Query 008510
Match_columns 563
No_of_seqs 346 out of 2994
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 05:15:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008510.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008510hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pst_A Protein DOA1; protein d 100.0 9.7E-71 3.3E-75 556.2 26.3 373 133-556 33-424 (425)
2 3l3f_X Protein DOA1, DOA1/UFD3 100.0 6.6E-67 2.3E-71 521.5 25.7 343 163-556 1-361 (362)
3 3ebb_A Phospholipase A2-activa 100.0 1.8E-57 6.3E-62 450.2 24.4 283 257-560 19-304 (304)
4 3gae_A Protein DOA1; UFD3, CDC 100.0 3.3E-43 1.1E-47 339.8 17.9 234 287-556 2-252 (253)
5 4gqb_B Methylosome protein 50; 99.9 5.1E-24 1.8E-28 218.0 22.2 207 2-225 92-331 (344)
6 2ynn_A Coatomer subunit beta'; 99.9 1.7E-22 6E-27 202.5 25.9 205 2-224 24-258 (304)
7 1vyh_C Platelet-activating fac 99.9 1.4E-22 4.7E-27 212.3 24.2 204 2-224 119-368 (410)
8 1vyh_C Platelet-activating fac 99.9 2.5E-22 8.6E-27 210.3 23.8 203 2-223 161-409 (410)
9 3frx_A Guanine nucleotide-bind 99.9 1.6E-21 5.6E-26 196.9 25.8 211 2-224 76-316 (319)
10 1got_B GT-beta; complex (GTP-b 99.9 3E-21 1E-25 196.7 25.4 202 2-222 108-340 (340)
11 3ow8_A WD repeat-containing pr 99.9 3.9E-21 1.3E-25 194.5 25.3 203 2-223 91-319 (321)
12 2hes_X YDR267CP; beta-propelle 99.9 2.1E-21 7.2E-26 197.1 22.4 212 2-225 69-328 (330)
13 4g56_B MGC81050 protein; prote 99.9 8.2E-22 2.8E-26 202.5 19.3 207 3-226 105-344 (357)
14 2xzm_R RACK1; ribosome, transl 99.9 5.1E-21 1.7E-25 195.2 24.4 220 2-224 38-339 (343)
15 2pm7_B Protein transport prote 99.9 4.1E-21 1.4E-25 191.9 23.1 217 2-224 20-284 (297)
16 3fm0_A Protein CIAO1; WDR39,SG 99.9 2.2E-21 7.6E-26 198.2 21.0 217 2-226 72-336 (345)
17 2pbi_B Guanine nucleotide-bind 99.9 9.7E-21 3.3E-25 194.2 25.3 202 2-222 75-354 (354)
18 3ow8_A WD repeat-containing pr 99.9 5.8E-21 2E-25 193.2 23.0 205 2-225 47-279 (321)
19 1erj_A Transcriptional repress 99.9 1.2E-20 4.1E-25 196.3 25.4 206 2-224 134-388 (393)
20 3bg1_A Protein SEC13 homolog; 99.9 8.1E-21 2.8E-25 191.5 21.4 211 2-224 24-292 (316)
21 2ynn_A Coatomer subunit beta'; 99.9 1.6E-20 5.4E-25 188.2 23.4 204 2-223 66-300 (304)
22 4ery_A WD repeat-containing pr 99.9 5.7E-20 1.9E-24 184.3 26.6 204 2-223 76-310 (312)
23 4ery_A WD repeat-containing pr 99.9 1.1E-19 3.7E-24 182.2 26.4 206 2-225 34-268 (312)
24 3frx_A Guanine nucleotide-bind 99.9 5.8E-20 2E-24 185.5 24.0 201 3-225 30-267 (319)
25 3iz6_a 40S ribosomal protein R 99.9 2.6E-20 8.9E-25 192.8 21.8 58 2-59 77-136 (380)
26 1nr0_A Actin interacting prote 99.9 7.9E-20 2.7E-24 201.4 26.7 100 5-104 162-274 (611)
27 3vl1_A 26S proteasome regulato 99.8 6.1E-20 2.1E-24 191.5 22.9 209 2-225 108-365 (420)
28 3fm0_A Protein CIAO1; WDR39,SG 99.8 5.7E-20 1.9E-24 187.7 21.7 185 2-223 27-223 (345)
29 1erj_A Transcriptional repress 99.8 1.1E-19 3.8E-24 189.0 23.4 217 2-224 75-340 (393)
30 1got_B GT-beta; complex (GTP-b 99.8 2.3E-19 7.9E-24 182.7 25.3 206 2-224 66-300 (340)
31 4gqb_B Methylosome protein 50; 99.8 1.9E-19 6.4E-24 184.0 24.0 154 2-157 138-310 (344)
32 3k26_A Polycomb protein EED; W 99.8 1.1E-19 3.8E-24 185.0 21.4 210 3-224 85-365 (366)
33 2k89_A PLA2P, PLAP, phospholip 99.8 3.7E-21 1.3E-25 145.5 7.5 70 185-254 6-75 (80)
34 2ymu_A WD-40 repeat protein; u 99.8 2.2E-19 7.4E-24 195.5 24.5 200 2-222 355-577 (577)
35 3dm0_A Maltose-binding peripla 99.8 2.9E-19 9.8E-24 199.8 25.6 217 2-224 441-692 (694)
36 3mmy_A MRNA export factor; mRN 99.8 1.2E-18 3.9E-23 177.4 26.4 205 2-223 53-344 (368)
37 2hes_X YDR267CP; beta-propelle 99.8 4.7E-19 1.6E-23 179.7 22.4 209 3-224 24-279 (330)
38 4g56_B MGC81050 protein; prote 99.8 2.1E-19 7.2E-24 184.5 19.7 205 2-224 53-300 (357)
39 1nr0_A Actin interacting prote 99.8 4.3E-19 1.5E-23 195.5 23.5 220 2-225 70-355 (611)
40 2j04_B YDR362CP, TAU91; beta p 99.8 2.2E-19 7.6E-24 193.6 19.8 205 3-225 173-428 (524)
41 2pbi_B Guanine nucleotide-bind 99.8 9.6E-19 3.3E-23 179.3 23.1 156 2-157 165-337 (354)
42 3jrp_A Fusion protein of prote 99.8 7.7E-19 2.6E-23 179.6 21.2 210 2-224 22-286 (379)
43 3zwl_B Eukaryotic translation 99.8 3.8E-18 1.3E-22 173.6 26.0 225 2-228 43-349 (369)
44 4gga_A P55CDC, cell division c 99.8 2.5E-18 8.7E-23 180.2 24.4 206 2-224 158-394 (420)
45 3f3f_A Nucleoporin SEH1; struc 99.8 3.6E-18 1.2E-22 171.7 24.6 221 2-224 22-336 (351)
46 2ymu_A WD-40 repeat protein; u 99.8 2.6E-18 8.7E-23 187.0 25.0 201 2-223 314-537 (577)
47 3v7d_B Cell division control p 99.8 2.5E-18 8.6E-23 182.1 24.3 206 2-225 131-381 (464)
48 4gq1_A NUP37; propeller, trans 99.8 1.5E-18 5.2E-23 180.4 20.8 198 3-216 101-381 (393)
49 3dm0_A Maltose-binding peripla 99.8 4.3E-18 1.5E-22 190.3 25.7 204 3-225 395-632 (694)
50 4e54_B DNA damage-binding prot 99.8 5.1E-19 1.7E-23 186.5 16.1 209 2-226 176-431 (435)
51 1gxr_A ESG1, transducin-like e 99.8 1.2E-17 4.3E-22 167.7 25.4 204 2-223 108-335 (337)
52 3dwl_C Actin-related protein 2 99.8 4.9E-19 1.7E-23 182.0 15.2 209 2-224 22-280 (377)
53 4aow_A Guanine nucleotide-bind 99.8 1E-17 3.5E-22 168.9 24.4 219 3-224 51-336 (340)
54 4aez_A CDC20, WD repeat-contai 99.8 1.3E-17 4.4E-22 173.6 25.4 208 2-226 145-381 (401)
55 2aq5_A Coronin-1A; WD40 repeat 99.8 3.3E-18 1.1E-22 178.0 19.9 205 2-224 93-341 (402)
56 1k8k_C P40, ARP2/3 complex 41 99.8 1.7E-17 5.7E-22 169.5 24.8 206 2-225 19-274 (372)
57 4ggc_A P55CDC, cell division c 99.8 2.4E-17 8.3E-22 164.5 25.2 206 2-224 78-314 (318)
58 2pm7_B Protein transport prote 99.8 9.5E-18 3.3E-22 167.3 21.9 173 3-176 67-294 (297)
59 1p22_A F-BOX/WD-repeat protein 99.8 2.4E-17 8.3E-22 173.4 25.9 205 2-226 142-366 (435)
60 3ei3_B DNA damage-binding prot 99.8 6.3E-18 2.2E-22 174.3 20.6 203 3-224 131-381 (383)
61 2xzm_R RACK1; ribosome, transl 99.8 1.6E-17 5.4E-22 169.2 23.1 163 2-169 87-286 (343)
62 3mkq_A Coatomer beta'-subunit; 99.8 1.8E-17 6.3E-22 187.9 26.0 206 2-225 24-259 (814)
63 1k8k_C P40, ARP2/3 complex 41 99.8 4.4E-17 1.5E-21 166.4 26.2 220 2-226 63-362 (372)
64 2j04_B YDR362CP, TAU91; beta p 99.8 2.1E-18 7.2E-23 185.9 16.8 220 3-224 225-516 (524)
65 3sfz_A APAF-1, apoptotic pepti 99.8 2.2E-17 7.5E-22 196.3 26.7 220 2-226 626-914 (1249)
66 3vl1_A 26S proteasome regulato 99.8 4.1E-18 1.4E-22 177.6 17.9 205 2-225 67-322 (420)
67 4e54_B DNA damage-binding prot 99.8 1.8E-18 6.3E-23 182.2 13.7 185 2-225 131-327 (435)
68 1gxr_A ESG1, transducin-like e 99.8 4.2E-17 1.4E-21 163.8 22.8 202 2-224 62-295 (337)
69 3i2n_A WD repeat-containing pr 99.8 1.4E-17 4.8E-22 168.9 19.3 221 3-224 80-352 (357)
70 3iz6_a 40S ribosomal protein R 99.8 2.1E-17 7.3E-22 170.8 21.0 137 3-139 170-332 (380)
71 3dwl_C Actin-related protein 2 99.8 6.1E-18 2.1E-22 173.8 16.5 218 2-223 66-377 (377)
72 3jro_A Fusion protein of prote 99.8 2E-17 6.8E-22 186.7 22.1 212 2-224 20-284 (753)
73 2w18_A PALB2, fancn, partner a 99.8 1.3E-17 4.6E-22 166.7 17.7 181 4-223 145-355 (356)
74 1p22_A F-BOX/WD-repeat protein 99.8 2.8E-17 9.5E-22 173.0 21.1 211 2-226 182-415 (435)
75 1r5m_A SIR4-interacting protei 99.8 8E-17 2.7E-21 167.1 24.1 205 2-224 56-318 (425)
76 2aq5_A Coronin-1A; WD40 repeat 99.8 3.9E-17 1.3E-21 169.8 21.4 205 6-224 50-298 (402)
77 4a11_B DNA excision repair pro 99.8 7.7E-17 2.6E-21 166.4 23.5 220 2-225 55-365 (408)
78 3dw8_B Serine/threonine-protei 99.8 1.8E-17 6.2E-22 174.0 18.9 206 2-225 39-373 (447)
79 4h5i_A Guanine nucleotide-exch 99.8 2.2E-17 7.6E-22 169.9 18.8 188 2-227 144-345 (365)
80 1r5m_A SIR4-interacting protei 99.8 6.7E-17 2.3E-21 167.7 22.6 205 2-226 119-362 (425)
81 3bg1_A Protein SEC13 homolog; 99.7 2E-17 6.8E-22 166.6 16.2 174 3-177 71-303 (316)
82 3gre_A Serine/threonine-protei 99.7 7.9E-17 2.7E-21 169.1 21.2 220 2-226 75-360 (437)
83 3gre_A Serine/threonine-protei 99.7 6E-17 2E-21 170.0 19.7 206 2-222 181-437 (437)
84 2j04_A TAU60, YPL007P, hypothe 99.7 7.1E-17 2.4E-21 171.5 20.2 149 2-154 96-273 (588)
85 3odt_A Protein DOA1; ubiquitin 99.7 1.8E-16 6.2E-21 157.6 22.0 199 2-225 28-255 (313)
86 2xyi_A Probable histone-bindin 99.7 8E-17 2.7E-21 169.4 19.7 225 3-229 141-414 (430)
87 3i2n_A WD repeat-containing pr 99.7 1.3E-16 4.3E-21 161.9 20.5 208 3-224 30-290 (357)
88 2pm9_A Protein WEB1, protein t 99.7 4.2E-17 1.4E-21 169.4 17.0 207 2-225 78-337 (416)
89 4aez_A CDC20, WD repeat-contai 99.7 2.9E-16 1E-20 163.3 23.0 202 3-224 103-335 (401)
90 3ei3_B DNA damage-binding prot 99.7 2E-16 6.9E-21 163.0 21.4 183 4-225 87-282 (383)
91 1yfq_A Cell cycle arrest prote 99.7 2.8E-16 9.5E-21 158.6 21.7 197 2-217 67-315 (342)
92 3lrv_A PRE-mRNA-splicing facto 99.7 5.9E-16 2E-20 157.4 24.2 166 6-173 88-299 (343)
93 2pm9_A Protein WEB1, protein t 99.7 5E-17 1.7E-21 168.8 16.4 206 3-224 24-293 (416)
94 2ovr_B FBW7, F-BOX/WD repeat p 99.7 3.5E-16 1.2E-20 164.9 22.8 201 2-224 128-347 (445)
95 1sq9_A Antiviral protein SKI8; 99.7 2.2E-16 7.4E-21 163.1 19.9 217 4-224 82-394 (397)
96 3k26_A Polycomb protein EED; W 99.7 7.3E-17 2.5E-21 164.0 15.8 219 4-225 35-318 (366)
97 4aow_A Guanine nucleotide-bind 99.7 3.7E-16 1.3E-20 157.4 20.7 138 2-139 139-289 (340)
98 2ovr_B FBW7, F-BOX/WD repeat p 99.7 1.2E-15 4.2E-20 160.7 25.1 201 3-225 169-391 (445)
99 2oaj_A Protein SNI1; WD40 repe 99.7 3.1E-16 1.1E-20 180.0 21.9 133 2-134 446-659 (902)
100 1sq9_A Antiviral protein SKI8; 99.7 6.1E-16 2.1E-20 159.6 22.0 206 4-225 27-322 (397)
101 3jrp_A Fusion protein of prote 99.7 9.7E-16 3.3E-20 156.5 23.0 176 3-179 69-299 (379)
102 2oaj_A Protein SNI1; WD40 repe 99.7 5.9E-16 2E-20 177.8 23.3 206 2-225 28-242 (902)
103 3odt_A Protein DOA1; ubiquitin 99.7 1.2E-15 4.2E-20 151.5 21.8 179 2-225 113-296 (313)
104 1yfq_A Cell cycle arrest prote 99.7 6.3E-16 2.2E-20 156.0 19.6 210 2-225 22-282 (342)
105 3v7d_B Cell division control p 99.7 1E-15 3.6E-20 161.8 22.0 202 2-225 172-421 (464)
106 3sfz_A APAF-1, apoptotic pepti 99.7 3.1E-15 1.1E-19 177.7 26.6 102 2-103 668-777 (1249)
107 4gga_A P55CDC, cell division c 99.7 9.5E-15 3.2E-19 152.9 27.1 201 3-224 116-352 (420)
108 3dw8_B Serine/threonine-protei 99.7 3.9E-15 1.3E-19 156.1 23.8 166 4-172 108-377 (447)
109 4gq1_A NUP37; propeller, trans 99.7 1.2E-15 4.1E-20 158.5 18.7 157 2-158 155-371 (393)
110 1pgu_A Actin interacting prote 99.7 1.9E-15 6.3E-20 165.1 20.8 199 5-225 175-402 (615)
111 2j04_A TAU60, YPL007P, hypothe 99.7 4.7E-16 1.6E-20 165.2 15.3 203 2-223 26-295 (588)
112 3mkq_A Coatomer beta'-subunit; 99.7 3.5E-15 1.2E-19 169.0 23.5 167 2-170 66-261 (814)
113 4ggc_A P55CDC, cell division c 99.7 2.1E-14 7.2E-19 143.0 26.4 132 3-138 36-183 (318)
114 3lrv_A PRE-mRNA-splicing facto 99.7 6.4E-16 2.2E-20 157.2 15.0 178 2-225 47-244 (343)
115 3vu4_A KMHSV2; beta-propeller 99.7 2E-15 6.9E-20 154.6 18.6 98 5-102 149-273 (355)
116 1pgu_A Actin interacting prote 99.7 6.7E-15 2.3E-19 160.7 23.3 201 2-224 127-365 (615)
117 3zwl_B Eukaryotic translation 99.7 6.1E-15 2.1E-19 149.7 21.5 181 24-224 24-248 (369)
118 2vdu_B TRNA (guanine-N(7)-)-me 99.6 6E-15 2.1E-19 155.8 21.5 138 2-140 113-275 (450)
119 2w18_A PALB2, fancn, partner a 99.6 3.4E-15 1.1E-19 149.4 18.1 101 2-104 192-318 (356)
120 1l0q_A Surface layer protein; 99.6 8.8E-15 3E-19 150.8 21.7 204 3-224 2-232 (391)
121 4a11_B DNA excision repair pro 99.6 2E-14 7E-19 148.1 23.4 140 3-142 156-329 (408)
122 2xyi_A Probable histone-bindin 99.6 9.6E-15 3.3E-19 153.4 19.8 133 3-136 193-353 (430)
123 3mmy_A MRNA export factor; mRN 99.6 1.7E-14 5.8E-19 146.4 20.6 123 17-142 23-166 (368)
124 3jro_A Fusion protein of prote 99.6 7.4E-15 2.5E-19 165.7 19.8 174 3-177 67-295 (753)
125 1l0q_A Surface layer protein; 99.6 3.4E-14 1.2E-18 146.4 23.3 206 2-225 42-275 (391)
126 3f3f_A Nucleoporin SEH1; struc 99.6 1E-14 3.6E-19 146.2 18.1 136 2-137 70-250 (351)
127 3bws_A Protein LP49; two-domai 99.6 4.8E-14 1.6E-18 147.4 22.7 206 2-224 180-431 (433)
128 4h5i_A Guanine nucleotide-exch 99.6 7E-15 2.4E-19 151.2 15.3 100 2-101 230-344 (365)
129 2vdu_B TRNA (guanine-N(7)-)-me 99.6 4.2E-14 1.5E-18 149.3 20.7 105 2-107 160-278 (450)
130 3vu4_A KMHSV2; beta-propeller 99.6 8.7E-14 3E-18 142.3 20.7 202 2-225 30-271 (355)
131 3bws_A Protein LP49; two-domai 99.5 2.6E-13 8.9E-18 141.8 21.8 168 3-170 134-336 (433)
132 2hqs_A Protein TOLB; TOLB, PAL 99.5 1.9E-12 6.5E-17 135.4 22.2 193 3-216 143-375 (415)
133 2oit_A Nucleoporin 214KDA; NH2 99.5 4.7E-13 1.6E-17 140.9 15.8 98 2-99 103-222 (434)
134 1nir_A Nitrite reductase; hemo 99.4 6.4E-12 2.2E-16 136.0 22.0 170 3-173 149-360 (543)
135 2hqs_A Protein TOLB; TOLB, PAL 99.3 2E-10 7E-15 119.9 23.3 164 2-167 189-386 (415)
136 3u4y_A Uncharacterized protein 99.3 3E-10 1E-14 113.8 22.4 217 2-225 50-304 (331)
137 1nir_A Nitrite reductase; hemo 99.3 1.1E-10 3.9E-15 126.2 20.3 209 2-225 189-458 (543)
138 3vgz_A Uncharacterized protein 99.2 1.4E-09 4.8E-14 109.6 24.6 197 2-215 99-334 (353)
139 1ri6_A Putative isomerase YBHE 99.2 3.7E-10 1.3E-14 113.2 19.5 206 2-223 48-306 (343)
140 1pby_B Quinohemoprotein amine 99.2 4.4E-10 1.5E-14 112.3 19.4 135 4-140 2-167 (337)
141 3u4y_A Uncharacterized protein 99.2 1E-09 3.4E-14 110.0 21.2 167 3-170 10-209 (331)
142 1jmx_B Amine dehydrogenase; ox 99.2 1.4E-09 4.7E-14 109.3 22.0 101 2-102 10-136 (349)
143 2oit_A Nucleoporin 214KDA; NH2 99.2 4.9E-10 1.7E-14 117.8 18.6 100 3-102 162-280 (434)
144 2ojh_A Uncharacterized protein 99.2 5E-10 1.7E-14 109.2 16.9 197 2-216 52-293 (297)
145 2ecf_A Dipeptidyl peptidase IV 99.2 4E-10 1.4E-14 126.2 17.7 101 2-104 47-185 (741)
146 3hfq_A Uncharacterized protein 99.2 1.2E-09 4E-14 110.5 18.9 206 2-222 50-314 (347)
147 1ri6_A Putative isomerase YBHE 99.1 1.7E-09 5.9E-14 108.2 19.4 211 5-224 7-261 (343)
148 2ojh_A Uncharacterized protein 99.1 1.9E-09 6.6E-14 105.0 17.7 199 9-216 18-238 (297)
149 3vgz_A Uncharacterized protein 99.0 2.1E-08 7.2E-13 100.9 21.2 158 2-159 151-326 (353)
150 1k32_A Tricorn protease; prote 99.0 6.8E-09 2.3E-13 121.2 19.3 178 2-223 307-500 (1045)
151 1xfd_A DIP, dipeptidyl aminope 99.0 4.8E-09 1.6E-13 117.1 17.0 88 2-91 71-194 (723)
152 2ecf_A Dipeptidyl peptidase IV 99.0 8.3E-09 2.8E-13 115.5 18.9 88 2-91 119-230 (741)
153 1xfd_A DIP, dipeptidyl aminope 99.0 3.1E-09 1E-13 118.6 13.8 99 2-103 27-146 (723)
154 1k32_A Tricorn protease; prote 99.0 1.2E-08 3.9E-13 119.2 19.0 101 2-102 389-504 (1045)
155 2z3z_A Dipeptidyl aminopeptida 98.9 2E-08 6.9E-13 111.8 18.1 99 2-101 131-294 (706)
156 2z3z_A Dipeptidyl aminopeptida 98.9 1.3E-08 4.5E-13 113.3 15.5 94 3-100 35-150 (706)
157 1z68_A Fibroblast activation p 98.9 8.6E-09 3E-13 115.1 13.5 100 2-103 26-142 (719)
158 3hfq_A Uncharacterized protein 98.9 2.6E-07 8.9E-12 93.0 22.3 99 2-100 96-218 (347)
159 1pby_B Quinohemoprotein amine 98.8 1E-07 3.4E-12 95.0 18.7 201 2-224 44-309 (337)
160 3o4h_A Acylamino-acid-releasin 98.8 2.4E-08 8.4E-13 108.6 14.5 205 2-223 32-274 (582)
161 1jmx_B Amine dehydrogenase; ox 98.8 1.1E-07 3.7E-12 95.3 18.2 209 2-215 53-335 (349)
162 3scy_A Hypothetical bacterial 98.8 1.6E-07 5.4E-12 95.3 19.2 186 2-222 108-334 (361)
163 1q7f_A NHL, brain tumor CG1071 98.8 7.5E-07 2.6E-11 87.1 22.5 204 2-223 40-278 (286)
164 3fvz_A Peptidyl-glycine alpha- 98.8 5.5E-07 1.9E-11 90.4 21.0 209 2-224 34-321 (329)
165 4a5s_A Dipeptidyl peptidase 4 98.8 4E-08 1.4E-12 110.3 13.7 97 2-102 27-143 (740)
166 3no2_A Uncharacterized protein 98.8 8.5E-07 2.9E-11 86.9 21.4 98 2-102 4-109 (276)
167 3o4h_A Acylamino-acid-releasin 98.8 1.2E-07 4.1E-12 103.1 16.7 123 5-134 125-274 (582)
168 3fvz_A Peptidyl-glycine alpha- 98.7 2.3E-06 8E-11 85.8 23.0 105 2-106 101-233 (329)
169 1z68_A Fibroblast activation p 98.7 1E-07 3.6E-12 106.3 14.2 85 2-90 70-189 (719)
170 1jof_A Carboxy-CIS,CIS-muconat 98.7 4.4E-07 1.5E-11 92.5 16.9 99 2-102 50-179 (365)
171 3scy_A Hypothetical bacterial 98.6 2.8E-06 9.5E-11 86.0 22.2 195 2-223 60-289 (361)
172 2oiz_A Aromatic amine dehydrog 98.6 4.8E-07 1.6E-11 92.4 16.4 101 3-105 15-145 (361)
173 1jof_A Carboxy-CIS,CIS-muconat 98.6 8.9E-07 3E-11 90.2 18.4 90 11-100 117-224 (365)
174 3pe7_A Oligogalacturonate lyas 98.6 3.6E-06 1.2E-10 85.8 20.5 101 2-102 91-227 (388)
175 3azo_A Aminopeptidase; POP fam 98.5 5.3E-07 1.8E-11 99.4 14.3 100 2-101 89-228 (662)
176 1q7f_A NHL, brain tumor CG1071 98.5 3.1E-06 1.1E-10 82.6 18.1 99 2-100 131-238 (286)
177 1qks_A Cytochrome CD1 nitrite 98.5 3.4E-05 1.2E-09 83.4 26.6 168 4-172 168-377 (567)
178 3azo_A Aminopeptidase; POP fam 98.5 3.1E-06 1.1E-10 93.2 18.6 101 2-102 140-276 (662)
179 3pe7_A Oligogalacturonate lyas 98.5 2.8E-06 9.6E-11 86.6 16.4 101 2-102 46-179 (388)
180 4a5s_A Dipeptidyl peptidase 4 98.4 1.6E-06 5.5E-11 97.2 14.9 95 2-99 72-201 (740)
181 1xip_A Nucleoporin NUP159; bet 98.4 1.2E-06 4.2E-11 89.7 11.8 95 2-102 96-193 (388)
182 3dsm_A Uncharacterized protein 98.3 4.6E-05 1.6E-09 76.3 21.2 136 3-140 54-216 (328)
183 2bkl_A Prolyl endopeptidase; m 98.3 5.5E-06 1.9E-10 92.1 15.0 98 2-101 131-262 (695)
184 2dg1_A DRP35, lactonase; beta 98.3 0.00018 6.2E-09 71.5 24.2 134 2-135 55-212 (333)
185 2hz6_A Endoplasmic reticulum t 98.3 2.2E-07 7.7E-12 95.1 2.7 136 1-138 7-151 (369)
186 2xdw_A Prolyl endopeptidase; a 98.2 1.7E-05 5.9E-10 88.3 17.3 98 2-100 135-268 (710)
187 1rwi_B Serine/threonine-protei 98.2 8.6E-05 2.9E-09 71.3 18.4 137 2-139 34-183 (270)
188 2dg1_A DRP35, lactonase; beta 98.2 5.7E-05 2E-09 75.2 17.4 96 6-103 20-124 (333)
189 3dsm_A Uncharacterized protein 98.1 0.00024 8.3E-09 70.9 21.6 160 12-171 16-215 (328)
190 3c5m_A Oligogalacturonate lyas 98.1 3.7E-05 1.3E-09 78.1 15.8 101 2-102 91-227 (396)
191 2gop_A Trilobed protease; beta 98.1 7.4E-05 2.5E-09 74.7 17.4 82 2-89 23-123 (347)
192 3no2_A Uncharacterized protein 98.1 8.1E-05 2.8E-09 72.7 16.1 103 2-104 87-199 (276)
193 3e5z_A Putative gluconolactona 98.1 6.6E-05 2.2E-09 73.5 15.6 83 3-86 39-131 (296)
194 1xip_A Nucleoporin NUP159; bet 98.0 0.00019 6.6E-09 73.3 17.4 128 3-138 49-193 (388)
195 2gop_A Trilobed protease; beta 97.9 0.00013 4.5E-09 72.8 15.2 85 2-90 69-190 (347)
196 3e5z_A Putative gluconolactona 97.9 0.00041 1.4E-08 67.7 18.2 101 2-102 79-205 (296)
197 2mad_H Methylamine dehydrogena 97.8 0.0022 7.6E-08 65.3 22.0 133 2-138 31-197 (373)
198 1rwi_B Serine/threonine-protei 97.8 0.0015 5E-08 62.5 19.2 100 2-102 77-182 (270)
199 2bkl_A Prolyl endopeptidase; m 97.8 0.00068 2.3E-08 75.1 19.0 100 2-102 178-306 (695)
200 3c5m_A Oligogalacturonate lyas 97.8 0.00028 9.5E-09 71.5 14.6 87 18-104 15-115 (396)
201 3hrp_A Uncharacterized protein 97.8 0.0014 4.8E-08 67.7 19.8 100 2-102 141-251 (409)
202 1qks_A Cytochrome CD1 nitrite 97.7 0.0041 1.4E-07 67.0 23.2 138 2-140 207-377 (567)
203 1yr2_A Prolyl oligopeptidase; 97.7 0.0011 3.8E-08 74.0 18.5 99 2-101 173-304 (741)
204 2hz6_A Endoplasmic reticulum t 97.7 1.1E-05 3.7E-10 82.5 1.9 99 3-104 49-153 (369)
205 2oiz_A Aromatic amine dehydrog 97.6 0.00022 7.4E-09 72.5 11.1 69 12-83 285-360 (361)
206 3nok_A Glutaminyl cyclase; bet 97.6 0.0061 2.1E-07 58.3 20.3 105 3-109 65-173 (268)
207 3sjl_D Methylamine dehydrogena 97.6 0.00077 2.6E-08 68.7 14.8 133 2-136 43-208 (386)
208 3q7m_A Lipoprotein YFGL, BAMB; 97.6 0.0046 1.6E-07 62.5 20.8 206 3-213 103-345 (376)
209 3q7m_A Lipoprotein YFGL, BAMB; 97.6 0.0051 1.7E-07 62.1 20.5 208 2-213 52-304 (376)
210 1yr2_A Prolyl oligopeptidase; 97.5 0.00085 2.9E-08 75.0 15.0 100 2-102 117-254 (741)
211 2z2n_A Virginiamycin B lyase; 97.5 0.035 1.2E-06 53.2 24.8 98 2-102 25-130 (299)
212 2xdw_A Prolyl endopeptidase; a 97.5 0.0042 1.4E-07 68.9 19.6 100 2-102 181-322 (710)
213 1pjx_A Dfpase, DIISOPROPYLFLUO 97.4 0.0053 1.8E-07 59.9 17.6 89 13-102 153-258 (314)
214 2mad_H Methylamine dehydrogena 97.4 0.064 2.2E-06 54.3 25.8 99 2-104 76-199 (373)
215 3nol_A Glutamine cyclotransfer 97.3 0.043 1.5E-06 52.4 21.7 105 2-108 52-163 (262)
216 3mbr_X Glutamine cyclotransfer 97.3 0.061 2.1E-06 50.7 22.5 105 3-109 31-142 (243)
217 3g4e_A Regucalcin; six bladed 97.2 0.033 1.1E-06 54.2 21.0 99 2-102 64-184 (297)
218 2z2n_A Virginiamycin B lyase; 97.2 0.075 2.6E-06 50.8 22.8 99 2-102 67-172 (299)
219 1pjx_A Dfpase, DIISOPROPYLFLUO 97.2 0.034 1.2E-06 54.0 20.5 98 5-102 84-210 (314)
220 3c75_H MADH, methylamine dehyd 97.2 0.012 4.2E-07 60.7 17.4 123 13-137 99-249 (426)
221 3sjl_D Methylamine dehydrogena 97.1 0.013 4.4E-07 59.6 16.8 99 2-103 88-212 (386)
222 3g4e_A Regucalcin; six bladed 97.1 0.036 1.2E-06 53.9 19.3 84 3-88 25-115 (297)
223 1yiq_A Quinohemoprotein alcoho 97.1 0.014 4.8E-07 64.5 17.9 138 3-140 121-342 (689)
224 2qc5_A Streptogramin B lactona 97.0 0.26 9.1E-06 46.9 25.7 99 2-102 30-135 (300)
225 1kb0_A Quinohemoprotein alcoho 96.9 0.026 9.1E-07 62.1 18.7 138 3-140 128-350 (677)
226 3dr2_A Exported gluconolactona 96.9 0.015 5.2E-07 56.8 15.2 83 3-86 56-146 (305)
227 2iwa_A Glutamine cyclotransfer 96.9 0.053 1.8E-06 52.1 18.4 104 3-108 32-143 (266)
228 3iuj_A Prolyl endopeptidase; h 96.9 0.011 3.8E-07 65.3 15.4 98 2-102 139-270 (693)
229 3hxj_A Pyrrolo-quinoline quino 96.9 0.04 1.4E-06 53.9 18.0 84 15-99 80-165 (330)
230 3hrp_A Uncharacterized protein 96.9 0.063 2.1E-06 55.1 20.1 100 2-101 181-299 (409)
231 2ghs_A AGR_C_1268P; regucalcin 96.9 0.16 5.4E-06 50.1 22.0 95 2-99 100-209 (326)
232 3dr2_A Exported gluconolactona 96.8 0.035 1.2E-06 54.2 16.7 99 2-102 96-226 (305)
233 2ghs_A AGR_C_1268P; regucalcin 96.8 0.038 1.3E-06 54.7 17.0 83 3-88 61-151 (326)
234 1kb0_A Quinohemoprotein alcoho 96.8 0.004 1.4E-07 68.7 10.5 101 4-104 328-511 (677)
235 2ece_A 462AA long hypothetical 96.7 0.038 1.3E-06 57.0 15.9 98 5-102 150-291 (462)
236 2qe8_A Uncharacterized protein 96.6 0.034 1.2E-06 55.4 15.4 101 2-103 27-157 (343)
237 3c75_H MADH, methylamine dehyd 96.6 0.025 8.5E-07 58.4 14.1 98 2-102 128-250 (426)
238 2qc5_A Streptogramin B lactona 96.5 0.46 1.6E-05 45.2 22.4 99 2-102 72-177 (300)
239 4db6_A Armadillo repeat protei 96.5 0.026 8.8E-07 51.7 12.6 138 418-559 67-206 (210)
240 3iuj_A Prolyl endopeptidase; h 96.5 0.11 3.8E-06 57.2 19.9 100 2-102 184-316 (693)
241 4db8_A Armadillo-repeat protei 96.5 0.012 4.1E-07 55.7 10.3 147 405-557 98-246 (252)
242 1mda_H Methylamine dehydrogena 96.5 0.012 4.1E-07 59.6 10.5 95 4-100 33-158 (368)
243 3hxj_A Pyrrolo-quinoline quino 96.4 0.055 1.9E-06 52.9 15.1 97 3-102 107-205 (330)
244 2ece_A 462AA long hypothetical 96.4 0.066 2.3E-06 55.2 15.5 98 5-102 98-239 (462)
245 2iwa_A Glutamine cyclotransfer 96.1 0.51 1.7E-05 45.1 19.2 119 22-142 9-141 (266)
246 4hxt_A De novo protein OR329; 96.1 0.077 2.6E-06 49.7 13.5 137 418-558 99-237 (252)
247 1yiq_A Quinohemoprotein alcoho 95.9 0.035 1.2E-06 61.3 11.4 52 52-103 454-508 (689)
248 1npe_A Nidogen, entactin; glyc 95.9 1.2 4.2E-05 41.9 21.1 98 4-101 49-156 (267)
249 2fp8_A Strictosidine synthase; 95.8 1.3 4.4E-05 43.1 21.5 135 2-136 29-216 (322)
250 4db8_A Armadillo-repeat protei 95.8 0.23 7.9E-06 46.5 15.3 112 404-521 55-167 (252)
251 4hxt_A De novo protein OR329; 95.6 0.19 6.6E-06 46.8 14.1 111 405-521 46-157 (252)
252 3now_A UNC-45 protein, SD10334 95.6 0.047 1.6E-06 60.8 10.8 139 419-560 637-780 (810)
253 1npe_A Nidogen, entactin; glyc 95.5 0.91 3.1E-05 42.8 18.7 99 3-101 91-199 (267)
254 2qe8_A Uncharacterized protein 95.5 0.048 1.7E-06 54.3 9.7 98 4-102 133-280 (343)
255 3nol_A Glutamine cyclotransfer 95.2 1.1 3.8E-05 42.6 17.5 117 23-141 32-160 (262)
256 1kv9_A Type II quinohemoprotei 95.1 0.63 2.2E-05 50.9 18.0 138 3-140 117-337 (668)
257 1mda_H Methylamine dehydrogena 94.6 0.12 4.1E-06 52.2 9.6 68 38-105 269-351 (368)
258 2ad6_A Methanol dehydrogenase 94.6 0.19 6.7E-06 53.9 11.8 52 52-103 443-497 (571)
259 1k3i_A Galactose oxidase precu 94.5 0.77 2.6E-05 50.1 16.7 103 2-104 197-327 (656)
260 4db6_A Armadillo repeat protei 94.5 0.36 1.2E-05 43.8 12.0 100 418-521 25-125 (210)
261 2ad6_A Methanol dehydrogenase 94.3 3.4 0.00012 44.1 20.8 65 3-68 115-193 (571)
262 3mbr_X Glutamine cyclotransfer 94.2 1.1 3.7E-05 42.2 14.6 118 23-141 10-138 (243)
263 3nok_A Glutaminyl cyclase; bet 94.2 1.8 6.2E-05 41.1 16.2 117 23-141 44-169 (268)
264 1w6s_A Methanol dehydrogenase 93.9 1.6 5.5E-05 47.0 17.2 102 3-104 62-195 (599)
265 3tc9_A Hypothetical hydrolase; 93.5 1.9 6.5E-05 44.2 16.6 98 5-102 151-259 (430)
266 1flg_A Protein (quinoprotein e 93.3 0.54 1.8E-05 50.6 12.3 51 52-102 465-518 (582)
267 1kv9_A Type II quinohemoprotei 92.9 0.24 8.2E-06 54.3 9.0 53 52-104 437-492 (668)
268 1fwx_A Nitrous oxide reductase 92.9 0.57 1.9E-05 50.0 11.3 90 12-102 174-310 (595)
269 4a2l_A BT_4663, two-component 92.6 12 0.00041 41.4 22.6 97 6-103 276-389 (795)
270 2p4o_A Hypothetical protein; p 92.5 5.8 0.0002 38.1 17.5 80 23-103 23-107 (306)
271 4b8j_A Importin subunit alpha- 92.0 0.81 2.8E-05 48.2 11.5 137 418-558 342-492 (528)
272 1xqr_A HSPBP1 protein; armadil 92.0 2.1 7.3E-05 41.4 13.5 100 419-522 139-239 (296)
273 1w6s_A Methanol dehydrogenase 91.9 0.94 3.2E-05 48.8 11.9 26 4-29 324-350 (599)
274 2xe4_A Oligopeptidase B; hydro 91.7 0.92 3.1E-05 50.3 11.9 97 2-101 185-305 (751)
275 4a2l_A BT_4663, two-component 91.6 11 0.00037 41.7 20.7 99 5-103 322-439 (795)
276 1xqr_A HSPBP1 protein; armadil 91.0 4 0.00014 39.5 14.3 136 375-521 58-196 (296)
277 2fp8_A Strictosidine synthase; 90.8 6.4 0.00022 38.0 15.9 98 4-101 92-217 (322)
278 4b8j_A Importin subunit alpha- 90.7 2.7 9.2E-05 44.1 13.9 100 419-522 300-401 (528)
279 1fwx_A Nitrous oxide reductase 90.4 8.1 0.00028 41.1 16.9 155 2-169 100-309 (595)
280 2p4o_A Hypothetical protein; p 90.1 6.9 0.00024 37.5 15.3 99 2-101 42-148 (306)
281 2xbg_A YCF48-like protein; pho 89.8 4 0.00014 39.9 13.5 71 29-99 159-233 (327)
282 3ul1_B Importin subunit alpha- 89.6 2.7 9.3E-05 44.1 12.6 136 419-558 330-474 (510)
283 1k3i_A Galactose oxidase precu 89.6 2.2 7.5E-05 46.4 12.3 68 37-104 190-278 (656)
284 3ul1_B Importin subunit alpha- 89.5 1.6 5.4E-05 45.9 10.7 100 418-521 287-387 (510)
285 3tpo_A Importin subunit alpha- 89.3 2 6.9E-05 45.3 11.4 99 419-521 307-406 (529)
286 3v9f_A Two-component system se 88.9 31 0.0011 37.9 22.9 98 5-102 270-394 (781)
287 3v9f_A Two-component system se 88.8 24 0.00082 38.8 20.4 98 5-103 375-481 (781)
288 2p9w_A MAL S 1 allergenic prot 88.3 14 0.00046 36.3 15.6 89 12-100 99-215 (334)
289 3opb_A SWI5-dependent HO expre 88.1 0.45 1.5E-05 52.2 5.3 103 419-521 620-728 (778)
290 3nmw_A APC variant protein; AR 87.9 5 0.00017 39.9 12.6 190 359-557 129-329 (354)
291 2vpj_A Kelch-like protein 12; 87.8 10 0.00034 36.1 14.6 101 2-104 112-235 (301)
292 3tpo_A Importin subunit alpha- 87.4 2 7E-05 45.2 10.0 96 423-521 227-322 (529)
293 1wa5_B Importin alpha subunit; 87.3 7.3 0.00025 40.8 14.3 100 418-521 186-286 (530)
294 1ijq_A LDL receptor, low-densi 87.1 22 0.00076 34.2 19.7 99 3-101 89-196 (316)
295 2z6g_A B-catenin; FULL-length, 86.8 6.1 0.00021 43.9 13.8 113 404-521 193-305 (780)
296 1wa5_B Importin alpha subunit; 86.4 4.1 0.00014 42.8 11.6 100 418-521 228-328 (530)
297 2xbg_A YCF48-like protein; pho 85.9 4.3 0.00015 39.6 10.8 93 6-98 218-320 (327)
298 3nmw_A APC variant protein; AR 85.8 8.1 0.00028 38.4 12.8 100 420-521 99-200 (354)
299 3pbp_A Nucleoporin NUP82; beta 85.4 11 0.00037 38.4 13.3 68 34-102 67-160 (452)
300 2xe4_A Oligopeptidase B; hydro 85.3 2.7 9.1E-05 46.6 9.8 71 30-102 170-258 (751)
301 3qqz_A Putative uncharacterize 85.1 17 0.00057 34.2 13.9 98 3-100 132-253 (255)
302 1flg_A Protein (quinoprotein e 84.8 1.4 4.9E-05 47.2 7.1 72 12-83 465-541 (582)
303 4hw6_A Hypothetical protein, I 84.8 22 0.00076 36.1 16.0 99 4-102 153-261 (433)
304 3amr_A 3-phytase; beta-propell 84.7 32 0.0011 34.0 16.1 94 6-99 90-209 (355)
305 2z6h_A Catenin beta-1, beta-ca 84.6 14 0.00049 39.7 15.2 112 405-521 58-169 (644)
306 3v65_B Low-density lipoprotein 84.6 34 0.0012 34.0 17.7 99 3-101 171-278 (386)
307 2xn4_A Kelch-like protein 2; s 84.5 12 0.00041 35.5 13.2 101 2-104 108-233 (302)
308 2z6h_A Catenin beta-1, beta-ca 84.4 8.3 0.00028 41.6 13.1 100 418-521 27-127 (644)
309 2z6g_A B-catenin; FULL-length, 84.1 10 0.00034 42.1 13.9 100 418-521 163-263 (780)
310 1xm9_A Plakophilin 1; armadill 84.0 4.6 0.00016 41.7 10.4 139 419-559 298-446 (457)
311 3amr_A 3-phytase; beta-propell 84.0 35 0.0012 33.7 17.4 94 4-99 41-161 (355)
312 1xm9_A Plakophilin 1; armadill 83.9 17 0.00058 37.3 14.7 120 405-531 46-182 (457)
313 2p9w_A MAL S 1 allergenic prot 83.6 35 0.0012 33.4 16.5 98 4-101 25-169 (334)
314 2jdq_A Importin alpha-1 subuni 83.3 8.5 0.00029 38.9 12.1 100 418-521 247-347 (450)
315 2vpj_A Kelch-like protein 12; 82.8 16 0.00055 34.6 13.3 100 2-104 62-188 (301)
316 3l6x_A Catenin delta-1; cateni 82.7 22 0.00074 37.9 15.1 139 418-558 322-472 (584)
317 3v64_C Agrin; beta propeller, 82.6 38 0.0013 33.1 18.5 99 3-101 128-235 (349)
318 3v65_B Low-density lipoprotein 82.5 41 0.0014 33.4 23.2 95 7-101 90-191 (386)
319 3nmz_A APC variant protein; pr 82.4 9.7 0.00033 39.3 11.9 136 419-557 301-445 (458)
320 1jdh_A Beta-catenin; beta-cate 81.8 15 0.0005 38.0 13.5 100 418-521 30-130 (529)
321 1jdh_A Beta-catenin; beta-cate 81.6 15 0.0005 38.1 13.4 100 418-521 73-172 (529)
322 3tt9_A Plakophilin-2; cell adh 81.5 5.1 0.00018 37.2 8.6 114 405-521 10-124 (233)
323 2jdq_A Importin alpha-1 subuni 81.4 8.5 0.00029 38.9 11.2 99 418-521 163-263 (450)
324 3sov_A LRP-6, low-density lipo 81.1 41 0.0014 32.4 17.0 99 3-101 91-198 (318)
325 3tc9_A Hypothetical hydrolase; 80.6 51 0.0018 33.3 19.3 67 34-100 227-301 (430)
326 3ii7_A Kelch-like protein 7; p 79.9 16 0.00055 34.7 12.1 16 161-176 218-233 (306)
327 4fdd_A Transportin-1; heat rep 79.1 38 0.0013 37.7 16.5 100 418-521 372-471 (852)
328 3nmz_A APC variant protein; pr 78.9 14 0.00049 38.0 11.8 101 420-521 215-316 (458)
329 1zgk_A Kelch-like ECH-associat 78.2 14 0.00048 35.3 11.1 100 2-104 121-244 (308)
330 3p5b_L Low density lipoprotein 77.5 61 0.0021 32.3 19.6 99 3-101 171-278 (400)
331 4asc_A Kelch repeat and BTB do 77.5 19 0.00065 34.4 11.8 15 160-174 269-283 (315)
332 3qqz_A Putative uncharacterize 77.3 46 0.0016 31.1 13.9 95 4-99 40-150 (255)
333 2xn4_A Kelch-like protein 2; s 76.4 28 0.00096 32.8 12.7 17 160-176 221-237 (302)
334 3ii7_A Kelch-like protein 7; p 74.5 27 0.00092 33.1 11.9 19 160-178 264-282 (306)
335 1n7d_A LDL receptor, low-densi 72.8 11 0.00039 41.1 9.7 98 3-100 465-571 (699)
336 3tt9_A Plakophilin-2; cell adh 72.2 24 0.00082 32.6 10.3 68 452-521 12-81 (233)
337 2woz_A Kelch repeat and BTB do 71.9 36 0.0012 32.4 12.3 15 160-174 279-293 (318)
338 3m0c_C LDL receptor, low-densi 71.9 1.2E+02 0.0043 33.3 19.7 100 3-102 483-591 (791)
339 3now_A UNC-45 protein, SD10334 71.5 30 0.001 38.3 12.6 99 418-521 508-610 (810)
340 2be1_A Serine/threonine-protei 71.5 2.4 8.2E-05 41.9 3.4 104 3-106 10-136 (339)
341 3kya_A Putative phosphatase; s 70.3 80 0.0027 32.7 14.8 96 4-99 153-277 (496)
342 4asc_A Kelch repeat and BTB do 68.1 71 0.0024 30.2 13.4 17 160-176 213-229 (315)
343 2qk1_A Protein STU2; STU2P, XM 67.1 48 0.0016 30.7 11.4 75 444-521 100-175 (249)
344 2be1_A Serine/threonine-protei 66.8 15 0.00052 36.1 8.1 32 186-217 111-142 (339)
345 4gq2_M Nucleoporin NUP120; bet 66.7 46 0.0016 37.7 13.2 38 72-109 237-275 (950)
346 3opb_A SWI5-dependent HO expre 65.7 53 0.0018 36.1 12.6 97 422-521 576-683 (778)
347 3sre_A PON1, serum paraoxonase 65.5 52 0.0018 32.5 11.8 89 12-100 138-252 (355)
348 3l6x_A Catenin delta-1; cateni 65.2 31 0.0011 36.7 10.6 65 455-521 55-119 (584)
349 3ei3_A DNA damage-binding prot 64.1 2.1E+02 0.0073 33.0 18.9 92 15-108 494-599 (1158)
350 3sov_A LRP-6, low-density lipo 63.0 92 0.0032 29.8 13.1 91 12-102 144-240 (318)
351 3v64_C Agrin; beta propeller, 62.9 1.1E+02 0.0039 29.5 24.5 94 9-102 49-149 (349)
352 3pbp_A Nucleoporin NUP82; beta 62.0 42 0.0015 34.1 10.3 93 2-96 76-208 (452)
353 3s94_A LRP-6, low-density lipo 61.8 1.5E+02 0.0051 31.5 15.5 100 3-102 96-204 (619)
354 1zgk_A Kelch-like ECH-associat 60.5 43 0.0015 31.7 10.1 17 160-176 232-248 (308)
355 3a9g_A Putative uncharacterize 59.1 88 0.003 30.6 12.3 84 3-87 40-151 (354)
356 1w63_A Adapter-related protein 58.2 84 0.0029 33.4 12.8 54 417-478 119-172 (618)
357 2woz_A Kelch repeat and BTB do 57.3 1.1E+02 0.0037 28.9 12.4 17 160-176 223-239 (318)
358 4gq2_M Nucleoporin NUP120; bet 56.9 37 0.0013 38.5 10.0 35 34-68 237-274 (950)
359 2vgl_B AP-2 complex subunit be 56.8 42 0.0014 35.6 10.1 92 417-521 98-189 (591)
360 3p5b_L Low density lipoprotein 55.7 1.6E+02 0.0056 29.1 26.7 96 7-102 86-192 (400)
361 2qk2_A LP04448P; mini spindles 55.7 1E+02 0.0034 27.9 11.4 71 442-521 92-162 (242)
362 4hw6_A Hypothetical protein, I 54.9 1.4E+02 0.0047 30.1 13.2 65 35-99 337-432 (433)
363 3a9g_A Putative uncharacterize 53.4 86 0.0029 30.6 11.1 78 24-101 20-115 (354)
364 3m0c_C LDL receptor, low-densi 53.4 2.6E+02 0.0089 30.7 25.9 96 7-102 398-504 (791)
365 4gmo_A Putative uncharacterize 52.8 1.8E+02 0.0061 31.3 14.4 71 405-478 36-106 (684)
366 4a0p_A LRP6, LRP-6, low-densit 52.6 1.9E+02 0.0064 30.8 14.4 99 3-101 401-509 (628)
367 1n7d_A LDL receptor, low-densi 51.0 64 0.0022 35.0 10.5 95 6-100 421-528 (699)
368 3b2a_A TON_1937, putative unch 50.1 1.6E+02 0.0054 27.3 14.0 95 422-521 113-218 (265)
369 4a0p_A LRP6, LRP-6, low-densit 49.0 2.7E+02 0.0092 29.6 18.7 100 3-102 92-199 (628)
370 2ism_A Putative oxidoreductase 47.2 1.9E+02 0.0067 27.9 12.6 77 25-101 23-115 (352)
371 3ei3_A DNA damage-binding prot 46.0 1.3E+02 0.0046 34.7 12.5 56 45-100 938-999 (1158)
372 1tl2_A L10, protein (tachylect 44.4 41 0.0014 30.9 6.3 92 4-99 5-115 (236)
373 2ism_A Putative oxidoreductase 42.7 2.4E+02 0.0082 27.2 12.5 84 2-87 41-151 (352)
374 2zwa_A Leucine carboxyl methyl 42.6 2.9E+02 0.01 29.6 14.2 102 2-104 397-526 (695)
375 3dad_A FH1/FH2 domain-containi 41.7 2.5E+02 0.0087 27.2 13.2 111 360-478 122-232 (339)
376 3sre_A PON1, serum paraoxonase 40.0 1.5E+02 0.0052 29.0 10.3 60 28-87 216-283 (355)
377 1te4_A Conserved protein MTH18 38.7 1.2E+02 0.0042 24.2 8.2 78 417-519 54-131 (131)
378 2qk1_A Protein STU2; STU2P, XM 37.7 82 0.0028 29.0 7.6 74 446-521 144-220 (249)
379 2qk2_A LP04448P; mini spindles 36.5 2.3E+02 0.008 25.3 12.5 106 404-521 99-205 (242)
380 3f7f_A Nucleoporin NUP120; nuc 36.5 97 0.0033 33.7 8.6 36 73-109 224-259 (729)
381 2bpt_A Importin beta-1 subunit 36.4 4E+02 0.014 28.9 14.4 99 419-521 383-482 (861)
382 1qgr_A Protein (importin beta 36.4 3.6E+02 0.012 29.3 14.0 100 418-521 379-479 (876)
383 2g8s_A Glucose/sorbosone dehyd 35.2 2.1E+02 0.0071 27.7 10.5 42 2-43 28-76 (353)
384 4fhn_B Nucleoporin NUP120; pro 33.9 61 0.0021 37.5 7.2 38 72-109 239-277 (1139)
385 4fhn_B Nucleoporin NUP120; pro 33.3 53 0.0018 38.0 6.6 34 35-68 240-276 (1139)
386 3ltj_A Alpharep-4; protein eng 32.4 2.4E+02 0.0081 24.1 10.2 79 418-521 89-167 (201)
387 1tl2_A L10, protein (tachylect 31.0 46 0.0016 30.6 4.3 57 36-94 91-157 (236)
388 1ibr_B P95, importin beta-1 su 28.7 2.1E+02 0.0072 28.2 9.6 58 420-478 145-204 (462)
389 3s94_A LRP-6, low-density lipo 28.1 5.5E+02 0.019 27.0 13.9 99 3-101 404-511 (619)
390 3fbl_A Putative uncharacterize 27.9 41 0.0014 23.5 2.6 27 222-248 55-81 (82)
391 2uvk_A YJHT; unknown function, 26.8 4.1E+02 0.014 25.1 12.6 14 91-104 168-181 (357)
392 3b7f_A Glycosyl hydrolase, BNR 26.7 4.4E+02 0.015 25.4 12.6 93 4-97 23-144 (394)
393 3ott_A Two-component system se 26.7 4.8E+02 0.016 28.0 12.7 94 6-102 159-262 (758)
394 1u6g_C TIP120 protein, CAND1; 26.3 3E+02 0.01 31.8 11.4 109 405-521 50-163 (1230)
395 3ott_A Two-component system se 25.9 6.3E+02 0.022 27.0 14.1 89 4-96 203-303 (758)
396 2uvk_A YJHT; unknown function, 25.7 1.7E+02 0.0059 27.9 8.0 16 161-176 287-302 (357)
397 1wjt_A Transcription elongatio 25.1 1.7E+02 0.0058 23.0 6.2 52 504-558 28-80 (103)
398 1cru_A Protein (soluble quinop 25.1 5.3E+02 0.018 25.8 12.6 90 2-91 37-164 (454)
399 2vgl_A Adaptor protein complex 24.0 2.2E+02 0.0077 30.1 9.1 92 417-521 123-216 (621)
400 3f7f_A Nucleoporin NUP120; nuc 24.0 66 0.0023 34.9 4.7 29 2-30 230-259 (729)
401 1qgr_A Protein (importin beta 23.3 1.9E+02 0.0065 31.6 8.7 97 422-521 625-722 (876)
402 3das_A Putative oxidoreductase 23.1 4.8E+02 0.017 25.2 10.6 77 24-100 23-116 (347)
403 1ibr_B P95, importin beta-1 su 23.0 2.7E+02 0.0091 27.4 9.1 73 447-521 365-437 (462)
404 1xi4_A Clathrin heavy chain; a 22.9 1E+03 0.035 28.4 15.2 62 12-73 124-201 (1630)
405 4fdd_A Transportin-1; heat rep 22.7 7.6E+02 0.026 26.8 14.5 98 421-521 645-742 (852)
406 3kya_A Putative phosphatase; s 22.7 6.3E+02 0.022 25.8 17.6 66 35-100 141-230 (496)
407 2g8s_A Glucose/sorbosone dehyd 22.6 2.2E+02 0.0074 27.6 8.0 49 33-81 18-76 (353)
408 3s25_A Hypothetical 7-bladed b 22.5 4E+02 0.014 25.1 9.7 93 2-102 63-178 (302)
409 1ijq_A LDL receptor, low-densi 22.5 4.8E+02 0.016 24.4 25.6 91 11-102 8-110 (316)
410 3sbq_A Nitrous-oxide reductase 21.7 1.9E+02 0.0066 30.5 7.4 67 35-101 325-409 (638)
411 2vgl_B AP-2 complex subunit be 21.5 2.7E+02 0.0094 29.1 9.1 92 419-521 216-311 (591)
412 2agh_C Zinc finger protein HRX 21.1 92 0.0032 17.9 2.7 15 239-253 9-23 (31)
413 1bpo_A Protein (clathrin); cla 20.5 6.9E+02 0.024 25.5 19.5 89 12-100 124-235 (494)
No 1
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=100.00 E-value=9.7e-71 Score=556.16 Aligned_cols=373 Identities=27% Similarity=0.436 Sum_probs=249.9
Q ss_pred eCCCCceeeecccCCCeEEEEecCCCeE-EEEEecccceEEEeCcEeeCC-CCCCCceeecCcccCcEEEEEcCCCCeee
Q 008510 133 DLPGLEALQIPGTNAGQTKVVREGDNGV-AYSWDMKEQKWDKLGEVVDGP-DDGMNRPILDGIQYDYVFDVDIGDGEPTR 210 (563)
Q Consensus 133 d~~~~~~l~~~g~~dg~~~l~~~~~~~~-~~~wd~~~~~w~~~g~v~~~~-~~~~~~~~~~g~~~d~v~~vd~~dg~~~~ 210 (563)
|+|+.+.+..+|++||+++|++.+++.+ +|+|+ .+.|.++|+|+++. ..+.+|..|+|++|||||+||++||.|++
T Consensus 33 ~lp~~e~l~~~G~~~Gq~~~v~~~~g~v~ay~ws--~~~W~~iG~Vv~~~~~~~~~k~~~~Gk~YDyvf~Vdi~~g~p~l 110 (425)
T 3pst_A 33 GSSPYEILQSPGRKEGQIVVVKSPQGTIEAHQFS--NSSWKKVGDVVGAGATGNDKKIEFEGKTYDYVFDVDIEDGKPPL 110 (425)
T ss_dssp -------------------------------------------------------CCEEETTEEESEEEEECCSTTCCCE
T ss_pred CCCCHHHhcCCCCCCCeEEEEECCCCCEEEEEEc--CCceeEEeEEecCCCCCCCCceeecCcccceEEEEEcCCCCccc
Confidence 3999999998999999999999765555 99999 48999999999863 33458999999999999999999999999
Q ss_pred eecCCCCCChhHHHHHHHHhcCCCcccHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceee
Q 008510 211 KLPYNRSDNPYDAADKWLLKENLPFSYRQQIVEFILQNTGQKDFTLNTSFRDPYTGASAYVPGQPSSMSAIPAKPTFKHI 290 (563)
Q Consensus 211 ~~~~n~~~~~w~~a~~f~~~~~l~~~~~~~v~~fi~~n~~~~~~~~~~~~~~p~~~~~~y~p~~~~~~~~~~~~~~~~~~ 290 (563)
++|||.++|||.+|++||.+|+||++|+|||++||++|++|++.+ +||++ +.|++.+ .+..+.+++|
T Consensus 111 kLpyN~~~np~~~A~~Fi~~~~L~~~y~~qi~~FI~~N~~~~~~~------~p~~~---~~~~~~~----~~~~~~~k~l 177 (425)
T 3pst_A 111 KLPINVSDNPYTAADNFLARYELPMSYRDQVVQLILKNTNGISLD------QPNDN---ASSSAVS----PSKTSVMKVL 177 (425)
T ss_dssp EEEECTTCCHHHHHHHHHHHHTCCGGGHHHHHHHHHHHC------------------------------------CCSSC
T ss_pred cCCccCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCcccC------CCCCC---CCCCCCC----cccCCCCccc
Confidence 999999999999999999999999999999999999999987632 45543 2233221 2234568999
Q ss_pred eccceEEecccChHHHHHHHHHHHHhhhcccccccCCCCHHHHHHHHHHHHHhhcCCCccCCCCchhhHHHHHHHHhcCC
Q 008510 291 PKKGMLIFDAAQFDGILKKIMEFNNALLFDLEKKNLSMSELETSRVAAVVKILKDTSHYHCSSFADVDISLLLKLLKTWP 370 (563)
Q Consensus 291 P~~~~~~f~~~n~~~l~~Kl~efn~~~~~~~~~~~~~l~~~el~~l~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~Wp 370 (563)
|+++|++|+++|+++|++||+|||++. .+|+|+|+..|.+++..+..+. ...+..+.+++.+||
T Consensus 178 P~~~yl~f~~~n~~~i~~kl~efN~~~--------~~ls~~el~~l~~~l~~~~~~~--------~~l~~~~~kil~~WP 241 (425)
T 3pst_A 178 PVKQYLIMENYNPDTILNGIVKINSNE--------KTFDDEILAQIGGALHDIDESW--------ELLLSFANTIRSNWE 241 (425)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHTSGGGSH--------HHHHHHHHHHHHHCS
T ss_pred CccceeeeecCCHHHHHHHHHHhcccc--------cCCCHHHHHHHHHHhccccccH--------HHHHHHHHHHHHhCC
Confidence 999999999999999999999999872 4899999999999886432110 123334569998999
Q ss_pred CCCccchhcHHHHhhcCCCchhhhhhcccchhhHHHHHHHhhcCCCCCcchHHHHHHHHHhhcCCCcc-HHHHHhh--HH
Q 008510 371 PAMIFPVIDILRMTILHPDGASLLLKHVENQNDVLMEMIEKVSSNPTLPANLLTGIRAVTNLFKNSSW-YSWLQKN--RS 447 (563)
Q Consensus 371 ~~~~fP~lDL~Rl~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~lR~l~N~f~~~~~-~~~~~~~--~~ 447 (563)
.+||+|||+||+++||++++.+ ..++..... +..++|+||++|++||||.++.+ ++++.++ +.
T Consensus 242 --~~FPaLDLLRl~v~~p~~~~~l-----------~~li~~~l~-~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~ 307 (425)
T 3pst_A 242 --IKTPAYDIVRLIVKKLPYSSDI-----------KDYIEEGLG-NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYK 307 (425)
T ss_dssp --CCHHHHHHHHHHGGGCSCGGGG-----------HHHHHHHTT-CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHH
T ss_pred --cccHHHHHHHHHHcCCchHHHH-----------HHHHHHhcC-CCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHH
Confidence 6999999999999999986533 335555544 34679999999999999999995 5555443 67
Q ss_pred HHHHHhhhhc----cCCChhHHHHHHHHHHHHHhhhhhcCCchhhhHHHHHHHHhhh-----h--cccChhHHHHHHHHH
Q 008510 448 EILDAFSSCY----SSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAALEIAE-----E--ESIEVDSKYRALVAI 516 (563)
Q Consensus 448 ~il~~~~~~~----~~~~k~~~~a~atl~~N~s~~~~~~~~~~~~~~l~~~~~~~l~-----~--~~~~~Ea~~R~l~Al 516 (563)
.+++.+...+ ...|||+|+|+|||+||||+++++.+.+ .++++.+.++|. . +++|+||+||+||||
T Consensus 308 ~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~~---~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVAL 384 (425)
T 3pst_A 308 SIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSD---LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAY 384 (425)
T ss_dssp HHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCSC---TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccch---HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHH
Confidence 7777775443 3458999999999999999999986543 456666666665 2 246999999999999
Q ss_pred hhhhc-hhHHHHHhhhcChHHHHHHHhh--cCChhHHHHHHHH
Q 008510 517 GTLML-EGLVKKIALDFDVGNIARVAKA--SKETKIAEVGADI 556 (563)
Q Consensus 517 G~l~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~ei 556 (563)
|||++ ++++++.++. ..|+++++. +.|+||+++++||
T Consensus 385 GtLv~~~~~~~~~a~~---~~~~~~~~~~~~~e~R~~~v~~ei 424 (425)
T 3pst_A 385 GNLATVEPTLRQFANS---VTWLANIKRSYGNVPRFKDIFDDL 424 (425)
T ss_dssp HHHHHHCHHHHHHHTT---CHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHhcC---HHHHHHHHHhcccchHHHHHHHhc
Confidence 99999 6688888875 367777765 5899999999998
No 2
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.6e-67 Score=521.50 Aligned_cols=343 Identities=27% Similarity=0.435 Sum_probs=248.6
Q ss_pred EEecccceEEEeCcEeeCC-CCCCCceeecCcccCcEEEEEcCCCCeeeeecCCCCCChhHHHHHHHHhcCCCcccHHHH
Q 008510 163 SWDMKEQKWDKLGEVVDGP-DDGMNRPILDGIQYDYVFDVDIGDGEPTRKLPYNRSDNPYDAADKWLLKENLPFSYRQQI 241 (563)
Q Consensus 163 ~wd~~~~~w~~~g~v~~~~-~~~~~~~~~~g~~~d~v~~vd~~dg~~~~~~~~n~~~~~w~~a~~f~~~~~l~~~~~~~v 241 (563)
+|+ .++|.++|+|+++. ....+|..|+|++|||||+||++||.|++++|||.++|||.+|++||++|+||++|+|||
T Consensus 1 qw~--~~~W~~iG~vv~~~~~~~~~k~~~~g~~yDyvf~vdi~~g~~~~klpyN~~~np~~~A~~F~~~~~l~~~y~~~i 78 (362)
T 3l3f_X 1 QFS--NSSWKKVGDVVGAGATGNDKKIEFEGKTYDYVFDVDIEDGKPPLKLPINVSDNPYTAADNFLARYELPMSYRDQV 78 (362)
T ss_dssp ------------------------CCEEETTEEESEEEEECCSTTSCCEEEEECTTSCHHHHHHHHHHHTTCCGGGHHHH
T ss_pred CCC--CCcceEeEEEECCCCCCCCCceeecCcccceEEEEEcCCCCccccCCCcCCCCHHHHHHHHHHHcCCCHHHHHHH
Confidence 577 69999999999863 334589999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeeeccceEEecccChHHHHHHHHHHHHhhhccc
Q 008510 242 VEFILQNTGQKDFTLNTSFRDPYTGASAYVPGQPSSMSAIPAKPTFKHIPKKGMLIFDAAQFDGILKKIMEFNNALLFDL 321 (563)
Q Consensus 242 ~~fi~~n~~~~~~~~~~~~~~p~~~~~~y~p~~~~~~~~~~~~~~~~~~P~~~~~~f~~~n~~~l~~Kl~efn~~~~~~~ 321 (563)
++||++|++|++.+ +||++ +.|++.+ .++.+.+++||+++|++|+++|+++|++||+|||++.
T Consensus 79 ~~fi~~n~~~~~~~------~p~~~---~~~~~~~----~~~~~~~k~lP~~~yl~f~~~n~~~i~~kl~efN~~~---- 141 (362)
T 3l3f_X 79 VQFILKNTNGISLD------QPNDN---ASSSAVS----PSKTSVMKVLPVKQYLIMENYNPDTIFNGIVKINSNE---- 141 (362)
T ss_dssp HHHHHHHCC-------------------------------------CSCCCCCCCCCCCCCHHHHHHHHHHHHHHH----
T ss_pred HHHHHhcCCCcccC------CCCCC---CCCCCCC----CCCCCCCCcCCccceeeeccCCHHHHHHHHHHHcccc----
Confidence 99999999987632 45543 2233211 2234568999999999999999999999999999872
Q ss_pred ccccCCCCHHHHHHHHHHHHHhhcCCCccCCCCchhhHHHHHHHHhcCCCCCccchhcHHHHhhcCCCchhhhhhcccch
Q 008510 322 EKKNLSMSELETSRVAAVVKILKDTSHYHCSSFADVDISLLLKLLKTWPPAMIFPVIDILRMTILHPDGASLLLKHVENQ 401 (563)
Q Consensus 322 ~~~~~~l~~~el~~l~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~Wp~~~~fP~lDL~Rl~~l~~~~~~~~~~~~~~~ 401 (563)
.+|+|+|+..|.+++..++. -....+.++.+++.+|| .+||+|||+||+++||++++++
T Consensus 142 ----~~ls~~el~~l~~~l~~~~~--------~~~~l~~~~~~i~~~Wp--~~FP~LDLLRl~v~~~~~~~~l------- 200 (362)
T 3l3f_X 142 ----KTFDDEILAQIGGALHDIDE--------SWELLLSFANTIRSNWE--IKTPAYDIVRLIVKKLPYSSDI------- 200 (362)
T ss_dssp ----CCSCHHHHHHHHHHHTCTTT--------CHHHHHHHHHHHHHHCS--CCHHHHHHHHHHGGGCSCGGGG-------
T ss_pred ----cCCCHHHHHHHHHHHhcccc--------cHHHHHHHHHHHHhhCC--ccchHHHHHHHHhcCCChHHHH-------
Confidence 48999999999998753221 11223444569898999 4999999999999999987644
Q ss_pred hhHHHHHHHhhcCCCCCcchHHHHHHHHHhhcCCCcc-HHHHHhh--HHHHHHHhhhh----ccCCChhHHHHHHHHHHH
Q 008510 402 NDVLMEMIEKVSSNPTLPANLLTGIRAVTNLFKNSSW-YSWLQKN--RSEILDAFSSC----YSSSNKNVQLSYSTLILN 474 (563)
Q Consensus 402 ~~~~~~~l~~~~~~~~~~~~~ll~lR~l~N~f~~~~~-~~~~~~~--~~~il~~~~~~----~~~~~k~~~~a~atl~~N 474 (563)
..++..+.. +..++|+||++|++||||.|+.+ ++++.++ +..+++.+... +.+.|||+|+|+|||+||
T Consensus 201 ----~~li~~~~~-~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~~~~~~~~~nkNl~IA~ATL~lN 275 (362)
T 3l3f_X 201 ----KDYIEEGLG-NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFN 275 (362)
T ss_dssp ----HHHHHHHTT-CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCSSCCHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHhcC-CCChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHH
Confidence 334544444 34679999999999999999995 5566444 56677776544 334589999999999999
Q ss_pred HHhhhhhcCCchhhhHHHHHHHHhhh-----hc--ccChhHHHHHHHHHhhhhc-hhHHHHHhhhcChHHHHHHHhh--c
Q 008510 475 YAVLLIEKKDEEGQSHVLSAALEIAE-----EE--SIEVDSKYRALVAIGTLML-EGLVKKIALDFDVGNIARVAKA--S 544 (563)
Q Consensus 475 ~s~~~~~~~~~~~~~~l~~~~~~~l~-----~~--~~~~Ea~~R~l~AlG~l~~-~~~~~~~~~~~~~~~~~~~~~~--~ 544 (563)
||+++++.+.+ .++++.+.++|. .| ++|+||+||+|||||||++ ++.+++.++. ..|+++++. +
T Consensus 276 lAv~~~~~~~~---~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~~~~~~~~a~~---~~~~~~~~~~~~ 349 (362)
T 3l3f_X 276 YSALVTKGNSD---LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPTLRQFANS---VTWLANIKRSYG 349 (362)
T ss_dssp HHHHHHHTCSC---TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCHHHHHTGGG---CHHHHHHHHHHT
T ss_pred HHHHHhcccch---HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCHHHHHHhcC---HHHHHHHHHhcc
Confidence 99999986543 455566666665 22 4699999999999999999 6688888875 367777765 5
Q ss_pred CChhHHHHHHHH
Q 008510 545 KETKIAEVGADI 556 (563)
Q Consensus 545 ~~~~i~~~~~ei 556 (563)
.|+||+++++||
T Consensus 350 ~e~R~~~v~~ei 361 (362)
T 3l3f_X 350 NVPRFKDIFDDL 361 (362)
T ss_dssp TSHHHHHHHHHT
T ss_pred cchHHHHHHHhc
Confidence 899999999997
No 3
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=100.00 E-value=1.8e-57 Score=450.21 Aligned_cols=283 Identities=26% Similarity=0.381 Sum_probs=229.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeeeccceEEecccChHHHHHHHHHHHHhhhcccccccCCCCHHHHHHH
Q 008510 257 NTSFRDPYTGASAYVPGQPSSMSAIPAKPTFKHIPKKGMLIFDAAQFDGILKKIMEFNNALLFDLEKKNLSMSELETSRV 336 (563)
Q Consensus 257 ~~~~~~p~~~~~~y~p~~~~~~~~~~~~~~~~~~P~~~~~~f~~~n~~~l~~Kl~efn~~~~~~~~~~~~~l~~~el~~l 336 (563)
++.+.|||||++||+||++++ .++|||+++|++|+++|+++|++||+|||++++ .+.+|+|+|+..|
T Consensus 19 ~~~~~Dp~~~~~~y~p~~~~~--------~~k~~P~~~yl~f~~an~~~i~~KL~EfN~~~~-----~~~~Ls~~el~~L 85 (304)
T 3ebb_A 19 SMAGVDPFTGNSAYRSAASKT--------MNIYFPKKEAVTFDQANPTQILGKLKELNGTAP-----EEKKLTEDDLILL 85 (304)
T ss_dssp -----------------------------CCSSCCCCSCCCCCCCCHHHHHHHHHHHHTTSC-----GGGCCCHHHHHHH
T ss_pred CCCCCCCCCCCCCcCCCCCCC--------CCCcCCCccceehhccCHHHHHHHHHHHHHccc-----cccCcCHHHHHHH
Confidence 445889999999999998533 489999999999999999999999999999863 4678999999999
Q ss_pred HHHHHHhhcCCCccCCCCchhhHHHHHHHHhcCCCCCccchhcHHHHhhcCCCchhhhhhcccchhhHHH-HHHHhhcCC
Q 008510 337 AAVVKILKDTSHYHCSSFADVDISLLLKLLKTWPPAMIFPVIDILRMTILHPDGASLLLKHVENQNDVLM-EMIEKVSSN 415 (563)
Q Consensus 337 ~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~Wp~~~~fP~lDL~Rl~~l~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~ 415 (563)
++++..|++++ +..+...+++++.+++ .||.+.+||+|||+|++++||+++.+|+. +..+..+. .++... .+
T Consensus 86 ~~l~~~l~~~s---~~~~~~~~l~~l~kil-~WP~~~~fPvLDLlRl~~l~p~~~~~~~~--~~~~~~l~~~l~~~~-~~ 158 (304)
T 3ebb_A 86 EKILSLICNSS---SEKPTVQQLQILWKAI-NCPEDIVFPALDILRLSIKHPSVNENFCN--EKEGAQFSSHLINLL-NP 158 (304)
T ss_dssp HHHHHHHHTTC---SSCCCHHHHHHHHHHH-TSCTTTCHHHHHHHHHHTTSHHHHHHHHS--TTTHHHHHHHHHHTT-CT
T ss_pred HHHHHHHhccC---CCccchHHHHHHHHHH-cCCHHhHHHHHHHHHHHHcCccHHHHhhc--cccchHHHHHHHHhc-CC
Confidence 99999998654 3456777899999998 99999999999999999999999999973 22334444 455443 34
Q ss_pred CCCcchHHHHHHHHHhhcCCCccHHHHHhhHHHHHHHhhhhccCCChhHHHHHHHHHHHHHhhhhhcCCchhhhHHHHHH
Q 008510 416 PTLPANLLTGIRAVTNLFKNSSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAA 495 (563)
Q Consensus 416 ~~~~~~~ll~lR~l~N~f~~~~~~~~~~~~~~~il~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~~~~~~~~l~~~~ 495 (563)
+..|+|+||++|++||||.++.+++++++++++|++.+..++.+.|||+|+|+||++||||+++++.++.+...++++.+
T Consensus 159 ~~~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l 238 (304)
T 3ebb_A 159 KGKPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLI 238 (304)
T ss_dssp TSCHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHH
Confidence 55788999999999999999999999999999999999999888899999999999999999999988766677777777
Q ss_pred HHhhhhcccChhHHHHHHHHHhhhhc-hhHHHHHhhhcChHHHHHHHhh-cCChhHHHHHHHHHHHh
Q 008510 496 LEIAEEESIEVDSKYRALVAIGTLML-EGLVKKIALDFDVGNIARVAKA-SKETKIAEVGADIELLA 560 (563)
Q Consensus 496 ~~~l~~~~~~~Ea~~R~l~AlG~l~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~ei~~ll 560 (563)
.++++ +++|+|++||+|+|||||++ ++++.++++.+|+.++++++++ ++++||+||++.|+.+|
T Consensus 239 ~~il~-~~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~~v~~~~~~~~~~kv~~~~~~~~~~l 304 (304)
T 3ebb_A 239 STILE-VVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSSVSEPAKVSECCRFILNLL 304 (304)
T ss_dssp HHHHT-TCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHGGGGGGCCSSHHHHHHHHHHHTTC
T ss_pred HHHHh-ccCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHHHHHHHHhCCCchhHHHHHHHHHHhC
Confidence 77665 56799999999999999999 7799999999999999998887 57899999999998764
No 4
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.3e-43 Score=339.77 Aligned_cols=234 Identities=19% Similarity=0.287 Sum_probs=185.1
Q ss_pred ceeeeccceEEecccChHHHHHHHHHHHHhhhcccccccCCCCHHHHHHHHHHHHHhhcCCCccCCCCchhhHHHHHHHH
Q 008510 287 FKHIPKKGMLIFDAAQFDGILKKIMEFNNALLFDLEKKNLSMSELETSRVAAVVKILKDTSHYHCSSFADVDISLLLKLL 366 (563)
Q Consensus 287 ~~~~P~~~~~~f~~~n~~~l~~Kl~efn~~~~~~~~~~~~~l~~~el~~l~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l 366 (563)
+|+||+++|++|+++|+++|++||+|||++. .+|+|+|+..|++++..++.+. ...+..+.+++
T Consensus 2 ~k~lP~~~yl~f~~~n~~~i~~Kl~efN~~~--------~~ls~~el~~l~~~l~~l~~~~--------~~~~~~~~ki~ 65 (253)
T 3gae_A 2 MKVLPVKQYLIMENYNPDTIFNGIVKINSNE--------KTFDDEILAQIGGALHDIDESW--------ELLLSFANTIR 65 (253)
T ss_dssp CSSCSCCSCCCCCCCCHHHHHHHHHHHHHHH--------CCSCHHHHHHHHHHHTCHHHHH--------HHHHHHHHHHH
T ss_pred CcccCCcceeeeecCCHHHHHHHHHHHHhcc--------CCCCHHHHHHHHHHHhcccccH--------HHHHHHHHHHH
Confidence 5899999999999999999999999999873 3899999999999886443111 12334466999
Q ss_pred hcCCCCCccchhcHHHHhhcCCCchhhhhhcccchhhHHHHHHHhhcCCCCCcchHHHHHHHHHhhcCCCc-cHHHHHhh
Q 008510 367 KTWPPAMIFPVIDILRMTILHPDGASLLLKHVENQNDVLMEMIEKVSSNPTLPANLLTGIRAVTNLFKNSS-WYSWLQKN 445 (563)
Q Consensus 367 ~~Wp~~~~fP~lDL~Rl~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~lR~l~N~f~~~~-~~~~~~~~ 445 (563)
.+|| .+||++||+|++++||++++.++ .++..+.. +..++|+||++|++||+|.|+. |++++.++
T Consensus 66 ~~WP--~~fP~lDllRl~~~~~~~~~~l~-----------~~l~~~~~-~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~ 131 (253)
T 3gae_A 66 SNWE--IKTPAYDIVRLIVKKLPYSSDIK-----------DYIEEGLG-NKNITLTMLTVRILVNCFNNENWGVKLLESN 131 (253)
T ss_dssp HHCS--CCHHHHHHHHHHGGGCSCGGGGH-----------HHHHHHTT-CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSH
T ss_pred HhCC--ccchHHHHHHHHHcCCchHHHHH-----------HHHHHhcC-CCchhHHHHHHHHHHHcccCCchHHHHHhcc
Confidence 8999 79999999999999999877554 24444443 3467899999999999999999 78888777
Q ss_pred --HHHHHHHhhhhc----cCCChhHHHHHHHHHHHHHhhhhhcCCchhhhHHHHHHHHhhhh----c---ccChhHHHHH
Q 008510 446 --RSEILDAFSSCY----SSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAALEIAEE----E---SIEVDSKYRA 512 (563)
Q Consensus 446 --~~~il~~~~~~~----~~~~k~~~~a~atl~~N~s~~~~~~~~~~~~~~l~~~~~~~l~~----~---~~~~Ea~~R~ 512 (563)
+..+++.+...+ .+.|||+|+|+||++||||+++++.+.+ .+++..+.+++.. . ++|+||+||+
T Consensus 132 ~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~~---~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~ 208 (253)
T 3gae_A 132 QVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSD---LELLPIVADAINTKYGPLEEYQECEEAAYRL 208 (253)
T ss_dssp HHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCSC---TTHHHHHHHHHHTTTTTSHHHHHSHHHHHHH
T ss_pred hhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccch---HHHHHHHHHHHHHHhcccccccCCHHHHHHH
Confidence 677777775543 2359999999999999999999986542 3334444444432 2 4589999999
Q ss_pred HHHHhhhhc-hhHHHHHhhhcChHHHHHHHhh--cCChhHHHHHHHH
Q 008510 513 LVAIGTLML-EGLVKKIALDFDVGNIARVAKA--SKETKIAEVGADI 556 (563)
Q Consensus 513 l~AlG~l~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~ei 556 (563)
|+|||||++ ++.++++++. ..|++++++ +.|+||+++++||
T Consensus 209 LvAlGtL~~~~~~~~~~a~~---~~~~~~~~~~~~~e~R~~~v~~ei 252 (253)
T 3gae_A 209 TVAYGNLATVEPTLRQFANS---VTWLANIKRSYGNVPRFKDIFDDL 252 (253)
T ss_dssp HHHHHHHHHHSGGGGCCTTT---CHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHhcc---HHHHHHHHHHcccchHHHHHHHhc
Confidence 999999999 6678878775 367766654 5899999999998
No 5
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=99.92 E-value=5.1e-24 Score=217.99 Aligned_cols=207 Identities=19% Similarity=0.202 Sum_probs=153.9
Q ss_pred CCCEEEEEECCCcEEEEcC-CCceeEE----EecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCc
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVLME----MVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGC 72 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~----l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~ 72 (563)
+++.|++|+.||+||+||+ +++++.. +.+|.+.|++++|+|+| .+++|+.|++|++|| ++++++++. |.+.
T Consensus 92 ~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~ 171 (344)
T 4gqb_B 92 GERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQ 171 (344)
T ss_dssp TTTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC
T ss_pred CCCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCc
Confidence 3568999999999999999 6765443 45999999999999999 999999999999999 888999998 9999
Q ss_pred EEEEEEccCCc--EEEEeCCCcEEEEEcCCCceeceeeecccccc---------cceeEEeeccCCceEEEeCCCCceee
Q 008510 73 VWDAKFLENGD--IVTACSDGVTRIWTVHSDKVADSLELEAYASE---------LSQYKLCRKKVGGLKLEDLPGLEALQ 141 (563)
Q Consensus 73 V~~v~~~p~g~--i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~---------v~~~~~~~~~~~~i~~~d~~~~~~l~ 141 (563)
|++++|+|++. +++|+.|++|++||+++++.........+... -..+.+++..++.|++||++..+.+.
T Consensus 172 V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~ 251 (344)
T 4gqb_B 172 VTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVL 251 (344)
T ss_dssp EEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCE
T ss_pred eEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEE
Confidence 99999999885 78999999999999998875443322221111 12345577889999999998776544
Q ss_pred ec-ccCCCeEEEEecCC----------CeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCe-
Q 008510 142 IP-GTNAGQTKVVREGD----------NGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEP- 208 (563)
Q Consensus 142 ~~-g~~dg~~~l~~~~~----------~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~- 208 (563)
.. +|.+....+.++++ ++.+++||...+. ...+.||. +.|.++.| ++|..
T Consensus 252 ~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~----------------~~~~~~H~-~~V~~v~~sp~~~~l 314 (344)
T 4gqb_B 252 SSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSE----------------LFRSQAHR-DFVRDATWSPLNHSL 314 (344)
T ss_dssp EEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCE----------------EEEECCCS-SCEEEEEECSSSTTE
T ss_pred EEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCc----------------EEEEcCCC-CCEEEEEEeCCCCeE
Confidence 32 55544444444433 2334556654432 12245666 88999999 78875
Q ss_pred eeeecCCCCCChhHHHH
Q 008510 209 TRKLPYNRSDNPYDAAD 225 (563)
Q Consensus 209 ~~~~~~n~~~~~w~~a~ 225 (563)
+++.++|+++..|++.+
T Consensus 315 las~s~D~~v~~w~v~~ 331 (344)
T 4gqb_B 315 LTTVGWDHQVVHHVVPT 331 (344)
T ss_dssp EEEEETTSCEEEEECCC
T ss_pred EEEEcCCCeEEEEECCC
Confidence 56899999999999753
No 6
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=99.91 E-value=1.7e-22 Score=202.54 Aligned_cols=205 Identities=13% Similarity=0.097 Sum_probs=161.6
Q ss_pred CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEEE
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDA 76 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~v 76 (563)
+|.++++|+.||+|++||+ ++++++.+.+|...|.+++|+|++ .+++|+.|++|++|| +++++..+. |++.|+++
T Consensus 24 ~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~ 103 (304)
T 2ynn_A 24 TEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSI 103 (304)
T ss_dssp SSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred CCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEE
Confidence 5789999999999999999 889999999999999999999999 999999999999999 788888888 99999999
Q ss_pred EEccCCc-EEEEeCCCcEEEEEcCCCceeceeeeccccccc---------ceeEEeeccCCceEEEeCCCCceeeec--c
Q 008510 77 KFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASEL---------SQYKLCRKKVGGLKLEDLPGLEALQIP--G 144 (563)
Q Consensus 77 ~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v---------~~~~~~~~~~~~i~~~d~~~~~~l~~~--g 144 (563)
+|+|++. +++|+.|++|++||++++... ...+..|...+ ....+++..|+.|++||+......... +
T Consensus 104 ~~~~~~~~l~sgs~D~~v~lWd~~~~~~~-~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~ 182 (304)
T 2ynn_A 104 AVHPTKPYVLSGSDDLTVKLWNWENNWAL-EQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTG 182 (304)
T ss_dssp EECSSSSEEEEEETTSCEEEEEGGGTTEE-EEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECC
T ss_pred EEcCCCCEEEEECCCCeEEEEECCCCcch-hhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccC
Confidence 9999998 999999999999999877422 12233333322 235667788999999999654322111 2
Q ss_pred c------------CCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeee
Q 008510 145 T------------NAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRK 211 (563)
Q Consensus 145 ~------------~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~ 211 (563)
+ +++.+.+..+.| +.+.+||...+... ..+.||. +.|..+.+ +++..+++
T Consensus 183 ~~~~v~~~~~~~~~~~~~l~s~s~D-~~i~iWd~~~~~~~---------------~~~~~h~-~~v~~~~~~p~~~~l~s 245 (304)
T 2ynn_A 183 QERGVNYVDYYPLPDKPYMITASDD-LTIKIWDYQTKSCV---------------ATLEGHM-SNVSFAVFHPTLPIIIS 245 (304)
T ss_dssp CTTCEEEEEECCSTTCCEEEEEETT-SEEEEEETTTTEEE---------------EEEECCS-SCEEEEEECSSSSEEEE
T ss_pred CcCcEEEEEEEEcCCCCEEEEEcCC-CeEEEEeCCCCccc---------------eeeCCCC-CCEEEEEECCCCCEEEE
Confidence 2 244444444444 66778887665322 2355665 67899999 89999999
Q ss_pred ecCCCCCChhHHH
Q 008510 212 LPYNRSDNPYDAA 224 (563)
Q Consensus 212 ~~~n~~~~~w~~a 224 (563)
++.|+.+++|+..
T Consensus 246 ~s~Dg~i~iWd~~ 258 (304)
T 2ynn_A 246 GSEDGTLKIWNSS 258 (304)
T ss_dssp EETTSCEEEEETT
T ss_pred EcCCCeEEEEECC
Confidence 9999999999975
No 7
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=99.90 E-value=1.4e-22 Score=212.33 Aligned_cols=204 Identities=22% Similarity=0.292 Sum_probs=162.8
Q ss_pred CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEEE
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDA 76 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~v 76 (563)
++.++++||.||+|++||+ +++++.++.+|.+.|.+++|+|+| .+++|+.|++|++|| ++++++++. |...|+++
T Consensus 119 ~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v 198 (410)
T 1vyh_C 119 VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSV 198 (410)
T ss_dssp SSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEE
T ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEE
Confidence 4689999999999999999 899999999999999999999999 999999999999999 778888887 88999999
Q ss_pred EEccCCc-EEEEeCCCcEEEEEcCCCceeceeeeccccccc--------ceeEEeeccCCceEEEeCCCCceeeec-cc-
Q 008510 77 KFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASEL--------SQYKLCRKKVGGLKLEDLPGLEALQIP-GT- 145 (563)
Q Consensus 77 ~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v--------~~~~~~~~~~~~i~~~d~~~~~~l~~~-g~- 145 (563)
+|+|+|+ +++|+.|++|++||++++++... +..+...+ ....+++..++.|++||+...+..... ++
T Consensus 199 ~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~--~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~ 276 (410)
T 1vyh_C 199 SIMPNGDHIVSASRDKTIKMWEVQTGYCVKT--FTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHR 276 (410)
T ss_dssp EECSSSSEEEEEETTSEEEEEETTTCCEEEE--EECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCS
T ss_pred EEeCCCCEEEEEeCCCeEEEEECCCCcEEEE--EeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCC
Confidence 9999998 99999999999999999875432 33333322 245667888999999999876543322 22
Q ss_pred ---------CC--------------------CeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccC
Q 008510 146 ---------NA--------------------GQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYD 196 (563)
Q Consensus 146 ---------~d--------------------g~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d 196 (563)
++ |.+.+..+.| +.+.+||...+... ..+.||. +
T Consensus 277 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D-~~i~iwd~~~~~~~---------------~~~~~h~-~ 339 (410)
T 1vyh_C 277 HVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRD-KTIKMWDVSTGMCL---------------MTLVGHD-N 339 (410)
T ss_dssp SCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETT-SEEEEEETTTTEEE---------------EEEECCS-S
T ss_pred ceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCC-CeEEEEECCCCceE---------------EEEECCC-C
Confidence 22 3344444444 66778887665321 2345665 7
Q ss_pred cEEEEEc-CCCCeeeeecCCCCCChhHHH
Q 008510 197 YVFDVDI-GDGEPTRKLPYNRSDNPYDAA 224 (563)
Q Consensus 197 ~v~~vd~-~dg~~~~~~~~n~~~~~w~~a 224 (563)
.|.++.+ ++|..+++++.|+.+++|+..
T Consensus 340 ~v~~v~~~~~g~~l~s~s~D~~i~vwd~~ 368 (410)
T 1vyh_C 340 WVRGVLFHSGGKFILSCADDKTLRVWDYK 368 (410)
T ss_dssp CEEEEEECSSSSCEEEEETTTEEEEECCT
T ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence 8999999 899999999999999999874
No 8
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=99.90 E-value=2.5e-22 Score=210.34 Aligned_cols=203 Identities=23% Similarity=0.374 Sum_probs=160.7
Q ss_pred CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEEE
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDA 76 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~v 76 (563)
+|++|++||.|++|++||+ +++++.++.+|...|.+++|+|++ .+++|+.|++|++|| ++.++.++. |...|.++
T Consensus 161 ~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~ 240 (410)
T 1vyh_C 161 SGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMV 240 (410)
T ss_dssp TSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred CCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEE
Confidence 4789999999999999999 789999999999999999999999 999999999999999 888999998 88899999
Q ss_pred EEccCCc-EEEEeCCCcEEEEEcCCCceeceeeeccccccc----------------------------ceeEEeeccCC
Q 008510 77 KFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASEL----------------------------SQYKLCRKKVG 127 (563)
Q Consensus 77 ~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v----------------------------~~~~~~~~~~~ 127 (563)
+++|+|. +++|+.|++|++||+++++.... +..+...+ ..+.+++..++
T Consensus 241 ~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~--~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~ 318 (410)
T 1vyh_C 241 RPNQDGTLIASCSNDQTVRVWVVATKECKAE--LREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDK 318 (410)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTTCCEEEE--ECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTS
T ss_pred EECCCCCEEEEEcCCCeEEEEECCCCceeeE--ecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCC
Confidence 9999999 89999999999999998864322 22222111 23567788899
Q ss_pred ceEEEeCCCCceeeec-cc----------CCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccC
Q 008510 128 GLKLEDLPGLEALQIP-GT----------NAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYD 196 (563)
Q Consensus 128 ~i~~~d~~~~~~l~~~-g~----------~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d 196 (563)
.|++||+.....+... +| ++|.+.+..+.| +.+++||...+. ....+.+|. +
T Consensus 319 ~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D-~~i~vwd~~~~~---------------~~~~~~~h~-~ 381 (410)
T 1vyh_C 319 TIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADD-KTLRVWDYKNKR---------------CMKTLNAHE-H 381 (410)
T ss_dssp EEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETT-TEEEEECCTTSC---------------CCEEEECCS-S
T ss_pred eEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCC-CeEEEEECCCCc---------------eEEEEcCCC-C
Confidence 9999999876554332 44 444444433333 555667654331 233456666 7
Q ss_pred cEEEEEc-CCCCeeeeecCCCCCChhHH
Q 008510 197 YVFDVDI-GDGEPTRKLPYNRSDNPYDA 223 (563)
Q Consensus 197 ~v~~vd~-~dg~~~~~~~~n~~~~~w~~ 223 (563)
.|.++.+ +++..+++++.|+++++|++
T Consensus 382 ~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 382 FVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp CEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred cEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 8999999 89999999999999999975
No 9
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.89 E-value=1.6e-21 Score=196.93 Aligned_cols=211 Identities=20% Similarity=0.287 Sum_probs=157.4
Q ss_pred CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc-CCceeEEEe-cCCcEEEEE
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-DGVCVQSIE-HPGCVWDAK 77 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd-~~~~~~~l~-h~~~V~~v~ 77 (563)
+|+++++||.|++||+||+ +++++.++.+|...|.+++|+|++ .+++|+.|++|++|| .++++.++. |...|.+++
T Consensus 76 dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~ 155 (319)
T 3frx_A 76 DGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVR 155 (319)
T ss_dssp TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEE
T ss_pred CCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEEE
Confidence 5789999999999999999 899999999999999999999999 999999999999999 888888887 889999999
Q ss_pred EccC------Cc-EEEEeCCCcEEEEEcCCCceeceeeecccccccc--------eeEEeeccCCceEEEeCCCCceeee
Q 008510 78 FLEN------GD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELS--------QYKLCRKKVGGLKLEDLPGLEALQI 142 (563)
Q Consensus 78 ~~p~------g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~--------~~~~~~~~~~~i~~~d~~~~~~l~~ 142 (563)
+.|+ +. +++|+.|+.|++||+++.+... .+..|...+. ...+++..++.|++||+...+.+..
T Consensus 156 ~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~--~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~ 233 (319)
T 3frx_A 156 VVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEA--DFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYT 233 (319)
T ss_dssp ECCC------CCEEEEEETTSCEEEEETTTTEEEE--EECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEE
T ss_pred EccCCCCCCCccEEEEEeCCCEEEEEECCcchhhe--eecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEE
Confidence 9984 33 8999999999999999876432 2333433332 4556778899999999987765443
Q ss_pred c----------ccCCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeee
Q 008510 143 P----------GTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRK 211 (563)
Q Consensus 143 ~----------g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~ 211 (563)
. .+++|........++ +.+|+...+.... .+... ...+.......+.++.| +||+.+++
T Consensus 234 ~~~~~~v~~~~~sp~~~~la~~~~~~--i~v~~~~~~~~~~--~~~~~------~~~~~~~~~~~v~~~~~spdg~~l~s 303 (319)
T 3frx_A 234 LSAQDEVFSLAFSPNRYWLAAATATG--IKVFSLDPQYLVD--DLRPE------FAGYSKAAEPHAVSLAWSADGQTLFA 303 (319)
T ss_dssp EECCSCEEEEEECSSSSEEEEEETTE--EEEEEETTEEEEE--EECCC------CTTCCGGGCCCEEEEEECTTSSEEEE
T ss_pred ecCCCcEEEEEEcCCCCEEEEEcCCC--cEEEEeCcCeeee--ccCcc------ccccccCcCcceeEEEECCCCCEEEE
Confidence 3 344454444433332 3455544332111 11110 00011122367899999 99999999
Q ss_pred ecCCCCCChhHHH
Q 008510 212 LPYNRSDNPYDAA 224 (563)
Q Consensus 212 ~~~n~~~~~w~~a 224 (563)
++.|+.+++|++.
T Consensus 304 g~~Dg~i~vWd~~ 316 (319)
T 3frx_A 304 GYTDNVIRVWQVM 316 (319)
T ss_dssp EETTSCEEEEEEE
T ss_pred eecCceEEEEEEe
Confidence 9999999999874
No 10
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=99.88 E-value=3e-21 Score=196.66 Aligned_cols=202 Identities=18% Similarity=0.269 Sum_probs=160.5
Q ss_pred CCCEEEEEECCCcEEEEcC-CC----ceeEEEecCCCcEEEEEEcCCCeEEEEeCCCcEEEEc--CCceeEEEe-cCCcE
Q 008510 2 PGVGIISASHDCTIRLWAL-TG----QVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWK--DGVCVQSIE-HPGCV 73 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g----~~i~~l~gH~~~V~~v~~~p~g~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V 73 (563)
+|+++++|+.|++|++|++ ++ +....+.+|.+.|.++.|++++.+++++.|++|++|| +++++.++. |.+.|
T Consensus 108 ~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v 187 (340)
T 1got_B 108 SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDV 187 (340)
T ss_dssp TSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCE
T ss_pred CCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEcCCCCce
Confidence 5789999999999999998 33 4667889999999999999988999999999999999 788888888 99999
Q ss_pred EEEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccccc--------eeEEeeccCCceEEEeCCCCceee---
Q 008510 74 WDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELS--------QYKLCRKKVGGLKLEDLPGLEALQ--- 141 (563)
Q Consensus 74 ~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~--------~~~~~~~~~~~i~~~d~~~~~~l~--- 141 (563)
++++|+|++. +++|+.|++|++||+++++... .+..+...+. ...+++..++.|++||++....+.
T Consensus 188 ~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~--~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~ 265 (340)
T 1got_B 188 MSLSLAPDTRLFVSGACDASAKLWDVREGMCRQ--TFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS 265 (340)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTCSEEE--EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred EEEEECCCCCEEEEEeCCCcEEEEECCCCeeEE--EEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEc
Confidence 9999999998 8999999999999999887443 2333333332 455677889999999998654332
Q ss_pred ----------ecccCCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeee
Q 008510 142 ----------IPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTR 210 (563)
Q Consensus 142 ----------~~g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~ 210 (563)
...+++|.+.+..+.+ +.+++||...+. ....+.||. +.|.++.+ ++|..++
T Consensus 266 ~~~~~~~v~~~~~s~~g~~l~~g~~d-~~i~vwd~~~~~---------------~~~~~~~h~-~~v~~~~~s~dg~~l~ 328 (340)
T 1got_B 266 HDNIICGITSVSFSKSGRLLLAGYDD-FNCNVWDALKAD---------------RAGVLAGHD-NRVSCLGVTDDGMAVA 328 (340)
T ss_dssp CTTCCSCEEEEEECTTSSEEEEEETT-SEEEEEETTTCC---------------EEEEEECCS-SCEEEEEECTTSSCEE
T ss_pred cCCcccceEEEEECCCCCEEEEECCC-CeEEEEEcccCc---------------EeeEeecCC-CcEEEEEEcCCCCEEE
Confidence 2245666666655554 556788865432 122356666 77999999 9999999
Q ss_pred eecCCCCCChhH
Q 008510 211 KLPYNRSDNPYD 222 (563)
Q Consensus 211 ~~~~n~~~~~w~ 222 (563)
+++.|+.+++|+
T Consensus 329 s~s~D~~i~iWd 340 (340)
T 1got_B 329 TGSWDSFLKIWN 340 (340)
T ss_dssp EEETTSCEEEEC
T ss_pred EEcCCccEEecC
Confidence 999999999995
No 11
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=99.88 E-value=3.9e-21 Score=194.49 Aligned_cols=203 Identities=18% Similarity=0.262 Sum_probs=160.9
Q ss_pred CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEEE
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDA 76 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~v 76 (563)
++..+++||.|++|++||+ +++++..+.+|...+++++|+|++ .+++|+.|++|++|+ +++....+. |...|.++
T Consensus 91 ~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~ 170 (321)
T 3ow8_A 91 TLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSI 170 (321)
T ss_dssp SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEE
T ss_pred CCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEE
Confidence 4678999999999999999 899999999999999999999999 999999999999999 777777777 77799999
Q ss_pred EEccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccccc--------eeEEeeccCCceEEEeCCCCceeee-----
Q 008510 77 KFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELS--------QYKLCRKKVGGLKLEDLPGLEALQI----- 142 (563)
Q Consensus 77 ~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~--------~~~~~~~~~~~i~~~d~~~~~~l~~----- 142 (563)
+|+|+|+ +++|+.||.|++||+++++... .+..+...+. ...+++..++.|++||++.......
T Consensus 171 ~~spdg~~lasg~~dg~i~iwd~~~~~~~~--~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~ 248 (321)
T 3ow8_A 171 AYSPDGKYLASGAIDGIINIFDIATGKLLH--TLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHA 248 (321)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTTTEEEE--EECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCS
T ss_pred EECCCCCEEEEEcCCCeEEEEECCCCcEEE--EEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCC
Confidence 9999999 9999999999999999987543 2333433332 4556778899999999987654432
Q ss_pred ------cccCCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeeeecCC
Q 008510 143 ------PGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRKLPYN 215 (563)
Q Consensus 143 ------~g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n 215 (563)
..+++|...+..+.| +.+.+||..++... ..+.+|. +.|.++.+ ++|..+++.+.|
T Consensus 249 ~~v~~~~~sp~~~~l~s~s~D-~~v~iwd~~~~~~~---------------~~~~~h~-~~v~~v~~s~~g~~l~s~~~d 311 (321)
T 3ow8_A 249 SWVLNVAFCPDDTHFVSSSSD-KSVKVWDVGTRTCV---------------HTFFDHQ-DQVWGVKYNGNGSKIVSVGDD 311 (321)
T ss_dssp SCEEEEEECTTSSEEEEEETT-SCEEEEETTTTEEE---------------EEECCCS-SCEEEEEECTTSSEEEEEETT
T ss_pred CceEEEEECCCCCEEEEEeCC-CcEEEEeCCCCEEE---------------EEEcCCC-CcEEEEEECCCCCEEEEEeCC
Confidence 234455554444443 45567776554321 2345555 67999999 899999999999
Q ss_pred CCCChhHH
Q 008510 216 RSDNPYDA 223 (563)
Q Consensus 216 ~~~~~w~~ 223 (563)
+.+++|++
T Consensus 312 ~~i~vwd~ 319 (321)
T 3ow8_A 312 QEIHIYDC 319 (321)
T ss_dssp CCEEEEEC
T ss_pred CeEEEEeC
Confidence 99999985
No 12
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.88 E-value=2.1e-21 Score=197.06 Aligned_cols=212 Identities=17% Similarity=0.198 Sum_probs=145.5
Q ss_pred CCCEEEEEECCCcEEEEcCC--------CceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc-C--C---ceeEE
Q 008510 2 PGVGIISASHDCTIRLWALT--------GQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-D--G---VCVQS 66 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~~--------g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd-~--~---~~~~~ 66 (563)
+|++|++|+.|++|++|+.. ++++.++.+|...|++++|+|+| .+++|+.|++|++|| . + +++..
T Consensus 69 ~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~ 148 (330)
T 2hes_X 69 HTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISV 148 (330)
T ss_dssp TSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEE
T ss_pred CCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEE
Confidence 47899999999999999982 35678899999999999999999 999999999999999 2 2 45667
Q ss_pred Ee-cCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccccc----------eeEEeeccCCceEEEeC
Q 008510 67 IE-HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELS----------QYKLCRKKVGGLKLEDL 134 (563)
Q Consensus 67 l~-h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~----------~~~~~~~~~~~i~~~d~ 134 (563)
+. |...|.+++|+|++. |++|+.|++|++||.+++.......+..|...+. ...+++..|+.|++||+
T Consensus 149 ~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~ 228 (330)
T 2hes_X 149 LQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKY 228 (330)
T ss_dssp ECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEE
T ss_pred eccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEe
Confidence 76 889999999999998 9999999999999988764333334444444332 24567788999999998
Q ss_pred CCCc--------eeee-cc-cCCCeEEE--------EecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccC
Q 008510 135 PGLE--------ALQI-PG-TNAGQTKV--------VREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYD 196 (563)
Q Consensus 135 ~~~~--------~l~~-~g-~~dg~~~l--------~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d 196 (563)
.+.. .... .+ +......+ +..+.++.+.+|+...+.|..... ...+|...
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~~~~~~~~~------------~~~~h~~~ 296 (330)
T 2hes_X 229 MGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVDGEWKVFAK------------RALCHGVY 296 (330)
T ss_dssp EEECTTSCEEEEEEEECCSCCSSCEEEEEECTTSCEEEEETTSCEEEEEEETTEEEEEEE------------ESCTTTTS
T ss_pred cCCCccccceeEEeeecccccccceEEEEEcCCCEEEEEeCCCEEEEEEcCCCceEEEec------------cccccccc
Confidence 5431 1111 12 33222222 222233556678776665543211 12344422
Q ss_pred cEEEEEc-C--CCCeeeeecCCCCCChhHHHH
Q 008510 197 YVFDVDI-G--DGEPTRKLPYNRSDNPYDAAD 225 (563)
Q Consensus 197 ~v~~vd~-~--dg~~~~~~~~n~~~~~w~~a~ 225 (563)
.|.++.+ + +|..+++.+.|+.+++|++..
T Consensus 297 ~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 297 EINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp CEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred eEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 6888988 5 688899999999999998753
No 13
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=99.88 E-value=8.2e-22 Score=202.55 Aligned_cols=207 Identities=18% Similarity=0.241 Sum_probs=148.8
Q ss_pred CCEEEEEECCCcEEEEcC-CCcee----EEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcE
Q 008510 3 GVGIISASHDCTIRLWAL-TGQVL----MEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCV 73 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~-~g~~i----~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V 73 (563)
+..+++|+.||+|++||+ ++++. ....+|.+.|++++|+|+| .+++|+.|++|++|| +++++..+. |...|
T Consensus 105 d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v 184 (357)
T 4g56_B 105 EKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEV 184 (357)
T ss_dssp TTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCE
T ss_pred CCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCE
Confidence 456888999999999999 66543 3455899999999999999 999999999999999 788888888 89999
Q ss_pred EEEEEccCCc--EEEEeCCCcEEEEEcCCCceeceeeeccccccc---------ceeEEeeccCCceEEEeCCCCceeee
Q 008510 74 WDAKFLENGD--IVTACSDGVTRIWTVHSDKVADSLELEAYASEL---------SQYKLCRKKVGGLKLEDLPGLEALQI 142 (563)
Q Consensus 74 ~~v~~~p~g~--i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v---------~~~~~~~~~~~~i~~~d~~~~~~l~~ 142 (563)
++++|+|+++ +++++.||+|++||+++++.........+...+ ..+..++..++.|++||+...+.+..
T Consensus 185 ~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~ 264 (357)
T 4g56_B 185 NCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQT 264 (357)
T ss_dssp EEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEE
T ss_pred EEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEE
Confidence 9999999875 899999999999999988754433332222211 23455677889999999987655433
Q ss_pred c-ccCCCeEEEEec----------CCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-C-CCCee
Q 008510 143 P-GTNAGQTKVVRE----------GDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-G-DGEPT 209 (563)
Q Consensus 143 ~-g~~dg~~~l~~~----------~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~-dg~~~ 209 (563)
. ++......+..+ +.++.+++||...+... ...||. +.|.++.| | |+..+
T Consensus 265 ~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~----------------~~~~H~-~~V~~vafsP~d~~~l 327 (357)
T 4g56_B 265 SAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVF----------------RDLSHR-DFVTGVAWSPLDHSKF 327 (357)
T ss_dssp ECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEE----------------EECCCS-SCEEEEEECSSSTTEE
T ss_pred EeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEe----------------EECCCC-CCEEEEEEeCCCCCEE
Confidence 2 333333333332 22344566766554321 123454 78999999 5 78899
Q ss_pred eeecCCCCCChhHHHHH
Q 008510 210 RKLPYNRSDNPYDAADK 226 (563)
Q Consensus 210 ~~~~~n~~~~~w~~a~~ 226 (563)
++.++|+++++|++.+.
T Consensus 328 ~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 328 TTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp EEEETTSCEEEEECC--
T ss_pred EEEcCCCeEEEEECCCC
Confidence 99999999999998543
No 14
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.88 E-value=5.1e-21 Score=195.16 Aligned_cols=220 Identities=17% Similarity=0.208 Sum_probs=155.1
Q ss_pred CCCEEEEEECCCcEEEEcC-C-------CceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-c
Q 008510 2 PGVGIISASHDCTIRLWAL-T-------GQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-H 69 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~-------g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h 69 (563)
+|.+|+|||.|++|++||+ + +.+...+.+|...|.+++|+|++ .+++|+.|++|++|| ++++++.+. |
T Consensus 38 d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h 117 (343)
T 2xzm_R 38 DSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGH 117 (343)
T ss_dssp CCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECC
T ss_pred CCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCC
Confidence 5789999999999999998 3 34677899999999999999999 999999999999999 788888888 9
Q ss_pred CCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeeccccccc------------------ceeEEeeccCCceE
Q 008510 70 PGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASEL------------------SQYKLCRKKVGGLK 130 (563)
Q Consensus 70 ~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v------------------~~~~~~~~~~~~i~ 130 (563)
...|++++|+|+|+ +++|+.|++|++||+.............+...+ ....+++..++.|+
T Consensus 118 ~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~ 197 (343)
T 2xzm_R 118 QSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLK 197 (343)
T ss_dssp CSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEE
T ss_pred CCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEE
Confidence 99999999999998 999999999999999754322111111121111 13566777889999
Q ss_pred EEeCCCCc----------eeeecccCCCeEEEEecCCCeEEEEEecccce----------------EEEeCcEeeCCCCC
Q 008510 131 LEDLPGLE----------ALQIPGTNAGQTKVVREGDNGVAYSWDMKEQK----------------WDKLGEVVDGPDDG 184 (563)
Q Consensus 131 ~~d~~~~~----------~l~~~g~~dg~~~l~~~~~~~~~~~wd~~~~~----------------w~~~g~v~~~~~~~ 184 (563)
+||..... +.....+++|.+.+..+.| +.+++||..... |.+-+.++....++
T Consensus 198 iwd~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~d-g~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~~la~~~d~ 276 (343)
T 2xzm_R 198 VWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKD-KKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVGTDQ 276 (343)
T ss_dssp EEETTTEEEEEEECCSSCEEEEEECTTSSEEEEEETT-CEEEEEESSCCSSCSEEEECSSCEEEEEECSSSCEEEEEESS
T ss_pred EEcCCCceeEEEcCccccceEEEECCCCCEEEEEcCC-CeEEEEECCCCcccceeecCCCcEEEEEECCCCCEEEEECCC
Confidence 99954322 1222355677666655555 566788862110 11111111111111
Q ss_pred CCce-------------eec-----------CcccCcEEEEEc-CCCCeeeeecCCCCCChhHHH
Q 008510 185 MNRP-------------ILD-----------GIQYDYVFDVDI-GDGEPTRKLPYNRSDNPYDAA 224 (563)
Q Consensus 185 ~~~~-------------~~~-----------g~~~d~v~~vd~-~dg~~~~~~~~n~~~~~w~~a 224 (563)
..+ .+. |+. +.|.++.| ++|..++.+..|+.+++|++.
T Consensus 277 -~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~ 339 (343)
T 2xzm_R 277 -GVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKN-PQCTSLAWNALGKKLFAGFTDGVIRTFSFE 339 (343)
T ss_dssp -CEEEEESSSCCSCSEEECCCCSGGGBTTBCCSC-CCEEEEEECSSSCCEEEEETTSEEEEEEEE
T ss_pred -CEEEEEeCCCCCCceEEeecCcchhhhhhcCCC-CceEEEEECCCCCeEEEecCCceEEEEEEE
Confidence 111 111 333 56889999 899999999999999999763
No 15
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.88 E-value=4.1e-21 Score=191.87 Aligned_cols=217 Identities=17% Similarity=0.225 Sum_probs=150.7
Q ss_pred CCCEEEEEECCCcEEEEcCC---CceeEEEecCCCcEEEEEEcCC--C-eEEEEeCCCcEEEEc--CC--ceeEEEe-cC
Q 008510 2 PGVGIISASHDCTIRLWALT---GQVLMEMVGHTAIVYSIDSHAS--G-LIVSGSEDRFAKIWK--DG--VCVQSIE-HP 70 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~~---g~~i~~l~gH~~~V~~v~~~p~--g-~l~s~s~D~tvriWd--~~--~~~~~l~-h~ 70 (563)
+|++|++||.|++|++|++. ++++.++.+|.+.|++++|+|+ | .++|||.|++|++|| ++ ..+..+. |.
T Consensus 20 ~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~ 99 (297)
T 2pm7_B 20 YGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHS 99 (297)
T ss_dssp TSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCS
T ss_pred CCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCC
Confidence 58999999999999999983 4688999999999999999863 6 899999999999999 44 3556666 88
Q ss_pred CcEEEEEEccC--Cc-EEEEeCCCcEEEEEcCCCceeceeeeccccccc---------------------ceeEEeeccC
Q 008510 71 GCVWDAKFLEN--GD-IVTACSDGVTRIWTVHSDKVADSLELEAYASEL---------------------SQYKLCRKKV 126 (563)
Q Consensus 71 ~~V~~v~~~p~--g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v---------------------~~~~~~~~~~ 126 (563)
..|++++|+|+ |. +++|+.|++|++||++++.......+..+...+ ....+++..|
T Consensus 100 ~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D 179 (297)
T 2pm7_B 100 ASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGAD 179 (297)
T ss_dssp SCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETT
T ss_pred CceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCC
Confidence 89999999997 76 899999999999999876422222233333221 2356778889
Q ss_pred CceEEEeCCCCc----ee-eecccCCCeEEEEecCCC---eE--EEEEecccceEEEeCcEeeCCCCCCCceee--cCcc
Q 008510 127 GGLKLEDLPGLE----AL-QIPGTNAGQTKVVREGDN---GV--AYSWDMKEQKWDKLGEVVDGPDDGMNRPIL--DGIQ 194 (563)
Q Consensus 127 ~~i~~~d~~~~~----~l-~~~g~~dg~~~l~~~~~~---~~--~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~--~g~~ 194 (563)
+.|++||+.... .. ...+|.+....+.+++++ .. ...+|.....|+.... .. ......+ .++.
T Consensus 180 ~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~----~~-~~~~~~~~~~~~~ 254 (297)
T 2pm7_B 180 NLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNE----QG-PWKKTLLKEEKFP 254 (297)
T ss_dssp SCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESST----TS-CCEEEESSSSCCS
T ss_pred CcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCC----CC-ccceeeeecccCC
Confidence 999999987644 22 122555444444444431 11 1222333333332110 00 0001112 2333
Q ss_pred cCcEEEEEc-CCCCeeeeecCCCCCChhHHH
Q 008510 195 YDYVFDVDI-GDGEPTRKLPYNRSDNPYDAA 224 (563)
Q Consensus 195 ~d~v~~vd~-~dg~~~~~~~~n~~~~~w~~a 224 (563)
+.|+++.| ++|..++....|+.+++|+..
T Consensus 255 -~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 255 -DVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp -SCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred -CcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 67999999 999999999999999999864
No 16
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.87 E-value=2.2e-21 Score=198.18 Aligned_cols=217 Identities=15% Similarity=0.130 Sum_probs=152.6
Q ss_pred CCCEEEEEECCCcEEEEcC-CC--ceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CC---ceeEEEe-cCC
Q 008510 2 PGVGIISASHDCTIRLWAL-TG--QVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DG---VCVQSIE-HPG 71 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g--~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~---~~~~~l~-h~~ 71 (563)
+|++|++|+.|++|++|+. .+ +++.++.+|...|.+++|+|+| .+++|+.|++|++|| .+ .++..+. |..
T Consensus 72 ~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~ 151 (345)
T 3fm0_A 72 CGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQ 151 (345)
T ss_dssp TSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCS
T ss_pred CCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCC
Confidence 5789999999999999998 44 5788999999999999999999 999999999999999 33 3455666 888
Q ss_pred cEEEEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccccc--------eeEEeeccCCceEEEeCCCCc----
Q 008510 72 CVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELS--------QYKLCRKKVGGLKLEDLPGLE---- 138 (563)
Q Consensus 72 ~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~--------~~~~~~~~~~~i~~~d~~~~~---- 138 (563)
.|.+++|+|+++ +++|+.|++|++||.++++......+..|...+. ...+++..|+.|++|+.....
T Consensus 152 ~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~ 231 (345)
T 3fm0_A 152 DVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQG 231 (345)
T ss_dssp CEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTC
T ss_pred CeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCcc
Confidence 999999999998 9999999999999998876444445555555443 345677889999999962111
Q ss_pred -----------------------eeeecccCCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCccc
Q 008510 139 -----------------------ALQIPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQY 195 (563)
Q Consensus 139 -----------------------~l~~~g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~ 195 (563)
+.....++++...+..+.+ ..+.+|+...+.-....... .......||.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d-~~i~vw~~~~~~~~~~~~~~------~~~~~~~~h~- 303 (345)
T 3fm0_A 232 VACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGD-DAIRVFQEDPNSDPQQPTFS------LTAHLHQAHS- 303 (345)
T ss_dssp CCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETT-SCEEEEEECTTSCTTSCCEE------EEEEETTSSS-
T ss_pred ceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCC-CeEEEEEeCCCCCcceeeEE------EEeeeccccc-
Confidence 1111123333333333333 33445553221100000000 0011234665
Q ss_pred CcEEEEEc-CCC-CeeeeecCCCCCChhHHHHH
Q 008510 196 DYVFDVDI-GDG-EPTRKLPYNRSDNPYDAADK 226 (563)
Q Consensus 196 d~v~~vd~-~dg-~~~~~~~~n~~~~~w~~a~~ 226 (563)
+.|.++.| +++ ..+++.+.|+.+++|++..+
T Consensus 304 ~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~ 336 (345)
T 3fm0_A 304 QDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRP 336 (345)
T ss_dssp SCEEEEEECSSSTTEEEEEETTSCEEEEEECC-
T ss_pred CcEeEeEEeCCCceEEEEcCCCCcEEEEEecCC
Confidence 77999999 776 47899999999999998643
No 17
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.87 E-value=9.7e-21 Score=194.23 Aligned_cols=202 Identities=19% Similarity=0.256 Sum_probs=137.3
Q ss_pred CCCEEEEEECCCcEEEEcC-CCceeE------------------------------------------------EEecCC
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVLM------------------------------------------------EMVGHT 32 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i~------------------------------------------------~l~gH~ 32 (563)
+|++|+|||.||+|++||. +++... .+.+|.
T Consensus 75 d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~ 154 (354)
T 2pbi_B 75 DKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHT 154 (354)
T ss_dssp TSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECS
T ss_pred CCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccC
Confidence 4678899999999999987 554433 344577
Q ss_pred CcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEEEEEcc--CCc-EEEEeCCCcEEEEEcCCCceec
Q 008510 33 AIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDAKFLE--NGD-IVTACSDGVTRIWTVHSDKVAD 105 (563)
Q Consensus 33 ~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~v~~~p--~g~-i~sgs~Dg~Irvwd~~~~~~~~ 105 (563)
..|.+++|+|++ .+++|+.|++|++|| ++++++++. |...|.+++|+| +|. +++|+.||+|++||+++++...
T Consensus 155 ~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~ 234 (354)
T 2pbi_B 155 NYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQ 234 (354)
T ss_dssp SCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEE
T ss_pred CcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEE
Confidence 777778888777 778888888888888 677777777 777888888876 345 7888888888888887776432
Q ss_pred eeeecccccccc--------eeEEeeccCCceEEEeCCCCceee-------------ecccCCCeEEEEecCCCeEEEEE
Q 008510 106 SLELEAYASELS--------QYKLCRKKVGGLKLEDLPGLEALQ-------------IPGTNAGQTKVVREGDNGVAYSW 164 (563)
Q Consensus 106 ~~~~~~~~~~v~--------~~~~~~~~~~~i~~~d~~~~~~l~-------------~~g~~dg~~~l~~~~~~~~~~~w 164 (563)
.+..|...+. ...+++..|+.|++||++....+. ...+++|.+.+....+ +.+++|
T Consensus 235 --~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d-~~i~vw 311 (354)
T 2pbi_B 235 --AFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYND-YTINVW 311 (354)
T ss_dssp --EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETT-SCEEEE
T ss_pred --EecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECC-CcEEEE
Confidence 2233333222 344566677888888876543221 1234455555444444 445566
Q ss_pred ecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeeeecCCCCCChhH
Q 008510 165 DMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRKLPYNRSDNPYD 222 (563)
Q Consensus 165 d~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~~~~~w~ 222 (563)
|...+. ....+.||. +.|.++.+ +||..+++++.|+.+++|+
T Consensus 312 d~~~~~---------------~~~~l~~h~-~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 312 DVLKGS---------------RVSILFGHE-NRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp ETTTCS---------------EEEEECCCS-SCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred ECCCCc---------------eEEEEECCC-CcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 654432 112355665 78999999 9999999999999999984
No 18
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=99.87 E-value=5.8e-21 Score=193.19 Aligned_cols=205 Identities=20% Similarity=0.294 Sum_probs=159.2
Q ss_pred CCCEEEEEECCCcEEEEcC-CCc--eeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEE
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQ--VLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVW 74 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~--~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~ 74 (563)
++++|+|||.|++||+|++ +++ +...+.||...|.+++++|++ .+++++.|++|++|| +++++..+. |+..++
T Consensus 47 ~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~ 126 (321)
T 3ow8_A 47 NSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAW 126 (321)
T ss_dssp --CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCC
T ss_pred CCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEE
Confidence 3678999999999999999 554 456789999999999999999 999999999999999 788888888 778999
Q ss_pred EEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccc--------cceeEEeeccCCceEEEeCCCCceeeec--
Q 008510 75 DAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASE--------LSQYKLCRKKVGGLKLEDLPGLEALQIP-- 143 (563)
Q Consensus 75 ~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~--------v~~~~~~~~~~~~i~~~d~~~~~~l~~~-- 143 (563)
+++|+|+|+ +++|+.||.|++||+++++.... +..+... -....+++..++.|++||+.+.+.+...
T Consensus 127 ~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~--~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~ 204 (321)
T 3ow8_A 127 TLAFSPDSQYLATGTHVGKVNIFGVESGKKEYS--LDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEG 204 (321)
T ss_dssp CEEECTTSSEEEEECTTSEEEEEETTTCSEEEE--EECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred EEEECCCCCEEEEEcCCCcEEEEEcCCCceeEE--ecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcc
Confidence 999999999 99999999999999998874322 2222211 2245667788999999999876554322
Q ss_pred ---------ccCCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeeeec
Q 008510 144 ---------GTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRKLP 213 (563)
Q Consensus 144 ---------g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~ 213 (563)
.+++|.+.+..+.+ +.+.+||...+.. ...+.||. +.|.++.+ ++|..+++.+
T Consensus 205 h~~~v~~l~~spd~~~l~s~s~d-g~i~iwd~~~~~~---------------~~~~~~h~-~~v~~~~~sp~~~~l~s~s 267 (321)
T 3ow8_A 205 HAMPIRSLTFSPDSQLLVTASDD-GYIKIYDVQHANL---------------AGTLSGHA-SWVLNVAFCPDDTHFVSSS 267 (321)
T ss_dssp CSSCCCEEEECTTSCEEEEECTT-SCEEEEETTTCCE---------------EEEECCCS-SCEEEEEECTTSSEEEEEE
T ss_pred cCCceeEEEEcCCCCEEEEEcCC-CeEEEEECCCcce---------------eEEEcCCC-CceEEEEECCCCCEEEEEe
Confidence 44556555544444 5567787654422 12355665 77999999 8999999999
Q ss_pred CCCCCChhHHHH
Q 008510 214 YNRSDNPYDAAD 225 (563)
Q Consensus 214 ~n~~~~~w~~a~ 225 (563)
.|+++++|++..
T Consensus 268 ~D~~v~iwd~~~ 279 (321)
T 3ow8_A 268 SDKSVKVWDVGT 279 (321)
T ss_dssp TTSCEEEEETTT
T ss_pred CCCcEEEEeCCC
Confidence 999999999853
No 19
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.87 E-value=1.2e-20 Score=196.31 Aligned_cols=206 Identities=21% Similarity=0.334 Sum_probs=156.7
Q ss_pred CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEecCCcEEEEE
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIEHPGCVWDAK 77 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~h~~~V~~v~ 77 (563)
+|++|++|+.|++|++||+ +++++..+.+|...|++++|+|++ .+++|+.|++|++|| ++++...+.+...+.+++
T Consensus 134 dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~ 213 (393)
T 1erj_A 134 DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVA 213 (393)
T ss_dssp TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEE
T ss_pred CCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEE
Confidence 5789999999999999999 889999999999999999999999 999999999999999 788888888888999999
Q ss_pred Ecc-CCc-EEEEeCCCcEEEEEcCCCceeceee-----ecccccccc--------eeEEeeccCCceEEEeCCCCce---
Q 008510 78 FLE-NGD-IVTACSDGVTRIWTVHSDKVADSLE-----LEAYASELS--------QYKLCRKKVGGLKLEDLPGLEA--- 139 (563)
Q Consensus 78 ~~p-~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~-----~~~~~~~v~--------~~~~~~~~~~~i~~~d~~~~~~--- 139 (563)
|+| +|+ +++|+.|+.|++||.++++...... ...|...+. ...+++..++.|++||+.....
T Consensus 214 ~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~ 293 (393)
T 1erj_A 214 VSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSD 293 (393)
T ss_dssp ECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC--------
T ss_pred EECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCccc
Confidence 999 788 9999999999999999887443221 122333222 4556778899999999865321
Q ss_pred --------------------eeecccCCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEE
Q 008510 140 --------------------LQIPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVF 199 (563)
Q Consensus 140 --------------------l~~~g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~ 199 (563)
.....+++|.+.+..+.| +.+++||..++.. ...+.||. +.|.
T Consensus 294 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D-~~v~iwd~~~~~~---------------~~~l~~h~-~~v~ 356 (393)
T 1erj_A 294 SKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKD-RGVLFWDKKSGNP---------------LLMLQGHR-NSVI 356 (393)
T ss_dssp -------CEEEEEECCSSCEEEEEECGGGCEEEEEETT-SEEEEEETTTCCE---------------EEEEECCS-SCEE
T ss_pred ccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCC-CeEEEEECCCCeE---------------EEEECCCC-CCEE
Confidence 111233445554444444 5567888665431 22355665 6789
Q ss_pred EEEc-C------CCCeeeeecCCCCCChhHHH
Q 008510 200 DVDI-G------DGEPTRKLPYNRSDNPYDAA 224 (563)
Q Consensus 200 ~vd~-~------dg~~~~~~~~n~~~~~w~~a 224 (563)
++.+ + ++..+++++.|+.+++|+..
T Consensus 357 ~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~ 388 (393)
T 1erj_A 357 SVAVANGSSLGPEYNVFATGSGDCKARIWKYK 388 (393)
T ss_dssp EEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred EEEecCCcCcCCCCCEEEEECCCCcEEECccc
Confidence 9987 3 57789999999999999863
No 20
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.87 E-value=8.1e-21 Score=191.54 Aligned_cols=211 Identities=16% Similarity=0.187 Sum_probs=148.5
Q ss_pred CCCEEEEEECCCcEEEEcC-CCc--eeEEEecCCCcEEEEEEcC--CC-eEEEEeCCCcEEEEc--CC--ceeEEEe-cC
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQ--VLMEMVGHTAIVYSIDSHA--SG-LIVSGSEDRFAKIWK--DG--VCVQSIE-HP 70 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~--~i~~l~gH~~~V~~v~~~p--~g-~l~s~s~D~tvriWd--~~--~~~~~l~-h~ 70 (563)
+|++|++||.|++|++||+ +++ ++.++.+|.+.|++++|+| ++ .|+|||.|++|++|| ++ .++..+. |.
T Consensus 24 ~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~ 103 (316)
T 3bg1_A 24 YGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHD 103 (316)
T ss_dssp GGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCS
T ss_pred CCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCC
Confidence 4789999999999999999 553 5788999999999999986 36 899999999999999 44 3556666 88
Q ss_pred CcEEEEEEccC--Cc-EEEEeCCCcEEEEEcCCCcee-ceeeeccccccc-------------------------ceeEE
Q 008510 71 GCVWDAKFLEN--GD-IVTACSDGVTRIWTVHSDKVA-DSLELEAYASEL-------------------------SQYKL 121 (563)
Q Consensus 71 ~~V~~v~~~p~--g~-i~sgs~Dg~Irvwd~~~~~~~-~~~~~~~~~~~v-------------------------~~~~~ 121 (563)
..|++++|+|+ |. +++|+.|++|++||++.+... ....+..+...+ ....+
T Consensus 104 ~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 183 (316)
T 3bg1_A 104 SSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFA 183 (316)
T ss_dssp SCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEE
T ss_pred CceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEE
Confidence 99999999997 66 999999999999999876311 111122222111 13567
Q ss_pred eeccCCceEEEeCCCCc---eee-ecccCCCeEEEEecC-------------CCeEEEEEecccceEEEeCcEeeCCCCC
Q 008510 122 CRKKVGGLKLEDLPGLE---ALQ-IPGTNAGQTKVVREG-------------DNGVAYSWDMKEQKWDKLGEVVDGPDDG 184 (563)
Q Consensus 122 ~~~~~~~i~~~d~~~~~---~l~-~~g~~dg~~~l~~~~-------------~~~~~~~wd~~~~~w~~~g~v~~~~~~~ 184 (563)
++..|+.|++||+.... .+. ..+|.+....+..++ .++.+.+|+..... ...
T Consensus 184 sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~-----------~~~ 252 (316)
T 3bg1_A 184 SGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDAS-----------SNT 252 (316)
T ss_dssp CCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTT-----------CCC
T ss_pred EecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCcc-----------ccc
Confidence 78889999999997442 221 224444333333332 23445566543210 000
Q ss_pred CCceeecCcccCcEEEEEc-CCCCeeeeecCCCCCChhHHH
Q 008510 185 MNRPILDGIQYDYVFDVDI-GDGEPTRKLPYNRSDNPYDAA 224 (563)
Q Consensus 185 ~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~~~~~w~~a 224 (563)
.....+.++. +.|+++.| ++|..+++...|+.+++|+..
T Consensus 253 ~~~~~~~~~~-~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 253 WSPKLLHKFN-DVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp CBCCEEEECS-SCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred hhhhhhhcCC-CcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 0112233443 78999999 999999999999999999863
No 21
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=99.86 E-value=1.6e-20 Score=188.20 Aligned_cols=204 Identities=18% Similarity=0.268 Sum_probs=146.0
Q ss_pred CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CC-ceeEEEe-cCCcEEE
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DG-VCVQSIE-HPGCVWD 75 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~-~~~~~l~-h~~~V~~ 75 (563)
++++|++|+.|++|++||+ +++++.++.+|.+.|++++|+|++ .+++|+.|++|++|| ++ .+.+.+. |...|.+
T Consensus 66 ~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~ 145 (304)
T 2ynn_A 66 RKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMC 145 (304)
T ss_dssp GGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEE
T ss_pred CCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEE
Confidence 4688999999999999999 899999999999999999999999 999999999999999 44 4556676 8899999
Q ss_pred EEEcc-CCc-EEEEeCCCcEEEEEcCCCceeceeeeccccc----------ccceeEEeeccCCceEEEeCCCCceeeec
Q 008510 76 AKFLE-NGD-IVTACSDGVTRIWTVHSDKVADSLELEAYAS----------ELSQYKLCRKKVGGLKLEDLPGLEALQIP 143 (563)
Q Consensus 76 v~~~p-~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~----------~v~~~~~~~~~~~~i~~~d~~~~~~l~~~ 143 (563)
++|+| ++. +++|+.|++|++||++++....... ..+.. .-..+.+++..++.|++||+...+.+...
T Consensus 146 v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~ 224 (304)
T 2ynn_A 146 VAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT-TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL 224 (304)
T ss_dssp EEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEE-CCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred EEECCCCCCEEEEEeCCCeEEEEECCCCCccceec-cCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceee
Confidence 99999 556 9999999999999998765321111 11111 11246778889999999999877654432
Q ss_pred -cc----------CCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCe-ee
Q 008510 144 -GT----------NAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEP-TR 210 (563)
Q Consensus 144 -g~----------~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~-~~ 210 (563)
+| +++...+..+.| +.+.+||..++... ..+.++. +.++++.+ ++|.. .+
T Consensus 225 ~~h~~~v~~~~~~p~~~~l~s~s~D-g~i~iWd~~~~~~~---------------~~~~~~~-~~~~~~~~~~~~~~~~~ 287 (304)
T 2ynn_A 225 EGHMSNVSFAVFHPTLPIIISGSED-GTLKIWNSSTYKVE---------------KTLNVGL-ERSWCIATHPTGRKNYI 287 (304)
T ss_dssp ECCSSCEEEEEECSSSSEEEEEETT-SCEEEEETTTCCEE---------------EEECCSS-SSEEEEEECTTCGGGCE
T ss_pred CCCCCCEEEEEECCCCCEEEEEcCC-CeEEEEECCCCcee---------------eeccCCC-ccEEEEEECCCCCceEE
Confidence 44 444433333333 44567776554322 1233333 56888886 66643 34
Q ss_pred eecCCCCCChhHH
Q 008510 211 KLPYNRSDNPYDA 223 (563)
Q Consensus 211 ~~~~n~~~~~w~~ 223 (563)
...++.+..+|.+
T Consensus 288 asg~~~g~~~~~~ 300 (304)
T 2ynn_A 288 ASGFDNGFTVLSL 300 (304)
T ss_dssp EEEETTEEEEEEC
T ss_pred EEecCCceEEEEe
Confidence 5555655555544
No 22
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.86 E-value=5.7e-20 Score=184.27 Aligned_cols=204 Identities=25% Similarity=0.455 Sum_probs=158.9
Q ss_pred CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEEE
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDA 76 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~v 76 (563)
+|++|++|+.|++|++||+ +++++.++.+|...|.+++|+|++ .+++|+.|++|++|| +++++..+. |...|.++
T Consensus 76 ~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~ 155 (312)
T 4ery_A 76 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV 155 (312)
T ss_dssp TSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEE
T ss_pred CCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEE
Confidence 5789999999999999999 899999999999999999999999 999999999999999 788888888 88899999
Q ss_pred EEccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccc--------cceeEEeeccCCceEEEeCCCCceeeec-cc-
Q 008510 77 KFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASE--------LSQYKLCRKKVGGLKLEDLPGLEALQIP-GT- 145 (563)
Q Consensus 77 ~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~--------v~~~~~~~~~~~~i~~~d~~~~~~l~~~-g~- 145 (563)
+|+|+|. +++|+.||.|++||+++++...... ...... -....+++..++.|++||+...+.+... ++
T Consensus 156 ~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 234 (312)
T 4ery_A 156 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI-DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 234 (312)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTTCCEEEEEC-CSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSC
T ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCceeeEEe-ccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecC
Confidence 9999998 8999999999999999887443211 111111 2245667788899999999877654332 22
Q ss_pred ------------CCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeeee
Q 008510 146 ------------NAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRKL 212 (563)
Q Consensus 146 ------------~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~ 212 (563)
.++.+ ++..+.++.+++||...+.. ...+.||. +.|.++.+ +++..+++.
T Consensus 235 ~~~~~~~~~~~~~~~~~-l~sg~~dg~i~vwd~~~~~~---------------~~~~~~h~-~~v~~~~~~p~~~~l~s~ 297 (312)
T 4ery_A 235 NEKYCIFANFSVTGGKW-IVSGSEDNLVYIWNLQTKEI---------------VQKLQGHT-DVVISTACHPTENIIASA 297 (312)
T ss_dssp CSSSCCCEEEECSSSCE-EEECCTTSCEEEEETTTCCE---------------EEEECCCS-SCEEEEEECSSSSEEEEE
T ss_pred CceEEEEEEEEeCCCcE-EEEECCCCEEEEEECCCchh---------------hhhhhccC-CcEEEEeecCcCCceEEE
Confidence 23333 33344446677888765421 22356776 78999999 888888877
Q ss_pred c--CCCCCChhHH
Q 008510 213 P--YNRSDNPYDA 223 (563)
Q Consensus 213 ~--~n~~~~~w~~ 223 (563)
. .|+.+++|+.
T Consensus 298 ~~~~d~~i~~W~~ 310 (312)
T 4ery_A 298 ALENDKTIKLWKS 310 (312)
T ss_dssp ECTTTCCEEEEEC
T ss_pred EccCCccEEEecC
Confidence 6 5888999874
No 23
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.86 E-value=1.1e-19 Score=182.21 Aligned_cols=206 Identities=21% Similarity=0.333 Sum_probs=158.5
Q ss_pred CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEEE
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDA 76 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~v 76 (563)
+|++|++|+.||+|++|+. ++++...+.+|...|.+++|+|++ .+++|+.|++|++|| +++++..+. |...|+++
T Consensus 34 ~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~ 113 (312)
T 4ery_A 34 NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCC 113 (312)
T ss_dssp TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred CCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEE
Confidence 5789999999999999999 899999999999999999999999 999999999999999 788888888 88899999
Q ss_pred EEccCCc-EEEEeCCCcEEEEEcCCCceeceeeeccccccc--------ceeEEeeccCCceEEEeCCCCceeee-----
Q 008510 77 KFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASEL--------SQYKLCRKKVGGLKLEDLPGLEALQI----- 142 (563)
Q Consensus 77 ~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v--------~~~~~~~~~~~~i~~~d~~~~~~l~~----- 142 (563)
+|+|++. +++|+.|+.|++||+++++.... +..+...+ ....+++..++.|++||++....+..
T Consensus 114 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~ 191 (312)
T 4ery_A 114 NFNPQSNLIVSGSFDESVRIWDVKTGKCLKT--LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD 191 (312)
T ss_dssp EECSSSSEEEEEETTSCEEEEETTTCCEEEE--ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSS
T ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCEEEEE--ecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccC
Confidence 9999998 99999999999999998874432 22333222 24556778899999999987654322
Q ss_pred -------cccCCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcc---cCcEEEEEcCCCCeeeee
Q 008510 143 -------PGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQ---YDYVFDVDIGDGEPTRKL 212 (563)
Q Consensus 143 -------~g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~---~d~v~~vd~~dg~~~~~~ 212 (563)
..+++|.+.+..+.+ +.+.+||...+.... .+.++. +.....+..+++..++++
T Consensus 192 ~~~~~~~~~~~~~~~l~~~~~d-~~i~iwd~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~l~sg 255 (312)
T 4ery_A 192 NPPVSFVKFSPNGKYILAATLD-NTLKLWDYSKGKCLK---------------TYTGHKNEKYCIFANFSVTGGKWIVSG 255 (312)
T ss_dssp CCCEEEEEECTTSSEEEEEETT-TEEEEEETTTTEEEE---------------EECSSCCSSSCCCEEEECSSSCEEEEC
T ss_pred CCceEEEEECCCCCEEEEEcCC-CeEEEEECCCCcEEE---------------EEEecCCceEEEEEEEEeCCCcEEEEE
Confidence 245566666665555 567788877664321 122222 111223344678889999
Q ss_pred cCCCCCChhHHHH
Q 008510 213 PYNRSDNPYDAAD 225 (563)
Q Consensus 213 ~~n~~~~~w~~a~ 225 (563)
..|+.+++|++..
T Consensus 256 ~~dg~i~vwd~~~ 268 (312)
T 4ery_A 256 SEDNLVYIWNLQT 268 (312)
T ss_dssp CTTSCEEEEETTT
T ss_pred CCCCEEEEEECCC
Confidence 9999999999753
No 24
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.85 E-value=5.8e-20 Score=185.49 Aligned_cols=201 Identities=20% Similarity=0.257 Sum_probs=150.8
Q ss_pred CCEEEEEECCCcEEEEcCC------CceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCc
Q 008510 3 GVGIISASHDCTIRLWALT------GQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGC 72 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~~------g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~ 72 (563)
+++|+|||.|++|++|++. +.++.++.+|...|.+++|+|+| .+++|+.|++||+|| ++++++.+. |...
T Consensus 30 ~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~ 109 (319)
T 3frx_A 30 PNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSD 109 (319)
T ss_dssp TTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSC
T ss_pred ccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCc
Confidence 4789999999999999982 34678899999999999999999 999999999999999 888888888 9999
Q ss_pred EEEEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccccc--------------eeEEeeccCCceEEEeCCCC
Q 008510 73 VWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELS--------------QYKLCRKKVGGLKLEDLPGL 137 (563)
Q Consensus 73 V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~--------------~~~~~~~~~~~i~~~d~~~~ 137 (563)
|++++|+|++. +++|+.|++|++||++..... .+..+...+. ...+++..++.|++||+...
T Consensus 110 v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~---~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~ 186 (319)
T 3frx_A 110 VMSVDIDKKASMIISGSRDKTIKVWTIKGQCLA---TLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF 186 (319)
T ss_dssp EEEEEECTTSCEEEEEETTSCEEEEETTSCEEE---EECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTT
T ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEE---EEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcc
Confidence 99999999998 999999999999999765322 2222322211 24667888999999999865
Q ss_pred ceee-----------ecccCCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CC
Q 008510 138 EALQ-----------IPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GD 205 (563)
Q Consensus 138 ~~l~-----------~~g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~d 205 (563)
.... ...+++|...+..+.| +.+.+||...+.... .+.++ +.|.++.+ ++
T Consensus 187 ~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~d-g~i~iwd~~~~~~~~---------------~~~~~--~~v~~~~~sp~ 248 (319)
T 3frx_A 187 QIEADFIGHNSNINTLTASPDGTLIASAGKD-GEIMLWNLAAKKAMY---------------TLSAQ--DEVFSLAFSPN 248 (319)
T ss_dssp EEEEEECCCCSCEEEEEECTTSSEEEEEETT-CEEEEEETTTTEEEE---------------EEECC--SCEEEEEECSS
T ss_pred hhheeecCCCCcEEEEEEcCCCCEEEEEeCC-CeEEEEECCCCcEEE---------------EecCC--CcEEEEEEcCC
Confidence 4332 2245666655555544 567788876653221 12222 45899999 88
Q ss_pred CCeeeeecCCCCCChhHHHH
Q 008510 206 GEPTRKLPYNRSDNPYDAAD 225 (563)
Q Consensus 206 g~~~~~~~~n~~~~~w~~a~ 225 (563)
|..++.. .+.++++|+...
T Consensus 249 ~~~la~~-~~~~i~v~~~~~ 267 (319)
T 3frx_A 249 RYWLAAA-TATGIKVFSLDP 267 (319)
T ss_dssp SSEEEEE-ETTEEEEEEETT
T ss_pred CCEEEEE-cCCCcEEEEeCc
Confidence 8766554 455678887643
No 25
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.85 E-value=2.6e-20 Score=192.82 Aligned_cols=58 Identities=24% Similarity=0.284 Sum_probs=45.0
Q ss_pred CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK 59 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd 59 (563)
+|++|+|||.||+|++||. +++++.++.+|...|.+++|+|+| .+++|+.|+++++|+
T Consensus 77 ~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~ 136 (380)
T 3iz6_a 77 EKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFN 136 (380)
T ss_dssp TSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEE
T ss_pred CCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEE
Confidence 5788999999999999999 788888888887777777777766 555555555555555
No 26
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=99.85 E-value=7.9e-20 Score=201.43 Aligned_cols=100 Identities=28% Similarity=0.414 Sum_probs=93.5
Q ss_pred EEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEE--------ecCCc
Q 008510 5 GIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSI--------EHPGC 72 (563)
Q Consensus 5 ~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l--------~h~~~ 72 (563)
.|++||.|++|++||. +++++.++.+|...|++++|+|+| .++||+.|++|++|| +++++..+ .|.+.
T Consensus 162 ~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~ 241 (611)
T 1nr0_A 162 RIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGS 241 (611)
T ss_dssp EEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSC
T ss_pred EEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCC
Confidence 6999999999999999 789999999999999999999999 999999999999999 78888877 48889
Q ss_pred EEEEEEccCCc-EEEEeCCCcEEEEEcCCCcee
Q 008510 73 VWDAKFLENGD-IVTACSDGVTRIWTVHSDKVA 104 (563)
Q Consensus 73 V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~ 104 (563)
|++++|+|+|+ +++|+.|++|++||+++++..
T Consensus 242 V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~ 274 (611)
T 1nr0_A 242 VFGLTWSPDGTKIASASADKTIKIWNVATLKVE 274 (611)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTTEEE
T ss_pred EEEEEECCCCCEEEEEeCCCeEEEEeCCCCcee
Confidence 99999999998 999999999999999987654
No 27
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.85 E-value=6.1e-20 Score=191.48 Aligned_cols=209 Identities=16% Similarity=0.197 Sum_probs=160.4
Q ss_pred CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEEE
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDA 76 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~v 76 (563)
+|++|++|+.||+|++||+ ++++...+.+|.+.|++++|+|++ .+++|+.|++|++|| ++++++.+. |...|+++
T Consensus 108 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~ 187 (420)
T 3vl1_A 108 QMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDI 187 (420)
T ss_dssp SSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEE
T ss_pred CCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEE
Confidence 5789999999999999999 788888888999999999999999 999999999999999 788888888 99999999
Q ss_pred EEccCCc-EEEEeCCCcEEEEEcCCCceeceeeecc-cc-----------------------------cccceeEEeecc
Q 008510 77 KFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEA-YA-----------------------------SELSQYKLCRKK 125 (563)
Q Consensus 77 ~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~-~~-----------------------------~~v~~~~~~~~~ 125 (563)
+|+|+|. +++|+.||.|++||+++++......... +. ..-....+++..
T Consensus 188 ~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 267 (420)
T 3vl1_A 188 AIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHV 267 (420)
T ss_dssp EEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEET
T ss_pred EEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcC
Confidence 9999998 9999999999999999887543322110 00 012246677888
Q ss_pred CCceEEEeCCCCceeeec------------ccCCCe-EEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecC
Q 008510 126 VGGLKLEDLPGLEALQIP------------GTNAGQ-TKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDG 192 (563)
Q Consensus 126 ~~~i~~~d~~~~~~l~~~------------g~~dg~-~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g 192 (563)
++.|++||++....+... .+++|. +.+..+ .++.+++||...+. .....+.+
T Consensus 268 dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~-~dg~i~vwd~~~~~--------------~~~~~~~~ 332 (420)
T 3vl1_A 268 SGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGY-ENGMLAQWDLRSPE--------------CPVGEFLI 332 (420)
T ss_dssp TSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEE-TTSEEEEEETTCTT--------------SCSEEEEE
T ss_pred CCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEe-CCCeEEEEEcCCCc--------------Cchhhhhc
Confidence 999999999876543322 344554 333333 33556677765431 01234555
Q ss_pred cccCcEEEEEcCCCCeeeeecCCCCCChhHHHH
Q 008510 193 IQYDYVFDVDIGDGEPTRKLPYNRSDNPYDAAD 225 (563)
Q Consensus 193 ~~~d~v~~vd~~dg~~~~~~~~n~~~~~w~~a~ 225 (563)
++...|..+.+++|..+++.+.|+.+++|++..
T Consensus 333 ~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~ 365 (420)
T 3vl1_A 333 NEGTPINNVYFAAGALFVSSGFDTSIKLDIISD 365 (420)
T ss_dssp STTSCEEEEEEETTEEEEEETTTEEEEEEEECC
T ss_pred cCCCCceEEEeCCCCEEEEecCCccEEEEeccC
Confidence 455678888778888999999999999999753
No 28
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.85 E-value=5.7e-20 Score=187.70 Aligned_cols=185 Identities=18% Similarity=0.307 Sum_probs=140.0
Q ss_pred CCCEEEEEECCCcEEEEcC-CCcee--EE-EecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CC--ceeEEEe-cCC
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVL--ME-MVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DG--VCVQSIE-HPG 71 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i--~~-l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~--~~~~~l~-h~~ 71 (563)
+|++|++||.|++|++|++ .+... .. ..+|...|.+++|+|+| .+++|+.|+++++|+ .+ +++.++. |..
T Consensus 27 ~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~ 106 (345)
T 3fm0_A 27 AGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHEN 106 (345)
T ss_dssp TSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSS
T ss_pred CCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCC
Confidence 5789999999999999999 55432 22 36899999999999999 999999999999999 33 4567777 999
Q ss_pred cEEEEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccccceeEEeeccCCceEEEeCCCCceeeecccCCCeE
Q 008510 72 CVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLCRKKVGGLKLEDLPGLEALQIPGTNAGQT 150 (563)
Q Consensus 72 ~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~d~~~~~~l~~~g~~dg~~ 150 (563)
.|++++|+|+|+ +++|+.|++|++||++++..... +.........+.....+++|.+
T Consensus 107 ~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~----------------------~~~~~~h~~~v~~~~~~p~~~~ 164 (345)
T 3fm0_A 107 EVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYEC----------------------VSVLNSHTQDVKHVVWHPSQEL 164 (345)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEE----------------------EEEECCCCSCEEEEEECSSSSC
T ss_pred CceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEE----------------------EEEecCcCCCeEEEEECCCCCE
Confidence 999999999998 99999999999999987642110 1111112222333345666766
Q ss_pred EEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeeeecCCCCCChhHH
Q 008510 151 KVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRKLPYNRSDNPYDA 223 (563)
Q Consensus 151 ~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~~~~~w~~ 223 (563)
.+..+.+ +.+.+|+...+.|.... .+.||. +.|.++.+ ++|+.+++.+.|+++++|+.
T Consensus 165 l~s~s~d-~~i~~w~~~~~~~~~~~-------------~~~~h~-~~v~~l~~sp~g~~l~s~s~D~~v~iW~~ 223 (345)
T 3fm0_A 165 LASASYD-DTVKLYREEEDDWVCCA-------------TLEGHE-STVWSLAFDPSGQRLASCSDDRTVRIWRQ 223 (345)
T ss_dssp EEEEETT-SCEEEEEEETTEEEEEE-------------EECCCS-SCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred EEEEeCC-CcEEEEEecCCCEEEEE-------------EecCCC-CceEEEEECCCCCEEEEEeCCCeEEEecc
Confidence 6666555 45567887666554322 245555 67999999 99999999999999999985
No 29
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.84 E-value=1.1e-19 Score=189.00 Aligned_cols=217 Identities=18% Similarity=0.319 Sum_probs=155.8
Q ss_pred CCCEEEEEECCCcEEEEcC-CCceeEEEecCCC------------------cEEEEEEcCCC-eEEEEeCCCcEEEEc--
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTA------------------IVYSIDSHASG-LIVSGSEDRFAKIWK-- 59 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~------------------~V~~v~~~p~g-~l~s~s~D~tvriWd-- 59 (563)
+|++|++|+ |+++++|++ +|+.+..+.+|.. .|.+++|+|+| .+++|+.|++|++||
T Consensus 75 dg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~ 153 (393)
T 1erj_A 75 DGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIE 153 (393)
T ss_dssp TSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred CCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEcCCCeEEEEECC
Confidence 578899876 789999999 8998888876643 49999999999 999999999999999
Q ss_pred CCceeEEEe-cCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeecc------cccccceeEEeeccCCceEE
Q 008510 60 DGVCVQSIE-HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEA------YASELSQYKLCRKKVGGLKL 131 (563)
Q Consensus 60 ~~~~~~~l~-h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~i~~ 131 (563)
+++++..+. |...|++++|+|+|+ +++|+.|++|++||+++++......... +...-....+++..++.|++
T Consensus 154 ~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~i 233 (393)
T 1erj_A 154 NRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRV 233 (393)
T ss_dssp TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEE
T ss_pred CCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEE
Confidence 777888887 999999999999998 9999999999999999987543322111 11112345667888999999
Q ss_pred EeCCCCceee------------------ecccCCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCc
Q 008510 132 EDLPGLEALQ------------------IPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGI 193 (563)
Q Consensus 132 ~d~~~~~~l~------------------~~g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~ 193 (563)
||+.....+. ...+++|...+..+.| +.+.+||......... .. ....+.....+.||
T Consensus 234 wd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d-~~v~~wd~~~~~~~~~--~~-~~~~~~~~~~~~~h 309 (393)
T 1erj_A 234 WDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLD-RSVKLWNLQNANNKSD--SK-TPNSGTCEVTYIGH 309 (393)
T ss_dssp EETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETT-SEEEEEEC------------------CEEEEEECC
T ss_pred EECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCC-CEEEEEECCCCCCccc--cc-CCCCCcceEEEecc
Confidence 9987654332 2244566555554444 5567787654321100 00 00011123356777
Q ss_pred ccCcEEEEEc-CCCCeeeeecCCCCCChhHHH
Q 008510 194 QYDYVFDVDI-GDGEPTRKLPYNRSDNPYDAA 224 (563)
Q Consensus 194 ~~d~v~~vd~-~dg~~~~~~~~n~~~~~w~~a 224 (563)
. ++|.++.+ ++|..+++++.|+.+.+|+..
T Consensus 310 ~-~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~ 340 (393)
T 1erj_A 310 K-DFVLSVATTQNDEYILSGSKDRGVLFWDKK 340 (393)
T ss_dssp S-SCEEEEEECGGGCEEEEEETTSEEEEEETT
T ss_pred c-CcEEEEEECCCCCEEEEEeCCCeEEEEECC
Confidence 6 88999999 899999999999999999974
No 30
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=99.84 E-value=2.3e-19 Score=182.69 Aligned_cols=206 Identities=17% Similarity=0.200 Sum_probs=157.0
Q ss_pred CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CC----ceeEEEe-cCCc
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DG----VCVQSIE-HPGC 72 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~----~~~~~l~-h~~~ 72 (563)
+|++|++||.||+|++||. +++++..+.+|...|.+++|+|+| .+++|+.|++|++|+ ++ .....+. |.+.
T Consensus 66 d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~ 145 (340)
T 1got_B 66 DSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGY 145 (340)
T ss_dssp TSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSC
T ss_pred CCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCcc
Confidence 5789999999999999999 899999999999999999999999 999999999999999 32 2445555 8899
Q ss_pred EEEEEEccCCcEEEEeCCCcEEEEEcCCCceeceeeecccccccc--------eeEEeeccCCceEEEeCCCCceeee--
Q 008510 73 VWDAKFLENGDIVTACSDGVTRIWTVHSDKVADSLELEAYASELS--------QYKLCRKKVGGLKLEDLPGLEALQI-- 142 (563)
Q Consensus 73 V~~v~~~p~g~i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~--------~~~~~~~~~~~i~~~d~~~~~~l~~-- 142 (563)
|.++.|++++.+++++.|++|++||+++++... .+..+...+. ...+++..++.|++||++.......
T Consensus 146 v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~--~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~ 223 (340)
T 1got_B 146 LSCCRFLDDNQIVTSSGDTTCALWDIETGQQTT--TFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFT 223 (340)
T ss_dssp EEEEEEEETTEEEEEETTSCEEEEETTTTEEEE--EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEEC
T ss_pred EEEEEECCCCcEEEEECCCcEEEEECCCCcEEE--EEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEc
Confidence 999999999899999999999999999987443 3333433332 3556778899999999987654432
Q ss_pred ---------cccCCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeeee
Q 008510 143 ---------PGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRKL 212 (563)
Q Consensus 143 ---------~g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~ 212 (563)
..+++|...+..+.| +.+.+||...+..... .. ..++ ...|.++.+ ++|..++.+
T Consensus 224 ~h~~~v~~v~~~p~~~~l~s~s~d-~~v~iwd~~~~~~~~~---~~----------~~~~-~~~v~~~~~s~~g~~l~~g 288 (340)
T 1got_B 224 GHESDINAICFFPNGNAFATGSDD-ATCRLFDLRADQELMT---YS----------HDNI-ICGITSVSFSKSGRLLLAG 288 (340)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETT-SCEEEEETTTTEEEEE---EC----------CTTC-CSCEEEEEECTTSSEEEEE
T ss_pred CCcCCEEEEEEcCCCCEEEEEcCC-CcEEEEECCCCcEEEE---Ec----------cCCc-ccceEEEEECCCCCEEEEE
Confidence 234555555544444 4556787665432111 00 0111 134889999 999999999
Q ss_pred cCCCCCChhHHH
Q 008510 213 PYNRSDNPYDAA 224 (563)
Q Consensus 213 ~~n~~~~~w~~a 224 (563)
..|+.+++|++.
T Consensus 289 ~~d~~i~vwd~~ 300 (340)
T 1got_B 289 YDDFNCNVWDAL 300 (340)
T ss_dssp ETTSEEEEEETT
T ss_pred CCCCeEEEEEcc
Confidence 999999999974
No 31
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=99.84 E-value=1.9e-19 Score=184.03 Aligned_cols=154 Identities=16% Similarity=0.128 Sum_probs=124.1
Q ss_pred CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC--eEEEEeCCCcEEEEc--CCceeEEEe---cCCcE
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK--DGVCVQSIE---HPGCV 73 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g--~l~s~s~D~tvriWd--~~~~~~~l~---h~~~V 73 (563)
+|++|++|+.|++|++||+ +++++.++.+|.+.|++++|+|++ .++||+.|++|++|| ++++...+. |...+
T Consensus 138 dg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~ 217 (344)
T 4gqb_B 138 SGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLP 217 (344)
T ss_dssp TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCE
T ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccc
Confidence 5889999999999999999 899999999999999999999987 689999999999999 778887775 44579
Q ss_pred EEEEEccCC-c-EEEEeCCCcEEEEEcCCCceeceeeecccccccc---------eeEEeeccCCceEEEeCCCCceeee
Q 008510 74 WDAKFLENG-D-IVTACSDGVTRIWTVHSDKVADSLELEAYASELS---------QYKLCRKKVGGLKLEDLPGLEALQI 142 (563)
Q Consensus 74 ~~v~~~p~g-~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~---------~~~~~~~~~~~i~~~d~~~~~~l~~ 142 (563)
.+++|+|++ . +++|+.||+|++||+++++... .+..|...+. .+.+++..|+.|++||+...+.+..
T Consensus 218 ~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~--~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~ 295 (344)
T 4gqb_B 218 TSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVL--SSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRS 295 (344)
T ss_dssp EEEEECSSCTTEEEEEETTSEEEEEESCC--CCE--EEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEE
T ss_pred eeeeecCCCCcceEEeccCCcEEEEECCCCcEEE--EEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEE
Confidence 999999965 4 7899999999999999887443 3344444332 3455677889999999998887766
Q ss_pred cccCCCeEEEEecCC
Q 008510 143 PGTNAGQTKVVREGD 157 (563)
Q Consensus 143 ~g~~dg~~~l~~~~~ 157 (563)
.+|.+....+.++++
T Consensus 296 ~~H~~~V~~v~~sp~ 310 (344)
T 4gqb_B 296 QAHRDFVRDATWSPL 310 (344)
T ss_dssp CCCSSCEEEEEECSS
T ss_pred cCCCCCEEEEEEeCC
Confidence 677766666655544
No 32
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.84 E-value=1.1e-19 Score=184.96 Aligned_cols=210 Identities=17% Similarity=0.205 Sum_probs=159.3
Q ss_pred CCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcC-CC-eEEEEeCCCcEEEEc--CCceeEEE---e-cCCcE
Q 008510 3 GVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHA-SG-LIVSGSEDRFAKIWK--DGVCVQSI---E-HPGCV 73 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p-~g-~l~s~s~D~tvriWd--~~~~~~~l---~-h~~~V 73 (563)
|.+|++|+.||+|++||+ +++++..+.+|...|.+++|+| ++ .+++|+.|++|++|| +++.+..+ . |...|
T Consensus 85 ~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v 164 (366)
T 3k26_A 85 HPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEV 164 (366)
T ss_dssp CEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCE
T ss_pred CCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCce
Confidence 679999999999999999 8999999999999999999999 77 899999999999999 77888887 3 88899
Q ss_pred EEEEEccCCc-EEEEeCCCcEEEEEcCCCceeceee--------------------------eccccccc------ceeE
Q 008510 74 WDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLE--------------------------LEAYASEL------SQYK 120 (563)
Q Consensus 74 ~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~--------------------------~~~~~~~v------~~~~ 120 (563)
.+++|+|+|. +++|+.||.|++||+++++...... ...+...+ ....
T Consensus 165 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l 244 (366)
T 3k26_A 165 LSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLGDLI 244 (366)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEETTEE
T ss_pred eEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEcCCEE
Confidence 9999999998 9999999999999999875321110 00122222 3456
Q ss_pred EeeccCCceEEEeCCCCce--------------ee-----------ecccCC--CeEEEEecCCCeEEEEEecccceEEE
Q 008510 121 LCRKKVGGLKLEDLPGLEA--------------LQ-----------IPGTNA--GQTKVVREGDNGVAYSWDMKEQKWDK 173 (563)
Q Consensus 121 ~~~~~~~~i~~~d~~~~~~--------------l~-----------~~g~~d--g~~~l~~~~~~~~~~~wd~~~~~w~~ 173 (563)
+++..++.|++||+..... +. ...+++ |.+.+..+.+ +.+++|+...+...
T Consensus 245 ~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~d-g~i~vwd~~~~~~~- 322 (366)
T 3k26_A 245 LSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQV-GKLYVWDLEVEDPH- 322 (366)
T ss_dssp EEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTT-SCEEEEECCSSSGG-
T ss_pred EEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecC-CcEEEEECCCCCCc-
Confidence 6778899999999876532 11 123445 7666666555 56778887654210
Q ss_pred eCcEeeCCCCCCCceeecCcc-cCcEEEEEc-CCCCeeeeecCCCCCChhHHH
Q 008510 174 LGEVVDGPDDGMNRPILDGIQ-YDYVFDVDI-GDGEPTRKLPYNRSDNPYDAA 224 (563)
Q Consensus 174 ~g~v~~~~~~~~~~~~~~g~~-~d~v~~vd~-~dg~~~~~~~~n~~~~~w~~a 224 (563)
.. ....+.++. ...|.++.+ ++|+.+++...|+.+.+|++.
T Consensus 323 -~~---------~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 323 -KA---------KCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp -GC---------EEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred -cc---------cceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 00 111344442 367999999 899999999999999999863
No 33
>2k89_A PLA2P, PLAP, phospholipase A-2-activating protein; ubiquitin binding, WD repeat, protein binding; NMR {Homo sapiens} PDB: 2k8a_A 2k8b_B 2k8c_B
Probab=99.84 E-value=3.7e-21 Score=145.54 Aligned_cols=70 Identities=36% Similarity=0.722 Sum_probs=66.9
Q ss_pred CCceeecCcccCcEEEEEcCCCCeeeeecCCCCCChhHHHHHHHHhcCCCcccHHHHHHHHHHhcCCCCc
Q 008510 185 MNRPILDGIQYDYVFDVDIGDGEPTRKLPYNRSDNPYDAADKWLLKENLPFSYRQQIVEFILQNTGQKDF 254 (563)
Q Consensus 185 ~~~~~~~g~~~d~v~~vd~~dg~~~~~~~~n~~~~~w~~a~~f~~~~~l~~~~~~~v~~fi~~n~~~~~~ 254 (563)
.++..|+|++|||||+||+++|.+.+++|||.+++||.+|++||++|+||++|++||++||++|++++++
T Consensus 6 ~~k~~~~GkeYDyVFdVdi~dG~~~lkLpyN~~dnP~~aAqkFi~~n~Lp~~yldqI~~FI~~N~~~~~~ 75 (80)
T 2k89_A 6 SGKVLYEGKEFDYVFSIDVNEGGPSYKLPYNTSDDPWLTAYNFLQKNDLNPMFLDQVAKFIIDNTKGQML 75 (80)
T ss_dssp SSCEEETTEEESEEEEECCSSSCSCEEEEECTTSCHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHSTTTT
T ss_pred CCceeecCccccEEEEEEcCCCCcccccCccCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCccc
Confidence 3677999999999999999999999999999999999999999999999999999999999999998764
No 34
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=99.84 E-value=2.2e-19 Score=195.48 Aligned_cols=200 Identities=25% Similarity=0.436 Sum_probs=156.1
Q ss_pred CCCEEEEEECCCcEEEEcCCCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc-CCceeEEEe-cCCcEEEEEE
Q 008510 2 PGVGIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-DGVCVQSIE-HPGCVWDAKF 78 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd-~~~~~~~l~-h~~~V~~v~~ 78 (563)
+|+++++|+.|++|++|+.+++++.++.+|...|.+++|+|+| .+++++.|++|++|+ +++.++++. |...|++++|
T Consensus 355 ~g~~l~~~~~dg~v~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~v~~~~~ 434 (577)
T 2ymu_A 355 DGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAF 434 (577)
T ss_dssp TSSEEEEEETTSEEEEEETTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTCCEEEEEECCSSCEEEEEE
T ss_pred CCCEEEEEeCCCEEEEEcCCCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEecCCCCCeEEEEE
Confidence 5789999999999999999999999999999999999999999 899999999999999 888888888 9999999999
Q ss_pred ccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccccc--------eeEEeeccCCceEEEeCCCCceeeecc-----
Q 008510 79 LENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELS--------QYKLCRKKVGGLKLEDLPGLEALQIPG----- 144 (563)
Q Consensus 79 ~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~--------~~~~~~~~~~~i~~~d~~~~~~l~~~g----- 144 (563)
+|++. +++++.|+.|++||..... . ..+..+...+. ...+++..++.|++||..+.......+
T Consensus 435 s~d~~~l~~~~~d~~v~~w~~~~~~-~--~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~~~~~~~~~h~~~v 511 (577)
T 2ymu_A 435 SPDDQTIASASDDKTVKLWNRNGQL-L--QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSV 511 (577)
T ss_dssp CTTSSEEEEEETTSEEEEEETTSCE-E--EEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTSCEEEEEECCSSCE
T ss_pred CCCCCEEEEEcCCCEEEEEECCCCE-E--EEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCCCEEEEEeCCCCCE
Confidence 99998 9999999999999975443 2 12333333332 345567788999999976543322224
Q ss_pred -----cCCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeeeecCCCCC
Q 008510 145 -----TNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRKLPYNRSD 218 (563)
Q Consensus 145 -----~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~~~ 218 (563)
+++|.+.+..+.| +.+++||.. + +. ...+.||. +.|.++.| +||+.+++.+.|+++
T Consensus 512 ~~l~~s~dg~~l~s~~~d-g~v~lwd~~-~------~~---------~~~~~~h~-~~v~~~~fs~dg~~l~s~~~D~~i 573 (577)
T 2ymu_A 512 RGVAFSPDGQTIASASDD-KTVKLWNRN-G------QL---------LQTLTGHS-SSVWGVAFSPDGQTIASASSDKTV 573 (577)
T ss_dssp EEEEECTTSSCEEEEETT-SEEEEECTT-S------CE---------EEEEECCS-SCEEEEEECTTSSCEEEEETTSCE
T ss_pred EEEEEcCCCCEEEEEECc-CEEEEEeCC-C------CE---------EEEEcCCC-CCEEEEEEcCCCCEEEEEeCCCEE
Confidence 4455544444333 445666642 1 11 22356776 78999999 999999999999999
Q ss_pred ChhH
Q 008510 219 NPYD 222 (563)
Q Consensus 219 ~~w~ 222 (563)
++|+
T Consensus 574 ~~Wd 577 (577)
T 2ymu_A 574 KLWN 577 (577)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9995
No 35
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.83 E-value=2.9e-19 Score=199.84 Aligned_cols=217 Identities=24% Similarity=0.238 Sum_probs=157.7
Q ss_pred CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc-CCceeEEEe-----cCCcE
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-DGVCVQSIE-----HPGCV 73 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd-~~~~~~~l~-----h~~~V 73 (563)
+|++|+|||.||+|++||+ ++++++++.+|...|.+++|+|++ .++|||.|++|++|| .+.+...+. |...|
T Consensus 441 ~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v 520 (694)
T 3dm0_A 441 DGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWV 520 (694)
T ss_dssp TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCE
T ss_pred CCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcE
Confidence 5789999999999999999 899999999999999999999999 999999999999999 666665553 77789
Q ss_pred EEEEEccCC--c-EEEEeCCCcEEEEEcCCCceeceeeecccccccc--------eeEEeeccCCceEEEeCCCCceeee
Q 008510 74 WDAKFLENG--D-IVTACSDGVTRIWTVHSDKVADSLELEAYASELS--------QYKLCRKKVGGLKLEDLPGLEALQI 142 (563)
Q Consensus 74 ~~v~~~p~g--~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~--------~~~~~~~~~~~i~~~d~~~~~~l~~ 142 (563)
.+++|+|++ . +++|+.|++|++||+++++... .+..|...+. ...+++..++.|++||+.....+..
T Consensus 521 ~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~--~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~ 598 (694)
T 3dm0_A 521 SCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRS--TLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYS 598 (694)
T ss_dssp EEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEE--EECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEEC
T ss_pred EEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEE--EEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEE
Confidence 999999987 3 8999999999999999877432 3344443332 4556778899999999987655433
Q ss_pred c----------ccCCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecC-----cccCcEEEEEc-CCC
Q 008510 143 P----------GTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDG-----IQYDYVFDVDI-GDG 206 (563)
Q Consensus 143 ~----------g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g-----~~~d~v~~vd~-~dg 206 (563)
. .++++.+...... ..+.+||...+.......... ..........| ..--++.++.+ +||
T Consensus 599 ~~~~~~v~~~~~sp~~~~l~~~~~--~~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg 674 (694)
T 3dm0_A 599 LEANSVIHALCFSPNRYWLCAATE--HGIKIWDLESKSIVEDLKVDL--KAEAEKADNSGPAATKRKVIYCTSLNWSADG 674 (694)
T ss_dssp CBCSSCEEEEEECSSSSEEEEEET--TEEEEEETTTTEEEEEECCCC--C----------------CCCCEEEEEECTTS
T ss_pred ecCCCcEEEEEEcCCCcEEEEEcC--CCEEEEECCCCCChhhhcccc--ccccccccccccccCCceeEEeeeEEEcCCC
Confidence 2 4455554444332 236789987765432211100 00000000000 11135788999 999
Q ss_pred CeeeeecCCCCCChhHHH
Q 008510 207 EPTRKLPYNRSDNPYDAA 224 (563)
Q Consensus 207 ~~~~~~~~n~~~~~w~~a 224 (563)
+.+++++.|+.+++|++.
T Consensus 675 ~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 675 STLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp SEEEEEETTSEEEEEEC-
T ss_pred CEEEEEcCCCeEEEEecc
Confidence 999999999999999874
No 36
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.83 E-value=1.2e-18 Score=177.38 Aligned_cols=205 Identities=17% Similarity=0.179 Sum_probs=150.3
Q ss_pred CCCEEEEEECCCcEEEEcC-C-Ccee-EEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEecCCcEEE
Q 008510 2 PGVGIISASHDCTIRLWAL-T-GQVL-MEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIEHPGCVWD 75 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~-g~~i-~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~h~~~V~~ 75 (563)
+|++|++|+.||+|++||+ + +..+ ..+.+|...|.+++|+|++ .+++|+.|++|++|| +++++....|...|++
T Consensus 53 ~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~ 132 (368)
T 3mmy_A 53 PGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKT 132 (368)
T ss_dssp SSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEE
T ss_pred CceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceeeccccCceEE
Confidence 4789999999999999999 4 6665 7889999999999999999 999999999999999 6677776669999999
Q ss_pred EEE--ccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccc---------------------------------------
Q 008510 76 AKF--LENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYA--------------------------------------- 113 (563)
Q Consensus 76 v~~--~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~--------------------------------------- 113 (563)
++| +|++. +++|+.||.|++||+++++...........
T Consensus 133 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 212 (368)
T 3mmy_A 133 IHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLK 212 (368)
T ss_dssp EEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCS
T ss_pred EEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhcccccc
Confidence 999 88888 999999999999999987643222211000
Q ss_pred ccc------------ceeEEeeccCCceEEEeCCCCc--------------------------eeeecccCCCeEEEEec
Q 008510 114 SEL------------SQYKLCRKKVGGLKLEDLPGLE--------------------------ALQIPGTNAGQTKVVRE 155 (563)
Q Consensus 114 ~~v------------~~~~~~~~~~~~i~~~d~~~~~--------------------------~l~~~g~~dg~~~l~~~ 155 (563)
... ....+++..++.+++||+.... +.....+++|.+.+..+
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~ 292 (368)
T 3mmy_A 213 HQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVG 292 (368)
T ss_dssp SCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEE
T ss_pred CCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEc
Confidence 000 0115566677888888886542 22233566666655555
Q ss_pred CCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeeeecCCCCCChhHH
Q 008510 156 GDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRKLPYNRSDNPYDA 223 (563)
Q Consensus 156 ~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~~~~~w~~ 223 (563)
.+ +.+++||..++... ..+.++. +.|.++.+ ++|..++..+.|...+.|.+
T Consensus 293 ~d-g~i~iwd~~~~~~~---------------~~~~~~~-~~v~~~~~s~~g~~l~~~s~d~~~~~~~~ 344 (368)
T 3mmy_A 293 SD-GRFSFWDKDARTKL---------------KTSEQLD-QPISACCFNHNGNIFAYASSYDWSKGHEF 344 (368)
T ss_dssp TT-SCEEEEETTTTEEE---------------EECCCCS-SCEEEEEECTTSSCEEEEECCCSTTCGGG
T ss_pred cC-CeEEEEECCCCcEE---------------EEecCCC-CCceEEEECCCCCeEEEEecccccccccc
Confidence 54 44667776654322 1234444 67999999 99999999988776665553
No 37
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.82 E-value=4.7e-19 Score=179.72 Aligned_cols=209 Identities=16% Similarity=0.201 Sum_probs=142.7
Q ss_pred CCEEEEEECCCcEEEEcC-CC--ceeEEE-ec-CCCcEEEEEEcCCC-eEEEEeCCCcEEEEc-C--------CceeEEE
Q 008510 3 GVGIISASHDCTIRLWAL-TG--QVLMEM-VG-HTAIVYSIDSHASG-LIVSGSEDRFAKIWK-D--------GVCVQSI 67 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~-~g--~~i~~l-~g-H~~~V~~v~~~p~g-~l~s~s~D~tvriWd-~--------~~~~~~l 67 (563)
+++|++|+.|++|++|++ .+ +++..+ .+ |...|++++|+|++ .+++|+.|++|+||+ . .+++..+
T Consensus 24 ~~~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~ 103 (330)
T 2hes_X 24 QGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAII 103 (330)
T ss_dssp TTEEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEE
T ss_pred CCEEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEE
Confidence 348999999999999999 43 456666 45 99999999999999 999999999999998 2 2355666
Q ss_pred e-cCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCC-ce-eceeeecccccccc--------eeEEeeccCCceEEEeCC
Q 008510 68 E-HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSD-KV-ADSLELEAYASELS--------QYKLCRKKVGGLKLEDLP 135 (563)
Q Consensus 68 ~-h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~-~~-~~~~~~~~~~~~v~--------~~~~~~~~~~~i~~~d~~ 135 (563)
. |...|++++|+|+|+ |++|+.|++|++||++.. +. .....+..|...+. ...+++..|+.|++||..
T Consensus 104 ~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~ 183 (330)
T 2hes_X 104 EGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDY 183 (330)
T ss_dssp C----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEE
T ss_pred cCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECC
Confidence 6 999999999999998 999999999999999543 21 11223344444333 455677889999999986
Q ss_pred CC--ceee-ecccCCCeEEEEecC-----------CCeEEEEEecccc------eEEEeCcEeeCCCCCCCceeecCccc
Q 008510 136 GL--EALQ-IPGTNAGQTKVVREG-----------DNGVAYSWDMKEQ------KWDKLGEVVDGPDDGMNRPILDGIQY 195 (563)
Q Consensus 136 ~~--~~l~-~~g~~dg~~~l~~~~-----------~~~~~~~wd~~~~------~w~~~g~v~~~~~~~~~~~~~~g~~~ 195 (563)
.. +.+. ..+|......+..++ .++.+.+|+...+ .|. ....+.+.+.
T Consensus 184 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~-------------~~~~~~~~h~ 250 (330)
T 2hes_X 184 DDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWV-------------CEAILPDVHK 250 (330)
T ss_dssp TTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEE-------------EEEECCSCCS
T ss_pred CCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeE-------------Eeeecccccc
Confidence 54 2222 224444333333332 2244455654322 111 1112334233
Q ss_pred CcEEEEEcCCCCeeeeecCCCCCChhHHH
Q 008510 196 DYVFDVDIGDGEPTRKLPYNRSDNPYDAA 224 (563)
Q Consensus 196 d~v~~vd~~dg~~~~~~~~n~~~~~w~~a 224 (563)
+.|+++.+.++..+++.+.|+.+++|+..
T Consensus 251 ~~v~~v~~s~~~~l~s~~~dg~v~iw~~~ 279 (330)
T 2hes_X 251 RQVYNVAWGFNGLIASVGADGVLAVYEEV 279 (330)
T ss_dssp SCEEEEEECTTSCEEEEETTSCEEEEEEE
T ss_pred cceEEEEEcCCCEEEEEeCCCEEEEEEcC
Confidence 77999999555579999999999999864
No 38
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=99.82 E-value=2.1e-19 Score=184.52 Aligned_cols=205 Identities=15% Similarity=0.135 Sum_probs=142.9
Q ss_pred CCCEEEEEEC------CCcEEEEcC-CCc----eeEEEecCCCcEEEEEEcCCCeEEEEeCCCcEEEEc--CCceeE---
Q 008510 2 PGVGIISASH------DCTIRLWAL-TGQ----VLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWK--DGVCVQ--- 65 (563)
Q Consensus 2 ~g~~l~s~s~------DgtIrlWd~-~g~----~i~~l~gH~~~V~~v~~~p~g~l~s~s~D~tvriWd--~~~~~~--- 65 (563)
||++|++||. |++|++|+. ++. ......+|...|++++|+|++.+++++.|++|+||| ++++..
T Consensus 53 DG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~ 132 (357)
T 4g56_B 53 DGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNK 132 (357)
T ss_dssp SSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCCC
T ss_pred CCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEe
Confidence 6899999998 788999998 543 334556899999999999999778899999999999 444322
Q ss_pred -EE-ecCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccccc---------eeEEeeccCCceEEEe
Q 008510 66 -SI-EHPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELS---------QYKLCRKKVGGLKLED 133 (563)
Q Consensus 66 -~l-~h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~---------~~~~~~~~~~~i~~~d 133 (563)
.. .|...|++++|+|+|+ +++|+.|+.|++||.++++.... +..+...+. ...+++..++.|++||
T Consensus 133 ~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~--~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd 210 (357)
T 4g56_B 133 FAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKS--YNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWD 210 (357)
T ss_dssp EEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEE--ECCCSSCEEEEEECTTCSSCEEEEETTSCEEECC
T ss_pred eccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEE--EcCCCCCEEEEEEccCCCceeeeeccCCceEEEE
Confidence 22 3888999999999998 99999999999999999875432 333333322 3455677889999999
Q ss_pred CCCCceeeec-------------ccCCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEE
Q 008510 134 LPGLEALQIP-------------GTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFD 200 (563)
Q Consensus 134 ~~~~~~l~~~-------------g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~ 200 (563)
+...+..... .++++...++....+..+++||...+. ..+.+.++. +.|.+
T Consensus 211 ~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~---------------~~~~~~~~~-~~v~~ 274 (357)
T 4g56_B 211 TRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPD---------------SAQTSAVHS-QNITG 274 (357)
T ss_dssp TTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGG---------------GCEEECCCS-SCEEE
T ss_pred CCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCc---------------EeEEEeccc-eeEEE
Confidence 9766543221 233322222222222344566654331 233466665 67999
Q ss_pred EEc-CCCC-eeeeecCCCCCChhHHH
Q 008510 201 VDI-GDGE-PTRKLPYNRSDNPYDAA 224 (563)
Q Consensus 201 vd~-~dg~-~~~~~~~n~~~~~w~~a 224 (563)
+.| ++|. .+++++.|+++++|++.
T Consensus 275 l~~sp~~~~~lasgs~D~~i~iwd~~ 300 (357)
T 4g56_B 275 LAYSYHSSPFLASISEDCTVAVLDAD 300 (357)
T ss_dssp EEECSSSSCCEEEEETTSCEEEECTT
T ss_pred EEEcCCCCCEEEEEeCCCEEEEEECC
Confidence 999 7775 57899999999999874
No 39
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=99.82 E-value=4.3e-19 Score=195.53 Aligned_cols=220 Identities=13% Similarity=0.122 Sum_probs=163.4
Q ss_pred CCCEEEEEECCCcEEEEcC-CC--ceeEEEecCCCcEEEEEEcCCC-eEEEEeCC----CcEEEEcCCceeEEEe-cCCc
Q 008510 2 PGVGIISASHDCTIRLWAL-TG--QVLMEMVGHTAIVYSIDSHASG-LIVSGSED----RFAKIWKDGVCVQSIE-HPGC 72 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g--~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D----~tvriWd~~~~~~~l~-h~~~ 72 (563)
+|++|+||+.|++|||||+ ++ .+..++.+|.+.|.+++|+|+| .+++++.| ++|++||.+++..++. |...
T Consensus 70 dg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~ 149 (611)
T 1nr0_A 70 SGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARA 149 (611)
T ss_dssp TSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSC
T ss_pred CCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCCcceecCCCCC
Confidence 5899999999999999998 43 3567889999999999999999 88888876 4799999666777777 9999
Q ss_pred EEEEEEccCCc--EEEEeCCCcEEEEEcCCCceeceeeecccccccc--------eeEEeeccCCceEEEeCCCCceee-
Q 008510 73 VWDAKFLENGD--IVTACSDGVTRIWTVHSDKVADSLELEAYASELS--------QYKLCRKKVGGLKLEDLPGLEALQ- 141 (563)
Q Consensus 73 V~~v~~~p~g~--i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~--------~~~~~~~~~~~i~~~d~~~~~~l~- 141 (563)
|++++|+|++. +++|+.|++|++||..+++... .+..|...+. ...+++..|+.|++||+...+.+.
T Consensus 150 v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~--~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~ 227 (611)
T 1nr0_A 150 MNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKS--TFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGV 227 (611)
T ss_dssp EEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEE--EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE
T ss_pred ceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEee--eeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeee
Confidence 99999999985 8999999999999998876432 3445554443 345577889999999986543322
Q ss_pred -----------------ecccCCCeEEEEecCCCeEEEEEecccceEEEeCc------------------EeeCCCCC--
Q 008510 142 -----------------IPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGE------------------VVDGPDDG-- 184 (563)
Q Consensus 142 -----------------~~g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~------------------v~~~~~~~-- 184 (563)
...+++|...+..+.| +.+.+||..++.+...-. ++....++
T Consensus 228 ~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D-~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i 306 (611)
T 1nr0_A 228 FEDDSLKNVAHSGSVFGLTWSPDGTKIASASAD-KTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFI 306 (611)
T ss_dssp CBCTTSSSCSSSSCEEEEEECTTSSEEEEEETT-SEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCE
T ss_pred eccccccccccCCCEEEEEECCCCCEEEEEeCC-CeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcE
Confidence 2245566655555544 567789987766543210 00000000
Q ss_pred --------CCceeecCcccCcEEEEEc-CCCCeeeeecCCCCCChhHHHH
Q 008510 185 --------MNRPILDGIQYDYVFDVDI-GDGEPTRKLPYNRSDNPYDAAD 225 (563)
Q Consensus 185 --------~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~~~~~w~~a~ 225 (563)
.....+.||. +.|.++.+ +||+.+++.+.|+.+++|++..
T Consensus 307 ~~~~~~~~~~~~~~~gh~-~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~ 355 (611)
T 1nr0_A 307 NFVNPELGSIDQVRYGHN-KAITALSSSADGKTLFSADAEGHINSWDIST 355 (611)
T ss_dssp EEEETTTTEEEEEECCCS-SCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred EEEeCCCCCcceEEcCCC-CCEEEEEEeCCCCEEEEEeCCCcEEEEECCC
Confidence 0112345666 78999999 9999999999999999999864
No 40
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.82 E-value=2.2e-19 Score=193.56 Aligned_cols=205 Identities=10% Similarity=0.020 Sum_probs=143.3
Q ss_pred CCEEEEEECCCcEEEEcC-CCce----eEEEecCCCcEEEEEEcCC------C-eEEEEeCCCcEEEEc--CCce-----
Q 008510 3 GVGIISASHDCTIRLWAL-TGQV----LMEMVGHTAIVYSIDSHAS------G-LIVSGSEDRFAKIWK--DGVC----- 63 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~-~g~~----i~~l~gH~~~V~~v~~~p~------g-~l~s~s~D~tvriWd--~~~~----- 63 (563)
++.|+|||.|++|+||++ ++++ ..++.+|.+.|++++|+|+ + .|++++.|++|++|| .+.+
T Consensus 173 ~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~ 252 (524)
T 2j04_B 173 LEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVF 252 (524)
T ss_dssp ---------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEE
T ss_pred hhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccc
Confidence 456888999999999999 5554 2457788999999999996 4 899999999999999 3322
Q ss_pred ------eEEEe-cCCcEEEEEEccCCcEEEEeCCCcEEEEEcCCCceeceeeecccccc---------cc--eeEEeecc
Q 008510 64 ------VQSIE-HPGCVWDAKFLENGDIVTACSDGVTRIWTVHSDKVADSLELEAYASE---------LS--QYKLCRKK 125 (563)
Q Consensus 64 ------~~~l~-h~~~V~~v~~~p~g~i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~---------v~--~~~~~~~~ 125 (563)
..++. |...|++++|+|++.|++|+.||+|++||++++... ...+..|... .. ...++++.
T Consensus 253 ~~~~~p~~~l~~h~~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~~~-~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~ 331 (524)
T 2j04_B 253 KMCEKPSLTLSLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVP-SFYDQVHDSYILSVSTAYSDFEDTVVSTVAV 331 (524)
T ss_dssp ECCCSCSEEECCTTTCEEEEEESSSSEEEEEETTSEEEEEETTBCSSC-SEEEECSSSCEEEEEEECCTTSCCEEEEEET
T ss_pred eeecCceEEEEcCCCCEEEEEecCCCeEEEEeCCCEEEEEECCCCCCc-eEEeecccccEEEEEEEcCCCCCeEEEEecc
Confidence 23555 888999999998767999999999999999876421 1122222221 11 45677888
Q ss_pred CCceEEEeCCCCce-------------eeecccCCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecC
Q 008510 126 VGGLKLEDLPGLEA-------------LQIPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDG 192 (563)
Q Consensus 126 ~~~i~~~d~~~~~~-------------l~~~g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g 192 (563)
|+.|++||++..+. ..+..+++|...+..+.+ ..+.+||...+. ....+.|
T Consensus 332 D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d-~tv~lwd~~~~~---------------~~~~l~g 395 (524)
T 2j04_B 332 DGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGA-SSLRAVPSRAAF---------------AVHPLVS 395 (524)
T ss_dssp TSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSS-SEEEEEETTCTT---------------CCEEEEE
T ss_pred CCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCC-CcEEEEECcccc---------------cceeeec
Confidence 99999999965322 123356666664444443 556778765431 1233556
Q ss_pred cccCcEEEEEc-CCCCeeeeecCCCCCChhHHHH
Q 008510 193 IQYDYVFDVDI-GDGEPTRKLPYNRSDNPYDAAD 225 (563)
Q Consensus 193 ~~~d~v~~vd~-~dg~~~~~~~~n~~~~~w~~a~ 225 (563)
|. +.|.+|.+ ++|..+++++.|+++++|++..
T Consensus 396 H~-~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~ 428 (524)
T 2j04_B 396 RE-TTITAIGVSRLHPMVLAGSADGSLIITNAAR 428 (524)
T ss_dssp CS-SCEEEEECCSSCCBCEEEETTTEEECCBSCS
T ss_pred CC-CceEEEEeCCCCCeEEEEECCCEEEEEechH
Confidence 65 78999999 9999999999999999999754
No 41
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.82 E-value=9.6e-19 Score=179.31 Aligned_cols=156 Identities=25% Similarity=0.399 Sum_probs=123.5
Q ss_pred CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcC--CC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEE
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHA--SG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVW 74 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p--~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~ 74 (563)
++..|++||.|++|++||+ +++++.++.+|...|.+++++| +| .+++|+.|++|++|| ++++++++. |...|.
T Consensus 165 ~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~ 244 (354)
T 2pbi_B 165 SDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVN 244 (354)
T ss_dssp SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEE
T ss_pred CCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeE
Confidence 4678999999999999999 8999999999999999999987 45 899999999999999 888999888 899999
Q ss_pred EEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccc--------cceeEEeeccCCceEEEeCCCCceeeec-c
Q 008510 75 DAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASE--------LSQYKLCRKKVGGLKLEDLPGLEALQIP-G 144 (563)
Q Consensus 75 ~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~--------v~~~~~~~~~~~~i~~~d~~~~~~l~~~-g 144 (563)
+++|+|+|. +++|+.|++|++||+++++............. -....+++..++.|++||+.....+... +
T Consensus 245 ~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~ 324 (354)
T 2pbi_B 245 SVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFG 324 (354)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECC
T ss_pred EEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEEC
Confidence 999999998 99999999999999998864432221111111 1245567778899999999766654433 5
Q ss_pred cCCCeEEEEecCC
Q 008510 145 TNAGQTKVVREGD 157 (563)
Q Consensus 145 ~~dg~~~l~~~~~ 157 (563)
|.+....+..+++
T Consensus 325 h~~~v~~l~~spd 337 (354)
T 2pbi_B 325 HENRVSTLRVSPD 337 (354)
T ss_dssp CSSCEEEEEECTT
T ss_pred CCCcEEEEEECCC
Confidence 5554444444444
No 42
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.81 E-value=7.7e-19 Score=179.65 Aligned_cols=210 Identities=16% Similarity=0.212 Sum_probs=152.3
Q ss_pred CCCEEEEEECCCcEEEEcC---CCceeEEEecCCCcEEEEEEcCC--C-eEEEEeCCCcEEEEc--CCc--eeEEEe-cC
Q 008510 2 PGVGIISASHDCTIRLWAL---TGQVLMEMVGHTAIVYSIDSHAS--G-LIVSGSEDRFAKIWK--DGV--CVQSIE-HP 70 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~---~g~~i~~l~gH~~~V~~v~~~p~--g-~l~s~s~D~tvriWd--~~~--~~~~l~-h~ 70 (563)
+|++|++|+.||+|++|++ +++++..+.+|...|++++|+|+ + .+++|+.|++|++|| +++ .+..+. |.
T Consensus 22 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~ 101 (379)
T 3jrp_A 22 YGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHS 101 (379)
T ss_dssp SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCS
T ss_pred CCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCC
Confidence 5789999999999999998 35678889999999999999876 6 999999999999999 554 566666 88
Q ss_pred CcEEEEEEccC--Cc-EEEEeCCCcEEEEEcCCCceeceeeeccccccc---------------------ceeEEeeccC
Q 008510 71 GCVWDAKFLEN--GD-IVTACSDGVTRIWTVHSDKVADSLELEAYASEL---------------------SQYKLCRKKV 126 (563)
Q Consensus 71 ~~V~~v~~~p~--g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v---------------------~~~~~~~~~~ 126 (563)
..|++++|+|+ +. +++|+.|+.|++||++++.......+..+...+ ....+++..+
T Consensus 102 ~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 181 (379)
T 3jrp_A 102 ASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGAD 181 (379)
T ss_dssp SCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETT
T ss_pred cceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCC
Confidence 89999999998 77 999999999999999987543333333333221 3456677788
Q ss_pred CceEEEeCCCCcee---------------eecccCC---CeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCce
Q 008510 127 GGLKLEDLPGLEAL---------------QIPGTNA---GQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRP 188 (563)
Q Consensus 127 ~~i~~~d~~~~~~l---------------~~~g~~d---g~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~ 188 (563)
+.|++||++..... ....+++ +.+.+..+.+ +.+.+|+...+.... ...
T Consensus 182 g~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~------------~~~ 248 (379)
T 3jrp_A 182 NLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQD-RTCIIWTQDNEQGPW------------KKT 248 (379)
T ss_dssp SCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETT-SCEEEEEESSTTSCC------------EEE
T ss_pred CeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCC-CEEEEEeCCCCCccc------------eee
Confidence 99999998654311 1123444 4444444433 344566654431000 001
Q ss_pred eec-CcccCcEEEEEc-CCCCeeeeecCCCCCChhHHH
Q 008510 189 ILD-GIQYDYVFDVDI-GDGEPTRKLPYNRSDNPYDAA 224 (563)
Q Consensus 189 ~~~-g~~~d~v~~vd~-~dg~~~~~~~~n~~~~~w~~a 224 (563)
.+. ....+.|.++.+ ++|..++....|+.+.+|++.
T Consensus 249 ~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~ 286 (379)
T 3jrp_A 249 LLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 286 (379)
T ss_dssp ESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEE
T ss_pred eeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCC
Confidence 111 112367899999 999999999999999999975
No 43
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.81 E-value=3.8e-18 Score=173.59 Aligned_cols=225 Identities=19% Similarity=0.252 Sum_probs=165.6
Q ss_pred CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEecCCcEEEEE
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIEHPGCVWDAK 77 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~h~~~V~~v~ 77 (563)
+|++|++|+.||+|++||+ +++++.++.+|...|.+++|+|++ .+++++.|++|++|| +++++..+.+...|.+++
T Consensus 43 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~ 122 (369)
T 3zwl_B 43 EGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVE 122 (369)
T ss_dssp TSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSCEEEEE
T ss_pred CCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCeEEEE
Confidence 5789999999999999999 899999999999999999999999 999999999999999 788999888989999999
Q ss_pred EccCCc-EEEEeCC-----CcEEEEEcCCCceece---------eeeccccc--c--------cceeEEeeccCCceEEE
Q 008510 78 FLENGD-IVTACSD-----GVTRIWTVHSDKVADS---------LELEAYAS--E--------LSQYKLCRKKVGGLKLE 132 (563)
Q Consensus 78 ~~p~g~-i~sgs~D-----g~Irvwd~~~~~~~~~---------~~~~~~~~--~--------v~~~~~~~~~~~~i~~~ 132 (563)
|+|+|. +++++.+ +.|++||++.+..... ..+..+.. . -....+++..++.|.+|
T Consensus 123 ~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~ 202 (369)
T 3zwl_B 123 FSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKY 202 (369)
T ss_dssp ECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEE
T ss_pred EccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEE
Confidence 999999 8899988 9999999987642111 01111111 1 12355667788999999
Q ss_pred eCCC-Cceee-----------ecccCCCeEEEEecCCCeEEEEEecccceEEEe---------------CcEee-CCCCC
Q 008510 133 DLPG-LEALQ-----------IPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKL---------------GEVVD-GPDDG 184 (563)
Q Consensus 133 d~~~-~~~l~-----------~~g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~---------------g~v~~-~~~~~ 184 (563)
|+.. ...+. ...+++|...+..+.+ +.+++||...+..... +..+. +...+
T Consensus 203 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 281 (369)
T 3zwl_B 203 DVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRD-TNSFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIILGGGQE 281 (369)
T ss_dssp ETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETT-SEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECCC
T ss_pred ECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCC-ceEEEEECCCCceeeeecCCCCceeEEecCCCceEEEeecCC
Confidence 9986 33221 2245566666555554 5667888766543221 11100 00000
Q ss_pred ------------------------CCceeecCcccCcEEEEEc-CCCCeeeeecCCCCCChhHHHHHHH
Q 008510 185 ------------------------MNRPILDGIQYDYVFDVDI-GDGEPTRKLPYNRSDNPYDAADKWL 228 (563)
Q Consensus 185 ------------------------~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~~~~~w~~a~~f~ 228 (563)
.....+.+|. +.|.++.+ ++|+.++++..|+.+++|++...++
T Consensus 282 ~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~ 349 (369)
T 3zwl_B 282 AKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHF-GPLNTVAISPQGTSYASGGEDGFIRLHHFEKSYF 349 (369)
T ss_dssp -------------CEEEEEETTTCCEEEEEECCS-SCEEEEEECTTSSEEEEEETTSEEEEEEECHHHH
T ss_pred CceEEEEecCCCcceeEEEecCCCcchhheeccc-CcEEEEEECCCCCEEEEEcCCCeEEEEECccccc
Confidence 0112344554 67899999 8999999999999999999987654
No 44
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.81 E-value=2.5e-18 Score=180.18 Aligned_cols=206 Identities=13% Similarity=0.184 Sum_probs=156.9
Q ss_pred CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCCeEEEEeCCCcEEEEc---CCceeEEEe-cCCcEEEE
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWK---DGVCVQSIE-HPGCVWDA 76 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g~l~s~s~D~tvriWd---~~~~~~~l~-h~~~V~~v 76 (563)
+|++|++|+.||+|++||+ +++++.++.+|...|.++++++. .+++|+.|+++++|+ ....+.++. |...+.++
T Consensus 158 dg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~~-~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~ 236 (420)
T 4gga_A 158 EGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSY-ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGL 236 (420)
T ss_dssp TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETT-EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEE
T ss_pred CCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeCCC-EEEEEeCCCceeEeeecccceeeEEecccccceeee
Confidence 5899999999999999999 89999999999999999988644 899999999999999 455667777 88999999
Q ss_pred EEccCCc-EEEEeCCCcEEEEEcCCCceec--eeeeccccccccee---------EE--eeccCCceEEEeCCCCceeee
Q 008510 77 KFLENGD-IVTACSDGVTRIWTVHSDKVAD--SLELEAYASELSQY---------KL--CRKKVGGLKLEDLPGLEALQI 142 (563)
Q Consensus 77 ~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~--~~~~~~~~~~v~~~---------~~--~~~~~~~i~~~d~~~~~~l~~ 142 (563)
.++|+|. +++++.|+.|++|+..+++... ......+...+... .. .+..|+.|++||+.++..+..
T Consensus 237 ~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~ 316 (420)
T 4gga_A 237 RWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSA 316 (420)
T ss_dssp EECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEE
T ss_pred eecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcccccee
Confidence 9999999 9999999999999998775321 11222333332221 11 345789999999987765443
Q ss_pred c----------ccCCCeEEEEecC-CCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeee
Q 008510 143 P----------GTNAGQTKVVREG-DNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTR 210 (563)
Q Consensus 143 ~----------g~~dg~~~l~~~~-~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~ 210 (563)
. .++++...+..++ .++.+++||..++. ....+.||. +.|.++.+ +||..++
T Consensus 317 ~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~---------------~v~~l~gH~-~~V~~l~~spdg~~l~ 380 (420)
T 4gga_A 317 VDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMA---------------KVAELKGHT-SRVLSLTMSPDGATVA 380 (420)
T ss_dssp EECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCC---------------EEEEECCCS-SCEEEEEECTTSSCEE
T ss_pred eccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCc---------------EEEEEcCCC-CCEEEEEEcCCCCEEE
Confidence 3 3344444444432 34556777765542 223466776 78999999 9999999
Q ss_pred eecCCCCCChhHHH
Q 008510 211 KLPYNRSDNPYDAA 224 (563)
Q Consensus 211 ~~~~n~~~~~w~~a 224 (563)
+++.|+++++|++.
T Consensus 381 S~s~D~tvriWdv~ 394 (420)
T 4gga_A 381 SAAADETLRLWRCF 394 (420)
T ss_dssp EEETTTEEEEECCS
T ss_pred EEecCCeEEEEECC
Confidence 99999999999974
No 45
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.81 E-value=3.6e-18 Score=171.71 Aligned_cols=221 Identities=15% Similarity=0.133 Sum_probs=151.0
Q ss_pred CCCEEEEEECCCcEEEEcC-CC----ceeEEEecCCCcEEEEEEcC--CC-eEEEEeCCCcEEEEc--CC---------c
Q 008510 2 PGVGIISASHDCTIRLWAL-TG----QVLMEMVGHTAIVYSIDSHA--SG-LIVSGSEDRFAKIWK--DG---------V 62 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g----~~i~~l~gH~~~V~~v~~~p--~g-~l~s~s~D~tvriWd--~~---------~ 62 (563)
+|++|++|+.||+|++||+ ++ +++..+.+|...|.+++|+| ++ .+++|+.|++|++|| .+ +
T Consensus 22 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~ 101 (351)
T 3f3f_A 22 YGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWN 101 (351)
T ss_dssp SSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEE
T ss_pred CCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcc
Confidence 5789999999999999999 44 47788899999999999999 47 999999999999999 33 4
Q ss_pred eeEEEe-cCCcEEEEEEccC--Cc-EEEEeCCCcEEEEEcCCCceeceeeec-----------cccccc-----------
Q 008510 63 CVQSIE-HPGCVWDAKFLEN--GD-IVTACSDGVTRIWTVHSDKVADSLELE-----------AYASEL----------- 116 (563)
Q Consensus 63 ~~~~l~-h~~~V~~v~~~p~--g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~-----------~~~~~v----------- 116 (563)
++..+. |...|++++|+|+ +. +++|+.||.|++||+++++........ .+...+
T Consensus 102 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 181 (351)
T 3f3f_A 102 KLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFS 181 (351)
T ss_dssp EEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSS
T ss_pred eeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCC
Confidence 466666 8889999999998 88 999999999999999887643322110 011111
Q ss_pred ceeEEeeccCCceEEEeCCCCce-------------eeecccCCC----eEEEEecCCCeEEEEEecccceEEEeC----
Q 008510 117 SQYKLCRKKVGGLKLEDLPGLEA-------------LQIPGTNAG----QTKVVREGDNGVAYSWDMKEQKWDKLG---- 175 (563)
Q Consensus 117 ~~~~~~~~~~~~i~~~d~~~~~~-------------l~~~g~~dg----~~~l~~~~~~~~~~~wd~~~~~w~~~g---- 175 (563)
....+.+..++.+.+|+...... .....+++| .+.+..+.| +.+++||...+......
T Consensus 182 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~ 260 (351)
T 3f3f_A 182 PEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKD-GRIRIFKITEKLSPLASEESL 260 (351)
T ss_dssp CCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETT-SCEEEEEEEECC---------
T ss_pred CcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCC-CeEEEEeCCCCcCccccCCcc
Confidence 34455566667776666554432 122244555 344443333 55667876543211000
Q ss_pred ------------cEeeCC-------------C--CCCCceeecCcccCcEEEEEc-CCCCeeeeecCCCCCChhHHH
Q 008510 176 ------------EVVDGP-------------D--DGMNRPILDGIQYDYVFDVDI-GDGEPTRKLPYNRSDNPYDAA 224 (563)
Q Consensus 176 ------------~v~~~~-------------~--~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~~~~~w~~a 224 (563)
...... . .......+.+|. +.|.++.+ ++|..+++++.|+.+++|++.
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~ 336 (351)
T 3f3f_A 261 TNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHN-GEVWSVSWNLTGTILSSAGDDGKVRLWKAT 336 (351)
T ss_dssp ------------------------------CCSEEEEEEEEECTTS-SCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred cceeccCCCcccccccccccccccceeeeecccccccEEEEEeccc-ccEEEEEEcCCCCEEEEecCCCcEEEEecC
Confidence 000000 0 000123356665 77999999 899999999999999999975
No 46
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=99.81 E-value=2.6e-18 Score=187.01 Aligned_cols=201 Identities=25% Similarity=0.415 Sum_probs=156.0
Q ss_pred CCCEEEEEECCCcEEEEcCCCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc-CCceeEEEe-cCCcEEEEEE
Q 008510 2 PGVGIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-DGVCVQSIE-HPGCVWDAKF 78 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd-~~~~~~~l~-h~~~V~~v~~ 78 (563)
+|+.+++++.|++|++|+.+++.+..+.+|...|.+++|+|+| .+++++.|++|++|+ +++++.++. |...|.+++|
T Consensus 314 ~~~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~~~~~~~~~~~~v~~~~~ 393 (577)
T 2ymu_A 314 DGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAF 393 (577)
T ss_dssp TSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTCCEEEEEECCSSCEEEEEE
T ss_pred CCCEEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCCCEEEEecCCCCCeEEEEE
Confidence 5789999999999999999888889999999999999999999 999999999999999 889998888 8889999999
Q ss_pred ccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccccc--------eeEEeeccCCceEEEeCCCCceeeecc-----
Q 008510 79 LENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELS--------QYKLCRKKVGGLKLEDLPGLEALQIPG----- 144 (563)
Q Consensus 79 ~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~--------~~~~~~~~~~~i~~~d~~~~~~l~~~g----- 144 (563)
+|+|+ +++++.|+.|++||..... . ..+..+...+. ...+++..++.+++||..+.......+
T Consensus 394 s~dg~~l~~~~~d~~v~~~~~~~~~-~--~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v 470 (577)
T 2ymu_A 394 SPDGQTIASASDDKTVKLWNRNGQL-L--QTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSV 470 (577)
T ss_dssp CTTSSCEEEEETTSEEEEECTTCCE-E--EEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCEEEEEECCSSCE
T ss_pred CCCCCEEEEEeCCCEEEEEeCCCCE-E--EEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCCCEEEEEcCCCCCE
Confidence 99999 9999999999999965432 2 12333333332 345567788999999986543333334
Q ss_pred -----cCCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeeeecCCCCC
Q 008510 145 -----TNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRKLPYNRSD 218 (563)
Q Consensus 145 -----~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~~~ 218 (563)
+++|.+.+..+.+ +.+.+|+.. +.. .+.+.||. +.|.++.+ +||+.+++...|+.+
T Consensus 471 ~~~~~spd~~~las~~~d-~~i~iw~~~-------~~~---------~~~~~~h~-~~v~~l~~s~dg~~l~s~~~dg~v 532 (577)
T 2ymu_A 471 RGVAFSPDGQTIASASDD-KTVKLWNRN-------GQL---------LQTLTGHS-SSVRGVAFSPDGQTIASASDDKTV 532 (577)
T ss_dssp EEEEECTTSCEEEEEETT-SEEEEEETT-------SCE---------EEEEECCS-SCEEEEEECTTSSCEEEEETTSEE
T ss_pred EEEEEcCCCCEEEEEeCC-CEEEEEcCC-------CCE---------EEEEeCCC-CCEEEEEEcCCCCEEEEEECcCEE
Confidence 4455544444333 445566632 111 22356665 67999999 999999999999999
Q ss_pred ChhHH
Q 008510 219 NPYDA 223 (563)
Q Consensus 219 ~~w~~ 223 (563)
++|+.
T Consensus 533 ~lwd~ 537 (577)
T 2ymu_A 533 KLWNR 537 (577)
T ss_dssp EEECT
T ss_pred EEEeC
Confidence 99985
No 47
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.81 E-value=2.5e-18 Score=182.06 Aligned_cols=206 Identities=21% Similarity=0.336 Sum_probs=156.4
Q ss_pred CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCCeEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEEEE
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDAK 77 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~v~ 77 (563)
+++++++|+.||+|++||+ +++++.++.+|.+.|.+++|+|++.+++|+.|++|++|| +++++..+. |...|.+++
T Consensus 131 ~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~ 210 (464)
T 3v7d_B 131 EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLD 210 (464)
T ss_dssp ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEE
T ss_pred CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCCEEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEE
Confidence 4789999999999999999 899999999999999999999988999999999999999 788888888 999999999
Q ss_pred Ecc--CCc-EEEEeCCCcEEEEEcCCCceece---------------------eeeccccccc------ceeEEeeccCC
Q 008510 78 FLE--NGD-IVTACSDGVTRIWTVHSDKVADS---------------------LELEAYASEL------SQYKLCRKKVG 127 (563)
Q Consensus 78 ~~p--~g~-i~sgs~Dg~Irvwd~~~~~~~~~---------------------~~~~~~~~~v------~~~~~~~~~~~ 127 (563)
|++ ++. +++|+.||.|++||++++..... ..+..+...+ ....+++..++
T Consensus 211 ~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~ 290 (464)
T 3v7d_B 211 IVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDN 290 (464)
T ss_dssp EEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEETTS
T ss_pred EecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeCCC
Confidence 995 666 99999999999999988753221 1122222222 24566778899
Q ss_pred ceEEEeCCCCceeeec-ccC----------CCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccC
Q 008510 128 GLKLEDLPGLEALQIP-GTN----------AGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYD 196 (563)
Q Consensus 128 ~i~~~d~~~~~~l~~~-g~~----------dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d 196 (563)
.|++||+...+.+... ++. +|...+..+.+ +.+++||..++.. ...+.+|. .
T Consensus 291 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d-g~i~vwd~~~~~~---------------~~~~~~h~-~ 353 (464)
T 3v7d_B 291 TLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMD-TTIRIWDLENGEL---------------MYTLQGHT-A 353 (464)
T ss_dssp CEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETT-SCEEEEETTTTEE---------------EEEECCCS-S
T ss_pred eEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCC-CcEEEEECCCCcE---------------EEEEeCCC-C
Confidence 9999999877655433 444 34443433333 4456777655432 12345554 6
Q ss_pred cEEEEEcCCCCeeeeecCCCCCChhHHHH
Q 008510 197 YVFDVDIGDGEPTRKLPYNRSDNPYDAAD 225 (563)
Q Consensus 197 ~v~~vd~~dg~~~~~~~~n~~~~~w~~a~ 225 (563)
.|..+.+. +..++++..|+.+++|++.+
T Consensus 354 ~v~~~~~~-~~~l~s~s~dg~v~vwd~~~ 381 (464)
T 3v7d_B 354 LVGLLRLS-DKFLVSAAADGSIRGWDAND 381 (464)
T ss_dssp CEEEEEEC-SSEEEEEETTSEEEEEETTT
T ss_pred cEEEEEEc-CCEEEEEeCCCcEEEEECCC
Confidence 68888884 57799999999999999753
No 48
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.80 E-value=1.5e-18 Score=180.45 Aligned_cols=198 Identities=17% Similarity=0.108 Sum_probs=134.0
Q ss_pred CCEEEEEECCCcEEEEcC-CCce-----eEEEecCCCcEEEEEEcC--------CC-eEEEEeCCCcEEEEc--CCceeE
Q 008510 3 GVGIISASHDCTIRLWAL-TGQV-----LMEMVGHTAIVYSIDSHA--------SG-LIVSGSEDRFAKIWK--DGVCVQ 65 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~-~g~~-----i~~l~gH~~~V~~v~~~p--------~g-~l~s~s~D~tvriWd--~~~~~~ 65 (563)
+.++++|+.|++||+||. .+++ +..+.||++.|++|+|+| +| .|+|||.|++||||| ++.++.
T Consensus 101 ~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~ 180 (393)
T 4gq1_A 101 SLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPIL 180 (393)
T ss_dssp EEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEE
T ss_pred CCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceee
Confidence 457999999999999999 5544 334679999999999998 67 899999999999999 555554
Q ss_pred EE-ecCCcEEEEEEccCCc--EEEEeCCCcEEEEEcCCCceeceee-----------------------eccccccc---
Q 008510 66 SI-EHPGCVWDAKFLENGD--IVTACSDGVTRIWTVHSDKVADSLE-----------------------LEAYASEL--- 116 (563)
Q Consensus 66 ~l-~h~~~V~~v~~~p~g~--i~sgs~Dg~Irvwd~~~~~~~~~~~-----------------------~~~~~~~v--- 116 (563)
.+ .|...|.+|+|+|++. +++|+.|++|++||+++++...... ...+...+
T Consensus 181 ~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v 260 (393)
T 4gq1_A 181 AGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANV 260 (393)
T ss_dssp EEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEE
T ss_pred eecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceee
Confidence 44 4889999999999874 8999999999999998876321110 01111111
Q ss_pred ------ceeEEeeccCCceEEEeCCCCceeeec------------------------------ccCCCeEEEEecCCCeE
Q 008510 117 ------SQYKLCRKKVGGLKLEDLPGLEALQIP------------------------------GTNAGQTKVVREGDNGV 160 (563)
Q Consensus 117 ------~~~~~~~~~~~~i~~~d~~~~~~l~~~------------------------------g~~dg~~~l~~~~~~~~ 160 (563)
....++...++.+++||+......... ..+.+...++...+++.
T Consensus 261 ~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~ 340 (393)
T 4gq1_A 261 RWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGL 340 (393)
T ss_dssp EEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTE
T ss_pred eeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCE
Confidence 234556778899999998644221110 01112234444555577
Q ss_pred EEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeeeecCCC
Q 008510 161 AYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRKLPYNR 216 (563)
Q Consensus 161 ~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~ 216 (563)
+++||...+.. .....++. ..|.++.| +||+.++....++
T Consensus 341 V~lwd~~~~~~---------------~~~~~~~~-~~V~svafspdG~~LA~as~~G 381 (393)
T 4gq1_A 341 IQLINTYEKDS---------------NSIPIQLG-MPIVDFCWHQDGSHLAIATEGS 381 (393)
T ss_dssp EEEEETTCTTC---------------CEEEEECS-SCEEEEEECTTSSEEEEEESSE
T ss_pred EEEEECCCCcE---------------EEEecCCC-CcEEEEEEcCCCCEEEEEeCCC
Confidence 78888765421 11223333 56999999 9999888876554
No 49
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.80 E-value=4.3e-18 Score=190.29 Aligned_cols=204 Identities=21% Similarity=0.233 Sum_probs=147.8
Q ss_pred CCEEEEEECCCcEEEEcC-C-----CceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCc
Q 008510 3 GVGIISASHDCTIRLWAL-T-----GQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGC 72 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~-~-----g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~ 72 (563)
+++|+|||.|++|++|++ + +.+.+.+.+|...|.+++|+|+| .++|||.|++|+||| ++.+++.+. |...
T Consensus 395 ~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~ 474 (694)
T 3dm0_A 395 ADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKD 474 (694)
T ss_dssp CSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSC
T ss_pred CCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCC
Confidence 478999999999999998 3 34567899999999999999999 999999999999999 778888887 9999
Q ss_pred EEEEEEccCCc-EEEEeCCCcEEEEEcCCCceecee-eeccccccc----------ceeEEeeccCCceEEEeCCCCcee
Q 008510 73 VWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSL-ELEAYASEL----------SQYKLCRKKVGGLKLEDLPGLEAL 140 (563)
Q Consensus 73 V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~-~~~~~~~~v----------~~~~~~~~~~~~i~~~d~~~~~~l 140 (563)
|++++|+|+|+ +++|+.|++|++||.......... ....|...+ ....+++..++.|++||++.....
T Consensus 475 v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~ 554 (694)
T 3dm0_A 475 VLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLR 554 (694)
T ss_dssp EEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEE
T ss_pred EEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEE
Confidence 99999999998 999999999999998765422111 111222222 235667888999999999876544
Q ss_pred eec-----------ccCCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCe
Q 008510 141 QIP-----------GTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEP 208 (563)
Q Consensus 141 ~~~-----------g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~ 208 (563)
... .+++|...+..+.| +.+.+||..++... . .+.. ...|.++.+ +++.
T Consensus 555 ~~~~~h~~~v~~v~~spdg~~l~sg~~D-g~i~iwd~~~~~~~------~---------~~~~--~~~v~~~~~sp~~~- 615 (694)
T 3dm0_A 555 STLAGHTGYVSTVAVSPDGSLCASGGKD-GVVLLWDLAEGKKL------Y---------SLEA--NSVIHALCFSPNRY- 615 (694)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETT-SBCEEEETTTTEEE------E---------CCBC--SSCEEEEEECSSSS-
T ss_pred EEEcCCCCCEEEEEEeCCCCEEEEEeCC-CeEEEEECCCCceE------E---------EecC--CCcEEEEEEcCCCc-
Confidence 322 34455544444443 44566776554321 1 0111 245788888 6665
Q ss_pred eeeecCCCCCChhHHHH
Q 008510 209 TRKLPYNRSDNPYDAAD 225 (563)
Q Consensus 209 ~~~~~~n~~~~~w~~a~ 225 (563)
.+....+.++++|++..
T Consensus 616 ~l~~~~~~~i~iwd~~~ 632 (694)
T 3dm0_A 616 WLCAATEHGIKIWDLES 632 (694)
T ss_dssp EEEEEETTEEEEEETTT
T ss_pred EEEEEcCCCEEEEECCC
Confidence 45555677789998754
No 50
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.80 E-value=5.1e-19 Score=186.47 Aligned_cols=209 Identities=14% Similarity=0.099 Sum_probs=144.3
Q ss_pred CCCEEEEEECCCcEEEEcCCCceeEEEecC---CCcEEEEEEcCCC-eEEEEeCCCcEEEEc-CCceeEEEe-cCCcEEE
Q 008510 2 PGVGIISASHDCTIRLWALTGQVLMEMVGH---TAIVYSIDSHASG-LIVSGSEDRFAKIWK-DGVCVQSIE-HPGCVWD 75 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~~g~~i~~l~gH---~~~V~~v~~~p~g-~l~s~s~D~tvriWd-~~~~~~~l~-h~~~V~~ 75 (563)
++++|+|||.||+|++||+.+.....+..| ...+.+++|+|++ .+++|+.||+|++|| .++++.++. |...|.+
T Consensus 176 ~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~h~~~v~~ 255 (435)
T 4e54_B 176 NTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTH 255 (435)
T ss_dssp CTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBCCCSBCCSSCEEE
T ss_pred CCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcceeEEEecccceEEe
Confidence 578999999999999999966665555433 3467899999999 999999999999999 888877777 9999999
Q ss_pred EEEccCCc--EEEEeCCCcEEEEEcCCCceecee-eeccccccc--------ceeEEeeccCCceEEEeCCCCceeeec-
Q 008510 76 AKFLENGD--IVTACSDGVTRIWTVHSDKVADSL-ELEAYASEL--------SQYKLCRKKVGGLKLEDLPGLEALQIP- 143 (563)
Q Consensus 76 v~~~p~g~--i~sgs~Dg~Irvwd~~~~~~~~~~-~~~~~~~~v--------~~~~~~~~~~~~i~~~d~~~~~~l~~~- 143 (563)
++|+|++. +++|+.|+.|++||+++.+..... ....|...+ ....+++..|+.|++||+.........
T Consensus 256 v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~ 335 (435)
T 4e54_B 256 VALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLI 335 (435)
T ss_dssp EEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEEC
T ss_pred eeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEe
Confidence 99999886 789999999999999887633221 112333322 245667888999999999765433211
Q ss_pred ----------------ccCCCeEEEE-----------ecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccC
Q 008510 144 ----------------GTNAGQTKVV-----------REGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYD 196 (563)
Q Consensus 144 ----------------g~~dg~~~l~-----------~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d 196 (563)
.++++...++ ...++..+++|+..++... . .++.+|. .
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~------~--------~l~~~~~-~ 400 (435)
T 4e54_B 336 PHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMM------C--------QLYDPES-S 400 (435)
T ss_dssp CCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEE------E--------EECCSSC-C
T ss_pred cccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEE------E--------EEeCCCC-C
Confidence 1222222222 2223334566665554321 1 1122333 5
Q ss_pred cEEEE-Ec-CCCCeeeeecCCCCCChhHHHHH
Q 008510 197 YVFDV-DI-GDGEPTRKLPYNRSDNPYDAADK 226 (563)
Q Consensus 197 ~v~~v-d~-~dg~~~~~~~~n~~~~~w~~a~~ 226 (563)
.|.++ .| ++|..++++. |.++++|+..+.
T Consensus 401 ~v~s~~~fspdg~~lasg~-d~~i~iW~~~~g 431 (435)
T 4e54_B 401 GISSLNEFNPMGDTLASAM-GYHILIWSQQEA 431 (435)
T ss_dssp CCCCEEEECTTSSCEEEEC-SSEEEECCCC--
T ss_pred cEEEEEEECCCCCEEEEEc-CCcEEEEECCcC
Confidence 56666 56 8998777765 778999987543
No 51
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.79 E-value=1.2e-17 Score=167.70 Aligned_cols=204 Identities=13% Similarity=0.232 Sum_probs=154.7
Q ss_pred CCCEEEEEECCCcEEEEcC-CCc--eeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEE
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQ--VLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVW 74 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~--~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~ 74 (563)
+|+++++|+.||+|++||+ +++ ....+.+|...|.+++|+|++ .+++++.|+.|++|| +++.+..+. |...|.
T Consensus 108 ~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~ 187 (337)
T 1gxr_A 108 DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGAS 187 (337)
T ss_dssp TSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred CCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceE
Confidence 4789999999999999999 555 677889999999999999999 899999999999999 777888887 888999
Q ss_pred EEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeecc----ccc-ccceeEEeeccCCceEEEeCCCCceeeecc----
Q 008510 75 DAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEA----YAS-ELSQYKLCRKKVGGLKLEDLPGLEALQIPG---- 144 (563)
Q Consensus 75 ~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~----~~~-~v~~~~~~~~~~~~i~~~d~~~~~~l~~~g---- 144 (563)
+++|+|+|. +++++.||.|++||+++++......... ..- .-....+.+..++.+.+||+.+.+.....+
T Consensus 188 ~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 267 (337)
T 1gxr_A 188 CIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESC 267 (337)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSC
T ss_pred EEEECCCCCEEEEEecCCcEEEEECCCCceEeeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEEcCCccc
Confidence 999999998 9999999999999999987543322111 000 112445566778999999998776544433
Q ss_pred ------cCCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeeeecCCCC
Q 008510 145 ------TNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRKLPYNRS 217 (563)
Q Consensus 145 ------~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~~ 217 (563)
+++|...+..+.+ +.+++|+...+... +...+.+.+.++.+ ++|..++....|+.
T Consensus 268 v~~~~~~~~~~~l~~~~~d-g~i~~~~~~~~~~~-----------------~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 329 (337)
T 1gxr_A 268 VLSLKFAYCGKWFVSTGKD-NLLNAWRTPYGASI-----------------FQSKESSSVLSCDISVDDKYIVTGSGDKK 329 (337)
T ss_dssp EEEEEECTTSSEEEEEETT-SEEEEEETTTCCEE-----------------EEEECSSCEEEEEECTTSCEEEEEETTSC
T ss_pred eeEEEECCCCCEEEEecCC-CcEEEEECCCCeEE-----------------EEecCCCcEEEEEECCCCCEEEEecCCCe
Confidence 4455544444443 45567776554321 11112356899999 89999999999999
Q ss_pred CChhHH
Q 008510 218 DNPYDA 223 (563)
Q Consensus 218 ~~~w~~ 223 (563)
+.+|++
T Consensus 330 i~iw~~ 335 (337)
T 1gxr_A 330 ATVYEV 335 (337)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999975
No 52
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.79 E-value=4.9e-19 Score=181.97 Aligned_cols=209 Identities=10% Similarity=-0.045 Sum_probs=142.6
Q ss_pred CCCEEEEEECCCcEEEEcC-CC--ceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCc---eeEEEe-cCC
Q 008510 2 PGVGIISASHDCTIRLWAL-TG--QVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGV---CVQSIE-HPG 71 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g--~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~---~~~~l~-h~~ 71 (563)
+|++|++|+.|++|++||+ ++ +++.++.+|...|.+++|+|++ .+++|+.|++|++|| +++ +...+. |..
T Consensus 22 ~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~ 101 (377)
T 3dwl_C 22 QRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNR 101 (377)
T ss_dssp SSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSS
T ss_pred CCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCC
Confidence 5789999999999999999 66 7888999999999999999999 999999999999999 444 455554 888
Q ss_pred cEEEEEEccCCc-EEEEeCCCcEEEEEcCCCcee-ceeeecc-cccccc--------eeEEeeccCCceEEEeCCCC---
Q 008510 72 CVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVA-DSLELEA-YASELS--------QYKLCRKKVGGLKLEDLPGL--- 137 (563)
Q Consensus 72 ~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~-~~~~~~~-~~~~v~--------~~~~~~~~~~~i~~~d~~~~--- 137 (563)
.|++++|+|+|+ +++|+.|+.|++||+++++.. ....+.. +...+. ...+++..++.|++||+...
T Consensus 102 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 181 (377)
T 3dwl_C 102 AATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVD 181 (377)
T ss_dssp CEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC
T ss_pred ceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccC
Confidence 999999999998 999999999999999987521 1122222 333332 35567778899999998421
Q ss_pred ---------------c----------eeeecccCCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecC
Q 008510 138 ---------------E----------ALQIPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDG 192 (563)
Q Consensus 138 ---------------~----------~l~~~g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g 192 (563)
. +.....+++|.+.+..+.+ +.+++||...+.... .....+.+
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-~~i~iwd~~~~~~~~-----------~~~~~~~~ 249 (377)
T 3dwl_C 182 AKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHD-SSVTIAYPSAPEQPP-----------RALITVKL 249 (377)
T ss_dssp -CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETT-TEEC-CEECSTTSCE-----------EECCCEEC
T ss_pred CCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCC-CcEEEEECCCCCCcc-----------eeeEeecC
Confidence 1 1222345566555555444 445667654432100 00223555
Q ss_pred cccCcEEEEEc-CCCCeeeeecCCCCCChhHHH
Q 008510 193 IQYDYVFDVDI-GDGEPTRKLPYNRSDNPYDAA 224 (563)
Q Consensus 193 ~~~d~v~~vd~-~dg~~~~~~~~n~~~~~w~~a 224 (563)
|. +.|.++.+ ++|+.++.+..+... .|...
T Consensus 250 ~~-~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 250 SQ-LPLRSLLWANESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp SS-SCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred CC-CceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence 55 67899999 899877777655444 66543
No 53
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.79 E-value=1e-17 Score=168.88 Aligned_cols=219 Identities=18% Similarity=0.168 Sum_probs=153.7
Q ss_pred CCEEEEEECCCcEEEEcC-CC-----ceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCc
Q 008510 3 GVGIISASHDCTIRLWAL-TG-----QVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGC 72 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~-~g-----~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~ 72 (563)
+++|+|||.|++||+||+ ++ .+.+++.+|...|.+++|+|+| .+++|+.|+.|++|+ ......... +...
T Consensus 51 ~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~ 130 (340)
T 4aow_A 51 PDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKD 130 (340)
T ss_dssp TTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSC
T ss_pred CCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCc
Confidence 579999999999999998 32 3678899999999999999999 999999999999999 445555554 6678
Q ss_pred EEEEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccc----------cceeEEeeccCCceEEEeCCCCceee
Q 008510 73 VWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASE----------LSQYKLCRKKVGGLKLEDLPGLEALQ 141 (563)
Q Consensus 73 V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~----------v~~~~~~~~~~~~i~~~d~~~~~~l~ 141 (563)
+..+.+++++. +++|+.|+.+++||........ .....+... .....+++..++.|++||+.......
T Consensus 131 ~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~ 209 (340)
T 4aow_A 131 VLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYT-VQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKT 209 (340)
T ss_dssp EEEEEECTTSSCEEEEETTSCEEEECTTSCEEEE-ECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEE
T ss_pred eeEEEEeecCccceeecCCCeEEEEEeCCCceEE-EEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceee
Confidence 99999999988 9999999999999988765321 112222221 22345567788899999987664432
Q ss_pred e-----------cccCCCeEEEEecCCCeEEEEEecccceEEEe---------------CcEeeCCCCCC--------C-
Q 008510 142 I-----------PGTNAGQTKVVREGDNGVAYSWDMKEQKWDKL---------------GEVVDGPDDGM--------N- 186 (563)
Q Consensus 142 ~-----------~g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~---------------g~v~~~~~~~~--------~- 186 (563)
. ..+++|.+.+..+.| +.+.+||......... +.++....++. .
T Consensus 210 ~~~~h~~~v~~~~~s~~~~~l~s~s~D-g~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~ 288 (340)
T 4aow_A 210 NHIGHTGYLNTVTVSPDGSLCASGGKD-GQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKI 288 (340)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETT-CEEEEEETTTTEEEEEEECSSCEEEEEECSSSSEEEEEETTEEEEEETTTTE
T ss_pred EecCCCCcEEEEEECCCCCEEEEEeCC-CeEEEEEeccCceeeeecCCceEEeeecCCCCceeeccCCCEEEEEECCCCe
Confidence 2 245666665555554 5667888765542211 11111111100 0
Q ss_pred ----------ceeecCcccCcEEEEEc-CCCCeeeeecCCCCCChhHHH
Q 008510 187 ----------RPILDGIQYDYVFDVDI-GDGEPTRKLPYNRSDNPYDAA 224 (563)
Q Consensus 187 ----------~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~~~~~w~~a 224 (563)
.....++ .+.|.++.+ +||+.+++++.|+.+++|+++
T Consensus 289 ~~~~~~~~~~~~~~~~h-~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~ 336 (340)
T 4aow_A 289 IVDELKQEVISTSSKAE-PPQCTSLAWSADGQTLFAGYTDNLVRVWQVT 336 (340)
T ss_dssp EEEEECCC-------CC-CCCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred EEEeccccceeeeccCC-CCCEEEEEECCCCCEEEEEeCCCEEEEEeCC
Confidence 0011233 367899999 999999999999999999975
No 54
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.79 E-value=1.3e-17 Score=173.62 Aligned_cols=208 Identities=12% Similarity=0.129 Sum_probs=159.7
Q ss_pred CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCCeEEEEeCCCcEEEEc---CCceeEEEe-cCCcEEEE
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWK---DGVCVQSIE-HPGCVWDA 76 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g~l~s~s~D~tvriWd---~~~~~~~l~-h~~~V~~v 76 (563)
+|++|++|+.||+|++||+ +++.+.++.+|...|.+++|+++ .+++|+.|++|++|| ....+..+. |...|.++
T Consensus 145 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~ 223 (401)
T 4aez_A 145 DGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNRH-VLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGL 223 (401)
T ss_dssp TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEETT-EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEE
T ss_pred CCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEECCC-EEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEE
Confidence 5789999999999999999 88999999999999999999543 899999999999999 356667776 99999999
Q ss_pred EEccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccccc---------eeEEeec--cCCceEEEeCCCCceeeec-
Q 008510 77 KFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELS---------QYKLCRK--KVGGLKLEDLPGLEALQIP- 143 (563)
Q Consensus 77 ~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~---------~~~~~~~--~~~~i~~~d~~~~~~l~~~- 143 (563)
+|+|+|. +++|+.||.|++||+++++... .+..+...+. ....++. .++.|++||+.....+...
T Consensus 224 ~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~--~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~ 301 (401)
T 4aez_A 224 AWRSDGLQLASGGNDNVVQIWDARSSIPKF--TKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD 301 (401)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTCSSEEE--EECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE
T ss_pred EEcCCCCEEEEEeCCCeEEEccCCCCCccE--EecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe
Confidence 9999998 9999999999999999876432 2233333332 2333332 6899999999876554332
Q ss_pred ---------ccCCCeEEEEecC-CCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeeee
Q 008510 144 ---------GTNAGQTKVVREG-DNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRKL 212 (563)
Q Consensus 144 ---------g~~dg~~~l~~~~-~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~ 212 (563)
.+++|...+..++ .++.+++|+...+.+..... +.+|. +.|.++.+ ++|..+++.
T Consensus 302 ~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~-------------~~~h~-~~v~~~~~s~dg~~l~s~ 367 (401)
T 4aez_A 302 AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVD-------------IPAHD-TRVLYSALSPDGRILSTA 367 (401)
T ss_dssp CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEE-------------EECCS-SCCCEEEECTTSSEEEEE
T ss_pred CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEE-------------ecCCC-CCEEEEEECCCCCEEEEE
Confidence 4566766666432 45677788876655443322 33443 56889999 899999999
Q ss_pred cCCCCCChhHHHHH
Q 008510 213 PYNRSDNPYDAADK 226 (563)
Q Consensus 213 ~~n~~~~~w~~a~~ 226 (563)
..|+.+.+|++...
T Consensus 368 ~~dg~i~iw~~~~~ 381 (401)
T 4aez_A 368 ASDENLKFWRVYDG 381 (401)
T ss_dssp CTTSEEEEEECCC-
T ss_pred eCCCcEEEEECCCC
Confidence 99999999998543
No 55
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.79 E-value=3.3e-18 Score=177.99 Aligned_cols=205 Identities=17% Similarity=0.263 Sum_probs=145.6
Q ss_pred CCCEEEEEECCCcEEEEcC-CC-------ceeEEEecCCCcEEEEEEcCCC--eEEEEeCCCcEEEEc--CCceeEEE--
Q 008510 2 PGVGIISASHDCTIRLWAL-TG-------QVLMEMVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK--DGVCVQSI-- 67 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g-------~~i~~l~gH~~~V~~v~~~p~g--~l~s~s~D~tvriWd--~~~~~~~l-- 67 (563)
++++|++|+.||+|++|++ ++ +++..+.+|...|.+++|+|++ .+++|+.|++|++|| +++++..+
T Consensus 93 ~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 172 (402)
T 2aq5_A 93 NDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGP 172 (402)
T ss_dssp CTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECT
T ss_pred CCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEec
Confidence 5789999999999999999 55 6788999999999999999996 799999999999999 78888888
Q ss_pred e-cCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccc-c--------ceeEEee---ccCCceEEEe
Q 008510 68 E-HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASE-L--------SQYKLCR---KKVGGLKLED 133 (563)
Q Consensus 68 ~-h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~-v--------~~~~~~~---~~~~~i~~~d 133 (563)
. |...|.+++|+|+|. +++|+.||.|++||+++++...... ..+... + .....++ ..++.|++||
T Consensus 173 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd 251 (402)
T 2aq5_A 173 DVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKD-RPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWD 251 (402)
T ss_dssp TTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEE-CSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEE
T ss_pred CCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeec-cCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEc
Confidence 5 888999999999998 9999999999999999987543321 222221 1 2334444 5789999999
Q ss_pred CCCCce-e--e----------ecccCCCeEEEEecCCCeEEEEEecccce--EEEeCcEeeCCCCCCCceeecCcccCcE
Q 008510 134 LPGLEA-L--Q----------IPGTNAGQTKVVREGDNGVAYSWDMKEQK--WDKLGEVVDGPDDGMNRPILDGIQYDYV 198 (563)
Q Consensus 134 ~~~~~~-l--~----------~~g~~dg~~~l~~~~~~~~~~~wd~~~~~--w~~~g~v~~~~~~~~~~~~~~g~~~d~v 198 (563)
+..... + . ...+++|...++.+..++.+++|+...+. ...+ ..+. ..+.|
T Consensus 252 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l-------------~~~~--~~~~v 316 (402)
T 2aq5_A 252 TKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYL-------------SMFS--SKESQ 316 (402)
T ss_dssp TTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEE-------------EEEC--CSSCC
T ss_pred CccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEee-------------cccc--cCCcc
Confidence 976543 1 1 11345565555444434556677765432 1111 0111 12456
Q ss_pred EEEEc-CCCCeeeeecCCCCCChhHHH
Q 008510 199 FDVDI-GDGEPTRKLPYNRSDNPYDAA 224 (563)
Q Consensus 199 ~~vd~-~dg~~~~~~~~n~~~~~w~~a 224 (563)
.++.+ ++|..++. .+..+++|++.
T Consensus 317 ~~~~~sp~~~~~~s--~~~~~~~~~l~ 341 (402)
T 2aq5_A 317 RGMGYMPKRGLEVN--KCEIARFYKLH 341 (402)
T ss_dssp SEEEECCGGGSCGG--GTEEEEEEEEE
T ss_pred cceEEeccccccee--cceeEEEEEcC
Confidence 77777 66654432 44466677664
No 56
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.79 E-value=1.7e-17 Score=169.53 Aligned_cols=206 Identities=11% Similarity=0.014 Sum_probs=150.8
Q ss_pred CCCEEEEEECCCcEEEEcC-CCc--eeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe---cCCc
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQ--VLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE---HPGC 72 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~--~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~---h~~~ 72 (563)
+|++|++|+.|++|++||+ +++ ++.++.+|...|.+++|+|++ .+++++.|++|++|| +++....+. |...
T Consensus 19 ~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 98 (372)
T 1k8k_C 19 DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRA 98 (372)
T ss_dssp TSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSC
T ss_pred CCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCc
Confidence 5789999999999999999 666 889999999999999999999 999999999999999 665554443 8889
Q ss_pred EEEEEEccCCc-EEEEeCCCcEEEEEcCCCcee--ceeeeccccccc--------ceeEEeeccCCceEEEeCC------
Q 008510 73 VWDAKFLENGD-IVTACSDGVTRIWTVHSDKVA--DSLELEAYASEL--------SQYKLCRKKVGGLKLEDLP------ 135 (563)
Q Consensus 73 V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~--~~~~~~~~~~~v--------~~~~~~~~~~~~i~~~d~~------ 135 (563)
|.+++|+|+|. +++|+.|+.|++||++.+... .......+...+ ....+++..++.+++||+.
T Consensus 99 v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~ 178 (372)
T 1k8k_C 99 ARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEE 178 (372)
T ss_dssp EEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSC
T ss_pred eeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccc
Confidence 99999999998 999999999999999887521 111112222222 2345667788999999953
Q ss_pred ------------CCceee-----------ecccCCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecC
Q 008510 136 ------------GLEALQ-----------IPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDG 192 (563)
Q Consensus 136 ------------~~~~l~-----------~~g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g 192 (563)
....+. ...+++|...+..+.+ +.+++||...+... ..+.+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~~i~i~d~~~~~~~---------------~~~~~ 242 (372)
T 1k8k_C 179 RPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHD-STVCLADADKKMAV---------------ATLAS 242 (372)
T ss_dssp CCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETT-TEEEEEEGGGTTEE---------------EEEEC
T ss_pred cccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCC-CEEEEEECCCCcee---------------EEEcc
Confidence 222222 2244556555554444 55677887654321 22334
Q ss_pred cccCcEEEEEc-CCCCeeeeecCCCCCChhHHHH
Q 008510 193 IQYDYVFDVDI-GDGEPTRKLPYNRSDNPYDAAD 225 (563)
Q Consensus 193 ~~~d~v~~vd~-~dg~~~~~~~~n~~~~~w~~a~ 225 (563)
+. ..|.++.+ ++|..++.. .|+.+.+|+...
T Consensus 243 ~~-~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 243 ET-LPLLAVTFITESSLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp SS-CCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred CC-CCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence 43 56888998 788866666 999999999865
No 57
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.78 E-value=2.4e-17 Score=164.49 Aligned_cols=206 Identities=12% Similarity=0.164 Sum_probs=153.7
Q ss_pred CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCCeEEEEeCCCcEEEEc---CCceeEEEe-cCCcEEEE
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWK---DGVCVQSIE-HPGCVWDA 76 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g~l~s~s~D~tvriWd---~~~~~~~l~-h~~~V~~v 76 (563)
+|+++++||.||+|++|++ +++++.++.+|...+.++.+.+. .+++++.|+.+++|+ ....+..+. |...+.++
T Consensus 78 ~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~-~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (318)
T 4ggc_A 78 EGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSY-ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGL 156 (318)
T ss_dssp TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETT-EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEE
T ss_pred CCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecCCC-EEEEEecCCceEeeecCCCceeEEEEcCccCceEEE
Confidence 5789999999999999999 89999999999999988776544 899999999999999 345556666 88899999
Q ss_pred EEccCCc-EEEEeCCCcEEEEEcCCCceece--eeecccccccc---------e--eEEeeccCCceEEEeCCCCceeee
Q 008510 77 KFLENGD-IVTACSDGVTRIWTVHSDKVADS--LELEAYASELS---------Q--YKLCRKKVGGLKLEDLPGLEALQI 142 (563)
Q Consensus 77 ~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~--~~~~~~~~~v~---------~--~~~~~~~~~~i~~~d~~~~~~l~~ 142 (563)
.+.++|. +++++.||.|++||+++++.... .....+...+. . ....+..++.|++||.........
T Consensus 157 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~ 236 (318)
T 4ggc_A 157 RWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSA 236 (318)
T ss_dssp EECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEE
T ss_pred EEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccc
Confidence 9999998 99999999999999988753211 11111222211 1 122456678999999987655433
Q ss_pred c----------ccCCCeEEEEec-CCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeee
Q 008510 143 P----------GTNAGQTKVVRE-GDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTR 210 (563)
Q Consensus 143 ~----------g~~dg~~~l~~~-~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~ 210 (563)
. .++++...+..+ ..++.+++||..++. ....+.||. +.|.++.+ +||..++
T Consensus 237 ~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~---------------~~~~l~gH~-~~V~~l~~spdg~~l~ 300 (318)
T 4ggc_A 237 VDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMA---------------KVAELKGHT-SRVLSLTMSPDGATVA 300 (318)
T ss_dssp EECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCC---------------EEEEECCCS-SCEEEEEECTTSSCEE
T ss_pred ccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCc---------------EEEEEcCCC-CCEEEEEEcCCCCEEE
Confidence 3 233444444433 234567778865542 123466776 78999999 9999999
Q ss_pred eecCCCCCChhHHH
Q 008510 211 KLPYNRSDNPYDAA 224 (563)
Q Consensus 211 ~~~~n~~~~~w~~a 224 (563)
+++.|+++++|++.
T Consensus 301 S~s~D~~v~iWd~~ 314 (318)
T 4ggc_A 301 SAAADETLRLWRCF 314 (318)
T ss_dssp EEETTTEEEEECCS
T ss_pred EEecCCeEEEEECC
Confidence 99999999999974
No 58
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.78 E-value=9.5e-18 Score=167.31 Aligned_cols=173 Identities=21% Similarity=0.290 Sum_probs=125.9
Q ss_pred CCEEEEEECCCcEEEEcC-CC--ceeEEEecCCCcEEEEEEcCC--C-eEEEEeCCCcEEEEc--CCc--eeEEEe-cCC
Q 008510 3 GVGIISASHDCTIRLWAL-TG--QVLMEMVGHTAIVYSIDSHAS--G-LIVSGSEDRFAKIWK--DGV--CVQSIE-HPG 71 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~-~g--~~i~~l~gH~~~V~~v~~~p~--g-~l~s~s~D~tvriWd--~~~--~~~~l~-h~~ 71 (563)
|++|+|||.|++|++||+ ++ .++.++.+|...|.+++|+|+ | .+++|+.|++|++|| .+. ....+. |..
T Consensus 67 g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~ 146 (297)
T 2pm7_B 67 GTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAI 146 (297)
T ss_dssp CSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSS
T ss_pred CCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccC
Confidence 789999999999999999 55 467788999999999999997 6 899999999999999 332 234455 888
Q ss_pred cEEEEEEccC-------------Cc-EEEEeCCCcEEEEEcCCCcee--ceeeecccccccc-----------eeEEeec
Q 008510 72 CVWDAKFLEN-------------GD-IVTACSDGVTRIWTVHSDKVA--DSLELEAYASELS-----------QYKLCRK 124 (563)
Q Consensus 72 ~V~~v~~~p~-------------g~-i~sgs~Dg~Irvwd~~~~~~~--~~~~~~~~~~~v~-----------~~~~~~~ 124 (563)
.|.+++|+|+ ++ |++|+.|++|++||+++++.. ....+..|...+. .+.+++.
T Consensus 147 ~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s 226 (297)
T 2pm7_B 147 GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVS 226 (297)
T ss_dssp CEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEE
T ss_pred ccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEE
Confidence 9999999996 45 999999999999999876521 2223444443322 4566778
Q ss_pred cCCceEEEeCCCCc------ee----------eecccCCCeEEEEecCCCeEEEEEecc-cceEEEeCc
Q 008510 125 KVGGLKLEDLPGLE------AL----------QIPGTNAGQTKVVREGDNGVAYSWDMK-EQKWDKLGE 176 (563)
Q Consensus 125 ~~~~i~~~d~~~~~------~l----------~~~g~~dg~~~l~~~~~~~~~~~wd~~-~~~w~~~g~ 176 (563)
.|+.|++||+.... .+ ....+++|...+..+.| +.+.+|+.. .+.|..+.+
T Consensus 227 ~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D-~~v~lw~~~~~g~w~~~~~ 294 (297)
T 2pm7_B 227 QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGD-NKVTLWKENLEGKWEPAGE 294 (297)
T ss_dssp TTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETT-SCEEEEEECTTSCEEEC--
T ss_pred CCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCC-CcEEEEEECCCCcEEeccc
Confidence 89999999986532 11 12245666666555555 445677754 456765543
No 59
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.78 E-value=2.4e-17 Score=173.42 Aligned_cols=205 Identities=20% Similarity=0.314 Sum_probs=157.2
Q ss_pred CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEEE
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDA 76 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~v 76 (563)
+|+++++|+.||+|++||. +++++.++.+|.+.|.+++| ++ .+++|+.||+|++|| +++++.++. |...|.++
T Consensus 142 d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l 219 (435)
T 1p22_A 142 DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHL 219 (435)
T ss_dssp CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEE
T ss_pred CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEE
Confidence 6789999999999999999 89999999999999999998 55 999999999999999 788888888 88899999
Q ss_pred EEccCCcEEEEeCCCcEEEEEcCCCceece-eeecccccccc------eeEEeeccCCceEEEeCCCCceeeec-ccCCC
Q 008510 77 KFLENGDIVTACSDGVTRIWTVHSDKVADS-LELEAYASELS------QYKLCRKKVGGLKLEDLPGLEALQIP-GTNAG 148 (563)
Q Consensus 77 ~~~p~g~i~sgs~Dg~Irvwd~~~~~~~~~-~~~~~~~~~v~------~~~~~~~~~~~i~~~d~~~~~~l~~~-g~~dg 148 (563)
+|++ +.+++|+.||.|++||+++++.... ..+..+...+. ...+++..++.|++||+...+.+... ++...
T Consensus 220 ~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 298 (435)
T 1p22_A 220 RFNN-GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRG 298 (435)
T ss_dssp ECCT-TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECCSSC
T ss_pred EEcC-CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCc
Confidence 9974 3599999999999999988763321 23334443333 44567788999999999887766544 45444
Q ss_pred eEEEEe-------cCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEcCCCCeeeeecCCCCCChh
Q 008510 149 QTKVVR-------EGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDIGDGEPTRKLPYNRSDNPY 221 (563)
Q Consensus 149 ~~~l~~-------~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~~dg~~~~~~~~n~~~~~w 221 (563)
...+.. +..++.+.+||..++.. ...+.+|. +.|.++.+ +|..++.+..|+.+++|
T Consensus 299 v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~---------------~~~~~~h~-~~v~~~~~-~~~~l~sg~~dg~i~vw 361 (435)
T 1p22_A 299 IACLQYRDRLVVSGSSDNTIRLWDIECGAC---------------LRVLEGHE-ELVRCIRF-DNKRIVSGAYDGKIKVW 361 (435)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEETTTCCE---------------EEEECCCS-SCEEEEEC-CSSEEEEEETTSCEEEE
T ss_pred EEEEEeCCCEEEEEeCCCeEEEEECCCCCE---------------EEEEeCCc-CcEEEEEe-cCCEEEEEeCCCcEEEE
Confidence 333222 22234456777654421 22355555 66888888 78889999999999999
Q ss_pred HHHHH
Q 008510 222 DAADK 226 (563)
Q Consensus 222 ~~a~~ 226 (563)
++...
T Consensus 362 d~~~~ 366 (435)
T 1p22_A 362 DLVAA 366 (435)
T ss_dssp EHHHH
T ss_pred ECCCC
Confidence 98654
No 60
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.78 E-value=6.3e-18 Score=174.31 Aligned_cols=203 Identities=12% Similarity=0.066 Sum_probs=148.6
Q ss_pred CCEEEEEECCCcEEEEcCCCceeEEEecCC---CcEEEEEEcCCC-eEEEEeCCCcEEEEc-CCceeEEEe-cCCcEEEE
Q 008510 3 GVGIISASHDCTIRLWALTGQVLMEMVGHT---AIVYSIDSHASG-LIVSGSEDRFAKIWK-DGVCVQSIE-HPGCVWDA 76 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~~g~~i~~l~gH~---~~V~~v~~~p~g-~l~s~s~D~tvriWd-~~~~~~~l~-h~~~V~~v 76 (563)
+++|++|+.|++|++||+.+..+..+.+|. ..|.+++|+|++ .+++|+.|++|++|| +++++..+. |...|.++
T Consensus 131 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~h~~~v~~~ 210 (383)
T 3ei3_B 131 TNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGHEIFKEKLHKAKVTHA 210 (383)
T ss_dssp EEEEEEEETTTEEEEEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTSCEEEEEECSSSCEEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEeccCCCcEEEE
Confidence 578999999999999999778777876655 889999999999 999999999999999 888888888 99999999
Q ss_pred EEccCCc--EEEEeCCCcEEEEEcCC----Cceeceeeecccccc---------cceeEEeeccCCceEEEeCCCCceee
Q 008510 77 KFLENGD--IVTACSDGVTRIWTVHS----DKVADSLELEAYASE---------LSQYKLCRKKVGGLKLEDLPGLEALQ 141 (563)
Q Consensus 77 ~~~p~g~--i~sgs~Dg~Irvwd~~~----~~~~~~~~~~~~~~~---------v~~~~~~~~~~~~i~~~d~~~~~~l~ 141 (563)
+|+|++. +++|+.|+.|++||+++ +...... .+... -....+++..++.|++||+.......
T Consensus 211 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~---~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 287 (383)
T 3ei3_B 211 EFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM---PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPD 287 (383)
T ss_dssp EECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE---ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCS
T ss_pred EECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe---cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccc
Confidence 9999987 79999999999999997 3322211 12222 23455677788999999997654322
Q ss_pred ec-c----------------cCCCeEEEE--------ecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcc-c
Q 008510 142 IP-G----------------TNAGQTKVV--------REGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQ-Y 195 (563)
Q Consensus 142 ~~-g----------------~~dg~~~l~--------~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~-~ 195 (563)
.. + ++++....+ ..+.++.+++||..++... ..+.++. .
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~s~s~d~~i~iwd~~~~~~~---------------~~l~~~~~~ 352 (383)
T 3ei3_B 288 QIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQLLLNDKRTIDIYDANSGGLV---------------HQLRDPNAA 352 (383)
T ss_dssp EEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTTCTTCCCCEEEEETTTCCEE---------------EEECBTTBC
T ss_pred ccccccccccccccceEEeccCCCCceEEEecCCcccccCCCCeEEEEecCCCcee---------------eeecCCCCC
Confidence 11 1 112222221 2234466778887665432 1233322 2
Q ss_pred CcEEEEEc-CCCCeeeeecCCCCCChhHHH
Q 008510 196 DYVFDVDI-GDGEPTRKLPYNRSDNPYDAA 224 (563)
Q Consensus 196 d~v~~vd~-~dg~~~~~~~~n~~~~~w~~a 224 (563)
..+..+.+ ++|..++++. |+.+++|++.
T Consensus 353 ~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~ 381 (383)
T 3ei3_B 353 GIISLNKFSPTGDVLASGM-GFNILIWNRE 381 (383)
T ss_dssp SCCCEEEECTTSSEEEEEE-TTEEEEEECC
T ss_pred ceEEEEEEecCccEEEEec-CCcEEEEecC
Confidence 44556688 8999888886 8999999874
No 61
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.78 E-value=1.6e-17 Score=169.21 Aligned_cols=163 Identities=26% Similarity=0.334 Sum_probs=122.8
Q ss_pred CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc-CCceeEEEe----cCCcEE
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-DGVCVQSIE----HPGCVW 74 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd-~~~~~~~l~----h~~~V~ 74 (563)
++.++++||.|++|++||+ +++++.++.+|...|++++|+|++ .+++|+.|++|++|| .+.+..... |...|.
T Consensus 87 ~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~ 166 (343)
T 2xzm_R 87 ENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVS 166 (343)
T ss_dssp STTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEE
T ss_pred CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceee
Confidence 4688999999999999999 899999999999999999999999 999999999999999 666555443 777999
Q ss_pred EEEEccCC----------c-EEEEeCCCcEEEEEcCCCceeceeeecccccccc--------eeEEeeccCCceEEEeCC
Q 008510 75 DAKFLENG----------D-IVTACSDGVTRIWTVHSDKVADSLELEAYASELS--------QYKLCRKKVGGLKLEDLP 135 (563)
Q Consensus 75 ~v~~~p~g----------~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~--------~~~~~~~~~~~i~~~d~~ 135 (563)
+++|+|++ . +++|+.||.|++||.+. +.. ..+..|...+. .+.+++..++.|++||+.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~--~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~ 243 (343)
T 2xzm_R 167 CVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF-QIR--YTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDIL 243 (343)
T ss_dssp EEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT-EEE--EEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESS
T ss_pred eeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC-cee--EEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECC
Confidence 99999986 5 89999999999999543 211 23333433332 455677889999999984
Q ss_pred CCc-----------eeeecccCCCeEEEEecCCCeEEEEEecccc
Q 008510 136 GLE-----------ALQIPGTNAGQTKVVREGDNGVAYSWDMKEQ 169 (563)
Q Consensus 136 ~~~-----------~l~~~g~~dg~~~l~~~~~~~~~~~wd~~~~ 169 (563)
... +.....++++.+..... + ..+.+|+..++
T Consensus 244 ~~~~~~~~~~~~~~v~~v~~sp~~~~la~~~-d-~~v~iw~~~~~ 286 (343)
T 2xzm_R 244 NLTYPQREFDAGSTINQIAFNPKLQWVAVGT-D-QGVKIFNLMTQ 286 (343)
T ss_dssp CCSSCSEEEECSSCEEEEEECSSSCEEEEEE-S-SCEEEEESSSC
T ss_pred CCcccceeecCCCcEEEEEECCCCCEEEEEC-C-CCEEEEEeCCC
Confidence 221 12223566666544333 3 33677886544
No 62
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.78 E-value=1.8e-17 Score=187.85 Aligned_cols=206 Identities=12% Similarity=0.077 Sum_probs=156.6
Q ss_pred CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEEE
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDA 76 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~v 76 (563)
+|.++++|+.||+|++||+ +++.+.++.+|.+.|.+++|+|+| .+++|+.|++|++|| +++.+..+. |.+.|+++
T Consensus 24 ~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~ 103 (814)
T 3mkq_A 24 TEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSI 103 (814)
T ss_dssp SSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred CCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEE
Confidence 5789999999999999999 899999999999999999999999 999999999999999 888888888 99999999
Q ss_pred EEccCCc-EEEEeCCCcEEEEEcCCCceeceeeeccccccc---------ceeEEeeccCCceEEEeCCCCceeee----
Q 008510 77 KFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASEL---------SQYKLCRKKVGGLKLEDLPGLEALQI---- 142 (563)
Q Consensus 77 ~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v---------~~~~~~~~~~~~i~~~d~~~~~~l~~---- 142 (563)
+|+|+|. +++|+.||.|++||++++... ...+..+...+ ....+++..++.|++||+.+......
T Consensus 104 ~~s~~~~~l~~~~~dg~i~vw~~~~~~~~-~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~ 182 (814)
T 3mkq_A 104 AVHPTKPYVLSGSDDLTVKLWNWENNWAL-EQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTG 182 (814)
T ss_dssp EECSSSSEEEEEETTSEEEEEEGGGTSEE-EEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECC
T ss_pred EEeCCCCEEEEEcCCCEEEEEECCCCceE-EEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecC
Confidence 9999998 999999999999999887322 11222222222 23555677889999999975543222
Q ss_pred --------cccC--CCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeee
Q 008510 143 --------PGTN--AGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRK 211 (563)
Q Consensus 143 --------~g~~--dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~ 211 (563)
..++ +|...+..+.+ +.+.+|+...+... ..+.+|. +.|..+.+ ++|..++.
T Consensus 183 ~~~~v~~~~~~~~~~~~~l~~~~~d-g~i~~~d~~~~~~~---------------~~~~~~~-~~v~~~~~~~~~~~l~~ 245 (814)
T 3mkq_A 183 QERGVNYVDYYPLPDKPYMITASDD-LTIKIWDYQTKSCV---------------ATLEGHM-SNVSFAVFHPTLPIIIS 245 (814)
T ss_dssp CTTCCCEEEECCSTTCCEEEEECTT-SEEEEEETTTTEEE---------------EEEECCS-SCEEEEEECSSSSEEEE
T ss_pred CCCCEEEEEEEECCCCCEEEEEeCC-CEEEEEECCCCcEE---------------EEEcCCC-CCEEEEEEcCCCCEEEE
Confidence 1223 56555555444 56778887665321 1233343 55777777 77877888
Q ss_pred ecCCCCCChhHHHH
Q 008510 212 LPYNRSDNPYDAAD 225 (563)
Q Consensus 212 ~~~n~~~~~w~~a~ 225 (563)
+..|+.+.+|+...
T Consensus 246 ~~~dg~v~vwd~~~ 259 (814)
T 3mkq_A 246 GSEDGTLKIWNSST 259 (814)
T ss_dssp EETTSCEEEEETTT
T ss_pred EeCCCeEEEEECCC
Confidence 88888888887653
No 63
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.78 E-value=4.4e-17 Score=166.42 Aligned_cols=220 Identities=10% Similarity=0.038 Sum_probs=157.0
Q ss_pred CCCEEEEEECCCcEEEEcC-CCceeEE--EecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCc---eeEEEe--cC
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVLME--MVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGV---CVQSIE--HP 70 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~--l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~---~~~~l~--h~ 70 (563)
+|++|++|+.||+|++||+ +++.... +.+|...|.+++|+|++ .+++++.|+.|++|| .+. ....+. |.
T Consensus 63 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~ 142 (372)
T 1k8k_C 63 DSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIR 142 (372)
T ss_dssp TTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCC
T ss_pred CCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccC
Confidence 5789999999999999999 6664443 47899999999999999 999999999999999 444 234443 78
Q ss_pred CcEEEEEEccCCc-EEEEeCCCcEEEEEcC------------------CCceeceeeecccccccc--------eeEEee
Q 008510 71 GCVWDAKFLENGD-IVTACSDGVTRIWTVH------------------SDKVADSLELEAYASELS--------QYKLCR 123 (563)
Q Consensus 71 ~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~------------------~~~~~~~~~~~~~~~~v~--------~~~~~~ 123 (563)
..|.+++|+|+++ +++|+.||.|++||++ .++... .+..+...+. ...+++
T Consensus 143 ~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~ 220 (372)
T 1k8k_C 143 STVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMF--ESSSSCGWVHGVCFSANGSRVAWV 220 (372)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEE--ECCCCSSCEEEEEECSSSSEEEEE
T ss_pred CCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheE--ecCCCCCeEEEEEECCCCCEEEEE
Confidence 8999999999998 9999999999999964 333221 2222222222 355677
Q ss_pred ccCCceEEEeCCCCceeeec-----------ccCCCeEEEEecCCCeEEEEEeccc--ceEEEeCcEeeCCC--------
Q 008510 124 KKVGGLKLEDLPGLEALQIP-----------GTNAGQTKVVREGDNGVAYSWDMKE--QKWDKLGEVVDGPD-------- 182 (563)
Q Consensus 124 ~~~~~i~~~d~~~~~~l~~~-----------g~~dg~~~l~~~~~~~~~~~wd~~~--~~w~~~g~v~~~~~-------- 182 (563)
..++.|++||+...+.+... .+++|.+.+.. .++.+++|+... +.|..+........
T Consensus 221 ~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (372)
T 1k8k_C 221 SHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG--HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTA 298 (372)
T ss_dssp ETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE--TTSSCEEEEEETTTTEEEECCCCCCC--------CH
T ss_pred eCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE--eCCeEEEEEccCcCceEEEeeccCccccchhhhcch
Confidence 78899999999766544322 34455544443 334557888877 88876644322100
Q ss_pred ---------CCCC-------ceeecCcccCcEEEEEc--CCC---CeeeeecCCCCCChhHHHHH
Q 008510 183 ---------DGMN-------RPILDGIQYDYVFDVDI--GDG---EPTRKLPYNRSDNPYDAADK 226 (563)
Q Consensus 183 ---------~~~~-------~~~~~g~~~d~v~~vd~--~dg---~~~~~~~~n~~~~~w~~a~~ 226 (563)
.+.. ..+..||. +.|.++.+ ++| ..+++++.|+.+++|++...
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~ 362 (372)
T 1k8k_C 299 RERFQNLDKKASSEGSAAAGAGLDSLHK-NSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSL 362 (372)
T ss_dssp HHHHHHCCCCC---------CCCSSSSS-SCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHH
T ss_pred hhhhhhcccccccccCcccccccccccc-CCcceeEEecCCCcceeeEEEecCCCceEEEEecCh
Confidence 0000 22334776 78999985 677 89999999999999998653
No 64
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.78 E-value=2.1e-18 Score=185.94 Aligned_cols=220 Identities=10% Similarity=0.015 Sum_probs=145.9
Q ss_pred CCEEEEEECCCcEEEEcC-CCc-----------eeEEEecCCCcEEEEEEcCCCeEEEEeCCCcEEEEc--CC-ceeEEE
Q 008510 3 GVGIISASHDCTIRLWAL-TGQ-----------VLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWK--DG-VCVQSI 67 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~-~g~-----------~i~~l~gH~~~V~~v~~~p~g~l~s~s~D~tvriWd--~~-~~~~~l 67 (563)
+.+|||||.||+||+||+ .++ +..++.+|...|++++|+|++.|++|+.||+|++|| ++ .....+
T Consensus 225 ~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~~~~~~~ 304 (524)
T 2j04_B 225 VGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVPSFYD 304 (524)
T ss_dssp SCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSSEEEEEETTSEEEEEETTBCSSCSEEE
T ss_pred CceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCCeEEEEeCCCEEEEEECCCCCCceEEe
Confidence 579999999999999999 443 234788999999999999877999999999999999 44 345566
Q ss_pred e-cCCcEEEE--EEccCC-c-EEEEeCCCcEEEEEcCCCceeceeeec-------cccccc-ceeEEeeccCCceEEEeC
Q 008510 68 E-HPGCVWDA--KFLENG-D-IVTACSDGVTRIWTVHSDKVADSLELE-------AYASEL-SQYKLCRKKVGGLKLEDL 134 (563)
Q Consensus 68 ~-h~~~V~~v--~~~p~g-~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~-------~~~~~v-~~~~~~~~~~~~i~~~d~ 134 (563)
. |...|++| +|+|+| . ++|||.|++||+||+++++......-. ...-.. ....+++..++.|++||+
T Consensus 305 ~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~ 384 (524)
T 2j04_B 305 QVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPS 384 (524)
T ss_dssp ECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEET
T ss_pred ecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEEC
Confidence 6 99999999 567887 6 899999999999999887643221100 001011 234556677889999999
Q ss_pred CCCcee-----------eecccCCCeEEEEecCCCeEEEEEecccce----------------EEEe----CcEeeCCC-
Q 008510 135 PGLEAL-----------QIPGTNAGQTKVVREGDNGVAYSWDMKEQK----------------WDKL----GEVVDGPD- 182 (563)
Q Consensus 135 ~~~~~l-----------~~~g~~dg~~~l~~~~~~~~~~~wd~~~~~----------------w~~~----g~v~~~~~- 182 (563)
+....+ .+..+++|...+..+.| +.+.+|+...+. |... +.++....
T Consensus 385 ~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~D-gtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~ 463 (524)
T 2j04_B 385 RAAFAVHPLVSRETTITAIGVSRLHPMVLAGSAD-GSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSS 463 (524)
T ss_dssp TCTTCCEEEEECSSCEEEEECCSSCCBCEEEETT-TEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCC
T ss_pred cccccceeeecCCCceEEEEeCCCCCeEEEEECC-CEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCC
Confidence 876432 22255566655544444 556677743221 1110 11110000
Q ss_pred --------CCCCceeecCcccCcEEEEEc-CCC---CeeeeecCCCCCChhHHH
Q 008510 183 --------DGMNRPILDGIQYDYVFDVDI-GDG---EPTRKLPYNRSDNPYDAA 224 (563)
Q Consensus 183 --------~~~~~~~~~g~~~d~v~~vd~-~dg---~~~~~~~~n~~~~~w~~a 224 (563)
.+.....+.||. ..|++|.| +++ ..++.+..++.+++|+..
T Consensus 464 ~~~~~~~~~g~~~~~l~gh~-~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~ 516 (524)
T 2j04_B 464 YEVYPLTVNDVSKAKIDAHG-INITCTKWNETSAGGKCYAFSNSAGLLTLEYLS 516 (524)
T ss_dssp CCCCC-------------CC-CSCCCEEECCSTTTTTEEEEECTTSEEEEEECS
T ss_pred ceecccccCCcceeeecCCC-ceEEEEECCCCCCccHHHHhhccCceEEEEEcc
Confidence 011123355565 67899999 774 478899999999999864
No 65
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.77 E-value=2.2e-17 Score=196.25 Aligned_cols=220 Identities=17% Similarity=0.232 Sum_probs=166.8
Q ss_pred CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEEE
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDA 76 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~v 76 (563)
+|+++++|+.||+|++||+ +++++.++.+|.+.|.+++|+|+| .+++|+.|++|+||| +++++.++. |...|+++
T Consensus 626 ~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~ 705 (1249)
T 3sfz_A 626 DGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCC 705 (1249)
T ss_dssp TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred CCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEE
Confidence 5789999999999999999 899999999999999999999999 999999999999999 889999998 88999999
Q ss_pred EEccCC--c-EEEEeCCCcEEEEEcCCCceeceeeecccccccc--------eeEEeeccCCceEEEeCCCCcee-----
Q 008510 77 KFLENG--D-IVTACSDGVTRIWTVHSDKVADSLELEAYASELS--------QYKLCRKKVGGLKLEDLPGLEAL----- 140 (563)
Q Consensus 77 ~~~p~g--~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~--------~~~~~~~~~~~i~~~d~~~~~~l----- 140 (563)
+|+|++ . +++|+.||.|++||+++++... .+..+...+. ...+++..++.|++||+......
T Consensus 706 ~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~--~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~ 783 (1249)
T 3sfz_A 706 HFTNKSNHLLLATGSNDFFLKLWDLNQKECRN--TMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINV 783 (1249)
T ss_dssp EECSSSSCCEEEEEETTSCEEEEETTSSSEEE--EECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEEC
T ss_pred EEecCCCceEEEEEeCCCeEEEEECCCcchhh--eecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecc
Confidence 999954 3 7899999999999999987443 3334444333 34556778899999998755322
Q ss_pred -------------------eecccCCCeEEEEecCCCeEEEEEecccceEEEe-----------------CcE-eeCCCC
Q 008510 141 -------------------QIPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKL-----------------GEV-VDGPDD 183 (563)
Q Consensus 141 -------------------~~~g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~-----------------g~v-~~~~~~ 183 (563)
....+++|...++... +.+++|+...+..... +.. +.+..+
T Consensus 784 ~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~--~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d 861 (1249)
T 3sfz_A 784 KRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAK--NKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQ 861 (1249)
T ss_dssp CCCC--------CCCCCBCCCCBCTTSSEEEEEET--TEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSS
T ss_pred cccccccCCccccccceEEEEEECCCCCEEEEEcC--CcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCC
Confidence 1235677777666653 4566787665543221 111 011011
Q ss_pred C----------CCceeecCcccCcEEEEEc-CCCCeeeeecCCCCCChhHHHHH
Q 008510 184 G----------MNRPILDGIQYDYVFDVDI-GDGEPTRKLPYNRSDNPYDAADK 226 (563)
Q Consensus 184 ~----------~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~~~~~w~~a~~ 226 (563)
+ .....+.||. +.|.++.+ ++|..+++.+.|+.+++|+....
T Consensus 862 g~v~vwd~~~~~~~~~~~~h~-~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~ 914 (1249)
T 3sfz_A 862 YCVELWNIDSRLKVADCRGHL-SWVHGVMFSPDGSSFLTASDDQTIRVWETKKV 914 (1249)
T ss_dssp SCEEEEETTTTEEEEEECCCS-SCEEEEEECTTSSEEEEEETTSCEEEEEHHHH
T ss_pred CeEEEEEcCCCceeeecCCCc-cceEEEEECCCCCEEEEEeCCCeEEEEEcccc
Confidence 0 0112345555 77999999 89999999999999999998754
No 66
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.77 E-value=4.1e-18 Score=177.60 Aligned_cols=205 Identities=12% Similarity=0.061 Sum_probs=155.0
Q ss_pred CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEEE
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDA 76 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~v 76 (563)
+|+++++|+.|++|++||. +++....+.+| ..+....++|++ .+++|+.|++|++|| .+++.+.+. |...|+++
T Consensus 67 ~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~ 145 (420)
T 3vl1_A 67 VGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKL 145 (420)
T ss_dssp EETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEE
T ss_pred cCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEE
Confidence 3678999999999999999 66666666666 555566788998 999999999999999 667777665 99999999
Q ss_pred EEccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccccc--------eeEEeeccCCceEEEeCCCCceeeec----
Q 008510 77 KFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELS--------QYKLCRKKVGGLKLEDLPGLEALQIP---- 143 (563)
Q Consensus 77 ~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~--------~~~~~~~~~~~i~~~d~~~~~~l~~~---- 143 (563)
+|+|+|+ +++|+.|+.|++||+++++... .+..+...+. ...+++..++.|++||+...+.+...
T Consensus 146 ~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~--~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~ 223 (420)
T 3vl1_A 146 KFFPSGEALISSSQDMQLKIWSVKDGSNPR--TLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKE 223 (420)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTTCCCCE--EEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTT
T ss_pred EECCCCCEEEEEeCCCeEEEEeCCCCcCce--EEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCC
Confidence 9999998 9999999999999999887432 3334444333 34556778899999999876554332
Q ss_pred -------------------------------ccCCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecC
Q 008510 144 -------------------------------GTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDG 192 (563)
Q Consensus 144 -------------------------------g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g 192 (563)
.+++|...+..+.+ +.+++||...+... ..+..
T Consensus 224 ~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g~i~i~d~~~~~~~---------------~~~~~ 287 (420)
T 3vl1_A 224 NPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVS-GVITVHNVFSKEQT---------------IQLPS 287 (420)
T ss_dssp BTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETT-SCEEEEETTTCCEE---------------EEECC
T ss_pred CCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCC-CeEEEEECCCCcee---------------EEccc
Confidence 24567776666655 55678887654311 11222
Q ss_pred cccCcEEEEEc-CCCC-eeeeecCCCCCChhHHHH
Q 008510 193 IQYDYVFDVDI-GDGE-PTRKLPYNRSDNPYDAAD 225 (563)
Q Consensus 193 ~~~d~v~~vd~-~dg~-~~~~~~~n~~~~~w~~a~ 225 (563)
.+...|.++.+ ++|. .++.+..|+.+.+|++..
T Consensus 288 ~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~ 322 (420)
T 3vl1_A 288 KFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRS 322 (420)
T ss_dssp TTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTC
T ss_pred ccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCC
Confidence 22367999999 8887 899999999999999853
No 67
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.76 E-value=1.8e-18 Score=182.16 Aligned_cols=185 Identities=10% Similarity=0.099 Sum_probs=131.1
Q ss_pred CCCEEEEEECCCcEEEEcC-CCc--eeEEEecCCCcEEEEEEcC-CC-eEEEEeCCCcEEEEc-CCceeEEEe----cCC
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQ--VLMEMVGHTAIVYSIDSHA-SG-LIVSGSEDRFAKIWK-DGVCVQSIE----HPG 71 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~--~i~~l~gH~~~V~~v~~~p-~g-~l~s~s~D~tvriWd-~~~~~~~l~----h~~ 71 (563)
++++||+|+.||+|+|||+ +++ ....+.||.+.|++++|+| ++ .|+|||.|++|++|| .+.....+. +..
T Consensus 131 ~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~ 210 (435)
T 4e54_B 131 HPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINI 210 (435)
T ss_dssp CTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSC
T ss_pred CCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCc
Confidence 3568999999999999999 444 4555679999999999998 56 999999999999999 767666665 233
Q ss_pred cEEEEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccccceeEEeeccCCceEEEeCCCCceeeecccCCCeE
Q 008510 72 CVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLCRKKVGGLKLEDLPGLEALQIPGTNAGQT 150 (563)
Q Consensus 72 ~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~d~~~~~~l~~~g~~dg~~ 150 (563)
.+.+++|+|+|. +++|+.||.|++||++.... ..+..|...+ ..+..++++..
T Consensus 211 ~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~---~~~~~h~~~v-----------------------~~v~~~p~~~~ 264 (435)
T 4e54_B 211 WFCSLDVSASSRMVVTGDNVGNVILLNMDGKEL---WNLRMHKKKV-----------------------THVALNPCCDW 264 (435)
T ss_dssp CCCCEEEETTTTEEEEECSSSBEEEEESSSCBC---CCSBCCSSCE-----------------------EEEEECTTCSS
T ss_pred cEEEEEECCCCCEEEEEeCCCcEeeeccCccee---EEEecccceE-----------------------EeeeecCCCce
Confidence 678999999998 89999999999999975431 1222232222 22223444444
Q ss_pred EEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeeeecCCCCCChhHHHH
Q 008510 151 KVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRKLPYNRSDNPYDAAD 225 (563)
Q Consensus 151 ~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~~~~~w~~a~ 225 (563)
.++..+.++.+.+||....... . ......+|. +.|.++.| ++|..+++.+.|+.+++|++.+
T Consensus 265 ~~~s~s~d~~v~iwd~~~~~~~--~----------~~~~~~~h~-~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~ 327 (435)
T 4e54_B 265 FLATASVDQTVKIWDLRQVRGK--A----------SFLYSLPHR-HPVNAACFSPDGARLLTTDQKSEIRVYSASQ 327 (435)
T ss_dssp EEEEEETTSBCCEEETTTCCSS--S----------CCSBCCBCS-SCEEECCBCTTSSEEEEEESSSCEEEEESSS
T ss_pred EEEEecCcceeeEEeccccccc--c----------eEEEeeecc-ccccceeECCCCCeeEEEcCCCEEEEEECCC
Confidence 4433333355566775443100 0 111123444 67899999 8999999999999999999753
No 68
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.76 E-value=4.2e-17 Score=163.81 Aligned_cols=202 Identities=12% Similarity=0.176 Sum_probs=149.8
Q ss_pred CCCEEEEEECCCcEEEEcC-CCc---eeEEEe--cCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCc--eeEEEe-c
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQ---VLMEMV--GHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGV--CVQSIE-H 69 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~---~i~~l~--gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~--~~~~l~-h 69 (563)
+|+++++++ ||+|++|++ +++ .+..+. +|...|.+++|+|++ .+++++.|++|++|| +++ ....+. |
T Consensus 62 ~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~ 140 (337)
T 1gxr_A 62 PTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSS 140 (337)
T ss_dssp SSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECS
T ss_pred CCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccC
Confidence 478899988 999999999 443 344444 899999999999999 899999999999999 444 445555 7
Q ss_pred CCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccccc--------eeEEeeccCCceEEEeCCCCcee
Q 008510 70 PGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELS--------QYKLCRKKVGGLKLEDLPGLEAL 140 (563)
Q Consensus 70 ~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~--------~~~~~~~~~~~i~~~d~~~~~~l 140 (563)
...|++++|+|+++ +++++.||.|++||+++++... .+..+...+. ...+++..++.+++||+...+.+
T Consensus 141 ~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~ 218 (337)
T 1gxr_A 141 APACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVR--QFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQL 218 (337)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE--EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE
T ss_pred CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceee--eeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceE
Confidence 88999999999998 8999999999999999887443 2223333222 34556778899999999877654
Q ss_pred eec----------ccCCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCee
Q 008510 141 QIP----------GTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPT 209 (563)
Q Consensus 141 ~~~----------g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~ 209 (563)
... .+++|...++.+.+ +.+++|+...+. ...+.++. +.|.++.+ ++|+.+
T Consensus 219 ~~~~~~~~v~~~~~s~~~~~l~~~~~~-~~i~~~~~~~~~----------------~~~~~~~~-~~v~~~~~~~~~~~l 280 (337)
T 1gxr_A 219 QQHDFTSQIFSLGYCPTGEWLAVGMES-SNVEVLHVNKPD----------------KYQLHLHE-SCVLSLKFAYCGKWF 280 (337)
T ss_dssp EEEECSSCEEEEEECTTSSEEEEEETT-SCEEEEETTSSC----------------EEEECCCS-SCEEEEEECTTSSEE
T ss_pred eeecCCCceEEEEECCCCCEEEEEcCC-CcEEEEECCCCC----------------eEEEcCCc-cceeEEEECCCCCEE
Confidence 433 34555555554444 345567654432 12234444 66899999 899999
Q ss_pred eeecCCCCCChhHHH
Q 008510 210 RKLPYNRSDNPYDAA 224 (563)
Q Consensus 210 ~~~~~n~~~~~w~~a 224 (563)
+....|+.+.+|++.
T Consensus 281 ~~~~~dg~i~~~~~~ 295 (337)
T 1gxr_A 281 VSTGKDNLLNAWRTP 295 (337)
T ss_dssp EEEETTSEEEEEETT
T ss_pred EEecCCCcEEEEECC
Confidence 999999999999874
No 69
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.76 E-value=1.4e-17 Score=168.92 Aligned_cols=221 Identities=13% Similarity=0.182 Sum_probs=150.9
Q ss_pred CCEEEEEECCCcEEEEcC-CCc-eeEEEecCCCcEEEEEE------cCCC-eEEEEeCCCcEEEEc--CCc-eeEEEe-c
Q 008510 3 GVGIISASHDCTIRLWAL-TGQ-VLMEMVGHTAIVYSIDS------HASG-LIVSGSEDRFAKIWK--DGV-CVQSIE-H 69 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~-~g~-~i~~l~gH~~~V~~v~~------~p~g-~l~s~s~D~tvriWd--~~~-~~~~l~-h 69 (563)
|++|++|+.||+|++||+ +++ ++..+.+|...|.+++| +|++ .+++|+.|++|++|| +++ .+..+. |
T Consensus 80 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~ 159 (357)
T 3i2n_A 80 QRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPV 159 (357)
T ss_dssp TCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCC
T ss_pred CceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceecccc
Confidence 689999999999999999 666 88999999999999965 6778 999999999999999 444 677776 3
Q ss_pred CC----cEEEEE----EccCCc-EEEEeCCCcEEEEEcCCCceeceee----ecccccc----cceeEEeeccCCceEEE
Q 008510 70 PG----CVWDAK----FLENGD-IVTACSDGVTRIWTVHSDKVADSLE----LEAYASE----LSQYKLCRKKVGGLKLE 132 (563)
Q Consensus 70 ~~----~V~~v~----~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~----~~~~~~~----v~~~~~~~~~~~~i~~~ 132 (563)
.+ .|++++ |+|++. +++|+.||.|++||+++++...... +....-. -....+++..++.|++|
T Consensus 160 ~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~ 239 (357)
T 3i2n_A 160 QGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVF 239 (357)
T ss_dssp TTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEE
T ss_pred CCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEE
Confidence 33 899999 678888 8999999999999999987532211 1111111 23556677788999999
Q ss_pred eCCCCcee----------------eecccCCCeEEEEecCCCeEEEEEecccceEEEe----CcEeeCCCCCCCceeecC
Q 008510 133 DLPGLEAL----------------QIPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKL----GEVVDGPDDGMNRPILDG 192 (563)
Q Consensus 133 d~~~~~~l----------------~~~g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~----g~v~~~~~~~~~~~~~~g 192 (563)
|++..... ....+++|...++....++.+++|+...+.-... +...+..+.......+.+
T Consensus 240 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 319 (357)
T 3i2n_A 240 DMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTL 319 (357)
T ss_dssp EEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEEC
T ss_pred eCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeecccc
Confidence 98643221 1224455553333333345667777654321100 000000000001233556
Q ss_pred cccCcEEEEEc-CCCCeee-eecCCCCCChhHHH
Q 008510 193 IQYDYVFDVDI-GDGEPTR-KLPYNRSDNPYDAA 224 (563)
Q Consensus 193 ~~~d~v~~vd~-~dg~~~~-~~~~n~~~~~w~~a 224 (563)
|. +.|.++.+ ++|+.++ +.+.|+.+++|++.
T Consensus 320 ~~-~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~ 352 (357)
T 3i2n_A 320 ST-QPISSLDWSPDKRGLCVCSSFDQTVRVLIVT 352 (357)
T ss_dssp CS-SCEEEEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred CC-CCeeEEEEcCCCCeEEEEecCCCcEEEEECC
Confidence 65 77999999 8999888 89999999999874
No 70
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.76 E-value=2.1e-17 Score=170.83 Aligned_cols=137 Identities=25% Similarity=0.370 Sum_probs=108.8
Q ss_pred CCEEEEEECCCcEEEEcC-CCceeEEE-----ecCCCcEEEEEEcC-CC-eEEEEeCCCcEEEEc---CCceeEEEe-cC
Q 008510 3 GVGIISASHDCTIRLWAL-TGQVLMEM-----VGHTAIVYSIDSHA-SG-LIVSGSEDRFAKIWK---DGVCVQSIE-HP 70 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~-~g~~i~~l-----~gH~~~V~~v~~~p-~g-~l~s~s~D~tvriWd---~~~~~~~l~-h~ 70 (563)
+..|++||.|++|++||+ +++++..+ .+|...|.++++++ ++ .+++|+.|++|++|| .+.+++++. |.
T Consensus 170 ~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~ 249 (380)
T 3iz6_a 170 ETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHE 249 (380)
T ss_dssp SSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCS
T ss_pred CCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcC
Confidence 457999999999999999 88888887 78999999999987 56 899999999999999 457788887 99
Q ss_pred CcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccc-----c--------ccceeEEeeccCCceEEEeCCC
Q 008510 71 GCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYA-----S--------ELSQYKLCRKKVGGLKLEDLPG 136 (563)
Q Consensus 71 ~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~-----~--------~v~~~~~~~~~~~~i~~~d~~~ 136 (563)
+.|++++|+|+|. +++|+.||+|++||+++++........... . .-....+++..++.|++||...
T Consensus 250 ~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~ 329 (380)
T 3iz6_a 250 GDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLL 329 (380)
T ss_dssp SCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTT
T ss_pred CCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCC
Confidence 9999999999998 999999999999999998754322211100 0 0123445666777888888765
Q ss_pred Cce
Q 008510 137 LEA 139 (563)
Q Consensus 137 ~~~ 139 (563)
.+.
T Consensus 330 ~~~ 332 (380)
T 3iz6_a 330 AEM 332 (380)
T ss_dssp CCE
T ss_pred Cce
Confidence 543
No 71
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.76 E-value=6.1e-18 Score=173.77 Aligned_cols=218 Identities=8% Similarity=0.040 Sum_probs=141.1
Q ss_pred CCCEEEEEECCCcEEEEcC-CCc---eeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCc---eeEEEe--c
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQ---VLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGV---CVQSIE--H 69 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~---~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~---~~~~l~--h 69 (563)
+|++|++|+.|++|++||+ +++ +...+.+|...|.+++|+|++ .+++|+.|++|++|| .++ +.+.+. |
T Consensus 66 ~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h 145 (377)
T 3dwl_C 66 KSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPL 145 (377)
T ss_dssp TTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSC
T ss_pred CCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeeccc
Confidence 4789999999999999999 555 678888999999999999999 899999999999999 443 466676 8
Q ss_pred CCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCcee----------------ceeeecccccccc--------eeEEeec
Q 008510 70 PGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVA----------------DSLELEAYASELS--------QYKLCRK 124 (563)
Q Consensus 70 ~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~----------------~~~~~~~~~~~v~--------~~~~~~~ 124 (563)
...|++++|+|+|. +++|+.|+.|++||++..... ....+ .+...+. ...+++.
T Consensus 146 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~ 224 (377)
T 3dwl_C 146 RSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAG 224 (377)
T ss_dssp CSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEE
T ss_pred CCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEe
Confidence 88999999999998 999999999999998633210 11111 2332222 3455677
Q ss_pred cCCceEEEeCCCCce----eee-----------cccCCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCC-----
Q 008510 125 KVGGLKLEDLPGLEA----LQI-----------PGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDG----- 184 (563)
Q Consensus 125 ~~~~i~~~d~~~~~~----l~~-----------~g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~----- 184 (563)
.++.|++||+..... +.. ..+++|.+.+... ++... +|+.....|...+.+.......
T Consensus 225 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (377)
T 3dwl_C 225 HDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGY-NYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHT 302 (377)
T ss_dssp TTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEES-SSSEE-EECCCC---CCSBCCCSCCCCCCBSSS
T ss_pred CCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEc-CCcEE-EEEeCCCceEEEeeecccccccccccc
Confidence 889999999987654 222 1344555544443 33333 5555444444332221110000
Q ss_pred --------------------------------CCceeecCcccCcEEEEEc-C-CCC---eeeeecCCCCCChhHH
Q 008510 185 --------------------------------MNRPILDGIQYDYVFDVDI-G-DGE---PTRKLPYNRSDNPYDA 223 (563)
Q Consensus 185 --------------------------------~~~~~~~g~~~d~v~~vd~-~-dg~---~~~~~~~n~~~~~w~~ 223 (563)
.......+|. +.|.++.+ + ++. .+++.+.|+.+++|++
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~-~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 303 GNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQ-NMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp SSBCCCCCC-------------------------CCCSSSCS-SCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred cccccccccccccccccccccccchhhccccccccccCcccc-ceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 0011122244 77888886 3 333 4899999999999974
No 72
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.76 E-value=2e-17 Score=186.67 Aligned_cols=212 Identities=16% Similarity=0.201 Sum_probs=150.4
Q ss_pred CCCEEEEEECCCcEEEEcC---CCceeEEEecCCCcEEEEEEcCC--C-eEEEEeCCCcEEEEc--CCc--eeEEEe-cC
Q 008510 2 PGVGIISASHDCTIRLWAL---TGQVLMEMVGHTAIVYSIDSHAS--G-LIVSGSEDRFAKIWK--DGV--CVQSIE-HP 70 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~---~g~~i~~l~gH~~~V~~v~~~p~--g-~l~s~s~D~tvriWd--~~~--~~~~l~-h~ 70 (563)
+|+++++|+.||+|++||+ +++++.++.+|.+.|++++|+|+ + .+++|+.||+|++|| +++ .+..+. |.
T Consensus 20 dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~ 99 (753)
T 3jro_A 20 YGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHS 99 (753)
T ss_dssp SSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCS
T ss_pred CCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCC
Confidence 5788999999999999998 35678899999999999999987 7 899999999999999 554 556666 88
Q ss_pred CcEEEEEEccC--Cc-EEEEeCCCcEEEEEcCCCceeceeeeccccccc---------------------ceeEEeeccC
Q 008510 71 GCVWDAKFLEN--GD-IVTACSDGVTRIWTVHSDKVADSLELEAYASEL---------------------SQYKLCRKKV 126 (563)
Q Consensus 71 ~~V~~v~~~p~--g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v---------------------~~~~~~~~~~ 126 (563)
..|++++|+|+ |. +++|+.||.|++||++++.......+..+...+ ....+++..+
T Consensus 100 ~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~d 179 (753)
T 3jro_A 100 ASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGAD 179 (753)
T ss_dssp SCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETT
T ss_pred CCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECC
Confidence 89999999998 87 999999999999999887433333333332221 3456677788
Q ss_pred CceEEEeCCCCce----ee-ecccCCCeEEEEecCC------------CeEEEEEecccceEEEeCcEeeCCCCCCCcee
Q 008510 127 GGLKLEDLPGLEA----LQ-IPGTNAGQTKVVREGD------------NGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPI 189 (563)
Q Consensus 127 ~~i~~~d~~~~~~----l~-~~g~~dg~~~l~~~~~------------~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~ 189 (563)
|.|++||++.... .. ..+|......+..+++ ++.+++|+...+.-. . ......
T Consensus 180 g~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~----~------~~~~~~ 249 (753)
T 3jro_A 180 NLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGP----W------KKTLLK 249 (753)
T ss_dssp SCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSC----C------BCCBSS
T ss_pred CeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCc----c------eeEEec
Confidence 9999999876521 11 1133333333333333 233455554332100 0 000111
Q ss_pred ecCcccCcEEEEEc-CCCCeeeeecCCCCCChhHHH
Q 008510 190 LDGIQYDYVFDVDI-GDGEPTRKLPYNRSDNPYDAA 224 (563)
Q Consensus 190 ~~g~~~d~v~~vd~-~dg~~~~~~~~n~~~~~w~~a 224 (563)
..++ .+.|.++.+ ++|..++.+..|+.+++|++.
T Consensus 250 ~~~~-~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~ 284 (753)
T 3jro_A 250 EEKF-PDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (753)
T ss_dssp SSCC-SSCCCCEEECTTTCCEEEECSSSCEECCBCC
T ss_pred cCCC-CCceEEEEEcCCCCEEEEEcCCCEEEEEecC
Confidence 1223 366888999 899999999999999999875
No 73
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.76 E-value=1.3e-17 Score=166.73 Aligned_cols=181 Identities=12% Similarity=0.057 Sum_probs=125.3
Q ss_pred CEEEEEE---CCCcEEEEcC--CCceeEEEecCCCcEEEEEEcC---CC-eEEEEeCCCcEEEEc--CCceeEEEe-cC-
Q 008510 4 VGIISAS---HDCTIRLWAL--TGQVLMEMVGHTAIVYSIDSHA---SG-LIVSGSEDRFAKIWK--DGVCVQSIE-HP- 70 (563)
Q Consensus 4 ~~l~s~s---~DgtIrlWd~--~g~~i~~l~gH~~~V~~v~~~p---~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~- 70 (563)
..+++++ .|++|++|++ +|+.+..+.+|...++.++|+| ++ .++|||.|++||||| ++++++++. |.
T Consensus 145 g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~ 224 (356)
T 2w18_A 145 RRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDS 224 (356)
T ss_dssp TEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC-
T ss_pred CcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCc
Confidence 3444444 4999999999 5899999999999999999999 56 899999999999999 899999997 33
Q ss_pred --CcEEEEEEccCCc-E------------EEEeCCCcEEEEEcCCCceeceeeecccccccceeEEeeccCCceEEEeCC
Q 008510 71 --GCVWDAKFLENGD-I------------VTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLCRKKVGGLKLEDLP 135 (563)
Q Consensus 71 --~~V~~v~~~p~g~-i------------~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~d~~ 135 (563)
..+.+++|+|+|. + ++|+.|++|++||..+++..... .+.++
T Consensus 225 ~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~-----------------------~~~~p 281 (356)
T 2w18_A 225 YQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVM-----------------------LYCLP 281 (356)
T ss_dssp --CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEE-----------------------EECCC
T ss_pred ceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEE-----------------------Eeecc
Confidence 3788889999998 4 56888999999999988744211 11111
Q ss_pred CCce-eeecccCCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeeeec
Q 008510 136 GLEA-LQIPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRKLP 213 (563)
Q Consensus 136 ~~~~-l~~~g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~ 213 (563)
.+.. ....++.+|...+..+.| +.+.+||..+++.. ..+.||....+..+.| +||+.+++++
T Consensus 282 ~Gh~~~~lsg~~sg~~lASgS~D-gTIkIWDl~tGk~l---------------~tL~gH~~~vvs~vafSPDG~~LaSGS 345 (356)
T 2w18_A 282 PGQAGRFLEGDVKDHCAAAILTS-GTIAIWDLLLGQCT---------------ALLPPVSDQHWSFVKWSGTDSHLLAGQ 345 (356)
T ss_dssp TTCCCCEEEEEEETTEEEEEETT-SCEEEEETTTCSEE---------------EEECCC--CCCCEEEECSSSSEEEEEC
T ss_pred CCCcceeEccccCCCEEEEEcCC-CcEEEEECCCCcEE---------------EEecCCCCCeEEEEEECCCCCEEEEEE
Confidence 1110 011233334444444444 45677887665422 2355665233335889 9999999999
Q ss_pred CCCCCChhHH
Q 008510 214 YNRSDNPYDA 223 (563)
Q Consensus 214 ~n~~~~~w~~ 223 (563)
.|+++++|++
T Consensus 346 ~D~TIklWd~ 355 (356)
T 2w18_A 346 KDGNIFVYHY 355 (356)
T ss_dssp TTSCEEEEEE
T ss_pred CCCcEEEecC
Confidence 9999999974
No 74
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.76 E-value=2.8e-17 Score=172.98 Aligned_cols=211 Identities=19% Similarity=0.303 Sum_probs=150.6
Q ss_pred CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCCeEEEEeCCCcEEEEc--CCcee---EEEe-cCCcEE
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWK--DGVCV---QSIE-HPGCVW 74 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g~l~s~s~D~tvriWd--~~~~~---~~l~-h~~~V~ 74 (563)
+++++++|+.||+|++||+ +++++.++.+|...|.+++|+++ .+++|+.|++|++|| ++... ..+. |...|.
T Consensus 182 ~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~ 260 (435)
T 1p22_A 182 DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNG-MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN 260 (435)
T ss_dssp CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCTT-EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEE
T ss_pred CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcCC-EEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEE
Confidence 5789999999999999999 89999999999999999999754 899999999999999 44444 4444 888999
Q ss_pred EEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccccc------eeEEeeccCCceEEEeCCCCceeeec-ccC
Q 008510 75 DAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELS------QYKLCRKKVGGLKLEDLPGLEALQIP-GTN 146 (563)
Q Consensus 75 ~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~------~~~~~~~~~~~i~~~d~~~~~~l~~~-g~~ 146 (563)
+++| ++. +++|+.||.|++||+++++.... +..+...+. ...+++..++.|++||+.....+... ++.
T Consensus 261 ~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~ 336 (435)
T 1p22_A 261 VVDF--DDKYIVSASGDRTIKVWNTSTCEFVRT--LNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHE 336 (435)
T ss_dssp EEEE--ETTEEEEEETTSEEEEEETTTCCEEEE--EECCSSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECCCS
T ss_pred EEEe--CCCEEEEEeCCCeEEEEECCcCcEEEE--EcCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCc
Confidence 9999 556 99999999999999999875432 333333332 45567788999999999877665443 444
Q ss_pred CC--------eEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEcCCCCeeeeecCCCCC
Q 008510 147 AG--------QTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDIGDGEPTRKLPYNRSD 218 (563)
Q Consensus 147 dg--------~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~~dg~~~~~~~~n~~~ 218 (563)
.. ...+..+.+ +.+.+||...+.- ............+.+|. +.|.++.+ +|..+++++.|+.+
T Consensus 337 ~~v~~~~~~~~~l~sg~~d-g~i~vwd~~~~~~------~~~~~~~~~~~~~~~h~-~~v~~l~~-~~~~l~s~s~Dg~i 407 (435)
T 1p22_A 337 ELVRCIRFDNKRIVSGAYD-GKIKVWDLVAALD------PRAPAGTLCLRTLVEHS-GRVFRLQF-DEFQIVSSSHDDTI 407 (435)
T ss_dssp SCEEEEECCSSEEEEEETT-SCEEEEEHHHHTS------TTSCTTTTEEEEECCCS-SCCCCEEE-CSSCEEECCSSSEE
T ss_pred CcEEEEEecCCEEEEEeCC-CcEEEEECCCCCC------ccccccchheeeccCCC-CCeEEEEe-CCCEEEEEeCCCEE
Confidence 33 333333333 4455666543310 00000000123355665 67888888 78889999999999
Q ss_pred ChhHHHHH
Q 008510 219 NPYDAADK 226 (563)
Q Consensus 219 ~~w~~a~~ 226 (563)
.+|++...
T Consensus 408 ~iwd~~~~ 415 (435)
T 1p22_A 408 LIWDFLND 415 (435)
T ss_dssp EEEC----
T ss_pred EEEECCCC
Confidence 99998654
No 75
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.76 E-value=8e-17 Score=167.11 Aligned_cols=205 Identities=17% Similarity=0.250 Sum_probs=149.8
Q ss_pred CCC-EEEEEECCCcEEEEcC----C-Cc------eeEEEec----------CCCcEEEEEEcCCC-eEEEEeCCCcEEEE
Q 008510 2 PGV-GIISASHDCTIRLWAL----T-GQ------VLMEMVG----------HTAIVYSIDSHASG-LIVSGSEDRFAKIW 58 (563)
Q Consensus 2 ~g~-~l~s~s~DgtIrlWd~----~-g~------~i~~l~g----------H~~~V~~v~~~p~g-~l~s~s~D~tvriW 58 (563)
+|+ +|++|+.||+|++|++ . ++ ....+.. |.+.|++++|+|++ .+++|+.|++|++|
T Consensus 56 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~ 135 (425)
T 1r5m_A 56 LDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLW 135 (425)
T ss_dssp SCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred CCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEEEEeCCCeEEEE
Confidence 467 9999999999999998 4 44 3444544 78899999999999 99999999999999
Q ss_pred c-CCceeEEEe-cCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeecc--------------------cccc
Q 008510 59 K-DGVCVQSIE-HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEA--------------------YASE 115 (563)
Q Consensus 59 d-~~~~~~~l~-h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~--------------------~~~~ 115 (563)
+ +++.+..+. |...|++++|+|+++ +++++.||.|++||+++++......... ..-.
T Consensus 136 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (425)
T 1r5m_A 136 NKTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWV 215 (425)
T ss_dssp ETTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEE
T ss_pred eCCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEc
Confidence 9 888888888 888999999999998 9999999999999999887543322211 1111
Q ss_pred cceeEEeeccCCceEEEeCCCCceeeec-cc----------CCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCC
Q 008510 116 LSQYKLCRKKVGGLKLEDLPGLEALQIP-GT----------NAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDG 184 (563)
Q Consensus 116 v~~~~~~~~~~~~i~~~d~~~~~~l~~~-g~----------~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~ 184 (563)
.....+++..++.|.+||+.....+... ++ +++...+..+.+ +.+++|+...+.
T Consensus 216 ~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-~~i~i~d~~~~~-------------- 280 (425)
T 1r5m_A 216 DDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDD-GTLRIWHGGNGN-------------- 280 (425)
T ss_dssp ETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETT-SCEEEECSSSBS--------------
T ss_pred CCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCC-CEEEEEECCCCc--------------
Confidence 2244567778899999999876544332 33 344433333333 344566654321
Q ss_pred CCceeecCcccCcEEEEEc-CCCCeeeeecCCCCCChhHHH
Q 008510 185 MNRPILDGIQYDYVFDVDI-GDGEPTRKLPYNRSDNPYDAA 224 (563)
Q Consensus 185 ~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~~~~~w~~a 224 (563)
....+.++. ..|.++.+ ++| .++....|+.+.+|+..
T Consensus 281 -~~~~~~~~~-~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~ 318 (425)
T 1r5m_A 281 -SQNCFYGHS-QSIVSASWVGDD-KVISCSMDGSVRLWSLK 318 (425)
T ss_dssp -CSEEECCCS-SCEEEEEEETTT-EEEEEETTSEEEEEETT
T ss_pred -cceEecCCC-ccEEEEEECCCC-EEEEEeCCCcEEEEECC
Confidence 233455554 67899999 788 89999999999999974
No 76
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.75 E-value=3.9e-17 Score=169.79 Aligned_cols=205 Identities=18% Similarity=0.147 Sum_probs=145.4
Q ss_pred EEEEECCCcEEEEcC-C-C---ceeEEEecCCCcEEEEEEcC-CC-eEEEEeCCCcEEEEc--CC-------ceeEEEe-
Q 008510 6 IISASHDCTIRLWAL-T-G---QVLMEMVGHTAIVYSIDSHA-SG-LIVSGSEDRFAKIWK--DG-------VCVQSIE- 68 (563)
Q Consensus 6 l~s~s~DgtIrlWd~-~-g---~~i~~l~gH~~~V~~v~~~p-~g-~l~s~s~D~tvriWd--~~-------~~~~~l~- 68 (563)
+++|+.||.|++|++ . + ..+..+.+|.+.|++++|+| ++ .+++|+.|++|++|+ ++ +++..+.
T Consensus 50 ~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~ 129 (402)
T 2aq5_A 50 ICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEG 129 (402)
T ss_dssp EBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEEC
T ss_pred EEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecC
Confidence 446889999999998 3 3 34567889999999999999 77 999999999999999 44 5677777
Q ss_pred cCCcEEEEEEccCC-c-EEEEeCCCcEEEEEcCCCceeceeeecccccccc--------eeEEeeccCCceEEEeCCCCc
Q 008510 69 HPGCVWDAKFLENG-D-IVTACSDGVTRIWTVHSDKVADSLELEAYASELS--------QYKLCRKKVGGLKLEDLPGLE 138 (563)
Q Consensus 69 h~~~V~~v~~~p~g-~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~--------~~~~~~~~~~~i~~~d~~~~~ 138 (563)
|...|++++|+|+| . +++|+.||.|++||+++++.........+...+. ...+++..++.|++||++..+
T Consensus 130 h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 209 (402)
T 2aq5_A 130 HTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGT 209 (402)
T ss_dssp CSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTE
T ss_pred CCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCc
Confidence 99999999999998 4 8999999999999999987543321133443333 345567788999999998765
Q ss_pred eeeec-------------ccCCCeEEEEec--CCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc
Q 008510 139 ALQIP-------------GTNAGQTKVVRE--GDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI 203 (563)
Q Consensus 139 ~l~~~-------------g~~dg~~~l~~~--~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~ 203 (563)
.+... .+++|.+.+... ..++.+++||...+.- ............+..+.+
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~--------------~~~~~~~~~~~~v~~~~~ 275 (402)
T 2aq5_A 210 VVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEE--------------PLSLQELDTSSGVLLPFF 275 (402)
T ss_dssp EEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSS--------------CSEEEECCCCSSCEEEEE
T ss_pred eeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccC--------------CceEEeccCCCceeEEEE
Confidence 54332 233444444331 2345566777544310 011111112245788888
Q ss_pred -CCCCeee-eecCCCCCChhHHH
Q 008510 204 -GDGEPTR-KLPYNRSDNPYDAA 224 (563)
Q Consensus 204 -~dg~~~~-~~~~n~~~~~w~~a 224 (563)
++|..++ ....|+.+.+|++.
T Consensus 276 s~~~~~l~~~g~~dg~i~i~d~~ 298 (402)
T 2aq5_A 276 DPDTNIVYLCGKGDSSIRYFEIT 298 (402)
T ss_dssp ETTTTEEEEEETTCSCEEEEEEC
T ss_pred cCCCCEEEEEEcCCCeEEEEEec
Confidence 8888775 45578999999875
No 77
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.75 E-value=7.7e-17 Score=166.41 Aligned_cols=220 Identities=14% Similarity=0.083 Sum_probs=159.6
Q ss_pred CCCEEEEEECCCcEEEEcC-CCceeEEEe-------------cCCCcEEEEEEcC-CC-eEEEEeCCCcEEEEc--CCce
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVLMEMV-------------GHTAIVYSIDSHA-SG-LIVSGSEDRFAKIWK--DGVC 63 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~-------------gH~~~V~~v~~~p-~g-~l~s~s~D~tvriWd--~~~~ 63 (563)
+|++|++|+.||+|++||+ +++....+. +|...|.+++|+| ++ .+++++.|++|++|| +++.
T Consensus 55 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~ 134 (408)
T 4a11_B 55 EGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQT 134 (408)
T ss_dssp TCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEE
T ss_pred CCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCcc
Confidence 5889999999999999999 555544443 6999999999999 55 899999999999999 7788
Q ss_pred eEEEecCCcEEEEEEccC---Cc-EEEEeCCCcEEEEEcCCCceeceeeecccccccc--------e-eEEeeccCCceE
Q 008510 64 VQSIEHPGCVWDAKFLEN---GD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELS--------Q-YKLCRKKVGGLK 130 (563)
Q Consensus 64 ~~~l~h~~~V~~v~~~p~---g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~--------~-~~~~~~~~~~i~ 130 (563)
+..+.+...+.++.++|. +. +++|+.||.|++||+++++... .+..+...+. . ..+++..++.|+
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~--~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~ 212 (408)
T 4a11_B 135 ADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSH--ILQGHRQEILAVSWSPRYDYILATASADSRVK 212 (408)
T ss_dssp EEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCE--EECCCCSCEEEEEECSSCTTEEEEEETTSCEE
T ss_pred ceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceee--eecCCCCcEEEEEECCCCCcEEEEEcCCCcEE
Confidence 888888889999999984 34 8999999999999999876432 2233333222 2 456788899999
Q ss_pred EEeCCCCc---------------------------eeeecccCCCeEEEEecCCCeEEEEEecccceEEEeC--------
Q 008510 131 LEDLPGLE---------------------------ALQIPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLG-------- 175 (563)
Q Consensus 131 ~~d~~~~~---------------------------~l~~~g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g-------- 175 (563)
+||++... +.....+++|...+..+.+ +.+++|+...+......
T Consensus 213 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g~i~vwd~~~~~~~~~~~~~~~~~~ 291 (408)
T 4a11_B 213 LWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTD-NRMRLWNSSNGENTLVNYGKVCNNS 291 (408)
T ss_dssp EEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETT-SCEEEEETTTCCBCCCCCCCCCCCC
T ss_pred EEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCC-CeEEEEECCCCccceeccccccccc
Confidence 99996432 2223356677766666655 45678987665321110
Q ss_pred --------------cEeeCC----------CCCCCceeecCcccCcEEEEEc-CCCCeeeeecCCCCCChhHHHH
Q 008510 176 --------------EVVDGP----------DDGMNRPILDGIQYDYVFDVDI-GDGEPTRKLPYNRSDNPYDAAD 225 (563)
Q Consensus 176 --------------~v~~~~----------~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~~~~~w~~a~ 225 (563)
.+.... ..+.....+.+|. +.|.++.+ ++|..++++..|+.+.+|++..
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 365 (408)
T 4a11_B 292 KKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHY-KTVDCCVFQSNFQELYSGSRDCNILAWVPSL 365 (408)
T ss_dssp SSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCS-SCEEEEEEETTTTEEEEEETTSCEEEEEECC
T ss_pred cccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCC-CeEEEEEEcCCCCEEEEECCCCeEEEEeCCC
Confidence 000000 0011223355665 77999999 9999999999999999999864
No 78
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.75 E-value=1.8e-17 Score=174.03 Aligned_cols=206 Identities=13% Similarity=0.206 Sum_probs=145.2
Q ss_pred CCCEEEEEECCCcEEEEcC-CCc-----------eeEEEecCC------------CcEEEEEEcCCC---eEEEEeCCCc
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQ-----------VLMEMVGHT------------AIVYSIDSHASG---LIVSGSEDRF 54 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~-----------~i~~l~gH~------------~~V~~v~~~p~g---~l~s~s~D~t 54 (563)
+|++|++|+.||+|++|++ +++ +..++.+|. +.|.+++|+|++ .+++++.|++
T Consensus 39 ~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~ 118 (447)
T 3dw8_B 39 SGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKT 118 (447)
T ss_dssp SSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSC
T ss_pred CCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCe
Confidence 5789999999999999999 555 588999998 889999999985 7999999999
Q ss_pred EEEEc--CCce---------------------------------------eEEE-e-cCCcEEEEEEccCCc-EEEEeCC
Q 008510 55 AKIWK--DGVC---------------------------------------VQSI-E-HPGCVWDAKFLENGD-IVTACSD 90 (563)
Q Consensus 55 vriWd--~~~~---------------------------------------~~~l-~-h~~~V~~v~~~p~g~-i~sgs~D 90 (563)
|++|+ .+.. ...+ . |...|++++|+|+|+ +++| .|
T Consensus 119 i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d 197 (447)
T 3dw8_B 119 IKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSA-DD 197 (447)
T ss_dssp EEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEE-CS
T ss_pred EEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEEe-CC
Confidence 99999 3222 1133 2 888999999999999 7887 89
Q ss_pred CcEEEEEcCCCc-eecee-----eecccccccc---------eeEEeeccCCceEEEeCCCCce----ee----------
Q 008510 91 GVTRIWTVHSDK-VADSL-----ELEAYASELS---------QYKLCRKKVGGLKLEDLPGLEA----LQ---------- 141 (563)
Q Consensus 91 g~Irvwd~~~~~-~~~~~-----~~~~~~~~v~---------~~~~~~~~~~~i~~~d~~~~~~----l~---------- 141 (563)
+.|++||+++.. ..... .+..+...+. ...+++..++.|++||++.... +.
T Consensus 198 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 277 (447)
T 3dw8_B 198 LRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSN 277 (447)
T ss_dssp SEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----
T ss_pred CeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccc
Confidence 999999998433 22211 1233333222 4566778899999999987653 11
Q ss_pred -------------ecccCCCeEEEEecCCCeEEEEEeccc-ceEEEeCcEeeCCCCCCCceeecCccc-----------C
Q 008510 142 -------------IPGTNAGQTKVVREGDNGVAYSWDMKE-QKWDKLGEVVDGPDDGMNRPILDGIQY-----------D 196 (563)
Q Consensus 142 -------------~~g~~dg~~~l~~~~~~~~~~~wd~~~-~~w~~~g~v~~~~~~~~~~~~~~g~~~-----------d 196 (563)
...+++|.+.+..+. +.+.+||... +. ....+.+|.. +
T Consensus 278 ~~~~~~~~~~v~~~~~s~~g~~l~~~~~--~~v~iwd~~~~~~---------------~~~~~~~~~~~~~~l~~~~~~~ 340 (447)
T 3dw8_B 278 RSFFSEIISSISDVKFSHSGRYMMTRDY--LSVKVWDLNMENR---------------PVETYQVHEYLRSKLCSLYEND 340 (447)
T ss_dssp CCHHHHHTTCEEEEEECTTSSEEEEEES--SEEEEEETTCCSS---------------CSCCEESCGGGTTTHHHHHHTS
T ss_pred cccccccCceEEEEEECCCCCEEEEeeC--CeEEEEeCCCCcc---------------ccceeecccccccccccccccc
Confidence 124455555444433 5566777643 21 1122333321 1
Q ss_pred c---EEEEEc-CCCCeeeeecCCCCCChhHHHH
Q 008510 197 Y---VFDVDI-GDGEPTRKLPYNRSDNPYDAAD 225 (563)
Q Consensus 197 ~---v~~vd~-~dg~~~~~~~~n~~~~~w~~a~ 225 (563)
. ++.+.+ ++|..++++..|+.+++|++..
T Consensus 341 ~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~ 373 (447)
T 3dw8_B 341 CIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNT 373 (447)
T ss_dssp GGGCCCCEEECTTSSEEEEECSTTEEEEEETTT
T ss_pred ccccceEEEECCCCCEEEEeccCCEEEEEEcCC
Confidence 2 345888 8999999999999999999864
No 79
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.75 E-value=2.2e-17 Score=169.95 Aligned_cols=188 Identities=11% Similarity=0.065 Sum_probs=136.1
Q ss_pred CCCEEE--EEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc-CCceeEEEe---cCCcE
Q 008510 2 PGVGII--SASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-DGVCVQSIE---HPGCV 73 (563)
Q Consensus 2 ~g~~l~--s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd-~~~~~~~l~---h~~~V 73 (563)
||++++ +++.|++||+||+ +++++.++. |...|++++|+|+| .+++++.|+.+++|. +++.+.... |...|
T Consensus 144 Dg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~v 222 (365)
T 4h5i_A 144 EGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIARKTDFDKNWSL 222 (365)
T ss_dssp TSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEEEECCCCTTEEE
T ss_pred CCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEeccceeEEEEEeccCcceeeeecCCCCCCE
Confidence 567765 4557999999999 888888875 78889999999999 888888666555555 777655433 77799
Q ss_pred EEEEEccCCc-EEEEeCCC----cEEEEEcCCCceeceeeecccccccceeEEeeccCCceEEEeCCCCceeeecccCCC
Q 008510 74 WDAKFLENGD-IVTACSDG----VTRIWTVHSDKVADSLELEAYASELSQYKLCRKKVGGLKLEDLPGLEALQIPGTNAG 148 (563)
Q Consensus 74 ~~v~~~p~g~-i~sgs~Dg----~Irvwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~d~~~~~~l~~~g~~dg 148 (563)
++++|+|+|. +++++.|+ .++.|+.......... .. ...-....+.....++||
T Consensus 223 ~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~-~~--------------------~~~~~~~~V~~~~~Spdg 281 (365)
T 4h5i_A 223 SKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLR-SK--------------------QVTNRFKGITSMDVDMKG 281 (365)
T ss_dssp EEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEE-EE--------------------EEESSCSCEEEEEECTTS
T ss_pred EEEEEcCCCCEEEEEecCCcceeEEeecccccceeccee-ee--------------------eecCCCCCeEeEEECCCC
Confidence 9999999999 88888887 6888998776522110 00 001111123334467888
Q ss_pred eEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeeeecCCCCCChhHHHHHH
Q 008510 149 QTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRKLPYNRSDNPYDAADKW 227 (563)
Q Consensus 149 ~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~~~~~w~~a~~f 227 (563)
.+.+..+.| +.+.+||..+++... .+..||. +.|.++.| +||+.+++++.|+++++|++.+.|
T Consensus 282 ~~lasgs~D-~~V~iwd~~~~~~~~--------------~~~~gH~-~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~~ 345 (365)
T 4h5i_A 282 ELAVLASND-NSIALVKLKDLSMSK--------------IFKQAHS-FAITEVTISPDSTYVASVSAANTIHIIKLPLNY 345 (365)
T ss_dssp CEEEEEETT-SCEEEEETTTTEEEE--------------EETTSSS-SCEEEEEECTTSCEEEEEETTSEEEEEECCTTT
T ss_pred CceEEEcCC-CEEEEEECCCCcEEE--------------EecCccc-CCEEEEEECCCCCEEEEEeCCCeEEEEEcCCCC
Confidence 887777766 556789987654221 1235665 78999999 999999999999999999985443
No 80
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.75 E-value=6.7e-17 Score=167.68 Aligned_cols=205 Identities=18% Similarity=0.244 Sum_probs=156.0
Q ss_pred CCCEEEEEECCCcEEEEcCCCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCc-----
Q 008510 2 PGVGIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGC----- 72 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~----- 72 (563)
+|++|++|+.||+|++||.+++.+..+.+|...|.+++|+|++ .+++++.|++|++|| +++.++.+. +...
T Consensus 119 ~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 198 (425)
T 1r5m_A 119 DGNSIVTGVENGELRLWNKTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSIN 198 (425)
T ss_dssp TSSEEEEEETTSCEEEEETTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC--------
T ss_pred CCCEEEEEeCCCeEEEEeCCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCcccee
Confidence 5789999999999999999999999999999999999999999 899999999999999 778888877 4444
Q ss_pred ----------EEEEEEccCCcEEEEeCCCcEEEEEcCCCceeceeeecccccccc--------eeEEeeccCCceEEEeC
Q 008510 73 ----------VWDAKFLENGDIVTACSDGVTRIWTVHSDKVADSLELEAYASELS--------QYKLCRKKVGGLKLEDL 134 (563)
Q Consensus 73 ----------V~~v~~~p~g~i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~--------~~~~~~~~~~~i~~~d~ 134 (563)
+.+++|+|++.+++++.||.|++||+++++... .+..+...+. ...+++..++.|++||+
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~ 276 (425)
T 1r5m_A 199 AENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTG--KLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHG 276 (425)
T ss_dssp -------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSE--EECCCSSCEEEEEEETTTTEEEEEETTSCEEEECS
T ss_pred eccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceee--eeccCCCceEEEEECCCCCEEEEEcCCCEEEEEEC
Confidence 999999999889999999999999999876432 2223332222 35556777899999999
Q ss_pred CCCceeeec-----------ccCCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc
Q 008510 135 PGLEALQIP-----------GTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI 203 (563)
Q Consensus 135 ~~~~~l~~~-----------g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~ 203 (563)
...+.+... .+++| . ++....++.+++|+...+... ..+.++. ..|.++.+
T Consensus 277 ~~~~~~~~~~~~~~~i~~~~~~~~~-~-l~~~~~d~~i~i~d~~~~~~~---------------~~~~~~~-~~i~~~~~ 338 (425)
T 1r5m_A 277 GNGNSQNCFYGHSQSIVSASWVGDD-K-VISCSMDGSVRLWSLKQNTLL---------------ALSIVDG-VPIFAGRI 338 (425)
T ss_dssp SSBSCSEEECCCSSCEEEEEEETTT-E-EEEEETTSEEEEEETTTTEEE---------------EEEECTT-CCEEEEEE
T ss_pred CCCccceEecCCCccEEEEEECCCC-E-EEEEeCCCcEEEEECCCCcEe---------------EecccCC-ccEEEEEE
Confidence 866443322 33455 2 333333356677876554321 1233333 56899999
Q ss_pred -CCCCeeeeecCCCCCChhHHHHH
Q 008510 204 -GDGEPTRKLPYNRSDNPYDAADK 226 (563)
Q Consensus 204 -~dg~~~~~~~~n~~~~~w~~a~~ 226 (563)
++|..++....|+.+.+|++...
T Consensus 339 s~~~~~l~~~~~dg~i~i~~~~~~ 362 (425)
T 1r5m_A 339 SQDGQKYAVAFMDGQVNVYDLKKL 362 (425)
T ss_dssp CTTSSEEEEEETTSCEEEEECHHH
T ss_pred cCCCCEEEEEECCCeEEEEECCCC
Confidence 89999999999999999998754
No 81
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.74 E-value=2e-17 Score=166.60 Aligned_cols=174 Identities=17% Similarity=0.220 Sum_probs=125.7
Q ss_pred CCEEEEEECCCcEEEEcC-CC--ceeEEEecCCCcEEEEEEcCC--C-eEEEEeCCCcEEEEc-C-Cce---eEEEe-cC
Q 008510 3 GVGIISASHDCTIRLWAL-TG--QVLMEMVGHTAIVYSIDSHAS--G-LIVSGSEDRFAKIWK-D-GVC---VQSIE-HP 70 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~-~g--~~i~~l~gH~~~V~~v~~~p~--g-~l~s~s~D~tvriWd-~-~~~---~~~l~-h~ 70 (563)
|++|+|||.|++|++||+ ++ +++.++.+|...|.+++|+|+ | .+++|+.|++|++|+ . +.. ...+. |.
T Consensus 71 ~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~ 150 (316)
T 3bg1_A 71 GNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHT 150 (316)
T ss_dssp SSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSS
T ss_pred CCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeecccc
Confidence 789999999999999999 55 467788999999999999997 6 899999999999999 3 322 22233 88
Q ss_pred CcEEEEEEccC-----------------Cc-EEEEeCCCcEEEEEcCCCc-eeceeeecccccccc------------ee
Q 008510 71 GCVWDAKFLEN-----------------GD-IVTACSDGVTRIWTVHSDK-VADSLELEAYASELS------------QY 119 (563)
Q Consensus 71 ~~V~~v~~~p~-----------------g~-i~sgs~Dg~Irvwd~~~~~-~~~~~~~~~~~~~v~------------~~ 119 (563)
..|.+++|+|+ +. +++|+.|++|++||++... ......+..|...+. ..
T Consensus 151 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~ 230 (316)
T 3bg1_A 151 IGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTST 230 (316)
T ss_dssp SCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCE
T ss_pred CCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCce
Confidence 89999999997 35 9999999999999997542 122233444443332 35
Q ss_pred EEeeccCCceEEEeCCCC-------ce--------eeecccCCCeEEEEecCCCeEEEEEecc-cceEEEeCcE
Q 008510 120 KLCRKKVGGLKLEDLPGL-------EA--------LQIPGTNAGQTKVVREGDNGVAYSWDMK-EQKWDKLGEV 177 (563)
Q Consensus 120 ~~~~~~~~~i~~~d~~~~-------~~--------l~~~g~~dg~~~l~~~~~~~~~~~wd~~-~~~w~~~g~v 177 (563)
.+++..|+.|++|++... .. .....+++|.+.+..+.| +.+.+|+.. .+.|..+..+
T Consensus 231 las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D-~~v~lw~~~~~g~~~~~~~~ 303 (316)
T 3bg1_A 231 IASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGD-NKVTLWKESVDGQWVCISDV 303 (316)
T ss_dssp EEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESS-SCEEEEEECTTSCEEEEEEC
T ss_pred EEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCC-CeEEEEEECCCCcEEEeeec
Confidence 667788999999998652 11 122255666665555554 445678754 4566655443
No 82
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.74 E-value=7.9e-17 Score=169.12 Aligned_cols=220 Identities=10% Similarity=0.068 Sum_probs=150.8
Q ss_pred CCCEEEEEECCCcEEEEcC-C---Cc---eeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc-----CCceeEEEe
Q 008510 2 PGVGIISASHDCTIRLWAL-T---GQ---VLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-----DGVCVQSIE 68 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~---g~---~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd-----~~~~~~~l~ 68 (563)
+|++|++||.||+|++||+ + +. +...+ +|...|.+++|+|++ .+++|+.|++|++|| .++++..+.
T Consensus 75 ~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~ 153 (437)
T 3gre_A 75 ETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLN 153 (437)
T ss_dssp SSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEE
T ss_pred CCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccc
Confidence 5789999999999999998 4 43 23333 599999999999998 999999999999998 344433332
Q ss_pred -------------cCCcEEEEE--EccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccccc--------eeEEeec
Q 008510 69 -------------HPGCVWDAK--FLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELS--------QYKLCRK 124 (563)
Q Consensus 69 -------------h~~~V~~v~--~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~--------~~~~~~~ 124 (563)
+...+.++. +++++. +++|+.||.|++||+++++.........+...+. ...+++.
T Consensus 154 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~ 233 (437)
T 3gre_A 154 CECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGT 233 (437)
T ss_dssp EEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEE
T ss_pred cceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEc
Confidence 334666666 446777 9999999999999999987554333221333333 4456778
Q ss_pred cCCceEEEeCCCCceeeec----------------ccCCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCC---
Q 008510 125 KVGGLKLEDLPGLEALQIP----------------GTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGM--- 185 (563)
Q Consensus 125 ~~~~i~~~d~~~~~~l~~~----------------g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~--- 185 (563)
.++.|++||++....+... .+++|.+.+.. ..++.+.+||...+..... +.++...-.
T Consensus 234 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~-~~dg~i~iwd~~~~~~~~~--~~~~~~~~~~~~ 310 (437)
T 3gre_A 234 TRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGG-SSKTFLTIWNFVKGHCQYA--FINSDEQPSMEH 310 (437)
T ss_dssp TTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEE-STTEEEEEEETTTTEEEEE--EESSSSCCCGGG
T ss_pred CCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEE-cCCCcEEEEEcCCCcEEEE--EEcCCCCCccce
Confidence 8899999999876544321 22344444444 4447788999887754332 222111000
Q ss_pred --------CceeecC--cccCcEEEEEcCCCCeeeeecCCCCCChhHHHHH
Q 008510 186 --------NRPILDG--IQYDYVFDVDIGDGEPTRKLPYNRSDNPYDAADK 226 (563)
Q Consensus 186 --------~~~~~~g--~~~d~v~~vd~~dg~~~~~~~~n~~~~~w~~a~~ 226 (563)
....+.| +. +.|.++.+.++..++++..|+.+++|++...
T Consensus 311 ~~~~~~~l~~~~~~~~~~~-~~v~~l~~~~~~~l~s~~~d~~i~~wd~~~~ 360 (437)
T 3gre_A 311 FLPIEKGLEELNFCGIRSL-NALSTISVSNDKILLTDEATSSIVMFSLNEL 360 (437)
T ss_dssp GSCBCSSGGGCCCCCCCSG-GGGCCEEEETTEEEEEEGGGTEEEEEETTCG
T ss_pred ecccccccccceecccccC-CceEEEEECCceEEEecCCCCeEEEEECCCc
Confidence 0111333 33 5677888877788999999999999998643
No 83
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.74 E-value=6e-17 Score=170.04 Aligned_cols=206 Identities=10% Similarity=0.051 Sum_probs=140.8
Q ss_pred CCCEEEEEECCCcEEEEcC-CCceeEEEec--CCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe--cCCcE
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVLMEMVG--HTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE--HPGCV 73 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~g--H~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~--h~~~V 73 (563)
++.++++|+.|++|++||+ +++++.++.+ |.+.|.+++|+|++ .+++|+.|++|++|| .++++.++. |...|
T Consensus 181 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v 260 (437)
T 3gre_A 181 EKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPI 260 (437)
T ss_dssp SCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEE
T ss_pred CCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCce
Confidence 3789999999999999999 8999999998 89999999999999 999999999999999 788888875 66699
Q ss_pred EEEEEcc----CCc-EEEEeCCCcEEEEEcCCCceeceeeec----------------------c--ccccc-------c
Q 008510 74 WDAKFLE----NGD-IVTACSDGVTRIWTVHSDKVADSLELE----------------------A--YASEL-------S 117 (563)
Q Consensus 74 ~~v~~~p----~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~----------------------~--~~~~v-------~ 117 (563)
.+++|+| ++. +++|+.||.|++||+++++......-. . +...+ .
T Consensus 261 ~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~~ 340 (437)
T 3gre_A 261 THVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVSND 340 (437)
T ss_dssp EEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEETT
T ss_pred EEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEECCc
Confidence 9997765 566 899999999999999988744322210 0 11111 1
Q ss_pred eeEEeeccCCceEEEeCCCCceeeec-ccCCCeEEE---EecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCc
Q 008510 118 QYKLCRKKVGGLKLEDLPGLEALQIP-GTNAGQTKV---VREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGI 193 (563)
Q Consensus 118 ~~~~~~~~~~~i~~~d~~~~~~l~~~-g~~dg~~~l---~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~ 193 (563)
...+++..++.|++||+...+.+... ++......+ ....+....+.. |+.. .........+|
T Consensus 341 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~--------~~~~~~~~~~h 406 (437)
T 3gre_A 341 KILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRK------MKRT--------STHSVDDSLYH 406 (437)
T ss_dssp EEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEE------CC---------------------
T ss_pred eEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEe------cccc--------cccccCccccc
Confidence 45667788899999999877655443 332211111 111111110000 0000 00011223344
Q ss_pred ccCcEEEEEc-CC--CCeeeeecCCCCCChhH
Q 008510 194 QYDYVFDVDI-GD--GEPTRKLPYNRSDNPYD 222 (563)
Q Consensus 194 ~~d~v~~vd~-~d--g~~~~~~~~n~~~~~w~ 222 (563)
. +.|.++.+ ++ +..++++..|+.+++|+
T Consensus 407 ~-~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 407 H-DIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp C-CCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred c-cceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 4 78999999 55 77899999999999984
No 84
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.74 E-value=7.1e-17 Score=171.52 Aligned_cols=149 Identities=15% Similarity=0.099 Sum_probs=112.0
Q ss_pred CCCEEEEEECCCcEEEEcCCCceeEEEecCCC-----cEEEEEEcCCC-eEEEEeCCCcEEEEc--CCc-------eeEE
Q 008510 2 PGVGIISASHDCTIRLWALTGQVLMEMVGHTA-----IVYSIDSHASG-LIVSGSEDRFAKIWK--DGV-------CVQS 66 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~~g~~i~~l~gH~~-----~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~-------~~~~ 66 (563)
+|.++|++++||+|++|+..+ ++..+. |.. .|.+++|+|+| .+++|++||+|+||| ++. .+++
T Consensus 96 dG~~LAs~s~dg~V~iwd~~~-~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~t 173 (588)
T 2j04_A 96 IDDWMAVLSNNGNVSVFKDNK-MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESS 173 (588)
T ss_dssp SSSCEEEEETTSCEEEEETTE-EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEE
T ss_pred CCCEEEEEeCCCcEEEEeCCc-eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeee
Confidence 688999999999999999755 777777 776 49999999999 999999999999999 443 3577
Q ss_pred Ee-----cCCcEEEEEEccCCcEEEEeCCCcEEEEEcCCCceec-eeee-cccccccce------eEEeeccCCceEEEe
Q 008510 67 IE-----HPGCVWDAKFLENGDIVTACSDGVTRIWTVHSDKVAD-SLEL-EAYASELSQ------YKLCRKKVGGLKLED 133 (563)
Q Consensus 67 l~-----h~~~V~~v~~~p~g~i~sgs~Dg~Irvwd~~~~~~~~-~~~~-~~~~~~v~~------~~~~~~~~~~i~~~d 133 (563)
+. |...|.+++|+|+| +++++.|++|++||+.++.... ...+ ..+...|.. ..+++ .++.|++||
T Consensus 174 i~~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFsg~~LASa-~~~tIkLWd 251 (588)
T 2j04_A 174 IRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIVDYKVVLT-CPGYVHKID 251 (588)
T ss_dssp EECSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEETTEEEEE-CSSEEEEEE
T ss_pred eecccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEECCEEEEE-eCCeEEEEE
Confidence 63 66799999999999 9999999999999998876321 1123 234334433 23333 468999999
Q ss_pred CCCCceeeec-ccCCCeEEEEe
Q 008510 134 LPGLEALQIP-GTNAGQTKVVR 154 (563)
Q Consensus 134 ~~~~~~l~~~-g~~dg~~~l~~ 154 (563)
+.+....... ||.+....+..
T Consensus 252 ~~~~~~~~~~~gh~~~V~~va~ 273 (588)
T 2j04_A 252 LKNYSISSLKTGSLENFHIIPL 273 (588)
T ss_dssp TTTTEEEEEECSCCSCCCEEEE
T ss_pred CCCCeEEEEEcCCCceEEEEEe
Confidence 9987763333 55444443333
No 85
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.73 E-value=1.8e-16 Score=157.57 Aligned_cols=199 Identities=15% Similarity=0.230 Sum_probs=145.4
Q ss_pred CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc-----CCceeEEEe-cCCcE
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-----DGVCVQSIE-HPGCV 73 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd-----~~~~~~~l~-h~~~V 73 (563)
+|++|++|+.||+|++||+ ++++...+.+|...|.+++|+|++ .+++++.|+.+++|+ ..+.+..+. |...|
T Consensus 28 ~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i 107 (313)
T 3odt_A 28 DDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNV 107 (313)
T ss_dssp ETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCE
T ss_pred CCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCE
Confidence 4789999999999999999 788889999999999999999999 999999999999999 235566676 88899
Q ss_pred EEEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccc---------cceeEEeeccCCceEEEeCCCCce----
Q 008510 74 WDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASE---------LSQYKLCRKKVGGLKLEDLPGLEA---- 139 (563)
Q Consensus 74 ~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~---------v~~~~~~~~~~~~i~~~d~~~~~~---- 139 (563)
.+++| +++ +++|+.||.|++|| .++.. ..+..+... -....+++..++.+++||......
T Consensus 108 ~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~ 181 (313)
T 3odt_A 108 CSLSF--QDGVVISGSWDKTAKVWK--EGSLV--YNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDKVIKTFSG 181 (313)
T ss_dssp EEEEE--ETTEEEEEETTSEEEEEE--TTEEE--EEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTEEEEEECS
T ss_pred EEEEe--cCCEEEEEeCCCCEEEEc--CCcEE--EecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecCceEEEEec
Confidence 99999 445 99999999999999 33322 122222222 234556777889999999542211
Q ss_pred ------eeecccCCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeeee
Q 008510 140 ------LQIPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRKL 212 (563)
Q Consensus 140 ------l~~~g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~ 212 (563)
.....++++. ++....++.+++||...+.. ...+.++. +.|.++.+ ++| .++..
T Consensus 182 ~~~~~i~~~~~~~~~~--~~~~~~dg~i~i~d~~~~~~---------------~~~~~~~~-~~i~~~~~~~~~-~l~~~ 242 (313)
T 3odt_A 182 IHNDVVRHLAVVDDGH--FISCSNDGLIKLVDMHTGDV---------------LRTYEGHE-SFVYCIKLLPNG-DIVSC 242 (313)
T ss_dssp SCSSCEEEEEEEETTE--EEEEETTSEEEEEETTTCCE---------------EEEEECCS-SCEEEEEECTTS-CEEEE
T ss_pred cCcccEEEEEEcCCCe--EEEccCCCeEEEEECCchhh---------------hhhhhcCC-ceEEEEEEecCC-CEEEE
Confidence 1112344555 33333345677788755421 12344554 67999999 787 59999
Q ss_pred cCCCCCChhHHHH
Q 008510 213 PYNRSDNPYDAAD 225 (563)
Q Consensus 213 ~~n~~~~~w~~a~ 225 (563)
..|+.+.+|++..
T Consensus 243 ~~dg~v~iwd~~~ 255 (313)
T 3odt_A 243 GEDRTVRIWSKEN 255 (313)
T ss_dssp ETTSEEEEECTTT
T ss_pred ecCCEEEEEECCC
Confidence 9999999999753
No 86
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.73 E-value=8e-17 Score=169.38 Aligned_cols=225 Identities=14% Similarity=0.142 Sum_probs=152.2
Q ss_pred CCEEEEEECCCcEEEEcC-C----------CceeEEEecCCCcEEEEEEcCCC--eEEEEeCCCcEEEEc-CC-c----e
Q 008510 3 GVGIISASHDCTIRLWAL-T----------GQVLMEMVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK-DG-V----C 63 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~-~----------g~~i~~l~gH~~~V~~v~~~p~g--~l~s~s~D~tvriWd-~~-~----~ 63 (563)
+.+|++|+.||+|++|++ . ++++.++.+|...|++++|+|++ .+++|+.||+|++|+ .. . .
T Consensus 141 ~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 220 (430)
T 2xyi_A 141 ACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRV 220 (430)
T ss_dssp EEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGE
T ss_pred CcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCce
Confidence 468999999999999999 4 57888999999999999999986 799999999999999 32 1 1
Q ss_pred ---eEEEe-cCCcEEEEEEcc-CCc-EEEEeCCCcEEEEEcCCCce-eceeeecccccccc---------eeEEeeccCC
Q 008510 64 ---VQSIE-HPGCVWDAKFLE-NGD-IVTACSDGVTRIWTVHSDKV-ADSLELEAYASELS---------QYKLCRKKVG 127 (563)
Q Consensus 64 ---~~~l~-h~~~V~~v~~~p-~g~-i~sgs~Dg~Irvwd~~~~~~-~~~~~~~~~~~~v~---------~~~~~~~~~~ 127 (563)
...+. |...|++++|+| ++. +++++.||.|++||++++.. .....+..+...+. ...+++..++
T Consensus 221 ~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg 300 (430)
T 2xyi_A 221 IDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADK 300 (430)
T ss_dssp EECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTS
T ss_pred eccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCC
Confidence 34454 888999999999 455 88999999999999997631 11122233333222 2456778889
Q ss_pred ceEEEeCCCCc-eee-ecccCCCeEEEEecCC----------CeEEEEEecccceEEEeCcEeeCCCCCCCceeecCccc
Q 008510 128 GLKLEDLPGLE-ALQ-IPGTNAGQTKVVREGD----------NGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQY 195 (563)
Q Consensus 128 ~i~~~d~~~~~-~l~-~~g~~dg~~~l~~~~~----------~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~ 195 (563)
.|++||++... .+. ..++......+..+++ ++.+.+|+.....-..... ....+.......+.||.
T Consensus 301 ~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~h~- 378 (430)
T 2xyi_A 301 TVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTE-DAEDGPPELLFIHGGHT- 378 (430)
T ss_dssp EEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHH-HHHHCCTTEEEECCCCS-
T ss_pred eEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCcc-ccccCCcceEEEcCCCC-
Confidence 99999998632 222 2234333333333332 2344556654310000000 00000001223345555
Q ss_pred CcEEEEEc-CCCC-eeeeecCCCCCChhHHHHHHHH
Q 008510 196 DYVFDVDI-GDGE-PTRKLPYNRSDNPYDAADKWLL 229 (563)
Q Consensus 196 d~v~~vd~-~dg~-~~~~~~~n~~~~~w~~a~~f~~ 229 (563)
+.|.++.+ +++. .+++.+.|+.+++|++.+..+.
T Consensus 379 ~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~~~~ 414 (430)
T 2xyi_A 379 AKISDFSWNPNEPWIICSVSEDNIMQVWQMAENVYN 414 (430)
T ss_dssp SCEEEEEECSSSTTEEEEEETTSEEEEEEECHHHHC
T ss_pred CCceEEEECCCCCCEEEEEECCCCEEEeEccccccc
Confidence 77999999 8887 7899999999999999887654
No 87
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.73 E-value=1.3e-16 Score=161.86 Aligned_cols=208 Identities=14% Similarity=0.136 Sum_probs=144.9
Q ss_pred CC-EEEEEEC---CCcEEEEcC-CCceeEE-EecCCCcEEEEEEcCC---C-eEEEEeCCCcEEEEc--CCc-eeEEEe-
Q 008510 3 GV-GIISASH---DCTIRLWAL-TGQVLME-MVGHTAIVYSIDSHAS---G-LIVSGSEDRFAKIWK--DGV-CVQSIE- 68 (563)
Q Consensus 3 g~-~l~s~s~---DgtIrlWd~-~g~~i~~-l~gH~~~V~~v~~~p~---g-~l~s~s~D~tvriWd--~~~-~~~~l~- 68 (563)
|. ++++|+. ||+|++||+ ++++... ..+|...|.+++|+|+ | .+++|+.|++|++|| +++ ++..+.
T Consensus 30 ~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 109 (357)
T 3i2n_A 30 SAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKG 109 (357)
T ss_dssp SSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECC
T ss_pred CceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEe
Confidence 54 4556665 999999999 6665544 3489999999999998 6 899999999999999 555 778887
Q ss_pred cCCcEEEEEE------ccCCc-EEEEeCCCcEEEEEcCCCc-eeceeeeccccc----------------ccceeEEeec
Q 008510 69 HPGCVWDAKF------LENGD-IVTACSDGVTRIWTVHSDK-VADSLELEAYAS----------------ELSQYKLCRK 124 (563)
Q Consensus 69 h~~~V~~v~~------~p~g~-i~sgs~Dg~Irvwd~~~~~-~~~~~~~~~~~~----------------~v~~~~~~~~ 124 (563)
|...|.+++| +|+++ +++|+.||.|++||+++++ ... .+..+.. .-....+++.
T Consensus 110 ~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~ 187 (357)
T 3i2n_A 110 HKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVA--NMEPVQGENKRDCWTVAFGNAYNQEERVVCAGY 187 (357)
T ss_dssp CSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSE--EECCCTTSCCCCEEEEEEECCCC-CCCEEEEEE
T ss_pred cccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcce--eccccCCCCCCceEEEEEEeccCCCCCEEEEEc
Confidence 8899999965 57887 9999999999999999875 222 1111111 1234556677
Q ss_pred cCCceEEEeCCCCceeeecc----------cC---CCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeec
Q 008510 125 KVGGLKLEDLPGLEALQIPG----------TN---AGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILD 191 (563)
Q Consensus 125 ~~~~i~~~d~~~~~~l~~~g----------~~---dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~ 191 (563)
.++.|++||++..+...... ++ ++...+..+.+ +.+++||...+. ....+. ...+.
T Consensus 188 ~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~--~~~~~~--------~~~~~ 256 (357)
T 3i2n_A 188 DNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLE-GKFHVFDMRTQH--PTKGFA--------SVSEK 256 (357)
T ss_dssp TTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEEST-TEEEEEEEEEEE--TTTEEE--------EEEEE
T ss_pred cCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCC-CeEEEEeCcCCC--ccccee--------eeccC
Confidence 88999999998776543333 33 44444444433 445667654331 110000 01123
Q ss_pred CcccCcEEEEEc-CCCC-eeeeecCCCCCChhHHH
Q 008510 192 GIQYDYVFDVDI-GDGE-PTRKLPYNRSDNPYDAA 224 (563)
Q Consensus 192 g~~~d~v~~vd~-~dg~-~~~~~~~n~~~~~w~~a 224 (563)
++. +.|.++.+ ++|. .++....|+.+++|++.
T Consensus 257 ~~~-~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 290 (357)
T 3i2n_A 257 AHK-STVWQVRHLPQNRELFLTAGGAGGLHLWKYE 290 (357)
T ss_dssp CCS-SCEEEEEEETTEEEEEEEEETTSEEEEEEEE
T ss_pred CCc-CCEEEEEECCCCCcEEEEEeCCCcEEEeecC
Confidence 554 67999999 8888 79999999999999974
No 88
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.73 E-value=4.2e-17 Score=169.37 Aligned_cols=207 Identities=13% Similarity=0.187 Sum_probs=148.9
Q ss_pred CCCEEEEEECCCcEEEEcC-C----CceeEEEecCCCcEEEEEEcCC-C-eEEEEeCCCcEEEEc--CCc------eeEE
Q 008510 2 PGVGIISASHDCTIRLWAL-T----GQVLMEMVGHTAIVYSIDSHAS-G-LIVSGSEDRFAKIWK--DGV------CVQS 66 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~----g~~i~~l~gH~~~V~~v~~~p~-g-~l~s~s~D~tvriWd--~~~------~~~~ 66 (563)
+|++|++|+.||+|++|++ . .+++..+.+|...|.+++|+|+ + .+++++.|++|++|| +++ ....
T Consensus 78 ~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~ 157 (416)
T 2pm9_A 78 NNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLT 157 (416)
T ss_dssp SSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBC
T ss_pred CCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccc
Confidence 5788999999999999999 4 2588999999999999999998 6 899999999999999 443 2222
Q ss_pred E---e-cCCcEEEEEEccC-Cc-EEEEeCCCcEEEEEcCCCceeceeeecc----cccccc---------eeEEeeccCC
Q 008510 67 I---E-HPGCVWDAKFLEN-GD-IVTACSDGVTRIWTVHSDKVADSLELEA----YASELS---------QYKLCRKKVG 127 (563)
Q Consensus 67 l---~-h~~~V~~v~~~p~-g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~----~~~~v~---------~~~~~~~~~~ 127 (563)
+ . |...|++++|+|+ +. +++|+.||.|++||+++++......... +...+. ...+++..++
T Consensus 158 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~ 237 (416)
T 2pm9_A 158 PGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSD 237 (416)
T ss_dssp CCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCS
T ss_pred cccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCC
Confidence 2 2 8889999999998 55 8999999999999999987543332210 011111 3455666677
Q ss_pred ---ceEEEeCCCCc-eee-ec-ccC-----------CCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceee
Q 008510 128 ---GLKLEDLPGLE-ALQ-IP-GTN-----------AGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPIL 190 (563)
Q Consensus 128 ---~i~~~d~~~~~-~l~-~~-g~~-----------dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~ 190 (563)
.|++||++... .+. .. ++. ++.+.+..+.+ +.+++||...+.. ...+
T Consensus 238 ~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d-g~v~~wd~~~~~~---------------~~~~ 301 (416)
T 2pm9_A 238 NDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRD-NTVLLWNPESAEQ---------------LSQF 301 (416)
T ss_dssp SSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESS-SEEEEECSSSCCE---------------EEEE
T ss_pred CCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCC-CCEEEeeCCCCcc---------------ceee
Confidence 99999998642 221 12 333 34443333333 4456677554321 2234
Q ss_pred cCcccCcEEEEEc-CCC-CeeeeecCCCCCChhHHHH
Q 008510 191 DGIQYDYVFDVDI-GDG-EPTRKLPYNRSDNPYDAAD 225 (563)
Q Consensus 191 ~g~~~d~v~~vd~-~dg-~~~~~~~~n~~~~~w~~a~ 225 (563)
.+|. +.|.++.+ ++| ..+++...|+.+++|++..
T Consensus 302 ~~~~-~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~ 337 (416)
T 2pm9_A 302 PARG-NWCFKTKFAPEAPDLFACASFDNKIEVQTLQN 337 (416)
T ss_dssp ECSS-SCCCCEEECTTCTTEEEECCSSSEEEEEESCC
T ss_pred cCCC-CceEEEEECCCCCCEEEEEecCCcEEEEEccC
Confidence 4554 67889999 888 7899999999999999853
No 89
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.73 E-value=2.9e-16 Score=163.30 Aligned_cols=202 Identities=10% Similarity=0.073 Sum_probs=149.9
Q ss_pred CCEEEEEECCCcEEEEcC-CCceeEEEec-CCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEEE
Q 008510 3 GVGIISASHDCTIRLWAL-TGQVLMEMVG-HTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDA 76 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~-~g~~i~~l~g-H~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~v 76 (563)
+..+++++.|++|++|++ ++++...+.. |...|.+++|+|++ .+++|+.||.|++|| +++.++.+. |...|.++
T Consensus 103 ~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 182 (401)
T 4aez_A 103 NLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCL 182 (401)
T ss_dssp TTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEE
T ss_pred CCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEE
Confidence 456888999999999999 7888877776 89999999999999 999999999999999 788888887 88999999
Q ss_pred EEccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccccc--------eeEEeeccCCceEEEeCCCCceeeec----
Q 008510 77 KFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELS--------QYKLCRKKVGGLKLEDLPGLEALQIP---- 143 (563)
Q Consensus 77 ~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~--------~~~~~~~~~~~i~~~d~~~~~~l~~~---- 143 (563)
+|+ ++ +++|+.||.|++||++.... ....+..+...+. ...+++..++.|++||+.....+...
T Consensus 183 ~~~--~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~ 259 (401)
T 4aez_A 183 SWN--RHVLSSGSRSGAIHHHDVRIANH-QIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHN 259 (401)
T ss_dssp EEE--TTEEEEEETTSEEEEEETTSSSC-EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCS
T ss_pred EEC--CCEEEEEcCCCCEEEEecccCcc-eeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCc
Confidence 994 45 99999999999999985431 1223333333332 45567778899999999876544322
Q ss_pred -------ccCCCeEEEEecC--CCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeee--
Q 008510 144 -------GTNAGQTKVVREG--DNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRK-- 211 (563)
Q Consensus 144 -------g~~dg~~~l~~~~--~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~-- 211 (563)
.++++...++..+ .++.+++||..++.... .+.. ...|.++.+ ++|..++.
T Consensus 260 ~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~---------------~~~~--~~~v~~~~~s~~~~~l~~~~ 322 (401)
T 4aez_A 260 AAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVN---------------TVDA--GSQVTSLIWSPHSKEIMSTH 322 (401)
T ss_dssp SCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEE---------------EEEC--SSCEEEEEECSSSSEEEEEE
T ss_pred ceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEE---------------EEeC--CCcEEEEEECCCCCeEEEEe
Confidence 3444444444433 35667788876553221 1111 145889999 88988888
Q ss_pred ecCCCCCChhHHH
Q 008510 212 LPYNRSDNPYDAA 224 (563)
Q Consensus 212 ~~~n~~~~~w~~a 224 (563)
+..|+.+.+|+..
T Consensus 323 g~~dg~i~v~~~~ 335 (401)
T 4aez_A 323 GFPDNNLSIWSYS 335 (401)
T ss_dssp CTTTCEEEEEEEE
T ss_pred ecCCCcEEEEecC
Confidence 4478899999874
No 90
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.72 E-value=2e-16 Score=162.99 Aligned_cols=183 Identities=10% Similarity=0.052 Sum_probs=133.4
Q ss_pred CEEEEEECCCcEEEEcC-CCceeEEEe--cCCCcEEEEEEcC-CC-eEEEEeCCCcEEEEc-CCceeEEEe-c---CCcE
Q 008510 4 VGIISASHDCTIRLWAL-TGQVLMEMV--GHTAIVYSIDSHA-SG-LIVSGSEDRFAKIWK-DGVCVQSIE-H---PGCV 73 (563)
Q Consensus 4 ~~l~s~s~DgtIrlWd~-~g~~i~~l~--gH~~~V~~v~~~p-~g-~l~s~s~D~tvriWd-~~~~~~~l~-h---~~~V 73 (563)
++|++|+.||+|++||+ +++....+. +|...|.+++|+| ++ .+++++.|++|++|| .+..+..+. + ...|
T Consensus 87 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v 166 (383)
T 3ei3_B 87 TTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWY 166 (383)
T ss_dssp TEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEEEEEECCCCSSCCE
T ss_pred CEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCceEEEeccCCCCCCe
Confidence 79999999999999999 677766665 7999999999999 56 899999999999999 777777776 3 3689
Q ss_pred EEEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccccceeEEeeccCCceEEEeCCCCceeeecccCCCeEEE
Q 008510 74 WDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLCRKKVGGLKLEDLPGLEALQIPGTNAGQTKV 152 (563)
Q Consensus 74 ~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~d~~~~~~l~~~g~~dg~~~l 152 (563)
++++|+|+++ +++|+.|+.|++||++... . ..+..+. ..+.....++++...+
T Consensus 167 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~--~~~~~h~-----------------------~~v~~~~~~~~~~~~l 220 (383)
T 3ei3_B 167 CCVDVSVSRQMLATGDSTGRLLLLGLDGHE-I--FKEKLHK-----------------------AKVTHAEFNPRCDWLM 220 (383)
T ss_dssp EEEEEETTTTEEEEEETTSEEEEEETTSCE-E--EEEECSS-----------------------SCEEEEEECSSCTTEE
T ss_pred EEEEECCCCCEEEEECCCCCEEEEECCCCE-E--EEeccCC-----------------------CcEEEEEECCCCCCEE
Confidence 9999999999 9999999999999995322 1 1122221 2223333556666333
Q ss_pred EecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-C-CCCeeeeecCCCCCChhHHHH
Q 008510 153 VREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-G-DGEPTRKLPYNRSDNPYDAAD 225 (563)
Q Consensus 153 ~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~-dg~~~~~~~~n~~~~~w~~a~ 225 (563)
+....++.+.+||.....- .+... ..+ ++. +.|.++.+ + +|..++....|+.+.+|++..
T Consensus 221 ~s~~~d~~i~iwd~~~~~~--~~~~~---------~~~-~~~-~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~ 282 (383)
T 3ei3_B 221 ATSSVDATVKLWDLRNIKD--KNSYI---------AEM-PHE-KPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYD 282 (383)
T ss_dssp EEEETTSEEEEEEGGGCCS--TTCEE---------EEE-ECS-SCEEEEEECTTTSCEEEEEESSSEEEEEETTB
T ss_pred EEEeCCCEEEEEeCCCCCc--ccceE---------EEe-cCC-CceEEEEEcCCCCCEEEEEcCCCcEEEEECCC
Confidence 3333346677888765210 00111 112 333 67999999 7 999999999999999999753
No 91
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.72 E-value=2.8e-16 Score=158.61 Aligned_cols=197 Identities=9% Similarity=0.066 Sum_probs=146.4
Q ss_pred CCC-EEEEEECCCcEEEEcC-CCceeEEEec--CCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--C---------CceeE
Q 008510 2 PGV-GIISASHDCTIRLWAL-TGQVLMEMVG--HTAIVYSIDSHASG-LIVSGSEDRFAKIWK--D---------GVCVQ 65 (563)
Q Consensus 2 ~g~-~l~s~s~DgtIrlWd~-~g~~i~~l~g--H~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~---------~~~~~ 65 (563)
+|+ +|++|+.||+|++||+ .......+.+ |...|.+++|+| + .+++++.|++|++|| + ++++.
T Consensus 67 ~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 145 (342)
T 1yfq_A 67 NTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSN 145 (342)
T ss_dssp SSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSS
T ss_pred CCCcEEEEEcCCCeEEEEEeccCCceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeee
Confidence 467 8999999999999999 8777788999 999999999999 7 999999999999999 5 66777
Q ss_pred EEecCCcEEEEEEccCCcEEEEeCCCcEEEEEcCC-Cceeceeeecccc-------cc--cceeEEeeccCCceEEEeCC
Q 008510 66 SIEHPGCVWDAKFLENGDIVTACSDGVTRIWTVHS-DKVADSLELEAYA-------SE--LSQYKLCRKKVGGLKLEDLP 135 (563)
Q Consensus 66 ~l~h~~~V~~v~~~p~g~i~sgs~Dg~Irvwd~~~-~~~~~~~~~~~~~-------~~--v~~~~~~~~~~~~i~~~d~~ 135 (563)
++.|+..|++++|+|++ +++++.|+.|++||+++ +..........+. -. -....+++..++.+++|++.
T Consensus 146 ~~~~~~~v~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~ 224 (342)
T 1yfq_A 146 NTKVKNKIFTMDTNSSR-LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFD 224 (342)
T ss_dssp SSSSCCCEEEEEECSSE-EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECC
T ss_pred EEeeCCceEEEEecCCc-EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEc
Confidence 77788999999999988 99999999999999998 5422111111111 11 23456677788999999987
Q ss_pred CC------ce--------------------eeecccCCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCcee
Q 008510 136 GL------EA--------------------LQIPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPI 189 (563)
Q Consensus 136 ~~------~~--------------------l~~~g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~ 189 (563)
.. .. .....+++|.+.+..+.+ +.+++||..++... ..
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-g~i~vwd~~~~~~~---------------~~ 288 (342)
T 1yfq_A 225 DQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSD-GIISCWNLQTRKKI---------------KN 288 (342)
T ss_dssp TTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETT-SCEEEEETTTTEEE---------------EE
T ss_pred CCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCC-ceEEEEcCccHhHh---------------hh
Confidence 65 11 112244555555544444 45667887655322 12
Q ss_pred ecCcccCcEEEEEcCCCCeeeeecCCCC
Q 008510 190 LDGIQYDYVFDVDIGDGEPTRKLPYNRS 217 (563)
Q Consensus 190 ~~g~~~d~v~~vd~~dg~~~~~~~~n~~ 217 (563)
+.+++.+.|.++. ++|..++..+.|+.
T Consensus 289 ~~~~h~~~v~~~~-~~~~~l~s~s~Dg~ 315 (342)
T 1yfq_A 289 FAKFNEDSVVKIA-CSDNILCLATSDDT 315 (342)
T ss_dssp CCCCSSSEEEEEE-ECSSEEEEEEECTH
T ss_pred hhcccCCCceEec-CCCCeEEEEecCCc
Confidence 4455236788888 99999999999884
No 92
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.72 E-value=5.9e-16 Score=157.41 Aligned_cols=166 Identities=11% Similarity=0.091 Sum_probs=122.3
Q ss_pred EEEEECCCcEEEEcCC----------CceeEEEe-cCCCcEEEEEEcC--CC-eEEEEeCCCcEEEEc--CCceeEEEe-
Q 008510 6 IISASHDCTIRLWALT----------GQVLMEMV-GHTAIVYSIDSHA--SG-LIVSGSEDRFAKIWK--DGVCVQSIE- 68 (563)
Q Consensus 6 l~s~s~DgtIrlWd~~----------g~~i~~l~-gH~~~V~~v~~~p--~g-~l~s~s~D~tvriWd--~~~~~~~l~- 68 (563)
+++||.|++|++|+.. ++.+..+. +|.+.|.+++|+| ++ .+++|+.|++|++|| ++++++...
T Consensus 88 ~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~ 167 (343)
T 3lrv_A 88 IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSA 167 (343)
T ss_dssp EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECC
T ss_pred eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEec
Confidence 8999999999999663 33344544 7889999999999 88 999999999999999 777776664
Q ss_pred -cCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeecc-ccccccee--------EEeeccCCceEEEeCCCC
Q 008510 69 -HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEA-YASELSQY--------KLCRKKVGGLKLEDLPGL 137 (563)
Q Consensus 69 -h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~-~~~~v~~~--------~~~~~~~~~i~~~d~~~~ 137 (563)
|...|.+++|+|+|. +++|+.||.|++||+++++... ..+.. |...+... .+++. ++.|++||++..
T Consensus 168 ~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~-~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~ 245 (343)
T 3lrv_A 168 KSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQAS-SRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKD 245 (343)
T ss_dssp CSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCC-EECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSS
T ss_pred CCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCc-cEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCC
Confidence 555899999999999 8999999999999999987431 12233 44444332 23344 569999999876
Q ss_pred ceee----------------ecccCCCeEEEEecCCCeEEEEEec--ccceEEE
Q 008510 138 EALQ----------------IPGTNAGQTKVVREGDNGVAYSWDM--KEQKWDK 173 (563)
Q Consensus 138 ~~l~----------------~~g~~dg~~~l~~~~~~~~~~~wd~--~~~~w~~ 173 (563)
..+. ...+++|.+.+..+.++..+.+|+. ....|..
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~ 299 (343)
T 3lrv_A 246 VGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK 299 (343)
T ss_dssp TTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE
T ss_pred CcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe
Confidence 4421 3356788888876663355666765 4556775
No 93
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.72 E-value=5e-17 Score=168.83 Aligned_cols=206 Identities=14% Similarity=0.195 Sum_probs=146.7
Q ss_pred CC-EEEEE----------ECCCcEEEEcC-CCc---eeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc-CC----
Q 008510 3 GV-GIISA----------SHDCTIRLWAL-TGQ---VLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-DG---- 61 (563)
Q Consensus 3 g~-~l~s~----------s~DgtIrlWd~-~g~---~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd-~~---- 61 (563)
|+ ++++| +.|++|++|++ +++ ++..+ +|...|.+++|+|++ .+++|+.|++|++|+ ..
T Consensus 24 g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~ 102 (416)
T 2pm9_A 24 KIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNA 102 (416)
T ss_dssp SSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSC
T ss_pred CCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCCeEEEeeccccccc
Confidence 44 88888 89999999999 554 44444 689999999999999 999999999999999 32
Q ss_pred -ceeEEEe-cCCcEEEEEEccC-Cc-EEEEeCCCcEEEEEcCCCc------eec-eeeeccccccc---------ceeEE
Q 008510 62 -VCVQSIE-HPGCVWDAKFLEN-GD-IVTACSDGVTRIWTVHSDK------VAD-SLELEAYASEL---------SQYKL 121 (563)
Q Consensus 62 -~~~~~l~-h~~~V~~v~~~p~-g~-i~sgs~Dg~Irvwd~~~~~------~~~-~~~~~~~~~~v---------~~~~~ 121 (563)
+++..+. |...|++++|+|+ +. +++|+.||.|++||+++++ ... ......+...+ ....+
T Consensus 103 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 182 (416)
T 2pm9_A 103 INSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFA 182 (416)
T ss_dssp CCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEE
T ss_pred ccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEE
Confidence 4677777 8899999999998 66 9999999999999998875 111 11112233222 24556
Q ss_pred eeccCCceEEEeCCCCceeeec-cc------CCCeEEEEecCCC----------e---EEEEEecccceEEEeCcEeeCC
Q 008510 122 CRKKVGGLKLEDLPGLEALQIP-GT------NAGQTKVVREGDN----------G---VAYSWDMKEQKWDKLGEVVDGP 181 (563)
Q Consensus 122 ~~~~~~~i~~~d~~~~~~l~~~-g~------~dg~~~l~~~~~~----------~---~~~~wd~~~~~w~~~g~v~~~~ 181 (563)
++..++.|++||+...+.+... .+ ......+..++++ + .+++||...+
T Consensus 183 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~------------ 250 (416)
T 2pm9_A 183 SAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNA------------ 250 (416)
T ss_dssp EESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTST------------
T ss_pred EEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCC------------
Confidence 6778899999999876554433 21 2333333333332 1 3334443221
Q ss_pred CCCCCceeec-CcccCcEEEEEc-C-CCCeeeeecCCCCCChhHHH
Q 008510 182 DDGMNRPILD-GIQYDYVFDVDI-G-DGEPTRKLPYNRSDNPYDAA 224 (563)
Q Consensus 182 ~~~~~~~~~~-g~~~d~v~~vd~-~-dg~~~~~~~~n~~~~~w~~a 224 (563)
......+. +|. ..|.++.+ + ++..++....|+.+++|++.
T Consensus 251 --~~~~~~~~~~~~-~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~ 293 (416)
T 2pm9_A 251 --NTPLQTLNQGHQ-KGILSLDWCHQDEHLLLSSGRDNTVLLWNPE 293 (416)
T ss_dssp --TSCSBCCCSCCS-SCEEEEEECSSCSSCEEEEESSSEEEEECSS
T ss_pred --CCCcEEeecCcc-CceeEEEeCCCCCCeEEEEeCCCCEEEeeCC
Confidence 01223455 565 67999999 6 89999999999999999974
No 94
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.72 E-value=3.5e-16 Score=164.87 Aligned_cols=201 Identities=23% Similarity=0.360 Sum_probs=149.7
Q ss_pred CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCCeEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEEEE
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDAK 77 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~v~ 77 (563)
+|+++++|+.||+|++||+ +++++.++.+|.+.|.+++|+++ .+++|+.|++|++|| +++++.++. |...|.+++
T Consensus 128 ~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~ 206 (445)
T 2ovr_B 128 CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN-IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMH 206 (445)
T ss_dssp ETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEE
T ss_pred cCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEecCC-EEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEE
Confidence 5789999999999999999 89999999999999999999843 899999999999999 788888888 888999999
Q ss_pred EccCCcEEEEeCCCcEEEEEcCCCceeceeeeccccccc------ceeEEeeccCCceEEEeCCCCceeeec-ccCC---
Q 008510 78 FLENGDIVTACSDGVTRIWTVHSDKVADSLELEAYASEL------SQYKLCRKKVGGLKLEDLPGLEALQIP-GTNA--- 147 (563)
Q Consensus 78 ~~p~g~i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v------~~~~~~~~~~~~i~~~d~~~~~~l~~~-g~~d--- 147 (563)
+++ ..+++|+.||.|++||+++++... .+..+...+ ....+++..++.|++||+...+.+... ++..
T Consensus 207 ~~~-~~l~s~s~dg~i~~wd~~~~~~~~--~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~ 283 (445)
T 2ovr_B 207 LHE-KRVVSGSRDATLRVWDIETGQCLH--VLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVY 283 (445)
T ss_dssp EET-TEEEEEETTSEEEEEESSSCCEEE--EEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEE
T ss_pred ecC-CEEEEEeCCCEEEEEECCCCcEEE--EEcCCcccEEEEEECCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceE
Confidence 953 239999999999999999887443 223333332 244567788999999999876655433 4433
Q ss_pred -----CeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEcCCCCeeeeecCCCCCChhH
Q 008510 148 -----GQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDIGDGEPTRKLPYNRSDNPYD 222 (563)
Q Consensus 148 -----g~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~~dg~~~~~~~~n~~~~~w~ 222 (563)
|...+..+.+ +.+.+||..++... ..+.++. ..+..+.+ ++..++.+..|+.+.+|+
T Consensus 284 ~~~~~~~~l~~~~~d-~~i~i~d~~~~~~~---------------~~~~~~~-~~v~~~~~-~~~~l~~~~~dg~i~vwd 345 (445)
T 2ovr_B 284 SLQFDGIHVVSGSLD-TSIRVWDVETGNCI---------------HTLTGHQ-SLTSGMEL-KDNILVSGNADSTVKIWD 345 (445)
T ss_dssp EEEECSSEEEEEETT-SCEEEEETTTCCEE---------------EEECCCC-SCEEEEEE-ETTEEEEEETTSCEEEEE
T ss_pred EEEECCCEEEEEeCC-CeEEEEECCCCCEE---------------EEEcCCc-ccEEEEEE-eCCEEEEEeCCCeEEEEE
Confidence 3333333333 44567776554321 1234443 45666665 455788888888899998
Q ss_pred HH
Q 008510 223 AA 224 (563)
Q Consensus 223 ~a 224 (563)
+.
T Consensus 346 ~~ 347 (445)
T 2ovr_B 346 IK 347 (445)
T ss_dssp TT
T ss_pred CC
Confidence 74
No 95
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.71 E-value=2.2e-16 Score=163.06 Aligned_cols=217 Identities=15% Similarity=0.142 Sum_probs=151.0
Q ss_pred CEEEEEECCCcEEEEcC-CCce-----eEEEecC-----CCcEEEEEEc----CCC-e-EEEEeCCCcEEEEc--C----
Q 008510 4 VGIISASHDCTIRLWAL-TGQV-----LMEMVGH-----TAIVYSIDSH----ASG-L-IVSGSEDRFAKIWK--D---- 60 (563)
Q Consensus 4 ~~l~s~s~DgtIrlWd~-~g~~-----i~~l~gH-----~~~V~~v~~~----p~g-~-l~s~s~D~tvriWd--~---- 60 (563)
++|++|+.||+|++|++ ++++ +..+.+| ...|.+++|+ |++ . +++++.|+.|++|| .
T Consensus 82 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 161 (397)
T 1sq9_A 82 CLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADE 161 (397)
T ss_dssp EEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSH
T ss_pred cEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccc
Confidence 89999999999999999 6676 8899999 5999999999 998 8 99999999999999 5
Q ss_pred --CceeE-----EE-------e-cCCcEEEEEEccCCcEEEEeCCCcEEEEEcCCCceeceeee-ccc---cccc-----
Q 008510 61 --GVCVQ-----SI-------E-HPGCVWDAKFLENGDIVTACSDGVTRIWTVHSDKVADSLEL-EAY---ASEL----- 116 (563)
Q Consensus 61 --~~~~~-----~l-------~-h~~~V~~v~~~p~g~i~sgs~Dg~Irvwd~~~~~~~~~~~~-~~~---~~~v----- 116 (563)
++++. .+ . |...|++++|+|++.+++|+.||.|++||+++++....... ..+ ...+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~ 241 (397)
T 1sq9_A 162 SNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKF 241 (397)
T ss_dssp HHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEE
T ss_pred cccceeeccCcceeeeeeccccCCCCCceEEEECCCceEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEE
Confidence 56665 55 3 67899999999988778999999999999998875433222 003 2222
Q ss_pred ---ceeEEeeccC---CceEEEeCCCCceeeec------------------------ccCCCeEEEEecCCCeEEEEEec
Q 008510 117 ---SQYKLCRKKV---GGLKLEDLPGLEALQIP------------------------GTNAGQTKVVREGDNGVAYSWDM 166 (563)
Q Consensus 117 ---~~~~~~~~~~---~~i~~~d~~~~~~l~~~------------------------g~~dg~~~l~~~~~~~~~~~wd~ 166 (563)
....+++..+ +.|++||+.....+... .+++|.+.+..+.+ +.+++||.
T Consensus 242 ~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g~i~iwd~ 320 (397)
T 1sq9_A 242 SPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWD-GKLRFWDV 320 (397)
T ss_dssp CSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETT-SEEEEEET
T ss_pred CCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCC-CeEEEEEc
Confidence 2445566777 89999999766544322 33445544444433 56678887
Q ss_pred ccceEEEeCcEe------eCCCC--CCCceeecCcccCcEEEEEc-CCC----------CeeeeecCCCCCChhHHH
Q 008510 167 KEQKWDKLGEVV------DGPDD--GMNRPILDGIQYDYVFDVDI-GDG----------EPTRKLPYNRSDNPYDAA 224 (563)
Q Consensus 167 ~~~~w~~~g~v~------~~~~~--~~~~~~~~g~~~d~v~~vd~-~dg----------~~~~~~~~n~~~~~w~~a 224 (563)
..+.... .+. .+..+ ........+|. +.|.++.+ ++| ..+++...|+.+.+|+++
T Consensus 321 ~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 394 (397)
T 1sq9_A 321 KTKERIT--TLNMHCDDIEIEEDILAVDEHGDSLAE-PGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREA 394 (397)
T ss_dssp TTTEEEE--EEECCGGGCSSGGGCCCBCTTSCBCSS-CCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEE
T ss_pred CCCceeE--EEecccCcccchhhhhccccccccccC-CceeEEEeccccccccccccccceEEEecCCCcEEEEEcC
Confidence 6654322 222 10000 00011112223 67999999 887 689999999999999874
No 96
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.71 E-value=7.3e-17 Score=164.02 Aligned_cols=219 Identities=11% Similarity=0.120 Sum_probs=149.9
Q ss_pred CEEEEEECCCcEEEEcC-CCceeEEEec-----CCCcEEEEEEcCC----C-eEEEEeCCCcEEEEc--CCceeEEEe-c
Q 008510 4 VGIISASHDCTIRLWAL-TGQVLMEMVG-----HTAIVYSIDSHAS----G-LIVSGSEDRFAKIWK--DGVCVQSIE-H 69 (563)
Q Consensus 4 ~~l~s~s~DgtIrlWd~-~g~~i~~l~g-----H~~~V~~v~~~p~----g-~l~s~s~D~tvriWd--~~~~~~~l~-h 69 (563)
..+++++.|+.|++||+ +++.+..+.+ |...|++++|+|+ | .+++|+.|++|++|| +++++..+. |
T Consensus 35 ~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~ 114 (366)
T 3k26_A 35 PLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGH 114 (366)
T ss_dssp CEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESC
T ss_pred ceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCC
Confidence 44666666779999999 6777777764 5578999999998 6 899999999999999 788888888 9
Q ss_pred CCcEEEEEEcc-CCc-EEEEeCCCcEEEEEcCCCceeceee-ecccccccc--------eeEEeeccCCceEEEeCCCCc
Q 008510 70 PGCVWDAKFLE-NGD-IVTACSDGVTRIWTVHSDKVADSLE-LEAYASELS--------QYKLCRKKVGGLKLEDLPGLE 138 (563)
Q Consensus 70 ~~~V~~v~~~p-~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~-~~~~~~~v~--------~~~~~~~~~~~i~~~d~~~~~ 138 (563)
...|.+++|+| ++. +++|+.||.|++||+++++...... +..+...+. ...+++..++.|++||+...+
T Consensus 115 ~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 194 (366)
T 3k26_A 115 GNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKR 194 (366)
T ss_dssp CSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHH
T ss_pred CCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCc
Confidence 99999999999 787 9999999999999999887443221 123333332 355677788999999998654
Q ss_pred eeeec-----------------------------ccCC--------CeEEEEecCCCeEEEEEecccceEEEeCcEeeCC
Q 008510 139 ALQIP-----------------------------GTNA--------GQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGP 181 (563)
Q Consensus 139 ~l~~~-----------------------------g~~d--------g~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~ 181 (563)
..... ++.. |...+.. ..++.+.+|+...+.-. ........
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~-~~d~~i~~wd~~~~~~~-~~~~~~~~ 272 (366)
T 3k26_A 195 MMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLGDLILSK-SCENAIVCWKPGKMEDD-IDKIKPSE 272 (366)
T ss_dssp HHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEETTEEEEE-CSSSEEEEEEESSTTCC-GGGCCTTC
T ss_pred cccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEcCCEEEEE-ecCCEEEEEeCCCcccc-ccccccCC
Confidence 32111 1222 3333333 33466677886543210 00000000
Q ss_pred CCCCCceeecCcccCcEEEEEc-CC--CCeeeeecCCCCCChhHHHH
Q 008510 182 DDGMNRPILDGIQYDYVFDVDI-GD--GEPTRKLPYNRSDNPYDAAD 225 (563)
Q Consensus 182 ~~~~~~~~~~g~~~d~v~~vd~-~d--g~~~~~~~~n~~~~~w~~a~ 225 (563)
........+.++. ..|..+.+ ++ |..++.+..|+.+.+|++..
T Consensus 273 ~~~~~~~~~~~~~-~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~ 318 (366)
T 3k26_A 273 SNVTILGRFDYSQ-CDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEV 318 (366)
T ss_dssp CCEEEEEEEECSS-CCSSCCCCEECTTSSEEEEECTTSCEEEEECCS
T ss_pred cchheeccccccC-CcEEEEEEcCCCCCcEEEEEecCCcEEEEECCC
Confidence 0000122344554 55777778 67 99999999999999999753
No 97
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.71 E-value=3.7e-16 Score=157.40 Aligned_cols=138 Identities=24% Similarity=0.368 Sum_probs=109.9
Q ss_pred CCCEEEEEECCCcEEEEcCCC--ceeEEEecCCCcEEEEEEcCCC---eEEEEeCCCcEEEEc--CCceeEEEe-cCCcE
Q 008510 2 PGVGIISASHDCTIRLWALTG--QVLMEMVGHTAIVYSIDSHASG---LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCV 73 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~~g--~~i~~l~gH~~~V~~v~~~p~g---~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V 73 (563)
++..|++|+.|+.+++||..+ .....+.+|...|.+++|++++ .+++++.|++|++|| +++++..+. |.+.|
T Consensus 139 ~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v 218 (340)
T 4aow_A 139 DNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYL 218 (340)
T ss_dssp TSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCE
T ss_pred cCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcE
Confidence 467899999999999999933 3445567899999999999875 689999999999999 777888887 99999
Q ss_pred EEEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeec----ccccccceeEEeeccCCceEEEeCCCCce
Q 008510 74 WDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELE----AYASELSQYKLCRKKVGGLKLEDLPGLEA 139 (563)
Q Consensus 74 ~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~i~~~d~~~~~~ 139 (563)
.+++|+|+|+ +++|+.||.|++||+++.+........ ..........+++..++.|++||+++...
T Consensus 219 ~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~ 289 (340)
T 4aow_A 219 NTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKII 289 (340)
T ss_dssp EEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEE
T ss_pred EEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEeeecCCCCceeeccCCCEEEEEECCCCeE
Confidence 9999999999 999999999999999998754332211 11111234556677889999999976543
No 98
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.71 E-value=1.2e-15 Score=160.70 Aligned_cols=201 Identities=19% Similarity=0.347 Sum_probs=151.2
Q ss_pred CCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCCeEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEEEEE
Q 008510 3 GVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDAKF 78 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~v~~ 78 (563)
++.+++|+.||+|++||+ +++++.++.+|...|.+++++++ .+++|+.|++|++|| +++++..+. |...|.++++
T Consensus 169 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~-~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~ 247 (445)
T 2ovr_B 169 DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEK-RVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY 247 (445)
T ss_dssp TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETT-EEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE
T ss_pred CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEecCC-EEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE
Confidence 678999999999999999 89999999999999999999644 899999999999999 788888887 8889999999
Q ss_pred ccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccccc------eeEEeeccCCceEEEeCCCCceeeec-ccCC---
Q 008510 79 LENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELS------QYKLCRKKVGGLKLEDLPGLEALQIP-GTNA--- 147 (563)
Q Consensus 79 ~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~------~~~~~~~~~~~i~~~d~~~~~~l~~~-g~~d--- 147 (563)
+|. +++|+.||.|++||+++++... .+..+...+. ...+++..++.|++||+...+.+... ++..
T Consensus 248 --~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~ 323 (445)
T 2ovr_B 248 --DGRRVVSGAYDFMVKVWDPETETCLH--TLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTS 323 (445)
T ss_dssp --CSSCEEEEETTSCEEEEEGGGTEEEE--EECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEE
T ss_pred --CCCEEEEEcCCCEEEEEECCCCcEeE--EecCCCCceEEEEECCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEE
Confidence 566 9999999999999999887443 2233333332 34567788999999999887665443 3332
Q ss_pred -----CeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecC--cccCcEEEEEcCCCCeeeeecCCCCCCh
Q 008510 148 -----GQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDG--IQYDYVFDVDIGDGEPTRKLPYNRSDNP 220 (563)
Q Consensus 148 -----g~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g--~~~d~v~~vd~~dg~~~~~~~~n~~~~~ 220 (563)
+...+..+. ++.+++||...+... ..+.+ .+...|.++.+ ++..++.+..|+.+++
T Consensus 324 ~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~---------------~~~~~~~~~~~~v~~~~~-~~~~l~s~~~dg~v~i 386 (445)
T 2ovr_B 324 GMELKDNILVSGNA-DSTVKIWDIKTGQCL---------------QTLQGPNKHQSAVTCLQF-NKNFVITSSDDGTVKL 386 (445)
T ss_dssp EEEEETTEEEEEET-TSCEEEEETTTCCEE---------------EEECSTTSCSSCEEEEEE-CSSEEEEEETTSEEEE
T ss_pred EEEEeCCEEEEEeC-CCeEEEEECCCCcEE---------------EEEccCCCCCCCEEEEEE-CCCEEEEEeCCCeEEE
Confidence 223333333 345667776554321 11222 12356888888 4678999999999999
Q ss_pred hHHHH
Q 008510 221 YDAAD 225 (563)
Q Consensus 221 w~~a~ 225 (563)
|++..
T Consensus 387 wd~~~ 391 (445)
T 2ovr_B 387 WDLKT 391 (445)
T ss_dssp EETTT
T ss_pred EECCC
Confidence 99753
No 99
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.71 E-value=3.1e-16 Score=180.05 Aligned_cols=133 Identities=12% Similarity=0.146 Sum_probs=104.3
Q ss_pred CCCEEEEEECCCcEEEEcC-CCcee--EEE----e-----cCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CC-----
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVL--MEM----V-----GHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DG----- 61 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i--~~l----~-----gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~----- 61 (563)
+|++|+|||.|++||+||+ ++... ..+ . +|...|++|+|+|+| .||+|+.|++|+||+ ++
T Consensus 446 dg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~ 525 (902)
T 2oaj_A 446 YGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSV 525 (902)
T ss_dssp EEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---
T ss_pred cCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCc
Confidence 3679999999999999999 55321 112 1 899999999999999 999999999999999 33
Q ss_pred ----------------------------------------ceeEEEe-cCCcEEEEEEccCCcEEEEeCCCcEEEEEcCC
Q 008510 62 ----------------------------------------VCVQSIE-HPGCVWDAKFLENGDIVTACSDGVTRIWTVHS 100 (563)
Q Consensus 62 ----------------------------------------~~~~~l~-h~~~V~~v~~~p~g~i~sgs~Dg~Irvwd~~~ 100 (563)
+++.++. |.+.|++|+|+|+|.+|+|+.|++|++||+++
T Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG~lAsgs~D~tv~lwd~~~ 605 (902)
T 2oaj_A 526 ENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIGFVGIAYAAGSLMLIDRRG 605 (902)
T ss_dssp ------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTSEEEEEETTSEEEEEETTT
T ss_pred cccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCcEEEEEeCCCcEEEEECCC
Confidence 2466777 99999999999999889999999999999988
Q ss_pred Cceeceeeec----ccccccc----------------eeEEeeccCCceEEEeC
Q 008510 101 DKVADSLELE----AYASELS----------------QYKLCRKKVGGLKLEDL 134 (563)
Q Consensus 101 ~~~~~~~~~~----~~~~~v~----------------~~~~~~~~~~~i~~~d~ 134 (563)
+.......+. .|...|. ...+++..|++|++||+
T Consensus 606 ~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~ 659 (902)
T 2oaj_A 606 PAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKI 659 (902)
T ss_dssp TEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEE
T ss_pred CeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEE
Confidence 7654322222 2322232 34556778899999998
No 100
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.71 E-value=6.1e-16 Score=159.62 Aligned_cols=206 Identities=14% Similarity=0.129 Sum_probs=147.3
Q ss_pred CEEEEEECCCcEEEEcC-CCc------eeEEEecCCCcEEEEEEcCC----C----eEEEEeCCCcEEEEc--CCce---
Q 008510 4 VGIISASHDCTIRLWAL-TGQ------VLMEMVGHTAIVYSIDSHAS----G----LIVSGSEDRFAKIWK--DGVC--- 63 (563)
Q Consensus 4 ~~l~s~s~DgtIrlWd~-~g~------~i~~l~gH~~~V~~v~~~p~----g----~l~s~s~D~tvriWd--~~~~--- 63 (563)
++|++|+.||+|++|++ +++ ++..+.+|...|++++|+|+ | .+++++.|++|++|+ +++.
T Consensus 27 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~ 106 (397)
T 1sq9_A 27 SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKK 106 (397)
T ss_dssp SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCC
T ss_pred CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCccccc
Confidence 68999999999999999 666 78999999999999999998 5 699999999999999 5565
Q ss_pred --eEEEe-c-----CCcEEEEEEc----cCCc--EEEEeCCCcEEEEEcCC------Cceec-----eeee-----cccc
Q 008510 64 --VQSIE-H-----PGCVWDAKFL----ENGD--IVTACSDGVTRIWTVHS------DKVAD-----SLEL-----EAYA 113 (563)
Q Consensus 64 --~~~l~-h-----~~~V~~v~~~----p~g~--i~sgs~Dg~Irvwd~~~------~~~~~-----~~~~-----~~~~ 113 (563)
+..+. | ...|++++|+ |++. +++|+.||.|++||+++ ++... .... ..+.
T Consensus 107 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (397)
T 1sq9_A 107 VIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPS 186 (397)
T ss_dssp EEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSC
T ss_pred ccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCC
Confidence 77777 7 4799999999 9886 78999999999999988 44332 1110 1122
Q ss_pred ccc-------ceeEEeeccCCceEEEeCCCCceeeec-c---c---CCCeEEEEecCCC------------eEEEEEecc
Q 008510 114 SEL-------SQYKLCRKKVGGLKLEDLPGLEALQIP-G---T---NAGQTKVVREGDN------------GVAYSWDMK 167 (563)
Q Consensus 114 ~~v-------~~~~~~~~~~~~i~~~d~~~~~~l~~~-g---~---~dg~~~l~~~~~~------------~~~~~wd~~ 167 (563)
..+ ....+++..++.|++||++....+... + + ......+..++++ +.+++||..
T Consensus 187 ~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~ 266 (397)
T 1sq9_A 187 QFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETE 266 (397)
T ss_dssp CCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETT
T ss_pred CCceEEEECCCceEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECC
Confidence 211 125567788899999999866554333 3 3 3333333333222 445666654
Q ss_pred cceEEEeCcEeeCCCCCCCceeecC-------------cccCcEEEEEc-CCCCeeeeecCCCCCChhHHHH
Q 008510 168 EQKWDKLGEVVDGPDDGMNRPILDG-------------IQYDYVFDVDI-GDGEPTRKLPYNRSDNPYDAAD 225 (563)
Q Consensus 168 ~~~w~~~g~v~~~~~~~~~~~~~~g-------------~~~d~v~~vd~-~dg~~~~~~~~n~~~~~w~~a~ 225 (563)
.+... ..+.+ +. +.|.++.+ ++|..++....|+.+.+|++..
T Consensus 267 ~~~~~---------------~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 322 (397)
T 1sq9_A 267 FGERI---------------GSLSVPTHSSQASLGEFAHS-SWVMSLSFNDSGETLCSAGWDGKLRFWDVKT 322 (397)
T ss_dssp TCCEE---------------EEECBC--------CCBSBS-SCEEEEEECSSSSEEEEEETTSEEEEEETTT
T ss_pred CCccc---------------ceeccCcccccccccccccC-CcEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence 43211 12333 33 67999999 8999999999999999999853
No 101
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.70 E-value=9.7e-16 Score=156.47 Aligned_cols=176 Identities=22% Similarity=0.291 Sum_probs=131.5
Q ss_pred CCEEEEEECCCcEEEEcC-CCc--eeEEEecCCCcEEEEEEcCC--C-eEEEEeCCCcEEEEc--CC--ceeEEEe-cCC
Q 008510 3 GVGIISASHDCTIRLWAL-TGQ--VLMEMVGHTAIVYSIDSHAS--G-LIVSGSEDRFAKIWK--DG--VCVQSIE-HPG 71 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~-~g~--~i~~l~gH~~~V~~v~~~p~--g-~l~s~s~D~tvriWd--~~--~~~~~l~-h~~ 71 (563)
+++|++|+.||+|++||+ +++ .+..+.+|...|.+++|+|+ + .+++++.|++|++|| .+ .....+. |..
T Consensus 69 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~ 148 (379)
T 3jrp_A 69 GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAI 148 (379)
T ss_dssp CSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTT
T ss_pred CCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCC
Confidence 789999999999999999 666 78888999999999999998 7 899999999999999 33 2333444 888
Q ss_pred cEEEEEEcc-------------CCc-EEEEeCCCcEEEEEcCCCcee--ceeeeccccccc-----------ceeEEeec
Q 008510 72 CVWDAKFLE-------------NGD-IVTACSDGVTRIWTVHSDKVA--DSLELEAYASEL-----------SQYKLCRK 124 (563)
Q Consensus 72 ~V~~v~~~p-------------~g~-i~sgs~Dg~Irvwd~~~~~~~--~~~~~~~~~~~v-----------~~~~~~~~ 124 (563)
.|.+++|+| ++. +++|+.||.|++||+++++.. ....+..+...+ ....+++.
T Consensus 149 ~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~ 228 (379)
T 3jrp_A 149 GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVS 228 (379)
T ss_dssp CEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEE
T ss_pred ceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEe
Confidence 999999999 577 999999999999999876522 112233333221 35566778
Q ss_pred cCCceEEEeCCCCc----------------eeeecccCCCeEEEEecCCCeEEEEEecc-cceEEEeCcEee
Q 008510 125 KVGGLKLEDLPGLE----------------ALQIPGTNAGQTKVVREGDNGVAYSWDMK-EQKWDKLGEVVD 179 (563)
Q Consensus 125 ~~~~i~~~d~~~~~----------------~l~~~g~~dg~~~l~~~~~~~~~~~wd~~-~~~w~~~g~v~~ 179 (563)
.++.|++||+.... +.....+++|.+.+..+.+ +.+++|+.. .+.|..++.+..
T Consensus 229 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~~ 299 (379)
T 3jrp_A 229 QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGD-NKVTLWKENLEGKWEPAGEVHQ 299 (379)
T ss_dssp TTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESS-SSEEEEEEEETTEEEEEEEEC-
T ss_pred CCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCC-CcEEEEeCCCCCccccccceec
Confidence 89999999997642 1112255677766666554 556788876 467776655543
No 102
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.70 E-value=5.9e-16 Score=177.77 Aligned_cols=206 Identities=9% Similarity=0.064 Sum_probs=139.3
Q ss_pred CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEecCCcEEEEE
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIEHPGCVWDAK 77 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~h~~~V~~v~ 77 (563)
+|++||+|+.||+|++|+. .+++... ..|...|.+++|+| | .+++++.|++|++|| +++++.++.|+..|++++
T Consensus 28 dg~~lAsgs~Dg~I~lw~~~~~~~~~~-~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~~~~~V~~v~ 105 (902)
T 2oaj_A 28 TQNLLAIATVTGEVHIYGQQQVEVVIK-LEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVFVPGKITSID 105 (902)
T ss_dssp TTTEEEEEETTSEEEEECSTTCEEEEE-CSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEECSSCEEEEE
T ss_pred CCCEEEEEeCCCEEEEEeCCCcEEEEE-cCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEcCCCCEEEEE
Confidence 5789999999999999999 5555544 45889999999999 7 899999999999999 788999999888999999
Q ss_pred EccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccccceeEEeeccCCceEEEeCCCCceeeecccCCCeEEEEecC
Q 008510 78 FLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLCRKKVGGLKLEDLPGLEALQIPGTNAGQTKVVREG 156 (563)
Q Consensus 78 ~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~d~~~~~~l~~~g~~dg~~~l~~~~ 156 (563)
|+|+|+ +++|+.||.|++||+++++.. ...+....... .. ..-....+.....++++...++...
T Consensus 106 ~sp~g~~l~sgs~dg~V~lwd~~~~~~~-~~~i~~~~~~~--~~-----------~~~h~~~V~sl~~sp~~~~~l~~g~ 171 (902)
T 2oaj_A 106 TDASLDWMLIGLQNGSMIVYDIDRDQLS-SFKLDNLQKSS--FF-----------PAARLSPIVSIQWNPRDIGTVLISY 171 (902)
T ss_dssp CCTTCSEEEEEETTSCEEEEETTTTEEE-EEEECCHHHHH--TC-----------SSSCCCCCCEEEEETTEEEEEEEEC
T ss_pred ECCCCCEEEEEcCCCcEEEEECCCCccc-cceeccccccc--cc-----------cccCCCCeEEEEEccCCCCEEEEEe
Confidence 999999 999999999999999988632 11110000000 00 0001112233334554332333333
Q ss_pred CCeEEEEEecccceEEEeCcEe---eCCCCCCCceeecCcccCcEEEEEc-CCCCeeeeecCCCCCChhHHHH
Q 008510 157 DNGVAYSWDMKEQKWDKLGEVV---DGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRKLPYNRSDNPYDAAD 225 (563)
Q Consensus 157 ~~~~~~~wd~~~~~w~~~g~v~---~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~~~~~w~~a~ 225 (563)
+++.+ +||...+.....-... +..+.........+| .+.|.++.| ++|..++++..|+.+++|++..
T Consensus 172 ~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h-~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~ 242 (902)
T 2oaj_A 172 EYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKR-TPKVIQSLYHPNSLHIITIHEDNSLVFWDANS 242 (902)
T ss_dssp SSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCB-CCCEEEEEECTTSSEEEEEETTCCEEEEETTT
T ss_pred CCCcE-EEECCCCceEEEEecccCCcCCCccccccccccc-CCCeEEEEEcCCCCEEEEEECCCeEEEEECCC
Confidence 44556 8887766543221100 000000000112222 377999999 9999999999999999999854
No 103
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.70 E-value=1.2e-15 Score=151.52 Aligned_cols=179 Identities=17% Similarity=0.324 Sum_probs=136.5
Q ss_pred CCCEEEEEECCCcEEEEcCCCceeEEEecCCCcEEEEEEcC-CC-eEEEEeCCCcEEEEcCCceeEEEe--cCCcEEEEE
Q 008510 2 PGVGIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHA-SG-LIVSGSEDRFAKIWKDGVCVQSIE--HPGCVWDAK 77 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~~g~~i~~l~gH~~~V~~v~~~p-~g-~l~s~s~D~tvriWd~~~~~~~l~--h~~~V~~v~ 77 (563)
+++.+++|+.||+|++|| .++.+..+.+|...|.+++++| ++ .+++++.|+.|++||..+....+. |...|.+++
T Consensus 113 ~~~~l~~~~~d~~i~~~d-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~ 191 (313)
T 3odt_A 113 QDGVVISGSWDKTAKVWK-EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDKVIKTFSGIHNDVVRHLA 191 (313)
T ss_dssp ETTEEEEEETTSEEEEEE-TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTEEEEEECSSCSSCEEEEE
T ss_pred cCCEEEEEeCCCCEEEEc-CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecCceEEEEeccCcccEEEEE
Confidence 467899999999999999 8888899999999999999988 66 999999999999999667777776 778999999
Q ss_pred EccCCcEEEEeCCCcEEEEEcCCCceeceeeecccccccceeEEeeccCCceEEEeCCCCceeeecccCCCeEEEEecCC
Q 008510 78 FLENGDIVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLCRKKVGGLKLEDLPGLEALQIPGTNAGQTKVVREGD 157 (563)
Q Consensus 78 ~~p~g~i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~d~~~~~~l~~~g~~dg~~~l~~~~~ 157 (563)
|+|++.+++|+.||.|++||+++++... .+. .....+.....+++|. ++....
T Consensus 192 ~~~~~~~~~~~~dg~i~i~d~~~~~~~~--~~~-----------------------~~~~~i~~~~~~~~~~--l~~~~~ 244 (313)
T 3odt_A 192 VVDDGHFISCSNDGLIKLVDMHTGDVLR--TYE-----------------------GHESFVYCIKLLPNGD--IVSCGE 244 (313)
T ss_dssp EEETTEEEEEETTSEEEEEETTTCCEEE--EEE-----------------------CCSSCEEEEEECTTSC--EEEEET
T ss_pred EcCCCeEEEccCCCeEEEEECCchhhhh--hhh-----------------------cCCceEEEEEEecCCC--EEEEec
Confidence 9999999999999999999999876322 111 1222233334555662 333334
Q ss_pred CeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeeeecCCCCCChhHHHH
Q 008510 158 NGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRKLPYNRSDNPYDAAD 225 (563)
Q Consensus 158 ~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~~~~~w~~a~ 225 (563)
++.+++||...+... ..+.++. +.|.++.+ ++|. ++....|+.+++|++..
T Consensus 245 dg~v~iwd~~~~~~~---------------~~~~~~~-~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~ 296 (313)
T 3odt_A 245 DRTVRIWSKENGSLK---------------QVITLPA-ISIWSVDCMSNGD-IIVGSSDNLVRIFSQEK 296 (313)
T ss_dssp TSEEEEECTTTCCEE---------------EEEECSS-SCEEEEEECTTSC-EEEEETTSCEEEEESCG
T ss_pred CCEEEEEECCCCcee---------------EEEeccC-ceEEEEEEccCCC-EEEEeCCCcEEEEeCCC
Confidence 466778887665322 1233333 46889999 7777 77788999999999754
No 104
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.69 E-value=6.3e-16 Score=155.98 Aligned_cols=210 Identities=8% Similarity=-0.003 Sum_probs=146.6
Q ss_pred CCCEEEEEECCCcEEEEcC-CCc---eeEEEecCCCcEEEEEEcCCC--eEEEEeCCCcEEEEc--CCceeEEEe---cC
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQ---VLMEMVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK--DGVCVQSIE---HP 70 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~---~i~~l~gH~~~V~~v~~~p~g--~l~s~s~D~tvriWd--~~~~~~~l~---h~ 70 (563)
+|++|++|+.||+|++|++ +++ ....+.+|...|.+++|+|++ .+++|+.|++|++|+ .......+. |.
T Consensus 22 ~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~ 101 (342)
T 1yfq_A 22 SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEAN 101 (342)
T ss_dssp GGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCC
T ss_pred CCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCceEeccccCCC
Confidence 4689999999999999999 555 356677999999999999987 599999999999999 333334443 77
Q ss_pred CcEEEEEEccCCc-EEEEeCCCcEEEEEcCC---------Cceeceeeecccccccc------eeEEeeccCCceEEEeC
Q 008510 71 GCVWDAKFLENGD-IVTACSDGVTRIWTVHS---------DKVADSLELEAYASELS------QYKLCRKKVGGLKLEDL 134 (563)
Q Consensus 71 ~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~---------~~~~~~~~~~~~~~~v~------~~~~~~~~~~~i~~~d~ 134 (563)
..|++++|+| +. +++++.|+.|++||+++ ++...... +...+. ...+++..++.|++||+
T Consensus 102 ~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~l~~~~~d~~i~i~d~ 177 (342)
T 1yfq_A 102 LGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK---VKNKIFTMDTNSSRLIVGMNNSQVQWFRL 177 (342)
T ss_dssp SCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS---SCCCEEEEEECSSEEEEEESTTEEEEEES
T ss_pred CceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe---eCCceEEEEecCCcEEEEeCCCeEEEEEC
Confidence 8999999999 77 99999999999999886 44222111 222221 12556778899999999
Q ss_pred CC-Ccee-------------eecccC-CCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcc-----
Q 008510 135 PG-LEAL-------------QIPGTN-AGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQ----- 194 (563)
Q Consensus 135 ~~-~~~l-------------~~~g~~-dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~----- 194 (563)
.. .... ....++ +|...+..+.+ +.+.+|+...+. ..........+.++.
T Consensus 178 ~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d-g~i~i~~~~~~~---------~~~~~~~~~~~~~~~~~~~~ 247 (342)
T 1yfq_A 178 PLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSID-GRVAVEFFDDQG---------DDYNSSKRFAFRCHRLNLKD 247 (342)
T ss_dssp SCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETT-SEEEEEECCTTC---------CSTTCTTCEEEECCCCCTTC
T ss_pred CccccccceeeecCCCCceeEEEECCCCCCEEEEEecC-CcEEEEEEcCCC---------cccccccceeeecccccccc
Confidence 87 3321 112344 55555554444 445566643320 000001223344442
Q ss_pred ---cCcEEEEEc-CCCCeeeeecCCCCCChhHHHH
Q 008510 195 ---YDYVFDVDI-GDGEPTRKLPYNRSDNPYDAAD 225 (563)
Q Consensus 195 ---~d~v~~vd~-~dg~~~~~~~~n~~~~~w~~a~ 225 (563)
...|.++.+ ++|..++.+..|+.+.+|++..
T Consensus 248 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~ 282 (342)
T 1yfq_A 248 TNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQT 282 (342)
T ss_dssp CSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTT
T ss_pred cccceeEEEEEEcCCCCEEEEecCCceEEEEcCcc
Confidence 137899999 8999999999999999999864
No 105
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.69 E-value=1e-15 Score=161.84 Aligned_cols=202 Identities=19% Similarity=0.252 Sum_probs=140.4
Q ss_pred CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcC--CC-eEEEEeCCCcEEEEc--CCce------------
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHA--SG-LIVSGSEDRFAKIWK--DGVC------------ 63 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p--~g-~l~s~s~D~tvriWd--~~~~------------ 63 (563)
++..+++|+.||+|++||+ +++++.++.+|.+.|.+++|++ ++ .+++|+.|++|++|| ++..
T Consensus 172 ~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~ 251 (464)
T 3v7d_B 172 HGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPL 251 (464)
T ss_dssp STTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSE
T ss_pred CCCEEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcce
Confidence 3458999999999999999 8999999999999999999984 66 899999999999999 3321
Q ss_pred -----------eEEEe-cCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccccc--------eeEEe
Q 008510 64 -----------VQSIE-HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELS--------QYKLC 122 (563)
Q Consensus 64 -----------~~~l~-h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~--------~~~~~ 122 (563)
+..+. |...|.++ ++++. +++|+.||.|++||+++++... .+..+...+. ...++
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~s 327 (464)
T 3v7d_B 252 VFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLY--ILSGHTDRIYSTIYDHERKRCIS 327 (464)
T ss_dssp EESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEE--EECCCSSCEEEEEEETTTTEEEE
T ss_pred EeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEE--EecCCCCCEEEEEEcCCCCEEEE
Confidence 34444 77788887 56677 9999999999999999887543 2333333332 35567
Q ss_pred eccCCceEEEeCCCCceeeec-ccCCCeEEEE-------ecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcc
Q 008510 123 RKKVGGLKLEDLPGLEALQIP-GTNAGQTKVV-------REGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQ 194 (563)
Q Consensus 123 ~~~~~~i~~~d~~~~~~l~~~-g~~dg~~~l~-------~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~ 194 (563)
+..++.|++||+...+.+... ++......+. ..+.++.+.+||...+.-. +..+.
T Consensus 328 g~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~-----------------~~~~~ 390 (464)
T 3v7d_B 328 ASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRK-----------------FSYHH 390 (464)
T ss_dssp EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEE-----------------EEEEC
T ss_pred EeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEcCCEEEEEeCCCcEEEEECCCCcee-----------------eeecC
Confidence 788999999999877665543 5544333222 2223355667776543211 11112
Q ss_pred cCcEEEEEc-CCCCeeeeecCCCCCChhHHHH
Q 008510 195 YDYVFDVDI-GDGEPTRKLPYNRSDNPYDAAD 225 (563)
Q Consensus 195 ~d~v~~vd~-~dg~~~~~~~~n~~~~~w~~a~ 225 (563)
...+..+.+ ++|..++.+. |+.+++|++..
T Consensus 391 ~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~ 421 (464)
T 3v7d_B 391 TNLSAITTFYVSDNILVSGS-ENQFNIYNLRS 421 (464)
T ss_dssp TTCCCEEEEEECSSEEEEEE-TTEEEEEETTT
T ss_pred CCCccEEEEEeCCCEEEEec-CCeEEEEECCC
Confidence 122344445 5666666666 77788888753
No 106
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.68 E-value=3.1e-15 Score=177.73 Aligned_cols=102 Identities=25% Similarity=0.494 Sum_probs=95.2
Q ss_pred CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCC--C-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEE
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHAS--G-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVW 74 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~--g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~ 74 (563)
+|+++++|+.||+|++||+ +++++.++.+|...|.+++|+|+ + .+++|+.|++|++|| +++++.++. |...|+
T Consensus 668 ~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~ 747 (1249)
T 3sfz_A 668 DDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVN 747 (1249)
T ss_dssp TSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEE
T ss_pred CCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEE
Confidence 5789999999999999999 89999999999999999999995 3 799999999999999 888888887 999999
Q ss_pred EEEEccCCc-EEEEeCCCcEEEEEcCCCce
Q 008510 75 DAKFLENGD-IVTACSDGVTRIWTVHSDKV 103 (563)
Q Consensus 75 ~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~ 103 (563)
+++|+|+|+ +++|+.||.|++||+++++.
T Consensus 748 ~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~ 777 (1249)
T 3sfz_A 748 HCRFSPDDELLASCSADGTLRLWDVRSANE 777 (1249)
T ss_dssp EEEECSSTTEEEEEESSSEEEEEEGGGTEE
T ss_pred EEEEecCCCEEEEEECCCeEEEEeCCCCcc
Confidence 999999998 99999999999999988764
No 107
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.68 E-value=9.5e-15 Score=152.89 Aligned_cols=201 Identities=11% Similarity=0.070 Sum_probs=137.9
Q ss_pred CCEEEEEECCCcEEEEcC-CCceeEEEe--cCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEE
Q 008510 3 GVGIISASHDCTIRLWAL-TGQVLMEMV--GHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWD 75 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~-~g~~i~~l~--gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~ 75 (563)
++.|++|. |++|+|||. +|++++.+. +|...|++|+|+|+| .+++|+.|++|+||| ++++++.+. |...+.+
T Consensus 116 ~n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~ 194 (420)
T 4gga_A 116 GNVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGS 194 (420)
T ss_dssp TSEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred CCEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEE
Confidence 45666664 999999999 898887665 678899999999999 999999999999999 888888888 8889999
Q ss_pred EEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeeccccccc--------ceeEEeeccCCceEEEeCCCCcee----ee
Q 008510 76 AKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASEL--------SQYKLCRKKVGGLKLEDLPGLEAL----QI 142 (563)
Q Consensus 76 v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v--------~~~~~~~~~~~~i~~~d~~~~~~l----~~ 142 (563)
++++ +. +++|+.|+.+++||.+..... ...+..+...+ .....++..++.+++|+....+.. ..
T Consensus 195 ~s~~--~~~l~sgs~d~~i~~~d~~~~~~~-~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~ 271 (420)
T 4gga_A 195 LSWN--SYILSSGSRSGHIHHHDVRVAEHH-VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQT 271 (420)
T ss_dssp EEEE--TTEEEEEETTSEEEEEETTSSSCE-EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEE
T ss_pred EeeC--CCEEEEEeCCCceeEeeeccccee-eEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeee
Confidence 8874 45 899999999999999875422 22233333322 245567788899999998754321 11
Q ss_pred -----------cccCCC-eEEEE-ecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCe
Q 008510 143 -----------PGTNAG-QTKVV-REGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEP 208 (563)
Q Consensus 143 -----------~g~~dg-~~~l~-~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~ 208 (563)
..++++ ..... .+..++.+.+||..++..... +..+ ..+..+.+ +++..
T Consensus 272 ~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~---------------~~~~--~~v~~~~~~~~~~~ 334 (420)
T 4gga_A 272 FTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSA---------------VDAH--SQVCSILWSPHYKE 334 (420)
T ss_dssp ECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEE---------------EECS--SCEEEEEEETTTTE
T ss_pred ecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcccccee---------------eccc--cceeeeeecCCCCe
Confidence 122222 22222 223446678888877643321 1111 23556666 66666
Q ss_pred eeeec--CCCCCChhHHH
Q 008510 209 TRKLP--YNRSDNPYDAA 224 (563)
Q Consensus 209 ~~~~~--~n~~~~~w~~a 224 (563)
++... .|+.+.+|+..
T Consensus 335 lv~~sg~~d~~I~iwd~~ 352 (420)
T 4gga_A 335 LISGHGFAQNQLVIWKYP 352 (420)
T ss_dssp EEEEECTTTCCEEEEETT
T ss_pred EEEEEecCCCEEEEEECC
Confidence 55543 56777888764
No 108
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.68 E-value=3.9e-15 Score=156.13 Aligned_cols=166 Identities=18% Similarity=0.235 Sum_probs=120.2
Q ss_pred CEEEEEECCCcEEEEcC-CCcee---------------------------------------EE-EecCCCcEEEEEEcC
Q 008510 4 VGIISASHDCTIRLWAL-TGQVL---------------------------------------ME-MVGHTAIVYSIDSHA 42 (563)
Q Consensus 4 ~~l~s~s~DgtIrlWd~-~g~~i---------------------------------------~~-l~gH~~~V~~v~~~p 42 (563)
..|++|+.|++|++|++ +++.. +. ..+|...|++++|+|
T Consensus 108 ~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 187 (447)
T 3dw8_B 108 AQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINS 187 (447)
T ss_dssp SEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECT
T ss_pred ceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcC
Confidence 68999999999999998 43321 23 368999999999999
Q ss_pred CC-eEEEEeCCCcEEEEc-C--CceeEEE--------ecCCcEEEEEEccCC-c-EEEEeCCCcEEEEEcCCCceec--e
Q 008510 43 SG-LIVSGSEDRFAKIWK-D--GVCVQSI--------EHPGCVWDAKFLENG-D-IVTACSDGVTRIWTVHSDKVAD--S 106 (563)
Q Consensus 43 ~g-~l~s~s~D~tvriWd-~--~~~~~~l--------~h~~~V~~v~~~p~g-~-i~sgs~Dg~Irvwd~~~~~~~~--~ 106 (563)
++ .+++| .|++|++|| . ++++..+ .|...|++++|+|+| . +++|+.||.|++||+++++... .
T Consensus 188 ~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 266 (447)
T 3dw8_B 188 DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHS 266 (447)
T ss_dssp TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTC
T ss_pred CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcccccee
Confidence 99 88888 899999999 3 4555543 288899999999998 6 9999999999999999877411 1
Q ss_pred eeeccccc------------ccc--------eeEEeeccCCceEEEeCCC-Cceee------------------------
Q 008510 107 LELEAYAS------------ELS--------QYKLCRKKVGGLKLEDLPG-LEALQ------------------------ 141 (563)
Q Consensus 107 ~~~~~~~~------------~v~--------~~~~~~~~~~~i~~~d~~~-~~~l~------------------------ 141 (563)
..+..+.. .+. .+.+++.. +.|++||++. ...+.
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~ 345 (447)
T 3dw8_B 267 KLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDK 345 (447)
T ss_dssp EEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCC
T ss_pred eEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccccc
Confidence 12222221 222 33445555 9999999975 33221
Q ss_pred --ecccCCCeEEEEecCCCeEEEEEecccceEE
Q 008510 142 --IPGTNAGQTKVVREGDNGVAYSWDMKEQKWD 172 (563)
Q Consensus 142 --~~g~~dg~~~l~~~~~~~~~~~wd~~~~~w~ 172 (563)
...+++|.+.+..+.+ +.+++||..++...
T Consensus 346 ~~~~~s~~~~~l~s~s~d-g~v~iwd~~~~~~~ 377 (447)
T 3dw8_B 346 FECCWNGSDSVVMTGSYN-NFFRMFDRNTKRDI 377 (447)
T ss_dssp CCEEECTTSSEEEEECST-TEEEEEETTTCCEE
T ss_pred eEEEECCCCCEEEEeccC-CEEEEEEcCCCcce
Confidence 2355777776555544 77889998877543
No 109
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.67 E-value=1.2e-15 Score=158.50 Aligned_cols=157 Identities=13% Similarity=0.272 Sum_probs=106.2
Q ss_pred CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC--eEEEEeCCCcEEEEc--CCceeEEE---------
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK--DGVCVQSI--------- 67 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g--~l~s~s~D~tvriWd--~~~~~~~l--------- 67 (563)
||++|+|||.|++|||||+ ++.++..+.+|.+.|.+++|+|++ .+++|+.|++|++|| +++.....
T Consensus 155 d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~ 234 (393)
T 4gq1_A 155 AEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNP 234 (393)
T ss_dssp EEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCC
T ss_pred CCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccc
Confidence 5789999999999999999 788888889999999999999987 799999999999999 44332211
Q ss_pred -----------------ecCCcEEEEEEc-cCCc-EEEEeCCCcEEEEEcCCCceeceeeec-----------------c
Q 008510 68 -----------------EHPGCVWDAKFL-ENGD-IVTACSDGVTRIWTVHSDKVADSLELE-----------------A 111 (563)
Q Consensus 68 -----------------~h~~~V~~v~~~-p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~-----------------~ 111 (563)
.|...|.+++|. |+|. +++++.|+++++||+..++........ .
T Consensus 235 ~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 314 (393)
T 4gq1_A 235 WLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISL 314 (393)
T ss_dssp CSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECS
T ss_pred eEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccc
Confidence 155678999987 6888 999999999999999876532111000 0
Q ss_pred cc--------cc-cceeEEeeccCCceEEEeCCCCceeeec-ccCCCeEEEEecCCC
Q 008510 112 YA--------SE-LSQYKLCRKKVGGLKLEDLPGLEALQIP-GTNAGQTKVVREGDN 158 (563)
Q Consensus 112 ~~--------~~-v~~~~~~~~~~~~i~~~d~~~~~~l~~~-g~~dg~~~l~~~~~~ 158 (563)
+. .. -..+..++..++.|++||...+...... ++......+.+++++
T Consensus 315 ~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG 371 (393)
T 4gq1_A 315 FPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDG 371 (393)
T ss_dssp SCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTS
T ss_pred cCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCC
Confidence 00 00 1123455677899999998766544332 333333344444443
No 110
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.67 E-value=1.9e-15 Score=165.14 Aligned_cols=199 Identities=15% Similarity=0.262 Sum_probs=153.0
Q ss_pred EEEEEECCCcEEEEcC-CCceeEEEecCCC---cEEEEEEcCC-C-eEEEEeCCCcEEEEc--CCceeEEE-----ecCC
Q 008510 5 GIISASHDCTIRLWAL-TGQVLMEMVGHTA---IVYSIDSHAS-G-LIVSGSEDRFAKIWK--DGVCVQSI-----EHPG 71 (563)
Q Consensus 5 ~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~---~V~~v~~~p~-g-~l~s~s~D~tvriWd--~~~~~~~l-----~h~~ 71 (563)
.+++|+.|++|++||. +++++.++.+|.. .|.+++|+|+ + .+++++.|++|++|| +++.+..+ .|..
T Consensus 175 ~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 254 (615)
T 1pgu_A 175 RSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQG 254 (615)
T ss_dssp EEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCS
T ss_pred EEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCC
Confidence 7999999999999999 8899999999999 9999999999 8 899999999999999 78889988 6888
Q ss_pred cEEEEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeecc--cccc-------cceeEEeeccCCceEEEeCCCCceee
Q 008510 72 CVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEA--YASE-------LSQYKLCRKKVGGLKLEDLPGLEALQ 141 (563)
Q Consensus 72 ~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~--~~~~-------v~~~~~~~~~~~~i~~~d~~~~~~l~ 141 (563)
.|.+++|+ ++. +++++.|+.|++||+++++......... .... -....+++..++.+.+||+...+.+.
T Consensus 255 ~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~ 333 (615)
T 1pgu_A 255 GIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLK 333 (615)
T ss_dssp CEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEE
T ss_pred ceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEE
Confidence 99999999 888 9999999999999999887554333221 0111 23455677888999999998765544
Q ss_pred ec-ccCCCeEEEEe-----cCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEcCCCCeeeeecCC
Q 008510 142 IP-GTNAGQTKVVR-----EGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDIGDGEPTRKLPYN 215 (563)
Q Consensus 142 ~~-g~~dg~~~l~~-----~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~~dg~~~~~~~~n 215 (563)
.. ++.+....+.. ...++.+.+|+.. .+ ..+|. +.|.++.++++..++....|
T Consensus 334 ~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~--------~~------------~~~~~-~~v~~~~~~~~~~l~~~~~d 392 (615)
T 1pgu_A 334 TISGHNKGITALTVNPLISGSYDGRIMEWSSS--------SM------------HQDHS-NLIVSLDNSKAQEYSSISWD 392 (615)
T ss_dssp EECCCSSCEEEEETTTTEEEETTSCEEETTTT--------EE------------ECCCC-SCEEEEECCSTTCCEEEETT
T ss_pred EEeCCCCCEEEEEecCcEEECCCCeEEEEEch--------hh------------cCccc-CceEEEEECCCcEEEEEeCC
Confidence 43 55555444433 2223444556543 01 02333 67889999778889999999
Q ss_pred CCCChhHHHH
Q 008510 216 RSDNPYDAAD 225 (563)
Q Consensus 216 ~~~~~w~~a~ 225 (563)
+.+..|++..
T Consensus 393 ~~i~~~~~~~ 402 (615)
T 1pgu_A 393 DTLKVNGITK 402 (615)
T ss_dssp TEEEETTEEE
T ss_pred CCEEEEEccc
Confidence 9999998753
No 111
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.67 E-value=4.7e-16 Score=165.21 Aligned_cols=203 Identities=9% Similarity=0.026 Sum_probs=132.1
Q ss_pred CCCEEEEEECCCcEE-----------------E----------EcC-CCceeEEEe-cCCCcEEEEEEcCCC-eEEEEeC
Q 008510 2 PGVGIISASHDCTIR-----------------L----------WAL-TGQVLMEMV-GHTAIVYSIDSHASG-LIVSGSE 51 (563)
Q Consensus 2 ~g~~l~s~s~DgtIr-----------------l----------Wd~-~g~~i~~l~-gH~~~V~~v~~~p~g-~l~s~s~ 51 (563)
||+++||+|.|++|| + |++ +++....+. +|...|++++|+|+| .+++++.
T Consensus 26 DG~~iASas~D~TV~d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~V~~vawSPdG~~LAs~s~ 105 (588)
T 2j04_A 26 DGTLYLTTFPDISIGQPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVCYPRVCKPSPIDDWMAVLSN 105 (588)
T ss_dssp TSCEEEECSSSEEEEEECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSCCEEEEEECSSSSCEEEEET
T ss_pred CCCEEEEEcCCceeecccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCCcEEEEEECCCCCEEEEEeC
Confidence 689999999999994 1 223 222222233 678899999999999 8999999
Q ss_pred CCcEEEEcCCceeEEEecCC-----cEEEEEEccCCc-EEEEeCCCcEEEEEcCCCce-----eceeee----ccccccc
Q 008510 52 DRFAKIWKDGVCVQSIEHPG-----CVWDAKFLENGD-IVTACSDGVTRIWTVHSDKV-----ADSLEL----EAYASEL 116 (563)
Q Consensus 52 D~tvriWd~~~~~~~l~h~~-----~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~-----~~~~~~----~~~~~~v 116 (563)
||+|+||+...++..+.|.. .|++++|+|+|+ +++|+.||+|++||+.++.. .....+ .+|...|
T Consensus 106 dg~V~iwd~~~~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V 185 (588)
T 2j04_A 106 NGNVSVFKDNKMLTNLDSKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWV 185 (588)
T ss_dssp TSCEEEEETTEEEEECCCSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCE
T ss_pred CCcEEEEeCCceeeeccCCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccE
Confidence 99999999333766666443 599999999999 99999999999999998752 011222 2222232
Q ss_pred -------ceeEEeeccCCceEEEeCCCCcee---e-e-cccCCCeEEEEec-------CCCeEEEEEecccceEEEeCcE
Q 008510 117 -------SQYKLCRKKVGGLKLEDLPGLEAL---Q-I-PGTNAGQTKVVRE-------GDNGVAYSWDMKEQKWDKLGEV 177 (563)
Q Consensus 117 -------~~~~~~~~~~~~i~~~d~~~~~~l---~-~-~g~~dg~~~l~~~-------~~~~~~~~wd~~~~~w~~~g~v 177 (563)
+. .+++..|+.+++||+.+.... . . .+|.+....+.++ .+ +.+++|+...+.-.
T Consensus 186 ~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFsg~~LASa~~-~tIkLWd~~~~~~~----- 258 (588)
T 2j04_A 186 THIVWYEDV-LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIVDYKVVLTCP-GYVHKIDLKNYSIS----- 258 (588)
T ss_dssp EEEEEETTE-EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEETTEEEEECS-SEEEEEETTTTEEE-----
T ss_pred EEEEEcCCc-EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEECCEEEEEeC-CeEEEEECCCCeEE-----
Confidence 34 567788999999999877632 1 2 2444333222222 22 45566665443221
Q ss_pred eeCCCCCCCceeecCcccCcEEEEEc---CCCCeeeeecCCCCCChhHH
Q 008510 178 VDGPDDGMNRPILDGIQYDYVFDVDI---GDGEPTRKLPYNRSDNPYDA 223 (563)
Q Consensus 178 ~~~~~~~~~~~~~~g~~~d~v~~vd~---~dg~~~~~~~~n~~~~~w~~ 223 (563)
....||. +.|.++.+ +||..++....++. ++|..
T Consensus 259 ----------~~~~gh~-~~V~~va~~~s~d~~~La~a~edG~-klw~~ 295 (588)
T 2j04_A 259 ----------SLKTGSL-ENFHIIPLNHEKESTILLMSNKTSY-KVLLE 295 (588)
T ss_dssp ----------EEECSCC-SCCCEEEETTCSSCEEEEECSSCEE-EEEES
T ss_pred ----------EEEcCCC-ceEEEEEeeeCCCCCEEEEEcCCCC-EEEee
Confidence 1112543 66777777 34444444444666 77765
No 112
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.66 E-value=3.5e-15 Score=169.04 Aligned_cols=167 Identities=20% Similarity=0.306 Sum_probs=128.2
Q ss_pred CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CC-ceeEEEe-cCCcEEE
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DG-VCVQSIE-HPGCVWD 75 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~-~~~~~l~-h~~~V~~ 75 (563)
+|++|++|+.||+|++||+ +++++.++.+|.+.|.+++|+|++ .+++|+.|++|++|+ ++ .+.+.+. |...|.+
T Consensus 66 ~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~ 145 (814)
T 3mkq_A 66 RKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMC 145 (814)
T ss_dssp GGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEE
T ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEE
Confidence 4789999999999999999 899999999999999999999999 899999999999999 44 6667776 8889999
Q ss_pred EEEcc-CCc-EEEEeCCCcEEEEEcCCCceeceeeecccccc----------cceeEEeeccCCceEEEeCCCCceeee-
Q 008510 76 AKFLE-NGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASE----------LSQYKLCRKKVGGLKLEDLPGLEALQI- 142 (563)
Q Consensus 76 v~~~p-~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~----------v~~~~~~~~~~~~i~~~d~~~~~~l~~- 142 (563)
++|+| ++. +++|+.||.|++||+++++........ +... -....+++..++.|++||+.....+..
T Consensus 146 ~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~ 224 (814)
T 3mkq_A 146 VAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTG-QERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL 224 (814)
T ss_dssp EEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECC-CTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEE
T ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecC-CCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEE
Confidence 99999 777 999999999999999877633221111 1011 234566778889999999976654332
Q ss_pred ----------cccCCCeEEEEecCCCeEEEEEecccce
Q 008510 143 ----------PGTNAGQTKVVREGDNGVAYSWDMKEQK 170 (563)
Q Consensus 143 ----------~g~~dg~~~l~~~~~~~~~~~wd~~~~~ 170 (563)
..+++|...+..+.+ +.+++|+..++.
T Consensus 225 ~~~~~~v~~~~~~~~~~~l~~~~~d-g~v~vwd~~~~~ 261 (814)
T 3mkq_A 225 EGHMSNVSFAVFHPTLPIIISGSED-GTLKIWNSSTYK 261 (814)
T ss_dssp ECCSSCEEEEEECSSSSEEEEEETT-SCEEEEETTTCS
T ss_pred cCCCCCEEEEEEcCCCCEEEEEeCC-CeEEEEECCCCc
Confidence 244555554444444 455678876543
No 113
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.66 E-value=2.1e-14 Score=143.00 Aligned_cols=132 Identities=14% Similarity=0.182 Sum_probs=103.4
Q ss_pred CCEEEEEECCCcEEEEcC-CCceeEEEe--cCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEE
Q 008510 3 GVGIISASHDCTIRLWAL-TGQVLMEMV--GHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWD 75 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~-~g~~i~~l~--gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~ 75 (563)
++.|++| .|++|||||+ +|++++++. +|...|.+++|+|+| .+++|+.|++|++|+ ++++++.+. |...+.+
T Consensus 36 ~~~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~ 114 (318)
T 4ggc_A 36 GNVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGS 114 (318)
T ss_dssp TSEEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEE
T ss_pred CCEEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEE
Confidence 4556655 5999999999 899888775 678889999999999 999999999999999 888888888 8888877
Q ss_pred EEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccc--------cceeEEeeccCCceEEEeCCCCc
Q 008510 76 AKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASE--------LSQYKLCRKKVGGLKLEDLPGLE 138 (563)
Q Consensus 76 v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~--------v~~~~~~~~~~~~i~~~d~~~~~ 138 (563)
+.+ ++. +++|+.++.+++|+....... ...+..+... .....+++..++.|++||+...+
T Consensus 115 ~~~--~~~~l~s~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~ 183 (318)
T 4ggc_A 115 LSW--NSYILSSGSRSGHIHHHDVRVAEHH-VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGE 183 (318)
T ss_dssp EEE--ETTEEEEEETTSEEEEEETTSSSCE-EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBT
T ss_pred eec--CCCEEEEEecCCceEeeecCCCcee-EEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCc
Confidence 655 455 899999999999999876522 1222222222 22456678889999999997653
No 114
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.66 E-value=6.4e-16 Score=157.17 Aligned_cols=178 Identities=10% Similarity=0.009 Sum_probs=130.6
Q ss_pred CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCCeEEEEeCCCcEEEEc-C----------CceeEEEe-
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWK-D----------GVCVQSIE- 68 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g~l~s~s~D~tvriWd-~----------~~~~~~l~- 68 (563)
++.++++|+.||+|++||+ +++++.++. ...|.++.++|+ +++++.|++|++|+ . ++.++.+.
T Consensus 47 d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~--~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~ 122 (343)
T 3lrv_A 47 DKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA--IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEV 122 (343)
T ss_dssp EEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS--EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEEC
T ss_pred CCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc--eEEecCCCeEEEEEccCceEEeecCCcceeEEeec
Confidence 4678999999999999999 888888886 566888888888 99999999999997 3 23355554
Q ss_pred -cCCcEEEEEEcc--CCc-EEEEeCCCcEEEEEcCCCceeceeeecccccccceeEEeeccCCceEEEeCC-CCceeeec
Q 008510 69 -HPGCVWDAKFLE--NGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLCRKKVGGLKLEDLP-GLEALQIP 143 (563)
Q Consensus 69 -h~~~V~~v~~~p--~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~d~~-~~~~l~~~ 143 (563)
|.+.|.+++|+| +++ +++|+.||+|++||+++++.... .... ...+....
T Consensus 123 ~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~-------------------------~~~~~~~~i~~~~ 177 (343)
T 3lrv_A 123 DSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIV-------------------------HSAKSDVEYSSGV 177 (343)
T ss_dssp CCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEE-------------------------ECCCSSCCCCEEE
T ss_pred CCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEE-------------------------EecCCCCceEEEE
Confidence 657899999999 888 89999999999999998873211 1000 11122334
Q ss_pred ccCCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecC-cccCcEEEEEc-CCCCeeeeecCCCCCChh
Q 008510 144 GTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDG-IQYDYVFDVDI-GDGEPTRKLPYNRSDNPY 221 (563)
Q Consensus 144 g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g-~~~d~v~~vd~-~dg~~~~~~~~n~~~~~w 221 (563)
.+++|.+.+..+.+ +.+.+||..++.. ....+.+ |. +.|.++.| ++|..++....+ .+++|
T Consensus 178 ~~pdg~~lasg~~d-g~i~iwd~~~~~~--------------~~~~~~~~h~-~~v~~l~fs~~g~~l~s~~~~-~v~iw 240 (343)
T 3lrv_A 178 LHKDSLLLALYSPD-GILDVYNLSSPDQ--------------ASSRFPVDEE-AKIKEVKFADNGYWMVVECDQ-TVVCF 240 (343)
T ss_dssp ECTTSCEEEEECTT-SCEEEEESSCTTS--------------CCEECCCCTT-SCEEEEEECTTSSEEEEEESS-BEEEE
T ss_pred ECCCCCEEEEEcCC-CEEEEEECCCCCC--------------CccEEeccCC-CCEEEEEEeCCCCEEEEEeCC-eEEEE
Confidence 66777766665555 5667888765421 1123455 44 78999999 899988888844 99999
Q ss_pred HHHH
Q 008510 222 DAAD 225 (563)
Q Consensus 222 ~~a~ 225 (563)
++..
T Consensus 241 d~~~ 244 (343)
T 3lrv_A 241 DLRK 244 (343)
T ss_dssp ETTS
T ss_pred EcCC
Confidence 9753
No 115
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.66 E-value=2e-15 Score=154.55 Aligned_cols=98 Identities=16% Similarity=0.258 Sum_probs=87.7
Q ss_pred EEEE--EECCCcEEEEcC-CCc----------------eeEEEecCCCcEEEEEEcCCC-eEEEEeCCCc-EEEEc--CC
Q 008510 5 GIIS--ASHDCTIRLWAL-TGQ----------------VLMEMVGHTAIVYSIDSHASG-LIVSGSEDRF-AKIWK--DG 61 (563)
Q Consensus 5 ~l~s--~s~DgtIrlWd~-~g~----------------~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~t-vriWd--~~ 61 (563)
.++. |+.||+|++||+ +++ ++.++.+|.+.|.+++|+|+| .++||+.|++ |++|| ++
T Consensus 149 ~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~ 228 (355)
T 3vu4_A 149 LLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDG 228 (355)
T ss_dssp EEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTC
T ss_pred EEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCC
Confidence 4444 588999999999 544 278899999999999999999 9999999999 99999 78
Q ss_pred ceeEEEe---cCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCc
Q 008510 62 VCVQSIE---HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDK 102 (563)
Q Consensus 62 ~~~~~l~---h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~ 102 (563)
+++.++. |...|++++|+|+|. +++|+.|++|++||++.+.
T Consensus 229 ~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~ 273 (355)
T 3vu4_A 229 VLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQ 273 (355)
T ss_dssp CEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCS
T ss_pred cEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCC
Confidence 9999997 888999999999999 9999999999999998764
No 116
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.65 E-value=6.7e-15 Score=160.72 Aligned_cols=201 Identities=14% Similarity=0.152 Sum_probs=153.4
Q ss_pred CCCEEEEEECC----CcEEEEcCCCceeEEEecCCCcEEEEEEcCCC--eEEEEeCCCcEEEEc--CCceeEEEe-cCC-
Q 008510 2 PGVGIISASHD----CTIRLWALTGQVLMEMVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK--DGVCVQSIE-HPG- 71 (563)
Q Consensus 2 ~g~~l~s~s~D----gtIrlWd~~g~~i~~l~gH~~~V~~v~~~p~g--~l~s~s~D~tvriWd--~~~~~~~l~-h~~- 71 (563)
+|+++++++.| +.|++|| .++++..+.+|...|++++|+|++ .+++++.|++|++|| +++++..+. |..
T Consensus 127 ~~~~l~~~~~~~~~~~~v~~~d-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~ 205 (615)
T 1pgu_A 127 EGRRLCVVGEGRDNFGVFISWD-SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQ 205 (615)
T ss_dssp TSSEEEEEECCSSCSEEEEETT-TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCT
T ss_pred CCCEEEEeccCCCCccEEEEEE-CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCC
Confidence 57899999998 7999999 778889999999999999999998 699999999999999 778888888 888
Q ss_pred --cEEEEEEccC-Cc-EEEEeCCCcEEEEEcCCCceeceeeec---cccccc-------ceeEEeeccCCceEEEeCCCC
Q 008510 72 --CVWDAKFLEN-GD-IVTACSDGVTRIWTVHSDKVADSLELE---AYASEL-------SQYKLCRKKVGGLKLEDLPGL 137 (563)
Q Consensus 72 --~V~~v~~~p~-g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~---~~~~~v-------~~~~~~~~~~~~i~~~d~~~~ 137 (563)
.|++++|+|+ |+ +++|+.||.|++||+++++...... . .+...+ ....+++..++.+++||+...
T Consensus 206 ~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~wd~~~~ 284 (615)
T 1pgu_A 206 GSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIE-DDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTS 284 (615)
T ss_dssp TCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECC-BTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTT
T ss_pred CceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEec-ccccccCCceEEEEEcCCCEEEEEcCCCcEEEEECCCC
Confidence 8999999999 88 8999999999999999887543321 1 233322 234556777899999999876
Q ss_pred ceeeec-cc-------------CCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc
Q 008510 138 EALQIP-GT-------------NAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI 203 (563)
Q Consensus 138 ~~l~~~-g~-------------~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~ 203 (563)
+.+... .+ +++...+..+.+ +.+++|+...+.. ...+.+|. +.|.++.+
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~i~~~d~~~~~~---------------~~~~~~~~-~~v~~~~~ 347 (615)
T 1pgu_A 285 KCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLD-GTLNFYELGHDEV---------------LKTISGHN-KGITALTV 347 (615)
T ss_dssp EEEEEEECCTTCGGGCEEEEEEEETTEEEEEETT-SCEEEEETTEEEE---------------EEEECCCS-SCEEEEET
T ss_pred cEEEEEcCCCCcccCceeEEEeCCCCeEEEEECC-CCEEEEECCCCcE---------------EEEEeCCC-CCEEEEEe
Confidence 654433 22 134444444443 4566777654321 12244554 67899999
Q ss_pred CCCCeeeeecCCCCCChhHHH
Q 008510 204 GDGEPTRKLPYNRSDNPYDAA 224 (563)
Q Consensus 204 ~dg~~~~~~~~n~~~~~w~~a 224 (563)
.. ++....|+.+++|+..
T Consensus 348 -~~--l~~~~~dg~i~~w~~~ 365 (615)
T 1pgu_A 348 -NP--LISGSYDGRIMEWSSS 365 (615)
T ss_dssp -TT--TEEEETTSCEEETTTT
T ss_pred -cC--cEEECCCCeEEEEEch
Confidence 44 9999999999999976
No 117
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.65 E-value=6.1e-15 Score=149.72 Aligned_cols=181 Identities=17% Similarity=0.274 Sum_probs=135.8
Q ss_pred eeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEEEEEccCCc-EEEEeCCCcEEEEEc
Q 008510 24 VLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDAKFLENGD-IVTACSDGVTRIWTV 98 (563)
Q Consensus 24 ~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~ 98 (563)
...++.+|.+.|.+++|+|+| .+++|+.|+.|++|| +++.+..+. |...|++++|+|+++ +++++.||.|++||+
T Consensus 24 ~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~ 103 (369)
T 3zwl_B 24 KAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDV 103 (369)
T ss_dssp EEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEET
T ss_pred ccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence 345689999999999999999 999999999999999 888888888 889999999999998 999999999999999
Q ss_pred CCCceeceeeecccccccc--------eeEEeeccC-----CceEEEeCCCCc------------------------eee
Q 008510 99 HSDKVADSLELEAYASELS--------QYKLCRKKV-----GGLKLEDLPGLE------------------------ALQ 141 (563)
Q Consensus 99 ~~~~~~~~~~~~~~~~~v~--------~~~~~~~~~-----~~i~~~d~~~~~------------------------~l~ 141 (563)
++++...... +...+. ...+.+..+ +.+.+||+.... ...
T Consensus 104 ~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (369)
T 3zwl_B 104 SNGQCVATWK---SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATV 180 (369)
T ss_dssp TTCCEEEEEE---CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEE
T ss_pred CCCcEEEEee---cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeE
Confidence 9987554332 222222 334444555 899999986542 122
Q ss_pred ecccCCCeEEEEecCCCeEEEEEeccc-ceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeeeecCCCCCC
Q 008510 142 IPGTNAGQTKVVREGDNGVAYSWDMKE-QKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRKLPYNRSDN 219 (563)
Q Consensus 142 ~~g~~dg~~~l~~~~~~~~~~~wd~~~-~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~~~~ 219 (563)
...+++|...++...+ +.+++||... +.. ...+.++. +.|.++.+ ++|..++....|+.+.
T Consensus 181 ~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~---------------~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~ 243 (369)
T 3zwl_B 181 AGWSTKGKYIIAGHKD-GKISKYDVSNNYEY---------------VDSIDLHE-KSISDMQFSPDLTYFITSSRDTNSF 243 (369)
T ss_dssp EEECGGGCEEEEEETT-SEEEEEETTTTTEE---------------EEEEECCS-SCEEEEEECTTSSEEEEEETTSEEE
T ss_pred EEEcCCCCEEEEEcCC-CEEEEEECCCCcEe---------------EEEEecCC-CceeEEEECCCCCEEEEecCCceEE
Confidence 2245566666555554 5667888755 221 12233443 56889999 8999999999999999
Q ss_pred hhHHH
Q 008510 220 PYDAA 224 (563)
Q Consensus 220 ~w~~a 224 (563)
+|++.
T Consensus 244 v~d~~ 248 (369)
T 3zwl_B 244 LVDVS 248 (369)
T ss_dssp EEETT
T ss_pred EEECC
Confidence 99874
No 118
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.65 E-value=6e-15 Score=155.84 Aligned_cols=138 Identities=12% Similarity=0.011 Sum_probs=109.6
Q ss_pred CCCEE-EEEECCCcEEEEcCC---CceeEEEe--cCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCcee----EEEe
Q 008510 2 PGVGI-ISASHDCTIRLWALT---GQVLMEMV--GHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCV----QSIE 68 (563)
Q Consensus 2 ~g~~l-~s~s~DgtIrlWd~~---g~~i~~l~--gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~----~~l~ 68 (563)
+|++| ++|+.||+|++||+. ++++..+. +|...|++++|+|+| .+++|+.|+.|++|+ +++.. ..+.
T Consensus 113 d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~ 192 (450)
T 2vdu_B 113 DESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPIL 192 (450)
T ss_dssp TSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSE
T ss_pred CCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeee
Confidence 46775 899999999999984 67888876 677999999999999 999999999999999 44433 3555
Q ss_pred -cCCcEEEEEEccC---Cc-EEEEeCCCcEEEEEcCCCceeceeeeccccccc-------ceeEEeeccCCceEEEeCCC
Q 008510 69 -HPGCVWDAKFLEN---GD-IVTACSDGVTRIWTVHSDKVADSLELEAYASEL-------SQYKLCRKKVGGLKLEDLPG 136 (563)
Q Consensus 69 -h~~~V~~v~~~p~---g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v-------~~~~~~~~~~~~i~~~d~~~ 136 (563)
|...|++++|+|+ +. +++|+.|+.|++||+++++..... +..+...+ ....+++..++.|++||+.+
T Consensus 193 ~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~-~~~h~~~v~~~~~sd~~~l~s~~~d~~v~vwd~~~ 271 (450)
T 2vdu_B 193 GHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKW-LFGHKHFVSSICCGKDYLLLSAGGDDKIFAWDWKT 271 (450)
T ss_dssp ECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEE-CCCCSSCEEEEEECSTTEEEEEESSSEEEEEETTT
T ss_pred cccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeee-ecCCCCceEEEEECCCCEEEEEeCCCeEEEEECCC
Confidence 8889999999999 87 999999999999999988643221 22232222 34556777889999999987
Q ss_pred Ccee
Q 008510 137 LEAL 140 (563)
Q Consensus 137 ~~~l 140 (563)
.+.+
T Consensus 272 ~~~~ 275 (450)
T 2vdu_B 272 GKNL 275 (450)
T ss_dssp CCEE
T ss_pred CcEe
Confidence 7643
No 119
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.65 E-value=3.4e-15 Score=149.42 Aligned_cols=101 Identities=18% Similarity=0.214 Sum_probs=79.3
Q ss_pred CCCEEEEEECCCcEEEEcC-CCceeEEEecCC---CcEEEEEEcCCC-eE------------EEEeCCCcEEEEc--CCc
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHT---AIVYSIDSHASG-LI------------VSGSEDRFAKIWK--DGV 62 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~---~~V~~v~~~p~g-~l------------~s~s~D~tvriWd--~~~ 62 (563)
++.+|+|||.|++||+||+ +|++++++.+|. ..+.+++|+|+| .+ +||+.|++||+|| +++
T Consensus 192 ~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk 271 (356)
T 2w18_A 192 MQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTL 271 (356)
T ss_dssp STTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTE
T ss_pred CCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCE
Confidence 4588999999999999999 899999999765 367788999999 54 6789999999999 778
Q ss_pred eeEEEe------cCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCcee
Q 008510 63 CVQSIE------HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVA 104 (563)
Q Consensus 63 ~~~~l~------h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~ 104 (563)
++.++. |...+.+..++ |. +++|+.|++||+||+.+++..
T Consensus 272 ~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l 318 (356)
T 2w18_A 272 SVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCT 318 (356)
T ss_dssp EEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEE
T ss_pred EEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEE
Confidence 777652 44445444443 66 899999999999999999844
No 120
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.64 E-value=8.8e-15 Score=150.82 Aligned_cols=204 Identities=11% Similarity=0.052 Sum_probs=142.8
Q ss_pred CCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eE-EEEeCCCcEEEEc--CCceeEEEecCCcEEEEE
Q 008510 3 GVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LI-VSGSEDRFAKIWK--DGVCVQSIEHPGCVWDAK 77 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l-~s~s~D~tvriWd--~~~~~~~l~h~~~V~~v~ 77 (563)
+..+++++.|++|++||+ +++++..+.+|.. +.+++|+|+| .+ ++++.|++|++|| ++++++.+.+...+.+++
T Consensus 2 ~~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~ 80 (391)
T 1l0q_A 2 TFAYIANSESDNISVIDVTSNKVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVA 80 (391)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEEECSSS-EEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEE
T ss_pred CEEEEEcCCCCEEEEEECCCCeEEEEeecCCC-cceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCccceE
Confidence 356899999999999999 8899999988765 8999999999 54 7888999999999 788888888667999999
Q ss_pred EccCCc-E-EEEeCCCcEEEEEcCCCceeceeeecc----ccccc-c-eeEEeeccCCceEEEeCCCCceeee-------
Q 008510 78 FLENGD-I-VTACSDGVTRIWTVHSDKVADSLELEA----YASEL-S-QYKLCRKKVGGLKLEDLPGLEALQI------- 142 (563)
Q Consensus 78 ~~p~g~-i-~sgs~Dg~Irvwd~~~~~~~~~~~~~~----~~~~v-~-~~~~~~~~~~~i~~~d~~~~~~l~~------- 142 (563)
|+|+|+ + ++++.|+.|++||+.+++......... ..-.. . .+.++...++.|.+||+.+.+.+..
T Consensus 81 ~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~ 160 (391)
T 1l0q_A 81 VSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSP 160 (391)
T ss_dssp ECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSE
T ss_pred ECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCCc
Confidence 999998 6 455567999999999987543322111 11111 1 2335667789999999977654332
Q ss_pred ---cccCCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeeeec---CC
Q 008510 143 ---PGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRKLP---YN 215 (563)
Q Consensus 143 ---~g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~---~n 215 (563)
..+++|...++....++.+++||...+.....- . . .+.+..+.+ ++|+.++... .+
T Consensus 161 ~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~---~------------~--~~~~~~~~~~~~g~~l~~~~~~~~~ 223 (391)
T 1l0q_A 161 KGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTV---K------------V--EAAPSGIAVNPEGTKAYVTNVDKYF 223 (391)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE---E------------C--SSEEEEEEECTTSSEEEEEEECSSC
T ss_pred ceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEE---e------------c--CCCccceEECCCCCEEEEEecCcCC
Confidence 256677766555555577888998766433210 0 0 123455555 5565555554 45
Q ss_pred CCCChhHHH
Q 008510 216 RSDNPYDAA 224 (563)
Q Consensus 216 ~~~~~w~~a 224 (563)
..+.+|+..
T Consensus 224 ~~v~~~d~~ 232 (391)
T 1l0q_A 224 NTVSMIDTG 232 (391)
T ss_dssp CEEEEEETT
T ss_pred CcEEEEECC
Confidence 555666553
No 121
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.64 E-value=2e-14 Score=148.13 Aligned_cols=140 Identities=15% Similarity=0.213 Sum_probs=109.5
Q ss_pred CCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC--eEEEEeCCCcEEEEc--CC-ceeEEE---------
Q 008510 3 GVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK--DG-VCVQSI--------- 67 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g--~l~s~s~D~tvriWd--~~-~~~~~l--------- 67 (563)
+.++++|+.||.|++||+ +++++..+.+|...|.+++|+|++ .+++|+.|++|++|| .+ .++..+
T Consensus 156 ~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 235 (408)
T 4a11_B 156 HCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQ 235 (408)
T ss_dssp CCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCC
T ss_pred CcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccce
Confidence 458999999999999999 789999999999999999999998 489999999999999 32 355554
Q ss_pred ------e-cCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeeccc-----------ccccceeEEeeccCCc
Q 008510 68 ------E-HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAY-----------ASELSQYKLCRKKVGG 128 (563)
Q Consensus 68 ------~-h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~-----------~~~v~~~~~~~~~~~~ 128 (563)
. |...|.+++|+|+|. +++|+.||.|++||+++++.......... ........+....++.
T Consensus 236 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (408)
T 4a11_B 236 AVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGST 315 (408)
T ss_dssp CTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTE
T ss_pred eeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCE
Confidence 2 777999999999998 99999999999999998764321111000 0111234455567789
Q ss_pred eEEEeCCCCceeee
Q 008510 129 LKLEDLPGLEALQI 142 (563)
Q Consensus 129 i~~~d~~~~~~l~~ 142 (563)
+.+||+...+.+..
T Consensus 316 i~v~d~~~~~~~~~ 329 (408)
T 4a11_B 316 IAVYTVYSGEQITM 329 (408)
T ss_dssp EEEEETTTCCEEEE
T ss_pred EEEEECcCCcceee
Confidence 99999987665543
No 122
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.63 E-value=9.6e-15 Score=153.45 Aligned_cols=133 Identities=23% Similarity=0.295 Sum_probs=104.9
Q ss_pred CC-EEEEEECCCcEEEEcC-CCc-------eeEEEecCCCcEEEEEEcCC-C-eEEEEeCCCcEEEEc--CC---ceeEE
Q 008510 3 GV-GIISASHDCTIRLWAL-TGQ-------VLMEMVGHTAIVYSIDSHAS-G-LIVSGSEDRFAKIWK--DG---VCVQS 66 (563)
Q Consensus 3 g~-~l~s~s~DgtIrlWd~-~g~-------~i~~l~gH~~~V~~v~~~p~-g-~l~s~s~D~tvriWd--~~---~~~~~ 66 (563)
+. +|++|+.||+|++|++ .+. ....+.+|...|.+++|+|+ + .+++++.|++|++|| ++ +.+..
T Consensus 193 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~ 272 (430)
T 2xyi_A 193 LNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHT 272 (430)
T ss_dssp STTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEE
T ss_pred CCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeE
Confidence 44 8999999999999999 421 25677899999999999994 5 899999999999999 33 56777
Q ss_pred Ee-cCCcEEEEEEccCCc--EEEEeCCCcEEEEEcCCCceeceeeecccccccc---------eeEEeeccCCceEEEeC
Q 008510 67 IE-HPGCVWDAKFLENGD--IVTACSDGVTRIWTVHSDKVADSLELEAYASELS---------QYKLCRKKVGGLKLEDL 134 (563)
Q Consensus 67 l~-h~~~V~~v~~~p~g~--i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~---------~~~~~~~~~~~i~~~d~ 134 (563)
+. |...|.+++|+|++. +++|+.||.|++||+++... ....+..+...+. ...+++..++.|++||+
T Consensus 273 ~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~-~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~ 351 (430)
T 2xyi_A 273 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL-KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 351 (430)
T ss_dssp EECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS-CSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEG
T ss_pred eecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCC-CeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeC
Confidence 76 888999999999986 78999999999999998431 1222333333322 24566778899999999
Q ss_pred CC
Q 008510 135 PG 136 (563)
Q Consensus 135 ~~ 136 (563)
..
T Consensus 352 ~~ 353 (430)
T 2xyi_A 352 SK 353 (430)
T ss_dssp GG
T ss_pred CC
Confidence 75
No 123
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.62 E-value=1.7e-14 Score=146.39 Aligned_cols=123 Identities=15% Similarity=0.245 Sum_probs=97.4
Q ss_pred EEcC-CCceeEEEecCCCcEEEEEEcCC---C-eEEEEeCCCcEEEEc--C-Ccee-EEEe-cCCcEEEEEEccCCc-EE
Q 008510 17 LWAL-TGQVLMEMVGHTAIVYSIDSHAS---G-LIVSGSEDRFAKIWK--D-GVCV-QSIE-HPGCVWDAKFLENGD-IV 85 (563)
Q Consensus 17 lWd~-~g~~i~~l~gH~~~V~~v~~~p~---g-~l~s~s~D~tvriWd--~-~~~~-~~l~-h~~~V~~v~~~p~g~-i~ 85 (563)
.|+. ..+.+..+.+|.+.|++++|+|+ | .+++|+.|++|++|| + +..+ ..+. |...|++++|+|+++ ++
T Consensus 23 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 102 (368)
T 3mmy_A 23 TDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVF 102 (368)
T ss_dssp CCSSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEE
T ss_pred cCCCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEE
Confidence 3444 56778889999999999999998 6 899999999999999 3 5555 5555 899999999999998 99
Q ss_pred EEeCCCcEEEEEcCCCceeceeeecccccc----------cceeEEeeccCCceEEEeCCCCceeee
Q 008510 86 TACSDGVTRIWTVHSDKVADSLELEAYASE----------LSQYKLCRKKVGGLKLEDLPGLEALQI 142 (563)
Q Consensus 86 sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~----------v~~~~~~~~~~~~i~~~d~~~~~~l~~ 142 (563)
+|+.||.|++||+++++.... ..+... -....+++..++.|++||++..+.+..
T Consensus 103 s~~~dg~v~iwd~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 166 (368)
T 3mmy_A 103 TASCDKTAKMWDLSSNQAIQI---AQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMV 166 (368)
T ss_dssp EEETTSEEEEEETTTTEEEEE---EECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEE
T ss_pred EEcCCCcEEEEEcCCCCceee---ccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEE
Confidence 999999999999999875432 222222 224456777889999999987765433
No 124
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.62 E-value=7.4e-15 Score=165.66 Aligned_cols=174 Identities=22% Similarity=0.296 Sum_probs=130.1
Q ss_pred CCEEEEEECCCcEEEEcC-CCc--eeEEEecCCCcEEEEEEcCC--C-eEEEEeCCCcEEEEc--CC--ceeEEEe-cCC
Q 008510 3 GVGIISASHDCTIRLWAL-TGQ--VLMEMVGHTAIVYSIDSHAS--G-LIVSGSEDRFAKIWK--DG--VCVQSIE-HPG 71 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~-~g~--~i~~l~gH~~~V~~v~~~p~--g-~l~s~s~D~tvriWd--~~--~~~~~l~-h~~ 71 (563)
|++|++|+.||+|++||+ +++ .+..+.+|...|++++|+|+ + .+++|+.||+|++|| .+ .....+. |+.
T Consensus 67 ~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~ 146 (753)
T 3jro_A 67 GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAI 146 (753)
T ss_dssp CSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSS
T ss_pred CCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCC
Confidence 789999999999999999 665 78889999999999999998 8 999999999999999 33 2334444 888
Q ss_pred cEEEEEEcc-------------CCc-EEEEeCCCcEEEEEcCCCcee--ceeeeccccccc-----------ceeEEeec
Q 008510 72 CVWDAKFLE-------------NGD-IVTACSDGVTRIWTVHSDKVA--DSLELEAYASEL-----------SQYKLCRK 124 (563)
Q Consensus 72 ~V~~v~~~p-------------~g~-i~sgs~Dg~Irvwd~~~~~~~--~~~~~~~~~~~v-----------~~~~~~~~ 124 (563)
.|.+++|+| ++. +++|+.||.|++||++++... ....+..+...+ ....+++.
T Consensus 147 ~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s 226 (753)
T 3jro_A 147 GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVS 226 (753)
T ss_dssp CEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEE
T ss_pred ceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEe
Confidence 999999999 466 999999999999999877421 112233333222 35566778
Q ss_pred cCCceEEEeCCCCc------e----------eeecccCCCeEEEEecCCCeEEEEEecc-cceEEEeCcE
Q 008510 125 KVGGLKLEDLPGLE------A----------LQIPGTNAGQTKVVREGDNGVAYSWDMK-EQKWDKLGEV 177 (563)
Q Consensus 125 ~~~~i~~~d~~~~~------~----------l~~~g~~dg~~~l~~~~~~~~~~~wd~~-~~~w~~~g~v 177 (563)
.++.|++||+.... . .....+++|...+..+.+ +.+++|+.. .+.|...+..
T Consensus 227 ~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~D-g~I~vwd~~~~~~~~~~~~~ 295 (753)
T 3jro_A 227 QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGD-NKVTLWKENLEGKWEPAGEV 295 (753)
T ss_dssp SSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSS-SCEECCBCCSSSCCBCCCCB
T ss_pred cCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCC-CEEEEEecCCCCCccccccc
Confidence 89999999997652 1 112245677766666555 557889876 3455554433
No 125
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.62 E-value=3.4e-14 Score=146.37 Aligned_cols=206 Identities=10% Similarity=0.105 Sum_probs=146.2
Q ss_pred CCCEE-EEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eE-EEEeCCCcEEEEc--CCceeEEEecCCcEEE
Q 008510 2 PGVGI-ISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LI-VSGSEDRFAKIWK--DGVCVQSIEHPGCVWD 75 (563)
Q Consensus 2 ~g~~l-~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l-~s~s~D~tvriWd--~~~~~~~l~h~~~V~~ 75 (563)
+|+++ ++++.|++|++||+ +++++..+..|. .+.+++|+|+| .+ ++++.|++|++|| +++.+..+.+...+.+
T Consensus 42 dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~ 120 (391)
T 1l0q_A 42 DGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLG 120 (391)
T ss_dssp TSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEE
T ss_pred CCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcce
Confidence 46655 77879999999999 899988888766 89999999998 55 5666789999999 7788888887778999
Q ss_pred EEEccCCc-E-EEEeCCCcEEEEEcCCCceeceeeecccc----cc-cc-eeEEeeccCCceEEEeCCCCceeeec----
Q 008510 76 AKFLENGD-I-VTACSDGVTRIWTVHSDKVADSLELEAYA----SE-LS-QYKLCRKKVGGLKLEDLPGLEALQIP---- 143 (563)
Q Consensus 76 v~~~p~g~-i-~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~----~~-v~-~~~~~~~~~~~i~~~d~~~~~~l~~~---- 143 (563)
++|+|+|+ + ++++.|+.|++||+++++........... -. -. ...++...++.|.+||+.+.+.....
T Consensus 121 ~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~ 200 (391)
T 1l0q_A 121 LALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEA 200 (391)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS
T ss_pred EEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCC
Confidence 99999998 6 68888999999999988754332221110 01 11 23346677789999999876544322
Q ss_pred ------ccCCCeEEEEecC--CCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCee-eeec
Q 008510 144 ------GTNAGQTKVVREG--DNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPT-RKLP 213 (563)
Q Consensus 144 ------g~~dg~~~l~~~~--~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~-~~~~ 213 (563)
.+++|...++... .+..+++||...+.... .+.++ ..+..+.+ ++|+.+ +...
T Consensus 201 ~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~---------------~~~~~--~~~~~~~~s~dg~~l~~s~~ 263 (391)
T 1l0q_A 201 APSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITA---------------RIPVG--PDPAGIAVTPDGKKVYVALS 263 (391)
T ss_dssp EEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEE---------------EEECC--SSEEEEEECTTSSEEEEEET
T ss_pred CccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEE---------------EEecC--CCccEEEEccCCCEEEEEcC
Confidence 4456665555543 34566778766553211 12222 23677888 788766 5668
Q ss_pred CCCCCChhHHHH
Q 008510 214 YNRSDNPYDAAD 225 (563)
Q Consensus 214 ~n~~~~~w~~a~ 225 (563)
.|+.+.+|++..
T Consensus 264 ~d~~v~v~d~~~ 275 (391)
T 1l0q_A 264 FXNTVSVIDTAT 275 (391)
T ss_dssp TTTEEEEEETTT
T ss_pred CCCEEEEEECCC
Confidence 888888888754
No 126
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.62 E-value=1e-14 Score=146.20 Aligned_cols=136 Identities=17% Similarity=0.191 Sum_probs=108.3
Q ss_pred CCCEEEEEECCCcEEEEcC-CC---------ceeEEEecCCCcEEEEEEcCC--C-eEEEEeCCCcEEEEc--CCceeEE
Q 008510 2 PGVGIISASHDCTIRLWAL-TG---------QVLMEMVGHTAIVYSIDSHAS--G-LIVSGSEDRFAKIWK--DGVCVQS 66 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g---------~~i~~l~gH~~~V~~v~~~p~--g-~l~s~s~D~tvriWd--~~~~~~~ 66 (563)
++++|++|+.||+|++||+ ++ +++..+.+|...|.+++|+|+ + .+++++.|++|++|| ++++++.
T Consensus 70 d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~ 149 (351)
T 3f3f_A 70 YGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRS 149 (351)
T ss_dssp GCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTC
T ss_pred CCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcc
Confidence 4789999999999999999 44 568889999999999999998 8 899999999999999 4443322
Q ss_pred E--------------ecCCcEEEEEEccC---Cc-EEEEeCCCcEEEEEcCCCceeceeeeccccccc-------c----
Q 008510 67 I--------------EHPGCVWDAKFLEN---GD-IVTACSDGVTRIWTVHSDKVADSLELEAYASEL-------S---- 117 (563)
Q Consensus 67 l--------------~h~~~V~~v~~~p~---g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v-------~---- 117 (563)
+ .|...+.+++|+|+ +. +++++.|+.+.+|+...++......+..+...+ .
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~ 229 (351)
T 3f3f_A 150 WTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRW 229 (351)
T ss_dssp CEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCS
T ss_pred ccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCc
Confidence 2 25668999999997 66 999999999999988887654344444443332 2
Q ss_pred -eeEEeeccCCceEEEeCCCC
Q 008510 118 -QYKLCRKKVGGLKLEDLPGL 137 (563)
Q Consensus 118 -~~~~~~~~~~~i~~~d~~~~ 137 (563)
...+++..++.|++||+...
T Consensus 230 ~~~l~s~~~dg~i~iwd~~~~ 250 (351)
T 3f3f_A 230 YQLIATGCKDGRIRIFKITEK 250 (351)
T ss_dssp SEEEEEEETTSCEEEEEEEEC
T ss_pred ceEEEEEcCCCeEEEEeCCCC
Confidence 45667788899999998754
No 127
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.61 E-value=4.8e-14 Score=147.38 Aligned_cols=206 Identities=11% Similarity=0.060 Sum_probs=149.9
Q ss_pred CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eE-EEEeCCCcEEEEc--CCceeEEEecCCcEEEE
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LI-VSGSEDRFAKIWK--DGVCVQSIEHPGCVWDA 76 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l-~s~s~D~tvriWd--~~~~~~~l~h~~~V~~v 76 (563)
+|+.+++++.|++|++||+ +++++.++.+|...+.+++|+|++ .+ ++++.|++|++|| +++.+..+.+...+.++
T Consensus 180 ~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~ 259 (433)
T 3bws_A 180 HNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGL 259 (433)
T ss_dssp GTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEE
T ss_pred CCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEE
Confidence 4678999999999999999 789999999999999999999998 55 5666899999999 77777777776789999
Q ss_pred EEccCCc-EEEEe--------CCCcEEEEEcCCCceeceeeecc----ccccc-c-eeEEeeccCCceEEEeCCCCceee
Q 008510 77 KFLENGD-IVTAC--------SDGVTRIWTVHSDKVADSLELEA----YASEL-S-QYKLCRKKVGGLKLEDLPGLEALQ 141 (563)
Q Consensus 77 ~~~p~g~-i~sgs--------~Dg~Irvwd~~~~~~~~~~~~~~----~~~~v-~-~~~~~~~~~~~i~~~d~~~~~~l~ 141 (563)
+|+|+|+ +++++ .|+.|++||+++++......... ..-.. . ...++...++.+.+||+.+.+...
T Consensus 260 ~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~ 339 (433)
T 3bws_A 260 LLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQK 339 (433)
T ss_dssp EECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEE
T ss_pred EEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEE
Confidence 9999998 77777 58899999999887543321111 11111 1 344556788999999998765443
Q ss_pred e----------cccCCCeEEEEecCC--------------CeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCc
Q 008510 142 I----------PGTNAGQTKVVREGD--------------NGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDY 197 (563)
Q Consensus 142 ~----------~g~~dg~~~l~~~~~--------------~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~ 197 (563)
. ..+++|...++...+ ++.+++||..++.... .+.++ +.
T Consensus 340 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~---------------~~~~~--~~ 402 (433)
T 3bws_A 340 SIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKE---------------FWEAG--NQ 402 (433)
T ss_dssp EEECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEE---------------EEECS--SS
T ss_pred EecCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEE---------------EecCC--CC
Confidence 2 245666655554443 2367778876654321 12221 45
Q ss_pred EEEEEc-CCCCeeeeec-CCCCCChhHHH
Q 008510 198 VFDVDI-GDGEPTRKLP-YNRSDNPYDAA 224 (563)
Q Consensus 198 v~~vd~-~dg~~~~~~~-~n~~~~~w~~a 224 (563)
+..+.+ ++|+.++... .|+.+.+|++.
T Consensus 403 ~~~~~~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 403 PTGLDVSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp EEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred CceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence 788888 8998887665 48888888763
No 128
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.60 E-value=7e-15 Score=151.21 Aligned_cols=100 Identities=15% Similarity=0.168 Sum_probs=88.9
Q ss_pred CCCEEEEEECCC----cEEEEcC-CCc----eeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-
Q 008510 2 PGVGIISASHDC----TIRLWAL-TGQ----VLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE- 68 (563)
Q Consensus 2 ~g~~l~s~s~Dg----tIrlWd~-~g~----~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~- 68 (563)
+|..+++++.|+ ++++|+. .+. ....+.+|...|++++|+|+| .+++|+.|++|+||| ++++++++.
T Consensus 230 dg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~ 309 (365)
T 4h5i_A 230 DDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQ 309 (365)
T ss_dssp TTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETT
T ss_pred CCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecC
Confidence 578899999988 6888998 443 245788999999999999999 999999999999999 788888874
Q ss_pred -cCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCC
Q 008510 69 -HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSD 101 (563)
Q Consensus 69 -h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~ 101 (563)
|...|++|+|+|||+ |++||.|++|||||+...
T Consensus 310 gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 310 AHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp SSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred cccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 999999999999999 999999999999999654
No 129
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.59 E-value=4.2e-14 Score=149.31 Aligned_cols=105 Identities=14% Similarity=0.140 Sum_probs=92.8
Q ss_pred CCCEEEEEECCCcEEEEcC-CCcee----EEEecCCCcEEEEEEcCC---C-eEEEEeCCCcEEEEc--CCceeEEEe--
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVL----MEMVGHTAIVYSIDSHAS---G-LIVSGSEDRFAKIWK--DGVCVQSIE-- 68 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i----~~l~gH~~~V~~v~~~p~---g-~l~s~s~D~tvriWd--~~~~~~~l~-- 68 (563)
+|++|++|+.||.|++|++ +++.. ..+.+|...|++++|+|+ + .+++|+.|++|++|| +++++..+.
T Consensus 160 ~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~ 239 (450)
T 2vdu_B 160 DDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFG 239 (450)
T ss_dssp TSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCC
T ss_pred CCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecC
Confidence 5789999999999999998 55544 378899999999999999 8 899999999999999 777787744
Q ss_pred cCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCceecee
Q 008510 69 HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSL 107 (563)
Q Consensus 69 h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~ 107 (563)
|...|++++|+ +|+ +++|+.|+.|++||+++++.....
T Consensus 240 h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~ 278 (450)
T 2vdu_B 240 HKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTF 278 (450)
T ss_dssp CSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEE
T ss_pred CCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeee
Confidence 88899999999 988 999999999999999998855443
No 130
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.58 E-value=8.7e-14 Score=142.33 Aligned_cols=202 Identities=10% Similarity=0.079 Sum_probs=138.7
Q ss_pred CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC--eEEEEeCCCcEEEEc--CCceeEEEecCCcEEEE
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK--DGVCVQSIEHPGCVWDA 76 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g--~l~s~s~D~tvriWd--~~~~~~~l~h~~~V~~v 76 (563)
||++|++|+.|+ +++|+. +++.+..... ..+..+++.+++ .+++++.|++|++|| +++++..+.++..|.++
T Consensus 30 dg~~la~g~~~~-~~iw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~~~~~v~~v 106 (355)
T 3vu4_A 30 DQSCLILSTLKS-FEIYNVHPVAHIMSQEM--RHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIKVDAPVKDL 106 (355)
T ss_dssp TSSEEEEECSSE-EEEEEETTEEEEEEEEC--SCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEECSSCEEEE
T ss_pred CCCEEEEEcCCE-EEEEecCCcceeeeeec--CCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEECCCceEEE
Confidence 578899888775 799999 6665544432 247778888876 446788899999999 88899999988899999
Q ss_pred EEccCCcEEEEeCCCcEEEEEcCCC-ceeceeee----cccccccceeEEe-eccCCceEEEeCCCCc------------
Q 008510 77 KFLENGDIVTACSDGVTRIWTVHSD-KVADSLEL----EAYASELSQYKLC-RKKVGGLKLEDLPGLE------------ 138 (563)
Q Consensus 77 ~~~p~g~i~sgs~Dg~Irvwd~~~~-~~~~~~~~----~~~~~~v~~~~~~-~~~~~~i~~~d~~~~~------------ 138 (563)
++++++.++ +.|+.|++||+.++ +....... ..+. .....++ +..+|.|++||+....
T Consensus 107 ~~~~~~~~~--~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s--~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~ 182 (355)
T 3vu4_A 107 FLSREFIVV--SYGDVISVFKFGNPWKRITDDIRFGGVCEFS--NGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQK 182 (355)
T ss_dssp EECSSEEEE--EETTEEEEEESSTTCCBSSCCEEEEEEEEEE--TTEEEEEESSCTTCEEEEECCC--------------
T ss_pred EEcCCEEEE--EEcCEEEEEECCCCceeeEEeccCCceEEEE--ccEEEEeCCCcCcEEEEEECCCCCcccccccccccc
Confidence 998875332 35899999999987 43322111 0111 1223333 5788999999998643
Q ss_pred -----eeeec----------ccCCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeec-CcccCcEEEEE
Q 008510 139 -----ALQIP----------GTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILD-GIQYDYVFDVD 202 (563)
Q Consensus 139 -----~l~~~----------g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~-g~~~d~v~~vd 202 (563)
..... .+++|.+.+..+.|+..+.+||..++... ..+. |.+.+.|.++.
T Consensus 183 ~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~---------------~~~~~g~h~~~v~~~~ 247 (355)
T 3vu4_A 183 AILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLV---------------REFRRGLDRADVVDMK 247 (355)
T ss_dssp ----CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEE---------------EEEECTTCCSCEEEEE
T ss_pred ccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEE---------------EEEEcCCCCCcEEEEE
Confidence 22222 44556555555555434677776554321 2233 42337799999
Q ss_pred c-CCCCeeeeecCCCCCChhHHHH
Q 008510 203 I-GDGEPTRKLPYNRSDNPYDAAD 225 (563)
Q Consensus 203 ~-~dg~~~~~~~~n~~~~~w~~a~ 225 (563)
| ++|..+++.+.|+++++|++..
T Consensus 248 ~s~~~~~l~s~s~d~~v~iw~~~~ 271 (355)
T 3vu4_A 248 WSTDGSKLAVVSDKWTLHVFEIFN 271 (355)
T ss_dssp ECTTSCEEEEEETTCEEEEEESSC
T ss_pred ECCCCCEEEEEECCCEEEEEEccC
Confidence 9 9999999999999999999854
No 131
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.55 E-value=2.6e-13 Score=141.78 Aligned_cols=168 Identities=11% Similarity=0.029 Sum_probs=123.8
Q ss_pred CCEEEEEECCCcEEEEcC-CCceeE-----EEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCc
Q 008510 3 GVGIISASHDCTIRLWAL-TGQVLM-----EMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGC 72 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~-~g~~i~-----~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~ 72 (563)
+.++++++.|++|++||+ +++.+. .+.+|...|.+++|+|++ .+++++.|++|++|| +++++..+. |...
T Consensus 134 ~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~ 213 (433)
T 3bws_A 134 TRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKW 213 (433)
T ss_dssp SEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSS
T ss_pred CeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCC
Confidence 567788888999999999 788776 456899999999999999 899999999999999 778888887 7789
Q ss_pred EEEEEEccCCc-E-EEEeCCCcEEEEEcCCCceeceeeeccc----ccc-cceeEEeec--------cCCceEEEeCCCC
Q 008510 73 VWDAKFLENGD-I-VTACSDGVTRIWTVHSDKVADSLELEAY----ASE-LSQYKLCRK--------KVGGLKLEDLPGL 137 (563)
Q Consensus 73 V~~v~~~p~g~-i-~sgs~Dg~Irvwd~~~~~~~~~~~~~~~----~~~-v~~~~~~~~--------~~~~i~~~d~~~~ 137 (563)
+.+++|+|+|+ + ++++.|+.|++||+++++.......... .-. -....+.+. .++.|.+||+.+.
T Consensus 214 ~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~ 293 (433)
T 3bws_A 214 SKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKE 293 (433)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTT
T ss_pred eeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCC
Confidence 99999999998 5 5555899999999998875432221111 101 112333333 3678999999876
Q ss_pred ceeee----------cccCCCeEEEEecCCCeEEEEEecccce
Q 008510 138 EALQI----------PGTNAGQTKVVREGDNGVAYSWDMKEQK 170 (563)
Q Consensus 138 ~~l~~----------~g~~dg~~~l~~~~~~~~~~~wd~~~~~ 170 (563)
+.+.. ..+++|...++....+..+++|+..++.
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~ 336 (433)
T 3bws_A 294 KLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKK 336 (433)
T ss_dssp EEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTE
T ss_pred cEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCc
Confidence 54332 2456776665555555677888876654
No 132
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.49 E-value=1.9e-12 Score=135.39 Aligned_cols=193 Identities=12% Similarity=0.078 Sum_probs=130.7
Q ss_pred CCEEEEEECC------CcEEEEcCCCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCC---cEEEEc--CCceeEEEecC
Q 008510 3 GVGIISASHD------CTIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDR---FAKIWK--DGVCVQSIEHP 70 (563)
Q Consensus 3 g~~l~s~s~D------gtIrlWd~~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~---tvriWd--~~~~~~~l~h~ 70 (563)
+.+++.++.+ ++|++||+++...+.+.+|...|.+++|+|+| .+++++.|+ +|++|| ++++.....|+
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~ 222 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFP 222 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCS
T ss_pred CCEEEEEEecCCCCccceEEEEcCCCCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCC
Confidence 5677777765 79999999888888999999999999999999 899999885 999999 66665444488
Q ss_pred CcEEEEEEccCCc-EE-EEeCCCc--EEEEEcCCCceeceeeeccccccc-------c-e-eEEeeccCC--ceEEEeCC
Q 008510 71 GCVWDAKFLENGD-IV-TACSDGV--TRIWTVHSDKVADSLELEAYASEL-------S-Q-YKLCRKKVG--GLKLEDLP 135 (563)
Q Consensus 71 ~~V~~v~~~p~g~-i~-sgs~Dg~--Irvwd~~~~~~~~~~~~~~~~~~v-------~-~-~~~~~~~~~--~i~~~d~~ 135 (563)
..+.+++|+|+|+ |+ +++.|+. |++||+.+++.. .+..+...+ . . +.+....++ .|.+||+.
T Consensus 223 ~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~---~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~ 299 (415)
T 2hqs_A 223 RHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR---QVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNIN 299 (415)
T ss_dssp SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE---ECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT
T ss_pred CcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEE---eCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECC
Confidence 8999999999998 66 6666655 999999887643 222222111 1 2 222232234 57777887
Q ss_pred CCceeee----------cccCCCeEEEEecCC--CeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc
Q 008510 136 GLEALQI----------PGTNAGQTKVVREGD--NGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI 203 (563)
Q Consensus 136 ~~~~l~~----------~g~~dg~~~l~~~~~--~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~ 203 (563)
+.+.... ..++||...++...+ ...++.|+..++.... +.++. .+..+.+
T Consensus 300 ~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~----------------l~~~~--~~~~~~~ 361 (415)
T 2hqs_A 300 GGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV----------------LSSTF--LDETPSL 361 (415)
T ss_dssp SSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEE----------------CCCSS--SCEEEEE
T ss_pred CCCEEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEE----------------ecCCC--CcCCeEE
Confidence 6543322 245677666555543 2457777776654322 11121 4667777
Q ss_pred -CCCCeeeeecCCC
Q 008510 204 -GDGEPTRKLPYNR 216 (563)
Q Consensus 204 -~dg~~~~~~~~n~ 216 (563)
+||+.++....+.
T Consensus 362 spdg~~l~~~s~~~ 375 (415)
T 2hqs_A 362 APNGTMVIYSSSQG 375 (415)
T ss_dssp CTTSSEEEEEEEET
T ss_pred cCCCCEEEEEEcCC
Confidence 7887776666555
No 133
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.47 E-value=4.7e-13 Score=140.89 Aligned_cols=98 Identities=10% Similarity=0.092 Sum_probs=83.8
Q ss_pred CCCEEE----EEECCCcEEEEcC-CC--------c---eeEEEecCCCcEEEEEEcCC-C-eEEEEeCCCcEEEEc--CC
Q 008510 2 PGVGII----SASHDCTIRLWAL-TG--------Q---VLMEMVGHTAIVYSIDSHAS-G-LIVSGSEDRFAKIWK--DG 61 (563)
Q Consensus 2 ~g~~l~----s~s~DgtIrlWd~-~g--------~---~i~~l~gH~~~V~~v~~~p~-g-~l~s~s~D~tvriWd--~~ 61 (563)
+|++|+ +|+.|++|++||+ ++ + .+..+.+|...|.+++|+|+ + .+++++.||+|++|| ++
T Consensus 103 dg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~ 182 (434)
T 2oit_A 103 DNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTET 182 (434)
T ss_dssp TSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSS
T ss_pred CCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCC
Confidence 477888 8889999999998 43 2 24667789999999999998 5 899999999999999 55
Q ss_pred ceeEEEe-cCCcEEEEEEccCCc-EEEEeCCCcEEEEEcC
Q 008510 62 VCVQSIE-HPGCVWDAKFLENGD-IVTACSDGVTRIWTVH 99 (563)
Q Consensus 62 ~~~~~l~-h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~ 99 (563)
..+.... |...|++++|+|+|+ +++|+.||+|++||.+
T Consensus 183 ~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~ 222 (434)
T 2oit_A 183 VKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT 222 (434)
T ss_dssp EEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT
T ss_pred cceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC
Confidence 4444333 788999999999998 9999999999999998
No 134
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.43 E-value=6.4e-12 Score=136.04 Aligned_cols=170 Identities=10% Similarity=0.032 Sum_probs=128.5
Q ss_pred CCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc----CCceeEEEecCCcEEEE
Q 008510 3 GVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK----DGVCVQSIEHPGCVWDA 76 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd----~~~~~~~l~h~~~V~~v 76 (563)
+..+++++.|++|++||. +++++.++..+.. +++++|+|+| .+++++.|++|++|| +++++.++.+...++++
T Consensus 149 ~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~~p~~v 227 (543)
T 1nir_A 149 NLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSV 227 (543)
T ss_dssp GEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEE
T ss_pred CEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecCCCcceE
Confidence 567899999999999999 8999999984333 8999999999 899999999999999 35677788877789999
Q ss_pred EEcc----CCc-EEEEe-CCCcEEEEEcCCCceeceeeecc--------ccc-cc---------ceeEEeeccCCceEEE
Q 008510 77 KFLE----NGD-IVTAC-SDGVTRIWTVHSDKVADSLELEA--------YAS-EL---------SQYKLCRKKVGGLKLE 132 (563)
Q Consensus 77 ~~~p----~g~-i~sgs-~Dg~Irvwd~~~~~~~~~~~~~~--------~~~-~v---------~~~~~~~~~~~~i~~~ 132 (563)
+|+| +|+ +++++ .+++|++||..+++......... +.. .+ ....++...++.|.+|
T Consensus 228 a~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vv 307 (543)
T 1nir_A 228 ESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLV 307 (543)
T ss_dssp EECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEE
T ss_pred EeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEE
Confidence 9999 998 77776 48999999999887654433321 111 11 1234455667899999
Q ss_pred eCCCCceee------------ecccCCCeEEEEecCCCeEEEEEecccceEEE
Q 008510 133 DLPGLEALQ------------IPGTNAGQTKVVREGDNGVAYSWDMKEQKWDK 173 (563)
Q Consensus 133 d~~~~~~l~------------~~g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~ 173 (563)
|+.....+. ...+++|.+.++.+.....+.+||..+++...
T Consensus 308 d~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~ 360 (543)
T 1nir_A 308 NYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSA 360 (543)
T ss_dssp ECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEE
T ss_pred EecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEE
Confidence 987654332 12567888777766555667779998886543
No 135
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.31 E-value=2e-10 Score=119.89 Aligned_cols=164 Identities=7% Similarity=0.039 Sum_probs=107.5
Q ss_pred CCCEEEEEECCC---cEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEE-EEeCCCc--EEEEc--CCceeEEEe-cC
Q 008510 2 PGVGIISASHDC---TIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIV-SGSEDRF--AKIWK--DGVCVQSIE-HP 70 (563)
Q Consensus 2 ~g~~l~s~s~Dg---tIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~-s~s~D~t--vriWd--~~~~~~~l~-h~ 70 (563)
||+.|++++.|+ +|++||+ +|++. .+.+|...+.+++|+|+| .++ +++.|+. |++|| ++++ ..+. |.
T Consensus 189 dg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~ 266 (415)
T 2hqs_A 189 DGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGR 266 (415)
T ss_dssp TSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCS
T ss_pred CCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCC
Confidence 588999999886 9999999 66664 678899999999999999 666 7777765 88999 4554 4555 77
Q ss_pred CcEEEEEEccCCc-EEEEeC-CC--cEEEEEcCCCceeceee----eccccccc-ceeEEeecc---CCceEEEeCCCCc
Q 008510 71 GCVWDAKFLENGD-IVTACS-DG--VTRIWTVHSDKVADSLE----LEAYASEL-SQYKLCRKK---VGGLKLEDLPGLE 138 (563)
Q Consensus 71 ~~V~~v~~~p~g~-i~sgs~-Dg--~Irvwd~~~~~~~~~~~----~~~~~~~v-~~~~~~~~~---~~~i~~~d~~~~~ 138 (563)
..+.+++|+|+|+ |++++. ++ .|++||+.+++...... .....-.. ....+.... ...|.+||+.+.+
T Consensus 267 ~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~ 346 (415)
T 2hqs_A 267 SNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG 346 (415)
T ss_dssp SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCC
T ss_pred CcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCC
Confidence 8999999999999 887776 44 67788988775321110 00000011 122222222 3579999998765
Q ss_pred eeeec---------ccCCCeEEEEecCCCe--EEEEEecc
Q 008510 139 ALQIP---------GTNAGQTKVVREGDNG--VAYSWDMK 167 (563)
Q Consensus 139 ~l~~~---------g~~dg~~~l~~~~~~~--~~~~wd~~ 167 (563)
..... .++||...++.+.++. .++.|+..
T Consensus 347 ~~~l~~~~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~ 386 (415)
T 2hqs_A 347 VQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD 386 (415)
T ss_dssp EEECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETT
T ss_pred EEEecCCCCcCCeEEcCCCCEEEEEEcCCCccEEEEEECC
Confidence 43332 4455555544443332 35555543
No 136
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.29 E-value=3e-10 Score=113.75 Aligned_cols=217 Identities=9% Similarity=0.024 Sum_probs=139.8
Q ss_pred CCCEEEEEEC-CCcEEEEcC-CCce-eEEEecCCCcEEEEEEcCCC-eEEEEeCCC---cEEEEc--CCceeEEEecCCc
Q 008510 2 PGVGIISASH-DCTIRLWAL-TGQV-LMEMVGHTAIVYSIDSHASG-LIVSGSEDR---FAKIWK--DGVCVQSIEHPGC 72 (563)
Q Consensus 2 ~g~~l~s~s~-DgtIrlWd~-~g~~-i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~---tvriWd--~~~~~~~l~h~~~ 72 (563)
+|+++++++. ++.|++||. +++. ...+..+.....+++|+|+| .++++..++ +|++|| +++.++.+.+...
T Consensus 50 dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~ 129 (331)
T 3u4y_A 50 DCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYD 129 (331)
T ss_dssp SSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTT
T ss_pred CCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCC
Confidence 4666665555 899999999 7777 77888787777669999999 677555553 899999 7788888877667
Q ss_pred EEEEEEccCCc-E-EEEeCCCc-EEEEEcCCCceecee---eecc------cccccc-e-eEEeeccCCceEEEeCCCCc
Q 008510 73 VWDAKFLENGD-I-VTACSDGV-TRIWTVHSDKVADSL---ELEA------YASELS-Q-YKLCRKKVGGLKLEDLPGLE 138 (563)
Q Consensus 73 V~~v~~~p~g~-i-~sgs~Dg~-Irvwd~~~~~~~~~~---~~~~------~~~~v~-~-~~~~~~~~~~i~~~d~~~~~ 138 (563)
..+++|+|+|+ + +++..++. |++|+++........ .+.. ..-... . ..++...++.|.+||+.+.+
T Consensus 130 ~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~ 209 (331)
T 3u4y_A 130 AVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPE 209 (331)
T ss_dssp EEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTT
T ss_pred ccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCc
Confidence 89999999998 5 45556688 999998764322111 1100 000111 2 33445567889999998766
Q ss_pred e---eee----------cccCCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-C
Q 008510 139 A---LQI----------PGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-G 204 (563)
Q Consensus 139 ~---l~~----------~g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~ 204 (563)
. +.. ..++||...++.......+++||..++....+..+..... ..+........+.+ +
T Consensus 210 ~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~sp 282 (331)
T 3u4y_A 210 NITLLNAVGTNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLL-------IDPRPLFGANQMALNK 282 (331)
T ss_dssp SCEEEEEEECSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCC-------CCCGGGTTCCCEEECT
T ss_pred ccceeeeccCCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccc-------cCCCCcccccceEECC
Confidence 5 321 2567888766666555667889988877654443332100 00111011134566 7
Q ss_pred CCCeeeeec-CCCCCChhHHHH
Q 008510 205 DGEPTRKLP-YNRSDNPYDAAD 225 (563)
Q Consensus 205 dg~~~~~~~-~n~~~~~w~~a~ 225 (563)
||+.++... .++.+.+|++..
T Consensus 283 dg~~l~v~~~~~~~v~v~d~~~ 304 (331)
T 3u4y_A 283 TETKLFISANISRELKVFTISG 304 (331)
T ss_dssp TSSEEEEEETTTTEEEEEETTS
T ss_pred CCCEEEEecCCCCcEEEEEecC
Confidence 888765444 455678888753
No 137
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.28 E-value=1.1e-10 Score=126.19 Aligned_cols=209 Identities=12% Similarity=0.087 Sum_probs=139.9
Q ss_pred CCCEEEEEECCCcEEEEcC---CCceeEEEecCCCcEEEEEEcC----CC-eEEEEe-CCCcEEEEc--CCceeEEEec-
Q 008510 2 PGVGIISASHDCTIRLWAL---TGQVLMEMVGHTAIVYSIDSHA----SG-LIVSGS-EDRFAKIWK--DGVCVQSIEH- 69 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~---~g~~i~~l~gH~~~V~~v~~~p----~g-~l~s~s-~D~tvriWd--~~~~~~~l~h- 69 (563)
||+++++++.|++|++||+ +++++.++. +...+++++|+| +| .+++++ .|++|++|| ++++++++..
T Consensus 189 dg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~ 267 (543)
T 1nir_A 189 SGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTR 267 (543)
T ss_dssp TSCEEEEEETTSEEEEEETTSSSCEEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECC
T ss_pred CCCEEEEECCCCeEEEEECcCCCCcEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeeccc
Confidence 6899999999999999999 578888887 455689999999 99 777776 589999999 8888888762
Q ss_pred ----------CC-cEEEEEEccCCc--EEEEeCCCcEEEEEcCCCceeceeeec--cc----c-cccceeEE-eeccCCc
Q 008510 70 ----------PG-CVWDAKFLENGD--IVTACSDGVTRIWTVHSDKVADSLELE--AY----A-SELSQYKL-CRKKVGG 128 (563)
Q Consensus 70 ----------~~-~V~~v~~~p~g~--i~sgs~Dg~Irvwd~~~~~~~~~~~~~--~~----~-~~v~~~~~-~~~~~~~ 128 (563)
+. .+.++.++|++. +++...++.|.+||..+.+......+. .+ . ..-..+.+ +...++.
T Consensus 268 g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~ 347 (543)
T 1nir_A 268 GMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNK 347 (543)
T ss_dssp EECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTE
T ss_pred CcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCe
Confidence 33 799999999876 678888999999999886533211221 11 1 11123333 4556789
Q ss_pred eEEEeCCCCceeeec--c---c---------CC-CeEEEEecCCCeEEEEEecccc-----eEEEeCcEeeCCCCCCCce
Q 008510 129 LKLEDLPGLEALQIP--G---T---------NA-GQTKVVREGDNGVAYSWDMKEQ-----KWDKLGEVVDGPDDGMNRP 188 (563)
Q Consensus 129 i~~~d~~~~~~l~~~--g---~---------~d-g~~~l~~~~~~~~~~~wd~~~~-----~w~~~g~v~~~~~~~~~~~ 188 (563)
|.+||..+++.+... + | ++ |.+.+....++..+.+|+.... .|..+ +
T Consensus 348 v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v-------------~ 414 (543)
T 1nir_A 348 VAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKV-------------A 414 (543)
T ss_dssp EEEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEE-------------E
T ss_pred EEEEECCCCeEEEeeccCCCCCCCCCcccCCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEE-------------E
Confidence 999999887665432 1 2 22 2222222223345566765441 12222 2
Q ss_pred eecCcccCcEEEEEc-CCCCeeeeec-------CCCCCChhHHHH
Q 008510 189 ILDGIQYDYVFDVDI-GDGEPTRKLP-------YNRSDNPYDAAD 225 (563)
Q Consensus 189 ~~~g~~~d~v~~vd~-~dg~~~~~~~-------~n~~~~~w~~a~ 225 (563)
.+.++. +.++.|.+ +||+.++... .+.++.+|+++.
T Consensus 415 ~l~~~g-~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~ 458 (543)
T 1nir_A 415 ELQGQG-GGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKN 458 (543)
T ss_dssp EEECSC-SCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTC
T ss_pred EEEcCC-CCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCC
Confidence 233333 34566777 8888887764 356788888763
No 138
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.24 E-value=1.4e-09 Score=109.64 Aligned_cols=197 Identities=13% Similarity=0.016 Sum_probs=132.4
Q ss_pred CCC-EEEEEECCCcEEEEcC-CCceeEEEecCCCc---------EEEEEEcCCC-eEEEEe--CCCcEEEEc--CCceeE
Q 008510 2 PGV-GIISASHDCTIRLWAL-TGQVLMEMVGHTAI---------VYSIDSHASG-LIVSGS--EDRFAKIWK--DGVCVQ 65 (563)
Q Consensus 2 ~g~-~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~---------V~~v~~~p~g-~l~s~s--~D~tvriWd--~~~~~~ 65 (563)
+|+ .+++++.+++|.+||. +++.+..+..+... +.+++|+|+| .++.++ .++.|.+|| +++.+.
T Consensus 99 dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~ 178 (353)
T 3vgz_A 99 TTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKT 178 (353)
T ss_dssp TTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEE
T ss_pred CCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEE
Confidence 466 4555666899999999 88888888766533 7899999998 555544 578999999 778888
Q ss_pred EEe-cCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeeccc--ccc--------cce-eEEeeccCCceEEE
Q 008510 66 SIE-HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAY--ASE--------LSQ-YKLCRKKVGGLKLE 132 (563)
Q Consensus 66 ~l~-h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~--~~~--------v~~-~~~~~~~~~~i~~~ 132 (563)
.+. +...+.+++|+|+|+ +++++.++.|.+||..+++.......... ... -.. ..+....++.|.+|
T Consensus 179 ~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~ 258 (353)
T 3vgz_A 179 AIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVV 258 (353)
T ss_dssp EECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEE
T ss_pred EecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEE
Confidence 887 556789999999998 88888999999999999875543333110 100 112 33344455899999
Q ss_pred eCCCCceeeec---------ccCCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc
Q 008510 133 DLPGLEALQIP---------GTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI 203 (563)
Q Consensus 133 d~~~~~~l~~~---------g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~ 203 (563)
|..+.+.+... .+++|...++....+..++.||..++..... + ... .....+.+
T Consensus 259 d~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~--~-------------~~~--~~~~~~~~ 321 (353)
T 3vgz_A 259 DTRNGNILAKVAAPESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKT--F-------------DTP--THPNSLAL 321 (353)
T ss_dssp ETTTCCEEEEEECSSCCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEE--E-------------ECC--SEEEEEEE
T ss_pred ECCCCcEEEEEEcCCCceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEE--E-------------ecC--CCCCeEEE
Confidence 99776654322 3456665555555556677888766543211 1 111 23567777
Q ss_pred -CCCCeeeeecCC
Q 008510 204 -GDGEPTRKLPYN 215 (563)
Q Consensus 204 -~dg~~~~~~~~n 215 (563)
+||+.++....+
T Consensus 322 s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 322 SADGKTLYVSVKQ 334 (353)
T ss_dssp CTTSCEEEEEEEC
T ss_pred cCCCCEEEEEEcc
Confidence 778765554433
No 139
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.23 E-value=3.7e-10 Score=113.18 Aligned_cols=206 Identities=12% Similarity=0.092 Sum_probs=124.9
Q ss_pred CCCEEEEEECC-CcEEEEcCC---Cc--eeEEEecCCCcEEEEEEcCCC-eEEEEe-CCCcEEEEc--CCc---eeEEEe
Q 008510 2 PGVGIISASHD-CTIRLWALT---GQ--VLMEMVGHTAIVYSIDSHASG-LIVSGS-EDRFAKIWK--DGV---CVQSIE 68 (563)
Q Consensus 2 ~g~~l~s~s~D-gtIrlWd~~---g~--~i~~l~gH~~~V~~v~~~p~g-~l~s~s-~D~tvriWd--~~~---~~~~l~ 68 (563)
+|+++++++.+ +.|++|+++ ++ .+..+..+. .+.+++|+|+| .+++++ .|+.|++|+ ++. .++.+.
T Consensus 48 dg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~ 126 (343)
T 1ri6_A 48 DKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE 126 (343)
T ss_dssp TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC
T ss_pred CCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccccccccc
Confidence 57888888887 999999983 33 344555544 78899999999 565555 588999999 333 334444
Q ss_pred cCCcEEEEEEccCCc-EEEEe-CCCcEEEEEcCC-Cceecee--eecc--------ccccc-ce-eEEeeccCCceEEEe
Q 008510 69 HPGCVWDAKFLENGD-IVTAC-SDGVTRIWTVHS-DKVADSL--ELEA--------YASEL-SQ-YKLCRKKVGGLKLED 133 (563)
Q Consensus 69 h~~~V~~v~~~p~g~-i~sgs-~Dg~Irvwd~~~-~~~~~~~--~~~~--------~~~~v-~~-~~~~~~~~~~i~~~d 133 (563)
....+.+++|+|+|+ +++++ .|+.|++||+.+ ++..... .... ..-.. .. ..++...++.+.+|+
T Consensus 127 ~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~ 206 (343)
T 1ri6_A 127 GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWE 206 (343)
T ss_dssp CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred CCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEE
Confidence 445799999999998 76666 899999999987 5432211 1110 00011 12 233445678999999
Q ss_pred CCC--Cce-----e--------------eecccCCCeEEEEecCCCeEEEEEecc--cceEEEeCcEeeCCCCCCCceee
Q 008510 134 LPG--LEA-----L--------------QIPGTNAGQTKVVREGDNGVAYSWDMK--EQKWDKLGEVVDGPDDGMNRPIL 190 (563)
Q Consensus 134 ~~~--~~~-----l--------------~~~g~~dg~~~l~~~~~~~~~~~wd~~--~~~w~~~g~v~~~~~~~~~~~~~ 190 (563)
+.. ... . ....+++|...++....+..+++|+.. .+.+..+..+..
T Consensus 207 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~----------- 275 (343)
T 1ri6_A 207 LKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPT----------- 275 (343)
T ss_dssp SSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEEC-----------
T ss_pred ecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecC-----------
Confidence 853 211 1 122456666655555444666777765 333333222211
Q ss_pred cCcccCcEEEEEc-CCCCeeeeec-CCCCCChhHH
Q 008510 191 DGIQYDYVFDVDI-GDGEPTRKLP-YNRSDNPYDA 223 (563)
Q Consensus 191 ~g~~~d~v~~vd~-~dg~~~~~~~-~n~~~~~w~~ 223 (563)
+ ..+..+.+ ++|+.++... .++.+.+|.+
T Consensus 276 --~--~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~ 306 (343)
T 1ri6_A 276 --E--TQPRGFNVDHSGKYLIAAGQKSHHISVYEI 306 (343)
T ss_dssp --S--SSCCCEEECTTSSEEEEECTTTCEEEEEEE
T ss_pred --C--CccceEEECCCCCEEEEecCCCCeEEEEEE
Confidence 1 11445666 6666555555 4556666644
No 140
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.22 E-value=4.4e-10 Score=112.32 Aligned_cols=135 Identities=7% Similarity=-0.016 Sum_probs=96.9
Q ss_pred CEEEEEECCCcEEEEcC-CCceeEEEecCC-C-cEEEEEEcCCC-e-EEEEeCCCcEEEEc--CCceeEEEecCC-----
Q 008510 4 VGIISASHDCTIRLWAL-TGQVLMEMVGHT-A-IVYSIDSHASG-L-IVSGSEDRFAKIWK--DGVCVQSIEHPG----- 71 (563)
Q Consensus 4 ~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~-~-~V~~v~~~p~g-~-l~s~s~D~tvriWd--~~~~~~~l~h~~----- 71 (563)
+++++++.|++|++||. +++.+.++.... . .+.+++|+|+| . +++++.++.|.+|| +++.+..+....
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~ 81 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV 81 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence 57999999999999999 788888876332 2 47889999998 4 56677789999999 778777777433
Q ss_pred -cEEEEEEccCCc-EEEEe------------CCCcEEEEEcCCCceeceeeeccccc----cc-ceeEEeeccCCceEEE
Q 008510 72 -CVWDAKFLENGD-IVTAC------------SDGVTRIWTVHSDKVADSLELEAYAS----EL-SQYKLCRKKVGGLKLE 132 (563)
Q Consensus 72 -~V~~v~~~p~g~-i~sgs------------~Dg~Irvwd~~~~~~~~~~~~~~~~~----~v-~~~~~~~~~~~~i~~~ 132 (563)
.+.+++|+|+|+ +++++ .++.|++||..+++............ .. ....+.. ++.+.+|
T Consensus 82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~i~~~ 159 (337)
T 1pby_B 82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL--GRDLHVM 159 (337)
T ss_dssp ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE--SSSEEEE
T ss_pred ccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe--CCeEEEE
Confidence 678999999997 66665 57999999999887543322211100 01 1112222 4789999
Q ss_pred eCCCCcee
Q 008510 133 DLPGLEAL 140 (563)
Q Consensus 133 d~~~~~~l 140 (563)
|+.+.+..
T Consensus 160 d~~~~~~~ 167 (337)
T 1pby_B 160 DPEAGTLV 167 (337)
T ss_dssp ETTTTEEE
T ss_pred ECCCCcEe
Confidence 98776554
No 141
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.21 E-value=1e-09 Score=109.96 Aligned_cols=167 Identities=13% Similarity=0.078 Sum_probs=112.6
Q ss_pred CCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeC-CCcEEEEc--CCce-eEEEe-cCCcEEE
Q 008510 3 GVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSE-DRFAKIWK--DGVC-VQSIE-HPGCVWD 75 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~-D~tvriWd--~~~~-~~~l~-h~~~V~~ 75 (563)
+..+++++.|++|++||. +++.+..+..+...+ +++|+|+| .++.++. ++.|++|| +++. ...+. +.....+
T Consensus 10 ~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~ 88 (331)
T 3u4y_A 10 NFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMAD 88 (331)
T ss_dssp CEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCC
T ss_pred CEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccc
Confidence 345889999999999999 789888888777777 99999999 5555544 89999999 6666 66666 4445555
Q ss_pred EEEccCCc-EEEEeCCC---cEEEEEcCCCceeceeeeccccc----ccc-e-eEEeeccCCc-eEEEeCCCCcee----
Q 008510 76 AKFLENGD-IVTACSDG---VTRIWTVHSDKVADSLELEAYAS----ELS-Q-YKLCRKKVGG-LKLEDLPGLEAL---- 140 (563)
Q Consensus 76 v~~~p~g~-i~sgs~Dg---~Irvwd~~~~~~~~~~~~~~~~~----~v~-~-~~~~~~~~~~-i~~~d~~~~~~l---- 140 (563)
++|+|+|+ ++++..++ .|++||+.+++............ ... . ..++...++. +.+|++.....+
T Consensus 89 ~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~ 168 (331)
T 3u4y_A 89 VDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTG 168 (331)
T ss_dssp EEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEE
T ss_pred eEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecC
Confidence 99999999 66444442 89999999887544332211111 111 2 3334445567 998887642221
Q ss_pred -----------eecccCCCeEEEEecCCCeEEEEEecccce
Q 008510 141 -----------QIPGTNAGQTKVVREGDNGVAYSWDMKEQK 170 (563)
Q Consensus 141 -----------~~~g~~dg~~~l~~~~~~~~~~~wd~~~~~ 170 (563)
....++||...++....+..+++||..++.
T Consensus 169 ~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~ 209 (331)
T 3u4y_A 169 QEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPE 209 (331)
T ss_dssp EEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTT
T ss_pred CccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCc
Confidence 122566777666665555667788876554
No 142
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.20 E-value=1.4e-09 Score=109.34 Aligned_cols=101 Identities=5% Similarity=-0.081 Sum_probs=81.5
Q ss_pred CCCEEEEEECCCcEEEEcC-CCceeEEEecCC-CcEEEEEEcCCC-e-EEEEeCCCcEEEEc--CCceeEEEecCC----
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHT-AIVYSIDSHASG-L-IVSGSEDRFAKIWK--DGVCVQSIEHPG---- 71 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~-~~V~~v~~~p~g-~-l~s~s~D~tvriWd--~~~~~~~l~h~~---- 71 (563)
++..+++++.|++|++||. +++.++++..+. ..+..++|+|+| . +++++.++.|.+|| +++.+..+....
T Consensus 10 ~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~ 89 (349)
T 1jmx_B 10 GHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGE 89 (349)
T ss_dssp TCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTE
T ss_pred CCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEccccccc
Confidence 3578999999999999999 788888887654 257789999998 4 55666789999999 677777776322
Q ss_pred ---cEEEEEEccCCc-EEEEeCC------------CcEEEEEcCCCc
Q 008510 72 ---CVWDAKFLENGD-IVTACSD------------GVTRIWTVHSDK 102 (563)
Q Consensus 72 ---~V~~v~~~p~g~-i~sgs~D------------g~Irvwd~~~~~ 102 (563)
.+.+++|+|+|+ +++++.+ +.|++||+.+++
T Consensus 90 ~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~ 136 (349)
T 1jmx_B 90 VGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGL 136 (349)
T ss_dssp EEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGG
T ss_pred ccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcc
Confidence 388999999998 7777755 899999998754
No 143
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.19 E-value=4.9e-10 Score=117.76 Aligned_cols=100 Identities=15% Similarity=0.099 Sum_probs=82.8
Q ss_pred CCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc-CCceeEEEe-cC-------C
Q 008510 3 GVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-DGVCVQSIE-HP-------G 71 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd-~~~~~~~l~-h~-------~ 71 (563)
+.+|++|+.||+|++||+ ++..+....+|...|++++|+|+| .+++|+.|++|++|| .++....+. |. .
T Consensus 162 ~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 241 (434)
T 2oit_A 162 PSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTLQEKKVIPCPPFYESDHPV 241 (434)
T ss_dssp TTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTTCCEEEEECCCTTCCTTSCE
T ss_pred CCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccCCcccccccCCcccCCCCce
Confidence 678999999999999999 777777778899999999999999 999999999999999 766666664 32 2
Q ss_pred cEEEEEEccCCcE--EEEeCCCc------EEEEEcCCCc
Q 008510 72 CVWDAKFLENGDI--VTACSDGV------TRIWTVHSDK 102 (563)
Q Consensus 72 ~V~~v~~~p~g~i--~sgs~Dg~------Irvwd~~~~~ 102 (563)
.|.+++|++++.+ +.++.||. +++|+++..+
T Consensus 242 ~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~ 280 (434)
T 2oit_A 242 RVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKE 280 (434)
T ss_dssp EEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCTT
T ss_pred eEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccCC
Confidence 7999999998883 33445543 8999998653
No 144
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.18 E-value=5e-10 Score=109.21 Aligned_cols=197 Identities=15% Similarity=0.101 Sum_probs=121.4
Q ss_pred CCCEEEEEECCCcEEEEcC-C-CceeEEEecCC-CcEEEEEEcCCC-eEEEEe--CCCcEEEEc---CCceeEEEecCCc
Q 008510 2 PGVGIISASHDCTIRLWAL-T-GQVLMEMVGHT-AIVYSIDSHASG-LIVSGS--EDRFAKIWK---DGVCVQSIEHPGC 72 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~-g~~i~~l~gH~-~~V~~v~~~p~g-~l~s~s--~D~tvriWd---~~~~~~~l~h~~~ 72 (563)
+|+++++++ ++.|++||+ + ++......+|. ..+.+++|+|+| .+++++ .|+..+||. .+.....+.+...
T Consensus 52 dg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 130 (297)
T 2ojh_A 52 DGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLMTKNLP 130 (297)
T ss_dssp TSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCEECCSSSS
T ss_pred CCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceEEeecCCC
Confidence 578888887 889999999 6 77776666764 788999999999 888888 445667776 4444566665556
Q ss_pred EEEEEEccCCc-EE-EEeCCCcEEEEEcC--CCceeceeeecccccc-------cc-e-eEEeeccCCceEEEeCC--CC
Q 008510 73 VWDAKFLENGD-IV-TACSDGVTRIWTVH--SDKVADSLELEAYASE-------LS-Q-YKLCRKKVGGLKLEDLP--GL 137 (563)
Q Consensus 73 V~~v~~~p~g~-i~-sgs~Dg~Irvwd~~--~~~~~~~~~~~~~~~~-------v~-~-~~~~~~~~~~i~~~d~~--~~ 137 (563)
+.+++|+|+|+ ++ +++.|+.+++|+++ ++... .+..+... .. . +.+....++.+.+|++. +.
T Consensus 131 ~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~ 207 (297)
T 2ojh_A 131 SYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVET---RLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGS 207 (297)
T ss_dssp EEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEE---ECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSS
T ss_pred ccceEECCCCCEEEEEECCCCceEEEEEECCCCcce---EcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCC
Confidence 99999999998 65 78889999999964 33321 11111111 11 2 23334456788888764 22
Q ss_pred ceeee----------cccCCCeEEEEecCCC----------eEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCc
Q 008510 138 EALQI----------PGTNAGQTKVVREGDN----------GVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDY 197 (563)
Q Consensus 138 ~~l~~----------~g~~dg~~~l~~~~~~----------~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~ 197 (563)
..... ..+++|...++...++ ..++.|+...+....+.... ++. ..
T Consensus 208 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~-------------~~~-~~ 273 (297)
T 2ojh_A 208 SVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLF-------------GGQ-GT 273 (297)
T ss_dssp CEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEE-------------EST-TT
T ss_pred CcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccC-------------CCC-cc
Confidence 22111 2455666555444321 33666666554332222111 222 34
Q ss_pred EEEEEc-CCCCeeeeecCCC
Q 008510 198 VFDVDI-GDGEPTRKLPYNR 216 (563)
Q Consensus 198 v~~vd~-~dg~~~~~~~~n~ 216 (563)
+..+.+ ++|+.++....+.
T Consensus 274 ~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 274 MNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp SCSCCBCTTSSEEEEEEECC
T ss_pred cccceECCCCCEEEEEEecc
Confidence 556667 7787777666554
No 145
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.16 E-value=4e-10 Score=126.24 Aligned_cols=101 Identities=11% Similarity=0.100 Sum_probs=81.4
Q ss_pred CCCEEEEEEC-CC-----cEEEEcC-CCceeEEEecCCC------------------------cEEEEEEcCCC-eEEEE
Q 008510 2 PGVGIISASH-DC-----TIRLWAL-TGQVLMEMVGHTA------------------------IVYSIDSHASG-LIVSG 49 (563)
Q Consensus 2 ~g~~l~s~s~-Dg-----tIrlWd~-~g~~i~~l~gH~~------------------------~V~~v~~~p~g-~l~s~ 49 (563)
||++|++++. |+ +|++||+ +|+....+..|.. .|.+++|+||| .++++
T Consensus 47 dG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~ 126 (741)
T 2ecf_A 47 DGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPDAQRLLFP 126 (741)
T ss_dssp TSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECTTSSEEEEE
T ss_pred CCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCCCCEEEEE
Confidence 6899999998 88 9999999 7777777765543 37899999999 78887
Q ss_pred eCCCcEEEEc-CCc---eeEEEe-cCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCcee
Q 008510 50 SEDRFAKIWK-DGV---CVQSIE-HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVA 104 (563)
Q Consensus 50 s~D~tvriWd-~~~---~~~~l~-h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~ 104 (563)
+. ++|++|| .+. ....+. |...+.+++|+|||+ |+.++ ++.|++||+.+++..
T Consensus 127 ~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~ 185 (741)
T 2ecf_A 127 LG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQM 185 (741)
T ss_dssp ET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEE
T ss_pred eC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEE
Confidence 76 9999999 433 444454 777999999999999 77665 679999999987643
No 146
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.15 E-value=1.2e-09 Score=110.47 Aligned_cols=206 Identities=12% Similarity=0.133 Sum_probs=122.1
Q ss_pred CCCEEEEEEC---CCcEEEEcC-CCc--eeEEEecCCCcEEEEEEcCCC-eEEEEe-CCCcEEEEc-C--Cce--eEEEe
Q 008510 2 PGVGIISASH---DCTIRLWAL-TGQ--VLMEMVGHTAIVYSIDSHASG-LIVSGS-EDRFAKIWK-D--GVC--VQSIE 68 (563)
Q Consensus 2 ~g~~l~s~s~---DgtIrlWd~-~g~--~i~~l~gH~~~V~~v~~~p~g-~l~s~s-~D~tvriWd-~--~~~--~~~l~ 68 (563)
+|+ +++++. ++.|++|++ +|+ .+..+..|...+..++|+|+| .+++++ .+++|++|+ . +.. +..+.
T Consensus 50 dg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~ 128 (347)
T 3hfq_A 50 KDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQ 128 (347)
T ss_dssp TCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEE
T ss_pred CCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceee
Confidence 456 555544 689999999 554 455666688888999999999 677776 789999999 2 332 33333
Q ss_pred cC----------CcEEEEEEccCCc-EEEEeCCCcEEEEEcC-CCceeceeeeccc--------cccc-ce-eEEeeccC
Q 008510 69 HP----------GCVWDAKFLENGD-IVTACSDGVTRIWTVH-SDKVADSLELEAY--------ASEL-SQ-YKLCRKKV 126 (563)
Q Consensus 69 h~----------~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~-~~~~~~~~~~~~~--------~~~v-~~-~~~~~~~~ 126 (563)
+. ..+.+++|+|+|+ ++++..++.|++|++. +++......+... .-.. .. ..++...+
T Consensus 129 ~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~ 208 (347)
T 3hfq_A 129 HSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELS 208 (347)
T ss_dssp CCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTT
T ss_pred cCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCC
Confidence 32 1488999999999 5666678899999998 4542221111110 0011 12 33345566
Q ss_pred CceEEEeCCC--Cce--e-----------------eecccCCCeEEEEecCCCeEEEEEecc-cceEEEeCcEeeCCCCC
Q 008510 127 GGLKLEDLPG--LEA--L-----------------QIPGTNAGQTKVVREGDNGVAYSWDMK-EQKWDKLGEVVDGPDDG 184 (563)
Q Consensus 127 ~~i~~~d~~~--~~~--l-----------------~~~g~~dg~~~l~~~~~~~~~~~wd~~-~~~w~~~g~v~~~~~~~ 184 (563)
+.+.+|++.. ... + ....++||.+.++.......+.+|+.. .+.+..+..+..
T Consensus 209 ~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~----- 283 (347)
T 3hfq_A 209 SQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQIST----- 283 (347)
T ss_dssp TEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEEC-----
T ss_pred CEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEec-----
Confidence 7888998763 221 1 122566776654544434556667754 223332222211
Q ss_pred CCceeecCcccCcEEEEEc-CCCCeeeeecCC-CCCChhH
Q 008510 185 MNRPILDGIQYDYVFDVDI-GDGEPTRKLPYN-RSDNPYD 222 (563)
Q Consensus 185 ~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n-~~~~~w~ 222 (563)
+. ..+..+.+ +||+.++....+ ..+.+|.
T Consensus 284 --------~~-~~~~~~~~spdg~~l~v~~~~~~~v~v~~ 314 (347)
T 3hfq_A 284 --------EG-DFPRDFDLDPTEAFVVVVNQNTDNATLYA 314 (347)
T ss_dssp --------SS-SCCCEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred --------CC-CCcCeEEECCCCCEEEEEEcCCCcEEEEE
Confidence 11 23456666 777766655543 5566664
No 147
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.14 E-value=1.7e-09 Score=108.23 Aligned_cols=211 Identities=11% Similarity=0.105 Sum_probs=125.5
Q ss_pred EEEEEECCCcEEEEcCC--Cc--eeEEEecCCCcEEEEEEcCCC-eEEEEeCC-CcEEEEc-C--C-c--eeEEEecCCc
Q 008510 5 GIISASHDCTIRLWALT--GQ--VLMEMVGHTAIVYSIDSHASG-LIVSGSED-RFAKIWK-D--G-V--CVQSIEHPGC 72 (563)
Q Consensus 5 ~l~s~s~DgtIrlWd~~--g~--~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D-~tvriWd-~--~-~--~~~~l~h~~~ 72 (563)
.+++++.|++|++|+++ ++ .+.. ..|...+.+++|+|+| .+++++.+ +.|++|+ + . + .+..+.....
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 85 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQV-VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGS 85 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEE-EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSC
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeee-EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCC
Confidence 45555889999999983 53 3333 3577889999999999 77777776 9999999 4 2 3 2334444458
Q ss_pred EEEEEEccCCc-EEEEe-CCCcEEEEEcCCCceec-eeeecccc--c----cc-ceeEEee-ccCCceEEEeCCC-Ccee
Q 008510 73 VWDAKFLENGD-IVTAC-SDGVTRIWTVHSDKVAD-SLELEAYA--S----EL-SQYKLCR-KKVGGLKLEDLPG-LEAL 140 (563)
Q Consensus 73 V~~v~~~p~g~-i~sgs-~Dg~Irvwd~~~~~~~~-~~~~~~~~--~----~v-~~~~~~~-~~~~~i~~~d~~~-~~~l 140 (563)
+.+++|+|+|+ +++++ .++.|++||+..++... ...+.... . .. ....+.. ..++.+.+||+.. ....
T Consensus 86 ~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~ 165 (343)
T 1ri6_A 86 LTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLV 165 (343)
T ss_dssp CSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEE
T ss_pred CcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCcee
Confidence 89999999998 65555 48899999995332111 11111111 0 11 1233333 3778999999876 3221
Q ss_pred -------e---------ecccCCCeEEEEecCCCeEEEEEecc--cceEEEeCcEeeCCCCCCCceeecCcccCcEEEEE
Q 008510 141 -------Q---------IPGTNAGQTKVVREGDNGVAYSWDMK--EQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVD 202 (563)
Q Consensus 141 -------~---------~~g~~dg~~~l~~~~~~~~~~~wd~~--~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd 202 (563)
. ...+++|...++.......+.+|+.. .+.+.....+...... +.+ ...+..+.
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~------~~~--~~~~~~i~ 237 (343)
T 1ri6_A 166 AQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPEN------FSD--TRWAADIH 237 (343)
T ss_dssp EEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTT------CCS--CCCEEEEE
T ss_pred eecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCcc------ccc--cCCccceE
Confidence 0 11455666555555444556677763 2333222111111000 111 13456777
Q ss_pred c-CCCCeee-eecCCCCCChhHHH
Q 008510 203 I-GDGEPTR-KLPYNRSDNPYDAA 224 (563)
Q Consensus 203 ~-~dg~~~~-~~~~n~~~~~w~~a 224 (563)
+ ++|+.++ ....+..+.+|++.
T Consensus 238 ~s~dg~~l~v~~~~~~~i~v~d~~ 261 (343)
T 1ri6_A 238 ITPDGRHLYACDRTASLITVFSVS 261 (343)
T ss_dssp ECTTSSEEEEEETTTTEEEEEEEC
T ss_pred ECCCCCEEEEEecCCCEEEEEEEc
Confidence 8 7887666 44467777888764
No 148
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.11 E-value=1.9e-09 Score=104.97 Aligned_cols=199 Identities=9% Similarity=0.053 Sum_probs=113.8
Q ss_pred EECCCcEEEEcCCCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--C-CceeEEEe-c-CCcEEEEEEccCC
Q 008510 9 ASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--D-GVCVQSIE-H-PGCVWDAKFLENG 82 (563)
Q Consensus 9 ~s~DgtIrlWd~~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~-~~~~~~l~-h-~~~V~~v~~~p~g 82 (563)
++.|++|++||+.+.....+..|...|.+++|+|+| .+++++ ++.|++|| + ++...... + ...+.+++|+|+|
T Consensus 18 ~~~~~~i~~~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg 96 (297)
T 2ojh_A 18 GSMRSSIEIFNIRTRKMRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDG 96 (297)
T ss_dssp CCCCEEEEEEETTTTEEEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTS
T ss_pred CCcceeEEEEeCCCCceeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCC
Confidence 467899999999433344667799999999999999 777776 88999999 5 56655554 4 3689999999999
Q ss_pred c-EEEEe--CCCcEEEEEc--CCCceeceee---ec--ccccccceeEEeeccCCceEEEeC--CCCceeeecccCCCeE
Q 008510 83 D-IVTAC--SDGVTRIWTV--HSDKVADSLE---LE--AYASELSQYKLCRKKVGGLKLEDL--PGLEALQIPGTNAGQT 150 (563)
Q Consensus 83 ~-i~sgs--~Dg~Irvwd~--~~~~~~~~~~---~~--~~~~~v~~~~~~~~~~~~i~~~d~--~~~~~l~~~g~~dg~~ 150 (563)
+ +++++ .++.+++|.+ .+++...... .. .+...-..+.+....++.+++|++ .+........+.....
T Consensus 97 ~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 176 (297)
T 2ojh_A 97 ALYAISDKVEFGKSAIYLLPSTGGTPRLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRND 176 (297)
T ss_dssp SEEEEEECTTTSSCEEEEEETTCCCCEECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEE
T ss_pred CEEEEEEeCCCCcceEEEEECCCCceEEeecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccc
Confidence 9 88887 3345555554 4443211100 00 111111123335666788888885 3333332223323333
Q ss_pred EEEecCCCeEEEEE---ecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeeeecCCC
Q 008510 151 KVVREGDNGVAYSW---DMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRKLPYNR 216 (563)
Q Consensus 151 ~l~~~~~~~~~~~w---d~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~ 216 (563)
.+..++++..++.- +.....|..-. .+.....+.++. ..+..+.+ ++|+.++....+.
T Consensus 177 ~~~~s~dg~~l~~~~~~~~~~~i~~~~~-------~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~ 238 (297)
T 2ojh_A 177 GPDYSPDGRWIYFNSSRTGQMQIWRVRV-------DGSSVERITDSA-YGDWFPHPSPSGDKVVFVSYDA 238 (297)
T ss_dssp EEEECTTSSEEEEEECTTSSCEEEEEET-------TSSCEEECCCCS-EEEEEEEECTTSSEEEEEEEET
T ss_pred cceECCCCCEEEEEecCCCCccEEEECC-------CCCCcEEEecCC-cccCCeEECCCCCEEEEEEcCC
Confidence 33333333321111 11122222110 001122233333 45778888 8998888777663
No 149
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.02 E-value=2.1e-08 Score=100.89 Aligned_cols=158 Identities=5% Similarity=0.017 Sum_probs=109.3
Q ss_pred CCCEEEEEE--CCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEec-----C
Q 008510 2 PGVGIISAS--HDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIEH-----P 70 (563)
Q Consensus 2 ~g~~l~s~s--~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~h-----~ 70 (563)
+|++++.++ .++.|.+||. +++.+..+..+...+.+++|+|+| .++.++.|+.+.+|| +++.+..+.. .
T Consensus 151 dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~ 230 (353)
T 3vgz_A 151 ATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKE 230 (353)
T ss_dssp TTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSC
T ss_pred CCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCC
Confidence 466666665 4889999999 788888887677778999999999 888889999999999 7777777662 3
Q ss_pred CcEEEEEEccCCc-EEEEe-CCCcEEEEEcCCCceeceeeecccc-----cccceeEEeeccCCceEEEeCCCCceeeec
Q 008510 71 GCVWDAKFLENGD-IVTAC-SDGVTRIWTVHSDKVADSLELEAYA-----SELSQYKLCRKKVGGLKLEDLPGLEALQIP 143 (563)
Q Consensus 71 ~~V~~v~~~p~g~-i~sgs-~Dg~Irvwd~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~i~~~d~~~~~~l~~~ 143 (563)
..+.+++|+|+|+ +++++ .++.|.+||..+++.........-. ..-....++...++.|.+||..+.+.+...
T Consensus 231 ~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~ 310 (353)
T 3vgz_A 231 HFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTF 310 (353)
T ss_dssp CCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSCCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred cccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEE
Confidence 4688999999998 65554 4599999999988755433322110 001123344456788888888776655443
Q ss_pred ccCCCeEEEEecCCCe
Q 008510 144 GTNAGQTKVVREGDNG 159 (563)
Q Consensus 144 g~~dg~~~l~~~~~~~ 159 (563)
........+..++++.
T Consensus 311 ~~~~~~~~~~~s~dg~ 326 (353)
T 3vgz_A 311 DTPTHPNSLALSADGK 326 (353)
T ss_dssp ECCSEEEEEEECTTSC
T ss_pred ecCCCCCeEEEcCCCC
Confidence 2222333444444443
No 150
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.00 E-value=6.8e-09 Score=121.17 Aligned_cols=178 Identities=13% Similarity=0.037 Sum_probs=123.7
Q ss_pred CCCEEEEEECCCcEEEEcCCCceeEEEecCCC-cEEEEEEcCCC-eEEEEeCCCcEE-EEc-CCceeEEEe-cCCcEEEE
Q 008510 2 PGVGIISASHDCTIRLWALTGQVLMEMVGHTA-IVYSIDSHASG-LIVSGSEDRFAK-IWK-DGVCVQSIE-HPGCVWDA 76 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~~g~~i~~l~gH~~-~V~~v~~~p~g-~l~s~s~D~tvr-iWd-~~~~~~~l~-h~~~V~~v 76 (563)
||+++++++ ++.|++|+..+.....+.+|.. .+.+++|+ +| .++.++.+..+. +|+ .+.....+. |...+.++
T Consensus 307 dG~~la~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~ 384 (1045)
T 1k32_A 307 DGDLIAFVS-RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAM 384 (1045)
T ss_dssp GGGCEEEEE-TTEEEEECTTSSBEEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEE
T ss_pred CCCEEEEEE-cCEEEEEcCCCCceEEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceEecCCccceeee
Confidence 467788887 8899999994444455778888 89999999 98 888888888888 888 444444444 66799999
Q ss_pred EEccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccccceeEEeeccCCceEEEeCCCCceeeecccCCCeEEEEec
Q 008510 77 KFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLCRKKVGGLKLEDLPGLEALQIPGTNAGQTKVVRE 155 (563)
Q Consensus 77 ~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~d~~~~~~l~~~g~~dg~~~l~~~ 155 (563)
+|+|+|+ +++++.|+.|++||+.+++.... ..-..........++||...++..
T Consensus 385 ~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~-------------------------~~~~~~~v~~~~~SpDG~~la~~~ 439 (1045)
T 1k32_A 385 GVDRNGKFAVVANDRFEIMTVDLETGKPTVI-------------------------ERSREAMITDFTISDNSRFIAYGF 439 (1045)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTTCCEEEE-------------------------EECSSSCCCCEEECTTSCEEEEEE
T ss_pred EECCCCCEEEEECCCCeEEEEECCCCceEEe-------------------------ccCCCCCccceEECCCCCeEEEEe
Confidence 9999999 89999999999999998863211 101111122334677887776655
Q ss_pred CCC---------eEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeeeecCCCCCChhHH
Q 008510 156 GDN---------GVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRKLPYNRSDNPYDA 223 (563)
Q Consensus 156 ~~~---------~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~~~~~w~~ 223 (563)
.++ ..+++||...+.... +.++. +.+..+.| +||+.++....+.....|..
T Consensus 440 ~~~~~~~~~~~~~~i~l~d~~~g~~~~----------------l~~~~-~~~~~~~~spdG~~l~~~s~~~~~~~~~~ 500 (1045)
T 1k32_A 440 PLKHGETDGYVMQAIHVYDMEGRKIFA----------------ATTEN-SHDYAPAFDADSKNLYYLSYRSLDPSPDR 500 (1045)
T ss_dssp EECSSTTCSCCEEEEEEEETTTTEEEE----------------CSCSS-SBEEEEEECTTSCEEEEEESCCCCCEECS
T ss_pred cCccccccCCCCCeEEEEECCCCcEEE----------------eeCCC-cccCCceEcCCCCEEEEEecccCCcCcch
Confidence 432 468899987654221 11222 34667777 88887777776666655543
No 151
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.00 E-value=4.8e-09 Score=117.06 Aligned_cols=88 Identities=9% Similarity=-0.041 Sum_probs=66.2
Q ss_pred CCCEEEEEECC---------CcEEEEcC-CCceeEEEe---cCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeE
Q 008510 2 PGVGIISASHD---------CTIRLWAL-TGQVLMEMV---GHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQ 65 (563)
Q Consensus 2 ~g~~l~s~s~D---------gtIrlWd~-~g~~i~~l~---gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~ 65 (563)
||+++++++.| ++|++||+ ++++ ..+. +|...+.+++|+||| .++.++. +.|++|+ +++..+
T Consensus 71 Dg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~ 148 (723)
T 1xfd_A 71 DREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIR 148 (723)
T ss_dssp TSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEE
T ss_pred CCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEE
Confidence 68899999885 77889999 5655 3443 455568999999999 8888875 7999999 556555
Q ss_pred EEe-cCCcE------------------EEEEEccCCc-EEEEeCCC
Q 008510 66 SIE-HPGCV------------------WDAKFLENGD-IVTACSDG 91 (563)
Q Consensus 66 ~l~-h~~~V------------------~~v~~~p~g~-i~sgs~Dg 91 (563)
... +...+ .+++|+|||+ |++++.|+
T Consensus 149 ~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~ 194 (723)
T 1xfd_A 149 VVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAIND 194 (723)
T ss_dssp EECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEEC
T ss_pred EecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECC
Confidence 444 33333 7899999999 88877553
No 152
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.00 E-value=8.3e-09 Score=115.52 Aligned_cols=88 Identities=10% Similarity=0.040 Sum_probs=68.3
Q ss_pred CCCEEEEEECCCcEEEEcCCCc---eeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCc--
Q 008510 2 PGVGIISASHDCTIRLWALTGQ---VLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGC-- 72 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~~g~---~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~-- 72 (563)
||++|++++. ++|++||+.+. .+..+..|...+.+++|+||| .++.++ ++.|++|| +++..+... +...
T Consensus 119 Dg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~~~~ 196 (741)
T 2ecf_A 119 DAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGSTTIG 196 (741)
T ss_dssp TSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCCSSEE
T ss_pred CCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCcccee
Confidence 6788999986 99999999433 566788899999999999999 787777 56999999 444433332 2222
Q ss_pred --------------EEEEEEccCCc-EEEEeCCC
Q 008510 73 --------------VWDAKFLENGD-IVTACSDG 91 (563)
Q Consensus 73 --------------V~~v~~~p~g~-i~sgs~Dg 91 (563)
+.+++|+|||+ |++++.|+
T Consensus 197 ~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~ 230 (741)
T 2ecf_A 197 NGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDE 230 (741)
T ss_dssp ESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEEC
T ss_pred ccccceeeeeccccccceEECCCCCEEEEEEEcC
Confidence 47899999999 88887776
No 153
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=98.96 E-value=3.1e-09 Score=118.63 Aligned_cols=99 Identities=13% Similarity=0.113 Sum_probs=79.0
Q ss_pred CCCEEEEEECCCcEEEEcC-CCceeEEEecCCC---cEEEEEEcCCC-eEEEEeCC---------CcEEEEc--CCceeE
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTA---IVYSIDSHASG-LIVSGSED---------RFAKIWK--DGVCVQ 65 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~---~V~~v~~~p~g-~l~s~s~D---------~tvriWd--~~~~~~ 65 (563)
||+++++ +.||+|++||+ +|++...+.+|.. .|.+++|+||| .+++++.| +.+++|| ++++ +
T Consensus 27 dg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~ 104 (723)
T 1xfd_A 27 DTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-Q 104 (723)
T ss_dssp SSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-E
T ss_pred CCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-E
Confidence 4665655 78999999999 7888888887775 49999999999 88888875 6788999 5554 4
Q ss_pred EEe----cCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCce
Q 008510 66 SIE----HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKV 103 (563)
Q Consensus 66 ~l~----h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~ 103 (563)
.+. |...+.+++|+|||+ |+.++. +.|++||..+++.
T Consensus 105 ~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~ 146 (723)
T 1xfd_A 105 SLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQA 146 (723)
T ss_dssp ECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCC
T ss_pred eccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCce
Confidence 454 333589999999998 777765 8999999988764
No 154
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=98.96 E-value=1.2e-08 Score=119.23 Aligned_cols=101 Identities=11% Similarity=0.067 Sum_probs=85.7
Q ss_pred CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCC----------cEEEEc-CCceeEEEe
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDR----------FAKIWK-DGVCVQSIE 68 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~----------tvriWd-~~~~~~~l~ 68 (563)
||+++++++.|++|++||+ +|++...+.+|...+.+++|+||| .+++++.++ +|++|| .+..+..+.
T Consensus 389 DG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~ 468 (1045)
T 1k32_A 389 NGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAAT 468 (1045)
T ss_dssp TSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECS
T ss_pred CCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEee
Confidence 6889999999999999999 788877777999999999999999 787777654 899999 443355665
Q ss_pred -cCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCc
Q 008510 69 -HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDK 102 (563)
Q Consensus 69 -h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~ 102 (563)
|...+.+++|+|+|+ |+.++.++..++|+.....
T Consensus 469 ~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~ 504 (1045)
T 1k32_A 469 TENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLN 504 (1045)
T ss_dssp CSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSC
T ss_pred CCCcccCCceEcCCCCEEEEEecccCCcCcchhccc
Confidence 777899999999999 8999999999999876443
No 155
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=98.92 E-value=2e-08 Score=111.78 Aligned_cols=99 Identities=7% Similarity=0.026 Sum_probs=76.1
Q ss_pred CCCEEEEEECCCcEEEEcC-C-----CceeEEEecCCCc--------------EEEEEEcCCC-eEEEEe----------
Q 008510 2 PGVGIISASHDCTIRLWAL-T-----GQVLMEMVGHTAI--------------VYSIDSHASG-LIVSGS---------- 50 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~-----g~~i~~l~gH~~~--------------V~~v~~~p~g-~l~s~s---------- 50 (563)
||++|+++ .|++|++|++ + ++.......+... +.+++|+||| .+++++
T Consensus 131 dG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~ 209 (706)
T 2z3z_A 131 VGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTP 209 (706)
T ss_dssp TSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEE
T ss_pred CCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEE
Confidence 57888885 6899999999 6 7766544444443 4789999999 888887
Q ss_pred -----------------------CCCcEEEEc--CCceeEEEe---cCCcEEEEEEccCCc-EEEEeCCC-----cEEEE
Q 008510 51 -----------------------EDRFAKIWK--DGVCVQSIE---HPGCVWDAKFLENGD-IVTACSDG-----VTRIW 96 (563)
Q Consensus 51 -----------------------~D~tvriWd--~~~~~~~l~---h~~~V~~v~~~p~g~-i~sgs~Dg-----~Irvw 96 (563)
.+..|++|| +++...... |...+.+++|+|||+ |++++.|+ .|++|
T Consensus 210 ~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~ 289 (706)
T 2z3z_A 210 IVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAY 289 (706)
T ss_dssp EEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEE
T ss_pred eeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEE
Confidence 446799999 444433331 456899999999999 88877776 89999
Q ss_pred EcCCC
Q 008510 97 TVHSD 101 (563)
Q Consensus 97 d~~~~ 101 (563)
|..++
T Consensus 290 d~~~g 294 (706)
T 2z3z_A 290 DAETG 294 (706)
T ss_dssp ETTTC
T ss_pred ECCCC
Confidence 99988
No 156
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=98.89 E-value=1.3e-08 Score=113.27 Aligned_cols=94 Identities=11% Similarity=0.012 Sum_probs=69.9
Q ss_pred CCEEEEEECCCcEEEEcC-CCcee-EEEecCC-----------------CcEEEEEEcCCCeEEEEeCCCcEEEEc--CC
Q 008510 3 GVGIISASHDCTIRLWAL-TGQVL-MEMVGHT-----------------AIVYSIDSHASGLIVSGSEDRFAKIWK--DG 61 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~-~g~~i-~~l~gH~-----------------~~V~~v~~~p~g~l~s~s~D~tvriWd--~~ 61 (563)
|+.+++++.|+ | +||+ +|+.+ ..+..|. ..|.+++|+|++.++.+ .|+++++|| ++
T Consensus 35 g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd~~~~~~-~~~~i~~~d~~~~ 111 (706)
T 2z3z_A 35 GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGRGLVVLF-TQGGLVGFDMLAR 111 (706)
T ss_dssp TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTTTEEEEE-ETTEEEEEETTTT
T ss_pred CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCCCeEEEE-ECCEEEEEECCCC
Confidence 56788888888 8 9999 77763 5555544 46999999999744433 469999999 55
Q ss_pred ceeEEEecCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCC
Q 008510 62 VCVQSIEHPGCVWDAKFLENGD-IVTACSDGVTRIWTVHS 100 (563)
Q Consensus 62 ~~~~~l~h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~ 100 (563)
+..+...+...+.+++|+|||+ |++ +.|+.|++||+.+
T Consensus 112 ~~~~l~~~~~~~~~~~~SpdG~~la~-~~~~~i~v~~~~~ 150 (706)
T 2z3z_A 112 KVTYLFDTNEETASLDFSPVGDRVAY-VRNHNLYIARGGK 150 (706)
T ss_dssp EEEEEECCTTCCTTCEECTTSSEEEE-EETTEEEEEECBC
T ss_pred ceEEccCCcccccCCcCCCCCCEEEE-EECCeEEEEecCc
Confidence 5544444777899999999998 666 5789999999988
No 157
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=98.88 E-value=8.6e-09 Score=115.07 Aligned_cols=100 Identities=16% Similarity=0.129 Sum_probs=76.3
Q ss_pred CCCEEEEEECCCcEEEEcC-CCceeEEEecCCC---cEEEEEEcCCC-eEEEEeC---------CCcEEEEc--CCceeE
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTA---IVYSIDSHASG-LIVSGSE---------DRFAKIWK--DGVCVQ 65 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~---~V~~v~~~p~g-~l~s~s~---------D~tvriWd--~~~~~~ 65 (563)
+| .++..+.|++|++||+ +|++...+.+|.. .+.+++|+||| .+++++. |++|++|| +++.+.
T Consensus 26 dg-~~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~ 104 (719)
T 1z68_A 26 GQ-EYLHQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVR 104 (719)
T ss_dssp SS-EEEEECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC
T ss_pred CC-eEEEEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCcccc
Confidence 35 4555667999999999 7777777766654 38999999999 7887776 78999999 454421
Q ss_pred EEecCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCce
Q 008510 66 SIEHPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKV 103 (563)
Q Consensus 66 ~l~h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~ 103 (563)
....+..+.+++|+|||+ |+.+. |+.|++||+.+++.
T Consensus 105 ~~~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~ 142 (719)
T 1z68_A 105 GNELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPP 142 (719)
T ss_dssp SSCCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCC
T ss_pred ceecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCc
Confidence 112345789999999999 77764 88999999987763
No 158
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=98.86 E-value=2.6e-07 Score=93.04 Aligned_cols=99 Identities=12% Similarity=0.105 Sum_probs=71.6
Q ss_pred CCCEEEEEE-CCCcEEEEcC--CCc--eeEEEec---------CCCcEEEEEEcCCC-eEEEEeCCCcEEEEc-C--Cce
Q 008510 2 PGVGIISAS-HDCTIRLWAL--TGQ--VLMEMVG---------HTAIVYSIDSHASG-LIVSGSEDRFAKIWK-D--GVC 63 (563)
Q Consensus 2 ~g~~l~s~s-~DgtIrlWd~--~g~--~i~~l~g---------H~~~V~~v~~~p~g-~l~s~s~D~tvriWd-~--~~~ 63 (563)
+|+++++++ .+++|++|++ +|. .+..+.. +...+.+++|+|+| .++++..++.|++|+ . ++.
T Consensus 96 dg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~ 175 (347)
T 3hfq_A 96 ARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQL 175 (347)
T ss_dssp TTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCE
T ss_pred CCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcE
Confidence 578888888 7899999998 343 2333322 12358999999999 777777889999999 3 433
Q ss_pred eE--EEe-cCC-cEEEEEEccCCc-EE-EEeCCCcEEEEEcCC
Q 008510 64 VQ--SIE-HPG-CVWDAKFLENGD-IV-TACSDGVTRIWTVHS 100 (563)
Q Consensus 64 ~~--~l~-h~~-~V~~v~~~p~g~-i~-sgs~Dg~Irvwd~~~ 100 (563)
.. .+. +.+ ....++|+|+|+ ++ ++..++.|++|+++.
T Consensus 176 ~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~ 218 (347)
T 3hfq_A 176 SEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDT 218 (347)
T ss_dssp EEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred EEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecC
Confidence 22 223 333 788999999998 54 456789999999874
No 159
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=98.85 E-value=1e-07 Score=94.97 Aligned_cols=201 Identities=13% Similarity=0.093 Sum_probs=126.9
Q ss_pred CCCE-EEEEECCCcEEEEcC-CCceeEEEec-C----CCcEEEEEEcCCC-eEEEEe------------CCCcEEEEc--
Q 008510 2 PGVG-IISASHDCTIRLWAL-TGQVLMEMVG-H----TAIVYSIDSHASG-LIVSGS------------EDRFAKIWK-- 59 (563)
Q Consensus 2 ~g~~-l~s~s~DgtIrlWd~-~g~~i~~l~g-H----~~~V~~v~~~p~g-~l~s~s------------~D~tvriWd-- 59 (563)
+|+. +++++.++.|++||+ +++.+..+.. + ...+.+++|+|+| .+++++ .|+.|++||
T Consensus 44 dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~ 123 (337)
T 1pby_B 44 GGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAE 123 (337)
T ss_dssp TSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETT
T ss_pred CCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECC
Confidence 4555 466667899999999 7888877763 2 2256789999999 777765 679999999
Q ss_pred CCceeEEEecCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeeccccccc----c-e-eEEeeccCC-----
Q 008510 60 DGVCVQSIEHPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASEL----S-Q-YKLCRKKVG----- 127 (563)
Q Consensus 60 ~~~~~~~l~h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v----~-~-~~~~~~~~~----- 127 (563)
+++.++.+.....+.+++|+|+|+ ++++ ++.|++||+.+++.............. . . ..+.....+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~ 201 (337)
T 1pby_B 124 TLSRRKAFEAPRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATP 201 (337)
T ss_dssp TTEEEEEEECCSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEE
T ss_pred CCcEEEEEeCCCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeee
Confidence 667777777666788999999998 7666 789999999988754332222111110 0 0 111111111
Q ss_pred ------------------ceEEEeCCCCceee------------ecccCCCeEEEEecCCCeEEEEEecccceEEEeCcE
Q 008510 128 ------------------GLKLEDLPGLEALQ------------IPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEV 177 (563)
Q Consensus 128 ------------------~i~~~d~~~~~~l~------------~~g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v 177 (563)
.+.+||..+.+... ...++||...++. ...++.||..++.....
T Consensus 202 ~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~---~~~v~~~d~~~~~~~~~--- 275 (337)
T 1pby_B 202 FYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA---YNVLESFDLEKNASIKR--- 275 (337)
T ss_dssp EEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE---ESEEEEEETTTTEEEEE---
T ss_pred eeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe---CCeEEEEECCCCcCcce---
Confidence 46888887765431 2345566554444 24567777665532211
Q ss_pred eeCCCCCCCceeecCcccCcEEEEEc-CCCCeeeeecCCCCCChhHHH
Q 008510 178 VDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRKLPYNRSDNPYDAA 224 (563)
Q Consensus 178 ~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~~~~~w~~a 224 (563)
+... ..+..+.+ +||+.++....+..+.+|++.
T Consensus 276 ------------~~~~--~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~ 309 (337)
T 1pby_B 276 ------------VPLP--HSYYSVNVSTDGSTVWLGGALGDLAAYDAE 309 (337)
T ss_dssp ------------EECS--SCCCEEEECTTSCEEEEESBSSEEEEEETT
T ss_pred ------------ecCC--CceeeEEECCCCCEEEEEcCCCcEEEEECc
Confidence 1111 22456666 677767666667777777764
No 160
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=98.83 E-value=2.4e-08 Score=108.57 Aligned_cols=205 Identities=9% Similarity=0.041 Sum_probs=121.8
Q ss_pred CCCEEEEEEC-CCcEEEEcCCCceeEEEecCC-CcEEEEEEcCCCeEEEEeC---CCcEEEEc--C--CceeEEEecCCc
Q 008510 2 PGVGIISASH-DCTIRLWALTGQVLMEMVGHT-AIVYSIDSHASGLIVSGSE---DRFAKIWK--D--GVCVQSIEHPGC 72 (563)
Q Consensus 2 ~g~~l~s~s~-DgtIrlWd~~g~~i~~l~gH~-~~V~~v~~~p~g~l~s~s~---D~tvriWd--~--~~~~~~l~h~~~ 72 (563)
||+.|++++. ||+++||++++.....+..|. ..+.+++|+|+..+++++. +...++|. . ......+.....
T Consensus 32 DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd~~l~~~~~~~g~~~~~l~~~~~~~~g~~~~l~~~~~ 111 (582)
T 3o4h_A 32 DGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQRLEAVKP 111 (582)
T ss_dssp TTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCSEEEEEEECSTTSCCEEEEEEETTSTTCCEECTTSCS
T ss_pred CCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCCeEEEEeccCCCCcceEEEEEeccCCCccccccCCCC
Confidence 7899999988 999999999444445566665 6899999999954555554 56677776 2 222334443334
Q ss_pred EEEEEEccCCc--EEEEeCCCcEEEEEcCCCceeceeeecccc--cccc-eeEEeeccC----CceEEEeCCCCceeeec
Q 008510 73 VWDAKFLENGD--IVTACSDGVTRIWTVHSDKVADSLELEAYA--SELS-QYKLCRKKV----GGLKLEDLPGLEALQIP 143 (563)
Q Consensus 73 V~~v~~~p~g~--i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~--~~v~-~~~~~~~~~----~~i~~~d~~~~~~l~~~ 143 (563)
+...+|+|+|+ +++.+.++.+.+||+.+++........... -+.+ ...+....+ ..|.+||+.+.+.....
T Consensus 112 ~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~ 191 (582)
T 3o4h_A 112 MRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFD 191 (582)
T ss_dssp BEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEEC
T ss_pred ceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCCceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEee
Confidence 55678888886 344445555569999988743322211110 0111 222222222 56899998766543322
Q ss_pred ----------ccCCCeEEEEecCCC-eEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEE--------c-
Q 008510 144 ----------GTNAGQTKVVREGDN-GVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVD--------I- 203 (563)
Q Consensus 144 ----------g~~dg~~~l~~~~~~-~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd--------~- 203 (563)
.++||...+....++ ..++.||..++... + ..++. ..+..+. +
T Consensus 192 ~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~---------------~~~~~-~~~~~~~~~~~~~~~~s 254 (582)
T 3o4h_A 192 SGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-D---------------LELPS-KDFSSYRPTAITWLGYL 254 (582)
T ss_dssp CSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-E---------------CCCSC-SHHHHHCCSEEEEEEEC
T ss_pred cCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-E---------------ccCCC-cChhhhhhccccceeEc
Confidence 567777666444443 25778887665443 1 11111 1122222 5
Q ss_pred CCCCeeeeecCCCCCChhHH
Q 008510 204 GDGEPTRKLPYNRSDNPYDA 223 (563)
Q Consensus 204 ~dg~~~~~~~~n~~~~~w~~ 223 (563)
+||..++....++..++|.+
T Consensus 255 pdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 255 PDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp TTSCEEEEEEETTEEEEEET
T ss_pred CCCcEEEEEEcCCcEEEEEE
Confidence 77776777777777888877
No 161
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=98.83 E-value=1.1e-07 Score=95.29 Aligned_cols=209 Identities=13% Similarity=0.066 Sum_probs=124.8
Q ss_pred CCCE-EEEEECCCcEEEEcC-CCceeEEEecCC------CcEEEEEEcCCC-eEEEEeCC------------CcEEEEc-
Q 008510 2 PGVG-IISASHDCTIRLWAL-TGQVLMEMVGHT------AIVYSIDSHASG-LIVSGSED------------RFAKIWK- 59 (563)
Q Consensus 2 ~g~~-l~s~s~DgtIrlWd~-~g~~i~~l~gH~------~~V~~v~~~p~g-~l~s~s~D------------~tvriWd- 59 (563)
+|+. +++++.+++|.+||+ +++.+..+..+. ..+.+++|+|+| .+++++.+ +.|.+||
T Consensus 53 dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~ 132 (349)
T 1jmx_B 53 DNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFST 132 (349)
T ss_dssp TSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEG
T ss_pred CCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEEC
Confidence 4664 456667899999999 788887776432 237889999999 77777765 8999999
Q ss_pred -C---CceeEEEecCCcEEEEEEccCCcEEEEeCCCcEEEEEcCCCceeceeeeccccc---------------------
Q 008510 60 -D---GVCVQSIEHPGCVWDAKFLENGDIVTACSDGVTRIWTVHSDKVADSLELEAYAS--------------------- 114 (563)
Q Consensus 60 -~---~~~~~~l~h~~~V~~v~~~p~g~i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~--------------------- 114 (563)
+ .+.+..+.++..+.+++|+|+|++++++ +.|++||..+++............
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (349)
T 1jmx_B 133 ADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEF 210 (349)
T ss_dssp GGGGGBCCSEEEECCSSCCCEEECTTSCEEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEE
T ss_pred CCccccceeeeccCCCcccceeECCCCcEEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeE
Confidence 4 3445566677789999999999955543 449999999887543322221000
Q ss_pred -ccceeEE-------------------eeccCCceEEEeCCCC--ceeeecccC-CCeEEEEecCCCeEEEEEecccceE
Q 008510 115 -ELSQYKL-------------------CRKKVGGLKLEDLPGL--EALQIPGTN-AGQTKVVREGDNGVAYSWDMKEQKW 171 (563)
Q Consensus 115 -~v~~~~~-------------------~~~~~~~i~~~d~~~~--~~l~~~g~~-dg~~~l~~~~~~~~~~~wd~~~~~w 171 (563)
......+ .....+.++.+++... .......++ ||...++. ...++.||..++..
T Consensus 211 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~---~~~v~~~d~~~~~~ 287 (349)
T 1jmx_B 211 SMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV---LNRLAKYDLKQRKL 287 (349)
T ss_dssp EEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE---ESEEEEEETTTTEE
T ss_pred EeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE---cCeEEEEECccCeE
Confidence 0000000 1112234444444211 122223456 77766555 35678898877654
Q ss_pred EEe---C-cEeeCCCCCCCceeecCcccCcEEEEEcCCCCeeeeecCC
Q 008510 172 DKL---G-EVVDGPDDGMNRPILDGIQYDYVFDVDIGDGEPTRKLPYN 215 (563)
Q Consensus 172 ~~~---g-~v~~~~~~~~~~~~~~g~~~d~v~~vd~~dg~~~~~~~~n 215 (563)
... + ...+..-...++.++.+...+.|.-++...++.+..++.-
T Consensus 288 ~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 288 IKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp EEEEECSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred EEEEcCCCCccceEECCCCCEEEEecCCCeEEEEeccccceeeeeecC
Confidence 322 1 1111111122445555555577888888777776665543
No 162
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=98.82 E-value=1.6e-07 Score=95.31 Aligned_cols=186 Identities=10% Similarity=0.089 Sum_probs=106.7
Q ss_pred CCCEEEEEE-CCCcEEEEcC-C-Cce--eEEE---ec--------CCCcEEEEEEcCCC-eE-EEEeCCCcEEEEc-C--
Q 008510 2 PGVGIISAS-HDCTIRLWAL-T-GQV--LMEM---VG--------HTAIVYSIDSHASG-LI-VSGSEDRFAKIWK-D-- 60 (563)
Q Consensus 2 ~g~~l~s~s-~DgtIrlWd~-~-g~~--i~~l---~g--------H~~~V~~v~~~p~g-~l-~s~s~D~tvriWd-~-- 60 (563)
+|+++++++ .+++|.+|++ . +.. +... .+ +...+++++|+|+| .+ +++..++.|++|+ +
T Consensus 108 dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~ 187 (361)
T 3scy_A 108 NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPN 187 (361)
T ss_dssp CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCC
Confidence 567677666 5889999998 3 321 1111 11 23346899999999 45 4455588999998 2
Q ss_pred C-----c-ee-----EEEe--cCCcEEEEEEccCCc-EEEEe-CCCcEEEEEcCCCceeceeeecccccccceeEEeecc
Q 008510 61 G-----V-CV-----QSIE--HPGCVWDAKFLENGD-IVTAC-SDGVTRIWTVHSDKVADSLELEAYASELSQYKLCRKK 125 (563)
Q Consensus 61 ~-----~-~~-----~~l~--h~~~V~~v~~~p~g~-i~sgs-~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 125 (563)
. + .. ..+. +.....+++|+|+|+ +++++ .++.|++||+++++......+.....
T Consensus 188 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~----------- 256 (361)
T 3scy_A 188 ANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTV----------- 256 (361)
T ss_dssp CCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSS-----------
T ss_pred CCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCC-----------
Confidence 2 2 21 1222 445789999999998 66666 68999999998765321111111000
Q ss_pred CCceEEEeCCCCceeeecccCCCeEEEEecCC-CeEEEEEecc--cceEEEeCcEeeCCCCCCCceeecCcccCcEEEEE
Q 008510 126 VGGLKLEDLPGLEALQIPGTNAGQTKVVREGD-NGVAYSWDMK--EQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVD 202 (563)
Q Consensus 126 ~~~i~~~d~~~~~~l~~~g~~dg~~~l~~~~~-~~~~~~wd~~--~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd 202 (563)
..........++||.+.++...+ ...+.+|+.. .+.+..+..+.. | ..+..+.
T Consensus 257 ---------~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~------------g---~~~~~~~ 312 (361)
T 3scy_A 257 ---------NAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT------------G---IHPRNFI 312 (361)
T ss_dssp ---------CCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC------------S---SCCCEEE
T ss_pred ---------CCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC------------C---CCCceEE
Confidence 00111233467788876665554 4566677753 444443322211 1 2244566
Q ss_pred c-CCCCeeeeec-CCCCCChhH
Q 008510 203 I-GDGEPTRKLP-YNRSDNPYD 222 (563)
Q Consensus 203 ~-~dg~~~~~~~-~n~~~~~w~ 222 (563)
+ +||+.++... .+..+.+|.
T Consensus 313 ~spdg~~l~~~~~~~~~v~v~~ 334 (361)
T 3scy_A 313 ITPNGKYLLVACRDTNVIQIFE 334 (361)
T ss_dssp ECTTSCEEEEEETTTTEEEEEE
T ss_pred ECCCCCEEEEEECCCCCEEEEE
Confidence 6 6776555554 344455543
No 163
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=98.79 E-value=7.5e-07 Score=87.07 Aligned_cols=204 Identities=14% Similarity=0.173 Sum_probs=123.8
Q ss_pred CCCEEEEEECCCcEEEEcCCCceeEEEe------cCCCcEEEEEE-cCCC-eEEEEeC-CCcEEEEc-CCceeEEEe--c
Q 008510 2 PGVGIISASHDCTIRLWALTGQVLMEMV------GHTAIVYSIDS-HASG-LIVSGSE-DRFAKIWK-DGVCVQSIE--H 69 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~~g~~i~~l~------gH~~~V~~v~~-~p~g-~l~s~s~-D~tvriWd-~~~~~~~l~--h 69 (563)
+|+.+++.+.++.|++||.+++.+..+. +|...+.++++ .+++ .+++... ++.|++|+ +++.+..+. +
T Consensus 40 ~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~~g~~~~~~~~~~ 119 (286)
T 1q7f_A 40 QNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYGQFVRKFGATI 119 (286)
T ss_dssp TCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTTSCEEEEECTTT
T ss_pred CCCEEEEECCCCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEECCCCcEEEEecCcc
Confidence 4677888888999999999888777764 34567899999 4677 4555433 88999999 888888776 3
Q ss_pred CCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeeccccc--------ccceeEEeeccCCceEEEeCCCCcee
Q 008510 70 PGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYAS--------ELSQYKLCRKKVGGLKLEDLPGLEAL 140 (563)
Q Consensus 70 ~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~--------~v~~~~~~~~~~~~i~~~d~~~~~~l 140 (563)
...++++++.|+|+ +++...++.|++||..... ........... .-....++...++.|.+||..+....
T Consensus 120 ~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~-~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~ 198 (286)
T 1q7f_A 120 LQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNV-LHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLR 198 (286)
T ss_dssp CSCEEEEEECTTSCEEEEETTTTEEEEECTTSCE-EEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCEEE
T ss_pred CCCceEEEEeCCCCEEEEECCCCEEEEEcCCCCE-EEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCCCEEE
Confidence 34799999999999 5565678899999975432 22111101000 11234444555778999997553221
Q ss_pred eec------------ccCCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecC-cccCcEEEEEc-CCC
Q 008510 141 QIP------------GTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDG-IQYDYVFDVDI-GDG 206 (563)
Q Consensus 141 ~~~------------g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g-~~~d~v~~vd~-~dg 206 (563)
... ..++|.+.+....++..+..|+.... .+. .+.. ........+.+ ++|
T Consensus 199 ~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~-------~~~---------~~~~~~~~~~~~~i~~~~~g 262 (286)
T 1q7f_A 199 QIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQ-------LIS---------ALESKVKHAQCFDVALMDDG 262 (286)
T ss_dssp EESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSC-------EEE---------EEEESSCCSCEEEEEEETTT
T ss_pred EEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCC-------EEE---------EEcccCCCCcceeEEECCCC
Confidence 111 22344433333333224445553221 111 1111 11134667777 788
Q ss_pred CeeeeecCCCCCChhHH
Q 008510 207 EPTRKLPYNRSDNPYDA 223 (563)
Q Consensus 207 ~~~~~~~~n~~~~~w~~ 223 (563)
..+.. ..|..+.+|+.
T Consensus 263 ~l~vs-~~~~~v~v~~~ 278 (286)
T 1q7f_A 263 SVVLA-SKDYRLYIYRY 278 (286)
T ss_dssp EEEEE-ETTTEEEEEEC
T ss_pred cEEEE-CCCCeEEEEEc
Confidence 75555 56777888864
No 164
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=98.76 E-value=5.5e-07 Score=90.44 Aligned_cols=209 Identities=10% Similarity=-0.002 Sum_probs=128.5
Q ss_pred CCCEEEEEECC------------------------CcEEEEcC-CCceeEEEe-cCCCcEEEEEEcCCC-eEEEEeCCCc
Q 008510 2 PGVGIISASHD------------------------CTIRLWAL-TGQVLMEMV-GHTAIVYSIDSHASG-LIVSGSEDRF 54 (563)
Q Consensus 2 ~g~~l~s~s~D------------------------gtIrlWd~-~g~~i~~l~-gH~~~V~~v~~~p~g-~l~s~s~D~t 54 (563)
+|+.+++.+.+ ++|.+||. +|+.+..+. ++-.....++++|+| .+++...++.
T Consensus 34 ~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~l~v~d~~~~~ 113 (329)
T 3fvz_A 34 KNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNYWVTDVALHQ 113 (329)
T ss_dssp TCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSCEEEEETTTTE
T ss_pred CCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCCCEEEEECCCCE
Confidence 47788888777 47999999 688877665 455688999999999 7888888999
Q ss_pred EEEEc-CCc--eeEEEe----------cCCcEEEEEEcc-CCc-EEEEe-CCCcEEEEEcCCCceeceeeec--------
Q 008510 55 AKIWK-DGV--CVQSIE----------HPGCVWDAKFLE-NGD-IVTAC-SDGVTRIWTVHSDKVADSLELE-------- 110 (563)
Q Consensus 55 vriWd-~~~--~~~~l~----------h~~~V~~v~~~p-~g~-i~sgs-~Dg~Irvwd~~~~~~~~~~~~~-------- 110 (563)
|++|+ +++ .+.++. +-...+.++++| +|+ +++.+ .++.|++||.. ++........
T Consensus 114 v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~-g~~~~~~~~~g~~~~~~~ 192 (329)
T 3fvz_A 114 VFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPS-GKFVTQWGEESSGSSPRP 192 (329)
T ss_dssp EEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTT-SCEEEEECEECCSSSCCT
T ss_pred EEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCC-CCEEEEeccCCCCCCCCC
Confidence 99999 666 666663 223689999999 788 45555 58999999944 4433221110
Q ss_pred -------ccc-ccc-ceeEEeeccCCceEEEeCCCCceeeec---ccCCCeEEEEecC---------------CCeEEEE
Q 008510 111 -------AYA-SEL-SQYKLCRKKVGGLKLEDLPGLEALQIP---GTNAGQTKVVREG---------------DNGVAYS 163 (563)
Q Consensus 111 -------~~~-~~v-~~~~~~~~~~~~i~~~d~~~~~~l~~~---g~~dg~~~l~~~~---------------~~~~~~~ 163 (563)
... ..- ..+.++...++.|.+|+..+++.+... +...+...+...+ ....++.
T Consensus 193 ~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~ 272 (329)
T 3fvz_A 193 GQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFV 272 (329)
T ss_dssp TEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEE
T ss_pred cccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEE
Confidence 000 011 244445556678999998755444332 1222222222222 1112444
Q ss_pred EecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeeeecCCCCCChhHHH
Q 008510 164 WDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRKLPYNRSDNPYDAA 224 (563)
Q Consensus 164 wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~~~~~w~~a 224 (563)
|+..++..... .+. ......+...+.+ ++|.....-..|..+..|+..
T Consensus 273 ~~~~~g~~~~~---~~~----------~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~ 321 (329)
T 3fvz_A 273 MNFSSGEIIDV---FKP----------VRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLT 321 (329)
T ss_dssp EETTTCCEEEE---ECC----------SSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEE
T ss_pred EEcCCCeEEEE---EcC----------CCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCC
Confidence 55433322211 000 0122356788888 888766777777777777653
No 165
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=98.76 E-value=4e-08 Score=110.32 Aligned_cols=97 Identities=9% Similarity=-0.007 Sum_probs=76.8
Q ss_pred CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcE-----EEEEEcCCC-eEEEEeCC---------CcEEEEc--CCce
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIV-----YSIDSHASG-LIVSGSED---------RFAKIWK--DGVC 63 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V-----~~v~~~p~g-~l~s~s~D---------~tvriWd--~~~~ 63 (563)
||++++++ |++|++||+ +|++...+.+|.... .+++|+||| .++.++.| +.+.+|| ++++
T Consensus 27 dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~ 104 (740)
T 4a5s_A 27 DHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQL 104 (740)
T ss_dssp SSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE
T ss_pred CCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcE
Confidence 46677775 999999999 888888888887532 347889999 78888876 4556999 4554
Q ss_pred eEEEe-cCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCc
Q 008510 64 VQSIE-HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDK 102 (563)
Q Consensus 64 ~~~l~-h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~ 102 (563)
. .+. |+..+..++|+|||+ ||.+ .|+.|++|+..++.
T Consensus 105 ~-~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~ 143 (740)
T 4a5s_A 105 I-TEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLP 143 (740)
T ss_dssp C-CSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSC
T ss_pred E-EcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCc
Confidence 3 444 778999999999999 7666 68999999998876
No 166
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=98.75 E-value=8.5e-07 Score=86.92 Aligned_cols=98 Identities=18% Similarity=0.190 Sum_probs=82.7
Q ss_pred CCCEEEEEECCCcEEEEcC-CCceeEEEecCC-CcEEEEEEcCCC-eEEEEeCCCcEEEEc-CCceeEEEec--CCcEEE
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHT-AIVYSIDSHASG-LIVSGSEDRFAKIWK-DGVCVQSIEH--PGCVWD 75 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~-~~V~~v~~~p~g-~l~s~s~D~tvriWd-~~~~~~~l~h--~~~V~~ 75 (563)
||+.|++++.|+.|.+||. +|+.+.++..|. ..+.++.++|+| .++ +.++.|..|| +++.+..+.. ...+.+
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~~G~~~W~~~~~~~~~~~~ 81 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITRDGRELWNIAAPAGCEMQT 81 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECTTSCEEEEEECCTTCEEEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECCCCCEEEEEcCCCCccccc
Confidence 6899999999999999999 999999999876 578999999999 666 4578899999 9999999883 348999
Q ss_pred EEEccCCc-EEEEeC-CCcEEEEEcCCCc
Q 008510 76 AKFLENGD-IVTACS-DGVTRIWTVHSDK 102 (563)
Q Consensus 76 v~~~p~g~-i~sgs~-Dg~Irvwd~~~~~ 102 (563)
+.+.|+|+ +++.+. ++.|..+|. +++
T Consensus 82 ~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk 109 (276)
T 3no2_A 82 ARILPDGNALVAWCGHPSTILEVNM-KGE 109 (276)
T ss_dssp EEECTTSCEEEEEESTTEEEEEECT-TSC
T ss_pred cEECCCCCEEEEecCCCCEEEEEeC-CCC
Confidence 99999999 666666 677777776 455
No 167
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=98.75 E-value=1.2e-07 Score=103.10 Aligned_cols=123 Identities=13% Similarity=0.015 Sum_probs=87.8
Q ss_pred EEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCC----CcEEEEc-CCceeEEEe-cCCcEEEE
Q 008510 5 GIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSED----RFAKIWK-DGVCVQSIE-HPGCVWDA 76 (563)
Q Consensus 5 ~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D----~tvriWd-~~~~~~~l~-h~~~V~~v 76 (563)
.+++++.|+ +.+||+ +|++..... |.. .+++|+||| .+++++.| ++|++|| .+...+.+. |.+.+.++
T Consensus 125 ~~~s~~~~~-~~l~d~~~g~~~~l~~-~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~ 200 (582)
T 3o4h_A 125 VFTGATEDR-VALYALDGGGLRELAR-LPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSA 200 (582)
T ss_dssp EEEEECSSC-EEEEEEETTEEEEEEE-ESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEECCSSCEEEEE
T ss_pred EEEecCCCC-ceEEEccCCcEEEeec-CCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEeecCCCccccc
Confidence 455555555 559999 666554444 333 789999999 88878777 7899999 433344555 88899999
Q ss_pred EEccCCc-EEEEeCCC--cEEEEEcCCCceeceeeeccccc---------------ccc-eeEEeeccCCceEEEeC
Q 008510 77 KFLENGD-IVTACSDG--VTRIWTVHSDKVADSLELEAYAS---------------ELS-QYKLCRKKVGGLKLEDL 134 (563)
Q Consensus 77 ~~~p~g~-i~sgs~Dg--~Irvwd~~~~~~~~~~~~~~~~~---------------~v~-~~~~~~~~~~~i~~~d~ 134 (563)
+|+|||+ |+++..|+ .|++||+.+++.. .+..+.. ..+ ...++...++.+++|++
T Consensus 201 ~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 201 SISPGMKVTAGLETAREARLVTVDPRDGSVE---DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp EECTTSCEEEEEECSSCEEEEEECTTTCCEE---ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred eECCCCCEEEEccCCCeeEEEEEcCCCCcEE---EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 9999999 88888888 8999999988744 2222111 111 45566777889999998
No 168
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=98.69 E-value=2.3e-06 Score=85.78 Aligned_cols=105 Identities=10% Similarity=0.102 Sum_probs=83.8
Q ss_pred CCCEEEEEECCCcEEEEcCCCc--eeEEE---------ecCCCcEEEEEEcC-CC-eEEEEe-CCCcEEEEc-CCceeEE
Q 008510 2 PGVGIISASHDCTIRLWALTGQ--VLMEM---------VGHTAIVYSIDSHA-SG-LIVSGS-EDRFAKIWK-DGVCVQS 66 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~~g~--~i~~l---------~gH~~~V~~v~~~p-~g-~l~s~s-~D~tvriWd-~~~~~~~ 66 (563)
+|+.+++.+.++.|++|+.+|+ .+.++ .++.....+++++| +| .+++.+ .++.|++|+ +++.+..
T Consensus 101 ~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g~~~~~ 180 (329)
T 3fvz_A 101 DGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSGKFVTQ 180 (329)
T ss_dssp TSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTSCEEEE
T ss_pred CCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCEEEE
Confidence 4778888888999999999766 66666 35566789999999 67 677776 689999999 8888888
Q ss_pred EecC-----------CcEEEEEEccC-Cc-EEEEeCCCcEEEEEcCCCceece
Q 008510 67 IEHP-----------GCVWDAKFLEN-GD-IVTACSDGVTRIWTVHSDKVADS 106 (563)
Q Consensus 67 l~h~-----------~~V~~v~~~p~-g~-i~sgs~Dg~Irvwd~~~~~~~~~ 106 (563)
+... ...+.+++.|+ |. +++...++.|++||..+++....
T Consensus 181 ~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~ 233 (329)
T 3fvz_A 181 WGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVRE 233 (329)
T ss_dssp ECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred eccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEE
Confidence 7521 13899999998 77 57777889999999997775443
No 169
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=98.69 E-value=1e-07 Score=106.26 Aligned_cols=85 Identities=12% Similarity=0.049 Sum_probs=63.2
Q ss_pred CCCEEEEEEC---------CCcEEEEcC-CCcee--EEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEE
Q 008510 2 PGVGIISASH---------DCTIRLWAL-TGQVL--MEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQS 66 (563)
Q Consensus 2 ~g~~l~s~s~---------DgtIrlWd~-~g~~i--~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~ 66 (563)
||++|++++. |++|++||+ +|+++ ..+ ...+.+++|+||| .++.++ |++|++|+ ++++.+.
T Consensus 70 Dg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l 145 (719)
T 1z68_A 70 DRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQI 145 (719)
T ss_dssp TSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEEC
T ss_pred CCCeEEEEecCceeEEeecceEEEEEECCCCccccceec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEE
Confidence 6889999887 799999999 56552 223 3568899999999 777775 78999999 5555432
Q ss_pred Ee--cCCcE-----------------EEEEEccCCc-EEEEeCC
Q 008510 67 IE--HPGCV-----------------WDAKFLENGD-IVTACSD 90 (563)
Q Consensus 67 l~--h~~~V-----------------~~v~~~p~g~-i~sgs~D 90 (563)
.. +...| .+++|+|||+ |++++.|
T Consensus 146 ~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d 189 (719)
T 1z68_A 146 TFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFN 189 (719)
T ss_dssp CCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEE
T ss_pred ecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEEC
Confidence 22 22223 4899999999 8888765
No 170
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=98.67 E-value=4.4e-07 Score=92.50 Aligned_cols=99 Identities=9% Similarity=0.082 Sum_probs=71.6
Q ss_pred CCCEEEEEECCCcEEEEcC--CCceeEEEe--cCCCcEEEEEEcCCC-e-E-EEEe-------------CCCcEEEEc--
Q 008510 2 PGVGIISASHDCTIRLWAL--TGQVLMEMV--GHTAIVYSIDSHASG-L-I-VSGS-------------EDRFAKIWK-- 59 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~--~g~~i~~l~--gH~~~V~~v~~~p~g-~-l-~s~s-------------~D~tvriWd-- 59 (563)
+|+++++++.+ +|++|++ +|++..... .+ +...+++|+|+| . + ++++ .++++++|+
T Consensus 50 dg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~ 127 (365)
T 1jof_A 50 ERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVS 127 (365)
T ss_dssp TSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEEC
T ss_pred CCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC-CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccC
Confidence 57888999888 9999998 576654332 11 235568999999 4 3 3442 689999999
Q ss_pred -CCceeEEEe-----cCCcEEEEEEccCCc-EEEEe-CCCcEEEEEcC-CCc
Q 008510 60 -DGVCVQSIE-----HPGCVWDAKFLENGD-IVTAC-SDGVTRIWTVH-SDK 102 (563)
Q Consensus 60 -~~~~~~~l~-----h~~~V~~v~~~p~g~-i~sgs-~Dg~Irvwd~~-~~~ 102 (563)
+++....+. +...+.+++|+|+|+ ++++. .++.|++||+. +++
T Consensus 128 ~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~ 179 (365)
T 1jof_A 128 ETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGE 179 (365)
T ss_dssp TTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSC
T ss_pred CCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCC
Confidence 355544443 345899999999998 66655 46899999998 665
No 171
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=98.65 E-value=2.8e-06 Score=86.00 Aligned_cols=195 Identities=12% Similarity=0.112 Sum_probs=113.4
Q ss_pred CCCEEEEEECC----CcEEEEcC-C--Cc--eeEEEecCCCcEEEEEEcCCC-eEEEE-eCCCcEEEEc--CCce----e
Q 008510 2 PGVGIISASHD----CTIRLWAL-T--GQ--VLMEMVGHTAIVYSIDSHASG-LIVSG-SEDRFAKIWK--DGVC----V 64 (563)
Q Consensus 2 ~g~~l~s~s~D----gtIrlWd~-~--g~--~i~~l~gH~~~V~~v~~~p~g-~l~s~-s~D~tvriWd--~~~~----~ 64 (563)
+|+++++++.+ +.|++|++ . |+ .+.....+......+++ ++ .++++ ..+++|.+|+ .... .
T Consensus 60 dg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~ 137 (361)
T 3scy_A 60 DGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPAS 137 (361)
T ss_dssp TSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCS
T ss_pred CCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccc
Confidence 57889999886 89999998 2 44 34445556667788888 65 55544 4688999999 2222 2
Q ss_pred EEEecC-----------CcEEEEEEccCCc-EEEEe-CCCcEEEEEcCCCceeceee-ecccccccceeEEeeccCCceE
Q 008510 65 QSIEHP-----------GCVWDAKFLENGD-IVTAC-SDGVTRIWTVHSDKVADSLE-LEAYASELSQYKLCRKKVGGLK 130 (563)
Q Consensus 65 ~~l~h~-----------~~V~~v~~~p~g~-i~sgs-~Dg~Irvwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~i~ 130 (563)
..+.+. ..+++++|+|+|+ +++++ .++.|++|+++......... +... +...
T Consensus 138 ~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~--------------~~~~ 203 (361)
T 3scy_A 138 DVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTK--------------GTPE 203 (361)
T ss_dssp EEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEE--------------EEEE
T ss_pred eeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeec--------------cccc
Confidence 222221 2468899999998 65444 58999999987654100000 0000 0000
Q ss_pred EEeCC-CCceeeecccCCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCe
Q 008510 131 LEDLP-GLEALQIPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEP 208 (563)
Q Consensus 131 ~~d~~-~~~~l~~~g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~ 208 (563)
....+ +........++||...++.......+.+|+...+.+..+..+..... + ......+.+ +||+.
T Consensus 204 ~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~----------~-~~~~~~i~~spdg~~ 272 (361)
T 3scy_A 204 AFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTV----------N-AQGSGDIHLSPDGKY 272 (361)
T ss_dssp EEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSS----------C-CCCEEEEEECTTSSE
T ss_pred ceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCC----------C-CCCcccEEECCCCCE
Confidence 01111 11122344678888776666555677888877776654433322111 1 123467777 78887
Q ss_pred eeeecCC--CCCChhHH
Q 008510 209 TRKLPYN--RSDNPYDA 223 (563)
Q Consensus 209 ~~~~~~n--~~~~~w~~ 223 (563)
++....+ ..+.+|++
T Consensus 273 l~v~~~~~~~~i~v~~~ 289 (361)
T 3scy_A 273 LYASNRLKADGVAIFKV 289 (361)
T ss_dssp EEEEECSSSCEEEEEEE
T ss_pred EEEECCCCCCEEEEEEE
Confidence 6554443 55677776
No 172
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=98.65 E-value=4.8e-07 Score=92.37 Aligned_cols=101 Identities=12% Similarity=0.119 Sum_probs=78.1
Q ss_pred CCEEEEEE------CCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEe----------CCCcEEEEc--CCc
Q 008510 3 GVGIISAS------HDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGS----------EDRFAKIWK--DGV 62 (563)
Q Consensus 3 g~~l~s~s------~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s----------~D~tvriWd--~~~ 62 (563)
+++++.+. .|++|.+||. +++.+.++..+..+ .++|+|+| .+..++ .|++|.+|| +.+
T Consensus 15 ~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~ 92 (361)
T 2oiz_A 15 ENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLT 92 (361)
T ss_dssp GGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCC
T ss_pred CCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCc
Confidence 45555543 4789999998 89998888877655 89999999 666665 367899999 778
Q ss_pred eeEEEe-c------CCcEEEEEEccCCc-EEEEeC--CCcEEEEEcCCCceec
Q 008510 63 CVQSIE-H------PGCVWDAKFLENGD-IVTACS--DGVTRIWTVHSDKVAD 105 (563)
Q Consensus 63 ~~~~l~-h------~~~V~~v~~~p~g~-i~sgs~--Dg~Irvwd~~~~~~~~ 105 (563)
.++++. . ......++++|+|+ ++++.. ++.|.+||+.+++...
T Consensus 93 ~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~ 145 (361)
T 2oiz_A 93 FEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVE 145 (361)
T ss_dssp EEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEE
T ss_pred EEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEE
Confidence 888876 2 23577899999999 665543 6899999999987544
No 173
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=98.64 E-value=8.9e-07 Score=90.22 Aligned_cols=90 Identities=7% Similarity=0.023 Sum_probs=67.2
Q ss_pred CCCcEEEEcC--CCceeEEEe----cCCCcEEEEEEcCCC-eEEEEe-CCCcEEEEc-C--Ccee--EEEe---cCCcEE
Q 008510 11 HDCTIRLWAL--TGQVLMEMV----GHTAIVYSIDSHASG-LIVSGS-EDRFAKIWK-D--GVCV--QSIE---HPGCVW 74 (563)
Q Consensus 11 ~DgtIrlWd~--~g~~i~~l~----gH~~~V~~v~~~p~g-~l~s~s-~D~tvriWd-~--~~~~--~~l~---h~~~V~ 74 (563)
.++++++|++ +|+....+. .+...+.+++|+|+| .++++. .+++|++|+ . ++.. ..+. |...++
T Consensus 117 ~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~ 196 (365)
T 1jof_A 117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPR 196 (365)
T ss_dssp SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEE
T ss_pred CCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCC
Confidence 6999999998 476655544 356789999999999 666655 467999999 5 4432 3343 245799
Q ss_pred EEEEccCCc-EEEEeC-CCcEEEEEcCC
Q 008510 75 DAKFLENGD-IVTACS-DGVTRIWTVHS 100 (563)
Q Consensus 75 ~v~~~p~g~-i~sgs~-Dg~Irvwd~~~ 100 (563)
.++|+|+|+ +++++. ++.|.+|+++.
T Consensus 197 ~~~~spdg~~l~v~~~~~~~v~v~~~~~ 224 (365)
T 1jof_A 197 WVAMHPTGNYLYALMEAGNRICEYVIDP 224 (365)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred EeEECCCCCEEEEEECCCCeEEEEEEeC
Confidence 999999998 666664 78999998763
No 174
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=98.57 E-value=3.6e-06 Score=85.81 Aligned_cols=101 Identities=5% Similarity=-0.106 Sum_probs=74.4
Q ss_pred CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEE--EcCCC-eEEEE----------------------eCCCcE
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSID--SHASG-LIVSG----------------------SEDRFA 55 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~--~~p~g-~l~s~----------------------s~D~tv 55 (563)
||+.|+.++.++.|++||+ +++....+..|...+.... ++|++ .++.. +.+..|
T Consensus 91 dg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 170 (388)
T 3pe7_A 91 DDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRL 170 (388)
T ss_dssp TSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEE
T ss_pred CCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceE
Confidence 6889999999999999999 7777777777777665544 47888 55532 244678
Q ss_pred EEEc--CCceeEEEecCCcEEEEEEcc-CCc-EEEEeCC------CcEEEEEcCCCc
Q 008510 56 KIWK--DGVCVQSIEHPGCVWDAKFLE-NGD-IVTACSD------GVTRIWTVHSDK 102 (563)
Q Consensus 56 riWd--~~~~~~~l~h~~~V~~v~~~p-~g~-i~sgs~D------g~Irvwd~~~~~ 102 (563)
.+|| +++......+...+..++|+| +|+ |+..+.+ ..|.++|...+.
T Consensus 171 ~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~ 227 (388)
T 3pe7_A 171 MRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTN 227 (388)
T ss_dssp EEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCC
T ss_pred EEEECCCCceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCc
Confidence 9999 555444444777899999999 998 7666653 378888876654
No 175
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=98.54 E-value=5.3e-07 Score=99.41 Aligned_cols=100 Identities=15% Similarity=0.088 Sum_probs=73.3
Q ss_pred CCCE-EEEEEC-CCcEEEEcCC--C-ceeEEEec-----CCCcEEEEEEcCCC-eEEEEeCC----------CcEEEEc-
Q 008510 2 PGVG-IISASH-DCTIRLWALT--G-QVLMEMVG-----HTAIVYSIDSHASG-LIVSGSED----------RFAKIWK- 59 (563)
Q Consensus 2 ~g~~-l~s~s~-DgtIrlWd~~--g-~~i~~l~g-----H~~~V~~v~~~p~g-~l~s~s~D----------~tvriWd- 59 (563)
||+. ++.++. +..|.+|+.. | .....+.. |...+.+++|+||| .+++++.| .+|++|+
T Consensus 89 Dg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~ 168 (662)
T 3azo_A 89 AGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPL 168 (662)
T ss_dssp SSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEET
T ss_pred CCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEEC
Confidence 4666 665543 4556666666 4 55667766 77789999999999 88888877 5899999
Q ss_pred CC------ceeEEEe--cCCcEEEEEEccCCc-EEEEeCCC--------cEEEEEcC-CC
Q 008510 60 DG------VCVQSIE--HPGCVWDAKFLENGD-IVTACSDG--------VTRIWTVH-SD 101 (563)
Q Consensus 60 ~~------~~~~~l~--h~~~V~~v~~~p~g~-i~sgs~Dg--------~Irvwd~~-~~ 101 (563)
.+ .....+. +...+.+++|+|||+ |+.++.++ .|++||+. ++
T Consensus 169 ~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g 228 (662)
T 3azo_A 169 DGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDG 228 (662)
T ss_dssp TSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTS
T ss_pred CCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCC
Confidence 44 3444443 456888999999999 87777553 79999998 56
No 176
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=98.53 E-value=3.1e-06 Score=82.61 Aligned_cols=99 Identities=14% Similarity=0.251 Sum_probs=80.3
Q ss_pred CCCEEEEEECCCcEEEEcCCCceeEEEe--cCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc-CCceeEEEecC---CcEE
Q 008510 2 PGVGIISASHDCTIRLWALTGQVLMEMV--GHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-DGVCVQSIEHP---GCVW 74 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~~g~~i~~l~--gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd-~~~~~~~l~h~---~~V~ 74 (563)
+|+.+++.+.++.|++|+.+|+.+..+. ++...+.+++++|+| .+++.+.++.|++|+ +++.+..+... ..+.
T Consensus 131 ~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~g~~~~p~ 210 (286)
T 1q7f_A 131 KGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIGGEGITNYPI 210 (286)
T ss_dssp TSCEEEEETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCEEEEESCTTTSCSEE
T ss_pred CCCEEEEECCCCEEEEEcCCCCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCCCEEEEEccCCccCCCc
Confidence 4677777778899999999888877775 455678999999999 777777899999999 88888877632 5789
Q ss_pred EEEEccCCc-EEEEeCCC-cEEEEEcCC
Q 008510 75 DAKFLENGD-IVTACSDG-VTRIWTVHS 100 (563)
Q Consensus 75 ~v~~~p~g~-i~sgs~Dg-~Irvwd~~~ 100 (563)
.+++.++|+ +++...++ .|++||...
T Consensus 211 ~i~~d~~G~l~v~~~~~~~~i~~~~~~g 238 (286)
T 1q7f_A 211 GVGINSNGEILIADNHNNFNLTIFTQDG 238 (286)
T ss_dssp EEEECTTCCEEEEECSSSCEEEEECTTS
T ss_pred EEEECCCCCEEEEeCCCCEEEEEECCCC
Confidence 999999999 55555665 999999643
No 177
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=98.50 E-value=3.4e-05 Score=83.38 Aligned_cols=168 Identities=13% Similarity=0.009 Sum_probs=118.5
Q ss_pred CEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc----CCceeEEEecCCcEEEEE
Q 008510 4 VGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK----DGVCVQSIEHPGCVWDAK 77 (563)
Q Consensus 4 ~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd----~~~~~~~l~h~~~V~~v~ 77 (563)
..+++...|++|.+||. +++.+.++... ..++.+.++||| +++++++|+.|.+|| +++.+..+........++
T Consensus 168 ~~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~~ia 246 (567)
T 1qks_A 168 LFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIE 246 (567)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEE
T ss_pred eEEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCceeE
Confidence 46778888999999999 88888888643 456799999999 788889999999999 345666666555678999
Q ss_pred Ec----cCCc-EE-EEeCCCcEEEEEcCCCceeceeeecccc--------c-cc---------ceeEEeeccCCceEEEe
Q 008510 78 FL----ENGD-IV-TACSDGVTRIWTVHSDKVADSLELEAYA--------S-EL---------SQYKLCRKKVGGLKLED 133 (563)
Q Consensus 78 ~~----p~g~-i~-sgs~Dg~Irvwd~~~~~~~~~~~~~~~~--------~-~v---------~~~~~~~~~~~~i~~~d 133 (563)
|+ |+|+ ++ +.-.++.|.|||..+.+........... . .+ ..+.+.....|.|.+.|
T Consensus 247 ~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd 326 (567)
T 1qks_A 247 TSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVD 326 (567)
T ss_dssp ECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEE
T ss_pred EccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEe
Confidence 99 6998 54 4455699999999888765443332210 0 11 12333445568888888
Q ss_pred CCCCceee------------ecccCCCeEEEEecCCCeEEEEEecccceEE
Q 008510 134 LPGLEALQ------------IPGTNAGQTKVVREGDNGVAYSWDMKEQKWD 172 (563)
Q Consensus 134 ~~~~~~l~------------~~g~~dg~~~l~~~~~~~~~~~wd~~~~~w~ 172 (563)
......+. ...+++|.+.++.......+..+|..+++-.
T Consensus 327 ~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~ 377 (567)
T 1qks_A 327 YTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLV 377 (567)
T ss_dssp TTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEE
T ss_pred cCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEE
Confidence 76542211 1256788888777765566777998887644
No 178
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=98.49 E-value=3.1e-06 Score=93.20 Aligned_cols=101 Identities=13% Similarity=0.061 Sum_probs=75.9
Q ss_pred CCCEEEEEECC----------CcEEEEcCCC------ceeEEEe-cCCCcEEEEEEcCCC-eEEEEeCCC--------cE
Q 008510 2 PGVGIISASHD----------CTIRLWALTG------QVLMEMV-GHTAIVYSIDSHASG-LIVSGSEDR--------FA 55 (563)
Q Consensus 2 ~g~~l~s~s~D----------gtIrlWd~~g------~~i~~l~-gH~~~V~~v~~~p~g-~l~s~s~D~--------tv 55 (563)
||+.|++++.| .+|++|++.+ .....+. .|...+.+++|+||| .++.++.|+ .|
T Consensus 140 Dg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i 219 (662)
T 3azo_A 140 ERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTEL 219 (662)
T ss_dssp TTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEE
T ss_pred CCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEE
Confidence 68899999887 6899999954 4456666 677888999999999 787777553 69
Q ss_pred EEEc-C-Cc---eeEEEe--cCCcEEEEEEccCCc-EEEEeCCC--cEEEEEcCCCc
Q 008510 56 KIWK-D-GV---CVQSIE--HPGCVWDAKFLENGD-IVTACSDG--VTRIWTVHSDK 102 (563)
Q Consensus 56 riWd-~-~~---~~~~l~--h~~~V~~v~~~p~g~-i~sgs~Dg--~Irvwd~~~~~ 102 (563)
++|| . .. ....+. |...+.+++|+|||+ ++++..|+ .|.+||..+++
T Consensus 220 ~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~ 276 (662)
T 3azo_A 220 KTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGA 276 (662)
T ss_dssp EEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCC
T ss_pred EEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCc
Confidence 9999 5 22 333343 467999999999999 66777788 56666665665
No 179
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=98.47 E-value=2.8e-06 Score=86.61 Aligned_cols=101 Identities=9% Similarity=-0.106 Sum_probs=73.1
Q ss_pred CCCEEEEEEC-CCc--EEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcE
Q 008510 2 PGVGIISASH-DCT--IRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCV 73 (563)
Q Consensus 2 ~g~~l~s~s~-Dgt--IrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V 73 (563)
||++|+.++. |+. |.+||+ +|+......+|...+.++.|+|+| .++.++.++.+++|| +++...... +...+
T Consensus 46 Dg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~ 125 (388)
T 3pe7_A 46 DGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWV 125 (388)
T ss_dssp TSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEE
T ss_pred CCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcc
Confidence 5888999888 774 778888 677766667777777678899999 899999999999999 666655555 44445
Q ss_pred EEEE--EccCCc-EEEE----------------------eCCCcEEEEEcCCCc
Q 008510 74 WDAK--FLENGD-IVTA----------------------CSDGVTRIWTVHSDK 102 (563)
Q Consensus 74 ~~v~--~~p~g~-i~sg----------------------s~Dg~Irvwd~~~~~ 102 (563)
.... ++|+|. ++.. ..++.|++||+.+++
T Consensus 126 ~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~ 179 (388)
T 3pe7_A 126 GYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGE 179 (388)
T ss_dssp EEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCC
T ss_pred cccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCc
Confidence 4444 478888 4421 234567777877765
No 180
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=98.44 E-value=1.6e-06 Score=97.16 Aligned_cols=95 Identities=9% Similarity=-0.010 Sum_probs=71.1
Q ss_pred CCCEEEEEECC---------CcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe
Q 008510 2 PGVGIISASHD---------CTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE 68 (563)
Q Consensus 2 ~g~~l~s~s~D---------gtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~ 68 (563)
||++++.+++| +.+.+||+ +|++ ..+.+|.+.+...+|+||| .++.++ |+.|++|+ ++++. .+.
T Consensus 72 dg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~-~~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~-~lt 148 (740)
T 4a5s_A 72 DGQFILLEYNYVKQWRHSYTASYDIYDLNKRQL-ITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSY-RIT 148 (740)
T ss_dssp TSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE-CCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCE-ECC
T ss_pred CCCEEEEEECCeeeEEEccceEEEEEECCCCcE-EEcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceE-EEc
Confidence 68899999987 55669999 5554 4577888999999999999 777774 78999999 44443 333
Q ss_pred ---cCCcE-----------------EEEEEccCCc-EEEEeCCCc-EEEEEcC
Q 008510 69 ---HPGCV-----------------WDAKFLENGD-IVTACSDGV-TRIWTVH 99 (563)
Q Consensus 69 ---h~~~V-----------------~~v~~~p~g~-i~sgs~Dg~-Irvwd~~ 99 (563)
+...+ ..+.|+|||+ |+.++.|.+ +++|++.
T Consensus 149 ~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~ 201 (740)
T 4a5s_A 149 WTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYS 201 (740)
T ss_dssp SCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEE
T ss_pred CCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEE
Confidence 22223 3489999999 888776654 8888764
No 181
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=98.41 E-value=1.2e-06 Score=89.69 Aligned_cols=95 Identities=7% Similarity=0.002 Sum_probs=78.3
Q ss_pred CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCCeEEEEeCCCcEEEEc--CCceeEEEecCCcEEEEEE
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWK--DGVCVQSIEHPGCVWDAKF 78 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g~l~s~s~D~tvriWd--~~~~~~~l~h~~~V~~v~~ 78 (563)
||+.++.| .++.|++||+ +.........|...|.++.+.+. .++.++.||++.+|| ++...+ +...|.|++|
T Consensus 96 d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p-~~av~~~dG~L~v~dl~~~~~~~---~~~~Vs~v~W 170 (388)
T 1xip_A 96 HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN-TLVILNSVNDLSALDLRTKSTKQ---LAQNVTSFDV 170 (388)
T ss_dssp ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSS-EEEEEETTSEEEEEETTTCCEEE---EEESEEEEEE
T ss_pred CCCEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecCC-CEEEEECCCCEEEEEccCCcccc---ccCCceEEEE
Confidence 46788888 8899999998 44455567788888998887755 488899999999999 455433 4458999999
Q ss_pred ccCCcEEEEeCCCcEEEEEcCCCc
Q 008510 79 LENGDIVTACSDGVTRIWTVHSDK 102 (563)
Q Consensus 79 ~p~g~i~sgs~Dg~Irvwd~~~~~ 102 (563)
+|+| ++.|+.||++++|+.+.+.
T Consensus 171 SpkG-~~vg~~dg~i~~~~~~~~~ 193 (388)
T 1xip_A 171 TNSQ-LAVLLKDRSFQSFAWRNGE 193 (388)
T ss_dssp CSSE-EEEEETTSCEEEEEEETTE
T ss_pred cCCc-eEEEEcCCcEEEEcCCCcc
Confidence 9999 8889999999999988776
No 182
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=98.33 E-value=4.6e-05 Score=76.27 Aligned_cols=136 Identities=15% Similarity=0.037 Sum_probs=92.2
Q ss_pred CCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEecCC------c
Q 008510 3 GVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIEHPG------C 72 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~h~~------~ 72 (563)
++.+++...+++|.+||. +++.+.++.. ......+++++++ .+++...+++|.+|| +++....+.... .
T Consensus 54 ~~lyv~~~~~~~v~viD~~t~~~~~~i~~-~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~ 132 (328)
T 3dsm_A 54 GIGWIVVNNSHVIFAIDINTFKEVGRITG-FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGS 132 (328)
T ss_dssp TEEEEEEGGGTEEEEEETTTCCEEEEEEC-CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCB
T ss_pred CEEEEEEcCCCEEEEEECcccEEEEEcCC-CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCC
Confidence 345666666899999999 8999888864 4667899998988 555555899999999 677777777333 5
Q ss_pred EEEEEEccCCcEEEEe--CCCcEEEEEcCCCceeceeeecccccc----c-ceeEEeeccC----------CceEEEeCC
Q 008510 73 VWDAKFLENGDIVTAC--SDGVTRIWTVHSDKVADSLELEAYASE----L-SQYKLCRKKV----------GGLKLEDLP 135 (563)
Q Consensus 73 V~~v~~~p~g~i~sgs--~Dg~Irvwd~~~~~~~~~~~~~~~~~~----v-~~~~~~~~~~----------~~i~~~d~~ 135 (563)
...+++ .++++..+. .++.|.+||..+++............. . ....+....+ +.|.++|..
T Consensus 133 p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~ 211 (328)
T 3dsm_A 133 TEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAE 211 (328)
T ss_dssp CCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETT
T ss_pred cceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECC
Confidence 667777 556655444 489999999999875543332211111 1 2333333332 678888887
Q ss_pred CCcee
Q 008510 136 GLEAL 140 (563)
Q Consensus 136 ~~~~l 140 (563)
+.++.
T Consensus 212 t~~v~ 216 (328)
T 3dsm_A 212 TFTVE 216 (328)
T ss_dssp TTEEE
T ss_pred CCeEE
Confidence 66654
No 183
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=98.30 E-value=5.5e-06 Score=92.10 Aligned_cols=98 Identities=8% Similarity=-0.007 Sum_probs=68.3
Q ss_pred CCCEEE-----EEECCCcEEEEcC-CCceeEEEecCCCcE--EEEEEcCCC-eEEEEeCCCc-------------EEEEc
Q 008510 2 PGVGII-----SASHDCTIRLWAL-TGQVLMEMVGHTAIV--YSIDSHASG-LIVSGSEDRF-------------AKIWK 59 (563)
Q Consensus 2 ~g~~l~-----s~s~DgtIrlWd~-~g~~i~~l~gH~~~V--~~v~~~p~g-~l~s~s~D~t-------------vriWd 59 (563)
||++++ +|+.+.+|++||+ +|+.+. ..+...+ .+++|+||| .|+.++.|.+ |++|+
T Consensus 131 DG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~ 208 (695)
T 2bkl_A 131 DGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHT 208 (695)
T ss_dssp TSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEE
T ss_pred CCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEE
Confidence 578887 5555678999999 666541 1122222 689999999 8888888877 99999
Q ss_pred --CCce--eEEEe---cCCcEEEEEEccCCc-EEEEeCCC----cEEEEEcCCC
Q 008510 60 --DGVC--VQSIE---HPGCVWDAKFLENGD-IVTACSDG----VTRIWTVHSD 101 (563)
Q Consensus 60 --~~~~--~~~l~---h~~~V~~v~~~p~g~-i~sgs~Dg----~Irvwd~~~~ 101 (563)
++.. ...+. ++..+.++.|+|+|+ |+.++.++ .|++|+..++
T Consensus 209 l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~ 262 (695)
T 2bkl_A 209 LGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEK 262 (695)
T ss_dssp TTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCS
T ss_pred CCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCC
Confidence 4431 22232 456899999999999 77766665 6677765444
No 184
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=98.28 E-value=0.00018 Score=71.49 Aligned_cols=134 Identities=19% Similarity=0.105 Sum_probs=85.8
Q ss_pred CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCC----CcEEEEc-CCceeE-EEe---cC
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSED----RFAKIWK-DGVCVQ-SIE---HP 70 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D----~tvriWd-~~~~~~-~l~---h~ 70 (563)
+|+.++++..++.|.+||. +++.......+...+.+++++|+| .++++..+ +.|.+|| .+..+. .+. +.
T Consensus 55 ~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~ 134 (333)
T 2dg1_A 55 QGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTA 134 (333)
T ss_dssp TSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSC
T ss_pred CCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccC
Confidence 4677778888999999999 566554444677889999999999 66666666 6899999 443333 333 33
Q ss_pred CcEEEEEEccCCcEEEEeC-------CCcEEEEEcCCCceeceee-e---cccccccc-e-eEEeeccCCceEEEeCC
Q 008510 71 GCVWDAKFLENGDIVTACS-------DGVTRIWTVHSDKVADSLE-L---EAYASELS-Q-YKLCRKKVGGLKLEDLP 135 (563)
Q Consensus 71 ~~V~~v~~~p~g~i~sgs~-------Dg~Irvwd~~~~~~~~~~~-~---~~~~~~v~-~-~~~~~~~~~~i~~~d~~ 135 (563)
..++++++.|+|++..++. .+.|..||..+++...... . ....-... . ..++....+.|.+||..
T Consensus 135 ~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~ 212 (333)
T 2dg1_A 135 YCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALE 212 (333)
T ss_dssp CCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred CcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEec
Confidence 4799999999999555544 2456666665544221110 0 01100111 2 33444556788888884
No 185
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.28 E-value=2.2e-07 Score=95.15 Aligned_cols=136 Identities=10% Similarity=0.064 Sum_probs=74.3
Q ss_pred CCCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEecC--CcEE
Q 008510 1 MPGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIEHP--GCVW 74 (563)
Q Consensus 1 ~~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~h~--~~V~ 74 (563)
++++.+++++.||.|+.||. +|+.+.++.. +.+.+..+..++ .+++++.|+.|+.|| +++.+..+... ..+.
T Consensus 7 v~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~ 84 (369)
T 2hz6_A 7 LPETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQ 84 (369)
T ss_dssp -CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHT
T ss_pred eeCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccc
Confidence 36789999999999999998 9999998886 455555556677 777788999999999 78877666521 1111
Q ss_pred E-EEEccCCcEEEEeCCCcEEEEEcCCCceeceeeeccc--ccccceeEEeeccCCceEEEeCCCCc
Q 008510 75 D-AKFLENGDIVTACSDGVTRIWTVHSDKVADSLELEAY--ASELSQYKLCRKKVGGLKLEDLPGLE 138 (563)
Q Consensus 75 ~-v~~~p~g~i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~i~~~d~~~~~ 138 (563)
+ ..+..++.+++|+.|+.|+.||.++++..-....... ........+.+..++.+..||..+++
T Consensus 85 ~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~~~~~p~~~~v~~~~~dg~v~a~d~~tG~ 151 (369)
T 2hz6_A 85 ASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFADSLSPSTSLLYLGRTEYTITMYDTKTRE 151 (369)
T ss_dssp TCSCC-----CCCCEEEEEEEEECCC----------------------EEEEEEEEEEECCCSSSSS
T ss_pred cCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCCcccccccCCEEEEEecCCEEEEEECCCCC
Confidence 1 1111344588888999999999999874322211110 00012333344445566666655443
No 186
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=98.24 E-value=1.7e-05 Score=88.30 Aligned_cols=98 Identities=9% Similarity=0.074 Sum_probs=70.9
Q ss_pred CCCEEEEEECCC-----cEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCc----------------EEEE
Q 008510 2 PGVGIISASHDC-----TIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRF----------------AKIW 58 (563)
Q Consensus 2 ~g~~l~s~s~Dg-----tIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~t----------------vriW 58 (563)
||++++.++.++ +|++||+ +|+.+.....+. .+.+++|+||| .|+.++.|+. |++|
T Consensus 135 Dg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~-~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 213 (710)
T 2xdw_A 135 DGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERV-KFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYH 213 (710)
T ss_dssp TSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEE-CSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEE
T ss_pred CCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCc-ccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEE
Confidence 578888776644 8999999 677665332222 26689999999 7888888776 9999
Q ss_pred c--CCce--eEEEe---cCCcEEEEEEccCCc-EEEEeC-----CCcEEEEEcCC
Q 008510 59 K--DGVC--VQSIE---HPGCVWDAKFLENGD-IVTACS-----DGVTRIWTVHS 100 (563)
Q Consensus 59 d--~~~~--~~~l~---h~~~V~~v~~~p~g~-i~sgs~-----Dg~Irvwd~~~ 100 (563)
+ ++.. ...+. |+..+..++|+|||+ |+.++. +..|++||+.+
T Consensus 214 ~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~ 268 (710)
T 2xdw_A 214 VLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQ 268 (710)
T ss_dssp ETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGG
T ss_pred ECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcc
Confidence 9 4432 22223 455688999999999 666554 67899999876
No 187
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=98.17 E-value=8.6e-05 Score=71.28 Aligned_cols=137 Identities=7% Similarity=-0.090 Sum_probs=84.4
Q ss_pred CCCEEE-EEECCCcEEEEcCCCceeEEE-ecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc-CCceeEEEe--cCCcEEE
Q 008510 2 PGVGII-SASHDCTIRLWALTGQVLMEM-VGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-DGVCVQSIE--HPGCVWD 75 (563)
Q Consensus 2 ~g~~l~-s~s~DgtIrlWd~~g~~i~~l-~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd-~~~~~~~l~--h~~~V~~ 75 (563)
+|+.++ +.+.++.|.+|+..+.....+ ..+...+.+++++++| .+++.. ++.|.+|+ .+.....+. ....+++
T Consensus 34 ~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~~~~~~~p~~ 112 (270)
T 1rwi_B 34 AGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVLPFDGLNYPEG 112 (270)
T ss_dssp TCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEECCCCSCSSEEE
T ss_pred CCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeeeecCCcCCCcc
Confidence 366666 446788999999843322222 2344567899999998 555555 88999999 665555554 2257999
Q ss_pred EEEccCCc-EEEEeCCCcEEEEEcCCCceeceee-----ecccc-cccceeEEeeccCCceEEEeCCCCce
Q 008510 76 AKFLENGD-IVTACSDGVTRIWTVHSDKVADSLE-----LEAYA-SELSQYKLCRKKVGGLKLEDLPGLEA 139 (563)
Q Consensus 76 v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~-----~~~~~-~~v~~~~~~~~~~~~i~~~d~~~~~~ 139 (563)
+++.|+|+ +++...++.|.+|+..+........ ..... ..-....++....+.|..||..+...
T Consensus 113 i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~ 183 (270)
T 1rwi_B 113 LAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQ 183 (270)
T ss_dssp EEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCE
T ss_pred eEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCce
Confidence 99999999 4555667899999866544221100 00110 01123444445567888888776544
No 188
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=98.16 E-value=5.7e-05 Score=75.18 Aligned_cols=96 Identities=13% Similarity=0.090 Sum_probs=74.3
Q ss_pred EEEEECCCcEEEEcCCCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEEEEEccC
Q 008510 6 IISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDAKFLEN 81 (563)
Q Consensus 6 l~s~s~DgtIrlWd~~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~v~~~p~ 81 (563)
+++.+.+++++.| .++....+.+|...+.+++|+|+| .++++..++.|.+|| +++...... +...+.+++++|+
T Consensus 20 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~d 97 (333)
T 2dg1_A 20 AVPIISESELQTI--TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKD 97 (333)
T ss_dssp SSCCCCGGGSCEE--ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTT
T ss_pred eeEEeecccCccc--ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCC
Confidence 3445678888999 566777888888889999999999 677888899999999 455444442 5668999999999
Q ss_pred CcE-EEEeCC----CcEEEEEcCCCce
Q 008510 82 GDI-VTACSD----GVTRIWTVHSDKV 103 (563)
Q Consensus 82 g~i-~sgs~D----g~Irvwd~~~~~~ 103 (563)
|++ ++...+ +.|.+||..+++.
T Consensus 98 g~l~v~~~~~~~~~~~i~~~d~~~~~~ 124 (333)
T 2dg1_A 98 GRLFVCYLGDFKSTGGIFAATENGDNL 124 (333)
T ss_dssp SCEEEEECTTSSSCCEEEEECTTSCSC
T ss_pred CcEEEEeCCCCCCCceEEEEeCCCCEE
Confidence 995 444444 5899999987763
No 189
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=98.14 E-value=0.00024 Score=70.94 Aligned_cols=160 Identities=11% Similarity=-0.032 Sum_probs=104.8
Q ss_pred CCcEEEEcC-CCceeEEEe----c--CCCcEEEEEEcCCCeEEEEeCCCcEEEEc--CCceeEEEecCCcEEEEEEccCC
Q 008510 12 DCTIRLWAL-TGQVLMEMV----G--HTAIVYSIDSHASGLIVSGSEDRFAKIWK--DGVCVQSIEHPGCVWDAKFLENG 82 (563)
Q Consensus 12 DgtIrlWd~-~g~~i~~l~----g--H~~~V~~v~~~p~g~l~s~s~D~tvriWd--~~~~~~~l~h~~~V~~v~~~p~g 82 (563)
+++|.+||. +++....+. + ......++.+..+..+++...+++|.+|| +++.+.++......+.++++++|
T Consensus 16 ~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p~~i~~~~~g 95 (328)
T 3dsm_A 16 NATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRDGIGWIVVNNSHVIFAIDINTFKEVGRITGFTSPRYIHFLSDE 95 (328)
T ss_dssp CBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEETTEEEEEEGGGTEEEEEETTTCCEEEEEECCSSEEEEEEEETT
T ss_pred CceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEECCEEEEEEcCCCEEEEEECcccEEEEEcCCCCCCcEEEEeCCC
Confidence 899999999 677655441 1 22456778875433666667789999999 78888888766689999999998
Q ss_pred cEEEEe-CCCcEEEEEcCCCceeceeeecc------cccc---cc-eeEEeec-cCCceEEEeCCCCceeeec-------
Q 008510 83 DIVTAC-SDGVTRIWTVHSDKVADSLELEA------YASE---LS-QYKLCRK-KVGGLKLEDLPGLEALQIP------- 143 (563)
Q Consensus 83 ~i~sgs-~Dg~Irvwd~~~~~~~~~~~~~~------~~~~---v~-~~~~~~~-~~~~i~~~d~~~~~~l~~~------- 143 (563)
++..+. .++.|.+||..+++......... .... .. ...++.. .++.|.++|..+.+.....
T Consensus 96 ~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~ 175 (328)
T 3dsm_A 96 KAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPT 175 (328)
T ss_dssp EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEETTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBC
T ss_pred eEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCcc
Confidence 855444 89999999999987554333322 1111 11 2223333 3678999998876544321
Q ss_pred ---ccCCCeEEEEecCC---------CeEEEEEecccceE
Q 008510 144 ---GTNAGQTKVVREGD---------NGVAYSWDMKEQKW 171 (563)
Q Consensus 144 ---g~~dg~~~l~~~~~---------~~~~~~wd~~~~~w 171 (563)
..++|.+.+...++ ...++.+|..++..
T Consensus 176 ~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v 215 (328)
T 3dsm_A 176 SLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTV 215 (328)
T ss_dssp CCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEE
T ss_pred ceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeE
Confidence 23566654444332 24577788766653
No 190
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.14 E-value=3.7e-05 Score=78.14 Aligned_cols=101 Identities=4% Similarity=-0.150 Sum_probs=71.9
Q ss_pred CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEE-------------------EEEcCCC-eEEEE-----eCCCcE
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYS-------------------IDSHASG-LIVSG-----SEDRFA 55 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~-------------------v~~~p~g-~l~s~-----s~D~tv 55 (563)
||++|+.++.++.|++|++ +++.......+...... +.++|++ .++.+ ..+..|
T Consensus 91 dg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l 170 (396)
T 3c5m_A 91 DERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRL 170 (396)
T ss_dssp TSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEE
T ss_pred CCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceE
Confidence 5789999999999999999 66666556656654444 3557776 33332 456789
Q ss_pred EEEc--CCceeEEEecCCcEEEEEEcc-CCc-EEEEeCC------CcEEEEEcCCCc
Q 008510 56 KIWK--DGVCVQSIEHPGCVWDAKFLE-NGD-IVTACSD------GVTRIWTVHSDK 102 (563)
Q Consensus 56 riWd--~~~~~~~l~h~~~V~~v~~~p-~g~-i~sgs~D------g~Irvwd~~~~~ 102 (563)
.+|| +++......+...+..+.|+| +|. |+..+.+ ..|.+||...++
T Consensus 171 ~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~ 227 (396)
T 3c5m_A 171 IKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSN 227 (396)
T ss_dssp EEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCC
T ss_pred EEEECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCc
Confidence 9999 555554445777899999999 777 7665543 468888987654
No 191
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=98.12 E-value=7.4e-05 Score=74.68 Aligned_cols=82 Identities=10% Similarity=-0.007 Sum_probs=56.6
Q ss_pred CCCEEEEEE---------CCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCC---Cc--EEEEc--CCce
Q 008510 2 PGVGIISAS---------HDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSED---RF--AKIWK--DGVC 63 (563)
Q Consensus 2 ~g~~l~s~s---------~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D---~t--vriWd--~~~~ 63 (563)
||++++... .++.|.+|++ +++. ..+ ..+.+++|+||| .++.++.+ +. |.+|+ +++.
T Consensus 23 dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~ 97 (347)
T 2gop_A 23 KGELVAYVLTKANLKDNKYENTIVIENLKNNAR-RFI----ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSS 97 (347)
T ss_dssp ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCE-EEE----ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEE
T ss_pred CCcEEEEEEeecCcccCCccceEEEEeCCCCce-EEc----ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCce
Confidence 466666542 3678999999 4543 444 567899999999 77766654 33 67777 4454
Q ss_pred eEEEecCCcEEEEEEccCCc-EEEEeC
Q 008510 64 VQSIEHPGCVWDAKFLENGD-IVTACS 89 (563)
Q Consensus 64 ~~~l~h~~~V~~v~~~p~g~-i~sgs~ 89 (563)
.+...++. +.+++|+|+|+ |+.++.
T Consensus 98 ~~l~~~~~-~~~~~wspdg~~l~~~~~ 123 (347)
T 2gop_A 98 KKILEAKN-IRSLEWNEDSRKLLIVGF 123 (347)
T ss_dssp EEEEEESE-EEEEEECTTSSEEEEEEE
T ss_pred EEEEcCCC-ccceeECCCCCEEEEEEc
Confidence 44444555 99999999998 777664
No 192
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=98.08 E-value=8.1e-05 Score=72.67 Aligned_cols=103 Identities=19% Similarity=0.278 Sum_probs=83.2
Q ss_pred CCCEEEEEEC-CCcEEEEcCCCceeEEEe------cCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc-CCceeEEEecCCc
Q 008510 2 PGVGIISASH-DCTIRLWALTGQVLMEMV------GHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-DGVCVQSIEHPGC 72 (563)
Q Consensus 2 ~g~~l~s~s~-DgtIrlWd~~g~~i~~l~------gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd-~~~~~~~l~h~~~ 72 (563)
+|+.+++.+. ++.|..++.+|+.+.++. ++......+++.++| .+++...++.|..|| .|+.+.++..+..
T Consensus 87 dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~G~~~w~~~~~~~ 166 (276)
T 3no2_A 87 DGNALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPNGQLLNSVKLSGT 166 (276)
T ss_dssp TSCEEEEEESTTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTTSCEEEEEECSSC
T ss_pred CCCEEEEecCCCCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCCCCEEEEEECCCC
Confidence 5788888887 777777788899888775 222345567788898 889999999999999 9999999986667
Q ss_pred EEEEEEccCCc-EEEEeCCCcEEEEEcCCCcee
Q 008510 73 VWDAKFLENGD-IVTACSDGVTRIWTVHSDKVA 104 (563)
Q Consensus 73 V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~ 104 (563)
.+++...++|+ +++++.++.|..||..+++..
T Consensus 167 ~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~ 199 (276)
T 3no2_A 167 PFSSAFLDNGDCLVACGDAHCFVQLNLESNRIV 199 (276)
T ss_dssp CCEEEECTTSCEEEECBTTSEEEEECTTTCCEE
T ss_pred ccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEE
Confidence 77888999999 666777778999999988844
No 193
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=98.07 E-value=6.6e-05 Score=73.54 Aligned_cols=83 Identities=16% Similarity=0.107 Sum_probs=64.0
Q ss_pred CC-EEEEEECCCcEEEEcCCCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-c----CCcE
Q 008510 3 GV-GIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-H----PGCV 73 (563)
Q Consensus 3 g~-~l~s~s~DgtIrlWd~~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h----~~~V 73 (563)
|+ .++++..++.|..|+..+. ...+..+...+.+++++|+| .+++...++.|.+|| +++...... . ...+
T Consensus 39 g~~l~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~ 117 (296)
T 3e5z_A 39 RSAVIFSDVRQNRTWAWSDDGQ-LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSP 117 (296)
T ss_dssp GTEEEEEEGGGTEEEEEETTSC-EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCC
T ss_pred CCEEEEEeCCCCEEEEEECCCC-eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCC
Confidence 55 6888888999999999655 77888888899999999999 666666678999999 565443332 1 1256
Q ss_pred EEEEEccCCcE-EE
Q 008510 74 WDAKFLENGDI-VT 86 (563)
Q Consensus 74 ~~v~~~p~g~i-~s 86 (563)
..+++.|+|++ ++
T Consensus 118 ~~i~~d~~G~l~vt 131 (296)
T 3e5z_A 118 NDVCLAPDGSLWFS 131 (296)
T ss_dssp CCEEECTTSCEEEE
T ss_pred CCEEECCCCCEEEE
Confidence 78999999994 44
No 194
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=97.98 E-value=0.00019 Score=73.31 Aligned_cols=128 Identities=12% Similarity=-0.023 Sum_probs=85.3
Q ss_pred CCEEEEEECCCcEEEEcC-CC-----------ceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEE
Q 008510 3 GVGIISASHDCTIRLWAL-TG-----------QVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSI 67 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~-~g-----------~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l 67 (563)
...+++|+.|+ +++|++ +. +.... ..+.. |+.++| ++ .++.+ .++.|++|| +......+
T Consensus 49 ~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~-~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~ 122 (388)
T 1xip_A 49 KSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWE-KEIPD-VIFVCF--HGDQVLVS-TRNALYSLDLEELSEFRTV 122 (388)
T ss_dssp TTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEE-EECTT-EEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEEEE
T ss_pred CCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEE-eeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhhhccCcc
Confidence 46788999885 667986 22 22222 34677 999999 66 77777 889999999 33333444
Q ss_pred e-cCCcEEEEEEccCCcEEEEeCCCcEEEEEcCCCceece-eeecccccccceeEEeeccCCceEEEeCCCCc
Q 008510 68 E-HPGCVWDAKFLENGDIVTACSDGVTRIWTVHSDKVADS-LELEAYASELSQYKLCRKKVGGLKLEDLPGLE 138 (563)
Q Consensus 68 ~-h~~~V~~v~~~p~g~i~sgs~Dg~Irvwd~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~i~~~d~~~~~ 138 (563)
. |...+.++.+.+. .++++..||.+.+||+.++..... ..+.++.-+..+ ...+..+|.+++|+..+.+
T Consensus 123 ~~~~~~v~~i~~~~p-~~av~~~dG~L~v~dl~~~~~~~~~~~Vs~v~WSpkG-~~vg~~dg~i~~~~~~~~~ 193 (388)
T 1xip_A 123 TSFEKPVFQLKNVNN-TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQ-LAVLLKDRSFQSFAWRNGE 193 (388)
T ss_dssp EECSSCEEEEEECSS-EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSE-EEEEETTSCEEEEEEETTE
T ss_pred ceeecceeeEEecCC-CEEEEECCCCEEEEEccCCccccccCCceEEEEcCCc-eEEEEcCCcEEEEcCCCcc
Confidence 4 6677888887765 399999999999999997763221 111222222223 3346677888888766554
No 195
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=97.94 E-value=0.00013 Score=72.83 Aligned_cols=85 Identities=13% Similarity=0.062 Sum_probs=57.7
Q ss_pred CCCEEEEEECC---Cc--EEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCC----------------------
Q 008510 2 PGVGIISASHD---CT--IRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSED---------------------- 52 (563)
Q Consensus 2 ~g~~l~s~s~D---gt--IrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D---------------------- 52 (563)
||++|+.++.+ +. |.+|++ +|+...... +.. +.+++|+|+| .++.++.+
T Consensus 69 Dg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~-~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 146 (347)
T 2gop_A 69 DGKKIAFMRANEEKKVSEIWVADLETLSSKKILE-AKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGF 146 (347)
T ss_dssp TSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEE-ESE-EEEEEECTTSSEEEEEEECCCC---------CCCC------
T ss_pred CCCEEEEEEeccCCCcceEEEEECCCCceEEEEc-CCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCccc
Confidence 57888888765 33 777788 555544443 334 9999999999 67766532
Q ss_pred -----CcEEEEc--CCceeEEEecCCcEEEEEEccCCcEE-EEeCC
Q 008510 53 -----RFAKIWK--DGVCVQSIEHPGCVWDAKFLENGDIV-TACSD 90 (563)
Q Consensus 53 -----~tvriWd--~~~~~~~l~h~~~V~~v~~~p~g~i~-sgs~D 90 (563)
..|.+|+ +++.++.+..+ .+..++|+|+| ++ ++..+
T Consensus 147 ~~~~~~~l~~~d~~~~~~~~~l~~~-~~~~~~~spdg-~~~~~~~~ 190 (347)
T 2gop_A 147 FDGEKTTFWIFDTESEEVIEEFEKP-RFSSGIWHRDK-IVVNVPHR 190 (347)
T ss_dssp ---CEEEEEEEETTTTEEEEEEEEE-TTCEEEEETTE-EEEEEECC
T ss_pred ccCccceEEEEECCCCeEEeeecCC-CcccccCCCCe-EEEEEecc
Confidence 4688888 55543555544 88899999999 54 44433
No 196
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=97.92 E-value=0.00041 Score=67.74 Aligned_cols=101 Identities=16% Similarity=0.107 Sum_probs=68.9
Q ss_pred CCCEEEEEECCCcEEEEcC-CCceeEEEecC----CCcEEEEEEcCCC-eEEEEeC-----------------CCcEEEE
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGH----TAIVYSIDSHASG-LIVSGSE-----------------DRFAKIW 58 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH----~~~V~~v~~~p~g-~l~s~s~-----------------D~tvriW 58 (563)
+|+++++.+.++.|.+||. +|+.......+ ...+++++++|+| .+++.+. .+.|..+
T Consensus 79 dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~ 158 (296)
T 3e5z_A 79 QGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRL 158 (296)
T ss_dssp TCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEE
T ss_pred CCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEE
Confidence 4677776666789999999 77764433222 2346789999999 6666321 2345555
Q ss_pred c-CCceeEEEecCCcEEEEEEccCCc-EEEEeCCCcEEEEEcC-CCc
Q 008510 59 K-DGVCVQSIEHPGCVWDAKFLENGD-IVTACSDGVTRIWTVH-SDK 102 (563)
Q Consensus 59 d-~~~~~~~l~h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~-~~~ 102 (563)
+ .++......+......++|+|+|+ +++.+.++.|++|++. +++
T Consensus 159 ~~~g~~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~ 205 (296)
T 3e5z_A 159 APDGTLSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGE 205 (296)
T ss_dssp CTTSCEEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSC
T ss_pred CCCCCEEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCc
Confidence 5 544333333556789999999999 7666778999999997 444
No 197
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=97.82 E-value=0.0022 Score=65.28 Aligned_cols=133 Identities=14% Similarity=0.084 Sum_probs=85.4
Q ss_pred CCCEEEEEEC--CC---cEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEe----------CCCcEEEEc--CCc
Q 008510 2 PGVGIISASH--DC---TIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGS----------EDRFAKIWK--DGV 62 (563)
Q Consensus 2 ~g~~l~s~s~--Dg---tIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s----------~D~tvriWd--~~~ 62 (563)
++++++.+.. +. +|.+||. +++.+.++..-... .++++||| .+..+. .+++|.+|| +.+
T Consensus 31 ~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~ 108 (373)
T 2mad_H 31 DGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFL 108 (373)
T ss_pred CCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCc
Confidence 3555555542 22 8899999 88888887654444 89999999 555553 367899999 677
Q ss_pred eeEEEecC--------CcEEEEEEccCCc-EEEEeC--CCcEEEEEcCCCceece-eeeccc---ccccceeEEeeccCC
Q 008510 63 CVQSIEHP--------GCVWDAKFLENGD-IVTACS--DGVTRIWTVHSDKVADS-LELEAY---ASELSQYKLCRKKVG 127 (563)
Q Consensus 63 ~~~~l~h~--------~~V~~v~~~p~g~-i~sgs~--Dg~Irvwd~~~~~~~~~-~~~~~~---~~~v~~~~~~~~~~~ 127 (563)
.+.++..+ ..-..++++|+|+ ++.+.. ++.|.++| .+++.... ..+... ...-....+....++
T Consensus 109 ~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg 187 (373)
T 2mad_H 109 PIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTCYHIHPGAPSTFYLLCAQG 187 (373)
T ss_pred EEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCceEEEEeCCCceEEEEcCCC
Confidence 77777532 2356899999999 666653 57899999 98875543 332211 000011223344566
Q ss_pred ceEEEeCCCCc
Q 008510 128 GLKLEDLPGLE 138 (563)
Q Consensus 128 ~i~~~d~~~~~ 138 (563)
.+..+|. ...
T Consensus 188 ~~~~vd~-~g~ 197 (373)
T 2mad_H 188 GLAKTDH-AGG 197 (373)
T ss_pred CEEEEEC-CCc
Confidence 7777776 443
No 198
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=97.79 E-value=0.0015 Score=62.47 Aligned_cols=100 Identities=8% Similarity=-0.010 Sum_probs=70.8
Q ss_pred CCCEEEEEECCCcEEEEcCCCceeEEEec-CCCcEEEEEEcCCC-eEEEEeCCCcEEEEc-CCceeEEEe--cCCcEEEE
Q 008510 2 PGVGIISASHDCTIRLWALTGQVLMEMVG-HTAIVYSIDSHASG-LIVSGSEDRFAKIWK-DGVCVQSIE--HPGCVWDA 76 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~~g~~i~~l~g-H~~~V~~v~~~p~g-~l~s~s~D~tvriWd-~~~~~~~l~--h~~~V~~v 76 (563)
+|+.+++.. ++.|.+||.++.....+.. ....+.+++++++| .+++...++.|.+|+ ......... ....++++
T Consensus 77 ~g~l~v~~~-~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i 155 (270)
T 1rwi_B 77 AGTVYVTDF-NNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGV 155 (270)
T ss_dssp TCCEEEEET-TTEEEEECTTCSCCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCE
T ss_pred CCCEEEEcC-CCEEEEEeCCCceEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeE
Confidence 356555555 8899999996655554442 33678999999999 677777788999999 222211122 22367899
Q ss_pred EEccCCcE-EEEeCCCcEEEEEcCCCc
Q 008510 77 KFLENGDI-VTACSDGVTRIWTVHSDK 102 (563)
Q Consensus 77 ~~~p~g~i-~sgs~Dg~Irvwd~~~~~ 102 (563)
++.++|++ ++...++.|++||.....
T Consensus 156 ~~~~~g~l~v~~~~~~~i~~~~~~~~~ 182 (270)
T 1rwi_B 156 AVDNSGNVYVTDTDNNRVVKLEAESNN 182 (270)
T ss_dssp EECTTCCEEEEEGGGTEEEEECTTTCC
T ss_pred EEeCCCCEEEEECCCCEEEEEecCCCc
Confidence 99999994 555567899999988765
No 199
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=97.79 E-value=0.00068 Score=75.12 Aligned_cols=100 Identities=11% Similarity=-0.012 Sum_probs=70.0
Q ss_pred CCCEEEEEECCCc-------------EEEEcC-CCc----eeEEEecCCCcEEEEEEcCCC-eEEEEeCCC----cEEEE
Q 008510 2 PGVGIISASHDCT-------------IRLWAL-TGQ----VLMEMVGHTAIVYSIDSHASG-LIVSGSEDR----FAKIW 58 (563)
Q Consensus 2 ~g~~l~s~s~Dgt-------------IrlWd~-~g~----~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~----tvriW 58 (563)
||+.|+.++.|.+ |++|++ ++. ++....+|...+.++.|+||| .++.++.++ .|++|
T Consensus 178 Dg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~ 257 (695)
T 2bkl_A 178 DSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWK 257 (695)
T ss_dssp TSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEE
T ss_pred CCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEE
Confidence 5789999999887 999999 554 343444566789999999999 666666555 57777
Q ss_pred c-CCceeEEEe-cCCcEEEEEEccCCcEEEEeC----CCcEEEEEcCCCc
Q 008510 59 K-DGVCVQSIE-HPGCVWDAKFLENGDIVTACS----DGVTRIWTVHSDK 102 (563)
Q Consensus 59 d-~~~~~~~l~-h~~~V~~v~~~p~g~i~sgs~----Dg~Irvwd~~~~~ 102 (563)
+ .+.....+. +...+....+ ++|.++..+. ++.|.+||+.++.
T Consensus 258 ~~~~~~~~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~ 306 (695)
T 2bkl_A 258 RPGEKDFRLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPA 306 (695)
T ss_dssp CTTCSSCEEEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCS
T ss_pred cCCCCceEEeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCC
Confidence 7 333344454 6656666666 5666544443 5789999997764
No 200
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.78 E-value=0.00028 Score=71.55 Aligned_cols=87 Identities=7% Similarity=-0.028 Sum_probs=61.3
Q ss_pred EcC-CCceeEEEecCCCc-----EEEEEEcCCC-eEEEEeC-CC--cEEEEc-CCceeEEEe-cCCcE-EEEEEccCCc-
Q 008510 18 WAL-TGQVLMEMVGHTAI-----VYSIDSHASG-LIVSGSE-DR--FAKIWK-DGVCVQSIE-HPGCV-WDAKFLENGD- 83 (563)
Q Consensus 18 Wd~-~g~~i~~l~gH~~~-----V~~v~~~p~g-~l~s~s~-D~--tvriWd-~~~~~~~l~-h~~~V-~~v~~~p~g~- 83 (563)
+|. +|+.+..+..+... +.+++|+|+| .++.++. ++ .+.+|+ .+.....+. +...+ ..+.|+|+|+
T Consensus 15 ~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~ 94 (396)
T 3c5m_A 15 VDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERA 94 (396)
T ss_dssp ECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSE
T ss_pred ecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCE
Confidence 355 78888888766443 7788999999 6665543 33 677888 444344444 44333 3478999999
Q ss_pred EEEEeCCCcEEEEEcCCCcee
Q 008510 84 IVTACSDGVTRIWTVHSDKVA 104 (563)
Q Consensus 84 i~sgs~Dg~Irvwd~~~~~~~ 104 (563)
|+.++.++.|++||+.+++..
T Consensus 95 l~~~~~~~~l~~~d~~~~~~~ 115 (396)
T 3c5m_A 95 FFYVKNELNLMKVDLETLEEQ 115 (396)
T ss_dssp EEEEETTTEEEEEETTTCCEE
T ss_pred EEEEEcCCcEEEEECCCCCcE
Confidence 889999999999999887643
No 201
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=97.77 E-value=0.0014 Score=67.71 Aligned_cols=100 Identities=10% Similarity=-0.009 Sum_probs=70.6
Q ss_pred CCCEEEEEECCCcEEEEcCCCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCC--cEEEEc--CCceeEEE----e-cCC
Q 008510 2 PGVGIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDR--FAKIWK--DGVCVQSI----E-HPG 71 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~--tvriWd--~~~~~~~l----~-h~~ 71 (563)
+|+.+++...++.|++||..+..+.++.+...... ++|+|++ .++.+..++ .|.+|+ .+.....+ . ...
T Consensus 141 ~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~ 219 (409)
T 3hrp_A 141 NNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSG 219 (409)
T ss_dssp TTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCS
T ss_pred CCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcC
Confidence 46667777777999999995433334433333334 9999998 777777766 688888 33334444 2 335
Q ss_pred cEEEEEEcc-CCcEEEEeCCCcEEEEEcCCCc
Q 008510 72 CVWDAKFLE-NGDIVTACSDGVTRIWTVHSDK 102 (563)
Q Consensus 72 ~V~~v~~~p-~g~i~sgs~Dg~Irvwd~~~~~ 102 (563)
.+++++++| +|.|..+..++.|+.||..++.
T Consensus 220 ~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~ 251 (409)
T 3hrp_A 220 KIGAVALDETEEWLYFVDSNKNFGRFNVKTQE 251 (409)
T ss_dssp CCCBCEECTTSSEEEEECTTCEEEEEETTTCC
T ss_pred CcEEEEEeCCCCeEEEEECCCcEEEEECCCCC
Confidence 789999999 6777667778899999998765
No 202
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=97.72 E-value=0.0041 Score=67.02 Aligned_cols=138 Identities=13% Similarity=0.029 Sum_probs=95.8
Q ss_pred CCCEEEEEECCCcEEEEcC---CCceeEEEecCCCcEEEEEEc----CCC-e-EEEEeCCCcEEEEc--CCceeEEEe--
Q 008510 2 PGVGIISASHDCTIRLWAL---TGQVLMEMVGHTAIVYSIDSH----ASG-L-IVSGSEDRFAKIWK--DGVCVQSIE-- 68 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~---~g~~i~~l~gH~~~V~~v~~~----p~g-~-l~s~s~D~tvriWd--~~~~~~~l~-- 68 (563)
||+++++++.|+.|.+||+ +++.+.++.... ....++|+ |+| . +++.-.+++|.|+| +.+.++++.
T Consensus 207 DGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~ 285 (567)
T 1qks_A 207 SGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTR 285 (567)
T ss_dssp TSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS-EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECC
T ss_pred CCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC-CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEecc
Confidence 6889999999999999999 677888887543 45789999 698 5 45555669999999 778887775
Q ss_pred ---------cCC-cEEEEEEccCCc--EEEEeCCCcEEEEEcCCCceeceeeec--cc----c-cccceeE-EeeccCCc
Q 008510 69 ---------HPG-CVWDAKFLENGD--IVTACSDGVTRIWTVHSDKVADSLELE--AY----A-SELSQYK-LCRKKVGG 128 (563)
Q Consensus 69 ---------h~~-~V~~v~~~p~g~--i~sgs~Dg~Irvwd~~~~~~~~~~~~~--~~----~-~~v~~~~-~~~~~~~~ 128 (563)
|+. .+..+..++++. +++...+|.|.++|..+.+......+. .+ . ..-..+. .+....+.
T Consensus 286 ~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~ 365 (567)
T 1qks_A 286 GMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNK 365 (567)
T ss_dssp EECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTE
T ss_pred ccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCe
Confidence 123 678888888766 566677899999998765422211111 11 0 1112333 34456678
Q ss_pred eEEEeCCCCcee
Q 008510 129 LKLEDLPGLEAL 140 (563)
Q Consensus 129 i~~~d~~~~~~l 140 (563)
|.++|..+.+..
T Consensus 366 V~ViD~~t~kl~ 377 (567)
T 1qks_A 366 LVVIDTKEGKLV 377 (567)
T ss_dssp EEEEETTTTEEE
T ss_pred EEEEECCCCcEE
Confidence 999999877654
No 203
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=97.67 E-value=0.0011 Score=74.00 Aligned_cols=99 Identities=11% Similarity=0.090 Sum_probs=66.5
Q ss_pred CCCEEEEEECC-----CcEEEEcC-CCceeEEEecCCCcEEEEEEcCCCeEEEEeCCCc--------------EEEEc--
Q 008510 2 PGVGIISASHD-----CTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRF--------------AKIWK-- 59 (563)
Q Consensus 2 ~g~~l~s~s~D-----gtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g~l~s~s~D~t--------------vriWd-- 59 (563)
||++++.++.+ .+|++||+ +|+.+.. ..+...+.+++|+||..|+.++.|+. |++|+
T Consensus 173 DG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~~~~~~~~~~~wspD~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lg 251 (741)
T 1yr2_A 173 DGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-ELKWVKFSGLAWLGNDALLYSRFAEPKEGQAFQALNYNQTVWLHRLG 251 (741)
T ss_dssp TSSEEEEEEEETTCSEEEEEEEETTTCCEEEE-EEEEEESCCCEESTTSEEEEEECCCC--------CCCCCEEEEEETT
T ss_pred CCCEEEEEEcCCCCceEEEEEEECCCCCCCCc-cCCCceeccEEEECCCEEEEEEecCcccccccccCCCCCEEEEEECC
Confidence 67888877664 46999999 6766543 22222235789999864566666554 88888
Q ss_pred CCce--eEEEe---cCCcEEEEEEccCCc-EEEEeCC-----CcEEEEEcCCC
Q 008510 60 DGVC--VQSIE---HPGCVWDAKFLENGD-IVTACSD-----GVTRIWTVHSD 101 (563)
Q Consensus 60 ~~~~--~~~l~---h~~~V~~v~~~p~g~-i~sgs~D-----g~Irvwd~~~~ 101 (563)
++.. ...+. ++..+.++.|+|||+ |+..+.+ ..|++||+.++
T Consensus 252 t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~ 304 (741)
T 1yr2_A 252 TPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNG 304 (741)
T ss_dssp SCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETT
T ss_pred CCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCC
Confidence 3331 22333 334689999999998 7666644 38999999776
No 204
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=97.66 E-value=1.1e-05 Score=82.47 Aligned_cols=99 Identities=7% Similarity=0.109 Sum_probs=52.1
Q ss_pred CCEEEEEECCCcEEEEcC-CCceeEEEecCCC-cEEE-EEEcCCCeEEEEeCCCcEEEEc--CCceeEEEecCCcEEEEE
Q 008510 3 GVGIISASHDCTIRLWAL-TGQVLMEMVGHTA-IVYS-IDSHASGLIVSGSEDRFAKIWK--DGVCVQSIEHPGCVWDAK 77 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~-~V~~-v~~~p~g~l~s~s~D~tvriWd--~~~~~~~l~h~~~V~~v~ 77 (563)
|..+++++.||.|+.||. +|+.+..+..+.. .+.+ ..+..++.+++++.|++++.|| +|+.+..+..... +.
T Consensus 49 g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~---~~ 125 (369)
T 2hz6_A 49 EPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFA---DS 125 (369)
T ss_dssp -CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTCSCC-----CCCCEEEEEEEEECCC------------------
T ss_pred CCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCCc---cc
Confidence 456777889999999999 8988777654422 1111 1111234777888899999999 7888877763332 34
Q ss_pred EccCCc-EEEEeCCCcEEEEEcCCCcee
Q 008510 78 FLENGD-IVTACSDGVTRIWTVHSDKVA 104 (563)
Q Consensus 78 ~~p~g~-i~sgs~Dg~Irvwd~~~~~~~ 104 (563)
++|++. +++++.|+.|+.||.++++..
T Consensus 126 ~~p~~~~v~~~~~dg~v~a~d~~tG~~~ 153 (369)
T 2hz6_A 126 LSPSTSLLYLGRTEYTITMYDTKTRELR 153 (369)
T ss_dssp -------EEEEEEEEEEECCCSSSSSCC
T ss_pred ccccCCEEEEEecCCEEEEEECCCCCEE
Confidence 556655 889999999999999998743
No 205
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=97.64 E-value=0.00022 Score=72.45 Aligned_cols=69 Identities=14% Similarity=0.209 Sum_probs=59.9
Q ss_pred CCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CC--ceeEEEe-cCCcEEEEEEccCCc
Q 008510 12 DCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DG--VCVQSIE-HPGCVWDAKFLENGD 83 (563)
Q Consensus 12 DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~--~~~~~l~-h~~~V~~v~~~p~g~ 83 (563)
+++|.+||+ +++.+.++..|. +++++|+|+| .+++++. ++|.+|| ++ +.+.++. +....+.++++|+|.
T Consensus 285 ~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 285 AAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp CSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred CceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 348999999 899999999887 8999999999 7777776 9999999 78 8888874 667889999999984
No 206
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=97.63 E-value=0.0061 Score=58.29 Aligned_cols=105 Identities=12% Similarity=0.084 Sum_probs=75.5
Q ss_pred CCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCCeEEEEeCCCcEEEEc--CCceeEEEecCCcEEEEEEc
Q 008510 3 GVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWK--DGVCVQSIEHPGCVWDAKFL 79 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g~l~s~s~D~tvriWd--~~~~~~~l~h~~~V~~v~~~ 79 (563)
+..+.+.+.+|.|+++|+ +|+.++++-....+--.+++..+...+..-.++.+.++| +.+.+.++..+..-|.++
T Consensus 65 ~~Ly~stG~~g~v~~iD~~Tgkv~~~~l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~eGwGLt-- 142 (268)
T 3nok_A 65 GHFFESTGHQGTLRQLSLESAQPVWMERLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTRYSGEGWGLC-- 142 (268)
T ss_dssp TEEEEEETTTTEEEECCSSCSSCSEEEECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEECSSCCCCEE--
T ss_pred CEEEEEcCCCCEEEEEECCCCcEEeEECCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEeCCCceeEEe--
Confidence 567888889999999999 898888772222233446665443555566788999999 889999998555456666
Q ss_pred cCCc-EEEEeCCCcEEEEEcCCCceeceeee
Q 008510 80 ENGD-IVTACSDGVTRIWTVHSDKVADSLEL 109 (563)
Q Consensus 80 p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~ 109 (563)
++|. ++.+..++.|.++|..+.+......+
T Consensus 143 ~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V 173 (268)
T 3nok_A 143 YWNGKLVRSDGGTMLTFHEPDGFALVGAVQV 173 (268)
T ss_dssp EETTEEEEECSSSEEEEECTTTCCEEEEEEC
T ss_pred cCCCEEEEECCCCEEEEEcCCCCeEEEEEEe
Confidence 4565 66555688999999999875544433
No 207
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=97.62 E-value=0.00077 Score=68.66 Aligned_cols=133 Identities=11% Similarity=0.084 Sum_probs=90.5
Q ss_pred CCCEEEEEEC-----CCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEe----------CCCcEEEEc--CCc
Q 008510 2 PGVGIISASH-----DCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGS----------EDRFAKIWK--DGV 62 (563)
Q Consensus 2 ~g~~l~s~s~-----DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s----------~D~tvriWd--~~~ 62 (563)
++++++.... +++|.+.|. +++.+.++..-..+ . ++++|+| .+..++ .+++|.+|| +.+
T Consensus 43 d~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~ 120 (386)
T 3sjl_D 43 DARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLL 120 (386)
T ss_dssp CTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC
T ss_pred CCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCe
Confidence 3556666554 689999999 88999888754555 4 9999999 554443 467899999 788
Q ss_pred eeEEEecC--------CcEEEEEEccCCc-EEEEeC--CCcEEEEEcCCCceeceeeecccc--ccc-ceeEEeeccCCc
Q 008510 63 CVQSIEHP--------GCVWDAKFLENGD-IVTACS--DGVTRIWTVHSDKVADSLELEAYA--SEL-SQYKLCRKKVGG 128 (563)
Q Consensus 63 ~~~~l~h~--------~~V~~v~~~p~g~-i~sgs~--Dg~Irvwd~~~~~~~~~~~~~~~~--~~v-~~~~~~~~~~~~ 128 (563)
.+.++.-+ ..-+.++++|||+ +..+.. ++.|.++|..+++......+.... ... ....+....+|.
T Consensus 121 v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~~~DG~ 200 (386)
T 3sjl_D 121 PTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGS 200 (386)
T ss_dssp EEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSC
T ss_pred EEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcceeecCCCceeEEECCCCC
Confidence 88888632 2567899999999 655543 689999999999866555443221 001 112224445666
Q ss_pred eEEEeCCC
Q 008510 129 LKLEDLPG 136 (563)
Q Consensus 129 i~~~d~~~ 136 (563)
+-+.++..
T Consensus 201 ~~~v~~~~ 208 (386)
T 3sjl_D 201 LAKVAFGT 208 (386)
T ss_dssp EEEEECCS
T ss_pred EEEEECCC
Confidence 66666654
No 208
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=97.62 E-value=0.0046 Score=62.48 Aligned_cols=206 Identities=11% Similarity=0.100 Sum_probs=119.3
Q ss_pred CCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCCeEEEEeCCCcEEEEc--CCceeEEEecCCcEE-----
Q 008510 3 GVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWK--DGVCVQSIEHPGCVW----- 74 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g~l~s~s~D~tvriWd--~~~~~~~l~h~~~V~----- 74 (563)
+..++.++.|+.|..+|. +|+.+.....+........+. ++.++.++.|+.+..+| +++.+........+.
T Consensus 103 ~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~-~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~ 181 (376)
T 3q7m_A 103 GGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVS-DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGE 181 (376)
T ss_dssp TTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEE-TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCC
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEE-CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCC
Confidence 567788899999999999 899887776543322222222 45778888999999999 888887776433322
Q ss_pred -EEEEccCCcEEEEeCCCcEEEEEcCCCceeceeeeccc------------ccc---cceeEEeeccCCceEEEeCCCCc
Q 008510 75 -DAKFLENGDIVTACSDGVTRIWTVHSDKVADSLELEAY------------ASE---LSQYKLCRKKVGGLKLEDLPGLE 138 (563)
Q Consensus 75 -~v~~~p~g~i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~------------~~~---v~~~~~~~~~~~~i~~~d~~~~~ 138 (563)
.... .++.++.++.++.+..+|..+++..-....... ... .....+....++.+..+|..+++
T Consensus 182 ~~~~~-~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~ 260 (376)
T 3q7m_A 182 SAPTT-AFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQ 260 (376)
T ss_dssp CCCEE-ETTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCC
T ss_pred CCcEE-ECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCc
Confidence 1112 255688888899999999998875432222110 000 12334445556788888876655
Q ss_pred eeeec--------ccCCCeEEEEecCCCeEEEEEecccce--EEEe---CcEeeCCCCCCCceeecCcccCcEEEEEcCC
Q 008510 139 ALQIP--------GTNAGQTKVVREGDNGVAYSWDMKEQK--WDKL---GEVVDGPDDGMNRPILDGIQYDYVFDVDIGD 205 (563)
Q Consensus 139 ~l~~~--------g~~dg~~~l~~~~~~~~~~~wd~~~~~--w~~~---g~v~~~~~~~~~~~~~~g~~~d~v~~vd~~d 205 (563)
.+-.. ...++.+ .+...+ ..++.+|..++. |... ........ -....+|.+...++++.++..+
T Consensus 261 ~~w~~~~~~~~~~~~~~~~l-~~~~~~-g~l~~~d~~tG~~~w~~~~~~~~~~~~~~-~~~~~l~v~~~~g~l~~~d~~t 337 (376)
T 3q7m_A 261 IMWKRELGSVNDFIVDGNRI-YLVDQN-DRVMALTIDGGVTLWTQSDLLHRLLTSPV-LYNGNLVVGDSEGYLHWINVED 337 (376)
T ss_dssp EEEEECCCCEEEEEEETTEE-EEEETT-CCEEEEETTTCCEEEEECTTTTSCCCCCE-EETTEEEEECTTSEEEEEETTT
T ss_pred EEeeccCCCCCCceEECCEE-EEEcCC-CeEEEEECCCCcEEEeecccCCCcccCCE-EECCEEEEEeCCCeEEEEECCC
Confidence 43221 1112222 222222 345566765554 5432 11111000 0134566666657788888888
Q ss_pred CCeeeeec
Q 008510 206 GEPTRKLP 213 (563)
Q Consensus 206 g~~~~~~~ 213 (563)
|+.+....
T Consensus 338 G~~~~~~~ 345 (376)
T 3q7m_A 338 GRFVAQQK 345 (376)
T ss_dssp CCEEEEEE
T ss_pred CcEEEEEe
Confidence 87665544
No 209
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=97.58 E-value=0.0051 Score=62.15 Aligned_cols=208 Identities=14% Similarity=0.108 Sum_probs=118.1
Q ss_pred CCCEEEEEECCCcEEEEcC-CCceeEEEecC---------CCcEEEEEEcCCCeEEEEeCCCcEEEEc--CCceeEEEec
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGH---------TAIVYSIDSHASGLIVSGSEDRFAKIWK--DGVCVQSIEH 69 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH---------~~~V~~v~~~p~g~l~s~s~D~tvriWd--~~~~~~~l~h 69 (563)
.+..++.++.++.|..+|. +|+.+.++... ...+.+.-...++.++.++.|+.|..+| +++.+.....
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~ 131 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKV 131 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeC
Confidence 3567888888999999999 89988777653 2233332222345777888999999999 7888877764
Q ss_pred CCcEEEEEEccCCcEEEEeCCCcEEEEEcCCCceeceeeeccc-------cc--ccceeEEeeccCCceEEEeCCCCcee
Q 008510 70 PGCVWDAKFLENGDIVTACSDGVTRIWTVHSDKVADSLELEAY-------AS--ELSQYKLCRKKVGGLKLEDLPGLEAL 140 (563)
Q Consensus 70 ~~~V~~v~~~p~g~i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~-------~~--~v~~~~~~~~~~~~i~~~d~~~~~~l 140 (563)
...+.+.-...++.++.++.++.|..+|..+++..-....... .. ......+.+..++.+..+|..+++.+
T Consensus 132 ~~~~~~~p~~~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~g~l~~~d~~tG~~~ 211 (376)
T 3q7m_A 132 AGEALSRPVVSDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTAFGAAVVGGDNGRVSAVLMEQGQMI 211 (376)
T ss_dssp SSCCCSCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEETTEEEECCTTTEEEEEETTTCCEE
T ss_pred CCceEcCCEEECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEECCEEEEEcCCCEEEEEECCCCcEE
Confidence 3322221122356688899999999999998874432222110 00 01233444555677887887655443
Q ss_pred eec--cc-------------------CCCeEEEEecCCCeEEEEEecccc--eEEEe-CcEeeCCCCCCCceeecCcccC
Q 008510 141 QIP--GT-------------------NAGQTKVVREGDNGVAYSWDMKEQ--KWDKL-GEVVDGPDDGMNRPILDGIQYD 196 (563)
Q Consensus 141 ~~~--g~-------------------~dg~~~l~~~~~~~~~~~wd~~~~--~w~~~-g~v~~~~~~~~~~~~~~g~~~d 196 (563)
-.. .. .++. ..+... +..++.+|..++ .|... +....... ....+|.+...+
T Consensus 212 w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-v~~~~~-~g~l~~~d~~tG~~~w~~~~~~~~~~~~--~~~~l~~~~~~g 287 (376)
T 3q7m_A 212 WQQRISQATGSTEIDRLSDVDTTPVVVNGV-VFALAY-NGNLTALDLRSGQIMWKRELGSVNDFIV--DGNRIYLVDQND 287 (376)
T ss_dssp EEEECCC-----------CCCCCCEEETTE-EEEECT-TSCEEEEETTTCCEEEEECCCCEEEEEE--ETTEEEEEETTC
T ss_pred EEEecccCCCCcccccccccCCCcEEECCE-EEEEec-CcEEEEEECCCCcEEeeccCCCCCCceE--ECCEEEEEcCCC
Confidence 211 10 1122 222222 234456666554 35432 11111000 133455555556
Q ss_pred cEEEEEcCCCCeeeeec
Q 008510 197 YVFDVDIGDGEPTRKLP 213 (563)
Q Consensus 197 ~v~~vd~~dg~~~~~~~ 213 (563)
.++.++..+|+...+.+
T Consensus 288 ~l~~~d~~tG~~~w~~~ 304 (376)
T 3q7m_A 288 RVMALTIDGGVTLWTQS 304 (376)
T ss_dssp CEEEEETTTCCEEEEEC
T ss_pred eEEEEECCCCcEEEeec
Confidence 78888887777655443
No 210
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=97.53 E-value=0.00085 Score=74.97 Aligned_cols=100 Identities=13% Similarity=0.083 Sum_probs=63.7
Q ss_pred CCCEEEEEECCCc---EEEEcC--C---CceeEEE-------ecCCCcEEEEEEcCCC-eEEEEeCC-----CcEEEEc-
Q 008510 2 PGVGIISASHDCT---IRLWAL--T---GQVLMEM-------VGHTAIVYSIDSHASG-LIVSGSED-----RFAKIWK- 59 (563)
Q Consensus 2 ~g~~l~s~s~Dgt---IrlWd~--~---g~~i~~l-------~gH~~~V~~v~~~p~g-~l~s~s~D-----~tvriWd- 59 (563)
+|++++...+++. -.+|.. . +.....+ .+|...+.+++|+||| .++.++.+ .+|++||
T Consensus 117 dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl 196 (741)
T 1yr2_A 117 RGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGV 196 (741)
T ss_dssp ETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEET
T ss_pred ECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEEC
Confidence 4677776666554 566765 3 4333332 3444568899999999 66655433 3599999
Q ss_pred -CCceeEEEecCCcEEEEEEccCCc-EEEEeCCCc--------------EEEEEcCCCc
Q 008510 60 -DGVCVQSIEHPGCVWDAKFLENGD-IVTACSDGV--------------TRIWTVHSDK 102 (563)
Q Consensus 60 -~~~~~~~l~h~~~V~~v~~~p~g~-i~sgs~Dg~--------------Irvwd~~~~~ 102 (563)
+++.+....+...+..++|+|| + |+.++.|+. |++|++.++.
T Consensus 197 ~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~ 254 (741)
T 1yr2_A 197 ADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQ 254 (741)
T ss_dssp TTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCG
T ss_pred CCCCCCCccCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCc
Confidence 6665443212223468899999 8 877776654 8999997765
No 211
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=97.51 E-value=0.035 Score=53.23 Aligned_cols=98 Identities=17% Similarity=0.156 Sum_probs=71.0
Q ss_pred CCCEEEEEECCCcEEEEcCCCceeEEEe--cCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc-CCceeEEEe---cCCcEE
Q 008510 2 PGVGIISASHDCTIRLWALTGQVLMEMV--GHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-DGVCVQSIE---HPGCVW 74 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~~g~~i~~l~--gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd-~~~~~~~l~---h~~~V~ 74 (563)
+|+.+++...++.|.+||..++. ..+. .+...+.++++.++| .+++...++.|..|+ .++ ...+. ....+.
T Consensus 25 ~g~l~v~~~~~~~v~~~d~~~~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~-~~~~~~~~~~~~~~ 102 (299)
T 2z2n_A 25 KGKVWITQHKANMISCINLDGKI-TEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKKGI-IKEYTLPNPDSAPY 102 (299)
T ss_dssp TSCEEEEETTTTEEEEECTTCCE-EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTSC-EEEEECSSTTCCEE
T ss_pred CCCEEEEecCCCcEEEEcCCCCe-EEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCCCc-EEEEeCCCcCCCce
Confidence 46666666567899999987443 3332 355789999999999 666666688899999 644 34444 334799
Q ss_pred EEEEccCCcE-EEEeCCCcEEEEEcCCCc
Q 008510 75 DAKFLENGDI-VTACSDGVTRIWTVHSDK 102 (563)
Q Consensus 75 ~v~~~p~g~i-~sgs~Dg~Irvwd~~~~~ 102 (563)
++++.++|++ ++...++.|.+||. +++
T Consensus 103 ~i~~~~~g~l~v~~~~~~~i~~~d~-~g~ 130 (299)
T 2z2n_A 103 GITEGPNGDIWFTEMNGNRIGRITD-DGK 130 (299)
T ss_dssp EEEECTTSCEEEEETTTTEEEEECT-TCC
T ss_pred eeEECCCCCEEEEecCCceEEEECC-CCC
Confidence 9999999995 45556789999998 444
No 212
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=97.47 E-value=0.0042 Score=68.86 Aligned_cols=100 Identities=10% Similarity=0.032 Sum_probs=69.9
Q ss_pred CCCEEEEEECCCc----------------EEEEcC-CCc----eeEEEecCCCcEEEEEEcCCC-eEEEEeC-----CCc
Q 008510 2 PGVGIISASHDCT----------------IRLWAL-TGQ----VLMEMVGHTAIVYSIDSHASG-LIVSGSE-----DRF 54 (563)
Q Consensus 2 ~g~~l~s~s~Dgt----------------IrlWd~-~g~----~i~~l~gH~~~V~~v~~~p~g-~l~s~s~-----D~t 54 (563)
||+.|+.++.|+. |++|++ +++ ++.+...|...+.++.|+||| .++.++. +..
T Consensus 181 Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~ 260 (710)
T 2xdw_A 181 DGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNR 260 (710)
T ss_dssp TSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCE
T ss_pred CCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccE
Confidence 6789999998877 999999 554 222223366778999999999 6665543 567
Q ss_pred EEEEc--C------Cc-eeEEEe-cCCcEEEEEEccCCc-EEEEeCC----CcEEEEEcCCCc
Q 008510 55 AKIWK--D------GV-CVQSIE-HPGCVWDAKFLENGD-IVTACSD----GVTRIWTVHSDK 102 (563)
Q Consensus 55 vriWd--~------~~-~~~~l~-h~~~V~~v~~~p~g~-i~sgs~D----g~Irvwd~~~~~ 102 (563)
|++|| + +. ....+. +...+.. .|+|+|+ ++..+.+ +.|.+||+.++.
T Consensus 261 l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~ 322 (710)
T 2xdw_A 261 LWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPE 322 (710)
T ss_dssp EEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCC
T ss_pred EEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCC
Confidence 99999 3 43 455665 5555554 4888887 6555543 369999998763
No 213
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=97.42 E-value=0.0053 Score=59.86 Aligned_cols=89 Identities=12% Similarity=0.126 Sum_probs=60.4
Q ss_pred CcEEEEcCCCceeEEEecCCCcEEEEEEc----CCC-e-EEEEeCCCcEEEEc-C--Cce-----eEEEe-cC-CcEEEE
Q 008510 13 CTIRLWALTGQVLMEMVGHTAIVYSIDSH----ASG-L-IVSGSEDRFAKIWK-D--GVC-----VQSIE-HP-GCVWDA 76 (563)
Q Consensus 13 gtIrlWd~~g~~i~~l~gH~~~V~~v~~~----p~g-~-l~s~s~D~tvriWd-~--~~~-----~~~l~-h~-~~V~~v 76 (563)
+.|..|+.+++... +..+......++++ |+| . +++...++.|.+|+ . ++. ...+. +. .....+
T Consensus 153 ~~l~~~~~~g~~~~-~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i 231 (314)
T 1pjx_A 153 GSIYCFTTDGQMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGM 231 (314)
T ss_dssp EEEEEECTTSCEEE-EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEE
T ss_pred CeEEEECCCCCEEE-eccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCce
Confidence 45666776665443 33344567889999 998 4 45556788999999 3 331 12222 22 568899
Q ss_pred EEccCCcE-EEEeCCCcEEEEEcCCCc
Q 008510 77 KFLENGDI-VTACSDGVTRIWTVHSDK 102 (563)
Q Consensus 77 ~~~p~g~i-~sgs~Dg~Irvwd~~~~~ 102 (563)
++.++|++ ++...++.|.+||.++++
T Consensus 232 ~~d~~G~l~v~~~~~~~i~~~d~~~g~ 258 (314)
T 1pjx_A 232 DFDEDNNLLVANWGSSHIEVFGPDGGQ 258 (314)
T ss_dssp EEBTTCCEEEEEETTTEEEEECTTCBS
T ss_pred EECCCCCEEEEEcCCCEEEEEcCCCCc
Confidence 99999994 555578899999988665
No 214
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=97.39 E-value=0.064 Score=54.35 Aligned_cols=99 Identities=10% Similarity=0.054 Sum_probs=71.5
Q ss_pred CCCEEEEEE----------CCCcEEEEcC-CCceeEEEecC-------CCcEEEEEEcCCC-eEEEEeC--CCcEEEEc-
Q 008510 2 PGVGIISAS----------HDCTIRLWAL-TGQVLMEMVGH-------TAIVYSIDSHASG-LIVSGSE--DRFAKIWK- 59 (563)
Q Consensus 2 ~g~~l~s~s----------~DgtIrlWd~-~g~~i~~l~gH-------~~~V~~v~~~p~g-~l~s~s~--D~tvriWd- 59 (563)
||++++.+. .+++|.+||. +++.+.++.-. ...-..+.++|+| .++.++. +.+|.++|
T Consensus 76 Dg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD~ 155 (373)
T 2mad_H 76 SGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQ 155 (373)
T ss_pred CCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEEC
Confidence 577777775 3688999999 77777766421 1234689999999 6666653 47899999
Q ss_pred CCceeEE-EecCCcEEEEEEccCCc--EEEEeCCCcEEEEEcCCCcee
Q 008510 60 DGVCVQS-IEHPGCVWDAKFLENGD--IVTACSDGVTRIWTVHSDKVA 104 (563)
Q Consensus 60 ~~~~~~~-l~h~~~V~~v~~~p~g~--i~sgs~Dg~Irvwd~~~~~~~ 104 (563)
+++.+.+ +..+.. +.+.|++. +++.+.||.+.+||. +++..
T Consensus 156 t~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~ 199 (373)
T 2mad_H 156 GGSSDDQLLSSPTC---YHIHPGAPSTFYLLCAQGGLAKTDH-AGGAA 199 (373)
T ss_pred CCCEEeEEcCCCce---EEEEeCCCceEEEEcCCCCEEEEEC-CCcEE
Confidence 6677777 655443 45667664 778889999999999 77644
No 215
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.32 E-value=0.043 Score=52.36 Aligned_cols=105 Identities=15% Similarity=0.176 Sum_probs=73.8
Q ss_pred CCCEEEEEECCC--cEEEEcC-CCceeEEEecCCC-cEEEEEEcCCCeEEEEeCCCcEEEEc--CCceeEEEecCCcEEE
Q 008510 2 PGVGIISASHDC--TIRLWAL-TGQVLMEMVGHTA-IVYSIDSHASGLIVSGSEDRFAKIWK--DGVCVQSIEHPGCVWD 75 (563)
Q Consensus 2 ~g~~l~s~s~Dg--tIrlWd~-~g~~i~~l~gH~~-~V~~v~~~p~g~l~s~s~D~tvriWd--~~~~~~~l~h~~~V~~ 75 (563)
++..+.|+|.+| .|+++|+ +|+.++++.-... +--.+++..+...+..-.++.+.++| +.+.+.++..+..=|.
T Consensus 52 ~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~eG~g 131 (262)
T 3nol_A 52 NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGEGWG 131 (262)
T ss_dssp TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEECSSCCCC
T ss_pred CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEECCCCceE
Confidence 456778888877 8999999 8999888765433 22345554332455556688999999 8899999986554455
Q ss_pred EEEccCCc-EEEEeCCCcEEEEEcCCCceeceee
Q 008510 76 AKFLENGD-IVTACSDGVTRIWTVHSDKVADSLE 108 (563)
Q Consensus 76 v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~ 108 (563)
++ ++|. ++.+..++.|.++|..+.+......
T Consensus 132 lt--~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~ 163 (262)
T 3nol_A 132 LT--HNDQYLIMSDGTPVLRFLDPESLTPVRTIT 163 (262)
T ss_dssp EE--ECSSCEEECCSSSEEEEECTTTCSEEEEEE
T ss_pred Ee--cCCCEEEEECCCCeEEEEcCCCCeEEEEEE
Confidence 55 4666 6555557889999999887554433
No 216
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.31 E-value=0.061 Score=50.75 Aligned_cols=105 Identities=15% Similarity=0.128 Sum_probs=74.5
Q ss_pred CCEEEEEECCC--cEEEEcC-CCceeEEEecCCC-cEEEEEEcCCCeEEEEeCCCcEEEEc--CCceeEEEecCCcEEEE
Q 008510 3 GVGIISASHDC--TIRLWAL-TGQVLMEMVGHTA-IVYSIDSHASGLIVSGSEDRFAKIWK--DGVCVQSIEHPGCVWDA 76 (563)
Q Consensus 3 g~~l~s~s~Dg--tIrlWd~-~g~~i~~l~gH~~-~V~~v~~~p~g~l~s~s~D~tvriWd--~~~~~~~l~h~~~V~~v 76 (563)
+..+.|++.+| .|+.+|+ +|+.++++.-... +--.+++..+...+..-.++.+.++| +.+.+.++..+..=|.+
T Consensus 31 ~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~Gwgl 110 (243)
T 3mbr_X 31 GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRARFRYPGEGWAL 110 (243)
T ss_dssp TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEECSSCCCEE
T ss_pred CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEEEEeCCCCceEE
Confidence 45677777764 8999999 8999888764433 22345555333555567789999999 88999999966555666
Q ss_pred EEccCCc-EEEEeCCCcEEEEEcCCCceeceeee
Q 008510 77 KFLENGD-IVTACSDGVTRIWTVHSDKVADSLEL 109 (563)
Q Consensus 77 ~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~ 109 (563)
+ +++. +..+..++.|.++|..+.+......+
T Consensus 111 t--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V 142 (243)
T 3mbr_X 111 T--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKV 142 (243)
T ss_dssp E--ECSSCEEEECSSSEEEEECTTTCCEEEEEEC
T ss_pred e--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEE
Confidence 6 4555 66656688999999999875544443
No 217
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=97.25 E-value=0.033 Score=54.23 Aligned_cols=99 Identities=3% Similarity=-0.023 Sum_probs=61.7
Q ss_pred CCCEEEEEECCCcEEEEcC-CCceeEEEec----CCCcEEEEEEcCCC-eEEEEeC---------CCcEEEEc---CCce
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVLMEMVG----HTAIVYSIDSHASG-LIVSGSE---------DRFAKIWK---DGVC 63 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~g----H~~~V~~v~~~p~g-~l~s~s~---------D~tvriWd---~~~~ 63 (563)
+|++ +.+. +..|.+||. +++....... ....+++++++|+| .+++... ...-+||. .++.
T Consensus 64 dG~l-~v~~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~ 141 (297)
T 3g4e_A 64 SGGY-VATI-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHV 141 (297)
T ss_dssp TSSE-EEEE-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCE
T ss_pred CCCE-EEEE-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCE
Confidence 4564 4444 567999998 5554322221 12457899999999 4444322 23345555 4554
Q ss_pred eEEEecCCcEEEEEEccCCc-E-EEEeCCCcEEEEEcC--CCc
Q 008510 64 VQSIEHPGCVWDAKFLENGD-I-VTACSDGVTRIWTVH--SDK 102 (563)
Q Consensus 64 ~~~l~h~~~V~~v~~~p~g~-i-~sgs~Dg~Irvwd~~--~~~ 102 (563)
.....+......++|+|+|+ + ++.+.++.|.+||++ ++.
T Consensus 142 ~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~ 184 (297)
T 3g4e_A 142 KKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQ 184 (297)
T ss_dssp EEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCC
T ss_pred EEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCc
Confidence 44334445678999999998 5 566668899999974 454
No 218
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=97.20 E-value=0.075 Score=50.84 Aligned_cols=99 Identities=12% Similarity=0.026 Sum_probs=71.5
Q ss_pred CCCEEEEEECCCcEEEEcCCCceeEEEe--cCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc-CCceeEEEe--cCCcEEE
Q 008510 2 PGVGIISASHDCTIRLWALTGQVLMEMV--GHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-DGVCVQSIE--HPGCVWD 75 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~~g~~i~~l~--gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd-~~~~~~~l~--h~~~V~~ 75 (563)
+|+.+++...++.|..|+.+++. ..+. .+...+.++++.++| .+++...++.|.+|+ +++...... +...+.+
T Consensus 67 ~g~l~v~~~~~~~i~~~~~~g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~ 145 (299)
T 2z2n_A 67 DGEVWFTENAANKIGRITKKGII-KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITDDGKIREYELPNKGSYPSF 145 (299)
T ss_dssp TSCEEEEETTTTEEEEECTTSCE-EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEE
T ss_pred CCCEEEeCCCCCeEEEECCCCcE-EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECCCCCEEEecCCCCCCCCce
Confidence 46666666668889999987553 3333 345678999999998 666666788999999 665443222 3347999
Q ss_pred EEEccCCcEE-EEeCCCcEEEEEcCCCc
Q 008510 76 AKFLENGDIV-TACSDGVTRIWTVHSDK 102 (563)
Q Consensus 76 v~~~p~g~i~-sgs~Dg~Irvwd~~~~~ 102 (563)
+++.++|++. +...++.|..||. +++
T Consensus 146 i~~~~~g~l~v~~~~~~~i~~~~~-~g~ 172 (299)
T 2z2n_A 146 ITLGSDNALWFTENQNNAIGRITE-SGD 172 (299)
T ss_dssp EEECTTSCEEEEETTTTEEEEECT-TCC
T ss_pred EEEcCCCCEEEEeCCCCEEEEEcC-CCc
Confidence 9999999954 4445689999998 555
No 219
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=97.20 E-value=0.034 Score=53.98 Aligned_cols=98 Identities=9% Similarity=-0.017 Sum_probs=63.2
Q ss_pred EEEEEECCCcEEEEcCCCceeEE-Eec----CCCcEEEEEEcCCC-eEEEEeCC---------------CcEEEEc-CCc
Q 008510 5 GIISASHDCTIRLWALTGQVLME-MVG----HTAIVYSIDSHASG-LIVSGSED---------------RFAKIWK-DGV 62 (563)
Q Consensus 5 ~l~s~s~DgtIrlWd~~g~~i~~-l~g----H~~~V~~v~~~p~g-~l~s~s~D---------------~tvriWd-~~~ 62 (563)
.+..++.+..|.+||.+|+.... ... +...+++++++++| .+++...+ +.|..|+ .++
T Consensus 84 ~l~v~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~ 163 (314)
T 1pjx_A 84 QLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQ 163 (314)
T ss_dssp EEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSC
T ss_pred cEEEEECCCCEEEEeCCCCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCCCC
Confidence 34444445578899987554322 211 12458899999999 56655544 4566677 655
Q ss_pred eeEEEecCCcEEEEEEc----cCCc-E-EEEeCCCcEEEEEcC-CCc
Q 008510 63 CVQSIEHPGCVWDAKFL----ENGD-I-VTACSDGVTRIWTVH-SDK 102 (563)
Q Consensus 63 ~~~~l~h~~~V~~v~~~----p~g~-i-~sgs~Dg~Irvwd~~-~~~ 102 (563)
......+......++++ |+|+ + ++...++.|++||.+ +++
T Consensus 164 ~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~ 210 (314)
T 1pjx_A 164 MIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAK 210 (314)
T ss_dssp EEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTE
T ss_pred EEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCc
Confidence 44434444567889999 9996 5 444567899999986 443
No 220
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=97.16 E-value=0.012 Score=60.70 Aligned_cols=123 Identities=11% Similarity=0.107 Sum_probs=83.3
Q ss_pred CcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEe----------CCCcEEEEc--CCceeEEEecC--------
Q 008510 13 CTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGS----------EDRFAKIWK--DGVCVQSIEHP-------- 70 (563)
Q Consensus 13 gtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s----------~D~tvriWd--~~~~~~~l~h~-------- 70 (563)
++|.+.|. +++.+.++.--..+ .++++||| .+..+. .+++|.++| +.+.+.++..+
T Consensus 99 ~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g 176 (426)
T 3c75_H 99 TQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVG 176 (426)
T ss_dssp EEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBS
T ss_pred CeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccC
Confidence 69999999 88999888754455 89999999 444443 467899999 78888887633
Q ss_pred CcEEEEEEccCCc-EEEEeC--CCcEEEEEcCCCceeceeeecccc---cccceeEEeeccCCceEEEeCCCC
Q 008510 71 GCVWDAKFLENGD-IVTACS--DGVTRIWTVHSDKVADSLELEAYA---SELSQYKLCRKKVGGLKLEDLPGL 137 (563)
Q Consensus 71 ~~V~~v~~~p~g~-i~sgs~--Dg~Irvwd~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~i~~~d~~~~ 137 (563)
..-..++++|||+ ++.+.. ++.|.+.|..+++......+.... ..-....+....+|.+.+.+....
T Consensus 177 ~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~ 249 (426)
T 3c75_H 177 TYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADG 249 (426)
T ss_dssp CCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTT
T ss_pred CCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCC
Confidence 2456789999998 665553 688999999999866554443210 000122233445566666665433
No 221
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=97.12 E-value=0.013 Score=59.63 Aligned_cols=99 Identities=12% Similarity=0.139 Sum_probs=71.5
Q ss_pred CCCEEEEEE----------CCCcEEEEcC-CCceeEEEecCC-------CcEEEEEEcCCC-eEEEEeC--CCcEEEEc-
Q 008510 2 PGVGIISAS----------HDCTIRLWAL-TGQVLMEMVGHT-------AIVYSIDSHASG-LIVSGSE--DRFAKIWK- 59 (563)
Q Consensus 2 ~g~~l~s~s----------~DgtIrlWd~-~g~~i~~l~gH~-------~~V~~v~~~p~g-~l~s~s~--D~tvriWd- 59 (563)
||++++.++ .+++|.+||. +++.+.++.-.. ..-..+.++||| .+..+.. +++|.++|
T Consensus 88 DG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~ 167 (386)
T 3sjl_D 88 DGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDL 167 (386)
T ss_dssp TSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEET
T ss_pred CCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEEC
Confidence 566666654 4678999999 888888875221 234578999999 6555553 68999999
Q ss_pred -CCceeEEEecCCcEEEEEEccCC-c-EEEEeCCCcEEEEEcCC-Cce
Q 008510 60 -DGVCVQSIEHPGCVWDAKFLENG-D-IVTACSDGVTRIWTVHS-DKV 103 (563)
Q Consensus 60 -~~~~~~~l~h~~~V~~v~~~p~g-~-i~sgs~Dg~Irvwd~~~-~~~ 103 (563)
+++.+.++.-++. + ...|.| + +++.|.||.+-+.++.+ ++.
T Consensus 168 ~t~~vv~tI~v~g~-~--~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v 212 (386)
T 3sjl_D 168 EGKAFKRMLDVPDC-Y--HIFPTAPDTFFMHCRDGSLAKVAFGTEGTP 212 (386)
T ss_dssp TTTEEEEEEECCSE-E--EEEEEETTEEEEEETTSCEEEEECCSSSCC
T ss_pred CCCcEEEEEECCCc-c--eeecCCCceeEEECCCCCEEEEECCCCCeE
Confidence 8888888875542 2 233544 3 78889999999999976 553
No 222
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=97.08 E-value=0.036 Score=53.91 Aligned_cols=84 Identities=12% Similarity=0.005 Sum_probs=57.1
Q ss_pred CCEEEEEECCCcEEEEcCCCceeEEEecCCCcEEEEEEcCCCeEEEEeCCCcEEEEc-CCceeEEEe-c----C-CcEEE
Q 008510 3 GVGIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWK-DGVCVQSIE-H----P-GCVWD 75 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~~g~~i~~l~gH~~~V~~v~~~p~g~l~s~s~D~tvriWd-~~~~~~~l~-h----~-~~V~~ 75 (563)
+..+++...++.|..||..+.....+ .+...+.+++++++|.++.+. ++.|.+|| ....+..+. . + ..+..
T Consensus 25 ~~l~~~d~~~~~i~~~d~~~~~~~~~-~~~~~~~~i~~~~dG~l~v~~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~d 102 (297)
T 3g4e_A 25 NSLLFVDIPAKKVCRWDSFTKQVQRV-TMDAPVSSVALRQSGGYVATI-GTKFCALNWKEQSAVVLATVDNDKKNNRFND 102 (297)
T ss_dssp TEEEEEETTTTEEEEEETTTCCEEEE-ECSSCEEEEEEBTTSSEEEEE-TTEEEEEETTTTEEEEEEECCTTCSSEEEEE
T ss_pred CEEEEEECCCCEEEEEECCCCcEEEE-eCCCceEEEEECCCCCEEEEE-CCeEEEEECCCCcEEEEEecCCCCCCCCCCC
Confidence 45677777789999999943333343 356789999999999444444 56799999 433334443 2 1 25889
Q ss_pred EEEccCCcEEEEe
Q 008510 76 AKFLENGDIVTAC 88 (563)
Q Consensus 76 v~~~p~g~i~sgs 88 (563)
+++.|+|++..++
T Consensus 103 i~~d~dG~l~~~~ 115 (297)
T 3g4e_A 103 GKVDPAGRYFAGT 115 (297)
T ss_dssp EEECTTSCEEEEE
T ss_pred EEECCCCCEEEec
Confidence 9999999954443
No 223
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=97.07 E-value=0.014 Score=64.46 Aligned_cols=138 Identities=14% Similarity=0.128 Sum_probs=87.8
Q ss_pred CCEEEEEECCCcEEEEcC-CCceeEEEecC--CCcEEEEEEcC---CCeEEEEe------CCCcEEEEc--CCceeEEEe
Q 008510 3 GVGIISASHDCTIRLWAL-TGQVLMEMVGH--TAIVYSIDSHA---SGLIVSGS------EDRFAKIWK--DGVCVQSIE 68 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH--~~~V~~v~~~p---~g~l~s~s------~D~tvriWd--~~~~~~~l~ 68 (563)
+..++.++.|+.|..+|. +|+.+.++... ....+.+..+| ++.++.++ .|+.|+.|| +|+.+..+.
T Consensus 121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 200 (689)
T 1yiq_A 121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFY 200 (689)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred CCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEec
Confidence 567888999999999999 89998877642 22112222223 55444332 378999999 899887775
Q ss_pred c-C---C---------------------------cEE-EEEEccCCc-EEEEeCCCc-------------------EEEE
Q 008510 69 H-P---G---------------------------CVW-DAKFLENGD-IVTACSDGV-------------------TRIW 96 (563)
Q Consensus 69 h-~---~---------------------------~V~-~v~~~p~g~-i~sgs~Dg~-------------------Irvw 96 (563)
. + . .+| .+++.|++. ++.++.++. |..|
T Consensus 201 ~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~Al 280 (689)
T 1yiq_A 201 TVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAV 280 (689)
T ss_dssp SSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEE
T ss_pred ccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEE
Confidence 1 1 0 122 577888666 777777653 9999
Q ss_pred EcCCCceeceeeecccc-------cc--c---------ceeEEeeccCCceEEEeCCCCcee
Q 008510 97 TVHSDKVADSLELEAYA-------SE--L---------SQYKLCRKKVGGLKLEDLPGLEAL 140 (563)
Q Consensus 97 d~~~~~~~~~~~~~~~~-------~~--v---------~~~~~~~~~~~~i~~~d~~~~~~l 140 (563)
|.++++..=......+. .. + ....+....+|.+.++|..+++.+
T Consensus 281 D~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l 342 (689)
T 1yiq_A 281 NADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELL 342 (689)
T ss_dssp ETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred EccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEe
Confidence 99999854222221110 00 0 113445667788999998777665
No 224
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=96.99 E-value=0.26 Score=46.89 Aligned_cols=99 Identities=14% Similarity=0.059 Sum_probs=71.2
Q ss_pred CCCEEEEEECCCcEEEEcCCCceeE-EEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc-CCceeEEEe---cCCcEEE
Q 008510 2 PGVGIISASHDCTIRLWALTGQVLM-EMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-DGVCVQSIE---HPGCVWD 75 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~~g~~i~-~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd-~~~~~~~l~---h~~~V~~ 75 (563)
+|+.+++...++.|.+|+..++... .+..+...+.++++.++| .+++...++.|..|| .++. ..+. ....+.+
T Consensus 30 ~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~g~~-~~~~~~~~~~~~~~ 108 (300)
T 2qc5_A 30 DGKVWFTQHKANKISSLDQSGRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKKGGF-TEYPLPQPDSGPYG 108 (300)
T ss_dssp TSCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTSCE-EEEECSSTTCCEEE
T ss_pred CCCEEEEcCCCCeEEEECCCCceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCCCCe-EEecCCCCCCCCcc
Confidence 4666676667899999998755433 222344678999999998 666666678899999 7443 4444 2357999
Q ss_pred EEEccCCcE-EEEeCCCcEEEEEcCCCc
Q 008510 76 AKFLENGDI-VTACSDGVTRIWTVHSDK 102 (563)
Q Consensus 76 v~~~p~g~i-~sgs~Dg~Irvwd~~~~~ 102 (563)
+++.++|++ ++...++.|..||.. ++
T Consensus 109 i~~~~~g~l~v~~~~~~~i~~~~~~-g~ 135 (300)
T 2qc5_A 109 ITEGLNGDIWFTQLNGDRIGKLTAD-GT 135 (300)
T ss_dssp EEECSTTCEEEEETTTTEEEEECTT-SC
T ss_pred ceECCCCCEEEEccCCCeEEEECCC-CC
Confidence 999999995 444457899999987 54
No 225
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=96.95 E-value=0.026 Score=62.10 Aligned_cols=138 Identities=12% Similarity=0.047 Sum_probs=86.9
Q ss_pred CCEEEEEECCCcEEEEcC-CCceeEEEecC-C----CcEEEEEEcCCCeEEEEeC------CCcEEEEc--CCceeEEEe
Q 008510 3 GVGIISASHDCTIRLWAL-TGQVLMEMVGH-T----AIVYSIDSHASGLIVSGSE------DRFAKIWK--DGVCVQSIE 68 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH-~----~~V~~v~~~p~g~l~s~s~------D~tvriWd--~~~~~~~l~ 68 (563)
+..++.++.|+.|..+|. +|+.+.++..+ . ..+.+--...++.++.++. |+.|+.|| +|+.+..+.
T Consensus 128 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~ 207 (677)
T 1kb0_A 128 KGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWF 207 (677)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEec
Confidence 567888899999999999 89999888765 2 1222111111454444432 79999999 899888776
Q ss_pred c-CCc-------------------------------E-EEEEEccCCc-EEEEeCCC-------------------cEEE
Q 008510 69 H-PGC-------------------------------V-WDAKFLENGD-IVTACSDG-------------------VTRI 95 (563)
Q Consensus 69 h-~~~-------------------------------V-~~v~~~p~g~-i~sgs~Dg-------------------~Irv 95 (563)
. +.. + ..+++.|++. +..++.++ .|..
T Consensus 208 ~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~A 287 (677)
T 1kb0_A 208 SVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVA 287 (677)
T ss_dssp SSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEE
T ss_pred cCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEE
Confidence 2 111 1 2467888766 66666553 5999
Q ss_pred EEcCCCceeceeeecccc-------cc--c---------ceeEEeeccCCceEEEeCCCCcee
Q 008510 96 WTVHSDKVADSLELEAYA-------SE--L---------SQYKLCRKKVGGLKLEDLPGLEAL 140 (563)
Q Consensus 96 wd~~~~~~~~~~~~~~~~-------~~--v---------~~~~~~~~~~~~i~~~d~~~~~~l 140 (563)
+|.++++..=......+. .. + ....+....+|.+.++|..+++.+
T Consensus 288 lD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l 350 (677)
T 1kb0_A 288 LDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFI 350 (677)
T ss_dssp ECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred EECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEe
Confidence 999998854322221110 00 0 034455667788888888766554
No 226
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=96.94 E-value=0.015 Score=56.85 Aligned_cols=83 Identities=16% Similarity=0.063 Sum_probs=59.4
Q ss_pred CC-EEEEEECCCcEEEEcCCCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc-CCceeEEEec-----CCcEE
Q 008510 3 GV-GIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-DGVCVQSIEH-----PGCVW 74 (563)
Q Consensus 3 g~-~l~s~s~DgtIrlWd~~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd-~~~~~~~l~h-----~~~V~ 74 (563)
|+ .+++...++.|..|+.+|+ ...+..+...+.+++++++| .+++...++.|.+|+ +++......+ ...+.
T Consensus 56 g~~l~~~d~~~~~i~~~~~~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~ 134 (305)
T 3dr2_A 56 QRTLVWSDLVGRRVLGWREDGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDADGQAHLLVGRYAGKRLNSPN 134 (305)
T ss_dssp GTEEEEEETTTTEEEEEETTSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEECEETTEECSCCC
T ss_pred CCEEEEEECCCCEEEEEeCCCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCCCCEEEEEeccCCCccCCCC
Confidence 45 5777778899999998665 45666677889999999999 454444557899999 7553322221 12467
Q ss_pred EEEEccCCcEEE
Q 008510 75 DAKFLENGDIVT 86 (563)
Q Consensus 75 ~v~~~p~g~i~s 86 (563)
++++.|+|++..
T Consensus 135 ~i~~d~dG~l~~ 146 (305)
T 3dr2_A 135 DLIVARDGAIWF 146 (305)
T ss_dssp CEEECTTSCEEE
T ss_pred CEEECCCCCEEE
Confidence 899999999544
No 227
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=96.94 E-value=0.053 Score=52.10 Aligned_cols=104 Identities=13% Similarity=0.065 Sum_probs=70.8
Q ss_pred CCEEEEEEC--CCcEEEEcC-CCceeEEEec-CCCcEEEEEEcCCCeEEEEeCCCcEEEEc--CCceeEEEecC-CcEEE
Q 008510 3 GVGIISASH--DCTIRLWAL-TGQVLMEMVG-HTAIVYSIDSHASGLIVSGSEDRFAKIWK--DGVCVQSIEHP-GCVWD 75 (563)
Q Consensus 3 g~~l~s~s~--DgtIrlWd~-~g~~i~~l~g-H~~~V~~v~~~p~g~l~s~s~D~tvriWd--~~~~~~~l~h~-~~V~~ 75 (563)
|..+++.+. +++|++.|+ +|+.++++.- ...+...+++..+...++.-.++.+.++| +.+.+.++..+ ..-|.
T Consensus 32 g~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~~g~g 111 (266)
T 2iwa_A 32 DTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMKDGWG 111 (266)
T ss_dssp TEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEEEEEETTTTEEEEEEECCSSSCCE
T ss_pred CeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEEEEEECCCCcEEEEEECCCCCeEE
Confidence 444555543 579999999 8999888752 22344456665332555666778999999 78888888744 33344
Q ss_pred EEEccCCc-EEEEeCCCcEEEEEcCCCceeceee
Q 008510 76 AKFLENGD-IVTACSDGVTRIWTVHSDKVADSLE 108 (563)
Q Consensus 76 v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~ 108 (563)
++++|. ++++..++.|.++|..+.+......
T Consensus 112 --lt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~ 143 (266)
T 2iwa_A 112 --LATDGKILYGSDGTSILYEIDPHTFKLIKKHN 143 (266)
T ss_dssp --EEECSSSEEEECSSSEEEEECTTTCCEEEEEE
T ss_pred --EEECCCEEEEECCCCeEEEEECCCCcEEEEEE
Confidence 445776 6555568899999999877544333
No 228
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=96.91 E-value=0.011 Score=65.34 Aligned_cols=98 Identities=12% Similarity=0.021 Sum_probs=63.1
Q ss_pred CCCEEEE-----EECCCcEEEEcC-CCceeEE-EecCCCcEEEEEEcCCC-eEEEEeCCCc-------------EEEEc-
Q 008510 2 PGVGIIS-----ASHDCTIRLWAL-TGQVLME-MVGHTAIVYSIDSHASG-LIVSGSEDRF-------------AKIWK- 59 (563)
Q Consensus 2 ~g~~l~s-----~s~DgtIrlWd~-~g~~i~~-l~gH~~~V~~v~~~p~g-~l~s~s~D~t-------------vriWd- 59 (563)
||+++|- |+.+.+|++||+ +|+.+.. +.+ ....+++|+ || .|+.++.|.. |++|+
T Consensus 139 Dg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~--~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~l 215 (693)
T 3iuj_A 139 DGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKD--VKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRL 215 (693)
T ss_dssp TSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEE--EESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEET
T ss_pred CCCEEEEEEecCCCceEEEEEEECCCCCCCccccCC--ceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEEC
Confidence 5777773 334468999999 7775543 221 112567899 98 7777777743 88998
Q ss_pred -CCce--eEEEec----CCcEEEEEEccCCc-E-EEEeC---CCcEEEEEcCCCc
Q 008510 60 -DGVC--VQSIEH----PGCVWDAKFLENGD-I-VTACS---DGVTRIWTVHSDK 102 (563)
Q Consensus 60 -~~~~--~~~l~h----~~~V~~v~~~p~g~-i-~sgs~---Dg~Irvwd~~~~~ 102 (563)
++.. ...+.. +..+.++.|+|+|+ | ++.+. ++.|++||+.++.
T Consensus 216 gt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~ 270 (693)
T 3iuj_A 216 GTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQEN 270 (693)
T ss_dssp TSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTT
T ss_pred CCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCC
Confidence 3321 223332 33578999999999 4 33332 3589999987763
No 229
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=96.91 E-value=0.04 Score=53.91 Aligned_cols=84 Identities=14% Similarity=0.065 Sum_probs=41.4
Q ss_pred EEEEcCCCceeEEEecCCCcEEEEEEcCCCeEEEEeCCCcEEEEc-CCceeEEEe-cCCcEEEEEEccCCcEEEEeCCCc
Q 008510 15 IRLWALTGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWK-DGVCVQSIE-HPGCVWDAKFLENGDIVTACSDGV 92 (563)
Q Consensus 15 IrlWd~~g~~i~~l~gH~~~V~~v~~~p~g~l~s~s~D~tvriWd-~~~~~~~l~-h~~~V~~v~~~p~g~i~sgs~Dg~ 92 (563)
|..+|.+|+.+..+..+.....+..+. ++.+..++.++.+..+| .++...... +...+.++...++|.+..|+.++.
T Consensus 80 l~~~d~~g~~~~~~~~~~~~~~~~~~~-~~~l~v~t~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~g~l~vgt~~~~ 158 (330)
T 3hxj_A 80 VYAINPDGTEKWRFDTKKAIVSDFTIF-EDILYVTSMDGHLYAINTDGTEKWRFKTKKAIYATPIVSEDGTIYVGSNDNY 158 (330)
T ss_dssp EEEECCCGGGGGGSCC-----CCEEEE-TTEEEEECTTSEEEEECTTSCEEEEEECSSCCCSCCEECTTSCEEEECTTSE
T ss_pred EEEECCCCcEEEEEECCCCcccCceEE-CCEEEEEecCCEEEEEcCCCCEEEEEcCCCceeeeeEEcCCCEEEEEcCCCE
Confidence 666665554443333222222222222 55555555666666666 545544444 223445555555555555666666
Q ss_pred EEEEEcC
Q 008510 93 TRIWTVH 99 (563)
Q Consensus 93 Irvwd~~ 99 (563)
|..||..
T Consensus 159 l~~~d~~ 165 (330)
T 3hxj_A 159 LYAINPD 165 (330)
T ss_dssp EEEECTT
T ss_pred EEEECCC
Confidence 6666665
No 230
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=96.91 E-value=0.063 Score=55.13 Aligned_cols=100 Identities=7% Similarity=-0.026 Sum_probs=66.6
Q ss_pred CCCEEEEEECCC--cEEEEcC-CCceeEEE----ecCCCcEEEEEEcC-CCeEEEEeCCCcEEEEc-CCceeEEE----e
Q 008510 2 PGVGIISASHDC--TIRLWAL-TGQVLMEM----VGHTAIVYSIDSHA-SGLIVSGSEDRFAKIWK-DGVCVQSI----E 68 (563)
Q Consensus 2 ~g~~l~s~s~Dg--tIrlWd~-~g~~i~~l----~gH~~~V~~v~~~p-~g~l~s~s~D~tvriWd-~~~~~~~l----~ 68 (563)
+|+.++.+..++ .|.+|+. .+.....+ ..+...+.+++++| +|.+..+..++.|+.|| .......+ .
T Consensus 181 ~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~ 260 (409)
T 3hrp_A 181 DKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLEL 260 (409)
T ss_dssp TSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCC
T ss_pred CCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccc
Confidence 456778887766 6888887 34433444 22456778999999 56555577788999999 44334444 2
Q ss_pred --cCCcE-E-EEEEccC-Cc-EEEEeCCCcEEEEEcCCC
Q 008510 69 --HPGCV-W-DAKFLEN-GD-IVTACSDGVTRIWTVHSD 101 (563)
Q Consensus 69 --h~~~V-~-~v~~~p~-g~-i~sgs~Dg~Irvwd~~~~ 101 (563)
+...- . .++|+|+ +. .++-..++.|+.|+.+..
T Consensus 261 ~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~ 299 (409)
T 3hrp_A 261 SGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE 299 (409)
T ss_dssp CSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC
T ss_pred cCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC
Confidence 11222 3 8999994 66 466667889999997754
No 231
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=96.86 E-value=0.16 Score=50.12 Aligned_cols=95 Identities=15% Similarity=0.057 Sum_probs=59.0
Q ss_pred CCCEEEEEECCCcEEEEcC-CCceeEEEecC-----CCcEEEEEEcCCC-eEEEEeCC----CcEEEEc--CCceeEEEe
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGH-----TAIVYSIDSHASG-LIVSGSED----RFAKIWK--DGVCVQSIE 68 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH-----~~~V~~v~~~p~g-~l~s~s~D----~tvriWd--~~~~~~~l~ 68 (563)
+|+++++ +.++ |.+||. +|+.. .+... ...+++++++|+| .+++...+ +...||. +++......
T Consensus 100 dg~l~v~-~~~g-l~~~d~~~g~~~-~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~~g~~~~~~~ 176 (326)
T 2ghs_A 100 DSKQLIA-SDDG-LFLRDTATGVLT-LHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFA 176 (326)
T ss_dssp TTEEEEE-ETTE-EEEEETTTCCEE-EEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEE
T ss_pred CCeEEEE-ECCC-EEEEECCCCcEE-EEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEeCCcEEEeeC
Confidence 3555554 4444 899998 56543 33221 2468899999999 54443321 3455665 443322222
Q ss_pred cCCcEEEEEEccCCc-E-EEEeCCCcEEEEEcC
Q 008510 69 HPGCVWDAKFLENGD-I-VTACSDGVTRIWTVH 99 (563)
Q Consensus 69 h~~~V~~v~~~p~g~-i-~sgs~Dg~Irvwd~~ 99 (563)
+......++|+|+|+ + ++.+.++.|.+||.+
T Consensus 177 ~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~ 209 (326)
T 2ghs_A 177 DISIPNSICFSPDGTTGYFVDTKVNRLMRVPLD 209 (326)
T ss_dssp EESSEEEEEECTTSCEEEEEETTTCEEEEEEBC
T ss_pred CCcccCCeEEcCCCCEEEEEECCCCEEEEEEcc
Confidence 334678899999997 5 444567899999986
No 232
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=96.83 E-value=0.035 Score=54.20 Aligned_cols=99 Identities=8% Similarity=-0.028 Sum_probs=63.1
Q ss_pred CCCEEEEEECCCcEEEEcCCCceeEEEecC-----CCcEEEEEEcCCC-eEEE----EeC-------------CCcEEEE
Q 008510 2 PGVGIISASHDCTIRLWALTGQVLMEMVGH-----TAIVYSIDSHASG-LIVS----GSE-------------DRFAKIW 58 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~~g~~i~~l~gH-----~~~V~~v~~~p~g-~l~s----~s~-------------D~tvriW 58 (563)
+|+.+++...++.|.+|+.+|+.. .+..+ ...+.++++.|+| .++| |.. .+.|..|
T Consensus 96 dG~l~v~~~~~~~v~~~~~~g~~~-~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~ 174 (305)
T 3dr2_A 96 QQRLVHCEHGRRAITRSDADGQAH-LLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRL 174 (305)
T ss_dssp TSCEEEEETTTTEEEEECTTSCEE-EEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEE
T ss_pred CCCEEEEECCCCEEEEECCCCCEE-EEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEE
Confidence 466555444557899999876643 23221 1346789999999 6665 322 2456666
Q ss_pred c--CCceeEEEecCCcEEEEEEccCCc-EEEEeCC------CcEEEEEcCCCc
Q 008510 59 K--DGVCVQSIEHPGCVWDAKFLENGD-IVTACSD------GVTRIWTVHSDK 102 (563)
Q Consensus 59 d--~~~~~~~l~h~~~V~~v~~~p~g~-i~sgs~D------g~Irvwd~~~~~ 102 (563)
+ +++..... .......++|+|+|+ ++.+..+ +.|++|++..+.
T Consensus 175 d~~~g~~~~~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~ 226 (305)
T 3dr2_A 175 PPDGSPLQRMA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA 226 (305)
T ss_dssp CSSSCCCEEEE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE
T ss_pred cCCCCcEEEEe-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC
Confidence 6 34443333 334677899999998 7666554 789999987654
No 233
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=96.81 E-value=0.038 Score=54.66 Aligned_cols=83 Identities=11% Similarity=0.038 Sum_probs=56.1
Q ss_pred CCEEEEEECCCcEEEEcCCCceeEEEecCCCcEEEEEEcCCCeEEEEeCCCcEEEEc--CCceeEEEe-c----C-CcEE
Q 008510 3 GVGIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWK--DGVCVQSIE-H----P-GCVW 74 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~~g~~i~~l~gH~~~V~~v~~~p~g~l~s~s~D~tvriWd--~~~~~~~l~-h----~-~~V~ 74 (563)
+..+++...++.|..||..+.....+. +...+.+++++|+|.++.++.++ |.+|| +++. ..+. . + ..+.
T Consensus 61 ~~l~~~d~~~~~i~~~d~~~~~~~~~~-~~~~v~~i~~~~dg~l~v~~~~g-l~~~d~~~g~~-~~~~~~~~~~~~~~~~ 137 (326)
T 2ghs_A 61 GTAWWFNILERELHELHLASGRKTVHA-LPFMGSALAKISDSKQLIASDDG-LFLRDTATGVL-TLHAELESDLPGNRSN 137 (326)
T ss_dssp TEEEEEEGGGTEEEEEETTTTEEEEEE-CSSCEEEEEEEETTEEEEEETTE-EEEEETTTCCE-EEEECSSTTCTTEEEE
T ss_pred CEEEEEECCCCEEEEEECCCCcEEEEE-CCCcceEEEEeCCCeEEEEECCC-EEEEECCCCcE-EEEeeCCCCCCCCCCC
Confidence 456677777899999999444344443 45679999999999433344444 88999 4543 3333 2 1 2689
Q ss_pred EEEEccCCcEEEEe
Q 008510 75 DAKFLENGDIVTAC 88 (563)
Q Consensus 75 ~v~~~p~g~i~sgs 88 (563)
++++.|+|++..++
T Consensus 138 ~i~~d~~G~l~v~~ 151 (326)
T 2ghs_A 138 DGRMHPSGALWIGT 151 (326)
T ss_dssp EEEECTTSCEEEEE
T ss_pred CEEECCCCCEEEEe
Confidence 99999999954444
No 234
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=96.79 E-value=0.004 Score=68.68 Aligned_cols=101 Identities=11% Similarity=0.089 Sum_probs=75.7
Q ss_pred CEEEEEECCCcEEEEcC-CCceeEEEecCC-C----------cE------------------------EEEEEcCCC-eE
Q 008510 4 VGIISASHDCTIRLWAL-TGQVLMEMVGHT-A----------IV------------------------YSIDSHASG-LI 46 (563)
Q Consensus 4 ~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~-~----------~V------------------------~~v~~~p~g-~l 46 (563)
..++.++.+|.+.++|. +|+.+..+.-.. . .+ ..++++|++ .+
T Consensus 328 ~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~ 407 (677)
T 1kb0_A 328 KVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLV 407 (677)
T ss_dssp EEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEE
T ss_pred eEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEE
Confidence 57889999999999999 899887664211 1 11 146788876 55
Q ss_pred EEEeC-------------------------------------------CCcEEEEc--CCceeEEEecCCcEEEEEEccC
Q 008510 47 VSGSE-------------------------------------------DRFAKIWK--DGVCVQSIEHPGCVWDAKFLEN 81 (563)
Q Consensus 47 ~s~s~-------------------------------------------D~tvriWd--~~~~~~~l~h~~~V~~v~~~p~ 81 (563)
+.... .++|..|| +++.+..+.+...++...+...
T Consensus 408 yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~ 487 (677)
T 1kb0_A 408 YLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTTA 487 (677)
T ss_dssp EEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEEET
T ss_pred EEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCCCCCcCcceEeC
Confidence 44332 27899999 8888888887666777667766
Q ss_pred Cc-EEEEeCCCcEEEEEcCCCcee
Q 008510 82 GD-IVTACSDGVTRIWTVHSDKVA 104 (563)
Q Consensus 82 g~-i~sgs~Dg~Irvwd~~~~~~~ 104 (563)
|. ++.|+.||.+++||.++++..
T Consensus 488 g~~v~~g~~dg~l~a~D~~tG~~l 511 (677)
T 1kb0_A 488 GNVVFQGTADGRLVAYHAATGEKL 511 (677)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEE
T ss_pred CCEEEEECCCCcEEEEECCCCcee
Confidence 66 788899999999999999844
No 235
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=96.68 E-value=0.038 Score=57.00 Aligned_cols=98 Identities=12% Similarity=0.053 Sum_probs=72.6
Q ss_pred EEEEEECC------CcEEEEcC-CCceeEEEec--CC-CcEEEEEEcCCC-eEEEEe-------------------CCCc
Q 008510 5 GIISASHD------CTIRLWAL-TGQVLMEMVG--HT-AIVYSIDSHASG-LIVSGS-------------------EDRF 54 (563)
Q Consensus 5 ~l~s~s~D------gtIrlWd~-~g~~i~~l~g--H~-~~V~~v~~~p~g-~l~s~s-------------------~D~t 54 (563)
.++++..| |.|.+.|. +++.+.++.- +. ..-|.+.|+|++ .++++. .+.+
T Consensus 150 i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~ 229 (462)
T 2ece_A 150 IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNR 229 (462)
T ss_dssp EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCE
T ss_pred EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCE
Confidence 77777776 78999998 7899988862 22 445778899998 677664 3689
Q ss_pred EEEEc--CCceeEEEecC---CcEEEEEE--ccCCc-E-EEEe-----CCCcEEEEEcCCCc
Q 008510 55 AKIWK--DGVCVQSIEHP---GCVWDAKF--LENGD-I-VTAC-----SDGVTRIWTVHSDK 102 (563)
Q Consensus 55 vriWd--~~~~~~~l~h~---~~V~~v~~--~p~g~-i-~sgs-----~Dg~Irvwd~~~~~ 102 (563)
|.+|| +++.++++... .....+.| +|+|+ . +++- .+++|.+|..+.++
T Consensus 230 V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~ 291 (462)
T 2ece_A 230 IHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGK 291 (462)
T ss_dssp EEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTE
T ss_pred EEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCc
Confidence 99999 67778888743 24556666 99998 4 4444 67899988887654
No 236
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=96.65 E-value=0.034 Score=55.43 Aligned_cols=101 Identities=12% Similarity=0.079 Sum_probs=69.1
Q ss_pred CCCEEEEEE--CCCcEEEEcC-CCceeEEE-------ecCCCcEEEEEEcCCC-eEEEEeC-----CCcEEEEc--CCce
Q 008510 2 PGVGIISAS--HDCTIRLWAL-TGQVLMEM-------VGHTAIVYSIDSHASG-LIVSGSE-----DRFAKIWK--DGVC 63 (563)
Q Consensus 2 ~g~~l~s~s--~DgtIrlWd~-~g~~i~~l-------~gH~~~V~~v~~~p~g-~l~s~s~-----D~tvriWd--~~~~ 63 (563)
+|+.|+++. .++.++||.+ +|+.. .+ .+|...+++++++++| .+++-.. ++.|.+|| +++.
T Consensus 27 ~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~ 105 (343)
T 2qe8_A 27 DGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQL 105 (343)
T ss_dssp TSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEE
T ss_pred CCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeE
Confidence 477888764 2344677766 66532 22 2456789999999999 4444332 57899999 5776
Q ss_pred eEEEecC-------CcEEEEEEccC-CcE-EEEe---CCCcEEEEEcCCCce
Q 008510 64 VQSIEHP-------GCVWDAKFLEN-GDI-VTAC---SDGVTRIWTVHSDKV 103 (563)
Q Consensus 64 ~~~l~h~-------~~V~~v~~~p~-g~i-~sgs---~Dg~Irvwd~~~~~~ 103 (563)
++++..+ ..+..+++.++ |.+ ++.. .++.|.+||..+++.
T Consensus 106 ~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~ 157 (343)
T 2qe8_A 106 SRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLA 157 (343)
T ss_dssp EEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCE
T ss_pred EEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCE
Confidence 7777622 24689999985 454 5555 678999999988763
No 237
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=96.59 E-value=0.025 Score=58.43 Aligned_cols=98 Identities=9% Similarity=0.059 Sum_probs=68.7
Q ss_pred CCCEEEEEE----------CCCcEEEEcC-CCceeEEEecC-------CCcEEEEEEcCCC-eEEEEeC--CCcEEEEc-
Q 008510 2 PGVGIISAS----------HDCTIRLWAL-TGQVLMEMVGH-------TAIVYSIDSHASG-LIVSGSE--DRFAKIWK- 59 (563)
Q Consensus 2 ~g~~l~s~s----------~DgtIrlWd~-~g~~i~~l~gH-------~~~V~~v~~~p~g-~l~s~s~--D~tvriWd- 59 (563)
||++++.+. .+++|.++|. +++.++++.-- ...-+.+.++||| .+..+.. +++|.+.|
T Consensus 128 Dgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~ 207 (426)
T 3c75_H 128 DGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDL 207 (426)
T ss_dssp TSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEET
T ss_pred CCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEEC
Confidence 466666654 4778999999 88888887521 1234678999999 6666654 57899999
Q ss_pred -CCceeEEEecCCcEEEEEEccCCc--EEEEeCCCcEEEEEcCCCc
Q 008510 60 -DGVCVQSIEHPGCVWDAKFLENGD--IVTACSDGVTRIWTVHSDK 102 (563)
Q Consensus 60 -~~~~~~~l~h~~~V~~v~~~p~g~--i~sgs~Dg~Irvwd~~~~~ 102 (563)
+.+.+.++.-++. ....|+|. +++.+.||.+.+.|..+++
T Consensus 208 ~t~kvv~~I~v~g~---~~~~p~g~~~~v~~~~dG~~~~V~~~~~~ 250 (426)
T 3c75_H 208 EGKTFDRMLDVPDC---YHIFPASPTVFYMNCRDGSLARVDFADGE 250 (426)
T ss_dssp TTTEEEEEEECCSE---EEEEEEETTEEEEEETTSSEEEEECCTTC
T ss_pred CCCeEEEEEEcCCc---eeeccCCCcEEEEEcCCCCEEEEECCCCc
Confidence 7788888875443 33455543 6777778888888875554
No 238
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=96.55 E-value=0.46 Score=45.17 Aligned_cols=99 Identities=10% Similarity=-0.008 Sum_probs=69.8
Q ss_pred CCCEEEEEECCCcEEEEcCCCceeE-EEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc-CCceeEEEe---cCCcEEE
Q 008510 2 PGVGIISASHDCTIRLWALTGQVLM-EMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-DGVCVQSIE---HPGCVWD 75 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~~g~~i~-~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd-~~~~~~~l~---h~~~V~~ 75 (563)
+|+.+++...++.|..||..|+... .+..+...+.++++.++| .+++...++.|..|+ .++.. .+. ....+.+
T Consensus 72 ~g~l~v~~~~~~~v~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~-~~~~~~~~~~~~~ 150 (300)
T 2qc5_A 72 LGDIWFTENGANKIGKLSKKGGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTADGTIY-EYDLPNKGSYPAF 150 (300)
T ss_dssp TSCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTTSCEE-EEECSSTTCCEEE
T ss_pred CCCEEEEecCCCeEEEECCCCCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCCCCEE-EccCCCCCCCcee
Confidence 3566666666788999998765532 122244678999999998 666666678899999 75443 333 2347899
Q ss_pred EEEccCCcEEE-EeCCCcEEEEEcCCCc
Q 008510 76 AKFLENGDIVT-ACSDGVTRIWTVHSDK 102 (563)
Q Consensus 76 v~~~p~g~i~s-gs~Dg~Irvwd~~~~~ 102 (563)
+++.++|++.. ...++.|..||. +++
T Consensus 151 i~~d~~g~l~v~~~~~~~i~~~~~-~g~ 177 (300)
T 2qc5_A 151 ITLGSDNALWFTENQNNSIGRITN-TGK 177 (300)
T ss_dssp EEECTTSSEEEEETTTTEEEEECT-TCC
T ss_pred EEECCCCCEEEEecCCCeEEEECC-CCc
Confidence 99999999544 444788999998 444
No 239
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=96.53 E-value=0.026 Score=51.69 Aligned_cols=138 Identities=14% Similarity=0.027 Sum_probs=87.2
Q ss_pred CcchHHHHHHHHHhhcCC-CccHHHHHhhHHHHHHHhhhhccCCChhHHHHHHHHHHHHHhhhhhcCCchhhhHHHHHHH
Q 008510 418 LPANLLTGIRAVTNLFKN-SSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAAL 496 (563)
Q Consensus 418 ~~~~~ll~lR~l~N~f~~-~~~~~~~~~~~~~il~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~~~~~~~~l~~~~~ 496 (563)
.+..+.-++++|+|+..+ +..+..+.. ...+..+...+.+.+..+|..++.++.|++.........-.....+..++
T Consensus 67 ~~~v~~~a~~~L~~l~~~~~~~~~~i~~--~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~ 144 (210)
T 4db6_A 67 NEQILQEALWALSNIASGGNEQIQAVID--AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALV 144 (210)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHH--TTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcCCcHHHHHHHH--CCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHH
Confidence 456678899999999854 444444443 22344455555667889999999999999863211111111223566667
Q ss_pred HhhhhcccChhHHHHHHHHHhhhhch-hHHHHHhhhcChHHHHHHHhhcCChhHHHHHHHHHHH
Q 008510 497 EIAEEESIEVDSKYRALVAIGTLMLE-GLVKKIALDFDVGNIARVAKASKETKIAEVGADIELL 559 (563)
Q Consensus 497 ~~l~~~~~~~Ea~~R~l~AlG~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ei~~l 559 (563)
+++. ..+++.....+.||++|... ++........+.-..+.++....+.++++-+...+.-
T Consensus 145 ~ll~--~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~ 206 (210)
T 4db6_A 145 QLLS--SPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEK 206 (210)
T ss_dssp HHTT--CSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred HHHc--CCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 7774 35789999999999999983 4444444444444444444445566777766665543
No 240
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=96.53 E-value=0.11 Score=57.18 Aligned_cols=100 Identities=9% Similarity=0.056 Sum_probs=65.6
Q ss_pred CCCEEEEEECCCc-------------EEEEcC-CCc----eeEEEec-CCCcEEEEEEcCCC-e-EEEEeCC---CcEEE
Q 008510 2 PGVGIISASHDCT-------------IRLWAL-TGQ----VLMEMVG-HTAIVYSIDSHASG-L-IVSGSED---RFAKI 57 (563)
Q Consensus 2 ~g~~l~s~s~Dgt-------------IrlWd~-~g~----~i~~l~g-H~~~V~~v~~~p~g-~-l~s~s~D---~tvri 57 (563)
||+.|+.++.|.. |++|++ ++. ++....+ |...+.++.++||| . +++.+.+ ..+++
T Consensus 184 Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~ 263 (693)
T 3iuj_A 184 GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYV 263 (693)
T ss_dssp TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEE
T ss_pred CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEE
Confidence 6788888888854 999998 432 3333344 56678899999999 4 4454433 47899
Q ss_pred Ec--CCc-eeEEEe-cCCcEEEEEEccCCc-EE-EEeCC---CcEEEEEcCCCc
Q 008510 58 WK--DGV-CVQSIE-HPGCVWDAKFLENGD-IV-TACSD---GVTRIWTVHSDK 102 (563)
Q Consensus 58 Wd--~~~-~~~~l~-h~~~V~~v~~~p~g~-i~-sgs~D---g~Irvwd~~~~~ 102 (563)
|+ ++. ....+. +....... ++++|. ++ ....| +.|..+|+.++.
T Consensus 264 ~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~ 316 (693)
T 3iuj_A 264 KDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPG 316 (693)
T ss_dssp EETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCC
T ss_pred EECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCC
Confidence 98 332 455565 55555555 666665 54 44333 579999998764
No 241
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=96.50 E-value=0.012 Score=55.68 Aligned_cols=147 Identities=16% Similarity=0.061 Sum_probs=88.6
Q ss_pred HHHHHHhhcCCCCCcchHHHHHHHHHhhcCCCccH-HHHHhhHHHHHHHhhhhccCCChhHHHHHHHHHHHHHhhhhhcC
Q 008510 405 LMEMIEKVSSNPTLPANLLTGIRAVTNLFKNSSWY-SWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKK 483 (563)
Q Consensus 405 ~~~~l~~~~~~~~~~~~~ll~lR~l~N~f~~~~~~-~~~~~~~~~il~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~ 483 (563)
+..++..+.. ..+..+..++++|+|+..+...+ ..+.. ..++..+...+.+.+..+|..++..+.|++.......
T Consensus 98 i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 173 (252)
T 4db8_A 98 LPALVQLLSS--PNEQILQEALWALSNIASGGNEQIQAVID--AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 173 (252)
T ss_dssp HHHHHHGGGC--SCHHHHHHHHHHHHHHTTSCHHHHHHHHH--TTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHcC--CCHHHHHHHHHHHHHhhcCCchHHHHHHH--CCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHH
Confidence 4444444433 24567789999999999988887 44443 2344555555566788999999999999985321111
Q ss_pred CchhhhHHHHHHHHhhhhcccChhHHHHHHHHHhhhhc-hhHHHHHhhhcChHHHHHHHhhcCChhHHHHHHHHH
Q 008510 484 DEEGQSHVLSAALEIAEEESIEVDSKYRALVAIGTLML-EGLVKKIALDFDVGNIARVAKASKETKIAEVGADIE 557 (563)
Q Consensus 484 ~~~~~~~l~~~~~~~l~~~~~~~Ea~~R~l~AlG~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ei~ 557 (563)
..-.....+..+++++. ..+++.....+.+|++|.. .++..+.....++-..+-.+....+.++++-+..++
T Consensus 174 ~~~~~~~~i~~L~~ll~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L 246 (252)
T 4db8_A 174 QAVIDAGALPALVQLLS--SPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEAL 246 (252)
T ss_dssp HHHHHTTCHHHHHHGGG--CSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHH
T ss_pred HHHHHCCCHHHHHHHHC--CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHH
Confidence 10011234566677774 3588999999999999986 334333333333322332222344556666554443
No 242
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=96.45 E-value=0.012 Score=59.65 Aligned_cols=95 Identities=12% Similarity=0.013 Sum_probs=72.0
Q ss_pred CEEEEEECCC----cEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEe----------CCCcEEEEc--CCceeE
Q 008510 4 VGIISASHDC----TIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGS----------EDRFAKIWK--DGVCVQ 65 (563)
Q Consensus 4 ~~l~s~s~Dg----tIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s----------~D~tvriWd--~~~~~~ 65 (563)
+.+++-..++ +|.+.|. +++.+.++..-..+ .+.++||| .+..+. .+++|.+|| +++.+.
T Consensus 33 ~~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~ 110 (368)
T 1mda_H 33 RSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIA 110 (368)
T ss_dssp EEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEE
T ss_pred eEEEECCccCCccceEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEE
Confidence 4556665555 7889999 89999998754555 79999999 555543 478999999 889999
Q ss_pred EEecC--------CcEEEEEEccCCc-EEEEeC--CCcEEE--EEcCC
Q 008510 66 SIEHP--------GCVWDAKFLENGD-IVTACS--DGVTRI--WTVHS 100 (563)
Q Consensus 66 ~l~h~--------~~V~~v~~~p~g~-i~sgs~--Dg~Irv--wd~~~ 100 (563)
++..+ .....++++|||+ ++++.. ++.|.+ +|..+
T Consensus 111 ~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t 158 (368)
T 1mda_H 111 DIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD 158 (368)
T ss_dssp EEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE
T ss_pred EEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh
Confidence 98733 2467899999998 666653 467888 99876
No 243
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=96.43 E-value=0.055 Score=52.87 Aligned_cols=97 Identities=15% Similarity=0.074 Sum_probs=72.2
Q ss_pred CCEEEEEECCCcEEEEcCCCceeEEEecCCCcEEEEEEcCCCeEEEEeCCCcEEEEc-CCceeEEEe-cCCcEEEEEEcc
Q 008510 3 GVGIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWK-DGVCVQSIE-HPGCVWDAKFLE 80 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~~g~~i~~l~gH~~~V~~v~~~p~g~l~s~s~D~tvriWd-~~~~~~~l~-h~~~V~~v~~~p 80 (563)
+..+..++.++.|..+|..|+....+..+...+.++...++|.+..++.++.+..+| .++.+..+. ....+.++...+
T Consensus 107 ~~~l~v~t~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~d~ 186 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTDGTEKWRFKTKKAIYATPIVSEDGTIYVGSNDNYLYAINPDGTEKWRFKTNDAITSAASIGK 186 (330)
T ss_dssp TTEEEEECTTSEEEEECTTSCEEEEEECSSCCCSCCEECTTSCEEEECTTSEEEEECTTSCEEEEEECSSCCCSCCEECT
T ss_pred CCEEEEEecCCEEEEEcCCCCEEEEEcCCCceeeeeEEcCCCEEEEEcCCCEEEEECCCCCEeEEEecCCCceeeeEEcC
Confidence 345677888888888888787777777777778888888888666678888888888 766666666 334677777777
Q ss_pred CCcEEEEeCCCcEEEEEcCCCc
Q 008510 81 NGDIVTACSDGVTRIWTVHSDK 102 (563)
Q Consensus 81 ~g~i~sgs~Dg~Irvwd~~~~~ 102 (563)
+|.+..++ +.+..|| .+++
T Consensus 187 ~g~l~v~t--~~l~~~d-~~g~ 205 (330)
T 3hxj_A 187 DGTIYFGS--DKVYAIN-PDGT 205 (330)
T ss_dssp TCCEEEES--SSEEEEC-TTSC
T ss_pred CCEEEEEe--CEEEEEC-CCCc
Confidence 77766666 7778888 4543
No 244
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=96.38 E-value=0.066 Score=55.18 Aligned_cols=98 Identities=8% Similarity=0.067 Sum_probs=69.7
Q ss_pred EEEEEECCCcEEEEcC-CC----ceeEEEe------cC-CCcEEEEEEcCCCeEEEEeCC------CcEEEEc--CCcee
Q 008510 5 GIISASHDCTIRLWAL-TG----QVLMEMV------GH-TAIVYSIDSHASGLIVSGSED------RFAKIWK--DGVCV 64 (563)
Q Consensus 5 ~l~s~s~DgtIrlWd~-~g----~~i~~l~------gH-~~~V~~v~~~p~g~l~s~s~D------~tvriWd--~~~~~ 64 (563)
.+++|..+++|.+.|+ +. +.+++++ .+ ...-..+.+.|+|.++++..+ +.+.+.| +.+.+
T Consensus 98 l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdGi~Vs~~g~~~g~~~g~v~vlD~~T~~v~ 177 (462)
T 2ece_A 98 LIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDAIYISALGNEEGEGPGGILMLDHYSFEPL 177 (462)
T ss_dssp EEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSCEEEEEEEETTSCSCCEEEEECTTTCCEE
T ss_pred EEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCeEEEEcCCCcCCCCCCeEEEEECCCCeEE
Confidence 4667778899999998 33 5666663 11 124466788899955566555 7899999 68888
Q ss_pred EEEe---cC-CcEEEEEEccCCc-EEEEe-------------------CCCcEEEEEcCCCc
Q 008510 65 QSIE---HP-GCVWDAKFLENGD-IVTAC-------------------SDGVTRIWTVHSDK 102 (563)
Q Consensus 65 ~~l~---h~-~~V~~v~~~p~g~-i~sgs-------------------~Dg~Irvwd~~~~~ 102 (563)
.++. .+ ..-+.+-|+|+++ +++.. .+.+|.+||+.+++
T Consensus 178 ~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k 239 (462)
T 2ece_A 178 GKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRK 239 (462)
T ss_dssp EECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTE
T ss_pred EEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCc
Confidence 8886 22 2345677899999 55543 37899999999876
No 245
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=96.09 E-value=0.51 Score=45.14 Aligned_cols=119 Identities=11% Similarity=-0.002 Sum_probs=75.3
Q ss_pred CceeEEEecCC--CcEEEEEEcCCC-eEEEEeC--CCcEEEEc--CCceeEEEecCC--cEEEEEEccCCcE-EEEeCCC
Q 008510 22 GQVLMEMVGHT--AIVYSIDSHASG-LIVSGSE--DRFAKIWK--DGVCVQSIEHPG--CVWDAKFLENGDI-VTACSDG 91 (563)
Q Consensus 22 g~~i~~l~gH~--~~V~~v~~~p~g-~l~s~s~--D~tvriWd--~~~~~~~l~h~~--~V~~v~~~p~g~i-~sgs~Dg 91 (563)
.+.+.++. |. .+...+.|+|++ .+++.+. +++|++.| +++.++.+..+. ..-.+++.. +++ ++.-.++
T Consensus 9 ~~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g-~~lyv~t~~~~ 86 (266)
T 2iwa_A 9 VEVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLN-EKLYQVVWLKN 86 (266)
T ss_dssp EEEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEET-TEEEEEETTCS
T ss_pred ceEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeC-CEEEEEEecCC
Confidence 35566663 55 457899999988 5555553 57899999 889888887333 233455542 244 4555688
Q ss_pred cEEEEEcCCCceeceeeec-cccccc---ceeEEeeccCCceEEEeCCCCceeee
Q 008510 92 VTRIWTVHSDKVADSLELE-AYASEL---SQYKLCRKKVGGLKLEDLPGLEALQI 142 (563)
Q Consensus 92 ~Irvwd~~~~~~~~~~~~~-~~~~~v---~~~~~~~~~~~~i~~~d~~~~~~l~~ 142 (563)
.+.++|..+.+........ ...-.+ ....+.....+.+.+.|..+.+....
T Consensus 87 ~v~viD~~t~~v~~~i~~g~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~ 141 (266)
T 2iwa_A 87 IGFIYDRRTLSNIKNFTHQMKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKK 141 (266)
T ss_dssp EEEEEETTTTEEEEEEECCSSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEE
T ss_pred EEEEEECCCCcEEEEEECCCCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEE
Confidence 9999999998866554433 111001 12233334567899999887665443
No 246
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=96.09 E-value=0.077 Score=49.67 Aligned_cols=137 Identities=11% Similarity=0.024 Sum_probs=85.2
Q ss_pred CcchHHHHHHHHHhhcC-CCccHHHHHhhHHHHHHHhhhhccCCChhHHHHHHHHHHHHHhhhhhcCCchhhhHHHHHHH
Q 008510 418 LPANLLTGIRAVTNLFK-NSSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAAL 496 (563)
Q Consensus 418 ~~~~~ll~lR~l~N~f~-~~~~~~~~~~~~~~il~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~~~~~~~~l~~~~~ 496 (563)
.+..+.-++++|+|+.. ++..+..+.. ..++..+...+.+.+..+|..++..+.|++.........-.....+..++
T Consensus 99 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~ 176 (252)
T 4hxt_A 99 DSEVQKEAARALANIASGPDEAIKAIVD--AGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLV 176 (252)
T ss_dssp SHHHHHHHHHHHHHHTTSCHHHHHHHHH--TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHH--CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHH
Confidence 45677889999999995 4455554443 23455555566677888999999999999864211111111123566667
Q ss_pred HhhhhcccChhHHHHHHHHHhhhhc-hhHHHHHhhhcChHHHHHHHhhcCChhHHHHHHHHHH
Q 008510 497 EIAEEESIEVDSKYRALVAIGTLML-EGLVKKIALDFDVGNIARVAKASKETKIAEVGADIEL 558 (563)
Q Consensus 497 ~~l~~~~~~~Ea~~R~l~AlG~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ei~~ 558 (563)
+++. ..+++.....+.+|++|.. .++..+.....++-..+-.+....+.++++-+..++.
T Consensus 177 ~ll~--~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~ 237 (252)
T 4hxt_A 177 KLLT--STDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALE 237 (252)
T ss_dssp HHTT--CSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred HHHC--CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHH
Confidence 7774 4678999999999999997 4444443333343333333333445566665555543
No 247
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=95.89 E-value=0.035 Score=61.30 Aligned_cols=52 Identities=8% Similarity=0.143 Sum_probs=39.8
Q ss_pred CCcEEEEc--CCceeEEEecCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCce
Q 008510 52 DRFAKIWK--DGVCVQSIEHPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKV 103 (563)
Q Consensus 52 D~tvriWd--~~~~~~~l~h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~ 103 (563)
+++++.|| +++.+..+.+...++.-.+...|. +..|+.||.++.||.++++.
T Consensus 454 ~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~ 508 (689)
T 1yiq_A 454 SGKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEK 508 (689)
T ss_dssp EEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred ceeEEEEECCCCCeEeEccCCCCccCccceECCCEEEEECCCCcEEEEECCCCcc
Confidence 47799999 888888877555555445555555 78889999999999999983
No 248
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=95.86 E-value=1.2 Score=41.92 Aligned_cols=98 Identities=11% Similarity=-0.033 Sum_probs=64.7
Q ss_pred CEEEEEECCCcEEEEcCCCceeEEEe-cCCCcEEEEEEcCCC--eEEEEeCCCcEEEEc-CCceeEEEe-cC-CcEEEEE
Q 008510 4 VGIISASHDCTIRLWALTGQVLMEMV-GHTAIVYSIDSHASG--LIVSGSEDRFAKIWK-DGVCVQSIE-HP-GCVWDAK 77 (563)
Q Consensus 4 ~~l~s~s~DgtIrlWd~~g~~i~~l~-gH~~~V~~v~~~p~g--~l~s~s~D~tvriWd-~~~~~~~l~-h~-~~V~~v~ 77 (563)
..+++...++.|..++.+|.....+. .......+++++|++ .+++-...+.|.+++ ++.....+. .. .....++
T Consensus 49 ~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~ 128 (267)
T 1npe_A 49 VVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIV 128 (267)
T ss_dssp EEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEE
T ss_pred EEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEE
Confidence 45555656788999998655433333 233567899999864 556666678899999 665444443 22 4678999
Q ss_pred EccC-CcEEEEeC---CCcEEEEEcCCC
Q 008510 78 FLEN-GDIVTACS---DGVTRIWTVHSD 101 (563)
Q Consensus 78 ~~p~-g~i~sgs~---Dg~Irvwd~~~~ 101 (563)
+.|+ |.+..+.. .+.|..++.+..
T Consensus 129 vd~~~g~lyv~~~~~~~~~I~~~~~dg~ 156 (267)
T 1npe_A 129 TDPVRGNLYWTDWNRDNPKIETSHMDGT 156 (267)
T ss_dssp EETTTTEEEEEECCSSSCEEEEEETTSC
T ss_pred EeeCCCEEEEEECCCCCcEEEEEecCCC
Confidence 9995 55544443 368888887643
No 249
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=95.77 E-value=1.3 Score=43.10 Aligned_cols=135 Identities=9% Similarity=0.029 Sum_probs=79.3
Q ss_pred CCCEEEEEECCCcEEEEcCCCceeEEEecC--------------------CCcEEEEEEcC-CCeEEEEeCCCcEEEEc-
Q 008510 2 PGVGIISASHDCTIRLWALTGQVLMEMVGH--------------------TAIVYSIDSHA-SGLIVSGSEDRFAKIWK- 59 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~~g~~i~~l~gH--------------------~~~V~~v~~~p-~g~l~s~s~D~tvriWd- 59 (563)
+|+.+.++..++.|..|+..+..+..+... .....++++.+ +|.+..+...+.+..++
T Consensus 29 ~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~~~~i~~~d~ 108 (322)
T 2fp8_A 29 TNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCYYHLSVVGS 108 (322)
T ss_dssp TCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEETTTEEEEECT
T ss_pred CCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEECCCCEEEEeC
Confidence 356577788889999999854434444311 13578999997 67555555555688888
Q ss_pred CCceeEEEe---c---CCcEEEEEEcc-CCcEEEEeC------------------CCcEEEEEcCCCceecee-eec---
Q 008510 60 DGVCVQSIE---H---PGCVWDAKFLE-NGDIVTACS------------------DGVTRIWTVHSDKVADSL-ELE--- 110 (563)
Q Consensus 60 ~~~~~~~l~---h---~~~V~~v~~~p-~g~i~sgs~------------------Dg~Irvwd~~~~~~~~~~-~~~--- 110 (563)
.+..+..+. . -.....+++.+ +|++..+.. ++.|..||..+++..... .+.
T Consensus 109 ~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~ 188 (322)
T 2fp8_A 109 EGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPG 188 (322)
T ss_dssp TCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEEESCCC
T ss_pred CCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEeccCCccCc
Confidence 544444443 1 12578899999 999554432 367888888776532111 110
Q ss_pred ccccccc-e-eEEeeccCCceEEEeCCC
Q 008510 111 AYASELS-Q-YKLCRKKVGGLKLEDLPG 136 (563)
Q Consensus 111 ~~~~~v~-~-~~~~~~~~~~i~~~d~~~ 136 (563)
...-... . +.++....+.|..+++.+
T Consensus 189 gia~~~dg~~lyv~d~~~~~I~~~~~~~ 216 (322)
T 2fp8_A 189 GAEVSADSSFVLVAEFLSHQIVKYWLEG 216 (322)
T ss_dssp EEEECTTSSEEEEEEGGGTEEEEEESSS
T ss_pred ceEECCCCCEEEEEeCCCCeEEEEECCC
Confidence 0000111 2 333444556788887764
No 250
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=95.77 E-value=0.23 Score=46.54 Aligned_cols=112 Identities=18% Similarity=0.083 Sum_probs=73.0
Q ss_pred HHHHHHHhhcCCCCCcchHHHHHHHHHhhcCC-CccHHHHHhhHHHHHHHhhhhccCCChhHHHHHHHHHHHHHhhhhhc
Q 008510 404 VLMEMIEKVSSNPTLPANLLTGIRAVTNLFKN-SSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEK 482 (563)
Q Consensus 404 ~~~~~l~~~~~~~~~~~~~ll~lR~l~N~f~~-~~~~~~~~~~~~~il~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~ 482 (563)
.+..++..+... .+..+.-++++|.|+... +..+..+... .++..+...+.+.+..+|..++.++.|++......
T Consensus 55 ~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~~~~~~~i~~~--g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 130 (252)
T 4db8_A 55 ALPALVQLLSSP--NEQILQEALWALSNIASGGNEQIQAVIDA--GALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 130 (252)
T ss_dssp HHHHHHHGGGCS--CHHHHHHHHHHHHHHTTSCHHHHHHHHHT--THHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred cHHHHHHHHcCC--CHHHHHHHHHHHHHHhcCCHHHHHHHHHc--CCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchH
Confidence 344455444432 256678999999999974 4555444432 34455555566678899999999999997532111
Q ss_pred CCchhhhHHHHHHHHhhhhcccChhHHHHHHHHHhhhhc
Q 008510 483 KDEEGQSHVLSAALEIAEEESIEVDSKYRALVAIGTLML 521 (563)
Q Consensus 483 ~~~~~~~~l~~~~~~~l~~~~~~~Ea~~R~l~AlG~l~~ 521 (563)
...-.....+..+++.+. ..+++.....+.+|++|..
T Consensus 131 ~~~~~~~~~i~~L~~lL~--~~~~~v~~~a~~~L~~l~~ 167 (252)
T 4db8_A 131 IQAVIDAGALPALVQLLS--SPNEQILQEALWALSNIAS 167 (252)
T ss_dssp HHHHHHTTHHHHHHHGGG--CSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHh--CCCHHHHHHHHHHHHHHHc
Confidence 011111235666677774 3578999999999999997
No 251
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=95.60 E-value=0.19 Score=46.81 Aligned_cols=111 Identities=13% Similarity=0.075 Sum_probs=72.6
Q ss_pred HHHHHHhhcCCCCCcchHHHHHHHHHhhcCC-CccHHHHHhhHHHHHHHhhhhccCCChhHHHHHHHHHHHHHhhhhhcC
Q 008510 405 LMEMIEKVSSNPTLPANLLTGIRAVTNLFKN-SSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKK 483 (563)
Q Consensus 405 ~~~~l~~~~~~~~~~~~~ll~lR~l~N~f~~-~~~~~~~~~~~~~il~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~ 483 (563)
+..++..+.. ..+..+..++++|+|+..+ +..+..+.. ..++..+...+.+.+..+|..++.++.|++.......
T Consensus 46 i~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~ 121 (252)
T 4hxt_A 46 VEVLVKLLTS--TDSEVQKEAARALANIASGPDEAIKAIVD--AGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAI 121 (252)
T ss_dssp HHHHHHHTTC--SCHHHHHHHHHHHHHHTTSCHHHHHHHHH--TTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHhC--CCHHHHHHHHHHHHHHHcCChHHHHHHHH--CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 4444444333 2356678999999999988 555555543 2234445555556788999999999999985322111
Q ss_pred CchhhhHHHHHHHHhhhhcccChhHHHHHHHHHhhhhc
Q 008510 484 DEEGQSHVLSAALEIAEEESIEVDSKYRALVAIGTLML 521 (563)
Q Consensus 484 ~~~~~~~l~~~~~~~l~~~~~~~Ea~~R~l~AlG~l~~ 521 (563)
..-.....+..+++.+. ..+++.....+.+|++|..
T Consensus 122 ~~~~~~~~i~~L~~~l~--~~~~~~~~~a~~~L~~l~~ 157 (252)
T 4hxt_A 122 KAIVDAGGVEVLVKLLT--STDSEVQKEAARALANIAS 157 (252)
T ss_dssp HHHHHTTHHHHHHHHTT--CSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHCCCHHHHHHHHc--CCCHHHHHHHHHHHHHHHc
Confidence 11111234566677774 4678999999999999987
No 252
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=95.60 E-value=0.047 Score=60.77 Aligned_cols=139 Identities=9% Similarity=0.042 Sum_probs=90.6
Q ss_pred cchHHHHHHHHHhhcCCCccHHHHHhhHHHHHHHhhhhccCCChhHHHHHHHHHHHHHhhhhhcCCchhh-hHHHHHHHH
Q 008510 419 PANLLTGIRAVTNLFKNSSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDEEGQ-SHVLSAALE 497 (563)
Q Consensus 419 ~~~~ll~lR~l~N~f~~~~~~~~~~~~~~~il~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~~~~~~-~~l~~~~~~ 497 (563)
+..+--+++++||+..++..+..+... ...+..+...+.+.+..+|.+++..+-|++.........-.. ...+..+++
T Consensus 637 ~~Vq~~A~~~L~NLa~~~~~~~~~v~~-~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~ 715 (810)
T 3now_A 637 LYLTRAAAQCLCNLVMSEDVIKMFEGN-NDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHT 715 (810)
T ss_dssp TTHHHHHHHHHHHHTTSHHHHHHHHSS-SSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCChHHHHHHHhc-cCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHH
Confidence 456788999999999988766655521 234556666667778899999999999999742111100000 224455667
Q ss_pred hhhhcccChhHHHHHHHHHhhhhc-hhHHHHHhhhcChHHHHHHHh-hc--CChhHHHHHHHHHHHh
Q 008510 498 IAEEESIEVDSKYRALVAIGTLML-EGLVKKIALDFDVGNIARVAK-AS--KETKIAEVGADIELLA 560 (563)
Q Consensus 498 ~l~~~~~~~Ea~~R~l~AlG~l~~-~~~~~~~~~~~~~~~~~~~~~-~~--~~~~i~~~~~ei~~ll 560 (563)
++. ..|.+..+|.+.||+|+.. +++........|.-..+..+. .+ +..++.+++.+.++.+
T Consensus 716 LL~--s~d~~vq~~A~~aL~NL~~~s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~l 780 (810)
T 3now_A 716 LIA--NPSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAA 780 (810)
T ss_dssp HHT--CSSHHHHHHHHHHHHHHHTTCHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHH
T ss_pred HHC--CCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHH
Confidence 774 4788999999999999997 334433333334333333332 12 4568999988887654
No 253
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=95.52 E-value=0.91 Score=42.81 Aligned_cols=99 Identities=9% Similarity=-0.031 Sum_probs=65.0
Q ss_pred CCEEEEEECCCcEEEEcCCCceeEEEecC-CCcEEEEEEcCC-Ce-EEEEeC--CCcEEEEc-CCceeEEEe--cCCcEE
Q 008510 3 GVGIISASHDCTIRLWALTGQVLMEMVGH-TAIVYSIDSHAS-GL-IVSGSE--DRFAKIWK-DGVCVQSIE--HPGCVW 74 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~~g~~i~~l~gH-~~~V~~v~~~p~-g~-l~s~s~--D~tvriWd-~~~~~~~l~--h~~~V~ 74 (563)
+..+++....+.|.+++.+|.....+... ......++++|+ +. +++... .+.|..++ ++...+.+. .-....
T Consensus 91 ~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~ 170 (267)
T 1npe_A 91 RTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPN 170 (267)
T ss_dssp TEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEE
T ss_pred CeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCc
Confidence 34455556677899999866544444322 245789999995 54 444433 35787777 666555554 223678
Q ss_pred EEEEccCCc-E-EEEeCCCcEEEEEcCCC
Q 008510 75 DAKFLENGD-I-VTACSDGVTRIWTVHSD 101 (563)
Q Consensus 75 ~v~~~p~g~-i-~sgs~Dg~Irvwd~~~~ 101 (563)
.+++.|++. + ++-...+.|.++|....
T Consensus 171 gia~d~~~~~lyv~d~~~~~I~~~~~~g~ 199 (267)
T 1npe_A 171 GLTFDAFSSQLCWVDAGTHRAECLNPAQP 199 (267)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTEE
T ss_pred EEEEcCCCCEEEEEECCCCEEEEEecCCC
Confidence 999999765 5 55556689999998754
No 254
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=95.47 E-value=0.048 Score=54.29 Aligned_cols=98 Identities=11% Similarity=0.032 Sum_probs=58.1
Q ss_pred CEEEEEE---CCCcEEEEcC-CCceeEEEecCCC-----------------------------cEEEEEEcCCC-eEEEE
Q 008510 4 VGIISAS---HDCTIRLWAL-TGQVLMEMVGHTA-----------------------------IVYSIDSHASG-LIVSG 49 (563)
Q Consensus 4 ~~l~s~s---~DgtIrlWd~-~g~~i~~l~gH~~-----------------------------~V~~v~~~p~g-~l~s~ 49 (563)
..+++.+ .++.|.+||+ +++..+.+.+|.. .+..++++|+| .+..+
T Consensus 133 ~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~ 212 (343)
T 2qe8_A 133 FVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLS 212 (343)
T ss_dssp EEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEE
T ss_pred EEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEE
Confidence 4456655 6889999999 6877776665421 24667777777 56555
Q ss_pred eCCCcEEEEc-C------Cc--------eeEEEecCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCc
Q 008510 50 SEDRFAKIWK-D------GV--------CVQSIEHPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDK 102 (563)
Q Consensus 50 s~D~tvriWd-~------~~--------~~~~l~h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~ 102 (563)
..++. ++|. + +. .+..+.+......+++.++|. +++...++.|.+||..+++
T Consensus 213 ~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~ 280 (343)
T 2qe8_A 213 PMHST-SMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRA 280 (343)
T ss_dssp ESSCS-EEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTE
T ss_pred eCCCC-eEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCC
Confidence 55543 3443 1 00 012222333455677777777 4555566777788774443
No 255
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=95.20 E-value=1.1 Score=42.56 Aligned_cols=117 Identities=16% Similarity=0.192 Sum_probs=72.6
Q ss_pred ceeEEEecCC--CcEEEEEEcCCC-eEEEEeCCC--cEEEEc--CCceeEEEecCCcEEEEEEccCCc-E-EEEeCCCcE
Q 008510 23 QVLMEMVGHT--AIVYSIDSHASG-LIVSGSEDR--FAKIWK--DGVCVQSIEHPGCVWDAKFLENGD-I-VTACSDGVT 93 (563)
Q Consensus 23 ~~i~~l~gH~--~~V~~v~~~p~g-~l~s~s~D~--tvriWd--~~~~~~~l~h~~~V~~v~~~p~g~-i-~sgs~Dg~I 93 (563)
+.++++ .|. .+...+.|+ ++ .+.|+|.+| +|++.| +++.++.+..+.........++|+ + +..-.++.+
T Consensus 32 ~vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v 109 (262)
T 3nol_A 32 QIVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLG 109 (262)
T ss_dssp EEEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEE
T ss_pred EEEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEE
Confidence 455666 454 566889998 67 777888876 899999 899999888555554444444454 5 444458899
Q ss_pred EEEEcCCCceeceeeecccccc---cceeEEeeccCCceEEEeCCCCceee
Q 008510 94 RIWTVHSDKVADSLELEAYASE---LSQYKLCRKKVGGLKLEDLPGLEALQ 141 (563)
Q Consensus 94 rvwd~~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~~i~~~d~~~~~~l~ 141 (563)
.+||..+.+...........-. -....+.....+.|.++|..+.+.+.
T Consensus 110 ~v~D~~t~~~~~ti~~~~eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~ 160 (262)
T 3nol_A 110 FVWNIRNLRQVRSFNYDGEGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVR 160 (262)
T ss_dssp EEEETTTCCEEEEEECSSCCCCEEECSSCEEECCSSSEEEEECTTTCSEEE
T ss_pred EEEECccCcEEEEEECCCCceEEecCCCEEEEECCCCeEEEEcCCCCeEEE
Confidence 9999999886554443321100 01222222334566666666555443
No 256
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=95.10 E-value=0.63 Score=50.91 Aligned_cols=138 Identities=14% Similarity=0.145 Sum_probs=84.6
Q ss_pred CCEEEEEECCCcEEEEcC-CCceeEEEecCCC-cEEEEEEcC---CCeEEEEeC------CCcEEEEc--CCceeEEEec
Q 008510 3 GVGIISASHDCTIRLWAL-TGQVLMEMVGHTA-IVYSIDSHA---SGLIVSGSE------DRFAKIWK--DGVCVQSIEH 69 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~-~V~~v~~~p---~g~l~s~s~------D~tvriWd--~~~~~~~l~h 69 (563)
+..++.++.|+.|..+|. +|+.+.++..... ..+.+...| ++.++.++. ++.|..+| +|+.+..+..
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~ 196 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYT 196 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecc
Confidence 467888889999999998 8999888765311 011111112 454444432 58999999 8998887752
Q ss_pred -C---C---------------------------cE-EEEEEccCCc-EEEEeCCC-------------------cEEEEE
Q 008510 70 -P---G---------------------------CV-WDAKFLENGD-IVTACSDG-------------------VTRIWT 97 (563)
Q Consensus 70 -~---~---------------------------~V-~~v~~~p~g~-i~sgs~Dg-------------------~Irvwd 97 (563)
+ . .+ ..+++.|++. +..++.++ .|..+|
T Consensus 197 ~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD 276 (668)
T 1kv9_A 197 VPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIR 276 (668)
T ss_dssp SCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEEC
T ss_pred cCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEc
Confidence 1 1 11 1467777655 67776665 399999
Q ss_pred cCCCceeceeeecccc-------cc-----------cceeEEeeccCCceEEEeCCCCcee
Q 008510 98 VHSDKVADSLELEAYA-------SE-----------LSQYKLCRKKVGGLKLEDLPGLEAL 140 (563)
Q Consensus 98 ~~~~~~~~~~~~~~~~-------~~-----------v~~~~~~~~~~~~i~~~d~~~~~~l 140 (563)
.++++..=......+. .. .....+....+|.+.++|..+++.+
T Consensus 277 ~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l 337 (668)
T 1kv9_A 277 PDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLI 337 (668)
T ss_dssp TTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred CCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEe
Confidence 9998854222221111 00 0113455667788888887776655
No 257
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=94.58 E-value=0.12 Score=52.23 Aligned_cols=68 Identities=12% Similarity=-0.003 Sum_probs=51.6
Q ss_pred EEEcCCC-eEE-EEe---C-----CCcEEEEc--CCceeEEEecCCcEEEEEEccCCc--EEEEe-CCCcEEEEEcCCCc
Q 008510 38 IDSHASG-LIV-SGS---E-----DRFAKIWK--DGVCVQSIEHPGCVWDAKFLENGD--IVTAC-SDGVTRIWTVHSDK 102 (563)
Q Consensus 38 v~~~p~g-~l~-s~s---~-----D~tvriWd--~~~~~~~l~h~~~V~~v~~~p~g~--i~sgs-~Dg~Irvwd~~~~~ 102 (563)
++++|++ .+. +.. . +..+.++| +.+.+.++.-....+.++|+|+|+ +++.. .++.|.|+|..+++
T Consensus 269 v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~k 348 (368)
T 1mda_H 269 VAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQ 348 (368)
T ss_dssp EEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCE
T ss_pred eEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEccCCCCeEEEEECCCCc
Confidence 6799998 444 433 2 23566999 788888887445799999999997 45666 59999999999998
Q ss_pred eec
Q 008510 103 VAD 105 (563)
Q Consensus 103 ~~~ 105 (563)
...
T Consensus 349 vv~ 351 (368)
T 1mda_H 349 DQS 351 (368)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
No 258
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=94.56 E-value=0.19 Score=53.91 Aligned_cols=52 Identities=13% Similarity=0.121 Sum_probs=36.3
Q ss_pred CCcEEEEc--CCceeEEEecCCcEEEEEEcc-CCcEEEEeCCCcEEEEEcCCCce
Q 008510 52 DRFAKIWK--DGVCVQSIEHPGCVWDAKFLE-NGDIVTACSDGVTRIWTVHSDKV 103 (563)
Q Consensus 52 D~tvriWd--~~~~~~~l~h~~~V~~v~~~p-~g~i~sgs~Dg~Irvwd~~~~~~ 103 (563)
++.|..|| +++.+..+.+...+++..+.. ++.+..++.||.++.||.++++.
T Consensus 443 ~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~ 497 (571)
T 2ad6_A 443 MGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKE 497 (571)
T ss_dssp CEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred CCeEEEEECCCCCEEEEecCCCCccceeEEECCCEEEEEcCCCeEEEEECCCCCE
Confidence 46788888 778777776544444433333 44477788899999999988873
No 259
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=94.52 E-value=0.77 Score=50.05 Aligned_cols=103 Identities=13% Similarity=0.196 Sum_probs=65.6
Q ss_pred CCCEEEEEECCC-----------cEEEEcC-CCc--eeEEEe-cCCCcEEEEEEcCCC-eEEEEeC-CCcEEEEc--CCc
Q 008510 2 PGVGIISASHDC-----------TIRLWAL-TGQ--VLMEMV-GHTAIVYSIDSHASG-LIVSGSE-DRFAKIWK--DGV 62 (563)
Q Consensus 2 ~g~~l~s~s~Dg-----------tIrlWd~-~g~--~i~~l~-gH~~~V~~v~~~p~g-~l~s~s~-D~tvriWd--~~~ 62 (563)
+|+.++.||.+. .+.+||. +++ .+..+. .+.....++++.++| .++.||. +..+.+|| +.+
T Consensus 197 ~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~ 276 (656)
T 1k3i_A 197 SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDS 276 (656)
T ss_dssp TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTE
T ss_pred CCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEEecCcCCc
Confidence 567888887653 5889998 443 233332 234445567778888 7778874 45799999 333
Q ss_pred eeEE--EecCCcEEEEEEccCCc-EEEEe-CC-----CcEEEEEcCCCcee
Q 008510 63 CVQS--IEHPGCVWDAKFLENGD-IVTAC-SD-----GVTRIWTVHSDKVA 104 (563)
Q Consensus 63 ~~~~--l~h~~~V~~v~~~p~g~-i~sgs-~D-----g~Irvwd~~~~~~~ 104 (563)
.... +..+..-.+++..++|+ ++.|+ .+ ..+.+||..+.+..
T Consensus 277 W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~ 327 (656)
T 1k3i_A 277 WIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWT 327 (656)
T ss_dssp EEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEE
T ss_pred eeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcce
Confidence 2221 11233334566778888 67777 34 56999999887644
No 260
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=94.49 E-value=0.36 Score=43.78 Aligned_cols=100 Identities=16% Similarity=0.071 Sum_probs=66.1
Q ss_pred CcchHHHHHHHHHhhcCCC-ccHHHHHhhHHHHHHHhhhhccCCChhHHHHHHHHHHHHHhhhhhcCCchhhhHHHHHHH
Q 008510 418 LPANLLTGIRAVTNLFKNS-SWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAAL 496 (563)
Q Consensus 418 ~~~~~ll~lR~l~N~f~~~-~~~~~~~~~~~~il~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~~~~~~~~l~~~~~ 496 (563)
.+..+.-+++.|+|+.... ..+..+.. ..++..+...+.+.+..+|..++..+.|++.........-.....+..++
T Consensus 25 ~~~v~~~a~~~L~~l~~~~~~~~~~i~~--~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~ 102 (210)
T 4db6_A 25 DQQELQSALRKLSQIASGGNEQIQAVID--AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALV 102 (210)
T ss_dssp CHHHHHHHHHHHHHHHTSCHHHHHHHHH--TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHH--cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHH
Confidence 4566788999999998544 44444443 23445555556667889999999999999853211111111122455667
Q ss_pred HhhhhcccChhHHHHHHHHHhhhhc
Q 008510 497 EIAEEESIEVDSKYRALVAIGTLML 521 (563)
Q Consensus 497 ~~l~~~~~~~Ea~~R~l~AlG~l~~ 521 (563)
+.+. ..+++.....+.+|++|..
T Consensus 103 ~lL~--~~~~~v~~~a~~~L~~l~~ 125 (210)
T 4db6_A 103 QLLS--SPNEQILQEALWALSNIAS 125 (210)
T ss_dssp HHTT--CSCHHHHHHHHHHHHHHTT
T ss_pred HHHc--CCcHHHHHHHHHHHHHHHc
Confidence 7774 3578999999999999986
No 261
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=94.27 E-value=3.4 Score=44.12 Aligned_cols=65 Identities=9% Similarity=0.015 Sum_probs=44.1
Q ss_pred CCEEEEEECCCcEEEEcC-CCceeEEEecCC--C--cEEE-EEEcCCCeEEEEeC------CCcEEEEc--CCceeEEEe
Q 008510 3 GVGIISASHDCTIRLWAL-TGQVLMEMVGHT--A--IVYS-IDSHASGLIVSGSE------DRFAKIWK--DGVCVQSIE 68 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~--~--~V~~-v~~~p~g~l~s~s~------D~tvriWd--~~~~~~~l~ 68 (563)
+..++.++.|+.+..+|. +|+.+.+..... . .+.+ -.+. ++.++.++. |+.|..+| +|+.+..+.
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 193 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA-KDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAF 193 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEE-CCEEEEEecCCccCCCCEEEEEECCCCcEEEEEc
Confidence 567788889999999999 899887765321 0 1211 1111 454444443 78999999 889888776
No 262
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=94.22 E-value=1.1 Score=42.18 Aligned_cols=118 Identities=12% Similarity=0.038 Sum_probs=75.5
Q ss_pred ceeEEEecCC--CcEEEEEEcCCCeEEEEeCCC--cEEEEc--CCceeEEEecCCcEEEEEEccCCc-E-EEEeCCCcEE
Q 008510 23 QVLMEMVGHT--AIVYSIDSHASGLIVSGSEDR--FAKIWK--DGVCVQSIEHPGCVWDAKFLENGD-I-VTACSDGVTR 94 (563)
Q Consensus 23 ~~i~~l~gH~--~~V~~v~~~p~g~l~s~s~D~--tvriWd--~~~~~~~l~h~~~V~~v~~~p~g~-i-~sgs~Dg~Ir 94 (563)
+.++++ .|. .+...+.|+++-.+.|+|.+| +|+..| +++.++.+..+.........+.++ + +..-.++.+.
T Consensus 10 ~v~~~~-phd~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~ 88 (243)
T 3mbr_X 10 RVVKRY-PHDTTAFTEGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGF 88 (243)
T ss_dssp EEEEEE-ECCTTCCEEEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEE
T ss_pred EEEEEc-CCCCccccccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEE
Confidence 456666 565 567899998732677878764 899999 899999888555444444444444 4 4555689999
Q ss_pred EEEcCCCceeceeeecccccc---cceeEEeeccCCceEEEeCCCCceee
Q 008510 95 IWTVHSDKVADSLELEAYASE---LSQYKLCRKKVGGLKLEDLPGLEALQ 141 (563)
Q Consensus 95 vwd~~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~~i~~~d~~~~~~l~ 141 (563)
+||..+.+...........-. -....+.....+.|.++|..+.+.+.
T Consensus 89 v~D~~tl~~~~ti~~~~~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~ 138 (243)
T 3mbr_X 89 VYDLATLTPRARFRYPGEGWALTSDDSHLYMSDGTAVIRKLDPDTLQQVG 138 (243)
T ss_dssp EEETTTTEEEEEEECSSCCCEEEECSSCEEEECSSSEEEEECTTTCCEEE
T ss_pred EEECCcCcEEEEEeCCCCceEEeeCCCEEEEECCCCeEEEEeCCCCeEEE
Confidence 999999886654443321100 11223333346678888877665543
No 263
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=94.17 E-value=1.8 Score=41.12 Aligned_cols=117 Identities=10% Similarity=0.127 Sum_probs=74.9
Q ss_pred ceeEEEecCC--CcEEEEEEcCCCeEEEEeCCCcEEEEc--CCceeEEEecCCcEEEEEEccCCc-E-EEEeCCCcEEEE
Q 008510 23 QVLMEMVGHT--AIVYSIDSHASGLIVSGSEDRFAKIWK--DGVCVQSIEHPGCVWDAKFLENGD-I-VTACSDGVTRIW 96 (563)
Q Consensus 23 ~~i~~l~gH~--~~V~~v~~~p~g~l~s~s~D~tvriWd--~~~~~~~l~h~~~V~~v~~~p~g~-i-~sgs~Dg~Irvw 96 (563)
+.++++ .|. .+...+.|+.+-.+++.+.++.|+++| +++.++.+ .+.........++|+ + +..-.++.+.+|
T Consensus 44 ~Vv~~~-phd~~~ftqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~ 121 (268)
T 3nok_A 44 HIIREY-PHATNAFTQGLVFHQGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTW 121 (268)
T ss_dssp EEEEEE-ECCTTCCEEEEEEETTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEE
T ss_pred EEEEEE-cCCCccccceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEE
Confidence 455666 344 567888887432788899999999999 88888887 555554433444454 4 445568999999
Q ss_pred EcCCCceeceeeecccccc---cceeEEeeccCCceEEEeCCCCceee
Q 008510 97 TVHSDKVADSLELEAYASE---LSQYKLCRKKVGGLKLEDLPGLEALQ 141 (563)
Q Consensus 97 d~~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~~i~~~d~~~~~~l~ 141 (563)
|..+.+...........-. -....+.....+.|.++|..+.+.+.
T Consensus 122 D~~Tl~~~~ti~~~~eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~ 169 (268)
T 3nok_A 122 SGMPPQRERTTRYSGEGWGLCYWNGKLVRSDGGTMLTFHEPDGFALVG 169 (268)
T ss_dssp ETTTTEEEEEEECSSCCCCEEEETTEEEEECSSSEEEEECTTTCCEEE
T ss_pred ECCcCcEEEEEeCCCceeEEecCCCEEEEECCCCEEEEEcCCCCeEEE
Confidence 9999986655443321101 11233333446778888877665544
No 264
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=93.86 E-value=1.6 Score=46.95 Aligned_cols=102 Identities=12% Similarity=0.107 Sum_probs=68.0
Q ss_pred CCEEEEEEC-CCcEEEEcC--CCceeEEEecCCCc-----------EEEEEEcCCC-e----EEEEeCCCcEEEEc--CC
Q 008510 3 GVGIISASH-DCTIRLWAL--TGQVLMEMVGHTAI-----------VYSIDSHASG-L----IVSGSEDRFAKIWK--DG 61 (563)
Q Consensus 3 g~~l~s~s~-DgtIrlWd~--~g~~i~~l~gH~~~-----------V~~v~~~p~g-~----l~s~s~D~tvriWd--~~ 61 (563)
+..++.++. ++.|.-+|. +|+.+.++...... ...+++.|.+ . ++.++.|+.+.-+| +|
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG 141 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence 456777777 889999998 79988887643221 1234554433 5 88899999999999 88
Q ss_pred ceeEEEecCC-----cEEEEEEccCCcEEEEeC------CCcEEEEEcCCCcee
Q 008510 62 VCVQSIEHPG-----CVWDAKFLENGDIVTACS------DGVTRIWTVHSDKVA 104 (563)
Q Consensus 62 ~~~~~l~h~~-----~V~~v~~~p~g~i~sgs~------Dg~Irvwd~~~~~~~ 104 (563)
+.+....... .+.+--..-+|.++.++. +|.|+-||.++++..
T Consensus 142 ~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~ 195 (599)
T 1w6s_A 142 ETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQV 195 (599)
T ss_dssp CEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEE
T ss_pred CEEEeecCCCCCccceeecCCEEECCEEEEEecccccCCCCeEEEEECCCCcEE
Confidence 8887765221 222111112566666653 899999999999843
No 265
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=93.55 E-value=1.9 Score=44.24 Aligned_cols=98 Identities=9% Similarity=0.087 Sum_probs=61.3
Q ss_pred EEEEEECCCcEEEEcCCCceeEEEecCCCcEEEEEEcCCC-eEEEEeC-CC----cEEEEc-CCcee--EEEecCCcEEE
Q 008510 5 GIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVSGSE-DR----FAKIWK-DGVCV--QSIEHPGCVWD 75 (563)
Q Consensus 5 ~l~s~s~DgtIrlWd~~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~-D~----tvriWd-~~~~~--~~l~h~~~V~~ 75 (563)
.|..+...+.|+.+|+++..+..+.......+.++|+++| .+..+.. ++ .+...+ .+... ..+..-...+.
T Consensus 151 ~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~~~~~l~~~~~p~g 230 (430)
T 3tc9_A 151 HLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFKVITELTKGQNCNG 230 (430)
T ss_dssp EEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTSCSEEEEEECSSCCC
T ss_pred eEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCceeeeeeeccCCCceE
Confidence 4444544478888998665566665556678999999998 4554443 22 233333 33322 33332234567
Q ss_pred EEEcc-CCcE-EEEeCCCcEEEEEcCCCc
Q 008510 76 AKFLE-NGDI-VTACSDGVTRIWTVHSDK 102 (563)
Q Consensus 76 v~~~p-~g~i-~sgs~Dg~Irvwd~~~~~ 102 (563)
+++.| +|.| ++-..++.|+.|+...+.
T Consensus 231 iavdp~~g~lyv~d~~~~~V~~~~~~~~~ 259 (430)
T 3tc9_A 231 AETHPINGELYFNSWNAGQVFRYDFTTQE 259 (430)
T ss_dssp EEECTTTCCEEEEETTTTEEEEEETTTTE
T ss_pred EEEeCCCCEEEEEECCCCEEEEEECCCCc
Confidence 78999 7775 455567889999988664
No 266
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=93.30 E-value=0.54 Score=50.55 Aligned_cols=51 Identities=16% Similarity=0.188 Sum_probs=31.5
Q ss_pred CCcEEEEc--CCceeEEEecCCcEEEEEEc-cCCcEEEEeCCCcEEEEEcCCCc
Q 008510 52 DRFAKIWK--DGVCVQSIEHPGCVWDAKFL-ENGDIVTACSDGVTRIWTVHSDK 102 (563)
Q Consensus 52 D~tvriWd--~~~~~~~l~h~~~V~~v~~~-p~g~i~sgs~Dg~Irvwd~~~~~ 102 (563)
++.+..|| +++.+....+...++.-... .+|.+..|+.||.++.||.++++
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~ 518 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGK 518 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred cceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECCCCcEEEEECCCCC
Confidence 56777777 67776666533333321111 23446667788888888888877
No 267
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=92.93 E-value=0.24 Score=54.30 Aligned_cols=53 Identities=8% Similarity=0.170 Sum_probs=39.2
Q ss_pred CCcEEEEc--CCceeEEEecCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCcee
Q 008510 52 DRFAKIWK--DGVCVQSIEHPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVA 104 (563)
Q Consensus 52 D~tvriWd--~~~~~~~l~h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~ 104 (563)
++.|..|| +++.+....+...++...+...|. ++.|+.|+.++.||.++++..
T Consensus 437 ~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l 492 (668)
T 1kv9_A 437 SGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEAL 492 (668)
T ss_dssp EEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred cceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEEECCcccchhhhhhcChhh
Confidence 47899999 888887777544455444444444 788899999999999998843
No 268
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=92.87 E-value=0.57 Score=49.96 Aligned_cols=90 Identities=10% Similarity=-0.018 Sum_probs=63.1
Q ss_pred CCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCC------------------------------------
Q 008510 12 DCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDR------------------------------------ 53 (563)
Q Consensus 12 DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~------------------------------------ 53 (563)
++++.+.|. +.+.+.++.--. .-..++++|+| .+++++++.
T Consensus 174 ~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~ 252 (595)
T 1fwx_A 174 VNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQE 252 (595)
T ss_dssp EEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEE
T ss_pred CceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeE
Confidence 567888998 677777765211 23567789998 666666443
Q ss_pred --cEEEEc--C--Cce-eEEEecCCcEEEEEEccCCc--EEEEeCCCcEEEEEcCCCc
Q 008510 54 --FAKIWK--D--GVC-VQSIEHPGCVWDAKFLENGD--IVTACSDGVTRIWTVHSDK 102 (563)
Q Consensus 54 --tvriWd--~--~~~-~~~l~h~~~V~~v~~~p~g~--i~sgs~Dg~Irvwd~~~~~ 102 (563)
.|.|.| + ++. +..+.-+....++.++|||+ ++++..+.+|.++|+.+.+
T Consensus 253 i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~ 310 (595)
T 1fwx_A 253 LNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFD 310 (595)
T ss_dssp ETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHH
T ss_pred ECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccc
Confidence 466666 3 334 56666555778899999999 5667778999999998653
No 269
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=92.64 E-value=12 Score=41.42 Aligned_cols=97 Identities=9% Similarity=0.047 Sum_probs=68.8
Q ss_pred EEEEECCCcEEEEcCCCceeEEEec--------CCCcEEEEEEcCCCeEEEEeCCCcEEEEc-CCceeEEEec-------
Q 008510 6 IISASHDCTIRLWALTGQVLMEMVG--------HTAIVYSIDSHASGLIVSGSEDRFAKIWK-DGVCVQSIEH------- 69 (563)
Q Consensus 6 l~s~s~DgtIrlWd~~g~~i~~l~g--------H~~~V~~v~~~p~g~l~s~s~D~tvriWd-~~~~~~~l~h------- 69 (563)
+..|..+ -|.+|+........+.. ....|+++...++|.+..|+.++-|..|+ .......+.+
T Consensus 276 lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l 354 (795)
T 4a2l_A 276 LWIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSL 354 (795)
T ss_dssp EEEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEEEEESSSCEEEECGGGGSSEEECCCTTSSSC
T ss_pred EEEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEEEEECCCCeEEeCCCcccceEEcCCCCCCCC
Confidence 4455555 48888884333333321 23579999999988777788888899998 4343444432
Q ss_pred -CCcEEEEEEccCCcEEEEeCCCcEEEEEcCCCce
Q 008510 70 -PGCVWDAKFLENGDIVTACSDGVTRIWTVHSDKV 103 (563)
Q Consensus 70 -~~~V~~v~~~p~g~i~sgs~Dg~Irvwd~~~~~~ 103 (563)
...|+++...++|.+..|+.++-|..||..+++.
T Consensus 355 ~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~ 389 (795)
T 4a2l_A 355 SDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRF 389 (795)
T ss_dssp SCSSEEEEEECTTSCEEEEESSSCEEEECTTTCCE
T ss_pred CCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcE
Confidence 2369999999999998899988899999887653
No 270
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=92.45 E-value=5.8 Score=38.11 Aligned_cols=80 Identities=19% Similarity=0.197 Sum_probs=56.2
Q ss_pred ceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc-CCceeEEEecCCcEEEEEEccCCcEEEEe--CCC-cEEEEE
Q 008510 23 QVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-DGVCVQSIEHPGCVWDAKFLENGDIVTAC--SDG-VTRIWT 97 (563)
Q Consensus 23 ~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd-~~~~~~~l~h~~~V~~v~~~p~g~i~sgs--~Dg-~Irvwd 97 (563)
+.+..+..+ ....+++|+++| .+++-..++.|..|| .++....+........+++.++|+++.+. .++ .|..+|
T Consensus 23 ~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~~~~~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d 101 (306)
T 2p4o_A 23 KIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLV 101 (306)
T ss_dssp EEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEE
T ss_pred eEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCCceEEEEeCCCCceeEEEcCCCcEEEEeccCCcceEEEEc
Confidence 445555433 567899999998 666666788999999 77665555556689999999999954443 222 466677
Q ss_pred cCCCce
Q 008510 98 VHSDKV 103 (563)
Q Consensus 98 ~~~~~~ 103 (563)
..+++.
T Consensus 102 ~~~g~~ 107 (306)
T 2p4o_A 102 KSDGTV 107 (306)
T ss_dssp CTTSCE
T ss_pred CCCCeE
Confidence 777653
No 271
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=92.05 E-value=0.81 Score=48.18 Aligned_cols=137 Identities=7% Similarity=-0.015 Sum_probs=82.3
Q ss_pred CcchHHHHHHHHHhhcCCCcc-HHHHHhhHHHHHHHhhhhccCCChhHHHHHHHHHHHHHhhhhhcC-CchhhhHHHHHH
Q 008510 418 LPANLLTGIRAVTNLFKNSSW-YSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKK-DEEGQSHVLSAA 495 (563)
Q Consensus 418 ~~~~~ll~lR~l~N~f~~~~~-~~~~~~~~~~il~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~-~~~~~~~l~~~~ 495 (563)
.+..+.-++++|+|+...... .+.+.. ..++..+...+...+..+|..++.++.|++....... ..-....++..+
T Consensus 342 ~~~v~~~A~~~L~nl~~~~~~~~~~~~~--~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L 419 (528)
T 4b8j_A 342 KKSIKKEACWTISNITAGNKDQIQAVIN--AGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPL 419 (528)
T ss_dssp CHHHHHHHHHHHHHHHTSCHHHHHHHHH--TTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHHHHHHCCCHHHHHHHHH--CCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHH
Confidence 456678899999999875432 222322 1233344444444577899999999999986521110 000011345566
Q ss_pred HHhhhhcccChhHHHHHHHHHhhhhchh-H-----------HHHHhhhcChHHHHHHHhhcCChhHHHHHHHHHH
Q 008510 496 LEIAEEESIEVDSKYRALVAIGTLMLEG-L-----------VKKIALDFDVGNIARVAKASKETKIAEVGADIEL 558 (563)
Q Consensus 496 ~~~l~~~~~~~Ea~~R~l~AlG~l~~~~-~-----------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ei~~ 558 (563)
+.++. ..+++.....+.+|++|+..+ . ........+.-+.+..+....+..+.+.+..|+.
T Consensus 420 ~~lL~--~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~ 492 (528)
T 4b8j_A 420 CDLLI--CPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILE 492 (528)
T ss_dssp HHGGG--CSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHH
T ss_pred HHHHc--CCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 67774 368899999999999998722 1 2333333344344555555566677777777664
No 272
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=91.99 E-value=2.1 Score=41.45 Aligned_cols=100 Identities=10% Similarity=0.071 Sum_probs=66.5
Q ss_pred cchHHHHHHHHHhhcCCCcc-HHHHHhhHHHHHHHhhhhccCCChhHHHHHHHHHHHHHhhhhhcCCchhhhHHHHHHHH
Q 008510 419 PANLLTGIRAVTNLFKNSSW-YSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAALE 497 (563)
Q Consensus 419 ~~~~ll~lR~l~N~f~~~~~-~~~~~~~~~~il~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~~~~~~~~l~~~~~~ 497 (563)
+..+--++.+|+|+-.+... .+.+... ..+..+...+.+.+..+|..++.++.|++.........-....++..+++
T Consensus 139 ~~v~~~A~~ALsnl~~~~~~~~~~~~~~--ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~ 216 (296)
T 1xqr_A 139 DTVRVKALFAISCLVREQEAGLLQFLRL--DGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVA 216 (296)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHT--THHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHC--CCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHH
Confidence 44567789999999876544 3344431 23445555555678899999999999998652111111112235566677
Q ss_pred hhhhcccChhHHHHHHHHHhhhhch
Q 008510 498 IAEEESIEVDSKYRALVAIGTLMLE 522 (563)
Q Consensus 498 ~l~~~~~~~Ea~~R~l~AlG~l~~~ 522 (563)
++.. .|.+...-.+-||++|+..
T Consensus 217 LL~~--~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 217 LVRT--EHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHTS--CCSTHHHHHHHHHHHHHTT
T ss_pred HHcC--CChhHHHHHHHHHHHHHhC
Confidence 7753 5789999999999999983
No 273
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=91.93 E-value=0.94 Score=48.78 Aligned_cols=26 Identities=4% Similarity=-0.018 Sum_probs=21.5
Q ss_pred CEEEEEECCCcEEEEcC-CCceeEEEe
Q 008510 4 VGIISASHDCTIRLWAL-TGQVLMEMV 29 (563)
Q Consensus 4 ~~l~s~s~DgtIrlWd~-~g~~i~~l~ 29 (563)
..++.++.+|.+.+.|. +|+.+....
T Consensus 324 ~~v~~~~~~G~l~~lD~~tG~~lw~~~ 350 (599)
T 1w6s_A 324 KLLTHPDRNGIVYTLDRTDGALVSANK 350 (599)
T ss_dssp EEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred EEEEEECCCcEEEEEECCCCCEeeccc
Confidence 46777889999999999 899887654
No 274
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=91.68 E-value=0.92 Score=50.35 Aligned_cols=97 Identities=9% Similarity=-0.049 Sum_probs=56.6
Q ss_pred CCCEEEEEEC-C----CcEEEEcC-CC-ceeE-EEecCCCcEEEEEEcCCC-eEEEEeCCC-----cEEEEc--CCce--
Q 008510 2 PGVGIISASH-D----CTIRLWAL-TG-QVLM-EMVGHTAIVYSIDSHASG-LIVSGSEDR-----FAKIWK--DGVC-- 63 (563)
Q Consensus 2 ~g~~l~s~s~-D----gtIrlWd~-~g-~~i~-~l~gH~~~V~~v~~~p~g-~l~s~s~D~-----tvriWd--~~~~-- 63 (563)
||++++-+.. + .+|+++|+ +| +.+. .+.+ ...+++|+||| .|+....|. .|..|+ ++..
T Consensus 185 DG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~---~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~ 261 (751)
T 2xe4_A 185 EHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSG---TNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSED 261 (751)
T ss_dssp TTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEE---ECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGC
T ss_pred CCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccC---ceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhc
Confidence 5676664433 2 25999999 66 5321 1211 12467899998 655555552 455666 3321
Q ss_pred eEEEe--cCCcEEEEEEccCCc-EEEEeC---CCcEEEEEcCCC
Q 008510 64 VQSIE--HPGCVWDAKFLENGD-IVTACS---DGVTRIWTVHSD 101 (563)
Q Consensus 64 ~~~l~--h~~~V~~v~~~p~g~-i~sgs~---Dg~Irvwd~~~~ 101 (563)
...+. .......+.|+|||+ |+..+. ...|+++|+.++
T Consensus 262 ~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~ 305 (751)
T 2xe4_A 262 VCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG 305 (751)
T ss_dssp EEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC
T ss_pred EEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence 22333 334567889999998 554432 346788888765
No 275
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=91.61 E-value=11 Score=41.74 Aligned_cols=99 Identities=11% Similarity=0.054 Sum_probs=70.9
Q ss_pred EEEEEECCCcEEEEcCCCceeEEEec-------CCCcEEEEEEcCCCeEEEEeCCCcEEEEc-CCceeEEEec-------
Q 008510 5 GIISASHDCTIRLWALTGQVLMEMVG-------HTAIVYSIDSHASGLIVSGSEDRFAKIWK-DGVCVQSIEH------- 69 (563)
Q Consensus 5 ~l~s~s~DgtIrlWd~~g~~i~~l~g-------H~~~V~~v~~~p~g~l~s~s~D~tvriWd-~~~~~~~l~h------- 69 (563)
.+..|+.++-|..|+........+.. ....|.++...++|.+..|..++-+..|+ .......+.+
T Consensus 322 ~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~ 401 (795)
T 4a2l_A 322 GMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESAR 401 (795)
T ss_dssp CEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------
T ss_pred CEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCccc
Confidence 35667777778888873322233321 24569999998888777788887899999 4333333331
Q ss_pred ---CCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCce
Q 008510 70 ---PGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKV 103 (563)
Q Consensus 70 ---~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~ 103 (563)
...|+++...++|+ +..|+.++-+..||..+++.
T Consensus 402 ~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~ 439 (795)
T 4a2l_A 402 GIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQV 439 (795)
T ss_dssp CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCE
T ss_pred CCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcE
Confidence 24799999999999 99999988899999988763
No 276
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=90.96 E-value=4 Score=39.48 Aligned_cols=136 Identities=7% Similarity=-0.043 Sum_probs=80.5
Q ss_pred cchhcHHHHhhcCCCchhhhhhcccchhhHHHHHHHhhcCCCCCcchHHHHHHHHHhhcCCCc-cHHHHHhh--HHHHHH
Q 008510 375 FPVIDILRMTILHPDGASLLLKHVENQNDVLMEMIEKVSSNPTLPANLLTGIRAVTNLFKNSS-WYSWLQKN--RSEILD 451 (563)
Q Consensus 375 fP~lDL~Rl~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~lR~l~N~f~~~~-~~~~~~~~--~~~il~ 451 (563)
..++|.+.-++-+......+.+ .+.+..++.....+ +.+..+.-++++++|+-.+.. .++.+... ...++.
T Consensus 58 ~~Al~~L~~lv~~~dna~~~~~-----~G~l~~Lv~~lL~s-~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~ 131 (296)
T 1xqr_A 58 EGALELLADLCENMDNAADFCQ-----LSGMHLLVGRYLEA-GAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLR 131 (296)
T ss_dssp HHHHHHHHHHHTSHHHHHHHHH-----TTHHHHHHHTTTTC-SSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHhChhhHHHHHH-----cCCHHHHHHHHHcC-CCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHH
Confidence 3567777766665554333331 12233444412332 345677899999999988755 44455432 444444
Q ss_pred HhhhhccCCChhHHHHHHHHHHHHHhhhhhcCCchhhhHHHHHHHHhhhhcccChhHHHHHHHHHhhhhc
Q 008510 452 AFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAALEIAEEESIEVDSKYRALVAIGTLML 521 (563)
Q Consensus 452 ~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~Ea~~R~l~AlG~l~~ 521 (563)
.+.. .++..+|..++..+-|++.-.......-.....+..++.++. ..|.+...+.+.||++|..
T Consensus 132 LL~~---~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~--~~d~~v~~~A~~aLs~L~~ 196 (296)
T 1xqr_A 132 LLDR---DACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQ--QQVQKLKVKSAFLLQNLLV 196 (296)
T ss_dssp HHHH---CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH--SSCHHHHHHHHHHHHHHHH
T ss_pred HHcc---CCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHc--CCCHHHHHHHHHHHHHHHh
Confidence 4432 246788988989998986432111100011234556667774 3588999999999999987
No 277
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=90.79 E-value=6.4 Score=38.01 Aligned_cols=98 Identities=5% Similarity=-0.001 Sum_probs=59.5
Q ss_pred CEEEEEECCCcEEEEcCCCceeEEEec-----CCCcEEEEEEcC-CC-eEEEEeC-----------------CCcEEEEc
Q 008510 4 VGIISASHDCTIRLWALTGQVLMEMVG-----HTAIVYSIDSHA-SG-LIVSGSE-----------------DRFAKIWK 59 (563)
Q Consensus 4 ~~l~s~s~DgtIrlWd~~g~~i~~l~g-----H~~~V~~v~~~p-~g-~l~s~s~-----------------D~tvriWd 59 (563)
..|+.+...+.|..+|..+..+..+.. .......+++.+ +| ..++-.. ++.|..||
T Consensus 92 g~l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d 171 (322)
T 2fp8_A 92 NQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYD 171 (322)
T ss_dssp TEEEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEE
T ss_pred CcEEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEe
Confidence 445556555558888885433333321 123578899999 88 5454322 35677788
Q ss_pred -CCceeEEEe-cCCcEEEEEEccCCc-EEEE-eCCCcEEEEEcCCC
Q 008510 60 -DGVCVQSIE-HPGCVWDAKFLENGD-IVTA-CSDGVTRIWTVHSD 101 (563)
Q Consensus 60 -~~~~~~~l~-h~~~V~~v~~~p~g~-i~sg-s~Dg~Irvwd~~~~ 101 (563)
....+..+. .-.....++++|+|+ +..+ ...+.|++|++...
T Consensus 172 ~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~ 217 (322)
T 2fp8_A 172 PSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGP 217 (322)
T ss_dssp TTTTEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSST
T ss_pred CCCCEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCC
Confidence 433333332 222445689999997 5444 55689999998753
No 278
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=90.68 E-value=2.7 Score=44.09 Aligned_cols=100 Identities=16% Similarity=0.165 Sum_probs=64.7
Q ss_pred cchHHHHHHHHHhhcCCCcc-HHHHHhhHHHHHHHhhhhccCC-ChhHHHHHHHHHHHHHhhhhhcCCchhhhHHHHHHH
Q 008510 419 PANLLTGIRAVTNLFKNSSW-YSWLQKNRSEILDAFSSCYSSS-NKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAAL 496 (563)
Q Consensus 419 ~~~~ll~lR~l~N~f~~~~~-~~~~~~~~~~il~~~~~~~~~~-~k~~~~a~atl~~N~s~~~~~~~~~~~~~~l~~~~~ 496 (563)
+..+.-++++|+|+..+... .+.+.. ..++..+...+.+. +..+|..++.++-|++.........-....++..++
T Consensus 300 ~~v~~~a~~~L~nl~~~~~~~~~~~~~--~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~ 377 (528)
T 4b8j_A 300 PSVLIPALRTVGNIVTGDDAQTQCIID--HQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLV 377 (528)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHT--TTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHH--hhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHH
Confidence 45678899999999986543 333332 23444455555556 788999999999999863111000000113355566
Q ss_pred HhhhhcccChhHHHHHHHHHhhhhch
Q 008510 497 EIAEEESIEVDSKYRALVAIGTLMLE 522 (563)
Q Consensus 497 ~~l~~~~~~~Ea~~R~l~AlG~l~~~ 522 (563)
+++.. .+++.....+.||++|...
T Consensus 378 ~lL~~--~~~~v~~~a~~aL~nl~~~ 401 (528)
T 4b8j_A 378 NLLQT--AEFDIKKEAAWAISNATSG 401 (528)
T ss_dssp HHHHH--SCHHHHHHHHHHHHHHHHH
T ss_pred HHHhc--CCHHHHHHHHHHHHHHHcC
Confidence 77743 4789999999999999874
No 279
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=90.42 E-value=8.1 Score=41.11 Aligned_cols=155 Identities=7% Similarity=-0.012 Sum_probs=93.6
Q ss_pred CCCEEEEEEC-CCcEEEEcC-CCceeEEEec-CCCcEEEEEE-c-CCC-eEEEEeC------------------CCcEEE
Q 008510 2 PGVGIISASH-DCTIRLWAL-TGQVLMEMVG-HTAIVYSIDS-H-ASG-LIVSGSE------------------DRFAKI 57 (563)
Q Consensus 2 ~g~~l~s~s~-DgtIrlWd~-~g~~i~~l~g-H~~~V~~v~~-~-p~g-~l~s~s~------------------D~tvri 57 (563)
||+++..+.. +..|.+-|+ +.++.+.+.- .......+++ . |++ +++.+++ ++.+.+
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtv 179 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA 179 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEE
Confidence 4666555554 556999999 7888875542 2245788887 4 888 6666643 356888
Q ss_pred Ec--CCceeEEEecCCcEEEEEEccCCc-EEEEeCCC---------------cEEEEEcCCCceeceeeeccccccccee
Q 008510 58 WK--DGVCVQSIEHPGCVWDAKFLENGD-IVTACSDG---------------VTRIWTVHSDKVADSLELEAYASELSQY 119 (563)
Q Consensus 58 Wd--~~~~~~~l~h~~~V~~v~~~p~g~-i~sgs~Dg---------------~Irvwd~~~~~~~~~~~~~~~~~~v~~~ 119 (563)
.| +.+.+.++.-.+.-..++++|+|+ +.+.+.+. .|.++|....... +. ....
T Consensus 180 ID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~----v~-----~Gk~ 250 (595)
T 1fwx_A 180 VDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKA----IA-----AGDY 250 (595)
T ss_dssp EETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHH----HH-----HTCS
T ss_pred EECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEe----cc-----CCCe
Confidence 88 666667766434556788999998 56666543 3556654322100 00 0000
Q ss_pred EEeeccCCceEEEeCCC--Cce-e----------eecccCCCeEEEEecCCCeEEEEEecccc
Q 008510 120 KLCRKKVGGLKLEDLPG--LEA-L----------QIPGTNAGQTKVVREGDNGVAYSWDMKEQ 169 (563)
Q Consensus 120 ~~~~~~~~~i~~~d~~~--~~~-l----------~~~g~~dg~~~l~~~~~~~~~~~wd~~~~ 169 (563)
.. .+.+.+.|..+ ... + .+..++||.+.++.+.....+.++|..+.
T Consensus 251 ~~----i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~ 309 (595)
T 1fwx_A 251 QE----LNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRF 309 (595)
T ss_dssp EE----ETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGH
T ss_pred eE----ECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECccc
Confidence 00 14566777665 222 1 11256889988888877677778887643
No 280
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=90.11 E-value=6.9 Score=37.55 Aligned_cols=99 Identities=14% Similarity=0.125 Sum_probs=61.1
Q ss_pred CCCEEEEEECCCcEEEEcCCCceeEEEecCCCcEEEEEEcCCC-eEEEEeC-CC-cEEEEc--CCceeEEEecC--CcEE
Q 008510 2 PGVGIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVSGSE-DR-FAKIWK--DGVCVQSIEHP--GCVW 74 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~-D~-tvriWd--~~~~~~~l~h~--~~V~ 74 (563)
+|+.+++...++.|..||.+++....+. ......++++.++| .+++... ++ .|..++ +++.......+ ....
T Consensus 42 ~g~lyv~d~~~~~I~~~d~~g~~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~ 120 (306)
T 2p4o_A 42 DGTIFVTNHEVGEIVSITPDGNQQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLN 120 (306)
T ss_dssp TSCEEEEETTTTEEEEECTTCCEEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEE
T ss_pred CCCEEEEeCCCCeEEEECCCCceEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccC
Confidence 4666666667889999998766544443 34568899999999 5444433 33 355555 55543322222 2345
Q ss_pred EEEEccCCc-EEEEeCCCcEEEEEcCCC
Q 008510 75 DAKFLENGD-IVTACSDGVTRIWTVHSD 101 (563)
Q Consensus 75 ~v~~~p~g~-i~sgs~Dg~Irvwd~~~~ 101 (563)
.++..+++. +++-..++.|.++|...+
T Consensus 121 g~~~~~~~~~~v~d~~~g~i~~~d~~~~ 148 (306)
T 2p4o_A 121 GITPLSDTQYLTADSYRGAIWLIDVVQP 148 (306)
T ss_dssp EEEESSSSEEEEEETTTTEEEEEETTTT
T ss_pred cccccCCCcEEEEECCCCeEEEEeCCCC
Confidence 555566666 444445888999998764
No 281
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=89.84 E-value=4 Score=39.89 Aligned_cols=71 Identities=11% Similarity=0.151 Sum_probs=48.8
Q ss_pred ecCCCcEEEEEEcCCCeEEEEeCCCcE-EEEcC-CceeEEEe--cCCcEEEEEEccCCcEEEEeCCCcEEEEEcC
Q 008510 29 VGHTAIVYSIDSHASGLIVSGSEDRFA-KIWKD-GVCVQSIE--HPGCVWDAKFLENGDIVTACSDGVTRIWTVH 99 (563)
Q Consensus 29 ~gH~~~V~~v~~~p~g~l~s~s~D~tv-riWd~-~~~~~~l~--h~~~V~~v~~~p~g~i~sgs~Dg~Irvwd~~ 99 (563)
.++...++++.+.|++.++..+.++.+ +-+|. +..-+.+. .+..+..+.+.+++++..++.+|.+++.+.+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D 233 (327)
T 2xbg_A 159 QEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPD 233 (327)
T ss_dssp CSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTSCEEEEETTTEEEEEETT
T ss_pred cCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECCCCCCCccceeEECCCCCEEEEeCCceEEEecCC
Confidence 456678999999998844444455554 44443 55544444 4558999999999887777888988877533
No 282
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=89.55 E-value=2.7 Score=44.10 Aligned_cols=136 Identities=7% Similarity=-0.016 Sum_probs=85.2
Q ss_pred cchHHHHHHHHHhhcCCCccHH-HHHhhHHHHHHHhhhhccCCChhHHHHHHHHHHHHHhhhhhcCCc-hhhhHHHHHHH
Q 008510 419 PANLLTGIRAVTNLFKNSSWYS-WLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDE-EGQSHVLSAAL 496 (563)
Q Consensus 419 ~~~~ll~lR~l~N~f~~~~~~~-~~~~~~~~il~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~~~-~~~~~l~~~~~ 496 (563)
+..+--++.+|+|+..+..... .+.. ..++..+...+.+.+..+|..++..+.|++......... -.....+..++
T Consensus 330 ~~v~~~A~~aL~nl~a~~~~~~~~v~~--~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~ 407 (510)
T 3ul1_B 330 TNIQKEATWTMSNITAGRQDQIQQVVN--HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLM 407 (510)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHH--TTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHh--cCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHH
Confidence 4556889999999998765433 3332 234555556666678889999999999998642111000 00112345556
Q ss_pred HhhhhcccChhHHHHHHHHHhhhhchh-------HHHHHhhhcChHHHHHHHhhcCChhHHHHHHHHHH
Q 008510 497 EIAEEESIEVDSKYRALVAIGTLMLEG-------LVKKIALDFDVGNIARVAKASKETKIAEVGADIEL 558 (563)
Q Consensus 497 ~~l~~~~~~~Ea~~R~l~AlG~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ei~~ 558 (563)
+++. ..|++.+...|-||.+++..+ ....+-...|.-+.++.+...++..|.+-+.+|++
T Consensus 408 ~LL~--~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie 474 (510)
T 3ul1_B 408 NLLS--AKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIE 474 (510)
T ss_dssp HGGG--CSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHH
T ss_pred HHhc--CCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 7774 468899999999999998611 22223333444445566665666778887777754
No 283
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=89.55 E-value=2.2 Score=46.36 Aligned_cols=68 Identities=19% Similarity=0.235 Sum_probs=44.7
Q ss_pred EEEEcC-CC-eEEEEeCCC-----------cEEEEc--CCc--eeEEEe--cCCcEEEEEEccCCc-EEEEeC-CCcEEE
Q 008510 37 SIDSHA-SG-LIVSGSEDR-----------FAKIWK--DGV--CVQSIE--HPGCVWDAKFLENGD-IVTACS-DGVTRI 95 (563)
Q Consensus 37 ~v~~~p-~g-~l~s~s~D~-----------tvriWd--~~~--~~~~l~--h~~~V~~v~~~p~g~-i~sgs~-Dg~Irv 95 (563)
++++.+ +| .++.||.+. .+.+|| +++ .+..+. +.....++++.++|+ ++.|+. ++.+++
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 556777 77 777777653 578898 333 233343 222344578888999 677774 568999
Q ss_pred EEcCCCcee
Q 008510 96 WTVHSDKVA 104 (563)
Q Consensus 96 wd~~~~~~~ 104 (563)
||..+.+..
T Consensus 270 yd~~t~~W~ 278 (656)
T 1k3i_A 270 YDSSSDSWI 278 (656)
T ss_dssp EEGGGTEEE
T ss_pred ecCcCCcee
Confidence 999877643
No 284
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=89.48 E-value=1.6 Score=45.92 Aligned_cols=100 Identities=12% Similarity=0.095 Sum_probs=65.5
Q ss_pred CcchHHHHHHHHHhhcCCCccHH-HHHhhHHHHHHHhhhhccCCChhHHHHHHHHHHHHHhhhhhcCCchhhhHHHHHHH
Q 008510 418 LPANLLTGIRAVTNLFKNSSWYS-WLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAAL 496 (563)
Q Consensus 418 ~~~~~ll~lR~l~N~f~~~~~~~-~~~~~~~~il~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~~~~~~~~l~~~~~ 496 (563)
.+..+.-++|++.|+........ .+.. ..++..+...+.+.+..+|..++..+.|++.........-....++..++
T Consensus 287 ~~~v~~~al~aL~nl~~~~~~~~~~i~~--~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv 364 (510)
T 3ul1_B 287 ELPIVTPALRAIGNIVTGTDEQTQKVID--AGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLV 364 (510)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHH--TTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHH
T ss_pred ChhhhhHHHHHHHHhhcCCHHHHHHHhh--ccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHH
Confidence 34566788999999987765433 2222 22344555667778899999999999999864322111111123455566
Q ss_pred HhhhhcccChhHHHHHHHHHhhhhc
Q 008510 497 EIAEEESIEVDSKYRALVAIGTLML 521 (563)
Q Consensus 497 ~~l~~~~~~~Ea~~R~l~AlG~l~~ 521 (563)
+.+. ..+.+...-...||+||..
T Consensus 365 ~lL~--~~~~~v~~~Aa~aL~Nl~~ 387 (510)
T 3ul1_B 365 GVLS--KADFKTQKEAAWAITNYTS 387 (510)
T ss_dssp HHHH--SSCHHHHHHHHHHHHHHHH
T ss_pred HHHc--CCCHHHHHHHHHHHHHHHc
Confidence 7674 3577888889999999987
No 285
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=89.27 E-value=2 Score=45.29 Aligned_cols=99 Identities=12% Similarity=0.102 Sum_probs=64.8
Q ss_pred cchHHHHHHHHHhhcCCCccHH-HHHhhHHHHHHHhhhhccCCChhHHHHHHHHHHHHHhhhhhcCCchhhhHHHHHHHH
Q 008510 419 PANLLTGIRAVTNLFKNSSWYS-WLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAALE 497 (563)
Q Consensus 419 ~~~~ll~lR~l~N~f~~~~~~~-~~~~~~~~il~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~~~~~~~~l~~~~~~ 497 (563)
+..+.-++|++.|+..+..... .+.. ..++..+...+.+.+..+|..++..+.|++.........-....++..++.
T Consensus 307 ~~v~~~a~~aL~nl~~~~~~~~~~i~~--~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~ 384 (529)
T 3tpo_A 307 LPIVTPALRAIGNIVTGTDEQTQKVID--AGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVG 384 (529)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHH--TTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHccchHHHHHHhh--cccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHH
Confidence 4556778999999987765433 2222 223444555566788999999999999998642221111111224555566
Q ss_pred hhhhcccChhHHHHHHHHHhhhhc
Q 008510 498 IAEEESIEVDSKYRALVAIGTLML 521 (563)
Q Consensus 498 ~l~~~~~~~Ea~~R~l~AlG~l~~ 521 (563)
.+. ..+.+...-...||++|..
T Consensus 385 lL~--~~~~~v~~~A~~aL~nl~~ 406 (529)
T 3tpo_A 385 VLS--KADFKTQKAAAWAITNYTS 406 (529)
T ss_dssp HHH--SSCHHHHHHHHHHHHHHHH
T ss_pred Hhc--CCCHHHHHHHHHHHHHHHc
Confidence 664 4577888889999999987
No 286
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=88.87 E-value=31 Score=37.90 Aligned_cols=98 Identities=12% Similarity=-0.037 Sum_probs=65.6
Q ss_pred EEEEEECCCcEEEEcC-CCceeEEEe--------------cCCCcEEEEEEcCCCeEEEEeCCCcEEEEc-CCceeEEEe
Q 008510 5 GIISASHDCTIRLWAL-TGQVLMEMV--------------GHTAIVYSIDSHASGLIVSGSEDRFAKIWK-DGVCVQSIE 68 (563)
Q Consensus 5 ~l~s~s~DgtIrlWd~-~g~~i~~l~--------------gH~~~V~~v~~~p~g~l~s~s~D~tvriWd-~~~~~~~l~ 68 (563)
.+..|...+-|.+++. +++...... .+...|+++...++|.+..|..++-|..++ .......+.
T Consensus 270 ~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~ 349 (781)
T 3v9f_A 270 KLWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIWIGTWGGGINFISNAPPTFHTWS 349 (781)
T ss_dssp EEEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCCEEEEEBSSCEEEECSSCCSCEEEC
T ss_pred CEEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCEEEEecCCeEEEeCCCCCcceeec
Confidence 4555666455778887 333221111 134579999998888777788788888898 444444442
Q ss_pred c-----------CCcEEEEEEccCCcEEEEeCCCcEEEEEcCCCc
Q 008510 69 H-----------PGCVWDAKFLENGDIVTACSDGVTRIWTVHSDK 102 (563)
Q Consensus 69 h-----------~~~V~~v~~~p~g~i~sgs~Dg~Irvwd~~~~~ 102 (563)
+ ...|+++...++|.+..|+.++-+..||..+++
T Consensus 350 ~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~ 394 (781)
T 3v9f_A 350 YSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRV 394 (781)
T ss_dssp ----CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEE
T ss_pred cCccccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCe
Confidence 1 246999999988998888877788999987654
No 287
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=88.80 E-value=24 Score=38.82 Aligned_cols=98 Identities=14% Similarity=-0.063 Sum_probs=65.7
Q ss_pred EEEEEECCCcEEEEcCCCceeEEE----ecCCCcEEEEEEcCCCeEEEEeCCCcEEEEc-CCceeEEEec----CCcEEE
Q 008510 5 GIISASHDCTIRLWALTGQVLMEM----VGHTAIVYSIDSHASGLIVSGSEDRFAKIWK-DGVCVQSIEH----PGCVWD 75 (563)
Q Consensus 5 ~l~s~s~DgtIrlWd~~g~~i~~l----~gH~~~V~~v~~~p~g~l~s~s~D~tvriWd-~~~~~~~l~h----~~~V~~ 75 (563)
.+..|+.++-|..|+........+ ......|+++...++|.+..|..++-+..++ .......+.+ ...|++
T Consensus 375 ~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~ 454 (781)
T 3v9f_A 375 KLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRV 454 (781)
T ss_dssp CEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEE
T ss_pred CEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEE
Confidence 355566555678888733222222 1234679999988888666677777788888 4344444432 347999
Q ss_pred EEEccCCcEEEEeCCCcEEEEEcCCCce
Q 008510 76 AKFLENGDIVTACSDGVTRIWTVHSDKV 103 (563)
Q Consensus 76 v~~~p~g~i~sgs~Dg~Irvwd~~~~~~ 103 (563)
+...++|.+..|+. +-+..||..+++.
T Consensus 455 i~~d~~g~lwigt~-~Gl~~~~~~~~~~ 481 (781)
T 3v9f_A 455 FYEDKNKKIWIGTH-AGVFVIDLASKKV 481 (781)
T ss_dssp EEECTTSEEEEEET-TEEEEEESSSSSC
T ss_pred EEECCCCCEEEEEC-CceEEEeCCCCeE
Confidence 99988999877777 5688899887653
No 288
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=88.31 E-value=14 Score=36.30 Aligned_cols=89 Identities=10% Similarity=0.036 Sum_probs=62.8
Q ss_pred CCcEEEEcCC----CceeEEEe--cC----------C-CcEEEEEEcCCC-eEEEEeCC-CcEEEEc-CCceeEEEe--c
Q 008510 12 DCTIRLWALT----GQVLMEMV--GH----------T-AIVYSIDSHASG-LIVSGSED-RFAKIWK-DGVCVQSIE--H 69 (563)
Q Consensus 12 DgtIrlWd~~----g~~i~~l~--gH----------~-~~V~~v~~~p~g-~l~s~s~D-~tvriWd-~~~~~~~l~--h 69 (563)
+..|..+|+. ++.+.... +. . .....+++.++| ..++++.- +.|...+ +++.+..+. .
T Consensus 99 ~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~~~ 178 (334)
T 2p9w_A 99 ASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTVSTFAWES 178 (334)
T ss_dssp CCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCEEEEEECC
T ss_pred CCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEeeeeecC
Confidence 6778899986 76665443 11 1 247899999999 77778877 7777667 766554443 1
Q ss_pred -----CCcEEEEEEccCCc-EEEEeCCCcEEEEEcCC
Q 008510 70 -----PGCVWDAKFLENGD-IVTACSDGVTRIWTVHS 100 (563)
Q Consensus 70 -----~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~ 100 (563)
......++++|+|. +++...+|.+..||++.
T Consensus 179 ~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 179 GNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp CCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred CCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 11366899999998 55555599999999883
No 289
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=88.06 E-value=0.45 Score=52.21 Aligned_cols=103 Identities=10% Similarity=0.103 Sum_probs=67.6
Q ss_pred cchHHHHHHHHHhhcCCCccH-HHHHh-h--H-HHHHHHhhhhccCCChhHHHHHHHHHHHHHhhhhhc-CCchhhhHHH
Q 008510 419 PANLLTGIRAVTNLFKNSSWY-SWLQK-N--R-SEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEK-KDEEGQSHVL 492 (563)
Q Consensus 419 ~~~~ll~lR~l~N~f~~~~~~-~~~~~-~--~-~~il~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~-~~~~~~~~l~ 492 (563)
...+-=++.++|||..++.+. +.+.. . + .+=+..+...+.+.+..+|.|++.++.|++...-.- +.--...+.+
T Consensus 620 ~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi 699 (778)
T 3opb_A 620 VPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELI 699 (778)
T ss_dssp HHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccH
Confidence 345666899999999988874 23321 1 1 122555666667789999999999999996432110 0000111344
Q ss_pred HHHHHhhhhcccChhHHHHHHHHHhhhhc
Q 008510 493 SAALEIAEEESIEVDSKYRALVAIGTLML 521 (563)
Q Consensus 493 ~~~~~~l~~~~~~~Ea~~R~l~AlG~l~~ 521 (563)
..+++++....+++|..+|.++++-+|.-
T Consensus 700 ~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 700 ENAIQVFADQIDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 55567675434789999999999999993
No 290
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=87.86 E-value=5 Score=39.89 Aligned_cols=190 Identities=14% Similarity=0.051 Sum_probs=95.5
Q ss_pred HHHHHHHHhcCCCCCccchhcHHHHhhcCC--CchhhhhhcccchhhHHHHHHHhhcCCCCCcchHHHHHHHHHhhcCCC
Q 008510 359 ISLLLKLLKTWPPAMIFPVIDILRMTILHP--DGASLLLKHVENQNDVLMEMIEKVSSNPTLPANLLTGIRAVTNLFKNS 436 (563)
Q Consensus 359 ~~~l~~~l~~Wp~~~~fP~lDL~Rl~~l~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~lR~l~N~f~~~ 436 (563)
++.|.+++..=..+.+..+.-.+|-+.... ..-..+. . .+.+..++..+... ..+..+--++++|.|+-.+.
T Consensus 129 Ip~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~--~---~G~Ip~Lv~lL~~~-~~~~~~~~A~~aL~nLs~~~ 202 (354)
T 3nmw_A 129 MRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLR--E---VGSVKALMECALEV-KKESTLKSVLSALWNLSAHC 202 (354)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHH--H---TTHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHH--H---CCCHHHHHHHHhcC-CCHHHHHHHHHHHHHHHccC
Confidence 555666664322344444555666555431 1112221 1 12233333322221 12334455778888887744
Q ss_pred -ccHHHHHhhHHHHHHHhhhhccCCCh----hHHHHHHHHHHHHHhhhhhc---CCchhhhHHHHHHHHhhhhcccChhH
Q 008510 437 -SWYSWLQKNRSEILDAFSSCYSSSNK----NVQLSYSTLILNYAVLLIEK---KDEEGQSHVLSAALEIAEEESIEVDS 508 (563)
Q Consensus 437 -~~~~~~~~~~~~il~~~~~~~~~~~k----~~~~a~atl~~N~s~~~~~~---~~~~~~~~l~~~~~~~l~~~~~~~Ea 508 (563)
..+..+... .-.+..+...+.+.+. .++..++.++.|++.+.... +..-.....+..+++.|. ..+.+.
T Consensus 203 ~~nk~~i~~~-~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~--~~~~~v 279 (354)
T 3nmw_A 203 TENKADICAV-DGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLK--SHSLTI 279 (354)
T ss_dssp HHHHHHHHHS-TTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTT--CSCHHH
T ss_pred hhhhHHHHHh-cCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHc--CCChHH
Confidence 334433311 1223333333333222 47888888999998642211 111111224566677774 356788
Q ss_pred HHHHHHHHhhhhc-hhHHHHHhhhcChHHHHHHHhhcCChhHHHHHHHHH
Q 008510 509 KYRALVAIGTLML-EGLVKKIALDFDVGNIARVAKASKETKIAEVGADIE 557 (563)
Q Consensus 509 ~~R~l~AlG~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ei~ 557 (563)
....+-||++|.. +.+..+.....+.-..+-.+-.+...++++.+...+
T Consensus 280 ~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL 329 (354)
T 3nmw_A 280 VSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAAL 329 (354)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHH
Confidence 8999999999996 445554444444433333333355566666554443
No 291
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=87.80 E-value=10 Score=36.05 Aligned_cols=101 Identities=13% Similarity=0.080 Sum_probs=48.5
Q ss_pred CCCEEEEEECCC-----cEEEEcCCCceeEEEecC-CC-cEEEEEEcCCC-eEEEEeCC-----CcEEEEc-CCceeEEE
Q 008510 2 PGVGIISASHDC-----TIRLWALTGQVLMEMVGH-TA-IVYSIDSHASG-LIVSGSED-----RFAKIWK-DGVCVQSI 67 (563)
Q Consensus 2 ~g~~l~s~s~Dg-----tIrlWd~~g~~i~~l~gH-~~-~V~~v~~~p~g-~l~s~s~D-----~tvriWd-~~~~~~~l 67 (563)
++..++.|+.++ .+.+||........+... .. .-.+++.. ++ .++.||.+ ..+.++| ....-..+
T Consensus 112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~ 190 (301)
T 2vpj_A 112 GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA-SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNV 190 (301)
T ss_dssp TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETTTTEEEEE
T ss_pred CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE-CCEEEEECCCCCCcccceEEEEeCCCCcEEeC
Confidence 355566666443 577777732222222111 11 11122222 45 66666655 3477777 33333333
Q ss_pred e---cCCcEEEEEEccCCc-EEEEeCC-----CcEEEEEcCCCcee
Q 008510 68 E---HPGCVWDAKFLENGD-IVTACSD-----GVTRIWTVHSDKVA 104 (563)
Q Consensus 68 ~---h~~~V~~v~~~p~g~-i~sgs~D-----g~Irvwd~~~~~~~ 104 (563)
. .+..-.++... ++. ++.|+.+ ..+.+||..+.+..
T Consensus 191 ~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 235 (301)
T 2vpj_A 191 TPMATKRSGAGVALL-NDHIYVVGGFDGTAHLSSVEAYNIRTDSWT 235 (301)
T ss_dssp CCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred CCCCcccccceEEEE-CCEEEEEeCCCCCcccceEEEEeCCCCcEE
Confidence 3 22222222222 556 5667664 46888888877643
No 292
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=87.40 E-value=2 Score=45.25 Aligned_cols=96 Identities=17% Similarity=0.085 Sum_probs=61.3
Q ss_pred HHHHHHHHhhcCCCccHHHHHhhHHHHHHHhhhhccCCChhHHHHHHHHHHHHHhhhhhcCCchhhhHHHHHHHHhhhhc
Q 008510 423 LTGIRAVTNLFKNSSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAALEIAEEE 502 (563)
Q Consensus 423 ll~lR~l~N~f~~~~~~~~~~~~~~~il~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~~~~~~~~l~~~~~~~l~~~ 502 (563)
-.+..+++|+..+......+ .....++..+...+.+.+..++..++..+.|++.........-....++..+++.+.
T Consensus 227 ~~a~~~L~nl~~~~~~~~~~-~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~-- 303 (529)
T 3tpo_A 227 RNLTWTLSNLCRNKNPAPPL-DAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLG-- 303 (529)
T ss_dssp HHHHHHHHHHHCCCTTCCCH-HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHT--
T ss_pred HHHHHHHHHHHhcccchhhH-HHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhc--
Confidence 34677888888765443322 123456666767777788889999999999987532111110011123455566664
Q ss_pred ccChhHHHHHHHHHhhhhc
Q 008510 503 SIEVDSKYRALVAIGTLML 521 (563)
Q Consensus 503 ~~~~Ea~~R~l~AlG~l~~ 521 (563)
..+++...-.+.|||+++.
T Consensus 304 ~~~~~v~~~a~~aL~nl~~ 322 (529)
T 3tpo_A 304 ATELPIVTPALRAIGNIVT 322 (529)
T ss_dssp CSCHHHHHHHHHHHHHHTT
T ss_pred CCChhHHHHHHHHHHHHHc
Confidence 4577888899999999987
No 293
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=87.35 E-value=7.3 Score=40.78 Aligned_cols=100 Identities=14% Similarity=0.081 Sum_probs=66.4
Q ss_pred CcchHHHHHHHHHhhcCCC-ccHHHHHhhHHHHHHHhhhhccCCChhHHHHHHHHHHHHHhhhhhcCCchhhhHHHHHHH
Q 008510 418 LPANLLTGIRAVTNLFKNS-SWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAAL 496 (563)
Q Consensus 418 ~~~~~ll~lR~l~N~f~~~-~~~~~~~~~~~~il~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~~~~~~~~l~~~~~ 496 (563)
.+..+..++++|+|+.... ..+..+... .++..+...+...+..++..++..+.|++..............++..++
T Consensus 186 ~~~vr~~A~~aL~~l~~~~~~~~~~~~~~--~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~ 263 (530)
T 1wa5_B 186 SVEVKEQAIWALGNVAGDSTDYRDYVLQC--NAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLA 263 (530)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHT--TCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCCccchHHHHHc--CcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHH
Confidence 3566788999999998774 344444332 2334444444446778999999999999864211122222334566667
Q ss_pred HhhhhcccChhHHHHHHHHHhhhhc
Q 008510 497 EIAEEESIEVDSKYRALVAIGTLML 521 (563)
Q Consensus 497 ~~l~~~~~~~Ea~~R~l~AlG~l~~ 521 (563)
+++. ..+++.....+.+|++|..
T Consensus 264 ~lL~--~~d~~v~~~a~~~L~~L~~ 286 (530)
T 1wa5_B 264 KLIY--SMDTETLVDACWAISYLSD 286 (530)
T ss_dssp HHTT--CCCHHHHHHHHHHHHHHHS
T ss_pred HHHc--CCCHHHHHHHHHHHHHHhC
Confidence 7774 3578999999999999987
No 294
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=87.13 E-value=22 Score=34.21 Aligned_cols=99 Identities=10% Similarity=-0.088 Sum_probs=65.4
Q ss_pred CCEEEEEECCCcEEEEcCCCceeEEEe-cCCCcEEEEEEcCC-C-eEEEEeCC-CcEEEEc-CCceeEEEe--cCCcEEE
Q 008510 3 GVGIISASHDCTIRLWALTGQVLMEMV-GHTAIVYSIDSHAS-G-LIVSGSED-RFAKIWK-DGVCVQSIE--HPGCVWD 75 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~~g~~i~~l~-gH~~~V~~v~~~p~-g-~l~s~s~D-~tvriWd-~~~~~~~l~--h~~~V~~ 75 (563)
++.+++-...+.|.+.+.+|....++. ........+++.|. | .+++.... +.|...+ ++.....+. .-.....
T Consensus 89 ~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~~~~~~P~g 168 (316)
T 1ijq_A 89 SNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNG 168 (316)
T ss_dssp TEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEE
T ss_pred CeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEECCCCCceE
Confidence 345555566788888888776554443 23456789999985 4 44554333 5677777 777666554 2236789
Q ss_pred EEEccCCc-E-EEEeCCCcEEEEEcCCC
Q 008510 76 AKFLENGD-I-VTACSDGVTRIWTVHSD 101 (563)
Q Consensus 76 v~~~p~g~-i-~sgs~Dg~Irvwd~~~~ 101 (563)
+++.|++. | ++-+..+.|..+|.+..
T Consensus 169 la~d~~~~~lY~~D~~~~~I~~~d~dg~ 196 (316)
T 1ijq_A 169 ITLDLLSGRLYWVDSKLHSISSIDVNGG 196 (316)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred EEEeccCCEEEEEECCCCeEEEEecCCC
Confidence 99998654 5 45556678999998753
No 295
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=86.82 E-value=6.1 Score=43.86 Aligned_cols=113 Identities=11% Similarity=0.003 Sum_probs=69.9
Q ss_pred HHHHHHHhhcCCCCCcchHHHHHHHHHhhcCCCccHHHHHhhHHHHHHHhhhhccCCChhHHHHHHHHHHHHHhhhhhcC
Q 008510 404 VLMEMIEKVSSNPTLPANLLTGIRAVTNLFKNSSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKK 483 (563)
Q Consensus 404 ~~~~~l~~~~~~~~~~~~~ll~lR~l~N~f~~~~~~~~~~~~~~~il~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~ 483 (563)
.+..++..+... ..+..+.-++++|.|+..+...+..+... .++..+...+.+.+..+|..++..+.|++......+
T Consensus 193 ~i~~Lv~~L~~~-~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~--g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~ 269 (780)
T 2z6g_A 193 MVSAIVRTMQNT-NDVETARCTSGTLHNLSHHREGLLAIFKS--GGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAK 269 (780)
T ss_dssp HHHHHHHHHHHC-CCHHHHHHHHHHHHHHHTSHHHHHHHHHT--THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHH
T ss_pred hHHHHHHHHcCC-CCHHHHHHHHHHHHHHhCCchhHHHHHHc--CCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhH
Confidence 344444433322 24456788999999988776665555432 456666666677788999999999999987632221
Q ss_pred CchhhhHHHHHHHHhhhhcccChhHHHHHHHHHhhhhc
Q 008510 484 DEEGQSHVLSAALEIAEEESIEVDSKYRALVAIGTLML 521 (563)
Q Consensus 484 ~~~~~~~l~~~~~~~l~~~~~~~Ea~~R~l~AlG~l~~ 521 (563)
..-.....+..+++++.. .+.+.....+-+|.+|..
T Consensus 270 ~~v~~~g~v~~Lv~lL~~--~~~~v~~~a~~aL~~La~ 305 (780)
T 2z6g_A 270 MAVRLAGGLQKMVALLNK--TNVKFLAITTDCLQILAY 305 (780)
T ss_dssp HHHHHTTHHHHHHHGGGC--CCHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHhc--CCHHHHHHHHHHHHHHhc
Confidence 111112345666777743 455555555667777765
No 296
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=86.39 E-value=4.1 Score=42.78 Aligned_cols=100 Identities=15% Similarity=0.104 Sum_probs=63.1
Q ss_pred CcchHHHHHHHHHhhcCCC-ccHHHHHhhHHHHHHHhhhhccCCChhHHHHHHHHHHHHHhhhhhcCCchhhhHHHHHHH
Q 008510 418 LPANLLTGIRAVTNLFKNS-SWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAAL 496 (563)
Q Consensus 418 ~~~~~ll~lR~l~N~f~~~-~~~~~~~~~~~~il~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~~~~~~~~l~~~~~ 496 (563)
.+..+..++++|.|+..+. ....... ...++..+...+.+.+..++..++..+.|++.........-....++..++
T Consensus 228 ~~~v~~~a~~~L~~L~~~~~~~~~~~~--~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv 305 (530)
T 1wa5_B 228 KPSLIRTATWTLSNLCRGKKPQPDWSV--VSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLV 305 (530)
T ss_dssp CHHHHHHHHHHHHHHHCCSSSCCCHHH--HGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCCCCCCcHHH--HHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHH
Confidence 3456677899999999764 2222211 233444555555566788999999999999853111000000113456667
Q ss_pred HhhhhcccChhHHHHHHHHHhhhhc
Q 008510 497 EIAEEESIEVDSKYRALVAIGTLML 521 (563)
Q Consensus 497 ~~l~~~~~~~Ea~~R~l~AlG~l~~ 521 (563)
+++. ..+++.....+-+||+|..
T Consensus 306 ~lL~--~~~~~v~~~a~~~L~~l~~ 328 (530)
T 1wa5_B 306 ELLS--HESTLVQTPALRAVGNIVT 328 (530)
T ss_dssp HGGG--CSCHHHHHHHHHHHHHHTT
T ss_pred HHHC--CCChhhHHHHHHHHHHHHc
Confidence 7774 3577888899999999987
No 297
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=85.92 E-value=4.3 Score=39.62 Aligned_cols=93 Identities=8% Similarity=0.008 Sum_probs=58.7
Q ss_pred EEEEECCCcEEEEcCC-CceeEEEe-c---CCCcEEEEEEcCCCeEEEEeCCCcEEEEc-CCceeEEEe----cCCcEEE
Q 008510 6 IISASHDCTIRLWALT-GQVLMEMV-G---HTAIVYSIDSHASGLIVSGSEDRFAKIWK-DGVCVQSIE----HPGCVWD 75 (563)
Q Consensus 6 l~s~s~DgtIrlWd~~-g~~i~~l~-g---H~~~V~~v~~~p~g~l~s~s~D~tvriWd-~~~~~~~l~----h~~~V~~ 75 (563)
+..++.+|.+++++.+ |+....+. + +...++++.+.+++.++.++.++.+..-. .++.-+.+. ++..+++
T Consensus 218 ~~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~g~i~~S~DgG~tW~~~~~~~~~~~~~~~ 297 (327)
T 2xbg_A 218 LWMIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGGAGALLCSQDGGQTWQQDVDVKKVPSNFYK 297 (327)
T ss_dssp EEEEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEESTTCEEEESSTTSSCEECGGGTTSSSCCCE
T ss_pred EEEEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeCCCeEEEeCCCCcccEEcCccCCCCCCeEE
Confidence 4455667877777433 44332222 1 23458899998877555556688774333 455444444 2457889
Q ss_pred EEEccCCcEEEEeCCCcEEEEEc
Q 008510 76 AKFLENGDIVTACSDGVTRIWTV 98 (563)
Q Consensus 76 v~~~p~g~i~sgs~Dg~Irvwd~ 98 (563)
|.|.+++.++.++.+|.|.-++-
T Consensus 298 v~~~~~~~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 298 ILFFSPDQGFILGQKGILLRYVT 320 (327)
T ss_dssp EEEEETTEEEEECSTTEEEEECC
T ss_pred EEEECCCceEEEcCCceEEEEcC
Confidence 99987777888888998877664
No 298
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=85.84 E-value=8.1 Score=38.36 Aligned_cols=100 Identities=17% Similarity=0.043 Sum_probs=63.5
Q ss_pred chHHHHHHHHHhhcCCCcc-HHHHHhhHHHHHHHhhhhccCCChhHHHHHHHHHHHHHhh-hhhcCCchhhhHHHHHHHH
Q 008510 420 ANLLTGIRAVTNLFKNSSW-YSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVL-LIEKKDEEGQSHVLSAALE 497 (563)
Q Consensus 420 ~~~ll~lR~l~N~f~~~~~-~~~~~~~~~~il~~~~~~~~~~~k~~~~a~atl~~N~s~~-~~~~~~~~~~~~l~~~~~~ 497 (563)
..+.-+..+|.|+-..... +..+.. ..-++..+...+.+.+..+|..++..+.|+|.. ....+..-.....+..+++
T Consensus 99 ~~q~~Aa~aL~nLa~~~~~~k~~i~~-~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~ 177 (354)
T 3nmw_A 99 TLRRYAGMALTNLTFGDVANKATLCS-MKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALME 177 (354)
T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHHH-CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHH-cCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHH
Confidence 4467788899998877653 333322 223455555666678899999999999999863 1111111011223555566
Q ss_pred hhhhcccChhHHHHHHHHHhhhhc
Q 008510 498 IAEEESIEVDSKYRALVAIGTLML 521 (563)
Q Consensus 498 ~l~~~~~~~Ea~~R~l~AlG~l~~ 521 (563)
+|.+ ..++++....+-||++|..
T Consensus 178 lL~~-~~~~~~~~~A~~aL~nLs~ 200 (354)
T 3nmw_A 178 CALE-VKKESTLKSVLSALWNLSA 200 (354)
T ss_dssp HHHH-CCCHHHHHHHHHHHHHHHT
T ss_pred HHhc-CCCHHHHHHHHHHHHHHHc
Confidence 6532 3467888888899999987
No 299
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=85.40 E-value=11 Score=38.42 Aligned_cols=68 Identities=15% Similarity=0.169 Sum_probs=48.7
Q ss_pred cEEEEEEcCCC-eEEEEeCCCcEEEEc--CCc----------e--eEEEe-------cCCcEEEEEEccCC---c-EEEE
Q 008510 34 IVYSIDSHASG-LIVSGSEDRFAKIWK--DGV----------C--VQSIE-------HPGCVWDAKFLENG---D-IVTA 87 (563)
Q Consensus 34 ~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~----------~--~~~l~-------h~~~V~~v~~~p~g---~-i~sg 87 (563)
.|..+..+|+| .++.. .+.+|.|-. .+. . .+++. .+..|..+.|+|-| . +++-
T Consensus 67 ~i~qlvlSpsG~lLAl~-g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL 145 (452)
T 3pbp_A 67 DTFHVISSTSGDLLCLF-NDNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL 145 (452)
T ss_dssp TTCEEEECTTSSEEEEE-CSSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE
T ss_pred ceeEEEECCCCCEEEEe-cCCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE
Confidence 47789999999 55554 566888876 111 1 12333 13579999999954 2 8999
Q ss_pred eCCCcEEEEEcCCCc
Q 008510 88 CSDGVTRIWTVHSDK 102 (563)
Q Consensus 88 s~Dg~Irvwd~~~~~ 102 (563)
..|++||+||+....
T Consensus 146 tsD~~Ir~yDl~~s~ 160 (452)
T 3pbp_A 146 KEDDTITMFDILNSQ 160 (452)
T ss_dssp ETTSCEEEEETTCTT
T ss_pred ecCCEEEEEEcccCC
Confidence 999999999998743
No 300
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=85.29 E-value=2.7 Score=46.58 Aligned_cols=71 Identities=10% Similarity=0.068 Sum_probs=44.4
Q ss_pred cCCC-cEEEEEEc-CCC-eEE-EEeCCC----cEEEEc--CC-ceeE-EEecCCcEEEEEEccCCc-EEEEeCC-----C
Q 008510 30 GHTA-IVYSIDSH-ASG-LIV-SGSEDR----FAKIWK--DG-VCVQ-SIEHPGCVWDAKFLENGD-IVTACSD-----G 91 (563)
Q Consensus 30 gH~~-~V~~v~~~-p~g-~l~-s~s~D~----tvriWd--~~-~~~~-~l~h~~~V~~v~~~p~g~-i~sgs~D-----g 91 (563)
+|.- .+...+|+ ||| .++ +.+.+| +|+++| ++ +.+. .+. ....+++|+|||+ |+....| .
T Consensus 170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~--~~~~~~~WspDg~~l~y~~~d~~~~~~ 247 (751)
T 2xe4_A 170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS--GTNGEIVWGPDHTSLFYVTKDETLREN 247 (751)
T ss_dssp TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE--EECSCCEECSSTTEEEEEEECTTCCEE
T ss_pred CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc--CceeeEEEecCCCEEEEEEECCCCCCC
Confidence 3443 67889999 999 544 333333 599999 55 4211 111 1234688999998 7666655 2
Q ss_pred cEEEEEcCCCc
Q 008510 92 VTRIWTVHSDK 102 (563)
Q Consensus 92 ~Irvwd~~~~~ 102 (563)
.|+++++.++.
T Consensus 248 ~v~~~~lgt~~ 258 (751)
T 2xe4_A 248 KVWRHVMGKLQ 258 (751)
T ss_dssp EEEEEETTSCG
T ss_pred EEEEEECCCCc
Confidence 57778887654
No 301
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=85.11 E-value=17 Score=34.23 Aligned_cols=98 Identities=13% Similarity=0.040 Sum_probs=64.8
Q ss_pred CCEEEEEECCCcEEEEcCCC----ceeEEEe-------cCCCcEEEEEEcCCC--eEEEEeCCCcEEEEc-CCceeEEEe
Q 008510 3 GVGIISASHDCTIRLWALTG----QVLMEMV-------GHTAIVYSIDSHASG--LIVSGSEDRFAKIWK-DGVCVQSIE 68 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~~g----~~i~~l~-------gH~~~V~~v~~~p~g--~l~s~s~D~tvriWd-~~~~~~~l~ 68 (563)
++.|..+.......+|.++| ..+..+. .+...+.+++++|.. .++.+.+.+.+-++| +++.+..+.
T Consensus 132 ~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~~~~~~ 211 (255)
T 3qqz_A 132 DHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEVIGEMS 211 (255)
T ss_dssp TTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEE
T ss_pred CCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCCEEEEEE
Confidence 34555555554555555532 2222221 123456889999974 677777888999999 888777776
Q ss_pred cC----------CcEEEEEEccCCcEEEEeCCCcEEEEEcCC
Q 008510 69 HP----------GCVWDAKFLENGDIVTACSDGVTRIWTVHS 100 (563)
Q Consensus 69 h~----------~~V~~v~~~p~g~i~sgs~Dg~Irvwd~~~ 100 (563)
.. ..--.|+|.++|++...|.-+.+++|...+
T Consensus 212 L~~g~~~l~~~~~qpEGia~d~~G~lyIvsE~n~~y~f~~~~ 253 (255)
T 3qqz_A 212 LTKGSRGLSHNIKQAEGVAMDASGNIYIVSEPNRFYRFTPQS 253 (255)
T ss_dssp CSTTGGGCSSCCCSEEEEEECTTCCEEEEETTTEEEEEEC--
T ss_pred cCCccCCcccccCCCCeeEECCCCCEEEEcCCceEEEEEecC
Confidence 22 156899999999977778888888876543
No 302
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=84.81 E-value=1.4 Score=47.22 Aligned_cols=72 Identities=17% Similarity=0.296 Sum_probs=50.4
Q ss_pred CCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCCeEEEEeCCCcEEEEc--CCceeEEEecCCcEEE--EEEccCCc
Q 008510 12 DCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWK--DGVCVQSIEHPGCVWD--AKFLENGD 83 (563)
Q Consensus 12 DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g~l~s~s~D~tvriWd--~~~~~~~l~h~~~V~~--v~~~p~g~ 83 (563)
+|.|.-||+ +|+.+.+...+...........++.++.++.|+.++.|| +|+.+..++.+..+.+ +.+..+|+
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~ 541 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGE 541 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred cceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCE
Confidence 688999999 899887776433211111112345777799999999999 8999998885544433 66667887
No 303
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=84.77 E-value=22 Score=36.15 Aligned_cols=99 Identities=8% Similarity=0.057 Sum_probs=59.3
Q ss_pred CEEEEEECCCcEEEEcCCCceeEEEecCCCcEEEEEEcCCC-eEEEEeCC---Cc-EEEEc-CCcee--EEEecCCcEEE
Q 008510 4 VGIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVSGSED---RF-AKIWK-DGVCV--QSIEHPGCVWD 75 (563)
Q Consensus 4 ~~l~s~s~DgtIrlWd~~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D---~t-vriWd-~~~~~--~~l~h~~~V~~ 75 (563)
..|..+...+.|+.++.....+.++.+......+++++++| .+++.... +. +...+ .+... ..+..-...+.
T Consensus 153 g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~~~~~P~g 232 (433)
T 4hw6_A 153 DDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLSLCNARGAKT 232 (433)
T ss_dssp CEEEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEEEEECSSBCC
T ss_pred CEEEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeeccccccccCCCCE
Confidence 34444444488999998433444555555678999999998 55554321 22 22233 22211 22322234567
Q ss_pred EEEcc-CCcEEEE-eCCCcEEEEEcCCCc
Q 008510 76 AKFLE-NGDIVTA-CSDGVTRIWTVHSDK 102 (563)
Q Consensus 76 v~~~p-~g~i~sg-s~Dg~Irvwd~~~~~ 102 (563)
+++.| +|.|..+ ..++.|+.+|..++.
T Consensus 233 iavd~~~G~lyv~d~~~~~V~~~d~~~g~ 261 (433)
T 4hw6_A 233 CAVHPQNGKIYYTRYHHAMISSYDPATGT 261 (433)
T ss_dssp CEECTTTCCEEECBTTCSEEEEECTTTCC
T ss_pred EEEeCCCCeEEEEECCCCEEEEEECCCCe
Confidence 88999 7776544 456789999988665
No 304
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=84.66 E-value=32 Score=33.98 Aligned_cols=94 Identities=15% Similarity=0.186 Sum_probs=64.4
Q ss_pred EEEEEC--CCcEEEEcC--CCceeEEEec------CC-CcEEEEEE--cCC-C--eEEEEeCCCcEEEEc-----CC---
Q 008510 6 IISASH--DCTIRLWAL--TGQVLMEMVG------HT-AIVYSIDS--HAS-G--LIVSGSEDRFAKIWK-----DG--- 61 (563)
Q Consensus 6 l~s~s~--DgtIrlWd~--~g~~i~~l~g------H~-~~V~~v~~--~p~-g--~l~s~s~D~tvriWd-----~~--- 61 (563)
++|.-. +.+|++|++ ....+..+.. .. ..++.+|+ +|. + +++....++.+..|+ .+
T Consensus 90 ~as~R~~~~n~l~vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~ 169 (355)
T 3amr_A 90 AASNRSEGKNTIEIYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYIS 169 (355)
T ss_dssp EEEECSTTCCEEEEEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEE
T ss_pred EEeCCCCCCCeEEEEEECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCccc
Confidence 344444 678999966 3334555522 12 56788888 674 4 577888899999988 12
Q ss_pred -ceeEEEecCCcEEEEEEccC-CcEEEEeCCCcEEEEEcC
Q 008510 62 -VCVQSIEHPGCVWDAKFLEN-GDIVTACSDGVTRIWTVH 99 (563)
Q Consensus 62 -~~~~~l~h~~~V~~v~~~p~-g~i~sgs~Dg~Irvwd~~ 99 (563)
+.++++..+..+-.+...+. |.|..+-.|.-|..|+.+
T Consensus 170 ~~lVR~f~lgsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~ 209 (355)
T 3amr_A 170 GKKVRAFKMNSQTEGMAADDEYGRLYIAEEDEAIWKFSAE 209 (355)
T ss_dssp EEEEEEEECSSCEEEEEEETTTTEEEEEETTTEEEEEECS
T ss_pred ceEEEEecCCCCcceEEEcCCCCeEEEecccceEEEEeCC
Confidence 45677777778888888875 458899888777666755
No 305
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=84.58 E-value=14 Score=39.67 Aligned_cols=112 Identities=11% Similarity=-0.006 Sum_probs=69.4
Q ss_pred HHHHHHhhcCCCCCcchHHHHHHHHHhhcCCCccHHHHHhhHHHHHHHhhhhccCCChhHHHHHHHHHHHHHhhhhhcCC
Q 008510 405 LMEMIEKVSSNPTLPANLLTGIRAVTNLFKNSSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKD 484 (563)
Q Consensus 405 ~~~~l~~~~~~~~~~~~~ll~lR~l~N~f~~~~~~~~~~~~~~~il~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~~ 484 (563)
+..++..+... ..+..+..++++|.|+..+...+..+... .++..+...+.+.+..+|..++..+.|++........
T Consensus 58 i~~Lv~~L~~~-~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~--g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~ 134 (644)
T 2z6h_A 58 VSAIVRTMQNT-NDVETARCTAGTLHNLSHHREGLLAIFKS--GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKM 134 (644)
T ss_dssp HHHHHHHHHSC-CCHHHHHHHHHHHHHHTTSHHHHHHHHTT--THHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHH
T ss_pred HHHHHHHHhcC-CCHHHHHHHHHHHHHHhcChhhHHHHHHc--CCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHH
Confidence 44444444332 23456788899999988887766666543 4455566666677889999999999999875321111
Q ss_pred chhhhHHHHHHHHhhhhcccChhHHHHHHHHHhhhhc
Q 008510 485 EEGQSHVLSAALEIAEEESIEVDSKYRALVAIGTLML 521 (563)
Q Consensus 485 ~~~~~~l~~~~~~~l~~~~~~~Ea~~R~l~AlG~l~~ 521 (563)
.-.....+..+++.+.. .+++.....+-+|++|..
T Consensus 135 ~v~~~g~i~~Lv~lL~~--~~~~~~~~a~~~L~~La~ 169 (644)
T 2z6h_A 135 AVRLAGGLQKMVALLNK--TNVKFLAITTDCLQILAY 169 (644)
T ss_dssp HHHHTTHHHHHHHGGGC--CCHHHHHHHHHHHHHHHT
T ss_pred HHHHCCChHHHHHHHCc--CCHHHHHHHHHHHHHHHh
Confidence 11112356666777753 344444444557888886
No 306
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=84.57 E-value=34 Score=34.02 Aligned_cols=99 Identities=11% Similarity=-0.034 Sum_probs=64.2
Q ss_pred CCEEEEEECCCcEEEEcCCCceeEEEe-cCCCcEEEEEEcCCC--eEEEEeCC-CcEEEEc-CCceeEEEec--CCcEEE
Q 008510 3 GVGIISASHDCTIRLWALTGQVLMEMV-GHTAIVYSIDSHASG--LIVSGSED-RFAKIWK-DGVCVQSIEH--PGCVWD 75 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~~g~~i~~l~-gH~~~V~~v~~~p~g--~l~s~s~D-~tvriWd-~~~~~~~l~h--~~~V~~ 75 (563)
|..+++-...+.|.+.+++|.....+. ..-.....+++.|.+ .+++-... +.|...+ ++.....+.. -..-..
T Consensus 171 g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnG 250 (386)
T 3v65_B 171 DKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNG 250 (386)
T ss_dssp TEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEE
T ss_pred CeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeee
Confidence 445556566677888888665544443 333567899999864 45554444 6677777 6666555542 235788
Q ss_pred EEEccCC-cE-EEEeCCCcEEEEEcCCC
Q 008510 76 AKFLENG-DI-VTACSDGVTRIWTVHSD 101 (563)
Q Consensus 76 v~~~p~g-~i-~sgs~Dg~Irvwd~~~~ 101 (563)
+++.|++ +| ++-+..+.|..+|++..
T Consensus 251 lavd~~~~~lY~aD~~~~~I~~~d~dG~ 278 (386)
T 3v65_B 251 LTIDYAGRRMYWVDAKHHVIERANLDGS 278 (386)
T ss_dssp EEEEGGGTEEEEEETTTTEEEEECTTSC
T ss_pred EEEeCCCCEEEEEECCCCEEEEEeCCCC
Confidence 9999754 45 45556678999998653
No 307
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=84.49 E-value=12 Score=35.53 Aligned_cols=101 Identities=10% Similarity=0.085 Sum_probs=48.4
Q ss_pred CCCEEEEEECCC-----cEEEEcCCCceeEEEecCC--CcEEEEEEcCCC-eEEEEeCC-------CcEEEEc-CCceeE
Q 008510 2 PGVGIISASHDC-----TIRLWALTGQVLMEMVGHT--AIVYSIDSHASG-LIVSGSED-------RFAKIWK-DGVCVQ 65 (563)
Q Consensus 2 ~g~~l~s~s~Dg-----tIrlWd~~g~~i~~l~gH~--~~V~~v~~~p~g-~l~s~s~D-------~tvriWd-~~~~~~ 65 (563)
++..++.||.++ .+.+||........+.... ..-.+++.. ++ .++.||.+ ..+.++| ....-.
T Consensus 108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~ 186 (302)
T 2xn4_A 108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV-GGLLYAVGGYDVASRQCLSTVECYNATTNEWT 186 (302)
T ss_dssp TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTTTEECCCEEEEETTTTEEE
T ss_pred CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE-CCEEEEEeCCCCCCCccccEEEEEeCCCCcEE
Confidence 456677777654 4667777333222222111 111122222 45 55556543 3477777 333222
Q ss_pred EEe---cCCcEEEEEEccCCc-EEEEeCC-----CcEEEEEcCCCcee
Q 008510 66 SIE---HPGCVWDAKFLENGD-IVTACSD-----GVTRIWTVHSDKVA 104 (563)
Q Consensus 66 ~l~---h~~~V~~v~~~p~g~-i~sgs~D-----g~Irvwd~~~~~~~ 104 (563)
.+. .+..-.++... ++. ++.|+.+ ..+.+||..+.+..
T Consensus 187 ~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 233 (302)
T 2xn4_A 187 YIAEMSTRRSGAGVGVL-NNLLYAVGGHDGPLVRKSVEVYDPTTNAWR 233 (302)
T ss_dssp EECCCSSCCBSCEEEEE-TTEEEEECCBSSSSBCCCEEEEETTTTEEE
T ss_pred ECCCCccccccccEEEE-CCEEEEECCCCCCcccceEEEEeCCCCCEe
Confidence 332 22222222222 556 5666654 36888888877644
No 308
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=84.39 E-value=8.3 Score=41.59 Aligned_cols=100 Identities=11% Similarity=0.023 Sum_probs=65.9
Q ss_pred CcchHHHHHHHHHhhcCCCccHHHHHhhHHHHHHHhhhhcc-CCChhHHHHHHHHHHHHHhhhhhcCCchhhhHHHHHHH
Q 008510 418 LPANLLTGIRAVTNLFKNSSWYSWLQKNRSEILDAFSSCYS-SSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAAL 496 (563)
Q Consensus 418 ~~~~~ll~lR~l~N~f~~~~~~~~~~~~~~~il~~~~~~~~-~~~k~~~~a~atl~~N~s~~~~~~~~~~~~~~l~~~~~ 496 (563)
.+..+.-++++|+|+-.+...+..+... ..++..+...+. +.+..+|..++..+.|++.... .+..-.....+..++
T Consensus 27 ~~~vr~~A~~~L~~La~~~~~~~~i~~~-~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~-~~~~i~~~g~i~~Lv 104 (644)
T 2z6h_A 27 DQVVVNKAAVMVHQLSKKEASRHAIMRS-PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHRE-GLLAIFKSGGIPALV 104 (644)
T ss_dssp CHHHHHHHHHHHHHHHTSTTHHHHHTTC-HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHH-HHHHHHTTTHHHHHH
T ss_pred CHHHHHHHHHHHHHHHCCChhHHHHHhc-cChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChh-hHHHHHHcCCHHHHH
Confidence 4566788999999998888766555432 233344444433 3477899999999999876422 111111123556667
Q ss_pred HhhhhcccChhHHHHHHHHHhhhhc
Q 008510 497 EIAEEESIEVDSKYRALVAIGTLML 521 (563)
Q Consensus 497 ~~l~~~~~~~Ea~~R~l~AlG~l~~ 521 (563)
+++. ..+++..+..+.+|++|..
T Consensus 105 ~lL~--~~~~~v~~~A~~aL~nL~~ 127 (644)
T 2z6h_A 105 KMLG--SPVDSVLFYAITTLHNLLL 127 (644)
T ss_dssp HHTT--CSSHHHHHHHHHHHHHHHH
T ss_pred HHHh--CCCHHHHHHHHHHHHHHHh
Confidence 7774 3578999999999999987
No 309
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=84.11 E-value=10 Score=42.13 Aligned_cols=100 Identities=12% Similarity=0.031 Sum_probs=65.3
Q ss_pred CcchHHHHHHHHHhhcCCCccHHHHHhhHHHHHHHhhhhcc-CCChhHHHHHHHHHHHHHhhhhhcCCchhhhHHHHHHH
Q 008510 418 LPANLLTGIRAVTNLFKNSSWYSWLQKNRSEILDAFSSCYS-SSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAAL 496 (563)
Q Consensus 418 ~~~~~ll~lR~l~N~f~~~~~~~~~~~~~~~il~~~~~~~~-~~~k~~~~a~atl~~N~s~~~~~~~~~~~~~~l~~~~~ 496 (563)
.+..+--++++|.|+-.+...+..+.. ...++..+...+. ..+..+|..++..+.|++..-.. ...-.....+..++
T Consensus 163 d~~vr~~A~~~L~~L~~~~~~~~~i~~-~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~-~~~i~~~g~I~~Lv 240 (780)
T 2z6g_A 163 DQVVVNKAAVMVHQLSKKEASRHAIMR-SPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREG-LLAIFKSGGIPALV 240 (780)
T ss_dssp CHHHHHHHHHHHHHHHTSHHHHHHHTT-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHH-HHHHHHTTHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCChhHHHHHh-ccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchh-HHHHHHcCCHHHHH
Confidence 345678888999998887665554432 2234444444433 34788999999999998764211 11111223566677
Q ss_pred HhhhhcccChhHHHHHHHHHhhhhc
Q 008510 497 EIAEEESIEVDSKYRALVAIGTLML 521 (563)
Q Consensus 497 ~~l~~~~~~~Ea~~R~l~AlG~l~~ 521 (563)
+++. ..+++..+-.+.+|++|..
T Consensus 241 ~lL~--~~~~~v~~~A~~aL~nLa~ 263 (780)
T 2z6g_A 241 NMLG--SPVDSVLFHAITTLHNLLL 263 (780)
T ss_dssp HHTT--CSCHHHHHHHHHHHHHHHH
T ss_pred HHHc--CCCHHHHHHHHHHHHHHhC
Confidence 7774 3578999999999999987
No 310
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=83.97 E-value=4.6 Score=41.68 Aligned_cols=139 Identities=17% Similarity=0.040 Sum_probs=80.5
Q ss_pred cchHHHHHHHHHhhcCCCccH-HHHHh-hH--HHHHHHhhhhccCCChhHHHHHHHHHHHHHhhhhhcCCchhhhHHHHH
Q 008510 419 PANLLTGIRAVTNLFKNSSWY-SWLQK-NR--SEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSA 494 (563)
Q Consensus 419 ~~~~ll~lR~l~N~f~~~~~~-~~~~~-~~--~~il~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~~~~~~~~l~~~ 494 (563)
+..+--++++|.|+-...... ..+.. .. ..++..+...+.+.+..++..+++++-|++... ..........+..
T Consensus 298 ~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~--~~~~~i~~~~i~~ 375 (457)
T 1xm9_A 298 DATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP--LLHRVMGNQVFPE 375 (457)
T ss_dssp HHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG--GGHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCH--HHHHHHHHhhhHH
Confidence 455566799999998754321 11100 00 233455556666778899999999999998631 1111112234566
Q ss_pred HHHhhhhcc----cChhHHHHHHHHHhhhhc-hhHHHHHhhhcChHHHHHHHhhcC-ChhHHHHHHHHHHH
Q 008510 495 ALEIAEEES----IEVDSKYRALVAIGTLML-EGLVKKIALDFDVGNIARVAKASK-ETKIAEVGADIELL 559 (563)
Q Consensus 495 ~~~~l~~~~----~~~Ea~~R~l~AlG~l~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~ei~~l 559 (563)
+++.|.... .++|++.-.+-+|++++. +++........|.-..+..+..+. ..++...|..++.-
T Consensus 376 Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~ 446 (457)
T 1xm9_A 376 VTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSD 446 (457)
T ss_dssp HHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 677775421 235788899999999987 333333222222222223333455 66788777777653
No 311
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=83.96 E-value=35 Score=33.67 Aligned_cols=94 Identities=15% Similarity=0.310 Sum_probs=64.4
Q ss_pred CEEEEEECCCcEEEEcCCCceeEEEecCCCcEEEEEEcCC----C----e-EEEEeC--CCcEEEEc---CCceeEEEec
Q 008510 4 VGIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHAS----G----L-IVSGSE--DRFAKIWK---DGVCVQSIEH 69 (563)
Q Consensus 4 ~~l~s~s~DgtIrlWd~~g~~i~~l~gH~~~V~~v~~~p~----g----~-l~s~s~--D~tvriWd---~~~~~~~l~h 69 (563)
++++.....+-+.+||++|+.+..+.+ +.++.|.+-|+ | . ++|.-. +.+|++++ ....+..+..
T Consensus 41 s~ii~t~k~~gL~Vydl~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~ 118 (355)
T 3amr_A 41 SKLITTNKKSGLVVYSLDGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTD 118 (355)
T ss_dssp CEEEEEETTTEEEEEETTSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSC
T ss_pred cEEEEEcCCCCEEEEcCCCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeeccc
Confidence 456666777889999999999999864 56777777663 2 2 333333 57899995 3334555532
Q ss_pred ---C-----CcEEEEEE--cc-CCc--EEEEeCCCcEEEEEcC
Q 008510 70 ---P-----GCVWDAKF--LE-NGD--IVTACSDGVTRIWTVH 99 (563)
Q Consensus 70 ---~-----~~V~~v~~--~p-~g~--i~sgs~Dg~Irvwd~~ 99 (563)
+ ..+..+++ +| .|. +.....+|.+..|++.
T Consensus 119 ~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~ 161 (355)
T 3amr_A 119 PDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELK 161 (355)
T ss_dssp TTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEE
T ss_pred cccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEE
Confidence 2 45677777 66 454 5677778999999883
No 312
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=83.93 E-value=17 Score=37.29 Aligned_cols=120 Identities=13% Similarity=0.102 Sum_probs=72.5
Q ss_pred HHHHHHhhcCCCCCcchHHHHHHHHHhhcCC-CccHHHHHhh--HHHHHHHhhhhccCCChhHHHHHHHHHHHHHhhhhh
Q 008510 405 LMEMIEKVSSNPTLPANLLTGIRAVTNLFKN-SSWYSWLQKN--RSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIE 481 (563)
Q Consensus 405 ~~~~l~~~~~~~~~~~~~ll~lR~l~N~f~~-~~~~~~~~~~--~~~il~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~ 481 (563)
+..++..+.+ ..+..+.-++++|.|+-.+ +..+..+... ...++..+.. +.+..++-.++..+.|+|.. ..
T Consensus 46 i~~Lv~lL~s--~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~---~~~~~~~~~a~~aL~nLa~~-~~ 119 (457)
T 1xm9_A 46 ICKLVDLLRS--PNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRR---TGNAEIQKQLTGLLWNLSST-DE 119 (457)
T ss_dssp HHHHHHHTTS--SCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTT---CCCHHHHHHHHHHHHHHHTS-SS
T ss_pred HHHHHHHHcC--CCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhh---CCCHHHHHHHHHHHHHHhcC-HH
Confidence 4444443332 3455678899999999886 5555555432 4444444421 45788999999999999975 22
Q ss_pred cCCchhhhHHHHHHHHhhh--------hc------ccChhHHHHHHHHHhhhhchhHHHHHhhh
Q 008510 482 KKDEEGQSHVLSAALEIAE--------EE------SIEVDSKYRALVAIGTLMLEGLVKKIALD 531 (563)
Q Consensus 482 ~~~~~~~~~l~~~~~~~l~--------~~------~~~~Ea~~R~l~AlG~l~~~~~~~~~~~~ 531 (563)
.+..-.. ..+..+++.+. .. ..+++.+...+-||++|...++.++....
T Consensus 120 ~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~~~~~~~i~~ 182 (457)
T 1xm9_A 120 LKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRN 182 (457)
T ss_dssp THHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTSHHHHHHHTT
T ss_pred hHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 1211112 45566667662 11 13566677788899999885444444443
No 313
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=83.65 E-value=35 Score=33.39 Aligned_cols=98 Identities=8% Similarity=-0.019 Sum_probs=63.7
Q ss_pred CEEEEEE-CCCcEEEEcCC-CceeEEEecC-----C--CcEEEEEE---cCCC-eEEEEe-------------CCCcEEE
Q 008510 4 VGIISAS-HDCTIRLWALT-GQVLMEMVGH-----T--AIVYSIDS---HASG-LIVSGS-------------EDRFAKI 57 (563)
Q Consensus 4 ~~l~s~s-~DgtIrlWd~~-g~~i~~l~gH-----~--~~V~~v~~---~p~g-~l~s~s-------------~D~tvri 57 (563)
..|..++ ..++|..|+.. +........+ . ..+..+.| .|++ .++... .++.|..
T Consensus 25 g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~ 104 (334)
T 2p9w_A 25 QVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHS 104 (334)
T ss_dssp TEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEE
T ss_pred CEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEE
Confidence 4455555 79999999995 4433332222 1 14689999 5888 554332 2677888
Q ss_pred Ec-C----CceeEEEec-------------C-CcEEEEEEccCCc-EEEEeCC-CcEEEEEcCCC
Q 008510 58 WK-D----GVCVQSIEH-------------P-GCVWDAKFLENGD-IVTACSD-GVTRIWTVHSD 101 (563)
Q Consensus 58 Wd-~----~~~~~~l~h-------------~-~~V~~v~~~p~g~-i~sgs~D-g~Irvwd~~~~ 101 (563)
+| . ++.+..... . .....++..++|+ -++++.. +.|..++.+..
T Consensus 105 ~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~ 169 (334)
T 2p9w_A 105 FNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK 169 (334)
T ss_dssp EESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC
T ss_pred EcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC
Confidence 99 6 666665541 1 2488999999999 5667777 77766666543
No 314
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=83.29 E-value=8.5 Score=38.90 Aligned_cols=100 Identities=15% Similarity=0.102 Sum_probs=66.0
Q ss_pred CcchHHHHHHHHHhhcCCCccHH-HHHhhHHHHHHHhhhhccCCChhHHHHHHHHHHHHHhhhhhcCCchhhhHHHHHHH
Q 008510 418 LPANLLTGIRAVTNLFKNSSWYS-WLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAAL 496 (563)
Q Consensus 418 ~~~~~ll~lR~l~N~f~~~~~~~-~~~~~~~~il~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~~~~~~~~l~~~~~ 496 (563)
.+..+.-++++|.|+..+..... .+.. ..++..+...+.+.+..+|.+++..+-|++.........-....++..++
T Consensus 247 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~ 324 (450)
T 2jdq_A 247 DYKVVSPALRAVGNIVTGDDIQTQVILN--CSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALI 324 (450)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHT--TTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHH
T ss_pred chhHHHHHHHHHHHHhhCChHHHHHHHH--CccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHH
Confidence 34567889999999988765432 2322 13555666666667889999999999999853111100000123556666
Q ss_pred HhhhhcccChhHHHHHHHHHhhhhc
Q 008510 497 EIAEEESIEVDSKYRALVAIGTLML 521 (563)
Q Consensus 497 ~~l~~~~~~~Ea~~R~l~AlG~l~~ 521 (563)
+.+. ..+++.....+.+|+++..
T Consensus 325 ~~l~--~~~~~v~~~a~~~L~~l~~ 347 (450)
T 2jdq_A 325 SILQ--TAEFRTRKEAAWAITNATS 347 (450)
T ss_dssp HHHH--HSCHHHHHHHHHHHHHHHH
T ss_pred HHHh--cCCHHHHHHHHHHHHHHHc
Confidence 7774 3577899999999999986
No 315
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=82.79 E-value=16 Score=34.55 Aligned_cols=100 Identities=9% Similarity=0.020 Sum_probs=48.2
Q ss_pred CCCEEEEEECC-----CcEEEEcC-CCc--eeEEEe---cCCCcEEEEEEcCCC-eEEEEeCCC-----cEEEEc-CCce
Q 008510 2 PGVGIISASHD-----CTIRLWAL-TGQ--VLMEMV---GHTAIVYSIDSHASG-LIVSGSEDR-----FAKIWK-DGVC 63 (563)
Q Consensus 2 ~g~~l~s~s~D-----gtIrlWd~-~g~--~i~~l~---gH~~~V~~v~~~p~g-~l~s~s~D~-----tvriWd-~~~~ 63 (563)
++..++.||.+ ..+.+||. +.+ ....+. ..... .+++.. ++ .++.||.++ .+.++| ....
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~-~~~~~~-~~~lyv~GG~~~~~~~~~~~~~d~~~~~ 139 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGL-AGATTL-GDMIYVSGGFDGSRRHTSMERYDPNIDQ 139 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBS-CEEEEE-TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccc-eeEEEE-CCEEEEEcccCCCcccceEEEEcCCCCe
Confidence 45566777755 35788887 433 022221 11111 122222 45 666666543 466777 3322
Q ss_pred eEEEe---cCCcEEEEEEccCCc-EEEEeCC-----CcEEEEEcCCCcee
Q 008510 64 VQSIE---HPGCVWDAKFLENGD-IVTACSD-----GVTRIWTVHSDKVA 104 (563)
Q Consensus 64 ~~~l~---h~~~V~~v~~~p~g~-i~sgs~D-----g~Irvwd~~~~~~~ 104 (563)
-..+. .+..-.+++. -++. ++.|+.+ ..+.+||..+.+..
T Consensus 140 W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~ 188 (301)
T 2vpj_A 140 WSMLGDMQTAREGAGLVV-ASGVIYCLGGYDGLNILNSVEKYDPHTGHWT 188 (301)
T ss_dssp EEEEEECSSCCBSCEEEE-ETTEEEEECCBCSSCBCCCEEEEETTTTEEE
T ss_pred EEECCCCCCCcccceEEE-ECCEEEEECCCCCCcccceEEEEeCCCCcEE
Confidence 22222 2222222222 2566 5666654 45788888777643
No 316
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=82.72 E-value=22 Score=37.86 Aligned_cols=139 Identities=17% Similarity=0.163 Sum_probs=81.4
Q ss_pred CcchHHHHHHHHHhhcCCCccHH-HHHh--hHHHHHHHhhhhccCCChhHHHHHHHHHHHHHhhhhhcCCchhhhHHHHH
Q 008510 418 LPANLLTGIRAVTNLFKNSSWYS-WLQK--NRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSA 494 (563)
Q Consensus 418 ~~~~~ll~lR~l~N~f~~~~~~~-~~~~--~~~~il~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~~~~~~~~l~~~ 494 (563)
.+..+-=+..+|.|+-....... .+.. .....+..+...+.+.+..++.+++.++-|++...... .......+..
T Consensus 322 ~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~--~~I~~g~ip~ 399 (584)
T 3l6x_A 322 TPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNK--ELIGKHAIPN 399 (584)
T ss_dssp CHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCH--HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHH--HHHHhCCHHH
Confidence 34555667888888865432211 1111 12445666777777888899999999999998743211 1122345667
Q ss_pred HHHhhhhcc------cChhHHHHHHHHHhhhhc-hhHHHHHhhhcC-hHHHHHHHhhc-CChhHHHHHHHHHH
Q 008510 495 ALEIAEEES------IEVDSKYRALVAIGTLML-EGLVKKIALDFD-VGNIARVAKAS-KETKIAEVGADIEL 558 (563)
Q Consensus 495 ~~~~l~~~~------~~~Ea~~R~l~AlG~l~~-~~~~~~~~~~~~-~~~~~~~~~~~-~~~~i~~~~~ei~~ 558 (563)
+++.|.... .++|++.-.+-+|++|+. +.+..+.....+ ++.++.=++.+ ...++.+.|.-++.
T Consensus 400 LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~ 472 (584)
T 3l6x_A 400 LVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQ 472 (584)
T ss_dssp HHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHH
T ss_pred HHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHH
Confidence 777775432 156899999999999987 333333222333 33333333322 24566666655543
No 317
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=82.57 E-value=38 Score=33.09 Aligned_cols=99 Identities=12% Similarity=-0.009 Sum_probs=65.6
Q ss_pred CCEEEEEECCCcEEEEcCCCceeEEEe-cCCCcEEEEEEcCC-C-eEEEEeCC-CcEEEEc-CCceeEEEec--CCcEEE
Q 008510 3 GVGIISASHDCTIRLWALTGQVLMEMV-GHTAIVYSIDSHAS-G-LIVSGSED-RFAKIWK-DGVCVQSIEH--PGCVWD 75 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~~g~~i~~l~-gH~~~V~~v~~~p~-g-~l~s~s~D-~tvriWd-~~~~~~~l~h--~~~V~~ 75 (563)
|..+++-...+.|.+.+++|.....+. ..-.....+++.|. | .+++-... +.|...+ ++.....+.. -..-..
T Consensus 128 g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnG 207 (349)
T 3v64_C 128 DKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNG 207 (349)
T ss_dssp TEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEE
T ss_pred CeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcce
Confidence 455566666778888888766544443 33456789999985 4 55555544 6777777 7665555532 235788
Q ss_pred EEEccCCc-E-EEEeCCCcEEEEEcCCC
Q 008510 76 AKFLENGD-I-VTACSDGVTRIWTVHSD 101 (563)
Q Consensus 76 v~~~p~g~-i-~sgs~Dg~Irvwd~~~~ 101 (563)
+++.|++. | ++-...+.|..+|.+..
T Consensus 208 la~d~~~~~lY~aD~~~~~I~~~~~dG~ 235 (349)
T 3v64_C 208 LTIDYAGRRMYWVDAKHHVIERANLDGS 235 (349)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred EEEeCCCCEEEEEECCCCEEEEEeCCCC
Confidence 99998554 5 45555678999998753
No 318
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=82.53 E-value=41 Score=33.41 Aligned_cols=95 Identities=8% Similarity=-0.044 Sum_probs=62.2
Q ss_pred EEEECCCcEEEEcCCCceeEEEecCCCcEEEEEEcCC-C-eEEEEeCCCcEEEEc-CCceeEEEe-c-CCcEEEEEEccC
Q 008510 7 ISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHAS-G-LIVSGSEDRFAKIWK-DGVCVQSIE-H-PGCVWDAKFLEN 81 (563)
Q Consensus 7 ~s~s~DgtIrlWd~~g~~i~~l~gH~~~V~~v~~~p~-g-~l~s~s~D~tvriWd-~~~~~~~l~-h-~~~V~~v~~~p~ 81 (563)
+..++...|+..++.+.....+.........++|++. + .+++-...+.|+.|+ .+.....+. . ......+++.+.
T Consensus 90 l~~~~~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~ 169 (386)
T 3v65_B 90 LLFANRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWV 169 (386)
T ss_dssp EEEECBSCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETT
T ss_pred eEeecCccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeC
Confidence 3344556789999855444444434456789999975 4 566666778898888 665554443 2 225567888874
Q ss_pred -CcE-EEEeCCCcEEEEEcCCC
Q 008510 82 -GDI-VTACSDGVTRIWTVHSD 101 (563)
Q Consensus 82 -g~i-~sgs~Dg~Irvwd~~~~ 101 (563)
+.| ++-...+.|.+++++..
T Consensus 170 ~g~lY~~d~~~~~I~~~~~dg~ 191 (386)
T 3v65_B 170 HDKLYWTDSGTSRIEVANLDGA 191 (386)
T ss_dssp TTEEEEEETTTTEEEECBTTSC
T ss_pred CCeEEEEcCCCCeEEEEeCCCC
Confidence 444 55566778888888754
No 319
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=82.35 E-value=9.7 Score=39.27 Aligned_cols=136 Identities=15% Similarity=0.040 Sum_probs=74.4
Q ss_pred cchHHHHHHHHHhhcC-CCccHHHHHhhHHHHHHHhhhhccCCCh----hHHHHHHHHHHHHHhhhhhcCC---chhhhH
Q 008510 419 PANLLTGIRAVTNLFK-NSSWYSWLQKNRSEILDAFSSCYSSSNK----NVQLSYSTLILNYAVLLIEKKD---EEGQSH 490 (563)
Q Consensus 419 ~~~~ll~lR~l~N~f~-~~~~~~~~~~~~~~il~~~~~~~~~~~k----~~~~a~atl~~N~s~~~~~~~~---~~~~~~ 490 (563)
+..+--++++|.|+-. ....+..+... .-.+..+...+...+. .++..++.++.|++.+.....+ .-....
T Consensus 301 ~~v~~~A~~aL~nLs~~~~~nk~~I~~~-~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G 379 (458)
T 3nmz_A 301 ESTLKSVLSALWNLSAHCTENKADICAV-DGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENN 379 (458)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHS-TTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHccCCHHHHHHHHHh-cCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcc
Confidence 3445667888888877 33444444311 1223333333333332 3778888899999964222111 101122
Q ss_pred HHHHHHHhhhhcccChhHHHHHHHHHhhhhc-hhHHHHHhhhcChHHHHHHHhhcCChhHHHHHHHHH
Q 008510 491 VLSAALEIAEEESIEVDSKYRALVAIGTLML-EGLVKKIALDFDVGNIARVAKASKETKIAEVGADIE 557 (563)
Q Consensus 491 l~~~~~~~l~~~~~~~Ea~~R~l~AlG~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ei~ 557 (563)
.+..+++.+. ..+.+.....+-||++|.. +.+..+.....|.-..+-.+..+...++++.+...+
T Consensus 380 ~i~~Lv~LL~--~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL 445 (458)
T 3nmz_A 380 CLQTLLQHLK--SHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAAL 445 (458)
T ss_dssp HHHHHHHHSS--CSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHH
T ss_pred cHHHHHHHHc--CCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHH
Confidence 4566677774 3567888999999999996 444444433334322332233355667666555444
No 320
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=81.80 E-value=15 Score=38.04 Aligned_cols=100 Identities=11% Similarity=0.025 Sum_probs=64.6
Q ss_pred CcchHHHHHHHHHhhcCCCccHHHHHhhHHHHHHHhhhhc-cCCChhHHHHHHHHHHHHHhhhhhcCCchhhhHHHHHHH
Q 008510 418 LPANLLTGIRAVTNLFKNSSWYSWLQKNRSEILDAFSSCY-SSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAAL 496 (563)
Q Consensus 418 ~~~~~ll~lR~l~N~f~~~~~~~~~~~~~~~il~~~~~~~-~~~~k~~~~a~atl~~N~s~~~~~~~~~~~~~~l~~~~~ 496 (563)
.+..+.-++++|.|+-.+...+..+... ..++..+...+ .+.+..+|..++..+.|++..-. .+..-.....+..++
T Consensus 30 ~~~v~~~A~~~L~~l~~~~~~~~~~~~~-~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~-~~~~i~~~g~i~~L~ 107 (529)
T 1jdh_A 30 DQVVVNKAAVMVHQLSKKEASRHAIMRS-PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHRE-GLLAIFKSGGIPALV 107 (529)
T ss_dssp CHHHHHHHHHHHHHHHTSHHHHHHHHTC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHH-HHHHHHHTTHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCccHHHHHhC-cchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCch-hHHHHHHcCCHHHHH
Confidence 4566788999999998887766555432 12233333333 23477899999999999875311 111111123456667
Q ss_pred HhhhhcccChhHHHHHHHHHhhhhc
Q 008510 497 EIAEEESIEVDSKYRALVAIGTLML 521 (563)
Q Consensus 497 ~~l~~~~~~~Ea~~R~l~AlG~l~~ 521 (563)
+++. ..+++..+..+.+|++|..
T Consensus 108 ~lL~--~~~~~v~~~a~~~L~~l~~ 130 (529)
T 1jdh_A 108 KMLG--SPVDSVLFYAITTLHNLLL 130 (529)
T ss_dssp HHTT--CSCHHHHHHHHHHHHHHHH
T ss_pred HHHc--CCCHHHHHHHHHHHHHHhc
Confidence 7774 3578999999999999987
No 321
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=81.61 E-value=15 Score=38.08 Aligned_cols=100 Identities=12% Similarity=-0.041 Sum_probs=65.0
Q ss_pred CcchHHHHHHHHHhhcCCCccHHHHHhhHHHHHHHhhhhccCCChhHHHHHHHHHHHHHhhhhhcCCchhhhHHHHHHHH
Q 008510 418 LPANLLTGIRAVTNLFKNSSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAALE 497 (563)
Q Consensus 418 ~~~~~ll~lR~l~N~f~~~~~~~~~~~~~~~il~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~~~~~~~~l~~~~~~ 497 (563)
.+..+..++++|.|+..++..+..+... ..+..+...+.+.+..+|..++..+.|++......+..-.....+..+++
T Consensus 73 ~~~~~~~a~~~L~~ls~~~~~~~~i~~~--g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ 150 (529)
T 1jdh_A 73 DVETARCTAGTLHNLSHHREGLLAIFKS--GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVA 150 (529)
T ss_dssp CHHHHHHHHHHHHHHTTSHHHHHHHHHT--THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCchhHHHHHHc--CCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHH
Confidence 3456788999999998887766655542 34555555666678889999999999998752221111112335666677
Q ss_pred hhhhcccChhHHHHHHHHHhhhhc
Q 008510 498 IAEEESIEVDSKYRALVAIGTLML 521 (563)
Q Consensus 498 ~l~~~~~~~Ea~~R~l~AlG~l~~ 521 (563)
++.. .+.+...-.+-+|++|..
T Consensus 151 ll~~--~~~~~~~~~~~~L~~la~ 172 (529)
T 1jdh_A 151 LLNK--TNVKFLAITTDCLQILAY 172 (529)
T ss_dssp GGGC--CCHHHHHHHHHHHHHHHT
T ss_pred HHhc--CCHHHHHHHHHHHHHHHh
Confidence 7743 455555555568888876
No 322
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=81.47 E-value=5.1 Score=37.23 Aligned_cols=114 Identities=11% Similarity=0.093 Sum_probs=66.2
Q ss_pred HHHHHHhhcCCCCCcchHHHHHHHHHhhc-CCCccHHHHHhhHHHHHHHhhhhccCCChhHHHHHHHHHHHHHhhhhhcC
Q 008510 405 LMEMIEKVSSNPTLPANLLTGIRAVTNLF-KNSSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKK 483 (563)
Q Consensus 405 ~~~~l~~~~~~~~~~~~~ll~lR~l~N~f-~~~~~~~~~~~~~~~il~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~ 483 (563)
+..++..+.+++..+..+..+.+.+.|+- .++..+..+... -.+..+...+.+.+..+|-.++..+.|+|.-....+
T Consensus 10 i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~--G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQL--RGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp HHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHT--THHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHc--CCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 44455444443222244567888888866 455556555432 123455555667889999999999999987422221
Q ss_pred CchhhhHHHHHHHHhhhhcccChhHHHHHHHHHhhhhc
Q 008510 484 DEEGQSHVLSAALEIAEEESIEVDSKYRALVAIGTLML 521 (563)
Q Consensus 484 ~~~~~~~l~~~~~~~l~~~~~~~Ea~~R~l~AlG~l~~ 521 (563)
..-.....+..+++++.. ..+.|+......||.+|..
T Consensus 88 ~~I~~~GaI~~Lv~lL~~-~~~~~~~e~a~~aL~nLS~ 124 (233)
T 3tt9_A 88 LEVAELNGVPRLLQVLKQ-TRDLETKKQITGLLWNLSS 124 (233)
T ss_dssp HHHHHTTHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHcc-CCCHHHHHHHHHHHHHHHc
Confidence 111111234555666642 2456776666677777765
No 323
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=81.40 E-value=8.5 Score=38.88 Aligned_cols=99 Identities=15% Similarity=0.003 Sum_probs=62.4
Q ss_pred CcchHHHHHHHHHhhcCCC-cc-HHHHHhhHHHHHHHhhhhccCCChhHHHHHHHHHHHHHhhhhhcCCchhhhHHHHHH
Q 008510 418 LPANLLTGIRAVTNLFKNS-SW-YSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAA 495 (563)
Q Consensus 418 ~~~~~ll~lR~l~N~f~~~-~~-~~~~~~~~~~il~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~~~~~~~~l~~~~ 495 (563)
.+..+..++++|.|+..+. .. ...+ ...++..+...+.+.+..++..++..+-|++.........-....++..+
T Consensus 163 ~~~v~~~a~~~L~~l~~~~~~~~~~~~---~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L 239 (450)
T 2jdq_A 163 RLTMTRNAVWALSNLCRGKSPPPEFAK---VSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRL 239 (450)
T ss_dssp CHHHHHHHHHHHHHHHCCSSSCCCGGG---TGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHH
T ss_pred CHHHHHHHHHHHHHHhCCCCCCCCHHH---HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHH
Confidence 4566788999999998764 21 1111 12344444444556678899999999999875321110000112345666
Q ss_pred HHhhhhcccChhHHHHHHHHHhhhhc
Q 008510 496 LEIAEEESIEVDSKYRALVAIGTLML 521 (563)
Q Consensus 496 ~~~l~~~~~~~Ea~~R~l~AlG~l~~ 521 (563)
++.+. ..+++.....+.+||+|..
T Consensus 240 ~~ll~--~~~~~v~~~a~~~L~~l~~ 263 (450)
T 2jdq_A 240 VELLM--HNDYKVVSPALRAVGNIVT 263 (450)
T ss_dssp HHHTT--CSCHHHHHHHHHHHHHHTT
T ss_pred HHHHC--CCchhHHHHHHHHHHHHhh
Confidence 67774 4578899999999999987
No 324
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=81.06 E-value=41 Score=32.44 Aligned_cols=99 Identities=11% Similarity=-0.048 Sum_probs=64.6
Q ss_pred CCEEEEEECCCcEEEEcCCCceeEEEe-cCCCcEEEEEEcCC-C-eEEEE-eCCCcEEEEc-CCceeEEEec--CCcEEE
Q 008510 3 GVGIISASHDCTIRLWALTGQVLMEMV-GHTAIVYSIDSHAS-G-LIVSG-SEDRFAKIWK-DGVCVQSIEH--PGCVWD 75 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~~g~~i~~l~-gH~~~V~~v~~~p~-g-~l~s~-s~D~tvriWd-~~~~~~~l~h--~~~V~~ 75 (563)
|..+++-...+.|.+++++|.....+. ........+++.|. | .+++- +..+.|...+ +|.....+.. -..-..
T Consensus 91 g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Png 170 (318)
T 3sov_A 91 EKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNG 170 (318)
T ss_dssp TEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEE
T ss_pred CeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccE
Confidence 445555556778888888776555543 34456789999986 4 44443 2346677667 6665555542 235689
Q ss_pred EEEccCCc-E-EEEeCCCcEEEEEcCCC
Q 008510 76 AKFLENGD-I-VTACSDGVTRIWTVHSD 101 (563)
Q Consensus 76 v~~~p~g~-i-~sgs~Dg~Irvwd~~~~ 101 (563)
+++.|++. | ++-+..+.|..+|.+..
T Consensus 171 lavd~~~~~lY~aD~~~~~I~~~d~dG~ 198 (318)
T 3sov_A 171 LTLDYEEQKLYWADAKLNFIHKSNLDGT 198 (318)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred EEEeccCCEEEEEECCCCEEEEEcCCCC
Confidence 99998554 5 45556788999998753
No 325
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=80.65 E-value=51 Score=33.30 Aligned_cols=67 Identities=9% Similarity=0.068 Sum_probs=46.4
Q ss_pred cEEEEEEcC-CC-eEEEEeCCCcEEEEc-CCcee-EEEecC--CcEEEEEEccCCc-E-EEEeCCCcEEEEEcCC
Q 008510 34 IVYSIDSHA-SG-LIVSGSEDRFAKIWK-DGVCV-QSIEHP--GCVWDAKFLENGD-I-VTACSDGVTRIWTVHS 100 (563)
Q Consensus 34 ~V~~v~~~p-~g-~l~s~s~D~tvriWd-~~~~~-~~l~h~--~~V~~v~~~p~g~-i-~sgs~Dg~Irvwd~~~ 100 (563)
...+++++| +| .+++-..++.|..++ .+... ...... ..-..++|+|+|+ + ++-...+.|+.|+.+.
T Consensus 227 ~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 227 NCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp SCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred CceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCc
Confidence 356788999 67 566666678888888 55444 323322 3577899999998 5 4445678899988764
No 326
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=79.87 E-value=16 Score=34.71 Aligned_cols=16 Identities=19% Similarity=0.503 Sum_probs=13.3
Q ss_pred EEEEecccceEEEeCc
Q 008510 161 AYSWDMKEQKWDKLGE 176 (563)
Q Consensus 161 ~~~wd~~~~~w~~~g~ 176 (563)
++.+|..++.|..+..
T Consensus 218 ~~~yd~~~~~W~~~~~ 233 (306)
T 3ii7_A 218 VEYYDIKLNEWKMVSP 233 (306)
T ss_dssp EEEEETTTTEEEECCC
T ss_pred EEEeeCCCCcEEECCC
Confidence 6789999999998753
No 327
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=79.12 E-value=38 Score=37.67 Aligned_cols=100 Identities=13% Similarity=0.063 Sum_probs=75.5
Q ss_pred CcchHHHHHHHHHhhcCCCccHHHHHhhHHHHHHHhhhhccCCChhHHHHHHHHHHHHHhhhhhcCCchhhhHHHHHHHH
Q 008510 418 LPANLLTGIRAVTNLFKNSSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAALE 497 (563)
Q Consensus 418 ~~~~~ll~lR~l~N~f~~~~~~~~~~~~~~~il~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~~~~~~~~l~~~~~~ 497 (563)
.+..+..+++++.++..... ..+..+...++..+...+..++..+|.+++..+-+++-.............++..+++
T Consensus 372 ~~~~R~aa~~alg~i~~~~~--~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~ 449 (852)
T 4fdd_A 372 EWVVKESGILVLGAIAEGCM--QGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLK 449 (852)
T ss_dssp SHHHHHHHHHHHHHTTTTTH--HHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcch--HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 45677888999988876554 2344567888888888888889999999999999999876554333334556677777
Q ss_pred hhhhcccChhHHHHHHHHHhhhhc
Q 008510 498 IAEEESIEVDSKYRALVAIGTLML 521 (563)
Q Consensus 498 ~l~~~~~~~Ea~~R~l~AlG~l~~ 521 (563)
.+. ..+++.....+.||++++.
T Consensus 450 ~L~--d~~~~vr~~a~~aL~~l~~ 471 (852)
T 4fdd_A 450 RIL--DSNKRVQEAACSAFATLEE 471 (852)
T ss_dssp HHT--CSSHHHHHHHHHHHHHHHH
T ss_pred HHh--CCCHHHHHHHHHHHHHHHH
Confidence 773 3577888899999999885
No 328
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=78.91 E-value=14 Score=38.02 Aligned_cols=101 Identities=16% Similarity=0.020 Sum_probs=63.6
Q ss_pred chHHHHHHHHHhhcCCCccHHHHHhhHHHHHHHhhhhccCCChhHHHHHHHHHHHHHhh-hhhcCCchhhhHHHHHHHHh
Q 008510 420 ANLLTGIRAVTNLFKNSSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVL-LIEKKDEEGQSHVLSAALEI 498 (563)
Q Consensus 420 ~~~ll~lR~l~N~f~~~~~~~~~~~~~~~il~~~~~~~~~~~k~~~~a~atl~~N~s~~-~~~~~~~~~~~~l~~~~~~~ 498 (563)
..+.-+..+|.|+-.+......+.....-++..+...+.+.+..++..++..+.|+|.. ....+..-.....+..++++
T Consensus 215 ~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~l 294 (458)
T 3nmz_A 215 TLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMEC 294 (458)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHH
Confidence 44677889999988776644433321233455566666678899999999999999863 11111110111234555666
Q ss_pred hhhcccChhHHHHHHHHHhhhhc
Q 008510 499 AEEESIEVDSKYRALVAIGTLML 521 (563)
Q Consensus 499 l~~~~~~~Ea~~R~l~AlG~l~~ 521 (563)
|.. ..++++....+-||++|..
T Consensus 295 Ll~-s~~~~v~~~A~~aL~nLs~ 316 (458)
T 3nmz_A 295 ALE-VKKESTLKSVLSALWNLSA 316 (458)
T ss_dssp HTT-CCSHHHHHHHHHHHHHHHH
T ss_pred Hhc-CCCHHHHHHHHHHHHHHcc
Confidence 532 3467888888899999987
No 329
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=78.24 E-value=14 Score=35.27 Aligned_cols=100 Identities=9% Similarity=-0.009 Sum_probs=47.7
Q ss_pred CCCEEEEEECC-----CcEEEEcCCCceeEEEec---CCCcEEEEEEcCCC-eEEEEeCC-----CcEEEEc-CCceeEE
Q 008510 2 PGVGIISASHD-----CTIRLWALTGQVLMEMVG---HTAIVYSIDSHASG-LIVSGSED-----RFAKIWK-DGVCVQS 66 (563)
Q Consensus 2 ~g~~l~s~s~D-----gtIrlWd~~g~~i~~l~g---H~~~V~~v~~~p~g-~l~s~s~D-----~tvriWd-~~~~~~~ 66 (563)
++..++.|+.+ ..+.+||........+.. .... .+++.. ++ .++.||.+ ..+.++| ....-..
T Consensus 121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~ 198 (308)
T 1zgk_A 121 DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIG-VGVAVL-NRLLYAVGGFDGTNRLNSAECYYPERNEWRM 198 (308)
T ss_dssp TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBS-CEEEEE-TTEEEEECCBCSSCBCCCEEEEETTTTEEEE
T ss_pred CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccc-eEEEEE-CCEEEEEeCCCCCCcCceEEEEeCCCCeEee
Confidence 35556665543 356777773222222211 1111 122222 45 66666655 3477777 3332222
Q ss_pred Ee---cCCcEEEEEEccCCc-EEEEeCC-----CcEEEEEcCCCcee
Q 008510 67 IE---HPGCVWDAKFLENGD-IVTACSD-----GVTRIWTVHSDKVA 104 (563)
Q Consensus 67 l~---h~~~V~~v~~~p~g~-i~sgs~D-----g~Irvwd~~~~~~~ 104 (563)
+. .+..-.++... ++. ++.|+.+ ..+.+||..+.+..
T Consensus 199 ~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~ 244 (308)
T 1zgk_A 199 ITAMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETETWT 244 (308)
T ss_dssp CCCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred CCCCCCccccceEEEE-CCEEEEEeCCCCCCccceEEEEeCCCCcEE
Confidence 22 22222222222 556 5666654 45888888877644
No 330
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=77.49 E-value=61 Score=32.35 Aligned_cols=99 Identities=10% Similarity=-0.091 Sum_probs=65.4
Q ss_pred CCEEEEEECCCcEEEEcCCCceeEEEec-CCCcEEEEEEcCC-C-eEEEEeC-CCcEEEEc-CCceeEEEec--CCcEEE
Q 008510 3 GVGIISASHDCTIRLWALTGQVLMEMVG-HTAIVYSIDSHAS-G-LIVSGSE-DRFAKIWK-DGVCVQSIEH--PGCVWD 75 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~~g~~i~~l~g-H~~~V~~v~~~p~-g-~l~s~s~-D~tvriWd-~~~~~~~l~h--~~~V~~ 75 (563)
++.+++-...+.|.+.+++|....++.. .-.....+++.|. | .+++-.. .+.|...+ ++.....+.. -.....
T Consensus 171 ~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~g 250 (400)
T 3p5b_L 171 SNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNG 250 (400)
T ss_dssp TEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEE
T ss_pred CceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEE
Confidence 4556666667888888887765554432 3355789999985 4 4444322 36677777 7766555542 246789
Q ss_pred EEEccCCc-EE-EEeCCCcEEEEEcCCC
Q 008510 76 AKFLENGD-IV-TACSDGVTRIWTVHSD 101 (563)
Q Consensus 76 v~~~p~g~-i~-sgs~Dg~Irvwd~~~~ 101 (563)
+++.+++. |. +-...+.|+.+|++..
T Consensus 251 lavd~~~~~lY~aD~~~~~I~~~d~dG~ 278 (400)
T 3p5b_L 251 ITLDLLSGRLYWVDSKLHSISSIDVNGG 278 (400)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred EEEEeCCCEEEEEECCCCEEEEEeCCCC
Confidence 99998655 54 4455678999998754
No 331
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=77.45 E-value=19 Score=34.42 Aligned_cols=15 Identities=20% Similarity=0.702 Sum_probs=12.8
Q ss_pred EEEEEecccceEEEe
Q 008510 160 VAYSWDMKEQKWDKL 174 (563)
Q Consensus 160 ~~~~wd~~~~~w~~~ 174 (563)
.++.+|..+..|..+
T Consensus 269 ~v~~yd~~~~~W~~~ 283 (315)
T 4asc_A 269 DIWRYNEEEKKWEGV 283 (315)
T ss_dssp EEEEEETTTTEEEEE
T ss_pred cEEEecCCCChhhhh
Confidence 367899999999987
No 332
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=77.31 E-value=46 Score=31.11 Aligned_cols=95 Identities=7% Similarity=0.051 Sum_probs=61.4
Q ss_pred CEEEEEECCCcEEEEcCCCceeEEEe--cCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc---CCc--eeEEEe-------
Q 008510 4 VGIISASHDCTIRLWALTGQVLMEMV--GHTAIVYSIDSHASG-LIVSGSEDRFAKIWK---DGV--CVQSIE------- 68 (563)
Q Consensus 4 ~~l~s~s~DgtIrlWd~~g~~i~~l~--gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd---~~~--~~~~l~------- 68 (563)
.++++...++.|...|.+|+.++++. |. .-...|++.+++ .+++.-.++.+.+++ .+. .+..+.
T Consensus 40 ~L~aV~d~~~~I~~ld~~g~v~~~i~l~g~-~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~ 118 (255)
T 3qqz_A 40 TLFSTINKPAAIVEMTTNGDLIRTIPLDFV-KDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESP 118 (255)
T ss_dssp EEEEEEETTEEEEEEETTCCEEEEEECSSC-SSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCC
T ss_pred EEEEEECCCCeEEEEeCCCCEEEEEecCCC-CChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeecccccccc
Confidence 34555666777888888888888873 33 456788998888 555544556788887 332 223332
Q ss_pred cCCcEEEEEEccCCc-EEEEeCCCcEEEEEcC
Q 008510 69 HPGCVWDAKFLENGD-IVTACSDGVTRIWTVH 99 (563)
Q Consensus 69 h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~ 99 (563)
.....-.++|.|.+. +.++.......+|..+
T Consensus 119 ~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~ 150 (255)
T 3qqz_A 119 TNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVN 150 (255)
T ss_dssp CSSCCEEEEEETTTTEEEEEEESSSEEEEEEE
T ss_pred ccCCcceEEEeCCCCEEEEEECcCCceEEEEc
Confidence 123568999999885 6666665555555554
No 333
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=76.45 E-value=28 Score=32.84 Aligned_cols=17 Identities=12% Similarity=0.442 Sum_probs=13.7
Q ss_pred EEEEEecccceEEEeCc
Q 008510 160 VAYSWDMKEQKWDKLGE 176 (563)
Q Consensus 160 ~~~~wd~~~~~w~~~g~ 176 (563)
.++.+|..+..|..+..
T Consensus 221 ~~~~yd~~~~~W~~~~~ 237 (302)
T 2xn4_A 221 SVEVYDPTTNAWRQVAD 237 (302)
T ss_dssp CEEEEETTTTEEEEECC
T ss_pred eEEEEeCCCCCEeeCCC
Confidence 37789999999998753
No 334
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=74.49 E-value=27 Score=33.07 Aligned_cols=19 Identities=16% Similarity=0.338 Sum_probs=15.0
Q ss_pred EEEEEecccceEEEeCcEe
Q 008510 160 VAYSWDMKEQKWDKLGEVV 178 (563)
Q Consensus 160 ~~~~wd~~~~~w~~~g~v~ 178 (563)
.++.||..+..|..+....
T Consensus 264 ~~~~yd~~~~~W~~~~~~~ 282 (306)
T 3ii7_A 264 HILEYNTETDKWVANSKVR 282 (306)
T ss_dssp EEEEEETTTTEEEEEEEEE
T ss_pred eEEEEcCCCCeEEeCCCcc
Confidence 4788999999999876543
No 335
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=72.82 E-value=11 Score=41.07 Aligned_cols=98 Identities=9% Similarity=-0.120 Sum_probs=61.2
Q ss_pred CCEEEEEECCCcEEEEcCCCceeEEEec-CCCcEEEEEEcCCC--eEEEEeCC-CcEEEEc-CCceeEEEe-c-CCcEEE
Q 008510 3 GVGIISASHDCTIRLWALTGQVLMEMVG-HTAIVYSIDSHASG--LIVSGSED-RFAKIWK-DGVCVQSIE-H-PGCVWD 75 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~~g~~i~~l~g-H~~~V~~v~~~p~g--~l~s~s~D-~tvriWd-~~~~~~~l~-h-~~~V~~ 75 (563)
|+++++-...+.|.+.+++|..+.++.. .......+++.|.+ .+++-... +.|...+ ++.....+. . -..-..
T Consensus 465 g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnG 544 (699)
T 1n7d_A 465 SNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNG 544 (699)
T ss_dssp SBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCC
T ss_pred CcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccE
Confidence 3455555567789999987766555532 22445788999864 44443222 6677777 665544443 1 224567
Q ss_pred EEEccCCc-E-EEEeCCCcEEEEEcCC
Q 008510 76 AKFLENGD-I-VTACSDGVTRIWTVHS 100 (563)
Q Consensus 76 v~~~p~g~-i-~sgs~Dg~Irvwd~~~ 100 (563)
|++.|++. | ++-+..+.|.+++++.
T Consensus 545 lavd~~~~~LY~aD~~~~~I~~~d~dG 571 (699)
T 1n7d_A 545 ITLDLLSGRLYWVDSKLHSISSIDVNG 571 (699)
T ss_dssp EEECTTTCCEEEEETTTTEEEEECSSS
T ss_pred EEEeccCCEEEEEecCCCeEEEEccCC
Confidence 89998654 5 4555667899998864
No 336
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=72.19 E-value=24 Score=32.58 Aligned_cols=68 Identities=13% Similarity=0.060 Sum_probs=45.1
Q ss_pred HhhhhccCCCh--hHHHHHHHHHHHHHhhhhhcCCchhhhHHHHHHHHhhhhcccChhHHHHHHHHHhhhhc
Q 008510 452 AFSSCYSSSNK--NVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAALEIAEEESIEVDSKYRALVAIGTLML 521 (563)
Q Consensus 452 ~~~~~~~~~~k--~~~~a~atl~~N~s~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~Ea~~R~l~AlG~l~~ 521 (563)
.+...+.+.+. .++..+|..+.|++.-....+..-.....+..++++|. ..+++..+...-||++|.+
T Consensus 12 ~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~--s~~~~vq~~Aa~aL~nLa~ 81 (233)
T 3tt9_A 12 RAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLK--VQNEDVQRAVCGALRNLVF 81 (233)
T ss_dssp HHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGG--CCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHc--CCCHHHHHHHHHHHHHHHh
Confidence 34445555565 78888888899988643222211111224566678885 3678999999999999988
No 337
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=71.93 E-value=36 Score=32.40 Aligned_cols=15 Identities=7% Similarity=0.541 Sum_probs=12.7
Q ss_pred EEEEEecccceEEEe
Q 008510 160 VAYSWDMKEQKWDKL 174 (563)
Q Consensus 160 ~~~~wd~~~~~w~~~ 174 (563)
.++.+|..+..|..+
T Consensus 279 ~v~~yd~~~~~W~~~ 293 (318)
T 2woz_A 279 DIWKYEDDKKEWAGM 293 (318)
T ss_dssp CEEEEETTTTEEEEE
T ss_pred eEEEEeCCCCEehhh
Confidence 367899999999987
No 338
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=71.92 E-value=1.2e+02 Score=33.33 Aligned_cols=100 Identities=11% Similarity=-0.059 Sum_probs=67.0
Q ss_pred CCEEEEEECCCcEEEEcCCCceeEEEec-CCCcEEEEEEcCC-C-eEEEEeCC-CcEEEEc-CCceeEEEecC--CcEEE
Q 008510 3 GVGIISASHDCTIRLWALTGQVLMEMVG-HTAIVYSIDSHAS-G-LIVSGSED-RFAKIWK-DGVCVQSIEHP--GCVWD 75 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~~g~~i~~l~g-H~~~V~~v~~~p~-g-~l~s~s~D-~tvriWd-~~~~~~~l~h~--~~V~~ 75 (563)
++++++-...+.|.+.+++|....++.. .-.....|++.|. | .+++-... +.|...+ +|....++... .....
T Consensus 483 ~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~G 562 (791)
T 3m0c_C 483 SNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNG 562 (791)
T ss_dssp TEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEE
T ss_pred CcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceE
Confidence 3566666677889999987776666543 3456789999996 5 44443222 5677777 77766666532 37889
Q ss_pred EEEccC-CcEE-EEeCCCcEEEEEcCCCc
Q 008510 76 AKFLEN-GDIV-TACSDGVTRIWTVHSDK 102 (563)
Q Consensus 76 v~~~p~-g~i~-sgs~Dg~Irvwd~~~~~ 102 (563)
|++.+. ++|. +-...+.|..++++...
T Consensus 563 LavD~~~~~LYwaD~~~~~I~~~d~dG~~ 591 (791)
T 3m0c_C 563 ITLDLLSGRLYWVDSKLHSISSIDVNGGN 591 (791)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred EEEecCCCeEEEEeCCCCcEEEEecCCCc
Confidence 999975 4454 44456788999886543
No 339
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=71.55 E-value=30 Score=38.30 Aligned_cols=99 Identities=7% Similarity=0.037 Sum_probs=64.6
Q ss_pred CcchHHHHHHHHHhhcCCCccHHHHHhh--HHHHHHHhhhhccCCChhHHHHHHHHHHHHHhhhhhcCCch--hhhHHHH
Q 008510 418 LPANLLTGIRAVTNLFKNSSWYSWLQKN--RSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDEE--GQSHVLS 493 (563)
Q Consensus 418 ~~~~~ll~lR~l~N~f~~~~~~~~~~~~--~~~il~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~~~~--~~~~l~~ 493 (563)
.+..+--+.++|.|+-.++..+..+..+ ...++.. +.+.....|..+|..+.|++..-....... ...+.+.
T Consensus 508 s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~L----L~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIp 583 (810)
T 3now_A 508 SHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRM----ALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIR 583 (810)
T ss_dssp CHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHH----HHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHH
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHH----HccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHH
Confidence 4566788999999998887778777654 3444444 445567788899999999987522211000 1123456
Q ss_pred HHHHhhhhcccChhHHHHHHHHHhhhhc
Q 008510 494 AALEIAEEESIEVDSKYRALVAIGTLML 521 (563)
Q Consensus 494 ~~~~~l~~~~~~~Ea~~R~l~AlG~l~~ 521 (563)
.++++|.. ..+....+-.+.||++|..
T Consensus 584 pLv~LL~~-~~~~l~~~eAl~AL~NLa~ 610 (810)
T 3now_A 584 PLLNLLQQ-DCTALENFESLMALTNLAS 610 (810)
T ss_dssp HHHHTTST-TSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHhCC-CCcHHHHHHHHHHHHHHhc
Confidence 66677742 2233445678999999998
No 340
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=71.53 E-value=2.4 Score=41.95 Aligned_cols=104 Identities=9% Similarity=0.086 Sum_probs=65.5
Q ss_pred CCEEEEEECCCcEEEEcC-CCceeEEEecC-CCcEEEEEE--cC-CC-eEEEE-eCCCcEEEEc--CCceeEEEecC---
Q 008510 3 GVGIISASHDCTIRLWAL-TGQVLMEMVGH-TAIVYSIDS--HA-SG-LIVSG-SEDRFAKIWK--DGVCVQSIEHP--- 70 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH-~~~V~~v~~--~p-~g-~l~s~-s~D~tvriWd--~~~~~~~l~h~--- 70 (563)
+..++.++.||.|.-.|. +|+.+.++... ..++....- .+ ++ .++.. ..||.+..++ +|.....+..+
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv 89 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV 89 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence 357889999999999998 89999998764 122222110 11 33 33332 5899999898 55444444321
Q ss_pred --CcEEE-----E----EEccCCcEEEEeCCCcEEEEEcCCCceece
Q 008510 71 --GCVWD-----A----KFLENGDIVTACSDGVTRIWTVHSDKVADS 106 (563)
Q Consensus 71 --~~V~~-----v----~~~p~g~i~sgs~Dg~Irvwd~~~~~~~~~ 106 (563)
.++.. + ..+.+|.+.+|+.+|.+...|.++|+..-.
T Consensus 90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~ 136 (339)
T 2be1_A 90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISA 136 (339)
T ss_dssp TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEE
T ss_pred eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEE
Confidence 12221 0 001344589999999999999999985533
No 341
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=70.25 E-value=80 Score=32.69 Aligned_cols=96 Identities=19% Similarity=0.119 Sum_probs=56.9
Q ss_pred CEEEEEECCCcEEEEcCCCceeEEEecC----CCcEEEEEE-------cCCC-eEEEEeCCC-------cEEEEc---CC
Q 008510 4 VGIISASHDCTIRLWALTGQVLMEMVGH----TAIVYSIDS-------HASG-LIVSGSEDR-------FAKIWK---DG 61 (563)
Q Consensus 4 ~~l~s~s~DgtIrlWd~~g~~i~~l~gH----~~~V~~v~~-------~p~g-~l~s~s~D~-------tvriWd---~~ 61 (563)
+++++....+.|++.|..+..+.++..- ......++| +++| .++.+...+ .|.+.+ ++
T Consensus 153 ~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G 232 (496)
T 3kya_A 153 HLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADG 232 (496)
T ss_dssp EEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTS
T ss_pred EEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCC
Confidence 3444444446688888866555555432 235789999 9998 455554443 255554 22
Q ss_pred cee-----EEEecCCcEEEEEEcc-CCcE-EEEeCCCcEEEEEcC
Q 008510 62 VCV-----QSIEHPGCVWDAKFLE-NGDI-VTACSDGVTRIWTVH 99 (563)
Q Consensus 62 ~~~-----~~l~h~~~V~~v~~~p-~g~i-~sgs~Dg~Irvwd~~ 99 (563)
... +.+..-...+.++++| ++.| ++--.++.|..||+.
T Consensus 233 ~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~ 277 (496)
T 3kya_A 233 TFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLV 277 (496)
T ss_dssp CCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHH
T ss_pred ceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecc
Confidence 332 3333111345678899 4554 555667889999987
No 342
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=68.08 E-value=71 Score=30.22 Aligned_cols=17 Identities=18% Similarity=0.511 Sum_probs=13.9
Q ss_pred EEEEEecccceEEEeCc
Q 008510 160 VAYSWDMKEQKWDKLGE 176 (563)
Q Consensus 160 ~~~~wd~~~~~w~~~g~ 176 (563)
.++.+|..+..|..+..
T Consensus 213 ~~~~yd~~~~~W~~~~~ 229 (315)
T 4asc_A 213 SAEVYSITDNKWAPFEA 229 (315)
T ss_dssp EEEEEETTTTEEEEECC
T ss_pred eEEEEECCCCeEEECCC
Confidence 47789999999998854
No 343
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=67.07 E-value=48 Score=30.72 Aligned_cols=75 Identities=11% Similarity=0.056 Sum_probs=43.6
Q ss_pred hhHHHHHHHhhhhccCCChhHHHHHHHHHHHHHhhhhhcCCchh-hhHHHHHHHHhhhhcccChhHHHHHHHHHhhhhc
Q 008510 444 KNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDEEG-QSHVLSAALEIAEEESIEVDSKYRALVAIGTLML 521 (563)
Q Consensus 444 ~~~~~il~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~~~~~-~~~l~~~~~~~l~~~~~~~Ea~~R~l~AlG~l~~ 521 (563)
.+...++..+.+.+...++.+|-++...+-++.-..... .... ...++..+.+.+.. ..+......|.+|+.++.
T Consensus 100 ~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~-~~~~~l~~ll~~l~~~l~~--k~~~vk~~al~~l~~~~~ 175 (249)
T 2qk1_A 100 DYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPL-ASSGRNEDMLKDILEHMKH--KTPQIRMECTQLFNASMK 175 (249)
T ss_dssp HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTT-CTTCTTHHHHHHHHHHTTC--SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcccc-ccCCcHHHHHHHHHHHHcC--CChHHHHHHHHHHHHHHH
Confidence 445566666666666667888888888887777653210 1100 22455556666642 245555566666666654
No 344
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=66.80 E-value=15 Score=36.13 Aligned_cols=32 Identities=9% Similarity=0.238 Sum_probs=26.6
Q ss_pred CceeecCcccCcEEEEEcCCCCeeeeecCCCC
Q 008510 186 NRPILDGIQYDYVFDVDIGDGEPTRKLPYNRS 217 (563)
Q Consensus 186 ~~~~~~g~~~d~v~~vd~~dg~~~~~~~~n~~ 217 (563)
...+|.|...+.++.++..+|+.+...+....
T Consensus 111 ~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~ 142 (339)
T 2be1_A 111 DEKVYTGSMRTIMYTINMLNGEIISAFGPGSK 142 (339)
T ss_dssp CEEEEECEEEEEEEEEETTTCCEEEEESTTCB
T ss_pred CCEEEEEecCCEEEEEECCCCcEEEEEecCCC
Confidence 45678888888999999999999988876653
No 345
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=66.73 E-value=46 Score=37.68 Aligned_cols=38 Identities=16% Similarity=0.309 Sum_probs=30.1
Q ss_pred cEEEEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeee
Q 008510 72 CVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLEL 109 (563)
Q Consensus 72 ~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~ 109 (563)
.+.+++..++.. +.+-|.|+++|+|++.++++.....+
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL 275 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL 275 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeecc
Confidence 567777777766 78999999999999999987655443
No 346
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=65.69 E-value=53 Score=36.05 Aligned_cols=97 Identities=15% Similarity=0.098 Sum_probs=63.2
Q ss_pred HHHHHHHHHhhcCCCc-----cHHHHHhhHHHHHHHhhhhccCCChhHHHHHHHHHHHHHhhhhh---c-C-Cchhh-hH
Q 008510 422 LLTGIRAVTNLFKNSS-----WYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIE---K-K-DEEGQ-SH 490 (563)
Q Consensus 422 ~ll~lR~l~N~f~~~~-----~~~~~~~~~~~il~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~---~-~-~~~~~-~~ 490 (563)
..=++++|+|+.+.+. .++.+..+ ...+..+...+.+.|..+|.|++-++.|++..-.. . - .+..+ ..
T Consensus 576 ~feAL~ALTNLAs~~~n~~E~~r~~Ii~~-~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~ 654 (778)
T 3opb_A 576 NYEALLALTNLASSETSDGEEVCKHIVST-KVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLR 654 (778)
T ss_dssp HHHHHHHHHHHHHCCSHHHHHHHHHHHHS-HHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHH
T ss_pred HHHHHHHHHHHhcCCcccchHHHHHHHHh-cCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhc
Confidence 4679999999999873 24444432 12445555566678999999999999999963221 1 0 11111 11
Q ss_pred HHHHHHHhhhhcccChhHHHHHHHHHhhhhc
Q 008510 491 VLSAALEIAEEESIEVDSKYRALVAIGTLML 521 (563)
Q Consensus 491 l~~~~~~~l~~~~~~~Ea~~R~l~AlG~l~~ 521 (563)
-+..++.++. .+|.++..-...||+++..
T Consensus 655 rL~lLV~Ll~--s~D~~~r~AAagALAnLts 683 (778)
T 3opb_A 655 NFNILVKLLQ--LSDVESQRAVAAIFANIAT 683 (778)
T ss_dssp HHHHHHHGGG--CSCHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHc--CCCHHHHHHHHHHHHHhcC
Confidence 2445566663 4788888888899999864
No 347
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=65.52 E-value=52 Score=32.45 Aligned_cols=89 Identities=9% Similarity=0.105 Sum_probs=55.2
Q ss_pred CCcEEEEcC--CCc---eeEEEecCC-CcEEEEEEcCCC-eEEEEeC---C------------CcEEEEc--CCceeEEE
Q 008510 12 DCTIRLWAL--TGQ---VLMEMVGHT-AIVYSIDSHASG-LIVSGSE---D------------RFAKIWK--DGVCVQSI 67 (563)
Q Consensus 12 DgtIrlWd~--~g~---~i~~l~gH~-~~V~~v~~~p~g-~l~s~s~---D------------~tvriWd--~~~~~~~l 67 (563)
+.+|-+|++ .+. .+.++.+.. ....++.+.++| ..++..- | ..-++|. .+++....
T Consensus 138 ~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~~~~~~~ 217 (355)
T 3sre_A 138 SSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVA 217 (355)
T ss_dssp CCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTTCCEEEE
T ss_pred CCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECCeEEEee
Confidence 467888877 332 344555533 457899999999 4555431 1 2344554 33322222
Q ss_pred ecCCcEEEEEEccCCc-E-EEEeCCCcEEEEEcCC
Q 008510 68 EHPGCVWDAKFLENGD-I-VTACSDGVTRIWTVHS 100 (563)
Q Consensus 68 ~h~~~V~~v~~~p~g~-i-~sgs~Dg~Irvwd~~~ 100 (563)
..-..-..++|+|||+ + ++-+..+.|..|+++.
T Consensus 218 ~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~ 252 (355)
T 3sre_A 218 EGFDFANGINISPDGKYVYIAELLAHKIHVYEKHA 252 (355)
T ss_dssp EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred cCCcccCcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence 2223678899999997 4 5556678999999874
No 348
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=65.22 E-value=31 Score=36.65 Aligned_cols=65 Identities=6% Similarity=0.008 Sum_probs=44.3
Q ss_pred hhccCCChhHHHHHHHHHHHHHhhhhhcCCchhhhHHHHHHHHhhhhcccChhHHHHHHHHHhhhhc
Q 008510 455 SCYSSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAALEIAEEESIEVDSKYRALVAIGTLML 521 (563)
Q Consensus 455 ~~~~~~~k~~~~a~atl~~N~s~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~Ea~~R~l~AlG~l~~ 521 (563)
..+.+.+..+|..+|..+.|++......+..-.....+..++++|. ..+++......-||++|.+
T Consensus 55 ~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~--s~~~~vq~~Aa~AL~nLa~ 119 (584)
T 3l6x_A 55 AMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLD--HPKKEVHLGACGALKNISF 119 (584)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGG--CSSHHHHHHHHHHHHHHTS
T ss_pred HHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHC--CCCHHHHHHHHHHHHHHHc
Confidence 3345567788888888999998632222111112224566678885 3678999999999999997
No 349
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=64.06 E-value=2.1e+02 Score=33.05 Aligned_cols=92 Identities=13% Similarity=-0.008 Sum_probs=55.6
Q ss_pred EEEEcC-CCceeEEEecCC-CcEEEEEEcCCCeEEEEeCCCcEEEEc--CCce--eEEEecCCcEEEEEEccC------C
Q 008510 15 IRLWAL-TGQVLMEMVGHT-AIVYSIDSHASGLIVSGSEDRFAKIWK--DGVC--VQSIEHPGCVWDAKFLEN------G 82 (563)
Q Consensus 15 IrlWd~-~g~~i~~l~gH~-~~V~~v~~~p~g~l~s~s~D~tvriWd--~~~~--~~~l~h~~~V~~v~~~p~------g 82 (563)
||+.+. .+..+..+.... ..|...+.+.. +++.++ ++.+.++. +++. ......+..|.|+++.|. +
T Consensus 494 Irli~~~~~~~~~~w~~p~~~~I~~As~n~~-~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s 571 (1158)
T 3ei3_A 494 VRLVSQEPKALVSEWKEPQAKNISVASCNSS-QVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLS 571 (1158)
T ss_dssp EEEEESSSCCEEEEECCTTCCCCCEEEECSS-EEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCC
T ss_pred EEEEECCCCeEEEEEECCCCCEEEEEEeCCC-EEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccc
Confidence 566665 234555555332 34665565533 444444 56777776 3432 222235678999999863 2
Q ss_pred c-EEEEeC-CCcEEEEEcCCCceeceee
Q 008510 83 D-IVTACS-DGVTRIWTVHSDKVADSLE 108 (563)
Q Consensus 83 ~-i~sgs~-Dg~Irvwd~~~~~~~~~~~ 108 (563)
+ ++.|+. |++|+|+++.+-+......
T Consensus 572 ~~~aVg~~~d~tv~I~sL~~l~~~~~~~ 599 (1158)
T 3ei3_A 572 PLCAIGLWTDISARILKLPSFELLHKEM 599 (1158)
T ss_dssp SEEEEEETTTTEEEEEETTTCCEEEEEE
T ss_pred cEEEEEECCCCEEEEEECCCCCeEEEEE
Confidence 4 788997 9999999998765443333
No 350
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=63.02 E-value=92 Score=29.84 Aligned_cols=91 Identities=11% Similarity=0.002 Sum_probs=58.1
Q ss_pred CCcEEEEcCCCceeEEEe-cCCCcEEEEEEcCCC--eEEEEeCCCcEEEEc-CCceeEEEe--cCCcEEEEEEccCCcEE
Q 008510 12 DCTIRLWALTGQVLMEMV-GHTAIVYSIDSHASG--LIVSGSEDRFAKIWK-DGVCVQSIE--HPGCVWDAKFLENGDIV 85 (563)
Q Consensus 12 DgtIrlWd~~g~~i~~l~-gH~~~V~~v~~~p~g--~l~s~s~D~tvriWd-~~~~~~~l~--h~~~V~~v~~~p~g~i~ 85 (563)
.+.|...+++|.....+. ..-..-..++++|++ ..++=+..+.|..++ ++...+++. .-.....+++..++-+.
T Consensus 144 ~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~~~lyw 223 (318)
T 3sov_A 144 VPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYW 223 (318)
T ss_dssp SCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEETTEEEE
T ss_pred CCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeCCEEEE
Confidence 466777777776555543 223456899999865 455556667888888 665555554 22345667775332256
Q ss_pred EEeCCCcEEEEEcCCCc
Q 008510 86 TACSDGVTRIWTVHSDK 102 (563)
Q Consensus 86 sgs~Dg~Irvwd~~~~~ 102 (563)
+-...+.|..++..+++
T Consensus 224 td~~~~~V~~~~~~~G~ 240 (318)
T 3sov_A 224 TDWSTHSILACNKYTGE 240 (318)
T ss_dssp EETTTTEEEEEETTTCC
T ss_pred EecCCCeEEEEECCCCC
Confidence 66667888888887765
No 351
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=62.92 E-value=1.1e+02 Score=29.54 Aligned_cols=94 Identities=9% Similarity=-0.049 Sum_probs=62.3
Q ss_pred EECCCcEEEEcCCCceeEEEecCCCcEEEEEEcCC-C-eEEEEeCCCcEEEEc-CCceeEEEe--cCCcEEEEEEccC-C
Q 008510 9 ASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHAS-G-LIVSGSEDRFAKIWK-DGVCVQSIE--HPGCVWDAKFLEN-G 82 (563)
Q Consensus 9 ~s~DgtIrlWd~~g~~i~~l~gH~~~V~~v~~~p~-g-~l~s~s~D~tvriWd-~~~~~~~l~--h~~~V~~v~~~p~-g 82 (563)
-++...|+..++++.....+.........++|++. + .+++-...+.|+.++ .+.....+. .......+++.+. |
T Consensus 49 ~~~~~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g 128 (349)
T 3v64_C 49 FANRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHD 128 (349)
T ss_dssp EECBSCEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTT
T ss_pred eecccceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCC
Confidence 34556688888866544444334456789999975 4 566666778888888 555444443 2235678899874 4
Q ss_pred cE-EEEeCCCcEEEEEcCCCc
Q 008510 83 DI-VTACSDGVTRIWTVHSDK 102 (563)
Q Consensus 83 ~i-~sgs~Dg~Irvwd~~~~~ 102 (563)
.| ++-...+.|.+++.+...
T Consensus 129 ~ly~~d~~~~~I~~~~~dG~~ 149 (349)
T 3v64_C 129 KLYWTDSGTSRIEVANLDGAH 149 (349)
T ss_dssp EEEEEETTTTEEEEEETTSCS
T ss_pred eEEEEcCCCCeEEEEcCCCCc
Confidence 54 555667899999987543
No 352
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=62.04 E-value=42 Score=34.07 Aligned_cols=93 Identities=14% Similarity=0.114 Sum_probs=61.2
Q ss_pred CCCEEEEEECCCcEEEEcCC-Cc------------eeEEEec------CCCcEEEEEEcCCC----eEEEEeCCCcEEEE
Q 008510 2 PGVGIISASHDCTIRLWALT-GQ------------VLMEMVG------HTAIVYSIDSHASG----LIVSGSEDRFAKIW 58 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~~-g~------------~i~~l~g------H~~~V~~v~~~p~g----~l~s~s~D~tvriW 58 (563)
+|+++|..+ +.+|.|-.+. +. ..+++.- +...|..+.|+|-| .+++=-.|++||+|
T Consensus 76 sG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~y 154 (452)
T 3pbp_A 76 SGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMF 154 (452)
T ss_dssp TSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEE
T ss_pred CCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEE
Confidence 467666664 5678887762 21 1223332 35779999999954 68889999999999
Q ss_pred c-CC---ceeEEEec----------CCcEEEEEEccCCc-EEEEe--CCCcEEEE
Q 008510 59 K-DG---VCVQSIEH----------PGCVWDAKFLENGD-IVTAC--SDGVTRIW 96 (563)
Q Consensus 59 d-~~---~~~~~l~h----------~~~V~~v~~~p~g~-i~sgs--~Dg~Irvw 96 (563)
| .. ++. ++.+ -..|.+++|.++|- +...+ .+|-|+-.
T Consensus 155 Dl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 155 DILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp ETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred EcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 9 22 223 4431 14688899988776 65544 67777554
No 353
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=61.81 E-value=1.5e+02 Score=31.55 Aligned_cols=100 Identities=11% Similarity=-0.049 Sum_probs=64.9
Q ss_pred CCEEEEEECCCcEEEEcCCCceeEEEe-cCCCcEEEEEEcCC-C-eEEEE-eCCCcEEEEc-CCceeEEEe--cCCcEEE
Q 008510 3 GVGIISASHDCTIRLWALTGQVLMEMV-GHTAIVYSIDSHAS-G-LIVSG-SEDRFAKIWK-DGVCVQSIE--HPGCVWD 75 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~~g~~i~~l~-gH~~~V~~v~~~p~-g-~l~s~-s~D~tvriWd-~~~~~~~l~--h~~~V~~ 75 (563)
++.+++-...+.|.+.+++|....++. +.-.....+++.|. | .++|- +..+.|...+ +|.....+. .-.....
T Consensus 96 ~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~G 175 (619)
T 3s94_A 96 EKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNG 175 (619)
T ss_dssp TEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEE
T ss_pred CEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcE
Confidence 456666667788999999877665554 34455678999986 5 44543 2233444444 666555554 2236789
Q ss_pred EEEccCC-cE-EEEeCCCcEEEEEcCCCc
Q 008510 76 AKFLENG-DI-VTACSDGVTRIWTVHSDK 102 (563)
Q Consensus 76 v~~~p~g-~i-~sgs~Dg~Irvwd~~~~~ 102 (563)
+++.+++ +| ++-...+.|..+|++...
T Consensus 176 lald~~~~~LY~aD~~~~~I~~~~~dG~~ 204 (619)
T 3s94_A 176 LTLDYEEQKLYWADAKLNFIHKSNLDGTN 204 (619)
T ss_dssp EEEETTTTEEEEEETTTCCEEEESSSCCE
T ss_pred EEEEccCCEEEEEeCCCCeEEEecCCCCc
Confidence 9999864 45 455566789999987543
No 354
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=60.48 E-value=43 Score=31.74 Aligned_cols=17 Identities=12% Similarity=0.436 Sum_probs=13.7
Q ss_pred EEEEEecccceEEEeCc
Q 008510 160 VAYSWDMKEQKWDKLGE 176 (563)
Q Consensus 160 ~~~~wd~~~~~w~~~g~ 176 (563)
.++.+|..+..|..+..
T Consensus 232 ~v~~yd~~~~~W~~~~~ 248 (308)
T 1zgk_A 232 SVERYDVETETWTFVAP 248 (308)
T ss_dssp CEEEEETTTTEEEECCC
T ss_pred eEEEEeCCCCcEEECCC
Confidence 37789999999998753
No 355
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=59.08 E-value=88 Score=30.55 Aligned_cols=84 Identities=14% Similarity=0.103 Sum_probs=47.1
Q ss_pred CCEEEEEECCCcEEEEcCCCc-eeEEEe---cCCCcEEEEEEcCC----C-eEEEEeC---C----CcEEEEc-CCc---
Q 008510 3 GVGIISASHDCTIRLWALTGQ-VLMEMV---GHTAIVYSIDSHAS----G-LIVSGSE---D----RFAKIWK-DGV--- 62 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~~g~-~i~~l~---gH~~~V~~v~~~p~----g-~l~s~s~---D----~tvriWd-~~~--- 62 (563)
|+ ++.+..+|.|++++.+|+ .+..+. ........|+++|+ + ..++-+. + ..|..|+ ++.
T Consensus 40 G~-l~V~e~~g~I~~~d~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~ 118 (354)
T 3a9g_A 40 GR-YLVTERPGRLVLISPSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFK 118 (354)
T ss_dssp TE-EEEEETTTEEEEECSSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCC
T ss_pred Ce-EEEEeCCCEEEEEeCCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcC
Confidence 44 555666799999987665 222221 12356789999997 5 4444332 3 4565666 332
Q ss_pred e--e----EEEe--cCCcEEEEEEccCCcEEEE
Q 008510 63 C--V----QSIE--HPGCVWDAKFLENGDIVTA 87 (563)
Q Consensus 63 ~--~----~~l~--h~~~V~~v~~~p~g~i~sg 87 (563)
. . ..+. .......++|.|+|.|..+
T Consensus 119 ~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt 151 (354)
T 3a9g_A 119 LKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYIT 151 (354)
T ss_dssp EEEEEEEEEEEECCSSCCCCCEEECTTSCEEEE
T ss_pred cCccEEEEEcCCCCCCcCCceEEECCCCcEEEE
Confidence 1 1 1122 1123467899999985433
No 356
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=58.24 E-value=84 Score=33.45 Aligned_cols=54 Identities=4% Similarity=-0.075 Sum_probs=39.7
Q ss_pred CCcchHHHHHHHHHhhcCCCccHHHHHhhHHHHHHHhhhhccCCChhHHHHHHHHHHHHHhh
Q 008510 417 TLPANLLTGIRAVTNLFKNSSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVL 478 (563)
Q Consensus 417 ~~~~~~ll~lR~l~N~f~~~~~~~~~~~~~~~il~~~~~~~~~~~k~~~~a~atl~~N~s~~ 478 (563)
.++..+.+++|++||+-.. .+ .+.++..+..++.+.+..+|-+++-.++++.-.
T Consensus 119 ~n~~vr~lAL~~L~~i~~~----~~----~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~ 172 (618)
T 1w63_A 119 STQFVQGLALCTLGCMGSS----EM----CRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRK 172 (618)
T ss_dssp SSSHHHHHHHHHHHHHCCH----HH----HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHH
T ss_pred CCHhHHHHHHHHHHhcCCH----HH----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 4667789999999999732 22 234555555666678899999999999998753
No 357
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=57.33 E-value=1.1e+02 Score=28.94 Aligned_cols=17 Identities=29% Similarity=0.708 Sum_probs=13.6
Q ss_pred EEEEEecccceEEEeCc
Q 008510 160 VAYSWDMKEQKWDKLGE 176 (563)
Q Consensus 160 ~~~~wd~~~~~w~~~g~ 176 (563)
.++.+|..+..|..+..
T Consensus 223 ~~~~yd~~~~~W~~~~~ 239 (318)
T 2woz_A 223 SVEAFDLKTNKWEVMTE 239 (318)
T ss_dssp EEEEEETTTCCEEECCC
T ss_pred eEEEEECCCCeEEECCC
Confidence 36788999999998754
No 358
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=56.87 E-value=37 Score=38.53 Aligned_cols=35 Identities=26% Similarity=0.262 Sum_probs=29.0
Q ss_pred cEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe
Q 008510 34 IVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE 68 (563)
Q Consensus 34 ~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~ 68 (563)
.+.+++..++. .+++-+.|+++|+|+ +++|+.+..
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 46677777776 888999999999999 888888764
No 359
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=56.82 E-value=42 Score=35.59 Aligned_cols=92 Identities=8% Similarity=0.087 Sum_probs=57.6
Q ss_pred CCcchHHHHHHHHHhhcCCCccHHHHHhhHHHHHHHhhhhccCCChhHHHHHHHHHHHHHhhhhhcCCchhhhHHHHHHH
Q 008510 417 TLPANLLTGIRAVTNLFKNSSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAAL 496 (563)
Q Consensus 417 ~~~~~~ll~lR~l~N~f~~~~~~~~~~~~~~~il~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~~~~~~~~l~~~~~ 496 (563)
.++..+-+++|++||+-.... .+.++..+..++.+.+..+|-+++..+.++.-. .++.-....++..+.
T Consensus 98 ~n~~ir~~AL~~L~~i~~~~~--------~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~---~p~~~~~~~~~~~l~ 166 (591)
T 2vgl_B 98 PNPLIRALAVRTMGCIRVDKI--------TEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDI---NAQMVEDQGFLDSLR 166 (591)
T ss_dssp SSHHHHHHHHHHHHTCCSGGG--------HHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHS---SCCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCChHHH--------HHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhh---ChhhcccccHHHHHH
Confidence 456778999999999862221 223344455556678999999999999987642 122111123445555
Q ss_pred HhhhhcccChhHHHHHHHHHhhhhc
Q 008510 497 EIAEEESIEVDSKYRALVAIGTLML 521 (563)
Q Consensus 497 ~~l~~~~~~~Ea~~R~l~AlG~l~~ 521 (563)
+++. ..|+....-.+.||+.+..
T Consensus 167 ~lL~--d~d~~V~~~A~~aL~~i~~ 189 (591)
T 2vgl_B 167 DLIA--DSNPMVVANAVAALSEISE 189 (591)
T ss_dssp HTTS--CSCHHHHHHHHHHHHHHTT
T ss_pred HHhC--CCChhHHHHHHHHHHHHHh
Confidence 6663 3566677777777777654
No 360
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=55.73 E-value=1.6e+02 Score=29.07 Aligned_cols=96 Identities=11% Similarity=0.063 Sum_probs=63.2
Q ss_pred EEEECCCcEEEEcCCCceeEEEecCCCcEEEEEEcCC-C-eEEEEeCCCcEEEEc-CC----ceeEEE-e-cCCcEEEEE
Q 008510 7 ISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHAS-G-LIVSGSEDRFAKIWK-DG----VCVQSI-E-HPGCVWDAK 77 (563)
Q Consensus 7 ~s~s~DgtIrlWd~~g~~i~~l~gH~~~V~~v~~~p~-g-~l~s~s~D~tvriWd-~~----~~~~~l-~-h~~~V~~v~ 77 (563)
+.-++...|+..++++.....+......+..++|++. + .+++-...+.|+.++ .+ ....++ . .......++
T Consensus 86 ll~~~~~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~gla 165 (400)
T 3p5b_L 86 LFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLA 165 (400)
T ss_dssp EEEEETTEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEE
T ss_pred eEEeccceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEE
Confidence 3344567899999955544444445677899999985 4 566666678888888 44 222333 3 334788999
Q ss_pred Ecc-CCcE-EEEeCCCcEEEEEcCCCc
Q 008510 78 FLE-NGDI-VTACSDGVTRIWTVHSDK 102 (563)
Q Consensus 78 ~~p-~g~i-~sgs~Dg~Irvwd~~~~~ 102 (563)
+.+ .+.| ++-...+.|.+.+++...
T Consensus 166 vD~~~~~lY~~d~~~~~I~~~~~~g~~ 192 (400)
T 3p5b_L 166 VDWIHSNIYWTDSVLGTVSVADTKGVK 192 (400)
T ss_dssp EETTTTEEEEEETTTTEEEEECTTTCS
T ss_pred EEecCCceEEEECCCCeEEEEeCCCCc
Confidence 988 4555 555667889999987654
No 361
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=55.67 E-value=1e+02 Score=27.89 Aligned_cols=71 Identities=10% Similarity=0.029 Sum_probs=46.4
Q ss_pred HHhhHHHHHHHhhhhccCCChhHHHHHHHHHHHHHhhhhhcCCchhhhHHHHHHHHhhhhcccChhHHHHHHHHHhhhhc
Q 008510 442 LQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAALEIAEEESIEVDSKYRALVAIGTLML 521 (563)
Q Consensus 442 ~~~~~~~il~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~Ea~~R~l~AlG~l~~ 521 (563)
+..+...++..+...+...+..+|.++...+.++.-.. ....++..+.+.+. ..++.+..-.+-.|+.++.
T Consensus 92 ~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~-------~~~~ll~~l~~~l~--~~~~~vr~~~l~~l~~~l~ 162 (242)
T 2qk2_A 92 FSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYAST-------SLEAQQESIVESLS--NKNPSVKSETALFIARALT 162 (242)
T ss_dssp GHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTS-------CHHHHHHHHHHHTT--CSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHc--CCChHHHHHHHHHHHHHHH
Confidence 34556778888888877788899999999999886532 12234555555553 2355666666666666543
No 362
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=54.91 E-value=1.4e+02 Score=30.12 Aligned_cols=65 Identities=5% Similarity=-0.007 Sum_probs=40.1
Q ss_pred EEEEEE---------cCCC-eEEEEeCCCcEEEEc-CCceeEEEecC------------------CcEEEEEEc-cCCcE
Q 008510 35 VYSIDS---------HASG-LIVSGSEDRFAKIWK-DGVCVQSIEHP------------------GCVWDAKFL-ENGDI 84 (563)
Q Consensus 35 V~~v~~---------~p~g-~l~s~s~D~tvriWd-~~~~~~~l~h~------------------~~V~~v~~~-p~g~i 84 (563)
-..+++ .++| .+++-...+.|+.++ ++......... ..-+.|++. ++|.|
T Consensus 337 P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~l 416 (433)
T 4hw6_A 337 PNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTPEGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCF 416 (433)
T ss_dssp EEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECTTSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEE
T ss_pred CccEEEEccccccccCCCCcEEEEECCCCEEEEECCCCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEE
Confidence 566888 6667 566656667899998 66433222110 136778888 56774
Q ss_pred -EEEeCCCcEEEEEcC
Q 008510 85 -VTACSDGVTRIWTVH 99 (563)
Q Consensus 85 -~sgs~Dg~Irvwd~~ 99 (563)
++-...+.||.++++
T Consensus 417 yVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 417 YIGDCDNHRVRKIAPE 432 (433)
T ss_dssp EEEEGGGTEEEEEEEC
T ss_pred EEEeCCCCEEEEEecC
Confidence 444455677777654
No 363
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=53.44 E-value=86 Score=30.61 Aligned_cols=78 Identities=10% Similarity=0.050 Sum_probs=49.0
Q ss_pred eeEEEecCCCcEEEEEEcCCCeEEEEeCCCcEEEEc-CCc-eeEEEe----cCCcEEEEEEccC----CcEEEEeC----
Q 008510 24 VLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWK-DGV-CVQSIE----HPGCVWDAKFLEN----GDIVTACS---- 89 (563)
Q Consensus 24 ~i~~l~gH~~~V~~v~~~p~g~l~s~s~D~tvriWd-~~~-~~~~l~----h~~~V~~v~~~p~----g~i~sgs~---- 89 (563)
.+..+...-..-..++|.|+|.+..+..++.|++++ +++ .+..+. .......|+++|+ +.|..+..
T Consensus 20 ~~~~va~~l~~P~~ia~~pdG~l~V~e~~g~I~~~d~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~ 99 (354)
T 3a9g_A 20 KISEVASDLEVPWSIAPLGGGRYLVTERPGRLVLISPSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAE 99 (354)
T ss_dssp EEEEEECSCSCEEEEEEEETTEEEEEETTTEEEEECSSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECG
T ss_pred EEEEEeCCCCCCeEEEEcCCCeEEEEeCCCEEEEEeCCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCC
Confidence 334444334567899999999555556679999998 665 222221 1246889999997 56543332
Q ss_pred C----CcEEEEEcCCC
Q 008510 90 D----GVTRIWTVHSD 101 (563)
Q Consensus 90 D----g~Irvwd~~~~ 101 (563)
+ +.|..|+....
T Consensus 100 ~~~~~~~v~r~~~~~~ 115 (354)
T 3a9g_A 100 GGHIRNRVIRGRLDGS 115 (354)
T ss_dssp GGCEEEEEEEEEECSS
T ss_pred CCCcceEEEEEEECCC
Confidence 3 56777776644
No 364
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=53.40 E-value=2.6e+02 Score=30.72 Aligned_cols=96 Identities=13% Similarity=0.024 Sum_probs=62.1
Q ss_pred EEEECCCcEEEEcCCCceeEEEecCCCcEEEEEEcCC-C-eEEEEeCCCcEEEEc-CCc-----eeEEEe-cCCcEEEEE
Q 008510 7 ISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHAS-G-LIVSGSEDRFAKIWK-DGV-----CVQSIE-HPGCVWDAK 77 (563)
Q Consensus 7 ~s~s~DgtIrlWd~~g~~i~~l~gH~~~V~~v~~~p~-g-~l~s~s~D~tvriWd-~~~-----~~~~l~-h~~~V~~v~ 77 (563)
+-.++...|+..++.+.....+......+..++|.+. + .+++-...+.|+.++ .+. ....+. .-.....|+
T Consensus 398 Ll~an~~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLA 477 (791)
T 3m0c_C 398 LFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLA 477 (791)
T ss_dssp EEEECBSSEEEECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEE
T ss_pred cccccccceeEeeccCCcceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceee
Confidence 3445567788888854433444445567789999984 4 566666678888888 442 222333 234677899
Q ss_pred EccCCc-E-EEEeCCCcEEEEEcCCCc
Q 008510 78 FLENGD-I-VTACSDGVTRIWTVHSDK 102 (563)
Q Consensus 78 ~~p~g~-i-~sgs~Dg~Irvwd~~~~~ 102 (563)
+.+.+. | ++-...+.|++.+++...
T Consensus 478 vD~~~~~LY~tD~~~~~I~v~~ldG~~ 504 (791)
T 3m0c_C 478 VDWIHSNIYWTDSVLGTVSVADTKGVK 504 (791)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSSS
T ss_pred eeecCCcEEEEecCCCeEEEEeCCCCe
Confidence 988664 4 566667899999988654
No 365
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=52.80 E-value=1.8e+02 Score=31.33 Aligned_cols=71 Identities=10% Similarity=0.133 Sum_probs=50.6
Q ss_pred HHHHHHhhcCCCCCcchHHHHHHHHHhhcCCCccHHHHHhhHHHHHHHhhhhccCCChhHHHHHHHHHHHHHhh
Q 008510 405 LMEMIEKVSSNPTLPANLLTGIRAVTNLFKNSSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVL 478 (563)
Q Consensus 405 ~~~~l~~~~~~~~~~~~~ll~lR~l~N~f~~~~~~~~~~~~~~~il~~~~~~~~~~~k~~~~a~atl~~N~s~~ 478 (563)
+..++..+.+ +.+.-+..++..++|+...+..+..+.. ..-|...+...+..++..+|.+++.++=|++..
T Consensus 36 i~Pll~~L~S--~~~~~r~~A~~al~~l~~~~~~~~l~~~-~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~ 106 (684)
T 4gmo_A 36 ILPVLKDLKS--PDAKSRTTAAGAIANIVQDAKCRKLLLR-EQVVHIVLTETLTDNNIDSRAAGWEILKVLAQE 106 (684)
T ss_dssp THHHHHHHSS--SCCSHHHHHHHHHHHHTTSHHHHHHHHH-TTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCC--CCHHHHHHHHHHHHHHHcCcHHHHHHHH-cCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 3445554433 2456689999999999987777776654 233334455667778999999999999999875
No 366
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=52.60 E-value=1.9e+02 Score=30.84 Aligned_cols=99 Identities=11% Similarity=0.031 Sum_probs=65.4
Q ss_pred CCEEEEEECCCcEEEEcCCCceeEEEe-cCCCcEEEEEEcC-CC-eEEEEeCCCcEEEEc---CCceeEEEec--CCcEE
Q 008510 3 GVGIISASHDCTIRLWALTGQVLMEMV-GHTAIVYSIDSHA-SG-LIVSGSEDRFAKIWK---DGVCVQSIEH--PGCVW 74 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~~g~~i~~l~-gH~~~V~~v~~~p-~g-~l~s~s~D~tvriWd---~~~~~~~l~h--~~~V~ 74 (563)
++.+++.+..+.|.+.+++|+..+++. +......++++.| .| .++|-.....-+||. +|.....+-. -....
T Consensus 401 ~nLY~td~~~~~I~v~~~~G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~~l~~~~l~~P~ 480 (628)
T 4a0p_A 401 RYIYWTCEATNVINVTRLDGRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLFFSGLSKPI 480 (628)
T ss_dssp TEEEEEETTTTEEEEEETTSCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCEEEECSSCSCEE
T ss_pred CeEEEEcCCCCEEEEEECCCCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcEEEEeccCCCcc
Confidence 345667777788888888887766654 3456789999999 57 555543333235555 6766665542 23678
Q ss_pred EEEEccCCc-EEEE-eCCCcEEEEEcCCC
Q 008510 75 DAKFLENGD-IVTA-CSDGVTRIWTVHSD 101 (563)
Q Consensus 75 ~v~~~p~g~-i~sg-s~Dg~Irvwd~~~~ 101 (563)
.+++.+.+. |..+ +..+.|..++++..
T Consensus 481 gla~D~~~~~LYw~D~~~~~I~~~~~dG~ 509 (628)
T 4a0p_A 481 ALALDSRLGKLFWADSDLRRIESSDLSGA 509 (628)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred EEEEeCCCCEEEEEeCCCCEEEEEeCCCC
Confidence 899998654 6444 44578888888643
No 367
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=51.01 E-value=64 Score=35.04 Aligned_cols=95 Identities=6% Similarity=-0.167 Sum_probs=52.1
Q ss_pred EEEEECCCcEEEEcCCC----ce-eEEEecCCCcEEEEEEcCC-C-eEEEEeCCCcEEEEc-CCceeEEEec--CCcEEE
Q 008510 6 IISASHDCTIRLWALTG----QV-LMEMVGHTAIVYSIDSHAS-G-LIVSGSEDRFAKIWK-DGVCVQSIEH--PGCVWD 75 (563)
Q Consensus 6 l~s~s~DgtIrlWd~~g----~~-i~~l~gH~~~V~~v~~~p~-g-~l~s~s~D~tvriWd-~~~~~~~l~h--~~~V~~ 75 (563)
+++-...+.|+.+++.+ .. ...+.........+++.+. + .+++-...+.|.+.+ .+....++.. -.....
T Consensus 421 y~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~g 500 (699)
T 1n7d_A 421 YWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRA 500 (699)
T ss_dssp EECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCC
T ss_pred EEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcce
Confidence 33333456677776643 11 1111111123456777754 4 555656678899999 6666555542 235677
Q ss_pred EEEccCC-cEEEEe-CC-CcEEEEEcCC
Q 008510 76 AKFLENG-DIVTAC-SD-GVTRIWTVHS 100 (563)
Q Consensus 76 v~~~p~g-~i~sgs-~D-g~Irvwd~~~ 100 (563)
+++.|.+ .|.... .. +.|.++++..
T Consensus 501 iavDp~~g~ly~td~~~~~~I~~~~~dG 528 (699)
T 1n7d_A 501 IVVDPVHGFMYWTDWGTPAKIKKGGLNG 528 (699)
T ss_dssp EECCSSSSCCEECCCSSSCCEEBCCSSS
T ss_pred EEEccCCCcEEEcccCCCCeEEEEeCCC
Confidence 8898854 443332 22 6788777654
No 368
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=50.10 E-value=1.6e+02 Score=27.26 Aligned_cols=95 Identities=9% Similarity=0.050 Sum_probs=66.4
Q ss_pred HHHHHHHHHhhcCCCccHHHHH-----------hhHHHHHHHhhhhccCCChhHHHHHHHHHHHHHhhhhhcCCchhhhH
Q 008510 422 LLTGIRAVTNLFKNSSWYSWLQ-----------KNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSH 490 (563)
Q Consensus 422 ~ll~lR~l~N~f~~~~~~~~~~-----------~~~~~il~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~~~~~~~~ 490 (563)
.--...++.++...+.+.-+.. +....+.+.+.+.+.|.|..++.|+-+++.|++..-...+. ...
T Consensus 113 y~Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i---~~~ 189 (265)
T 3b2a_A 113 FLKAAKTLVSLLESPDDMMRIETIDVLSKLQPLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGH---LTL 189 (265)
T ss_dssp HHHHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCC---GGG
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHhCcCCcccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHH---HHH
Confidence 3667888999998666544331 11366777777777888999999999999999876433222 223
Q ss_pred HHHHHHHhhhhcccChhHHHHHHHHHhhhhc
Q 008510 491 VLSAALEIAEEESIEVDSKYRALVAIGTLML 521 (563)
Q Consensus 491 l~~~~~~~l~~~~~~~Ea~~R~l~AlG~l~~ 521 (563)
++..+-+++. .+|++.+-|.|-++-.+++
T Consensus 190 I~~eI~elL~--~eD~~l~e~aLd~Le~ils 218 (265)
T 3b2a_A 190 ILDEIPSLLQ--NDNEFIVELALDVLEKALS 218 (265)
T ss_dssp TTTTHHHHHT--CSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHHHHHHc
Confidence 3444556664 3488999999998888887
No 369
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=49.00 E-value=2.7e+02 Score=29.58 Aligned_cols=100 Identities=10% Similarity=-0.029 Sum_probs=65.0
Q ss_pred CCEEEEEECCCcEEEEcCCCceeEEEe-cCCCcEEEEEEcCC-C-eEEEE-eCCCcEEEEc-CCceeEEEe-cCCcEEEE
Q 008510 3 GVGIISASHDCTIRLWALTGQVLMEMV-GHTAIVYSIDSHAS-G-LIVSG-SEDRFAKIWK-DGVCVQSIE-HPGCVWDA 76 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~~g~~i~~l~-gH~~~V~~v~~~p~-g-~l~s~-s~D~tvriWd-~~~~~~~l~-h~~~V~~v 76 (563)
++.+++-...+.|.+.+++|.....+. ..-..-..+++.|. | .+++- +..+.|...+ +|.....+. .-.....+
T Consensus 92 ~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~~~~~P~Gl 171 (628)
T 4a0p_A 92 KNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPNVGRANGL 171 (628)
T ss_dssp TEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSCSSEEEE
T ss_pred CEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEECCCCCcceE
Confidence 455566666778888888776555543 34456789999984 5 44443 2244555555 666555554 33467889
Q ss_pred EEccCCc-E-EEEeCCCcEEEEEcCCCc
Q 008510 77 KFLENGD-I-VTACSDGVTRIWTVHSDK 102 (563)
Q Consensus 77 ~~~p~g~-i-~sgs~Dg~Irvwd~~~~~ 102 (563)
++.+++. | ++-...+.|..+|++...
T Consensus 172 alD~~~~~LY~aD~~~~~I~~~d~dG~~ 199 (628)
T 4a0p_A 172 TIDYAKRRLYWTDLDTNLIESSNMLGLN 199 (628)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred EEccccCEEEEEECCCCEEEEEcCCCCc
Confidence 9999654 5 454567889999987643
No 370
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=47.19 E-value=1.9e+02 Score=27.88 Aligned_cols=77 Identities=6% Similarity=0.093 Sum_probs=47.2
Q ss_pred eEEEecCCCcEEEEEEcCCCeEEEEeCCCcEEEEcCCc--eeEEEe----cCCcEEEEEEccC----CcEEEE-eCC---
Q 008510 25 LMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWKDGV--CVQSIE----HPGCVWDAKFLEN----GDIVTA-CSD--- 90 (563)
Q Consensus 25 i~~l~gH~~~V~~v~~~p~g~l~s~s~D~tvriWd~~~--~~~~l~----h~~~V~~v~~~p~----g~i~sg-s~D--- 90 (563)
+..+...-..-..++|.|+|.+..+..++.|+++++++ .+..+. .......++++|+ +.+..+ ...
T Consensus 23 ~~~va~~l~~P~~ia~~pdG~l~V~e~~g~I~~i~~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~ 102 (352)
T 2ism_A 23 VEEVVGGLEVPWALAFLPDGGMLIAERPGRIRLFREGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGG 102 (352)
T ss_dssp EEEEECCCSCEEEEEECTTSCEEEEETTTEEEEEETTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTS
T ss_pred EEEEECCCCCceEEEEcCCCeEEEEeCCCeEEEEECCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCC
Confidence 33444334456899999999444455679999998333 222221 1347889999997 554333 322
Q ss_pred --CcEEEEEcCCC
Q 008510 91 --GVTRIWTVHSD 101 (563)
Q Consensus 91 --g~Irvwd~~~~ 101 (563)
+.|..|+...+
T Consensus 103 ~~~~v~r~~~~~~ 115 (352)
T 2ism_A 103 LRNQVVRLRHLGE 115 (352)
T ss_dssp SEEEEEEEEECSS
T ss_pred CccEEEEEEeCCC
Confidence 56777777644
No 371
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=45.98 E-value=1.3e+02 Score=34.72 Aligned_cols=56 Identities=14% Similarity=0.117 Sum_probs=34.5
Q ss_pred eEEEEeCCCcEEEEc---CCceeEEEe---cCCcEEEEEEccCCcEEEEeCCCcEEEEEcCC
Q 008510 45 LIVSGSEDRFAKIWK---DGVCVQSIE---HPGCVWDAKFLENGDIVTACSDGVTRIWTVHS 100 (563)
Q Consensus 45 ~l~s~s~D~tvriWd---~~~~~~~l~---h~~~V~~v~~~p~g~i~sgs~Dg~Irvwd~~~ 100 (563)
.++.|..-+.|.+.. ....+..+. ++..+.++.+..++.++.+..+|.+.++....
T Consensus 938 ~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D~~~~~vta~~~ld~~t~l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 938 FILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQKDS 999 (1158)
T ss_dssp EEEEEESSBCEEEEEEETTTTEEEEEEECCSCBCEEEEEEEETTEEEEEETTSEEEEEEECT
T ss_pred EEEEEEhhheEEEEEEEcCCCeEEEEEeecccccEEEEEEEccCcEEEEcCCCcEEEEecCC
Confidence 666666666666554 333344443 45567777777665577777777777776654
No 372
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=44.36 E-value=41 Score=30.93 Aligned_cols=92 Identities=10% Similarity=-0.106 Sum_probs=53.7
Q ss_pred CEEEEEECCCcEEEEcC-CCc------eeEEEecC--CCcEEEEEEcCCCeEEEEeCCCcEEEEc--CCc------eeEE
Q 008510 4 VGIISASHDCTIRLWAL-TGQ------VLMEMVGH--TAIVYSIDSHASGLIVSGSEDRFAKIWK--DGV------CVQS 66 (563)
Q Consensus 4 ~~l~s~s~DgtIrlWd~-~g~------~i~~l~gH--~~~V~~v~~~p~g~l~s~s~D~tvriWd--~~~------~~~~ 66 (563)
..|+...+| +++.=.. ++. ...++ |+ =..+.+++|+|+|.|... .++.+.--+ +.. .-..
T Consensus 5 ~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~i-G~~gw~~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~ 81 (236)
T 1tl2_A 5 SMLRGVYQD-KFYQGTYPQNKNDNWLARATLI-GKGGWSNFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGRAKK 81 (236)
T ss_dssp CCEEEEETT-EEEEESCCCSTTCCHHHHSEEE-ESSSCTTCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHCEE
T ss_pred eEEEEEeCC-cEEecCCCCCcccchhhhcccc-CccccccceeEEECCCccEEEE-eCCeEEEECCCCCCcccccccccE
Confidence 457777778 7776665 333 22232 33 236779999999944444 556543333 211 1122
Q ss_pred EecCC--cEEEEEEccCCcEEEEeCCCcEEEEEcC
Q 008510 67 IEHPG--CVWDAKFLENGDIVTACSDGVTRIWTVH 99 (563)
Q Consensus 67 l~h~~--~V~~v~~~p~g~i~sgs~Dg~Irvwd~~ 99 (563)
+...+ ...++.|.|+|.+..+ .||.|+-++.-
T Consensus 82 IG~~Gw~~F~a~~fD~~G~LYav-~dG~iyr~~pP 115 (236)
T 1tl2_A 82 IGNGGWNQFQFLFFDPNGYLYAV-SKDKLYKASPP 115 (236)
T ss_dssp EECSCGGGCSEEEECTTSCEEEE-ETTEEEEESCC
T ss_pred ecccccccceEEEECCCCCEEEe-CCCEEEEeCCC
Confidence 22111 2478999999997666 67998877753
No 373
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=42.73 E-value=2.4e+02 Score=27.20 Aligned_cols=84 Identities=15% Similarity=0.182 Sum_probs=47.0
Q ss_pred CCCEEEEEECCCcEEEEcCCCce--eEEEe---cCCCcEEEEEEcCC----C-eEEEEeCC-----CcEEEEc-CCc---
Q 008510 2 PGVGIISASHDCTIRLWALTGQV--LMEMV---GHTAIVYSIDSHAS----G-LIVSGSED-----RFAKIWK-DGV--- 62 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~~g~~--i~~l~---gH~~~V~~v~~~p~----g-~l~s~s~D-----~tvriWd-~~~--- 62 (563)
+|+ ++.+..+|.|++++ +|+. +..+. ........++++|+ + ..++-..+ ..|..|+ ++.
T Consensus 41 dG~-l~V~e~~g~I~~i~-~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~ 118 (352)
T 2ism_A 41 DGG-MLIAERPGRIRLFR-EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGV 118 (352)
T ss_dssp TSC-EEEEETTTEEEEEE-TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEE
T ss_pred CCe-EEEEeCCCeEEEEE-CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcC
Confidence 355 44556679999988 5542 22211 12356789999998 4 44443332 4566666 432
Q ss_pred ----eeEEEec-C---CcEEEEEEccCCcEEEE
Q 008510 63 ----CVQSIEH-P---GCVWDAKFLENGDIVTA 87 (563)
Q Consensus 63 ----~~~~l~h-~---~~V~~v~~~p~g~i~sg 87 (563)
.+..+.. . .....++|.|+|.+..+
T Consensus 119 ~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~ 151 (352)
T 2ism_A 119 LDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVT 151 (352)
T ss_dssp EEEEEEEEECCCTTCCCCCCCEEECTTSCEEEE
T ss_pred ceEEEEEeCCCCCCCCcCCceEEECCCCCEEEE
Confidence 1111221 1 13468999999995443
No 374
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=42.58 E-value=2.9e+02 Score=29.64 Aligned_cols=102 Identities=11% Similarity=0.076 Sum_probs=53.2
Q ss_pred CCCEEEEEECC----CcEEEEcC-CCceeEEEe-c------CCCc-EEEEEEcC-CC-eEEEEeCCC------cEEEEc-
Q 008510 2 PGVGIISASHD----CTIRLWAL-TGQVLMEMV-G------HTAI-VYSIDSHA-SG-LIVSGSEDR------FAKIWK- 59 (563)
Q Consensus 2 ~g~~l~s~s~D----gtIrlWd~-~g~~i~~l~-g------H~~~-V~~v~~~p-~g-~l~s~s~D~------tvriWd- 59 (563)
++..++.||.+ ..+.+||. +++ ...+. . .... -.+++..+ ++ .++.||.++ .+.+||
T Consensus 397 ~~~iyv~GG~~~~~~~~v~~yd~~~~~-W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 397 GNDVFYMGGSNPYRVNEILQLSIHYDK-IDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp SSCEEEECCBSSSBCCCEEEEEECSSC-EEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred CCEEEEECCCCCCCcCcEEEEECCCCe-EEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 45666777653 35777787 433 22222 1 1111 12334443 56 667776543 466777
Q ss_pred CCceeEEEe---cCCcEEEEEEccCCc-EEEEeCCC--cEEEEEcCCCcee
Q 008510 60 DGVCVQSIE---HPGCVWDAKFLENGD-IVTACSDG--VTRIWTVHSDKVA 104 (563)
Q Consensus 60 ~~~~~~~l~---h~~~V~~v~~~p~g~-i~sgs~Dg--~Irvwd~~~~~~~ 104 (563)
....-..+. .+..-.+++...+|. ++.||.++ .+.+||..+.+..
T Consensus 476 ~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~ 526 (695)
T 2zwa_A 476 KTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFK 526 (695)
T ss_dssp TTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEE
T ss_pred CCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceE
Confidence 322222222 233333444434667 57777654 6899999887654
No 375
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=41.75 E-value=2.5e+02 Score=27.22 Aligned_cols=111 Identities=13% Similarity=0.052 Sum_probs=68.8
Q ss_pred HHHHHHHhcCCCCCccchhcHHHHhhcCCCchhhhhhcccchhhHHHHHHHhhcCCCCCcchHHHHHHHHHhhcCCCccH
Q 008510 360 SLLLKLLKTWPPAMIFPVIDILRMTILHPDGASLLLKHVENQNDVLMEMIEKVSSNPTLPANLLTGIRAVTNLFKNSSWY 439 (563)
Q Consensus 360 ~~l~~~l~~Wp~~~~fP~lDL~Rl~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~lR~l~N~f~~~~~~ 439 (563)
+++.++...=..+.+.-++.|-++...++.++.-|. ...+..+ ++..+... ....+--+||.|-++..+..|.
T Consensus 122 ~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI--~~~GL~~---Li~vi~~~--~gN~q~Y~L~AL~~LM~~v~Gm 194 (339)
T 3dad_A 122 AILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFV--HSEGLSC---LIRVGAAA--DHNYQSYILRALGQLMLFVDGM 194 (339)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHH--HTTHHHH---HHHHHTTS--CHHHHHHHHHHHHHHTTSHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHH--HhccHHH---HHHHHHhc--ChHHHHHHHHHHHHHHhccccc
Confidence 334444433333445556666666667888877775 2334344 44433332 3455788999999999999998
Q ss_pred HHHHhhHHHHHHHhhhhccCCChhHHHHHHHHHHHHHhh
Q 008510 440 SWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVL 478 (563)
Q Consensus 440 ~~~~~~~~~il~~~~~~~~~~~k~~~~a~atl~~N~s~~ 478 (563)
.-+.++ ...+..+.....+...++--.+-.+++++..+
T Consensus 195 ~gvvs~-~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~ 232 (339)
T 3dad_A 195 LGVVAH-SDTIQWLYTLCASLSRLVVKTALKLLLVFVEY 232 (339)
T ss_dssp HHHHHC-HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred cchhCC-HHHHHHHHHHHcCccHHHHHHHHHHHHHHHcc
Confidence 777765 34444555555566777766666777777655
No 376
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=40.01 E-value=1.5e+02 Score=29.02 Aligned_cols=60 Identities=8% Similarity=0.103 Sum_probs=39.0
Q ss_pred EecCCCcEEEEEEcCCC--eEEEEeCCCcEEEEc-C--Cce--eEEEecCCcEEEEEEcc-CCcEEEE
Q 008510 28 MVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK-D--GVC--VQSIEHPGCVWDAKFLE-NGDIVTA 87 (563)
Q Consensus 28 l~gH~~~V~~v~~~p~g--~l~s~s~D~tvriWd-~--~~~--~~~l~h~~~V~~v~~~p-~g~i~sg 87 (563)
+...-..-+.++|+||+ ..++-+..+.|..|+ . ++. .+.+..++....+++.+ +|++.++
T Consensus 216 ~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD~e~G~lwva 283 (355)
T 3sre_A 216 VAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVG 283 (355)
T ss_dssp EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEE
T ss_pred eecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeCCCCCceEEEeCCCCcEEEE
Confidence 33334566899999998 455556678898888 3 332 22344455677888888 5885443
No 377
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=38.70 E-value=1.2e+02 Score=24.24 Aligned_cols=78 Identities=10% Similarity=-0.043 Sum_probs=48.6
Q ss_pred CCcchHHHHHHHHHhhcCCCccHHHHHhhHHHHHHHhhhhccCCChhHHHHHHHHHHHHHhhhhhcCCchhhhHHHHHHH
Q 008510 417 TLPANLLTGIRAVTNLFKNSSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAAL 496 (563)
Q Consensus 417 ~~~~~~ll~lR~l~N~f~~~~~~~~~~~~~~~il~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~~~~~~~~l~~~~~ 496 (563)
..+..+..+++.|.++-. ...+..+...+..++..+|.+++..+-++. + .+.+..+.
T Consensus 54 ~~~~vR~~A~~aL~~~~~------------~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~-------~----~~a~~~L~ 110 (131)
T 1te4_A 54 EDWRIRGAAAWIIGNFQD------------ERAVEPLIKLLEDDSGFVRSGAARSLEQIG-------G----ERVRAAME 110 (131)
T ss_dssp SCHHHHHHHHHHHGGGCS------------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHC-------S----HHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCC------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC-------c----HHHHHHHH
Confidence 345677889999988642 112222333334567889988888877764 1 12344455
Q ss_pred HhhhhcccChhHHHHHHHHHhhh
Q 008510 497 EIAEEESIEVDSKYRALVAIGTL 519 (563)
Q Consensus 497 ~~l~~~~~~~Ea~~R~l~AlG~l 519 (563)
+.+. ..|++.......|||.+
T Consensus 111 ~~l~--d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 111 KLAE--TGTGFARKVAVNYLETH 131 (131)
T ss_dssp HHTT--SCCTHHHHHHHHHGGGC
T ss_pred HHHh--CCCHHHHHHHHHHHHhC
Confidence 6663 45778888888888753
No 378
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=37.66 E-value=82 Score=29.04 Aligned_cols=74 Identities=7% Similarity=0.090 Sum_probs=47.3
Q ss_pred HHHHHHHhhhhccCCChhHHHHHHHHHHHHHhhhhhcCCc--hhh-hHHHHHHHHhhhhcccChhHHHHHHHHHhhhhc
Q 008510 446 RSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDE--EGQ-SHVLSAALEIAEEESIEVDSKYRALVAIGTLML 521 (563)
Q Consensus 446 ~~~il~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~~~--~~~-~~l~~~~~~~l~~~~~~~Ea~~R~l~AlG~l~~ 521 (563)
.+.+++.+...+.+.+..+|.++.+++-.+.-.....+.. ... .+++..+.+.+. ..++|..-...-+||+++.
T Consensus 144 l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~--D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 144 NEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVN--DTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp THHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHT--CSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHH
Confidence 4566666777777778889988888887766442211010 112 345666666663 4577888888888888775
No 379
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=36.47 E-value=2.3e+02 Score=25.29 Aligned_cols=106 Identities=12% Similarity=0.139 Sum_probs=60.8
Q ss_pred HHHHHHHhhcCCCCCcchHHHHHHHHHhhcCCCccHHHHHhhHHHHHHHhhhhccCCChhHHHHHHHHHHHHHhhhhhc-
Q 008510 404 VLMEMIEKVSSNPTLPANLLTGIRAVTNLFKNSSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEK- 482 (563)
Q Consensus 404 ~~~~~l~~~~~~~~~~~~~ll~lR~l~N~f~~~~~~~~~~~~~~~il~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~- 482 (563)
++..++....+. .+..+--+..++.+++.+.. ...+++.+...+...+..+|..+..++-.+.......
T Consensus 99 ilp~ll~~l~d~--~~~vr~~a~~aL~~~~~~~~--------~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~ 168 (242)
T 2qk2_A 99 CVPSLLEKFKEK--KPNVVTALREAIDAIYASTS--------LEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTA 168 (242)
T ss_dssp HHHHHHHGGGCC--CHHHHHHHHHHHHHHHTTSC--------HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHHcCC--CHHHHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCC
Confidence 344444444332 23444455555555555432 3456666666666778889999999888854332111
Q ss_pred CCchhhhHHHHHHHHhhhhcccChhHHHHHHHHHhhhhc
Q 008510 483 KDEEGQSHVLSAALEIAEEESIEVDSKYRALVAIGTLML 521 (563)
Q Consensus 483 ~~~~~~~~l~~~~~~~l~~~~~~~Ea~~R~l~AlG~l~~ 521 (563)
........++..+.+.+. ..+++..-...-++|.+..
T Consensus 169 ~~~~~l~~l~p~l~~~l~--D~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 169 LNKKLLKLLTTSLVKTLN--EPDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp CCHHHHHHHHHHHHHHHT--SSCHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHHH
Confidence 111223345566666663 4566777777777777765
No 380
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=36.46 E-value=97 Score=33.66 Aligned_cols=36 Identities=11% Similarity=0.261 Sum_probs=26.8
Q ss_pred EEEEEEccCCcEEEEeCCCcEEEEEcCCCceeceeee
Q 008510 73 VWDAKFLENGDIVTACSDGVTRIWTVHSDKVADSLEL 109 (563)
Q Consensus 73 V~~v~~~p~g~i~sgs~Dg~Irvwd~~~~~~~~~~~~ 109 (563)
|.++.+ ++.-+++-|.|+++|+|+++++++.....+
T Consensus 224 Is~~~~-~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 224 ISCKLF-HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEE-TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred EEEecc-CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 555544 233389999999999999999987655555
No 381
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=36.39 E-value=4e+02 Score=28.86 Aligned_cols=99 Identities=12% Similarity=-0.017 Sum_probs=66.2
Q ss_pred cchHHHHHHHHHhhcCCCccHHHHHhhHHHHHHHhhhhccCCChhHHHHHHHHHHHHHhhhhhcC-CchhhhHHHHHHHH
Q 008510 419 PANLLTGIRAVTNLFKNSSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKK-DEEGQSHVLSAALE 497 (563)
Q Consensus 419 ~~~~ll~lR~l~N~f~~~~~~~~~~~~~~~il~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~-~~~~~~~l~~~~~~ 497 (563)
...+-.+++++.++..... ...+..+...++..+...+..++..+|.+++..+-+++......- .......++..+++
T Consensus 383 ~~~r~~a~~~l~~i~~~~~-~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~ 461 (861)
T 2bpt_A 383 WRNREAAVMAFGSIMDGPD-KVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLI 461 (861)
T ss_dssp HHHHHHHHHHHHHTSSSSC-HHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHH
Confidence 4566778888888875433 234456677888888777777899999999888888887765421 12234455666666
Q ss_pred hhhhcccChhHHHHHHHHHhhhhc
Q 008510 498 IAEEESIEVDSKYRALVAIGTLML 521 (563)
Q Consensus 498 ~l~~~~~~~Ea~~R~l~AlG~l~~ 521 (563)
.+.. +++.....+.||++++.
T Consensus 462 ~l~~---~~~v~~~a~~al~~l~~ 482 (861)
T 2bpt_A 462 GLQD---HPKVATNCSWTIINLVE 482 (861)
T ss_dssp HHTS---CHHHHHHHHHHHHHHHH
T ss_pred Hhcc---ChHHHHHHHHHHHHHHH
Confidence 6632 36666667777777654
No 382
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=36.39 E-value=3.6e+02 Score=29.33 Aligned_cols=100 Identities=12% Similarity=-0.030 Sum_probs=67.3
Q ss_pred CcchHHHHHHHHHhhcCCCccHHHHHhhHHHHHHHhhhhccCCChhHHHHHHHHHHHHHhhhhhcC-CchhhhHHHHHHH
Q 008510 418 LPANLLTGIRAVTNLFKNSSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKK-DEEGQSHVLSAAL 496 (563)
Q Consensus 418 ~~~~~ll~lR~l~N~f~~~~~~~~~~~~~~~il~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~-~~~~~~~l~~~~~ 496 (563)
.+..+..+++++.++...... ..+..+...++..+...+..++..+|.+++..+-+++-.....- .......++..++
T Consensus 379 ~~~~r~~a~~~l~~i~~~~~~-~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~ 457 (876)
T 1qgr_A 379 DWRYRDAAVMAFGCILEGPEP-SQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLI 457 (876)
T ss_dssp SHHHHHHHHHHHHHTSSSSCH-HHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHH
Confidence 355678888888888765432 23345667788888777777889999999999999987754421 1223345566666
Q ss_pred HhhhhcccChhHHHHHHHHHhhhhc
Q 008510 497 EIAEEESIEVDSKYRALVAIGTLML 521 (563)
Q Consensus 497 ~~l~~~~~~~Ea~~R~l~AlG~l~~ 521 (563)
+.+.. ++....+++.||++++.
T Consensus 458 ~~l~~---~~~v~~~a~~al~~l~~ 479 (876)
T 1qgr_A 458 EGLSA---EPRVASNVCWAFSSLAE 479 (876)
T ss_dssp HHTTS---CHHHHHHHHHHHHHHHH
T ss_pred HHHcC---CHHHHHHHHHHHHHHHH
Confidence 66632 35666677777777764
No 383
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=35.18 E-value=2.1e+02 Score=27.72 Aligned_cols=42 Identities=7% Similarity=0.122 Sum_probs=25.5
Q ss_pred CCCEEEEEECCCcEEEEcCCCceeEEE-------ecCCCcEEEEEEcCC
Q 008510 2 PGVGIISASHDCTIRLWALTGQVLMEM-------VGHTAIVYSIDSHAS 43 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~~g~~i~~l-------~gH~~~V~~v~~~p~ 43 (563)
+|++++.+..+|.|++++.+|.....+ .........++++|+
T Consensus 28 dG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pd 76 (353)
T 2g8s_A 28 DNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPD 76 (353)
T ss_dssp TTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTT
T ss_pred CCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCC
Confidence 355255566789999988755432111 112345789999995
No 384
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=33.94 E-value=61 Score=37.51 Aligned_cols=38 Identities=16% Similarity=0.309 Sum_probs=28.3
Q ss_pred cEEEEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeee
Q 008510 72 CVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLEL 109 (563)
Q Consensus 72 ~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~ 109 (563)
.+-+++..++.. +.+-|.|+++|+|++.++++.....+
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~DL 277 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL 277 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEEC
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeech
Confidence 344555556656 78999999999999999987655443
No 385
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=33.29 E-value=53 Score=38.01 Aligned_cols=34 Identities=26% Similarity=0.275 Sum_probs=27.0
Q ss_pred EEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe
Q 008510 35 VYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE 68 (563)
Q Consensus 35 V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~ 68 (563)
+.+++..++. .+++-+.|+++|||+ +++|+.+..
T Consensus 240 ~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 240 IISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp BSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 3445555665 888999999999999 888988865
No 386
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=32.37 E-value=2.4e+02 Score=24.15 Aligned_cols=79 Identities=6% Similarity=-0.036 Sum_probs=52.0
Q ss_pred CcchHHHHHHHHHhhcCCCccHHHHHhhHHHHHHHhhhhccCCChhHHHHHHHHHHHHHhhhhhcCCchhhhHHHHHHHH
Q 008510 418 LPANLLTGIRAVTNLFKNSSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAALE 497 (563)
Q Consensus 418 ~~~~~ll~lR~l~N~f~~~~~~~~~~~~~~~il~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~~~~~~~~l~~~~~~ 497 (563)
.+..+..+++.|.++-.. ..+..+...+..++..+|.+++..+-++.- .+.+..+.+
T Consensus 89 ~~~vr~~a~~aL~~~~~~------------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~ 145 (201)
T 3ltj_A 89 DGWVRQSAAVALGQIGDE------------RAVEPLIKALKDEDWFVRIAAAFALGEIGD-----------ERAVEPLIK 145 (201)
T ss_dssp SHHHHHHHHHHHHHHCCG------------GGHHHHHHHTTCSSHHHHHHHHHHHHHHTC-----------GGGHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcH------------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------HHHHHHHHH
Confidence 456678888888876321 123333344556788899999888877631 123444566
Q ss_pred hhhhcccChhHHHHHHHHHhhhhc
Q 008510 498 IAEEESIEVDSKYRALVAIGTLML 521 (563)
Q Consensus 498 ~l~~~~~~~Ea~~R~l~AlG~l~~ 521 (563)
.+. ..+++.....+.|||.+-.
T Consensus 146 ~l~--d~~~~vr~~A~~aL~~~~~ 167 (201)
T 3ltj_A 146 ALK--DEDGWVRQSAADALGEIGG 167 (201)
T ss_dssp HTT--CSSHHHHHHHHHHHHHHCS
T ss_pred HHc--CCCHHHHHHHHHHHHHhCc
Confidence 663 3577889999999998854
No 387
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=30.97 E-value=46 Score=30.59 Aligned_cols=57 Identities=7% Similarity=-0.147 Sum_probs=37.7
Q ss_pred EEEEEcCCCeEEEEeCCCcEEEEc--CCcee------EEEe-cC-CcEEEEEEccCCcEEEEeCCCcEE
Q 008510 36 YSIDSHASGLIVSGSEDRFAKIWK--DGVCV------QSIE-HP-GCVWDAKFLENGDIVTACSDGVTR 94 (563)
Q Consensus 36 ~~v~~~p~g~l~s~s~D~tvriWd--~~~~~------~~l~-h~-~~V~~v~~~p~g~i~sgs~Dg~Ir 94 (563)
.++.|.|+|.|..+ .||.|.-|+ +...- ..+. +. ..+..|.+.|+|.|.... |+.++
T Consensus 91 ~a~~fD~~G~LYav-~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-dg~ly 157 (236)
T 1tl2_A 91 QFLFFDPNGYLYAV-SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-GQQFY 157 (236)
T ss_dssp SEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-TTEEE
T ss_pred eEEEECCCCCEEEe-CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe-CCcEE
Confidence 67889999944444 568887777 21111 1222 12 268999999999987777 88754
No 388
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=28.66 E-value=2.1e+02 Score=28.20 Aligned_cols=58 Identities=21% Similarity=0.216 Sum_probs=34.6
Q ss_pred chHHHHHHHHHhhcCCCccHHHHHhhHHHHHHHhhhhccCC--ChhHHHHHHHHHHHHHhh
Q 008510 420 ANLLTGIRAVTNLFKNSSWYSWLQKNRSEILDAFSSCYSSS--NKNVQLSYSTLILNYAVL 478 (563)
Q Consensus 420 ~~~ll~lR~l~N~f~~~~~~~~~~~~~~~il~~~~~~~~~~--~k~~~~a~atl~~N~s~~ 478 (563)
..+..++++|.+++....+ ..+..+...++..+...+... +..+|.+++..+.++.-+
T Consensus 145 ~~r~~al~~l~~l~~~~~~-~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~ 204 (462)
T 1ibr_B 145 HMKESTLEAIGYICQDIDP-EQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEF 204 (462)
T ss_dssp HHHHHHHHHHHHHHHHSCG-GGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHhCCc-hhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHH
Confidence 3445566666555543211 113344566777777666655 678999888888886533
No 389
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=28.10 E-value=5.5e+02 Score=27.02 Aligned_cols=99 Identities=10% Similarity=-0.021 Sum_probs=63.2
Q ss_pred CCEEEEEECCCcEEEEcCCCceeEEEec-CCCcEEEEEEcCC-C-eEEEE-eCCCcEEEEc-CCceeEEEec--CCcEEE
Q 008510 3 GVGIISASHDCTIRLWALTGQVLMEMVG-HTAIVYSIDSHAS-G-LIVSG-SEDRFAKIWK-DGVCVQSIEH--PGCVWD 75 (563)
Q Consensus 3 g~~l~s~s~DgtIrlWd~~g~~i~~l~g-H~~~V~~v~~~p~-g-~l~s~-s~D~tvriWd-~~~~~~~l~h--~~~V~~ 75 (563)
++.+++-+..+.|.+-+++|.....+.. .-....++++.|. | .++|- +....|...+ +|.....+.. -.....
T Consensus 404 ~~lY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~l~~P~G 483 (619)
T 3s94_A 404 RNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVNTSLGWPNG 483 (619)
T ss_dssp TEEEEEETTTTEEEEEETTSCSCEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEE
T ss_pred CcEEEEeCCCCcEEEEeCCCCeEEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEEEEeCCCCCCee
Confidence 4566666667888888887766555543 3356789999996 6 44543 2234454444 6665555542 236778
Q ss_pred EEEccCC-cEEEE-eCCCcEEEEEcCCC
Q 008510 76 AKFLENG-DIVTA-CSDGVTRIWTVHSD 101 (563)
Q Consensus 76 v~~~p~g-~i~sg-s~Dg~Irvwd~~~~ 101 (563)
+++.+++ +|..+ +..+.|..++++..
T Consensus 484 lalD~~~~~LY~aD~~~~~I~~~~~dG~ 511 (619)
T 3s94_A 484 LALDYDEGKIYWGDAKTDKIEVMNTDGT 511 (619)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEESSSC
T ss_pred eEEcccCCEEEEEECCCCEEEEEecCCC
Confidence 9999854 45444 45578888888654
No 390
>3fbl_A Putative uncharacterized protein; AFV1, archaeal virus, extremophiles, lipothrixviridae, structural protein, DNA-binding protein; 1.95A {Acidianus filamentous virus 1}
Probab=27.95 E-value=41 Score=23.54 Aligned_cols=27 Identities=22% Similarity=0.363 Sum_probs=23.0
Q ss_pred HHHHHHHHhcCCCcccHHHHHHHHHHh
Q 008510 222 DAADKWLLKENLPFSYRQQIVEFILQN 248 (563)
Q Consensus 222 ~~a~~f~~~~~l~~~~~~~v~~fi~~n 248 (563)
++-..|-.+.++.+.-...|++||..|
T Consensus 55 naisafssrtgisqetaqkiadfitsn 81 (82)
T 3fbl_A 55 NAISAFSSRTGISQETAQKIADFITSN 81 (82)
T ss_dssp HHHHHHHTSTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccccHHHHHHHHHHHhcC
Confidence 445678888999999999999999987
No 391
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=26.78 E-value=4.1e+02 Score=25.09 Aligned_cols=14 Identities=0% Similarity=-0.052 Sum_probs=9.7
Q ss_pred CcEEEEEcCCCcee
Q 008510 91 GVTRIWTVHSDKVA 104 (563)
Q Consensus 91 g~Irvwd~~~~~~~ 104 (563)
..+.+||..+.+..
T Consensus 168 ~~v~~yd~~~~~W~ 181 (357)
T 2uvk_A 168 KFLLSFDPSTQQWS 181 (357)
T ss_dssp CEEEEEETTTTEEE
T ss_pred ccEEEEeCCCCcEE
Confidence 46778888776644
No 392
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=26.66 E-value=4.4e+02 Score=25.44 Aligned_cols=93 Identities=11% Similarity=-0.115 Sum_probs=50.4
Q ss_pred CEEEEEECCCcEEEEcC-C-CceeEEE--ecCCCcEEEEEEcC--CCeEEEEeCCC----cEEEEc-CCceeEEEec---
Q 008510 4 VGIISASHDCTIRLWAL-T-GQVLMEM--VGHTAIVYSIDSHA--SGLIVSGSEDR----FAKIWK-DGVCVQSIEH--- 69 (563)
Q Consensus 4 ~~l~s~s~DgtIrlWd~-~-g~~i~~l--~gH~~~V~~v~~~p--~g~l~s~s~D~----tvriWd-~~~~~~~l~h--- 69 (563)
..|..|...| +.+++. . |+....+ ......|.+|++.| .+.+..++..+ .|...+ .++.-+.+..
T Consensus 23 g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~D~G~tW~~~~~~~~ 101 (394)
T 3b7f_A 23 VMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSDDGGGNWTEATRPPA 101 (394)
T ss_dssp CEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEESSTTSCCEECSBCCC
T ss_pred CEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEeCCCCCCceECCcccc
Confidence 3577777777 444443 2 3333222 12235699999998 45455555454 444443 3433333321
Q ss_pred -C-----------CcEEEEEEcc---CCcEEEEeCCCcEEEEE
Q 008510 70 -P-----------GCVWDAKFLE---NGDIVTACSDGVTRIWT 97 (563)
Q Consensus 70 -~-----------~~V~~v~~~p---~g~i~sgs~Dg~Irvwd 97 (563)
+ ..|+++++.| .+.+..++.++.|...+
T Consensus 102 ~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~ 144 (394)
T 3b7f_A 102 FNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRST 144 (394)
T ss_dssp CCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEES
T ss_pred CCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEc
Confidence 1 2588899987 34477776666655543
No 393
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=26.65 E-value=4.8e+02 Score=27.95 Aligned_cols=94 Identities=11% Similarity=0.120 Sum_probs=54.0
Q ss_pred EEEEECCCcEEEEcCCCceeEEEecC------CCcEEEEEEcCCC-eEEEEeCCCcEEEEc-CCceeEEEe--cCCcEEE
Q 008510 6 IISASHDCTIRLWALTGQVLMEMVGH------TAIVYSIDSHASG-LIVSGSEDRFAKIWK-DGVCVQSIE--HPGCVWD 75 (563)
Q Consensus 6 l~s~s~DgtIrlWd~~g~~i~~l~gH------~~~V~~v~~~p~g-~l~s~s~D~tvriWd-~~~~~~~l~--h~~~V~~ 75 (563)
+..|..+| +..++........+... ...|.++...+++ .+..|.. +-+..++ ....+..+. ....|.+
T Consensus 159 lWigt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~ 236 (758)
T 3ott_A 159 IYVGTYNG-LCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKS 236 (758)
T ss_dssp EEEEETTE-EEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEE
T ss_pred EEEEeCCC-HhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEE
Confidence 33344444 66677633222222211 2348888887765 4444553 3477777 433333333 2336889
Q ss_pred EEEccCCcEEEEeCCCcEEEEEcCCCc
Q 008510 76 AKFLENGDIVTACSDGVTRIWTVHSDK 102 (563)
Q Consensus 76 v~~~p~g~i~sgs~Dg~Irvwd~~~~~ 102 (563)
+...++|.+..|+.+ -+.+++..+++
T Consensus 237 i~~d~~g~lWigT~~-Gl~~~~~~~~~ 262 (758)
T 3ott_A 237 LALDGNGDLLAGTDN-GLYVYHNDTTP 262 (758)
T ss_dssp EEECTTCCEEEEETT-EEEEECCTTSC
T ss_pred EEEcCCCCEEEEeCC-ceeEEecCCCc
Confidence 988888888777754 57788876654
No 394
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=26.30 E-value=3e+02 Score=31.78 Aligned_cols=109 Identities=8% Similarity=0.021 Sum_probs=67.1
Q ss_pred HHHHHHhhcCCCCCcchHHHHHHHHHhhcCCCccHHHHHhhHHHHHHHhhhhccCCChhHHHHHHHHHHHHHhhhhhcC-
Q 008510 405 LMEMIEKVSSNPTLPANLLTGIRAVTNLFKNSSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKK- 483 (563)
Q Consensus 405 ~~~~l~~~~~~~~~~~~~ll~lR~l~N~f~~~~~~~~~~~~~~~il~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~- 483 (563)
+..++..+. +..+..+..++++++++...-.. .++..|+..+...+..++..+|.+++..+-.++..+....
T Consensus 50 l~~Ll~~L~--d~~~~vR~~A~~~L~~l~~~~~~-----~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~ 122 (1230)
T 1u6g_C 50 VKMILKLLE--DKNGEVQNLAVKCLGPLVSKVKE-----YQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASS 122 (1230)
T ss_dssp HHHHHHHTT--CSSHHHHHHHHHHHHHHHTTSCH-----HHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHhc--CCCHHHHHHHHHHHHHHHHhCCH-----HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCccc
Confidence 444444443 23456678899999988865432 3456677777666666778889888877776665433220
Q ss_pred ----CchhhhHHHHHHHHhhhhcccChhHHHHHHHHHhhhhc
Q 008510 484 ----DEEGQSHVLSAALEIAEEESIEVDSKYRALVAIGTLML 521 (563)
Q Consensus 484 ----~~~~~~~l~~~~~~~l~~~~~~~Ea~~R~l~AlG~l~~ 521 (563)
......+++..+.+.+.. ..+.+.....+.+|+.++.
T Consensus 123 ~~~~~~~~~~~llp~L~~~l~~-~~~~~~~~~al~~l~~~~~ 163 (1230)
T 1u6g_C 123 GSALAANVCKKITGRLTSAIAK-QEDVSVQLEALDIMADMLS 163 (1230)
T ss_dssp -CCTHHHHHHHHHHHHHHHHSC-CSCHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHcC-CCchHHHHHHHHHHHHHHH
Confidence 011234566666666642 3456777788888888763
No 395
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=25.88 E-value=6.3e+02 Score=26.98 Aligned_cols=89 Identities=16% Similarity=0.219 Sum_probs=52.8
Q ss_pred CEEEEEECCCcEEEEcC-CCceeEEEe-cCCCcEEEEEEcCCCeEEEEeCCCcEEEEc-CCceeEEEec---------CC
Q 008510 4 VGIISASHDCTIRLWAL-TGQVLMEMV-GHTAIVYSIDSHASGLIVSGSEDRFAKIWK-DGVCVQSIEH---------PG 71 (563)
Q Consensus 4 ~~l~s~s~DgtIrlWd~-~g~~i~~l~-gH~~~V~~v~~~p~g~l~s~s~D~tvriWd-~~~~~~~l~h---------~~ 71 (563)
+.+..|..+ -+..++. +++. ..+. -....|+++....+|.+..|..+ -+.+++ ....++.+.+ ..
T Consensus 203 ~~lWigt~~-Gl~~~~~~~~~~-~~~~~l~~~~i~~i~~d~~g~lWigT~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~ 279 (758)
T 3ott_A 203 QCVWIGTEG-YLFQYFPSTGQI-KQTEAFHNNSIKSLALDGNGDLLAGTDN-GLYVYHNDTTPLQHIIHDSRNIQSLTNN 279 (758)
T ss_dssp TEEEEEEEE-EEEEEETTTTEE-EEEEEEEEEEEEEEEECTTCCEEEEETT-EEEEECCTTSCCEEECCCTTCTTSCSCS
T ss_pred CEEEEEECC-CCeEEcCCCCeE-EeccCCCCCeEEEEEEcCCCCEEEEeCC-ceeEEecCCCcEEEEEcCCCCcCcCCcC
Confidence 334444433 3667777 4433 2221 12345888888888855555654 477788 4433444432 13
Q ss_pred cEEEEEEccCCcEEEEeCCCcEEEE
Q 008510 72 CVWDAKFLENGDIVTACSDGVTRIW 96 (563)
Q Consensus 72 ~V~~v~~~p~g~i~sgs~Dg~Irvw 96 (563)
.|+++....+|.|-.|+..| +.++
T Consensus 280 ~i~~i~~D~~g~lWiGT~~G-l~~~ 303 (758)
T 3ott_A 280 IIWNIFADQEHNIWLGTDYG-ISLS 303 (758)
T ss_dssp CEEEEEECTTCCEEEEESSS-EEEE
T ss_pred eEEEEEEcCCCCEEEEeCCc-cccc
Confidence 59999888888888888777 4444
No 396
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=25.75 E-value=1.7e+02 Score=27.92 Aligned_cols=16 Identities=38% Similarity=0.503 Sum_probs=9.8
Q ss_pred EEEEecccceEEEeCc
Q 008510 161 AYSWDMKEQKWDKLGE 176 (563)
Q Consensus 161 ~~~wd~~~~~w~~~g~ 176 (563)
+..+|..+..|..++.
T Consensus 287 ~~~yd~~~~~W~~~~~ 302 (357)
T 2uvk_A 287 TDIHLWHNGKWDKSGE 302 (357)
T ss_dssp CEEEECC---CEEEEE
T ss_pred EEEEecCCCceeeCCC
Confidence 5678888999998753
No 397
>1wjt_A Transcription elongation factor S-II protein 3; four-helix bundle, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.48.3.1
Probab=25.06 E-value=1.7e+02 Score=22.98 Aligned_cols=52 Identities=4% Similarity=0.097 Sum_probs=36.3
Q ss_pred cChhHHHHHHHHHhhhhchhHHHHHhhhcChHHHHHHHhhc-CChhHHHHHHHHHH
Q 008510 504 IEVDSKYRALVAIGTLMLEGLVKKIALDFDVGNIARVAKAS-KETKIAEVGADIEL 558 (563)
Q Consensus 504 ~~~Ea~~R~l~AlG~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~ei~~ 558 (563)
.++|.+..+|-.|..+-.. .++.+.-++.-.|.+++.. ..+.|...|++|..
T Consensus 28 ~~~~~~l~~L~~L~~~~iT---~e~L~~T~IGk~Vn~LrKh~~~~~V~~lAk~Lv~ 80 (103)
T 1wjt_A 28 KKTEGALDLLKKLNSCQMS---IQLLQTTRIGVAVNGVRKHCSDKEVVSLAKVLIK 80 (103)
T ss_dssp TCCSSHHHHHHHHHTSCCC---HHHHHHTCHHHHHHHHHHHCCCSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCCC---HHHHHHcchhHHHHHHHccCCcHHHHHHHHHHHH
Confidence 4557788888888776432 3344445566778888874 77789999988864
No 398
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=25.05 E-value=5.3e+02 Score=25.84 Aligned_cols=90 Identities=9% Similarity=0.007 Sum_probs=0.0
Q ss_pred CCCEEEEEECCCcEEEEcC-CCceeEEEec--------CCCcEEEEEEcC----CC-eEEEEeC------------CCcE
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVLMEMVG--------HTAIVYSIDSHA----SG-LIVSGSE------------DRFA 55 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~g--------H~~~V~~v~~~p----~g-~l~s~s~------------D~tv 55 (563)
+|+.+++-...+.|++++. +|+......- .......|+|+| ++ ..++-+. ...|
T Consensus 37 dG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~~~~~~~~~v 116 (454)
T 1cru_A 37 DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTDKELPNQTII 116 (454)
T ss_dssp TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--CCSCEEEEE
T ss_pred CCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCccccccccEE
Q ss_pred EEEc-CCc---------eeEEEe--cCCcEEEEEEccCCcEEEEeCCC
Q 008510 56 KIWK-DGV---------CVQSIE--HPGCVWDAKFLENGDIVTACSDG 91 (563)
Q Consensus 56 riWd-~~~---------~~~~l~--h~~~V~~v~~~p~g~i~sgs~Dg 91 (563)
.-|+ +.. .+..+. ..+....++|.|+|.|..+..|+
T Consensus 117 ~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd~ 164 (454)
T 1cru_A 117 RRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGDQ 164 (454)
T ss_dssp EEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECCT
T ss_pred EEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECCC
No 399
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=24.03 E-value=2.2e+02 Score=30.13 Aligned_cols=92 Identities=11% Similarity=0.021 Sum_probs=53.2
Q ss_pred CCcchHHHHHHHHHhhcCCCccHHHHHhhHHHHHHHhhhhc--cCCChhHHHHHHHHHHHHHhhhhhcCCchhhhHHHHH
Q 008510 417 TLPANLLTGIRAVTNLFKNSSWYSWLQKNRSEILDAFSSCY--SSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSA 494 (563)
Q Consensus 417 ~~~~~~ll~lR~l~N~f~~~~~~~~~~~~~~~il~~~~~~~--~~~~k~~~~a~atl~~N~s~~~~~~~~~~~~~~l~~~ 494 (563)
.++..+-++||++||+-. .. ..+.++..+..++ ...++.+|-.++-.++++.-..-..-.. ..++..
T Consensus 123 ~n~~ir~lALr~L~~i~~----~e----~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~---~~~~~~ 191 (621)
T 2vgl_A 123 RNPTFMGLALHCIANVGS----RE----MAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPM---GDWTSR 191 (621)
T ss_dssp CCHHHHHHHHHHHHHHCC----HH----HHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCC---CSCHHH
T ss_pred CCHHHHHHHHHHhhccCC----HH----HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCc---hhHHHH
Confidence 356667899999999843 11 2234555555566 5678899988888888876532111110 123334
Q ss_pred HHHhhhhcccChhHHHHHHHHHhhhhc
Q 008510 495 ALEIAEEESIEVDSKYRALVAIGTLML 521 (563)
Q Consensus 495 ~~~~l~~~~~~~Ea~~R~l~AlG~l~~ 521 (563)
+.+++. +.|+-+++-.+.+|..+..
T Consensus 192 l~~lL~--d~d~~V~~~a~~~l~~i~~ 216 (621)
T 2vgl_A 192 VVHLLN--DQHLGVVTAATSLITTLAQ 216 (621)
T ss_dssp HHHHTT--CSCHHHHHHHHHHHHHHHH
T ss_pred HHHHhC--CCCccHHHHHHHHHHHHHH
Confidence 445552 3455555555555555443
No 400
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=23.96 E-value=66 Score=34.95 Aligned_cols=29 Identities=14% Similarity=0.403 Sum_probs=23.6
Q ss_pred CCCEEEEEECCCcEEEEcC-CCceeEEEec
Q 008510 2 PGVGIISASHDCTIRLWAL-TGQVLMEMVG 30 (563)
Q Consensus 2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~g 30 (563)
++.++++-+.|.++|+|++ +++++.+..-
T Consensus 230 ~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 230 HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 4568888999999999999 8888877654
No 401
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=23.34 E-value=1.9e+02 Score=31.60 Aligned_cols=97 Identities=16% Similarity=0.058 Sum_probs=54.7
Q ss_pred HHHHHHHHHhhcCCCccHHHHHhhHHHHHHHhhhhccCC-ChhHHHHHHHHHHHHHhhhhhcCCchhhhHHHHHHHHhhh
Q 008510 422 LLTGIRAVTNLFKNSSWYSWLQKNRSEILDAFSSCYSSS-NKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAALEIAE 500 (563)
Q Consensus 422 ~ll~lR~l~N~f~~~~~~~~~~~~~~~il~~~~~~~~~~-~k~~~~a~atl~~N~s~~~~~~~~~~~~~~l~~~~~~~l~ 500 (563)
+.-+++++.+++... + ..+..+...++..+...+... +..+|.++..++-+++...... -.....+++..+.+.+.
T Consensus 625 ~~~a~~~l~~l~~~~-~-~~~~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~-~~~~~~~i~~~l~~~l~ 701 (876)
T 1qgr_A 625 QEDALMAVSTLVEVL-G-GEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSN-IIPFCDEVMQLLLENLG 701 (876)
T ss_dssp HHHHHHHHHHHHHHH-G-GGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGG-GHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHH-H-hhHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHhC
Confidence 444555555555421 1 112233455666665555444 7889988888887777654321 11123455666666664
Q ss_pred hcccChhHHHHHHHHHhhhhc
Q 008510 501 EESIEVDSKYRALVAIGTLML 521 (563)
Q Consensus 501 ~~~~~~Ea~~R~l~AlG~l~~ 521 (563)
..+.+.+...-.+.++|.++.
T Consensus 702 ~~~~~~~~~~~~~~~l~~i~~ 722 (876)
T 1qgr_A 702 NENVHRSVKPQILSVFGDIAL 722 (876)
T ss_dssp CTTSCGGGHHHHHHHHHHHHH
T ss_pred CccccHHhhHHHHHHHHHHHH
Confidence 333455677777888888765
No 402
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=23.09 E-value=4.8e+02 Score=25.22 Aligned_cols=77 Identities=13% Similarity=0.110 Sum_probs=47.4
Q ss_pred eeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc-C-Ccee--EEEe-----cCCcEEEEEEccC----CcEEEE--
Q 008510 24 VLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-D-GVCV--QSIE-----HPGCVWDAKFLEN----GDIVTA-- 87 (563)
Q Consensus 24 ~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd-~-~~~~--~~l~-----h~~~V~~v~~~p~----g~i~sg-- 87 (563)
.+..+...-..-+.++|.|+| .+++--..|.|++++ . +... ..+. ..+....|+++|+ +.|...
T Consensus 23 ~~~~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt 102 (347)
T 3das_A 23 VLRTVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFT 102 (347)
T ss_dssp EEEEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEE
T ss_pred eeEEeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEe
Confidence 344455445667899999999 666554489999998 3 4432 1121 2346889999995 554322
Q ss_pred -eCCCcEEEEEcCC
Q 008510 88 -CSDGVTRIWTVHS 100 (563)
Q Consensus 88 -s~Dg~Irvwd~~~ 100 (563)
..++.|.-|+...
T Consensus 103 ~~~~~~v~R~~~~~ 116 (347)
T 3das_A 103 SASDNRIVRMLYDE 116 (347)
T ss_dssp CSSSEEEEEEEBCT
T ss_pred cCCCCEEEEEEeCC
Confidence 2445555566554
No 403
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=22.99 E-value=2.7e+02 Score=27.40 Aligned_cols=73 Identities=7% Similarity=-0.054 Sum_probs=48.0
Q ss_pred HHHHHHhhhhccCCChhHHHHHHHHHHHHHhhhhhcCCchhhhHHHHHHHHhhhhcccChhHHHHHHHHHhhhhc
Q 008510 447 SEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAALEIAEEESIEVDSKYRALVAIGTLML 521 (563)
Q Consensus 447 ~~il~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~Ea~~R~l~AlG~l~~ 521 (563)
..++..+...+.+.+-.+|.|+...+-+++-............+++..++..+. ..+++..++.+.|||.+..
T Consensus 365 ~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~--d~~~~Vr~~a~~~l~~~~~ 437 (462)
T 1ibr_B 365 PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMK--DPSVVVRDTAAWTVGRICE 437 (462)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGG--CSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHH
Confidence 345556666666778889988888887776422111111223456677777774 3568899999999998875
No 404
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=22.86 E-value=1e+03 Score=28.35 Aligned_cols=62 Identities=19% Similarity=0.328 Sum_probs=35.7
Q ss_pred CCcEEEEcCC--CceeEEEecC----CCcEEEEEEcCCC--eEEEEe------CCCcEEEEc-CCceeEEEe-cCCcE
Q 008510 12 DCTIRLWALT--GQVLMEMVGH----TAIVYSIDSHASG--LIVSGS------EDRFAKIWK-DGVCVQSIE-HPGCV 73 (563)
Q Consensus 12 DgtIrlWd~~--g~~i~~l~gH----~~~V~~v~~~p~g--~l~s~s------~D~tvriWd-~~~~~~~l~-h~~~V 73 (563)
+..|..|++. ..+++.+..| ...|..-..+++. .+++|- -.|.+.+++ ..+.-|.+. |-+..
T Consensus 124 ~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ~iegha~~F 201 (1630)
T 1xi4_A 124 DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASF 201 (1630)
T ss_pred CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccchhhhHhHhhh
Confidence 4568889884 3566666666 3446666667766 333332 346677777 555555554 54433
No 405
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=22.74 E-value=7.6e+02 Score=26.79 Aligned_cols=98 Identities=11% Similarity=0.030 Sum_probs=58.2
Q ss_pred hHHHHHHHHHhhcCCCccHHHHHhhHHHHHHHhhhhccCCChhHHHHHHHHHHHHHhhhhhcCCchhhhHHHHHHHHhhh
Q 008510 421 NLLTGIRAVTNLFKNSSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAALEIAE 500 (563)
Q Consensus 421 ~~ll~lR~l~N~f~~~~~~~~~~~~~~~il~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~~~~~~~~l~~~~~~~l~ 500 (563)
.+.-+.+++.++...-. ..+..+...++..+...+......+|..++..+-.++...... -..-...++..++..+.
T Consensus 645 vr~~a~~~l~~l~~~~~--~~~~~~l~~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~~~~-~~p~~~~il~~L~~~l~ 721 (852)
T 4fdd_A 645 VRQSSFALLGDLTKACF--QHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIE-MQPYIPMVLHQLVEIIN 721 (852)
T ss_dssp HHHHHHHHHHHHHHHCG--GGTGGGHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHGGG-GGGGTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhHh-HHHHHHHHHHHHHHHhC
Confidence 34444555544432211 1123445667777766666666778888888888887665331 22233456777777775
Q ss_pred hcccChhHHHHHHHHHhhhhc
Q 008510 501 EESIEVDSKYRALVAIGTLML 521 (563)
Q Consensus 501 ~~~~~~Ea~~R~l~AlG~l~~ 521 (563)
.........--+..++|.|..
T Consensus 722 ~~~~~~~~~~~a~~~igrl~~ 742 (852)
T 4fdd_A 722 RPNTPKTLLENTAITIGRLGY 742 (852)
T ss_dssp CSSCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCchHHHHHHHHHHHHHH
Confidence 433344566668889999987
No 406
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=22.68 E-value=6.3e+02 Score=25.84 Aligned_cols=66 Identities=6% Similarity=0.013 Sum_probs=43.2
Q ss_pred EEEEEEcCC-C-eEEEEeC-CCcEEEEc-CCceeEEEecC-----CcEEEEEE-------ccCCc-EEEEeCCC------
Q 008510 35 VYSIDSHAS-G-LIVSGSE-DRFAKIWK-DGVCVQSIEHP-----GCVWDAKF-------LENGD-IVTACSDG------ 91 (563)
Q Consensus 35 V~~v~~~p~-g-~l~s~s~-D~tvriWd-~~~~~~~l~h~-----~~V~~v~~-------~p~g~-i~sgs~Dg------ 91 (563)
...|+|+|. + .|..+.. .+.|++.| ..+.+.++... ...+.++| .++|+ +......+
T Consensus 141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~ 220 (496)
T 3kya_A 141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDES 220 (496)
T ss_dssp EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGE
T ss_pred CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccC
Confidence 468999984 4 4444443 46688888 66666665422 25899999 99998 66665543
Q ss_pred -cEEEEEcCC
Q 008510 92 -VTRIWTVHS 100 (563)
Q Consensus 92 -~Irvwd~~~ 100 (563)
.|.+++...
T Consensus 221 ~~V~~i~r~~ 230 (496)
T 3kya_A 221 PSVYIIKRNA 230 (496)
T ss_dssp EEEEEEECCT
T ss_pred ceEEEEecCC
Confidence 266776544
No 407
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=22.64 E-value=2.2e+02 Score=27.57 Aligned_cols=49 Identities=6% Similarity=0.098 Sum_probs=34.6
Q ss_pred CcEEEEEEcCCCe-EEEEeCCCcEEEEc-CCceeEEEe--------cCCcEEEEEEccC
Q 008510 33 AIVYSIDSHASGL-IVSGSEDRFAKIWK-DGVCVQSIE--------HPGCVWDAKFLEN 81 (563)
Q Consensus 33 ~~V~~v~~~p~g~-l~s~s~D~tvriWd-~~~~~~~l~--------h~~~V~~v~~~p~ 81 (563)
..-..++|.|+|. +..+..++.|++++ ++.....+. .......++++|+
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pd 76 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPD 76 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTT
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCC
Confidence 4468999999995 77778889999998 544221111 1236789999994
No 408
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=22.50 E-value=4e+02 Score=25.09 Aligned_cols=93 Identities=11% Similarity=0.035 Sum_probs=0.0
Q ss_pred CCCEEEEEECCC--------------cEEEEcCCCceeEEEecCCCcEEEEEEcCCC-eEEEEe--CCCcEEEEc---CC
Q 008510 2 PGVGIISASHDC--------------TIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVSGS--EDRFAKIWK---DG 61 (563)
Q Consensus 2 ~g~~l~s~s~Dg--------------tIrlWd~~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s--~D~tvriWd---~~ 61 (563)
+|++|.-++... .|+..+++|.....+....+. .+++++ .++=+. .++.-.||. ++
T Consensus 63 ~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~~~~~----~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dG 138 (302)
T 3s25_A 63 DKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDPDPCI----YASLIGNYIYYLHYDTQTATSLYRIRIDG 138 (302)
T ss_dssp CSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEECSCEE----EEEEETTEEEEEEESSSSCEEEEEEETTS
T ss_pred cCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeecCCcc----EEEEeCCEEEEEeecCCCCceEEEEECCC
Q ss_pred ceeEEEe-cCCcEEEEEEccCCc-EEEEeC-CCcEEEEEcCCCc
Q 008510 62 VCVQSIE-HPGCVWDAKFLENGD-IVTACS-DGVTRIWTVHSDK 102 (563)
Q Consensus 62 ~~~~~l~-h~~~V~~v~~~p~g~-i~sgs~-Dg~Irvwd~~~~~ 102 (563)
...+.+. +.. .+++|+|+ |.-.+. ...|.+-++..+.
T Consensus 139 s~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~ 178 (302)
T 3s25_A 139 EEKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQS 178 (302)
T ss_dssp CCCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTE
T ss_pred CCeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCC
No 409
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=22.49 E-value=4.8e+02 Score=24.37 Aligned_cols=91 Identities=12% Similarity=0.022 Sum_probs=58.3
Q ss_pred CCCcEEEEcCCC-ceeEEEecCCCcEEEEEEcCCC--eEEEEeCCCcEEEEc-CC----ceeEEEe-c-CCcEEEEEEcc
Q 008510 11 HDCTIRLWALTG-QVLMEMVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK-DG----VCVQSIE-H-PGCVWDAKFLE 80 (563)
Q Consensus 11 ~DgtIrlWd~~g-~~i~~l~gH~~~V~~v~~~p~g--~l~s~s~D~tvriWd-~~----~~~~~l~-h-~~~V~~v~~~p 80 (563)
+...|+..|+.+ +....+ ........++|++.+ .+++-...+.|..++ .+ .....+- . -.....+++.+
T Consensus 8 ~~~~I~~i~~~~~~~~~~~-~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~ 86 (316)
T 1ijq_A 8 NRHEVRKMTLDRSEYTSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW 86 (316)
T ss_dssp CBSSEEEEETTSCCCEEEE-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEET
T ss_pred CCCeEEEEECCCcceEehh-cCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEee
Confidence 345699999944 444433 345667899999864 566666778899888 54 3333332 2 23567889987
Q ss_pred C-CcE-EEEeCCCcEEEEEcCCCc
Q 008510 81 N-GDI-VTACSDGVTRIWTVHSDK 102 (563)
Q Consensus 81 ~-g~i-~sgs~Dg~Irvwd~~~~~ 102 (563)
. +.| ++-...+.|.+++.....
T Consensus 87 ~~~~ly~~d~~~~~I~~~~~~g~~ 110 (316)
T 1ijq_A 87 IHSNIYWTDSVLGTVSVADTKGVK 110 (316)
T ss_dssp TTTEEEEEETTTTEEEEEETTSSS
T ss_pred cCCeEEEEECCCCEEEEEeCCCCc
Confidence 4 455 555667899999987543
No 410
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=21.65 E-value=1.9e+02 Score=30.50 Aligned_cols=67 Identities=18% Similarity=0.211 Sum_probs=48.2
Q ss_pred EEEEEEcCCC--eEEEEeCCCcEEEEc-C-------Cce-------eEEEecCCcEEEEEEccCCcE-EEEeCCCcEEEE
Q 008510 35 VYSIDSHASG--LIVSGSEDRFAKIWK-D-------GVC-------VQSIEHPGCVWDAKFLENGDI-VTACSDGVTRIW 96 (563)
Q Consensus 35 V~~v~~~p~g--~l~s~s~D~tvriWd-~-------~~~-------~~~l~h~~~V~~v~~~p~g~i-~sgs~Dg~Irvw 96 (563)
...+.++||| .+++|..+.+|.+.| + ++. .......-.-+..+|.++|.. .|---|+.|..|
T Consensus 325 PHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidSqvvkW 404 (638)
T 3sbq_A 325 PHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDSQVVKW 404 (638)
T ss_dssp CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEE
T ss_pred CcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeecceEEEE
Confidence 3578899999 577778889999999 2 221 112223337889999999984 445589999999
Q ss_pred EcCCC
Q 008510 97 TVHSD 101 (563)
Q Consensus 97 d~~~~ 101 (563)
++...
T Consensus 405 ni~~a 409 (638)
T 3sbq_A 405 NMEEA 409 (638)
T ss_dssp EHHHH
T ss_pred eccHH
Confidence 98653
No 411
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=21.52 E-value=2.7e+02 Score=29.08 Aligned_cols=92 Identities=17% Similarity=0.221 Sum_probs=56.4
Q ss_pred cchHHHHHHHHHhhcCCCccHHHHHhhHHHHHHHhhhhccCCChhHHHHHHHHHHHHHhhhhhcCCchhhh----HHHHH
Q 008510 419 PANLLTGIRAVTNLFKNSSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDEEGQS----HVLSA 494 (563)
Q Consensus 419 ~~~~ll~lR~l~N~f~~~~~~~~~~~~~~~il~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~~~~~~~----~l~~~ 494 (563)
+-.+...+|++.++-.... .....+++.+...+.+.+..++.+++.++.++.-.... ..+... .+...
T Consensus 216 ~~~q~~il~~l~~l~~~~~------~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~--~~~~~~~~~~~~~~~ 287 (591)
T 2vgl_B 216 EWGQIFILDCLSNYNPKDD------REAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPK--DSDYYNMLLKKLAPP 287 (591)
T ss_dssp HHHHHHHHHHHHTSCCCSH------HHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCB--TTBSHHHHHHHTHHH
T ss_pred chHHHHHHHHHHHhCCCCh------HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCC--CHHHHHHHHHHHHHH
Confidence 3345667788877664432 22456777887788778889999999999887532101 111111 11222
Q ss_pred HHHhhhhcccChhHHHHHHHHHhhhhc
Q 008510 495 ALEIAEEESIEVDSKYRALVAIGTLML 521 (563)
Q Consensus 495 ~~~~l~~~~~~~Ea~~R~l~AlG~l~~ 521 (563)
++.++ ..|++..|-.|-+|+.+..
T Consensus 288 L~~L~---~~d~~vr~~aL~~l~~i~~ 311 (591)
T 2vgl_B 288 LVTLL---SGEPEVQYVALRNINLIVQ 311 (591)
T ss_dssp HHHHT---TSCHHHHHHHHHHHHHHHH
T ss_pred HHHHh---cCCccHHHHHHHHHHHHHH
Confidence 23322 2577888888888888875
No 412
>2agh_C Zinc finger protein HRX; transcription; NMR {Homo sapiens}
Probab=21.05 E-value=92 Score=17.92 Aligned_cols=15 Identities=33% Similarity=0.654 Sum_probs=12.1
Q ss_pred HHHHHHHHHhcCCCC
Q 008510 239 QQIVEFILQNTGQKD 253 (563)
Q Consensus 239 ~~v~~fi~~n~~~~~ 253 (563)
..|.+|..+|++...
T Consensus 9 sdimdfvlkntpsmq 23 (31)
T 2agh_C 9 SDIMDFVLKNTPSMQ 23 (31)
T ss_dssp HHHHHHHHHHSCCCC
T ss_pred HHHHHHHHhCChhHH
Confidence 368899999998654
No 413
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=20.46 E-value=6.9e+02 Score=25.46 Aligned_cols=89 Identities=20% Similarity=0.323 Sum_probs=52.7
Q ss_pred CCcEEEEcCC--CceeEEEecCC----CcEEEEEEcCCC--eEEEE--eC----CCcEEEEc-CCceeEEEe-cCCcEEE
Q 008510 12 DCTIRLWALT--GQVLMEMVGHT----AIVYSIDSHASG--LIVSG--SE----DRFAKIWK-DGVCVQSIE-HPGCVWD 75 (563)
Q Consensus 12 DgtIrlWd~~--g~~i~~l~gH~----~~V~~v~~~p~g--~l~s~--s~----D~tvriWd-~~~~~~~l~-h~~~V~~ 75 (563)
+..|..|++. ..+++.+..|. ..|..-..+++. .+++| .. .|.+.+|+ ..+.-|.+. |-+..-.
T Consensus 124 ~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~~ 203 (494)
T 1bpo_A 124 DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQ 203 (494)
T ss_dssp SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEEEECCSEEEEEE
T ss_pred CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccchheeeeeeeEE
Confidence 5578999994 46888888775 346666777776 33333 22 35667788 666667776 6555544
Q ss_pred EEEccCCc---E-EEEeC---CCcEEEEEcCC
Q 008510 76 AKFLENGD---I-VTACS---DGVTRIWTVHS 100 (563)
Q Consensus 76 v~~~p~g~---i-~sgs~---Dg~Irvwd~~~ 100 (563)
+.+..+.. + +.+.. .+.+.|-++..
T Consensus 204 ~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~ 235 (494)
T 1bpo_A 204 FKMEGNAEESTLFCFAVRGQAGGKLHIIEVGT 235 (494)
T ss_dssp EECTTCSSEEEEEEEEECSTTCCEEEEEECSC
T ss_pred EecCCCCCCceEEEEEEecCCCcEEEEEEcCC
Confidence 44432221 2 22222 26777777754
Done!