.|... .++.++.+..+.+||.... + ..+.+.||. .-|++..+ ++|
T Consensus 583 DCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kF--e-------------~iq~L~~H~-~ev~cLav~~~G 646 (888)
T KOG0306|consen 583 DCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKF--E-------------EIQKLDGHH-SEVWCLAVSPNG 646 (888)
T ss_pred hhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhh--h-------------hheeeccch-heeeeeEEcCCC
Confidence 554443 4445432 3444455566677775332 1 234477777 55899888 999
Q ss_pred CeeeeecCCCCCChhHHHH
Q 008510 207 EPTRKLPYNRSDNPYDAAD 225 (563)
Q Consensus 207 ~~~~~~~~n~~~~~w~~a~ 225 (563)
..+.+.+.|.+++.|.--+
T Consensus 647 ~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 647 SFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred CeEEeccCCceeEeeeccC
Confidence 9999999999999998654
No 85
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.56 E-value=3.1e-15 Score=146.08 Aligned_cols=213 Identities=14% Similarity=0.191 Sum_probs=154.1
Q ss_pred CEEEEEECCCcEEEEcC-CC--ceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEEE
Q 008510 4 VGIISASHDCTIRLWAL-TG--QVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDA 76 (563)
Q Consensus 4 ~~l~s~s~DgtIrlWd~-~g--~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~v 76 (563)
+.|++|+.|..|++|++ .+ +.+.++.|..+.|.+++|.+++ .+++++.|+++++|+ +.+...++. |++.|.++
T Consensus 188 dtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~a 267 (459)
T KOG0288|consen 188 DTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAA 267 (459)
T ss_pred chhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeee
Confidence 68999999999999999 33 3788999999999999999999 899999999999999 778888998 99999999
Q ss_pred EEccCCc-EEEEeCCCcEEEEEcCCCceeceeeeccccccc---ceeEEeeccCCceEEEeCCCCceeeec---------
Q 008510 77 KFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASEL---SQYKLCRKKVGGLKLEDLPGLEALQIP--------- 143 (563)
Q Consensus 77 ~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v---~~~~~~~~~~~~i~~~d~~~~~~l~~~--------- 143 (563)
.|..... +++|+.|.+|+.||+....+..........+.+ ....+++..+++|++||.++.......
T Consensus 268 k~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl 347 (459)
T KOG0288|consen 268 KFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSL 347 (459)
T ss_pred hhhccccceeeccccchhhhhhhhhhheeccccccccccceEecceeeeecccccceEEEeccCCceeeEeecCcceeeE
Confidence 9987655 999999999999999998765443322222222 245567888999999998766544332
Q ss_pred -ccCCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeeeecCCCCCChh
Q 008510 144 -GTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRKLPYNRSDNPY 221 (563)
Q Consensus 144 -g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~~~~~w 221 (563)
-+.+|.-.+.++.++.+ -..|..+..-. . ... ......|+ | +..+-| |+|.+++.++.|+.+.+|
T Consensus 348 ~ls~~g~~lLsssRDdtl-~viDlRt~eI~--~-~~s------A~g~k~as--D-wtrvvfSpd~~YvaAGS~dgsv~iW 414 (459)
T KOG0288|consen 348 DLSMDGLELLSSSRDDTL-KVIDLRTKEIR--Q-TFS------AEGFKCAS--D-WTRVVFSPDGSYVAAGSADGSVYIW 414 (459)
T ss_pred eeccCCeEEeeecCCCce-eeeecccccEE--E-Eee------cccccccc--c-cceeEECCCCceeeeccCCCcEEEE
Confidence 23444444444444332 23343322111 0 111 11123333 3 456667 999999999999999999
Q ss_pred HHHHHHHH
Q 008510 222 DAADKWLL 229 (563)
Q Consensus 222 ~~a~~f~~ 229 (563)
++....|+
T Consensus 415 ~v~tgKlE 422 (459)
T KOG0288|consen 415 SVFTGKLE 422 (459)
T ss_pred EccCceEE
Confidence 99755443
No 86
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.56 E-value=1.2e-13 Score=135.87 Aligned_cols=154 Identities=25% Similarity=0.397 Sum_probs=118.4
Q ss_pred CCCEEEEEECCCcEEEEcC-CCceeEEEecC--CCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEE
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGH--TAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVW 74 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH--~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~ 74 (563)
.|+||+++|+|++.-..|. +|.++...... .-.+.+..|+||| .|++|..|+.|+||| ++..+..|. |.+.|.
T Consensus 314 tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk 393 (506)
T KOG0289|consen 314 TGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVK 393 (506)
T ss_pred CCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCcee
Confidence 5899999999999999999 88877655432 2347899999999 999999999999999 566666677 999999
Q ss_pred EEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccccceeEEeeccCCceEEEeCCCCceeeecccCCCeEEEE
Q 008510 75 DAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLCRKKVGGLKLEDLPGLEALQIPGTNAGQTKVV 153 (563)
Q Consensus 75 ~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~d~~~~~~l~~~g~~dg~~~l~ 153 (563)
.++|+.||. +++++.|+.|++||+|..+......+..+. ++.....-..|.+...
T Consensus 394 ~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~------------------------~v~s~~fD~SGt~L~~ 449 (506)
T KOG0289|consen 394 AISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKK------------------------EVNSLSFDQSGTYLGI 449 (506)
T ss_pred EEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccc------------------------cceeEEEcCCCCeEEe
Confidence 999999999 999999999999999987733333332211 1112223345666666
Q ss_pred ecCCCeEEEEEecccceEEEeCcEeeC
Q 008510 154 REGDNGVAYSWDMKEQKWDKLGEVVDG 180 (563)
Q Consensus 154 ~~~~~~~~~~wd~~~~~w~~~g~v~~~ 180 (563)
. +.+..+|++...+..|..+.....+
T Consensus 450 ~-g~~l~Vy~~~k~~k~W~~~~~~~~~ 475 (506)
T KOG0289|consen 450 A-GSDLQVYICKKKTKSWTEIKELADH 475 (506)
T ss_pred e-cceeEEEEEecccccceeeehhhhc
Confidence 6 4457789999999999988655554
No 87
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.56 E-value=5.6e-15 Score=153.18 Aligned_cols=157 Identities=20% Similarity=0.349 Sum_probs=124.7
Q ss_pred CCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEEEE
Q 008510 3 GVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDAK 77 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~v~ 77 (563)
...++.|++||+||+||+ .++.++++.||...+.+|.|+|-+ ++++|+.|...++|| ...|.+++. |+..|.++.
T Consensus 82 E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~ 161 (825)
T KOG0267|consen 82 ERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLR 161 (825)
T ss_pred hhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEe
Confidence 356889999999999999 899999999999999999999999 889999999999999 578999998 999999999
Q ss_pred EccCCc-EEEEeCCCcEEEEEcCCCceeceee-----ecccccccce-eEEeeccCCceEEEeCCCCceeeec-ccCCCe
Q 008510 78 FLENGD-IVTACSDGVTRIWTVHSDKVADSLE-----LEAYASELSQ-YKLCRKKVGGLKLEDLPGLEALQIP-GTNAGQ 149 (563)
Q Consensus 78 ~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~-----~~~~~~~v~~-~~~~~~~~~~i~~~d~~~~~~l~~~-g~~dg~ 149 (563)
|+|+|+ +++|+.|.+++|||...|+....+. ....+.+... ....++.++.+++||+.+.+++... ...+|.
T Consensus 162 lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v 241 (825)
T KOG0267|consen 162 LSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGV 241 (825)
T ss_pred ecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCc
Confidence 999999 8999999999999999888553322 1111122222 3335778899999999987776554 334555
Q ss_pred EEEEecCCCe
Q 008510 150 TKVVREGDNG 159 (563)
Q Consensus 150 ~~l~~~~~~~ 159 (563)
....+..++.
T Consensus 242 ~~~~fn~~~~ 251 (825)
T KOG0267|consen 242 RSLAFNPDGK 251 (825)
T ss_pred eeeeecCCce
Confidence 5555554433
No 88
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.55 E-value=5.3e-14 Score=133.09 Aligned_cols=153 Identities=21% Similarity=0.387 Sum_probs=120.9
Q ss_pred CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc---CCceeEEEe-cCCcEEE
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK---DGVCVQSIE-HPGCVWD 75 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd---~~~~~~~l~-h~~~V~~ 75 (563)
.|+.++++|+|.|..+||+ +|+++..+.||......++-+|.. .++++|.|.+.|+|| .-..+..|+ |+..|.+
T Consensus 283 gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS 362 (481)
T KOG0300|consen 283 GGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTS 362 (481)
T ss_pred CcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeE
Confidence 3678999999999999999 899999999999999999999988 899999999999999 334556677 9999999
Q ss_pred EEEccCCcEEEEeCCCcEEEEEcCCCceeceeeecccc--c----ccce-eEEeeccCCceEEEeCCCCceeeec-ccCC
Q 008510 76 AKFLENGDIVTACSDGVTRIWTVHSDKVADSLELEAYA--S----ELSQ-YKLCRKKVGGLKLEDLPGLEALQIP-GTNA 147 (563)
Q Consensus 76 v~~~p~g~i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~--~----~v~~-~~~~~~~~~~i~~~d~~~~~~l~~~-g~~d 147 (563)
+.|..+.++++|+.|.+|+|||++..+- +...+..-. + .... .+.....+..++++|+.+...-..+ .+..
T Consensus 363 ~vF~~dd~vVSgSDDrTvKvWdLrNMRs-plATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRq 441 (481)
T KOG0300|consen 363 VVFNTDDRVVSGSDDRTVKVWDLRNMRS-PLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQ 441 (481)
T ss_pred EEEecCCceeecCCCceEEEeeeccccC-cceeeecCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCccccc
Confidence 9999988899999999999999998762 222222111 1 1112 2333455679999999998887776 5666
Q ss_pred CeEEEEec
Q 008510 148 GQTKVVRE 155 (563)
Q Consensus 148 g~~~l~~~ 155 (563)
|..+|+.+
T Consensus 442 gHrRMV~c 449 (481)
T KOG0300|consen 442 GHRRMVTC 449 (481)
T ss_pred ccceeeee
Confidence 77776543
No 89
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=1.3e-13 Score=142.30 Aligned_cols=205 Identities=17% Similarity=0.212 Sum_probs=151.1
Q ss_pred CCCEEEEEECCCcEEEEcC-CCceeEEEec-CCCcEEEEEEcCCCeEEEEeCCCcEEEEc--CC-ceeEEEe-cCCcEEE
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVLMEMVG-HTAIVYSIDSHASGLIVSGSEDRFAKIWK--DG-VCVQSIE-HPGCVWD 75 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~g-H~~~V~~v~~~p~g~l~s~s~D~tvriWd--~~-~~~~~l~-h~~~V~~ 75 (563)
+|++|+.|-.+|+|.|||. +.+.+.++.+ |...|-+++|... .+.+|+.|+.|.++| .. ....++. |...|..
T Consensus 228 ~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~~-~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCg 306 (484)
T KOG0305|consen 228 DGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNSS-VLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCG 306 (484)
T ss_pred CCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEeccCc-eEEEecCCCcEEEEEEecchhhhhhhhcccceeee
Confidence 5899999999999999999 7888899999 9999999999833 899999999999999 33 3334465 8889999
Q ss_pred EEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccccceeEEe-----------eccCCceEEEeCCCCceeeec
Q 008510 76 AKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLC-----------RKKVGGLKLEDLPGLEALQIP 143 (563)
Q Consensus 76 v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~~~~~~-----------~~~~~~i~~~d~~~~~~l~~~ 143 (563)
++|++++. +|+|+.|+.+.|||..... +...+..|...|..+.++ +..|++|++|+..++..+...
T Consensus 307 Lkws~d~~~lASGgnDN~~~Iwd~~~~~--p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~v 384 (484)
T KOG0305|consen 307 LKWSPDGNQLASGGNDNVVFIWDGLSPE--PKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSV 384 (484)
T ss_pred eEECCCCCeeccCCCccceEeccCCCcc--ccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccc
Confidence 99999999 9999999999999995544 333455555555544332 345789999999877666554
Q ss_pred ccCCCeEEEEecCCC-----------eEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeee
Q 008510 144 GTNAGQTKVVREGDN-----------GVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRK 211 (563)
Q Consensus 144 g~~dg~~~l~~~~~~-----------~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~ 211 (563)
.+.....-+.+.... ..+.+|+..+. .....+.||. ..|....+ |||..+.+
T Consensus 385 dtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~---------------~~~~~l~gH~-~RVl~la~SPdg~~i~t 448 (484)
T KOG0305|consen 385 DTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSM---------------KLVAELLGHT-SRVLYLALSPDGETIVT 448 (484)
T ss_pred ccCCceeeEEEcCCCCEEEEecCCCCCcEEEEecccc---------------ceeeeecCCc-ceeEEEEECCCCCEEEE
Confidence 332333333333222 12233332221 1233467787 56888888 99999999
Q ss_pred ecCCCCCChhHHHH
Q 008510 212 LPYNRSDNPYDAAD 225 (563)
Q Consensus 212 ~~~n~~~~~w~~a~ 225 (563)
+.-|.+.+.|++-.
T Consensus 449 ~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 449 GAADETLRFWNLFD 462 (484)
T ss_pred ecccCcEEeccccC
Confidence 99999999999843
No 90
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.55 E-value=1.7e-13 Score=129.82 Aligned_cols=78 Identities=18% Similarity=0.323 Sum_probs=69.9
Q ss_pred CCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEecCCcEEEEEE
Q 008510 3 GVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIEHPGCVWDAKF 78 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~h~~~V~~v~~ 78 (563)
|.++|+|..||.|-+||+ +...-+++.+|..+|.|++|+++| .++|+|.|-.|++|| .|.+++.+..+..||.+.|
T Consensus 35 G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~spv~~~q~ 114 (405)
T KOG1273|consen 35 GDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVWGAQW 114 (405)
T ss_pred cceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEccCccceeee
Confidence 789999999999999999 777888899999999999999999 999999999999999 8888888876666666665
Q ss_pred cc
Q 008510 79 LE 80 (563)
Q Consensus 79 ~p 80 (563)
+|
T Consensus 115 hp 116 (405)
T KOG1273|consen 115 HP 116 (405)
T ss_pred cc
Confidence 55
No 91
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.55 E-value=7.4e-14 Score=138.36 Aligned_cols=220 Identities=17% Similarity=0.251 Sum_probs=158.0
Q ss_pred CCCEEEEEECCCcEEEEcC-CCcee----EE------------E--ecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVL----ME------------M--VGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-- 59 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i----~~------------l--~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd-- 59 (563)
++.+.+++|.||+|--|++ +|+-. .+ . ++|...+.++++++|| ++++|+.|+.|.||+
T Consensus 153 d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~ 232 (479)
T KOG0299|consen 153 DDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCD 232 (479)
T ss_pred cccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEecCCCceEEEecCc
Confidence 4678999999999999998 66422 11 1 3788999999999999 999999999999999
Q ss_pred CCceeEEEe-cCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccccc--------eeEEeeccCCce
Q 008510 60 DGVCVQSIE-HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELS--------QYKLCRKKVGGL 129 (563)
Q Consensus 60 ~~~~~~~l~-h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~--------~~~~~~~~~~~i 129 (563)
+.+.++.+. |.+.|.+++|-..-. +.++|.|+.|++|++.... ..+.+.+|++.+. ...-.+..|+++
T Consensus 233 t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s--~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~ 310 (479)
T KOG0299|consen 233 TLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLS--YVETLYGHQDGVLGIDALSRERCVTVGGRDRTV 310 (479)
T ss_pred ccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhH--HHHHHhCCccceeeechhcccceEEecccccee
Confidence 888899988 999999999986544 9999999999999998754 2334555555443 222345589999
Q ss_pred EEEeCCCCceeeecccC---CC-----eEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEE
Q 008510 130 KLEDLPGLEALQIPGTN---AG-----QTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDV 201 (563)
Q Consensus 130 ~~~d~~~~~~l~~~g~~---dg-----~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~v 201 (563)
++|+++....+...++. |. ...++.+++++.++.|+.....-..+..+ +.+....-....+. -+|.++
T Consensus 311 rlwKi~eesqlifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkplf~~~~--AHgv~~~~~~~~~~--~Witsl 386 (479)
T KOG0299|consen 311 RLWKIPEESQLIFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSLLKKKPLFTSRL--AHGVIPELDPVNGN--FWITSL 386 (479)
T ss_pred EEEeccccceeeeeCCCCCeeeEEEecccceeeccCCceEEEeeecccCceeEeec--cccccCCccccccc--cceeee
Confidence 99999876655544432 21 12455666778899999765542222111 11100000001111 378888
Q ss_pred Ec-CCCCeeeeecCCCCCChhHHHHHH
Q 008510 202 DI-GDGEPTRKLPYNRSDNPYDAADKW 227 (563)
Q Consensus 202 d~-~dg~~~~~~~~n~~~~~w~~a~~f 227 (563)
.. +.....++++.|+.++.|.+.+.|
T Consensus 387 a~i~~sdL~asGS~~G~vrLW~i~~g~ 413 (479)
T KOG0299|consen 387 AVIPGSDLLASGSWSGCVRLWKIEDGL 413 (479)
T ss_pred EecccCceEEecCCCCceEEEEecCCc
Confidence 88 788889999999999999998764
No 92
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.54 E-value=2.8e-14 Score=142.32 Aligned_cols=214 Identities=14% Similarity=0.186 Sum_probs=144.8
Q ss_pred CCCEEEEEECCCcEEEEcC---CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEE
Q 008510 2 PGVGIISASHDCTIRLWAL---TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVW 74 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~---~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~ 74 (563)
||+.|++||.-.++-|||+ +-+...++....-..|.++.+||. ..++|..||.|+||| +...++.|+ |++.+.
T Consensus 476 dgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGas 555 (705)
T KOG0639|consen 476 DGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGAS 555 (705)
T ss_pred CCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCce
Confidence 6889999999999999999 333444454444567899999998 788999999999999 777788888 999999
Q ss_pred EEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeeccccc----c-cceeEEeeccCCceEEEeCCCCceeeecccCCC
Q 008510 75 DAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYAS----E-LSQYKLCRKKVGGLKLEDLPGLEALQIPGTNAG 148 (563)
Q Consensus 75 ~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~----~-v~~~~~~~~~~~~i~~~d~~~~~~l~~~g~~dg 148 (563)
|+.++++|. |-||+.|++||-||++++++..+..+..-.- . .......+..++.+.+....+.+..+..-|...
T Consensus 556 cIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhlheSc 635 (705)
T KOG0639|consen 556 CIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESC 635 (705)
T ss_pred eEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCccceeecccccE
Confidence 999999998 9999999999999999998553322221110 0 112233444556666666655554444333222
Q ss_pred eEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeeeecCCCCCChhHH
Q 008510 149 QTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRKLPYNRSDNPYDA 223 (563)
Q Consensus 149 ~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~~~~~w~~ 223 (563)
...+-+... -.|=..+|.=+.++..... .+..+|+.++..-|.++|+ .|.+++.+++-|+...+|.+
T Consensus 636 VLSlKFa~c----GkwfvStGkDnlLnawrtP----yGasiFqskE~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 636 VLSLKFAYC----GKWFVSTGKDNLLNAWRTP----YGASIFQSKESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred EEEEEeccc----CceeeecCchhhhhhccCc----cccceeeccccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 222222111 1122222221222211111 1455788888889999999 89999999999987766654
No 93
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.54 E-value=1.2e-13 Score=126.68 Aligned_cols=174 Identities=22% Similarity=0.300 Sum_probs=128.3
Q ss_pred CCEEEEEECCCcEEEEcC-CCc--eeEEEecCCCcEEEEEEcCCC---eEEEEeCCCcEEEEc---C-CceeEEEe--cC
Q 008510 3 GVGIISASHDCTIRLWAL-TGQ--VLMEMVGHTAIVYSIDSHASG---LIVSGSEDRFAKIWK---D-GVCVQSIE--HP 70 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~-~g~--~i~~l~gH~~~V~~v~~~p~g---~l~s~s~D~tvriWd---~-~~~~~~l~--h~ 70 (563)
|.+|||||.||.|.||.- .|+ .......|.+.|++|+|.|.+ .|++++.||+|+|.+ + +-....+. |+
T Consensus 70 G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~ 149 (299)
T KOG1332|consen 70 GTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHE 149 (299)
T ss_pred CcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccc
Confidence 789999999999999998 453 345667899999999999974 799999999999998 3 23333333 88
Q ss_pred CcEEEEEEccC---C-----------c-EEEEeCCCcEEEEEcCCCceeceeeecccccccc------------eeEEee
Q 008510 71 GCVWDAKFLEN---G-----------D-IVTACSDGVTRIWTVHSDKVADSLELEAYASELS------------QYKLCR 123 (563)
Q Consensus 71 ~~V~~v~~~p~---g-----------~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~------------~~~~~~ 123 (563)
-.|.+|+|.|- | + +++|+.|..|+||+..+++......+++|.+-|. ..+.+.
T Consensus 150 ~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~ 229 (299)
T KOG1332|consen 150 IGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASC 229 (299)
T ss_pred cccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEe
Confidence 89999999984 4 3 8999999999999999986554445666665443 445577
Q ss_pred ccCCceEEEeCCCC--------------ceeeecccCCCeEEEEecCCCeEEEEEec-ccceEEEeCcE
Q 008510 124 KKVGGLKLEDLPGL--------------EALQIPGTNAGQTKVVREGDNGVAYSWDM-KEQKWDKLGEV 177 (563)
Q Consensus 124 ~~~~~i~~~d~~~~--------------~~l~~~g~~dg~~~l~~~~~~~~~~~wd~-~~~~w~~~g~v 177 (563)
++||.+-+|..... .+.....+..|.+..+..++ ..+.+|-. ..|+|.+++.+
T Consensus 230 SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~Gd-Nkvtlwke~~~Gkw~~v~~~ 297 (299)
T KOG1332|consen 230 SQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGD-NKVTLWKENVDGKWEEVGEV 297 (299)
T ss_pred cCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCC-cEEEEEEeCCCCcEEEcccc
Confidence 88899999987522 02233355667776666666 34455643 35688877643
No 94
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.53 E-value=1.7e-13 Score=129.75 Aligned_cols=209 Identities=28% Similarity=0.395 Sum_probs=145.6
Q ss_pred EEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc---C-------------------
Q 008510 5 GIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK---D------------------- 60 (563)
Q Consensus 5 ~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd---~------------------- 60 (563)
.+.++|.|-|.+||.+ +|.|+.+|.||.+.|.|++|++.+ .++++|.|++..||. .
T Consensus 162 i~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e 241 (481)
T KOG0300|consen 162 ICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEE 241 (481)
T ss_pred ceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhh
Confidence 5789999999999999 899999999999999999999999 899999999999996 1
Q ss_pred ----------------Cc----eeEEEe-cCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccc---
Q 008510 61 ----------------GV----CVQSIE-HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASE--- 115 (563)
Q Consensus 61 ----------------~~----~~~~l~-h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~--- 115 (563)
+. ++..++ |.+.|.+..|...|+ +++++.|.+-.+||+.++..... +.+|...
T Consensus 242 ~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~--LtGHd~ELtH 319 (481)
T KOG0300|consen 242 HSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNI--LTGHDSELTH 319 (481)
T ss_pred cccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceecc--ccCcchhccc
Confidence 00 122334 788899999999998 99999999999999999985543 3333322
Q ss_pred -----cceeEEeeccCCceEEEeCCCC-ceeee-cccCCCeEEEEecCCCeE-EEEEecccceEEEeCcEeeCCCCCCCc
Q 008510 116 -----LSQYKLCRKKVGGLKLEDLPGL-EALQI-PGTNAGQTKVVREGDNGV-AYSWDMKEQKWDKLGEVVDGPDDGMNR 187 (563)
Q Consensus 116 -----v~~~~~~~~~~~~i~~~d~~~~-~~l~~-~g~~dg~~~l~~~~~~~~-~~~wd~~~~~w~~~g~v~~~~~~~~~~ 187 (563)
.....+..+.|.+.++||++.. ..+.+ .||.|..+.+++.-++.+ .-.-|.+.+.|+....- .. -.
T Consensus 320 cstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~vVSgSDDrTvKvWdLrNMR-sp-----lA 393 (481)
T KOG0300|consen 320 CSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDRVVSGSDDRTVKVWDLRNMR-SP-----LA 393 (481)
T ss_pred cccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCceeecCCCceEEEeeecccc-Cc-----ce
Confidence 3456677888999999999832 11222 288887776655544333 22233333444432110 00 00
Q ss_pred eeecCcccCcEEEEEcCCCCeeeeecCCC-CCChhHHH
Q 008510 188 PILDGIQYDYVFDVDIGDGEPTRKLPYNR-SDNPYDAA 224 (563)
Q Consensus 188 ~~~~g~~~d~v~~vd~~dg~~~~~~~~n~-~~~~w~~a 224 (563)
.+ ....-+..+.+..|.++..+|.|. .+++|+..
T Consensus 394 TI---RtdS~~NRvavs~g~~iIAiPhDNRqvRlfDln 428 (481)
T KOG0300|consen 394 TI---RTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLN 428 (481)
T ss_pred ee---ecCCccceeEeecCCceEEeccCCceEEEEecC
Confidence 00 111235667776777788888665 56777764
No 95
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.53 E-value=1.5e-12 Score=125.87 Aligned_cols=221 Identities=16% Similarity=0.136 Sum_probs=153.3
Q ss_pred CCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEEEE
Q 008510 3 GVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDAK 77 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~v~ 77 (563)
.++++|||.|....+|+. +|+...++.||...|.++.|+.+| +++||+.+|.|+||. ++.....+. .-..+--+.
T Consensus 76 ~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~ 155 (399)
T KOG0296|consen 76 NNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLK 155 (399)
T ss_pred CceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEE
Confidence 468999999999999999 899999999999999999999999 999999999999999 777777775 333666699
Q ss_pred EccCCc-EEEEeCCCcEEEEEcCCCceeceeeeccccccc--------ceeEEeeccCCceEEEeCCCCceeeec-----
Q 008510 78 FLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASEL--------SQYKLCRKKVGGLKLEDLPGLEALQIP----- 143 (563)
Q Consensus 78 ~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v--------~~~~~~~~~~~~i~~~d~~~~~~l~~~----- 143 (563)
|+|.+. ++.|+.||.+-+|.+.++... ..+.++...+ .+.++++-.+|.|++|+..+.+.+...
T Consensus 156 WHp~a~illAG~~DGsvWmw~ip~~~~~--kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~ 233 (399)
T KOG0296|consen 156 WHPRAHILLAGSTDGSVWMWQIPSQALC--KVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEG 233 (399)
T ss_pred ecccccEEEeecCCCcEEEEECCCccee--eEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEeccccc
Confidence 999998 899999999999999885322 2233333222 366777888999999999876554332
Q ss_pred -----------------ccCCCeEEEEecCCCeEEEEEecccceE-----EEeCcEeeCC----------CCCC------
Q 008510 144 -----------------GTNAGQTKVVREGDNGVAYSWDMKEQKW-----DKLGEVVDGP----------DDGM------ 185 (563)
Q Consensus 144 -----------------g~~dg~~~l~~~~~~~~~~~wd~~~~~w-----~~~g~v~~~~----------~~~~------ 185 (563)
|+++|...++....+.++...+.+.-.. ..+..+-..+ +.-.
T Consensus 234 ~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iy 313 (399)
T KOG0296|consen 234 LELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIY 313 (399)
T ss_pred CcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEE
Confidence 4455666666555555544333100000 0000000000 0000
Q ss_pred -----CceeecCcccCcEEEEEcCCCCeeeeecCCCCCChhHHHHH
Q 008510 186 -----NRPILDGIQYDYVFDVDIGDGEPTRKLPYNRSDNPYDAADK 226 (563)
Q Consensus 186 -----~~~~~~g~~~d~v~~vd~~dg~~~~~~~~n~~~~~w~~a~~ 226 (563)
..+..--|+ +-|..+.|.+...+++..-|+.++.|++...
T Consensus 314 D~a~~~~R~~c~he-~~V~~l~w~~t~~l~t~c~~g~v~~wDaRtG 358 (399)
T KOG0296|consen 314 DLAASTLRHICEHE-DGVTKLKWLNTDYLLTACANGKVRQWDARTG 358 (399)
T ss_pred ecccchhheeccCC-CceEEEEEcCcchheeeccCceEEeeecccc
Confidence 111112233 5588888844778999999999999998644
No 96
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.53 E-value=2.4e-13 Score=134.97 Aligned_cols=202 Identities=16% Similarity=0.231 Sum_probs=137.9
Q ss_pred CCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc-----------CCceeEEEe-
Q 008510 3 GVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-----------DGVCVQSIE- 68 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd-----------~~~~~~~l~- 68 (563)
|.+++.|.-.|.|.+|.+ +|.++..+.+|-..|+|+.|+.|| .|+|||.||.|++|. +.+.++.+.
T Consensus 93 G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~ 172 (476)
T KOG0646|consen 93 GYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSD 172 (476)
T ss_pred ceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeecc
Confidence 566666669999999999 999999999999999999999999 999999999999998 234566676
Q ss_pred cCCcEEEEEEccCC---cEEEEeCCCcEEEEEcCCCceeceeeecccccccceeEEeeccCCceEEEeCCCCceeeeccc
Q 008510 69 HPGCVWDAKFLENG---DIVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLCRKKVGGLKLEDLPGLEALQIPGT 145 (563)
Q Consensus 69 h~~~V~~v~~~p~g---~i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~d~~~~~~l~~~g~ 145 (563)
|+-+|.++...+.| +++|+|.|.++|+||+..+.......+. ..+..--+...+.....|+
T Consensus 173 HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp----------------~si~av~lDpae~~~yiGt 236 (476)
T KOG0646|consen 173 HTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFP----------------SSIKAVALDPAERVVYIGT 236 (476)
T ss_pred CcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecC----------------CcceeEEEcccccEEEecC
Confidence 88899999988653 4999999999999999998743222211 1111111222222223344
Q ss_pred CCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCccc-CcEEEEEc-CCCCeeeeecCCCCCChhHH
Q 008510 146 NAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQY-DYVFDVDI-GDGEPTRKLPYNRSDNPYDA 223 (563)
Q Consensus 146 ~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~-d~v~~vd~-~dg~~~~~~~~n~~~~~w~~ 223 (563)
.+|.+.+..- +.|.... ..+. ..+....+.....+.||++ .-|.+..+ -||..++++.-|+.+.+|++
T Consensus 237 ~~G~I~~~~~------~~~~~~~---~~v~-~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi 306 (476)
T KOG0646|consen 237 EEGKIFQNLL------FKLSGQS---AGVN-QKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDI 306 (476)
T ss_pred CcceEEeeeh------hcCCccc---cccc-ccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEec
Confidence 4444332111 1111000 0000 0111112224556788875 36888888 89999999999999999999
Q ss_pred HHHHHHh
Q 008510 224 ADKWLLK 230 (563)
Q Consensus 224 a~~f~~~ 230 (563)
.++-|.|
T Consensus 307 ~S~Q~iR 313 (476)
T KOG0646|consen 307 YSKQCIR 313 (476)
T ss_pred chHHHHH
Confidence 8775443
No 97
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.52 E-value=9.9e-14 Score=127.49 Aligned_cols=141 Identities=17% Similarity=0.236 Sum_probs=115.5
Q ss_pred CCCEEEEEECCCcEEEEcC--CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEecCCcEEEE
Q 008510 2 PGVGIISASHDCTIRLWAL--TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIEHPGCVWDA 76 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~--~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~h~~~V~~v 76 (563)
|.++|++||++.-+|++|+ ..-+..++.||++.|..+-|.... .++|++.|++||+|| ++..++++..+..|.++
T Consensus 111 ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSl 190 (334)
T KOG0278|consen 111 DSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSL 190 (334)
T ss_pred cchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCCCcce
Confidence 4578999999999999999 345678899999999999998765 888999999999999 99999999988899999
Q ss_pred EEccCCcEEEEeCCCcEEEEEcCCCceeceeeecccc-----cccceeEEeeccCCceEEEeCCCCceeee
Q 008510 77 KFLENGDIVTACSDGVTRIWTVHSDKVADSLELEAYA-----SELSQYKLCRKKVGGLKLEDLPGLEALQI 142 (563)
Q Consensus 77 ~~~p~g~i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~i~~~d~~~~~~l~~ 142 (563)
.++++|+|++-...+.|.+||..+-.......+..-. ..-....+++..+..+..+|+.+++.+..
T Consensus 191 Evs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~ 261 (334)
T KOG0278|consen 191 EVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGS 261 (334)
T ss_pred eeccCCCEEEEecCceeEEeccccccceeeccCccccccccccCCCceEEecCcceEEEEEeccCCceeee
Confidence 9999999999999999999999887644333222111 11225677888999999999987765544
No 98
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.50 E-value=9.7e-13 Score=130.02 Aligned_cols=164 Identities=18% Similarity=0.209 Sum_probs=124.2
Q ss_pred CEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC--eEEEEeCCCcEEEEc-C--CceeEEEecCCcEEEEE
Q 008510 4 VGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK-D--GVCVQSIEHPGCVWDAK 77 (563)
Q Consensus 4 ~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g--~l~s~s~D~tvriWd-~--~~~~~~l~h~~~V~~v~ 77 (563)
+.|||||.|.||++||+ +|+|..++.-|...|.++.|+|.. .+++||.|++|++.| . ...-..++..+.|-.++
T Consensus 257 nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~ 336 (463)
T KOG0270|consen 257 NVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVA 336 (463)
T ss_pred eeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEE
Confidence 57999999999999999 999999999999999999999975 899999999999999 2 23334455678899999
Q ss_pred EccCCc--EEEEeCCCcEEEEEcCCCceeceeeecccccccceeEE---------eeccCCceEEEeCCCCceeeec---
Q 008510 78 FLENGD--IVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKL---------CRKKVGGLKLEDLPGLEALQIP--- 143 (563)
Q Consensus 78 ~~p~g~--i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~~~~~---------~~~~~~~i~~~d~~~~~~l~~~--- 143 (563)
|.|... ++++..||+||-+|.|... -+...+++|...+.+..+ +++.++.+++|++...+.-...
T Consensus 337 w~~~se~~f~~~tddG~v~~~D~R~~~-~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~ 415 (463)
T KOG0270|consen 337 WDPHSENSFFVSTDDGTVYYFDIRNPG-KPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHS 415 (463)
T ss_pred ecCCCceeEEEecCCceEEeeecCCCC-CceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCccccccc
Confidence 999876 8899999999999999875 355677777777665443 4567789999998754331111
Q ss_pred ----------ccCCCeEEEEecCCCeEEEEEeccc
Q 008510 144 ----------GTNAGQTKVVREGDNGVAYSWDMKE 168 (563)
Q Consensus 144 ----------g~~dg~~~l~~~~~~~~~~~wd~~~ 168 (563)
..++-...+..++.+.+..+||..+
T Consensus 416 ~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~ 450 (463)
T KOG0270|consen 416 FKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFT 450 (463)
T ss_pred ccccceeecccCCCcceEEEecCccceEEEeeccc
Confidence 2223334445555555666666543
No 99
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.48 E-value=5.4e-13 Score=126.08 Aligned_cols=202 Identities=19% Similarity=0.279 Sum_probs=137.9
Q ss_pred CCEEEEEECCCcEEEEcCCC---c-eeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe----cCC
Q 008510 3 GVGIISASHDCTIRLWALTG---Q-VLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE----HPG 71 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~~g---~-~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~----h~~ 71 (563)
...|+|||.|++||++|... + -.+.+ .....|.+++|+|.| .++.|.+..++|+|| +.+|.-.-. |++
T Consensus 184 e~ILiS~srD~tvKlFDfsK~saKrA~K~~-qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ 262 (430)
T KOG0640|consen 184 ETILISGSRDNTVKLFDFSKTSAKRAFKVF-QDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTG 262 (430)
T ss_pred hheEEeccCCCeEEEEecccHHHHHHHHHh-hccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCccccccc
Confidence 36799999999999999932 1 22222 345789999999999 788888888999999 777765432 889
Q ss_pred cEEEEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccc---------cccceeEEeeccCCceEEEeCCCCceee
Q 008510 72 CVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYA---------SELSQYKLCRKKVGGLKLEDLPGLEALQ 141 (563)
Q Consensus 72 ~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~---------~~v~~~~~~~~~~~~i~~~d~~~~~~l~ 141 (563)
.|.+|.++++|. -++|+.||.|++||--++|+..... .+|. ..-..+.++.+.|..+++|.+.++..+.
T Consensus 263 ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~-~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~ 341 (430)
T KOG0640|consen 263 AITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIG-NAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLK 341 (430)
T ss_pred ceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHH-hhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEE
Confidence 999999999999 6999999999999998888654321 1111 1234667788889999999999887776
Q ss_pred ec-cc--C---CC----------eEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCcee-ecCcccCcEEEEEc-
Q 008510 142 IP-GT--N---AG----------QTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPI-LDGIQYDYVFDVDI- 203 (563)
Q Consensus 142 ~~-g~--~---dg----------~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~-~~g~~~d~v~~vd~- 203 (563)
.. |- . +- .+.++-.......+.||..+.. ++.+ --||. +-+..+..
T Consensus 342 ~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtad---------------r~~l~slgHn-~a~R~i~HS 405 (430)
T KOG0640|consen 342 EYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTAD---------------RVALLSLGHN-GAVRWIVHS 405 (430)
T ss_pred EEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchh---------------hhhhcccCCC-CCceEEEeC
Confidence 54 21 1 11 1222222222345677765431 1111 22343 44544444
Q ss_pred CCCCeeeeecCCCCCChhH
Q 008510 204 GDGEPTRKLPYNRSDNPYD 222 (563)
Q Consensus 204 ~dg~~~~~~~~n~~~~~w~ 222 (563)
|.+-..++.+.|...+-|-
T Consensus 406 P~~p~FmTcsdD~raRFWy 424 (430)
T KOG0640|consen 406 PVEPAFMTCSDDFRARFWY 424 (430)
T ss_pred CCCCceeeecccceeeeee
Confidence 6666678888888877774
No 100
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.48 E-value=9.4e-13 Score=143.01 Aligned_cols=177 Identities=19% Similarity=0.292 Sum_probs=131.7
Q ss_pred CCCEEEEEE--CCCcEEEEcCC-------------CceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc-CC---
Q 008510 2 PGVGIISAS--HDCTIRLWALT-------------GQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-DG--- 61 (563)
Q Consensus 2 ~g~~l~s~s--~DgtIrlWd~~-------------g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd-~~--- 61 (563)
||..|+||| .||.+++|+.+ .+.+.++..|.+.|.||.|+||| +||+||+|+.|.||. ..
T Consensus 24 dg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~ 103 (942)
T KOG0973|consen 24 DGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGS 103 (942)
T ss_pred CceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCC
Confidence 578999999 89999999862 13456778999999999999999 999999999999999 41
Q ss_pred ----------------ceeEEEe-cCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccccc------
Q 008510 62 ----------------VCVQSIE-HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELS------ 117 (563)
Q Consensus 62 ----------------~~~~~l~-h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~------ 117 (563)
++...+. |+..|..|+|+|++. +++++.|++|-+|+.++... ...+.+|...|.
T Consensus 104 ~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~--~~vl~~H~s~VKGvs~DP 181 (942)
T KOG0973|consen 104 GTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFEL--LKVLRGHQSLVKGVSWDP 181 (942)
T ss_pred cccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEcccccee--eeeeecccccccceEECC
Confidence 1445555 999999999999998 89999999999999999853 345556655443
Q ss_pred --eeEEeeccCCceEEEeCCCCc-----------------eeeecccCCCeEEEEecC---CCeEEEEEecccceEEEeC
Q 008510 118 --QYKLCRKKVGGLKLEDLPGLE-----------------ALQIPGTNAGQTKVVREG---DNGVAYSWDMKEQKWDKLG 175 (563)
Q Consensus 118 --~~~~~~~~~~~i~~~d~~~~~-----------------~l~~~g~~dg~~~l~~~~---~~~~~~~wd~~~~~w~~~g 175 (563)
++..+...|+.|++|....-. .+....++||++.+..+. .+..+.+.+. +.|.---
T Consensus 182 ~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR--~tWk~~~ 259 (942)
T KOG0973|consen 182 IGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIER--GTWKVDK 259 (942)
T ss_pred ccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEec--CCceeee
Confidence 555567788999999964311 122337888888776553 1223444443 6676555
Q ss_pred cEeeCCC
Q 008510 176 EVVDGPD 182 (563)
Q Consensus 176 ~v~~~~~ 182 (563)
.++++.+
T Consensus 260 ~LvGH~~ 266 (942)
T KOG0973|consen 260 DLVGHSA 266 (942)
T ss_pred eeecCCC
Confidence 5666544
No 101
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.48 E-value=5.4e-13 Score=136.93 Aligned_cols=211 Identities=18% Similarity=0.214 Sum_probs=140.7
Q ss_pred CEEEEEECCCcEEEEcC-CCceeEE--EecCCCcEEEEEEcCCC--eEEEEeCCCcEEEEc---CCc-------------
Q 008510 4 VGIISASHDCTIRLWAL-TGQVLME--MVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK---DGV------------- 62 (563)
Q Consensus 4 ~~l~s~s~DgtIrlWd~-~g~~i~~--l~gH~~~V~~v~~~p~g--~l~s~s~D~tvriWd---~~~------------- 62 (563)
..|++++.|.|+|.||+ .++++.. +.||++.|.++||+|.. .|++||.||.+.||| ++.
T Consensus 113 ~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~ 192 (720)
T KOG0321|consen 113 SLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGR 192 (720)
T ss_pred eeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhcc
Confidence 46999999999999999 7778777 89999999999999976 899999999999999 220
Q ss_pred ------eeEEE-------e-cCCc----EEEEEEccCCcEEEEeC-CCcEEEEEcCCCceece-eeec-----cc-----
Q 008510 63 ------CVQSI-------E-HPGC----VWDAKFLENGDIVTACS-DGVTRIWTVHSDKVADS-LELE-----AY----- 112 (563)
Q Consensus 63 ------~~~~l-------~-h~~~----V~~v~~~p~g~i~sgs~-Dg~Irvwd~~~~~~~~~-~~~~-----~~----- 112 (563)
..+.. . +... |+.+.|-.+..||++|. |+.|+|||++....+.. +... .+
T Consensus 193 ~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~ 272 (720)
T KOG0321|consen 193 HNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSV 272 (720)
T ss_pred ccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCccccee
Confidence 00000 0 2222 44454444444888877 99999999997653321 1111 11
Q ss_pred ------ccccceeEEeeccCCceEEEeCCCCceee---------------ecccCCCeEEEEecCCCeEEEEEecccceE
Q 008510 113 ------ASELSQYKLCRKKVGGLKLEDLPGLEALQ---------------IPGTNAGQTKVVREGDNGVAYSWDMKEQKW 171 (563)
Q Consensus 113 ------~~~v~~~~~~~~~~~~i~~~d~~~~~~l~---------------~~g~~dg~~~l~~~~~~~~~~~wd~~~~~w 171 (563)
.+....+.++...|+.|.+|++++...-- ..-++|+...+..+.+ ..+|+|....- |
T Consensus 273 G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd-~~ayiw~vs~~-e 350 (720)
T KOG0321|consen 273 GQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSD-EQAYIWVVSSP-E 350 (720)
T ss_pred eeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCC-cceeeeeecCc-c
Confidence 01122455666779999999998653211 1144566666655554 55677765321 1
Q ss_pred EEeCcEeeCCCCCCCceeecCcccCcEEEEEc--CCCCeeeeecCCCCCChhHHHHHHHHhc
Q 008510 172 DKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI--GDGEPTRKLPYNRSDNPYDAADKWLLKE 231 (563)
Q Consensus 172 ~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~--~dg~~~~~~~~n~~~~~w~~a~~f~~~~ 231 (563)
. ....+.||. -.|+.|++ .+-.++++.+-|.+..+|.+ ...+++.
T Consensus 351 ~-------------~~~~l~Ght-~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l-~~~l~e~ 397 (720)
T KOG0321|consen 351 A-------------PPALLLGHT-REVTTVRWLPSATTPVATCSDDFRVKIWRL-SNGLEEI 397 (720)
T ss_pred C-------------ChhhhhCcc-eEEEEEeeccccCCCceeeccCcceEEEec-cCchhhc
Confidence 1 233466765 56899998 34456888899999999998 3334443
No 102
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.47 E-value=2.3e-13 Score=142.37 Aligned_cols=166 Identities=17% Similarity=0.312 Sum_probs=122.7
Q ss_pred CCCCEEEEEECCCcEEEEcCC----CceeEEEecCCCcEEEEEEcCCC--eEEEEeCCCcEEEEc--CCceeEEEe-cCC
Q 008510 1 MPGVGIISASHDCTIRLWALT----GQVLMEMVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK--DGVCVQSIE-HPG 71 (563)
Q Consensus 1 ~~g~~l~s~s~DgtIrlWd~~----g~~i~~l~gH~~~V~~v~~~p~g--~l~s~s~D~tvriWd--~~~~~~~l~-h~~ 71 (563)
++.++||||+..|.|-+||+. .+.+..|..|+..+.+++|++.. +++|||.||+||+|| ..+...++. ...
T Consensus 98 ~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSE 177 (839)
T KOG0269|consen 98 LYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSE 177 (839)
T ss_pred chhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccch
Confidence 356789999999999999993 34566788999999999999865 899999999999999 666667776 555
Q ss_pred cEEEEEEccC-Cc-EEEEeCCCcEEEEEcCCCceeceeeecccccccc--------eeEEeeccCCceEEEeCCCCcee-
Q 008510 72 CVWDAKFLEN-GD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELS--------QYKLCRKKVGGLKLEDLPGLEAL- 140 (563)
Q Consensus 72 ~V~~v~~~p~-g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~--------~~~~~~~~~~~i~~~d~~~~~~l- 140 (563)
.|+.|.|+|. +. ++++...|.++.||+|..+.. ...+.+|.+.|. ....+++.|+.|++||+.+...-
T Consensus 178 SiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~-~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~ 256 (839)
T KOG0269|consen 178 SIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRC-EKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKP 256 (839)
T ss_pred hhhceeeccCCCceEEEecCCceEEEeeccCchhH-HHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccc
Confidence 9999999994 44 999999999999999987622 223344444432 44567889999999999754321
Q ss_pred -----------eecccCCCeEEEEecC--CCeEEEEEecc
Q 008510 141 -----------QIPGTNAGQTKVVREG--DNGVAYSWDMK 167 (563)
Q Consensus 141 -----------~~~g~~dg~~~l~~~~--~~~~~~~wd~~ 167 (563)
.+.+.++.+..+..+. ++..+++||.+
T Consensus 257 ~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvr 296 (839)
T KOG0269|consen 257 KHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVR 296 (839)
T ss_pred eeEEeecceeeeeeeccCccchhhhhhccccceEEEEeec
Confidence 1113445444444433 34557888864
No 103
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.47 E-value=9.5e-13 Score=130.58 Aligned_cols=139 Identities=19% Similarity=0.268 Sum_probs=112.5
Q ss_pred CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEEE
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDA 76 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~v 76 (563)
||++|++|+.|..|.||+. +++.++.+.||.+.|.+++|-... .+.++|.|++|++|+ ....+.++. |++.|..+
T Consensus 213 Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~I 292 (479)
T KOG0299|consen 213 DGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGI 292 (479)
T ss_pred CCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeee
Confidence 6899999999999999999 899999999999999999997655 899999999999999 555666666 99999999
Q ss_pred EEccCCcE-EEEeCCCcEEEEEcCCCceeceeeecccccccce-------eEEeeccCCceEEEeCCCCceeeec
Q 008510 77 KFLENGDI-VTACSDGVTRIWTVHSDKVADSLELEAYASELSQ-------YKLCRKKVGGLKLEDLPGLEALQIP 143 (563)
Q Consensus 77 ~~~p~g~i-~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~~-------~~~~~~~~~~i~~~d~~~~~~l~~~ 143 (563)
..+..++. -+|+.|+++|+|++....+ ....+....+.+ ..++++.+|.|.+|++-....+...
T Consensus 293 daL~reR~vtVGgrDrT~rlwKi~eesq---lifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkplf~~ 364 (479)
T KOG0299|consen 293 DALSRERCVTVGGRDRTVRLWKIPEESQ---LIFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSLLKKKPLFTS 364 (479)
T ss_pred chhcccceEEeccccceeEEEeccccce---eeeeCCCCCeeeEEEecccceeeccCCceEEEeeecccCceeEe
Confidence 99998884 5566999999999955432 233344444443 3456788899999999776665543
No 104
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.46 E-value=4.3e-13 Score=129.91 Aligned_cols=99 Identities=24% Similarity=0.429 Sum_probs=86.7
Q ss_pred CCEEEEEECCCcEEEEcC-CC---ceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc-----CCceeEEEe-cCC
Q 008510 3 GVGIISASHDCTIRLWAL-TG---QVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-----DGVCVQSIE-HPG 71 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~-~g---~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd-----~~~~~~~l~-h~~ 71 (563)
...|+|||.||+|||||+ .+ -++.+ +.|.+-|+-|+|+..- .|++|+.||+++||| .++.+.++. |.+
T Consensus 270 ~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~ 348 (440)
T KOG0302|consen 270 DGVFASCSCDGSIRIWDIRSGPKKAAVST-KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKA 348 (440)
T ss_pred CceEEeeecCceEEEEEecCCCccceeEe-eccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccC
Confidence 467999999999999999 55 35544 8999999999999876 899999999999999 567788888 999
Q ss_pred cEEEEEEccCCc--EEEEeCCCcEEEEEcCCCc
Q 008510 72 CVWDAKFLENGD--IVTACSDGVTRIWTVHSDK 102 (563)
Q Consensus 72 ~V~~v~~~p~g~--i~sgs~Dg~Irvwd~~~~~ 102 (563)
+|+||.|+|... |+++|.|..|.+||+.-..
T Consensus 349 pItsieW~p~e~s~iaasg~D~QitiWDlsvE~ 381 (440)
T KOG0302|consen 349 PITSIEWHPHEDSVIAASGEDNQITIWDLSVEA 381 (440)
T ss_pred CeeEEEeccccCceEEeccCCCcEEEEEeeccC
Confidence 999999999654 8999999999999997554
No 105
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.46 E-value=2.8e-13 Score=141.83 Aligned_cols=153 Identities=16% Similarity=0.291 Sum_probs=112.3
Q ss_pred CCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCC-C-eEEEEeCCCcEEEEc---CCceeEEEe-cCCcEEE
Q 008510 3 GVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHAS-G-LIVSGSEDRFAKIWK---DGVCVQSIE-HPGCVWD 75 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~-g-~l~s~s~D~tvriWd---~~~~~~~l~-h~~~V~~ 75 (563)
-.+++|||.||+||.||+ ..+-..++.+....|.+|.|+|. + .|+++.+.|.+++|| ..+|...+. |.+.|.|
T Consensus 146 p~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c 225 (839)
T KOG0269|consen 146 PNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLC 225 (839)
T ss_pred ccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEE
Confidence 368999999999999999 77778889999999999999996 4 899999999999999 556666666 9999999
Q ss_pred EEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeeccccccccee--------EE--e-eccCCceEEEeCCCCceeeec
Q 008510 76 AKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELSQY--------KL--C-RKKVGGLKLEDLPGLEALQIP 143 (563)
Q Consensus 76 v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~~~--------~~--~-~~~~~~i~~~d~~~~~~l~~~ 143 (563)
+.|+|++. |||||.|+.|+|||..+.+.-+...+.... .+..+ .+ + ...+-.|.+||++.+=+....
T Consensus 226 ~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTia-pv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t 304 (839)
T KOG0269|consen 226 LNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIA-PVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYAT 304 (839)
T ss_pred EeecCCCceeeecCCCccEEEEeccCCCccceeEEeecc-eeeeeeeccCccchhhhhhccccceEEEEeecccccccee
Confidence 99999888 999999999999999877633322222111 11111 11 1 123468999999755333222
Q ss_pred --ccCCCeEEEEecC
Q 008510 144 --GTNAGQTKVVREG 156 (563)
Q Consensus 144 --g~~dg~~~l~~~~ 156 (563)
.|.+-...+++.+
T Consensus 305 ~~eH~~~vt~i~W~~ 319 (839)
T KOG0269|consen 305 FLEHTDSVTGIAWDS 319 (839)
T ss_pred eeccCccccceeccC
Confidence 4444444444443
No 106
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.42 E-value=5.7e-12 Score=119.49 Aligned_cols=137 Identities=16% Similarity=0.230 Sum_probs=102.9
Q ss_pred CCEEEEEECCCcEEEEcCCCceeEEEecCCCcEEEEEEcCCCeEEEEeCCCcEEEEc--CCceeEEEecCCcEEEEEEcc
Q 008510 3 GVGIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWK--DGVCVQSIEHPGCVWDAKFLE 80 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~~g~~i~~l~gH~~~V~~v~~~p~g~l~s~s~D~tvriWd--~~~~~~~l~h~~~V~~v~~~p 80 (563)
++.|+.+|+||++|+|+.....++....|..++.+++|.++..+++|+-||.||.+| .++..+.-.|...|.||.+.+
T Consensus 25 ~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~~igth~~~i~ci~~~~ 104 (323)
T KOG1036|consen 25 SSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNEDQIGTHDEGIRCIEYSY 104 (323)
T ss_pred CCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCCceEEEeccCceEEEEEecCCcceeeccCCCceEEEEeec
Confidence 356777889999999999444444444699999999999877899999999999999 555555555999999999998
Q ss_pred C-CcEEEEeCCCcEEEEEcCCCceeceeeec--ccccc-cceeEEeeccCCceEEEeCCCCce
Q 008510 81 N-GDIVTACSDGVTRIWTVHSDKVADSLELE--AYASE-LSQYKLCRKKVGGLKLEDLPGLEA 139 (563)
Q Consensus 81 ~-g~i~sgs~Dg~Irvwd~~~~~~~~~~~~~--~~~~~-v~~~~~~~~~~~~i~~~d~~~~~~ 139 (563)
. |.+++||.|++|++||.+........... -+.-. .....+.+..+..+.+||++....
T Consensus 105 ~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~ 167 (323)
T KOG1036|consen 105 EVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLDE 167 (323)
T ss_pred cCCeEEEcccCccEEEEeccccccccccccCceEEEEeccCCEEEEeecCceEEEEEcccccc
Confidence 5 44999999999999999974432211111 11111 234555678889999999986544
No 107
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.41 E-value=1e-11 Score=117.69 Aligned_cols=203 Identities=18% Similarity=0.258 Sum_probs=122.6
Q ss_pred CCCEEEEEECCCcEEEEcC---CC--ceeEEEecCCCcEEEEEEcC-C-C-eEEEEeCCCcEEEEc-C---Cc-------
Q 008510 2 PGVGIISASHDCTIRLWAL---TG--QVLMEMVGHTAIVYSIDSHA-S-G-LIVSGSEDRFAKIWK-D---GV------- 62 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~---~g--~~i~~l~gH~~~V~~v~~~p-~-g-~l~s~s~D~tvriWd-~---~~------- 62 (563)
-|+++|+||.|++|+|||. +| .+....+.|.+.|..|.|.+ . | .+++||.||+++||. . .+
T Consensus 24 ~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv 103 (361)
T KOG2445|consen 24 YGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWV 103 (361)
T ss_pred cCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeE
Confidence 3899999999999999996 33 47778899999999999954 4 6 899999999999998 1 11
Q ss_pred eeEEEe-cCCcEEEEEEccC--Cc-EEEEeCCCcEEEEEcCCCceeceeeec-ccccccceeEEeeccCCceEEEeCC-C
Q 008510 63 CVQSIE-HPGCVWDAKFLEN--GD-IVTACSDGVTRIWTVHSDKVADSLELE-AYASELSQYKLCRKKVGGLKLEDLP-G 136 (563)
Q Consensus 63 ~~~~l~-h~~~V~~v~~~p~--g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~i~~~d~~-~ 136 (563)
...++. ....|..|.|.|. |- +|+++.||++|||+.-..--+..-.+. .+..-+..-........++. |... -
T Consensus 104 ~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~Cvs-Wn~sr~ 182 (361)
T KOG2445|consen 104 RRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVS-WNPSRM 182 (361)
T ss_pred EEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEe-eccccc
Confidence 122333 5569999999995 44 899999999999997544322211111 11100000000001112222 3311 1
Q ss_pred CceeeecccCCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-C-CCCe---eee
Q 008510 137 LEALQIPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-G-DGEP---TRK 211 (563)
Q Consensus 137 ~~~l~~~g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~-dg~~---~~~ 211 (563)
.+.+...|+.+.. ..-++..+|.++...++|.++.++.+. . |-|.++.| | -|+. ++.
T Consensus 183 ~~p~iAvgs~e~a----~~~~~~~Iye~~e~~rKw~kva~L~d~-------------~-dpI~di~wAPn~Gr~y~~lAv 244 (361)
T KOG2445|consen 183 HEPLIAVGSDEDA----PHLNKVKIYEYNENGRKWLKVAELPDH-------------T-DPIRDISWAPNIGRSYHLLAV 244 (361)
T ss_pred cCceEEEEcccCC----ccccceEEEEecCCcceeeeehhcCCC-------------C-CcceeeeeccccCCceeeEEE
Confidence 1122222322210 001134566677777789988777643 2 66777777 3 3332 444
Q ss_pred ecCCCCCChhHHH
Q 008510 212 LPYNRSDNPYDAA 224 (563)
Q Consensus 212 ~~~n~~~~~w~~a 224 (563)
..-|+ +++|++.
T Consensus 245 A~kDg-v~I~~v~ 256 (361)
T KOG2445|consen 245 ATKDG-VRIFKVK 256 (361)
T ss_pred eecCc-EEEEEEe
Confidence 45555 7777764
No 108
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.40 E-value=3.3e-12 Score=126.75 Aligned_cols=100 Identities=15% Similarity=0.314 Sum_probs=87.8
Q ss_pred CCCEEEEEECCCcEEEEcC-C--CceeEEEecCCCcEEEEEEcCCC--eEEEEeCCCcEEEEc---CCceeEEEe-cCCc
Q 008510 2 PGVGIISASHDCTIRLWAL-T--GQVLMEMVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK---DGVCVQSIE-HPGC 72 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~--g~~i~~l~gH~~~V~~v~~~p~g--~l~s~s~D~tvriWd---~~~~~~~l~-h~~~ 72 (563)
+...|++++.|+.+.|||+ + .++.+...+|++.|.|++|+|-+ .|||||.|++|.+|| -.++++++. |...
T Consensus 239 h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~de 318 (422)
T KOG0264|consen 239 HEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDE 318 (422)
T ss_pred chhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcc
Confidence 3467999999999999999 3 35667788999999999999975 899999999999999 345777887 9999
Q ss_pred EEEEEEccCCc--EEEEeCCCcEEEEEcCCC
Q 008510 73 VWDAKFLENGD--IVTACSDGVTRIWTVHSD 101 (563)
Q Consensus 73 V~~v~~~p~g~--i~sgs~Dg~Irvwd~~~~ 101 (563)
|.+|.|+|+.+ +++++.|+.+.|||+..-
T Consensus 319 v~~V~WSPh~etvLASSg~D~rl~vWDls~i 349 (422)
T KOG0264|consen 319 VFQVEWSPHNETVLASSGTDRRLNVWDLSRI 349 (422)
T ss_pred eEEEEeCCCCCceeEecccCCcEEEEecccc
Confidence 99999999876 899999999999999754
No 109
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.40 E-value=1.2e-11 Score=129.20 Aligned_cols=186 Identities=19% Similarity=0.289 Sum_probs=137.6
Q ss_pred EEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEEEEEc
Q 008510 5 GIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDAKFL 79 (563)
Q Consensus 5 ~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~v~~~ 79 (563)
.++||+ .+.+++|+. +++|++++.. +++.+.+|.|.+ ++++|...|.+.++| +...+.+++ |.+.+|+++.+
T Consensus 387 ~~~Sga-~~SikiWn~~t~kciRTi~~--~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~ 463 (888)
T KOG0306|consen 387 LLASGA-GESIKIWNRDTLKCIRTITC--GYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLS 463 (888)
T ss_pred eeeecC-CCcEEEEEccCcceeEEecc--ccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeec
Confidence 344444 568999999 7999999974 489999999988 999999999999999 778888888 99999999999
Q ss_pred cCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccccceeEEeeccCCceEEEeCCCCceeeecccCCCeEEEEecCCC
Q 008510 80 ENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLCRKKVGGLKLEDLPGLEALQIPGTNAGQTKVVREGDN 158 (563)
Q Consensus 80 p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~d~~~~~~l~~~g~~dg~~~l~~~~~~ 158 (563)
||+. +++||.|.+|++||..--. . .+......++-.....+.+. ..++.+..++||.+..+.--|.
T Consensus 464 pD~~g~vT~saDktVkfWdf~l~~--------~-~~gt~~k~lsl~~~rtLel~----ddvL~v~~Spdgk~LaVsLLdn 530 (888)
T KOG0306|consen 464 PDNKGFVTGSADKTVKFWDFKLVV--------S-VPGTQKKVLSLKHTRTLELE----DDVLCVSVSPDGKLLAVSLLDN 530 (888)
T ss_pred CCCCceEEecCCcEEEEEeEEEEe--------c-cCcccceeeeeccceEEecc----ccEEEEEEcCCCcEEEEEeccC
Confidence 9998 9999999999999975321 0 00111111233333334432 2567777899999988887764
Q ss_pred eE-EEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeeeecCCCCCChhHHH
Q 008510 159 GV-AYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRKLPYNRSDNPYDAA 224 (563)
Q Consensus 159 ~~-~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~~~~~w~~a 224 (563)
.+ +|.-| +-++ .+ ..=||. =.|.++|+ +|++.+.+++.|+++++|-..
T Consensus 531 TVkVyflD--tlKF-----fl----------sLYGHk-LPV~smDIS~DSklivTgSADKnVKiWGLd 580 (888)
T KOG0306|consen 531 TVKVYFLD--TLKF-----FL----------SLYGHK-LPVLSMDISPDSKLIVTGSADKNVKIWGLD 580 (888)
T ss_pred eEEEEEec--ceee-----ee----------eecccc-cceeEEeccCCcCeEEeccCCCceEEeccc
Confidence 44 44444 2211 11 122554 45899999 999999999999999999764
No 110
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.40 E-value=4.3e-12 Score=125.06 Aligned_cols=182 Identities=20% Similarity=0.247 Sum_probs=143.2
Q ss_pred CEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEEEEE
Q 008510 4 VGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDAKF 78 (563)
Q Consensus 4 ~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~v~~ 78 (563)
..+++||.|.++-++|. .++.+.+|+||+-.|+++.++|+. .+++++.|..+|||. ...+..... |...|..+..
T Consensus 232 ~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~ 311 (506)
T KOG0289|consen 232 SKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSL 311 (506)
T ss_pred CcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeee
Confidence 56899999999999999 889999999999999999999998 899999999999999 444555555 9999999999
Q ss_pred ccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccccceeEEeeccCCceEEEeCCCCceeeecccCCCeEEEEecCC
Q 008510 79 LENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLCRKKVGGLKLEDLPGLEALQIPGTNAGQTKVVREGD 157 (563)
Q Consensus 79 ~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~d~~~~~~l~~~g~~dg~~~l~~~~~ 157 (563)
+|+|+ +++++.||+..+.|++++++.....- +-.+-+......|+||-+......|
T Consensus 312 h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~-----------------------~~s~v~~ts~~fHpDgLifgtgt~d 368 (506)
T KOG0289|consen 312 HPTGEYLLSASNDGTWAFSDISSGSQLTVVSD-----------------------ETSDVEYTSAAFHPDGLIFGTGTPD 368 (506)
T ss_pred ccCCcEEEEecCCceEEEEEccCCcEEEEEee-----------------------ccccceeEEeeEcCCceEEeccCCC
Confidence 99999 99999999999999999984321110 0011112234478888777766666
Q ss_pred CeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeeeecCCCCCChhHHHH
Q 008510 158 NGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRKLPYNRSDNPYDAAD 225 (563)
Q Consensus 158 ~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~~~~~w~~a~ 225 (563)
+++.+||...+. ...-|.||+ ..|-.+.| ++|-.++....|..+..|+...
T Consensus 369 -~~vkiwdlks~~---------------~~a~Fpght-~~vk~i~FsENGY~Lat~add~~V~lwDLRK 420 (506)
T KOG0289|consen 369 -GVVKIWDLKSQT---------------NVAKFPGHT-GPVKAISFSENGYWLATAADDGSVKLWDLRK 420 (506)
T ss_pred -ceEEEEEcCCcc---------------ccccCCCCC-CceeEEEeccCceEEEEEecCCeEEEEEehh
Confidence 666778875542 122367766 78999999 8888888888888899999853
No 111
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.40 E-value=1.9e-11 Score=115.10 Aligned_cols=215 Identities=15% Similarity=0.144 Sum_probs=134.5
Q ss_pred CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCC---C-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcE
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHAS---G-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCV 73 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~---g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V 73 (563)
|...|.|+|.|.++|+||. +-+....|+ -.+.||+-+++|- . .+++|..|-.||+-| +|.+-+++. |.+.|
T Consensus 113 DtGmFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~v 191 (397)
T KOG4283|consen 113 DTGMFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGV 191 (397)
T ss_pred cCceeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCce
Confidence 5568999999999999999 555555554 5788999999984 2 678888888999999 999999999 99999
Q ss_pred EEEEEccCCc--EEEEeCCCcEEEEEcCCCc-ee---cee---------eecccccccceeEE--------eeccCCceE
Q 008510 74 WDAKFLENGD--IVTACSDGVTRIWTVHSDK-VA---DSL---------ELEAYASELSQYKL--------CRKKVGGLK 130 (563)
Q Consensus 74 ~~v~~~p~g~--i~sgs~Dg~Irvwd~~~~~-~~---~~~---------~~~~~~~~v~~~~~--------~~~~~~~i~ 130 (563)
.+|.|+|..+ +++|+.||.||+||+|... +. ... .-.++...+..... ....+..++
T Consensus 192 laV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r 271 (397)
T KOG4283|consen 192 LAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIR 271 (397)
T ss_pred EEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceE
Confidence 9999999888 7999999999999998541 11 000 01122223333333 344567889
Q ss_pred EEeCCCCceeeec-ccC-----CCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-
Q 008510 131 LEDLPGLEALQIP-GTN-----AGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI- 203 (563)
Q Consensus 131 ~~d~~~~~~l~~~-g~~-----dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~- 203 (563)
+|....++..... |.. .+.-....+.+..+....-.. +..- +-....+...+.+++| +..+.+..+
T Consensus 272 ~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~-~~la-----ll~~~sgs~ir~l~~h-~k~i~c~~~~ 344 (397)
T KOG4283|consen 272 VWNMESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPND-GSLA-----LLNLLEGSFVRRLSTH-LKRINCAAYR 344 (397)
T ss_pred EeecccCcccccccccccccccccceEEEeecccceEEEEecC-CeEE-----EEEccCceEEEeeecc-cceeeEEeec
Confidence 9988665443222 111 010011111111111111000 0000 0000111134445566 455555555
Q ss_pred CCCCeeeeecCCCCCChhHHH
Q 008510 204 GDGEPTRKLPYNRSDNPYDAA 224 (563)
Q Consensus 204 ~dg~~~~~~~~n~~~~~w~~a 224 (563)
++=+..+++..|.++.+|..+
T Consensus 345 ~~fq~~~tg~~d~ni~~w~p~ 365 (397)
T KOG4283|consen 345 PDFEQCFTGDMNGNIYMWSPA 365 (397)
T ss_pred CchhhhhccccCCcccccccc
Confidence 777778899999999999885
No 112
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.39 E-value=2.2e-12 Score=126.19 Aligned_cols=171 Identities=19% Similarity=0.272 Sum_probs=127.5
Q ss_pred CCCEEEEEECCCcEEEEcC-CCceeEEEe-cCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc-CCceeEEEe--cCCcEEE
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVLMEMV-GHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-DGVCVQSIE--HPGCVWD 75 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~-gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd-~~~~~~~l~--h~~~V~~ 75 (563)
|++++++|+.|..+++||+ +|++...+. +|...+.|++|.||| .+++||.|+++..|| +|+.+...+ ..-.|++
T Consensus 280 DdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~d 359 (519)
T KOG0293|consen 280 DDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHD 359 (519)
T ss_pred CCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeEE
Confidence 5789999999999999999 899887764 355789999999999 999999999999999 888877776 2337999
Q ss_pred EEEccCCc-EEEEeCCCcEEEEEcCCCcee----ceeeecccccc-cceeEEeeccCCceEEEeCCCCceeeec-ccCCC
Q 008510 76 AKFLENGD-IVTACSDGVTRIWTVHSDKVA----DSLELEAYASE-LSQYKLCRKKVGGLKLEDLPGLEALQIP-GTNAG 148 (563)
Q Consensus 76 v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~----~~~~~~~~~~~-v~~~~~~~~~~~~i~~~d~~~~~~l~~~-g~~dg 148 (563)
++..+||. +++.+.|..|++|+..+.... ....+..+.-+ -..+.+..-.+..+.+||+.....+... |++.|
T Consensus 360 lait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~ 439 (519)
T KOG0293|consen 360 LAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQG 439 (519)
T ss_pred EEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhccccc
Confidence 99999999 888889999999998765322 11122222211 2345556667789999999855433322 44433
Q ss_pred e------------EEEEecCCCeEEEEEecccceEE
Q 008510 149 Q------------TKVVREGDNGVAYSWDMKEQKWD 172 (563)
Q Consensus 149 ~------------~~l~~~~~~~~~~~wd~~~~~w~ 172 (563)
. ..+..++.+..+|+|+...+.-.
T Consensus 440 ~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll 475 (519)
T KOG0293|consen 440 HFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLL 475 (519)
T ss_pred ceEEEeccCCCCcceEEecCCCceEEEEEccCCcee
Confidence 2 24555556688999998887644
No 113
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.39 E-value=3.9e-12 Score=127.68 Aligned_cols=99 Identities=23% Similarity=0.399 Sum_probs=79.5
Q ss_pred CEEEEEECCCcEEEEcC-C-CceeEEEe-----cCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc-CC---ceeEEEe--c
Q 008510 4 VGIISASHDCTIRLWAL-T-GQVLMEMV-----GHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-DG---VCVQSIE--H 69 (563)
Q Consensus 4 ~~l~s~s~DgtIrlWd~-~-g~~i~~l~-----gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd-~~---~~~~~l~--h 69 (563)
..|+|||.||++|+|++ . .+.+..++ |..-.+.+++|+++| .+++|+.||+|.+|+ .+ +....+. |
T Consensus 282 ~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH 361 (641)
T KOG0772|consen 282 EEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAH 361 (641)
T ss_pred cceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeecc
Confidence 56999999999999999 2 23333332 333467899999999 899999999999999 22 2333333 7
Q ss_pred CC--cEEEEEEccCCc-EEEEeCCCcEEEEEcCCCc
Q 008510 70 PG--CVWDAKFLENGD-IVTACSDGVTRIWTVHSDK 102 (563)
Q Consensus 70 ~~--~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~ 102 (563)
.. .|.||+|+++|+ +++-|.|+++++||++..+
T Consensus 362 ~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~k 397 (641)
T KOG0772|consen 362 LPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFK 397 (641)
T ss_pred CCCCceeEEEeccccchhhhccCCCceeeeeccccc
Confidence 66 899999999999 9999999999999999876
No 114
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.39 E-value=4.2e-12 Score=121.19 Aligned_cols=98 Identities=24% Similarity=0.434 Sum_probs=91.7
Q ss_pred CEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC--eEEEEeCCCcEEEEc--CCceeEEEe----cCCcEE
Q 008510 4 VGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK--DGVCVQSIE----HPGCVW 74 (563)
Q Consensus 4 ~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g--~l~s~s~D~tvriWd--~~~~~~~l~----h~~~V~ 74 (563)
-++|.||.-|.|||-|+ ++++.+.+.||...|..+.++|+. .++|+|.|.+||+|+ +..|+..+. |.+.|.
T Consensus 106 p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVL 185 (385)
T KOG1034|consen 106 PFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVL 185 (385)
T ss_pred eeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEE
Confidence 46888889999999999 899999999999999999999987 899999999999999 889998886 999999
Q ss_pred EEEEccCCc-EEEEeCCCcEEEEEcCCC
Q 008510 75 DAKFLENGD-IVTACSDGVTRIWTVHSD 101 (563)
Q Consensus 75 ~v~~~p~g~-i~sgs~Dg~Irvwd~~~~ 101 (563)
+|.|+++|+ |+++|.|.++++|++...
T Consensus 186 SvD~~~~gd~i~ScGmDhslk~W~l~~~ 213 (385)
T KOG1034|consen 186 SVDFSLDGDRIASCGMDHSLKLWRLNVK 213 (385)
T ss_pred EEEEcCCCCeeeccCCcceEEEEecChh
Confidence 999999999 999999999999999844
No 115
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.37 E-value=5.9e-13 Score=138.37 Aligned_cols=100 Identities=20% Similarity=0.465 Sum_probs=91.2
Q ss_pred CCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEEEE
Q 008510 3 GVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDAK 77 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~v~ 77 (563)
++.+++|+.|..+-+|.. .-.++..|.||++.|.|+.|+++. .+++|+.||+||+|| .++.++++. |...+.+|.
T Consensus 40 ~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~ 119 (825)
T KOG0267|consen 40 SRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVD 119 (825)
T ss_pred ceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceee
Confidence 577899999999999998 667777899999999999999987 899999999999999 888888888 999999999
Q ss_pred EccCCc-EEEEeCCCcEEEEEcCCCc
Q 008510 78 FLENGD-IVTACSDGVTRIWTVHSDK 102 (563)
Q Consensus 78 ~~p~g~-i~sgs~Dg~Irvwd~~~~~ 102 (563)
|+|-|. .++|+.|+.+++||.+..-
T Consensus 120 f~P~~~~~a~gStdtd~~iwD~Rk~G 145 (825)
T KOG0267|consen 120 FHPYGEFFASGSTDTDLKIWDIRKKG 145 (825)
T ss_pred eccceEEeccccccccceehhhhccC
Confidence 999998 8999999999999998543
No 116
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.36 E-value=1e-10 Score=121.40 Aligned_cols=140 Identities=19% Similarity=0.248 Sum_probs=109.4
Q ss_pred CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc-CCceeEE---Ee-cCCcEE
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-DGVCVQS---IE-HPGCVW 74 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd-~~~~~~~---l~-h~~~V~ 74 (563)
+|.+|+|.+.+|+|.-||+ +++.+..+....+.|++++.+|.+ .++.|++||.+...+ ....++. +. .++.|.
T Consensus 79 e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvL 158 (691)
T KOG2048|consen 79 EGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVL 158 (691)
T ss_pred cCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEE
Confidence 5778999999999999999 999999999999999999999998 899999999777777 3333322 22 567999
Q ss_pred EEEEccCCc-EEEEeCCCcEEEEEcCCCceeceee--eccccc-c----------cceeEEeeccCCceEEEeCCCCcee
Q 008510 75 DAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLE--LEAYAS-E----------LSQYKLCRKKVGGLKLEDLPGLEAL 140 (563)
Q Consensus 75 ~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~--~~~~~~-~----------v~~~~~~~~~~~~i~~~d~~~~~~l 140 (563)
+++|+|+|. |++||.||.||+||..++....... +..... . -....+++++.|.|++||......+
T Consensus 159 slsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gTLi 238 (691)
T KOG2048|consen 159 SLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGTLI 238 (691)
T ss_pred EEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCcchh
Confidence 999999998 9999999999999999987554111 111111 0 1244567888899999998766444
Q ss_pred e
Q 008510 141 Q 141 (563)
Q Consensus 141 ~ 141 (563)
+
T Consensus 239 q 239 (691)
T KOG2048|consen 239 Q 239 (691)
T ss_pred h
Confidence 3
No 117
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=1.4e-11 Score=127.47 Aligned_cols=152 Identities=19% Similarity=0.260 Sum_probs=107.8
Q ss_pred CCEEEEEECCCcEEEEcC-CCc-eeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEEE
Q 008510 3 GVGIISASHDCTIRLWAL-TGQ-VLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDA 76 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~-~g~-~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~v 76 (563)
+..+.+|+.|+.|..+|+ ..+ ...++.+|...|+.++|++|+ +++|||.|+.+.||| +.+.++.+. |.+.|..+
T Consensus 270 ~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~ 349 (484)
T KOG0305|consen 270 SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKAL 349 (484)
T ss_pred CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEe
Confidence 467899999999999999 443 334589999999999999999 999999999999999 556666666 99999999
Q ss_pred EEccC--CcEEEE--eCCCcEEEEEcCCCceeceeeecccccccceeE--------Ee--eccCCceEEEeCCCCceeee
Q 008510 77 KFLEN--GDIVTA--CSDGVTRIWTVHSDKVADSLELEAYASELSQYK--------LC--RKKVGGLKLEDLPGLEALQI 142 (563)
Q Consensus 77 ~~~p~--g~i~sg--s~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~~~~--------~~--~~~~~~i~~~d~~~~~~l~~ 142 (563)
+|+|- |.+|+| +.|+.|++||..++.......-. ..|..+. ++ +-..+.|.+|+++....+..
T Consensus 350 awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtg---sQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~ 426 (484)
T KOG0305|consen 350 AWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTG---SQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAE 426 (484)
T ss_pred eeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccC---CceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeee
Confidence 99994 347776 46999999999988744322111 1122111 11 22346889999976544332
Q ss_pred c-ccCCCeEEEEecCC
Q 008510 143 P-GTNAGQTKVVREGD 157 (563)
Q Consensus 143 ~-g~~dg~~~l~~~~~ 157 (563)
. ||......+..++|
T Consensus 427 l~gH~~RVl~la~SPd 442 (484)
T KOG0305|consen 427 LLGHTSRVLYLALSPD 442 (484)
T ss_pred ecCCcceeEEEEECCC
Confidence 2 44444434443333
No 118
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.33 E-value=1.9e-11 Score=113.32 Aligned_cols=189 Identities=19% Similarity=0.213 Sum_probs=128.3
Q ss_pred EEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe---cCCcEEEEEEccCC-c-EEEEeCCCcEEEEE
Q 008510 26 MEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE---HPGCVWDAKFLENG-D-IVTACSDGVTRIWT 97 (563)
Q Consensus 26 ~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~---h~~~V~~v~~~p~g-~-i~sgs~Dg~Irvwd 97 (563)
+.+.+|...|.+|+|+-+| .+++|+.|+++++|+ ..+...... |.+.|-.++|.|.. + +++++.|.+||+||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 5678999999999999999 999999999999999 333333332 88899999999854 3 89999999999999
Q ss_pred cCCCceeceeeecccc-----cccceeEEeeccCCceEEEeCCCCceeeec----------ccCCCeEEEEecCCCeEEE
Q 008510 98 VHSDKVADSLELEAYA-----SELSQYKLCRKKVGGLKLEDLPGLEALQIP----------GTNAGQTKVVREGDNGVAY 162 (563)
Q Consensus 98 ~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~i~~~d~~~~~~l~~~----------g~~dg~~~l~~~~~~~~~~ 162 (563)
.+++++....+...-. .+.....+.+..+..|.+.|.++....... .+.++.+.+..++.+.+
T Consensus 94 ~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v-- 171 (313)
T KOG1407|consen 94 IRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCV-- 171 (313)
T ss_pred eccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceE--
Confidence 9999865443322111 123345555566667777777655443222 12222222222222221
Q ss_pred EEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeeeecCCCCCChhHHHHHHHHhc
Q 008510 163 SWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRKLPYNRSDNPYDAADKWLLKE 231 (563)
Q Consensus 163 ~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~~~~~w~~a~~f~~~~ 231 (563)
++...+. -...+.++.|. -..++|.| |+|++.+.++-|..+..|++.+--|.|.
T Consensus 172 -------------~ILsyps-Lkpv~si~AH~-snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~ 226 (313)
T KOG1407|consen 172 -------------EILSYPS-LKPVQSIKAHP-SNCICIEFDPDGRYFATGSADALVSLWDVDELICERC 226 (313)
T ss_pred -------------EEEeccc-cccccccccCC-cceEEEEECCCCceEeeccccceeeccChhHhhhhee
Confidence 0111111 01334466676 55899999 9999999999999999999988776653
No 119
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.33 E-value=4.3e-12 Score=122.50 Aligned_cols=232 Identities=15% Similarity=0.216 Sum_probs=137.8
Q ss_pred eeEEEecCCCcEEEEEEcCCC--eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEEEEEccCCcEEEEeCCCcEEEEEc
Q 008510 24 VLMEMVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDAKFLENGDIVTACSDGVTRIWTV 98 (563)
Q Consensus 24 ~i~~l~gH~~~V~~v~~~p~g--~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~v~~~p~g~i~sgs~Dg~Irvwd~ 98 (563)
.+..+.||.+.|+|++=+|.. .++||+.||.|+||| +..|+.++. |.+.|..+++.. +.++++|.|.+|+.|..
T Consensus 58 Fv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~-~~~~tvgdDKtvK~wk~ 136 (433)
T KOG0268|consen 58 FVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ-TSFFTVGDDKTVKQWKI 136 (433)
T ss_pred chhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc-cceEEecCCcceeeeec
Confidence 345679999999999999987 799999999999999 778999999 999999999987 55999999999999997
Q ss_pred CCCceeceeeecccccccceeE---EeeccCCceEEEeCCCCceeee-----------cccCCCeEEEEecCCCeEEEEE
Q 008510 99 HSDKVADSLELEAYASELSQYK---LCRKKVGGLKLEDLPGLEALQI-----------PGTNAGQTKVVREGDNGVAYSW 164 (563)
Q Consensus 99 ~~~~~~~~~~~~~~~~~v~~~~---~~~~~~~~i~~~d~~~~~~l~~-----------~g~~dg~~~l~~~~~~~~~~~w 164 (563)
... .+........-..++... .-......|.+||......++. ...+--...+..++.+..++++
T Consensus 137 ~~~-p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLy 215 (433)
T KOG0268|consen 137 DGP-PLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLY 215 (433)
T ss_pred cCC-cceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEE
Confidence 653 111110000000011100 0011112567777632211111 1111111122222223334444
Q ss_pred ecccc---------------eEEEeCc-EeeCCCCCC-----------CceeecCcccCcEEEEEc-CCCCeeeeecCCC
Q 008510 165 DMKEQ---------------KWDKLGE-VVDGPDDGM-----------NRPILDGIQYDYVFDVDI-GDGEPTRKLPYNR 216 (563)
Q Consensus 165 d~~~~---------------~w~~~g~-v~~~~~~~~-----------~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~ 216 (563)
|..+. .|.+-+. ++.+..+.. ....|.||- .-|.+||+ +.|+.+.+++||+
T Consensus 216 D~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhv-sAV~dVdfsptG~EfvsgsyDk 294 (433)
T KOG0268|consen 216 DLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHV-SAVMDVDFSPTGQEFVSGSYDK 294 (433)
T ss_pred ecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccchhhcccc-eeEEEeccCCCcchhccccccc
Confidence 44332 2443211 122222211 334566665 66899999 9999999999999
Q ss_pred CCChhHHHHHHHHhcCCCcccHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCCCCCCCCC
Q 008510 217 SDNPYDAADKWLLKENLPFSYRQQIVEFILQNTGQKDFTLNTSFRDPYTGASAYVPGQPSS 277 (563)
Q Consensus 217 ~~~~w~~a~~f~~~~~l~~~~~~~v~~fi~~n~~~~~~~~~~~~~~p~~~~~~y~p~~~~~ 277 (563)
++++|.+....- ..| |-.+.++.+ ++-.|+-.++|+-.++-.
T Consensus 295 sIRIf~~~~~~S----------Rdi--YhtkRMq~V-------~~Vk~S~Dskyi~SGSdd 336 (433)
T KOG0268|consen 295 SIRIFPVNHGHS----------RDI--YHTKRMQHV-------FCVKYSMDSKYIISGSDD 336 (433)
T ss_pred eEEEeecCCCcc----------hhh--hhHhhhhee-------eEEEEeccccEEEecCCC
Confidence 999999854311 111 344444443 344566667777665443
No 120
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.33 E-value=4.6e-11 Score=109.70 Aligned_cols=140 Identities=25% Similarity=0.345 Sum_probs=104.6
Q ss_pred EEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEE-cCCCeEEEEeCCCcEEEEc--CCceeEEEe---cCC------
Q 008510 5 GIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDS-HASGLIVSGSEDRFAKIWK--DGVCVQSIE---HPG------ 71 (563)
Q Consensus 5 ~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~-~p~g~l~s~s~D~tvriWd--~~~~~~~l~---h~~------ 71 (563)
-++.++.|+.+.-||+ +|+..++++||+++|.++.- +.++.+.||++||++|||| ++++++++. |+.
T Consensus 128 Si~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~ 207 (325)
T KOG0649|consen 128 SILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDW 207 (325)
T ss_pred cEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCccc
Confidence 4556668999999999 99999999999999999987 3445999999999999999 889998886 321
Q ss_pred cEEEEEEccCCcEEEEeCCCcEEEEEcCCCceeceeeeccccccc---ceeEEeeccCCceEEEeCCCCceeeecc
Q 008510 72 CVWDAKFLENGDIVTACSDGVTRIWTVHSDKVADSLELEAYASEL---SQYKLCRKKVGGLKLEDLPGLEALQIPG 144 (563)
Q Consensus 72 ~V~~v~~~p~g~i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v---~~~~~~~~~~~~i~~~d~~~~~~l~~~g 144 (563)
.-|-.+..-+.+-..++..-.+.+|.+++.......++.+....+ ....+.+.+.+++.-|.+.+.-....++
T Consensus 208 g~wigala~~edWlvCGgGp~lslwhLrsse~t~vfpipa~v~~v~F~~d~vl~~G~g~~v~~~~l~Gvl~a~ip~ 283 (325)
T KOG0649|consen 208 GKWIGALAVNEDWLVCGGGPKLSLWHLRSSESTCVFPIPARVHLVDFVDDCVLIGGEGNHVQSYTLNGVLQANIPV 283 (325)
T ss_pred CceeEEEeccCceEEecCCCceeEEeccCCCceEEEecccceeEeeeecceEEEeccccceeeeeeccEEEEeccC
Confidence 222233334556445555678999999999888788887766553 3556666767788888877543333443
No 121
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.33 E-value=1.1e-11 Score=126.92 Aligned_cols=101 Identities=22% Similarity=0.403 Sum_probs=89.2
Q ss_pred CCCEEEEEECCCcEEEEcC--CC------ceeEEEecCCCcEEEEEEcCCC--eEEEEeCCCcEEEEc--CCceeEEEe-
Q 008510 2 PGVGIISASHDCTIRLWAL--TG------QVLMEMVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK--DGVCVQSIE- 68 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~--~g------~~i~~l~gH~~~V~~v~~~p~g--~l~s~s~D~tvriWd--~~~~~~~l~- 68 (563)
|..+++.++.||.|++|.+ .| ++...+.+|...|+++.|+|=. .+++++.|-+|++|| +++....+.
T Consensus 639 D~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~g 718 (1012)
T KOG1445|consen 639 DDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVG 718 (1012)
T ss_pred ChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheecc
Confidence 5678999999999999998 22 4567889999999999999954 899999999999999 555555565
Q ss_pred cCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCc
Q 008510 69 HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDK 102 (563)
Q Consensus 69 h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~ 102 (563)
|++.|..++|+|+|+ +++.|.||+||||..+++.
T Consensus 719 HtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e 753 (1012)
T KOG1445|consen 719 HTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSRE 753 (1012)
T ss_pred CcCceeEEEECCCCcceeeeecCceEEEeCCCCCC
Confidence 999999999999999 9999999999999998875
No 122
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.32 E-value=1.3e-10 Score=110.44 Aligned_cols=100 Identities=20% Similarity=0.255 Sum_probs=83.4
Q ss_pred CCCEEEEEECCCcEEEEcCCCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEecCCcEEEEEE
Q 008510 2 PGVGIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIEHPGCVWDAKF 78 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~h~~~V~~v~~ 78 (563)
|...+++|+-||.||++|+.+.....+..|...|.|+..++.. .+++||+|++|++|| ...+..++..+..|.|+..
T Consensus 64 d~~~~~~G~~dg~vr~~Dln~~~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v 143 (323)
T KOG1036|consen 64 DESTIVTGGLDGQVRRYDLNTGNEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDV 143 (323)
T ss_pred CCceEEEeccCceEEEEEecCCcceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEEEec
Confidence 4567899999999999999555556677899999999999854 999999999999999 4445555666779999987
Q ss_pred ccCCcEEEEeCCCcEEEEEcCCCc
Q 008510 79 LENGDIVTACSDGVTRIWTVHSDK 102 (563)
Q Consensus 79 ~p~g~i~sgs~Dg~Irvwd~~~~~ 102 (563)
..+ +|+.|+.|..|.+||++.-.
T Consensus 144 ~g~-~LvVg~~~r~v~iyDLRn~~ 166 (323)
T KOG1036|consen 144 SGN-RLVVGTSDRKVLIYDLRNLD 166 (323)
T ss_pred cCC-EEEEeecCceEEEEEccccc
Confidence 543 49999999999999999765
No 123
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.32 E-value=7.2e-11 Score=109.89 Aligned_cols=183 Identities=19% Similarity=0.284 Sum_probs=121.9
Q ss_pred EEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCC
Q 008510 27 EMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSD 101 (563)
Q Consensus 27 ~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~ 101 (563)
.+.||..+++.+.++.+| .|.||+.|.+..||- +|+.+.++. |++.|||+....+.+ +++|+.|.++++||+.+|
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG 84 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG 84 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence 368999999999999999 999999999999999 899999998 999999999999888 999999999999999999
Q ss_pred ceeceeeecc----cccccc--eeEEe----eccCCceEEEeCCCCc--------eeeec----------ccCCCeEEEE
Q 008510 102 KVADSLELEA----YASELS--QYKLC----RKKVGGLKLEDLPGLE--------ALQIP----------GTNAGQTKVV 153 (563)
Q Consensus 102 ~~~~~~~~~~----~~~~v~--~~~~~----~~~~~~i~~~d~~~~~--------~l~~~----------g~~dg~~~l~ 153 (563)
++.-...... ..-... ...++ ....+.|.++|++..+ .+.++ ..+-+++.+.
T Consensus 85 k~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~ 164 (327)
T KOG0643|consen 85 KQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIA 164 (327)
T ss_pred cEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEE
Confidence 9654332211 111111 11111 1223567788877322 11111 2223333443
Q ss_pred ecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeeeecCCCCCChhHHHH
Q 008510 154 REGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRKLPYNRSDNPYDAAD 225 (563)
Q Consensus 154 ~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~~~~~w~~a~ 225 (563)
.+.+ +.+.+||..++. .++.+. +-|. ..|.++.+ +|+....+.+-|.+.+.|++..
T Consensus 165 Ghe~-G~is~~da~~g~-----~~v~s~---------~~h~-~~Ind~q~s~d~T~FiT~s~Dttakl~D~~t 221 (327)
T KOG0643|consen 165 GHED-GSISIYDARTGK-----ELVDSD---------EEHS-SKINDLQFSRDRTYFITGSKDTTAKLVDVRT 221 (327)
T ss_pred ecCC-CcEEEEEcccCc-----eeeech---------hhhc-cccccccccCCcceEEecccCccceeeeccc
Confidence 3333 344466655432 111110 0011 23667777 7888888888888888888754
No 124
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.32 E-value=1.4e-12 Score=137.40 Aligned_cols=206 Identities=19% Similarity=0.345 Sum_probs=136.3
Q ss_pred CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEEE
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDA 76 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~v 76 (563)
.|.++++|++|..||||+. ++.|+....||.+.|..++++.+. .++++|.|..||+|. ++..+..+. |++.|+++
T Consensus 201 tg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtai 280 (1113)
T KOG0644|consen 201 TGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAI 280 (1113)
T ss_pred ccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceeee
Confidence 3789999999999999999 899999999999999999999888 899999999999999 888888888 99999999
Q ss_pred EEccCCcEEEEeCCCcEEEEEcC-CCceeceeeecccccc-cc--------eeEEeeccCCceEEEeCC-----CCceee
Q 008510 77 KFLENGDIVTACSDGVTRIWTVH-SDKVADSLELEAYASE-LS--------QYKLCRKKVGGLKLEDLP-----GLEALQ 141 (563)
Q Consensus 77 ~~~p~g~i~sgs~Dg~Irvwd~~-~~~~~~~~~~~~~~~~-v~--------~~~~~~~~~~~i~~~d~~-----~~~~l~ 141 (563)
+|+|- .+.+.||++++||.+ ..+.....+...-... +. ....++..++.-..|.++ ......
T Consensus 281 afsP~---~sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif 357 (1113)
T KOG0644|consen 281 AFSPR---ASSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIF 357 (1113)
T ss_pred ccCcc---ccCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhccceEE
Confidence 99996 477899999999998 3332221111111111 11 112233333333333332 111112
Q ss_pred ecccCCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc--CCCCeeeeecCCCCCC
Q 008510 142 IPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI--GDGEPTRKLPYNRSDN 219 (563)
Q Consensus 142 ~~g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~--~dg~~~~~~~~n~~~~ 219 (563)
+.++.|-.-..+........+.|+..+|. ..+...|+. |++|..++ -+.....+..||+..-
T Consensus 358 ~t~ssd~~~~~~~ar~~~~~~vwnl~~g~---------------l~H~l~ghs-d~~yvLd~Hpfn~ri~msag~dgst~ 421 (1113)
T KOG0644|consen 358 VTRSSDLSSIVVTARNDHRLCVWNLYTGQ---------------LLHNLMGHS-DEVYVLDVHPFNPRIAMSAGYDGSTI 421 (1113)
T ss_pred EeccccccccceeeeeeeEeeeeecccch---------------hhhhhcccc-cceeeeeecCCCcHhhhhccCCCceE
Confidence 22222221111112222344556654442 112233444 77888888 3556678888999999
Q ss_pred hhHHHHH
Q 008510 220 PYDAADK 226 (563)
Q Consensus 220 ~w~~a~~ 226 (563)
+|++.+.
T Consensus 422 iwdi~eg 428 (1113)
T KOG0644|consen 422 IWDIWEG 428 (1113)
T ss_pred eeecccC
Confidence 9998754
No 125
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.31 E-value=2.4e-11 Score=121.01 Aligned_cols=162 Identities=17% Similarity=0.234 Sum_probs=115.1
Q ss_pred CCCEEEEEECCCcEEEEcC-C---------CceeEEEecCCCcEEEEEEcCCC---eEEEEeCCCcEEEEc--CCceeEE
Q 008510 2 PGVGIISASHDCTIRLWAL-T---------GQVLMEMVGHTAIVYSIDSHASG---LIVSGSEDRFAKIWK--DGVCVQS 66 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~---------g~~i~~l~gH~~~V~~v~~~p~g---~l~s~s~D~tvriWd--~~~~~~~ 66 (563)
||.+|+|||+||.|++|.+ + -++++.+.+|+-.|.++...+.| +++|+|+|+++|+|| .+..+.+
T Consensus 134 dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlt 213 (476)
T KOG0646|consen 134 DGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLT 213 (476)
T ss_pred CCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEE
Confidence 7899999999999999986 1 25788999999999999988765 899999999999999 8888889
Q ss_pred EecCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCceecee-eecc-cccccceeEEeeccCCceEEEeCCCCceeeec
Q 008510 67 IEHPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSL-ELEA-YASELSQYKLCRKKVGGLKLEDLPGLEALQIP 143 (563)
Q Consensus 67 l~h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~-~~~~-~~~~v~~~~~~~~~~~~i~~~d~~~~~~l~~~ 143 (563)
+..+..+.+|+..|-++ +..|+.+|.|.+.++......+.. ..+. +........+.+..++ ..+....
T Consensus 214 i~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~---------~~ITcLa 284 (476)
T KOG0646|consen 214 ITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENE---------SAITCLA 284 (476)
T ss_pred EecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCC---------cceeEEE
Confidence 99999999999999888 999999999999887643311000 0011 1111111112222211 1222233
Q ss_pred ccCCCeEEEEecCCCeEEEEEecccceEEE
Q 008510 144 GTNAGQTKVVREGDNGVAYSWDMKEQKWDK 173 (563)
Q Consensus 144 g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~ 173 (563)
-+.||...+.++.| +.+++||...++..+
T Consensus 285 is~DgtlLlSGd~d-g~VcvWdi~S~Q~iR 313 (476)
T KOG0646|consen 285 ISTDGTLLLSGDED-GKVCVWDIYSKQCIR 313 (476)
T ss_pred EecCccEEEeeCCC-CCEEEEecchHHHHH
Confidence 55677777766666 555688877765543
No 126
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.31 E-value=2.1e-11 Score=120.67 Aligned_cols=136 Identities=19% Similarity=0.260 Sum_probs=101.4
Q ss_pred CCCEEEEEECCCcEEEEcCC----CceeEE------------------EecCCCcEEEEEEcCCC--eEEEEeCCCcEEE
Q 008510 2 PGVGIISASHDCTIRLWALT----GQVLME------------------MVGHTAIVYSIDSHASG--LIVSGSEDRFAKI 57 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~~----g~~i~~------------------l~gH~~~V~~v~~~p~g--~l~s~s~D~tvri 57 (563)
.|+++|.|..|..|.|||++ -.+..+ ..||++.|.+++|+..- .|+|||.|.||++
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL 270 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence 37899999999999999982 112112 23799999999998764 8999999999999
Q ss_pred Ec--CCceeEEEe-cCCcEEEEEEccCC-c-EEEEeCCCcEEEEEcCCCceece-------eeecccccccceeEEeecc
Q 008510 58 WK--DGVCVQSIE-HPGCVWDAKFLENG-D-IVTACSDGVTRIWTVHSDKVADS-------LELEAYASELSQYKLCRKK 125 (563)
Q Consensus 58 Wd--~~~~~~~l~-h~~~V~~v~~~p~g-~-i~sgs~Dg~Irvwd~~~~~~~~~-------~~~~~~~~~v~~~~~~~~~ 125 (563)
|| +++|.+++. |.+.|.+++|+|.. . +++||.|++|+++|.|....... .+.-.....-....+++..
T Consensus 271 WD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~td 350 (463)
T KOG0270|consen 271 WDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTD 350 (463)
T ss_pred EEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecC
Confidence 99 999999999 77799999999964 4 89999999999999995321110 0000111112244556677
Q ss_pred CCceEEEeCCCC
Q 008510 126 VGGLKLEDLPGL 137 (563)
Q Consensus 126 ~~~i~~~d~~~~ 137 (563)
+|.++-+|++..
T Consensus 351 dG~v~~~D~R~~ 362 (463)
T KOG0270|consen 351 DGTVYYFDIRNP 362 (463)
T ss_pred CceEEeeecCCC
Confidence 788888888755
No 127
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.30 E-value=6.2e-10 Score=111.45 Aligned_cols=167 Identities=15% Similarity=0.182 Sum_probs=109.3
Q ss_pred CCCEE-EEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eE-EEEeCCCcEEEEc--CCceeEEEecCCcEEE
Q 008510 2 PGVGI-ISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LI-VSGSEDRFAKIWK--DGVCVQSIEHPGCVWD 75 (563)
Q Consensus 2 ~g~~l-~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l-~s~s~D~tvriWd--~~~~~~~l~h~~~V~~ 75 (563)
+|+.+ ++++.|+.|++||. +++.+..+..|.. +..++++|++ .+ ++++.|+++++|| +.+.+..+.+...+.+
T Consensus 41 dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~ 119 (300)
T TIGR03866 41 DGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEG 119 (300)
T ss_pred CCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcce
Confidence 35554 67788999999999 7888777766554 4678999998 44 5566789999999 5667777765556889
Q ss_pred EEEccCCc-EEEEeCCC-cEEEEEcCCCceeceeeecc----cc-cccceeE-EeeccCCceEEEeCCCCceeee-----
Q 008510 76 AKFLENGD-IVTACSDG-VTRIWTVHSDKVADSLELEA----YA-SELSQYK-LCRKKVGGLKLEDLPGLEALQI----- 142 (563)
Q Consensus 76 v~~~p~g~-i~sgs~Dg-~Irvwd~~~~~~~~~~~~~~----~~-~~v~~~~-~~~~~~~~i~~~d~~~~~~l~~----- 142 (563)
++|+|+|. +++++.++ .+.+||.++++......... .. ..-.... +....++.+.+||+.+.+.+..
T Consensus 120 ~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~ 199 (300)
T TIGR03866 120 MAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEI 199 (300)
T ss_pred EEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecc
Confidence 99999999 67776664 57788998776433211110 00 0111223 3445678999999987654321
Q ss_pred -------------cccCCCeEEEEecCCCeEEEEEecccc
Q 008510 143 -------------PGTNAGQTKVVREGDNGVAYSWDMKEQ 169 (563)
Q Consensus 143 -------------~g~~dg~~~l~~~~~~~~~~~wd~~~~ 169 (563)
..+++|...++...+...+.+||..++
T Consensus 200 ~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~ 239 (300)
T TIGR03866 200 PGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTY 239 (300)
T ss_pred cccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCC
Confidence 124556654444333344667776543
No 128
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.30 E-value=3.7e-10 Score=102.62 Aligned_cols=216 Identities=16% Similarity=0.155 Sum_probs=143.8
Q ss_pred CCCEEEEEECCCcEEEEcCC---C---ceeEEEecCCCcEEEEEEcCC----C-eEEEEe-CCCcEEEEc--CCceeEEE
Q 008510 2 PGVGIISASHDCTIRLWALT---G---QVLMEMVGHTAIVYSIDSHAS----G-LIVSGS-EDRFAKIWK--DGVCVQSI 67 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~~---g---~~i~~l~gH~~~V~~v~~~p~----g-~l~s~s-~D~tvriWd--~~~~~~~l 67 (563)
.|..+++||+|.+|++-..+ . ..-.++.-|.+.|..++|..+ | .++++| .|..|.+-| .|+.++.+
T Consensus 100 ~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~ 179 (350)
T KOG0641|consen 100 CGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHAL 179 (350)
T ss_pred ccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceee
Confidence 48899999999999998662 1 123467789999999999753 3 566654 345566666 88888888
Q ss_pred e-cCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccc-------------cccceeEEeeccCCceEEE
Q 008510 68 E-HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYA-------------SELSQYKLCRKKVGGLKLE 132 (563)
Q Consensus 68 ~-h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~-------------~~v~~~~~~~~~~~~i~~~ 132 (563)
. |++.|.++ ++-+|- +++|+.|.+||+||++-..+.....-.-+. +.......++..+....++
T Consensus 180 sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~ly 258 (350)
T KOG0641|consen 180 SGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLY 258 (350)
T ss_pred cCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEE
Confidence 8 99988876 455666 999999999999999876544322111111 1122445567788899999
Q ss_pred eCCCCceeeec-ccCCCeEEEEecCCCeE--EEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCe
Q 008510 133 DLPGLEALQIP-GTNAGQTKVVREGDNGV--AYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEP 208 (563)
Q Consensus 133 d~~~~~~l~~~-g~~dg~~~l~~~~~~~~--~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~ 208 (563)
|++++..++.. .|......+-+++.-.. .+.||+..+.-+..|++... -.....+.+.|.++.+.| +..-.
T Consensus 259 dirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~e-----l~~~vv~ehkdk~i~~rwh~~d~s 333 (350)
T KOG0641|consen 259 DIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHE-----LPIMVVAEHKDKAIQCRWHPQDFS 333 (350)
T ss_pred EeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhc-----CceEEEEeccCceEEEEecCccce
Confidence 99999888776 44444444444443222 45666655444444443321 223455566688888888 54445
Q ss_pred eeeecCCCCCChhHH
Q 008510 209 TRKLPYNRSDNPYDA 223 (563)
Q Consensus 209 ~~~~~~n~~~~~w~~ 223 (563)
..+.+.|++...|..
T Consensus 334 fisssadkt~tlwa~ 348 (350)
T KOG0641|consen 334 FISSSADKTATLWAL 348 (350)
T ss_pred eeeccCcceEEEecc
Confidence 777888888888753
No 129
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=2.4e-10 Score=109.03 Aligned_cols=164 Identities=19% Similarity=0.217 Sum_probs=113.2
Q ss_pred CEEEEEEC--CCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEecCCcEEEEE
Q 008510 4 VGIISASH--DCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIEHPGCVWDAK 77 (563)
Q Consensus 4 ~~l~s~s~--DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~h~~~V~~v~ 77 (563)
..++.+|+ |.+||.-++ +.+.++.+.||...|.+++.+|-+ .++|+|.|++||+|| ..+|...+...+ --.++
T Consensus 69 ~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~-~pi~A 147 (311)
T KOG1446|consen 69 NTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSG-RPIAA 147 (311)
T ss_pred ceEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCC-Cccee
Confidence 34555666 899999999 899999999999999999999988 999999999999999 577776665332 33468
Q ss_pred EccCCc-EEEEeCCCcEEEEEcCCCceec--eeeec--------cccccc-ceeEEeeccCCceEEEeCCCCce------
Q 008510 78 FLENGD-IVTACSDGVTRIWTVHSDKVAD--SLELE--------AYASEL-SQYKLCRKKVGGLKLEDLPGLEA------ 139 (563)
Q Consensus 78 ~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~--~~~~~--------~~~~~v-~~~~~~~~~~~~i~~~d~~~~~~------ 139 (563)
|.|.|. +|+++....|++||+|+-..-+ ...+. ..+-+. ....+.....+.+.+.|-..+..
T Consensus 148 fDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~ 227 (311)
T KOG1446|consen 148 FDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSG 227 (311)
T ss_pred ECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEee
Confidence 999999 6777776799999999753211 11111 111111 12333334445555555433322
Q ss_pred --------eeecccCCCeEEEEecCCCeEEEEEecccc
Q 008510 140 --------LQIPGTNAGQTKVVREGDNGVAYSWDMKEQ 169 (563)
Q Consensus 140 --------l~~~g~~dg~~~l~~~~~~~~~~~wd~~~~ 169 (563)
+....++||++.+....| +.+++|+..++
T Consensus 228 ~~~~~~~~~~a~ftPds~Fvl~gs~d-g~i~vw~~~tg 264 (311)
T KOG1446|consen 228 YPNAGNLPLSATFTPDSKFVLSGSDD-GTIHVWNLETG 264 (311)
T ss_pred ccCCCCcceeEEECCCCcEEEEecCC-CcEEEEEcCCC
Confidence 233467888877776665 66778887665
No 130
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.28 E-value=1.1e-10 Score=127.18 Aligned_cols=100 Identities=22% Similarity=0.354 Sum_probs=92.2
Q ss_pred CCCEEEEEECCCcEEEEcCC--------C-----------ceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--
Q 008510 2 PGVGIISASHDCTIRLWALT--------G-----------QVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-- 59 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~~--------g-----------~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd-- 59 (563)
||++||+||.|+.|.+|... | +++..+.||.+.|.+++|+|++ +++|+|-|++|.||+
T Consensus 80 dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~ 159 (942)
T KOG0973|consen 80 DGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAK 159 (942)
T ss_pred CCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccc
Confidence 79999999999999999873 1 3778899999999999999999 999999999999999
Q ss_pred CCceeEEEe-cCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCC
Q 008510 60 DGVCVQSIE-HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSD 101 (563)
Q Consensus 60 ~~~~~~~l~-h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~ 101 (563)
+.+++..+. |...|-.+.|.|-|+ |++-+.|++|+||.+.+.
T Consensus 160 tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw 203 (942)
T KOG0973|consen 160 TFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDW 203 (942)
T ss_pred cceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccc
Confidence 788888888 999999999999999 999999999999997653
No 131
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.27 E-value=4.9e-10 Score=115.71 Aligned_cols=81 Identities=22% Similarity=0.356 Sum_probs=63.4
Q ss_pred CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc-CCceeEEEecCCcEEEEEE
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-DGVCVQSIEHPGCVWDAKF 78 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd-~~~~~~~l~h~~~V~~v~~ 78 (563)
||..++.+. |..+.+||. +|..+.+++||.+.|+||+|+.+| .|+||+.|..|.+|+ ..+-+-.+.|.+.|.|+.|
T Consensus 23 DGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsF 101 (1081)
T KOG1538|consen 23 DGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSF 101 (1081)
T ss_pred CCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceeeeccCCeeeEeec
Confidence 566666665 446899999 899999999999999999999999 999999999999999 4333333446666666666
Q ss_pred ccCCc
Q 008510 79 LENGD 83 (563)
Q Consensus 79 ~p~g~ 83 (563)
+|-..
T Consensus 102 NP~~h 106 (1081)
T KOG1538|consen 102 NPITH 106 (1081)
T ss_pred CchHH
Confidence 55444
No 132
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.27 E-value=6.9e-11 Score=114.80 Aligned_cols=134 Identities=23% Similarity=0.367 Sum_probs=103.9
Q ss_pred CEEEEEECCCcEEEEcCC-----------------CceeEEEecCCCcEEEEEEcCC--CeEEEEeCCCcEEEEc--CCc
Q 008510 4 VGIISASHDCTIRLWALT-----------------GQVLMEMVGHTAIVYSIDSHAS--GLIVSGSEDRFAKIWK--DGV 62 (563)
Q Consensus 4 ~~l~s~s~DgtIrlWd~~-----------------g~~i~~l~gH~~~V~~v~~~p~--g~l~s~s~D~tvriWd--~~~ 62 (563)
.+.++-+..|.|.||++. .+++.++.+|...=|.++|+|- |.++||.--+.|++|. ++.
T Consensus 166 ~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~ 245 (440)
T KOG0302|consen 166 VLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGS 245 (440)
T ss_pred ceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccccceEeeeeccCc
Confidence 467888889999999972 1577889999998999999994 4788887788899999 433
Q ss_pred ee---EEEe-cCCcEEEEEEccCCc--EEEEeCCCcEEEEEcCCCceeceeeecccccccc--------eeEEeeccCCc
Q 008510 63 CV---QSIE-HPGCVWDAKFLENGD--IVTACSDGVTRIWTVHSDKVADSLELEAYASELS--------QYKLCRKKVGG 128 (563)
Q Consensus 63 ~~---~~l~-h~~~V~~v~~~p~g~--i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~--------~~~~~~~~~~~ 128 (563)
-. +.+. |+.+|-.++|+|..+ |++||-||+|||||+|++..-.....++|...|+ .+..++..+|.
T Consensus 246 W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt 325 (440)
T KOG0302|consen 246 WKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGT 325 (440)
T ss_pred eeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCce
Confidence 21 1222 999999999999755 8999999999999999985444344466665543 34567788899
Q ss_pred eEEEeCCCC
Q 008510 129 LKLEDLPGL 137 (563)
Q Consensus 129 i~~~d~~~~ 137 (563)
+++||++..
T Consensus 326 ~~iwDLR~~ 334 (440)
T KOG0302|consen 326 LSIWDLRQF 334 (440)
T ss_pred EEEEEhhhc
Confidence 999999744
No 133
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.27 E-value=4.9e-10 Score=112.18 Aligned_cols=168 Identities=15% Similarity=0.120 Sum_probs=114.2
Q ss_pred CCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eE-EEEeCCCcEEEEc--CCceeEEEecCCcEEEEE
Q 008510 3 GVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LI-VSGSEDRFAKIWK--DGVCVQSIEHPGCVWDAK 77 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l-~s~s~D~tvriWd--~~~~~~~l~h~~~V~~v~ 77 (563)
++.|+|++.|++|++||. +++++.++.+|.. +.+++|+|+| .+ ++++.|+.|++|| +++.+..+.....+..++
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~ 79 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFA 79 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEE
Confidence 467999999999999999 8889999887655 6789999998 54 6778899999999 667777666434467889
Q ss_pred EccCCc-EE-EEeCCCcEEEEEcCCCceeceeeecc----ccccc-ceeEEeeccC-CceEEEeCCCCceee--------
Q 008510 78 FLENGD-IV-TACSDGVTRIWTVHSDKVADSLELEA----YASEL-SQYKLCRKKV-GGLKLEDLPGLEALQ-------- 141 (563)
Q Consensus 78 ~~p~g~-i~-sgs~Dg~Irvwd~~~~~~~~~~~~~~----~~~~v-~~~~~~~~~~-~~i~~~d~~~~~~l~-------- 141 (563)
|+|+|+ ++ +++.|+.|++||+++.+......... ..-.. ....+....+ ..+..||..+.....
T Consensus 80 ~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 159 (300)
T TIGR03866 80 LHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRP 159 (300)
T ss_pred ECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCc
Confidence 999998 54 45568999999999876433222110 00011 1222233333 346667876554432
Q ss_pred --ecccCCCeEEEEecCCCeEEEEEecccceE
Q 008510 142 --IPGTNAGQTKVVREGDNGVAYSWDMKEQKW 171 (563)
Q Consensus 142 --~~g~~dg~~~l~~~~~~~~~~~wd~~~~~w 171 (563)
...+++|...++....++.+++||..++..
T Consensus 160 ~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~ 191 (300)
T TIGR03866 160 RFAEFTADGKELWVSSEIGGTVSVIDVATRKV 191 (300)
T ss_pred cEEEECCCCCEEEEEcCCCCEEEEEEcCccee
Confidence 124567777666655456788899876543
No 134
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.26 E-value=5.5e-11 Score=122.41 Aligned_cols=207 Identities=18% Similarity=0.188 Sum_probs=135.2
Q ss_pred CEEEEEECCCcEEEEcCC-C--c----eeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEE---EecC
Q 008510 4 VGIISASHDCTIRLWALT-G--Q----VLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQS---IEHP 70 (563)
Q Consensus 4 ~~l~s~s~DgtIrlWd~~-g--~----~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~---l~h~ 70 (563)
..|+.+..||.|.++|.. . + .++....|...|.++.|.|.. .|++++.|.++|+|| ..++... +.|.
T Consensus 65 HiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~ 144 (720)
T KOG0321|consen 65 HILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHT 144 (720)
T ss_pred ceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccc
Confidence 568899999999999982 1 1 245667899999999999944 899999999999999 5555544 3499
Q ss_pred CcEEEEEEccCCc--EEEEeCCCcEEEEEcCCCcee------------------ceeee-------cccccccce-----
Q 008510 71 GCVWDAKFLENGD--IVTACSDGVTRIWTVHSDKVA------------------DSLEL-------EAYASELSQ----- 118 (563)
Q Consensus 71 ~~V~~v~~~p~g~--i~sgs~Dg~Irvwd~~~~~~~------------------~~~~~-------~~~~~~v~~----- 118 (563)
+.|.+++|.|... +++|+.||.|.|||.+-...- +...+ .+....+..
T Consensus 145 ~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv 224 (720)
T KOG0321|consen 145 GSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVV 224 (720)
T ss_pred cccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEE
Confidence 9999999999765 899999999999998743210 00000 000011111
Q ss_pred ------eEE-eeccCCceEEEeCCCCceeee---------ccc-------------CCCeEEEEecCCCeEEEEEecccc
Q 008510 119 ------YKL-CRKKVGGLKLEDLPGLEALQI---------PGT-------------NAGQTKVVREGDNGVAYSWDMKEQ 169 (563)
Q Consensus 119 ------~~~-~~~~~~~i~~~d~~~~~~l~~---------~g~-------------~dg~~~l~~~~~~~~~~~wd~~~~ 169 (563)
..+ ++..|+.|++||++....... ..+ ..|.+.+..+.| ..+|.|++..-
T Consensus 225 ~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD-~sIy~ynm~s~ 303 (720)
T KOG0321|consen 225 LFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTD-NSIYFYNMRSL 303 (720)
T ss_pred EEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecC-CcEEEEecccc
Confidence 112 344589999999976522111 111 223444444443 55677776443
Q ss_pred eEEEeCcEeeCCCCCCCceeecCcccC--cEEEEEcCCCCeeeeecCCCCCChhHHH
Q 008510 170 KWDKLGEVVDGPDDGMNRPILDGIQYD--YVFDVDIGDGEPTRKLPYNRSDNPYDAA 224 (563)
Q Consensus 170 ~w~~~g~v~~~~~~~~~~~~~~g~~~d--~v~~vd~~dg~~~~~~~~n~~~~~w~~a 224 (563)
.-. -+..|.|+..+ ||-+.--+||..++++..|...-+|.+.
T Consensus 304 s~s-------------P~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs 347 (720)
T KOG0321|consen 304 SIS-------------PVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVS 347 (720)
T ss_pred CcC-------------chhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeec
Confidence 211 33445555433 3334444888889999988888888774
No 135
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.26 E-value=1.1e-10 Score=110.03 Aligned_cols=196 Identities=16% Similarity=0.186 Sum_probs=127.2
Q ss_pred CCCEEEEEECCCcEEEEcC-CC------------cee---EEEecCCCcEEEEEEcCC--CeEEEEeCCCcEEEEc--CC
Q 008510 2 PGVGIISASHDCTIRLWAL-TG------------QVL---MEMVGHTAIVYSIDSHAS--GLIVSGSEDRFAKIWK--DG 61 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g------------~~i---~~l~gH~~~V~~v~~~p~--g~l~s~s~D~tvriWd--~~ 61 (563)
.|++++||+.||.|-+||+ .. .|+ ..-.+|...|.++-|-|- |.|.|+|.|.++|||| +-
T Consensus 55 egrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTl 134 (397)
T KOG4283|consen 55 EGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTL 134 (397)
T ss_pred cceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccc
Confidence 4789999999999999998 21 121 012478889999999984 4999999999999999 66
Q ss_pred ceeEEEecCCcEEEEEEccCC--c--EEEEeCCCcEEEEEcCCCceeceeeecccccccceeEEeeccCCceEEEeCCCC
Q 008510 62 VCVQSIEHPGCVWDAKFLENG--D--IVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLCRKKVGGLKLEDLPGL 137 (563)
Q Consensus 62 ~~~~~l~h~~~V~~v~~~p~g--~--i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~d~~~~ 137 (563)
+....|..++.|++-+++|-. . ||+|..|-.||+.|+.+|... ..+.+|.+.|-.+. =-|..
T Consensus 135 Q~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~s--H~LsGHr~~vlaV~------------Wsp~~ 200 (397)
T KOG4283|consen 135 QEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFS--HTLSGHRDGVLAVE------------WSPSS 200 (397)
T ss_pred eeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcce--eeeccccCceEEEE------------eccCc
Confidence 777788899999999999943 2 788999999999999999733 34444444332211 11222
Q ss_pred ceeeecccCCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCcee--ecCcccCcEEEEEc-CCCCeeeeecC
Q 008510 138 EALQIPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPI--LDGIQYDYVFDVDI-GDGEPTRKLPY 214 (563)
Q Consensus 138 ~~l~~~g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~--~~g~~~d~v~~vd~-~dg~~~~~~~~ 214 (563)
+.+..+|+.||.+++|+-..- .+.+. +.+-... ..... -.-.+|+.|+...+ .||...++..-
T Consensus 201 e~vLatgsaDg~irlWDiRra---------sgcf~----~lD~hn~-k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gt 266 (397)
T KOG4283|consen 201 EWVLATGSADGAIRLWDIRRA---------SGCFR----VLDQHNT-KRPPILKTNTAHYGKVNGLAWTSDARYLASCGT 266 (397)
T ss_pred eeEEEecCCCceEEEEEeecc---------cceeE----EeecccC-ccCccccccccccceeeeeeecccchhhhhccC
Confidence 233333333333333322110 01111 1110000 00001 11234677999999 89999999999
Q ss_pred CCCCChhHHHH
Q 008510 215 NRSDNPYDAAD 225 (563)
Q Consensus 215 n~~~~~w~~a~ 225 (563)
|..++.|+-..
T Consensus 267 d~r~r~wn~~~ 277 (397)
T KOG4283|consen 267 DDRIRVWNMES 277 (397)
T ss_pred ccceEEeeccc
Confidence 99999998753
No 136
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.26 E-value=2.7e-11 Score=121.31 Aligned_cols=133 Identities=17% Similarity=0.258 Sum_probs=103.6
Q ss_pred CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEecCCcEEEEE
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIEHPGCVWDAK 77 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~h~~~V~~v~ 77 (563)
|.+..++|..||.|+|||+ +...++.|.||++.+.|+.++++| .+.|||-|.+||.|| .+..++.......|.++.
T Consensus 520 DakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg 599 (705)
T KOG0639|consen 520 DAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLG 599 (705)
T ss_pred ccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhheecc
Confidence 4577889999999999999 888999999999999999999999 999999999999999 666555555566899999
Q ss_pred EccCCc-EEEEeCCCcEEEEEcCCCceeceeeeccccccc--------ceeEEeeccCCceEEEeCCCC
Q 008510 78 FLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASEL--------SQYKLCRKKVGGLKLEDLPGL 137 (563)
Q Consensus 78 ~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v--------~~~~~~~~~~~~i~~~d~~~~ 137 (563)
++|+++ ++.|...+.+.|......... .+..++.-| ....++...|+-+..|..|-+
T Consensus 600 ~cP~~dWlavGMens~vevlh~skp~ky---qlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyG 665 (705)
T KOG0639|consen 600 YCPTGDWLAVGMENSNVEVLHTSKPEKY---QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG 665 (705)
T ss_pred cCCCccceeeecccCcEEEEecCCccce---eecccccEEEEEEecccCceeeecCchhhhhhccCccc
Confidence 999999 999999999988887655422 222222222 223334455666666766644
No 137
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.25 E-value=1.5e-10 Score=117.85 Aligned_cols=100 Identities=26% Similarity=0.491 Sum_probs=85.3
Q ss_pred CEEEEEECCCcEEEEcC-C--------CceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--------CC----
Q 008510 4 VGIISASHDCTIRLWAL-T--------GQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--------DG---- 61 (563)
Q Consensus 4 ~~l~s~s~DgtIrlWd~-~--------g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--------~~---- 61 (563)
..|++|+.||++++|++ . -+++.+|.+|.++|.|+++.+++ .+.|||-||+|+.|+ +.
T Consensus 307 p~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~ 386 (577)
T KOG0642|consen 307 PVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPS 386 (577)
T ss_pred CeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcc
Confidence 46899999999999998 1 25789999999999999999999 999999999999994 11
Q ss_pred ceeEEEe-cCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCce
Q 008510 62 VCVQSIE-HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKV 103 (563)
Q Consensus 62 ~~~~~l~-h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~ 103 (563)
....++. |.+.||.+++++..+ +++++.||++|.|.......
T Consensus 387 vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~ 430 (577)
T KOG0642|consen 387 VLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP 430 (577)
T ss_pred hhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc
Confidence 1223444 999999999999776 99999999999999877653
No 138
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.25 E-value=2.8e-10 Score=107.73 Aligned_cols=98 Identities=23% Similarity=0.372 Sum_probs=81.1
Q ss_pred CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC---eEEEEeCCCcEEEEc--CCceeEEEecCCcEEE
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG---LIVSGSEDRFAKIWK--DGVCVQSIEHPGCVWD 75 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g---~l~s~s~D~tvriWd--~~~~~~~l~h~~~V~~ 75 (563)
||..+++|+.|+.+++||+ ++ .+..+..|.++|.++.|.+.. .++|||+|+|+|.|| ....+.++..|..|++
T Consensus 83 dgskVf~g~~Dk~~k~wDL~S~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa 161 (347)
T KOG0647|consen 83 DGSKVFSGGCDKQAKLWDLASG-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYA 161 (347)
T ss_pred CCceEEeeccCCceEEEEccCC-CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeee
Confidence 6788999999999999999 66 556788899999999998764 699999999999999 6677888888888888
Q ss_pred EEEccCCcEEEEeCCCcEEEEEcCCC
Q 008510 76 AKFLENGDIVTACSDGVTRIWTVHSD 101 (563)
Q Consensus 76 v~~~p~g~i~sgs~Dg~Irvwd~~~~ 101 (563)
+..... .++.+..+..|.+|+++.+
T Consensus 162 ~Dv~~p-m~vVata~r~i~vynL~n~ 186 (347)
T KOG0647|consen 162 ADVLYP-MAVVATAERHIAVYNLENP 186 (347)
T ss_pred hhccCc-eeEEEecCCcEEEEEcCCC
Confidence 766422 2677778888888888654
No 139
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.23 E-value=2.1e-10 Score=104.12 Aligned_cols=100 Identities=24% Similarity=0.412 Sum_probs=87.8
Q ss_pred CCCEEEEEECCCcEEEEcC-CCceeEEEec--C-----CCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-c
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVLMEMVG--H-----TAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-H 69 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~g--H-----~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h 69 (563)
+|-.|++||.|.|||.||+ -..|+.++.. | .+.|.+|++.|.| .+++|-+|.++.+|| .++.+|.+. |
T Consensus 193 n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~ph 272 (350)
T KOG0641|consen 193 NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPH 272 (350)
T ss_pred cCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCC
Confidence 4668999999999999999 5677777642 2 3679999999999 899999999999999 778899988 9
Q ss_pred CCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCC
Q 008510 70 PGCVWDAKFLENGD-IVTACSDGVTRIWTVHSD 101 (563)
Q Consensus 70 ~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~ 101 (563)
...|.||.|+|... +++|+.|..|++-|+...
T Consensus 273 sadir~vrfsp~a~yllt~syd~~ikltdlqgd 305 (350)
T KOG0641|consen 273 SADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGD 305 (350)
T ss_pred ccceeEEEeCCCceEEEEecccceEEEeecccc
Confidence 99999999999887 999999999999998754
No 140
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.23 E-value=1.2e-10 Score=110.89 Aligned_cols=189 Identities=16% Similarity=0.197 Sum_probs=125.3
Q ss_pred eEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--C-----CceeEEEecCCcEEEEEEccCCc--EEEEeCCCcEE
Q 008510 25 LMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--D-----GVCVQSIEHPGCVWDAKFLENGD--IVTACSDGVTR 94 (563)
Q Consensus 25 i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~-----~~~~~~l~h~~~V~~v~~~p~g~--i~sgs~Dg~Ir 94 (563)
+.+++||...|++++|+.|| .|+|++.||+||+|+ + .+|++.--.-+.-+.|.|.||-+ +++.-...+++
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence 45689999999999999999 999999999999999 1 23332211223567889999987 45566677899
Q ss_pred EEEcCCCc---ee----ceeeec---cccc--------ccceeEEeeccCCceEEEeCCCCceeeec-----------cc
Q 008510 95 IWTVHSDK---VA----DSLELE---AYAS--------ELSQYKLCRKKVGGLKLEDLPGLEALQIP-----------GT 145 (563)
Q Consensus 95 vwd~~~~~---~~----~~~~~~---~~~~--------~v~~~~~~~~~~~~i~~~d~~~~~~l~~~-----------g~ 145 (563)
+|.....+ .. +...++ .+.- ....++.+++.+.+|.+|++.++ .++.. -+
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkGq-~L~~idtnq~~n~~aavS 237 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKGQ-LLQSIDTNQSSNYDAAVS 237 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecCCc-eeeeeccccccccceeeC
Confidence 99875332 10 011010 0110 12356677888999999999954 33322 45
Q ss_pred CCCeEEEEecCCCeEEEEEecccceEEEe----CcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeeeecCCCCCCh
Q 008510 146 NAGQTKVVREGDNGVAYSWDMKEQKWDKL----GEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRKLPYNRSDNP 220 (563)
Q Consensus 146 ~dg~~~l~~~~~~~~~~~wd~~~~~w~~~----g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~~~~~ 220 (563)
++|.+..+.. +-.....|+.+ |++-.. .+...+.||. .-|....| ++...+.+.+-|++.++
T Consensus 238 P~GRFia~~g--------FTpDVkVwE~~f~kdG~fqev----~rvf~LkGH~-saV~~~aFsn~S~r~vtvSkDG~wri 304 (420)
T KOG2096|consen 238 PDGRFIAVSG--------FTPDVKVWEPIFTKDGTFQEV----KRVFSLKGHQ-SAVLAAAFSNSSTRAVTVSKDGKWRI 304 (420)
T ss_pred CCCcEEEEec--------CCCCceEEEEEeccCcchhhh----hhhheeccch-hheeeeeeCCCcceeEEEecCCcEEE
Confidence 6666655443 22233445443 322221 1445578887 66888899 88889999999999999
Q ss_pred hHHHHHH
Q 008510 221 YDAADKW 227 (563)
Q Consensus 221 w~~a~~f 227 (563)
|+..=+|
T Consensus 305 wdtdVrY 311 (420)
T KOG2096|consen 305 WDTDVRY 311 (420)
T ss_pred eeccceE
Confidence 9986544
No 141
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.22 E-value=2.1e-10 Score=109.19 Aligned_cols=99 Identities=31% Similarity=0.491 Sum_probs=86.5
Q ss_pred CCEEEEEECCCcEEEEcCCCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc-----CCce---eE--EEe-cC
Q 008510 3 GVGIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-----DGVC---VQ--SIE-HP 70 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd-----~~~~---~~--~l~-h~ 70 (563)
+.+|+|||.|.+|.+|++.|+.+.++......-+..+++|+| .+++++.---|++|. +|.. .+ .+. |.
T Consensus 199 ~k~imsas~dt~i~lw~lkGq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~ 278 (420)
T KOG2096|consen 199 AKYIMSASLDTKICLWDLKGQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQ 278 (420)
T ss_pred ceEEEEecCCCcEEEEecCCceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccch
Confidence 578999999999999999999999998888888999999999 888999999999998 3321 22 333 89
Q ss_pred CcEEEEEEccCCc-EEEEeCCCcEEEEEcCCC
Q 008510 71 GCVWDAKFLENGD-IVTACSDGVTRIWTVHSD 101 (563)
Q Consensus 71 ~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~ 101 (563)
..|...+|+++.+ +++.+.||++|+||.+-.
T Consensus 279 saV~~~aFsn~S~r~vtvSkDG~wriwdtdVr 310 (420)
T KOG2096|consen 279 SAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVR 310 (420)
T ss_pred hheeeeeeCCCcceeEEEecCCcEEEeeccce
Confidence 9999999999988 999999999999998754
No 142
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.21 E-value=5.7e-10 Score=106.27 Aligned_cols=132 Identities=19% Similarity=0.247 Sum_probs=100.1
Q ss_pred EEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEecCCcEEEEEEcc
Q 008510 5 GIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIEHPGCVWDAKFLE 80 (563)
Q Consensus 5 ~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~h~~~V~~v~~~p 80 (563)
.|++|+.||.|.+|+. .-++++++++|.+.|+.++++|.| ...|.|.|+.+|.|| +|+.-..+.....-..|.|+|
T Consensus 99 hLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~ 178 (362)
T KOG0294|consen 99 HLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSP 178 (362)
T ss_pred heeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcC
Confidence 7899999999999999 889999999999999999999999 778899999999999 776655555344445599999
Q ss_pred CCc-EEEEeCCCcEEEEEcCCCceeceeeec----ccccccceeEEeeccCCceEEEeCCCC
Q 008510 81 NGD-IVTACSDGVTRIWTVHSDKVADSLELE----AYASELSQYKLCRKKVGGLKLEDLPGL 137 (563)
Q Consensus 81 ~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~i~~~d~~~~ 137 (563)
.|+ ++.++.+ .|-+|.+.+.......+.. .....-....+.+..++.|++||....
T Consensus 179 ~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~ 239 (362)
T KOG0294|consen 179 QGDHFVVSGRN-KIDIYQLDNASVFREIENPKRILCATFLDGSELLVGGDNEWISLKDTDSD 239 (362)
T ss_pred CCCEEEEEecc-EEEEEecccHhHhhhhhccccceeeeecCCceEEEecCCceEEEeccCCC
Confidence 999 7776654 6889988776532211111 111112345567777889999998754
No 143
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.19 E-value=4.9e-10 Score=120.00 Aligned_cols=102 Identities=19% Similarity=0.345 Sum_probs=88.4
Q ss_pred CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEEE
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDA 76 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~v 76 (563)
.+.+|++|+.+++|.+|.. +++.-..+...+-++.+++|+.+| .++.||.|-.|++-+ +......+. |.++|.++
T Consensus 65 ~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l 144 (933)
T KOG1274|consen 65 YSNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQL 144 (933)
T ss_pred cccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeee
Confidence 3568999999999999999 666555566667889999999999 999999999999999 555555666 99999999
Q ss_pred EEccCCc-EEEEeCCCcEEEEEcCCCce
Q 008510 77 KFLENGD-IVTACSDGVTRIWTVHSDKV 103 (563)
Q Consensus 77 ~~~p~g~-i~sgs~Dg~Irvwd~~~~~~ 103 (563)
.|+|+|. +|+.+-||.|++||+.++..
T Consensus 145 ~~~p~~~fLAvss~dG~v~iw~~~~~~~ 172 (933)
T KOG1274|consen 145 SYDPKGNFLAVSSCDGKVQIWDLQDGIL 172 (933)
T ss_pred eEcCCCCEEEEEecCceEEEEEcccchh
Confidence 9999999 89999999999999998863
No 144
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.16 E-value=7.8e-11 Score=128.92 Aligned_cols=204 Identities=19% Similarity=0.231 Sum_probs=137.2
Q ss_pred EEEEEECCCcEEEEcC-C---C---ceeEEEecCCCcEEEEEEcCCC--eEEEEeCCCcEEEEc-CC-ceeEEE---ecC
Q 008510 5 GIISASHDCTIRLWAL-T---G---QVLMEMVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK-DG-VCVQSI---EHP 70 (563)
Q Consensus 5 ~l~s~s~DgtIrlWd~-~---g---~~i~~l~gH~~~V~~v~~~p~g--~l~s~s~D~tvriWd-~~-~~~~~l---~h~ 70 (563)
.|+.|..||.|-+||. . + ..+.++..|++.|..+.|++.+ .++||+.||.|.||| .. +.-.+. ..+
T Consensus 82 lIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~ 161 (1049)
T KOG0307|consen 82 LIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPP 161 (1049)
T ss_pred eeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCc
Confidence 5899999999999998 2 2 3567888999999999999975 899999999999999 22 211112 255
Q ss_pred CcEEEEEEccCCc--EEEEeCCCcEEEEEcCCCceeceee----------ecccccccceeEEeeccC--CceEEEeCCC
Q 008510 71 GCVWDAKFLENGD--IVTACSDGVTRIWTVHSDKVADSLE----------LEAYASELSQYKLCRKKV--GGLKLEDLPG 136 (563)
Q Consensus 71 ~~V~~v~~~p~g~--i~sgs~Dg~Irvwd~~~~~~~~~~~----------~~~~~~~v~~~~~~~~~~--~~i~~~d~~~ 136 (563)
..|.+++|+..-. +++++.+|.+.|||+|..+..-... +.=|-+.-.+...+...+ -.|.+||++-
T Consensus 162 ~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~ 241 (1049)
T KOG0307|consen 162 SEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRF 241 (1049)
T ss_pred ccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccc
Confidence 6899999987533 7999999999999999875321111 111111122333333333 5899999864
Q ss_pred Cceeee--cccCCCeEE----------EEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-
Q 008510 137 LEALQI--PGTNAGQTK----------VVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI- 203 (563)
Q Consensus 137 ~~~l~~--~g~~dg~~~----------l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~- 203 (563)
...-.. .+|.-|.+. ++.++.++.+++|+..++ ++++.-. ..-+++|+|.|
T Consensus 242 assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tg------Evl~~~p----------~~~nW~fdv~w~ 305 (1049)
T KOG0307|consen 242 ASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTG------EVLGELP----------AQGNWCFDVQWC 305 (1049)
T ss_pred cCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCc------eEeeecC----------CCCcceeeeeec
Confidence 432211 255555443 334444466778887664 5555321 12388999999
Q ss_pred -CCCCeeeeecCCCCCChhHHH
Q 008510 204 -GDGEPTRKLPYNRSDNPYDAA 224 (563)
Q Consensus 204 -~dg~~~~~~~~n~~~~~w~~a 224 (563)
.+-..+...++|+.+.+|.+.
T Consensus 306 pr~P~~~A~asfdgkI~I~sl~ 327 (1049)
T KOG0307|consen 306 PRNPSVMAAASFDGKISIYSLQ 327 (1049)
T ss_pred CCCcchhhhheeccceeeeeee
Confidence 344457888899999888864
No 145
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.15 E-value=3.3e-09 Score=97.69 Aligned_cols=139 Identities=14% Similarity=0.155 Sum_probs=89.9
Q ss_pred CCEEEEEECCCcEEEEcC----CC-------ceeEEEecCCCcEEEEEEcCCCeEEEEeCCCcEEEEc------CCceeE
Q 008510 3 GVGIISASHDCTIRLWAL----TG-------QVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWK------DGVCVQ 65 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~----~g-------~~i~~l~gH~~~V~~v~~~p~g~l~s~s~D~tvriWd------~~~~~~ 65 (563)
+++|+.|+++|+|-+.++ ++ ..+-...+|.++||.++|..+ .+++|+ ||.|+-|. +..+..
T Consensus 22 ~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~-~Lls~g-dG~V~gw~W~E~~es~~~K~ 99 (325)
T KOG0649|consen 22 KQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDD-FLLSGG-DGLVYGWEWNEEEESLATKR 99 (325)
T ss_pred ceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehh-heeecc-CceEEEeeehhhhhhccchh
Confidence 578888999999988876 11 244556789999999888844 666665 58888776 111111
Q ss_pred EEe-----cC-----CcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCceece-----eeeccccc-ccceeEEeeccCCc
Q 008510 66 SIE-----HP-----GCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADS-----LELEAYAS-ELSQYKLCRKKVGG 128 (563)
Q Consensus 66 ~l~-----h~-----~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~-----~~~~~~~~-~v~~~~~~~~~~~~ 128 (563)
.+. |. -.|.++...|... +..++.|+.++-||+.+|+.... .-++.... .-+..++++.+||+
T Consensus 100 lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGt 179 (325)
T KOG0649|consen 100 LWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGT 179 (325)
T ss_pred hhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCcc
Confidence 111 22 1477777777555 66666788888888888875432 22332222 34466778888888
Q ss_pred eEEEeCCCCceeeec
Q 008510 129 LKLEDLPGLEALQIP 143 (563)
Q Consensus 129 i~~~d~~~~~~l~~~ 143 (563)
+++||.++.......
T Consensus 180 vRvWd~kt~k~v~~i 194 (325)
T KOG0649|consen 180 VRVWDTKTQKHVSMI 194 (325)
T ss_pred EEEEeccccceeEEe
Confidence 888888777655543
No 146
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.13 E-value=4.2e-10 Score=105.93 Aligned_cols=98 Identities=26% Similarity=0.470 Sum_probs=82.9
Q ss_pred CCCEEEEEECCCcEEEEcC-CCceeEEE-ecCCCcEEEEEEcCCC--eEEEEeCCCcEEEEc---CCceeEEEe-cCCcE
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVLMEM-VGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK---DGVCVQSIE-HPGCV 73 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l-~gH~~~V~~v~~~p~g--~l~s~s~D~tvriWd---~~~~~~~l~-h~~~V 73 (563)
+|+.+++.+ |++++-||+ +-.+...+ ..|...|.++.|+|+. .++|||.||.||||| +...++++. |...|
T Consensus 183 dgnqv~tt~-d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWv 261 (370)
T KOG1007|consen 183 DGNQVATTS-DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWV 261 (370)
T ss_pred ccceEEEeC-CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEE
Confidence 467777764 899999999 55444444 4698999999999986 899999999999999 567788887 99999
Q ss_pred EEEEEccCCc--EEEEeCCCcEEEEEcCC
Q 008510 74 WDAKFLENGD--IVTACSDGVTRIWTVHS 100 (563)
Q Consensus 74 ~~v~~~p~g~--i~sgs~Dg~Irvwd~~~ 100 (563)
|+|.|+|.-+ |++||+|..|.+|-..+
T Consensus 262 W~VRfn~~hdqLiLs~~SDs~V~Lsca~s 290 (370)
T KOG1007|consen 262 WAVRFNPEHDQLILSGGSDSAVNLSCASS 290 (370)
T ss_pred EEEEecCccceEEEecCCCceeEEEeccc
Confidence 9999999766 89999999999998654
No 147
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.07 E-value=6.3e-09 Score=104.50 Aligned_cols=163 Identities=15% Similarity=0.179 Sum_probs=123.2
Q ss_pred CEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEecC-C-cEEEEE
Q 008510 4 VGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIEHP-G-CVWDAK 77 (563)
Q Consensus 4 ~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~h~-~-~V~~v~ 77 (563)
.++++||..+.|+|||+ ...+.+.+++|++.|.+|.++-.. ++++++..|-|.|.. ++....+|.|+ + .|+-+.
T Consensus 92 ~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ 171 (673)
T KOG4378|consen 92 LYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLR 171 (673)
T ss_pred eeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEee
Confidence 57899999999999999 667888899999999999998776 999999999999999 66666778866 3 788999
Q ss_pred EccCCc--EEEEeCCCcEEEEEcCCCceeceeeeccccc---------ccceeEEeeccCCceEEEeCCCCcee------
Q 008510 78 FLENGD--IVTACSDGVTRIWTVHSDKVADSLELEAYAS---------ELSQYKLCRKKVGGLKLEDLPGLEAL------ 140 (563)
Q Consensus 78 ~~p~g~--i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~---------~v~~~~~~~~~~~~i~~~d~~~~~~l------ 140 (563)
|+|..+ +.+++.+|.|.+||+...+..... .+.|.. .-.....+.+.|..|.++|.+.....
T Consensus 172 ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~-~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~ 250 (673)
T KOG4378|consen 172 YSPSKRFLLSIASDKGAVTLWDVQGMSPIFHA-SEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYS 250 (673)
T ss_pred cccccceeeEeeccCCeEEEEeccCCCcccch-hhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeec
Confidence 999887 788999999999999876532211 112222 22244556678899999999755321
Q ss_pred ----eecccCCCeEEEEecCCCeEEEEEeccc
Q 008510 141 ----QIPGTNAGQTKVVREGDNGVAYSWDMKE 168 (563)
Q Consensus 141 ----~~~g~~dg~~~l~~~~~~~~~~~wd~~~ 168 (563)
.+.+..+|.+...+... +.++.||+..
T Consensus 251 ~Plstvaf~~~G~~L~aG~s~-G~~i~YD~R~ 281 (673)
T KOG4378|consen 251 HPLSTVAFSECGTYLCAGNSK-GELIAYDMRS 281 (673)
T ss_pred CCcceeeecCCceEEEeecCC-ceEEEEeccc
Confidence 12266778777766655 6667788643
No 148
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.06 E-value=2.9e-09 Score=114.18 Aligned_cols=135 Identities=17% Similarity=0.251 Sum_probs=108.6
Q ss_pred CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe---------
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE--------- 68 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~--------- 68 (563)
+|+.++.||.|-.|++-+. ++...+.+.||.++|.++.++|++ .+|+.+-||.|+||+ ++.+..++.
T Consensus 107 ~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~ 186 (933)
T KOG1274|consen 107 SGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFI 186 (933)
T ss_pred CCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCcccccc
Confidence 5789999999999999999 888889999999999999999999 999999999999999 777766664
Q ss_pred cCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeeccccc--------ccceeEEeeccCCceEEEeCCC
Q 008510 69 HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYAS--------ELSQYKLCRKKVGGLKLEDLPG 136 (563)
Q Consensus 69 h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~--------~v~~~~~~~~~~~~i~~~d~~~ 136 (563)
....+..++|+|+|. ++.-+.|+.|++|+..++..........+.. ....++.++..+|.|.+||..+
T Consensus 187 ~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 187 LSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred ccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 133578899999855 9999999999999999886433222211111 1235556677889999999985
No 149
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.06 E-value=1.7e-08 Score=101.79 Aligned_cols=202 Identities=18% Similarity=0.239 Sum_probs=135.0
Q ss_pred CCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCCeEEEEeCCCcEEEEc-CCce-----------------
Q 008510 3 GVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWK-DGVC----------------- 63 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g~l~s~s~D~tvriWd-~~~~----------------- 63 (563)
+.-++||..+|+|.||+. ..+..+....|.+.|++++...+|.++||+.|+.|..|| ..+.
T Consensus 257 ngdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~ 336 (626)
T KOG2106|consen 257 NGDVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVA 336 (626)
T ss_pred CCCEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEeecCccceEEeccccccccccccCchhcCCeeEEe
Confidence 445889999999999999 666777777999999999999999888999999999999 2110
Q ss_pred -------------------------eEEEecCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCceec--eeeecccccc
Q 008510 64 -------------------------VQSIEHPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVAD--SLELEAYASE 115 (563)
Q Consensus 64 -------------------------~~~l~h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~--~~~~~~~~~~ 115 (563)
+.++.|.+..|.++.+|+.+ +++++.|+.+++|+-..-.... ..+.....-+
T Consensus 337 e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~~~k~~wt~~~~d~~~~~~fh 416 (626)
T KOG2106|consen 337 EGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWNDHKLEWTKIIEDPAECADFH 416 (626)
T ss_pred cCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEccCCceeEEEEecCceeEeecc
Confidence 11122777899999999887 9999999999999922111111 1111122222
Q ss_pred cceeEEeeccCCceEEEeCCCC---------ceee-ecccCCCeEEEEecCCCeEEEEEe--cccceEEEeCcEeeCCCC
Q 008510 116 LSQYKLCRKKVGGLKLEDLPGL---------EALQ-IPGTNAGQTKVVREGDNGVAYSWD--MKEQKWDKLGEVVDGPDD 183 (563)
Q Consensus 116 v~~~~~~~~~~~~i~~~d~~~~---------~~l~-~~g~~dg~~~l~~~~~~~~~~~wd--~~~~~w~~~g~v~~~~~~ 183 (563)
+....+.+...|---+.|..+. +.+. +..+++|.+..+.+.|+ .+|+|. ...+...+.+...
T Consensus 417 psg~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~-~iyiy~Vs~~g~~y~r~~k~~----- 490 (626)
T KOG2106|consen 417 PSGVVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDN-HIYIYRVSANGRKYSRVGKCS----- 490 (626)
T ss_pred CcceEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCC-eEEEEEECCCCcEEEEeeeec-----
Confidence 3333444444444444444433 2232 23788898888888874 445554 3333333333222
Q ss_pred CCCceeecCcccCcEEEEEc-CCCCeeeeecCCCCCChh
Q 008510 184 GMNRPILDGIQYDYVFDVDI-GDGEPTRKLPYNRSDNPY 221 (563)
Q Consensus 184 ~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~~~~~w 221 (563)
| .+|...|+ .|++.+.+-+-|-.+--|
T Consensus 491 --------g---s~ithLDwS~Ds~~~~~~S~d~eiLyW 518 (626)
T KOG2106|consen 491 --------G---SPITHLDWSSDSQFLVSNSGDYEILYW 518 (626)
T ss_pred --------C---ceeEEeeecCCCceEEeccCceEEEEE
Confidence 2 46888888 888888888877777777
No 150
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.06 E-value=5.9e-09 Score=99.16 Aligned_cols=201 Identities=15% Similarity=0.149 Sum_probs=119.0
Q ss_pred CCEEEEEECCCcEEEEcC-----C--C---ceeEEEecCCCcEEEEEEcCC--C-eEEEEeCCCcEEEEc--CC------
Q 008510 3 GVGIISASHDCTIRLWAL-----T--G---QVLMEMVGHTAIVYSIDSHAS--G-LIVSGSEDRFAKIWK--DG------ 61 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~-----~--g---~~i~~l~gH~~~V~~v~~~p~--g-~l~s~s~D~tvriWd--~~------ 61 (563)
|+.+|+||.|++++||.- + | ....++....+.|++|.|.|. | .+++++.||++|||+ +.
T Consensus 73 GqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W 152 (361)
T KOG2445|consen 73 GQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQW 152 (361)
T ss_pred cceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccc
Confidence 788999999999999975 1 2 134567788899999999996 6 899999999999998 21
Q ss_pred ceeEEEe--------cCCcEEEEEEccCC---c-EEEEeCC-----CcEEEEEcCCC--ceeceeeecccccccceeEEe
Q 008510 62 VCVQSIE--------HPGCVWDAKFLENG---D-IVTACSD-----GVTRIWTVHSD--KVADSLELEAYASELSQYKLC 122 (563)
Q Consensus 62 ~~~~~l~--------h~~~V~~v~~~p~g---~-i~sgs~D-----g~Irvwd~~~~--~~~~~~~~~~~~~~v~~~~~~ 122 (563)
...+.++ +.....||.|+|.- . ||.|+.+ +.++||..... +.....++..+.+.+....++
T Consensus 153 ~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wA 232 (361)
T KOG2445|consen 153 TLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWA 232 (361)
T ss_pred hhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeec
Confidence 1122222 44478899999742 2 6777655 47888876543 445555666666655544432
Q ss_pred eccCCceEEEeCCCCceeeecccCCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCC----CceeecCcccCcE
Q 008510 123 RKKVGGLKLEDLPGLEALQIPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGM----NRPILDGIQYDYV 198 (563)
Q Consensus 123 ~~~~~~i~~~d~~~~~~l~~~g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~----~~~~~~g~~~d~v 198 (563)
....... .+...+++|| +.++.-...... +. -.++.....-.. ....+.+|. ..|
T Consensus 233 Pn~Gr~y---------~~lAvA~kDg-v~I~~v~~~~s~-i~---------~ee~~~~~~~~~l~v~~vs~~~~H~-~~V 291 (361)
T KOG2445|consen 233 PNIGRSY---------HLLAVATKDG-VRIFKVKVARSA-IE---------EEEVLAPDLMTDLPVEKVSELDDHN-GEV 291 (361)
T ss_pred cccCCce---------eeEEEeecCc-EEEEEEeeccch-hh---------hhcccCCCCccccceEEeeeccCCC-Cce
Confidence 2111000 0112233343 333222110000 00 001111110000 112255665 668
Q ss_pred EEEEc-CCCCeeeeecCCCCCChhHHH
Q 008510 199 FDVDI-GDGEPTRKLPYNRSDNPYDAA 224 (563)
Q Consensus 199 ~~vd~-~dg~~~~~~~~n~~~~~w~~a 224 (563)
+.+.+ -.|..+.+.+.|+.++.|...
T Consensus 292 Wrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 292 WRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred EEEEEeeeeeEEeecCCCceeeehhhh
Confidence 88888 577778888888999999874
No 151
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.04 E-value=4.6e-08 Score=101.99 Aligned_cols=139 Identities=17% Similarity=0.228 Sum_probs=109.0
Q ss_pred CCEEEEEECCCcEEEEcC--CCceeEEEecCC-CcEEEEEEcCCCeEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEEE
Q 008510 3 GVGIISASHDCTIRLWAL--TGQVLMEMVGHT-AIVYSIDSHASGLIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDA 76 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~--~g~~i~~l~gH~-~~V~~v~~~p~g~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~v 76 (563)
.+.+|.+-.||+|-+|++ .--+..++.||. ..|.+++|++.++|.|.+.+|+|.-|| +++.+..+. ..+.||++
T Consensus 37 S~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsi 116 (691)
T KOG2048|consen 37 SNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSI 116 (691)
T ss_pred CCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccCceeEEecCCCcceeEE
Confidence 456888899999999999 345667788877 579999999777999999999999999 888887777 45599999
Q ss_pred EEccCCc-EEEEeCCCcEEEEEcCCCceeceeeeccccc-------cc-ceeEEeeccCCceEEEeCCCCceee
Q 008510 77 KFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYAS-------EL-SQYKLCRKKVGGLKLEDLPGLEALQ 141 (563)
Q Consensus 77 ~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~-------~v-~~~~~~~~~~~~i~~~d~~~~~~l~ 141 (563)
+.+|.++ ++.||.||.+..++..++.......+..-.. .. ....+.+..||-|++||...+..+.
T Consensus 117 ai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~ 190 (691)
T KOG2048|consen 117 AINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLH 190 (691)
T ss_pred EeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEE
Confidence 9999888 8999999999999998887544333221111 11 2335667788889999998776655
No 152
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.03 E-value=1.8e-09 Score=112.55 Aligned_cols=207 Identities=15% Similarity=0.189 Sum_probs=145.0
Q ss_pred CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCC--C--eEEEEeCCCcEEEEc---CCceeEEEe-cCCc
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHAS--G--LIVSGSEDRFAKIWK---DGVCVQSIE-HPGC 72 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~--g--~l~s~s~D~tvriWd---~~~~~~~l~-h~~~ 72 (563)
+|.+||+|..-|++|+|++ +-+....++.|.+.|.|+.++.. + .++++|.|+-|.|+| ....++++. |...
T Consensus 470 ~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSss 549 (1080)
T KOG1408|consen 470 DGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSS 549 (1080)
T ss_pred CcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccc
Confidence 5889999999999999999 66777788999999999999753 2 799999999999999 566788888 9999
Q ss_pred EEEEEEccCC--c-EEEEeCCCcEEEEEcC---CCcee-------ceeeeccc-ccccceeEEeeccCCceEEEeCCCCc
Q 008510 73 VWDAKFLENG--D-IVTACSDGVTRIWTVH---SDKVA-------DSLELEAY-ASELSQYKLCRKKVGGLKLEDLPGLE 138 (563)
Q Consensus 73 V~~v~~~p~g--~-i~sgs~Dg~Irvwd~~---~~~~~-------~~~~~~~~-~~~v~~~~~~~~~~~~i~~~d~~~~~ 138 (563)
|++|.|--+| . ++++|.|..|.+-... +++.. ....+... .+......+.+.+|.+|+++++..+.
T Consensus 550 ITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgK 629 (1080)
T KOG1408|consen 550 ITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGK 629 (1080)
T ss_pred eeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccc
Confidence 9999998877 3 8999999876543222 12211 11122211 23345777888999999999998665
Q ss_pred eeeec-ccC-------------CCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-
Q 008510 139 ALQIP-GTN-------------AGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI- 203 (563)
Q Consensus 139 ~l~~~-g~~-------------dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~- 203 (563)
..... |+. .|.+......|+.. +++|..++. .+. ...||. ..|..+.|
T Consensus 630 q~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl-~~~Df~sgE------cvA---------~m~GHs-E~VTG~kF~ 692 (1080)
T KOG1408|consen 630 QVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTL-CFVDFVSGE------CVA---------QMTGHS-EAVTGVKFL 692 (1080)
T ss_pred eeeeecccccCCCceEEEEECCCccEEEEeecCCce-EEEEeccch------hhh---------hhcCcc-hheeeeeec
Confidence 54433 332 23333333333222 233333331 111 234555 67888999
Q ss_pred CCCCeeeeecCCCCCChhHHHH
Q 008510 204 GDGEPTRKLPYNRSDNPYDAAD 225 (563)
Q Consensus 204 ~dg~~~~~~~~n~~~~~w~~a~ 225 (563)
+|-+-+.+.+.|+-+-+|.+-.
T Consensus 693 nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 693 NDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred ccchhheeecCCceEEEEECch
Confidence 8889999999999999998753
No 153
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.03 E-value=1.4e-09 Score=106.97 Aligned_cols=101 Identities=24% Similarity=0.498 Sum_probs=85.0
Q ss_pred CEEEEEECCCcEEEEcC-C----C-----ceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc-C--------C--
Q 008510 4 VGIISASHDCTIRLWAL-T----G-----QVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-D--------G-- 61 (563)
Q Consensus 4 ~~l~s~s~DgtIrlWd~-~----g-----~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd-~--------~-- 61 (563)
+.++||+.|..||+|-+ . + +.+..+.+|+..|++|.|+|+| .++||+.+|.|.+|- . .
T Consensus 27 ~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~ 106 (434)
T KOG1009|consen 27 NKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEA 106 (434)
T ss_pred cceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchh
Confidence 47999999999999987 1 2 2345678999999999999999 999999999999998 3 1
Q ss_pred ---c----eeEEEe-cCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCcee
Q 008510 62 ---V----CVQSIE-HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVA 104 (563)
Q Consensus 62 ---~----~~~~l~-h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~ 104 (563)
+ ....+. |...|..++|+|++. +++|+.|+.+++||+..|...
T Consensus 107 ~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~ 158 (434)
T KOG1009|consen 107 DLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLL 158 (434)
T ss_pred hhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeE
Confidence 1 122233 888999999999999 899999999999999999744
No 154
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.03 E-value=2.2e-09 Score=108.59 Aligned_cols=80 Identities=19% Similarity=0.296 Sum_probs=65.4
Q ss_pred CEEEEEECCCcEEEEcCCCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc-CCceeEEEe-cCCcEEEEEEcc
Q 008510 4 VGIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-DGVCVQSIE-HPGCVWDAKFLE 80 (563)
Q Consensus 4 ~~l~s~s~DgtIrlWd~~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd-~~~~~~~l~-h~~~V~~v~~~p 80 (563)
+.|+.|++||.+.+-+-.|+..+.+..|.+.|.|-.|+|+| -++|+|+||.|++|. +|-.-.++. ...+|+|++|.|
T Consensus 76 d~~~i~s~DGkf~il~k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p 155 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAP 155 (737)
T ss_pred ceEEEEcCCceEEEecccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECC
Confidence 57899999999999998999999999999999999999999 899999999999999 554333333 223666666666
Q ss_pred CCc
Q 008510 81 NGD 83 (563)
Q Consensus 81 ~g~ 83 (563)
+..
T Consensus 156 ~S~ 158 (737)
T KOG1524|consen 156 NSN 158 (737)
T ss_pred CCC
Confidence 655
No 155
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.02 E-value=6.1e-09 Score=100.40 Aligned_cols=134 Identities=19% Similarity=0.205 Sum_probs=99.8
Q ss_pred CEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCC-C--eEEEEeCCCcEEEEc--CC--ceeEEEe-cC-CcE
Q 008510 4 VGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHAS-G--LIVSGSEDRFAKIWK--DG--VCVQSIE-HP-GCV 73 (563)
Q Consensus 4 ~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~-g--~l~s~s~D~tvriWd--~~--~~~~~l~-h~-~~V 73 (563)
..+|++-..|+||+||. +|+.+..+++|...+..++|..+ + .+.+|+.||+||+|| .. ......+ ++ .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 35777777899999999 89999999999999999999774 3 799999999999999 22 2223333 55 477
Q ss_pred EEEEEccCCc-EEEEe----CCCcEEEEEcCCCceeceeeecccccccc---------eeEEeeccCCceEEEeCCCC
Q 008510 74 WDAKFLENGD-IVTAC----SDGVTRIWTVHSDKVADSLELEAYASELS---------QYKLCRKKVGGLKLEDLPGL 137 (563)
Q Consensus 74 ~~v~~~p~g~-i~sgs----~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~---------~~~~~~~~~~~i~~~d~~~~ 137 (563)
.|++..-++. +++|. .|-.|.+||+|..++.-..-...|.+.|. ...++++.||-+.++|+...
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d 198 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKD 198 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCC
Confidence 7877765666 66664 46789999999987532223344555544 44567888899999998654
No 156
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=98.99 E-value=1e-08 Score=98.37 Aligned_cols=93 Identities=26% Similarity=0.440 Sum_probs=73.9
Q ss_pred CEEEEEECCCcEEEEcC-CCceeEEE---ecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc-CCc-------e-------
Q 008510 4 VGIISASHDCTIRLWAL-TGQVLMEM---VGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-DGV-------C------- 63 (563)
Q Consensus 4 ~~l~s~s~DgtIrlWd~-~g~~i~~l---~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd-~~~-------~------- 63 (563)
++++|||.|-+||+|++ +..|+..+ .||.+.|.+++|+++| +++|||.|.++++|+ ..+ +
T Consensus 149 qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~ 228 (385)
T KOG1034|consen 149 QLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPN 228 (385)
T ss_pred cEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCC
Confidence 58999999999999999 88888775 5799999999999999 999999999999999 310 0
Q ss_pred ------------eEEE---e-cCCcEEEEEEccCCc-EEEEeCCCcEEEEEc
Q 008510 64 ------------VQSI---E-HPGCVWDAKFLENGD-IVTACSDGVTRIWTV 98 (563)
Q Consensus 64 ------------~~~l---~-h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~ 98 (563)
+-.+ . |...|-||.|.. + +++=|-++.|..|-.
T Consensus 229 ~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~g--d~ilSkscenaI~~w~p 278 (385)
T KOG1034|consen 229 KTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFG--DFILSKSCENAIVCWKP 278 (385)
T ss_pred CccCcCCccccccccccccccccchHHHHHHHh--hheeecccCceEEEEec
Confidence 0111 1 666777777754 5 677777788888866
No 157
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=98.98 E-value=3.1e-09 Score=110.70 Aligned_cols=100 Identities=24% Similarity=0.423 Sum_probs=84.4
Q ss_pred CCCEEEEEECC-----CcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc-CC--c---eeEEEe
Q 008510 2 PGVGIISASHD-----CTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-DG--V---CVQSIE 68 (563)
Q Consensus 2 ~g~~l~s~s~D-----gtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd-~~--~---~~~~l~ 68 (563)
+|+.+||++.. ..|++|+. +-..+..+.+|+-.|+.++|+||| +|++.|.|+++.+|. .. . ......
T Consensus 536 ~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k 615 (764)
T KOG1063|consen 536 TGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLK 615 (764)
T ss_pred CCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhcccc
Confidence 37788888764 45899998 666677899999999999999999 999999999999998 11 1 111233
Q ss_pred -cCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCC
Q 008510 69 -HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSD 101 (563)
Q Consensus 69 -h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~ 101 (563)
|+..||++.|+|++. ++|+|.|.+|+||.....
T Consensus 616 ~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 616 AHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred ccceEEEEcccCcccceeEEecCCceEEEEeccCc
Confidence 999999999999999 999999999999998877
No 158
>KOG4328 consensus WD40 protein [Function unknown]
Probab=98.98 E-value=9.8e-09 Score=102.38 Aligned_cols=96 Identities=21% Similarity=0.362 Sum_probs=80.6
Q ss_pred CEEEEEECCCcEEEEcC--CCceeEEEecCCCcEEEEEEcCCC--eEEEEeCCCcEEEEc----CCc---eeEEEecCCc
Q 008510 4 VGIISASHDCTIRLWAL--TGQVLMEMVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK----DGV---CVQSIEHPGC 72 (563)
Q Consensus 4 ~~l~s~s~DgtIrlWd~--~g~~i~~l~gH~~~V~~v~~~p~g--~l~s~s~D~tvriWd----~~~---~~~~l~h~~~ 72 (563)
..++.+.+=|...+||. .|.....+.-|.-.|.+|+++|.. .++|||.|++++||| .++ .+.++.|...
T Consensus 292 ~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~Hrrs 371 (498)
T KOG4328|consen 292 RSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRS 371 (498)
T ss_pred ccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccce
Confidence 34566777778899998 555566677799999999999976 899999999999999 222 3667779999
Q ss_pred EEEEEEccCCc-EEEEeCCCcEEEEEcC
Q 008510 73 VWDAKFLENGD-IVTACSDGVTRIWTVH 99 (563)
Q Consensus 73 V~~v~~~p~g~-i~sgs~Dg~Irvwd~~ 99 (563)
|.+..|+|.|- ++|.|.|..|||||..
T Consensus 372 V~sAyFSPs~gtl~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 372 VNSAYFSPSGGTLLTTCQDNEIRVFDSS 399 (498)
T ss_pred eeeeEEcCCCCceEeeccCCceEEeecc
Confidence 99999999754 9999999999999985
No 159
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=98.98 E-value=1e-08 Score=100.56 Aligned_cols=98 Identities=28% Similarity=0.488 Sum_probs=82.5
Q ss_pred CEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCC-cEEEEE
Q 008510 4 VGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPG-CVWDAK 77 (563)
Q Consensus 4 ~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~-~V~~v~ 77 (563)
+.|+|+|.|.+|.+|++ +|+.+-++. |.+.|++++|+.+| .++|++.|+.||||| .++.+..-. |.+ .-..+-
T Consensus 145 NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Rai 223 (472)
T KOG0303|consen 145 NVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAI 223 (472)
T ss_pred hhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeE
Confidence 56889999999999999 899888887 99999999999999 999999999999999 777776664 776 566677
Q ss_pred EccCCcEEEEe----CCCcEEEEEcCCCc
Q 008510 78 FLENGDIVTAC----SDGVTRIWTVHSDK 102 (563)
Q Consensus 78 ~~p~g~i~sgs----~Dg~Irvwd~~~~~ 102 (563)
|..+|.++|.+ ++..+-+||...-.
T Consensus 224 fl~~g~i~tTGfsr~seRq~aLwdp~nl~ 252 (472)
T KOG0303|consen 224 FLASGKIFTTGFSRMSERQIALWDPNNLE 252 (472)
T ss_pred EeccCceeeeccccccccceeccCccccc
Confidence 88899965543 57789999976543
No 160
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.98 E-value=1.1e-09 Score=119.01 Aligned_cols=100 Identities=27% Similarity=0.487 Sum_probs=89.9
Q ss_pred CCCCEEEEEECCCcEEEEcC-CCceeE-EEecCCCcEEEEEEcCCCeEEEEeCCCcEEEEc-CCceeEEEe-cCC-cEEE
Q 008510 1 MPGVGIISASHDCTIRLWAL-TGQVLM-EMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWK-DGVCVQSIE-HPG-CVWD 75 (563)
Q Consensus 1 ~~g~~l~s~s~DgtIrlWd~-~g~~i~-~l~gH~~~V~~v~~~p~g~l~s~s~D~tvriWd-~~~~~~~l~-h~~-~V~~ 75 (563)
+||++++|+|.|.++|+|++ +++... +.-||+..|+.++|+|+ .++|+|+|.++|+|+ .+..++++. |.+ .+|.
T Consensus 185 ~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n-~i~t~gedctcrvW~~~~~~l~~y~~h~g~~iw~ 263 (967)
T KOG0974|consen 185 LDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN-RIITVGEDCTCRVWGVNGTQLEVYDEHSGKGIWK 263 (967)
T ss_pred cCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc-eeEEeccceEEEEEecccceehhhhhhhhcceeE
Confidence 48999999999999999999 666554 77899999999999999 999999999999999 888888887 766 9999
Q ss_pred EEEccCCc-EEEEeCCCcEEEEEcCCC
Q 008510 76 AKFLENGD-IVTACSDGVTRIWTVHSD 101 (563)
Q Consensus 76 v~~~p~g~-i~sgs~Dg~Irvwd~~~~ 101 (563)
++..++.. ++|++.||.+++||+...
T Consensus 264 ~~~~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 264 IAVPIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred EEEcCCceEEEeeccCcchhhhhhhcc
Confidence 99998877 899999999999998653
No 161
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=98.97 E-value=8.6e-09 Score=97.22 Aligned_cols=204 Identities=21% Similarity=0.263 Sum_probs=121.9
Q ss_pred CCEEEEEECCCcEEEEcC-CCce-eEEE-----ecCCCcEEEEEEcC--CC-eEEEEeCCCcEEEEc--CCceeEEEe--
Q 008510 3 GVGIISASHDCTIRLWAL-TGQV-LMEM-----VGHTAIVYSIDSHA--SG-LIVSGSEDRFAKIWK--DGVCVQSIE-- 68 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~-~g~~-i~~l-----~gH~~~V~~v~~~p--~g-~l~s~s~D~tvriWd--~~~~~~~l~-- 68 (563)
++.+++-. |..|-+|++ ++.. +..+ .+|+...++-+|+| +| .+++ ..|++++.|| +.++...|.
T Consensus 135 s~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~t-t~d~tl~~~D~RT~~~~~sI~dA 212 (370)
T KOG1007|consen 135 SDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVAT-TSDSTLQFWDLRTMKKNNSIEDA 212 (370)
T ss_pred CCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEE-eCCCcEEEEEccchhhhcchhhh
Confidence 44555544 889999999 4432 4433 24666778889999 45 5555 4589999999 667777777
Q ss_pred cCCcEEEEEEccCCc--EEEEeCCCcEEEEEcCCCceeceeeecccccccceeEEeeccCCceEEEeCCCCceeeecccC
Q 008510 69 HPGCVWDAKFLENGD--IVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLCRKKVGGLKLEDLPGLEALQIPGTN 146 (563)
Q Consensus 69 h~~~V~~v~~~p~g~--i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~d~~~~~~l~~~g~~ 146 (563)
|...|..+.|+|+-. +++|+.||.||+||.|.-+ .+..++..|...+..+.+. +....+...|++
T Consensus 213 Hgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk-~pv~el~~HsHWvW~VRfn------------~~hdqLiLs~~S 279 (370)
T KOG1007|consen 213 HGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTK-FPVQELPGHSHWVWAVRFN------------PEHDQLILSGGS 279 (370)
T ss_pred hcceeeeccCCCCceEEEEEcCCCccEEEEeccCCC-ccccccCCCceEEEEEEec------------CccceEEEecCC
Confidence 888999999999976 8999999999999999876 4455565555443222110 122334444555
Q ss_pred CCeEEEEecCCCeE--EEEEecccceEE--EeCcEeeCCCCCCCceeecCcccCcEEEEEcCCCCe--eeeecCCCCCCh
Q 008510 147 AGQTKVVREGDNGV--AYSWDMKEQKWD--KLGEVVDGPDDGMNRPILDGIQYDYVFDVDIGDGEP--TRKLPYNRSDNP 220 (563)
Q Consensus 147 dg~~~l~~~~~~~~--~~~wd~~~~~w~--~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~~dg~~--~~~~~~n~~~~~ 220 (563)
|..+.+.+...-.. ....+..+.... ...+-+. +-..+....|+-|+ |-||.+++....| .++++||+.+-+
T Consensus 280 Ds~V~Lsca~svSSE~qi~~~~dese~e~~dseer~k-pL~dg~l~tydehE-DSVY~~aWSsadPWiFASLSYDGRviI 357 (370)
T KOG1007|consen 280 DSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVK-PLQDGQLETYDEHE-DSVYALAWSSADPWIFASLSYDGRVII 357 (370)
T ss_pred CceeEEEeccccccccccccccccccCcchhhHHhcc-cccccccccccccc-cceEEEeeccCCCeeEEEeccCceEEe
Confidence 55554444322100 000100000000 0000000 00111334577777 8899999955554 789999997644
Q ss_pred hHH
Q 008510 221 YDA 223 (563)
Q Consensus 221 w~~ 223 (563)
-.|
T Consensus 358 s~V 360 (370)
T KOG1007|consen 358 SSV 360 (370)
T ss_pred ecC
Confidence 443
No 162
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.97 E-value=1.5e-09 Score=110.04 Aligned_cols=113 Identities=20% Similarity=0.364 Sum_probs=86.1
Q ss_pred eEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe--cCCcEEEEEEccC--Cc-EEEEeCCCcEEEE
Q 008510 25 LMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE--HPGCVWDAKFLEN--GD-IVTACSDGVTRIW 96 (563)
Q Consensus 25 i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~--h~~~V~~v~~~p~--g~-i~sgs~Dg~Irvw 96 (563)
.+++.||++.|.|+.|+.+| .++|||.|-.+.||| ..+.++.+. |.+.|.|+.|.|. .+ +++|+.|..|++|
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF 122 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence 45788999999999999999 999999999999999 888899998 9999999999993 33 7999999999999
Q ss_pred EcCCCcee-----ceeeec---ccccccc---------eeEEeeccCCceEEEeCCCC
Q 008510 97 TVHSDKVA-----DSLELE---AYASELS---------QYKLCRKKVGGLKLEDLPGL 137 (563)
Q Consensus 97 d~~~~~~~-----~~~~~~---~~~~~v~---------~~~~~~~~~~~i~~~d~~~~ 137 (563)
|+...+.- ..++.. .|...|. ....++++||+|+.+|++.+
T Consensus 123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREp 180 (758)
T KOG1310|consen 123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREP 180 (758)
T ss_pred ecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCC
Confidence 99853210 011111 1222221 33456677788888887754
No 163
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=98.95 E-value=1.1e-08 Score=105.42 Aligned_cols=111 Identities=22% Similarity=0.316 Sum_probs=83.7
Q ss_pred CCCEEEEEECCCcEEEEcCC-Cc--ee---EEEecCC-CcEEEEEEcCCC--eEEEEeCCCcEEEEc--CCceeEEEe-c
Q 008510 2 PGVGIISASHDCTIRLWALT-GQ--VL---MEMVGHT-AIVYSIDSHASG--LIVSGSEDRFAKIWK--DGVCVQSIE-H 69 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~~-g~--~i---~~l~gH~-~~V~~v~~~p~g--~l~s~s~D~tvriWd--~~~~~~~l~-h 69 (563)
++..+++||.|..||||.+. |- .+ ....||. -.|.++.|+|.. .+++ +..|+|+||| +++.+..+. |
T Consensus 91 ~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s-~a~g~v~i~D~stqk~~~el~~h 169 (1012)
T KOG1445|consen 91 ADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILAS-GAHGSVYITDISTQKTAVELSGH 169 (1012)
T ss_pred chhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEe-ccCceEEEEEcccCceeecccCC
Confidence 35679999999999999993 32 11 1223555 467899999964 5555 5578999999 777777777 9
Q ss_pred CCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeeccccc
Q 008510 70 PGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYAS 114 (563)
Q Consensus 70 ~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~ 114 (563)
++.|.+..|+.||. +++.|.|..|||||.|..- ......++|.+
T Consensus 170 ~d~vQSa~WseDG~llatscKdkqirifDPRa~~-~piQ~te~H~~ 214 (1012)
T KOG1445|consen 170 TDKVQSADWSEDGKLLATSCKDKQIRIFDPRASM-EPIQTTEGHGG 214 (1012)
T ss_pred chhhhccccccCCceEeeecCCcceEEeCCccCC-Ccccccccccc
Confidence 99999999999999 8999999999999998654 22223344543
No 164
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=98.95 E-value=5.1e-08 Score=103.81 Aligned_cols=189 Identities=17% Similarity=0.244 Sum_probs=130.9
Q ss_pred CEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEecC-CcEEEEEE
Q 008510 4 VGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIEHP-GCVWDAKF 78 (563)
Q Consensus 4 ~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~h~-~~V~~v~~ 78 (563)
+.++.|+.+|.+.+|++ +++.+.++.+|.+.|+++.-+|-= .++.|.++|+|.|++ .++.+.+++|. +.|.+++|
T Consensus 173 NKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSF 252 (910)
T KOG1539|consen 173 NKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSF 252 (910)
T ss_pred eeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEe
Confidence 35788999999999999 999999999999999999988864 899999999999999 88999999986 79999999
Q ss_pred ccCCc--EEEEeCCCcEEEEEcCCCceeceeeecccccccceeEEeeccCCceEEEeCCCCceeeecccCCCeEEEEecC
Q 008510 79 LENGD--IVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLCRKKVGGLKLEDLPGLEALQIPGTNAGQTKVVREG 156 (563)
Q Consensus 79 ~p~g~--i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~d~~~~~~l~~~g~~dg~~~l~~~~ 156 (563)
..||. +++|+..|.+-+||++..+.... ....|...+.... -+++..++ +....
T Consensus 253 rtDG~p~las~~~~G~m~~wDLe~kkl~~v-~~nah~~sv~~~~------------fl~~epVl-----------~ta~~ 308 (910)
T KOG1539|consen 253 RTDGNPLLASGRSNGDMAFWDLEKKKLINV-TRNAHYGSVTGAT------------FLPGEPVL-----------VTAGA 308 (910)
T ss_pred ccCCCeeEEeccCCceEEEEEcCCCeeeee-eeccccCCcccce------------ecCCCceE-----------eeccC
Confidence 99998 79999999999999998874321 1112222222211 12222222 22223
Q ss_pred CCeE-EEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc--CCCCeeeeecCCCCCChhHHHHHHHHh
Q 008510 157 DNGV-AYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI--GDGEPTRKLPYNRSDNPYDAADKWLLK 230 (563)
Q Consensus 157 ~~~~-~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~--~dg~~~~~~~~n~~~~~w~~a~~f~~~ 230 (563)
|+.. .+++|...|. .+ ..+...||. .--..+.+ ..|..+++...|.+-+.+.+-+.++.+
T Consensus 309 DnSlk~~vfD~~dg~----pR---------~LR~R~GHs-~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~ 371 (910)
T KOG1539|consen 309 DNSLKVWVFDSGDGV----PR---------LLRSRGGHS-APPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQ 371 (910)
T ss_pred CCceeEEEeeCCCCc----ch---------heeeccCCC-CCchheeeeccCcEEEEecccCcchhhhhhhHHHHhH
Confidence 3222 3333422221 01 111223333 33455555 577788888888888888887666543
No 165
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=98.95 E-value=1.4e-08 Score=105.83 Aligned_cols=186 Identities=19% Similarity=0.323 Sum_probs=116.8
Q ss_pred CCE-EEEEECCCcEEEEcC---CCceeEEEecCCCcEEEEEEcCCC----eEEEEeCCCcEEEEc---CC----------
Q 008510 3 GVG-IISASHDCTIRLWAL---TGQVLMEMVGHTAIVYSIDSHASG----LIVSGSEDRFAKIWK---DG---------- 61 (563)
Q Consensus 3 g~~-l~s~s~DgtIrlWd~---~g~~i~~l~gH~~~V~~v~~~p~g----~l~s~s~D~tvriWd---~~---------- 61 (563)
+.+ ++.|+.+..|.++.- +.+.+..+.||++.|.+++|...+ .++|||.|+.||||. .+
T Consensus 158 ~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~ 237 (764)
T KOG1063|consen 158 KTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDS 237 (764)
T ss_pred CcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccc
Confidence 444 455556677777775 235678899999999999997532 799999999999998 21
Q ss_pred ----------ce---eE------E-E-ecCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCc--eeceeeecccccccc
Q 008510 62 ----------VC---VQ------S-I-EHPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDK--VADSLELEAYASELS 117 (563)
Q Consensus 62 ----------~~---~~------~-l-~h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~--~~~~~~~~~~~~~v~ 117 (563)
.+ ++ + + .|.+.|+++-|+|.+. |++++.|.++-+|...+.. ......+....+.
T Consensus 238 ~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~-- 315 (764)
T KOG1063|consen 238 LTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGS-- 315 (764)
T ss_pred cccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeeccccc--
Confidence 11 11 1 1 2889999999999996 9999999999999877543 2111111111000
Q ss_pred eeEEeeccCCceEEEeCCCCceeeecccCCCeEEEEecCCCeEEEEEe-cccceEEEeCcEeeCCCCCCCceeecCcccC
Q 008510 118 QYKLCRKKVGGLKLEDLPGLEALQIPGTNAGQTKVVREGDNGVAYSWD-MKEQKWDKLGEVVDGPDDGMNRPILDGIQYD 196 (563)
Q Consensus 118 ~~~~~~~~~~~i~~~d~~~~~~l~~~g~~dg~~~l~~~~~~~~~~~wd-~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d 196 (563)
..-+|. ...++++...+..+.. +--+.|. .....|... ..+.||. +
T Consensus 316 ----------a~GF~g--------~lw~~n~~~ii~~g~~-Gg~hlWkt~d~~~w~~~-------------~~iSGH~-~ 362 (764)
T KOG1063|consen 316 ----------AGGFWG--------GLWSPNSNVIIAHGRT-GGFHLWKTKDKTFWTQE-------------PVISGHV-D 362 (764)
T ss_pred ----------ccceee--------EEEcCCCCEEEEeccc-CcEEEEeccCccceeec-------------ccccccc-c
Confidence 000111 1122222222222211 2234444 223445433 2345565 6
Q ss_pred cEEEEEc-CCCCeeeeecCCCCCChhHH
Q 008510 197 YVFDVDI-GDGEPTRKLPYNRSDNPYDA 223 (563)
Q Consensus 197 ~v~~vd~-~dg~~~~~~~~n~~~~~w~~ 223 (563)
-|.+|++ +.|+.+++.+-|.+.+++..
T Consensus 363 ~V~dv~W~psGeflLsvs~DQTTRlFa~ 390 (764)
T KOG1063|consen 363 GVKDVDWDPSGEFLLSVSLDQTTRLFAR 390 (764)
T ss_pred cceeeeecCCCCEEEEeccccceeeecc
Confidence 7999999 99999999999999876653
No 166
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=98.94 E-value=6e-09 Score=105.55 Aligned_cols=158 Identities=11% Similarity=0.180 Sum_probs=116.1
Q ss_pred CCCEEEEEECCCcEEEEcCCCceeEEEecCCCcEEEEEEcCCC--eEEEEeCCCcEEEEc-CCceeEEEecCCcEEEEEE
Q 008510 2 PGVGIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK-DGVCVQSIEHPGCVWDAKF 78 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~~g~~i~~l~gH~~~V~~v~~~p~g--~l~s~s~D~tvriWd-~~~~~~~l~h~~~V~~v~~ 78 (563)
||..++|+|.||.|++|+-+|-...++......|+|++|.|++ .+.+.+..-.|+-.. ..+.++--.|.+-|.++.|
T Consensus 115 dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W 194 (737)
T KOG1524|consen 115 DGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVFCQGGHISIKPLAANSKIIRWRAHDGLVLSLSW 194 (737)
T ss_pred CCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEEecCCeEEEeecccccceeEEeccCcEEEEeec
Confidence 6888999999999999999998888888888999999999987 455545444455444 5566554459999999999
Q ss_pred ccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccccceeEEee------ccCCceEEEeCCCCceeeecccCCCeEE
Q 008510 79 LENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLCR------KKVGGLKLEDLPGLEALQIPGTNAGQTK 151 (563)
Q Consensus 79 ~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~~~~~~~------~~~~~i~~~d~~~~~~l~~~g~~dg~~~ 151 (563)
+|..+ |++||.|-..+|||--..- ...-..++..+.+..+.. .+-...++...+.+++.....+.||.-.
T Consensus 195 ~~~s~lI~sgGED~kfKvWD~~G~~---Lf~S~~~ey~ITSva~npd~~~~v~S~nt~R~~~p~~GSifnlsWS~DGTQ~ 271 (737)
T KOG1524|consen 195 STQSNIIASGGEDFRFKIWDAQGAN---LFTSAAEEYAITSVAFNPEKDYLLWSYNTARFSSPRVGSIFNLSWSADGTQA 271 (737)
T ss_pred CccccceeecCCceeEEeecccCcc---cccCChhccceeeeeeccccceeeeeeeeeeecCCCccceEEEEEcCCCcee
Confidence 99988 8999999999999976432 112223333333333332 2335666666677777888899999888
Q ss_pred EEecCCCeEEE
Q 008510 152 VVREGDNGVAY 162 (563)
Q Consensus 152 l~~~~~~~~~~ 162 (563)
.+.++.+.+++
T Consensus 272 a~gt~~G~v~~ 282 (737)
T KOG1524|consen 272 TCGTSTGQLIV 282 (737)
T ss_pred eccccCceEEE
Confidence 88877766643
No 167
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=98.93 E-value=4.4e-08 Score=95.78 Aligned_cols=136 Identities=11% Similarity=0.116 Sum_probs=101.1
Q ss_pred CCCEEEEEECCCcEEEEcCC-------CceeEEEec-CCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEecC
Q 008510 2 PGVGIISASHDCTIRLWALT-------GQVLMEMVG-HTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIEHP 70 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~~-------g~~i~~l~g-H~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~h~ 70 (563)
+|++|++||.|..+++|.++ .+++..... |.+.|+|++|...+ .+.+|+.+++|...| +.+.+..+.|.
T Consensus 67 N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~ 146 (609)
T KOG4227|consen 67 NDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANEN 146 (609)
T ss_pred CCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeeccc
Confidence 47899999999999999972 255554433 55899999999877 899999999999999 77778888765
Q ss_pred C---cEEEEEEccCCc-EEEEeCCCcEEEEEcCCCc-eeceeeecc---------cccccceeEEeeccCCceEEEeCCC
Q 008510 71 G---CVWDAKFLENGD-IVTACSDGVTRIWTVHSDK-VADSLELEA---------YASELSQYKLCRKKVGGLKLEDLPG 136 (563)
Q Consensus 71 ~---~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~-~~~~~~~~~---------~~~~v~~~~~~~~~~~~i~~~d~~~ 136 (563)
. .|+.+..+|..+ +++.+.++.|.+||.+... ......... |....-..++.....+.+.+||.+.
T Consensus 147 ~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~ 226 (609)
T KOG4227|consen 147 NNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRM 226 (609)
T ss_pred CcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeecc
Confidence 4 899999999766 8999999999999998765 111111111 1111223444566667888888764
Q ss_pred C
Q 008510 137 L 137 (563)
Q Consensus 137 ~ 137 (563)
+
T Consensus 227 ~ 227 (609)
T KOG4227|consen 227 Q 227 (609)
T ss_pred c
Confidence 4
No 168
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=98.92 E-value=8.7e-09 Score=107.54 Aligned_cols=150 Identities=19% Similarity=0.196 Sum_probs=111.1
Q ss_pred CEEEEEECCCcEEEEcC--CCceeEEEecCCCcEEEEEEcCCC---eEEEEeCCCcEEEEc---CCceeEEEe-----cC
Q 008510 4 VGIISASHDCTIRLWAL--TGQVLMEMVGHTAIVYSIDSHASG---LIVSGSEDRFAKIWK---DGVCVQSIE-----HP 70 (563)
Q Consensus 4 ~~l~s~s~DgtIrlWd~--~g~~i~~l~gH~~~V~~v~~~p~g---~l~s~s~D~tvriWd---~~~~~~~l~-----h~ 70 (563)
+.||++|.|.-|+++|+ +-.++.++.+|.+.|++|.|.-.| .+++||.|+.+.+-. .+.-....+ ..
T Consensus 517 kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~k 596 (1080)
T KOG1408|consen 517 KLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSK 596 (1080)
T ss_pred HhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceecccccccccc
Confidence 57899999999999999 678899999999999999998776 799999999877544 111111111 22
Q ss_pred CcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeee-cccccc--------cceeEEeeccCCceEEEeCCCCcee
Q 008510 71 GCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLEL-EAYASE--------LSQYKLCRKKVGGLKLEDLPGLEAL 140 (563)
Q Consensus 71 ~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~-~~~~~~--------v~~~~~~~~~~~~i~~~d~~~~~~l 140 (563)
..++.|+..|+.. ++++|.|..|||||+.++++...+.- +.+++. -.-+..+...|.++.++|+-.++.+
T Consensus 597 tTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcv 676 (1080)
T KOG1408|consen 597 TTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECV 676 (1080)
T ss_pred ceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhh
Confidence 4799999999988 99999999999999999985533211 111111 2234456678899999999888876
Q ss_pred eec-ccCCCeEEEE
Q 008510 141 QIP-GTNAGQTKVV 153 (563)
Q Consensus 141 ~~~-g~~dg~~~l~ 153 (563)
... ||.+-.+-+.
T Consensus 677 A~m~GHsE~VTG~k 690 (1080)
T KOG1408|consen 677 AQMTGHSEAVTGVK 690 (1080)
T ss_pred hhhcCcchheeeee
Confidence 543 7766544333
No 169
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=98.91 E-value=1.5e-07 Score=95.15 Aligned_cols=221 Identities=16% Similarity=0.226 Sum_probs=129.8
Q ss_pred CCCEEEEEECCCcEEEEcC-CCcee---EEEecCC-CcEEEEEEcCCCeEEEEeCCCcEEEEc--CCceeEEE-ecCCcE
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVL---MEMVGHT-AIVYSIDSHASGLIVSGSEDRFAKIWK--DGVCVQSI-EHPGCV 73 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i---~~l~gH~-~~V~~v~~~p~g~l~s~s~D~tvriWd--~~~~~~~l-~h~~~V 73 (563)
+.+.+++|+ -+.+..|+. .+... ..+++++ .+|.|++|.++|.++||..+|++.||+ ..+..+.. .|++.|
T Consensus 212 d~nliit~G-k~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv 290 (626)
T KOG2106|consen 212 DPNLIITCG-KGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVITGDSGGNILIWSKGTNRISKQVHAHDGGV 290 (626)
T ss_pred CCcEEEEeC-CceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEeEeeecCCce
Confidence 456788887 578999999 44333 3455544 689999999999999999999999999 33333333 499999
Q ss_pred EEEEEccCCcEEEEeCCCcEEEEEcCCCceeceeeecccccccce------eEEeeccCCceEEEeCCCCceeeecccCC
Q 008510 74 WDAKFLENGDIVTACSDGVTRIWTVHSDKVADSLELEAYASELSQ------YKLCRKKVGGLKLEDLPGLEALQIPGTNA 147 (563)
Q Consensus 74 ~~v~~~p~g~i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~~------~~~~~~~~~~i~~~d~~~~~~l~~~g~~d 147 (563)
.+++...+|.+++|+.|..|-.||-. -+.....++..-...+.. -.+.+...+.|-.-.+...-.+...||.|
T Consensus 291 ~~L~~lr~GtllSGgKDRki~~Wd~~-y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~d 369 (626)
T KOG2106|consen 291 FSLCMLRDGTLLSGGKDRKIILWDDN-YRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGD 369 (626)
T ss_pred EEEEEecCccEeecCccceEEecccc-ccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEeccc
Confidence 99999999999999999999999933 222222222221111110 02222222333333333322232333333
Q ss_pred CeE---------EEEecCCCeEEEEEecccceEEEeCcE----ee---------CCCCCC-------CceeecCc-ccCc
Q 008510 148 GQT---------KVVREGDNGVAYSWDMKEQKWDKLGEV----VD---------GPDDGM-------NRPILDGI-QYDY 197 (563)
Q Consensus 148 g~~---------~l~~~~~~~~~~~wd~~~~~w~~~g~v----~~---------~~~~~~-------~~~~~~g~-~~d~ 197 (563)
+-. .+..++.+..+.+|+...-.|.++-.- .+ +...+. ...+..-| ...-
T Consensus 370 elwgla~hps~~q~~T~gqdk~v~lW~~~k~~wt~~~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ 449 (626)
T KOG2106|consen 370 ELWGLATHPSKNQLLTCGQDKHVRLWNDHKLEWTKIIEDPAECADFHPSGVVAVGTATGRWFVLDTETQDLVTIHTDNEQ 449 (626)
T ss_pred ceeeEEcCCChhheeeccCcceEEEccCCceeEEEEecCceeEeeccCcceEEEeeccceEEEEecccceeEEEEecCCc
Confidence 222 222333335566787666667665110 00 000000 00011101 1233
Q ss_pred EEEEEc-CCCCeeeeecCCCCCChhHHH
Q 008510 198 VFDVDI-GDGEPTRKLPYNRSDNPYDAA 224 (563)
Q Consensus 198 v~~vd~-~dg~~~~~~~~n~~~~~w~~a 224 (563)
+-.|.+ ++|..++-++-|..+.+|.+.
T Consensus 450 ls~v~ysp~G~~lAvgs~d~~iyiy~Vs 477 (626)
T KOG2106|consen 450 LSVVRYSPDGAFLAVGSHDNHIYIYRVS 477 (626)
T ss_pred eEEEEEcCCCCEEEEecCCCeEEEEEEC
Confidence 556778 899999999999988888875
No 170
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.91 E-value=5.3e-08 Score=100.13 Aligned_cols=189 Identities=17% Similarity=0.163 Sum_probs=115.8
Q ss_pred ceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEecCCcEEEEEEccCCc--EEEEeCCCcEEEEE
Q 008510 23 QVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIEHPGCVWDAKFLENGD--IVTACSDGVTRIWT 97 (563)
Q Consensus 23 ~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~h~~~V~~v~~~p~g~--i~sgs~Dg~Irvwd 97 (563)
.|-..+.||++.|.|+++.|.| .+++||.||+||||. +|.|++++...+.|.||+|+|.++ ++..+.+..+.+-+
T Consensus 391 ~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivn 470 (733)
T KOG0650|consen 391 RCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVN 470 (733)
T ss_pred eeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeC
Confidence 4556789999999999999999 999999999999999 999999999888999999999887 55555555566655
Q ss_pred cCCCceec----eeeecccc---cccc--eeEEee---ccCCceEEEeCCCCceeeecccCCCeEEEEecCCCeE--EEE
Q 008510 98 VHSDKVAD----SLELEAYA---SELS--QYKLCR---KKVGGLKLEDLPGLEALQIPGTNAGQTKVVREGDNGV--AYS 163 (563)
Q Consensus 98 ~~~~~~~~----~~~~~~~~---~~v~--~~~~~~---~~~~~i~~~d~~~~~~l~~~g~~dg~~~l~~~~~~~~--~~~ 163 (563)
..=|.... .+.+.... .... ..+... .....+++---....+-++..|..|.+..+-.+++.. +++
T Consensus 471 p~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vli 550 (733)
T KOG0650|consen 471 PIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLI 550 (733)
T ss_pred ccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEE
Confidence 44332111 11111110 0000 001011 0111223222223334445577777766555543222 333
Q ss_pred EecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEcCCCCeeeeecCCCCCChhHHHHHH
Q 008510 164 WDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDIGDGEPTRKLPYNRSDNPYDAADKW 227 (563)
Q Consensus 164 wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~~dg~~~~~~~~n~~~~~w~~a~~f 227 (563)
.....+. .+.--.+..+.|..+.|...++.+-..-...+++|+..++-
T Consensus 551 HQLSK~~----------------sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqe 598 (733)
T KOG0650|consen 551 HQLSKRK----------------SQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQE 598 (733)
T ss_pred Eeccccc----------------ccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHH
Confidence 3322211 11111122256889999777788888888899999988763
No 171
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.91 E-value=6.3e-09 Score=102.95 Aligned_cols=100 Identities=19% Similarity=0.366 Sum_probs=78.5
Q ss_pred CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe---cCCcEE
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE---HPGCVW 74 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~---h~~~V~ 74 (563)
+|..+++|+.||++|+|++ +-..+.....|...|.++.|+||| .+++-+.| ..+||+ ++.+++..+ .+-...
T Consensus 155 ~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~ 233 (398)
T KOG0771|consen 155 DGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFS 233 (398)
T ss_pred CCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCcccchhhh
Confidence 5789999999999999997 777777888899999999999999 89999999 999999 887777766 222566
Q ss_pred EEEEccCC-----cEE-EEeCCCcEEEEEcCCCc
Q 008510 75 DAKFLENG-----DIV-TACSDGVTRIWTVHSDK 102 (563)
Q Consensus 75 ~v~~~p~g-----~i~-sgs~Dg~Irvwd~~~~~ 102 (563)
.+.|+.++ +++ .-...+.|+.||+...+
T Consensus 234 ~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~ 267 (398)
T KOG0771|consen 234 SCRFSVDNAQETLRLAASQFPGGGVRLCDISLWS 267 (398)
T ss_pred hceecccCCCceEEEEEecCCCCceeEEEeeeec
Confidence 77787766 233 33344667777765443
No 172
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=98.91 E-value=6.6e-08 Score=92.35 Aligned_cols=73 Identities=11% Similarity=0.181 Sum_probs=65.4
Q ss_pred EEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCceecee
Q 008510 35 VYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSL 107 (563)
Q Consensus 35 V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~ 107 (563)
-.|+.|++.| +++.|+.||.|-||| +...-+.+. |..+|.|++|+++|+ ++|+|.|..|.+||+..|.+....
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri 103 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI 103 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEE
Confidence 6789999999 999999999999999 666667777 989999999999999 999999999999999999855433
No 173
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=98.90 E-value=3.6e-08 Score=93.18 Aligned_cols=167 Identities=14% Similarity=0.175 Sum_probs=112.5
Q ss_pred CCCEEEEEECCCcEEEEcC-CC---ceeEEEecCCCcEEEEEEcCCC--eEEEEeCCCcEEEEc-CCceeEE-Ee---c-
Q 008510 2 PGVGIISASHDCTIRLWAL-TG---QVLMEMVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK-DGVCVQS-IE---H- 69 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g---~~i~~l~gH~~~V~~v~~~p~g--~l~s~s~D~tvriWd-~~~~~~~-l~---h- 69 (563)
+-+++.++|-|.|..|||+ .| .....+-.|...|++++|...| .|+|+|.||+||++| ....-.+ +. .
T Consensus 162 dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~ 241 (364)
T KOG0290|consen 162 DPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSP 241 (364)
T ss_pred CcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCC
Confidence 5578999999999999999 54 3456678999999999999876 899999999999999 3222222 22 3
Q ss_pred CCcEEEEEEccCCc--EEEEeCC-CcEEEEEcCCCceeceeeecccccccceeEE---------eeccCCceEEEeCCCC
Q 008510 70 PGCVWDAKFLENGD--IVTACSD-GVTRIWTVHSDKVADSLELEAYASELSQYKL---------CRKKVGGLKLEDLPGL 137 (563)
Q Consensus 70 ~~~V~~v~~~p~g~--i~sgs~D-g~Irvwd~~~~~~~~~~~~~~~~~~v~~~~~---------~~~~~~~i~~~d~~~~ 137 (563)
......++|++..- +|+-..| ..|.|.|+|... .+...++.|...|+.... +++.|....+||++..
T Consensus 242 ~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~-tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~ 320 (364)
T KOG0290|consen 242 STPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPC-TPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQM 320 (364)
T ss_pred CCcceeeccCcCCchHHhhhhcCCceEEEEEecCCC-cceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccc
Confidence 34788899988654 7776666 469999999765 455677788877764442 3444556777877532
Q ss_pred ceeeecccCCCeEEEEecCCCeEEEEEecccceEEE
Q 008510 138 EALQIPGTNAGQTKVVREGDNGVAYSWDMKEQKWDK 173 (563)
Q Consensus 138 ~~l~~~g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~ 173 (563)
.. -.-+..+.++..+....-.+|+.....|..
T Consensus 321 ~~----~~~~dPilay~a~~EVNqi~Ws~~~~Dwia 352 (364)
T KOG0290|consen 321 PR----ENGEDPILAYTAGGEVNQIQWSSSQPDWIA 352 (364)
T ss_pred cc----cCCCCchhhhhccceeeeeeecccCCCEEE
Confidence 11 011222333333332334567766666653
No 174
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=98.90 E-value=2.3e-08 Score=106.29 Aligned_cols=163 Identities=18% Similarity=0.231 Sum_probs=130.2
Q ss_pred CCEEEEEECCCcEEEEcC-CCceeEEE---ecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEecCCcEEE
Q 008510 3 GVGIISASHDCTIRLWAL-TGQVLMEM---VGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIEHPGCVWD 75 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~-~g~~i~~l---~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~h~~~V~~ 75 (563)
|++.+-|+..|+|-+|++ +|-..+.+ ..|.+.|.+++...-+ .++|++.||-+++|| ....+..+....++.+
T Consensus 460 GNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~ 539 (910)
T KOG1539|consen 460 GNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITG 539 (910)
T ss_pred CceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcce
Confidence 677888899999999999 88888888 5899999999997766 899999999999999 5566777777778888
Q ss_pred EEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeeccccccccee--------EEeeccCCceEEEeCCCCcee------
Q 008510 76 AKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELSQY--------KLCRKKVGGLKLEDLPGLEAL------ 140 (563)
Q Consensus 76 v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~~~--------~~~~~~~~~i~~~d~~~~~~l------ 140 (563)
+..+.... ++.++.|-.|+++|..+.+..+ .+.+|.+.+..+ .++++.|+.|++||+++...+
T Consensus 540 iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR--~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd 617 (910)
T KOG1539|consen 540 IVYHRVSDLLAIALDDFSIRVVDVVTRKVVR--EFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVD 617 (910)
T ss_pred eeeeehhhhhhhhcCceeEEEEEchhhhhhH--HhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecC
Confidence 88888766 8999999999999999887543 233444444433 335677899999999987543
Q ss_pred ----eecccCCCeEEEEecCCCeEEEEEecc
Q 008510 141 ----QIPGTNAGQTKVVREGDNGVAYSWDMK 167 (563)
Q Consensus 141 ----~~~g~~dg~~~l~~~~~~~~~~~wd~~ 167 (563)
....++.|.+....+-+..-+|.|...
T Consensus 618 ~~~~sls~SPngD~LAT~Hvd~~gIylWsNk 648 (910)
T KOG1539|consen 618 SPCTSLSFSPNGDFLATVHVDQNGIYLWSNK 648 (910)
T ss_pred CcceeeEECCCCCEEEEEEecCceEEEEEch
Confidence 334778888888888876778899743
No 175
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=98.89 E-value=4.4e-08 Score=97.88 Aligned_cols=195 Identities=17% Similarity=0.173 Sum_probs=137.7
Q ss_pred CCcEEEEEEcCCC-eEEEEeCCCcEEEEc-CC---ceeEEEe-cCCcEEEEEEccCCc--EEEEeCCCcEEEEEcCCCce
Q 008510 32 TAIVYSIDSHASG-LIVSGSEDRFAKIWK-DG---VCVQSIE-HPGCVWDAKFLENGD--IVTACSDGVTRIWTVHSDKV 103 (563)
Q Consensus 32 ~~~V~~v~~~p~g-~l~s~s~D~tvriWd-~~---~~~~~l~-h~~~V~~v~~~p~g~--i~sgs~Dg~Irvwd~~~~~~ 103 (563)
.+.|.+|.|+|.. .+.+||.||+++|+. +| ..++.+. ...+|.+.+|.|+|. +++++.-...+.||+.+.+.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 3679999999998 899999999999999 54 4567777 556999999999998 78888899999999988775
Q ss_pred eceeeecc--------ccc-ccceeEEeeccCCceEEEeCCCCcee----------eecccCCCeEEEEecCCCeEEEEE
Q 008510 104 ADSLELEA--------YAS-ELSQYKLCRKKVGGLKLEDLPGLEAL----------QIPGTNAGQTKVVREGDNGVAYSW 164 (563)
Q Consensus 104 ~~~~~~~~--------~~~-~v~~~~~~~~~~~~i~~~d~~~~~~l----------~~~g~~dg~~~l~~~~~~~~~~~w 164 (563)
.......+ |+- +...+++..+..|.|.+....+.+.+ ...+++||...+..+++ +.++.|
T Consensus 293 ~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~-GeV~v~ 371 (514)
T KOG2055|consen 293 TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGT-GEVYVW 371 (514)
T ss_pred ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCC-ceEEEE
Confidence 43333222 221 23345555666677777666554432 22366788666666555 588999
Q ss_pred ecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeeeecCCCCCChhHHHHHHHHhcCCCcccHHHHH
Q 008510 165 DMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRKLPYNRSDNPYDAADKWLLKENLPFSYRQQIV 242 (563)
Q Consensus 165 d~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~~~~~w~~a~~f~~~~~l~~~~~~~v~ 242 (563)
|.....+...+..- |.-+ -.++.+ .+|.++++++--+-+|+|+-..-|-..+--|..-+++++
T Consensus 372 nl~~~~~~~rf~D~-------------G~v~--gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLt 435 (514)
T KOG2055|consen 372 NLRQNSCLHRFVDD-------------GSVH--GTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLT 435 (514)
T ss_pred ecCCcceEEEEeec-------------Cccc--eeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhh
Confidence 98877544332111 1111 134444 578888999888889999988888888878876666664
No 176
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=98.89 E-value=3.3e-08 Score=95.45 Aligned_cols=133 Identities=19% Similarity=0.378 Sum_probs=89.9
Q ss_pred CCEEEEEECCCcEEEEcC-C-C-ceeEEEecCC-CcEEEEEEcCCC-eEEEEeC----CCcEEEEc---CCceeEEEe--
Q 008510 3 GVGIISASHDCTIRLWAL-T-G-QVLMEMVGHT-AIVYSIDSHASG-LIVSGSE----DRFAKIWK---DGVCVQSIE-- 68 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~-~-g-~~i~~l~gH~-~~V~~v~~~p~g-~l~s~s~----D~tvriWd---~~~~~~~l~-- 68 (563)
+..+.||+.||+||+||+ . + .....+.+|. .+..|++.+-.+ .+++|.+ |-.|.+|| ..+.+..+.
T Consensus 84 ~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eS 163 (376)
T KOG1188|consen 84 PHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNES 163 (376)
T ss_pred CCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhh
Confidence 356889999999999999 3 3 3344556677 345566665444 5666543 56799999 334355554
Q ss_pred cCCcEEEEEEccCCc--EEEEeCCCcEEEEEcCCCceeceeeec------------ccccccceeEEeeccCCceEEEeC
Q 008510 69 HPGCVWDAKFLENGD--IVTACSDGVTRIWTVHSDKVADSLELE------------AYASELSQYKLCRKKVGGLKLEDL 134 (563)
Q Consensus 69 h~~~V~~v~~~p~g~--i~sgs~Dg~Irvwd~~~~~~~~~~~~~------------~~~~~v~~~~~~~~~~~~i~~~d~ 134 (563)
|.+.|+++.|+|+.. +++||.||.|.+||+..... ...+. ++.......+++.....+..+|++
T Consensus 164 H~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E--eDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~el 241 (376)
T KOG1188|consen 164 HNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE--EDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYEL 241 (376)
T ss_pred ccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc--hhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEc
Confidence 999999999999754 89999999999999986531 11111 111122234556666778888888
Q ss_pred CCC
Q 008510 135 PGL 137 (563)
Q Consensus 135 ~~~ 137 (563)
...
T Consensus 242 e~~ 244 (376)
T KOG1188|consen 242 EDG 244 (376)
T ss_pred cCC
Confidence 654
No 177
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=98.88 E-value=5.5e-08 Score=97.22 Aligned_cols=207 Identities=11% Similarity=0.098 Sum_probs=126.5
Q ss_pred CEEEEEECCCcEEEEcCCCc---eeEEEecCCCcEEEEEEcCCC--eEEEEeCCCcEEEEc--CCc--------------
Q 008510 4 VGIISASHDCTIRLWALTGQ---VLMEMVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK--DGV-------------- 62 (563)
Q Consensus 4 ~~l~s~s~DgtIrlWd~~g~---~i~~l~gH~~~V~~v~~~p~g--~l~s~s~D~tvriWd--~~~-------------- 62 (563)
..+++||.|+++++|.++|+ .+..+.--..+|.+.+|.|+| .++++|.-.....|| +.+
T Consensus 226 plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~ 305 (514)
T KOG2055|consen 226 PLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKS 305 (514)
T ss_pred ceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccch
Confidence 46899999999999999664 455665567889999999998 688888888999999 221
Q ss_pred -------------------------------eeEEEecCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeec
Q 008510 63 -------------------------------CVQSIEHPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELE 110 (563)
Q Consensus 63 -------------------------------~~~~l~h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~ 110 (563)
.+.++..++.|..++|+.+|+ |+++|.+|.|.+||++...+.+...-.
T Consensus 306 ~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~ 385 (514)
T KOG2055|consen 306 MERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDD 385 (514)
T ss_pred hheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeec
Confidence 122223456688999999988 888888999999999988755443322
Q ss_pred ccc------ccc-ceeEEeeccCCceEEEeCCCCc-----------------eeeecccCCCeEEEEecCCCeE-EEEEe
Q 008510 111 AYA------SEL-SQYKLCRKKVGGLKLEDLPGLE-----------------ALQIPGTNAGQTKVVREGDNGV-AYSWD 165 (563)
Q Consensus 111 ~~~------~~v-~~~~~~~~~~~~i~~~d~~~~~-----------------~l~~~g~~dg~~~l~~~~~~~~-~~~wd 165 (563)
+-. .+. ..+..+++..|-+.++|....- +-...+++|+++..+.+..... ...-.
T Consensus 386 G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVH 465 (514)
T KOG2055|consen 386 GSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVH 465 (514)
T ss_pred CccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEe
Confidence 111 111 1344456666788888853210 0111244444443333321111 00000
Q ss_pred cccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeeeecCCCCCChhHH
Q 008510 166 MKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRKLPYNRSDNPYDA 223 (563)
Q Consensus 166 ~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~~~~~w~~ 223 (563)
.... .|.. . .--.+..-.+|.+++| |.|..++-+--.+.+.+|..
T Consensus 466 vPS~------TVFs-N------fP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL 511 (514)
T KOG2055|consen 466 VPSC------TVFS-N------FPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKL 511 (514)
T ss_pred ccce------eeec-c------CCCCCCcccceEEEEecCCCceEEeecCCCceeeEee
Confidence 0000 0000 0 0011334578999999 87887777777777777764
No 178
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=98.85 E-value=9.7e-08 Score=91.57 Aligned_cols=211 Identities=18% Similarity=0.220 Sum_probs=128.5
Q ss_pred CCCEEEEEECCCcEEEEcC--CC---c--------eeEEEe-cCCCcEEEEEEc-------CCC-eEEEEeCCCcEEEEc
Q 008510 2 PGVGIISASHDCTIRLWAL--TG---Q--------VLMEMV-GHTAIVYSIDSH-------ASG-LIVSGSEDRFAKIWK 59 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~--~g---~--------~i~~l~-gH~~~V~~v~~~-------p~g-~l~s~s~D~tvriWd 59 (563)
||.-|++-+.|..+++|++ +. + ...+++ .....||+.+|- |+. .+++++.|.-|++||
T Consensus 60 DGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wd 139 (406)
T KOG2919|consen 60 DGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWD 139 (406)
T ss_pred CCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccccCceeeee
Confidence 6889999999999999997 21 1 111111 123568888875 444 899999999999999
Q ss_pred --CCceeEEEe---cCC---cEEEEEEccCCcEEEEeCCCcEEEEEc-CCCceeceeeeccc-----ccccceeEEe---
Q 008510 60 --DGVCVQSIE---HPG---CVWDAKFLENGDIVTACSDGVTRIWTV-HSDKVADSLELEAY-----ASELSQYKLC--- 122 (563)
Q Consensus 60 --~~~~~~~l~---h~~---~V~~v~~~p~g~i~sgs~Dg~Irvwd~-~~~~~~~~~~~~~~-----~~~v~~~~~~--- 122 (563)
+|+...++. |.+ ...+++|+|||.-+-++....||+||+ |+|+..+....... ..-+++..++
T Consensus 140 aftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~ 219 (406)
T KOG2919|consen 140 AFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMD 219 (406)
T ss_pred ccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCC
Confidence 887766665 544 467999999999555678899999999 88875443322211 1112222222
Q ss_pred ------eccCCceEEEeCCCCceeeec-ccCCCeEEEEecCCCeE----------EEEEecccceEEEeCcEeeCCCCCC
Q 008510 123 ------RKKVGGLKLEDLPGLEALQIP-GTNAGQTKVVREGDNGV----------AYSWDMKEQKWDKLGEVVDGPDDGM 185 (563)
Q Consensus 123 ------~~~~~~i~~~d~~~~~~l~~~-g~~dg~~~l~~~~~~~~----------~~~wd~~~~~w~~~g~v~~~~~~~~ 185 (563)
++....+-++.-.+.+.+... |+..|.+.+.++.++.. +.+||++.-. +.+-.+-.+
T Consensus 220 ~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~-~pv~~L~rh----- 293 (406)
T KOG2919|consen 220 SKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSR-DPVYALERH----- 293 (406)
T ss_pred CcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhcc-chhhhhhhh-----
Confidence 222233444444444555544 67777777666655443 4456653221 111111111
Q ss_pred CceeecCcccCcEEEEEc-CCCCeeeeecCCCCCChhHHH
Q 008510 186 NRPILDGIQYDYVFDVDI-GDGEPTRKLPYNRSDNPYDAA 224 (563)
Q Consensus 186 ~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~~~~~w~~a 224 (563)
.+.. +--+-.|+ ++|+.++++.-++.+++|+..
T Consensus 294 -----v~~T-NQRI~FDld~~~~~LasG~tdG~V~vwdlk 327 (406)
T KOG2919|consen 294 -----VGDT-NQRILFDLDPKGEILASGDTDGSVRVWDLK 327 (406)
T ss_pred -----ccCc-cceEEEecCCCCceeeccCCCccEEEEecC
Confidence 1111 11133455 688888999999999999964
No 179
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=98.84 E-value=1.4e-08 Score=102.12 Aligned_cols=117 Identities=20% Similarity=0.213 Sum_probs=98.2
Q ss_pred EEEEEECCCcEEEEcCCCc-e-eEEEecCCCcEEEEEEcCCC--eEEEEeCCCcEEEEc--CCceeEEEecCCcEEEEEE
Q 008510 5 GIISASHDCTIRLWALTGQ-V-LMEMVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK--DGVCVQSIEHPGCVWDAKF 78 (563)
Q Consensus 5 ~l~s~s~DgtIrlWd~~g~-~-i~~l~gH~~~V~~v~~~p~g--~l~s~s~D~tvriWd--~~~~~~~l~h~~~V~~v~~ 78 (563)
+|.++|.+|+|.+||++|. + ..-.+.|..+...|||+|.. .|++.|.|+.|.+|| ..+....+....+..+|+|
T Consensus 179 lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf 258 (673)
T KOG4378|consen 179 LLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAF 258 (673)
T ss_pred eeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecCCcceeee
Confidence 5788999999999999654 3 33456799999999999987 899999999999999 5555666666668999999
Q ss_pred ccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccccceeEEe
Q 008510 79 LENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLC 122 (563)
Q Consensus 79 ~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~~~~~~ 122 (563)
.++|. ++.|.+.|.|..||+|..+ .+...+.+|...|.+..+.
T Consensus 259 ~~~G~~L~aG~s~G~~i~YD~R~~k-~Pv~v~sah~~sVt~vafq 302 (673)
T KOG4378|consen 259 SECGTYLCAGNSKGELIAYDMRSTK-APVAVRSAHDASVTRVAFQ 302 (673)
T ss_pred cCCceEEEeecCCceEEEEecccCC-CCceEeeecccceeEEEee
Confidence 99999 8999999999999999876 6677788888887766653
No 180
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.84 E-value=2.6e-08 Score=97.11 Aligned_cols=91 Identities=12% Similarity=0.262 Sum_probs=82.3
Q ss_pred CCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCc-EEEEc--CCceeEEEe---cCCcEEEEEEccCCc
Q 008510 12 DCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRF-AKIWK--DGVCVQSIE---HPGCVWDAKFLENGD 83 (563)
Q Consensus 12 DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~t-vriWd--~~~~~~~l~---h~~~V~~v~~~p~g~ 83 (563)
-|.|.+||. +-+.+.++..|.+.+-+++|+++| .+||+|+-|| |||+. +|+.++.|+ .+..|.+++|+|++.
T Consensus 152 ~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~ 231 (391)
T KOG2110|consen 152 SGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQ 231 (391)
T ss_pred CceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCC
Confidence 588999999 889999999999999999999999 9999999998 79999 889898888 455899999999999
Q ss_pred -EEEEeCCCcEEEEEcCCCc
Q 008510 84 -IVTACSDGVTRIWTVHSDK 102 (563)
Q Consensus 84 -i~sgs~Dg~Irvwd~~~~~ 102 (563)
+++.|..++|.+|.+....
T Consensus 232 ~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 232 FLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred eEEEecCCCeEEEEEecccc
Confidence 7777888999999987643
No 181
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.84 E-value=1.7e-08 Score=110.01 Aligned_cols=128 Identities=27% Similarity=0.443 Sum_probs=99.4
Q ss_pred EEEEEECCCcEEEEcC--CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCcee--EEEecCCcEEEEE
Q 008510 5 GIISASHDCTIRLWAL--TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCV--QSIEHPGCVWDAK 77 (563)
Q Consensus 5 ~l~s~s~DgtIrlWd~--~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~--~~l~h~~~V~~v~ 77 (563)
++++|+.-+.|.+|+. +..++ .+.||.+.|.++.++.+| +++|+|+|+++|+|+ +.+.. ..+.|++.||.+.
T Consensus 147 ~i~~gsv~~~iivW~~~~dn~p~-~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~ 225 (967)
T KOG0974|consen 147 YIASGSVFGEIIVWKPHEDNKPI-RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACC 225 (967)
T ss_pred EEEeccccccEEEEeccccCCcc-eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEE
Confidence 6889999999999999 33343 688999999999999999 999999999999999 44443 3456999999999
Q ss_pred EccCCcEEEEeCCCcEEEEEcCCCceeceeeecccccc--------c-ceeEEeeccCCceEEEeCCCC
Q 008510 78 FLENGDIVTACSDGVTRIWTVHSDKVADSLELEAYASE--------L-SQYKLCRKKVGGLKLEDLPGL 137 (563)
Q Consensus 78 ~~p~g~i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~--------v-~~~~~~~~~~~~i~~~d~~~~ 137 (563)
|+|+ .|+|++.|-+.|+|+....... .+..|... . ....+++..|+.+++||+.+.
T Consensus 226 ~~~n-~i~t~gedctcrvW~~~~~~l~---~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 226 FLPN-RIITVGEDCTCRVWGVNGTQLE---VYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred eccc-eeEEeccceEEEEEecccceeh---hhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence 9999 9999999999999966543311 22222211 1 133456778899999998643
No 182
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.82 E-value=7.5e-08 Score=90.35 Aligned_cols=96 Identities=19% Similarity=0.344 Sum_probs=75.0
Q ss_pred CCCEEEEE--ECCCcEEEEcCCCceeEEEecCCCcEEEEEEcCCC-eEEEEeCC---CcEEEEc--CCceeEEEecCCcE
Q 008510 2 PGVGIISA--SHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVSGSED---RFAKIWK--DGVCVQSIEHPGCV 73 (563)
Q Consensus 2 ~g~~l~s~--s~DgtIrlWd~~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D---~tvriWd--~~~~~~~l~h~~~V 73 (563)
+|+.|+.+ ..++.|.+||++++.+.++. ...+..+.|+|+| .++.+|.+ |.+.+|| +.+.+.+..|.. +
T Consensus 70 ~g~~favi~g~~~~~v~lyd~~~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~-~ 146 (194)
T PF08662_consen 70 NGNEFAVIYGSMPAKVTLYDVKGKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHSD-A 146 (194)
T ss_pred CCCEEEEEEccCCcccEEEcCcccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccCc-E
Confidence 36666554 35789999999988888774 5677899999999 78877654 5699999 667777776765 7
Q ss_pred EEEEEccCCc-EEEEeC------CCcEEEEEcCC
Q 008510 74 WDAKFLENGD-IVTACS------DGVTRIWTVHS 100 (563)
Q Consensus 74 ~~v~~~p~g~-i~sgs~------Dg~Irvwd~~~ 100 (563)
..++|+|+|+ ++++.. |+.++||+...
T Consensus 147 t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 147 TDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred EEEEEcCCCCEEEEEEeccceeccccEEEEEecC
Confidence 8999999999 766653 78889999853
No 183
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=98.79 E-value=9.8e-09 Score=104.23 Aligned_cols=79 Identities=23% Similarity=0.317 Sum_probs=69.2
Q ss_pred CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEEE
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDA 76 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~v 76 (563)
||+++|+.|.||.+||+|. +.+++..++..-+...||+|+||| ++++||+|--|.||. ..+.+..-+ |..+|..|
T Consensus 301 DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~V 380 (636)
T KOG2394|consen 301 DGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVV 380 (636)
T ss_pred CCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeE
Confidence 7899999999999999999 666666666667889999999999 999999999999999 666655544 99999999
Q ss_pred EEcc
Q 008510 77 KFLE 80 (563)
Q Consensus 77 ~~~p 80 (563)
+|.|
T Consensus 381 aFDp 384 (636)
T KOG2394|consen 381 AFDP 384 (636)
T ss_pred eecc
Confidence 9987
No 184
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=98.78 E-value=4.7e-07 Score=93.44 Aligned_cols=133 Identities=27% Similarity=0.504 Sum_probs=102.5
Q ss_pred EEEEEEC-CCcEEEEcCC--CceeEEEecCCCcEEEEEEcCCC-eEEEEeC-CCcEEEEc--CCceeEEEe-cCCcEEEE
Q 008510 5 GIISASH-DCTIRLWALT--GQVLMEMVGHTAIVYSIDSHASG-LIVSGSE-DRFAKIWK--DGVCVQSIE-HPGCVWDA 76 (563)
Q Consensus 5 ~l~s~s~-DgtIrlWd~~--g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~-D~tvriWd--~~~~~~~l~-h~~~V~~v 76 (563)
.++.++. |+.+++|+.. +.....+.+|...|.+++|+|++ .+++++. |+++++|+ .+..+..+. |...|.++
T Consensus 125 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 204 (466)
T COG2319 125 ILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSL 204 (466)
T ss_pred EEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEE
Confidence 4555455 9999999994 68889999999999999999999 7888885 99999999 557777777 88899999
Q ss_pred EEccCCc-EEE-EeCCCcEEEEEcCCCceeceeeecccccc------c-ceeEEeeccCCceEEEeCCCCc
Q 008510 77 KFLENGD-IVT-ACSDGVTRIWTVHSDKVADSLELEAYASE------L-SQYKLCRKKVGGLKLEDLPGLE 138 (563)
Q Consensus 77 ~~~p~g~-i~s-gs~Dg~Irvwd~~~~~~~~~~~~~~~~~~------v-~~~~~~~~~~~~i~~~d~~~~~ 138 (563)
+|+|++. ++. ++.|+.|++||...+..... .+..+... . ....++...++.+++|+.+...
T Consensus 205 ~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 274 (466)
T COG2319 205 AFSPDGGLLIASGSSDGTIRLWDLSTGKLLRS-TLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSS 274 (466)
T ss_pred EEcCCcceEEEEecCCCcEEEEECCCCcEEee-ecCCCCcceeEeECCCCCEEEEecCCCcEEEeeecCCC
Confidence 9999997 544 49999999998886654431 11211111 1 1345567788999999987554
No 185
>PRK01742 tolB translocation protein TolB; Provisional
Probab=98.78 E-value=1.9e-07 Score=99.10 Aligned_cols=191 Identities=14% Similarity=0.111 Sum_probs=113.2
Q ss_pred CCcEEEEcCCCceeEEEecCCCcEEEEEEcCCC-eEEEEeCC---CcEEEEc--CCceeEEEe-cCCcEEEEEEccCCc-
Q 008510 12 DCTIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVSGSED---RFAKIWK--DGVCVQSIE-HPGCVWDAKFLENGD- 83 (563)
Q Consensus 12 DgtIrlWd~~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D---~tvriWd--~~~~~~~l~-h~~~V~~v~~~p~g~- 83 (563)
+..|++||.+|...+.+..|...+.+.+|+|+| .++.++.+ ..|++|| +++. +.+. .++...+++|+|||+
T Consensus 183 ~~~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~-~~l~~~~g~~~~~~wSPDG~~ 261 (429)
T PRK01742 183 PYEVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGAR-KVVASFRGHNGAPAFSPDGSR 261 (429)
T ss_pred eEEEEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCce-EEEecCCCccCceeECCCCCE
Confidence 478999999877777888899999999999999 77776543 3699999 4433 2233 334455789999998
Q ss_pred EEEEe-CCCcEEEE--EcCCCceeceeeec------ccccccceeEEeeccCCceEEEeCC--CCce-------eeeccc
Q 008510 84 IVTAC-SDGVTRIW--TVHSDKVADSLELE------AYASELSQYKLCRKKVGGLKLEDLP--GLEA-------LQIPGT 145 (563)
Q Consensus 84 i~sgs-~Dg~Irvw--d~~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~i~~~d~~--~~~~-------l~~~g~ 145 (563)
|+.++ .||.+.+| |+.++.......-. .+...-..+.+....++...+|+++ +... .....+
T Consensus 262 La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~~~~~~S 341 (429)
T PRK01742 262 LAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRGYSAQIS 341 (429)
T ss_pred EEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCCCCccCC
Confidence 76654 68876665 55555422111100 1111111234444455677777653 2211 112256
Q ss_pred CCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeeeecCCCCCChhHH
Q 008510 146 NAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRKLPYNRSDNPYDA 223 (563)
Q Consensus 146 ~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~~~~~w~~ 223 (563)
+||...++.+.+ . ++.||..++.+..+. .+. + ...+.+ +||+.++....+++...|.+
T Consensus 342 pDG~~ia~~~~~-~-i~~~Dl~~g~~~~lt---------------~~~--~-~~~~~~sPdG~~i~~~s~~g~~~~l~~ 400 (429)
T PRK01742 342 ADGKTLVMINGD-N-VVKQDLTSGSTEVLS---------------STF--L-DESPSISPNGIMIIYSSTQGLGKVLQL 400 (429)
T ss_pred CCCCEEEEEcCC-C-EEEEECCCCCeEEec---------------CCC--C-CCCceECCCCCEEEEEEcCCCceEEEE
Confidence 677766555443 2 344776665544221 000 0 124556 78887777777777766654
No 186
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.77 E-value=3.7e-07 Score=87.59 Aligned_cols=92 Identities=14% Similarity=0.308 Sum_probs=79.7
Q ss_pred CCCcEEEEcC-CCc--eeEEEecCCCcEEEEEEcCCC-eEEEEeCCCc-EEEEc--CCceeEEEe---cCCcEEEEEEcc
Q 008510 11 HDCTIRLWAL-TGQ--VLMEMVGHTAIVYSIDSHASG-LIVSGSEDRF-AKIWK--DGVCVQSIE---HPGCVWDAKFLE 80 (563)
Q Consensus 11 ~DgtIrlWd~-~g~--~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~t-vriWd--~~~~~~~l~---h~~~V~~v~~~p 80 (563)
.-|.|+|-|+ ..+ .-..+..|.+.|.|++.+-+| .+||+|..|| ||||| +|+.++.++ .++.|+|++|+|
T Consensus 157 k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp 236 (346)
T KOG2111|consen 157 KTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSP 236 (346)
T ss_pred ccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCC
Confidence 4588999998 222 246788999999999999999 9999999998 89999 899999998 556899999999
Q ss_pred CCc-EEEEeCCCcEEEEEcCCCc
Q 008510 81 NGD-IVTACSDGVTRIWTVHSDK 102 (563)
Q Consensus 81 ~g~-i~sgs~Dg~Irvwd~~~~~ 102 (563)
++. +++.|..|++.||.++...
T Consensus 237 ~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 237 NSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred CccEEEEEcCCCeEEEEEeecCC
Confidence 999 7888888999999998644
No 187
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=98.77 E-value=2.3e-08 Score=93.30 Aligned_cols=129 Identities=21% Similarity=0.251 Sum_probs=91.1
Q ss_pred EEEEEECCCcEEEEcC-CC----------ceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc----CCcee----
Q 008510 5 GIISASHDCTIRLWAL-TG----------QVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK----DGVCV---- 64 (563)
Q Consensus 5 ~l~s~s~DgtIrlWd~-~g----------~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd----~~~~~---- 64 (563)
.++.|-.+|.|-+||+ ++ +.+..+..|..+|.++.+.+.- .=++||.|..+..|+ ++.+.
T Consensus 167 lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e 246 (323)
T KOG0322|consen 167 LLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKE 246 (323)
T ss_pred EEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccce
Confidence 3667888999999999 55 3344456799999999988754 557788888888888 23322
Q ss_pred EEEecCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCcee-----ceeeecccccccc-eeEEeeccCCceEEEeC
Q 008510 65 QSIEHPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVA-----DSLELEAYASELS-QYKLCRKKVGGLKLEDL 134 (563)
Q Consensus 65 ~~l~h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~-----~~~~~~~~~~~v~-~~~~~~~~~~~i~~~d~ 134 (563)
.+++++ .|..+..-||++ +||+|.||.||||..++.+.. +...+....-+.. .....++.|..|.+|++
T Consensus 247 ~~lknp-Gv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 247 ITLKNP-GVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred EEecCC-CccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 122233 688889999998 799999999999999887643 2233333332333 45556778889999986
No 188
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=98.75 E-value=1.5e-08 Score=107.60 Aligned_cols=167 Identities=25% Similarity=0.262 Sum_probs=108.8
Q ss_pred CEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCCeEEEEeCCCcEEEEc-CCceeEEEe------cCCcEEE
Q 008510 4 VGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWK-DGVCVQSIE------HPGCVWD 75 (563)
Q Consensus 4 ~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g~l~s~s~D~tvriWd-~~~~~~~l~------h~~~V~~ 75 (563)
.+++++|+|..||+|.+ +|.++..+.||++.|++++|+|- .+.+.||++++|| .-..+.... ...-+.+
T Consensus 245 ~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~---~sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s 321 (1113)
T KOG0644|consen 245 TMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPR---ASSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDS 321 (1113)
T ss_pred hhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCcc---ccCCCCCceEeccccccccccCCCCCCcccccceee
Confidence 35789999999999999 99999999999999999999997 3889999999999 533322221 2346777
Q ss_pred EEEccCCc-EEEEeCCCcEEEEEcCCCceecee-eecccccccceeEEeeccCCceEEEeCCCCceeeec-ccCCCeEEE
Q 008510 76 AKFLENGD-IVTACSDGVTRIWTVHSDKVADSL-ELEAYASELSQYKLCRKKVGGLKLEDLPGLEALQIP-GTNAGQTKV 152 (563)
Q Consensus 76 v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~i~~~d~~~~~~l~~~-g~~dg~~~l 152 (563)
+-|..+|+ ++||+.|+.-+.|....-.+.... .+...........+++..+--+++|.+-.+..+... |+.|..+.+
T Consensus 322 ~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvL 401 (1113)
T KOG0644|consen 322 ILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVL 401 (1113)
T ss_pred eeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeee
Confidence 88888887 999999999888876432211110 111111112233334444456777887766544433 555544433
Q ss_pred E----------ecCCCeEEEEEecccceEEE
Q 008510 153 V----------REGDNGVAYSWDMKEQKWDK 173 (563)
Q Consensus 153 ~----------~~~~~~~~~~wd~~~~~w~~ 173 (563)
- ..+.++...+||...+.-++
T Consensus 402 d~Hpfn~ri~msag~dgst~iwdi~eg~pik 432 (1113)
T KOG0644|consen 402 DVHPFNPRIAMSAGYDGSTIIWDIWEGIPIK 432 (1113)
T ss_pred eecCCCcHhhhhccCCCceEeeecccCCcce
Confidence 2 22333455678766654443
No 189
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=98.75 E-value=9.7e-08 Score=97.16 Aligned_cols=117 Identities=16% Similarity=0.225 Sum_probs=86.0
Q ss_pred CCEEEEEECCCcEEEEcC--C-C------------c--------------eeEEEecCCCcEEEEEEcCCC-eEEEEeCC
Q 008510 3 GVGIISASHDCTIRLWAL--T-G------------Q--------------VLMEMVGHTAIVYSIDSHASG-LIVSGSED 52 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~--~-g------------~--------------~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D 52 (563)
...|+.+-.+|.+.+||. . + . ++..+.--++.|...+|+||| ++|+.|.|
T Consensus 232 ~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqD 311 (636)
T KOG2394|consen 232 DSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQD 311 (636)
T ss_pred CceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecC
Confidence 456777888888888864 1 1 1 111222234568889999999 99999999
Q ss_pred CcEEEEc-C-CceeEEEe-cCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccccceeEE
Q 008510 53 RFAKIWK-D-GVCVQSIE-HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKL 121 (563)
Q Consensus 53 ~tvriWd-~-~~~~~~l~-h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~~~~~ 121 (563)
|.+||+| . .+.+..++ -=+...||+|+|||+ |++|+.|..|.||....+|+.. .-++|...|..+.+
T Consensus 312 GfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVA--RGqGHkSWVs~VaF 382 (636)
T KOG2394|consen 312 GFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVA--RGQGHKSWVSVVAF 382 (636)
T ss_pred ceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEE--eccccccceeeEee
Confidence 9999999 4 44444444 346899999999999 9999999999999999988432 33456666665554
No 190
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=98.74 E-value=1.6e-07 Score=88.85 Aligned_cols=162 Identities=21% Similarity=0.315 Sum_probs=102.8
Q ss_pred CEEEEEECCCcEEEEcCC---Cc--eeEEE-----ecCCCcEEEEEEcCCC--eEEEEeCCCcEEEEc--CCc----eeE
Q 008510 4 VGIISASHDCTIRLWALT---GQ--VLMEM-----VGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK--DGV----CVQ 65 (563)
Q Consensus 4 ~~l~s~s~DgtIrlWd~~---g~--~i~~l-----~gH~~~V~~v~~~p~g--~l~s~s~D~tvriWd--~~~----~~~ 65 (563)
+.|||+| | .+|+|.+. ++ +...+ ..|.+++++..|+.-. ++.++|-|-|+.||| .+. ..|
T Consensus 114 dlLATs~-D-~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQ 191 (364)
T KOG0290|consen 114 DLLATSS-D-FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQ 191 (364)
T ss_pred chhhccc-C-eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeE
Confidence 3466654 3 59999982 11 11112 2456788999998643 899999999999999 431 345
Q ss_pred EEecCCcEEEEEEccCCc--EEEEeCCCcEEEEEcCCCceeceeeecccc------------cccceeEEeeccCCceEE
Q 008510 66 SIEHPGCVWDAKFLENGD--IVTACSDGVTRIWTVHSDKVADSLELEAYA------------SELSQYKLCRKKVGGLKL 131 (563)
Q Consensus 66 ~l~h~~~V~~v~~~p~g~--i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~------------~~v~~~~~~~~~~~~i~~ 131 (563)
.+.|...|..|+|...|. +|+.|.||.||+||+|.-.... ...+.-. ....-+.--......|.+
T Consensus 192 LIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHST-IIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~i 270 (364)
T KOG0290|consen 192 LIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHST-IIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVI 270 (364)
T ss_pred EEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccce-EEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEE
Confidence 566999999999999776 8999999999999999765211 0101000 001111111222356778
Q ss_pred EeCCCCceee--eccc----------CCCeEEEEecCCCeEEEEEeccc
Q 008510 132 EDLPGLEALQ--IPGT----------NAGQTKVVREGDNGVAYSWDMKE 168 (563)
Q Consensus 132 ~d~~~~~~l~--~~g~----------~dg~~~l~~~~~~~~~~~wd~~~ 168 (563)
.|++-+.... ..+| +.....++..+|+..+.+||..+
T Consensus 271 LDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q 319 (364)
T KOG0290|consen 271 LDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQ 319 (364)
T ss_pred EEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEeccc
Confidence 8876543221 1132 33345677888888899999744
No 191
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=98.72 E-value=3.7e-07 Score=87.65 Aligned_cols=194 Identities=14% Similarity=0.184 Sum_probs=133.1
Q ss_pred CCCEEEEEECCCcEEEEcCC----CceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc---CCce---eEEEecC
Q 008510 2 PGVGIISASHDCTIRLWALT----GQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK---DGVC---VQSIEHP 70 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~~----g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd---~~~~---~~~l~h~ 70 (563)
|+..+|.|-+...|.||... -+..+++..|...|++|+|+|.+ .+++|+.|+.-.+|. .++- +-.+++.
T Consensus 21 drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiN 100 (361)
T KOG1523|consen 21 DRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRIN 100 (361)
T ss_pred CCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEec
Confidence 56789999999999999982 35788999999999999999998 999999999999999 3332 2334489
Q ss_pred CcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccccceeEEeeccCCceEEEeCCCCceeeecccCCCe
Q 008510 71 GCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLCRKKVGGLKLEDLPGLEALQIPGTNAGQ 149 (563)
Q Consensus 71 ~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~d~~~~~~l~~~g~~dg~ 149 (563)
..+.+|.|+|+++ ||+||.-..|.||......-- -...|.... --.+|...|.....++...|+.|+.
T Consensus 101 rAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdW---WVsKhikkP--------irStv~sldWhpnnVLlaaGs~D~k 169 (361)
T KOG1523|consen 101 RAATCVKWSPKENKFAVGSGARLISVCYYEQENDW---WVSKHIKKP--------IRSTVTSLDWHPNNVLLAAGSTDGK 169 (361)
T ss_pred cceeeEeecCcCceEEeccCccEEEEEEEecccce---ehhhhhCCc--------cccceeeeeccCCcceecccccCcc
Confidence 9999999999988 999999999999998765300 000000000 0024455666777788888888888
Q ss_pred EEEEecCCCeEEEEEecccc----eEE---EeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeeeecCCCCCChh
Q 008510 150 TKVVREGDNGVAYSWDMKEQ----KWD---KLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRKLPYNRSDNPY 221 (563)
Q Consensus 150 ~~l~~~~~~~~~~~wd~~~~----~w~---~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~~~~~w 221 (563)
.+++.. |+=+..++ -|. +.|.+... +. ..++++..|.| ++|..++=..-|.++..-
T Consensus 170 ~rVfSa------yIK~Vdekpap~pWgsk~PFG~lm~E---------~~-~~ggwvh~v~fs~sG~~lawv~Hds~v~~~ 233 (361)
T KOG1523|consen 170 CRVFSA------YIKGVDEKPAPTPWGSKMPFGQLMSE---------AS-SSGGWVHGVLFSPSGNRLAWVGHDSTVSFV 233 (361)
T ss_pred eeEEEE------eeeccccCCCCCCCccCCcHHHHHHh---------hc-cCCCceeeeEeCCCCCEeeEecCCCceEEe
Confidence 777653 22222111 011 11222211 21 34588999999 888877777766665443
Q ss_pred H
Q 008510 222 D 222 (563)
Q Consensus 222 ~ 222 (563)
+
T Consensus 234 d 234 (361)
T KOG1523|consen 234 D 234 (361)
T ss_pred e
Confidence 3
No 192
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.70 E-value=4.4e-08 Score=99.67 Aligned_cols=101 Identities=24% Similarity=0.394 Sum_probs=85.5
Q ss_pred CCCEEEEEECCCcEEEEcC-CCceeEEE-ecCCCcEEEEEEcCCC---eEEEEeCCCcEEEEc-CC--------ce---e
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVLMEM-VGHTAIVYSIDSHASG---LIVSGSEDRFAKIWK-DG--------VC---V 64 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l-~gH~~~V~~v~~~p~g---~l~s~s~D~tvriWd-~~--------~~---~ 64 (563)
+|.+|+|||.|-.+.|||. ..+++..+ .||+..|+|+.|.|.. .++||+.|..|+++| +. .. .
T Consensus 61 dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~ 140 (758)
T KOG1310|consen 61 DGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETT 140 (758)
T ss_pred CCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchh
Confidence 7999999999999999999 77777666 4899999999999953 899999999999999 31 11 2
Q ss_pred EEEe-cCCcEEEEEEccCCc--EEEEeCCCcEEEEEcCCCc
Q 008510 65 QSIE-HPGCVWDAKFLENGD--IVTACSDGVTRIWTVHSDK 102 (563)
Q Consensus 65 ~~l~-h~~~V~~v~~~p~g~--i~sgs~Dg~Irvwd~~~~~ 102 (563)
..+. |...|..++..|++. +.+++.||+||-+|++...
T Consensus 141 ~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph 181 (758)
T KOG1310|consen 141 RCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPH 181 (758)
T ss_pred hhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCc
Confidence 2233 888999999999984 8999999999999999754
No 193
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.69 E-value=3.6e-07 Score=101.13 Aligned_cols=151 Identities=18% Similarity=0.276 Sum_probs=104.4
Q ss_pred EcCCCceeEEEecCCCcEEEEEEcCC-C-eEEEEeCCCcEEEEc----CC-----ceeEEEe-cCCcEEEEEEccCCc-E
Q 008510 18 WALTGQVLMEMVGHTAIVYSIDSHAS-G-LIVSGSEDRFAKIWK----DG-----VCVQSIE-HPGCVWDAKFLENGD-I 84 (563)
Q Consensus 18 Wd~~g~~i~~l~gH~~~V~~v~~~p~-g-~l~s~s~D~tvriWd----~~-----~~~~~l~-h~~~V~~v~~~p~g~-i 84 (563)
|+..|..+..+..|...|..++.++. + .|+|||.||+||+|+ .+ ++..++. ....+.++.+.++|+ +
T Consensus 1034 W~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~ 1113 (1431)
T KOG1240|consen 1034 WNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQF 1113 (1431)
T ss_pred CCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeE
Confidence 88899999999999999999988765 4 999999999999999 12 2333444 455899999999999 9
Q ss_pred EEEeCCCcEEEEEcCCC--ceec--------------eeeecccccccce-eEEeeccCCceEEEeCCCCcee-------
Q 008510 85 VTACSDGVTRIWTVHSD--KVAD--------------SLELEAYASELSQ-YKLCRKKVGGLKLEDLPGLEAL------- 140 (563)
Q Consensus 85 ~sgs~Dg~Irvwd~~~~--~~~~--------------~~~~~~~~~~v~~-~~~~~~~~~~i~~~d~~~~~~l------- 140 (563)
|.|+.||.|++.+++.. +... ...+.++...... ..+.+...+.|..||.+....+
T Consensus 1114 Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~ 1193 (1431)
T KOG1240|consen 1114 AVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQL 1193 (1431)
T ss_pred EEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCc
Confidence 99999999999998762 1110 0112233333334 4555666788999998754322
Q ss_pred ------eecccCCCeEEEEecCCCeEEEEEecccc
Q 008510 141 ------QIPGTNAGQTKVVREGDNGVAYSWDMKEQ 169 (563)
Q Consensus 141 ------~~~g~~dg~~~l~~~~~~~~~~~wd~~~~ 169 (563)
.....+.+.+.+.++.. +...+||.+-+
T Consensus 1194 ~hG~vTSi~idp~~~WlviGts~-G~l~lWDLRF~ 1227 (1431)
T KOG1240|consen 1194 RHGLVTSIVIDPWCNWLVIGTSR-GQLVLWDLRFR 1227 (1431)
T ss_pred cccceeEEEecCCceEEEEecCC-ceEEEEEeecC
Confidence 12234455656655555 44567876433
No 194
>KOG4328 consensus WD40 protein [Function unknown]
Probab=98.69 E-value=1.7e-07 Score=93.67 Aligned_cols=99 Identities=12% Similarity=0.141 Sum_probs=77.8
Q ss_pred CEEEEEECCCcEEEEcCC--C---ceeEEEecCCCcEEEEEEcCCC--eEEEEeCCCcEEEEc-CCceeEEEe----cCC
Q 008510 4 VGIISASHDCTIRLWALT--G---QVLMEMVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK-DGVCVQSIE----HPG 71 (563)
Q Consensus 4 ~~l~s~s~DgtIrlWd~~--g---~~i~~l~gH~~~V~~v~~~p~g--~l~s~s~D~tvriWd-~~~~~~~l~----h~~ 71 (563)
+.+++|..-|+|-+||+. + .-+..+..|...|.++.|+|.+ ++.+.|.||++|.-| .+.....+. ...
T Consensus 201 ~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~ 280 (498)
T KOG4328|consen 201 KLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNI 280 (498)
T ss_pred eEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccce
Confidence 578999999999999992 2 3456677899999999999976 899999999999999 444333222 223
Q ss_pred cEEEEEEccCCc-EEEEeCCCcEEEEEcCCCc
Q 008510 72 CVWDAKFLENGD-IVTACSDGVTRIWTVHSDK 102 (563)
Q Consensus 72 ~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~ 102 (563)
.+.++.|+.+.. ++.|..=|...+||++++.
T Consensus 281 ~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~ 312 (498)
T KOG4328|consen 281 WFSSLDFSAESRSVLFGDNVGNFNVIDLRTDG 312 (498)
T ss_pred eeeeccccCCCccEEEeecccceEEEEeecCC
Confidence 667777777655 7888877899999999876
No 195
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.68 E-value=8.2e-08 Score=105.74 Aligned_cols=198 Identities=16% Similarity=0.220 Sum_probs=121.0
Q ss_pred ECCCcEEEEcC---CCc----eeEEEecCCCcEEEEEEcCCC-----eEEEEeCCCcEEEEc-C----Cc---eeEEEe-
Q 008510 10 SHDCTIRLWAL---TGQ----VLMEMVGHTAIVYSIDSHASG-----LIVSGSEDRFAKIWK-D----GV---CVQSIE- 68 (563)
Q Consensus 10 s~DgtIrlWd~---~g~----~i~~l~gH~~~V~~v~~~p~g-----~l~s~s~D~tvriWd-~----~~---~~~~l~- 68 (563)
|.+.++-+|.+ +.+ .+..+. -....+.++|.+.| .++.|.+||.|-+|| . +. .+.+..
T Consensus 36 st~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~ 114 (1049)
T KOG0307|consen 36 STSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSK 114 (1049)
T ss_pred ccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcc
Confidence 45666777766 222 333433 23566899998754 489999999999999 2 22 233444
Q ss_pred cCCcEEEEEEccCCc--EEEEeCCCcEEEEEcCCCceec-------eeeecc--cccccceeEEeeccCCceEEEeCCCC
Q 008510 69 HPGCVWDAKFLENGD--IVTACSDGVTRIWTVHSDKVAD-------SLELEA--YASELSQYKLCRKKVGGLKLEDLPGL 137 (563)
Q Consensus 69 h~~~V~~v~~~p~g~--i~sgs~Dg~Irvwd~~~~~~~~-------~~~~~~--~~~~v~~~~~~~~~~~~i~~~d~~~~ 137 (563)
|++.|..+.|++.+. +|+|+.||.|.|||+..-.... ..++.. ....+.....++...|.+.+||++..
T Consensus 115 h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~ 194 (1049)
T KOG0307|consen 115 HTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKK 194 (1049)
T ss_pred cCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCC
Confidence 999999999999655 8999999999999998644211 111111 11224444556677789999999876
Q ss_pred ceee-------------ecccCCCeEEEEecC-CC--eEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEE
Q 008510 138 EALQ-------------IPGTNAGQTKVVREG-DN--GVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDV 201 (563)
Q Consensus 138 ~~l~-------------~~g~~dg~~~l~~~~-~~--~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~v 201 (563)
+.+. ..+|+++.++++-.. ++ .++-.||.+-- . .-.++++||+. -|.++
T Consensus 195 ~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~a---------s-----sP~k~~~~H~~-Gilsl 259 (1049)
T KOG0307|consen 195 KPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFA---------S-----SPLKILEGHQR-GILSL 259 (1049)
T ss_pred CcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeeccccc---------C-----Cchhhhccccc-ceeee
Confidence 3221 225666655554433 22 33556764211 1 12344556653 35666
Q ss_pred Ec--CCCCeeeeecCCCCCChhHH
Q 008510 202 DI--GDGEPTRKLPYNRSDNPYDA 223 (563)
Q Consensus 202 d~--~dg~~~~~~~~n~~~~~w~~ 223 (563)
+| .|.+.+++..-|..+-.|+.
T Consensus 260 sWc~~D~~lllSsgkD~~ii~wN~ 283 (1049)
T KOG0307|consen 260 SWCPQDPRLLLSSGKDNRIICWNP 283 (1049)
T ss_pred ccCCCCchhhhcccCCCCeeEecC
Confidence 66 44455666666666666654
No 196
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.68 E-value=2.3e-07 Score=101.22 Aligned_cols=101 Identities=19% Similarity=0.298 Sum_probs=69.6
Q ss_pred CCCEEEEEECCCcEEEEcC--CC----ceeEEE---ecCC----CcEEEEEEcCC-CeEEEEeCCCcEEEEc--CCceeE
Q 008510 2 PGVGIISASHDCTIRLWAL--TG----QVLMEM---VGHT----AIVYSIDSHAS-GLIVSGSEDRFAKIWK--DGVCVQ 65 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~--~g----~~i~~l---~gH~----~~V~~v~~~p~-g~l~s~s~D~tvriWd--~~~~~~ 65 (563)
|...+++||.||.||||+- ++ +.+.-+ .++. +.=.-++|... |.+.++|+-+.||||| ...+.+
T Consensus 1122 D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~ 1201 (1387)
T KOG1517|consen 1122 DDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVA 1201 (1387)
T ss_pred chhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEe
Confidence 4568999999999999986 32 233222 2221 11123566665 4788888889999999 445556
Q ss_pred EEe--cCCcEEEEEEcc-CCc-EEEEeCCCcEEEEEcCCCc
Q 008510 66 SIE--HPGCVWDAKFLE-NGD-IVTACSDGVTRIWTVHSDK 102 (563)
Q Consensus 66 ~l~--h~~~V~~v~~~p-~g~-i~sgs~Dg~Irvwd~~~~~ 102 (563)
.+. ....|++++-.- .|+ |+.|..||.||+||.|..-
T Consensus 1202 diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~ 1242 (1387)
T KOG1517|consen 1202 DIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAP 1242 (1387)
T ss_pred ecccCCCccceeecccccCCceEEEeecCCceEEeecccCC
Confidence 665 334677776653 466 8999999999999998653
No 197
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.68 E-value=4.1e-07 Score=93.76 Aligned_cols=100 Identities=21% Similarity=0.367 Sum_probs=72.8
Q ss_pred CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC--eEEEEeCCCcEEE---------------------
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG--LIVSGSEDRFAKI--------------------- 57 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g--~l~s~s~D~tvri--------------------- 57 (563)
.|.++++||.||+||||.+ +|+|++++. -.+.|.||+|+|.+ .++..+.+.++.|
T Consensus 411 ~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~ 489 (733)
T KOG0650|consen 411 SGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDRLEVGPTKELLASA 489 (733)
T ss_pred CcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCceEEeCccccchhhhcchhhhhhcC
Confidence 3789999999999999999 999999876 45689999999976 2333333333444
Q ss_pred ------------Ec-C------CceeEEEecCCcEEEEEEccCCc-EEEEeCC---CcEEEEEcCCCc
Q 008510 58 ------------WK-D------GVCVQSIEHPGCVWDAKFLENGD-IVTACSD---GVTRIWTVHSDK 102 (563)
Q Consensus 58 ------------Wd-~------~~~~~~l~h~~~V~~v~~~p~g~-i~sgs~D---g~Irvwd~~~~~ 102 (563)
|. . ...--++.|+..|..|.|+..|+ |++.+-| ..|.|.++...+
T Consensus 490 ~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~ 557 (733)
T KOG0650|consen 490 PNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRK 557 (733)
T ss_pred CCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEeccccc
Confidence 33 0 00112455888999999999999 8777654 457888887665
No 198
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=98.67 E-value=1.4e-07 Score=96.58 Aligned_cols=58 Identities=28% Similarity=0.456 Sum_probs=50.6
Q ss_pred CCCEEEEEECCCcEEEEcC--CC---------ceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc
Q 008510 2 PGVGIISASHDCTIRLWAL--TG---------QVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK 59 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~--~g---------~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd 59 (563)
.+..+++||-||+||.|++ ++ ....++.||++.|+.+++++.. ++++|+.|||||.|.
T Consensus 355 n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~ 424 (577)
T KOG0642|consen 355 NGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWE 424 (577)
T ss_pred CceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeec
Confidence 4788999999999999965 21 2456789999999999999887 899999999999999
No 199
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.65 E-value=6.9e-08 Score=65.04 Aligned_cols=38 Identities=29% Similarity=0.614 Sum_probs=34.8
Q ss_pred CceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc
Q 008510 22 GQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK 59 (563)
Q Consensus 22 g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd 59 (563)
|+++.++.+|.+.|++++|+|++ .++||+.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 46888999999999999999998 899999999999997
No 200
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=98.63 E-value=9.5e-08 Score=94.20 Aligned_cols=102 Identities=20% Similarity=0.320 Sum_probs=88.7
Q ss_pred CCCEEEEEECCCcEEEEcCC--------C---------ceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CC
Q 008510 2 PGVGIISASHDCTIRLWALT--------G---------QVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DG 61 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~~--------g---------~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~ 61 (563)
+|+.++||+.+|.|.+|... + ...+.+.+|...||.++|+|++ .+++++.|.++++|| .|
T Consensus 76 ~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G 155 (434)
T KOG1009|consen 76 DGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAG 155 (434)
T ss_pred CcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccc
Confidence 57899999999999999753 2 2345678999999999999999 899999999999999 78
Q ss_pred ceeEEEe-cCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCce
Q 008510 62 VCVQSIE-HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKV 103 (563)
Q Consensus 62 ~~~~~l~-h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~ 103 (563)
.....+. |...|..++|.|-+. +++-+.|...+++.....+.
T Consensus 156 ~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~ 199 (434)
T KOG1009|consen 156 QLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQV 199 (434)
T ss_pred eeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeee
Confidence 8777777 888999999999888 99999999888888876653
No 201
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.58 E-value=1.9e-06 Score=84.26 Aligned_cols=102 Identities=15% Similarity=0.267 Sum_probs=80.0
Q ss_pred CCCEEEEEECCCcEEEEcC-CCceeEEEec---CCCcEEEEEEcCCC-eEEE-EeC-CCcEEEEc--CCceeEEEe-cCC
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVLMEMVG---HTAIVYSIDSHASG-LIVS-GSE-DRFAKIWK--DGVCVQSIE-HPG 71 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~g---H~~~V~~v~~~p~g-~l~s-~s~-D~tvriWd--~~~~~~~l~-h~~ 71 (563)
+-++++.|=.+. |.|||+ +-++++++.. |...+.++++++.+ +++- ++. -|.|.||| +-+.+.++. |.+
T Consensus 96 Nr~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~ 174 (391)
T KOG2110|consen 96 NRKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKG 174 (391)
T ss_pred ccceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCC
Confidence 456788887665 999999 7788887764 44556677666666 5543 333 37899999 677778888 999
Q ss_pred cEEEEEEccCCc-EEEEeCCCc-EEEEEcCCCcee
Q 008510 72 CVWDAKFLENGD-IVTACSDGV-TRIWTVHSDKVA 104 (563)
Q Consensus 72 ~V~~v~~~p~g~-i~sgs~Dg~-Irvwd~~~~~~~ 104 (563)
.+-|++|+++|. |||+|..|+ ||||++.+|+..
T Consensus 175 ~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl 209 (391)
T KOG2110|consen 175 PLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKL 209 (391)
T ss_pred ceeEEEECCCCCEEEEeccCceEEEEEEcCCccEe
Confidence 999999999999 999999887 699999988743
No 202
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.54 E-value=1.1e-07 Score=95.22 Aligned_cols=100 Identities=15% Similarity=0.226 Sum_probs=87.4
Q ss_pred EEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCcee-EEEecCCcEEEEEEc
Q 008510 5 GIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCV-QSIEHPGCVWDAKFL 79 (563)
Q Consensus 5 ~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~-~~l~h~~~V~~v~~~ 79 (563)
.|+++|..|-++--|+ .|+.+..+..-.+.+..++.+|-+ .+-.|...|+|.+|. ..+.+ +.+.|.+.|.+|++.
T Consensus 223 LL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~ 302 (545)
T KOG1272|consen 223 LLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVD 302 (545)
T ss_pred eeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEEC
Confidence 4678888899999999 899999998888899999999977 888999999999999 44444 445599999999999
Q ss_pred cCCc-EEEEeCCCcEEEEEcCCCcee
Q 008510 80 ENGD-IVTACSDGVTRIWTVHSDKVA 104 (563)
Q Consensus 80 p~g~-i~sgs~Dg~Irvwd~~~~~~~ 104 (563)
++|+ ++|.|.|..++|||+|.-...
T Consensus 303 ~~G~YMaTtG~Dr~~kIWDlR~~~ql 328 (545)
T KOG1272|consen 303 RGGRYMATTGLDRKVKIWDLRNFYQL 328 (545)
T ss_pred CCCcEEeecccccceeEeeecccccc
Confidence 9999 999999999999999987633
No 203
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=98.53 E-value=1.3e-06 Score=84.04 Aligned_cols=100 Identities=17% Similarity=0.314 Sum_probs=79.1
Q ss_pred CCCEEEEEECCCcEEEEcC--CCce--eEE-----EecCCCcEEEEEEcCCC--eEEEEeCCCcEEEEc--CCceeEEEe
Q 008510 2 PGVGIISASHDCTIRLWAL--TGQV--LME-----MVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK--DGVCVQSIE 68 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~--~g~~--i~~-----l~gH~~~V~~v~~~p~g--~l~s~s~D~tvriWd--~~~~~~~l~ 68 (563)
||..|+.| ....||++|+ .|+- +.+ -.|..+.|.|++|+|.. .++.|+--.++-|+. ....++.+.
T Consensus 169 DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llg 247 (406)
T KOG2919|consen 169 DGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLG 247 (406)
T ss_pred CCCeEeec-ccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeec
Confidence 57777755 5678999998 4532 221 22447889999999965 788888888888887 677788887
Q ss_pred -cCCcEEEEEEccCCc-EEEEeC-CCcEEEEEcCCCc
Q 008510 69 -HPGCVWDAKFLENGD-IVTACS-DGVTRIWTVHSDK 102 (563)
Q Consensus 69 -h~~~V~~v~~~p~g~-i~sgs~-Dg~Irvwd~~~~~ 102 (563)
|.+.|+.+.|.++|+ +.+|+. |..|-.||+|..+
T Consensus 248 gh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~ 284 (406)
T KOG2919|consen 248 GHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSR 284 (406)
T ss_pred ccCCCeeeEEeccCcCeecccccCCCeEEEEeehhcc
Confidence 999999999999999 888765 7899999999776
No 204
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=98.52 E-value=3.5e-07 Score=95.11 Aligned_cols=177 Identities=12% Similarity=0.147 Sum_probs=113.3
Q ss_pred cEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCceeceee
Q 008510 34 IVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLE 108 (563)
Q Consensus 34 ~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~ 108 (563)
.|+.++|-||| .++-+. +..+.++| +|..++++. |.+.|+||+|+.||+ +++|+.|..|-+|+..-.-..
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~L---- 88 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGIL---- 88 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccccccee----
Confidence 79999999999 666554 34689999 899999999 999999999999999 999999999999997543211
Q ss_pred ecccccccceeEEe-------eccCCceEEEeCCCC---------ceeeecccCCCeEEEEecCCCeEEEEEecccceEE
Q 008510 109 LEAYASELSQYKLC-------RKKVGGLKLEDLPGL---------EALQIPGTNAGQTKVVREGDNGVAYSWDMKEQKWD 172 (563)
Q Consensus 109 ~~~~~~~v~~~~~~-------~~~~~~i~~~d~~~~---------~~l~~~g~~dg~~~l~~~~~~~~~~~wd~~~~~w~ 172 (563)
-.+|.+.+.++.+. ....+..-+|..... .+.....+.||++.+.+..++.+. +-+....
T Consensus 89 kYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIs-iRNk~gE--- 164 (1081)
T KOG1538|consen 89 KYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTIS-IRNKNGE--- 164 (1081)
T ss_pred eeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEE-eecCCCC---
Confidence 12333444444332 122234555654322 122334778999988888875543 2221111
Q ss_pred EeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCC-----CeeeeecCCCCCChhHHHHHHHHh
Q 008510 173 KLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDG-----EPTRKLPYNRSDNPYDAADKWLLK 230 (563)
Q Consensus 173 ~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg-----~~~~~~~~n~~~~~w~~a~~f~~~ 230 (563)
...+....|.....||+|.+ +.. ..+....++.+..-|...-+||.+
T Consensus 165 -----------ek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk 217 (1081)
T KOG1538|consen 165 -----------EKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGK 217 (1081)
T ss_pred -----------cceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecc
Confidence 00112223444466788777 321 235666677777777777777664
No 205
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.51 E-value=3.6e-07 Score=90.74 Aligned_cols=66 Identities=20% Similarity=0.456 Sum_probs=56.9
Q ss_pred EEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEE-ecCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCc
Q 008510 36 YSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSI-EHPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDK 102 (563)
Q Consensus 36 ~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l-~h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~ 102 (563)
.+++|+++| .+++++.||++|||+ +-..+..+ .|.+.|.++.|+|||. +++-+.| ..+||+.+++-
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~ 218 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGA 218 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCc
Confidence 578999998 999999999999999 44433333 3889999999999998 8999999 99999999984
No 206
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.49 E-value=6.7e-06 Score=91.45 Aligned_cols=217 Identities=15% Similarity=0.119 Sum_probs=123.4
Q ss_pred CCEEEEEECCCcEEEEcC---CC-----ceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc-CC------ceeEE
Q 008510 3 GVGIISASHDCTIRLWAL---TG-----QVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-DG------VCVQS 66 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~---~g-----~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd-~~------~~~~~ 66 (563)
+.+|+|||.||+||+|+. .| ++..++.--.+.++++.+.+.| .+|.++.||.|++.+ +. .+.+.
T Consensus 1061 ~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ 1140 (1431)
T KOG1240|consen 1061 TSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQV 1140 (1431)
T ss_pred CceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeee
Confidence 479999999999999997 23 2444555456789999999988 899999999999998 32 11122
Q ss_pred E--e--cCC-cEEEEEEccC--C-cEEEEeCCCcEEEEEcCCCceeceeeec-------ccc-cccceeEEeeccCCceE
Q 008510 67 I--E--HPG-CVWDAKFLEN--G-DIVTACSDGVTRIWTVHSDKVADSLELE-------AYA-SELSQYKLCRKKVGGLK 130 (563)
Q Consensus 67 l--~--h~~-~V~~v~~~p~--g-~i~sgs~Dg~Irvwd~~~~~~~~~~~~~-------~~~-~~v~~~~~~~~~~~~i~ 130 (563)
. . ..+ .|..-+|... . .++.+..-+.|..||+++...+-..... .+. +.-.+..+.+...|.+.
T Consensus 1141 ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~ 1220 (1431)
T KOG1240|consen 1141 RIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLV 1220 (1431)
T ss_pred ecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEE
Confidence 1 1 223 3444444432 2 2678888899999999986533211111 111 11123344567779999
Q ss_pred EEeCCCCceeeeccc---------------CCCeEEEEecC-CCeEEEEEecccceEEEeCcEe-eCC-----CCC--CC
Q 008510 131 LEDLPGLEALQIPGT---------------NAGQTKVVREG-DNGVAYSWDMKEQKWDKLGEVV-DGP-----DDG--MN 186 (563)
Q Consensus 131 ~~d~~~~~~l~~~g~---------------~dg~~~l~~~~-~~~~~~~wd~~~~~w~~~g~v~-~~~-----~~~--~~ 186 (563)
+||++-+..+...-+ +...+.+..+. ..+.+-.|++..|....+-..- +.+ ... ..
T Consensus 1221 lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~ 1300 (1431)
T KOG1240|consen 1221 LWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDAR 1300 (1431)
T ss_pred EEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCC
Confidence 999985543322211 11123333333 3345678888777533221110 000 000 00
Q ss_pred ceeecCcccCcEEEEEc-CCCCeeeeecCCCCCChhHHH
Q 008510 187 RPILDGIQYDYVFDVDI-GDGEPTRKLPYNRSDNPYDAA 224 (563)
Q Consensus 187 ~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~~~~~w~~a 224 (563)
+ .+. -......+ +.+...+++.-|..++.|+.+
T Consensus 1301 k---p~~--~~~~~~~~~~~~~~~ltggsd~kIR~wD~~ 1334 (1431)
T KOG1240|consen 1301 K---PDS--LAGISCGVCEKNGFLLTGGSDMKIRKWDPT 1334 (1431)
T ss_pred C---CCc--ccceeeecccCCceeeecCCccceeeccCC
Confidence 0 010 11123334 334457888888889988864
No 207
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=98.48 E-value=1.5e-05 Score=82.17 Aligned_cols=101 Identities=28% Similarity=0.599 Sum_probs=79.2
Q ss_pred CCCEEEEEECCCcEEEEcC-CCc-eeEEEecCCC-cEEEEEE-cCCC--eEEEEeC-CCcEEEEc-C--CceeEEEe-cC
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQ-VLMEMVGHTA-IVYSIDS-HASG--LIVSGSE-DRFAKIWK-D--GVCVQSIE-HP 70 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~-~i~~l~gH~~-~V~~v~~-~p~g--~l~s~s~-D~tvriWd-~--~~~~~~l~-h~ 70 (563)
.+..++.++.|+.+.+|+. .+. .+..+.++.. .+..+.+ ++++ .+..++. |+.+++|+ . ......+. |.
T Consensus 76 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 155 (466)
T COG2319 76 DGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHS 155 (466)
T ss_pred CCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCc
Confidence 3567888889999999999 444 7788887554 7777777 7766 3444445 99999999 4 46666666 88
Q ss_pred CcEEEEEEccCCc-EEEEeC-CCcEEEEEcCCCc
Q 008510 71 GCVWDAKFLENGD-IVTACS-DGVTRIWTVHSDK 102 (563)
Q Consensus 71 ~~V~~v~~~p~g~-i~sgs~-Dg~Irvwd~~~~~ 102 (563)
..|.+++|+|++. +++++. |+.+++|+...++
T Consensus 156 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (466)
T COG2319 156 ESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGK 189 (466)
T ss_pred ccEEEEEECCCCCEEEecCCCCCceEEEEcCCCc
Confidence 9999999999998 777775 9999999999854
No 208
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.45 E-value=1.6e-06 Score=94.90 Aligned_cols=146 Identities=13% Similarity=0.218 Sum_probs=100.5
Q ss_pred CCCEEEEEECCCcEEEEcC--C--CceeEEEecCCCc--EEEEEEcCCC--eEEEEeCCCcEEEEc-CCceeEEE----e
Q 008510 2 PGVGIISASHDCTIRLWAL--T--GQVLMEMVGHTAI--VYSIDSHASG--LIVSGSEDRFAKIWK-DGVCVQSI----E 68 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~--~--g~~i~~l~gH~~~--V~~v~~~p~g--~l~s~s~D~tvriWd-~~~~~~~l----~ 68 (563)
.|+.++.|-.||.||+||. . .-.+..++.|+.. |..+.+.+.| .++||+.||.|++|| ......++ .
T Consensus 1220 ~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~ 1299 (1387)
T KOG1517|consen 1220 HGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVA 1299 (1387)
T ss_pred CCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeee
Confidence 3789999999999999998 2 2367788899988 9999999988 699999999999999 44222222 1
Q ss_pred cC--C-cEEEEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccccceeEEeeccCCceEEEeCCCCceeeecc
Q 008510 69 HP--G-CVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLCRKKVGGLKLEDLPGLEALQIPG 144 (563)
Q Consensus 69 h~--~-~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~d~~~~~~l~~~g 144 (563)
|- + .++++..++..+ ||+|+. +.|+||++...+.-. ++.. -.+.+...+.+....++....+...|
T Consensus 1300 ~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~---~k~n------~~F~~q~~gs~scL~FHP~~~llAaG 1369 (1387)
T KOG1517|consen 1300 HWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNI---IKYN------PGFMGQRIGSVSCLAFHPHRLLLAAG 1369 (1387)
T ss_pred ccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcc---cccC------cccccCcCCCcceeeecchhHhhhhc
Confidence 33 4 499999999988 777777 999999998765211 1100 11122222333344445555555666
Q ss_pred cCCCeEEEEecCC
Q 008510 145 TNAGQTKVVREGD 157 (563)
Q Consensus 145 ~~dg~~~l~~~~~ 157 (563)
..|..+.++.+.+
T Consensus 1370 ~~Ds~V~iYs~~k 1382 (1387)
T KOG1517|consen 1370 SADSTVSIYSCEK 1382 (1387)
T ss_pred cCCceEEEeecCC
Confidence 6666666665543
No 209
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=98.44 E-value=3.3e-05 Score=78.97 Aligned_cols=210 Identities=13% Similarity=0.115 Sum_probs=118.0
Q ss_pred EEEEEECCCcEEEEcC--CCc--eeEEEecCCCcEEEEEEcCCC-eEEE-EeCCCcEEEEc-C--Cce--eEEEecCCcE
Q 008510 5 GIISASHDCTIRLWAL--TGQ--VLMEMVGHTAIVYSIDSHASG-LIVS-GSEDRFAKIWK-D--GVC--VQSIEHPGCV 73 (563)
Q Consensus 5 ~l~s~s~DgtIrlWd~--~g~--~i~~l~gH~~~V~~v~~~p~g-~l~s-~s~D~tvriWd-~--~~~--~~~l~h~~~V 73 (563)
.+++.+.|+.|++|++ +|+ .++++. +.+....++++|++ .++. +..++.|.+|+ + +.. +..+...+..
T Consensus 4 ~y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p 82 (330)
T PRK11028 4 VYIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSP 82 (330)
T ss_pred EEEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCc
Confidence 3455577999999999 354 555554 34556788999998 5544 45688899998 3 332 2333344567
Q ss_pred EEEEEccCCc-EEEEe-CCCcEEEEEcCCCc-ee-ceeeecc----ccc---ccceeE-EeeccCCceEEEeCCCCcee-
Q 008510 74 WDAKFLENGD-IVTAC-SDGVTRIWTVHSDK-VA-DSLELEA----YAS---ELSQYK-LCRKKVGGLKLEDLPGLEAL- 140 (563)
Q Consensus 74 ~~v~~~p~g~-i~sgs-~Dg~Irvwd~~~~~-~~-~~~~~~~----~~~---~v~~~~-~~~~~~~~i~~~d~~~~~~l- 140 (563)
..++++|+|+ +++++ .++.|.+|++.+.. .. ....+.. +.. .-.... .+...++.|.+||+.....+
T Consensus 83 ~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~ 162 (330)
T PRK11028 83 THISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLV 162 (330)
T ss_pred eEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCccc
Confidence 7899999998 65554 48999999997432 11 1111111 110 011233 34455688999998653211
Q ss_pred ----------------eecccCCCeEEEEecCCCeEEEEEecc--cceEEEeCcEeeCCCCCCCceeecCcccCcEEEEE
Q 008510 141 ----------------QIPGTNAGQTKVVREGDNGVAYSWDMK--EQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVD 202 (563)
Q Consensus 141 ----------------~~~g~~dg~~~l~~~~~~~~~~~wd~~--~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd 202 (563)
....+++|.+..+.+.....+..|+.. ++.+..+..+...+.. +.+. .+...+.
T Consensus 163 ~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~------~~~~--~~~~~i~ 234 (330)
T PRK11028 163 AQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPAD------FSDT--RWAADIH 234 (330)
T ss_pred ccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCc------CCCC--ccceeEE
Confidence 112456777665655544555666654 3344333222111100 1111 2334566
Q ss_pred c-CCCCeeeeec-CCCCCChhHH
Q 008510 203 I-GDGEPTRKLP-YNRSDNPYDA 223 (563)
Q Consensus 203 ~-~dg~~~~~~~-~n~~~~~w~~ 223 (563)
+ ++|+.++... .+..+.+|++
T Consensus 235 ~~pdg~~lyv~~~~~~~I~v~~i 257 (330)
T PRK11028 235 ITPDGRHLYACDRTASLISVFSV 257 (330)
T ss_pred ECCCCCEEEEecCCCCeEEEEEE
Confidence 6 7777777663 2344556655
No 210
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.44 E-value=9.9e-06 Score=76.01 Aligned_cols=87 Identities=16% Similarity=0.193 Sum_probs=63.5
Q ss_pred EEEEcC--CCceeEEEec-CCCcEEEEEEcCCC-eEE--EEeCCCcEEEEc-CCceeEEEecCCcEEEEEEccCCc-EEE
Q 008510 15 IRLWAL--TGQVLMEMVG-HTAIVYSIDSHASG-LIV--SGSEDRFAKIWK-DGVCVQSIEHPGCVWDAKFLENGD-IVT 86 (563)
Q Consensus 15 IrlWd~--~g~~i~~l~g-H~~~V~~v~~~p~g-~l~--s~s~D~tvriWd-~~~~~~~l~h~~~V~~v~~~p~g~-i~s 86 (563)
..+|.+ .+..+..+.- +.+.|.+++|+|+| .|+ +|..++.|.+|| .++.+..+. ...+..|.|+|+|+ +++
T Consensus 39 ~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~~i~~~~-~~~~n~i~wsP~G~~l~~ 117 (194)
T PF08662_consen 39 FELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGKKIFSFG-TQPRNTISWSPDGRFLVL 117 (194)
T ss_pred EEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCcccEeEeec-CCCceEEEECCCCCEEEE
Confidence 444544 3444444443 34579999999999 544 345678999999 877777765 45778999999999 777
Q ss_pred EeCC---CcEEEEEcCCCc
Q 008510 87 ACSD---GVTRIWTVHSDK 102 (563)
Q Consensus 87 gs~D---g~Irvwd~~~~~ 102 (563)
|+.+ |.+.+||.++.+
T Consensus 118 ~g~~n~~G~l~~wd~~~~~ 136 (194)
T PF08662_consen 118 AGFGNLNGDLEFWDVRKKK 136 (194)
T ss_pred EEccCCCcEEEEEECCCCE
Confidence 7654 669999999766
No 211
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=98.44 E-value=2.9e-06 Score=83.31 Aligned_cols=80 Identities=13% Similarity=0.276 Sum_probs=68.8
Q ss_pred eEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--------CCceeEEEe--cCCcEEEEEEccCCc-EEEEeCCCc
Q 008510 25 LMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--------DGVCVQSIE--HPGCVWDAKFLENGD-IVTACSDGV 92 (563)
Q Consensus 25 i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--------~~~~~~~l~--h~~~V~~v~~~p~g~-i~sgs~Dg~ 92 (563)
.+-+.+|.++|..+.|+.++ .+++||.|..+++|. ..+.++... |...|.|++|....+ +.+|+.+++
T Consensus 49 qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~ 128 (609)
T KOG4227|consen 49 QKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGT 128 (609)
T ss_pred hhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcce
Confidence 34467999999999999999 899999999999998 346777777 556899999988777 899999999
Q ss_pred EEEEEcCCCcee
Q 008510 93 TRIWTVHSDKVA 104 (563)
Q Consensus 93 Irvwd~~~~~~~ 104 (563)
|-.-|+.+.+.+
T Consensus 129 VI~HDiEt~qsi 140 (609)
T KOG4227|consen 129 VIKHDIETKQSI 140 (609)
T ss_pred eEeeecccceee
Confidence 999999988743
No 212
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.40 E-value=5.3e-07 Score=89.14 Aligned_cols=104 Identities=16% Similarity=0.362 Sum_probs=82.2
Q ss_pred EECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe--cCCcEEEEEEccCC
Q 008510 9 ASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE--HPGCVWDAKFLENG 82 (563)
Q Consensus 9 ~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~--h~~~V~~v~~~p~g 82 (563)
.+.+..+.+|+. +|.+. .+-||-+.++.|+|+||+ .++++..|..|||=. ....+.++- |+.-|..++..++-
T Consensus 128 agD~~~~di~s~~~~~~~-~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~ 206 (390)
T KOG3914|consen 128 AGDVYSFDILSADSGRCE-PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY 206 (390)
T ss_pred cCCceeeeeecccccCcc-hhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc
Confidence 445556666666 34443 456999999999999999 999999999999977 444455554 99999999999886
Q ss_pred cEEEEeCCCcEEEEEcCCCceeceeeecccc
Q 008510 83 DIVTACSDGVTRIWTVHSDKVADSLELEAYA 113 (563)
Q Consensus 83 ~i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~ 113 (563)
.+++||.|+++|+||+++++..+...+..+.
T Consensus 207 ~LlS~sGD~tlr~Wd~~sgk~L~t~dl~s~~ 237 (390)
T KOG3914|consen 207 LLLSGSGDKTLRLWDITSGKLLDTCDLSSLV 237 (390)
T ss_pred eeeecCCCCcEEEEecccCCcccccchhHhh
Confidence 6999999999999999999976555554443
No 213
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=98.39 E-value=2.7e-06 Score=85.92 Aligned_cols=220 Identities=16% Similarity=0.155 Sum_probs=137.3
Q ss_pred CCCEEEEEECCCcEEEEcC-CCceeEEE-ecCCCcEEEEEEcCCC---eEEEEeCCCcEEEEc---CCceeEEEe---cC
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVLMEM-VGHTAIVYSIDSHASG---LIVSGSEDRFAKIWK---DGVCVQSIE---HP 70 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l-~gH~~~V~~v~~~p~g---~l~s~s~D~tvriWd---~~~~~~~l~---h~ 70 (563)
.|+.++|||.|..|.+||+ .+.....+ .||...|..-.|.|.. -+++++.||.||+=. ++.+..+.. |.
T Consensus 153 ~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~ 232 (559)
T KOG1334|consen 153 RGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHE 232 (559)
T ss_pred cCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceeccccc
Confidence 4789999999999999999 66655444 5899999998999963 699999999999877 555544433 99
Q ss_pred CcEEEEEEccCCc--EEEEeCCCcEEEEEcCCCceeceeeecccccc--ccee-----------EEeeccCCceEEEeCC
Q 008510 71 GCVWDAKFLENGD--IVTACSDGVTRIWTVHSDKVADSLELEAYASE--LSQY-----------KLCRKKVGGLKLEDLP 135 (563)
Q Consensus 71 ~~V~~v~~~p~g~--i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~--v~~~-----------~~~~~~~~~i~~~d~~ 135 (563)
+.|.-++.-|+.. +.+++.|+.+.-+|++.+..+.....+..... |.-. ...+..+.-.+++|.+
T Consensus 233 g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R 312 (559)
T KOG1334|consen 233 GPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQR 312 (559)
T ss_pred CccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhccc
Confidence 9999999999876 99999999999999998875543332221111 2211 1123344456666665
Q ss_pred CCceeeecc-------------cCCCeEEEEecCCCe---------EEEEEecccceEEEeCcE-ee-CCCCCCCceeec
Q 008510 136 GLEALQIPG-------------TNAGQTKVVREGDNG---------VAYSWDMKEQKWDKLGEV-VD-GPDDGMNRPILD 191 (563)
Q Consensus 136 ~~~~l~~~g-------------~~dg~~~l~~~~~~~---------~~~~wd~~~~~w~~~g~v-~~-~~~~~~~~~~~~ 191 (563)
....-...| .+-+.+.++.+.+++ -+|.+...-+ .|.- .. .......++.|+
T Consensus 313 ~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~----~G~~p~~~s~~~~~~k~vYK 388 (559)
T KOG1334|consen 313 RIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMG----DGSEPDPSSPREQYVKRVYK 388 (559)
T ss_pred chhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccc----cCCCCCCCcchhhccchhhc
Confidence 321110000 111222233332221 1223311100 0100 00 000112466799
Q ss_pred Cccc-CcEEEEEc--CCCCeeeeecCCCCCChhHHHH
Q 008510 192 GIQY-DYVFDVDI--GDGEPTRKLPYNRSDNPYDAAD 225 (563)
Q Consensus 192 g~~~-d~v~~vd~--~dg~~~~~~~~n~~~~~w~~a~ 225 (563)
||.. ..|-.|.| |..+.+.+++--+.+-+|+-..
T Consensus 389 GHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t 425 (559)
T KOG1334|consen 389 GHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKT 425 (559)
T ss_pred ccccccccceeeeccCccceEEecCccceEEEEecch
Confidence 9854 35778999 6688899999888899998543
No 214
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.38 E-value=9.8e-06 Score=79.19 Aligned_cols=98 Identities=18% Similarity=0.293 Sum_probs=74.6
Q ss_pred EEEEECCCcEEEEcCCCceeEEEec-CCCcEEEEEEcCCC--eEEEEeCCCcEEEEc-C--C-----------ceeEEEe
Q 008510 6 IISASHDCTIRLWALTGQVLMEMVG-HTAIVYSIDSHASG--LIVSGSEDRFAKIWK-D--G-----------VCVQSIE 68 (563)
Q Consensus 6 l~s~s~DgtIrlWd~~g~~i~~l~g-H~~~V~~v~~~p~g--~l~s~s~D~tvriWd-~--~-----------~~~~~l~ 68 (563)
|+++.+|-+||+|+-+-++...++. .+..|.|++|-|.+ .++.|+.-| |.||. + . .+.+.++
T Consensus 113 fava~nddvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~ 191 (445)
T KOG2139|consen 113 FAVATNDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQ 191 (445)
T ss_pred hhhhccCcEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCcccccccccccccccchhhee
Confidence 6889999999999995465555553 34579999999976 677777654 88997 1 1 2345556
Q ss_pred cCC--cEEEEEEccCCc-EEEEeC-CCcEEEEEcCCCcee
Q 008510 69 HPG--CVWDAKFLENGD-IVTACS-DGVTRIWTVHSDKVA 104 (563)
Q Consensus 69 h~~--~V~~v~~~p~g~-i~sgs~-Dg~Irvwd~~~~~~~ 104 (563)
|++ .|.++.|.+||. +++++- |..|+|||.+++...
T Consensus 192 ~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~ 231 (445)
T KOG2139|consen 192 DPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKI 231 (445)
T ss_pred CCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcc
Confidence 555 899999999998 777765 578999999998744
No 215
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.36 E-value=5.5e-06 Score=85.28 Aligned_cols=98 Identities=21% Similarity=0.393 Sum_probs=79.8
Q ss_pred EEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-------cCCc--
Q 008510 6 IISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-------HPGC-- 72 (563)
Q Consensus 6 l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-------h~~~-- 72 (563)
+.+++....|.-.++ .|+.+..|.-..+.+++|.+++.. .+++|++||.|-.|| +.....++. |++.
T Consensus 148 ly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~ 227 (703)
T KOG2321|consen 148 LYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDA 227 (703)
T ss_pred EEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccc
Confidence 344445556788888 899999998888999999999976 889999999999999 444333432 4443
Q ss_pred ---EEEEEEccCCc-EEEEeCCCcEEEEEcCCCce
Q 008510 73 ---VWDAKFLENGD-IVTACSDGVTRIWTVHSDKV 103 (563)
Q Consensus 73 ---V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~ 103 (563)
|++++|..+|- +++|.++|.|.+||+++.+.
T Consensus 228 ~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~p 262 (703)
T KOG2321|consen 228 APSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKP 262 (703)
T ss_pred cCcceEEEecCCceeEEeeccCCcEEEEEcccCCc
Confidence 99999999997 99999999999999999873
No 216
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.35 E-value=9.9e-07 Score=88.51 Aligned_cols=92 Identities=21% Similarity=0.347 Sum_probs=77.6
Q ss_pred EEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEecCCcEEEEEEcc
Q 008510 5 GIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIEHPGCVWDAKFLE 80 (563)
Q Consensus 5 ~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~h~~~V~~v~~~p 80 (563)
.+-.|...|+|.+|+. ..+++..+-.|.++|.+|++.++| +++|+|.|+.|+||| ....++++..+.....++++.
T Consensus 265 Vih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~Sq 344 (545)
T KOG1272|consen 265 VIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQ 344 (545)
T ss_pred eEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCcccccccc
Confidence 4667888999999999 778888888999999999999999 999999999999999 555666666667888899988
Q ss_pred CCcEEEEeCCCcEEEEE
Q 008510 81 NGDIVTACSDGVTRIWT 97 (563)
Q Consensus 81 ~g~i~sgs~Dg~Irvwd 97 (563)
.|.+|. |....|.+|.
T Consensus 345 kglLA~-~~G~~v~iw~ 360 (545)
T KOG1272|consen 345 KGLLAL-SYGDHVQIWK 360 (545)
T ss_pred ccceee-ecCCeeeeeh
Confidence 876554 4556789995
No 217
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.32 E-value=0.00013 Score=77.76 Aligned_cols=90 Identities=12% Similarity=0.156 Sum_probs=68.6
Q ss_pred cEEEEcCCCceeEEEecCCCcEEEEEEcCCC-eEEEEeC---CCcEEEEc-CCceeEEEe-cCCcEEEEEEccCCc-EE-
Q 008510 14 TIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVSGSE---DRFAKIWK-DGVCVQSIE-HPGCVWDAKFLENGD-IV- 85 (563)
Q Consensus 14 tIrlWd~~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~---D~tvriWd-~~~~~~~l~-h~~~V~~v~~~p~g~-i~- 85 (563)
.|.+||.+|...+.+..|...+.+.+|+||| .++..+. +..|.+|| .+...+.+. +++.+.+.+|+|||+ |+
T Consensus 183 ~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~ 262 (435)
T PRK05137 183 RLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVM 262 (435)
T ss_pred EEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEE
Confidence 6888888888778888899999999999999 6666553 46799999 333334454 677888999999998 54
Q ss_pred EEeCCCc--EEEEEcCCCce
Q 008510 86 TACSDGV--TRIWTVHSDKV 103 (563)
Q Consensus 86 sgs~Dg~--Irvwd~~~~~~ 103 (563)
+.+.++. |++||+.++..
T Consensus 263 ~~~~~g~~~Iy~~d~~~~~~ 282 (435)
T PRK05137 263 SLSQGGNTDIYTMDLRSGTT 282 (435)
T ss_pred EEecCCCceEEEEECCCCce
Confidence 5555655 77778887753
No 218
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=98.31 E-value=1.6e-05 Score=85.24 Aligned_cols=211 Identities=11% Similarity=0.047 Sum_probs=124.7
Q ss_pred CCCEEEEEECCCcEEEEcC-CCce--eE----EEecCCCcEEEEEEcCCC---eEEEEeCCCcEEEEc-C-------Cce
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQV--LM----EMVGHTAIVYSIDSHASG---LIVSGSEDRFAKIWK-D-------GVC 63 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~--i~----~l~gH~~~V~~v~~~p~g---~l~s~s~D~tvriWd-~-------~~~ 63 (563)
+..+++.|..+|.|-+||+ .+.. .. ....|..+|..+.|..+- .|+|+|.||.|..|+ + +.+
T Consensus 254 ~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~ 333 (555)
T KOG1587|consen 254 DPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLL 333 (555)
T ss_pred CcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcc
Confidence 4578999999999999999 3221 11 234688999999997653 599999999999999 1 111
Q ss_pred eEEEe------c-CCcEEEEEEccCCc--EEEEeCCCcEEEEEcCCCceecee------eecccccccc--------eeE
Q 008510 64 VQSIE------H-PGCVWDAKFLENGD--IVTACSDGVTRIWTVHSDKVADSL------ELEAYASELS--------QYK 120 (563)
Q Consensus 64 ~~~l~------h-~~~V~~v~~~p~g~--i~sgs~Dg~Irvwd~~~~~~~~~~------~~~~~~~~v~--------~~~ 120 (563)
..... + ...+.+++|.+... ++.|+.+|.|..=+....+..... ....|.+.+. ...
T Consensus 334 ~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~ 413 (555)
T KOG1587|consen 334 LESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKN 413 (555)
T ss_pred cccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccce
Confidence 11111 1 23799999998654 999999999988555544422211 1112222221 122
Q ss_pred EeeccCCceEEEeCC-CCc-----------eeeecccCCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCce
Q 008510 121 LCRKKVGGLKLEDLP-GLE-----------ALQIPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRP 188 (563)
Q Consensus 121 ~~~~~~~~i~~~d~~-~~~-----------~l~~~g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~ 188 (563)
+....|..+++|... ... +.....++-....++....++.+++||.....-.++- ++
T Consensus 414 fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~-----------s~ 482 (555)
T KOG1587|consen 414 FLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVL-----------SQ 482 (555)
T ss_pred eeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcc-----------cc
Confidence 333448899999875 211 1112234443344445555677788886554322221 11
Q ss_pred eecCcccCcEEEEEc-CCCCeeeeecCCCCCChhHHHHH
Q 008510 189 ILDGIQYDYVFDVDI-GDGEPTRKLPYNRSDNPYDAADK 226 (563)
Q Consensus 189 ~~~g~~~d~v~~vd~-~dg~~~~~~~~n~~~~~w~~a~~ 226 (563)
.+. .-....+-+ ++|+.+..+.+++++.+|++.+.
T Consensus 483 ~~~---~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 483 KVC---SPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred ccc---ccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 111 122333444 45777777777777777776544
No 219
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.31 E-value=1.6e-05 Score=77.77 Aligned_cols=133 Identities=20% Similarity=0.241 Sum_probs=89.5
Q ss_pred CCEEEEEECCCcEEEEcC--C---Ccee----------EEEecCCCcEEEEEEcCCC-eEEEEeCC-CcEEEEc--CCce
Q 008510 3 GVGIISASHDCTIRLWAL--T---GQVL----------MEMVGHTAIVYSIDSHASG-LIVSGSED-RFAKIWK--DGVC 63 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~--~---g~~i----------~~l~gH~~~V~~v~~~p~g-~l~s~s~D-~tvriWd--~~~~ 63 (563)
+..|+.|+..| |.+|.. + ++.+ ....|| .+|.++.|.+|| .+++++-+ ..++||| ++.+
T Consensus 153 aselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~ 230 (445)
T KOG2139|consen 153 ASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQK 230 (445)
T ss_pred cceeeeeecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCc
Confidence 45677777666 899987 2 2222 123455 679999999999 88887765 6799999 5555
Q ss_pred eEEEe-cCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccccceeEEeeccCCceEEEeCCCCceee
Q 008510 64 VQSIE-HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLCRKKVGGLKLEDLPGLEALQ 141 (563)
Q Consensus 64 ~~~l~-h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~d~~~~~~l~ 141 (563)
+.... ..+.+.-+.|+|||+ +.++.-|+..|+|....... -.-|-+..+.+..
T Consensus 231 ~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt-------------------------~erw~lgsgrvqt 285 (445)
T KOG2139|consen 231 IPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWT-------------------------KERWILGSGRVQT 285 (445)
T ss_pred ccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccce-------------------------ecceeccCCceee
Confidence 54443 566899999999999 88888999999996543320 1113333333334
Q ss_pred ecccCCCeEEEEecCCCeEEE
Q 008510 142 IPGTNAGQTKVVREGDNGVAY 162 (563)
Q Consensus 142 ~~g~~dg~~~l~~~~~~~~~~ 162 (563)
...+++|.+.++.......+|
T Consensus 286 acWspcGsfLLf~~sgsp~ly 306 (445)
T KOG2139|consen 286 ACWSPCGSFLLFACSGSPRLY 306 (445)
T ss_pred eeecCCCCEEEEEEcCCceEE
Confidence 446677777766665545544
No 220
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.31 E-value=1.7e-06 Score=58.11 Aligned_cols=37 Identities=27% Similarity=0.737 Sum_probs=34.0
Q ss_pred CceeEEEe-cCCcEEEEEEccCCc-EEEEeCCCcEEEEE
Q 008510 61 GVCVQSIE-HPGCVWDAKFLENGD-IVTACSDGVTRIWT 97 (563)
Q Consensus 61 ~~~~~~l~-h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd 97 (563)
+++++++. |...|++++|+|++. +++|+.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 35788888 999999999999988 99999999999997
No 221
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=98.30 E-value=0.00026 Score=72.45 Aligned_cols=99 Identities=16% Similarity=0.221 Sum_probs=67.1
Q ss_pred CCCEEEEE-ECCCcEEEEcCC--Cce--eEEEecCCCcEEEEEEcCCC-eEEEEe-CCCcEEEEc-C--C---ceeEEEe
Q 008510 2 PGVGIISA-SHDCTIRLWALT--GQV--LMEMVGHTAIVYSIDSHASG-LIVSGS-EDRFAKIWK-D--G---VCVQSIE 68 (563)
Q Consensus 2 ~g~~l~s~-s~DgtIrlWd~~--g~~--i~~l~gH~~~V~~v~~~p~g-~l~s~s-~D~tvriWd-~--~---~~~~~l~ 68 (563)
+|++|+.+ ..++.|.+|+++ |.. +.+.. ..+....++++|+| .+++++ .++.|.+|+ + + +.++.+.
T Consensus 45 d~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~ 123 (330)
T PRK11028 45 DKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE 123 (330)
T ss_pred CCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc
Confidence 46776555 458889999983 432 22222 23346789999999 555554 478999998 3 3 2334343
Q ss_pred cCCcEEEEEEccCCc-E-EEEeCCCcEEEEEcCCC
Q 008510 69 HPGCVWDAKFLENGD-I-VTACSDGVTRIWTVHSD 101 (563)
Q Consensus 69 h~~~V~~v~~~p~g~-i-~sgs~Dg~Irvwd~~~~ 101 (563)
+.....+++++|+|+ + ++...++.|++||+++.
T Consensus 124 ~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~ 158 (330)
T PRK11028 124 GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDD 158 (330)
T ss_pred CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCC
Confidence 434577889999998 5 55566799999999763
No 222
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=98.27 E-value=7.2e-07 Score=83.52 Aligned_cols=58 Identities=26% Similarity=0.335 Sum_probs=43.6
Q ss_pred CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK 59 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd 59 (563)
|++.+||+|+|+.||+|+. +..++..++-|.+.|.+++|+|+. .++++|.|.+|-+|+
T Consensus 262 D~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWk 321 (323)
T KOG0322|consen 262 DGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWK 321 (323)
T ss_pred CCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeee
Confidence 5677777777777777777 777777777777777777777774 777777777777775
No 223
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.25 E-value=0.00014 Score=75.28 Aligned_cols=167 Identities=13% Similarity=0.121 Sum_probs=104.7
Q ss_pred CEE-EEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEecCCcEEEEEE
Q 008510 4 VGI-ISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIEHPGCVWDAKF 78 (563)
Q Consensus 4 ~~l-~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~h~~~V~~v~~ 78 (563)
+++ ++-..++.|.+.|. +.+.+.++......-..+.++||| ++..++.|+.|.++| +.+.+.++.......++++
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~ 85 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAV 85 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEE
Confidence 455 45667899999999 789999998665554567899999 777788999999999 8889999987678899999
Q ss_pred ccCCc-EEEE-eCCCcEEEEEcCCCceeceeeeccccc-------------ccc-eeEEeeccCCceEEEeCCCCceeee
Q 008510 79 LENGD-IVTA-CSDGVTRIWTVHSDKVADSLELEAYAS-------------ELS-QYKLCRKKVGGLKLEDLPGLEALQI 142 (563)
Q Consensus 79 ~p~g~-i~sg-s~Dg~Irvwd~~~~~~~~~~~~~~~~~-------------~v~-~~~~~~~~~~~i~~~d~~~~~~l~~ 142 (563)
++||+ ++++ -.++.+.++|.++.+............ ... .+.++....+.|.+-|......+..
T Consensus 86 s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~ 165 (369)
T PF02239_consen 86 SPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKV 165 (369)
T ss_dssp --TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEE
T ss_pred cCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccce
Confidence 99999 5544 468999999999887554433322211 111 1333444456666666654432211
Q ss_pred ------------cccCCCeEEEEecCCCeEEEEEecccce
Q 008510 143 ------------PGTNAGQTKVVREGDNGVAYSWDMKEQK 170 (563)
Q Consensus 143 ------------~g~~dg~~~l~~~~~~~~~~~wd~~~~~ 170 (563)
...++|.+.+........+..+|..++.
T Consensus 166 ~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k 205 (369)
T PF02239_consen 166 TTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGK 205 (369)
T ss_dssp EEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTE
T ss_pred eeecccccccccccCcccceeeecccccceeEEEeeccce
Confidence 1345666666644433455566666554
No 224
>PRK01742 tolB translocation protein TolB; Provisional
Probab=98.22 E-value=6.5e-05 Score=79.79 Aligned_cols=96 Identities=17% Similarity=0.312 Sum_probs=68.1
Q ss_pred CCCEEEEEECC---CcEEEEcC-CCc--eeEEEecCCCcEEEEEEcCCC-eEEEE-eCCCcEEEEc---CCceeEEEe-c
Q 008510 2 PGVGIISASHD---CTIRLWAL-TGQ--VLMEMVGHTAIVYSIDSHASG-LIVSG-SEDRFAKIWK---DGVCVQSIE-H 69 (563)
Q Consensus 2 ~g~~l~s~s~D---gtIrlWd~-~g~--~i~~l~gH~~~V~~v~~~p~g-~l~s~-s~D~tvriWd---~~~~~~~l~-h 69 (563)
||+.++.++.+ .+|++||+ +|+ ++..+.+|. .+++|+||| .++.+ +.|+.+.||. .+.....+. +
T Consensus 214 DG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~---~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~ 290 (429)
T PRK01742 214 DGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHN---GAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQLTSG 290 (429)
T ss_pred CCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCcc---CceeECCCCCEEEEEEecCCcEEEEEEECCCCCeEeeccC
Confidence 57888888754 36999999 554 344444543 468999999 66655 5788877774 444455555 6
Q ss_pred CCcEEEEEEccCCc-EEEEe-CCCcEEEEEcCC
Q 008510 70 PGCVWDAKFLENGD-IVTAC-SDGVTRIWTVHS 100 (563)
Q Consensus 70 ~~~V~~v~~~p~g~-i~sgs-~Dg~Irvwd~~~ 100 (563)
...+.+.+|+|||+ |+.++ .+|..++|+++.
T Consensus 291 ~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~ 323 (429)
T PRK01742 291 AGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSA 323 (429)
T ss_pred CCCcCCEEECCCCCEEEEEECCCCCceEEEEEC
Confidence 66788999999998 66544 578888888753
No 225
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=98.22 E-value=4.4e-05 Score=82.52 Aligned_cols=66 Identities=18% Similarity=0.345 Sum_probs=52.7
Q ss_pred CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC----eEEEEeCCCcEEEEc--CCceeEEEe
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG----LIVSGSEDRFAKIWK--DGVCVQSIE 68 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g----~l~s~s~D~tvriWd--~~~~~~~l~ 68 (563)
|++.++.+. +.+|+||.. +|+|++.+.+|...+.++.+.|.. ++++++.||+|++|| .+..+.++.
T Consensus 27 D~k~l~~~~-~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~ 99 (792)
T KOG1963|consen 27 DAKFLFLCT-GNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFD 99 (792)
T ss_pred CCcEEEEee-CCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEe
Confidence 345555454 668999999 999999999999999999998864 577999999999999 555555543
No 226
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=98.21 E-value=7.8e-06 Score=87.52 Aligned_cols=100 Identities=19% Similarity=0.246 Sum_probs=76.2
Q ss_pred CCEEEEEECCCcEEEEc---CC--C----ceeEEEecCCCcEEEEEEcCCC--eEEEEeCCCcEEEEc---CCceeEEEe
Q 008510 3 GVGIISASHDCTIRLWA---LT--G----QVLMEMVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK---DGVCVQSIE 68 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd---~~--g----~~i~~l~gH~~~V~~v~~~p~g--~l~s~s~D~tvriWd---~~~~~~~l~ 68 (563)
-..|+.|+.+|.|..=+ .+ . +....+..|.+.|+++.++|-+ .|.|+| |-+||||. ...++..+.
T Consensus 360 p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~ 438 (555)
T KOG1587|consen 360 PNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLD 438 (555)
T ss_pred CceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhh
Confidence 35789999999887722 22 2 2244566789999999999987 555655 99999999 233444444
Q ss_pred -cCCcEEEEEEccCCc--EEEEeCCCcEEEEEcCCCce
Q 008510 69 -HPGCVWDAKFLENGD--IVTACSDGVTRIWTVHSDKV 103 (563)
Q Consensus 69 -h~~~V~~v~~~p~g~--i~sgs~Dg~Irvwd~~~~~~ 103 (563)
+...|.+++|+|.-- ++++..||.+.+||+.....
T Consensus 439 ~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~ 476 (555)
T KOG1587|consen 439 SSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDE 476 (555)
T ss_pred hccceeeeeEEcCcCceEEEEEcCCCceehhhhhcccc
Confidence 777899999999754 89999999999999987653
No 227
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.20 E-value=8.3e-05 Score=78.93 Aligned_cols=100 Identities=7% Similarity=0.133 Sum_probs=62.6
Q ss_pred CCCEEEEEEC---CCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEE-EEeCCC--cEEEEc-CCceeEEEe-cCC
Q 008510 2 PGVGIISASH---DCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIV-SGSEDR--FAKIWK-DGVCVQSIE-HPG 71 (563)
Q Consensus 2 ~g~~l~s~s~---DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~-s~s~D~--tvriWd-~~~~~~~l~-h~~ 71 (563)
||+.++..+. +..|.+|++ +|+. ..+..+.+.+.+.+|+||| .++ +.+.++ .|.+|| .+.....+. +..
T Consensus 209 DG~~la~~s~~~g~~~i~i~dl~~G~~-~~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~ 287 (429)
T PRK03629 209 DGSKLAYVTFESGRSALVIQTLANGAV-RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRS 287 (429)
T ss_pred CCCEEEEEEecCCCcEEEEEECCCCCe-EEccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCCCC
Confidence 5777776543 457999999 5543 2333333445578999999 555 445555 488888 333334444 555
Q ss_pred cEEEEEEccCCc-EEEEeCC-CcEEEE--EcCCCc
Q 008510 72 CVWDAKFLENGD-IVTACSD-GVTRIW--TVHSDK 102 (563)
Q Consensus 72 ~V~~v~~~p~g~-i~sgs~D-g~Irvw--d~~~~~ 102 (563)
.+....|+|+|+ |+..+.+ +...+| |+.++.
T Consensus 288 ~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~ 322 (429)
T PRK03629 288 NNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGA 322 (429)
T ss_pred CcCceEECCCCCEEEEEeCCCCCceEEEEECCCCC
Confidence 788999999999 7666553 444454 555543
No 228
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.19 E-value=8.9e-05 Score=78.68 Aligned_cols=97 Identities=18% Similarity=0.253 Sum_probs=67.1
Q ss_pred CCCEEEEEECC---CcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEE-EEeCCCcEEEEc---CCceeEEEe-cCC
Q 008510 2 PGVGIISASHD---CTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIV-SGSEDRFAKIWK---DGVCVQSIE-HPG 71 (563)
Q Consensus 2 ~g~~l~s~s~D---gtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~-s~s~D~tvriWd---~~~~~~~l~-h~~ 71 (563)
||+.++..+.+ ..|.+||+ +|+.. .+....+.+.+.+|+||| .++ +.+.|+...||. .+...+.+. +..
T Consensus 206 DG~~la~~s~~~~~~~I~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~ 284 (427)
T PRK02889 206 DGTKLAYVSFESKKPVVYVHDLATGRRR-VVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRLTQSSG 284 (427)
T ss_pred CCCEEEEEEccCCCcEEEEEECCCCCEE-EeecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCCcEECCCCCC
Confidence 57788877753 35999999 56543 344445566789999999 554 678888888887 444455565 555
Q ss_pred cEEEEEEccCCc-EEEEeC-CCcEEEEEcC
Q 008510 72 CVWDAKFLENGD-IVTACS-DGVTRIWTVH 99 (563)
Q Consensus 72 ~V~~v~~~p~g~-i~sgs~-Dg~Irvwd~~ 99 (563)
.+.+..|+|||+ |+..+. +|...+|.++
T Consensus 285 ~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~ 314 (427)
T PRK02889 285 IDTEPFFSPDGRSIYFTSDRGGAPQIYRMP 314 (427)
T ss_pred CCcCeEEcCCCCEEEEEecCCCCcEEEEEE
Confidence 667889999998 665543 4666666553
No 229
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.16 E-value=3.8e-05 Score=75.89 Aligned_cols=199 Identities=16% Similarity=0.171 Sum_probs=124.2
Q ss_pred CCEEEEEECCCcEEEEcCC-----CceeEEEecCCCcEEEEEEcCCC--eEEEEeCC--CcEEEEcCCceeEEEe-----
Q 008510 3 GVGIISASHDCTIRLWALT-----GQVLMEMVGHTAIVYSIDSHASG--LIVSGSED--RFAKIWKDGVCVQSIE----- 68 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~~-----g~~i~~l~gH~~~V~~v~~~p~g--~l~s~s~D--~tvriWd~~~~~~~l~----- 68 (563)
+..+.+|-.+|.+.+|... ...+..+..| ..++.|.-++.. .+++||.. ..++|||..++.+.++
T Consensus 115 dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvp 193 (412)
T KOG3881|consen 115 DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVP 193 (412)
T ss_pred CCEEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCC
Confidence 3468889999999999983 3455555554 557777777764 67779998 8899999323355554
Q ss_pred -------cCCcEEEEEEccC--Cc-EEEEeCCCcEEEEEcCCCceeceeeecccccccceeEEeeccCCceEEEeCCCCc
Q 008510 69 -------HPGCVWDAKFLEN--GD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLCRKKVGGLKLEDLPGLE 138 (563)
Q Consensus 69 -------h~~~V~~v~~~p~--g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~d~~~~~ 138 (563)
-|-.+.++.|.+. .. ++++..-+.+|+||.+.+|. .+..+|+....
T Consensus 194 nD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRR------------------------PV~~fd~~E~~ 249 (412)
T KOG3881|consen 194 NDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRR------------------------PVAQFDFLENP 249 (412)
T ss_pred CccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCc------------------------ceeEeccccCc
Confidence 2234557888876 34 99999999999999998771 22333443333
Q ss_pred eeeecccCCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeeeecCCCC
Q 008510 139 ALQIPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRKLPYNRS 217 (563)
Q Consensus 139 ~l~~~g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~~ 217 (563)
+....-.++|...++. +..+....+|.+.+.-. + ..+.|-. +-+-++.. +.+..+++.+-|+.
T Consensus 250 is~~~l~p~gn~Iy~g-n~~g~l~~FD~r~~kl~--g------------~~~kg~t-Gsirsih~hp~~~~las~GLDRy 313 (412)
T KOG3881|consen 250 ISSTGLTPSGNFIYTG-NTKGQLAKFDLRGGKLL--G------------CGLKGIT-GSIRSIHCHPTHPVLASCGLDRY 313 (412)
T ss_pred ceeeeecCCCcEEEEe-cccchhheecccCceee--c------------cccCCcc-CCcceEEEcCCCceEEeecccee
Confidence 3333334445443333 33344456665554211 1 1133322 34667777 55677899999999
Q ss_pred CChhHHHHHHHHhcCCCcccHHHHHHHHH
Q 008510 218 DNPYDAADKWLLKENLPFSYRQQIVEFIL 246 (563)
Q Consensus 218 ~~~w~~a~~f~~~~~l~~~~~~~v~~fi~ 246 (563)
++++++..+- -|...|+.+-.+||.
T Consensus 314 vRIhD~ktrk----ll~kvYvKs~lt~il 338 (412)
T KOG3881|consen 314 VRIHDIKTRK----LLHKVYVKSRLTFIL 338 (412)
T ss_pred EEEeecccch----hhhhhhhhccccEEE
Confidence 9999987532 234455555555554
No 230
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.16 E-value=8.5e-06 Score=83.31 Aligned_cols=100 Identities=24% Similarity=0.349 Sum_probs=75.2
Q ss_pred CCEEEEEECCCcEEEEcC--CCc------eeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe---
Q 008510 3 GVGIISASHDCTIRLWAL--TGQ------VLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE--- 68 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~--~g~------~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~--- 68 (563)
.+.|+++|.|.|||+|++ +|+ |..++..|+..|.++.|..+- .+++ .|+-+.+|| .++.+..+.
T Consensus 747 ENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD~giHlWDPFigr~Laq~~dap 824 (1034)
T KOG4190|consen 747 ENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS--CDGGIHLWDPFIGRLLAQMEDAP 824 (1034)
T ss_pred ccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee--ccCcceeecccccchhHhhhcCc
Confidence 467999999999999998 342 677899999999999998886 5554 589999999 666554332
Q ss_pred cCCcEEEEEEccC-Cc--E-EEEeCCCcEEEEEcCCCcee
Q 008510 69 HPGCVWDAKFLEN-GD--I-VTACSDGVTRIWTVHSDKVA 104 (563)
Q Consensus 69 h~~~V~~v~~~p~-g~--i-~sgs~Dg~Irvwd~~~~~~~ 104 (563)
..+.+..+...++ .+ + +-++...+|+++|.|...+.
T Consensus 825 k~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~ 864 (1034)
T KOG4190|consen 825 KEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWT 864 (1034)
T ss_pred ccCCCceeEecccCcchheeeeccchhhheeeecccccce
Confidence 2335666666675 33 3 44467899999999988744
No 231
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.15 E-value=0.0001 Score=78.48 Aligned_cols=90 Identities=13% Similarity=0.131 Sum_probs=68.0
Q ss_pred CcEEEEcCCCceeEEEecCCCcEEEEEEcCCC-eEEEEeCC---CcEEEEc--CCceeEEEe-cCCcEEEEEEccCCc-E
Q 008510 13 CTIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVSGSED---RFAKIWK--DGVCVQSIE-HPGCVWDAKFLENGD-I 84 (563)
Q Consensus 13 gtIrlWd~~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D---~tvriWd--~~~~~~~l~-h~~~V~~v~~~p~g~-i 84 (563)
.+|.+||.+|...+.+..|...+.+.+|+|+| .++.++.+ ..|.+|+ +++. +.+. +++...+.+|+|+|+ +
T Consensus 184 ~~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~-~~l~~~~g~~~~~~~SpDG~~l 262 (433)
T PRK04922 184 YALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQR-ELVASFRGINGAPSFSPDGRRL 262 (433)
T ss_pred EEEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCE-EEeccCCCCccCceECCCCCEE
Confidence 36899999887777788888889999999999 77766643 4699999 4444 3444 556667899999998 5
Q ss_pred E-EEeCCC--cEEEEEcCCCce
Q 008510 85 V-TACSDG--VTRIWTVHSDKV 103 (563)
Q Consensus 85 ~-sgs~Dg--~Irvwd~~~~~~ 103 (563)
+ +.+.+| .|++||+.+++.
T Consensus 263 ~~~~s~~g~~~Iy~~d~~~g~~ 284 (433)
T PRK04922 263 ALTLSRDGNPEIYVMDLGSRQL 284 (433)
T ss_pred EEEEeCCCCceEEEEECCCCCe
Confidence 4 555555 599999988763
No 232
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.10 E-value=0.00036 Score=74.30 Aligned_cols=100 Identities=15% Similarity=0.126 Sum_probs=71.2
Q ss_pred CCCEEEEEEC---CCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eE-EEEeCCCc--EEEEc-CCceeEEEe-cCC
Q 008510 2 PGVGIISASH---DCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LI-VSGSEDRF--AKIWK-DGVCVQSIE-HPG 71 (563)
Q Consensus 2 ~g~~l~s~s~---DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l-~s~s~D~t--vriWd-~~~~~~~l~-h~~ 71 (563)
||+.|+..+. +..|.+||+ +|+. ..+..+.+.+.+.+|+||| .+ ++.+.|+. |.+|| .+.....+. ++.
T Consensus 212 DG~~lay~s~~~g~~~i~~~dl~~g~~-~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~ 290 (435)
T PRK05137 212 NRQEITYMSYANGRPRVYLLDLETGQR-ELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPA 290 (435)
T ss_pred CCCEEEEEEecCCCCEEEEEECCCCcE-EEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceEEccCCCC
Confidence 5778887764 468999999 5544 4566677788899999999 54 56777776 55557 444445565 666
Q ss_pred cEEEEEEccCCc-EEEEeC-CC--cEEEEEcCCCc
Q 008510 72 CVWDAKFLENGD-IVTACS-DG--VTRIWTVHSDK 102 (563)
Q Consensus 72 ~V~~v~~~p~g~-i~sgs~-Dg--~Irvwd~~~~~ 102 (563)
...+.+|+|||+ |+..+. +| .|++||..++.
T Consensus 291 ~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~ 325 (435)
T PRK05137 291 IDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSN 325 (435)
T ss_pred ccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCC
Confidence 778899999998 766553 33 57788877654
No 233
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.08 E-value=8.7e-05 Score=71.64 Aligned_cols=59 Identities=24% Similarity=0.360 Sum_probs=52.7
Q ss_pred CCCCEEEEEECCCc-EEEEcC-CCceeEEEecC--CCcEEEEEEcCCC-eEEEEeCCCcEEEEc
Q 008510 1 MPGVGIISASHDCT-IRLWAL-TGQVLMEMVGH--TAIVYSIDSHASG-LIVSGSEDRFAKIWK 59 (563)
Q Consensus 1 ~~g~~l~s~s~Dgt-IrlWd~-~g~~i~~l~gH--~~~V~~v~~~p~g-~l~s~s~D~tvriWd 59 (563)
++|..+||||..|| |||||. +|+.+.++..- ...|||++|+|++ .++.+|+-||+.|+.
T Consensus 191 ~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~ 254 (346)
T KOG2111|consen 191 LQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFS 254 (346)
T ss_pred CCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEE
Confidence 47999999999998 899999 99999998642 3579999999999 899999999999998
No 234
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.07 E-value=2.3e-05 Score=77.44 Aligned_cols=100 Identities=13% Similarity=0.174 Sum_probs=87.5
Q ss_pred CCEEEEEECCCcEEEEcC--CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEE-Ee-cCCcEEE
Q 008510 3 GVGIISASHDCTIRLWAL--TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQS-IE-HPGCVWD 75 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~--~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~-l~-h~~~V~~ 75 (563)
...|++|..-+.+|+||. ..+++.++.--+..|.++...|+| .+.+|..-+.+..+| .++.+.. +. ..+++++
T Consensus 216 ~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirs 295 (412)
T KOG3881|consen 216 NYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRS 295 (412)
T ss_pred CceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcce
Confidence 367999999999999999 567899988888999999999999 888999999999999 4444443 44 6789999
Q ss_pred EEEccCCc-EEEEeCCCcEEEEEcCCCc
Q 008510 76 AKFLENGD-IVTACSDGVTRIWTVHSDK 102 (563)
Q Consensus 76 v~~~p~g~-i~sgs~Dg~Irvwd~~~~~ 102 (563)
+..+|++. ++++|.|..|||+|+.+.+
T Consensus 296 ih~hp~~~~las~GLDRyvRIhD~ktrk 323 (412)
T KOG3881|consen 296 IHCHPTHPVLASCGLDRYVRIHDIKTRK 323 (412)
T ss_pred EEEcCCCceEEeeccceeEEEeecccch
Confidence 99999998 8999999999999999965
No 235
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.06 E-value=0.00037 Score=74.16 Aligned_cols=100 Identities=16% Similarity=0.136 Sum_probs=67.3
Q ss_pred CCCEEEEEECC---CcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eE-EEEeCCC--cEEEEc-CCceeEEEe-cCC
Q 008510 2 PGVGIISASHD---CTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LI-VSGSEDR--FAKIWK-DGVCVQSIE-HPG 71 (563)
Q Consensus 2 ~g~~l~s~s~D---gtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l-~s~s~D~--tvriWd-~~~~~~~l~-h~~ 71 (563)
||+.++.++.+ ..|.+||+ +|+. ..+..+.+...+.+|+|+| .+ ++.+.++ .|.+|| .+..++.+. +..
T Consensus 214 Dg~~la~~s~~~~~~~l~~~dl~~g~~-~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~ 292 (433)
T PRK04922 214 DGKKLAYVSFERGRSAIYVQDLATGQR-ELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTNHFG 292 (433)
T ss_pred CCCEEEEEecCCCCcEEEEEECCCCCE-EEeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEECccCCC
Confidence 57888887743 46999999 5554 3444555556688999999 54 4666666 488888 433344455 555
Q ss_pred cEEEEEEccCCc-EEEEeC-CCc--EEEEEcCCCc
Q 008510 72 CVWDAKFLENGD-IVTACS-DGV--TRIWTVHSDK 102 (563)
Q Consensus 72 ~V~~v~~~p~g~-i~sgs~-Dg~--Irvwd~~~~~ 102 (563)
.....+|+|||+ |+.++. +|. |+++|+.+++
T Consensus 293 ~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~ 327 (433)
T PRK04922 293 IDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGS 327 (433)
T ss_pred CccceEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 667889999998 766553 444 6666666654
No 236
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.05 E-value=0.00027 Score=74.71 Aligned_cols=100 Identities=19% Similarity=0.217 Sum_probs=66.8
Q ss_pred CCCEEEEEECC---CcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eE-EEEeCCC--cEEEEc-CCceeEEEe-cCC
Q 008510 2 PGVGIISASHD---CTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LI-VSGSEDR--FAKIWK-DGVCVQSIE-HPG 71 (563)
Q Consensus 2 ~g~~l~s~s~D---gtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l-~s~s~D~--tvriWd-~~~~~~~l~-h~~ 71 (563)
||++++.++.+ ..|++|++ +|+. ..+..+.+.+.+++|+|+| .+ ++.+.++ .|.+|+ .+...+.+. +..
T Consensus 200 dg~~la~~~~~~~~~~i~v~d~~~g~~-~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~ 278 (417)
T TIGR02800 200 DGQKLAYVSFESGKPEIYVQDLATGQR-EKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPG 278 (417)
T ss_pred CCCEEEEEEcCCCCcEEEEEECCCCCE-EEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEECCCCCC
Confidence 57778777654 47999999 5544 3445566777889999998 54 4555555 477788 444444454 555
Q ss_pred cEEEEEEccCCc-EEEEeC-CC--cEEEEEcCCCc
Q 008510 72 CVWDAKFLENGD-IVTACS-DG--VTRIWTVHSDK 102 (563)
Q Consensus 72 ~V~~v~~~p~g~-i~sgs~-Dg--~Irvwd~~~~~ 102 (563)
......|+|+|+ |+..+. ++ .|+++|+.+++
T Consensus 279 ~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~ 313 (417)
T TIGR02800 279 IDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE 313 (417)
T ss_pred CCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 566788999998 665554 33 57777776654
No 237
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.00 E-value=0.00024 Score=75.42 Aligned_cols=86 Identities=15% Similarity=0.194 Sum_probs=63.5
Q ss_pred CcEEEEcCCCceeEEEecCCCcEEEEEEcCCC-eEEEEeCC---CcEEEEc--CCceeEEEe-cCCcEEEEEEccCCc-E
Q 008510 13 CTIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVSGSED---RFAKIWK--DGVCVQSIE-HPGCVWDAKFLENGD-I 84 (563)
Q Consensus 13 gtIrlWd~~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D---~tvriWd--~~~~~~~l~-h~~~V~~v~~~p~g~-i 84 (563)
..|.+||.+|...+.+..|...+.+.+|+||| .++..+.+ ..|.+|| +++.. .+. .++.+.+.+|+|||+ |
T Consensus 176 ~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~l 254 (427)
T PRK02889 176 YQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRR-VVANFKGSNSAPAWSPDGRTL 254 (427)
T ss_pred cEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEE-EeecCCCCccceEECCCCCEE
Confidence 35777777887777777888899999999999 66665533 3589999 45543 344 556778999999998 6
Q ss_pred E-EEeCCCcEEEEEcC
Q 008510 85 V-TACSDGVTRIWTVH 99 (563)
Q Consensus 85 ~-sgs~Dg~Irvwd~~ 99 (563)
+ +.+.||..++|.++
T Consensus 255 a~~~~~~g~~~Iy~~d 270 (427)
T PRK02889 255 AVALSRDGNSQIYTVN 270 (427)
T ss_pred EEEEccCCCceEEEEE
Confidence 5 56778877777653
No 238
>PRK03629 tolB translocation protein TolB; Provisional
Probab=97.98 E-value=0.00061 Score=72.33 Aligned_cols=89 Identities=15% Similarity=0.117 Sum_probs=63.5
Q ss_pred cEEEEcCCCceeEEEecCCCcEEEEEEcCCC-eEEEEe---CCCcEEEEc--CCceeEEEecCCcEEEEEEccCCc-EEE
Q 008510 14 TIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVSGS---EDRFAKIWK--DGVCVQSIEHPGCVWDAKFLENGD-IVT 86 (563)
Q Consensus 14 tIrlWd~~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s---~D~tvriWd--~~~~~~~l~h~~~V~~v~~~p~g~-i~s 86 (563)
.|.+||.+|...+.+..+...+.+.+|+||| .++..+ .+..+.+|+ +++..+....++.+.+++|+|||+ |+.
T Consensus 180 ~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~ 259 (429)
T PRK03629 180 ELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAF 259 (429)
T ss_pred eEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEE
Confidence 6889998776666677778889999999999 666443 234688898 444333223555566789999998 654
Q ss_pred E-eCCC--cEEEEEcCCCc
Q 008510 87 A-CSDG--VTRIWTVHSDK 102 (563)
Q Consensus 87 g-s~Dg--~Irvwd~~~~~ 102 (563)
. +.+| .|++||+.+++
T Consensus 260 ~~~~~g~~~I~~~d~~tg~ 278 (429)
T PRK03629 260 ALSKTGSLNLYVMDLASGQ 278 (429)
T ss_pred EEcCCCCcEEEEEECCCCC
Confidence 3 4455 48889998775
No 239
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=97.96 E-value=0.00092 Score=70.65 Aligned_cols=89 Identities=12% Similarity=0.132 Sum_probs=65.1
Q ss_pred cEEEEcCCCceeEEEecCCCcEEEEEEcCCC-eEEEEeCC---CcEEEEc--CCceeEEEecCCcEEEEEEccCCc-EE-
Q 008510 14 TIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVSGSED---RFAKIWK--DGVCVQSIEHPGCVWDAKFLENGD-IV- 85 (563)
Q Consensus 14 tIrlWd~~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D---~tvriWd--~~~~~~~l~h~~~V~~v~~~p~g~-i~- 85 (563)
.|.++|.+|...+.+..|...+.+.+|+|+| .++.++.+ ..|++|+ +++......+.+.+.+++|+|+|+ |+
T Consensus 171 ~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~ 250 (417)
T TIGR02800 171 ELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAV 250 (417)
T ss_pred eEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEE
Confidence 5778888776667777788889999999999 66665543 4799999 454433333666778899999998 65
Q ss_pred EEeCCC--cEEEEEcCCCc
Q 008510 86 TACSDG--VTRIWTVHSDK 102 (563)
Q Consensus 86 sgs~Dg--~Irvwd~~~~~ 102 (563)
+.+.++ .|++||+.++.
T Consensus 251 ~~~~~~~~~i~~~d~~~~~ 269 (417)
T TIGR02800 251 SLSKDGNPDIYVMDLDGKQ 269 (417)
T ss_pred EECCCCCccEEEEECCCCC
Confidence 444444 58888988765
No 240
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.93 E-value=4.6e-05 Score=80.73 Aligned_cols=213 Identities=13% Similarity=0.196 Sum_probs=133.3
Q ss_pred CEEEEEECCCcEEEEcC----CCceeEEEecCCCcEEEEEEcCCC--eEEEEeCCCcEEEEc---CCceeEEEe-cCCcE
Q 008510 4 VGIISASHDCTIRLWAL----TGQVLMEMVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK---DGVCVQSIE-HPGCV 73 (563)
Q Consensus 4 ~~l~s~s~DgtIrlWd~----~g~~i~~l~gH~~~V~~v~~~p~g--~l~s~s~D~tvriWd---~~~~~~~l~-h~~~V 73 (563)
..+++.++-.+| +|++ +....-.+.||+..|..+.|+|.. .+++|+-|..|..|| -...+.... -....
T Consensus 83 ~wiVsts~qkai-iwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~a 161 (1081)
T KOG0309|consen 83 YWIVSTSNQKAI-IWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAA 161 (1081)
T ss_pred eeEEecCcchhh-hhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccC
Confidence 356777766654 8998 234556678999999999999986 899999999999999 344555554 22356
Q ss_pred EEEEEcc-CCcEEEEeCCCcEEEEEcCCCceeceeeeccccccc---------ceeEEeeccCCceEEEeCCCCc----e
Q 008510 74 WDAKFLE-NGDIVTACSDGVTRIWTVHSDKVADSLELEAYASEL---------SQYKLCRKKVGGLKLEDLPGLE----A 139 (563)
Q Consensus 74 ~~v~~~p-~g~i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v---------~~~~~~~~~~~~i~~~d~~~~~----~ 139 (563)
..|+|+- ++.+.+.+....|++||.+.+. .+...++.+...+ ....++...++.+++||..... .
T Consensus 162 sqVkwnyk~p~vlasshg~~i~vwd~r~gs-~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~ 240 (1081)
T KOG0309|consen 162 SQVKWNYKDPNVLASSHGNDIFVWDLRKGS-TPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKR 240 (1081)
T ss_pred ceeeecccCcchhhhccCCceEEEeccCCC-cceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccce
Confidence 7889986 4557777888999999999876 2333344333222 2445577888999999986431 1
Q ss_pred eeec----------ccCCCeEEEEecCCCeEEEEEe--cccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc----
Q 008510 140 LQIP----------GTNAGQTKVVREGDNGVAYSWD--MKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI---- 203 (563)
Q Consensus 140 l~~~----------g~~dg~~~l~~~~~~~~~~~wd--~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~---- 203 (563)
...+ ---+|.+.|...++. ++.+.+ .....|.+. .. ......|.||. |.|...-+
T Consensus 241 ~vtt~~piw~~r~~Pfg~g~~~mp~~G~n-~v~~~~c~n~d~e~n~~----~~---~~pVh~F~GH~-D~V~eFlWR~r~ 311 (1081)
T KOG0309|consen 241 TVTTNFPIWRGRYLPFGEGYCIMPMVGGN-MVPQLRCENSDLEWNVF----DL---NTPVHTFVGHD-DVVLEFLWRKRK 311 (1081)
T ss_pred eccccCcceeccccccCceeEeccccCCe-eeeeccccchhhhhccc----cC---CcceeeecCcc-hHHHHHhhhhcc
Confidence 1110 112555555555443 333332 222334322 10 11344577776 55543222
Q ss_pred ------CCCC-eeeeecCCCCCChhHHHHHH
Q 008510 204 ------GDGE-PTRKLPYNRSDNPYDAADKW 227 (563)
Q Consensus 204 ------~dg~-~~~~~~~n~~~~~w~~a~~f 227 (563)
.+.. .+.+-+-|.+.+.|-+....
T Consensus 312 e~~~d~d~rdfQLVTWSkD~~lrlWpI~~~i 342 (1081)
T KOG0309|consen 312 ECDGDYDSRDFQLVTWSKDQTLRLWPIDSQI 342 (1081)
T ss_pred cccCCCCccceeEEEeecCCceEeeeccHHH
Confidence 1111 26788889999999887554
No 241
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=97.93 E-value=7.1e-05 Score=71.48 Aligned_cols=98 Identities=14% Similarity=0.123 Sum_probs=77.7
Q ss_pred CCEEEEEECCCcEEEEcC-CCce--eEEEecCCCcEEEEEEcCCC--eEEEEeCCCcEEEEc---CCceeEE-Ee-cCCc
Q 008510 3 GVGIISASHDCTIRLWAL-TGQV--LMEMVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK---DGVCVQS-IE-HPGC 72 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~-~g~~--i~~l~gH~~~V~~v~~~p~g--~l~s~s~D~tvriWd---~~~~~~~-l~-h~~~ 72 (563)
|..++++-.+|.+.+-+. .... ++++++|.-..+-..|+... .+.+||+|+.++.|| .++++.. .+ |...
T Consensus 133 ~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~G 212 (339)
T KOG0280|consen 133 GTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSG 212 (339)
T ss_pred CceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecc
Confidence 455777778888885444 4433 44889999999999998654 789999999999999 4466554 33 8889
Q ss_pred EEEEEEccC-Cc-EEEEeCCCcEEEEEcCC
Q 008510 73 VWDAKFLEN-GD-IVTACSDGVTRIWTVHS 100 (563)
Q Consensus 73 V~~v~~~p~-g~-i~sgs~Dg~Irvwd~~~ 100 (563)
|.++.-+|. +. |++|+.|-.|++||.|.
T Consensus 213 V~SI~ss~~~~~~I~TGsYDe~i~~~DtRn 242 (339)
T KOG0280|consen 213 VVSIYSSPPKPTYIATGSYDECIRVLDTRN 242 (339)
T ss_pred eEEEecCCCCCceEEEeccccceeeeehhc
Confidence 999999875 44 99999999999999994
No 242
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=97.91 E-value=0.00021 Score=69.05 Aligned_cols=86 Identities=14% Similarity=0.119 Sum_probs=68.8
Q ss_pred EEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc-C----CceeEEEe-cCCcEEEEEEccCCc-EEEEeCCCcEEEEEc
Q 008510 27 EMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-D----GVCVQSIE-HPGCVWDAKFLENGD-IVTACSDGVTRIWTV 98 (563)
Q Consensus 27 ~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd-~----~~~~~~l~-h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~ 98 (563)
.+.--..+|+|.+|++|+ .++.+-....|.|+. . .+..+++. |...|..|.|.|.++ |++|+.|..-+||..
T Consensus 5 ~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~ 84 (361)
T KOG1523|consen 5 VFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQ 84 (361)
T ss_pred EeeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCcccccc
Confidence 343345789999999999 899988888999998 2 35677887 888999999999886 999999999999999
Q ss_pred -CCCceeceeeeccc
Q 008510 99 -HSDKVADSLELEAY 112 (563)
Q Consensus 99 -~~~~~~~~~~~~~~ 112 (563)
..++..+...+..+
T Consensus 85 ~~~~~WkptlvLlRi 99 (361)
T KOG1523|consen 85 PSGGTWKPTLVLLRI 99 (361)
T ss_pred CCCCeeccceeEEEe
Confidence 55555554444433
No 243
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=97.79 E-value=4.5e-05 Score=88.01 Aligned_cols=132 Identities=14% Similarity=0.241 Sum_probs=99.1
Q ss_pred CCEEEEEECCCcEEEEcCCCceeEEEecCCCcEEEEEEcCCCeEEE---EeCCCcEEEEc-----CCceeEEEecCCcEE
Q 008510 3 GVGIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASGLIVS---GSEDRFAKIWK-----DGVCVQSIEHPGCVW 74 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~~g~~i~~l~gH~~~V~~v~~~p~g~l~s---~s~D~tvriWd-----~~~~~~~l~h~~~V~ 74 (563)
|+.+..+..||.+.+|....++....+.|.-...+++|...+ +++ .++++.+.+|| ...++. -.|.+.++
T Consensus 2263 Gnk~~i~d~dg~l~l~q~~pk~~~s~qchnk~~~Df~Fi~s~-~~tag~s~d~~n~~lwDtl~~~~~s~v~-~~H~~gaT 2340 (2439)
T KOG1064|consen 2263 GNKFGIVDGDGDLSLWQASPKPYTSWQCHNKALSDFRFIGSL-LATAGRSSDNRNVCLWDTLLPPMNSLVH-TCHDGGAT 2340 (2439)
T ss_pred CCceeeeccCCceeecccCCcceeccccCCccccceeeeehh-hhccccCCCCCcccchhcccCcccceee-eecCCCce
Confidence 667778888999999999888888888899888888887643 444 35678999999 223444 22999999
Q ss_pred EEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccccceeEEeeccCCceEEEeCCCCcee
Q 008510 75 DAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLCRKKVGGLKLEDLPGLEAL 140 (563)
Q Consensus 75 ~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~d~~~~~~l 140 (563)
++++-|+.. +++||.+|.|++||++..+..+... ... .......+...|.+++|++.+...+
T Consensus 2341 ~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~--~~~--~~~~f~~~ss~g~ikIw~~s~~~ll 2403 (2439)
T KOG1064|consen 2341 VLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQ--ALD--TREYFVTGSSEGNIKIWRLSEFGLL 2403 (2439)
T ss_pred EEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhh--hhh--hhheeeccCcccceEEEEccccchh
Confidence 999999988 8999999999999999877433221 111 3344556667788888888766444
No 244
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.79 E-value=0.00027 Score=68.93 Aligned_cols=99 Identities=14% Similarity=0.220 Sum_probs=71.3
Q ss_pred CCCEEEEEECCCcEEEEcC--CCc----eeEEEecCCC------------cEEEEEEcCCC---eEEEEeCCCcEEEEc-
Q 008510 2 PGVGIISASHDCTIRLWAL--TGQ----VLMEMVGHTA------------IVYSIDSHASG---LIVSGSEDRFAKIWK- 59 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~--~g~----~i~~l~gH~~------------~V~~v~~~p~g---~l~s~s~D~tvriWd- 59 (563)
.|++|++|..+|.|-++.- ..+ ...+++.|.. .|..+.|.+++ .+...+.|+++++|.
T Consensus 36 ~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNdktiKlWKi 115 (433)
T KOG1354|consen 36 YGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKI 115 (433)
T ss_pred ccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCCcceeeeee
Confidence 5899999999999999975 222 3345555643 36678898875 677888999999997
Q ss_pred C--C--c--------------------------------eeEEEe--cCCcEEEEEEccCCcEEEEeCCCcEEEEEcCC
Q 008510 60 D--G--V--------------------------------CVQSIE--HPGCVWDAKFLENGDIVTACSDGVTRIWTVHS 100 (563)
Q Consensus 60 ~--~--~--------------------------------~~~~l~--h~~~V~~v~~~p~g~i~sgs~Dg~Irvwd~~~ 100 (563)
. + . |.+.+. |+-.|.+++++.|+.....+.|=.|.+|.+.-
T Consensus 116 ~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSADdLRINLWnlei 194 (433)
T KOG1354|consen 116 RERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSADDLRINLWNLEI 194 (433)
T ss_pred eccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeeccceeeeeccccc
Confidence 1 1 0 112222 66678999999988855556788899998863
No 245
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.74 E-value=0.00059 Score=73.55 Aligned_cols=159 Identities=13% Similarity=0.093 Sum_probs=109.3
Q ss_pred CCCEEEEEECCCcEEEEcCCCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEecCCcEEEEEE
Q 008510 2 PGVGIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIEHPGCVWDAKF 78 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~h~~~V~~v~~ 78 (563)
.+++|+-|..+|.|++.+..|.+ .+...|+.. ..+| +++|||.||+|.|-. +.+...++.....+.+|++
T Consensus 48 ~~~~~~~GtH~g~v~~~~~~~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~rpiksial 120 (846)
T KOG2066|consen 48 HDKFFALGTHRGAVYLTTCQGNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYDFKRPIKSIAL 120 (846)
T ss_pred hcceeeeccccceEEEEecCCcc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeEecCCcceeEEe
Confidence 46789999999999999998887 666667665 5568 999999999999998 7777777777778999999
Q ss_pred ccC------CcEEEEeCCCcEEEEEcCCCceeceeeeccccccccee-----EEeeccCCceEEEeCCCCceeeecccCC
Q 008510 79 LEN------GDIVTACSDGVTRIWTVHSDKVADSLELEAYASELSQY-----KLCRKKVGGLKLEDLPGLEALQIPGTNA 147 (563)
Q Consensus 79 ~p~------g~i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~~~-----~~~~~~~~~i~~~d~~~~~~l~~~g~~d 147 (563)
+|+ +++++||.-| +.++..+=-.......+..-++.+.+. .++-..+-.++++|.+....+...-.+.
T Consensus 121 ~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~g~lIAWand~Gv~vyd~~~~~~l~~i~~p~ 199 (846)
T KOG2066|consen 121 HPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWRGNLIAWANDDGVKVYDTPTRQRLTNIPPPS 199 (846)
T ss_pred ccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEecCcEEEEecCCCcEEEeccccceeeccCCCC
Confidence 997 2389999988 666654311101111233333333322 3344567789999999887765542222
Q ss_pred Ce-------EEEEecCCCeEEEEEeccc
Q 008510 148 GQ-------TKVVREGDNGVAYSWDMKE 168 (563)
Q Consensus 148 g~-------~~l~~~~~~~~~~~wd~~~ 168 (563)
+. ..+.+..+...+..|..+.
T Consensus 200 ~~~R~e~fpphl~W~~~~~LVIGW~d~v 227 (846)
T KOG2066|consen 200 QSVRPELFPPHLHWQDEDRLVIGWGDSV 227 (846)
T ss_pred CCCCcccCCCceEecCCCeEEEecCCeE
Confidence 21 2456666667777887543
No 246
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.72 E-value=0.0076 Score=58.12 Aligned_cols=196 Identities=18% Similarity=0.163 Sum_probs=112.8
Q ss_pred CCCcEEEEcC-CCceeEEEec---CCCcEEEEEEcCCCeEEEEeCCCcEEEEc--CCceeEEEecCCcEEEEEEccCCcE
Q 008510 11 HDCTIRLWAL-TGQVLMEMVG---HTAIVYSIDSHASGLIVSGSEDRFAKIWK--DGVCVQSIEHPGCVWDAKFLENGDI 84 (563)
Q Consensus 11 ~DgtIrlWd~-~g~~i~~l~g---H~~~V~~v~~~p~g~l~s~s~D~tvriWd--~~~~~~~l~h~~~V~~v~~~p~g~i 84 (563)
.+|+|..||. +|+.+....- ..+.+ +..+..++.+++++.++.+..|| +|+.+.....+..+...-...++.+
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~v 79 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGPGIGGPV-ATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGRV 79 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSSSCSSEE-ETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEETTEE
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCCCcc-ceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeeccccc
Confidence 3789999999 9999888753 22222 22333455777778999999999 8888887774443322223345568
Q ss_pred EEEeCCCcEEEEEcCCCceecee-eec----ccccc----c-ceeEEeeccCCceEEEeCCCCceeeec-c-c-------
Q 008510 85 VTACSDGVTRIWTVHSDKVADSL-ELE----AYASE----L-SQYKLCRKKVGGLKLEDLPGLEALQIP-G-T------- 145 (563)
Q Consensus 85 ~sgs~Dg~Irvwd~~~~~~~~~~-~~~----~~~~~----v-~~~~~~~~~~~~i~~~d~~~~~~l~~~-g-~------- 145 (563)
+.++.|+.++.+|..+++..-.. ... ..... + ....+.....+.+...|..++..+-.. . .
T Consensus 80 ~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~ 159 (238)
T PF13360_consen 80 YVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPI 159 (238)
T ss_dssp EEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--E
T ss_pred ccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcce
Confidence 88889999999999999854331 111 01001 1 123344444677777777655443211 1 1
Q ss_pred ------------CCCeEEEEecCCCeEEEEEecccce--EEEe-CcEeeCCCCCCCceeecCcccCcEEEEEcCCCCeee
Q 008510 146 ------------NAGQTKVVREGDNGVAYSWDMKEQK--WDKL-GEVVDGPDDGMNRPILDGIQYDYVFDVDIGDGEPTR 210 (563)
Q Consensus 146 ------------~dg~~~l~~~~~~~~~~~wd~~~~~--w~~~-g~v~~~~~~~~~~~~~~g~~~d~v~~vd~~dg~~~~ 210 (563)
.++ ...+...++.+..+ |..++. |... +...... ...+..+|.+...+.++.+|...|+.+.
T Consensus 160 ~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~~~~~~~~~-~~~~~~l~~~~~~~~l~~~d~~tG~~~W 236 (238)
T PF13360_consen 160 SSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGEKLWSKPISGIYSLP-SVDGGTLYVTSSDGRLYALDLKTGKVVW 236 (238)
T ss_dssp EEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTEEEEEECSS-ECECE-ECCCTEEEEEETTTEEEEEETTTTEEEE
T ss_pred eeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCCEEEEecCCCccCCc-eeeCCEEEEEeCCCEEEEEECCCCCEEe
Confidence 123 23333334333333 777775 7544 2222111 1124455555556888899988887543
No 247
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.70 E-value=0.00021 Score=74.31 Aligned_cols=95 Identities=18% Similarity=0.230 Sum_probs=81.5
Q ss_pred CEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEEEEE
Q 008510 4 VGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDAKF 78 (563)
Q Consensus 4 ~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~v~~ 78 (563)
..|.||+.|+.+-.|+. +++.++.+.+....+.+++++||| .++++| +++++|| +++.+++|+ |.+.|++++|
T Consensus 115 ~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f 192 (541)
T KOG4547|consen 115 GCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSF 192 (541)
T ss_pred CceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEE
Confidence 46899999999999999 899999999999999999999999 888876 6899999 889999999 9999999999
Q ss_pred ccC-----Cc--EEEEeCCCcEEEEEcCC
Q 008510 79 LEN-----GD--IVTACSDGVTRIWTVHS 100 (563)
Q Consensus 79 ~p~-----g~--i~sgs~Dg~Irvwd~~~ 100 (563)
.-+ |. +.+...+..+.+|-++.
T Consensus 193 ~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 193 TTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred EEeccccccceeeeccccccceeEEEEEc
Confidence 876 55 34445566778887665
No 248
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.70 E-value=0.0013 Score=54.59 Aligned_cols=66 Identities=20% Similarity=0.247 Sum_probs=56.4
Q ss_pred EEEEEEcC---CC--eEEEEeCCCcEEEEcCCceeEEEecCCcEEEEEEccCCcEEEEeCCCcEEEEEcCC
Q 008510 35 VYSIDSHA---SG--LIVSGSEDRFAKIWKDGVCVQSIEHPGCVWDAKFLENGDIVTACSDGVTRIWTVHS 100 (563)
Q Consensus 35 V~~v~~~p---~g--~l~s~s~D~tvriWd~~~~~~~l~h~~~V~~v~~~p~g~i~sgs~Dg~Irvwd~~~ 100 (563)
|.++++.. +| .|+.||+|..||+|+..+.+..++.++.|.+++-...++++.+-.+|+|.+|+...
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e~~~Ei~e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~ 72 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDEIVAEITETDKVTSLCSLGGGRFAYALANGTVGVYDRSQ 72 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCcEEEEEecccceEEEEEcCCCEEEEEecCCEEEEEeCcc
Confidence 55666543 55 79999999999999977899999988899999999888899999999999998644
No 249
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=97.69 E-value=0.00046 Score=66.98 Aligned_cols=83 Identities=18% Similarity=0.263 Sum_probs=65.0
Q ss_pred EEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC--eEEEEeCCCcEEEEc-CCceeEEEecCC-cEEEEEEc
Q 008510 5 GIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK-DGVCVQSIEHPG-CVWDAKFL 79 (563)
Q Consensus 5 ~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g--~l~s~s~D~tvriWd-~~~~~~~l~h~~-~V~~v~~~ 79 (563)
.+.....|+.|.+|++ .-+--..+..-...+.+++|+||| .+.++.-|-.+.||. ..+...-+.|+. .+..++|+
T Consensus 63 ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~ 142 (447)
T KOG4497|consen 63 ILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFH 142 (447)
T ss_pred eeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEEC
Confidence 3555677999999999 566566677777889999999999 677888899999999 444444566655 78999999
Q ss_pred cCCcEEEE
Q 008510 80 ENGDIVTA 87 (563)
Q Consensus 80 p~g~i~sg 87 (563)
|+|++++-
T Consensus 143 ~dg~f~ai 150 (447)
T KOG4497|consen 143 PDGQFCAI 150 (447)
T ss_pred CCCceeee
Confidence 99995443
No 250
>PRK00178 tolB translocation protein TolB; Provisional
Probab=97.69 E-value=0.0089 Score=63.52 Aligned_cols=90 Identities=14% Similarity=0.115 Sum_probs=63.7
Q ss_pred cEEEEcCCCceeEEEecCCCcEEEEEEcCCC-eEEEEeCC---CcEEEEc-CCceeEEEe-cCCcEEEEEEccCCc-EE-
Q 008510 14 TIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVSGSED---RFAKIWK-DGVCVQSIE-HPGCVWDAKFLENGD-IV- 85 (563)
Q Consensus 14 tIrlWd~~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D---~tvriWd-~~~~~~~l~-h~~~V~~v~~~p~g~-i~- 85 (563)
.|.++|.+|...+.+..|...+.+.+|+|+| .++..+.+ ..|.+|+ .+...+.+. .++.+...+|+|||+ ++
T Consensus 180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~ 259 (430)
T PRK00178 180 TLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAF 259 (430)
T ss_pred EEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEE
Confidence 4777788777667777788889999999999 66655533 3578888 333334444 445666789999998 65
Q ss_pred EEeCCC--cEEEEEcCCCce
Q 008510 86 TACSDG--VTRIWTVHSDKV 103 (563)
Q Consensus 86 sgs~Dg--~Irvwd~~~~~~ 103 (563)
+...+| .|++||+.+++.
T Consensus 260 ~~~~~g~~~Iy~~d~~~~~~ 279 (430)
T PRK00178 260 VLSKDGNPEIYVMDLASRQL 279 (430)
T ss_pred EEccCCCceEEEEECCCCCe
Confidence 444455 588889988763
No 251
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=97.68 E-value=0.00018 Score=67.63 Aligned_cols=67 Identities=21% Similarity=0.522 Sum_probs=55.1
Q ss_pred cEEEEEEcCCC--eEEEEeCCCcEEEEc--CCcee-EEEe-cCCcEEEEEEccC-Cc-EEEEeCCCcEEEEEcCC
Q 008510 34 IVYSIDSHASG--LIVSGSEDRFAKIWK--DGVCV-QSIE-HPGCVWDAKFLEN-GD-IVTACSDGVTRIWTVHS 100 (563)
Q Consensus 34 ~V~~v~~~p~g--~l~s~s~D~tvriWd--~~~~~-~~l~-h~~~V~~v~~~p~-g~-i~sgs~Dg~Irvwd~~~ 100 (563)
.|.+++-+|.. .+++|++||.+.+|| ..... ..+. |...+|.|.|+|. ++ +.+++.||.+-.||..+
T Consensus 181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred cchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 48999999965 788899999999999 33322 2333 9999999999994 55 99999999999999886
No 252
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.67 E-value=7.9e-05 Score=76.44 Aligned_cols=77 Identities=23% Similarity=0.483 Sum_probs=61.7
Q ss_pred eEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc---------CCceeEEEe-cCCcEEEEEEccCCc-EEEEeCCCc
Q 008510 25 LMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK---------DGVCVQSIE-HPGCVWDAKFLENGD-IVTACSDGV 92 (563)
Q Consensus 25 i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd---------~~~~~~~l~-h~~~V~~v~~~p~g~-i~sgs~Dg~ 92 (563)
+..+.||+..|..++-..+. -+++++.|+||++|. +..|..+++ |+.+|.++.|..+-+ +++ -||.
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD~g 805 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS--CDGG 805 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee--ccCc
Confidence 34678999998887755444 799999999999998 223666777 999999999998876 664 4899
Q ss_pred EEEEEcCCCce
Q 008510 93 TRIWTVHSDKV 103 (563)
Q Consensus 93 Irvwd~~~~~~ 103 (563)
|.+||.--++.
T Consensus 806 iHlWDPFigr~ 816 (1034)
T KOG4190|consen 806 IHLWDPFIGRL 816 (1034)
T ss_pred ceeecccccch
Confidence 99999877763
No 253
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=97.66 E-value=0.00034 Score=75.89 Aligned_cols=97 Identities=15% Similarity=0.214 Sum_probs=81.9
Q ss_pred CCCEEEEEECCCcEEEEcCCC-----ceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCc
Q 008510 2 PGVGIISASHDCTIRLWALTG-----QVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGC 72 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~~g-----~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~ 72 (563)
.++++++|..||.|.+|.--| .....++=|...|.+++|+++| .+.|||..+-+-+|. +++ .+-+. ..+.
T Consensus 216 n~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~ 294 (792)
T KOG1963|consen 216 NERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSP 294 (792)
T ss_pred ccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCe
Confidence 478999999999999998622 2345677799999999999999 999999999999999 555 45555 6779
Q ss_pred EEEEEEccCCc-EEEEeCCCcEEEEEcC
Q 008510 73 VWDAKFLENGD-IVTACSDGVTRIWTVH 99 (563)
Q Consensus 73 V~~v~~~p~g~-i~sgs~Dg~Irvwd~~ 99 (563)
|..+.++||++ .+..+.|+.|.+-...
T Consensus 295 I~~i~vS~ds~~~sl~~~DNqI~li~~~ 322 (792)
T KOG1963|consen 295 ILHIVVSPDSDLYSLVLEDNQIHLIKAS 322 (792)
T ss_pred eEEEEEcCCCCeEEEEecCceEEEEecc
Confidence 99999999999 6788889999888764
No 254
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=97.65 E-value=0.00022 Score=82.67 Aligned_cols=163 Identities=17% Similarity=0.255 Sum_probs=108.9
Q ss_pred CEEEEEECCCcEEEEcCCCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe--cCCcEEEEEE
Q 008510 4 VGIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE--HPGCVWDAKF 78 (563)
Q Consensus 4 ~~l~s~s~DgtIrlWd~~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~--h~~~V~~v~~ 78 (563)
+.+....-+++..-|...|.-+ .++-|-..|.++.-+|.. ..+||+.||.|++|. .+..+..++ .+..|..+.|
T Consensus 2181 ~~~~~~n~~~~~~tq~~~~~~~-~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f 2259 (2439)
T KOG1064|consen 2181 NRFTPSNLPWLGSTQTSRGASV-MIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRF 2259 (2439)
T ss_pred ccCCcccCCccccceeccccee-EeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhh
Confidence 4455555567777777644332 234456778888888877 889999999999999 666666666 4578999999
Q ss_pred ccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccccceeEEe---------eccCCceEEEeC--CCCceeeecccC
Q 008510 79 LENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLC---------RKKVGGLKLEDL--PGLEALQIPGTN 146 (563)
Q Consensus 79 ~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~~~~~~---------~~~~~~i~~~d~--~~~~~l~~~g~~ 146 (563)
+.+|. +..+..||.+.+|.....- -...+.|......+.+. ...++.+.+||. ++...+.-..|.
T Consensus 2260 ~~qGnk~~i~d~dg~l~l~q~~pk~---~~s~qchnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~ 2336 (2439)
T KOG1064|consen 2260 NHQGNKFGIVDGDGDLSLWQASPKP---YTSWQCHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHD 2336 (2439)
T ss_pred cccCCceeeeccCCceeecccCCcc---eeccccCCccccceeeeehhhhccccCCCCCcccchhcccCcccceeeeecC
Confidence 99998 8888999999999988432 12233344333333332 124578999996 333333335666
Q ss_pred CCeEE---------EEecCCCeEEEEEecccce
Q 008510 147 AGQTK---------VVREGDNGVAYSWDMKEQK 170 (563)
Q Consensus 147 dg~~~---------l~~~~~~~~~~~wd~~~~~ 170 (563)
.|.+. ++.++.++.+++||...++
T Consensus 2337 ~gaT~l~~~P~~qllisggr~G~v~l~D~rqrq 2369 (2439)
T KOG1064|consen 2337 GGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQ 2369 (2439)
T ss_pred CCceEEEEcCcceEEEecCCcCcEEEeehHHHH
Confidence 66543 3444556778889976654
No 255
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.65 E-value=0.00031 Score=73.60 Aligned_cols=72 Identities=13% Similarity=0.062 Sum_probs=60.3
Q ss_pred cCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc-CCceeEEEecCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCC
Q 008510 30 GHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-DGVCVQSIEHPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSD 101 (563)
Q Consensus 30 gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd-~~~~~~~l~h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~ 101 (563)
.+.+.|.|++++|+. .++.|++||+|++|| ..+..+..++.-....++|+|+|. +++|+.-|.+.+||+.-.
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 467789999999998 999999999999999 544444445666889999999999 788888899999998644
No 256
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=97.60 E-value=0.00016 Score=69.20 Aligned_cols=100 Identities=20% Similarity=0.266 Sum_probs=76.5
Q ss_pred CCEEEEEECCCcEEEEcC--CCceeEE-EecCCCcEEEEEEcCC-C-eEEEEeCCCcEEEEc---CCceeEEEecCCcEE
Q 008510 3 GVGIISASHDCTIRLWAL--TGQVLME-MVGHTAIVYSIDSHAS-G-LIVSGSEDRFAKIWK---DGVCVQSIEHPGCVW 74 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~--~g~~i~~-l~gH~~~V~~v~~~p~-g-~l~s~s~D~tvriWd---~~~~~~~l~h~~~V~ 74 (563)
-+.+.+||.|+.+.-||. .++++.. -+-|+..|.|+.-+|. + .+++|+-|.++++|| -++++..-.-.+.||
T Consensus 178 pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVW 257 (339)
T KOG0280|consen 178 PNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVW 257 (339)
T ss_pred CceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceE
Confidence 367899999999999998 5666655 6679999999998875 4 899999999999999 345544334567999
Q ss_pred EEEEccCC--cEEEEeCCCcEEEEEcCCCc
Q 008510 75 DAKFLENG--DIVTACSDGVTRIWTVHSDK 102 (563)
Q Consensus 75 ~v~~~p~g--~i~sgs~Dg~Irvwd~~~~~ 102 (563)
.+.++|.- ++..+|.-+-.+|-+...+.
T Consensus 258 Ri~~~p~~~~~lL~~CMh~G~ki~~~~~~~ 287 (339)
T KOG0280|consen 258 RIKHHPEIFHRLLAACMHNGAKILDSSDKV 287 (339)
T ss_pred EEEecchhhhHHHHHHHhcCceEEEecccc
Confidence 99999953 35555555556676665543
No 257
>PRK04792 tolB translocation protein TolB; Provisional
Probab=97.60 E-value=0.0072 Score=64.53 Aligned_cols=89 Identities=13% Similarity=0.145 Sum_probs=60.8
Q ss_pred cEEEEcCCCceeEEEecCCCcEEEEEEcCCC-eEEEEe-CCC--cEEEEc-CCceeEEEe-cCCcEEEEEEccCCc-EE-
Q 008510 14 TIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVSGS-EDR--FAKIWK-DGVCVQSIE-HPGCVWDAKFLENGD-IV- 85 (563)
Q Consensus 14 tIrlWd~~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s-~D~--tvriWd-~~~~~~~l~-h~~~V~~v~~~p~g~-i~- 85 (563)
.|.++|.+|.-.+.+..+...+.+..|+||| .++..+ +++ .|.+|| .+.....+. .++.....+|+|||+ |+
T Consensus 199 ~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~ 278 (448)
T PRK04792 199 QLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLAL 278 (448)
T ss_pred EEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEE
Confidence 5667788776556777778889999999999 665543 344 477777 333333344 344556789999998 65
Q ss_pred EEeCCCc--EEEEEcCCCc
Q 008510 86 TACSDGV--TRIWTVHSDK 102 (563)
Q Consensus 86 sgs~Dg~--Irvwd~~~~~ 102 (563)
+.+.+|. |++||+.+++
T Consensus 279 ~~~~~g~~~Iy~~dl~tg~ 297 (448)
T PRK04792 279 VLSKDGQPEIYVVDIATKA 297 (448)
T ss_pred EEeCCCCeEEEEEECCCCC
Confidence 4566665 7777887765
No 258
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.58 E-value=0.0012 Score=68.91 Aligned_cols=117 Identities=13% Similarity=0.131 Sum_probs=93.5
Q ss_pred CCEEEEEECCCcEEEEcC-CCceeEEEe--cCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEE
Q 008510 3 GVGIISASHDCTIRLWAL-TGQVLMEMV--GHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWD 75 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~-~g~~i~~l~--gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~ 75 (563)
-..++-|-..|.|-+|++ .|+.-.++. +|.+.|.++.++.+- .|-|++.|+.+-.|+ ..+.+..+. .+..+.+
T Consensus 70 t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~s 149 (541)
T KOG4547|consen 70 TSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSS 149 (541)
T ss_pred ceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccce
Confidence 356788889999999999 888888776 699999999988775 899999999999999 666677676 6668999
Q ss_pred EEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccccceeEEee
Q 008510 76 AKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLCR 123 (563)
Q Consensus 76 v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~~~~~~~ 123 (563)
++.+|||. +++++ +.|++||+.+++... .+.+|...+..+.+..
T Consensus 150 l~is~D~~~l~~as--~~ik~~~~~~kevv~--~ftgh~s~v~t~~f~~ 194 (541)
T KOG4547|consen 150 LCISPDGKILLTAS--RQIKVLDIETKEVVI--TFTGHGSPVRTLSFTT 194 (541)
T ss_pred EEEcCCCCEEEecc--ceEEEEEccCceEEE--EecCCCcceEEEEEEE
Confidence 99999998 66665 699999999998543 3445555565555443
No 259
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=97.56 E-value=0.00023 Score=69.42 Aligned_cols=101 Identities=22% Similarity=0.325 Sum_probs=76.6
Q ss_pred CCEEEEEECCCcEEEEcC-C-----CceeEEEecCCCcEEEEEEcC-CC-eEEEEeCCCcEEEEc--CCce---eEEEe-
Q 008510 3 GVGIISASHDCTIRLWAL-T-----GQVLMEMVGHTAIVYSIDSHA-SG-LIVSGSEDRFAKIWK--DGVC---VQSIE- 68 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~-~-----g~~i~~l~gH~~~V~~v~~~p-~g-~l~s~s~D~tvriWd--~~~~---~~~l~- 68 (563)
+..+..|...|.|...|+ . |.+...+. |.+.|+|+.... ++ .+.+++.+|+|++|| -.+| ++++.
T Consensus 264 ~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeG 342 (425)
T KOG2695|consen 264 DNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEG 342 (425)
T ss_pred CCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeec
Confidence 678889999999999998 2 45666665 899999998776 45 889999999999999 3344 55555
Q ss_pred cCCcEEEEEEcc------CCcEEEEeCCCcEEEEEcCCCceecee
Q 008510 69 HPGCVWDAKFLE------NGDIVTACSDGVTRIWTVHSDKVADSL 107 (563)
Q Consensus 69 h~~~V~~v~~~p------~g~i~sgs~Dg~Irvwd~~~~~~~~~~ 107 (563)
| |...+..| +|-|++++.|-..|+|.++++......
T Consensus 343 H---vN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~ti 384 (425)
T KOG2695|consen 343 H---VNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTI 384 (425)
T ss_pred c---cccccccccccccccceEEEccCeeEEEEEecccCceeecc
Confidence 5 33333333 334889999999999999999855433
No 260
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.55 E-value=0.013 Score=68.96 Aligned_cols=221 Identities=14% Similarity=0.109 Sum_probs=124.6
Q ss_pred CCCEEEEEECCCcEEEEcCCCceeEEEec--C------------CCcEEEEEEcCCC-e-EEEEeCCCcEEEEc-CCcee
Q 008510 2 PGVGIISASHDCTIRLWALTGQVLMEMVG--H------------TAIVYSIDSHASG-L-IVSGSEDRFAKIWK-DGVCV 64 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~~g~~i~~l~g--H------------~~~V~~v~~~p~g-~-l~s~s~D~tvriWd-~~~~~ 64 (563)
+|+.+++-+..+.|++||.+|..+..+.+ . -..-..+++.+++ . +++-...+.|+++| ....+
T Consensus 579 ~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V 658 (1057)
T PLN02919 579 NNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNETV 658 (1057)
T ss_pred CCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEE
Confidence 35678888888999999998877665543 1 1134789999876 4 44445567899999 55666
Q ss_pred EEEecC------------------CcEEEEEEcc-CCc-EEEEeCCCcEEEEEcCCCceecee------ee-------cc
Q 008510 65 QSIEHP------------------GCVWDAKFLE-NGD-IVTACSDGVTRIWTVHSDKVADSL------EL-------EA 111 (563)
Q Consensus 65 ~~l~h~------------------~~V~~v~~~p-~g~-i~sgs~Dg~Irvwd~~~~~~~~~~------~~-------~~ 111 (563)
.++... ..-+.|+++| +|. .++.+.++.|++||..++...... .. ..
T Consensus 659 ~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~ 738 (1057)
T PLN02919 659 RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTS 738 (1057)
T ss_pred EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCcccccc
Confidence 665310 1347899999 566 577778899999999877532100 00 00
Q ss_pred cccc--------cceeEEeeccCCceEEEeCCCCceeeec--------------------------------ccCCCeEE
Q 008510 112 YASE--------LSQYKLCRKKVGGLKLEDLPGLEALQIP--------------------------------GTNAGQTK 151 (563)
Q Consensus 112 ~~~~--------v~~~~~~~~~~~~i~~~d~~~~~~l~~~--------------------------------g~~dg~~~ 151 (563)
+... -..+.++...++.|++||+.+....... ..++|.+.
T Consensus 739 ~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LY 818 (1057)
T PLN02919 739 FAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIY 818 (1057)
T ss_pred ccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEE
Confidence 0000 0113444555688999998754322111 12334433
Q ss_pred EEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeeeecCCCCCChhHHHHH
Q 008510 152 VVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRKLPYNRSDNPYDAADK 226 (563)
Q Consensus 152 l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~~~~~w~~a~~ 226 (563)
+.... +..+..||..++....+.. .+..+..++. ...+ ..+....+.+ ++|+....-..|..++.|+..++
T Consensus 819 VADs~-N~rIrviD~~tg~v~tiaG-~G~~G~~dG~-~~~a-~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~ 890 (1057)
T PLN02919 819 VADSY-NHKIKKLDPATKRVTTLAG-TGKAGFKDGK-ALKA-QLSEPAGLALGENGRLFVADTNNSLIRYLDLNKG 890 (1057)
T ss_pred EEECC-CCEEEEEECCCCeEEEEec-cCCcCCCCCc-cccc-ccCCceEEEEeCCCCEEEEECCCCEEEEEECCCC
Confidence 33322 2445566655544332210 0000000000 0111 1234566777 78887777788888999987543
No 261
>PRK01029 tolB translocation protein TolB; Provisional
Probab=97.53 E-value=0.0034 Score=66.51 Aligned_cols=101 Identities=15% Similarity=0.087 Sum_probs=63.5
Q ss_pred CCCEEEEEEC-----CCcEEEEcC-C---CceeEEEecCCCcEEEEEEcCCC-eEEEEe-CCCcEEEEc---C--CceeE
Q 008510 2 PGVGIISASH-----DCTIRLWAL-T---GQVLMEMVGHTAIVYSIDSHASG-LIVSGS-EDRFAKIWK---D--GVCVQ 65 (563)
Q Consensus 2 ~g~~l~s~s~-----DgtIrlWd~-~---g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s-~D~tvriWd---~--~~~~~ 65 (563)
||+.|+..+. |..+..|++ . ++..+...++.+.....+|+||| .++..+ .++...||. . +...+
T Consensus 241 DG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~ 320 (428)
T PRK01029 241 RKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPR 320 (428)
T ss_pred CCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceE
Confidence 5777776553 223444776 3 23333333433455678999999 555544 577767775 2 33345
Q ss_pred EEe-cCCcEEEEEEccCCc-EEEEeCC---CcEEEEEcCCCc
Q 008510 66 SIE-HPGCVWDAKFLENGD-IVTACSD---GVTRIWTVHSDK 102 (563)
Q Consensus 66 ~l~-h~~~V~~v~~~p~g~-i~sgs~D---g~Irvwd~~~~~ 102 (563)
.+. +...+.+..|+|||+ |+..+.+ ..|.+||+.+++
T Consensus 321 ~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~ 362 (428)
T PRK01029 321 LLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGR 362 (428)
T ss_pred EeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCC
Confidence 555 445778899999999 6655443 368899988776
No 262
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=97.52 E-value=0.00027 Score=69.02 Aligned_cols=135 Identities=13% Similarity=0.155 Sum_probs=88.4
Q ss_pred EEECCCcEEEEcCCCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc-------CCceeEEEecCCcEEEEEEc
Q 008510 8 SASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-------DGVCVQSIEHPGCVWDAKFL 79 (563)
Q Consensus 8 s~s~DgtIrlWd~~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd-------~~~~~~~l~h~~~V~~v~~~ 79 (563)
+.|.+-.|-+-++.+..-..|. ..+.|.++.|...+ .+..|+..|.|...| .+.+.+.+.|+..|+++...
T Consensus 229 s~G~sqqv~L~nvetg~~qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~L 307 (425)
T KOG2695|consen 229 SVGLSQQVLLTNVETGHQQSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQIL 307 (425)
T ss_pred cccccceeEEEEeecccccccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhh
Confidence 3444555666665332223333 45667888888766 889999999999999 36788889999999999998
Q ss_pred c-CCc-EEEEeCCCcEEEEEcCCCcee-ceeeeccccc----------ccceeEEeeccCCceEEEeCCCCceeeec
Q 008510 80 E-NGD-IVTACSDGVTRIWTVHSDKVA-DSLELEAYAS----------ELSQYKLCRKKVGGLKLEDLPGLEALQIP 143 (563)
Q Consensus 80 p-~g~-i~sgs~Dg~Irvwd~~~~~~~-~~~~~~~~~~----------~v~~~~~~~~~~~~i~~~d~~~~~~l~~~ 143 (563)
. ++. +.+.+.+|+|++||.|.-++- .....++|.+ .-...+++.+.|--.++|.+..+..+...
T Consensus 308 q~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~ti 384 (425)
T KOG2695|consen 308 QFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTI 384 (425)
T ss_pred ccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeecc
Confidence 8 555 888899999999999866531 1112222221 12244455555556666666655555433
No 263
>PRK04792 tolB translocation protein TolB; Provisional
Probab=97.51 E-value=0.0036 Score=66.84 Aligned_cols=100 Identities=14% Similarity=0.108 Sum_probs=62.2
Q ss_pred CCCEEEEEECC-C--cEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eE-EEEeCCCc--EEEEc-CCceeEEEe-cCC
Q 008510 2 PGVGIISASHD-C--TIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LI-VSGSEDRF--AKIWK-DGVCVQSIE-HPG 71 (563)
Q Consensus 2 ~g~~l~s~s~D-g--tIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l-~s~s~D~t--vriWd-~~~~~~~l~-h~~ 71 (563)
||+.++..+.+ + .|.+||+ +|+. ..+....+.....+|+||| .+ ++.+.++. |.+|| .+.....+. +..
T Consensus 228 DG~~La~~s~~~g~~~L~~~dl~tg~~-~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~ 306 (448)
T PRK04792 228 DGRKLAYVSFENRKAEIFVQDIYTQVR-EKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRITRHRA 306 (448)
T ss_pred CCCEEEEEEecCCCcEEEEEECCCCCe-EEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECccCCC
Confidence 57777766543 3 4788888 4543 2333223344578999999 54 45677776 55666 444445555 555
Q ss_pred cEEEEEEccCCc-EEEEeC-CC--cEEEEEcCCCc
Q 008510 72 CVWDAKFLENGD-IVTACS-DG--VTRIWTVHSDK 102 (563)
Q Consensus 72 ~V~~v~~~p~g~-i~sgs~-Dg--~Irvwd~~~~~ 102 (563)
.....+|+|||+ |+..+. ++ .|.++|+.+++
T Consensus 307 ~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~ 341 (448)
T PRK04792 307 IDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGK 341 (448)
T ss_pred CccceEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 678899999998 654443 34 45666666654
No 264
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.46 E-value=0.016 Score=60.37 Aligned_cols=207 Identities=18% Similarity=0.149 Sum_probs=116.2
Q ss_pred CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCCeEEEEeCCCcEEEEc--CCceeEEEecCCcEEEEEE
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWK--DGVCVQSIEHPGCVWDAKF 78 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g~l~s~s~D~tvriWd--~~~~~~~l~h~~~V~~v~~ 78 (563)
.|+.++.++.+|.|.-+|. +|+.+....-......+.... ++.++.++.|+.+..+| +|+.+......+.+.+.-.
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v~-~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~ 142 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGAD-GGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPL 142 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEEc-CCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCE
Confidence 3667888889999999998 899887766444322233332 34777888999999999 7888777664444433222
Q ss_pred ccCCcEEEEeCCCcEEEEEcCCCceeceeeecc-------ccc--ccceeEEeeccCCceEEEeCCCCceeeec--c---
Q 008510 79 LENGDIVTACSDGVTRIWTVHSDKVADSLELEA-------YAS--ELSQYKLCRKKVGGLKLEDLPGLEALQIP--G--- 144 (563)
Q Consensus 79 ~p~g~i~sgs~Dg~Irvwd~~~~~~~~~~~~~~-------~~~--~v~~~~~~~~~~~~i~~~d~~~~~~l~~~--g--- 144 (563)
..++.++.++.||.++.||.++++..-...... ... ......+.+..++.+..+|..+++.+-.. +
T Consensus 143 v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~ 222 (377)
T TIGR03300 143 VANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPK 222 (377)
T ss_pred EECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEEECCCCEEEEEEccCCCEeeeeccccCC
Confidence 224557778889999999999887432111110 000 01123344555567777776555432110 0
Q ss_pred -------------cC--CCeEEEEecCCCeEEEEEecccce--EEEeCcEeeCCCCCCCceeecCcccCcEEEEEcCCCC
Q 008510 145 -------------TN--AGQTKVVREGDNGVAYSWDMKEQK--WDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDIGDGE 207 (563)
Q Consensus 145 -------------~~--dg~~~l~~~~~~~~~~~wd~~~~~--w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~~dg~ 207 (563)
++ .+...++.+. ++.++.+|..++. |..-........ -....+|.+...+.++.++..+|+
T Consensus 223 g~~~~~~~~~~~~~p~~~~~~vy~~~~-~g~l~a~d~~tG~~~W~~~~~~~~~p~-~~~~~vyv~~~~G~l~~~d~~tG~ 300 (377)
T TIGR03300 223 GRTELERLVDVDGDPVVDGGQVYAVSY-QGRVAALDLRSGRVLWKRDASSYQGPA-VDDNRLYVTDADGVVVALDRRSGS 300 (377)
T ss_pred CCCchhhhhccCCccEEECCEEEEEEc-CCEEEEEECCCCcEEEeeccCCccCce-EeCCEEEEECCCCeEEEEECCCCc
Confidence 00 1112222222 3456667766553 543210000000 013455555555678888887776
Q ss_pred eeee
Q 008510 208 PTRK 211 (563)
Q Consensus 208 ~~~~ 211 (563)
.+.+
T Consensus 301 ~~W~ 304 (377)
T TIGR03300 301 ELWK 304 (377)
T ss_pred EEEc
Confidence 5543
No 265
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.45 E-value=0.00038 Score=44.81 Aligned_cols=38 Identities=34% Similarity=0.610 Sum_probs=30.1
Q ss_pred CceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc
Q 008510 22 GQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK 59 (563)
Q Consensus 22 g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd 59 (563)
++++..+.+|...|.+++|++++ .+++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45667777888888888888876 788888888888885
No 266
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=97.44 E-value=0.00018 Score=71.54 Aligned_cols=67 Identities=27% Similarity=0.401 Sum_probs=55.5
Q ss_pred CCCEEEEEECCCcEEEEcCC-Ccee-EEEecCCCcEEEEEEcCCCeEEEEeCCCcEEEEc--CCceeEEEe
Q 008510 2 PGVGIISASHDCTIRLWALT-GQVL-MEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWK--DGVCVQSIE 68 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~~-g~~i-~~l~gH~~~V~~v~~~p~g~l~s~s~D~tvriWd--~~~~~~~l~ 68 (563)
|+++++++..|+.||+=... .-.+ .-.-||+.+|..+++-++..++|||.|+++|+|| +|++++++.
T Consensus 162 D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 162 DDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYLLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred CCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCceeeecCCCCcEEEEecccCCcccccc
Confidence 57899999999999997762 2222 3346899999999998776789999999999999 899887765
No 267
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=97.43 E-value=0.00038 Score=65.56 Aligned_cols=63 Identities=16% Similarity=0.255 Sum_probs=53.5
Q ss_pred CCEEEEEECCCcEEEEcC-CC-ceeEEEecCCCcEEEEEEcCCC--eEEEEeCCCcEEEEc-CCceeE
Q 008510 3 GVGIISASHDCTIRLWAL-TG-QVLMEMVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK-DGVCVQ 65 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~-~g-~~i~~l~gH~~~V~~v~~~p~g--~l~s~s~D~tvriWd-~~~~~~ 65 (563)
...+++|+.||.+-+||. .. -++..+..|...++-|-|+|.. .+++|++||.+.-|| ++..+.
T Consensus 192 q~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~~~l~ 259 (319)
T KOG4714|consen 192 QHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDASTTFLS 259 (319)
T ss_pred ccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCCceEE
Confidence 457889999999999999 43 4566788999999999999975 899999999999999 655443
No 268
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.42 E-value=0.0059 Score=50.68 Aligned_cols=89 Identities=18% Similarity=0.260 Sum_probs=67.7
Q ss_pred CEEEEEECCCcEEEEcCCCceeEEEecCCCcEEEEEEcCCCeEEEEeCCCcEEEEcCCceeEEEecCCcEEEEEEcc---
Q 008510 4 VGIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWKDGVCVQSIEHPGCVWDAKFLE--- 80 (563)
Q Consensus 4 ~~l~s~s~DgtIrlWd~~g~~i~~l~gH~~~V~~v~~~p~g~l~s~s~D~tvriWd~~~~~~~l~h~~~V~~v~~~p--- 80 (563)
+.|+.||.|..||+|+- .+++.++.. ++.|.+++-...+.|+.+-+.|||.+++....+..++....+.++.+..
T Consensus 16 ~eLlvGs~D~~IRvf~~-~e~~~Ei~e-~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~RlWRiKSK~~~~~~~~~D~~g 93 (111)
T PF14783_consen 16 NELLVGSDDFEIRVFKG-DEIVAEITE-TDKVTSLCSLGGGRFAYALANGTVGVYDRSQRLWRIKSKNQVTSMAFYDING 93 (111)
T ss_pred ceEEEecCCcEEEEEeC-CcEEEEEec-ccceEEEEEcCCCEEEEEecCCEEEEEeCcceeeeeccCCCeEEEEEEcCCC
Confidence 57999999999999994 467777764 4667788777667999999999999999555556666444566666654
Q ss_pred CCc--EEEEeCCCcEE
Q 008510 81 NGD--IVTACSDGVTR 94 (563)
Q Consensus 81 ~g~--i~sgs~Dg~Ir 94 (563)
+|. +++|-++|.|-
T Consensus 94 dG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 94 DGVPELIVGWSNGKVE 109 (111)
T ss_pred CCceEEEEEecCCeEE
Confidence 343 89999999874
No 269
>PRK00178 tolB translocation protein TolB; Provisional
Probab=97.42 E-value=0.0053 Score=65.27 Aligned_cols=100 Identities=15% Similarity=0.139 Sum_probs=65.1
Q ss_pred CCCEEEEEECC---CcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEE-EEeCCC--cEEEEc-CCceeEEEe-cCC
Q 008510 2 PGVGIISASHD---CTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIV-SGSEDR--FAKIWK-DGVCVQSIE-HPG 71 (563)
Q Consensus 2 ~g~~l~s~s~D---gtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~-s~s~D~--tvriWd-~~~~~~~l~-h~~ 71 (563)
||+.|+..+.+ ..|.+|++ +|+. ..+....+.+...+|+|+| .++ +.+.++ .|.+|| .+...+.+. +..
T Consensus 209 DG~~la~~s~~~~~~~l~~~~l~~g~~-~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~ 287 (430)
T PRK00178 209 DGKRIAYVSFEQKRPRIFVQNLDTGRR-EQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSRVTNHPA 287 (430)
T ss_pred CCCEEEEEEcCCCCCEEEEEECCCCCE-EEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEEcccCCC
Confidence 57788776654 35888898 5543 3344444556678999999 554 566666 467778 444444555 555
Q ss_pred cEEEEEEccCCc-EEEEeC-CC--cEEEEEcCCCc
Q 008510 72 CVWDAKFLENGD-IVTACS-DG--VTRIWTVHSDK 102 (563)
Q Consensus 72 ~V~~v~~~p~g~-i~sgs~-Dg--~Irvwd~~~~~ 102 (563)
......|+|+|+ |+..+. +| .|+++|+.+++
T Consensus 288 ~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~ 322 (430)
T PRK00178 288 IDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGR 322 (430)
T ss_pred CcCCeEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 677789999998 655443 33 46777776665
No 270
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.39 E-value=0.0047 Score=66.84 Aligned_cols=99 Identities=17% Similarity=0.208 Sum_probs=74.2
Q ss_pred CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCC-----C-eEEEEeCCCcEEEEc---CCceeEE-Ee-c
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHAS-----G-LIVSGSEDRFAKIWK---DGVCVQS-IE-H 69 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~-----g-~l~s~s~D~tvriWd---~~~~~~~-l~-h 69 (563)
+|.+++|||.||+|.|-.+ +++...++. ...++.+|+++|+ . ++++||.-| +.+.. =+..... +. .
T Consensus 82 ~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~ 159 (846)
T KOG2066|consen 82 EGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEG 159 (846)
T ss_pred CCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecC
Confidence 6899999999999999998 666655543 5578999999997 2 799999988 77766 2222222 33 5
Q ss_pred CCcEEEEEEccCCcEEEEeCCCcEEEEEcCCCcee
Q 008510 70 PGCVWDAKFLENGDIVTACSDGVTRIWTVHSDKVA 104 (563)
Q Consensus 70 ~~~V~~v~~~p~g~i~sgs~Dg~Irvwd~~~~~~~ 104 (563)
.+.|.++.|. |+++.=..|--|+|||+.+++..
T Consensus 160 eG~I~~i~W~--g~lIAWand~Gv~vyd~~~~~~l 192 (846)
T KOG2066|consen 160 EGPIHSIKWR--GNLIAWANDDGVKVYDTPTRQRL 192 (846)
T ss_pred ccceEEEEec--CcEEEEecCCCcEEEecccccee
Confidence 5699999994 66555555666899999988744
No 271
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=97.39 E-value=0.00029 Score=71.64 Aligned_cols=112 Identities=24% Similarity=0.342 Sum_probs=81.4
Q ss_pred eeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe--cCCcEEEEEEccCC-c--EEEEeCCCcEEE
Q 008510 24 VLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE--HPGCVWDAKFLENG-D--IVTACSDGVTRI 95 (563)
Q Consensus 24 ~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~--h~~~V~~v~~~p~g-~--i~sgs~Dg~Irv 95 (563)
....|.+|.++|..|.|+..| .++|||.|..|.+|| .++....+. |...|..-.|.|.. + |++++.||.||+
T Consensus 134 l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~ 213 (559)
T KOG1334|consen 134 LQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRV 213 (559)
T ss_pred hhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceee
Confidence 345688999999999999999 999999999999999 666666665 77788888899953 3 999999999999
Q ss_pred EEcCC-CceeceeeecccccccceeEE---------eeccCCceEEEeCC
Q 008510 96 WTVHS-DKVADSLELEAYASELSQYKL---------CRKKVGGLKLEDLP 135 (563)
Q Consensus 96 wd~~~-~~~~~~~~~~~~~~~v~~~~~---------~~~~~~~i~~~d~~ 135 (563)
=.+.. +.+.....+..|.+.+...++ +.+.++.+.-.|++
T Consensus 214 s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr 263 (559)
T KOG1334|consen 214 SEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLR 263 (559)
T ss_pred eeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeec
Confidence 77643 333334445555555543332 34445555555554
No 272
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.36 E-value=0.054 Score=56.41 Aligned_cols=210 Identities=13% Similarity=0.108 Sum_probs=119.3
Q ss_pred CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCCeEEEEeCCCcEEEEc--CCceeEEEecCCcEEEEE-
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWK--DGVCVQSIEHPGCVWDAK- 77 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g~l~s~s~D~tvriWd--~~~~~~~l~h~~~V~~v~- 77 (563)
+++.++.++.|+.+..+|. +|+.+...... +.+.+.-...++.++.++.|+.+..|| +|+.+..+........+.
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~ 182 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLS-SEVLSPPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRG 182 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeeccC-ceeecCCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecC
Confidence 4677888889999999999 89988776533 223321111244666777899999999 788877766332211111
Q ss_pred ----EccCCcEEEEeCCCcEEEEEcCCCceeceeeecc------------cccc---cceeEEeeccCCceEEEeCCCCc
Q 008510 78 ----FLENGDIVTACSDGVTRIWTVHSDKVADSLELEA------------YASE---LSQYKLCRKKVGGLKLEDLPGLE 138 (563)
Q Consensus 78 ----~~p~g~i~sgs~Dg~Irvwd~~~~~~~~~~~~~~------------~~~~---v~~~~~~~~~~~~i~~~d~~~~~ 138 (563)
...++.++.+..++.+..+|.++++..-...... +... .....+....++.+..+|..+++
T Consensus 183 ~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~ 262 (377)
T TIGR03300 183 SASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGR 262 (377)
T ss_pred CCCCEEECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCc
Confidence 1114457888889999999999887432211110 0000 12334445566788888876554
Q ss_pred eeeec--c-----cCCCeEEEEecCCCeEEEEEecccc--eEEEe---CcEeeCCCCCCCceeecCcccCcEEEEEcCCC
Q 008510 139 ALQIP--G-----TNAGQTKVVREGDNGVAYSWDMKEQ--KWDKL---GEVVDGPDDGMNRPILDGIQYDYVFDVDIGDG 206 (563)
Q Consensus 139 ~l~~~--g-----~~dg~~~l~~~~~~~~~~~wd~~~~--~w~~~---g~v~~~~~~~~~~~~~~g~~~d~v~~vd~~dg 206 (563)
.+-.. + ..++....+.. .++.++.+|..++ .|... +.....+.. .+..+|.+...++++.++..+|
T Consensus 263 ~~W~~~~~~~~~p~~~~~~vyv~~-~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i-~g~~l~~~~~~G~l~~~d~~tG 340 (377)
T TIGR03300 263 VLWKRDASSYQGPAVDDNRLYVTD-ADGVVVALDRRSGSELWKNDELKYRQLTAPAV-VGGYLVVGDFEGYLHWLSREDG 340 (377)
T ss_pred EEEeeccCCccCceEeCCEEEEEC-CCCeEEEEECCCCcEEEccccccCCccccCEE-ECCEEEEEeCCCEEEEEECCCC
Confidence 33211 0 01222223333 3356677777655 36531 111111100 1345666666678888888778
Q ss_pred CeeeeecC
Q 008510 207 EPTRKLPY 214 (563)
Q Consensus 207 ~~~~~~~~ 214 (563)
+.+.+.+.
T Consensus 341 ~~~~~~~~ 348 (377)
T TIGR03300 341 SFVARLKT 348 (377)
T ss_pred CEEEEEEc
Confidence 77666543
No 273
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=97.36 E-value=0.0019 Score=67.18 Aligned_cols=100 Identities=12% Similarity=0.196 Sum_probs=75.5
Q ss_pred CEEEEEECCCcEEEEcC-CCceeEEEe------cCCCc-----EEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe
Q 008510 4 VGIISASHDCTIRLWAL-TGQVLMEMV------GHTAI-----VYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE 68 (563)
Q Consensus 4 ~~l~s~s~DgtIrlWd~-~g~~i~~l~------gH~~~-----V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~ 68 (563)
.+|++|+.||.|-.||. ....+.++. .|.+. |+++.|+.+| .++.|..+|.|.|+| ..+++..-.
T Consensus 188 gLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kd 267 (703)
T KOG2321|consen 188 GLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKD 267 (703)
T ss_pred ceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecc
Confidence 35777777999999998 544444443 34443 9999999999 899999999999999 555554444
Q ss_pred cCC--cEEEEEEccCCc--EEEEeCCCcEEEEEcCCCce
Q 008510 69 HPG--CVWDAKFLENGD--IVTACSDGVTRIWTVHSDKV 103 (563)
Q Consensus 69 h~~--~V~~v~~~p~g~--i~sgs~Dg~Irvwd~~~~~~ 103 (563)
|.. +|..+.|.+.+. -+..+....+++||-.+|+.
T Consensus 268 h~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~ 306 (703)
T KOG2321|consen 268 HGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKP 306 (703)
T ss_pred cCCccceeeecccccCCCceEEecchHHhhhcccccCCc
Confidence 654 899999988643 45555667899999999883
No 274
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=97.33 E-value=0.023 Score=58.83 Aligned_cols=139 Identities=16% Similarity=0.079 Sum_probs=88.3
Q ss_pred CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-e-EEEEeCCCcEEEEc--CCceeEEEe---c----
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-L-IVSGSEDRFAKIWK--DGVCVQSIE---H---- 69 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~-l~s~s~D~tvriWd--~~~~~~~l~---h---- 69 (563)
||++++.++.||.|.++|+ +++.++++..-. .-.++++++|| + ++++..++++.|+| +.+.++.+. .
T Consensus 47 Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~ 125 (369)
T PF02239_consen 47 DGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDG 125 (369)
T ss_dssp -SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTT
T ss_pred CCCEEEEEcCCCeEEEEECCcccEEEEEecCC-CcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccc
Confidence 5889999999999999999 899999987544 45789999999 4 55667889999999 778888876 1
Q ss_pred -CCcEEEEEEccCCc-EEEEeCC-CcEEEEEcCCCceeceeeec-------ccccccceeEE-eeccCCceEEEeCCCCc
Q 008510 70 -PGCVWDAKFLENGD-IVTACSD-GVTRIWTVHSDKVADSLELE-------AYASELSQYKL-CRKKVGGLKLEDLPGLE 138 (563)
Q Consensus 70 -~~~V~~v~~~p~g~-i~sgs~D-g~Irvwd~~~~~~~~~~~~~-------~~~~~v~~~~~-~~~~~~~i~~~d~~~~~ 138 (563)
...+..+..+|... ++..-.| +.|-+-|....+......+. ..-..-..+.+ .....+.+-++|..+..
T Consensus 126 ~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k 205 (369)
T PF02239_consen 126 PESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGK 205 (369)
T ss_dssp S---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTE
T ss_pred cCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccce
Confidence 12677888888777 5555454 77777787665422211111 11111223333 34455688888887765
Q ss_pred eee
Q 008510 139 ALQ 141 (563)
Q Consensus 139 ~l~ 141 (563)
...
T Consensus 206 ~v~ 208 (369)
T PF02239_consen 206 LVA 208 (369)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
No 275
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.29 E-value=0.001 Score=65.07 Aligned_cols=100 Identities=18% Similarity=0.283 Sum_probs=72.6
Q ss_pred CCEEEEEECCCcEEEEcC-C-Cc----------------------------------eeEEE-ecCCCcEEEEEEcCCCe
Q 008510 3 GVGIISASHDCTIRLWAL-T-GQ----------------------------------VLMEM-VGHTAIVYSIDSHASGL 45 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~-~-g~----------------------------------~i~~l-~gH~~~V~~v~~~p~g~ 45 (563)
+..|+...+|.+|++|.+ . +. |.+.+ .+|+..|.+++++.|+.
T Consensus 98 ~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~E 177 (433)
T KOG1354|consen 98 LAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKE 177 (433)
T ss_pred ccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccc
Confidence 356788889999999987 1 10 11222 36889999999999984
Q ss_pred EEEEeCCCcEEEEc---CCceeEEEe-c-------CCcEEEEEEccCCc--EEEEeCCCcEEEEEcCCCc
Q 008510 46 IVSGSEDRFAKIWK---DGVCVQSIE-H-------PGCVWDAKFLENGD--IVTACSDGVTRIWTVHSDK 102 (563)
Q Consensus 46 l~s~s~D~tvriWd---~~~~~~~l~-h-------~~~V~~v~~~p~g~--i~sgs~Dg~Irvwd~~~~~ 102 (563)
..-+..|-.|.+|+ ..++..... . +.-|++-.|+|..- ++-.++.|+||+-|+|..-
T Consensus 178 t~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~a 247 (433)
T KOG1354|consen 178 TFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSA 247 (433)
T ss_pred eEeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhh
Confidence 44446788999999 445443332 2 23588999999644 7888999999999999653
No 276
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=97.22 E-value=0.00042 Score=67.20 Aligned_cols=100 Identities=16% Similarity=0.188 Sum_probs=73.0
Q ss_pred CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC--eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEE
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWD 75 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g--~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~ 75 (563)
+|+++|+++.- .+-|-|. +-+..+.+. --+.|.-+.|..|. .+.....|+.|.+|+ ..+--..+. .++++.+
T Consensus 19 ~g~yiAs~~~y-rlviRd~~tlq~~qlf~-cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~ 96 (447)
T KOG4497|consen 19 CGNYIASLSRY-RLVIRDSETLQLHQLFL-CLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSS 96 (447)
T ss_pred CCCeeeeeeee-EEEEeccchhhHHHHHH-HHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCccee
Confidence 58899999755 6777776 333222221 12445667788777 566678899999999 555555666 6779999
Q ss_pred EEEccCCc--EEEEeCCCcEEEEEcCCCce
Q 008510 76 AKFLENGD--IVTACSDGVTRIWTVHSDKV 103 (563)
Q Consensus 76 v~~~p~g~--i~sgs~Dg~Irvwd~~~~~~ 103 (563)
++|+|+|+ +.+..-|-.|.||.+.+.+.
T Consensus 97 ~~WSPdgrhiL~tseF~lriTVWSL~t~~~ 126 (447)
T KOG4497|consen 97 ISWSPDGRHILLTSEFDLRITVWSLNTQKG 126 (447)
T ss_pred eeECCCcceEeeeecceeEEEEEEecccee
Confidence 99999998 56777899999999998763
No 277
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=97.21 E-value=0.0015 Score=63.89 Aligned_cols=83 Identities=20% Similarity=0.424 Sum_probs=68.5
Q ss_pred CceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc-CCc--eeEEEe-cCCcEEEEEEccCCc-EEEEeCCCcEEE
Q 008510 22 GQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-DGV--CVQSIE-HPGCVWDAKFLENGD-IVTACSDGVTRI 95 (563)
Q Consensus 22 g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd-~~~--~~~~l~-h~~~V~~v~~~p~g~-i~sgs~Dg~Irv 95 (563)
-.++.++.+|.+.+++++|.|.. .+.||..|..+.+|| .+. ....+. |.+.|..+...+--+ +.+++.||.|-+
T Consensus 187 ~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~ 266 (404)
T KOG1409|consen 187 CQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVV 266 (404)
T ss_pred CceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEE
Confidence 35678899999999999999976 999999999999999 332 223333 888999988887666 899999999999
Q ss_pred EEcCCCcee
Q 008510 96 WTVHSDKVA 104 (563)
Q Consensus 96 wd~~~~~~~ 104 (563)
|+.+-.+..
T Consensus 267 w~mn~~r~e 275 (404)
T KOG1409|consen 267 WNMNVKRVE 275 (404)
T ss_pred Eeccceeec
Confidence 999877643
No 278
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=97.19 E-value=0.066 Score=54.88 Aligned_cols=99 Identities=21% Similarity=0.157 Sum_probs=77.3
Q ss_pred CCCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCC-cEEEEc-CCceeEEEe-cCCcEEE
Q 008510 1 MPGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDR-FAKIWK-DGVCVQSIE-HPGCVWD 75 (563)
Q Consensus 1 ~~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~-tvriWd-~~~~~~~l~-h~~~V~~ 75 (563)
++|++++..| -|...+.+. .|-.++ -+|.+.|.-..+..++ .++.|..|| .+-|+| .+..+..+. .-+.|-+
T Consensus 330 ~~Gd~ia~VS-RGkaFi~~~~~~~~iq--v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~a 406 (668)
T COG4946 330 VNGDYIALVS-RGKAFIMRPWDGYSIQ--VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEA 406 (668)
T ss_pred CCCcEEEEEe-cCcEEEECCCCCeeEE--cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEE
Confidence 4788888888 456788877 454443 3788889888887776 788899998 899999 666666665 5568999
Q ss_pred EEEccCCc-EEEEeCCCcEEEEEcCCCc
Q 008510 76 AKFLENGD-IVTACSDGVTRIWTVHSDK 102 (563)
Q Consensus 76 v~~~p~g~-i~sgs~Dg~Irvwd~~~~~ 102 (563)
|+.+|+|. ++.+-....+-+.|++++.
T Consensus 407 v~vs~dGK~~vvaNdr~el~vididngn 434 (668)
T COG4946 407 VKVSPDGKKVVVANDRFELWVIDIDNGN 434 (668)
T ss_pred EEEcCCCcEEEEEcCceEEEEEEecCCC
Confidence 99999999 6777666788888999886
No 279
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=97.18 E-value=0.016 Score=55.12 Aligned_cols=97 Identities=18% Similarity=0.115 Sum_probs=73.0
Q ss_pred EEEEEECCCcEEEEcCCCceeEEEecCCCc--EEEEEEcCCC-eEEEEeCCCcEEEEc---CCceeEEEe---cCCcEEE
Q 008510 5 GIISASHDCTIRLWALTGQVLMEMVGHTAI--VYSIDSHASG-LIVSGSEDRFAKIWK---DGVCVQSIE---HPGCVWD 75 (563)
Q Consensus 5 ~l~s~s~DgtIrlWd~~g~~i~~l~gH~~~--V~~v~~~p~g-~l~s~s~D~tvriWd---~~~~~~~l~---h~~~V~~ 75 (563)
.+.-|++|.|+++.++++...+.. -|... +.++++++++ .+++.|.-+.|..|. +++.+..+. ..+.=.+
T Consensus 130 ~~~i~sndht~k~~~~~~~s~~~~-~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~ 208 (344)
T KOG4532|consen 130 PLNIASNDHTGKTMVVSGDSNKFA-VHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFY 208 (344)
T ss_pred ceeeccCCcceeEEEEecCcccce-eeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCcee
Confidence 356689999999999966544332 24433 7899999999 778888888888887 444433333 4446778
Q ss_pred EEEccCCc-EEEEeCCCcEEEEEcCCCc
Q 008510 76 AKFLENGD-IVTACSDGVTRIWTVHSDK 102 (563)
Q Consensus 76 v~~~p~g~-i~sgs~Dg~Irvwd~~~~~ 102 (563)
.+|+.+.. +|++..||++.|||+|...
T Consensus 209 ~S~s~~~~~FAv~~Qdg~~~I~DVR~~~ 236 (344)
T KOG4532|consen 209 NSFSENDLQFAVVFQDGTCAIYDVRNMA 236 (344)
T ss_pred eeeccCcceEEEEecCCcEEEEEecccc
Confidence 89998877 9999999999999999876
No 280
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.12 E-value=0.001 Score=70.59 Aligned_cols=100 Identities=16% Similarity=0.260 Sum_probs=77.1
Q ss_pred CCEEEEEECCCcEEEEcC-C----C-----------ceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCce
Q 008510 3 GVGIISASHDCTIRLWAL-T----G-----------QVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVC 63 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~-~----g-----------~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~ 63 (563)
..++++||.||.+++-.+ + + ..-+++.||.+.|.-+.|+.+. .+-|+.++|-|.||- .+.-
T Consensus 26 ~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW 105 (1189)
T KOG2041|consen 26 SGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSW 105 (1189)
T ss_pred CCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccH
Confidence 468999999999999876 1 1 1225789999999999999887 899999999999998 5543
Q ss_pred eEEEe---cCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCc
Q 008510 64 VQSIE---HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDK 102 (563)
Q Consensus 64 ~~~l~---h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~ 102 (563)
...+. ....|.+++|+.+|. |+..-.||.|-|=+++..|
T Consensus 106 ~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNR 148 (1189)
T KOG2041|consen 106 CEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNR 148 (1189)
T ss_pred HHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccce
Confidence 32222 445799999999887 7777777777776666554
No 281
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.12 E-value=0.015 Score=68.48 Aligned_cols=100 Identities=14% Similarity=0.122 Sum_probs=68.4
Q ss_pred CCEEEEEECCCcEEEEcCCCceeEEEecC---------C------CcEEEEEEcCCC--eEEEEeCCCcEEEEc--CCce
Q 008510 3 GVGIISASHDCTIRLWALTGQVLMEMVGH---------T------AIVYSIDSHASG--LIVSGSEDRFAKIWK--DGVC 63 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~~g~~i~~l~gH---------~------~~V~~v~~~p~g--~l~s~s~D~tvriWd--~~~~ 63 (563)
|..+++.+.++.|++||.....+.++.|. . .....++++|+| .+++-+.+++|++|| ++..
T Consensus 695 g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~ 774 (1057)
T PLN02919 695 EKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGS 774 (1057)
T ss_pred CeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcE
Confidence 56678888889999999833333344322 1 234569999997 566777789999999 3332
Q ss_pred eEEEe---------------c--------CCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCce
Q 008510 64 VQSIE---------------H--------PGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKV 103 (563)
Q Consensus 64 ~~~l~---------------h--------~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~ 103 (563)
..+. + -..-..+++.++|+ +++-..++.|++||..++..
T Consensus 775 -~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v 837 (1057)
T PLN02919 775 -RLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRV 837 (1057)
T ss_pred -EEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeE
Confidence 1111 0 01235888999999 67778889999999988763
No 282
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.08 E-value=0.0013 Score=65.56 Aligned_cols=88 Identities=11% Similarity=0.127 Sum_probs=71.5
Q ss_pred EEEEcC-CCceeEEEecCCCcEEEEEEcCCC--eEEEEeCCCcEEEEc--CCceeEEEecCCcEEEEEEccCCc--EEEE
Q 008510 15 IRLWAL-TGQVLMEMVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK--DGVCVQSIEHPGCVWDAKFLENGD--IVTA 87 (563)
Q Consensus 15 IrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g--~l~s~s~D~tvriWd--~~~~~~~l~h~~~V~~v~~~p~g~--i~sg 87 (563)
|++.+. +.+...-+.+|...|.+++|+|.. .+..++.+.+++|.| +..++.++.....+|+++|.-|.. |..|
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaG 254 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAG 254 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEe
Confidence 444444 444445567888999999999964 688999999999999 667777777668999999998766 8899
Q ss_pred eCCCcEEEEEcCCCc
Q 008510 88 CSDGVTRIWTVHSDK 102 (563)
Q Consensus 88 s~Dg~Irvwd~~~~~ 102 (563)
-..|.|.|||++..+
T Consensus 255 l~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 255 LQNGMVLVYDMRQPE 269 (463)
T ss_pred ccCceEEEEEccCCC
Confidence 999999999999765
No 283
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=97.02 E-value=0.24 Score=50.93 Aligned_cols=98 Identities=13% Similarity=0.132 Sum_probs=64.1
Q ss_pred CCCEEEEEE-CCCcEEEEcC--CCceeEE--Eec-----------CCCcEEEEEEcCCC-eEEE-EeCCCcEEEEc-C-C
Q 008510 2 PGVGIISAS-HDCTIRLWAL--TGQVLME--MVG-----------HTAIVYSIDSHASG-LIVS-GSEDRFAKIWK-D-G 61 (563)
Q Consensus 2 ~g~~l~s~s-~DgtIrlWd~--~g~~i~~--l~g-----------H~~~V~~v~~~p~g-~l~s-~s~D~tvriWd-~-~ 61 (563)
+|++++++. .+|+|.++++ +|.+... ... -....+++.++|+| .++. .-....|++|+ + .
T Consensus 97 ~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~ 176 (345)
T PF10282_consen 97 DGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDD 176 (345)
T ss_dssp TSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TT
T ss_pred CCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCC
Confidence 467777776 4899999999 3544332 111 13557899999998 4444 33344688888 2 2
Q ss_pred --ce--eEEEe--cCCcEEEEEEccCCc-E-EEEeCCCcEEEEEcC
Q 008510 62 --VC--VQSIE--HPGCVWDAKFLENGD-I-VTACSDGVTRIWTVH 99 (563)
Q Consensus 62 --~~--~~~l~--h~~~V~~v~~~p~g~-i-~sgs~Dg~Irvwd~~ 99 (563)
+. ...+. ....-+.++|+|+|+ + ++.-.+++|.+|++.
T Consensus 177 ~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~ 222 (345)
T PF10282_consen 177 TGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYD 222 (345)
T ss_dssp S-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred CceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeec
Confidence 22 23344 334889999999998 4 566678899999998
No 284
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.94 E-value=0.049 Score=52.42 Aligned_cols=103 Identities=20% Similarity=0.143 Sum_probs=70.4
Q ss_pred CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCCeEEEEeCCCcEEEEc--CCceeEEE-e-c-C-C-cE
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWK--DGVCVQSI-E-H-P-G-CV 73 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g~l~s~s~D~tvriWd--~~~~~~~l-~-h-~-~-~V 73 (563)
++..+++++.++.+..||. +|+.+.++.......... ...++.++.++.|+.++.+| +|+.+... . . + . ..
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~ 113 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVR 113 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeecccccccee-eecccccccccceeeeEecccCCcceeeeeccccccccccc
Confidence 4677888899999999998 999988877522211112 22344666677888999999 89988874 3 2 1 1 12
Q ss_pred EEEEEccCCc-EEEEeCCCcEEEEEcCCCceec
Q 008510 74 WDAKFLENGD-IVTACSDGVTRIWTVHSDKVAD 105 (563)
Q Consensus 74 ~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~ 105 (563)
........++ ++.++.++.|..+|.++|+..-
T Consensus 114 ~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w 146 (238)
T PF13360_consen 114 SSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLW 146 (238)
T ss_dssp --SEEEEETTEEEEEETCSEEEEEETTTTEEEE
T ss_pred cccCceEecCEEEEEeccCcEEEEecCCCcEEE
Confidence 2222222355 8888889999999999998643
No 285
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.92 E-value=0.0025 Score=40.77 Aligned_cols=37 Identities=27% Similarity=0.660 Sum_probs=31.5
Q ss_pred CceeEEEe-cCCcEEEEEEccCCc-EEEEeCCCcEEEEE
Q 008510 61 GVCVQSIE-HPGCVWDAKFLENGD-IVTACSDGVTRIWT 97 (563)
Q Consensus 61 ~~~~~~l~-h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd 97 (563)
++++..+. |...|+++.|.+++. +++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 34566666 778999999999877 89999999999996
No 286
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=96.91 E-value=0.00082 Score=71.62 Aligned_cols=77 Identities=27% Similarity=0.471 Sum_probs=62.7
Q ss_pred EEEECCCcEEEEcC--CCceeEEEecCCCcEEEEEEcCCC--eEEEEeCCCcEEEEc----CCceeEEEecCCcEEEEEE
Q 008510 7 ISASHDCTIRLWAL--TGQVLMEMVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK----DGVCVQSIEHPGCVWDAKF 78 (563)
Q Consensus 7 ~s~s~DgtIrlWd~--~g~~i~~l~gH~~~V~~v~~~p~g--~l~s~s~D~tvriWd----~~~~~~~l~h~~~V~~v~~ 78 (563)
...+....|++||. .+.++..+++|...|++++|+.-- .+.+++.||+|+.|| +.+..++++....||--.+
T Consensus 174 lasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~ 253 (1081)
T KOG0309|consen 174 LASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRY 253 (1081)
T ss_pred hhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccc
Confidence 34567788999999 578899999999999999998643 899999999999999 3344455556668999999
Q ss_pred ccCCc
Q 008510 79 LENGD 83 (563)
Q Consensus 79 ~p~g~ 83 (563)
.|-|+
T Consensus 254 ~Pfg~ 258 (1081)
T KOG0309|consen 254 LPFGE 258 (1081)
T ss_pred cccCc
Confidence 99665
No 287
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=96.80 E-value=0.023 Score=54.05 Aligned_cols=101 Identities=9% Similarity=-0.006 Sum_probs=74.1
Q ss_pred CCCEEEEEECCCcEEEEcC--CCc-eeEEE-ecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc---CCceeEEEe-----
Q 008510 2 PGVGIISASHDCTIRLWAL--TGQ-VLMEM-VGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK---DGVCVQSIE----- 68 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~--~g~-~i~~l-~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd---~~~~~~~l~----- 68 (563)
|+++.++.+....|..|.+ +++ .+++. ..-++.=.+.+|+... .+|++..||++-||| .+.+..++.
T Consensus 169 d~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~ 248 (344)
T KOG4532|consen 169 DPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPH 248 (344)
T ss_pred CCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCC
Confidence 5678888888889999998 444 34423 3334445678898877 999999999999999 344444332
Q ss_pred cCCcEEEEEEccCCc--EE-EEeCCCcEEEEEcCCCc
Q 008510 69 HPGCVWDAKFLENGD--IV-TACSDGVTRIWTVHSDK 102 (563)
Q Consensus 69 h~~~V~~v~~~p~g~--i~-sgs~Dg~Irvwd~~~~~ 102 (563)
|.+.++.+.|++.|- ++ ..=.=+.+.|-|+|+++
T Consensus 249 hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~ 285 (344)
T KOG4532|consen 249 HNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYV 285 (344)
T ss_pred CCCceEEEEecCCCcceEEEEecCcceEEEEEcccCc
Confidence 778999999998764 33 33334788999999887
No 288
>PRK01029 tolB translocation protein TolB; Provisional
Probab=96.76 E-value=0.016 Score=61.38 Aligned_cols=101 Identities=13% Similarity=0.077 Sum_probs=66.2
Q ss_pred CCCEEEEEE-CCCcEEEEcC--C--CceeEEEecCCCcEEEEEEcCCC-eEEEEeCC---CcEEEEc-CCceeEEEe-cC
Q 008510 2 PGVGIISAS-HDCTIRLWAL--T--GQVLMEMVGHTAIVYSIDSHASG-LIVSGSED---RFAKIWK-DGVCVQSIE-HP 70 (563)
Q Consensus 2 ~g~~l~s~s-~DgtIrlWd~--~--g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D---~tvriWd-~~~~~~~l~-h~ 70 (563)
||+.|+..+ .+|..++|.+ + +.....+..+...+.+..|+||| .++..+.+ ..|.+|| .+...+.+. ..
T Consensus 291 DG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~ 370 (428)
T PRK01029 291 DGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSP 370 (428)
T ss_pred CCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCC
Confidence 577777665 4676666654 2 33445565566677889999999 66655433 3588999 444445555 43
Q ss_pred CcEEEEEEccCCc-EEEEe-C--CCcEEEEEcCCCc
Q 008510 71 GCVWDAKFLENGD-IVTAC-S--DGVTRIWTVHSDK 102 (563)
Q Consensus 71 ~~V~~v~~~p~g~-i~sgs-~--Dg~Irvwd~~~~~ 102 (563)
..+.+..|+|||+ |+..+ . +..|++||+.+++
T Consensus 371 ~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~ 406 (428)
T PRK01029 371 ENKESPSWAIDSLHLVYSAGNSNESELYLISLITKK 406 (428)
T ss_pred CCccceEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 4678899999998 55333 2 3467788887765
No 289
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=96.75 E-value=0.0057 Score=59.12 Aligned_cols=99 Identities=14% Similarity=0.272 Sum_probs=66.8
Q ss_pred CCEEEEEECCCcEEEEcC--CC----ceeEEEecCCC------------cEEEEEEcCCC---eEEEEeCCCcEEEEc--
Q 008510 3 GVGIISASHDCTIRLWAL--TG----QVLMEMVGHTA------------IVYSIDSHASG---LIVSGSEDRFAKIWK-- 59 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~--~g----~~i~~l~gH~~------------~V~~v~~~p~g---~l~s~s~D~tvriWd-- 59 (563)
|.++++|...|.|-++.- .. +...++++|.. .|..+.|..++ .+.-.+.|+++++|.
T Consensus 38 g~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNdktiKlWKiy 117 (460)
T COG5170 38 GLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIY 117 (460)
T ss_pred cceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecCCceeeeeeee
Confidence 678999988899999976 22 33455777763 25667776553 677778999999997
Q ss_pred CC-------------------ce-----------------------eEEEe--cCCcEEEEEEccCCcEEEEeCCCcEEE
Q 008510 60 DG-------------------VC-----------------------VQSIE--HPGCVWDAKFLENGDIVTACSDGVTRI 95 (563)
Q Consensus 60 ~~-------------------~~-----------------------~~~l~--h~~~V~~v~~~p~g~i~sgs~Dg~Irv 95 (563)
.. .. -+... |+..+.+++|..+....-.+.|=.|.+
T Consensus 118 eknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~et~lSaDdLrINL 197 (460)
T COG5170 118 EKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKETLLSADDLRINL 197 (460)
T ss_pred cccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchheeeeccceeeee
Confidence 11 00 01111 566677888887777555566778888
Q ss_pred EEcCCC
Q 008510 96 WTVHSD 101 (563)
Q Consensus 96 wd~~~~ 101 (563)
|++.-.
T Consensus 198 Wnl~i~ 203 (460)
T COG5170 198 WNLEII 203 (460)
T ss_pred cccccc
Confidence 887643
No 290
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=96.72 E-value=0.051 Score=56.79 Aligned_cols=88 Identities=25% Similarity=0.249 Sum_probs=61.9
Q ss_pred cEEEEcCCCceeEEEecCCCcEEEEEEcCCC-eE--EEEeCCCcEEEEc-CCceeEEEecCCcEEEEEEccCCc-EEEEe
Q 008510 14 TIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LI--VSGSEDRFAKIWK-DGVCVQSIEHPGCVWDAKFLENGD-IVTAC 88 (563)
Q Consensus 14 tIrlWd~~g~~i~~l~gH~~~V~~v~~~p~g-~l--~s~s~D~tvriWd-~~~~~~~l~h~~~V~~v~~~p~g~-i~sgs 88 (563)
++.+.+.+|+....--...++|+++.|+|+| .| +-|-.-.++-|+| .+..+..+. ++.-.++-|+|.|+ |+.+|
T Consensus 252 ~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~df~-egpRN~~~fnp~g~ii~lAG 330 (566)
T KOG2315|consen 252 TLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVFDFP-EGPRNTAFFNPHGNIILLAG 330 (566)
T ss_pred eEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEeEeCC-CCCccceEECCCCCEEEEee
Confidence 4444454433222212247899999999999 44 4456668899999 888876664 34667788999999 56555
Q ss_pred CC---CcEEEEEcCCCc
Q 008510 89 SD---GVTRIWTVHSDK 102 (563)
Q Consensus 89 ~D---g~Irvwd~~~~~ 102 (563)
-+ |.+-|||+.+.+
T Consensus 331 FGNL~G~mEvwDv~n~K 347 (566)
T KOG2315|consen 331 FGNLPGDMEVWDVPNRK 347 (566)
T ss_pred cCCCCCceEEEeccchh
Confidence 54 789999998866
No 291
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=96.70 E-value=0.043 Score=56.20 Aligned_cols=104 Identities=14% Similarity=0.214 Sum_probs=79.5
Q ss_pred CCCEEEEEECCC-cEEEEcCCCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc-CCceeEEEe--cCCcEEEE
Q 008510 2 PGVGIISASHDC-TIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-DGVCVQSIE--HPGCVWDA 76 (563)
Q Consensus 2 ~g~~l~s~s~Dg-tIrlWd~~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd-~~~~~~~l~--h~~~V~~v 76 (563)
+++.++-|.+|| .+-++|..|..++.+.+.-+.|.++..+|+| .++.+.....+.+.| +....+.+. ..+-|...
T Consensus 370 ~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf 449 (668)
T COG4946 370 DPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDF 449 (668)
T ss_pred CCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEE
Confidence 345688899999 8999999777777888888999999999999 566555555677777 434445555 45589999
Q ss_pred EEccCCc-EEEEeCC----CcEEEEEcCCCceec
Q 008510 77 KFLENGD-IVTACSD----GVTRIWTVHSDKVAD 105 (563)
Q Consensus 77 ~~~p~g~-i~sgs~D----g~Irvwd~~~~~~~~ 105 (563)
.|+|+++ ||-+--+ ..|++||...++...
T Consensus 450 ~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~ 483 (668)
T COG4946 450 DWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYD 483 (668)
T ss_pred EEcCCceeEEEecCcceeeeeEEEEecCCCeEEE
Confidence 9999999 7755444 468999999887543
No 292
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=96.52 E-value=0.79 Score=46.93 Aligned_cols=87 Identities=8% Similarity=0.050 Sum_probs=57.4
Q ss_pred CCCcEEEEcC-CCceeEEEecC-------CCcEEEEEEcCCC-eEEEEe-C-CCcEEEEc--CCceeEEEecCCcEEEEE
Q 008510 11 HDCTIRLWAL-TGQVLMEMVGH-------TAIVYSIDSHASG-LIVSGS-E-DRFAKIWK--DGVCVQSIEHPGCVWDAK 77 (563)
Q Consensus 11 ~DgtIrlWd~-~g~~i~~l~gH-------~~~V~~v~~~p~g-~l~s~s-~-D~tvriWd--~~~~~~~l~h~~~V~~v~ 77 (563)
.+..|.+||. +++.++++.-- ...-..++++||| .+.... . +..|-+.| +++.+..+.-+++.+-+.
T Consensus 75 ~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~ 154 (352)
T TIGR02658 75 RTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFP 154 (352)
T ss_pred CCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEE
Confidence 4789999999 89998888632 2233478899999 555554 3 68899999 888888888665444333
Q ss_pred EccCCcEEEEeCCCcEEEEEc
Q 008510 78 FLENGDIVTACSDGVTRIWTV 98 (563)
Q Consensus 78 ~~p~g~i~sgs~Dg~Irvwd~ 98 (563)
.++ ....+-|.||......+
T Consensus 155 t~e-~~~~~~~~Dg~~~~v~~ 174 (352)
T TIGR02658 155 TAN-DTFFMHCRDGSLAKVGY 174 (352)
T ss_pred ecC-CccEEEeecCceEEEEe
Confidence 322 22334455555555444
No 293
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=96.32 E-value=0.23 Score=57.62 Aligned_cols=108 Identities=15% Similarity=0.180 Sum_probs=76.7
Q ss_pred CCCEEEEEEC---C---CcEEEEcCCCceeEEEecCCCcEEEEEEcCCC-eEEEEeC---CCcEEEEc-CCceeEEEe--
Q 008510 2 PGVGIISASH---D---CTIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVSGSE---DRFAKIWK-DGVCVQSIE-- 68 (563)
Q Consensus 2 ~g~~l~s~s~---D---gtIrlWd~~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~---D~tvriWd-~~~~~~~l~-- 68 (563)
||.+||+.+- + ..+|||+-+|....+-+.-.+--.+++|.|.| .+++... ...|.+|. +|-.-..|.
T Consensus 220 DG~yFAVss~~~~~~~~R~iRVy~ReG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~ 299 (928)
T PF04762_consen 220 DGEYFAVSSVEPETGSRRVIRVYSREGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLR 299 (928)
T ss_pred CCcEEEEEEEEcCCCceeEEEEECCCceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecC
Confidence 7889998875 3 57999999887665554333444688999999 6776654 34577777 554444444
Q ss_pred ---cCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeec
Q 008510 69 ---HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELE 110 (563)
Q Consensus 69 ---h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~ 110 (563)
....|..++|+++++ +|....| .|.+|......+.-..++.
T Consensus 300 ~~~~~~~v~~l~Wn~ds~iLAv~~~~-~vqLWt~~NYHWYLKqei~ 344 (928)
T PF04762_consen 300 FDPEEEKVIELAWNSDSEILAVWLED-RVQLWTRSNYHWYLKQEIR 344 (928)
T ss_pred CCCCCceeeEEEECCCCCEEEEEecC-CceEEEeeCCEEEEEEEEE
Confidence 234899999999999 5555544 5999999998876555554
No 294
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=96.32 E-value=0.84 Score=44.25 Aligned_cols=213 Identities=13% Similarity=0.189 Sum_probs=107.2
Q ss_pred CCCEEEEEECCCcEEEEcC-C--CceeEEEecCCC---cEEEEEEcCCC-eEEEEeCCCcEEEEc-CCceeEEEe--c--
Q 008510 2 PGVGIISASHDCTIRLWAL-T--GQVLMEMVGHTA---IVYSIDSHASG-LIVSGSEDRFAKIWK-DGVCVQSIE--H-- 69 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~--g~~i~~l~gH~~---~V~~v~~~p~g-~l~s~s~D~tvriWd-~~~~~~~l~--h-- 69 (563)
+|+.+|. =.|..|-+-+. + ..++.+..-+.+ .=.-++|+||+ .+|.+...|+|+++| .|..+..+. +
T Consensus 8 ~Gk~lAi-~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~~ 86 (282)
T PF15492_consen 8 DGKLLAI-LQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPPAMSF 86 (282)
T ss_pred CCcEEEE-EeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCccccc
Confidence 3444443 34666666655 2 223333332222 23579999999 888888899999999 777777665 1
Q ss_pred ----CCcEEEEEEccCC-------cEEEEeCCCcEEEEEcCCCceeceeeecccccccceeEEeeccCCce--EEEeCCC
Q 008510 70 ----PGCVWDAKFLENG-------DIVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLCRKKVGGL--KLEDLPG 136 (563)
Q Consensus 70 ----~~~V~~v~~~p~g-------~i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i--~~~d~~~ 136 (563)
...|..+.|.+.- +++.-..+|.++=|-+..++...-.+... +.+.......| -+|+ ++
T Consensus 87 ~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hs-------fsf~~~yp~Gi~~~vy~-p~ 158 (282)
T PF15492_consen 87 PGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHS-------FSFSSHYPHGINSAVYH-PK 158 (282)
T ss_pred CCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEE-------EEecccCCCceeEEEEc-CC
Confidence 2356666676522 25666677777777654322000001111 11111100111 1122 33
Q ss_pred CceeeecccCCCeEEEEecCCCeEEEEEecccce--EEEeCcE---eeCCC--CC------CCceeecCcccCcEEEEEc
Q 008510 137 LEALQIPGTNAGQTKVVREGDNGVAYSWDMKEQK--WDKLGEV---VDGPD--DG------MNRPILDGIQYDYVFDVDI 203 (563)
Q Consensus 137 ~~~l~~~g~~dg~~~l~~~~~~~~~~~wd~~~~~--w~~~g~v---~~~~~--~~------~~~~~~~g~~~d~v~~vd~ 203 (563)
...+.+.|....+........-+ ...|..-.+. +..+... +.... .+ .+.....+.+.|+||.+.+
T Consensus 159 h~LLlVgG~~~~~~~~s~a~~~G-LtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSl 237 (282)
T PF15492_consen 159 HRLLLVGGCEQNQDGMSKASSCG-LTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSL 237 (282)
T ss_pred CCEEEEeccCCCCCccccccccC-ceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEE
Confidence 34444444443332221111111 1123321111 1111100 00000 00 0111234566799999999
Q ss_pred -CCCCeeeeecCCCCCChhHHH
Q 008510 204 -GDGEPTRKLPYNRSDNPYDAA 224 (563)
Q Consensus 204 -~dg~~~~~~~~n~~~~~w~~a 224 (563)
+||..++...+++.+-+|.+-
T Consensus 238 SPdg~~La~ih~sG~lsLW~iP 259 (282)
T PF15492_consen 238 SPDGSLLACIHFSGSLSLWEIP 259 (282)
T ss_pred CCCCCEEEEEEcCCeEEEEecC
Confidence 999999999999999999874
No 295
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=96.31 E-value=0.053 Score=56.62 Aligned_cols=93 Identities=14% Similarity=0.217 Sum_probs=53.7
Q ss_pred EECCCcEEEEcCCCceeEEEecCCC----cEEEEEEcCCC--e--EEEEeCCC---------cEEEEc-CC-ceeEEEec
Q 008510 9 ASHDCTIRLWALTGQVLMEMVGHTA----IVYSIDSHASG--L--IVSGSEDR---------FAKIWK-DG-VCVQSIEH 69 (563)
Q Consensus 9 ~s~DgtIrlWd~~g~~i~~l~gH~~----~V~~v~~~p~g--~--l~s~s~D~---------tvriWd-~~-~~~~~l~h 69 (563)
.|.-+.||||...........+..+ .=..+.|++-| . +++.--|. ++.+.+ +| .+.-.+..
T Consensus 190 kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k 269 (566)
T KOG2315|consen 190 KGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLK 269 (566)
T ss_pred CCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCC
Confidence 3445668888773111111111111 11246788765 3 44444444 455555 32 33334446
Q ss_pred CCcEEEEEEccCCc---EEEEeCCCcEEEEEcCCC
Q 008510 70 PGCVWDAKFLENGD---IVTACSDGVTRIWTVHSD 101 (563)
Q Consensus 70 ~~~V~~v~~~p~g~---i~sgs~Dg~Irvwd~~~~ 101 (563)
.++|+++.|+|+|+ ++-|=.=..+-|||++-.
T Consensus 270 ~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~ 304 (566)
T KOG2315|consen 270 EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK 304 (566)
T ss_pred CCCceEEEECCCCCEEEEEEecccceEEEEcCCCC
Confidence 78999999999997 455666678899998754
No 296
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.26 E-value=0.69 Score=51.15 Aligned_cols=95 Identities=17% Similarity=0.199 Sum_probs=68.0
Q ss_pred CCEEEEEECCCcEEEEcCCCceeEEEecCCCc-EEEEEEcCCC-eEEEEeCCCc-----EEEEc----C----CceeEEE
Q 008510 3 GVGIISASHDCTIRLWALTGQVLMEMVGHTAI-VYSIDSHASG-LIVSGSEDRF-----AKIWK----D----GVCVQSI 67 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~~g~~i~~l~gH~~~-V~~v~~~p~g-~l~s~s~D~t-----vriWd----~----~~~~~~l 67 (563)
+..++-|++||.|-+.+-.-+.++.++.|... |..+-...+. .+++-++|+. ++||+ + ..|+.+.
T Consensus 35 ~~~vvigt~~G~V~~Ln~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ 114 (933)
T KOG2114|consen 35 TGSVVIGTADGRVVILNSSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEH 114 (933)
T ss_pred CceEEEeeccccEEEecccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeee
Confidence 46788899999887777666677888888776 4444333333 7899888864 99999 1 3455222
Q ss_pred ---ec-----CCcEEEEEEccCCc-EEEEeCCCcEEEEE
Q 008510 68 ---EH-----PGCVWDAKFLENGD-IVTACSDGVTRIWT 97 (563)
Q Consensus 68 ---~h-----~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd 97 (563)
+| +.++.+++++.+-. ||+|=.||.|..+.
T Consensus 115 ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~ 153 (933)
T KOG2114|consen 115 RIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYK 153 (933)
T ss_pred eeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEc
Confidence 22 34788999988866 89999999998875
No 297
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=96.23 E-value=0.036 Score=61.09 Aligned_cols=94 Identities=13% Similarity=0.184 Sum_probs=49.7
Q ss_pred CCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCCeEEEEeC---------CCcEEEEc--CCceeEEEecC
Q 008510 3 GVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASGLIVSGSE---------DRFAKIWK--DGVCVQSIEHP 70 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g~l~s~s~---------D~tvriWd--~~~~~~~l~h~ 70 (563)
++.+.+|...|+|.+-|. +.+.++++..|++.|.++++..+ .++|||- |..|+||| .-+.+-.++.+
T Consensus 187 nr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv~GN-lLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~ 265 (1118)
T KOG1275|consen 187 NRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDVQGN-LLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFP 265 (1118)
T ss_pred CcEEEeecccceEEeecCCcCceeeeeeccccceeeeeccCC-eEEEeecccccccccccchhhhhhhhhhhccCCcccc
Confidence 455666666666666666 56666666666666666554322 5566553 45566666 33333333311
Q ss_pred CcEEEEEEccC--CcEEEEeCCCcEEEEE
Q 008510 71 GCVWDAKFLEN--GDIVTACSDGVTRIWT 97 (563)
Q Consensus 71 ~~V~~v~~~p~--g~i~sgs~Dg~Irvwd 97 (563)
..-.-+.|+|. .+++..+..|...+-|
T Consensus 266 ~~P~flrf~Psl~t~~~V~S~sGq~q~vd 294 (1118)
T KOG1275|consen 266 YGPQFLRFHPSLTTRLAVTSQSGQFQFVD 294 (1118)
T ss_pred cCchhhhhcccccceEEEEecccceeecc
Confidence 11233445553 2255555555555555
No 298
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=96.22 E-value=0.12 Score=51.06 Aligned_cols=130 Identities=18% Similarity=0.298 Sum_probs=90.5
Q ss_pred CEEEEEECCCcEEEEcCC-----CceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc---CC-------------
Q 008510 4 VGIISASHDCTIRLWALT-----GQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK---DG------------- 61 (563)
Q Consensus 4 ~~l~s~s~DgtIrlWd~~-----g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd---~~------------- 61 (563)
++|+.|-..|++.-+.+. -...+.+..|.++|..+-|+-.. .+++++.|..+- |- .+
T Consensus 81 ~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~-~hc~e~~~~lg~Y~~~~~~t 159 (404)
T KOG1409|consen 81 RRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFA-WHCTESGNRLGGYNFETPAS 159 (404)
T ss_pred eEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceE-EEeeccCCcccceEeeccCC
Confidence 467777788999888872 23566777899999998887665 788888876543 43 10
Q ss_pred ----------------------------ceeEEEe-cCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeecc
Q 008510 62 ----------------------------VCVQSIE-HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEA 111 (563)
Q Consensus 62 ----------------------------~~~~~l~-h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~ 111 (563)
..+.++. |.+.+.+.+|.|... +.+|..|..|-+||+--.+.. ..++..
T Consensus 160 ~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~-~~el~g 238 (404)
T KOG1409|consen 160 ALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGT-AYELQG 238 (404)
T ss_pred CCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcce-eeeecc
Confidence 0122333 778899999998655 899999999999998765522 223344
Q ss_pred ccccc--------ceeEEeeccCCceEEEeCC
Q 008510 112 YASEL--------SQYKLCRKKVGGLKLEDLP 135 (563)
Q Consensus 112 ~~~~v--------~~~~~~~~~~~~i~~~d~~ 135 (563)
+.+.+ ....++.+.+|.|.+|++.
T Consensus 239 h~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn 270 (404)
T KOG1409|consen 239 HNDKVQALSYAQHTRQLISCGEDGGIVVWNMN 270 (404)
T ss_pred chhhhhhhhhhhhheeeeeccCCCeEEEEecc
Confidence 44332 3556677888888888885
No 299
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.05 E-value=0.084 Score=55.17 Aligned_cols=131 Identities=15% Similarity=0.173 Sum_probs=83.9
Q ss_pred EEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEecCCcEEEEEEccCCc-EEEEeC-----------CCcEEEEEcC
Q 008510 35 VYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIEHPGCVWDAKFLENGD-IVTACS-----------DGVTRIWTVH 99 (563)
Q Consensus 35 V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~h~~~V~~v~~~p~g~-i~sgs~-----------Dg~Irvwd~~ 99 (563)
-+-+.|||.| +++|--.- -|.+|- +...++.+.|+ .|.-+.|+|+.+ ++|-+. ...++|||++
T Consensus 213 etyv~wSP~GTYL~t~Hk~-GI~lWGG~~f~r~~RF~Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~ 290 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQ-GIALWGGESFDRIQRFYHP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIA 290 (698)
T ss_pred eeeEEecCCceEEEEEecc-ceeeecCccHHHHHhccCC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEcc
Confidence 3568999999 88876544 488998 66677778888 488899999987 776542 2579999999
Q ss_pred CCceeceeeec--------ccccccceeEEeeccCCceEEEeCCCCceeeec-ccCCCeEEEEecCCCeEEEEEecc
Q 008510 100 SDKVADSLELE--------AYASELSQYKLCRKKVGGLKLEDLPGLEALQIP-GTNAGQTKVVREGDNGVAYSWDMK 167 (563)
Q Consensus 100 ~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~~i~~~d~~~~~~l~~~-g~~dg~~~l~~~~~~~~~~~wd~~ 167 (563)
+|........- -|.-+.+...++.-....|.+++.+....+... -..+|...+.+++...+...|...
T Consensus 291 tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe 367 (698)
T KOG2314|consen 291 TGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPE 367 (698)
T ss_pred ccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCceeeecccccCCccccCcccCCCcceEEEEccc
Confidence 99854333321 111122222333334467888887765444332 445565556666665665666543
No 300
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=96.05 E-value=0.35 Score=49.43 Aligned_cols=95 Identities=11% Similarity=0.179 Sum_probs=70.4
Q ss_pred CcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC--eEEEEe---------CCCcEEEEc--CCceeEEEecCC-------
Q 008510 13 CTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG--LIVSGS---------EDRFAKIWK--DGVCVQSIEHPG------- 71 (563)
Q Consensus 13 gtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g--~l~s~s---------~D~tvriWd--~~~~~~~l~h~~------- 71 (563)
++|.+.|. +++.+.++..-..+- .+ ++||| ..++.+ .+..|.+|| +.+.+..+..+.
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~ 104 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG 104 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence 89999999 788888886433332 24 89998 455556 688999999 888888887433
Q ss_pred -cEEEEEEccCCc-EEEEe-C-CCcEEEEEcCCCceeceeee
Q 008510 72 -CVWDAKFLENGD-IVTAC-S-DGVTRIWTVHSDKVADSLEL 109 (563)
Q Consensus 72 -~V~~v~~~p~g~-i~sgs-~-Dg~Irvwd~~~~~~~~~~~~ 109 (563)
.-+.++++|||+ +...- . +..|-+.|+.+++.......
T Consensus 105 ~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v 146 (352)
T TIGR02658 105 TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV 146 (352)
T ss_pred CccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC
Confidence 344889999999 55443 3 79999999999986554443
No 301
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=96.05 E-value=2.1 Score=43.92 Aligned_cols=101 Identities=12% Similarity=0.224 Sum_probs=64.8
Q ss_pred CCCEEEEEEC----CCcEEEEcC--C-Cc--eeEEEecCCCcEEEEEEcCCC-eEE-EEeCCCcEEEEc---CCcee---
Q 008510 2 PGVGIISASH----DCTIRLWAL--T-GQ--VLMEMVGHTAIVYSIDSHASG-LIV-SGSEDRFAKIWK---DGVCV--- 64 (563)
Q Consensus 2 ~g~~l~s~s~----DgtIrlWd~--~-g~--~i~~l~gH~~~V~~v~~~p~g-~l~-s~s~D~tvriWd---~~~~~--- 64 (563)
++++|.++.. ++.|..|++ + |+ .+.+.......-+.++++|++ .++ +.-.+++|.+++ ++...
T Consensus 47 ~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~ 126 (345)
T PF10282_consen 47 DGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVV 126 (345)
T ss_dssp TSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEE
T ss_pred CCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceee
Confidence 4667777766 578999988 2 43 334443233445678999998 544 445689999999 34332
Q ss_pred EEEec-----------CCcEEEEEEccCCc-EEE-EeCCCcEEEEEcCCCc
Q 008510 65 QSIEH-----------PGCVWDAKFLENGD-IVT-ACSDGVTRIWTVHSDK 102 (563)
Q Consensus 65 ~~l~h-----------~~~V~~v~~~p~g~-i~s-gs~Dg~Irvwd~~~~~ 102 (563)
+.+.| ....+++.++|+|+ +++ .-....|++|+++...
T Consensus 127 ~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~ 177 (345)
T PF10282_consen 127 QTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDT 177 (345)
T ss_dssp EEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS
T ss_pred eecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCC
Confidence 23322 13688999999998 443 3345689999997765
No 302
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=96.04 E-value=1.3 Score=46.36 Aligned_cols=208 Identities=13% Similarity=0.125 Sum_probs=110.9
Q ss_pred CCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCCeEEEEeCCCcEEEEc--CCceeEEEecCCcEEEE--E
Q 008510 3 GVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWK--DGVCVQSIEHPGCVWDA--K 77 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g~l~s~s~D~tvriWd--~~~~~~~l~h~~~V~~v--~ 77 (563)
++.++.++.+|.+.-+|. +|+.+.+..... .+.+--...++.++.+..|+.+.-+| +|+.+...........+ .
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~ 198 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAG-EALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGE 198 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCC-ceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCC
Confidence 556777888999999998 899888776433 23321111245666677889999999 88888777632211000 0
Q ss_pred Ecc---CCcEEEEeCCCcEEEEEcCCCceeceeeecc------------cccc---cceeEEeeccCCceEEEeCCCCce
Q 008510 78 FLE---NGDIVTACSDGVTRIWTVHSDKVADSLELEA------------YASE---LSQYKLCRKKVGGLKLEDLPGLEA 139 (563)
Q Consensus 78 ~~p---~g~i~sgs~Dg~Irvwd~~~~~~~~~~~~~~------------~~~~---v~~~~~~~~~~~~i~~~d~~~~~~ 139 (563)
.+| ++.++.++.+|.+..+|..+++..-...+.. .... .....+....++.+...|..+++.
T Consensus 199 ~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~ 278 (394)
T PRK11138 199 SAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQI 278 (394)
T ss_pred CCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCE
Confidence 122 3457778889999999988886432211110 0000 123334444556666666655543
Q ss_pred eeec--ccC-----CCeEEEEecCCCeEEEEEecccc--eEEEe---CcEeeCCCCCCCceeecCcccCcEEEEEcCCCC
Q 008510 140 LQIP--GTN-----AGQTKVVREGDNGVAYSWDMKEQ--KWDKL---GEVVDGPDDGMNRPILDGIQYDYVFDVDIGDGE 207 (563)
Q Consensus 140 l~~~--g~~-----dg~~~l~~~~~~~~~~~wd~~~~--~w~~~---g~v~~~~~~~~~~~~~~g~~~d~v~~vd~~dg~ 207 (563)
+=.. ++. ++....+.+. ++.++..|..++ .|... +.....+. -.+..+|.+...++++.++..+|+
T Consensus 279 ~W~~~~~~~~~~~~~~~~vy~~~~-~g~l~ald~~tG~~~W~~~~~~~~~~~sp~-v~~g~l~v~~~~G~l~~ld~~tG~ 356 (394)
T PRK11138 279 VWKREYGSVNDFAVDGGRIYLVDQ-NDRVYALDTRGGVELWSQSDLLHRLLTAPV-LYNGYLVVGDSEGYLHWINREDGR 356 (394)
T ss_pred EEeecCCCccCcEEECCEEEEEcC-CCeEEEEECCCCcEEEcccccCCCcccCCE-EECCEEEEEeCCCEEEEEECCCCC
Confidence 2111 111 1112222222 244555565544 35321 11111110 013445666666788888888887
Q ss_pred eeeeec
Q 008510 208 PTRKLP 213 (563)
Q Consensus 208 ~~~~~~ 213 (563)
.+.+..
T Consensus 357 ~~~~~~ 362 (394)
T PRK11138 357 FVAQQK 362 (394)
T ss_pred EEEEEE
Confidence 665543
No 303
>PRK04043 tolB translocation protein TolB; Provisional
Probab=96.01 E-value=0.73 Score=48.70 Aligned_cols=100 Identities=16% Similarity=0.207 Sum_probs=61.0
Q ss_pred CCCE-EEEEECC---CcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-e-EEEEeCCCc--EEEEc-CCceeEEEe-cC
Q 008510 2 PGVG-IISASHD---CTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-L-IVSGSEDRF--AKIWK-DGVCVQSIE-HP 70 (563)
Q Consensus 2 ~g~~-l~s~s~D---gtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~-l~s~s~D~t--vriWd-~~~~~~~l~-h~ 70 (563)
||+. ++..+.+ ..|.++|+ +|+. ..+....+.+...+|+||| . +++.+.++. +.+++ .+...+.++ ++
T Consensus 198 DG~~~i~y~s~~~~~~~Iyv~dl~tg~~-~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~ 276 (419)
T PRK04043 198 KEQTAFYYTSYGERKPTLYKYNLYTGKK-EKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQITNYP 276 (419)
T ss_pred CCCcEEEEEEccCCCCEEEEEECCCCcE-EEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEEcccCC
Confidence 4553 5544444 45777888 5544 3333455666778899999 4 445555554 55556 444455565 44
Q ss_pred CcEEEEEEccCCc-EEEEeC-CC--cEEEEEcCCCc
Q 008510 71 GCVWDAKFLENGD-IVTACS-DG--VTRIWTVHSDK 102 (563)
Q Consensus 71 ~~V~~v~~~p~g~-i~sgs~-Dg--~Irvwd~~~~~ 102 (563)
.....-.|+|||+ |+-.+. .+ .|.+.|+.+++
T Consensus 277 ~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~ 312 (419)
T PRK04043 277 GIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGS 312 (419)
T ss_pred CccCccEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 4445568999998 654442 23 57778887776
No 304
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.96 E-value=0.013 Score=59.57 Aligned_cols=99 Identities=19% Similarity=0.200 Sum_probs=71.0
Q ss_pred CEEEEEECCCcEEEEcCCC----ceeEEEecCCCcEEEEEEcCCC-eEEEEeC-CCcEEEEc--CCceeEEEe---cCCc
Q 008510 4 VGIISASHDCTIRLWALTG----QVLMEMVGHTAIVYSIDSHASG-LIVSGSE-DRFAKIWK--DGVCVQSIE---HPGC 72 (563)
Q Consensus 4 ~~l~s~s~DgtIrlWd~~g----~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~-D~tvriWd--~~~~~~~l~---h~~~ 72 (563)
+++.++|.||.+|.|..++ +.++.+..|-+.|.+++.+-+| .+.|.+. |..+|++| +...+.-+. .|+.
T Consensus 21 ~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~ 100 (558)
T KOG0882|consen 21 KFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGF 100 (558)
T ss_pred heEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCc
Confidence 5789999999999999743 4566778899999999999999 8888788 99999999 444433333 5655
Q ss_pred EEEEEEccCCc--EEE-EeCCCcEEEEEcCCCc
Q 008510 73 VWDAKFLENGD--IVT-ACSDGVTRIWTVHSDK 102 (563)
Q Consensus 73 V~~v~~~p~g~--i~s-gs~Dg~Irvwd~~~~~ 102 (563)
+.++.-..+-. |+. .-.++.|.|+|-+..-
T Consensus 101 a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~ 133 (558)
T KOG0882|consen 101 AEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDF 133 (558)
T ss_pred eEEecCCCCeeeeEEeecccCCCcEEECCcCCc
Confidence 54442211211 333 3457889999987664
No 305
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=95.96 E-value=0.04 Score=53.49 Aligned_cols=74 Identities=14% Similarity=0.200 Sum_probs=53.4
Q ss_pred ecCCCcEEEEEEcCCCeEEEEeCCCcEEEEc---CCceeEEEe---c-----CCcEEEEEEccCCc--EEEEeCCCcEEE
Q 008510 29 VGHTAIVYSIDSHASGLIVSGSEDRFAKIWK---DGVCVQSIE---H-----PGCVWDAKFLENGD--IVTACSDGVTRI 95 (563)
Q Consensus 29 ~gH~~~V~~v~~~p~g~l~s~s~D~tvriWd---~~~~~~~l~---h-----~~~V~~v~~~p~g~--i~sgs~Dg~Irv 95 (563)
..|...|.+++|+.|....-++.|-.|.+|+ ...+..... | ..-|.+..|+|... +.-.++.|.|++
T Consensus 169 NaH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl 248 (460)
T COG5170 169 NAHPYHINSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKL 248 (460)
T ss_pred ccceeEeeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEe
Confidence 4678888999999887444456788999999 333333222 2 23588899999644 677788999999
Q ss_pred EEcCCCc
Q 008510 96 WTVHSDK 102 (563)
Q Consensus 96 wd~~~~~ 102 (563)
-|+|...
T Consensus 249 ~DlRq~a 255 (460)
T COG5170 249 NDLRQSA 255 (460)
T ss_pred hhhhhhh
Confidence 9999654
No 306
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=95.93 E-value=0.67 Score=48.58 Aligned_cols=101 Identities=14% Similarity=0.172 Sum_probs=68.6
Q ss_pred CCEEEEEECCCcEEEEcC-CCceeEEEecCC--C--------cEE-EEEEcCCCeEEEEeCCCcEEEEc--CCceeEEEe
Q 008510 3 GVGIISASHDCTIRLWAL-TGQVLMEMVGHT--A--------IVY-SIDSHASGLIVSGSEDRFAKIWK--DGVCVQSIE 68 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~--~--------~V~-~v~~~p~g~l~s~s~D~tvriWd--~~~~~~~l~ 68 (563)
++.++.++.+|.+.-+|. +|+.+.+..-.. . .+. .+.+. ++.++.++.++.+..+| +|+.+....
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~v~v~~~~g~l~ald~~tG~~~W~~~ 147 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVA-GGKVYIGSEKGQVYALNAEDGEVAWQTK 147 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEE-CCEEEEEcCCCEEEEEECCCCCCccccc
Confidence 567777888899999998 898887754322 0 111 11221 34667788899999999 888887776
Q ss_pred cCCcEEEEEEccCCcEEEEeCCCcEEEEEcCCCcee
Q 008510 69 HPGCVWDAKFLENGDIVTACSDGVTRIWTVHSDKVA 104 (563)
Q Consensus 69 h~~~V~~v~~~p~g~i~sgs~Dg~Irvwd~~~~~~~ 104 (563)
.++.+.+--...++.++.++.++.+.-+|..+++..
T Consensus 148 ~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~ 183 (394)
T PRK11138 148 VAGEALSRPVVSDGLVLVHTSNGMLQALNESDGAVK 183 (394)
T ss_pred CCCceecCCEEECCEEEEECCCCEEEEEEccCCCEe
Confidence 444443321222556777888999999999998854
No 307
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=95.76 E-value=0.25 Score=51.25 Aligned_cols=88 Identities=14% Similarity=0.034 Sum_probs=54.9
Q ss_pred cEEEEcCCCceeEEEecCCCcEEEEEEcCCC-e--EEEEeCCCcEEEEc-CCceeEEEecCCcEEEEEEccCCc-EEEEe
Q 008510 14 TIRLWALTGQVLMEMVGHTAIVYSIDSHASG-L--IVSGSEDRFAKIWK-DGVCVQSIEHPGCVWDAKFLENGD-IVTAC 88 (563)
Q Consensus 14 tIrlWd~~g~~i~~l~gH~~~V~~v~~~p~g-~--l~s~s~D~tvriWd-~~~~~~~l~h~~~V~~v~~~p~g~-i~sgs 88 (563)
++.|++++++-+....+-.+.|.+.+|.|.+ . +++|-.+-++.++| .++....+ .+..=..+-|+|.++ ++.++
T Consensus 256 nLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl~~~~-Pe~~rNT~~fsp~~r~il~ag 334 (561)
T COG5354 256 NLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNLRFYF-PEQKRNTIFFSPHERYILFAG 334 (561)
T ss_pred eEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeecccccceEEec-CCcccccccccCcccEEEEec
Confidence 4556666444444444557788888888876 3 44455777888888 66643333 333445567888887 66655
Q ss_pred CC---CcEEEEEcCCCc
Q 008510 89 SD---GVTRIWTVHSDK 102 (563)
Q Consensus 89 ~D---g~Irvwd~~~~~ 102 (563)
-| |.|-+||.....
T Consensus 335 F~nl~gni~i~~~~~rf 351 (561)
T COG5354 335 FDNLQGNIEIFDPAGRF 351 (561)
T ss_pred CCccccceEEeccCCce
Confidence 54 567777766543
No 308
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.61 E-value=0.049 Score=57.79 Aligned_cols=74 Identities=16% Similarity=0.126 Sum_probs=64.4
Q ss_pred CCcEEEEEEcCCC-eEEEEeCCCcEEEEc-CCceeEEEe-cCCcEE-EEEEccCCc-EEEEeCCCcEEEEEcCCCceec
Q 008510 32 TAIVYSIDSHASG-LIVSGSEDRFAKIWK-DGVCVQSIE-HPGCVW-DAKFLENGD-IVTACSDGVTRIWTVHSDKVAD 105 (563)
Q Consensus 32 ~~~V~~v~~~p~g-~l~s~s~D~tvriWd-~~~~~~~l~-h~~~V~-~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~ 105 (563)
...|.-+.|+|.- .+|.+.++|.|-+.+ ..+.+.++. |...+. +++|.|||+ |+.|=.||+|++.|..++....
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLNWQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEeccceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 3557889999987 899999999999999 888889998 555677 999999999 8999999999999999887443
No 309
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=95.55 E-value=0.071 Score=56.37 Aligned_cols=56 Identities=23% Similarity=0.243 Sum_probs=44.9
Q ss_pred CCEEEEEECCCcEEEEcCCCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc
Q 008510 3 GVGIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK 59 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd 59 (563)
.+.++.|+.||+|++||...+.. ++..+.-....++|+|+| .++.|++-|.+.+||
T Consensus 271 E~kLvlGC~DgSiiLyD~~~~~t-~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD 327 (545)
T PF11768_consen 271 EDKLVLGCEDGSIILYDTTRGVT-LLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFD 327 (545)
T ss_pred cceEEEEecCCeEEEEEcCCCee-eeeeecccceEEEEcCCCcEEEEEcCCceEEEEE
Confidence 56899999999999999843322 233344456889999999 999999999999999
No 310
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=95.52 E-value=3.6 Score=48.04 Aligned_cols=54 Identities=7% Similarity=-0.012 Sum_probs=39.4
Q ss_pred CCEEEEEECCCcEEEE----cCCC---ceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc
Q 008510 3 GVGIISASHDCTIRLW----ALTG---QVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK 59 (563)
Q Consensus 3 g~~l~s~s~DgtIrlW----d~~g---~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd 59 (563)
...++.+..+|.|-+. +... +++..+ .+.|.+++|+||+ .++....++++.+.+
T Consensus 87 ~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~v---d~GI~a~~WSPD~Ella~vT~~~~l~~mt 148 (928)
T PF04762_consen 87 SESLCIALASGDIILVREDPDPDEDEIEIVGSV---DSGILAASWSPDEELLALVTGEGNLLLMT 148 (928)
T ss_pred CCcEEEEECCceEEEEEccCCCCCceeEEEEEE---cCcEEEEEECCCcCEEEEEeCCCEEEEEe
Confidence 4557778888999998 5522 334433 5679999999999 777777788887765
No 311
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=95.41 E-value=0.37 Score=53.51 Aligned_cols=99 Identities=11% Similarity=0.114 Sum_probs=70.2
Q ss_pred CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEEE
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDA 76 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~v 76 (563)
+++.++-|+.-..+-..|+ +++..+...-..+.|.=++. ++ .+.+|..-|+|.+-| +-+.++++. |.+.|..+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf 223 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF 223 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeee
Confidence 3456677777777778888 45554544433434555543 34 788899999999999 788899998 99999987
Q ss_pred EEccCCc-EEEEeC---------CCcEEEEEcCCCcee
Q 008510 77 KFLENGD-IVTACS---------DGVTRIWTVHSDKVA 104 (563)
Q Consensus 77 ~~~p~g~-i~sgs~---------Dg~Irvwd~~~~~~~ 104 (563)
... |+ ++++|. |.-|+|||+|.-+..
T Consensus 224 Dv~--GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral 259 (1118)
T KOG1275|consen 224 DVQ--GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRAL 259 (1118)
T ss_pred ecc--CCeEEEeecccccccccccchhhhhhhhhhhcc
Confidence 764 55 666654 455788888877743
No 312
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=95.24 E-value=3.1 Score=40.50 Aligned_cols=90 Identities=13% Similarity=0.091 Sum_probs=59.1
Q ss_pred CCCEEEEEECCCcEEEEcCCCceeEEEecCC-------CcEEEEEEcC-----C-C-eEEEEeCCCcEEEEc-------C
Q 008510 2 PGVGIISASHDCTIRLWALTGQVLMEMVGHT-------AIVYSIDSHA-----S-G-LIVSGSEDRFAKIWK-------D 60 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~~g~~i~~l~gH~-------~~V~~v~~~p-----~-g-~l~s~s~D~tvriWd-------~ 60 (563)
|+..||.+...|+|+++|+.|..+..+..-. ..|..+.|.+ + . .+..-.-+|.++-+- .
T Consensus 54 D~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~ 133 (282)
T PF15492_consen 54 DCTLLAYAESTGTIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQG 133 (282)
T ss_pred CCcEEEEEcCCCeEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCc
Confidence 5788999999999999999776655554322 3455666643 1 2 455556666665544 2
Q ss_pred CceeEEEe----cCCcEEEEEEccCCc--EEEEeCCC
Q 008510 61 GVCVQSIE----HPGCVWDAKFLENGD--IVTACSDG 91 (563)
Q Consensus 61 ~~~~~~l~----h~~~V~~v~~~p~g~--i~sgs~Dg 91 (563)
.+..+++. ++..|.++.++|..+ ++.|+...
T Consensus 134 y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~ 170 (282)
T PF15492_consen 134 YQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN 170 (282)
T ss_pred ceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC
Confidence 23344544 577999999999988 45555544
No 313
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=95.20 E-value=1.5 Score=43.61 Aligned_cols=157 Identities=15% Similarity=0.146 Sum_probs=94.7
Q ss_pred CCCEEEEEEC-----CCcEEEEcCC--CceeEEEecCCCcEEEEEEcCCC-eEEEE--eC-----CCcEEE---------
Q 008510 2 PGVGIISASH-----DCTIRLWALT--GQVLMEMVGHTAIVYSIDSHASG-LIVSG--SE-----DRFAKI--------- 57 (563)
Q Consensus 2 ~g~~l~s~s~-----DgtIrlWd~~--g~~i~~l~gH~~~V~~v~~~p~g-~l~s~--s~-----D~tvri--------- 57 (563)
||++|++.=+ .|.|-|||.. -+.+.++..|.=.-..+.+.||| .|+.+ |- .|..++
T Consensus 61 dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL 140 (305)
T PF07433_consen 61 DGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSL 140 (305)
T ss_pred CCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCce
Confidence 6788877655 4789999994 56788888777666788899998 55543 21 123333
Q ss_pred --Ec--CCceeEEEe-----cCCcEEEEEEccCCcEEEEeCCCcEEEEEcCCCceeceeeecccccccceeEEeeccCCc
Q 008510 58 --WK--DGVCVQSIE-----HPGCVWDAKFLENGDIVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLCRKKVGG 128 (563)
Q Consensus 58 --Wd--~~~~~~~l~-----h~~~V~~v~~~p~g~i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 128 (563)
-| +|+.+.... |.-+++.+++.++|.++.|.... -......+ ....-..++.
T Consensus 141 ~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~q------g~~~~~~P-------------Lva~~~~g~~ 201 (305)
T PF07433_consen 141 VYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQ------GDPGDAPP-------------LVALHRRGGA 201 (305)
T ss_pred EEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecC------CCCCccCC-------------eEEEEcCCCc
Confidence 33 566665532 55689999999999977776431 11111000 0000111112
Q ss_pred eEEEeCCCCc-------eeeecccCCCeEEEEecCCCeEEEEEecccceEEEeCcE
Q 008510 129 LKLEDLPGLE-------ALQIPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEV 177 (563)
Q Consensus 129 i~~~d~~~~~-------~l~~~g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v 177 (563)
+.....+... .-.+..+.+|....+.++.++.+.+||..++.|...-.+
T Consensus 202 ~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l 257 (305)
T PF07433_consen 202 LRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPL 257 (305)
T ss_pred ceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecccc
Confidence 2333332211 112235668888888888888999999999988765433
No 314
>PRK04043 tolB translocation protein TolB; Provisional
Probab=95.03 E-value=2.1 Score=45.22 Aligned_cols=88 Identities=10% Similarity=0.005 Sum_probs=54.7
Q ss_pred cEEEEcCCCceeEEEecCCCcEEEEEEcCCC-e-EEEEeCC---CcEEEEc--CCceeEEEecCCcEEEEEEccCCc-EE
Q 008510 14 TIRLWALTGQVLMEMVGHTAIVYSIDSHASG-L-IVSGSED---RFAKIWK--DGVCVQSIEHPGCVWDAKFLENGD-IV 85 (563)
Q Consensus 14 tIrlWd~~g~~i~~l~gH~~~V~~v~~~p~g-~-l~s~s~D---~tvriWd--~~~~~~~l~h~~~V~~v~~~p~g~-i~ 85 (563)
.|.+-|.+|...+.+.... .+..-.|+|+| . ++..+.+ ..|.++| +++..+....++.+....|+|||+ ++
T Consensus 170 ~l~~~d~dg~~~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la 248 (419)
T PRK04043 170 NIVLADYTLTYQKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLL 248 (419)
T ss_pred eEEEECCCCCceeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEE
Confidence 4444455676555554443 77889999998 4 5544433 3477777 444333333566677888999998 54
Q ss_pred -EEeCC--CcEEEEEcCCCc
Q 008510 86 -TACSD--GVTRIWTVHSDK 102 (563)
Q Consensus 86 -sgs~D--g~Irvwd~~~~~ 102 (563)
+.+.+ ..|.++|+.++.
T Consensus 249 ~~~~~~g~~~Iy~~dl~~g~ 268 (419)
T PRK04043 249 LTMAPKGQPDIYLYDTNTKT 268 (419)
T ss_pred EEEccCCCcEEEEEECCCCc
Confidence 33333 457777776664
No 315
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=94.97 E-value=0.062 Score=58.75 Aligned_cols=88 Identities=16% Similarity=0.290 Sum_probs=69.3
Q ss_pred CCcEEEEcCCCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc-CCceeEEEe--cCCcEEEEEEccCCc-EEE
Q 008510 12 DCTIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-DGVCVQSIE--HPGCVWDAKFLENGD-IVT 86 (563)
Q Consensus 12 DgtIrlWd~~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd-~~~~~~~l~--h~~~V~~v~~~p~g~-i~s 86 (563)
.|+|.||--+|++-+... ..-.+.++||+|.. .++.|-+-|.+.+|. ..+..++.. |+..+.-+.|+++|. +++
T Consensus 40 ~GSVtIfadtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t 118 (1416)
T KOG3617|consen 40 GGSVTIFADTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMT 118 (1416)
T ss_pred CceEEEEecCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEE
Confidence 577888766666543221 11225679999998 888999999999999 666667765 999999999999999 899
Q ss_pred EeCCCcEEEEEcCC
Q 008510 87 ACSDGVTRIWTVHS 100 (563)
Q Consensus 87 gs~Dg~Irvwd~~~ 100 (563)
+..=|.|.+|..+.
T Consensus 119 ~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 119 LDNPGSVHLWRYDV 132 (1416)
T ss_pred cCCCceeEEEEeee
Confidence 99999999998763
No 316
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=94.87 E-value=0.1 Score=56.14 Aligned_cols=99 Identities=16% Similarity=0.175 Sum_probs=71.8
Q ss_pred CCCEEEEEECCCcEEEEcC-CCcee-EEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--C-C--ceeE--EEe--c
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVL-MEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--D-G--VCVQ--SIE--H 69 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i-~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~-~--~~~~--~l~--h 69 (563)
.+++++-|+.-|.+.+|+- .|+.. .+..|-.+.+...+++++. .+|.|+..|.|-++. . . ..++ ... |
T Consensus 44 t~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~ 123 (726)
T KOG3621|consen 44 TEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSH 123 (726)
T ss_pred CCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccC
Confidence 4688999999999999998 44432 2333444555666777777 677777777888777 2 1 1111 111 6
Q ss_pred CCcEEEEEEccCCc-EEEEeCCCcEEEEEcCC
Q 008510 70 PGCVWDAKFLENGD-IVTACSDGVTRIWTVHS 100 (563)
Q Consensus 70 ~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~ 100 (563)
+..|+|++|++||. +.+|.+-|+|..--+++
T Consensus 124 ~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 124 KCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred CceEEEEEecccccEEeecCCCceEEEEEech
Confidence 78999999999998 99999999998877776
No 317
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=94.84 E-value=0.17 Score=55.02 Aligned_cols=101 Identities=15% Similarity=0.183 Sum_probs=76.9
Q ss_pred CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCC-----------C--eEEEEeCCCcEEEEc--CCceeE
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHAS-----------G--LIVSGSEDRFAKIWK--DGVCVQ 65 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~-----------g--~l~s~s~D~tvriWd--~~~~~~ 65 (563)
++..||-||. ..|.+-|. +-+.+..+.-|...|..|.|.|. . .++++...|.|.+|| .+..+.
T Consensus 25 ~~GLiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~ 103 (1062)
T KOG1912|consen 25 PSGLIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVIN 103 (1062)
T ss_pred ccceEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhh
Confidence 3556777764 46788887 88999999999999999999762 1 466666779999999 556566
Q ss_pred EEec-CCcEEEEEEcc---CCc--EEEEeCCCcEEEEEcCCCce
Q 008510 66 SIEH-PGCVWDAKFLE---NGD--IVTACSDGVTRIWTVHSDKV 103 (563)
Q Consensus 66 ~l~h-~~~V~~v~~~p---~g~--i~sgs~Dg~Irvwd~~~~~~ 103 (563)
.+.| ..++..++|-+ +.+ ++.-..-+++.+|+..+|..
T Consensus 104 ~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k 147 (1062)
T KOG1912|consen 104 WLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEK 147 (1062)
T ss_pred hhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCce
Confidence 6774 45899999987 343 55556678999999998873
No 318
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.68 E-value=0.28 Score=56.04 Aligned_cols=109 Identities=17% Similarity=0.181 Sum_probs=69.8
Q ss_pred CCCEEEEE----ECC-CcEEEEcCCCceeEEEecCCCcEEEEEEcCCC-eEEEE---eCCCcEEEEc-CCceeEEEe---
Q 008510 2 PGVGIISA----SHD-CTIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVSG---SEDRFAKIWK-DGVCVQSIE--- 68 (563)
Q Consensus 2 ~g~~l~s~----s~D-gtIrlWd~~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~---s~D~tvriWd-~~~~~~~l~--- 68 (563)
||++|++. ..| ..||+||-+|..-.+-....+-=.+++|-|.| .+++- +.|..|.++. +|-.-..+.
T Consensus 206 Dg~~fAVs~~~~~~~~RkirV~drEg~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~ 285 (1265)
T KOG1920|consen 206 DGEYFAVSFVESETGTRKIRVYDREGALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPF 285 (1265)
T ss_pred CCcEEEEEEEeccCCceeEEEecccchhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCC
Confidence 57777772 234 79999998765433322223333589999998 66664 3455788888 554333332
Q ss_pred -cCC-cEEEEEEccCCc-EEE--EeCCC-cEEEEEcCCCceeceeeec
Q 008510 69 -HPG-CVWDAKFLENGD-IVT--ACSDG-VTRIWTVHSDKVADSLELE 110 (563)
Q Consensus 69 -h~~-~V~~v~~~p~g~-i~s--gs~Dg-~Irvwd~~~~~~~~~~~~~ 110 (563)
... .|..++|+.+++ +++ .+..+ .|++|......+.....+.
T Consensus 286 p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~ 333 (1265)
T KOG1920|consen 286 PLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQ 333 (1265)
T ss_pred cccccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEe
Confidence 222 499999999999 443 24444 4999999988766544443
No 319
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=94.52 E-value=4.9 Score=38.86 Aligned_cols=98 Identities=17% Similarity=0.132 Sum_probs=62.3
Q ss_pred CCEEEEEECCCcEEEEcC-CCceeEEEec-----CCCcEEEEEEcCCC-eEEEEeCC--------CcEEEEc-CCceeEE
Q 008510 3 GVGIISASHDCTIRLWAL-TGQVLMEMVG-----HTAIVYSIDSHASG-LIVSGSED--------RFAKIWK-DGVCVQS 66 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~-~g~~i~~l~g-----H~~~V~~v~~~p~g-~l~s~s~D--------~tvriWd-~~~~~~~ 66 (563)
+..++.|..++ +.++|. +++....... .....+++++.|+| ..++.... +.|..++ .++....
T Consensus 51 ~g~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~~~~~~~ 129 (246)
T PF08450_consen 51 DGRLYVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPDGKVTVV 129 (246)
T ss_dssp TSEEEEEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETTSEEEEE
T ss_pred CCEEEEEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCCCeEEEE
Confidence 45666676655 566688 6644332222 33567899999999 66665544 3355555 5443333
Q ss_pred EecCCcEEEEEEccCCc-E-EEEeCCCcEEEEEcCCC
Q 008510 67 IEHPGCVWDAKFLENGD-I-VTACSDGVTRIWTVHSD 101 (563)
Q Consensus 67 l~h~~~V~~v~~~p~g~-i-~sgs~Dg~Irvwd~~~~ 101 (563)
...-.....++|+|+|+ + ++-+..+.|..|++...
T Consensus 130 ~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~ 166 (246)
T PF08450_consen 130 ADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDAD 166 (246)
T ss_dssp EEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETT
T ss_pred ecCcccccceEECCcchheeecccccceeEEEecccc
Confidence 33444678999999998 4 56677888999998643
No 320
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=94.40 E-value=6.2 Score=39.60 Aligned_cols=100 Identities=15% Similarity=0.273 Sum_probs=62.9
Q ss_pred CCEEEEEEC---CCcEEEEcC---CCce--eEEEecCCCcEEEEEEcCCC-eEEEEeC-CCcEEEEc---CCc---eeEE
Q 008510 3 GVGIISASH---DCTIRLWAL---TGQV--LMEMVGHTAIVYSIDSHASG-LIVSGSE-DRFAKIWK---DGV---CVQS 66 (563)
Q Consensus 3 g~~l~s~s~---DgtIrlWd~---~g~~--i~~l~gH~~~V~~v~~~p~g-~l~s~s~-D~tvriWd---~~~---~~~~ 66 (563)
+++|.++-. +|.|--|.+ +|+. +.........-+.|+++++| .++++.- -+.|.++- .|. .++.
T Consensus 51 ~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~ 130 (346)
T COG2706 51 QRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQV 130 (346)
T ss_pred CCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceee
Confidence 445666544 467777766 2543 22211122233678999999 6555544 47888887 343 3455
Q ss_pred EecCCc----------EEEEEEccCCc-EEEEeC-CCcEEEEEcCCCc
Q 008510 67 IEHPGC----------VWDAKFLENGD-IVTACS-DGVTRIWTVHSDK 102 (563)
Q Consensus 67 l~h~~~----------V~~v~~~p~g~-i~sgs~-Dg~Irvwd~~~~~ 102 (563)
+.|.+. +.+..+.|+|+ +++... -..|.+|++..++
T Consensus 131 ~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~ 178 (346)
T COG2706 131 VKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGK 178 (346)
T ss_pred eecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCc
Confidence 667766 99999999998 443322 3478999998776
No 321
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=94.32 E-value=0.12 Score=48.38 Aligned_cols=93 Identities=11% Similarity=0.122 Sum_probs=53.6
Q ss_pred CCEEEEEECCCcEEEEcCC--CceeEEEecCCCcEEEE-EEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEE
Q 008510 3 GVGIISASHDCTIRLWALT--GQVLMEMVGHTAIVYSI-DSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWD 75 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~~--g~~i~~l~gH~~~V~~v-~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~ 75 (563)
+..++.|+.||.|.+|.+. |.....+..-...|-+. ....++ ...+++.|+.+|-|+ -.+.+.... |..
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~---- 145 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNF---- 145 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccC----
Confidence 3568889999999999983 43322222222333332 222234 778899999999999 444443333 542
Q ss_pred EEEccCCcEEEEeCCCcEEEEEcCCCc
Q 008510 76 AKFLENGDIVTACSDGVTRIWTVHSDK 102 (563)
Q Consensus 76 v~~~p~g~i~sgs~Dg~Irvwd~~~~~ 102 (563)
.|...+++.++|+.|.+|++...+
T Consensus 146 ---~~~e~~ivv~sd~~i~~a~~S~d~ 169 (238)
T KOG2444|consen 146 ---ESGEELIVVGSDEFLKIADTSHDR 169 (238)
T ss_pred ---CCcceeEEecCCceEEeeccccch
Confidence 222225555556666666665554
No 322
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=94.06 E-value=0.47 Score=53.38 Aligned_cols=96 Identities=10% Similarity=0.102 Sum_probs=66.1
Q ss_pred CCEEEEEECCCcEEEEcC--CCceeEEEec----CCCcEEEEEEcCCCeEEEEeCCCcEEEEc-CC-ceeEEEe-cCCcE
Q 008510 3 GVGIISASHDCTIRLWAL--TGQVLMEMVG----HTAIVYSIDSHASGLIVSGSEDRFAKIWK-DG-VCVQSIE-HPGCV 73 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~--~g~~i~~l~g----H~~~V~~v~~~p~g~l~s~s~D~tvriWd-~~-~~~~~l~-h~~~V 73 (563)
...-+.|=++..+..||. .|..+..-.+ ......|++-..+|.+|.||.+|-||++| .+ +....|. ...+|
T Consensus 542 ~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI 621 (794)
T PF08553_consen 542 NEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPI 621 (794)
T ss_pred CCceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCceEEEEeCCCcEEeecccchhhhhcCCCCCCCe
Confidence 334566778889999998 5533222122 22345788888888999999999999999 44 3333344 45699
Q ss_pred EEEEEccCCcEEEEeCCCcEEEEEc
Q 008510 74 WDAKFLENGDIVTACSDGVTRIWTV 98 (563)
Q Consensus 74 ~~v~~~p~g~i~sgs~Dg~Irvwd~ 98 (563)
..|..+.||+.+.+.-+..+-+++.
T Consensus 622 ~~iDvt~DGkwilaTc~tyLlLi~t 646 (794)
T PF08553_consen 622 IGIDVTADGKWILATCKTYLLLIDT 646 (794)
T ss_pred eEEEecCCCcEEEEeecceEEEEEE
Confidence 9999999999333333566777765
No 323
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=94.03 E-value=1.9 Score=44.99 Aligned_cols=93 Identities=8% Similarity=0.106 Sum_probs=56.4
Q ss_pred EECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eE-EEE--e--------CCCcEEEEc-CCceeEEE-ecCCcE
Q 008510 9 ASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LI-VSG--S--------EDRFAKIWK-DGVCVQSI-EHPGCV 73 (563)
Q Consensus 9 ~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l-~s~--s--------~D~tvriWd-~~~~~~~l-~h~~~V 73 (563)
.+.++++++|.+ .+..+.+-.-....=..+.|.+.| .+ +-. . ...++.|.+ ++..+... ...+.|
T Consensus 198 ~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pV 277 (561)
T COG5354 198 LNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLKDPV 277 (561)
T ss_pred CCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceeccccccc
Confidence 345777888887 444443321111112356677776 21 111 0 123456666 54444444 357799
Q ss_pred EEEEEccCCc---EEEEeCCCcEEEEEcCCC
Q 008510 74 WDAKFLENGD---IVTACSDGVTRIWTVHSD 101 (563)
Q Consensus 74 ~~v~~~p~g~---i~sgs~Dg~Irvwd~~~~ 101 (563)
...+|.|.++ +++|-.+..+-+||++..
T Consensus 278 hdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N 308 (561)
T COG5354 278 HDFTWEPLSSRFAVISGYMPASVSVFDLRGN 308 (561)
T ss_pred eeeeecccCCceeEEecccccceeecccccc
Confidence 9999999887 566678899999999876
No 324
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.67 E-value=0.21 Score=56.28 Aligned_cols=93 Identities=19% Similarity=0.308 Sum_probs=65.6
Q ss_pred CEEEEEECCCcEEEEcCCCcee--EEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCC---cEE
Q 008510 4 VGIISASHDCTIRLWALTGQVL--MEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPG---CVW 74 (563)
Q Consensus 4 ~~l~s~s~DgtIrlWd~~g~~i--~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~---~V~ 74 (563)
..++.|+..|.|-..|++|..- ..=..-+++|.+++|+.+| .+..|-.+|-|.+|| .++.++.+. |.. .|-
T Consensus 100 ~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi 179 (1206)
T KOG2079|consen 100 VPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVI 179 (1206)
T ss_pred eeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEE
Confidence 3577888888898888866422 1112235789999999999 888899999999999 668888887 433 444
Q ss_pred EEEEccCCc-EEEEeCCCcEEEEEc
Q 008510 75 DAKFLENGD-IVTACSDGVTRIWTV 98 (563)
Q Consensus 75 ~v~~~p~g~-i~sgs~Dg~Irvwd~ 98 (563)
.+.+..++. +.++...|. +|.+
T Consensus 180 ~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 180 FVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred EEEEeCCCcEEEEccCCCc--eEEE
Confidence 444544444 777766675 5543
No 325
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=93.57 E-value=0.2 Score=53.36 Aligned_cols=76 Identities=16% Similarity=0.059 Sum_probs=60.2
Q ss_pred CEEEEEECCCcEEEEcCCCceeEEEecCCCcEE-EEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe--cCCcEEEEE
Q 008510 4 VGIISASHDCTIRLWALTGQVLMEMVGHTAIVY-SIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE--HPGCVWDAK 77 (563)
Q Consensus 4 ~~l~s~s~DgtIrlWd~~g~~i~~l~gH~~~V~-~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~--h~~~V~~v~ 77 (563)
+.||.+-.+|.|-+..++-+.+.++.-|...+. +++|.||| .++.|-.||+|++-| .+..++... ....|.++-
T Consensus 33 dLiA~~t~~gelli~R~n~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~~~~s~e~~is~~~ 112 (665)
T KOG4640|consen 33 DLIATRTEKGELLIHRLNWQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVSFLFSVETDISKGI 112 (665)
T ss_pred chhheeccCCcEEEEEeccceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceeccccccccchheee
Confidence 357778888888888887777788877777777 99999999 899999999999999 677666632 444677777
Q ss_pred Ec
Q 008510 78 FL 79 (563)
Q Consensus 78 ~~ 79 (563)
|.
T Consensus 113 w~ 114 (665)
T KOG4640|consen 113 WD 114 (665)
T ss_pred cc
Confidence 75
No 326
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=93.49 E-value=1.5 Score=49.42 Aligned_cols=93 Identities=19% Similarity=0.176 Sum_probs=67.1
Q ss_pred EEEECCCcEEEEcC-CCceeEEEecCCCc-EEEEEEcC-----CC-eEEEEeCCCcEEEEc---CC-ceeEEE----ecC
Q 008510 7 ISASHDCTIRLWAL-TGQVLMEMVGHTAI-VYSIDSHA-----SG-LIVSGSEDRFAKIWK---DG-VCVQSI----EHP 70 (563)
Q Consensus 7 ~s~s~DgtIrlWd~-~g~~i~~l~gH~~~-V~~v~~~p-----~g-~l~s~s~D~tvriWd---~~-~~~~~l----~h~ 70 (563)
....+...|.-.|+ .|+.+.++.-|... |.+++-.. .. .-+.|-.+..+.-|| .+ ++++.- ...
T Consensus 498 ~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~ 577 (794)
T PF08553_consen 498 LDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSK 577 (794)
T ss_pred ecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccC
Confidence 33345677888888 89999999988754 66654321 12 456677788899999 33 333321 234
Q ss_pred CcEEEEEEccCCcEEEEeCCCcEEEEEcC
Q 008510 71 GCVWDAKFLENGDIVTACSDGVTRIWTVH 99 (563)
Q Consensus 71 ~~V~~v~~~p~g~i~sgs~Dg~Irvwd~~ 99 (563)
....|++-..+|.||.|+.+|.||+||.-
T Consensus 578 ~~Fs~~aTt~~G~iavgs~~G~IRLyd~~ 606 (794)
T PF08553_consen 578 NNFSCFATTEDGYIAVGSNKGDIRLYDRL 606 (794)
T ss_pred CCceEEEecCCceEEEEeCCCcEEeeccc
Confidence 47899999999999999999999999943
No 327
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=93.16 E-value=0.27 Score=34.25 Aligned_cols=31 Identities=19% Similarity=0.256 Sum_probs=26.0
Q ss_pred cCCcEEEEEEccCCc-EEEEeCCCcEEEEEcC
Q 008510 69 HPGCVWDAKFLENGD-IVTACSDGVTRIWTVH 99 (563)
Q Consensus 69 h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~ 99 (563)
.+..|.+++|+|+.+ ||.|..||.|.+|.++
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 345788999999988 8899999999998883
No 328
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=92.79 E-value=0.098 Score=57.56 Aligned_cols=100 Identities=15% Similarity=0.218 Sum_probs=75.5
Q ss_pred CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC--eEEEEeCCC-cEEEEc---CCceeEEEecCCcEE
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG--LIVSGSEDR-FAKIWK---DGVCVQSIEHPGCVW 74 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g--~l~s~s~D~-tvriWd---~~~~~~~l~h~~~V~ 74 (563)
+.++++.|+..|.|+++++ +|.....+.+|.+.|+-+--+-+| .+.+++..+ -.-+|+ .+...+++. .-.
T Consensus 1112 ~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~---ed~ 1188 (1516)
T KOG1832|consen 1112 GTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGPRHSFD---EDK 1188 (1516)
T ss_pred CCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhccccccCcccccc---ccc
Confidence 3578999999999999999 899999999999999999888888 555555555 477999 344444443 556
Q ss_pred EEEEccCCc-EEEEeCCCcEEEEEcCCCcee
Q 008510 75 DAKFLENGD-IVTACSDGVTRIWTVHSDKVA 104 (563)
Q Consensus 75 ~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~ 104 (563)
+|.|+..-. -+.|+......+||+.++...
T Consensus 1189 ~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l 1219 (1516)
T KOG1832|consen 1189 AVKFSNSLQFRALGTEADDALLYDVQTCSPL 1219 (1516)
T ss_pred eeehhhhHHHHHhcccccceEEEecccCcHH
Confidence 788876544 344555567899999988643
No 329
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=92.55 E-value=0.45 Score=48.77 Aligned_cols=73 Identities=18% Similarity=0.287 Sum_probs=56.9
Q ss_pred cCCCcEEEEEEcCCCeEEEEeCCCcEEEEc-CC-ceeEEEe----cCCcEEEEEEccCCc-EEEEeC-CCcEEEEEcCCC
Q 008510 30 GHTAIVYSIDSHASGLIVSGSEDRFAKIWK-DG-VCVQSIE----HPGCVWDAKFLENGD-IVTACS-DGVTRIWTVHSD 101 (563)
Q Consensus 30 gH~~~V~~v~~~p~g~l~s~s~D~tvriWd-~~-~~~~~l~----h~~~V~~v~~~p~g~-i~sgs~-Dg~Irvwd~~~~ 101 (563)
-|.+.|+.|...-...+.+++-||.++.|- ++ .-+.-+. |-+.|.+++.+.+|. +.|++. |..+|+||+.+-
T Consensus 7 mhrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 7 MHRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred cccceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence 488888887665444899999999999999 54 3222222 666888899999998 788788 999999999875
Q ss_pred c
Q 008510 102 K 102 (563)
Q Consensus 102 ~ 102 (563)
.
T Consensus 87 D 87 (558)
T KOG0882|consen 87 D 87 (558)
T ss_pred c
Confidence 4
No 330
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=92.45 E-value=8.2 Score=37.26 Aligned_cols=99 Identities=16% Similarity=0.146 Sum_probs=61.5
Q ss_pred CCCEEEEEECC--------CcEEEEcCCCceeEEEecCCCcEEEEEEcCCC-e-EEEEeCCCcEEEEc---CCce---eE
Q 008510 2 PGVGIISASHD--------CTIRLWALTGQVLMEMVGHTAIVYSIDSHASG-L-IVSGSEDRFAKIWK---DGVC---VQ 65 (563)
Q Consensus 2 ~g~~l~s~s~D--------gtIrlWd~~g~~i~~l~gH~~~V~~v~~~p~g-~-l~s~s~D~tvriWd---~~~~---~~ 65 (563)
+|++.++.... |.|..++.+++... +...-.....++|+|++ . +++-+..+.|..++ .+.. .+
T Consensus 96 ~G~ly~t~~~~~~~~~~~~g~v~~~~~~~~~~~-~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~ 174 (246)
T PF08450_consen 96 DGNLYVTDSGGGGASGIDPGSVYRIDPDGKVTV-VADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRR 174 (246)
T ss_dssp TS-EEEEEECCBCTTCGGSEEEEEEETTSEEEE-EEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEE
T ss_pred CCCEEEEecCCCccccccccceEEECCCCeEEE-EecCcccccceEECCcchheeecccccceeEEEeccccccceeeee
Confidence 46666665544 33555555644433 33345667899999998 4 45667777777777 2331 12
Q ss_pred EEe-cC---CcEEEEEEccCCcE-EEEeCCCcEEEEEcCCCc
Q 008510 66 SIE-HP---GCVWDAKFLENGDI-VTACSDGVTRIWTVHSDK 102 (563)
Q Consensus 66 ~l~-h~---~~V~~v~~~p~g~i-~sgs~Dg~Irvwd~~~~~ 102 (563)
.+. .+ +..-.+++..+|+| ++.-..+.|.++|.+ ++
T Consensus 175 ~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~ 215 (246)
T PF08450_consen 175 VFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GK 215 (246)
T ss_dssp EEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SC
T ss_pred eEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-cc
Confidence 232 11 24788999999995 454568899999988 65
No 331
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=91.85 E-value=15 Score=36.88 Aligned_cols=99 Identities=17% Similarity=0.237 Sum_probs=67.2
Q ss_pred CCCEEEEEEC-CCcEEEEcC--CCceeE--EEecCCCc----------EEEEEEcCCC-eEEEE--eCCCcEEEEc--CC
Q 008510 2 PGVGIISASH-DCTIRLWAL--TGQVLM--EMVGHTAI----------VYSIDSHASG-LIVSG--SEDRFAKIWK--DG 61 (563)
Q Consensus 2 ~g~~l~s~s~-DgtIrlWd~--~g~~i~--~l~gH~~~----------V~~v~~~p~g-~l~s~--s~D~tvriWd--~~ 61 (563)
+|++++++.. -|.|.++-+ +|.+.. .+..|.+. +.+..+.|++ +++++ |.| .|.+++ +|
T Consensus 99 ~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~D-ri~~y~~~dg 177 (346)
T COG2706 99 DGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTD-RIFLYDLDDG 177 (346)
T ss_pred CCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCc-eEEEEEcccC
Confidence 4667777665 578999988 454322 23346666 8899999999 66554 445 478888 44
Q ss_pred ceeE----EEecCCcEEEEEEccCCcE--EEEeCCCcEEEEEcCCC
Q 008510 62 VCVQ----SIEHPGCVWDAKFLENGDI--VTACSDGVTRIWTVHSD 101 (563)
Q Consensus 62 ~~~~----~l~h~~~V~~v~~~p~g~i--~sgs~Dg~Irvwd~~~~ 101 (563)
.... .+.....-+.+.|+|+|++ +..=.+++|-+|..+..
T Consensus 178 ~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~ 223 (346)
T COG2706 178 KLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPA 223 (346)
T ss_pred ccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCC
Confidence 3221 1123348899999999994 34556899999999874
No 332
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.78 E-value=1.5 Score=46.12 Aligned_cols=93 Identities=13% Similarity=0.126 Sum_probs=64.3
Q ss_pred EEEECCCcEEEEcC--CCc-eeEEEecCC----CcEEEEEEcCCCeEEEEeCCCcEEEEc-CCceeE-EEe-cCCcEEEE
Q 008510 7 ISASHDCTIRLWAL--TGQ-VLMEMVGHT----AIVYSIDSHASGLIVSGSEDRFAKIWK-DGVCVQ-SIE-HPGCVWDA 76 (563)
Q Consensus 7 ~s~s~DgtIrlWd~--~g~-~i~~l~gH~----~~V~~v~~~p~g~l~s~s~D~tvriWd-~~~~~~-~l~-h~~~V~~v 76 (563)
+.|=.|..|.-||. .|. .+..-++|. ....|.+-..+|.+|.||.+|-||+|| .+.... .+. ....|..|
T Consensus 398 lvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hV 477 (644)
T KOG2395|consen 398 LVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHV 477 (644)
T ss_pred EEeecCCceEEecccccCcceeeeeeccccccccccceeeecCCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeE
Confidence 34666888999998 555 444444554 224566666678999999999999999 444333 344 55689999
Q ss_pred EEccCCcEEEEeCCCcEEEEEcC
Q 008510 77 KFLENGDIVTACSDGVTRIWTVH 99 (563)
Q Consensus 77 ~~~p~g~i~sgs~Dg~Irvwd~~ 99 (563)
..+.+|+.+.|.-+..+-+-|+.
T Consensus 478 dvtadGKwil~Tc~tyLlLi~t~ 500 (644)
T KOG2395|consen 478 DVTADGKWILATCKTYLLLIDTL 500 (644)
T ss_pred EeeccCcEEEEecccEEEEEEEe
Confidence 99999994444446666666653
No 333
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.68 E-value=14 Score=41.51 Aligned_cols=98 Identities=16% Similarity=0.260 Sum_probs=67.5
Q ss_pred CEEEEEECCCc-----EEEEcCC---C----cee--EEEecC-----CCcEEEEEEcCCC-eEEEEeCCCcEEEEc----
Q 008510 4 VGIISASHDCT-----IRLWALT---G----QVL--MEMVGH-----TAIVYSIDSHASG-LIVSGSEDRFAKIWK---- 59 (563)
Q Consensus 4 ~~l~s~s~Dgt-----IrlWd~~---g----~~i--~~l~gH-----~~~V~~v~~~p~g-~l~s~s~D~tvriWd---- 59 (563)
.+++|-+.|+. +++|+++ + .|+ ..+.+| +.++.+++++.+- .+|.|=.||.|..+.
T Consensus 78 ~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~ 157 (933)
T KOG2114|consen 78 NFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDIL 157 (933)
T ss_pred eEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcch
Confidence 46777777765 9999981 2 344 122332 4567888888776 788898999999887
Q ss_pred -CCceeEEEecCC--cEEEEEEccCCc-EEEEeCCCcEEEEEcCCCc
Q 008510 60 -DGVCVQSIEHPG--CVWDAKFLENGD-IVTACSDGVTRIWTVHSDK 102 (563)
Q Consensus 60 -~~~~~~~l~h~~--~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~ 102 (563)
+....+.+.|++ +|+.+++..++. ++-...-..|.+|.+. ++
T Consensus 158 RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~-gr 203 (933)
T KOG2114|consen 158 RDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLS-GR 203 (933)
T ss_pred hccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEec-CC
Confidence 222234444554 999999999887 4444556788899887 44
No 334
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=91.61 E-value=0.76 Score=49.74 Aligned_cols=72 Identities=19% Similarity=0.293 Sum_probs=58.2
Q ss_pred CcEEEEEEcCCC-eEEEEeCCCcEEEEc--C----Cc-----------eeEEEe-cCCcEEEEEEccCCc-EEEEeCCCc
Q 008510 33 AIVYSIDSHASG-LIVSGSEDRFAKIWK--D----GV-----------CVQSIE-HPGCVWDAKFLENGD-IVTACSDGV 92 (563)
Q Consensus 33 ~~V~~v~~~p~g-~l~s~s~D~tvriWd--~----~~-----------~~~~l~-h~~~V~~v~~~p~g~-i~sgs~Dg~ 92 (563)
....|+.|+.+. +++.||.||.++|-. + ++ .-|++. |.++|.-+.|+.+.. +-+...+|.
T Consensus 15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~Gl 94 (1189)
T KOG2041|consen 15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGL 94 (1189)
T ss_pred ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCce
Confidence 346799999875 999999999999986 1 11 125566 999999999998776 888888999
Q ss_pred EEEEEcCCCcee
Q 008510 93 TRIWTVHSDKVA 104 (563)
Q Consensus 93 Irvwd~~~~~~~ 104 (563)
|-||-+-.+.+.
T Consensus 95 IiVWmlykgsW~ 106 (1189)
T KOG2041|consen 95 IIVWMLYKGSWC 106 (1189)
T ss_pred EEEEeeecccHH
Confidence 999999888743
No 335
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=91.44 E-value=0.5 Score=32.92 Aligned_cols=33 Identities=18% Similarity=0.205 Sum_probs=28.5
Q ss_pred CCcEEEEEEcCCC-eEEEEeCCCcEEEEc-CCcee
Q 008510 32 TAIVYSIDSHASG-LIVSGSEDRFAKIWK-DGVCV 64 (563)
Q Consensus 32 ~~~V~~v~~~p~g-~l~s~s~D~tvriWd-~~~~~ 64 (563)
...|.+++|+|.. .+|.+..||.|.+++ +++.+
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~qri 45 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLNWQRI 45 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECCCcCc
Confidence 3569999999998 999999999999999 66643
No 336
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=91.22 E-value=2.5 Score=46.46 Aligned_cols=89 Identities=15% Similarity=0.271 Sum_probs=62.2
Q ss_pred ECCCcEEEEcC-CCceeEEEe-cCCCcEEEEEEc--CCC-eEEEEeCCCcEEEEc-----------CCceeEEEe---cC
Q 008510 10 SHDCTIRLWAL-TGQVLMEMV-GHTAIVYSIDSH--ASG-LIVSGSEDRFAKIWK-----------DGVCVQSIE---HP 70 (563)
Q Consensus 10 s~DgtIrlWd~-~g~~i~~l~-gH~~~V~~v~~~--p~g-~l~s~s~D~tvriWd-----------~~~~~~~l~---h~ 70 (563)
+...++.|||. .+....+-. ...+.|.+++|. |+| .+.+.|-.+.|.++. ....++.+. |+
T Consensus 48 ~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T 127 (631)
T PF12234_consen 48 SSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDISSHT 127 (631)
T ss_pred CCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEEeecCC
Confidence 33456899999 454332211 346889999985 567 788889999999996 113445443 44
Q ss_pred -CcEEEEEEccCCcEEEEeCCCcEEEEEcC
Q 008510 71 -GCVWDAKFLENGDIVTACSDGVTRIWTVH 99 (563)
Q Consensus 71 -~~V~~v~~~p~g~i~sgs~Dg~Irvwd~~ 99 (563)
.+|.+..|.++|.++.|+ ++.+.|+|--
T Consensus 128 ~h~Igds~Wl~~G~LvV~s-GNqlfv~dk~ 156 (631)
T PF12234_consen 128 PHPIGDSIWLKDGTLVVGS-GNQLFVFDKW 156 (631)
T ss_pred CCCccceeEecCCeEEEEe-CCEEEEECCC
Confidence 589999999999976665 5678888754
No 337
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.68 E-value=1.6 Score=46.02 Aligned_cols=108 Identities=13% Similarity=0.141 Sum_probs=71.1
Q ss_pred EEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC---eE-----EEEeCCCcEEEEc---CCc-eeEEEe----
Q 008510 6 IISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG---LI-----VSGSEDRFAKIWK---DGV-CVQSIE---- 68 (563)
Q Consensus 6 l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g---~l-----~s~s~D~tvriWd---~~~-~~~~l~---- 68 (563)
+.++.+-..++--|+ .|+.+.+.+-|.. |.-+.+.|++ ++ +.|-.|..|.=|| .+. .+..-+
T Consensus 349 l~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy 427 (644)
T KOG2395|consen 349 LMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQY 427 (644)
T ss_pred eeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccc
Confidence 344444455666677 7999999988877 7777777764 33 2355677888899 343 221111
Q ss_pred -cCCcEEEEEEccCCcEEEEeCCCcEEEEEcCCCceeceeeeccccccc
Q 008510 69 -HPGCVWDAKFLENGDIVTACSDGVTRIWTVHSDKVADSLELEAYASEL 116 (563)
Q Consensus 69 -h~~~V~~v~~~p~g~i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v 116 (563)
......|.+-..+|.||.||.+|.||+||. .++.+. ..++++...+
T Consensus 428 ~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AK-TAlPgLG~~I 474 (644)
T KOG2395|consen 428 STKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAK-TALPGLGDAI 474 (644)
T ss_pred ccccccceeeecCCceEEEeecCCcEEeehh-hhhhhh-hcccccCCce
Confidence 234688888888999999999999999998 444332 2334444433
No 338
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=90.52 E-value=1.3 Score=48.51 Aligned_cols=94 Identities=12% Similarity=0.027 Sum_probs=72.2
Q ss_pred EEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCC---C--eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEE
Q 008510 5 GIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHAS---G--LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWD 75 (563)
Q Consensus 5 ~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~---g--~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~ 75 (563)
++|++.-.|.|-+||. .+..+..+..|...+..++|.+. + .++.-..-.++-+|+ +|+.+.... ......|
T Consensus 81 liAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~ 160 (1062)
T KOG1912|consen 81 LIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSC 160 (1062)
T ss_pred eEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceee
Confidence 5788888899999999 78788888889999999999763 3 466666678999998 788776666 3346777
Q ss_pred EEEcc-CCc-EEEEeCCCcEEEEEc
Q 008510 76 AKFLE-NGD-IVTACSDGVTRIWTV 98 (563)
Q Consensus 76 v~~~p-~g~-i~sgs~Dg~Irvwd~ 98 (563)
+.+.| +.+ +..-++.|.+.+-+.
T Consensus 161 f~~DPfd~rh~~~l~s~g~vl~~~~ 185 (1062)
T KOG1912|consen 161 FRVDPFDSRHFCVLGSKGFVLSCKD 185 (1062)
T ss_pred eeeCCCCcceEEEEccCceEEEEec
Confidence 88888 444 666666777766664
No 339
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=90.34 E-value=0.33 Score=53.66 Aligned_cols=120 Identities=18% Similarity=0.184 Sum_probs=82.1
Q ss_pred CceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEEEEEccCCc-EEEEeC-CC-cEE
Q 008510 22 GQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDAKFLENGD-IVTACS-DG-VTR 94 (563)
Q Consensus 22 g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~v~~~p~g~-i~sgs~-Dg-~Ir 94 (563)
.+.++++..|+...+|++|+-+. .++.|+-.|.|++++ +|....... |...|+.|.-+.+|. .++.+. .. -.-
T Consensus 1091 Fr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred cccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHH
Confidence 35667888999999999999876 899999999999999 777776666 999999999999998 444433 33 467
Q ss_pred EEEcCCC-ceece---eeecccccccceeEEeeccCCceEEEeCCCCceeee
Q 008510 95 IWTVHSD-KVADS---LELEAYASELSQYKLCRKKVGGLKLEDLPGLEALQI 142 (563)
Q Consensus 95 vwd~~~~-~~~~~---~~~~~~~~~v~~~~~~~~~~~~i~~~d~~~~~~l~~ 142 (563)
+|+..+- ...+. ...-.|.+..... +.+.......++|+.+...+..
T Consensus 1171 LW~~~s~~~~~Hsf~ed~~vkFsn~~q~r-~~gt~~d~a~~YDvqT~~~l~t 1221 (1516)
T KOG1832|consen 1171 LWDASSTGGPRHSFDEDKAVKFSNSLQFR-ALGTEADDALLYDVQTCSPLQT 1221 (1516)
T ss_pred HhccccccCccccccccceeehhhhHHHH-HhcccccceEEEecccCcHHHH
Confidence 8988652 11111 1111233332222 2233335788999988877655
No 340
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=90.12 E-value=1.2 Score=37.23 Aligned_cols=98 Identities=15% Similarity=0.013 Sum_probs=63.0
Q ss_pred cchHHHHHHHHHhhcCC-CccHHHHHhhHHHHHHHhhhhccCCChhHHHHHHHHHHHHHhhhhhcCCchhhhHHHHHHHH
Q 008510 419 PANLLTGIRAVTNLFKN-SSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAALE 497 (563)
Q Consensus 419 ~~~~ll~lR~l~N~f~~-~~~~~~~~~~~~~il~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~~~~~~~~l~~~~~~ 497 (563)
+..+--+++++.|+... +.....+.. ..+++.+...+...+..++..++.++.|++.........-....++..+++
T Consensus 21 ~~~~~~a~~~l~~l~~~~~~~~~~~~~--~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~l~~ 98 (120)
T cd00020 21 ENVQREAAWALSNLSAGNNDNIQAVVE--AGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVN 98 (120)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHH--CCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHHHHCCChHHHHH
Confidence 56678899999999988 455554443 244555555555568899999999999997542111111111224566667
Q ss_pred hhhhcccChhHHHHHHHHHhhhh
Q 008510 498 IAEEESIEVDSKYRALVAIGTLM 520 (563)
Q Consensus 498 ~l~~~~~~~Ea~~R~l~AlG~l~ 520 (563)
.+. ..+.+.....+.+|++|.
T Consensus 99 ~l~--~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 99 LLD--SSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHh--cCCHHHHHHHHHHHHHhh
Confidence 774 346777777888887764
No 341
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=89.45 E-value=2.9 Score=40.77 Aligned_cols=110 Identities=19% Similarity=0.215 Sum_probs=72.0
Q ss_pred HHHHHhhcCCCCCcchHHHHHHHHHhhcCCCccHHHHHhhHHHHHHHhhhhccCCChhHHHHHHHHHHHHHhhhhhcCCc
Q 008510 406 MEMIEKVSSNPTLPANLLTGIRAVTNLFKNSSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDE 485 (563)
Q Consensus 406 ~~~l~~~~~~~~~~~~~ll~lR~l~N~f~~~~~~~~~~~~~~~il~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~~~ 485 (563)
..++....+.+.....++-+||+|+||-.......++....+.++. .+.+.+..+|.=+--++.|+|.--...++-
T Consensus 96 ~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~----LL~~G~~~~k~~vLk~L~nLS~np~~~~~L 171 (254)
T PF04826_consen 96 PQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLS----LLSSGSEKTKVQVLKVLVNLSENPDMTREL 171 (254)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHH----HHHcCChHHHHHHHHHHHHhccCHHHHHHH
Confidence 3333333333334467899999999998777777777665555544 444567788888888999998643322110
Q ss_pred hhhhHHHHHHHHhhhhcccChhHHHHHHHHHhhhhc
Q 008510 486 EGQSHVLSAALEIAEEESIEVDSKYRALVAIGTLML 521 (563)
Q Consensus 486 ~~~~~l~~~~~~~l~~~~~~~Ea~~R~l~AlG~l~~ 521 (563)
-..+.++.++..+. ...+.|.+.|+|.-+.++-.
T Consensus 172 -l~~q~~~~~~~Lf~-~~~~~~~l~~~l~~~~ni~~ 205 (254)
T PF04826_consen 172 -LSAQVLSSFLSLFN-SSESKENLLRVLTFFENINE 205 (254)
T ss_pred -HhccchhHHHHHHc-cCCccHHHHHHHHHHHHHHH
Confidence 11234455555554 44677999999999999965
No 342
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=89.00 E-value=29 Score=37.54 Aligned_cols=102 Identities=14% Similarity=0.096 Sum_probs=64.2
Q ss_pred CCEEEEEECCCcEEEEcC-CCceeEEEecCCC------cE--EEEEEcCCCeEEEEeCCCcEEEEc--CCceeEEEecCC
Q 008510 3 GVGIISASHDCTIRLWAL-TGQVLMEMVGHTA------IV--YSIDSHASGLIVSGSEDRFAKIWK--DGVCVQSIEHPG 71 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~------~V--~~v~~~p~g~l~s~s~D~tvriWd--~~~~~~~l~h~~ 71 (563)
+..+..++.|+.|.-.|. +|+.+.++.-... .+ ..+.+..++.++.++.|+.|.-+| +|+.+.......
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~ 140 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFDGRLVALDAETGKQVWKFGNND 140 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecCCCeEEEEECCCCCEeeeecCCC
Confidence 456777888899999998 8988877654332 11 112222225677788899999999 888887776322
Q ss_pred cE---EEEEEcc---CCcEEEEe---------CCCcEEEEEcCCCcee
Q 008510 72 CV---WDAKFLE---NGDIVTAC---------SDGVTRIWTVHSDKVA 104 (563)
Q Consensus 72 ~V---~~v~~~p---~g~i~sgs---------~Dg~Irvwd~~~~~~~ 104 (563)
.+ ..+.-+| ++.++.++ .+|.+.-+|..+++..
T Consensus 141 ~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~ 188 (488)
T cd00216 141 QVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLL 188 (488)
T ss_pred CcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCcee
Confidence 21 1122222 34455554 3678899999988743
No 343
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=88.95 E-value=36 Score=38.87 Aligned_cols=101 Identities=13% Similarity=0.103 Sum_probs=66.1
Q ss_pred CCEEEEEECCCcEEEEcC-CCceeEEEecCCCc--------EEEEEEcC----------------CC-eEEEEeCCCcEE
Q 008510 3 GVGIISASHDCTIRLWAL-TGQVLMEMVGHTAI--------VYSIDSHA----------------SG-LIVSGSEDRFAK 56 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~--------V~~v~~~p----------------~g-~l~s~s~D~tvr 56 (563)
|+.+..|+.++.|.-.|. +|+.+.++.-+... ...+++.. ++ +++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 567778888998888898 89988877533211 11222211 22 677788899988
Q ss_pred EEc--CCceeEEEecCCcEE-------------EEEEcc---CCcEEEEeC----------CCcEEEEEcCCCce
Q 008510 57 IWK--DGVCVQSIEHPGCVW-------------DAKFLE---NGDIVTACS----------DGVTRIWTVHSDKV 103 (563)
Q Consensus 57 iWd--~~~~~~~l~h~~~V~-------------~v~~~p---~g~i~sgs~----------Dg~Irvwd~~~~~~ 103 (563)
-.| +|+....+...+.|. .+.-.| ++.++.|+. +|.|+-||.++|+.
T Consensus 274 ALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl 348 (764)
T TIGR03074 274 ALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGAL 348 (764)
T ss_pred EEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcE
Confidence 888 888887765443331 122223 445666653 68899999999983
No 344
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=88.38 E-value=13 Score=39.63 Aligned_cols=66 Identities=18% Similarity=0.115 Sum_probs=25.7
Q ss_pred EEEEcCCCeEEEEeCCCcEEEEc--CCceeEEEecCCcEEEEEEccCCcEEEEeCCCcEEEEEcCCCceec
Q 008510 37 SIDSHASGLIVSGSEDRFAKIWK--DGVCVQSIEHPGCVWDAKFLENGDIVTACSDGVTRIWTVHSDKVAD 105 (563)
Q Consensus 37 ~v~~~p~g~l~s~s~D~tvriWd--~~~~~~~l~h~~~V~~v~~~p~g~i~sgs~Dg~Irvwd~~~~~~~~ 105 (563)
+.+|.+.+.++.-...++|+|+. ..+....+..+..+..+-. |.++....++.|.+||+.+++...
T Consensus 73 ~~vw~~~n~yAv~~~~~~I~I~kn~~~~~~k~i~~~~~~~~If~---G~LL~~~~~~~i~~yDw~~~~~i~ 140 (443)
T PF04053_consen 73 SFVWSSRNRYAVLESSSTIKIYKNFKNEVVKSIKLPFSVEKIFG---GNLLGVKSSDFICFYDWETGKLIR 140 (443)
T ss_dssp EEEE-TSSEEEEE-TTS-EEEEETTEE-TT-----SS-EEEEE----SSSEEEEETTEEEEE-TTT--EEE
T ss_pred EEEEecCccEEEEECCCeEEEEEcCccccceEEcCCcccceEEc---CcEEEEECCCCEEEEEhhHcceee
Confidence 44555555555555566677654 2222233433323333322 553323333467777777666443
No 345
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.22 E-value=16 Score=35.75 Aligned_cols=88 Identities=15% Similarity=0.153 Sum_probs=57.7
Q ss_pred CCCEEEEEECC-----CcEEEEcC--CCceeEEEecCCCcEEEEEEcCCC-eEEEEeC------C-C-----------cE
Q 008510 2 PGVGIISASHD-----CTIRLWAL--TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSE------D-R-----------FA 55 (563)
Q Consensus 2 ~g~~l~s~s~D-----gtIrlWd~--~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~------D-~-----------tv 55 (563)
||++|...-|| |.|-|||. ..+.+.++.+|.-.-..+.+.+|| .++.+.. | | ++
T Consensus 124 dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSl 203 (366)
T COG3490 124 DGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSL 203 (366)
T ss_pred CCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccE
Confidence 56666666554 78999998 346778888888777899999999 4443321 1 1 12
Q ss_pred EEEc--CCceeEEEe-----cCCcEEEEEEccCCcEEEEeC
Q 008510 56 KIWK--DGVCVQSIE-----HPGCVWDAKFLENGDIVTACS 89 (563)
Q Consensus 56 riWd--~~~~~~~l~-----h~~~V~~v~~~p~g~i~sgs~ 89 (563)
-+-| +|+.++... +.-+|..++..+||++..||.
T Consensus 204 vlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQ 244 (366)
T COG3490 204 VLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQ 244 (366)
T ss_pred EEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEE
Confidence 2223 444444333 334788898888888877764
No 346
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=88.00 E-value=4.7 Score=40.85 Aligned_cols=94 Identities=16% Similarity=0.266 Sum_probs=56.2
Q ss_pred EEEEEECCCcEEEEcC-CCc-eeEEEe-cCCCcEEEEEEcCCCeEEEEeCCCcEEEEc---CCceeEEEe---cCCcEEE
Q 008510 5 GIISASHDCTIRLWAL-TGQ-VLMEMV-GHTAIVYSIDSHASGLIVSGSEDRFAKIWK---DGVCVQSIE---HPGCVWD 75 (563)
Q Consensus 5 ~l~s~s~DgtIrlWd~-~g~-~i~~l~-gH~~~V~~v~~~p~g~l~s~s~D~tvriWd---~~~~~~~l~---h~~~V~~ 75 (563)
+++.|. ++.|.+|++ ..+ ....-. .....+.++....+ .++.|...+.+.++. ....+..+. .+..+.+
T Consensus 100 ~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~-~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~ 177 (321)
T PF03178_consen 100 RLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKN-YILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTA 177 (321)
T ss_dssp EEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETT-EEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEE
T ss_pred EEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecccc-EEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEE
Confidence 344444 467888888 333 332221 12236666666533 777777777777764 344344443 3447788
Q ss_pred EEEccCCc-EEEEeCCCcEEEEEcCC
Q 008510 76 AKFLENGD-IVTACSDGVTRIWTVHS 100 (563)
Q Consensus 76 v~~~p~g~-i~sgs~Dg~Irvwd~~~ 100 (563)
+.+.++++ ++.+..+|.+.++....
T Consensus 178 ~~~l~d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 178 AEFLVDEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp EEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred EEEecCCcEEEEEcCCCeEEEEEECC
Confidence 88886666 88888888888888764
No 347
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=87.59 E-value=14 Score=39.28 Aligned_cols=95 Identities=19% Similarity=0.300 Sum_probs=62.5
Q ss_pred CCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeC-----------CCcEEEEc--CCceeEEE
Q 008510 3 GVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSE-----------DRFAKIWK--DGVCVQSI 67 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~-----------D~tvriWd--~~~~~~~l 67 (563)
|.+++|-..-| |.+|-- +-..++.+. |.+ |.-+.|||.. +|+|=|. ...++||| +|...+++
T Consensus 222 GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp~-Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF 298 (698)
T KOG2314|consen 222 GTYLVTFHKQG-IALWGGESFDRIQRFY-HPG-VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSF 298 (698)
T ss_pred ceEEEEEeccc-eeeecCccHHHHHhcc-CCC-ceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcce
Confidence 55666665555 567765 434444442 544 6788999987 8888442 25799999 88888887
Q ss_pred ec---CCcEE-EEEEccCCcEEEEeCCCcEEEEEcCC
Q 008510 68 EH---PGCVW-DAKFLENGDIVTACSDGVTRIWTVHS 100 (563)
Q Consensus 68 ~h---~~~V~-~v~~~p~g~i~sgs~Dg~Irvwd~~~ 100 (563)
.. +-.+| -+.|+.|+...+.-....|.||+..+
T Consensus 299 ~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtps 335 (698)
T KOG2314|consen 299 PVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPS 335 (698)
T ss_pred eccCCCccccceEEeccCCceeEEeccceEEEEecCc
Confidence 72 23555 35788898844333446788888765
No 348
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=87.44 E-value=41 Score=35.40 Aligned_cols=50 Identities=12% Similarity=0.238 Sum_probs=42.0
Q ss_pred cEEEEcCCCceeEEEecCCCcEEEEEEcCCCeEEEEeCCCcEEEEc-CCce
Q 008510 14 TIRLWALTGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWK-DGVC 63 (563)
Q Consensus 14 tIrlWd~~g~~i~~l~gH~~~V~~v~~~p~g~l~s~s~D~tvriWd-~~~~ 63 (563)
.|++|+..|+.+.++.=-.+.|.++.|+.+..++.-..||+++++| .|+.
T Consensus 62 ~I~iys~sG~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~~ 112 (410)
T PF04841_consen 62 SIQIYSSSGKLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLFGEF 112 (410)
T ss_pred EEEEECCCCCEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCCCce
Confidence 5999999999888865444889999998876778888999999999 6666
No 349
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=86.55 E-value=16 Score=38.72 Aligned_cols=82 Identities=11% Similarity=0.116 Sum_probs=47.7
Q ss_pred CCceeEEEecCCCcEEEEEEcCCC-eEE--EEeCC--CcEEEEc--CCceeEEEecCCcEEEEEEccCCc--EEEEeCCC
Q 008510 21 TGQVLMEMVGHTAIVYSIDSHASG-LIV--SGSED--RFAKIWK--DGVCVQSIEHPGCVWDAKFLENGD--IVTACSDG 91 (563)
Q Consensus 21 ~g~~i~~l~gH~~~V~~v~~~p~g-~l~--s~s~D--~tvriWd--~~~~~~~l~h~~~V~~v~~~p~g~--i~sgs~Dg 91 (563)
+|.....+..-...+..-+|+|++ .++ +=-.. ..+.+++ .++.......++.-..-+|+|||+ +.+...||
T Consensus 181 dg~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg 260 (425)
T COG0823 181 DGYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDG 260 (425)
T ss_pred CCcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCC
Confidence 455555555445667777888887 322 22222 2477777 444444444455555667899998 45666677
Q ss_pred cE--EEEEcCCCc
Q 008510 92 VT--RIWTVHSDK 102 (563)
Q Consensus 92 ~I--rvwd~~~~~ 102 (563)
.. .++|+..+.
T Consensus 261 ~~~iy~~dl~~~~ 273 (425)
T COG0823 261 SPDIYLMDLDGKN 273 (425)
T ss_pred CccEEEEcCCCCc
Confidence 64 444555544
No 350
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=85.99 E-value=36 Score=33.27 Aligned_cols=102 Identities=15% Similarity=0.094 Sum_probs=65.7
Q ss_pred CCCEEEEEECCC--cEEEEcC-CCceeEEEecC-CCcEEEEEEcCCCeEEEEeCCCcEEEEc--CCceeEEEecCCcEEE
Q 008510 2 PGVGIISASHDC--TIRLWAL-TGQVLMEMVGH-TAIVYSIDSHASGLIVSGSEDRFAKIWK--DGVCVQSIEHPGCVWD 75 (563)
Q Consensus 2 ~g~~l~s~s~Dg--tIrlWd~-~g~~i~~l~gH-~~~V~~v~~~p~g~l~s~s~D~tvriWd--~~~~~~~l~h~~~V~~ 75 (563)
+|..+-|+|.-| .||.+|+ +|+......-. .-+=-.++...+....-.=.++...+|| +-+.+.++..++.=|.
T Consensus 55 ~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~~~~~~~y~~EGWG 134 (264)
T PF05096_consen 55 DGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVYDPNTLKKIGTFPYPGEGWG 134 (264)
T ss_dssp TTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEE-SSS--E
T ss_pred CCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEEEccccceEEEEEecCCcceE
Confidence 356677777766 6899999 78876655432 3344566666554444456778899999 7788888887788888
Q ss_pred EEEccCCc-EEEEeCCCcEEEEEcCCCceec
Q 008510 76 AKFLENGD-IVTACSDGVTRIWTVHSDKVAD 105 (563)
Q Consensus 76 v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~ 105 (563)
++ .+|+ ++.......++++|..+.+...
T Consensus 135 Lt--~dg~~Li~SDGS~~L~~~dP~~f~~~~ 163 (264)
T PF05096_consen 135 LT--SDGKRLIMSDGSSRLYFLDPETFKEVR 163 (264)
T ss_dssp EE--ECSSCEEEE-SSSEEEEE-TTT-SEEE
T ss_pred EE--cCCCEEEEECCccceEEECCcccceEE
Confidence 88 3555 6666556788999988766443
No 351
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=85.87 E-value=6.6 Score=32.54 Aligned_cols=99 Identities=21% Similarity=0.088 Sum_probs=56.2
Q ss_pred HhhhhccCCChhHHHHHHHHHHHHHhhhhhcCCchhhhHHHHHHHHhhhhcccChhHHHHHHHHHhhhhchh-HHHHHhh
Q 008510 452 AFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAALEIAEEESIEVDSKYRALVAIGTLMLEG-LVKKIAL 530 (563)
Q Consensus 452 ~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~Ea~~R~l~AlG~l~~~~-~~~~~~~ 530 (563)
.+...+...+..+|..+...+-|++.........-.....+..+.+.+. ..+++.....+.+|++|...+ .......
T Consensus 11 ~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 88 (120)
T cd00020 11 ALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLK--SEDEEVVKAALWALRNLAAGPEDNKLIVL 88 (120)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHh--CCCHHHHHHHHHHHHHHccCcHHHHHHHH
Confidence 3334444556788888888899988652111111111234555666664 357899999999999999833 3444333
Q ss_pred hcChHHHH-HHHhhcCChhHHHHH
Q 008510 531 DFDVGNIA-RVAKASKETKIAEVG 553 (563)
Q Consensus 531 ~~~~~~~~-~~~~~~~~~~i~~~~ 553 (563)
..++-..+ +-+. ..+.++.+.+
T Consensus 89 ~~g~l~~l~~~l~-~~~~~~~~~a 111 (120)
T cd00020 89 EAGGVPKLVNLLD-SSNEDIQKNA 111 (120)
T ss_pred HCCChHHHHHHHh-cCCHHHHHHH
Confidence 33333333 3333 3334444443
No 352
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=85.70 E-value=57 Score=35.26 Aligned_cols=101 Identities=14% Similarity=0.256 Sum_probs=61.8
Q ss_pred CEEEEEECCCcEEEEcC-CCceeEEEecCCCc--EEEEEEcC---CCeEEEEe---------CCCcEEEEc--CCceeEE
Q 008510 4 VGIISASHDCTIRLWAL-TGQVLMEMVGHTAI--VYSIDSHA---SGLIVSGS---------EDRFAKIWK--DGVCVQS 66 (563)
Q Consensus 4 ~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~--V~~v~~~p---~g~l~s~s---------~D~tvriWd--~~~~~~~ 66 (563)
..++.++.|+.|.-+|. +|+.+.++...... -+.+.-+| ++.++.++ .++.+...| +|+.+..
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~ 190 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWR 190 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeE
Confidence 67778888999999999 89988877543321 01111122 24444443 467788888 7887776
Q ss_pred Eec--C-------------------CcEE-EEEEccCC-cEEEEeCCC------------------cEEEEEcCCCcee
Q 008510 67 IEH--P-------------------GCVW-DAKFLENG-DIVTACSDG------------------VTRIWTVHSDKVA 104 (563)
Q Consensus 67 l~h--~-------------------~~V~-~v~~~p~g-~i~sgs~Dg------------------~Irvwd~~~~~~~ 104 (563)
... + ..|| +.++.+.+ .++.++.|+ .|.-+|..+++..
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~ 269 (488)
T cd00216 191 FYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVK 269 (488)
T ss_pred eeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEE
Confidence 652 1 1223 23444433 477776665 6888898888743
No 353
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.43 E-value=2 Score=43.59 Aligned_cols=75 Identities=13% Similarity=0.090 Sum_probs=56.6
Q ss_pred EEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC--eEEEEeCCCcEEEEc---CCceeEEEe---cCCcEEE
Q 008510 5 GIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK---DGVCVQSIE---HPGCVWD 75 (563)
Q Consensus 5 ~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g--~l~s~s~D~tvriWd---~~~~~~~l~---h~~~V~~ 75 (563)
.+..++-+.+|+|.|+ +..++.++..| ..+++++|.-+. .+..|-..|.|.|+| ....+..+. ...+|..
T Consensus 208 Ll~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~ 286 (463)
T KOG1645|consen 208 LLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHK 286 (463)
T ss_pred eeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccCCCchHhhhhhhhccCccee
Confidence 5788999999999999 66777888888 889999998876 788888889999999 333333333 2335666
Q ss_pred EEEcc
Q 008510 76 AKFLE 80 (563)
Q Consensus 76 v~~~p 80 (563)
++..+
T Consensus 287 i~~~~ 291 (463)
T KOG1645|consen 287 IAPVQ 291 (463)
T ss_pred ecccC
Confidence 66544
No 354
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=84.57 E-value=54 Score=38.51 Aligned_cols=58 Identities=9% Similarity=-0.144 Sum_probs=39.8
Q ss_pred CCCEEEEEECCCcEEEEcCCCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc
Q 008510 2 PGVGIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK 59 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd 59 (563)
++..++.+..+|.|.+-|.....+.....-...|.+.+|+||+ .++-...++++.+-+
T Consensus 79 d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT 137 (1265)
T KOG1920|consen 79 DTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMT 137 (1265)
T ss_pred ccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEe
Confidence 3456777888899999888332222222345779999999998 666666677777654
No 355
>PRK02888 nitrous-oxide reductase; Validated
Probab=84.45 E-value=8.2 Score=42.30 Aligned_cols=51 Identities=8% Similarity=0.036 Sum_probs=41.6
Q ss_pred CCcEEEEc--C-----CceeEEEecCCcEEEEEEccCCc--EEEEeCCCcEEEEEcCCCc
Q 008510 52 DRFAKIWK--D-----GVCVQSIEHPGCVWDAKFLENGD--IVTACSDGVTRIWTVHSDK 102 (563)
Q Consensus 52 D~tvriWd--~-----~~~~~~l~h~~~V~~v~~~p~g~--i~sgs~Dg~Irvwd~~~~~ 102 (563)
+++|.+.| + .+.+..+.-+...|.|.++|||+ ++++..+.+|.|.|+.+.+
T Consensus 295 gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k 354 (635)
T PRK02888 295 GSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLD 354 (635)
T ss_pred CCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhh
Confidence 45688898 4 24566677788999999999999 5777889999999998765
No 356
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.22 E-value=12 Score=39.62 Aligned_cols=68 Identities=21% Similarity=0.330 Sum_probs=48.2
Q ss_pred EEEEEEcCCC-eEEEEeCCCcEEE-----Ec------CCceeE----------EEe-cCC-cEEEEEEccCC--c--EEE
Q 008510 35 VYSIDSHASG-LIVSGSEDRFAKI-----WK------DGVCVQ----------SIE-HPG-CVWDAKFLENG--D--IVT 86 (563)
Q Consensus 35 V~~v~~~p~g-~l~s~s~D~tvri-----Wd------~~~~~~----------~l~-h~~-~V~~v~~~p~g--~--i~s 86 (563)
|+.|..++.| .++-.|-||-+.. |- +++..- .+. .+. .+..++|+|+. + +..
T Consensus 106 V~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~i 185 (741)
T KOG4460|consen 106 VYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLVL 185 (741)
T ss_pred EEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEEE
Confidence 6778888998 7777777886543 54 333221 122 233 68899999976 4 788
Q ss_pred EeCCCcEEEEEcCCCc
Q 008510 87 ACSDGVTRIWTVHSDK 102 (563)
Q Consensus 87 gs~Dg~Irvwd~~~~~ 102 (563)
-++|.+||+||....+
T Consensus 186 L~sdnviRiy~lS~~t 201 (741)
T KOG4460|consen 186 LTSDNVIRIYSLSEPT 201 (741)
T ss_pred EecCcEEEEEecCCcc
Confidence 8999999999998765
No 357
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=83.62 E-value=8.5 Score=42.06 Aligned_cols=95 Identities=15% Similarity=0.181 Sum_probs=61.9
Q ss_pred EEECCCcEEEEcC-C----CceeEEEec-CCCcEEEEEEcCCC-eEEEEeCCCcEEEEc-CCceeEEEec--C-CcEEEE
Q 008510 8 SASHDCTIRLWAL-T----GQVLMEMVG-HTAIVYSIDSHASG-LIVSGSEDRFAKIWK-DGVCVQSIEH--P-GCVWDA 76 (563)
Q Consensus 8 s~s~DgtIrlWd~-~----g~~i~~l~g-H~~~V~~v~~~p~g-~l~s~s~D~tvriWd-~~~~~~~l~h--~-~~V~~v 76 (563)
+...+.+.|.|-. . .-....+.+ |...|+--++...+ +++-|+.-|.+.+++ .+...+.++. . +.+...
T Consensus 3 ~~~e~~~~r~~~p~~~~l~~i~~~~~~~~~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~ 82 (726)
T KOG3621|consen 3 SSKELCSDREWAPLTEVLERIPALLQPGFFPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVR 82 (726)
T ss_pred CccccchhhhccchhhhhhhhhhhhccccCcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEE
Confidence 3455666777754 1 112223333 44556555565556 889999999999999 5555555552 2 345555
Q ss_pred EEccCCc-EEEEeCCCcEEEEEcCCCc
Q 008510 77 KFLENGD-IVTACSDGVTRIWTVHSDK 102 (563)
Q Consensus 77 ~~~p~g~-i~sgs~Dg~Irvwd~~~~~ 102 (563)
..+++.. +|.|+..|.|.||-+..+.
T Consensus 83 ~vs~~e~lvAagt~~g~V~v~ql~~~~ 109 (726)
T KOG3621|consen 83 SVSSVEYLVAAGTASGRVSVFQLNKEL 109 (726)
T ss_pred EecchhHhhhhhcCCceEEeehhhccC
Confidence 6677766 7889999999999887743
No 358
>PHA02713 hypothetical protein; Provisional
Probab=83.31 E-value=23 Score=39.03 Aligned_cols=17 Identities=6% Similarity=0.520 Sum_probs=13.5
Q ss_pred EEEEeccc-ceEEEeCcE
Q 008510 161 AYSWDMKE-QKWDKLGEV 177 (563)
Q Consensus 161 ~~~wd~~~-~~w~~~g~v 177 (563)
+..+|..+ ..|..++..
T Consensus 482 ve~Ydp~~~~~W~~~~~m 499 (557)
T PHA02713 482 IFRYNTNTYNGWELITTT 499 (557)
T ss_pred EEEecCCCCCCeeEcccc
Confidence 57899998 799987654
No 359
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=82.90 E-value=5.5 Score=42.08 Aligned_cols=100 Identities=21% Similarity=0.269 Sum_probs=59.0
Q ss_pred CCCE-EEEEECCCcEEEE--cCCCceeEEEecCCCcEEEEEEcCCC--eEEEEeCCCcEEEEc---CCceeEEEe-cCCc
Q 008510 2 PGVG-IISASHDCTIRLW--ALTGQVLMEMVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK---DGVCVQSIE-HPGC 72 (563)
Q Consensus 2 ~g~~-l~s~s~DgtIrlW--d~~g~~i~~l~gH~~~V~~v~~~p~g--~l~s~s~D~tvriWd---~~~~~~~l~-h~~~ 72 (563)
||+. +++...||...|| |+.++.+..+..-.+.-..=.|+||| ...+++..|.-.||- .+...+.++ ..+.
T Consensus 248 DG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~ 327 (425)
T COG0823 248 DGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGG 327 (425)
T ss_pred CCCEEEEEECCCCCccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCC
Confidence 4554 4455557776666 45555455554333333356789999 555667777767776 666556666 3333
Q ss_pred EEEEEEccCCc-EEEEeC-CCc--EEEEEcCCC
Q 008510 73 VWDAKFLENGD-IVTACS-DGV--TRIWTVHSD 101 (563)
Q Consensus 73 V~~v~~~p~g~-i~sgs~-Dg~--Irvwd~~~~ 101 (563)
-++-.|+|||+ |+..+. +|. |.+.|+.++
T Consensus 328 ~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~ 360 (425)
T COG0823 328 NSNPVWSPDGDKIVFESSSGGQWDIDKNDLASG 360 (425)
T ss_pred CcCccCCCCCCEEEEEeccCCceeeEEeccCCC
Confidence 33788999999 654443 444 444444443
No 360
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=82.80 E-value=7.6 Score=40.92 Aligned_cols=48 Identities=21% Similarity=0.452 Sum_probs=41.8
Q ss_pred cEEEEc-CCceeEEEe-cCCcEEEEEEccCCcEEEEeCCCcEEEEEcCCC
Q 008510 54 FAKIWK-DGVCVQSIE-HPGCVWDAKFLENGDIVTACSDGVTRIWTVHSD 101 (563)
Q Consensus 54 tvriWd-~~~~~~~l~-h~~~V~~v~~~p~g~i~sgs~Dg~Irvwd~~~~ 101 (563)
.|+||+ .|+.+.++. ..+.+-++.|..+.++++-..||.+++||....
T Consensus 62 ~I~iys~sG~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~ 111 (410)
T PF04841_consen 62 SIQIYSSSGKLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLFGE 111 (410)
T ss_pred EEEEECCCCCEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCCCc
Confidence 599999 999999988 347999999999877888899999999998743
No 361
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.78 E-value=6 Score=45.30 Aligned_cols=61 Identities=21% Similarity=0.354 Sum_probs=46.4
Q ss_pred eEEEEeCCCcEEEEc-CCceeEEE---ecCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCceec
Q 008510 45 LIVSGSEDRFAKIWK-DGVCVQSI---EHPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVAD 105 (563)
Q Consensus 45 ~l~s~s~D~tvriWd-~~~~~~~l---~h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~ 105 (563)
.++.|+..|.|-..| +++.-+.. ...++|.+++|+.+|. ++.|=.+|.|.+||...++.+.
T Consensus 101 ~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~ 166 (1206)
T KOG2079|consen 101 PIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILK 166 (1206)
T ss_pred eEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCccee
Confidence 577777778888888 65432211 2455999999999999 7778889999999999987443
No 362
>PRK02888 nitrous-oxide reductase; Validated
Probab=82.39 E-value=13 Score=40.82 Aligned_cols=96 Identities=13% Similarity=0.079 Sum_probs=65.4
Q ss_pred CCCEEEEEECCCcEEEEcC-C----C-ceeEEEecCCCcEEEEEEcCCC--eEEEEeCCCcEEEEc--CCc---------
Q 008510 2 PGVGIISASHDCTIRLWAL-T----G-QVLMEMVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK--DGV--------- 62 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~----g-~~i~~l~gH~~~V~~v~~~p~g--~l~s~s~D~tvriWd--~~~--------- 62 (563)
+|++... ++++|.+.|. + + +.+..+. =....+.++++||| .++++..+.+|.|.| ..+
T Consensus 287 dGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~ 363 (635)
T PRK02888 287 AGKFKTI--GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKP 363 (635)
T ss_pred CCCEEEE--CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCc
Confidence 3444443 3678999998 5 3 3444443 34556899999999 567777799999999 212
Q ss_pred ---eeEEEecCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCC
Q 008510 63 ---CVQSIEHPGCVWDAKFLENGD-IVTACSDGVTRIWTVHS 100 (563)
Q Consensus 63 ---~~~~l~h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~ 100 (563)
....+.-...-...+|.++|. ..|--.|+.|-.|++..
T Consensus 364 ~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 364 RDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred cceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 122333333455678988888 66777899999999876
No 363
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=82.33 E-value=8.6 Score=40.87 Aligned_cols=93 Identities=17% Similarity=0.236 Sum_probs=50.4
Q ss_pred CCEEEEEECCCcEEEE-cCCCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEecCCcEEEEEE
Q 008510 3 GVGIISASHDCTIRLW-ALTGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIEHPGCVWDAKF 78 (563)
Q Consensus 3 g~~l~s~s~DgtIrlW-d~~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~h~~~V~~v~~ 78 (563)
.+.+|+-....+|+++ +.+.+..+.+.-. ..+..+-. | .+...+.+ .|.+|| +++.++.+..+. |..|.|
T Consensus 79 ~n~yAv~~~~~~I~I~kn~~~~~~k~i~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~~-vk~V~W 152 (443)
T PF04053_consen 79 RNRYAVLESSSTIKIYKNFKNEVVKSIKLP-FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVSA-VKYVIW 152 (443)
T ss_dssp SSEEEEE-TTS-EEEEETTEE-TT-----S-S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS-E--EEEEE
T ss_pred CccEEEEECCCeEEEEEcCccccceEEcCC-cccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecCC-CcEEEE
Confidence 4567888878899995 4544433344322 12333322 6 55555544 899999 789999998664 999999
Q ss_pred ccCCcEEEEeCCCcEEEEEcCCC
Q 008510 79 LENGDIVTACSDGVTRIWTVHSD 101 (563)
Q Consensus 79 ~p~g~i~sgs~Dg~Irvwd~~~~ 101 (563)
+++|++++-..+..+.+++.+..
T Consensus 153 s~~g~~val~t~~~i~il~~~~~ 175 (443)
T PF04053_consen 153 SDDGELVALVTKDSIYILKYNLE 175 (443)
T ss_dssp -TTSSEEEEE-S-SEEEEEE-HH
T ss_pred ECCCCEEEEEeCCeEEEEEecch
Confidence 99998444444668888877665
No 364
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=81.77 E-value=16 Score=40.93 Aligned_cols=77 Identities=13% Similarity=0.169 Sum_probs=55.1
Q ss_pred EEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc-C-CceeEEEe---cC----CcEE
Q 008510 6 IISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-D-GVCVQSIE---HP----GCVW 74 (563)
Q Consensus 6 l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd-~-~~~~~~l~---h~----~~V~ 74 (563)
+++|=.-|.+.+|.. +.+.-.....|+..|..+.|+|+| .++|+..-|.|.+|. + ...+++.. |. -..|
T Consensus 74 La~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~ 153 (1416)
T KOG3617|consen 74 LAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLW 153 (1416)
T ss_pred HhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEE
Confidence 455556788999998 444444445799999999999999 999999999999999 3 22233322 32 2567
Q ss_pred EEEEccCC
Q 008510 75 DAKFLENG 82 (563)
Q Consensus 75 ~v~~~p~g 82 (563)
|...++++
T Consensus 154 cfRL~~~~ 161 (1416)
T KOG3617|consen 154 CFRLSYDR 161 (1416)
T ss_pred EEecCCCh
Confidence 77777764
No 365
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=81.69 E-value=41 Score=35.22 Aligned_cols=43 Identities=14% Similarity=0.102 Sum_probs=33.5
Q ss_pred cCCcEEEEEEccCCcEEEEeCCCcEEEEEcCCCceeceeeecc
Q 008510 69 HPGCVWDAKFLENGDIVTACSDGVTRIWTVHSDKVADSLELEA 111 (563)
Q Consensus 69 h~~~V~~v~~~p~g~i~sgs~Dg~Irvwd~~~~~~~~~~~~~~ 111 (563)
..+.|.+++.+.=|=++.|..+|.+.|.|+|....+....+..
T Consensus 85 ~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~ 127 (395)
T PF08596_consen 85 KQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRE 127 (395)
T ss_dssp -S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG
T ss_pred cCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccc
Confidence 3568999999866668999999999999999988776666555
No 366
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=81.59 E-value=0.4 Score=51.24 Aligned_cols=96 Identities=17% Similarity=0.191 Sum_probs=63.5
Q ss_pred CEEEEEECCCcEEEEcCCCceeEEEecCCCcEEEEEEcC-CC-eEEEEeCCCcEEEEc----CCceeEEEec-----CCc
Q 008510 4 VGIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHA-SG-LIVSGSEDRFAKIWK----DGVCVQSIEH-----PGC 72 (563)
Q Consensus 4 ~~l~s~s~DgtIrlWd~~g~~i~~l~gH~~~V~~v~~~p-~g-~l~s~s~D~tvriWd----~~~~~~~l~h-----~~~ 72 (563)
+.+.+|.....++++|+...+.....-.+..|..+.+.| .+ ++++-+ |+-|-+|| ..+.++.+.| +..
T Consensus 167 klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~ 245 (783)
T KOG1008|consen 167 KLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQ 245 (783)
T ss_pred chhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccc
Confidence 456677777788888873333222222345567778888 44 666655 99999999 3344555543 334
Q ss_pred EEEEEEccC--CcEEEEeCC-CcEEEEEcCC
Q 008510 73 VWDAKFLEN--GDIVTACSD-GVTRIWTVHS 100 (563)
Q Consensus 73 V~~v~~~p~--g~i~sgs~D-g~Irvwd~~~ 100 (563)
+..++|+|. |.+++.+.| ++||.+|+..
T Consensus 246 l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 246 LFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred eeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 999999995 447777666 6899999864
No 367
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=79.88 E-value=34 Score=34.17 Aligned_cols=96 Identities=15% Similarity=0.283 Sum_probs=62.9
Q ss_pred cEEEEcC-CCceeEE--E--ecCCCcEEEEEEcCCCeEEEEeC-CC-------cEEEEcCCceeEEEe--------cCCc
Q 008510 14 TIRLWAL-TGQVLME--M--VGHTAIVYSIDSHASGLIVSGSE-DR-------FAKIWKDGVCVQSIE--------HPGC 72 (563)
Q Consensus 14 tIrlWd~-~g~~i~~--l--~gH~~~V~~v~~~p~g~l~s~s~-D~-------tvriWd~~~~~~~l~--------h~~~ 72 (563)
++-.-|. +|+.+.. + .-|...|..+++.++|.++.+.. .+ -|-+|+.++.++.+. ..+.
T Consensus 139 sL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y 218 (305)
T PF07433_consen 139 SLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGY 218 (305)
T ss_pred ceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCc
Confidence 3444444 6776665 4 34888899999999994444332 22 234444334344443 3467
Q ss_pred EEEEEEccCCc-E-EEEeCCCcEEEEEcCCCceeceeee
Q 008510 73 VWDAKFLENGD-I-VTACSDGVTRIWTVHSDKVADSLEL 109 (563)
Q Consensus 73 V~~v~~~p~g~-i-~sgs~Dg~Irvwd~~~~~~~~~~~~ 109 (563)
+-+|+++++|. + +|+-..+.+-+||..+++......+
T Consensus 219 ~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l 257 (305)
T PF07433_consen 219 IGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPL 257 (305)
T ss_pred eEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecccc
Confidence 99999999997 4 5666789999999999986544333
No 368
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=79.56 E-value=30 Score=32.64 Aligned_cols=97 Identities=14% Similarity=0.272 Sum_probs=62.9
Q ss_pred CEEEEEECCCcEEEEcCC---CceeEEEecCCCcEEEEEEcCCC-eEEEEeCC---C---cEEEEc----C---Cc----
Q 008510 4 VGIISASHDCTIRLWALT---GQVLMEMVGHTAIVYSIDSHASG-LIVSGSED---R---FAKIWK----D---GV---- 62 (563)
Q Consensus 4 ~~l~s~s~DgtIrlWd~~---g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D---~---tvriWd----~---~~---- 62 (563)
+.++.+...+.|.+|++. .+.+.++.. -+.|..+.++..| +++|-=++ . .+|+|- . ..
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 344444556789999983 345556653 3889999999988 88874222 2 567753 1 11
Q ss_pred -----------------eeEEEe--cCCcEEEEEEcc-CCcEEEEeCCCcEEEEEcCCCc
Q 008510 63 -----------------CVQSIE--HPGCVWDAKFLE-NGDIVTACSDGVTRIWTVHSDK 102 (563)
Q Consensus 63 -----------------~~~~l~--h~~~V~~v~~~p-~g~i~sgs~Dg~Irvwd~~~~~ 102 (563)
.+..+. .+..+.|++..| .|+++.|+ ++++.+|.+....
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~ 166 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQT 166 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEE
Confidence 122222 334688888888 78888876 5688999987654
No 369
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=79.34 E-value=64 Score=31.35 Aligned_cols=17 Identities=18% Similarity=0.133 Sum_probs=8.4
Q ss_pred EEEEeCCCcEEEEEcCC
Q 008510 84 IVTACSDGVTRIWTVHS 100 (563)
Q Consensus 84 i~sgs~Dg~Irvwd~~~ 100 (563)
|..|+.|++.+..|.++
T Consensus 108 Iycgshd~~~yalD~~~ 124 (354)
T KOG4649|consen 108 IYCGSHDGNFYALDPKT 124 (354)
T ss_pred EEEecCCCcEEEecccc
Confidence 44555555555544444
No 370
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=79.20 E-value=3.5 Score=38.93 Aligned_cols=30 Identities=20% Similarity=0.110 Sum_probs=22.7
Q ss_pred CCEEEEEECCCcEEEEcC-CCceeEEEecCC
Q 008510 3 GVGIISASHDCTIRLWAL-TGQVLMEMVGHT 32 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~ 32 (563)
+.+..+++.||.||.|+. .++.+....+|+
T Consensus 114 ~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~ 144 (238)
T KOG2444|consen 114 SSLGCVGAQDGRIRACNIKPNKVLGYVGQHN 144 (238)
T ss_pred cceeEEeccCCceeeeccccCceeeeecccc
Confidence 457788999999999999 566665555565
No 371
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=79.18 E-value=53 Score=36.46 Aligned_cols=65 Identities=18% Similarity=0.215 Sum_probs=43.2
Q ss_pred EEEEEEcCCCeEEEEeCCC-cEEEEc-C-Ccee--EEEecCCcEEEEEEcc--CCc-EEEEeCCCcEEEEEcC
Q 008510 35 VYSIDSHASGLIVSGSEDR-FAKIWK-D-GVCV--QSIEHPGCVWDAKFLE--NGD-IVTACSDGVTRIWTVH 99 (563)
Q Consensus 35 V~~v~~~p~g~l~s~s~D~-tvriWd-~-~~~~--~~l~h~~~V~~v~~~p--~g~-i~sgs~Dg~Irvwd~~ 99 (563)
..-+.-+.-+.++....++ ++.||| . +... +++...+.|.++.|.. +|. |++.|-.+.|.+|...
T Consensus 32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~ 104 (631)
T PF12234_consen 32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQL 104 (631)
T ss_pred cceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEcc
Confidence 3344444445555555555 599999 3 3322 2233467999999974 666 8899999999999864
No 372
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.25 E-value=43 Score=37.25 Aligned_cols=86 Identities=19% Similarity=0.283 Sum_probs=56.1
Q ss_pred cEEEEcCCCceeEEEecCCCcEEEEEEcCCCeEEEEeCCCcEEEEc-CCceeEE--Ee---cCCcEEEEEEccCCcEEEE
Q 008510 14 TIRLWALTGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWK-DGVCVQS--IE---HPGCVWDAKFLENGDIVTA 87 (563)
Q Consensus 14 tIrlWd~~g~~i~~l~gH~~~V~~v~~~p~g~l~s~s~D~tvriWd-~~~~~~~--l~---h~~~V~~v~~~p~g~i~sg 87 (563)
.|+|++.+|+.+.++.-..+.+-.+.|+.+..++.-..||+++|++ .|..++. .. ....|..+.+..+|-.+-.
T Consensus 65 ~I~If~~sG~lL~~~~w~~~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GVavlt 144 (829)
T KOG2280|consen 65 YIRIFNISGQLLGRILWKHGELIGMGWSDDEELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNGVAVLT 144 (829)
T ss_pred eEEEEeccccchHHHHhcCCCeeeecccCCceEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCceEEEe
Confidence 4888888888877765444577789999877888889999999999 6666655 22 2223555555557763332
Q ss_pred eCCCcEEEEEcC
Q 008510 88 CSDGVTRIWTVH 99 (563)
Q Consensus 88 s~Dg~Irvwd~~ 99 (563)
.++..+.+.+..
T Consensus 145 ~~g~v~~i~~~~ 156 (829)
T KOG2280|consen 145 VSGQVILINGVE 156 (829)
T ss_pred cCCcEEEEcCCC
Confidence 333344444443
No 373
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=78.18 E-value=6.6 Score=26.67 Aligned_cols=31 Identities=32% Similarity=0.381 Sum_probs=23.3
Q ss_pred CcEEEEEEcc-CC--c-EEEEeCCCcEEEEEcCCC
Q 008510 71 GCVWDAKFLE-NG--D-IVTACSDGVTRIWTVHSD 101 (563)
Q Consensus 71 ~~V~~v~~~p-~g--~-i~sgs~Dg~Irvwd~~~~ 101 (563)
+.|++++|+| ++ + ++..-.-|.|.|+|+++.
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 4689999997 45 5 555555689999999963
No 374
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=76.99 E-value=31 Score=34.61 Aligned_cols=100 Identities=11% Similarity=0.057 Sum_probs=50.9
Q ss_pred CCCEEEEEECCCcEEEEcCCCc-eeEEEecCCCcEEEEEEcCCCeEEEEeCCCcEEEEcCCceeEEEe-------cCC-c
Q 008510 2 PGVGIISASHDCTIRLWALTGQ-VLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWKDGVCVQSIE-------HPG-C 72 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~~g~-~i~~l~gH~~~V~~v~~~p~g~l~s~s~D~tvriWd~~~~~~~l~-------h~~-~ 72 (563)
||++++.++.....+-|+.... -...-..-...|.++.|.|++.+......+.++.=+......++. ..+ .
T Consensus 155 dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~ 234 (302)
T PF14870_consen 155 DGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDGETWSEPIIPIKTNGYG 234 (302)
T ss_dssp TS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEEEEE---B-TTSS--S-
T ss_pred CCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEeCCcEEEEccCCCCccccccccCCcccCcee
Confidence 4666666655555567776222 122222346789999999998444455888888765122222221 223 5
Q ss_pred EEEEEEccCCcEEEEeCCCcEEEEEcCCCc
Q 008510 73 VWDAKFLENGDIVTACSDGVTRIWTVHSDK 102 (563)
Q Consensus 73 V~~v~~~p~g~i~sgs~Dg~Irvwd~~~~~ 102 (563)
+..++|.+++++..++..|.+.+ ..+.++
T Consensus 235 ~ld~a~~~~~~~wa~gg~G~l~~-S~DgGk 263 (302)
T PF14870_consen 235 ILDLAYRPPNEIWAVGGSGTLLV-STDGGK 263 (302)
T ss_dssp EEEEEESSSS-EEEEESTT-EEE-ESSTTS
T ss_pred eEEEEecCCCCEEEEeCCccEEE-eCCCCc
Confidence 89999999888555555554433 444444
No 375
>PHA02713 hypothetical protein; Provisional
Probab=76.96 E-value=19 Score=39.60 Aligned_cols=28 Identities=4% Similarity=0.240 Sum_probs=16.1
Q ss_pred CCeEEEEecCCC-eEEEEEecccceEEEe
Q 008510 147 AGQTKVVREGDN-GVAYSWDMKEQKWDKL 174 (563)
Q Consensus 147 dg~~~l~~~~~~-~~~~~wd~~~~~w~~~ 174 (563)
+|.+.++++-++ ..+..+|..+.+|..+
T Consensus 512 ~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~ 540 (557)
T PHA02713 512 DNTIMMLHCYESYMLQDTFNVYTYEWNHI 540 (557)
T ss_pred CCEEEEEeeecceeehhhcCcccccccch
Confidence 334444443332 1355788889999855
No 376
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=76.19 E-value=16 Score=34.85 Aligned_cols=82 Identities=16% Similarity=0.249 Sum_probs=46.3
Q ss_pred cCCc-EEEEeCCCcEEEEEcCCCceecee-eecccccccceeEEeeccCCceEEEeCCCCceeeecccCCCeEEEEecCC
Q 008510 80 ENGD-IVTACSDGVTRIWTVHSDKVADSL-ELEAYASELSQYKLCRKKVGGLKLEDLPGLEALQIPGTNAGQTKVVREGD 157 (563)
Q Consensus 80 p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~i~~~d~~~~~~l~~~g~~dg~~~l~~~~~ 157 (563)
.++. +++-+.+|.+++||+.+++..... .+...-.. .. . .+. .+...+....-+.+|.-.+..++
T Consensus 20 ~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~---~~-~---~~~-----~~~~~i~~~~lt~~G~PiV~lsn- 86 (219)
T PF07569_consen 20 CNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNS---SP-V---SDK-----SSSPNITSCSLTSNGVPIVTLSN- 86 (219)
T ss_pred eCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcc---cc-c---ccC-----CCCCcEEEEEEcCCCCEEEEEeC-
Confidence 3555 888899999999999998743221 11111100 00 0 000 22222333334456665555443
Q ss_pred CeEEEEEecccceEEEeC
Q 008510 158 NGVAYSWDMKEQKWDKLG 175 (563)
Q Consensus 158 ~~~~~~wd~~~~~w~~~g 175 (563)
+.+|.|+..-+.|.++.
T Consensus 87 -g~~y~y~~~L~~W~~vs 103 (219)
T PF07569_consen 87 -GDSYSYSPDLGCWIRVS 103 (219)
T ss_pred -CCEEEeccccceeEEec
Confidence 34699999999999774
No 377
>PHA03098 kelch-like protein; Provisional
Probab=75.74 E-value=24 Score=38.51 Aligned_cols=16 Identities=25% Similarity=0.534 Sum_probs=13.5
Q ss_pred EEEEecccceEEEeCc
Q 008510 161 AYSWDMKEQKWDKLGE 176 (563)
Q Consensus 161 ~~~wd~~~~~w~~~g~ 176 (563)
++.||..++.|..++.
T Consensus 458 v~~yd~~~~~W~~~~~ 473 (534)
T PHA03098 458 VESYNPVTNKWTELSS 473 (534)
T ss_pred EEEecCCCCceeeCCC
Confidence 7889999999998754
No 378
>PHA03098 kelch-like protein; Provisional
Probab=75.45 E-value=44 Score=36.47 Aligned_cols=17 Identities=18% Similarity=0.327 Sum_probs=13.3
Q ss_pred EEEEEecccceEEEeCc
Q 008510 160 VAYSWDMKEQKWDKLGE 176 (563)
Q Consensus 160 ~~~~wd~~~~~w~~~g~ 176 (563)
.++.+|..++.|..+..
T Consensus 504 ~v~~yd~~~~~W~~~~~ 520 (534)
T PHA03098 504 EIEVYDDKTNTWTLFCK 520 (534)
T ss_pred eeEEEeCCCCEEEecCC
Confidence 46788999999987654
No 379
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=74.90 E-value=30 Score=38.96 Aligned_cols=114 Identities=9% Similarity=0.073 Sum_probs=64.1
Q ss_pred cchHHHHHHHHHhhcCCCccHHHHHhh--HHHHHHHhhhhccCCChhHHHHHHHHHHHHHhhhhhcCCchhhhHHHHHHH
Q 008510 419 PANLLTGIRAVTNLFKNSSWYSWLQKN--RSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAAL 496 (563)
Q Consensus 419 ~~~~ll~lR~l~N~f~~~~~~~~~~~~--~~~il~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~~~~~~~~l~~~~~ 496 (563)
...+-+++|+|.|+=.++..|..|.+. .+.++..+. +.+.+..+-.+++|+|.-=. .+..-...+++..++
T Consensus 345 ~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~------d~~~~~val~iLy~LS~dd~-~r~~f~~TdcIp~L~ 417 (708)
T PF05804_consen 345 EDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLK------DPNFREVALKILYNLSMDDE-ARSMFAYTDCIPQLM 417 (708)
T ss_pred HHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhC------CCchHHHHHHHHHHhccCHh-hHHHHhhcchHHHHH
Confidence 356788999999999999999887653 466555552 34555567788999997421 111112234566666
Q ss_pred HhhhhcccChhHHHHHHHHHhhhhchh-HHHHHhhhcChHHHHHH
Q 008510 497 EIAEEESIEVDSKYRALVAIGTLMLEG-LVKKIALDFDVGNIARV 540 (563)
Q Consensus 497 ~~l~~~~~~~Ea~~R~l~AlG~l~~~~-~~~~~~~~~~~~~~~~~ 540 (563)
+.+... .+++.-.=++..+-||.... .+..+++.-+++.++++
T Consensus 418 ~~Ll~~-~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~r 461 (708)
T PF05804_consen 418 QMLLEN-SEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKR 461 (708)
T ss_pred HHHHhC-CCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHH
Confidence 666431 22222222333444455432 44444544444444433
No 380
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=73.96 E-value=2.5 Score=47.25 Aligned_cols=55 Identities=15% Similarity=0.138 Sum_probs=37.2
Q ss_pred EEEEEECCCcEEEEcCCCceeEEEecCCCcEEEEE-----------EcCCC-eEEEEeCCCcEEEEc
Q 008510 5 GIISASHDCTIRLWALTGQVLMEMVGHTAIVYSID-----------SHASG-LIVSGSEDRFAKIWK 59 (563)
Q Consensus 5 ~l~s~s~DgtIrlWd~~g~~i~~l~gH~~~V~~v~-----------~~p~g-~l~s~s~D~tvriWd 59 (563)
++..+-.|++|++-..+......+.+|..++..++ .+||| .|+..+.||.++.|.
T Consensus 197 ~ic~~~~~~~i~lL~~~ra~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Q 263 (1283)
T KOG1916|consen 197 YICYGLKGGEIRLLNINRALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQ 263 (1283)
T ss_pred eeeeccCCCceeEeeechHHHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceee
Confidence 34445567888886663333345567887766654 46788 788888888888887
No 381
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.08 E-value=1.1e+02 Score=30.97 Aligned_cols=132 Identities=16% Similarity=0.139 Sum_probs=80.9
Q ss_pred chHHHHHHHHH-hhcCCCccHHHHHhhHHHHHHHhhhhccCCCh--hHHHHHHHH---------------HHHHHhhhhh
Q 008510 420 ANLLTGIRAVT-NLFKNSSWYSWLQKNRSEILDAFSSCYSSSNK--NVQLSYSTL---------------ILNYAVLLIE 481 (563)
Q Consensus 420 ~~~ll~lR~l~-N~f~~~~~~~~~~~~~~~il~~~~~~~~~~~k--~~~~a~atl---------------~~N~s~~~~~ 481 (563)
-..++++|++. -+..|+..|+.++. ..+++.+...+....| .+|-+...+ ++|+|-...+
T Consensus 162 dlt~~~~~~v~~Ac~~hE~nrQ~~m~--~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~ 239 (461)
T KOG4199|consen 162 EVTLLTLQWLQKACIMHEVNRQLFME--LKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAK 239 (461)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHH--hhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHH
Confidence 34566777764 35688888998775 4567777665544333 455443322 2233222222
Q ss_pred cCCchhhhHHHHHHHHhhhhcccChhHHHHHHHHHhhhhchhHHHH-HhhhcChHHHHHHHhhcCChhHHHHHHHHHHHh
Q 008510 482 KKDEEGQSHVLSAALEIAEEESIEVDSKYRALVAIGTLMLEGLVKK-IALDFDVGNIARVAKASKETKIAEVGADIELLA 560 (563)
Q Consensus 482 ~~~~~~~~~l~~~~~~~l~~~~~~~Ea~~R~l~AlG~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~ei~~ll 560 (563)
. -.+..+.|++. ...||+.+--++.+|++|.-..+.-+ ++..-|++.+++-+.++++.-.++++++.+++|
T Consensus 240 e-------~~l~~L~Eal~-A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslL 311 (461)
T KOG4199|consen 240 E-------GILTALTEALQ-AGIDPDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLL 311 (461)
T ss_pred h-------hhHHHHHHHHH-ccCCccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHH
Confidence 1 13556667775 34679999999999999986333332 232335666666666677777778888888888
Q ss_pred h
Q 008510 561 K 561 (563)
Q Consensus 561 ~ 561 (563)
+
T Consensus 312 r 312 (461)
T KOG4199|consen 312 R 312 (461)
T ss_pred H
Confidence 4
No 382
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=72.20 E-value=56 Score=31.71 Aligned_cols=58 Identities=17% Similarity=0.169 Sum_probs=37.9
Q ss_pred Cc-EEEEeCCCcEEEEEcCCCceeceeeec------ccccccceeEEeeccCCceEEEeCCCCce
Q 008510 82 GD-IVTACSDGVTRIWTVHSDKVADSLELE------AYASELSQYKLCRKKVGGLKLEDLPGLEA 139 (563)
Q Consensus 82 g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~i~~~d~~~~~~ 139 (563)
|+ ++.||..|.+++.+.++|.+.-...+. .-.+.-.+.+.++..|++....|..+...
T Consensus 63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~c 127 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGC 127 (354)
T ss_pred CCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccce
Confidence 55 889999999999999988544322221 12223346667778887777777765543
No 383
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=72.15 E-value=46 Score=37.76 Aligned_cols=69 Identities=14% Similarity=0.289 Sum_probs=45.4
Q ss_pred cEEEEEEcCCC-eEEEEeCCCcEEE-----Ec-C-----Cce-e--EEE-------e--cCCcEEEEEEccCC---c-EE
Q 008510 34 IVYSIDSHASG-LIVSGSEDRFAKI-----WK-D-----GVC-V--QSI-------E--HPGCVWDAKFLENG---D-IV 85 (563)
Q Consensus 34 ~V~~v~~~p~g-~l~s~s~D~tvri-----Wd-~-----~~~-~--~~l-------~--h~~~V~~v~~~p~g---~-i~ 85 (563)
.|..|.++|+| .++-.|..+-+.+ |- . |+. + +++ . +...|..+.|+|.+ . ++
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~ 165 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLV 165 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEE
Confidence 36778899999 6666666553222 32 1 111 1 122 1 23479999999964 3 88
Q ss_pred EEeCCCcEEEEEcCCCc
Q 008510 86 TACSDGVTRIWTVHSDK 102 (563)
Q Consensus 86 sgs~Dg~Irvwd~~~~~ 102 (563)
.=.+|+++|+||+...+
T Consensus 166 vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 166 VLTSDNTLRLYDISDPQ 182 (717)
T ss_pred EEecCCEEEEEecCCCC
Confidence 88999999999997544
No 384
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=72.12 E-value=1.1e+02 Score=32.12 Aligned_cols=66 Identities=12% Similarity=0.034 Sum_probs=44.7
Q ss_pred CCcEEEEEEcCCCeEEEEeCCCcEEEEc-CCc-----eeEEEecC---CcEEEEEEccCCcEEEEeCCCcEEEEE
Q 008510 32 TAIVYSIDSHASGLIVSGSEDRFAKIWK-DGV-----CVQSIEHP---GCVWDAKFLENGDIVTACSDGVTRIWT 97 (563)
Q Consensus 32 ~~~V~~v~~~p~g~l~s~s~D~tvriWd-~~~-----~~~~l~h~---~~V~~v~~~p~g~i~sgs~Dg~Irvwd 97 (563)
...+.++.+.+++.++..+.+|.+..=+ .+. ....+..+ ..+.++.|.+++.++.++.+|.+....
T Consensus 280 ~~~l~~v~~~~dg~l~l~g~~G~l~~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~ 354 (398)
T PLN00033 280 ARRIQNMGWRADGGLWLLTRGGGLYVSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRST 354 (398)
T ss_pred ccceeeeeEcCCCCEEEEeCCceEEEecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEeC
Confidence 3567899999888555566777765444 443 23333322 258999999988887778888777654
No 385
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=71.62 E-value=19 Score=34.28 Aligned_cols=59 Identities=19% Similarity=0.298 Sum_probs=40.7
Q ss_pred CC-eEEEEeCCCcEEEEc--CCceeEEE---------------ecCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCc
Q 008510 43 SG-LIVSGSEDRFAKIWK--DGVCVQSI---------------EHPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDK 102 (563)
Q Consensus 43 ~g-~l~s~s~D~tvriWd--~~~~~~~l---------------~h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~ 102 (563)
++ .+..-..+|.+++|| .++++..- .....|.++.+..+|. +++- ++|..+.|+.+-+.
T Consensus 21 ~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~l-sng~~y~y~~~L~~ 98 (219)
T PF07569_consen 21 NGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTL-SNGDSYSYSPDLGC 98 (219)
T ss_pred CCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEE-eCCCEEEeccccce
Confidence 44 788888999999999 44443221 1223788888888888 5544 46788888876554
No 386
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=71.57 E-value=44 Score=36.26 Aligned_cols=115 Identities=20% Similarity=0.258 Sum_probs=65.2
Q ss_pred cCCCcEEEEEEcCCC-----eEEEEeCCCcEEEEc---C----Cce--eEEEec--CCcE--EEEEEccCCcEEEE-eCC
Q 008510 30 GHTAIVYSIDSHASG-----LIVSGSEDRFAKIWK---D----GVC--VQSIEH--PGCV--WDAKFLENGDIVTA-CSD 90 (563)
Q Consensus 30 gH~~~V~~v~~~p~g-----~l~s~s~D~tvriWd---~----~~~--~~~l~h--~~~V--~~v~~~p~g~i~sg-s~D 90 (563)
|.-..|+.++|.|-+ .+.+..-...|.||. + .+. -|+... +-+| ..+-|+|...|.+. ..+
T Consensus 54 GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~ 133 (671)
T PF15390_consen 54 GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTAR 133 (671)
T ss_pred eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecC
Confidence 444569999999852 466667778899998 1 121 122221 1111 23457887774332 222
Q ss_pred CcEEEEEcCCCceeceeeecccccccceeEEeeccCCceEEEeCCCCceeee-cccCCCeEEEEecCCCeEEEEEecccc
Q 008510 91 GVTRIWTVHSDKVADSLELEAYASELSQYKLCRKKVGGLKLEDLPGLEALQI-PGTNAGQTKVVREGDNGVAYSWDMKEQ 169 (563)
Q Consensus 91 g~Irvwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~d~~~~~~l~~-~g~~dg~~~l~~~~~~~~~~~wd~~~~ 169 (563)
..=-+++++.. +.--.-|+.+...+.. .+++||+..++..++--..|+||...+
T Consensus 134 dvSV~~sV~~d-------------------------~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 134 DVSVLPSVHCD-------------------------SSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred ceeEeeeeeeC-------------------------CceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchh
Confidence 22122333221 1212235554444444 488899999999988677999997654
No 387
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=70.95 E-value=55 Score=36.16 Aligned_cols=99 Identities=13% Similarity=0.152 Sum_probs=51.2
Q ss_pred CCEEEEEECCC------cEEEEcC-CCce--eEEEecCCCcEEEEEEcCCCeEEEEeCC------CcEEEEc--CCceeE
Q 008510 3 GVGIISASHDC------TIRLWAL-TGQV--LMEMVGHTAIVYSIDSHASGLIVSGSED------RFAKIWK--DGVCVQ 65 (563)
Q Consensus 3 g~~l~s~s~Dg------tIrlWd~-~g~~--i~~l~gH~~~V~~v~~~p~g~l~s~s~D------~tvriWd--~~~~~~ 65 (563)
+..++.||.++ ++..+|. +++- ...+. +...-.++++..+-..++||.| .++..+| ..+-..
T Consensus 285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~-~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~ 363 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP-SPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP 363 (571)
T ss_pred CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCC-cccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceec
Confidence 45677777773 6777887 4322 22222 2233445555544478889999 3455566 222111
Q ss_pred --EEecCCcEEEEEEccCCc-EEEEeCCCc-----EEEEEcCCCce
Q 008510 66 --SIEHPGCVWDAKFLENGD-IVTACSDGV-----TRIWTVHSDKV 103 (563)
Q Consensus 66 --~l~h~~~V~~v~~~p~g~-i~sgs~Dg~-----Irvwd~~~~~~ 103 (563)
.+..+..=..++.. +|. .|.||.||. |-.||.++.++
T Consensus 364 ~a~M~~~R~~~~v~~l-~g~iYavGG~dg~~~l~svE~YDp~~~~W 408 (571)
T KOG4441|consen 364 VAPMNTKRSDFGVAVL-DGKLYAVGGFDGEKSLNSVECYDPVTNKW 408 (571)
T ss_pred cCCccCccccceeEEE-CCEEEEEeccccccccccEEEecCCCCcc
Confidence 11111111111111 566 588888864 66677766653
No 388
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=70.46 E-value=51 Score=36.39 Aligned_cols=103 Identities=12% Similarity=0.156 Sum_probs=53.2
Q ss_pred CCCCEEEEEECCCc-----EEEEcCCCceeEEEecCCCcEEEEEEcC-CC-eEEEEeCCCc------EEEEc--CCce--
Q 008510 1 MPGVGIISASHDCT-----IRLWALTGQVLMEMVGHTAIVYSIDSHA-SG-LIVSGSEDRF------AKIWK--DGVC-- 63 (563)
Q Consensus 1 ~~g~~l~s~s~Dgt-----IrlWd~~g~~i~~l~gH~~~V~~v~~~p-~g-~l~s~s~D~t------vriWd--~~~~-- 63 (563)
++|...+.||.||. |-.||...........+....++.+... +| ..+.||.|+. |..+| +...
T Consensus 379 l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~ 458 (571)
T KOG4441|consen 379 LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTL 458 (571)
T ss_pred ECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceee
Confidence 36788899999975 4456663333333222333333333322 56 6778886654 45566 2221
Q ss_pred eEEEecCCcEEEEEEccCCc-EEEEeCCCc-----EEEEEcCCCcee
Q 008510 64 VQSIEHPGCVWDAKFLENGD-IVTACSDGV-----TRIWTVHSDKVA 104 (563)
Q Consensus 64 ~~~l~h~~~V~~v~~~p~g~-i~sgs~Dg~-----Irvwd~~~~~~~ 104 (563)
+..+..+..-..++.. ++. .+.||.|+. |..||..+.++.
T Consensus 459 ~~~M~~~R~~~g~a~~-~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~ 504 (571)
T KOG4441|consen 459 IAPMNTRRSGFGVAVL-NGKIYVVGGFDGTSALSSVERYDPETNQWT 504 (571)
T ss_pred cCCcccccccceEEEE-CCEEEEECCccCCCccceEEEEcCCCCcee
Confidence 1122222222223332 455 577887763 667777776643
No 389
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=70.28 E-value=1.1e+02 Score=29.77 Aligned_cols=57 Identities=18% Similarity=0.235 Sum_probs=40.1
Q ss_pred eEEEEeCCCcEEEEc--CCceeEEEecCCcEEEEEEccCCcEEEEeCCCcEEEEEcCCCc
Q 008510 45 LIVSGSEDRFAKIWK--DGVCVQSIEHPGCVWDAKFLENGDIVTACSDGVTRIWTVHSDK 102 (563)
Q Consensus 45 ~l~s~s~D~tvriWd--~~~~~~~l~h~~~V~~v~~~p~g~i~sgs~Dg~Irvwd~~~~~ 102 (563)
.++.|.++| +.+++ .......+.+...|..+...|+-+++..-.|+.++++++..-.
T Consensus 9 ~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~~~~~llvLsd~~l~~~~L~~l~ 67 (275)
T PF00780_consen 9 RLLVGTEDG-LYVYDLSDPSKPTRILKLSSITQLSVLPELNLLLVLSDGQLYVYDLDSLE 67 (275)
T ss_pred EEEEEECCC-EEEEEecCCccceeEeecceEEEEEEecccCEEEEEcCCccEEEEchhhc
Confidence 788888888 78887 2222233334445999999998774444457999999998655
No 390
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=70.14 E-value=31 Score=38.87 Aligned_cols=103 Identities=14% Similarity=0.150 Sum_probs=72.6
Q ss_pred hHHHHHHHHHhhcCCCccHHHHHhhHHHHHHHhhhhccCCChhHHHHHHHHHHHHHhhhhhcCCchhhhHHHHHHHHhhh
Q 008510 421 NLLTGIRAVTNLFKNSSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAALEIAE 500 (563)
Q Consensus 421 ~~ll~lR~l~N~f~~~~~~~~~~~~~~~il~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~~~~~~~~l~~~~~~~l~ 500 (563)
+.-+++++|.|+-.+......|.. ..++..+..++.+.|..+.+++.+++-++|++-.++... ....++..+..++.
T Consensus 265 Llrv~~~lLlNLAed~~ve~kM~~--~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m-~~~giV~kL~kLl~ 341 (708)
T PF05804_consen 265 LLRVAFYLLLNLAEDPRVELKMVN--KGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEM-AESGIVEKLLKLLP 341 (708)
T ss_pred HHHHHHHHHHHHhcChHHHHHHHh--cCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHH-HHcCCHHHHHHHhc
Confidence 446788999999999887776653 566777777788889999999999999999986554321 22234555666664
Q ss_pred hcccChhHHHHHHHHHhhhhchhHHHHH
Q 008510 501 EESIEVDSKYRALVAIGTLMLEGLVKKI 528 (563)
Q Consensus 501 ~~~~~~Ea~~R~l~AlG~l~~~~~~~~~ 528 (563)
. .+++.+-=.|-+|.||-++++++..
T Consensus 342 s--~~~~l~~~aLrlL~NLSfd~~~R~~ 367 (708)
T PF05804_consen 342 S--ENEDLVNVALRLLFNLSFDPELRSQ 367 (708)
T ss_pred C--CCHHHHHHHHHHHHHhCcCHHHHHH
Confidence 3 4556666677777787775544443
No 391
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=69.94 E-value=7.1 Score=43.89 Aligned_cols=86 Identities=13% Similarity=0.155 Sum_probs=47.2
Q ss_pred CcEEEEcC---CCceeEEEe-----cCCCcEEEEEEcC---CC-eEEEEeCCCcEEEEc-CCceeEEEe-cCCcEEEEE-
Q 008510 13 CTIRLWAL---TGQVLMEMV-----GHTAIVYSIDSHA---SG-LIVSGSEDRFAKIWK-DGVCVQSIE-HPGCVWDAK- 77 (563)
Q Consensus 13 gtIrlWd~---~g~~i~~l~-----gH~~~V~~v~~~p---~g-~l~s~s~D~tvriWd-~~~~~~~l~-h~~~V~~v~- 77 (563)
|...||++ .|+..-.+. .....+.-|.|.| +. ++..+-.++++++.. +......+. |...+..++
T Consensus 153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~~l~rsHs~~~~d~a~ 232 (1283)
T KOG1916|consen 153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALRSLFRSHSQRVTDMAF 232 (1283)
T ss_pred hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHHHHHHhcCCCcccHHH
Confidence 56788987 676443332 2334455666666 33 555555667777655 221111122 655555554
Q ss_pred ----------EccCCc-EEEEeCCCcEEEEEc
Q 008510 78 ----------FLENGD-IVTACSDGVTRIWTV 98 (563)
Q Consensus 78 ----------~~p~g~-i~sgs~Dg~Irvwd~ 98 (563)
.+|||. ++..+.||.++.|.+
T Consensus 233 ~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 233 FAEGVLKLASLSPDGTVFAWAISDGSVGFYQI 264 (1283)
T ss_pred HhhchhhheeeCCCCcEEEEeecCCccceeee
Confidence 456666 666666666666654
No 392
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=69.54 E-value=45 Score=34.92 Aligned_cols=72 Identities=13% Similarity=0.218 Sum_probs=49.4
Q ss_pred EecCCCcEEEEEEcCCCeEEEEeCCCcEEEEc-CC-ceeEEEe---------cCCcEEEEEEcc-----CCc----EEEE
Q 008510 28 MVGHTAIVYSIDSHASGLIVSGSEDRFAKIWK-DG-VCVQSIE---------HPGCVWDAKFLE-----NGD----IVTA 87 (563)
Q Consensus 28 l~gH~~~V~~v~~~p~g~l~s~s~D~tvriWd-~~-~~~~~l~---------h~~~V~~v~~~p-----~g~----i~sg 87 (563)
+....+.|.+++.+.-|.++.|.+||++.|-| .| ..+..-. ....|.++.|.- |+. +.+|
T Consensus 82 ~~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 82 LDAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp E---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred eeccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 34557899999998778999999999999999 54 3444322 123688888873 332 6899
Q ss_pred eCCCcEEEEEcC
Q 008510 88 CSDGVTRIWTVH 99 (563)
Q Consensus 88 s~Dg~Irvwd~~ 99 (563)
...|.+.+|.+.
T Consensus 162 Tn~G~v~~fkIl 173 (395)
T PF08596_consen 162 TNSGNVLTFKIL 173 (395)
T ss_dssp ETTSEEEEEEEE
T ss_pred eCCCCEEEEEEe
Confidence 999999999875
No 393
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=69.45 E-value=22 Score=33.89 Aligned_cols=51 Identities=20% Similarity=0.164 Sum_probs=36.2
Q ss_pred CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC---eEEEEeCC
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG---LIVSGSED 52 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g---~l~s~s~D 52 (563)
+|..++++=+.++|...|. +|+.+.+++-.+..|+|+||-..+ ..+|+..+
T Consensus 222 eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGkn~d~~yvT~aa~ 276 (310)
T KOG4499|consen 222 EGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGKNLDILYVTTAAK 276 (310)
T ss_pred CCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCCCccEEEEEehhc
Confidence 3667777778888888887 788888887778888888886543 34454443
No 394
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=68.93 E-value=74 Score=31.06 Aligned_cols=99 Identities=18% Similarity=0.104 Sum_probs=70.1
Q ss_pred CcchHHHHHHHHHhhcCCCccHHHHHhhHHHHHHHhhhhccCCChhHHHHHHHHHHHHHhhhhhcCCchhhhHHHHHHHH
Q 008510 418 LPANLLTGIRAVTNLFKNSSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAALE 497 (563)
Q Consensus 418 ~~~~~ll~lR~l~N~f~~~~~~~~~~~~~~~il~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~~~~~~~~l~~~~~~ 497 (563)
.+..+.-++.++.|+-.+......+-.+..++++.+.+. ..+..+|+|.-.++.|+++...... .....+..+++
T Consensus 67 ~~~vr~~AL~aL~Nls~~~en~~~Ik~~i~~Vc~~~~s~--~lns~~Q~agLrlL~nLtv~~~~~~---~l~~~i~~ll~ 141 (254)
T PF04826_consen 67 NPSVREKALNALNNLSVNDENQEQIKMYIPQVCEETVSS--PLNSEVQLAGLRLLTNLTVTNDYHH---MLANYIPDLLS 141 (254)
T ss_pred ChHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHccCCCcchhh---hHHhhHHHHHH
Confidence 455667799999999888888887777788888776553 2477899999999999997643322 12234455556
Q ss_pred hhhhcccChhHHHHHHHHHhhhhchh
Q 008510 498 IAEEESIEVDSKYRALVAIGTLMLEG 523 (563)
Q Consensus 498 ~l~~~~~~~Ea~~R~l~AlG~l~~~~ 523 (563)
++. ..+..+.+..|-.|.+|...+
T Consensus 142 LL~--~G~~~~k~~vLk~L~nLS~np 165 (254)
T PF04826_consen 142 LLS--SGSEKTKVQVLKVLVNLSENP 165 (254)
T ss_pred HHH--cCChHHHHHHHHHHHHhccCH
Confidence 664 346677777777777777643
No 395
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=68.58 E-value=22 Score=37.90 Aligned_cols=74 Identities=12% Similarity=0.187 Sum_probs=45.9
Q ss_pred hhcHHHHhhcCCCchhhhhhcccchhhHHHHHHHhh--------cCCCCCcchHHHHHHHHHhhcCCCc-cHHHHHh--h
Q 008510 377 VIDILRMTILHPDGASLLLKHVENQNDVLMEMIEKV--------SSNPTLPANLLTGIRAVTNLFKNSS-WYSWLQK--N 445 (563)
Q Consensus 377 ~lDL~Rl~~l~~~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~~~~~~~ll~lR~l~N~f~~~~-~~~~~~~--~ 445 (563)
+|..+|++.++|...+-+. . .+.+..++..+ ......+...+-+||||||+.-+.. .|+.+.. .
T Consensus 1 ~L~~LRiLsRd~~~~~~l~--~---~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~ 75 (446)
T PF10165_consen 1 CLETLRILSRDPTGLDPLF--T---EEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGL 75 (446)
T ss_pred CHHHHHHHccCcccchhhc--c---HHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCc
Confidence 3678999999999877664 2 23455666555 1223345677999999999876554 4544432 2
Q ss_pred HHHHHHHhhh
Q 008510 446 RSEILDAFSS 455 (563)
Q Consensus 446 ~~~il~~~~~ 455 (563)
...+++.+..
T Consensus 76 ~~~l~~~Lk~ 85 (446)
T PF10165_consen 76 AEKLCERLKN 85 (446)
T ss_pred HHHHHHHHHc
Confidence 3445555443
No 396
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=67.54 E-value=1.2e+02 Score=30.43 Aligned_cols=69 Identities=14% Similarity=0.256 Sum_probs=39.9
Q ss_pred ecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEcCCc-eeEEEe--cCCcEEEEEEccCCcEEEEeCCCcEEEEE
Q 008510 29 VGHTAIVYSIDSHASG-LIVSGSEDRFAKIWKDGV-CVQSIE--HPGCVWDAKFLENGDIVTACSDGVTRIWT 97 (563)
Q Consensus 29 ~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd~~~-~~~~l~--h~~~V~~v~~~p~g~i~sgs~Dg~Irvwd 97 (563)
.+-.+.+..+..+++| +++.++.-...+-|+.++ .-+... ....|.++.|.|++.+......|.|+.=+
T Consensus 141 ~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~ 213 (302)
T PF14870_consen 141 SETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSD 213 (302)
T ss_dssp -S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE
T ss_pred cCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEeCCcEEEEcc
Confidence 3445678888889999 555554444566888443 233333 45699999999999876666888888866
No 397
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=67.30 E-value=53 Score=35.92 Aligned_cols=101 Identities=15% Similarity=0.137 Sum_probs=63.1
Q ss_pred CCEEEEEECCCcEEEEcC-CCceeEEEecCC-CcEE----------EEEEcCCCeEEEEeCCCcEEEEc--CCceeEEEe
Q 008510 3 GVGIISASHDCTIRLWAL-TGQVLMEMVGHT-AIVY----------SIDSHASGLIVSGSEDRFAKIWK--DGVCVQSIE 68 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~-~~V~----------~v~~~p~g~l~s~s~D~tvriWd--~~~~~~~l~ 68 (563)
+..++.++.++.|.-.|. +|+.+.++.-.. ..+. .+++. ++.++.++.|+.+.-.| +|+.+....
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~-~~~v~v~t~dg~l~ALDa~TGk~~W~~~ 147 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY-DGKVFFGTLDARLVALDAKTGKVVWSKK 147 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEE-CCEEEEEcCCCEEEEEECCCCCEEeecc
Confidence 456777778888888898 899887765321 1111 12222 23667778899998888 888876655
Q ss_pred cCC--cEEEEEEcc---CCcEEEEeC------CCcEEEEEcCCCcee
Q 008510 69 HPG--CVWDAKFLE---NGDIVTACS------DGVTRIWTVHSDKVA 104 (563)
Q Consensus 69 h~~--~V~~v~~~p---~g~i~sgs~------Dg~Irvwd~~~~~~~ 104 (563)
... .-..+.-.| ++.++.++. +|.|+-+|.++++..
T Consensus 148 ~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~l 194 (527)
T TIGR03075 148 NGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLV 194 (527)
T ss_pred cccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCcee
Confidence 211 111122223 556655543 689999999999743
No 398
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=67.09 E-value=1e+02 Score=32.29 Aligned_cols=63 Identities=10% Similarity=0.081 Sum_probs=46.4
Q ss_pred cEEEEEEcCCCeEEEEeCCCcEEEEc-CCceeEEEe----cCCcEEEEEEccCCcEEEEeCCCcEEEE
Q 008510 34 IVYSIDSHASGLIVSGSEDRFAKIWK-DGVCVQSIE----HPGCVWDAKFLENGDIVTACSDGVTRIW 96 (563)
Q Consensus 34 ~V~~v~~~p~g~l~s~s~D~tvriWd-~~~~~~~l~----h~~~V~~v~~~p~g~i~sgs~Dg~Irvw 96 (563)
.++++.+.+++.++.+|.+|.+.... .|+.-+... .+...+.+.|.++++....+.+|.|--|
T Consensus 329 ~l~~v~~~~d~~~~a~G~~G~v~~s~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~~G~il~~ 396 (398)
T PLN00033 329 GILDVGYRSKKEAWAAGGSGILLRSTDGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLGNDGVLLRY 396 (398)
T ss_pred ceEEEEEcCCCcEEEEECCCcEEEeCCCCcceeEccccCCCCcceeEEEEcCCCceEEEeCCcEEEEe
Confidence 48899999888777888999888887 555433332 3457899999888886666678877554
No 399
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=66.26 E-value=68 Score=33.51 Aligned_cols=112 Identities=13% Similarity=0.066 Sum_probs=63.6
Q ss_pred chHHHHHHHHHhh-cCCCccHHHHHhh--HHHHHHHhhhhccCCCh---hHHHHHHHHHHHHHhhhhhcCCchhhhHHHH
Q 008510 420 ANLLTGIRAVTNL-FKNSSWYSWLQKN--RSEILDAFSSCYSSSNK---NVQLSYSTLILNYAVLLIEKKDEEGQSHVLS 493 (563)
Q Consensus 420 ~~~ll~lR~l~N~-f~~~~~~~~~~~~--~~~il~~~~~~~~~~~k---~~~~a~atl~~N~s~~~~~~~~~~~~~~l~~ 493 (563)
-...=++|+|.|. ..+..+|..+... ..-+++.+......+++ .+..-+-.++.||..-...-+.......++.
T Consensus 102 ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~ 181 (604)
T KOG4500|consen 102 EVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLN 181 (604)
T ss_pred cHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHH
Confidence 3457799999996 4667778776543 34455555544444443 3445556788898764222111111122333
Q ss_pred HHHHhhhhcccChhHHHHHHHHHhhhhc--hhHHHHHhhh
Q 008510 494 AALEIAEEESIEVDSKYRALVAIGTLML--EGLVKKIALD 531 (563)
Q Consensus 494 ~~~~~l~~~~~~~Ea~~R~l~AlG~l~~--~~~~~~~~~~ 531 (563)
.+...+.-.-.+.+--..+|++.|+|+. ...+...+++
T Consensus 182 tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d 221 (604)
T KOG4500|consen 182 TLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKD 221 (604)
T ss_pred HHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhcc
Confidence 3444443334566777899999999988 2234444443
No 400
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=65.81 E-value=99 Score=31.10 Aligned_cols=137 Identities=18% Similarity=0.148 Sum_probs=69.6
Q ss_pred cCCCchhhhhhcccc-hhhHHHHHHHhhcCCCCCcchHHHHHHHHHhhcCCCccHHHH--HhhHHHHHHHhhhhccCCCh
Q 008510 386 LHPDGASLLLKHVEN-QNDVLMEMIEKVSSNPTLPANLLTGIRAVTNLFKNSSWYSWL--QKNRSEILDAFSSCYSSSNK 462 (563)
Q Consensus 386 l~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~ll~lR~l~N~f~~~~~~~~~--~~~~~~il~~~~~~~~~~~k 462 (563)
-+|.....|...... ....+..++..... .....+..++++++++.........- ......+++.+...+.+.+.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~--~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~ 164 (312)
T PF03224_consen 87 DDPSRVELFLELAKQDDSDPYSPFLKLLDR--NDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDS 164 (312)
T ss_dssp -SSSSHHHHHHHHH-TTH--HHHHHHH-S---SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH
T ss_pred cCHHHHHHHHHhcccccchhHHHHHHHhcC--CCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCc
Confidence 455555555421111 12256666663332 24566899999999999887765543 23345666666655544455
Q ss_pred hHHHHHHHHHHHHHhhhhhcCCchhhhHHHHHHHHhh-----hhcccChhHHHHHHHHHhhhhchhHH
Q 008510 463 NVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAALEIA-----EEESIEVDSKYRALVAIGTLMLEGLV 525 (563)
Q Consensus 463 ~~~~a~atl~~N~s~~~~~~~~~~~~~~l~~~~~~~l-----~~~~~~~Ea~~R~l~AlG~l~~~~~~ 525 (563)
+++-.+..++-|+...-.. |..-.....+..+..++ .....+....|-++.++=.|-++++.
T Consensus 165 ~~~~~av~~L~~LL~~~~~-R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~ 231 (312)
T PF03224_consen 165 ELQYIAVQCLQNLLRSKEY-RQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEI 231 (312)
T ss_dssp ---HHHHHHHHHHHTSHHH-HHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHH
T ss_pred chHHHHHHHHHHHhCcchh-HHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHH
Confidence 6666666777776422111 21111133344444555 22456779999999998888775433
No 401
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=65.46 E-value=1.1e+02 Score=30.79 Aligned_cols=87 Identities=15% Similarity=0.154 Sum_probs=49.7
Q ss_pred EEEEcCCCceeEEEecCCCcEEEEEEcCCC-e-EEEEeCCCcEEEEc-C---Cce-----eEEEe-cCCcEEEEEEccCC
Q 008510 15 IRLWALTGQVLMEMVGHTAIVYSIDSHASG-L-IVSGSEDRFAKIWK-D---GVC-----VQSIE-HPGCVWDAKFLENG 82 (563)
Q Consensus 15 IrlWd~~g~~i~~l~gH~~~V~~v~~~p~g-~-l~s~s~D~tvriWd-~---~~~-----~~~l~-h~~~V~~v~~~p~g 82 (563)
|...+..|..++.+.+|-..-+.++|+||+ . .++=+..+.+.-|+ . +.. ...+. .++..-.++...+|
T Consensus 145 lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG 224 (307)
T COG3386 145 LYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADG 224 (307)
T ss_pred EEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCC
Confidence 333343566677777776667899999999 4 44434445565555 2 111 11111 34455556666677
Q ss_pred cEE-EEeCCC-cEEEEEcCCCc
Q 008510 83 DIV-TACSDG-VTRIWTVHSDK 102 (563)
Q Consensus 83 ~i~-sgs~Dg-~Irvwd~~~~~ 102 (563)
.+. ++..+| .|.+|+.+ ++
T Consensus 225 ~lw~~a~~~g~~v~~~~pd-G~ 245 (307)
T COG3386 225 NLWVAAVWGGGRVVRFNPD-GK 245 (307)
T ss_pred CEEEecccCCceEEEECCC-Cc
Confidence 754 333333 78888888 65
No 402
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=65.31 E-value=62 Score=36.35 Aligned_cols=95 Identities=16% Similarity=0.248 Sum_probs=63.6
Q ss_pred CCEEEEEECCCcEEEEcCC--------C----c---------eeEEEecCCCcEEEEEEc--CCC-eEEEEeCCCcEEEE
Q 008510 3 GVGIISASHDCTIRLWALT--------G----Q---------VLMEMVGHTAIVYSIDSH--ASG-LIVSGSEDRFAKIW 58 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~~--------g----~---------~i~~l~gH~~~V~~v~~~--p~g-~l~s~s~D~tvriW 58 (563)
.+.|+.|..||.|.+|... . + +--.+. -...+++++++ ... .+|.++.-..|.||
T Consensus 114 ~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVF 192 (717)
T PF08728_consen 114 EEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTVF 192 (717)
T ss_pred eeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEEE
Confidence 4679999999999999641 1 0 111111 23467899998 555 67777777788888
Q ss_pred c-C---Cc--eeEEEecCCcEEEEEEccC-----Cc--EEEEeCCCcEEEEEc
Q 008510 59 K-D---GV--CVQSIEHPGCVWDAKFLEN-----GD--IVTACSDGVTRIWTV 98 (563)
Q Consensus 59 d-~---~~--~~~~l~h~~~V~~v~~~p~-----g~--i~sgs~Dg~Irvwd~ 98 (563)
- . .+ ......|...|-+|+|.++ |. +++++-.|.+-+|++
T Consensus 193 af~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 193 AFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 7 1 11 1112336668999999874 32 667888999988887
No 403
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=65.28 E-value=1.7e+02 Score=31.43 Aligned_cols=77 Identities=19% Similarity=0.156 Sum_probs=42.5
Q ss_pred CCCcEEEEcCCCceeEEEecCCCcEEEEEEcCCCeEEEEeCCCcEEEEc-CCceeEEEecCCc----EEEEEEccCCc-E
Q 008510 11 HDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWK-DGVCVQSIEHPGC----VWDAKFLENGD-I 84 (563)
Q Consensus 11 ~DgtIrlWd~~g~~i~~l~gH~~~V~~v~~~p~g~l~s~s~D~tvriWd-~~~~~~~l~h~~~----V~~v~~~p~g~-i 84 (563)
......+.|.+|..+..+.........+...++|.+..++. ..++..| .|+.+.....+.. =+.+...|+|+ +
T Consensus 126 ~~~~~~~iD~~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~-~~~~e~D~~G~v~~~~~l~~~~~~~HHD~~~l~nGn~L 204 (477)
T PF05935_consen 126 SSSYTYLIDNNGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG-NRLYEIDLLGKVIWEYDLPGGYYDFHHDIDELPNGNLL 204 (477)
T ss_dssp BEEEEEEEETTS-EEEEE-GGGT--SSEEE-TTS-EEEEEB-TEEEEE-TT--EEEEEE--TTEE-B-S-EEE-TTS-EE
T ss_pred CCceEEEECCCccEEEEEccCccccceeeEcCCCCEEEecC-CceEEEcCCCCEEEeeecCCcccccccccEECCCCCEE
Confidence 56667788888888777654333322266778884444444 7889999 8888887775553 36788889999 5
Q ss_pred EEEe
Q 008510 85 VTAC 88 (563)
Q Consensus 85 ~sgs 88 (563)
+.+.
T Consensus 205 ~l~~ 208 (477)
T PF05935_consen 205 ILAS 208 (477)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 5444
No 404
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=65.09 E-value=2.1e+02 Score=31.06 Aligned_cols=109 Identities=12% Similarity=0.080 Sum_probs=70.3
Q ss_pred CcchHHHHHHHHHhhcCCCccHHHHHhhHHHHHHHhhhhccCCChhHHHHHHHHHHHHHhhhhhcCCchh-hhHHHHHHH
Q 008510 418 LPANLLTGIRAVTNLFKNSSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDEEG-QSHVLSAAL 496 (563)
Q Consensus 418 ~~~~~ll~lR~l~N~f~~~~~~~~~~~~~~~il~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~~~~~-~~~l~~~~~ 496 (563)
.+..+.++++.+.|+..+..+...+.. -..++..+..++..++-.+.-+++.++-+++-. ....+.- ...++..+.
T Consensus 90 ~~~Vr~l~l~~l~~~~~~~~~~~~~~~-~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~--~~~~~~l~~~~~~~~L~ 166 (503)
T PF10508_consen 90 SPKVRRLALKQLGRIARHSEGAAQLLV-DNELLPLIIQCLRDPDLSVAKAAIKALKKLASH--PEGLEQLFDSNLLSKLK 166 (503)
T ss_pred CHHHHHHHHHHHHHHhcCCHHHHHHhc-CccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCC--chhHHHHhCcchHHHHH
Confidence 456789999999999988877443332 244566666777777888888999999998742 1100000 001134444
Q ss_pred HhhhhcccChhHHHHHHHHHhhhhc-hhHHHHHhhh
Q 008510 497 EIAEEESIEVDSKYRALVAIGTLML-EGLVKKIALD 531 (563)
Q Consensus 497 ~~l~~~~~~~Ea~~R~l~AlG~l~~-~~~~~~~~~~ 531 (563)
..+. ..++...+|.+-.+..+.. +.+..+.+..
T Consensus 167 ~l~~--~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~ 200 (503)
T PF10508_consen 167 SLMS--QSSDIVRCRVYELLVEIASHSPEAAEAVVN 200 (503)
T ss_pred HHHh--ccCHHHHHHHHHHHHHHHhcCHHHHHHHHh
Confidence 4442 3467899999999999876 5555555544
No 405
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=64.62 E-value=1.6e+02 Score=29.56 Aligned_cols=87 Identities=24% Similarity=0.221 Sum_probs=52.7
Q ss_pred cEEEEcC-CCceeEEEecCC-CcEEEEEE---cCC----C-eEEEEeC----------CCcEEEEc-CC-----ceeEEE
Q 008510 14 TIRLWAL-TGQVLMEMVGHT-AIVYSIDS---HAS----G-LIVSGSE----------DRFAKIWK-DG-----VCVQSI 67 (563)
Q Consensus 14 tIrlWd~-~g~~i~~l~gH~-~~V~~v~~---~p~----g-~l~s~s~----------D~tvriWd-~~-----~~~~~l 67 (563)
.|++.|. +.+.+.++.-.. ..+.+++. ..+ . .++.|.. .|.+.+++ .. ..+..+
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i 82 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI 82 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence 5888888 677766654322 34455443 321 2 4444432 28899999 33 133333
Q ss_pred ---ecCCcEEEEEEccCCcEEEEeCCCcEEEEEcCCCc
Q 008510 68 ---EHPGCVWDAKFLENGDIVTACSDGVTRIWTVHSDK 102 (563)
Q Consensus 68 ---~h~~~V~~v~~~p~g~i~sgs~Dg~Irvwd~~~~~ 102 (563)
..++.|.+++-. +|.++.+ .++.|++|++...+
T Consensus 83 ~~~~~~g~V~ai~~~-~~~lv~~-~g~~l~v~~l~~~~ 118 (321)
T PF03178_consen 83 HSTEVKGPVTAICSF-NGRLVVA-VGNKLYVYDLDNSK 118 (321)
T ss_dssp EEEEESS-EEEEEEE-TTEEEEE-ETTEEEEEEEETTS
T ss_pred EEEeecCcceEhhhh-CCEEEEe-ecCEEEEEEccCcc
Confidence 377899999887 5555444 45899999998876
No 406
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=63.48 E-value=1.5e+02 Score=28.82 Aligned_cols=98 Identities=18% Similarity=0.148 Sum_probs=60.4
Q ss_pred CCEEEEEECCCcEEEEcCCCceeEEEecCC-CcEEEEEEcCCCeEEEEe-CCCcEEEEc---CCce-----eEEEe----
Q 008510 3 GVGIISASHDCTIRLWALTGQVLMEMVGHT-AIVYSIDSHASGLIVSGS-EDRFAKIWK---DGVC-----VQSIE---- 68 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~~g~~i~~l~gH~-~~V~~v~~~p~g~l~s~s-~D~tvriWd---~~~~-----~~~l~---- 68 (563)
+..++.....+.|...+.+|+.++++.-.. +-.-.|++..++.++... .++.+.+.+ ..+. .+.+.
T Consensus 34 ~tLfaV~d~~~~i~els~~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~ 113 (248)
T PF06977_consen 34 GTLFAVQDEPGEIYELSLDGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFP 113 (248)
T ss_dssp TEEEEEETTTTEEEEEETT--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S
T ss_pred CeEEEEECCCCEEEEEcCCCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccc
Confidence 456667777788877788999888875432 446788988888544445 478888777 2211 23333
Q ss_pred --cCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCC
Q 008510 69 --HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHS 100 (563)
Q Consensus 69 --h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~ 100 (563)
+...+-.++|.|.++ +..+....-.++|.++.
T Consensus 114 ~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~ 148 (248)
T PF06977_consen 114 NKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNG 148 (248)
T ss_dssp ---SS--EEEEEETTTTEEEEEEESSSEEEEEEES
T ss_pred cCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEcc
Confidence 234689999999765 77777776667776654
No 407
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=63.37 E-value=9.4 Score=41.99 Aligned_cols=91 Identities=21% Similarity=0.241 Sum_probs=56.6
Q ss_pred CCEEEEEECCCcEEEEcC-CCce--eEEEecCCCcEEEEEEcCCCeEEEEeCCCcEEEEc-CCceeEEEe----cCCcEE
Q 008510 3 GVGIISASHDCTIRLWAL-TGQV--LMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWK-DGVCVQSIE----HPGCVW 74 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~-~g~~--i~~l~gH~~~V~~v~~~p~g~l~s~s~D~tvriWd-~~~~~~~l~----h~~~V~ 74 (563)
|..|++++.||+|++|+. ..+. +.+. .-+-+.+.|...| +++...|+.+.-|. +|-..|.+. ......
T Consensus 26 ~~s~v~~~~d~si~lfn~~~r~qski~~~---~~p~~nlv~tnhg-l~~~tsdrr~la~~~dgvvqqqfdyndqsekefs 101 (1636)
T KOG3616|consen 26 GQSFVLAHQDGSIILFNFIPRRQSKICEE---AKPKENLVFTNHG-LVTATSDRRALAWKEDGVVQQQFDYNDQSEKEFS 101 (1636)
T ss_pred CceEEEEecCCcEEEEeecccchhhhhhh---cCCccceeeeccc-eEEEeccchhheeeccCcchhhccccchhhhhcc
Confidence 567999999999999998 3222 2222 2233455565555 66677799999999 776666665 222566
Q ss_pred EEEEccCCcEEEEeCCCcEEEEE
Q 008510 75 DAKFLENGDIVTACSDGVTRIWT 97 (563)
Q Consensus 75 ~v~~~p~g~i~sgs~Dg~Irvwd 97 (563)
++.+.|...=+.|..-|-|.-+|
T Consensus 102 s~~cdptaqnvvgtlcggv~q~d 124 (1636)
T KOG3616|consen 102 SILCDPTAQNVVGTLCGGVEQFD 124 (1636)
T ss_pred ceecCchhhhhhhhhccceeeeh
Confidence 77777755433344444444444
No 408
>PRK13684 Ycf48-like protein; Provisional
Probab=63.28 E-value=80 Score=32.17 Aligned_cols=97 Identities=11% Similarity=0.047 Sum_probs=53.6
Q ss_pred EEEEEECCCcEEE-EcCCCceeEEEe-cCCCcEEEEEEcCCCeEEEEeCCCcEEEE-c-CCceeEEEecC-----CcEEE
Q 008510 5 GIISASHDCTIRL-WALTGQVLMEMV-GHTAIVYSIDSHASGLIVSGSEDRFAKIW-K-DGVCVQSIEHP-----GCVWD 75 (563)
Q Consensus 5 ~l~s~s~DgtIrl-Wd~~g~~i~~l~-gH~~~V~~v~~~p~g~l~s~s~D~tvriW-d-~~~~~~~l~h~-----~~V~~ 75 (563)
.++..+..|.+.. ++-.++....+. +-...++++.+.+++.++..+..|.+++= + .+..-+....+ ..+.+
T Consensus 185 ~~v~~g~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~ 264 (334)
T PRK13684 185 KYVAVSSRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLARGGQIRFNDPDDLESWSKPIIPEITNGYGYLD 264 (334)
T ss_pred eEEEEeCCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEecCCEEEEccCCCCCccccccCCccccccceee
Confidence 3444444554432 222333222222 22356888999988844555677877653 2 33332222211 25788
Q ss_pred EEEccCCcEEEEeCCCcEEEEEcCCCc
Q 008510 76 AKFLENGDIVTACSDGVTRIWTVHSDK 102 (563)
Q Consensus 76 v~~~p~g~i~sgs~Dg~Irvwd~~~~~ 102 (563)
+.+.|++.+..++.+|.+. ...+.++
T Consensus 265 v~~~~~~~~~~~G~~G~v~-~S~d~G~ 290 (334)
T PRK13684 265 LAYRTPGEIWAGGGNGTLL-VSKDGGK 290 (334)
T ss_pred EEEcCCCCEEEEcCCCeEE-EeCCCCC
Confidence 9999988876677777665 3445443
No 409
>PHA02790 Kelch-like protein; Provisional
Probab=63.17 E-value=1.8e+02 Score=31.36 Aligned_cols=99 Identities=14% Similarity=0.031 Sum_probs=45.4
Q ss_pred CCCEEEEEECCC-----cEEEEcC-CCcee--EEEecCCCcEEEEEEcCCC-eEEEEeCC--CcEEEEc-CCceeEEEe-
Q 008510 2 PGVGIISASHDC-----TIRLWAL-TGQVL--MEMVGHTAIVYSIDSHASG-LIVSGSED--RFAKIWK-DGVCVQSIE- 68 (563)
Q Consensus 2 ~g~~l~s~s~Dg-----tIrlWd~-~g~~i--~~l~gH~~~V~~v~~~p~g-~l~s~s~D--~tvriWd-~~~~~~~l~- 68 (563)
++..++.||.++ ++..||. +++.. ..+...... .+++. -+| ..+.||.+ .++..|| ....-..+.
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~-~~~v~-~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~ 348 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLY-ASGVP-ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPS 348 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhc-ceEEE-ECCEEEEECCcCCCCceEEEECCCCeEEECCC
Confidence 345567777543 4566776 33221 111111111 12222 355 66667754 3577777 322222222
Q ss_pred --cCCcEEEEEEccCCc-EEEEeCCC---cEEEEEcCCCce
Q 008510 69 --HPGCVWDAKFLENGD-IVTACSDG---VTRIWTVHSDKV 103 (563)
Q Consensus 69 --h~~~V~~v~~~p~g~-i~sgs~Dg---~Irvwd~~~~~~ 103 (563)
++..-.+++ .-+|. .+.||.++ .+..||.++.++
T Consensus 349 l~~~r~~~~~~-~~~g~IYviGG~~~~~~~ve~ydp~~~~W 388 (480)
T PHA02790 349 LLKPRCNPAVA-SINNVIYVIGGHSETDTTTEYLLPNHDQW 388 (480)
T ss_pred CCCCCcccEEE-EECCEEEEecCcCCCCccEEEEeCCCCEE
Confidence 222211222 22566 46666553 366777776654
No 410
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=62.74 E-value=3.1 Score=44.80 Aligned_cols=88 Identities=15% Similarity=0.177 Sum_probs=58.6
Q ss_pred CCCcEEEEcC-CC--cee--EEEec-CCCcEEEEEEcCCC-eEEEEeCCCcEEEEc-CCceeEEEe-cCCcEEEEEEcc-
Q 008510 11 HDCTIRLWAL-TG--QVL--MEMVG-HTAIVYSIDSHASG-LIVSGSEDRFAKIWK-DGVCVQSIE-HPGCVWDAKFLE- 80 (563)
Q Consensus 11 ~DgtIrlWd~-~g--~~i--~~l~g-H~~~V~~v~~~p~g-~l~s~s~D~tvriWd-~~~~~~~l~-h~~~V~~v~~~p- 80 (563)
+|..++|||. ++ .+. ..+.+ ......+++|..+. .+.+|...+.++++| ...+.+.-. .+..|..+.+.|
T Consensus 127 nds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~ 206 (783)
T KOG1008|consen 127 NDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPF 206 (783)
T ss_pred ccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCC
Confidence 5788999998 44 111 12222 33455688888666 677888888999999 444433333 334677788888
Q ss_pred CCcEEEEeCCCcEEEEEc
Q 008510 81 NGDIVTACSDGVTRIWTV 98 (563)
Q Consensus 81 ~g~i~sgs~Dg~Irvwd~ 98 (563)
.+.-++...||.|-+||.
T Consensus 207 ~~nY~cs~~dg~iAiwD~ 224 (783)
T KOG1008|consen 207 SPNYFCSNSDGDIAIWDT 224 (783)
T ss_pred CCCceeccccCceeeccc
Confidence 666455556999999993
No 411
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=62.61 E-value=69 Score=31.17 Aligned_cols=75 Identities=19% Similarity=0.168 Sum_probs=50.9
Q ss_pred EEEecCCCcEEEEEEcCCC--eEEEEeCCCcEEEEc-CCceeEEEe-c-CCcEEEEEEccCCcEEEEe-CCCcEEEEEcC
Q 008510 26 MEMVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK-DGVCVQSIE-H-PGCVWDAKFLENGDIVTAC-SDGVTRIWTVH 99 (563)
Q Consensus 26 ~~l~gH~~~V~~v~~~p~g--~l~s~s~D~tvriWd-~~~~~~~l~-h-~~~V~~v~~~p~g~i~sgs-~Dg~Irvwd~~ 99 (563)
+.+.|-...+..++|+|+. .++...+++.|...+ +|+.++.+. . -+..-.|++..+|.++... .++.+.++++.
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 3455666679999999975 666677777887777 889999888 3 2478899999888855555 48999999985
Q ss_pred C
Q 008510 100 S 100 (563)
Q Consensus 100 ~ 100 (563)
.
T Consensus 95 ~ 95 (248)
T PF06977_consen 95 D 95 (248)
T ss_dssp -
T ss_pred c
Confidence 4
No 412
>PRK13616 lipoprotein LpqB; Provisional
Probab=62.08 E-value=49 Score=36.66 Aligned_cols=91 Identities=13% Similarity=0.203 Sum_probs=49.6
Q ss_pred CCCEEEEEE------CCCcEEEE--cCCCceeEEEecCCCcEEEEEEcCCC-eEEEEeCC-CcEEEEc-C-CceeEEE--
Q 008510 2 PGVGIISAS------HDCTIRLW--ALTGQVLMEMVGHTAIVYSIDSHASG-LIVSGSED-RFAKIWK-D-GVCVQSI-- 67 (563)
Q Consensus 2 ~g~~l~s~s------~DgtIrlW--d~~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D-~tvriWd-~-~~~~~~l-- 67 (563)
+|+.++..- +|+.-.|| +..+.......|. ....-.|+|+| .+++.+.. ..+++.+ . ...+..+
T Consensus 360 dG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~v 437 (591)
T PRK13616 360 SGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPV 437 (591)
T ss_pred CCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecCC--CCCCceECCCCCceEEEecCcceEEEeccCCCceEEEEec
Confidence 455554444 35444555 4444443333443 36778899997 56655433 2344444 1 1122211
Q ss_pred -------ecCCcEEEEEEccCCc-EEEEeCCCcEEE
Q 008510 68 -------EHPGCVWDAKFLENGD-IVTACSDGVTRI 95 (563)
Q Consensus 68 -------~h~~~V~~v~~~p~g~-i~sgs~Dg~Irv 95 (563)
...+.|..+.|+|||. ++... +|.|.+
T Consensus 438 d~ge~~~~~~g~Issl~wSpDG~RiA~i~-~g~v~V 472 (591)
T PRK13616 438 DASAVASRVPGPISELQLSRDGVRAAMII-GGKVYL 472 (591)
T ss_pred cCchhhhccCCCcCeEEECCCCCEEEEEE-CCEEEE
Confidence 2245799999999998 55443 465555
No 413
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=62.07 E-value=10 Score=43.88 Aligned_cols=96 Identities=8% Similarity=-0.019 Sum_probs=67.1
Q ss_pred EEEEEECCCcEEEEcC-CC-----ceeE------EEecCCCcEEEEEEcCCC--eEEEEeCCCcEEEEc---CCceeEEE
Q 008510 5 GIISASHDCTIRLWAL-TG-----QVLM------EMVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK---DGVCVQSI 67 (563)
Q Consensus 5 ~l~s~s~DgtIrlWd~-~g-----~~i~------~l~gH~~~V~~v~~~p~g--~l~s~s~D~tvriWd---~~~~~~~l 67 (563)
.+...++|..|..+|+ +- +..+ +......+..++.|+|.= ..+.+..|+.+++.. .....+++
T Consensus 116 ~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~ 195 (1405)
T KOG3630|consen 116 VVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSF 195 (1405)
T ss_pred EEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhccc
Confidence 3455666667778887 21 0111 111223456788899864 678889999999988 33444555
Q ss_pred ecCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCC
Q 008510 68 EHPGCVWDAKFLENGD-IVTACSDGVTRIWTVHS 100 (563)
Q Consensus 68 ~h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~ 100 (563)
.....+.||+|+|.|. ++.|-..|++.-|...-
T Consensus 196 p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~l 229 (1405)
T KOG3630|consen 196 PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSL 229 (1405)
T ss_pred CcccceeeEEeccccceeeEecCCCeEEEeeccc
Confidence 5667899999999999 99999999998887643
No 414
>PHA02790 Kelch-like protein; Provisional
Probab=59.06 E-value=2e+02 Score=30.96 Aligned_cols=98 Identities=9% Similarity=0.007 Sum_probs=46.0
Q ss_pred CCCEEEEEECC--CcEEEEcCCCceeEEEec-CCCc-EEEEEEcCCC-eEEEEeCCC---cEEEEc-CCceeEEEe---c
Q 008510 2 PGVGIISASHD--CTIRLWALTGQVLMEMVG-HTAI-VYSIDSHASG-LIVSGSEDR---FAKIWK-DGVCVQSIE---H 69 (563)
Q Consensus 2 ~g~~l~s~s~D--gtIrlWd~~g~~i~~l~g-H~~~-V~~v~~~p~g-~l~s~s~D~---tvriWd-~~~~~~~l~---h 69 (563)
+|...+.||.+ .++..||........+.. .... -.+++.. +| ..+.||.++ ++-.|| ....-.... +
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~-~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~ 396 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASI-NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYY 396 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEE-CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCC
Confidence 56667777764 357777762221212111 1111 1122222 55 667777654 466777 322212221 2
Q ss_pred CCcEEEEEEccCCcE-EEEeCCCcEEEEEcCCCcee
Q 008510 70 PGCVWDAKFLENGDI-VTACSDGVTRIWTVHSDKVA 104 (563)
Q Consensus 70 ~~~V~~v~~~p~g~i-~sgs~Dg~Irvwd~~~~~~~ 104 (563)
+..-.+++ .-+|.| +.| |.+.+||.+++++.
T Consensus 397 ~r~~~~~~-~~~~~IYv~G---G~~e~ydp~~~~W~ 428 (480)
T PHA02790 397 PHYKSCAL-VFGRRLFLVG---RNAEFYCESSNTWT 428 (480)
T ss_pred ccccceEE-EECCEEEEEC---CceEEecCCCCcEe
Confidence 22112222 235664 455 35678888777654
No 415
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=58.72 E-value=1.4e+02 Score=29.12 Aligned_cols=95 Identities=11% Similarity=0.108 Sum_probs=53.1
Q ss_pred CCCEEEEEE---CCCcEEEEcCCCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc---CCcee-EEEec--CC
Q 008510 2 PGVGIISAS---HDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK---DGVCV-QSIEH--PG 71 (563)
Q Consensus 2 ~g~~l~s~s---~DgtIrlWd~~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd---~~~~~-~~l~h--~~ 71 (563)
+|+.++.-. ....+.++...+.....+.++ .+..-+|++++ ..+....+...+++. ++... ..+.. ..
T Consensus 34 dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~--~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~ 111 (253)
T PF10647_consen 34 DGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGG--SLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGLR 111 (253)
T ss_pred CCCeEEEEEEcCCCCEEEEEcCCCcceeeccCC--ccccccccCCCCEEEEEcCCCceEEEEecCCCcceeEEecccccC
Confidence 455555444 233344454444443333443 56777889998 544445566667773 33222 22221 22
Q ss_pred -cEEEEEEccCCc-EEEE---eCCCcEEEEEc
Q 008510 72 -CVWDAKFLENGD-IVTA---CSDGVTRIWTV 98 (563)
Q Consensus 72 -~V~~v~~~p~g~-i~sg---s~Dg~Irvwd~ 98 (563)
.|..+.++|||. ++.- ..++.|.|=.+
T Consensus 112 ~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V 143 (253)
T PF10647_consen 112 GRITALRVSPDGTRVAVVVEDGGGGRVYVAGV 143 (253)
T ss_pred CceEEEEECCCCcEEEEEEecCCCCeEEEEEE
Confidence 799999999998 5433 34566666554
No 416
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.58 E-value=99 Score=33.33 Aligned_cols=114 Identities=13% Similarity=0.048 Sum_probs=67.1
Q ss_pred HHHHHHHhhcCCCccHHHHHhhHHHHHHHhhhhccCCChhHHHHHHHHHHHHHhhhhhcCCchhhhHHHHHHHHhhhhcc
Q 008510 424 TGIRAVTNLFKNSSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAALEIAEEES 503 (563)
Q Consensus 424 l~lR~l~N~f~~~~~~~~~~~~~~~il~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~~~~~~~~l~~~~~~~l~~~~ 503 (563)
-+..+|.|++.+.....-+ .....++..+...+.+.+..+..=++..+-+++-.-...-.......++..+++.|. .
T Consensus 214 n~tW~LsNlcrgk~P~P~~-~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~--~ 290 (514)
T KOG0166|consen 214 NATWTLSNLCRGKNPSPPF-DVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLG--H 290 (514)
T ss_pred HHHHHHHHHHcCCCCCCcH-HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHc--C
Confidence 3677889999988543332 446778888888888888888877777776665321111111112234566667774 2
Q ss_pred cChhHHHHHHHHHhhhhc-hhHHHHHhhhcChHHHHHH
Q 008510 504 IEVDSKYRALVAIGTLML-EGLVKKIALDFDVGNIARV 540 (563)
Q Consensus 504 ~~~Ea~~R~l~AlG~l~~-~~~~~~~~~~~~~~~~~~~ 540 (563)
.+.-++-=.|.|+||++. +....+.....++-..+..
T Consensus 291 ~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ 328 (514)
T KOG0166|consen 291 SSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSN 328 (514)
T ss_pred CCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHH
Confidence 344455568999999877 3344443333333333333
No 417
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=58.07 E-value=94 Score=39.49 Aligned_cols=128 Identities=13% Similarity=0.156 Sum_probs=75.4
Q ss_pred cchHHHHHHHHHhhcCCCccHH-HHHhhHHHHHHHhhhhccCCChhHHHHHHHHHHHHHhhhhhcCCch-hhhHHHHHHH
Q 008510 419 PANLLTGIRAVTNLFKNSSWYS-WLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDEE-GQSHVLSAAL 496 (563)
Q Consensus 419 ~~~~ll~lR~l~N~f~~~~~~~-~~~~~~~~il~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~~~~-~~~~l~~~~~ 496 (563)
+..+-.++.++.|+|....... .+.. ...+..+...+.+.+..++..+|..+.|++......+... .....+..++
T Consensus 623 ~~ikk~Aa~iLsnL~a~~~d~~~avv~--agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~ 700 (2102)
T PLN03200 623 EETQEKAASVLADIFSSRQDLCESLAT--DEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLI 700 (2102)
T ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHH--cCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHH
Confidence 4556778899999998766532 2221 1223333334445566789999999999985322211111 1122455667
Q ss_pred HhhhhcccChhHHHHHHHHHhhhhchhHHHHHhhhc-ChHHHHHHHhhcCChhHHH
Q 008510 497 EIAEEESIEVDSKYRALVAIGTLMLEGLVKKIALDF-DVGNIARVAKASKETKIAE 551 (563)
Q Consensus 497 ~~l~~~~~~~Ea~~R~l~AlG~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~ 551 (563)
+++. ..|.+...=.+.||++++..++........ .+...++-++. ...+.++
T Consensus 701 ~LL~--~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~-G~~~~k~ 753 (2102)
T PLN03200 701 KLAK--SSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLRE-GTLEGKR 753 (2102)
T ss_pred HHHh--CCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHh-CChHHHH
Confidence 7774 367799999999999999966544433332 34444444443 3344444
No 418
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=56.85 E-value=47 Score=23.35 Aligned_cols=52 Identities=17% Similarity=0.101 Sum_probs=36.7
Q ss_pred hHHHHHHHHHhhcCCCccHHHHHhhHHHHHHHhhhhccCCChhHHHHHHHHHHH
Q 008510 421 NLLTGIRAVTNLFKNSSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILN 474 (563)
Q Consensus 421 ~~ll~lR~l~N~f~~~~~~~~~~~~~~~il~~~~~~~~~~~k~~~~a~atl~~N 474 (563)
.+--++++|.|+-... ...+..+...++..+...+..++..||.+++..+=|
T Consensus 3 vR~~A~~aLg~l~~~~--~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~ 54 (55)
T PF13513_consen 3 VRRAAAWALGRLAEGC--PELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGN 54 (55)
T ss_dssp HHHHHHHHHHCTTTTT--HHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhhHhccc--HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 4556788888843333 333555788899999888877788999888776644
No 419
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.51 E-value=1.4e+02 Score=33.44 Aligned_cols=42 Identities=14% Similarity=0.251 Sum_probs=28.7
Q ss_pred CCEEEEEECCCcEEEEcCCCceeEEE----ecCCCcEEEEEEcCCC
Q 008510 3 GVGIISASHDCTIRLWALTGQVLMEM----VGHTAIVYSIDSHASG 44 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~~g~~i~~l----~gH~~~V~~v~~~p~g 44 (563)
..-+++-..||++++|++-|+.+... ......|..+.+..+|
T Consensus 94 ~eeLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~G 139 (829)
T KOG2280|consen 94 DEELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNG 139 (829)
T ss_pred CceEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCc
Confidence 45688889999999999977665542 2223445555666677
No 420
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=56.51 E-value=2e+02 Score=27.95 Aligned_cols=97 Identities=9% Similarity=0.030 Sum_probs=58.3
Q ss_pred CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeE------------
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQ------------ 65 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~------------ 65 (563)
.|+.++.|.+|| +.+++. .......+. +...|..+.+.|+- .++.- .|+++.+++ .-....
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~~~llvL-sd~~l~~~~L~~l~~~~~~~~~~~~~~~~ 82 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLPELNLLLVL-SDGQLYVYDLDSLEPVSTSAPLAFPKSRS 82 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEecccCEEEEE-cCCccEEEEchhhcccccccccccccccc
Confidence 478899999999 889988 332222222 23339999999875 44433 359999999 111111
Q ss_pred ---EEecCCcEEEEE--EccCCc-EEEEeCCCcEEEEEcCCC
Q 008510 66 ---SIEHPGCVWDAK--FLENGD-IVTACSDGVTRIWTVHSD 101 (563)
Q Consensus 66 ---~l~h~~~V~~v~--~~p~g~-i~sgs~Dg~Irvwd~~~~ 101 (563)
.+.....+...+ -...+. .+.......|.+|.....
T Consensus 83 ~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~ 124 (275)
T PF00780_consen 83 LPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDP 124 (275)
T ss_pred ccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECC
Confidence 222333555555 122333 555555669999888764
No 421
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=56.30 E-value=43 Score=36.76 Aligned_cols=22 Identities=23% Similarity=0.520 Sum_probs=12.5
Q ss_pred EEEEeCCCcEEEEEcCCCceec
Q 008510 84 IVTACSDGVTRIWTVHSDKVAD 105 (563)
Q Consensus 84 i~sgs~Dg~Irvwd~~~~~~~~ 105 (563)
+++-+.|+++|+||+.++++..
T Consensus 233 l~tl~~D~~LRiW~l~t~~~~~ 254 (547)
T PF11715_consen 233 LFTLSRDHTLRIWSLETGQCLA 254 (547)
T ss_dssp EEEEETTSEEEEEETTTTCEEE
T ss_pred EEEEeCCCeEEEEECCCCeEEE
Confidence 4555666666666666555533
No 422
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=56.03 E-value=1.6e+02 Score=31.96 Aligned_cols=151 Identities=18% Similarity=0.175 Sum_probs=81.7
Q ss_pred HHHHHhcCCCCC---ccchhcHHHHhhcCCCchhhhhhcccchhhHHHHHHHhhcCCCCCc--chHHH--HHHHHHhhcC
Q 008510 362 LLKLLKTWPPAM---IFPVIDILRMTILHPDGASLLLKHVENQNDVLMEMIEKVSSNPTLP--ANLLT--GIRAVTNLFK 434 (563)
Q Consensus 362 l~~~l~~Wp~~~---~fP~lDL~Rl~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~ll--~lR~l~N~f~ 434 (563)
+.+++.....+. ..=+++++--++..+....++.+ .+.+..+...+......| ...++ .+++++|++.
T Consensus 204 l~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~-----~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~ 278 (503)
T PF10508_consen 204 LDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQ-----QGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLAR 278 (503)
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHh-----CCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHh
Confidence 334444343333 23478877777777777776642 234444444433322222 22222 3589999999
Q ss_pred CCccHHHHHhhHHHHHHHhhhhccCCChhHHHHHHHHHHHHHhhhhhcC-----CchhhhHHHHHHHHhhhhcccChhHH
Q 008510 435 NSSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKK-----DEEGQSHVLSAALEIAEEESIEVDSK 509 (563)
Q Consensus 435 ~~~~~~~~~~~~~~il~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~-----~~~~~~~l~~~~~~~l~~~~~~~Ea~ 509 (563)
. ....+......+++.+.....+.+...+.++--.+-+++....-.. ..+....++..+...+. ....|..
T Consensus 279 ~--~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~--~~~~~lk 354 (503)
T PF10508_consen 279 V--SPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIK--SGSTELK 354 (503)
T ss_pred c--ChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhc--CCchHHH
Confidence 7 2333445567788888777777777766444433335543211110 01111223444444442 3455888
Q ss_pred HHHHHHHhhhhc
Q 008510 510 YRALVAIGTLML 521 (563)
Q Consensus 510 ~R~l~AlG~l~~ 521 (563)
-|+|-||++++.
T Consensus 355 ~r~l~al~~il~ 366 (503)
T PF10508_consen 355 LRALHALASILT 366 (503)
T ss_pred HHHHHHHHHHHh
Confidence 899999999976
No 423
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=54.46 E-value=23 Score=36.35 Aligned_cols=86 Identities=5% Similarity=-0.010 Sum_probs=49.9
Q ss_pred CCcEEEEcCCCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc-CCceeEEEecCC------------------
Q 008510 12 DCTIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-DGVCVQSIEHPG------------------ 71 (563)
Q Consensus 12 DgtIrlWd~~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd-~~~~~~~l~h~~------------------ 71 (563)
.+.+.+||++...+..+......+....|+|+| .++-. .++.+.+++ .......+++.+
T Consensus 22 ~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v-~~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~ 100 (353)
T PF00930_consen 22 KGDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFV-RDNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVF 100 (353)
T ss_dssp EEEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEE-ETTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTS
T ss_pred ceeEEEEecCCCceEECcCCccccccceeecCCCeeEEE-ecCceEEEECCCCCeEEeccccceeEEcCccceecccccc
Confidence 467888999444344444335678889999999 55444 478899998 333444344221
Q ss_pred -cEEEEEEccCCc-EEEEe-CCCcEEEEEc
Q 008510 72 -CVWDAKFLENGD-IVTAC-SDGVTRIWTV 98 (563)
Q Consensus 72 -~V~~v~~~p~g~-i~sgs-~Dg~Irvwd~ 98 (563)
.-..+-|+|||+ |+... .+..|+.+.+
T Consensus 101 ~~~~~~~WSpd~~~la~~~~d~~~v~~~~~ 130 (353)
T PF00930_consen 101 DRRSAVWWSPDSKYLAFLRFDEREVPEYPL 130 (353)
T ss_dssp SSSBSEEE-TTSSEEEEEEEE-TTS-EEEE
T ss_pred ccccceEECCCCCEEEEEEECCcCCceEEe
Confidence 234677999999 66544 4455555543
No 424
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=53.87 E-value=28 Score=35.29 Aligned_cols=50 Identities=10% Similarity=0.157 Sum_probs=35.1
Q ss_pred EEEEc--CCceeEEEecCCcEEEEEEccCCc--EEEE-eCCCcEEEEEcCCCcee
Q 008510 55 AKIWK--DGVCVQSIEHPGCVWDAKFLENGD--IVTA-CSDGVTRIWTVHSDKVA 104 (563)
Q Consensus 55 vriWd--~~~~~~~l~h~~~V~~v~~~p~g~--i~sg-s~Dg~Irvwd~~~~~~~ 104 (563)
|.++| +++.+..+.....+++|+++.+.. +.+. ..++.+.+||..+++..
T Consensus 271 VWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~ 325 (342)
T PF06433_consen 271 VWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLV 325 (342)
T ss_dssp EEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EE
T ss_pred EEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEE
Confidence 44445 677777777555788999998877 4333 45789999999999844
No 425
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=53.69 E-value=30 Score=22.65 Aligned_cols=20 Identities=15% Similarity=0.242 Sum_probs=13.6
Q ss_pred CCcEEEEeCCCcEEEEEcCC
Q 008510 81 NGDIVTACSDGVTRIWTVHS 100 (563)
Q Consensus 81 ~g~i~sgs~Dg~Irvwd~~~ 100 (563)
+|.+..++.||.++.+|.++
T Consensus 21 ~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 21 GGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp TSEEEEE-TTSEEEEEETT-
T ss_pred CCEEEEEcCCCEEEEEeCCC
Confidence 45577888888888888653
No 426
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=53.68 E-value=75 Score=34.55 Aligned_cols=96 Identities=17% Similarity=0.276 Sum_probs=54.6
Q ss_pred EEEEEECCCcEEEEcC--C----CceeEEEecCC---CcE--EEEEEcCCC-eEE-EEeCCCcEEEEc----CCceeEEE
Q 008510 5 GIISASHDCTIRLWAL--T----GQVLMEMVGHT---AIV--YSIDSHASG-LIV-SGSEDRFAKIWK----DGVCVQSI 67 (563)
Q Consensus 5 ~l~s~s~DgtIrlWd~--~----g~~i~~l~gH~---~~V--~~v~~~p~g-~l~-s~s~D~tvriWd----~~~~~~~l 67 (563)
.++.-..-..|.+|.+ + ++.+..-..+- -+| ..+.|+|.. .++ -...|-+| +.+ +.+..-.+
T Consensus 74 aLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV-~~sV~~d~srVkaDi 152 (671)
T PF15390_consen 74 ALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSV-LPSVHCDSSRVKADI 152 (671)
T ss_pred ceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeE-eeeeeeCCceEEEec
Confidence 3555667788999987 2 22222111111 111 246789987 332 23444332 223 33444456
Q ss_pred ecCCcEEEEEEccCCc-E-EEEeCCCcEEEEEcCCC
Q 008510 68 EHPGCVWDAKFLENGD-I-VTACSDGVTRIWTVHSD 101 (563)
Q Consensus 68 ~h~~~V~~v~~~p~g~-i-~sgs~Dg~Irvwd~~~~ 101 (563)
...+-|.|-+|.+||. + ++.++.=.-++||-...
T Consensus 153 ~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 153 KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchh
Confidence 6778999999999998 3 44444445688886544
No 427
>PRK13684 Ycf48-like protein; Provisional
Probab=51.15 E-value=1.8e+02 Score=29.66 Aligned_cols=71 Identities=13% Similarity=0.154 Sum_probs=44.6
Q ss_pred CCcEEEEEEcCCCeEEEEeCCCcEE-EEc-CCceeEEEe--cCCcEEEEEEccCCcEEEEeCCCcEEEEEcCCCc
Q 008510 32 TAIVYSIDSHASGLIVSGSEDRFAK-IWK-DGVCVQSIE--HPGCVWDAKFLENGDIVTACSDGVTRIWTVHSDK 102 (563)
Q Consensus 32 ~~~V~~v~~~p~g~l~s~s~D~tvr-iWd-~~~~~~~l~--h~~~V~~v~~~p~g~i~sgs~Dg~Irvwd~~~~~ 102 (563)
...++++.+.|++.++..+..|.+. -++ .++.-+.+. ....+.++.+.+++.++..+..|.+++=+.+.+.
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~G~ 246 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSSRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLARGGQIRFNDPDDLE 246 (334)
T ss_pred cceEEEEEECCCCeEEEEeCCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEecCCEEEEccCCCCC
Confidence 3568889999988555555566544 344 334333333 2348999999999886556677876543344443
No 428
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=50.58 E-value=1.4e+02 Score=24.35 Aligned_cols=52 Identities=21% Similarity=0.354 Sum_probs=41.8
Q ss_pred HHHHHHHHhhcCCCccHHHHHhhHHHHHHHhhhhccCCChhHHHHHHHHHHHHHhhh
Q 008510 423 LTGIRAVTNLFKNSSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLL 479 (563)
Q Consensus 423 ll~lR~l~N~f~~~~~~~~~~~~~~~il~~~~~~~~~~~k~~~~a~atl~~N~s~~~ 479 (563)
|++|...+-..... +..++++|+..+..++...+..+|-++.-.++|++-..
T Consensus 7 li~Laa~ai~l~~~-----~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~ 58 (97)
T PF12755_consen 7 LIGLAAVAIALGKD-----ISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVA 58 (97)
T ss_pred HHHHHHHHHHchHh-----HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH
Confidence 67777777655554 56678889999988888889999999999999997553
No 429
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=49.45 E-value=29 Score=40.42 Aligned_cols=77 Identities=12% Similarity=0.065 Sum_probs=57.1
Q ss_pred EEEEECCCcEEEEcCC--CceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc-CCceeEEEe-----cCCcEEEE
Q 008510 6 IISASHDCTIRLWALT--GQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-DGVCVQSIE-----HPGCVWDA 76 (563)
Q Consensus 6 l~s~s~DgtIrlWd~~--g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd-~~~~~~~l~-----h~~~V~~v 76 (563)
++.+..|+.|++..++ ...+.++ .-+..+.|++|+|.| +++.|-..|++.=|- ..+....+. .+..|.||
T Consensus 171 ~av~l~dlsl~V~~~~~~~~~v~s~-p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v 249 (1405)
T KOG3630|consen 171 SAVDLSDLSLRVKSTKQLAQNVTSF-PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSV 249 (1405)
T ss_pred hhhhccccchhhhhhhhhhhhhccc-CcccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEE
Confidence 5667788888888772 2222232 245668999999999 899999999998888 776665554 23589999
Q ss_pred EEccCCc
Q 008510 77 KFLENGD 83 (563)
Q Consensus 77 ~~~p~g~ 83 (563)
+|..+-+
T Consensus 250 ~Wl~t~e 256 (1405)
T KOG3630|consen 250 TWLSTQE 256 (1405)
T ss_pred EEeccee
Confidence 9998877
No 430
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=49.30 E-value=69 Score=20.58 Aligned_cols=12 Identities=17% Similarity=-0.191 Sum_probs=5.6
Q ss_pred CcEEEEEEcCCC
Q 008510 33 AIVYSIDSHASG 44 (563)
Q Consensus 33 ~~V~~v~~~p~g 44 (563)
..-.+..|+|||
T Consensus 9 ~~~~~p~~SpDG 20 (39)
T PF07676_consen 9 GDDGSPAWSPDG 20 (39)
T ss_dssp SSEEEEEE-TTS
T ss_pred ccccCEEEecCC
Confidence 334455555555
No 431
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=48.58 E-value=1.1e+02 Score=30.72 Aligned_cols=102 Identities=15% Similarity=0.169 Sum_probs=58.7
Q ss_pred cchHHHHHHHHHhhcCCCccHHHHHhhHHHHHHHhhhhccCCChhHHHHHHHHHHHHH-hhhhhcCC-chhhhHHHHHHH
Q 008510 419 PANLLTGIRAVTNLFKNSSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYA-VLLIEKKD-EEGQSHVLSAAL 496 (563)
Q Consensus 419 ~~~~ll~lR~l~N~f~~~~~~~~~~~~~~~il~~~~~~~~~~~k~~~~a~atl~~N~s-~~~~~~~~-~~~~~~l~~~~~ 496 (563)
...+.-+|+.++++|.+..-...+..++.++++.+..++...+..=+ ++|.-++-+- +.+....+ ++...++...+.
T Consensus 57 ~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~-~lA~~~l~Ll~ltlg~g~~~~ei~~~~~~~L~ 135 (309)
T PF05004_consen 57 SSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQ-ALAARALALLALTLGAGEDSEEIFEELKPVLK 135 (309)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHH-HHHHHHHHHHhhhcCCCccHHHHHHHHHHHHH
Confidence 45678899999999999888888888899999999887654443333 3333333333 32221222 222222333333
Q ss_pred HhhhhcccChhHHHHHHHHHhhhhc
Q 008510 497 EIAEEESIEVDSKYRALVAIGTLML 521 (563)
Q Consensus 497 ~~l~~~~~~~Ea~~R~l~AlG~l~~ 521 (563)
.++........+.-.++.|||-+.+
T Consensus 136 ~~l~d~s~~~~~R~~~~~aLai~~f 160 (309)
T PF05004_consen 136 RILTDSSASPKARAACLEALAICTF 160 (309)
T ss_pred HHHhCCccchHHHHHHHHHHHHHHH
Confidence 4443222333443556667777655
No 432
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=47.92 E-value=3.4e+02 Score=28.22 Aligned_cols=99 Identities=15% Similarity=0.160 Sum_probs=53.2
Q ss_pred CCCEEEEE-ECCC----cEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCC-----------cEEEEc--CC
Q 008510 2 PGVGIISA-SHDC----TIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDR-----------FAKIWK--DG 61 (563)
Q Consensus 2 ~g~~l~s~-s~Dg----tIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~-----------tvriWd--~~ 61 (563)
+|+++|-+ +..| +++++|+ +|+.+..--....+ .++.|.+++ .|+-...|. .|+.|. +.
T Consensus 134 dg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~-~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~ 212 (414)
T PF02897_consen 134 DGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKF-SSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTP 212 (414)
T ss_dssp TSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEES-EEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-
T ss_pred CCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccccc-ceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCC
Confidence 45665533 4444 4999999 77665432111111 239999997 444433332 256666 22
Q ss_pred ce--eEEEe--cCCc-EEEEEEccCCc-E-EEEeCC---CcEEEEEcCCC
Q 008510 62 VC--VQSIE--HPGC-VWDAKFLENGD-I-VTACSD---GVTRIWTVHSD 101 (563)
Q Consensus 62 ~~--~~~l~--h~~~-V~~v~~~p~g~-i-~sgs~D---g~Irvwd~~~~ 101 (563)
.. .-.+. .... ...+..+++|+ + +..... ..+.+.+...+
T Consensus 213 ~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~ 262 (414)
T PF02897_consen 213 QSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG 262 (414)
T ss_dssp GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred hHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence 11 23333 2233 66788899998 3 333333 45788888764
No 433
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=47.54 E-value=4.7e+02 Score=29.68 Aligned_cols=97 Identities=14% Similarity=-0.002 Sum_probs=61.4
Q ss_pred chHHHHHHHHHhhcCCCccHHH-HHhhH---------------HHHHHHhhhhccCCChhHHHHHHHHHHHHHhhhhhcC
Q 008510 420 ANLLTGIRAVTNLFKNSSWYSW-LQKNR---------------SEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKK 483 (563)
Q Consensus 420 ~~~ll~lR~l~N~f~~~~~~~~-~~~~~---------------~~il~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~ 483 (563)
...=..++-+||.|.+.+.... |+..+ .+|+..+.-.+.+....+|+-+|-++--++..+..-.
T Consensus 755 rleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ 834 (1172)
T KOG0213|consen 755 RLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGGRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCG 834 (1172)
T ss_pred HHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhhccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhcc
Confidence 3445567888999988776553 33323 3444444444666778899999999999998877655
Q ss_pred CchhhhHHHHHHHHhhhhcccChhHHHHHHHHHhh
Q 008510 484 DEEGQSHVLSAALEIAEEESIEVDSKYRALVAIGT 518 (563)
Q Consensus 484 ~~~~~~~l~~~~~~~l~~~~~~~Ea~~R~l~AlG~ 518 (563)
.+.....|=..+-|.|. ++.+|++=-.|-||--
T Consensus 835 ee~~m~~lGvvLyEylg--eeypEvLgsILgAika 867 (1172)
T KOG0213|consen 835 EEKLMGHLGVVLYEYLG--EEYPEVLGSILGAIKA 867 (1172)
T ss_pred HHHHHHHhhHHHHHhcC--cccHHHHHHHHHHHHH
Confidence 55444444344446664 5688876555544433
No 434
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=45.93 E-value=2.1e+02 Score=29.41 Aligned_cols=98 Identities=18% Similarity=0.090 Sum_probs=53.1
Q ss_pred EEEEEECCCcEEEEcC-CCceeEEEecC--CCcEEEEEEcCCCeEEEEeCCCcEEEEc--CCceeEEEecCC--cEEEEE
Q 008510 5 GIISASHDCTIRLWAL-TGQVLMEMVGH--TAIVYSIDSHASGLIVSGSEDRFAKIWK--DGVCVQSIEHPG--CVWDAK 77 (563)
Q Consensus 5 ~l~s~s~DgtIrlWd~-~g~~i~~l~gH--~~~V~~v~~~p~g~l~s~s~D~tvriWd--~~~~~~~l~h~~--~V~~v~ 77 (563)
.+..+..||.|.-.|. +++.+.....- ...+.+=.+..+|.+..++.++.+...| +|+.+....-+. .+..-.
T Consensus 70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~~ 149 (370)
T COG1520 70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASPP 149 (370)
T ss_pred eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEecccceEEEEECCCCcEEEEEecCCCeEEecCc
Confidence 3444566776666666 55544322211 1122222222266777788888777777 677776666433 122222
Q ss_pred EccCCcEEEEeCCCcEEEEEcCCCc
Q 008510 78 FLENGDIVTACSDGVTRIWTVHSDK 102 (563)
Q Consensus 78 ~~p~g~i~sgs~Dg~Irvwd~~~~~ 102 (563)
...++.+..++.|+.+.-.+..++.
T Consensus 150 v~~~~~v~~~s~~g~~~al~~~tG~ 174 (370)
T COG1520 150 VVGDGTVYVGTDDGHLYALNADTGT 174 (370)
T ss_pred EEcCcEEEEecCCCeEEEEEccCCc
Confidence 2224445555567777777777766
No 435
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=45.74 E-value=61 Score=32.95 Aligned_cols=53 Identities=21% Similarity=0.288 Sum_probs=37.8
Q ss_pred EEEEcC-CCceeEEEecCCCcEEEEEEcCCC--eEEE-EeCCCcEEEEc--CCceeEEEe
Q 008510 15 IRLWAL-TGQVLMEMVGHTAIVYSIDSHASG--LIVS-GSEDRFAKIWK--DGVCVQSIE 68 (563)
Q Consensus 15 IrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g--~l~s-~s~D~tvriWd--~~~~~~~l~ 68 (563)
|-++|+ +++.+..+.. ...+.++.++.+. .|.+ ...++.+.+|| +|+.++++.
T Consensus 271 VWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 271 VWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp EEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred EEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence 555666 7888888874 2347799999876 5654 45689999999 899888887
No 436
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=43.81 E-value=2.1e+02 Score=36.57 Aligned_cols=71 Identities=10% Similarity=0.090 Sum_probs=46.8
Q ss_pred HHHHhhhhccCCChhHHHHHHHHHHHHHhhhhhcCCchhhhHHHHHHHHhhhhcccChhHHHHHHHHHhhhhc
Q 008510 449 ILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAALEIAEEESIEVDSKYRALVAIGTLML 521 (563)
Q Consensus 449 il~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~Ea~~R~l~AlG~l~~ 521 (563)
.++.+...+.+.++..+--++.++.||+.........-.....+..++..+. ..+.+...-...||++|..
T Consensus 610 gL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLs--s~~~~v~keAA~AL~nL~~ 680 (2102)
T PLN03200 610 ALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLT--NNTEAVATQSARALAALSR 680 (2102)
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHh--cCChHHHHHHHHHHHHHHh
Confidence 4556666677788999999999999998643332221112233444556664 3556778888889998886
No 437
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=43.70 E-value=31 Score=37.84 Aligned_cols=29 Identities=34% Similarity=0.525 Sum_probs=24.0
Q ss_pred CCEEEEEECCCcEEEEcC-CCceeEEEecC
Q 008510 3 GVGIISASHDCTIRLWAL-TGQVLMEMVGH 31 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH 31 (563)
..++++-+.|+++|+||+ +++++.+..-.
T Consensus 230 ~~~l~tl~~D~~LRiW~l~t~~~~~~~~~~ 259 (547)
T PF11715_consen 230 DTFLFTLSRDHTLRIWSLETGQCLATIDLL 259 (547)
T ss_dssp TTEEEEEETTSEEEEEETTTTCEEEEEETT
T ss_pred CCEEEEEeCCCeEEEEECCCCeEEEEeccc
Confidence 467889999999999999 88887776554
No 438
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=43.02 E-value=36 Score=36.14 Aligned_cols=55 Identities=16% Similarity=0.275 Sum_probs=29.7
Q ss_pred CeEEEEeCCCcEEEEc-CC-ceeEEEe-cCCcEEEEEEccCCc-EEEEeCCCcEEEEEcC
Q 008510 44 GLIVSGSEDRFAKIWK-DG-VCVQSIE-HPGCVWDAKFLENGD-IVTACSDGVTRIWTVH 99 (563)
Q Consensus 44 g~l~s~s~D~tvriWd-~~-~~~~~l~-h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~ 99 (563)
|+++.+|+-|-||++| -| +....+. ....|-.|..+.+|+ +++.| ...+-+-|++
T Consensus 574 GyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTC-k~yllL~d~~ 632 (776)
T COG5167 574 GYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATC-KNYLLLTDVP 632 (776)
T ss_pred ceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEee-cceEEEEecc
Confidence 3566677777777777 22 2222333 344666666777776 33333 3455555543
No 439
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=41.31 E-value=2.7e+02 Score=28.00 Aligned_cols=95 Identities=16% Similarity=0.185 Sum_probs=52.3
Q ss_pred CEEEEEECCCcEEEEcC-CCceeEEE----ecCC-CcEEEEEEcCCCeEEEEeCC----------CcEEEEc---CCcee
Q 008510 4 VGIISASHDCTIRLWAL-TGQVLMEM----VGHT-AIVYSIDSHASGLIVSGSED----------RFAKIWK---DGVCV 64 (563)
Q Consensus 4 ~~l~s~s~DgtIrlWd~-~g~~i~~l----~gH~-~~V~~v~~~p~g~l~s~s~D----------~tvriWd---~~~~~ 64 (563)
..|++|. +| +++++. ++..+..+ .+.. ..-+.+.+.|+|.+..+... ..=.+|. .+..+
T Consensus 78 g~Lv~~~-~g-~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~ 155 (307)
T COG3386 78 GRLIACE-HG-VRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVV 155 (307)
T ss_pred CeEEEEc-cc-cEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEE
Confidence 3455554 32 566665 34332222 1222 34567888999933333222 1123444 44544
Q ss_pred EEEe-cCCcEEEEEEccCCc-E-EEEeCCCcEEEEEcCC
Q 008510 65 QSIE-HPGCVWDAKFLENGD-I-VTACSDGVTRIWTVHS 100 (563)
Q Consensus 65 ~~l~-h~~~V~~v~~~p~g~-i-~sgs~Dg~Irvwd~~~ 100 (563)
+.+. +-..-..++|+|||+ + ++=+..+.|.-|++..
T Consensus 156 ~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~ 194 (307)
T COG3386 156 RLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDP 194 (307)
T ss_pred EeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCc
Confidence 4444 344667899999997 4 4445567888887763
No 440
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=40.43 E-value=2.5e+02 Score=28.22 Aligned_cols=99 Identities=16% Similarity=0.249 Sum_probs=54.5
Q ss_pred hHHHHHHHHHhhcCCCccHHHHHhh--HHHHHHHhhhh-ccCCChhHHHHHHHHHHHHHhhhhhcCCchh-hhHHHHHHH
Q 008510 421 NLLTGIRAVTNLFKNSSWYSWLQKN--RSEILDAFSSC-YSSSNKNVQLSYSTLILNYAVLLIEKKDEEG-QSHVLSAAL 496 (563)
Q Consensus 421 ~~ll~lR~l~N~f~~~~~~~~~~~~--~~~il~~~~~~-~~~~~k~~~~a~atl~~N~s~~~~~~~~~~~-~~~l~~~~~ 496 (563)
.+-+++|++.|+...+..|..+... .+.+.+.+... ....+-++|+.--+++.=|-+.+.....+.. ...++..++
T Consensus 166 ~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~ 245 (312)
T PF03224_consen 166 LQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLA 245 (312)
T ss_dssp --HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHH
T ss_pred hHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHH
Confidence 3488999999999999999998762 33333333211 1334566777777776655444433211111 111455556
Q ss_pred HhhhhcccChhHHHHH-HHHHhhhhc
Q 008510 497 EIAEEESIEVDSKYRA-LVAIGTLML 521 (563)
Q Consensus 497 ~~l~~~~~~~Ea~~R~-l~AlG~l~~ 521 (563)
+++.. ...|=+.|+ +.+|-||+.
T Consensus 246 ~i~~~--~~KEKvvRv~la~l~Nl~~ 269 (312)
T PF03224_consen 246 DILKD--SIKEKVVRVSLAILRNLLS 269 (312)
T ss_dssp HHHHH----SHHHHHHHHHHHHHTTS
T ss_pred HHHHh--cccchHHHHHHHHHHHHHh
Confidence 66642 334667777 667788887
No 441
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=40.11 E-value=4.5e+02 Score=27.33 Aligned_cols=67 Identities=13% Similarity=0.200 Sum_probs=39.5
Q ss_pred EEEEEEcCCC-eEE-EEeCC----CcEEEEc--CCceeEE-EecCCcEEEEEEccCCc-EEEEeCCC-----------cE
Q 008510 35 VYSIDSHASG-LIV-SGSED----RFAKIWK--DGVCVQS-IEHPGCVWDAKFLENGD-IVTACSDG-----------VT 93 (563)
Q Consensus 35 V~~v~~~p~g-~l~-s~s~D----~tvriWd--~~~~~~~-l~h~~~V~~v~~~p~g~-i~sgs~Dg-----------~I 93 (563)
+...+++|+| .++ +-+.. .++++.| +++.+.. +... ...++.|.++|+ ++....|. .|
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc-ccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence 3467889999 433 43333 3599999 6655432 2221 223499999988 54444332 37
Q ss_pred EEEEcCCCc
Q 008510 94 RIWTVHSDK 102 (563)
Q Consensus 94 rvwd~~~~~ 102 (563)
+.|.+.+..
T Consensus 205 ~~~~~gt~~ 213 (414)
T PF02897_consen 205 YRHKLGTPQ 213 (414)
T ss_dssp EEEETTS-G
T ss_pred EEEECCCCh
Confidence 777777664
No 442
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=39.83 E-value=51 Score=20.16 Aligned_cols=24 Identities=25% Similarity=0.266 Sum_probs=17.2
Q ss_pred CEEEEEECCCcEEEEcC-CCceeEE
Q 008510 4 VGIISASHDCTIRLWAL-TGQVLME 27 (563)
Q Consensus 4 ~~l~s~s~DgtIrlWd~-~g~~i~~ 27 (563)
..++.++.||.+...|. +|+.+.+
T Consensus 7 ~~v~~~~~~g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 7 GTVYVGSTDGTLYALDAKTGEILWT 31 (33)
T ss_pred CEEEEEcCCCEEEEEEcccCcEEEE
Confidence 35667777888888887 7776654
No 443
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=39.13 E-value=2.6e+02 Score=29.58 Aligned_cols=92 Identities=14% Similarity=0.137 Sum_probs=50.5
Q ss_pred CCCcEEEEcC-CCceeEEEecCC--CcEEEEEEcCC--C--eEEEEeCCCcEEEEc---CCc----eeEEEe-c------
Q 008510 11 HDCTIRLWAL-TGQVLMEMVGHT--AIVYSIDSHAS--G--LIVSGSEDRFAKIWK---DGV----CVQSIE-H------ 69 (563)
Q Consensus 11 ~DgtIrlWd~-~g~~i~~l~gH~--~~V~~v~~~p~--g--~l~s~s~D~tvriWd---~~~----~~~~l~-h------ 69 (563)
...++.+||+ +.+.++++.--. .....|+|..+ . -|+.|.-..+|..|- .++ .+-++. .
T Consensus 220 yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~ 299 (461)
T PF05694_consen 220 YGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWI 299 (461)
T ss_dssp S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS-
T ss_pred ccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCccc
Confidence 3468999999 788888886433 23567888654 3 466666666666664 221 111221 0
Q ss_pred -----------CCcEEEEEEccCCc-E-EEEeCCCcEEEEEcCCCc
Q 008510 70 -----------PGCVWDAKFLENGD-I-VTACSDGVTRIWTVHSDK 102 (563)
Q Consensus 70 -----------~~~V~~v~~~p~g~-i-~sgs~Dg~Irvwd~~~~~ 102 (563)
+.-|..+..+.|.+ + ++.=.+|.||.||+....
T Consensus 300 lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~ 345 (461)
T PF05694_consen 300 LPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPF 345 (461)
T ss_dssp --GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTT
T ss_pred ccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCC
Confidence 34578999999988 5 455568999999998754
No 444
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=39.02 E-value=1e+02 Score=19.80 Aligned_cols=8 Identities=0% Similarity=0.028 Sum_probs=3.7
Q ss_pred CCcEEEEc
Q 008510 52 DRFAKIWK 59 (563)
Q Consensus 52 D~tvriWd 59 (563)
+++|.++|
T Consensus 13 ~~~v~~id 20 (42)
T TIGR02276 13 SNTVSVID 20 (42)
T ss_pred CCEEEEEE
Confidence 44444444
No 445
>cd00183 TFIIS_I N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme
Probab=38.99 E-value=1.8e+02 Score=22.37 Aligned_cols=51 Identities=18% Similarity=0.193 Sum_probs=32.5
Q ss_pred ChhHHHHHHHHHhhhhchhHHHHHhhhcChHHHHHHHhhcCChhHHHHHHHHHH
Q 008510 505 EVDSKYRALVAIGTLMLEGLVKKIALDFDVGNIARVAKASKETKIAEVGADIEL 558 (563)
Q Consensus 505 ~~Ea~~R~l~AlG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ei~~ 558 (563)
+.+.+.-+|-+|..+-. -.++.+.-++.-.+.+++...+++|...|++|..
T Consensus 19 ~~~~~~~~L~~L~~~~i---t~~~L~~T~iG~~V~~Lrkh~~~~i~~~A~~Lv~ 69 (76)
T cd00183 19 EVSRLLDLLRLLKKLPL---TVEILKETRIGKKVNSLRKHSNEKIRKLAKALIK 69 (76)
T ss_pred CHHHHHHHHHHHhcCCC---CHHHHHHCCHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 55555555655555432 2334444456666888887666889999998864
No 446
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=38.88 E-value=2.3e+02 Score=28.97 Aligned_cols=80 Identities=14% Similarity=0.156 Sum_probs=50.5
Q ss_pred CEEEEEECCCcEEEEcC--CCceeEEEecCCCcEEE-EEEcCCC--eEEEEeCC--CcEEEEc---C-CceeEEEecCCc
Q 008510 4 VGIISASHDCTIRLWAL--TGQVLMEMVGHTAIVYS-IDSHASG--LIVSGSED--RFAKIWK---D-GVCVQSIEHPGC 72 (563)
Q Consensus 4 ~~l~s~s~DgtIrlWd~--~g~~i~~l~gH~~~V~~-v~~~p~g--~l~s~s~D--~tvriWd---~-~~~~~~l~h~~~ 72 (563)
.++.....||--+||-. ++...+.+....-.|.. +.+++++ ...++..+ ..-.+|. . +..++.++....
T Consensus 249 ~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~ 328 (353)
T PF00930_consen 249 EFLWISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDG 328 (353)
T ss_dssp EEEEEEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSS
T ss_pred EEEEEEEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCC
Confidence 44555557777666655 66666666655666755 5677776 55566653 3556666 5 677777874443
Q ss_pred E-EEEEEccCCc
Q 008510 73 V-WDAKFLENGD 83 (563)
Q Consensus 73 V-~~v~~~p~g~ 83 (563)
. ..+.|+|+|+
T Consensus 329 ~~~~~~~Spdg~ 340 (353)
T PF00930_consen 329 DHYSASFSPDGK 340 (353)
T ss_dssp TTEEEEE-TTSS
T ss_pred CceEEEECCCCC
Confidence 4 5999999998
No 447
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=37.87 E-value=1.3e+02 Score=33.99 Aligned_cols=56 Identities=5% Similarity=0.094 Sum_probs=40.2
Q ss_pred eEEEEeCCCcEEEEcC---------C-------------ceeEEEecCCcEEEEEEc--cCCc-EEEEeCCCcEEEEEcC
Q 008510 45 LIVSGSEDRFAKIWKD---------G-------------VCVQSIEHPGCVWDAKFL--ENGD-IVTACSDGVTRIWTVH 99 (563)
Q Consensus 45 ~l~s~s~D~tvriWd~---------~-------------~~~~~l~h~~~V~~v~~~--p~g~-i~sgs~Dg~Irvwd~~ 99 (563)
.|+.|.+||.|.+|.. . ++...+..+.++|.++++ ...+ ||+++....|.||-..
T Consensus 116 VLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~ 195 (717)
T PF08728_consen 116 VLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFA 195 (717)
T ss_pred EEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEe
Confidence 7899999999999960 1 012223356699999999 6667 7777777778887654
Q ss_pred C
Q 008510 100 S 100 (563)
Q Consensus 100 ~ 100 (563)
.
T Consensus 196 l 196 (717)
T PF08728_consen 196 L 196 (717)
T ss_pred c
Confidence 4
No 448
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=37.73 E-value=2e+02 Score=28.02 Aligned_cols=66 Identities=17% Similarity=0.188 Sum_probs=43.1
Q ss_pred CCCcEEEEEEcC------CC--eEEEEeCCCcEEEEc--CCceeEEEecCCcEEEEEEc-----cCCcEEEEeCCCcEEE
Q 008510 31 HTAIVYSIDSHA------SG--LIVSGSEDRFAKIWK--DGVCVQSIEHPGCVWDAKFL-----ENGDIVTACSDGVTRI 95 (563)
Q Consensus 31 H~~~V~~v~~~p------~g--~l~s~s~D~tvriWd--~~~~~~~l~h~~~V~~v~~~-----p~g~i~sgs~Dg~Irv 95 (563)
+...|+|++-.. ++ .++.|.|+|.|.|.| ....+..+..+.....+... -|.+|+.+|.||.|++
T Consensus 175 ~~t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~af~il~~~~lpsvPv~i~~~G~~devdyRI~Va~Rdg~iy~ 254 (257)
T PF14779_consen 175 RQTVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQAFTILKQVQLPSVPVFISVSGQYDEVDYRIVVACRDGKIYT 254 (257)
T ss_pred cCceeEEeeeecccccCCCCcceEEEEecCCeEEEECchhheeEEEEecCCCceEEEEEeeeeccceEEEEEeCCCEEEE
Confidence 455677776532 23 799999999999999 44555566644422233322 2345899999998876
Q ss_pred E
Q 008510 96 W 96 (563)
Q Consensus 96 w 96 (563)
.
T Consensus 255 i 255 (257)
T PF14779_consen 255 I 255 (257)
T ss_pred E
Confidence 3
No 449
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.86 E-value=4.4e+02 Score=26.27 Aligned_cols=46 Identities=13% Similarity=0.203 Sum_probs=29.8
Q ss_pred EEcCCC-eEEEEeCC-----CcEEEEc-CC--ceeEEEe-cCCcEEEEEEccCCcE
Q 008510 39 DSHASG-LIVSGSED-----RFAKIWK-DG--VCVQSIE-HPGCVWDAKFLENGDI 84 (563)
Q Consensus 39 ~~~p~g-~l~s~s~D-----~tvriWd-~~--~~~~~l~-h~~~V~~v~~~p~g~i 84 (563)
.|+||| .+...=.| |.|-||| +. +.+..+. |.-.-..|.+.+||+.
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrt 175 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRT 175 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcE
Confidence 578999 44443222 6688999 42 2333444 5557788999999993
No 450
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=36.41 E-value=78 Score=18.96 Aligned_cols=10 Identities=10% Similarity=0.212 Sum_probs=4.6
Q ss_pred EEEEEccCCc
Q 008510 74 WDAKFLENGD 83 (563)
Q Consensus 74 ~~v~~~p~g~ 83 (563)
+.+++.++|+
T Consensus 5 ~gvav~~~g~ 14 (28)
T PF01436_consen 5 HGVAVDSDGN 14 (28)
T ss_dssp EEEEEETTSE
T ss_pred cEEEEeCCCC
Confidence 3444444444
No 451
>PRK13616 lipoprotein LpqB; Provisional
Probab=36.06 E-value=5e+02 Score=28.84 Aligned_cols=59 Identities=15% Similarity=0.237 Sum_probs=36.5
Q ss_pred cCCCcEEEEEEcCCC-eEEEEe------CCCcEEEEc---CCceeEEEecCCcEEEEEEccCCc-EEEEeC
Q 008510 30 GHTAIVYSIDSHASG-LIVSGS------EDRFAKIWK---DGVCVQSIEHPGCVWDAKFLENGD-IVTACS 89 (563)
Q Consensus 30 gH~~~V~~v~~~p~g-~l~s~s------~D~tvriWd---~~~~~~~l~h~~~V~~v~~~p~g~-i~sgs~ 89 (563)
|....+.+.+++|+| .++..- .|..-.||- .+.. +.+......++-.|+|+|. +++.+.
T Consensus 347 g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~-~~lt~g~~~t~PsWspDG~~lw~v~d 416 (591)
T PRK13616 347 GQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVA-VQVLEGHSLTRPSWSLDADAVWVVVD 416 (591)
T ss_pred ccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcc-eeeecCCCCCCceECCCCCceEEEec
Confidence 333467889999999 444333 354445554 3443 4444333588899999987 766653
No 452
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=35.07 E-value=95 Score=28.89 Aligned_cols=100 Identities=10% Similarity=-0.028 Sum_probs=65.6
Q ss_pred chHHHHHHHHHhhcCCCccHHHHHhhHHHH--HHHhhhhccCCChhHHHHHHHHHHHHHhhhhhcC--CchhhhHHHHHH
Q 008510 420 ANLLTGIRAVTNLFKNSSWYSWLQKNRSEI--LDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKK--DEEGQSHVLSAA 495 (563)
Q Consensus 420 ~~~ll~lR~l~N~f~~~~~~~~~~~~~~~i--l~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~--~~~~~~~l~~~~ 495 (563)
.+.--..-+|+|+-+.+.||++++..-.-. +..+.....+.+..=|-.+|+.+=|.+--..... ..++.+.++..+
T Consensus 73 ~~~~yla~vl~NlS~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~L 152 (192)
T PF04063_consen 73 DNYDYLASVLANLSQLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYL 152 (192)
T ss_pred cchhHHHHHHHHhcCCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHH
Confidence 455667788999999999999998764444 6666666666666678999999999886533321 111224555555
Q ss_pred HHhhhh-cccChhHHHHHHHHHhhh
Q 008510 496 LEIAEE-ESIEVDSKYRALVAIGTL 519 (563)
Q Consensus 496 ~~~l~~-~~~~~Ea~~R~l~AlG~l 519 (563)
+--|.. ++-|+|-..++...|-.|
T Consensus 153 LlPLaGpEe~d~ee~~~lp~~LQ~L 177 (192)
T PF04063_consen 153 LLPLAGPEELDEEEMEKLPPELQLL 177 (192)
T ss_pred HhhccCCCcCCHHHHHcCCHHHhhc
Confidence 544432 455666667776666543
No 453
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=34.99 E-value=6e+02 Score=27.31 Aligned_cols=96 Identities=18% Similarity=0.159 Sum_probs=48.6
Q ss_pred EEEEEECCCcEEEEcCCCceeEEEecCCCc---EEEEEEcCCC-eEEEEe--------------CCCcEEEEc-CCceeE
Q 008510 5 GIISASHDCTIRLWALTGQVLMEMVGHTAI---VYSIDSHASG-LIVSGS--------------EDRFAKIWK-DGVCVQ 65 (563)
Q Consensus 5 ~l~s~s~DgtIrlWd~~g~~i~~l~gH~~~---V~~v~~~p~g-~l~s~s--------------~D~tvriWd-~~~~~~ 65 (563)
.|+.++. ..++.+|+.|+.+..+.--... -+++...|+| .++.+. +|. |..+| +|+.+.
T Consensus 160 ~ll~~~~-~~~~e~D~~G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~-Ivevd~tG~vv~ 237 (477)
T PF05935_consen 160 NLLIGSG-NRLYEIDLLGKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDV-IVEVDPTGEVVW 237 (477)
T ss_dssp -EEEEEB-TEEEEE-TT--EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-E-EEEE-TTS-EEE
T ss_pred CEEEecC-CceEEEcCCCCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCE-EEEECCCCCEEE
Confidence 3444443 7899999999887776543322 4577788888 555555 232 22223 444444
Q ss_pred EEe---c-----------------------C--CcEEEEEEccCC-cEEEEeC-CCcEEEEEcCCCc
Q 008510 66 SIE---H-----------------------P--GCVWDAKFLENG-DIVTACS-DGVTRIWTVHSDK 102 (563)
Q Consensus 66 ~l~---h-----------------------~--~~V~~v~~~p~g-~i~sgs~-Dg~Irvwd~~~~~ 102 (563)
.+. | . -.+.++.+.+.+ .|+..+. -..|-..|.++++
T Consensus 238 ~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~ 304 (477)
T PF05935_consen 238 EWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGK 304 (477)
T ss_dssp EEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-
T ss_pred EEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCc
Confidence 432 1 0 137899998844 4555555 4588888877776
No 454
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=34.73 E-value=2.1e+02 Score=30.93 Aligned_cols=89 Identities=10% Similarity=0.062 Sum_probs=55.4
Q ss_pred CCcchHHHHHHHHHhhcCCCccHHHHHhhHHHHHHHhhhhccCCChhHHHHHHHHHHHHHhhhhhcCCchhhhHHHHHHH
Q 008510 417 TLPANLLTGIRAVTNLFKNSSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAAL 496 (563)
Q Consensus 417 ~~~~~~ll~lR~l~N~f~~~~~~~~~~~~~~~il~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~~~~~~~~l~~~~~ 496 (563)
+++..+.++||++||+- + ..+ .+.++..+...+.+++..+|-+++..++.+.-. .++..... ++..+.
T Consensus 91 ~n~~~~~lAL~~l~~i~-~---~~~----~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~---~p~~~~~~-~~~~l~ 158 (526)
T PF01602_consen 91 PNPYIRGLALRTLSNIR-T---PEM----AEPLIPDVIKLLSDPSPYVRKKAALALLKIYRK---DPDLVEDE-LIPKLK 158 (526)
T ss_dssp SSHHHHHHHHHHHHHH--S---HHH----HHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH---CHCCHHGG-HHHHHH
T ss_pred CCHHHHHHHHhhhhhhc-c---cch----hhHHHHHHHHHhcCCchHHHHHHHHHHHHHhcc---CHHHHHHH-HHHHHh
Confidence 45678899999999965 2 212 234455555566677889999998888887543 11111111 455555
Q ss_pred HhhhhcccChhHHHHHHHHHhhh
Q 008510 497 EIAEEESIEVDSKYRALVAIGTL 519 (563)
Q Consensus 497 ~~l~~~~~~~Ea~~R~l~AlG~l 519 (563)
.++ .+.|+.++.-++.++..+
T Consensus 159 ~lL--~d~~~~V~~~a~~~l~~i 179 (526)
T PF01602_consen 159 QLL--SDKDPSVVSAALSLLSEI 179 (526)
T ss_dssp HHT--THSSHHHHHHHHHHHHHH
T ss_pred hhc--cCCcchhHHHHHHHHHHH
Confidence 666 235667776676666666
No 455
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=34.04 E-value=3.6e+02 Score=28.41 Aligned_cols=43 Identities=14% Similarity=0.050 Sum_probs=27.3
Q ss_pred EEEecCCCcEEEEEEcCCCeEEEEe-CCCcEEEEc--CCceeEEEe
Q 008510 26 MEMVGHTAIVYSIDSHASGLIVSGS-EDRFAKIWK--DGVCVQSIE 68 (563)
Q Consensus 26 ~~l~gH~~~V~~v~~~p~g~l~s~s-~D~tvriWd--~~~~~~~l~ 68 (563)
..+......+.+++.+|++.++... .=|.|.++| .+..++.++
T Consensus 301 ~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWK 346 (415)
T PF14655_consen 301 FGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWK 346 (415)
T ss_pred EeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhc
Confidence 3455555667888889988444433 337888888 555555554
No 456
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=33.73 E-value=3.2e+02 Score=29.46 Aligned_cols=31 Identities=19% Similarity=0.180 Sum_probs=25.2
Q ss_pred CCcEEEEEEccCCcEEEEeCCCcEEEEEcCC
Q 008510 70 PGCVWDAKFLENGDIVTACSDGVTRIWTVHS 100 (563)
Q Consensus 70 ~~~V~~v~~~p~g~i~sgs~Dg~Irvwd~~~ 100 (563)
.....|..-..+|.||.+|..|-||+||.-.
T Consensus 562 Kn~Fss~~tTesGyIa~as~kGDirLyDRig 592 (776)
T COG5167 562 KNKFSSGMTTESGYIAAASRKGDIRLYDRIG 592 (776)
T ss_pred cccccccccccCceEEEecCCCceeeehhhc
Confidence 3467777777888999999999999999744
No 457
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=33.31 E-value=4.9e+02 Score=25.80 Aligned_cols=90 Identities=17% Similarity=0.210 Sum_probs=53.6
Q ss_pred CcEEEEcCCCceeEEEe-cCCCcEEEEEEcCCC-eEEEEe------CCCcEEEEc-CCceeEEEe------cCCcEEEEE
Q 008510 13 CTIRLWALTGQVLMEMV-GHTAIVYSIDSHASG-LIVSGS------EDRFAKIWK-DGVCVQSIE------HPGCVWDAK 77 (563)
Q Consensus 13 gtIrlWd~~g~~i~~l~-gH~~~V~~v~~~p~g-~l~s~s------~D~tvriWd-~~~~~~~l~------h~~~V~~v~ 77 (563)
..|++||.++.....+. +-.+.|+++.|..+. .++.|. ....+-.|| .......+. .+++|..+.
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~~ 95 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTALT 95 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEEE
Confidence 35999998554443332 345789999998555 555553 456688888 554444443 246788888
Q ss_pred Ecc-CCc-E-EEEe-CCC--cEEEEEcCCCc
Q 008510 78 FLE-NGD-I-VTAC-SDG--VTRIWTVHSDK 102 (563)
Q Consensus 78 ~~p-~g~-i-~sgs-~Dg--~Irvwd~~~~~ 102 (563)
+.. ++. + +.|. .+| .|..||=.+..
T Consensus 96 ~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~ 126 (281)
T PF12768_consen 96 FISNDGSNFWVAGRSANGSTFLMKYDGSSWS 126 (281)
T ss_pred eeccCCceEEEeceecCCCceEEEEcCCceE
Confidence 754 333 4 4443 333 45666555444
No 458
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=32.34 E-value=91 Score=34.82 Aligned_cols=66 Identities=21% Similarity=0.239 Sum_probs=42.6
Q ss_pred CCcEEEEEEcCCC-eEEEEeCCCcEEEEc-CC-ce--eEEEecCCcEEEEEEccCCcEEEEeCCCcEEEEEcCC
Q 008510 32 TAIVYSIDSHASG-LIVSGSEDRFAKIWK-DG-VC--VQSIEHPGCVWDAKFLENGDIVTACSDGVTRIWTVHS 100 (563)
Q Consensus 32 ~~~V~~v~~~p~g-~l~s~s~D~tvriWd-~~-~~--~~~l~h~~~V~~v~~~p~g~i~sgs~Dg~Irvwd~~~ 100 (563)
..++.++.-+|.| .++++..||++++++ .. .. +.+... +-..+.|...| +++..+|..+--|..+.
T Consensus 14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~~~~--p~~nlv~tnhg-l~~~tsdrr~la~~~dg 84 (1636)
T KOG3616|consen 14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICEEAK--PKENLVFTNHG-LVTATSDRRALAWKEDG 84 (1636)
T ss_pred cceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhhhcC--Cccceeeeccc-eEEEeccchhheeeccC
Confidence 4567888888998 899999999999999 22 21 222222 22233333222 67777787777776543
No 459
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=32.20 E-value=2.1e+02 Score=31.24 Aligned_cols=59 Identities=15% Similarity=0.260 Sum_probs=35.4
Q ss_pred CcEEEEcC-CCceeEEEecCCCcEEEEEEcCCCeEEEEeCCCcEEEEc--CCceeEEEecCC
Q 008510 13 CTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWK--DGVCVQSIEHPG 71 (563)
Q Consensus 13 gtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g~l~s~s~D~tvriWd--~~~~~~~l~h~~ 71 (563)
|.+.-||+ +|+.+.+.........+.-....+.++.+..||.++.+| +|+.+..++...
T Consensus 441 g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g~ 502 (527)
T TIGR03075 441 GSLIAWDPITGKIVWEHKEDFPLWGGVLATAGDLVFYGTLEGYFKAFDAKTGEELWKFKTGS 502 (527)
T ss_pred eeEEEEeCCCCceeeEecCCCCCCCcceEECCcEEEEECCCCeEEEEECCCCCEeEEEeCCC
Confidence 56777887 777776654322222222112223555677788888888 888877776433
No 460
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=31.77 E-value=1.8e+02 Score=26.30 Aligned_cols=29 Identities=17% Similarity=0.244 Sum_probs=23.7
Q ss_pred cEEEEEEccCC-----c--EEEEeCCCcEEEEEcCC
Q 008510 72 CVWDAKFLENG-----D--IVTACSDGVTRIWTVHS 100 (563)
Q Consensus 72 ~V~~v~~~p~g-----~--i~sgs~Dg~Irvwd~~~ 100 (563)
.|.+++|+|.| + |++-..+|.|.+|....
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 78899999843 4 78888999999998764
No 461
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=30.91 E-value=2.4e+02 Score=21.51 Aligned_cols=47 Identities=15% Similarity=0.087 Sum_probs=32.2
Q ss_pred CCcchHHHHHHHHHhhcCCCccHHHHHhhHHHHHHHhhhhccCCChhHHHHHHHHHHHH
Q 008510 417 TLPANLLTGIRAVTNLFKNSSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNY 475 (563)
Q Consensus 417 ~~~~~~ll~lR~l~N~f~~~~~~~~~~~~~~~il~~~~~~~~~~~k~~~~a~atl~~N~ 475 (563)
..+..+..++++|+++ + ..+++..+...+.+++..+|.+++..+-.+
T Consensus 12 ~~~~vr~~a~~~L~~~-----~-------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i 58 (88)
T PF13646_consen 12 PDPQVRAEAARALGEL-----G-------DPEAIPALIELLKDEDPMVRRAAARALGRI 58 (88)
T ss_dssp SSHHHHHHHHHHHHCC-----T-------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHc-----C-------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 3456778889999833 1 123455555555678899999988887765
No 462
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=30.83 E-value=2.9e+02 Score=22.41 Aligned_cols=65 Identities=15% Similarity=0.199 Sum_probs=39.9
Q ss_pred HHHHHHHHhhhhcccChhHHHHHHHHHhhhhc--hhHHHHHhhhcChHHHHHHH---hhcCChhHHHHHHHHHHHhh
Q 008510 490 HVLSAALEIAEEESIEVDSKYRALVAIGTLML--EGLVKKIALDFDVGNIARVA---KASKETKIAEVGADIELLAK 561 (563)
Q Consensus 490 ~l~~~~~~~l~~~~~~~Ea~~R~l~AlG~l~~--~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~ei~~ll~ 561 (563)
+++..++..+ ..+|..+.|=.+-||.++.. .+++.. -+.++...+ ..-.+++++..++-+..|||
T Consensus 27 ~Il~pVL~~~--~D~d~rVRy~AcEaL~ni~k~~~~~~l~-----~f~~IF~~L~kl~~D~d~~Vr~~a~~Ld~llk 96 (97)
T PF12755_consen 27 EILPPVLKCF--DDQDSRVRYYACEALYNISKVARGEILP-----YFNEIFDALCKLSADPDENVRSAAELLDRLLK 96 (97)
T ss_pred HHHHHHHHHc--CCCcHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHcCCchhHHHHHHHHHHHhc
Confidence 4455555545 34677888888999999875 112211 133444333 33456789999988877876
No 463
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=29.86 E-value=7e+02 Score=26.47 Aligned_cols=98 Identities=11% Similarity=0.130 Sum_probs=54.2
Q ss_pred chHHHHHHHHHhhcCCCccHHHHHhhHHHHHHHhhhhccCCChhHHHHHHHHHHHHHhhhhhcCC-chhhhHHHHHHHHh
Q 008510 420 ANLLTGIRAVTNLFKNSSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKD-EEGQSHVLSAALEI 498 (563)
Q Consensus 420 ~~~ll~lR~l~N~f~~~~~~~~~~~~~~~il~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~~-~~~~~~l~~~~~~~ 498 (563)
..+-+++|++.++...+..|..+..+. .+..+...+....-++|+-.=+++.=|-+.+..... ......++..++++
T Consensus 159 ~~~~~~v~~L~~LL~~~~~R~~f~~~~--~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i 236 (429)
T cd00256 159 DYVQTAARCLQMLLRVDEYRFAFVLAD--GVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDI 236 (429)
T ss_pred chHHHHHHHHHHHhCCchHHHHHHHcc--CHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHH
Confidence 446778899999999999998876543 333333333221124454444443333332222210 01112356666666
Q ss_pred hhhcccChhHHHHHHH-HHhhhhc
Q 008510 499 AEEESIEVDSKYRALV-AIGTLML 521 (563)
Q Consensus 499 l~~~~~~~Ea~~R~l~-AlG~l~~ 521 (563)
+.. .--|=+.|+.+ .|-||+.
T Consensus 237 ~k~--s~KEKvvRv~l~~l~Nll~ 258 (429)
T cd00256 237 LKE--STKEKVIRIVLAIFRNLIS 258 (429)
T ss_pred HHh--hhhHHHHHHHHHHHHHHhh
Confidence 642 34577888776 6677776
No 464
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=29.11 E-value=1.7e+02 Score=33.20 Aligned_cols=69 Identities=19% Similarity=0.152 Sum_probs=46.7
Q ss_pred CCcEEEEEEcCCCeEEEEeCCCcEEEEc--CCceeEEEe----cCCcEEEEEEccCCcEEEEeCCCcEEEEEcCCCc
Q 008510 32 TAIVYSIDSHASGLIVSGSEDRFAKIWK--DGVCVQSIE----HPGCVWDAKFLENGDIVTACSDGVTRIWTVHSDK 102 (563)
Q Consensus 32 ~~~V~~v~~~p~g~l~s~s~D~tvriWd--~~~~~~~l~----h~~~V~~v~~~p~g~i~sgs~Dg~Irvwd~~~~~ 102 (563)
..+|.+.++..| ++-+++||.|.|+. +....+... |-..|+++.+..+|-.++-.+...++.++..+-.
T Consensus 626 ~lPvrsla~~ed--~~was~gG~V~vi~~tt~~~~~~leahqee~~~Vthm~~~~~gVwvafasG~~~rlfhtetl~ 700 (925)
T KOG3522|consen 626 SLPVRSLAFQED--FVWASEGGCVHVIPSTTFIRSWDLEAHQEEAHSVTHMLYLDNGVWVAFASGDEERLFHTETLW 700 (925)
T ss_pred Cccccchhhhhc--eeeeecCCceEEEechhccccchhHHHHhhcceEEEEEeeCCceEEEEcCCCEEEEecccccC
Confidence 456677766655 56678899999998 322222222 5568999999988876665666678888655443
No 465
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=29.02 E-value=1e+03 Score=28.27 Aligned_cols=77 Identities=17% Similarity=0.106 Sum_probs=42.6
Q ss_pred hhHHHHHHHhhhhccC-CChhHHHHHHHHHHHHHhhhhhcCCchhhhHHHHHHHHhhhhcccChhHHHHHHHHHhhhhc
Q 008510 444 KNRSEILDAFSSCYSS-SNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAALEIAEEESIEVDSKYRALVAIGTLML 521 (563)
Q Consensus 444 ~~~~~il~~~~~~~~~-~~k~~~~a~atl~~N~s~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~Ea~~R~l~AlG~l~~ 521 (563)
.|.+.+...+...+++ .|.-++..+|+.++|++.-+-+.....-.-.++...+..+. +...+-+.--.+.|||....
T Consensus 427 ~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~-~~~~~~v~e~vvtaIasvA~ 504 (1075)
T KOG2171|consen 427 KHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLL-QSSKPYVQEQAVTAIASVAD 504 (1075)
T ss_pred HHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHh-cCCchhHHHHHHHHHHHHHH
Confidence 3356666566666544 46678999999999999876554322222223332222221 23344555555666665544
No 466
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=28.98 E-value=1.5e+02 Score=31.53 Aligned_cols=55 Identities=16% Similarity=0.212 Sum_probs=42.5
Q ss_pred CcchHHHHHHHHHhhcCCCccHHHHHhhHHHHHHHhhhhccCCChhHHHHHHHHH
Q 008510 418 LPANLLTGIRAVTNLFKNSSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLI 472 (563)
Q Consensus 418 ~~~~~ll~lR~l~N~f~~~~~~~~~~~~~~~il~~~~~~~~~~~k~~~~a~atl~ 472 (563)
.++...-++++|+|+.++.++-++-++...++...+.....+...|+++..-+++
T Consensus 120 ~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d~~v~vs~l~~~ 174 (728)
T KOG4535|consen 120 SSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKDVNVRVSSLTLL 174 (728)
T ss_pred CchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHH
Confidence 3455666899999999999999988887778888777766666777777665554
No 467
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.74 E-value=2.4e+02 Score=28.09 Aligned_cols=75 Identities=17% Similarity=0.242 Sum_probs=55.4
Q ss_pred EecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEecCC--cEEEEEEccCCcE-EEEeCCCcEEEEEcCCC
Q 008510 28 MVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIEHPG--CVWDAKFLENGDI-VTACSDGVTRIWTVHSD 101 (563)
Q Consensus 28 l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~h~~--~V~~v~~~p~g~i-~sgs~Dg~Irvwd~~~~ 101 (563)
+.|-+..|.++.|+|+. .+++......-.||= +|..+.++..++ .--.+.+..+|.+ ++-=.++.+.++.+...
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 34555669999999998 666666666666775 899999998333 4567788888885 44455888999988776
Q ss_pred c
Q 008510 102 K 102 (563)
Q Consensus 102 ~ 102 (563)
.
T Consensus 161 t 161 (316)
T COG3204 161 T 161 (316)
T ss_pred c
Confidence 4
No 468
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=28.50 E-value=1e+02 Score=18.77 Aligned_cols=27 Identities=11% Similarity=0.071 Sum_probs=19.0
Q ss_pred HHHhhhhccCCChhHHHHHHHHHHHHH
Q 008510 450 LDAFSSCYSSSNKNVQLSYSTLILNYA 476 (563)
Q Consensus 450 l~~~~~~~~~~~k~~~~a~atl~~N~s 476 (563)
+..+...+..++..+|.+++..+-+++
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~ 28 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIA 28 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 445555666788899998888777765
No 469
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=27.99 E-value=3.7e+02 Score=27.65 Aligned_cols=55 Identities=15% Similarity=0.127 Sum_probs=33.0
Q ss_pred CcEEEEEEcCCC-eEEEEeCC-------------------CcEEEEc-CCceeEEEecC-CcEEEEEEccCCcEEEE
Q 008510 33 AIVYSIDSHASG-LIVSGSED-------------------RFAKIWK-DGVCVQSIEHP-GCVWDAKFLENGDIVTA 87 (563)
Q Consensus 33 ~~V~~v~~~p~g-~l~s~s~D-------------------~tvriWd-~~~~~~~l~h~-~~V~~v~~~p~g~i~sg 87 (563)
.....++|.||| ..++-+.. +.|.-++ ++..++.+... ...+.++|+|+|++.+.
T Consensus 124 ~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~t 200 (367)
T TIGR02604 124 HSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDVFFC 200 (367)
T ss_pred ccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCeEEEEecCcCCCccceECCCCCEEEE
Confidence 457789999999 44443311 2333334 55545555532 25788999999985443
No 470
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.98 E-value=6.3e+02 Score=26.91 Aligned_cols=33 Identities=12% Similarity=0.161 Sum_probs=28.6
Q ss_pred cCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCC
Q 008510 69 HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSD 101 (563)
Q Consensus 69 h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~ 101 (563)
..+.|.++.|++|.. +|.--.|.+|.+++.-..
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d 98 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPD 98 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCC
Confidence 566999999999998 788889999999998544
No 471
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=27.76 E-value=4.1e+02 Score=23.15 Aligned_cols=64 Identities=6% Similarity=-0.007 Sum_probs=41.6
Q ss_pred EEcCCC-eEEEEeCCCcEEEEc-C---------CceeEEEecCCcEEEEEEcc---C-C-cEEEEeCCCcEEEEEcCCCc
Q 008510 39 DSHASG-LIVSGSEDRFAKIWK-D---------GVCVQSIEHPGCVWDAKFLE---N-G-DIVTACSDGVTRIWTVHSDK 102 (563)
Q Consensus 39 ~~~p~g-~l~s~s~D~tvriWd-~---------~~~~~~l~h~~~V~~v~~~p---~-g-~i~sgs~Dg~Irvwd~~~~~ 102 (563)
+|.... .|+.+..-+.|.|.+ . ...++.+.....|.+++-.+ + + +++.-++...+-.||+....
T Consensus 5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~t~llaYDV~~N~ 84 (136)
T PF14781_consen 5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVENNS 84 (136)
T ss_pred EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEeccceEEEEEcccCc
Confidence 343333 567777778888887 1 12456666667788887655 2 2 35555667789999998765
No 472
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=27.21 E-value=1.6e+02 Score=27.06 Aligned_cols=55 Identities=11% Similarity=0.167 Sum_probs=42.0
Q ss_pred CcchHHHHHHHHHhhcCCCccHHHHHhhHHHHHHHhhhhccCCChhHHHHHHHHH
Q 008510 418 LPANLLTGIRAVTNLFKNSSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLI 472 (563)
Q Consensus 418 ~~~~~ll~lR~l~N~f~~~~~~~~~~~~~~~il~~~~~~~~~~~k~~~~a~atl~ 472 (563)
.++...-.+|+++.+-.+.++..+-.+....++..+...+.+.+.++|+++.+++
T Consensus 115 ~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~ 169 (182)
T PF13251_consen 115 SPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCL 169 (182)
T ss_pred ccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 3455667799999999998887776666777777777776667888888877665
No 473
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=26.79 E-value=7e+02 Score=25.49 Aligned_cols=63 Identities=14% Similarity=0.124 Sum_probs=38.7
Q ss_pred CCCeEEEEeCCCcEEEEc--CCceeEEEecC---CcEEEEEEccCCcEEEEeCCCcEEEEEcCCCcee
Q 008510 42 ASGLIVSGSEDRFAKIWK--DGVCVQSIEHP---GCVWDAKFLENGDIVTACSDGVTRIWTVHSDKVA 104 (563)
Q Consensus 42 p~g~l~s~s~D~tvriWd--~~~~~~~l~h~---~~V~~v~~~p~g~i~sgs~Dg~Irvwd~~~~~~~ 104 (563)
-+|.+..+..||.+.-.| ++..+...... ..+.+=.+..+|+|..++.++.++.+|.+++...
T Consensus 67 ~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~~g~~y~ld~~~G~~~ 134 (370)
T COG1520 67 GDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSWDGKLYALDASTGTLV 134 (370)
T ss_pred eCCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEecccceEEEEECCCCcEE
Confidence 355556667777666666 44444433321 1222222233788999999999999999877643
No 474
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.55 E-value=7.2e+02 Score=26.38 Aligned_cols=59 Identities=10% Similarity=0.034 Sum_probs=36.5
Q ss_pred ccChhHHHHHHHHHhhhhc-hhHHHHHhhhcChHHHH-HHHhh-cCChhHHHHHHHHHHHhh
Q 008510 503 SIEVDSKYRALVAIGTLML-EGLVKKIALDFDVGNIA-RVAKA-SKETKIAEVGADIELLAK 561 (563)
Q Consensus 503 ~~~~Ea~~R~l~AlG~l~~-~~~~~~~~~~~~~~~~~-~~~~~-~~~~~i~~~~~ei~~ll~ 561 (563)
.++.+.+|-.|.-+-|++. .+++.+.+-..+.-.|+ +|++. ......+.-+.||++++.
T Consensus 193 keea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaill 254 (536)
T KOG2734|consen 193 KEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILL 254 (536)
T ss_pred hhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHh
Confidence 3455667777777777776 44555444333665665 66665 344556778888888764
No 475
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=26.52 E-value=1.3e+02 Score=19.39 Aligned_cols=24 Identities=21% Similarity=0.266 Sum_probs=16.7
Q ss_pred EEEEECCCcEEEEcC-CCceeEEEe
Q 008510 6 IISASHDCTIRLWAL-TGQVLMEMV 29 (563)
Q Consensus 6 l~s~s~DgtIrlWd~-~g~~i~~l~ 29 (563)
+..++.||.|.-.|. +|+.+..++
T Consensus 3 v~~~~~~g~l~AlD~~TG~~~W~~~ 27 (38)
T PF01011_consen 3 VYVGTPDGYLYALDAKTGKVLWKFQ 27 (38)
T ss_dssp EEEETTTSEEEEEETTTTSEEEEEE
T ss_pred EEEeCCCCEEEEEECCCCCEEEeee
Confidence 444577888887787 777776654
No 476
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=26.05 E-value=6.8e+02 Score=29.36 Aligned_cols=91 Identities=16% Similarity=0.200 Sum_probs=64.3
Q ss_pred EECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc----CCceeEEEe--cCCcEEEEEEcc
Q 008510 9 ASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK----DGVCVQSIE--HPGCVWDAKFLE 80 (563)
Q Consensus 9 ~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd----~~~~~~~l~--h~~~V~~v~~~p 80 (563)
++-..+||+|++ +++.++.-..|...+..+...-.| .++.|.-=+++.+.. .|.....-+ ++.++.++.+..
T Consensus 844 A~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~ 923 (1096)
T KOG1897|consen 844 AGINQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILD 923 (1096)
T ss_pred EecCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEec
Confidence 345678999999 565777767788888888887777 788887777777766 333333333 777888888876
Q ss_pred CCcEEEEeCCCcEEEEEcC
Q 008510 81 NGDIVTACSDGVTRIWTVH 99 (563)
Q Consensus 81 ~g~i~sgs~Dg~Irvwd~~ 99 (563)
+..++-+-.+|.+.+--.+
T Consensus 924 ~d~ylgae~~gNlf~v~~d 942 (1096)
T KOG1897|consen 924 DDTYLGAENSGNLFTVRKD 942 (1096)
T ss_pred CceEEeecccccEEEEEec
Confidence 6556666667777665544
No 477
>smart00509 TFS2N Domain in the N-terminus of transcription elongation factor S-II (and elsewhere).
Probab=26.00 E-value=2.3e+02 Score=21.76 Aligned_cols=48 Identities=13% Similarity=0.145 Sum_probs=28.0
Q ss_pred HHHHHHhhhhchhHHHHHhhhcChHHHHHHHhhcCChhHHHHHHHHHH
Q 008510 511 RALVAIGTLMLEGLVKKIALDFDVGNIARVAKASKETKIAEVGADIEL 558 (563)
Q Consensus 511 R~l~AlG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ei~~ 558 (563)
|++-+|..|-.-+--.++.+.-.+.-.+.+++...++.|...|++|..
T Consensus 20 ~~l~~L~~L~~~~~t~~~L~~T~iG~~v~~Lrkh~~~~I~~~A~~Li~ 67 (75)
T smart00509 20 RCLDILKKLKKLPITVDLLEETRIGKKVNGLRKHKNEEIRKLAKKLIK 67 (75)
T ss_pred HHHHHHHHHhcCCCCHHHHHHCcHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 444444444432222333333345556778877667789999988865
No 478
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=25.56 E-value=8.3e+02 Score=25.92 Aligned_cols=118 Identities=11% Similarity=0.050 Sum_probs=71.0
Q ss_pred chHHHHHHHHHhhcCCCccHHHHHhh--HHHHHHHhhhh-ccCCChhHHHHHHHHHHHHHhhhhhcCCchhhhHHHHHHH
Q 008510 420 ANLLTGIRAVTNLFKNSSWYSWLQKN--RSEILDAFSSC-YSSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAAL 496 (563)
Q Consensus 420 ~~~ll~lR~l~N~f~~~~~~~~~~~~--~~~il~~~~~~-~~~~~k~~~~a~atl~~N~s~~~~~~~~~~~~~~l~~~~~ 496 (563)
....+..=++.|.-.+......+... .+.+++.+..- .-..|-.+|-|+-+.+=|+.+=-.++... ...-+..+++
T Consensus 330 ~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nka~~-~~aGvteaIL 408 (604)
T KOG4500|consen 330 NLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSNKAHF-APAGVTEAIL 408 (604)
T ss_pred hHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCchhhc-cccchHHHHH
Confidence 34566777889999888877766653 45555555432 22235567889999999998764443321 1222334445
Q ss_pred HhhhhcccChhHHHHHHHHHhhhhchh--HHHHHhhhcChHHHHHHHhh
Q 008510 497 EIAEEESIEVDSKYRALVAIGTLMLEG--LVKKIALDFDVGNIARVAKA 543 (563)
Q Consensus 497 ~~l~~~~~~~Ea~~R~l~AlG~l~~~~--~~~~~~~~~~~~~~~~~~~~ 543 (563)
-.+ +...|-..|.+|-.+-.++-.. -+.++++ -++.++++..
T Consensus 409 ~~l--k~~~ppv~fkllgTlrM~~d~qe~~a~eL~k---n~~l~ekLv~ 452 (604)
T KOG4500|consen 409 LQL--KLASPPVTFKLLGTLRMIRDSQEYIACELAK---NPELFEKLVD 452 (604)
T ss_pred HHH--HhcCCcchHHHHHHHHHHHhchHHHHHHHhc---CHHHHHHHHH
Confidence 555 3457788999887776665422 3444444 3455666654
No 479
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=25.12 E-value=7.8e+02 Score=25.45 Aligned_cols=142 Identities=15% Similarity=0.141 Sum_probs=0.0
Q ss_pred CCCEEEEEEC---CCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC--eEEEEeCCCcEEEEc-CCceeEE------Ee
Q 008510 2 PGVGIISASH---DCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK-DGVCVQS------IE 68 (563)
Q Consensus 2 ~g~~l~s~s~---DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g--~l~s~s~D~tvriWd-~~~~~~~------l~ 68 (563)
++..+..+.. ++++-+-|. +++.+.+...-..+ ..+++.|+| ..++-..++++.+.| +...+.. +.
T Consensus 126 ~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~ 204 (381)
T COG3391 126 DGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVG 204 (381)
T ss_pred CCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccc
Q ss_pred cCCcEEEEEEccCCc-EEEEeCCC---cEEEEEcCCCceeceeeecccccccceeEEeeccCCceEEEeCCCCc--eeee
Q 008510 69 HPGCVWDAKFLENGD-IVTACSDG---VTRIWTVHSDKVADSLELEAYASELSQYKLCRKKVGGLKLEDLPGLE--ALQI 142 (563)
Q Consensus 69 h~~~V~~v~~~p~g~-i~sgs~Dg---~Irvwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~d~~~~~--~l~~ 142 (563)
....-+.+.+.|+|. +....... .+.+.|..++. +..++.+... ....
T Consensus 205 ~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~--------------------------v~~~~~~~~~~~~~~v 258 (381)
T COG3391 205 VGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGN--------------------------VTATDLPVGSGAPRGV 258 (381)
T ss_pred cCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCce--------------------------EEEeccccccCCCCce
Q ss_pred cccCCCeEEEEecCCCeEEEEEecccce
Q 008510 143 PGTNAGQTKVVREGDNGVAYSWDMKEQK 170 (563)
Q Consensus 143 ~g~~dg~~~l~~~~~~~~~~~wd~~~~~ 170 (563)
..+++|....+.......++.-|..+..
T Consensus 259 ~~~p~g~~~yv~~~~~~~V~vid~~~~~ 286 (381)
T COG3391 259 AVDPAGKAAYVANSQGGTVSVIDGATDR 286 (381)
T ss_pred eECCCCCEEEEEecCCCeEEEEeCCCCc
No 480
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.06 E-value=3.2e+02 Score=29.61 Aligned_cols=103 Identities=17% Similarity=0.182 Sum_probs=60.4
Q ss_pred chHHHHHHHHHhhcCCCcc--HHHHHhhHHHHHHHhhhhcc-CCChhHHHHHHHHHHHHHhhhhhcCC---chhhhHHHH
Q 008510 420 ANLLTGIRAVTNLFKNSSW--YSWLQKNRSEILDAFSSCYS-SSNKNVQLSYSTLILNYAVLLIEKKD---EEGQSHVLS 493 (563)
Q Consensus 420 ~~~ll~lR~l~N~f~~~~~--~~~~~~~~~~il~~~~~~~~-~~~k~~~~a~atl~~N~s~~~~~~~~---~~~~~~l~~ 493 (563)
..++.+.+.+.=+++.... ...+.. .-++..+..++. ..+..+|..+|-.+-|+|.-...... +.+.+.+
T Consensus 81 ~~q~~a~~~~rkllS~~~~ppi~~vi~--~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~-- 156 (514)
T KOG0166|consen 81 QQQLTATQAFRKLLSKERNPPIDEVIQ--SGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPI-- 156 (514)
T ss_pred HHHHHHHHHHHHHHccCCCCCHHHHHH--cCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHH--
Confidence 3344444444444444332 222222 255666666654 45688999999999999975444321 2223222
Q ss_pred HHHHhhhhcccChhHHHHHHHHHhhhhc-hhHHHHHh
Q 008510 494 AALEIAEEESIEVDSKYRALVAIGTLML-EGLVKKIA 529 (563)
Q Consensus 494 ~~~~~l~~~~~~~Ea~~R~l~AlG~l~~-~~~~~~~~ 529 (563)
++..+. ..+.+..-...-||||++. ++..++.+
T Consensus 157 -fi~Ll~--s~~~~v~eQavWALgNIagds~~~Rd~v 190 (514)
T KOG0166|consen 157 -FIQLLS--SPSADVREQAVWALGNIAGDSPDCRDYV 190 (514)
T ss_pred -HHHHhc--CCcHHHHHHHHHHHhccccCChHHHHHH
Confidence 345553 4567888899999999998 33444433
No 481
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=24.51 E-value=1.3e+02 Score=19.54 Aligned_cols=27 Identities=19% Similarity=0.121 Sum_probs=20.5
Q ss_pred HHHhhhhccCCChhHHHHHHHHHHHHH
Q 008510 450 LDAFSSCYSSSNKNVQLSYSTLILNYA 476 (563)
Q Consensus 450 l~~~~~~~~~~~k~~~~a~atl~~N~s 476 (563)
+..+...+.+.+..+|-.++..+-|++
T Consensus 14 i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 14 IPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 334444555788999999999999987
No 482
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=24.48 E-value=3e+02 Score=21.88 Aligned_cols=29 Identities=7% Similarity=0.068 Sum_probs=20.8
Q ss_pred cEEEEEEccCCc--EEEEeCCCcEEEEEcCC
Q 008510 72 CVWDAKFLENGD--IVTACSDGVTRIWTVHS 100 (563)
Q Consensus 72 ~V~~v~~~p~g~--i~sgs~Dg~Irvwd~~~ 100 (563)
.-..|.++|+++ .++....+.|++|..+.
T Consensus 55 ~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~ 85 (86)
T PF01731_consen 55 FANGIAISPDKKYLYVASSLAHSIHVYKRHK 85 (86)
T ss_pred CCceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence 455677888877 35666778888887653
No 483
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=24.43 E-value=5.9e+02 Score=23.79 Aligned_cols=91 Identities=8% Similarity=-0.019 Sum_probs=47.9
Q ss_pred hHHHHHHHHHhhcCCCccHHHHHhhHHHHHHHhhhhccCCChhHHHHHHHHHHHHHhhhhhcCCchhhhHH-HHHHHHhh
Q 008510 421 NLLTGIRAVTNLFKNSSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHV-LSAALEIA 499 (563)
Q Consensus 421 ~~ll~lR~l~N~f~~~~~~~~~~~~~~~il~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~~~~~~~~l-~~~~~~~l 499 (563)
....++.++..+|.+-... +-.+.+.++..+...+...++.++.++...+..+.-...- ...+ ...+....
T Consensus 69 v~~~A~~~l~~l~~~l~~~--~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~------~~~~~~~~l~~~~ 140 (228)
T PF12348_consen 69 VSKTACQLLSDLARQLGSH--FEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSY------SPKILLEILSQGL 140 (228)
T ss_dssp HHHHHHHHHHHHHHHHGGG--GHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--------HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhHh--HHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCc------HHHHHHHHHHHHH
Confidence 3455666666666443322 3344566777776666667888888888877776654330 0112 22222222
Q ss_pred hhcccChhHHHHHHHHHhhhhc
Q 008510 500 EEESIEVDSKYRALVAIGTLML 521 (563)
Q Consensus 500 ~~~~~~~Ea~~R~l~AlG~l~~ 521 (563)
...++....+++..+..++.
T Consensus 141 --~~Kn~~vR~~~~~~l~~~l~ 160 (228)
T PF12348_consen 141 --KSKNPQVREECAEWLAIILE 160 (228)
T ss_dssp --T-S-HHHHHHHHHHHHHHHT
T ss_pred --hCCCHHHHHHHHHHHHHHHH
Confidence 33556666667766766665
No 484
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=22.98 E-value=21 Score=37.65 Aligned_cols=90 Identities=12% Similarity=0.142 Sum_probs=59.4
Q ss_pred EEEECCCcEEEEcCCCceeEEEe--c-CCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEEEEEc
Q 008510 7 ISASHDCTIRLWALTGQVLMEMV--G-HTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDAKFL 79 (563)
Q Consensus 7 ~s~s~DgtIrlWd~~g~~i~~l~--g-H~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~v~~~ 79 (563)
+-+-..+.+.+|++..+-..+++ | |+... ..|++.+ .++.+-..+.++|++ ..+.+-... |...+.++++.
T Consensus 91 vlAek~~piylwd~n~eytqqLE~gg~~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~ 168 (615)
T KOG2247|consen 91 VLAEKTGPIYLWDVNSEYTQQLESGGTSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVT 168 (615)
T ss_pred hhhhcCCCeeechhhhhhHHHHhccCcchHHH--HhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEec
Confidence 33455678999998433222222 2 33222 5677776 777887889999999 333333344 88899999999
Q ss_pred cCCcEEEEeCCCcEEEEEc
Q 008510 80 ENGDIVTACSDGVTRIWTV 98 (563)
Q Consensus 80 p~g~i~sgs~Dg~Irvwd~ 98 (563)
+.+..+.++.|..+.+-..
T Consensus 169 lEd~vil~dcd~~L~v~~q 187 (615)
T KOG2247|consen 169 LEDYVILCDCDNTLSVTTQ 187 (615)
T ss_pred ccceeeecCcHHHHHHhhh
Confidence 9988777777766555443
No 485
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=22.28 E-value=7.9e+02 Score=26.45 Aligned_cols=95 Identities=21% Similarity=0.302 Sum_probs=56.5
Q ss_pred CCCEEEEEECCCcEEEEcC--CC-ceeEEEecC-CCcEEEEEEcCCC--eEEEEeCCCcEEEEc----CCceeEEEecCC
Q 008510 2 PGVGIISASHDCTIRLWAL--TG-QVLMEMVGH-TAIVYSIDSHASG--LIVSGSEDRFAKIWK----DGVCVQSIEHPG 71 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~--~g-~~i~~l~gH-~~~V~~v~~~p~g--~l~s~s~D~tvriWd----~~~~~~~l~h~~ 71 (563)
++..++-+..||.+..-.+ ++ ....+.-|. .....++++..+| .++.||+-|.=.++. .-++++++.--+
T Consensus 221 ~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~N~~ 300 (504)
T PF10433_consen 221 DGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLPNWG 300 (504)
T ss_dssp TSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE----
T ss_pred CCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEeccCcC
Confidence 4567888999999888877 34 223333344 5556778888888 888888877655554 345566666556
Q ss_pred cEEEEEEcc-----CC------cEEEEe---CCCcEEEE
Q 008510 72 CVWDAKFLE-----NG------DIVTAC---SDGVTRIW 96 (563)
Q Consensus 72 ~V~~v~~~p-----~g------~i~sgs---~Dg~Irvw 96 (563)
+|.++++.+ .. +|+++| .+|.+++.
T Consensus 301 Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~l 339 (504)
T PF10433_consen 301 PIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRIL 339 (504)
T ss_dssp SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEE
T ss_pred CccceEEeccccCCCCcccccceEEEEECcCCCCcEEEE
Confidence 899888863 12 544443 35677775
No 486
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=22.15 E-value=29 Score=36.61 Aligned_cols=67 Identities=18% Similarity=0.302 Sum_probs=52.3
Q ss_pred EEEEEcCCC-eEEEEeCCCcEEEEc-CCceeEEEecCCcEEEEEEccCCc--EEEEeCCCcEEEEEcCCCc
Q 008510 36 YSIDSHASG-LIVSGSEDRFAKIWK-DGVCVQSIEHPGCVWDAKFLENGD--IVTACSDGVTRIWTVHSDK 102 (563)
Q Consensus 36 ~~v~~~p~g-~l~s~s~D~tvriWd-~~~~~~~l~h~~~V~~v~~~p~g~--i~sgs~Dg~Irvwd~~~~~ 102 (563)
-...|-|.+ .++.++.+-.|..+| .++.+-.+..++..-.++|..+|+ .+.+-..+.+.+||+.+..
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD~agq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~ey 108 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYDKAGQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEY 108 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhhhhcceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhh
Confidence 345677777 788888899999999 777666666778888889988888 4555667899999998765
No 487
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=21.93 E-value=1.7e+02 Score=23.42 Aligned_cols=33 Identities=0% Similarity=-0.074 Sum_probs=14.4
Q ss_pred CCcEEEEcCCCceeEEEecCCCcEEEEEEcCCC
Q 008510 12 DCTIRLWALTGQVLMEMVGHTAIVYSIDSHASG 44 (563)
Q Consensus 12 DgtIrlWd~~g~~i~~l~gH~~~V~~v~~~p~g 44 (563)
+|.+..||...+....+..--.+-..|++++|+
T Consensus 36 ~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~ 68 (89)
T PF03088_consen 36 TGRLLRYDPSTKETTVLLDGLYFPNGVALSPDE 68 (89)
T ss_dssp -EEEEEEETTTTEEEEEEEEESSEEEEEE-TTS
T ss_pred CcCEEEEECCCCeEEEehhCCCccCeEEEcCCC
Confidence 344555555333333333333455666666665
No 488
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=21.47 E-value=1.5e+02 Score=28.66 Aligned_cols=57 Identities=18% Similarity=0.271 Sum_probs=33.9
Q ss_pred cEEEEEEcCCC-eEEEEeC-C--CcEEEEc-CC---ceeE-----EEecCCcEEEEEEccCCc-EEEEeCC
Q 008510 34 IVYSIDSHASG-LIVSGSE-D--RFAKIWK-DG---VCVQ-----SIEHPGCVWDAKFLENGD-IVTACSD 90 (563)
Q Consensus 34 ~V~~v~~~p~g-~l~s~s~-D--~tvriWd-~~---~~~~-----~l~h~~~V~~v~~~p~g~-i~sgs~D 90 (563)
+..+=.+.+|| .+.+||. | +.+|+++ .. .|-. .+..+..=-++...|||+ |+.|+.+
T Consensus 68 FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~DG~vlIvGG~~ 138 (243)
T PF07250_consen 68 FCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPDGRVLIVGGSN 138 (243)
T ss_pred cccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECCCCCEEEEeCcC
Confidence 33444567888 6666654 2 4588888 22 2221 123444555677788999 6777766
No 489
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=20.90 E-value=9.1e+02 Score=25.40 Aligned_cols=91 Identities=18% Similarity=0.265 Sum_probs=49.0
Q ss_pred HHHHhc-CCCCCccchhcHHHHhhcCCCchhhhhhcccchhhHHHHHHHhhcC-CCCCc-----chHHHHHHHHHhhcCC
Q 008510 363 LKLLKT-WPPAMIFPVIDILRMTILHPDGASLLLKHVENQNDVLMEMIEKVSS-NPTLP-----ANLLTGIRAVTNLFKN 435 (563)
Q Consensus 363 ~~~l~~-Wp~~~~fP~lDL~Rl~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~-----~~~ll~lR~l~N~f~~ 435 (563)
.+++.+ -|..++.-.|.-+|++.++...=.-+. .+..-+.+..+ ..+.. +.+.| ...|=++++|||+.-|
T Consensus 51 ~~Vle~~~p~t~~v~~LetvrILSRdk~~L~~~~--~~q~~~~ll~~-A~ls~~e~sl~~v~d~~vi~EslKCLcNlvf~ 127 (532)
T KOG4464|consen 51 FEVLENGEPLTHRVVCLETVRILSRDKDGLEPLT--NDQLCQKLLAL-AELSSNENSLPTVADMHVIMESLKCLCNLVFH 127 (532)
T ss_pred HHHHhcCCCchhhhhHHHHHHHHhcccccccccc--chHHHHHHHHH-HHhccccCCCCcccchHHHHHHHHHHHHHHhc
Confidence 344433 567777788999999998777544332 11111122222 22221 11122 4568899999999777
Q ss_pred CccHHH-HHhh--HHHHHHHhhhh
Q 008510 436 SSWYSW-LQKN--RSEILDAFSSC 456 (563)
Q Consensus 436 ~~~~~~-~~~~--~~~il~~~~~~ 456 (563)
+.-.+. .+.. ..+++..+...
T Consensus 128 Sq~~q~~~~~~~~~~~ll~~v~~~ 151 (532)
T KOG4464|consen 128 SQRAQDLFLENPLTGKLLQRVLGE 151 (532)
T ss_pred cHHHHHHHHhhhhHHHHHHHHHHH
Confidence 665443 3322 34555555433
No 490
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=20.43 E-value=9.2e+02 Score=24.66 Aligned_cols=68 Identities=18% Similarity=0.089 Sum_probs=36.7
Q ss_pred HHHHHHhhhhcccChhHHHHHHHHHhhhhc-h-hHHHHHhhhcChHHHHHHHhh-cCChhHHHHHHHHHHHh
Q 008510 492 LSAALEIAEEESIEVDSKYRALVAIGTLML-E-GLVKKIALDFDVGNIARVAKA-SKETKIAEVGADIELLA 560 (563)
Q Consensus 492 ~~~~~~~l~~~~~~~Ea~~R~l~AlG~l~~-~-~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~ei~~ll 560 (563)
+..++.++.. ..+.++.--.|-|++.|+. . +...+..+.-|...+...+.. ..+.|++-.+-.+.+.|
T Consensus 168 L~~Ll~~ls~-~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~L 238 (342)
T KOG2160|consen 168 LSKLLKILSS-DDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLL 238 (342)
T ss_pred HHHHHHHHcc-CCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHH
Confidence 5566666653 3455666888999999988 2 233333333344333344443 24555555555554433
No 491
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.37 E-value=7.4e+02 Score=29.43 Aligned_cols=103 Identities=18% Similarity=0.205 Sum_probs=61.2
Q ss_pred CCcchHHHHHHHHHhhcCCCccHHHHHhhHHHHHHHhhhhccCCChhHHHHHHHHHHHHHhhhh-hcCCchhhhHHHHHH
Q 008510 417 TLPANLLTGIRAVTNLFKNSSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLI-EKKDEEGQSHVLSAA 495 (563)
Q Consensus 417 ~~~~~~ll~lR~l~N~f~~~~~~~~~~~~~~~il~~~~~~~~~~~k~~~~a~atl~~N~s~~~~-~~~~~~~~~~l~~~~ 495 (563)
..+..+=+++|+|.++-..-... ...|...++..+..+...+..++|++++..+--++.++- ++..-.-...++..+
T Consensus 130 ~~~~~rE~al~il~s~~~~~~~~--~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~ 207 (1075)
T KOG2171|consen 130 PNPSLRESALLILSSLPETFGNT--LQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSL 207 (1075)
T ss_pred CCcchhHHHHHHHHhhhhhhccc--cchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHH
Confidence 34566777888887654332221 234567778888888776666799999999988888774 211111122334434
Q ss_pred HHhhhh--cccChhHHHHHHHHHhhhhc
Q 008510 496 LEIAEE--ESIEVDSKYRALVAIGTLML 521 (563)
Q Consensus 496 ~~~l~~--~~~~~Ea~~R~l~AlG~l~~ 521 (563)
+.++.. ...|.++.--.|-+|-.|+-
T Consensus 208 l~vl~~~i~~~d~~~a~~~l~~l~El~e 235 (1075)
T KOG2171|consen 208 LNVLQEVIQDGDDDAAKSALEALIELLE 235 (1075)
T ss_pred HHHhHhhhhccchHHHHHHHHHHHHHHh
Confidence 433322 33455666666666666655
Done!