Query 008511
Match_columns 563
No_of_seqs 196 out of 379
Neff 6.9
Searched_HMMs 46136
Date Thu Mar 28 13:05:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008511.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008511hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2073 SAP family cell cycle 100.0 6E-104 1E-108 882.3 35.4 554 1-559 1-587 (838)
2 PF04499 SAPS: SIT4 phosphatas 100.0 8.2E-77 1.8E-81 642.5 28.6 345 129-488 1-475 (475)
3 KOG2073 SAP family cell cycle 98.9 1.9E-08 4.2E-13 114.8 14.4 344 43-451 180-558 (838)
4 PF04499 SAPS: SIT4 phosphatas 92.6 0.93 2E-05 50.3 11.1 131 86-224 5-150 (475)
5 PF10508 Proteasom_PSMB: Prote 92.5 5.6 0.00012 44.5 17.4 216 107-378 43-265 (503)
6 PF05804 KAP: Kinesin-associat 83.6 80 0.0017 37.0 19.0 78 333-414 551-628 (708)
7 KOG0946 ER-Golgi vesicle-tethe 79.3 44 0.00095 39.1 14.4 56 92-150 112-167 (970)
8 PF00514 Arm: Armadillo/beta-c 62.0 27 0.00058 24.5 5.4 35 186-221 6-40 (41)
9 KOG3036 Protein involved in ce 60.2 37 0.00081 34.5 7.7 62 326-390 134-196 (293)
10 PF06025 DUF913: Domain of Unk 54.9 3.1E+02 0.0066 29.7 15.9 127 97-226 101-236 (379)
11 PF04826 Arm_2: Armadillo-like 52.8 2.7E+02 0.0058 28.4 14.5 146 186-378 48-193 (254)
12 KOG2023 Nuclear transport rece 44.8 2.4E+02 0.0051 32.8 11.6 142 302-481 129-290 (885)
13 PF05924 SAMP: SAMP Motif; In 41.9 13 0.00028 22.7 0.7 12 30-41 1-12 (20)
14 KOG1566 Conserved protein Mo25 41.0 61 0.0013 34.0 5.9 192 13-223 127-336 (342)
15 PF04802 SMK-1: Component of I 40.2 1.4E+02 0.0031 29.1 8.2 134 83-224 34-178 (193)
16 PF10508 Proteasom_PSMB: Prote 37.3 6.3E+02 0.014 28.2 26.2 285 97-449 114-420 (503)
17 PF09759 Atx10homo_assoc: Spin 36.3 1.6E+02 0.0035 25.7 7.1 67 334-401 3-71 (102)
18 PF00790 VHS: VHS domain; Int 32.6 3E+02 0.0066 25.0 8.7 57 192-249 42-98 (140)
19 PF13929 mRNA_stabil: mRNA sta 32.5 2.9E+02 0.0063 28.8 9.3 55 121-176 115-179 (292)
20 PF08569 Mo25: Mo25-like; Int 31.4 6E+02 0.013 27.0 11.8 167 52-244 42-213 (335)
21 PF04388 Hamartin: Hamartin pr 29.8 4.6E+02 0.01 30.6 11.5 99 149-267 39-140 (668)
22 PF09747 DUF2052: Coiled-coil 29.6 14 0.0003 35.7 -0.8 30 529-558 152-181 (181)
23 smart00185 ARM Armadillo/beta- 24.7 1.4E+02 0.0031 20.0 4.0 34 187-221 7-40 (41)
24 PLN03200 cellulose synthase-in 23.5 1.9E+03 0.041 29.5 22.5 309 41-391 392-723 (2102)
25 PF11841 DUF3361: Domain of un 23.3 3.6E+02 0.0079 25.6 7.5 41 185-226 95-135 (160)
26 PTZ00429 beta-adaptin; Provisi 23.2 1.3E+03 0.028 27.4 14.3 144 103-267 52-208 (746)
27 KOG2274 Predicted importin 9 [ 22.4 1.4E+03 0.031 27.6 13.5 38 194-231 661-698 (1005)
28 PF06679 DUF1180: Protein of u 21.9 45 0.00098 31.7 1.2 31 528-558 126-159 (163)
29 PF10446 DUF2457: Protein of u 21.2 42 0.00091 36.6 0.9 12 538-549 104-115 (458)
30 cd00256 VATPase_H VATPase_H, r 20.6 5.5E+02 0.012 28.3 9.3 35 188-222 224-258 (429)
31 PHA02664 hypothetical protein; 20.3 64 0.0014 33.7 2.0 18 325-344 273-290 (534)
32 KOG3241 Uncharacterized conser 20.0 57 0.0012 31.3 1.4 11 323-334 58-68 (227)
No 1
>KOG2073 consensus SAP family cell cycle dependent phosphatase-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=5.7e-104 Score=882.34 Aligned_cols=554 Identities=38% Similarity=0.618 Sum_probs=513.4
Q ss_pred CCcCCCCCCCCChhhhhhcCCCCCHHHhhCCchHHHHHhhhhhHHHHHhhcHHHHHHHHHHhhcCCCCchHhhhcccccc
Q 008511 1 MFWRMAGLSTASPVETILDKENFTLEELLDEDDIIQECKALNGRLINFLRERAQVEQLIQYIVVEAPEDAEKRRTFKFPF 80 (563)
Q Consensus 1 MFW~~~g~~~~s~ld~lL~k~~~tLeelLdeddllqE~k~~N~kLi~fL~~~~~l~~Li~yi~~e~~e~~~~~~~~Kyp~ 80 (563)
|||++ +...++.++.+|+++.+||+++|||++++||||++|.||++||++|+++++|+.||+.+|++|.++|++||||+
T Consensus 1 ~f~~~-~~~~~~~~e~~l~~~~~~l~elldeed~~~e~~~~n~~l~~~l~~~e~~~~l~~~I~~e~~~d~D~k~~f~~p~ 79 (838)
T KOG2073|consen 1 MFWDF-DLESSAEIELLLEKESDTLDELLDEEDILQECKLQNSKLLNFLKRPEVLEKLVEYIIEEPEEDADKKTRFKYPN 79 (838)
T ss_pred Ccccc-ccchhHHHHHhcccchhHHHHhhhhHHHHHHHHhhHHHHHHHHhhHHHHHHHHhhhhcCCCcccchhhhhcccc
Confidence 89999 68888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccchHHHHHHhhCCHHHHHHHHhccCCCCCCChhhhhhHHHHHHHHHhcCchhHHHHHHhhhHHHHHHHHhhCc
Q 008511 81 VACEIFTCEVDIILKTLVEDEELMNLLFSFLEPKDSHSTLLAGYFSKVVICLLLRKTVPLMHYIKAHQEIMARLVDLIGI 160 (563)
Q Consensus 81 iasEILs~dv~~i~~~l~~~~~ll~~L~sfL~~~~~ln~~lagyF~KI~~~Ll~~k~~~~~~fl~~~~~~v~~llkHi~~ 160 (563)
|+||||||++|+|.++|++|+++|.+|||||+.+.|+||++++||+|+++.|+.|++.+++.|+++++++|+.|++||++
T Consensus 80 i~~Eilt~dv~~I~~~l~~de~ll~~l~s~l~~~~pln~~l~s~F~k~~~~Ll~~k~~~~~~f~k~~~~~v~~~l~hi~~ 159 (838)
T KOG2073|consen 80 ISCEILTSDVWPISEALVEDESLLSLLYSILEHEPPLNPLLSSFFSKINSRLLDRKTEQILEFIKKKDNFVDLFLKHIDI 159 (838)
T ss_pred HHHHHHhcCcHHHHHHHhccHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhcchHHHHHHHHhhhHHHHHHHHHcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHhccccccccchhhHHHHHhhhhHHHHHHHhcCCCCCHHHHHhHHHHHHHHHhc-----CchhHHhhcCCh
Q 008511 161 TSIMEVLIRLIGADEHMYTNFTESMQWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITRS-----APPALAAKISSP 235 (563)
Q Consensus 161 ~~I~dlLlrLI~~de~~~~~~~~~~~wL~e~~lI~~Li~~l~~~~~~e~~~naae~L~~Ii~~-----~p~~L~~~L~s~ 235 (563)
++|||||+|+++||++.++. +++++||+++++|+||+++++|+.++++|+||+++||+|+++ ||++|+++|+||
T Consensus 160 stlMD~Llkli~~de~~~p~-~~Viq~l~d~~li~kll~ll~ps~~~~~qsna~~~L~~iv~~s~~~~gPn~L~~qL~s~ 238 (838)
T KOG2073|consen 160 STLMDFLLKLISTDEPESPR-TDVIQWLNDQELIPKLLELLNPSKDPDVQSNAGQTLCAIVRLSRNQPGPNPLTKQLESP 238 (838)
T ss_pred cHHHHHHHHhccccCCCCch-HHHHHHHhhHHHHHHHHHHhCCccccchhHHHHHHHHHHHhcccccCCCCHHHHhhcCH
Confidence 99999999999999999864 999999999999999999999999999999999999999999 999999999999
Q ss_pred HHHHHHHHHHhcCCCCcceecchhhhhecccCccccccch--h-hhhhccccCCCccccCccchHHHHhhHHHHHHhhcc
Q 008511 236 NFIGRLFRHALENSRPKSVLVNSLSICISLLDPKRLTLGT--Y-YMFNRQLTHGSTVTVNPETVEGMLGRLGDLLKLLDV 312 (563)
Q Consensus 236 e~i~~Ll~~~l~~~~~~s~lv~~l~Ili~Ll~~~~~~~~~--~-~~~~~~~~~~~~~~~~p~~~~~il~~l~~l~~lL~~ 312 (563)
++|++|+++||+++.++|++|+||+|+|+++.++|..... | ..+..+..+ ....+.+.++++|.+||++|+++|.+
T Consensus 239 e~ieqLl~~ml~~~~s~s~lVs~i~vlI~ll~~~r~~~~~~~~~~i~~q~~~~-~d~~~~~~~l~~~~p~L~dF~~lL~~ 317 (838)
T KOG2073|consen 239 ETIEQLLKIMLEDGTSLSVLVSGIIVLISLLNPRRDTVETNSTTTILSQPPSE-RDPIVLNELLGAMEPRLGDFVQLLLE 317 (838)
T ss_pred HHHHHHHHHHccCCcchhhHHHHHHHHHHhcCcccccccccceeeeecCCccc-cCccchHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999876543 2 222222111 11234567788999999999999999
Q ss_pred CccccccccccCcccCCCchhhHHHHHHHHHHHhcCCHHHHHHHHHhhhHHHHHHHHhhccCCchhHHHHHHHHHHHhc-
Q 008511 313 SSEESSLLTTYGKLQPPLGKHRLKIVEFISVLLTVGSEAAEKELIRHGAVRRILDLFFEYPYNNFLHHHVENIILSCLE- 391 (563)
Q Consensus 313 ~~~~~~l~tt~G~~~~PLG~~RLkiveLia~LL~~~~~~i~~~L~~~~~~~~lldLFf~ypwNNfLH~~V~~ii~~il~- 391 (563)
++..+.++||||+++||||++|||||||||+||||+++.+.++++..+++...+|+||+||||||||++|+.||..++.
T Consensus 318 ~~~~~~l~tt~g~l~pPLG~~Rlki~eliaelL~~~~~~l~~el~~~~~~~r~lD~f~~y~~nN~lh~~~e~~I~~~~~~ 397 (838)
T KOG2073|consen 318 PEKLDLLETTYGELEPPLGFERLKIVELIAELLHCSNMTLLNELRAEGIAERLLDLFFEYPWNNFLHAQVESCIVENLSD 397 (838)
T ss_pred CccchhhhhhhhccCCCcchHHHHHHHHHHHHhccCcHHHHhHHhhhhhHHHHHHHHHhcchhHHHHHHHHHHHHHhhhc
Confidence 9988899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred --------CCChHHHHHHhhhCchHHHHHHhhhccccc--CCCCCCCCCCCCCCCCCchHHHHHHHH-HHHHHhc---CC
Q 008511 392 --------CKNAPLIEHLLHECNLVGKILEAEKNFTLK--DSNKPTVPAEGRLPPRIGNIGHLTRIS-NKLIQLG---NN 457 (563)
Q Consensus 392 --------~~~~~L~~~Lf~~~~li~~Il~~~~~~~~~--~~n~~~~~~~~~~~~r~GYmGhLt~IA-n~i~~~~---~~ 457 (563)
+.+..++.|++++|+++++|+++|+++... ...+++..+.|+...|.|||||++|+| |.++++. +.
T Consensus 398 ~~~~~~~~s~~~~~v~~~l~~c~l~~~~l~~~e~~e~~~~d~~~~~~~a~g~~~~~~g~~~h~~R~~pn~~vq~~~~~~~ 477 (838)
T KOG2073|consen 398 ETNNDSNISADNEIVDHLLQDCQLSDNILNQWEDSEEDEGDEDDPSDGAFGGKEYRNGPIGHLTRIAPNVGDQLKIKLED 477 (838)
T ss_pred cccccccCCCchHHHHHHHHHhhhhhhhhhcccccchhccccccchhhhhcCCcccCCccceeeecCcchhhhccccccc
Confidence 788999999999999999999999977654 223567778876557999999999999 9999964 47
Q ss_pred cHHHHHHHhc--chhHHHHHHHHhh------hhccchhhhhccCC-CCCccCCCCCCCCchhccCCcccHHHHhhhhhhh
Q 008511 458 NSEIHAYLQE--NSEWNDWQINVLS------KRNTLENIYQWACG-RPTALHDRGRDSDDDDYQNRDYDVAALANNLSQA 528 (563)
Q Consensus 458 ~~~i~~~l~~--~~~W~~f~~~~L~------~~N~~e~~~~~~~G-~p~~~~~~~~~~dddd~~~~~~~~~~~~~~~~~~ 528 (563)
...|++.|+. +..|..|...++. ++|+++++|.|.|| +++..+|+.+..|++++.+|+|++.+.+.++.++
T Consensus 478 ~~~i~~~L~~f~~~~w~~we~~v~~di~~~~~nn~v~~~y~~~~~~~~~~~id~~~~~~e~~~~d~~~~~~~~~~~i~~~ 557 (838)
T KOG2073|consen 478 TNIISTLLEGFPEEPWNNWEHNVLFDIEQQIFNNTVDNSYNDFLGYLTSNFIDLTRFNDEEEKADRDYDVMGHLDNIADH 557 (838)
T ss_pred hHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhcCccchhhhhhhhhccHHHHhhhccccchhhccccccchhhhhHhhhh
Confidence 7889999994 5788888877775 89999999999999 5999999999999998899999999999999998
Q ss_pred -hhhccccCCCchhcccCCCCCcccccccccc
Q 008511 529 -FRYGIYSNDDVDEAQGSLERDDEWIAFYKFE 559 (563)
Q Consensus 529 -~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (563)
|+|.++.+....++++..++ +..|||||.
T Consensus 558 ~F~~~~de~~~~~e~~~~~~~--~~q~~~dE~ 587 (838)
T KOG2073|consen 558 NFSINIDENSPNAEDLEVEDR--LIQYFDDEK 587 (838)
T ss_pred hccccccccCchhhhhhhhcc--ccccccccc
Confidence 99999999999999999999 999999974
No 2
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=100.00 E-value=8.2e-77 Score=642.48 Aligned_cols=345 Identities=35% Similarity=0.567 Sum_probs=303.1
Q ss_pred HHHHHhcCchhHHHHHHhhhHHHHHHHHhhCcchHHHHHHHHhccccccccchhhHHHHHhhhhHHHHHHHhcCCCCCHH
Q 008511 129 VICLLLRKTVPLMHYIKAHQEIMARLVDLIGITSIMEVLIRLIGADEHMYTNFTESMQWIEDTNVLEMIVDKFSSSDSPE 208 (563)
Q Consensus 129 ~~~Ll~~k~~~~~~fl~~~~~~v~~llkHi~~~~I~dlLlrLI~~de~~~~~~~~~~~wL~e~~lI~~Li~~l~~~~~~e 208 (563)
+++|+.||+.+|++||+++|++|++|++||++++|||||+|||++|++. .++++++||.+++||++|+++|+|+++++
T Consensus 1 n~~Ll~~k~~e~l~Fik~~~~~v~~llkHI~~~~ImDlLLklIs~d~~~--~~~~ilewL~~q~LI~~Li~~L~p~~~~~ 78 (475)
T PF04499_consen 1 NECLLDRKTEEMLEFIKSQPNFVDNLLKHIDTPAIMDLLLKLISTDKPE--SPTGILEWLAEQNLIPRLIDLLSPSYSSD 78 (475)
T ss_pred CchhhhcCHHHHHHHHHhCccHHHHHHHhcCCcHHHHHHHHHHccCccc--chHHHHHHHHHhCHHHHHHHHhCCCCCHH
Confidence 3689999999999999999999999999999999999999999999965 57899999999999999999999999999
Q ss_pred HHHhHHHHHHHHHhc------------CchhHHhhcCChHHHHHHHHHHhcCCCCcceecchhhhhecccCccccccchh
Q 008511 209 VHANAAETLCSITRS------------APPALAAKISSPNFIGRLFRHALENSRPKSVLVNSLSICISLLDPKRLTLGTY 276 (563)
Q Consensus 209 ~~~naae~L~~Ii~~------------~p~~L~~~L~s~e~i~~Ll~~~l~~~~~~s~lv~~l~Ili~Ll~~~~~~~~~~ 276 (563)
+|+|||++||+||++ +|++|+++|+|+++|++|+++||++.+ .|+++||++|+|+||| +++++|
T Consensus 79 ~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~-~s~lvn~v~IlieLIR---knnsdy 154 (475)
T PF04499_consen 79 VQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQG-GSSLVNGVSILIELIR---KNNSDY 154 (475)
T ss_pred HHHHHHHHHHHHHHHhhccccccccCCCccHHHHHHhChHHHHHHHHHHhcCCC-cchHHHHHHHHHHHHH---hccccc
Confidence 999999999999984 479999999999999999999997543 6999999999999995 678998
Q ss_pred hhh-hccccCCCccccCccchHHHH----hhHHHHHHhhccCccccccccccCcccCCCchhhHHHHHHHHHHHhcCCHH
Q 008511 277 YMF-NRQLTHGSTVTVNPETVEGML----GRLGDLLKLLDVSSEESSLLTTYGKLQPPLGKHRLKIVEFISVLLTVGSEA 351 (563)
Q Consensus 277 ~~~-~~~~~~~~~~~~~p~~~~~il----~~l~~l~~lL~~~~~~~~l~tt~G~~~~PLG~~RLkiveLia~LL~~~~~~ 351 (563)
+.. .......++...+|.+++.++ +||++|+++|..++..++++||+|.+.||||++|||||||||+||||+|++
T Consensus 155 ~~~~~~~~~~~~p~~rdpi~l~~lL~~~~~~l~~f~~lL~~~~~~~~l~Tt~G~l~~PLG~~RlkI~ELiAeLLhcsNm~ 234 (475)
T PF04499_consen 155 DEQLYTTIESHPPSERDPIYLGTLLKAFSPRLPDFHKLLLNPPKKPPLETTFGVLIPPLGFERLKICELIAELLHCSNMS 234 (475)
T ss_pred chhhccccccCCCCccchhhHHHHHHHHHHhHHHHHHHHhchhhccccccCCCCCCCCcchHHHHHHHHHHHHHhCCCcc
Confidence 853 111222334556787776655 799999999999999999999999999999999999999999999997654
Q ss_pred H-------------------------------------------------------------------------------
Q 008511 352 A------------------------------------------------------------------------------- 352 (563)
Q Consensus 352 i------------------------------------------------------------------------------- 352 (563)
+
T Consensus 235 LlN~~~~~~~~~~rd~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (475)
T PF04499_consen 235 LLNEPKGEEIVYERDGERERLLEQLQDALNDLEIDDEDIDDNSMDDESDSSEDSRELEVSNDSSDSEEEDESDEDSEDEE 314 (475)
T ss_pred ccCCccccchhcCcHHHHHHHHHHHHhhhhcccCCccccccccccccccCccccccccccccccccccccCCcccccccc
Confidence 2
Q ss_pred ------------------------HHHHHHhhhHHHHHHHHhhccCCchhHHHHHHHHHHHh-----cCCChHHHHHHhh
Q 008511 353 ------------------------EKELIRHGAVRRILDLFFEYPYNNFLHHHVENIILSCL-----ECKNAPLIEHLLH 403 (563)
Q Consensus 353 ------------------------~~~L~~~~~~~~lldLFf~ypwNNfLH~~V~~ii~~il-----~~~~~~L~~~Lf~ 403 (563)
..+|+++|++++|++|||+||||||||++||+||++|| .++++.|+.|||+
T Consensus 315 ~~~~~~~~~~~~~~~~~pvvGd~~k~~L~~~~il~~iLdLFfkypwNNFLH~~V~diIqqiln~~~~~~~n~~L~~~Lf~ 394 (475)
T PF04499_consen 315 EEESSDSEETEEKLRSNPVVGDYLKIELIELGILPTILDLFFKYPWNNFLHNVVEDIIQQILNGPMDESYNSFLVKHLFE 394 (475)
T ss_pred ccccccccccchhccCCCCcHHHHHHHHHHCCcHHHHHHHHhcCcchhHHHHHHHHHHHHHhCCCCcccccHHHHHHHHh
Confidence 24688899999999999999999999999999999999 4678999999999
Q ss_pred hCchHHHHHHhhhcccccCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCcHH--HHHHHh---cchhHHHHHHHH
Q 008511 404 ECNLVGKILEAEKNFTLKDSNKPTVPAEGRLPPRIGNIGHLTRISNKLIQLGNNNSE--IHAYLQ---ENSEWNDWQINV 478 (563)
Q Consensus 404 ~~~li~~Il~~~~~~~~~~~n~~~~~~~~~~~~r~GYmGhLt~IAn~i~~~~~~~~~--i~~~l~---~~~~W~~f~~~~ 478 (563)
+|+|++||+++|+.+.. ++.+.++|+|||||||+|||+|+++++..+. +...++ .+++|.+|++++
T Consensus 395 ~~~l~~~Il~~~~~~~~---------~~~~~~~RlGYMGHLtlIAn~ivk~~~~~~~~li~~~i~~~~~~~~W~~fv~~~ 465 (475)
T PF04499_consen 395 DCDLTDRILEGWKENDE---------SQEKPGPRLGYMGHLTLIANEIVKFSEKYPEELISPDIQEELQNEEWEEFVEGV 465 (475)
T ss_pred hccHHHHHHHhhhhchh---------hcccCCCCcCchhHHHHHHHHHHHHHhcCcHHHHHHHHhhhhhhhhhHHHHHCh
Confidence 99999999999987642 2223479999999999999999999876655 555555 368999999999
Q ss_pred hhhhccchhh
Q 008511 479 LSKRNTLENI 488 (563)
Q Consensus 479 L~~~N~~e~~ 488 (563)
|+++|+.+++
T Consensus 466 L~et~~~~n~ 475 (475)
T PF04499_consen 466 LAETNEKENA 475 (475)
T ss_pred HHHHHhhcCC
Confidence 9999998764
No 3
>KOG2073 consensus SAP family cell cycle dependent phosphatase-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.88 E-value=1.9e-08 Score=114.84 Aligned_cols=344 Identities=17% Similarity=0.202 Sum_probs=172.9
Q ss_pred hHHHHHhhcHHHHHHHHHHhhcCCCCchHhhhcccccchhhhhhcc-----chHHHHHHhhCCHHHHHHHH-hccCCCCC
Q 008511 43 GRLINFLRERAQVEQLIQYIVVEAPEDAEKRRTFKFPFVACEIFTC-----EVDIILKTLVEDEELMNLLF-SFLEPKDS 116 (563)
Q Consensus 43 ~kLi~fL~~~~~l~~Li~yi~~e~~e~~~~~~~~Kyp~iasEILs~-----dv~~i~~~l~~~~~ll~~L~-sfL~~~~~ 116 (563)
.-+++||..++.++++++.+--.-+.+.-.+. ...-|+|-+- ...++..+|.. ++.+.+|+ -+|+...+
T Consensus 180 ~~Viq~l~d~~li~kll~ll~ps~~~~~qsna----~~~L~~iv~~s~~~~gPn~L~~qL~s-~e~ieqLl~~ml~~~~s 254 (838)
T KOG2073|consen 180 TDVIQWLNDQELIPKLLELLNPSKDPDVQSNA----GQTLCAIVRLSRNQPGPNPLTKQLES-PETIEQLLKIMLEDGTS 254 (838)
T ss_pred HHHHHHHhhHHHHHHHHHHhCCccccchhHHH----HHHHHHHHhcccccCCCCHHHHhhcC-HHHHHHHHHHHccCCcc
Confidence 34444555556666666666543322222221 2222333222 33446666654 45555555 47888889
Q ss_pred CChhhhhhHHHHHHHHHhcCchhHH--HHHHhhh----------HHHHHHHHhhCcchHHHHHHHHhccccccccchhhH
Q 008511 117 HSTLLAGYFSKVVICLLLRKTVPLM--HYIKAHQ----------EIMARLVDLIGITSIMEVLIRLIGADEHMYTNFTES 184 (563)
Q Consensus 117 ln~~lagyF~KI~~~Ll~~k~~~~~--~fl~~~~----------~~v~~llkHi~~~~I~dlLlrLI~~de~~~~~~~~~ 184 (563)
++.+++|.+..|-...-+|.+.+.. ..+..|| .++..|..| +.||+--|......
T Consensus 255 ~s~lVs~i~vlI~ll~~~r~~~~~~~~~~i~~q~~~~~d~~~~~~~l~~~~p~-----L~dF~~lL~~~~~~-------- 321 (838)
T KOG2073|consen 255 LSVLVSGIIVLISLLNPRRDTVETNSTTTILSQPPSERDPIVLNELLGAMEPR-----LGDFVQLLLEPEKL-------- 321 (838)
T ss_pred hhhHHHHHHHHHHhcCcccccccccceeeeecCCccccCccchHHHHHHHHHH-----HHHHHHHhcCCccc--------
Confidence 9999999888777666666666553 2344333 233333333 34443333222221
Q ss_pred HHHHhhhhHHHHHHHhcCCCCCHHHHHhHHHHHHHHHhcCchhHHhhcCChHHHHHHHHHHhcCCCCc--ceec-chhhh
Q 008511 185 MQWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITRSAPPALAAKISSPNFIGRLFRHALENSRPK--SVLV-NSLSI 261 (563)
Q Consensus 185 ~~wL~e~~lI~~Li~~l~~~~~~e~~~naae~L~~Ii~~~p~~L~~~L~s~e~i~~Ll~~~l~~~~~~--s~lv-~~l~I 261 (563)
++++.=...|.|.-..++ -.+++++.++...+.-.+.+.+....+++++++..++..-+. ...+ ++|..
T Consensus 322 -------~~l~tt~g~l~pPLG~~R-lki~eliaelL~~~~~~l~~el~~~~~~~r~lD~f~~y~~nN~lh~~~e~~I~~ 393 (838)
T KOG2073|consen 322 -------DLLETTYGELEPPLGFER-LKIVELIAELLHCSNMTLLNELRAEGIAERLLDLFFEYPWNNFLHAQVESCIVE 393 (838)
T ss_pred -------hhhhhhhhccCCCcchHH-HHHHHHHHHHhccCcHHHHhHHhhhhhHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 123333334444333333 347888888888777678888888888877777766543211 1111 11111
Q ss_pred hecccCccccccchhhhhhccccCCCccccCccchHHHHhhHHHHHHhhcc---Cccc--cccccccCcccCC-CchhhH
Q 008511 262 CISLLDPKRLTLGTYYMFNRQLTHGSTVTVNPETVEGMLGRLGDLLKLLDV---SSEE--SSLLTTYGKLQPP-LGKHRL 335 (563)
Q Consensus 262 li~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~il~~l~~l~~lL~~---~~~~--~~l~tt~G~~~~P-LG~~RL 335 (563)
+.+ +. ..+.+ . ...+-+.+.+.+....-.-.+|.. .... ..-.-++|...+| .
T Consensus 394 ~~~--~~-~~~~~--~-----------~s~~~~~v~~~l~~c~l~~~~l~~~e~~e~~~~d~~~~~~~a~g~~~~----- 452 (838)
T KOG2073|consen 394 NLS--DE-TNNDS--N-----------ISADNEIVDHLLQDCQLSDNILNQWEDSEEDEGDEDDPSDGAFGGKEY----- 452 (838)
T ss_pred hhh--cc-ccccc--c-----------CCCchHHHHHHHHHhhhhhhhhhcccccchhccccccchhhhhcCCcc-----
Confidence 111 00 00000 0 000111222222211100011211 0000 0000111111111 0
Q ss_pred HHHHHHHHHHhcCCHHHH---HHHHHhhhHHHHHHHHhhccCCchhHHHHHHHHHHHhcC-----CChHHHHHHhhhCch
Q 008511 336 KIVEFISVLLTVGSEAAE---KELIRHGAVRRILDLFFEYPYNNFLHHHVENIILSCLEC-----KNAPLIEHLLHECNL 407 (563)
Q Consensus 336 kiveLia~LL~~~~~~i~---~~L~~~~~~~~lldLFf~ypwNNfLH~~V~~ii~~il~~-----~~~~L~~~Lf~~~~l 407 (563)
...-+..+++.....+. .++-..+++++++.+|..++|||++|+++++|+++++++ ++..+.. +
T Consensus 453 -~~g~~~h~~R~~pn~~vq~~~~~~~~~~i~~~L~~f~~~~w~~we~~v~~di~~~~~nn~v~~~y~~~~~~-------~ 524 (838)
T KOG2073|consen 453 -RNGPIGHLTRIAPNVGDQLKIKLEDTNIISTLLEGFPEEPWNNWEHNVLFDIEQQIFNNTVDNSYNDFLGY-------L 524 (838)
T ss_pred -cCCccceeeecCcchhhhccccccchHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhcCccchhhhhhhhh-------c
Confidence 00111112222211111 234467899999999999999999999999999999985 3444433 5
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCCCCCCCCchHHHHHHHHHHH
Q 008511 408 VGKILEAEKNFTLKDSNKPTVPAEGRLPPRIGNIGHLTRISNKL 451 (563)
Q Consensus 408 i~~Il~~~~~~~~~~~n~~~~~~~~~~~~r~GYmGhLt~IAn~i 451 (563)
+..+++.++.+.. .+ +...|.|||||+++||+.+
T Consensus 525 ~~~~id~~~~~~e---------~~-~~d~~~~~~~~~~~i~~~~ 558 (838)
T KOG2073|consen 525 TSNFIDLTRFNDE---------EE-KADRDYDVMGHLDNIADHN 558 (838)
T ss_pred cHHHHhhhccccc---------hh-hccccccchhhhhHhhhhh
Confidence 5667777765432 11 2468999999999999986
No 4
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=92.57 E-value=0.93 Score=50.27 Aligned_cols=131 Identities=12% Similarity=0.253 Sum_probs=98.6
Q ss_pred hccchHHHHHHhhCCHHHHHHHHhccCCCCCCChhhhhhHHHHHHHHHhc--CchhHHHHHHhhhHHHHHHHHhhC----
Q 008511 86 FTCEVDIILKTLVEDEELMNLLFSFLEPKDSHSTLLAGYFSKVVICLLLR--KTVPLMHYIKAHQEIMARLVDLIG---- 159 (563)
Q Consensus 86 Ls~dv~~i~~~l~~~~~ll~~L~sfL~~~~~ln~~lagyF~KI~~~Ll~~--k~~~~~~fl~~~~~~v~~llkHi~---- 159 (563)
|.-....+.+.|-..++++++|+.-++. |..+-++.|+++ +.+ .+..+++++.. .+++.+|+..++
T Consensus 5 l~~k~~e~l~Fik~~~~~v~~llkHI~~-----~~ImDlLLklIs--~d~~~~~~~ilewL~~-q~LI~~Li~~L~p~~~ 76 (475)
T PF04499_consen 5 LDRKTEEMLEFIKSQPNFVDNLLKHIDT-----PAIMDLLLKLIS--TDKPESPTGILEWLAE-QNLIPRLIDLLSPSYS 76 (475)
T ss_pred hhcCHHHHHHHHHhCccHHHHHHHhcCC-----cHHHHHHHHHHc--cCcccchHHHHHHHHH-hCHHHHHHHHhCCCCC
Confidence 3444566777888888899988888864 458889999998 554 46689999987 579999999985
Q ss_pred ---cchHHHHHHHHhcccccc------ccchhhHHHHHhhhhHHHHHHHhcCCCCCHHHHHhHHHHHHHHHhcC
Q 008511 160 ---ITSIMEVLIRLIGADEHM------YTNFTESMQWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITRSA 224 (563)
Q Consensus 160 ---~~~I~dlLlrLI~~de~~------~~~~~~~~~wL~e~~lI~~Li~~l~~~~~~e~~~naae~L~~Ii~~~ 224 (563)
..+++|+|.-+|+..... ...+.....-|.++..|++|++.+-.+.......|+..++.++||..
T Consensus 77 ~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~~s~lvn~v~IlieLIRkn 150 (475)
T PF04499_consen 77 SDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQGGSSLVNGVSILIELIRKN 150 (475)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccccCCCccHHHHHHhChHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhc
Confidence 357899999998764321 11234567788999999999998865333566678999999999854
No 5
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=92.55 E-value=5.6 Score=44.53 Aligned_cols=216 Identities=18% Similarity=0.254 Sum_probs=130.1
Q ss_pred HHhccCCCCCCChhhhhhHHHHHHHHHhcCchhHHHHHHhhhHHHHHHHHhhCcchHHHHHHHHhcc-ccccccchhhHH
Q 008511 107 LFSFLEPKDSHSTLLAGYFSKVVICLLLRKTVPLMHYIKAHQEIMARLVDLIGITSIMEVLIRLIGA-DEHMYTNFTESM 185 (563)
Q Consensus 107 L~sfL~~~~~ln~~lagyF~KI~~~Ll~~k~~~~~~fl~~~~~~v~~llkHi~~~~I~dlLlrLI~~-de~~~~~~~~~~ 185 (563)
+|+.|+.. ++-...+-++++..++......-+ +.....++...+.| ..+.|-.+.++.|.. .+. ..+..
T Consensus 43 lf~~L~~~---~~e~v~~~~~iL~~~l~~~~~~~l--~~~~~~~L~~gL~h-~~~~Vr~l~l~~l~~~~~~----~~~~~ 112 (503)
T PF10508_consen 43 LFDCLNTS---NREQVELICDILKRLLSALSPDSL--LPQYQPFLQRGLTH-PSPKVRRLALKQLGRIARH----SEGAA 112 (503)
T ss_pred HHHHHhhc---ChHHHHHHHHHHHHHHhccCHHHH--HHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHhcC----CHHHH
Confidence 66666644 334556667888888886544333 66677788888888 557888886664433 222 24568
Q ss_pred HHHhhhhHHHHHHHhcCCCCCHHHHHhHHHHHHHHHhcCchhHHhhcCChHHHHHHHHHHhcCCCCcceecchhhhhecc
Q 008511 186 QWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITRSAPPALAAKISSPNFIGRLFRHALENSRPKSVLVNSLSICISL 265 (563)
Q Consensus 186 ~wL~e~~lI~~Li~~l~~~~~~e~~~naae~L~~Ii~~~p~~L~~~L~s~e~i~~Ll~~~l~~~~~~s~lv~~l~Ili~L 265 (563)
+++.+.++++.++.++. ..+.++...|+.+|+.|.+..+ -...+-++..+..|-+.+-+.+ ..+-.....++..+
T Consensus 113 ~~~~~~~l~~~i~~~L~-~~d~~Va~~A~~~L~~l~~~~~--~~~~l~~~~~~~~L~~l~~~~~--~~vR~Rv~el~v~i 187 (503)
T PF10508_consen 113 QLLVDNELLPLIIQCLR-DPDLSVAKAAIKALKKLASHPE--GLEQLFDSNLLSKLKSLMSQSS--DIVRCRVYELLVEI 187 (503)
T ss_pred HHhcCccHHHHHHHHHc-CCcHHHHHHHHHHHHHHhCCch--hHHHHhCcchHHHHHHHHhccC--HHHHHHHHHHHHHH
Confidence 99999999999999884 4567788889999999886532 2234444554555544443211 11112222222222
Q ss_pred cCccccccchhhhhhccccCCCccccCccchHHHHh--hHHHHHHhhccCccccccccccCcccCCCchhhHHHHHHHHH
Q 008511 266 LDPKRLTLGTYYMFNRQLTHGSTVTVNPETVEGMLG--RLGDLLKLLDVSSEESSLLTTYGKLQPPLGKHRLKIVEFISV 343 (563)
Q Consensus 266 l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~il~--~l~~l~~lL~~~~~~~~l~tt~G~~~~PLG~~RLkiveLia~ 343 (563)
- ..+|+....+.. -++.+++.|..+. . ..|+.++|++..
T Consensus 188 ~-----------------------~~S~~~~~~~~~sgll~~ll~eL~~dD---i-------------Lvqlnalell~~ 228 (503)
T PF10508_consen 188 A-----------------------SHSPEAAEAVVNSGLLDLLLKELDSDD---I-------------LVQLNALELLSE 228 (503)
T ss_pred H-----------------------hcCHHHHHHHHhccHHHHHHHHhcCcc---H-------------HHHHHHHHHHHH
Confidence 1 112333333322 3444444443311 0 248889999999
Q ss_pred HHhcCCHHHHHHHHHhhhHHHHHHHHhhc---c-CCchh
Q 008511 344 LLTVGSEAAEKELIRHGAVRRILDLFFEY---P-YNNFL 378 (563)
Q Consensus 344 LL~~~~~~i~~~L~~~~~~~~lldLFf~y---p-wNNfL 378 (563)
|-.+ +.. .+.|.+.|+++.+.++...- | ++.++
T Consensus 229 La~~-~~g-~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~ 265 (503)
T PF10508_consen 229 LAET-PHG-LQYLEQQGIFDKLSNLLQDSEEDPRLSSLL 265 (503)
T ss_pred HHcC-hhH-HHHHHhCCHHHHHHHHHhccccCCcccchh
Confidence 9883 333 46788899999999988766 4 44444
No 6
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=83.59 E-value=80 Score=37.00 Aligned_cols=78 Identities=14% Similarity=0.204 Sum_probs=48.0
Q ss_pred hhHHHHHHHHHHHhcCCHHHHHHHHHhhhHHHHHHHHhhccCCchhHHHHHHHHHHHhcCCChHHHHHHhhhCchHHHHH
Q 008511 333 HRLKIVEFISVLLTVGSEAAEKELIRHGAVRRILDLFFEYPYNNFLHHHVENIILSCLECKNAPLIEHLLHECNLVGKIL 412 (563)
Q Consensus 333 ~RLkiveLia~LL~~~~~~i~~~L~~~~~~~~lldLFf~ypwNNfLH~~V~~ii~~il~~~~~~L~~~Lf~~~~li~~Il 412 (563)
.-|.+|-+++++- .++.....|.+.|++..+++|+-.+.=..=+=.|+.-+..+.+-. ..-...+.++.+++..++
T Consensus 551 l~LE~Vi~~gtla--~d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h--~~tr~~ll~~~~~~~yli 626 (708)
T PF05804_consen 551 LLLEVVILLGTLA--SDPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFH--EETREVLLKETEIPAYLI 626 (708)
T ss_pred HHHHHHHHHHHHH--CCHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcC--hHHHHHHHhccchHHHHH
Confidence 4566666666554 355666788999999999999988876554444444444444422 223345555566666666
Q ss_pred Hh
Q 008511 413 EA 414 (563)
Q Consensus 413 ~~ 414 (563)
+-
T Consensus 627 dL 628 (708)
T PF05804_consen 627 DL 628 (708)
T ss_pred HH
Confidence 54
No 7
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.34 E-value=44 Score=39.08 Aligned_cols=56 Identities=20% Similarity=0.237 Sum_probs=42.8
Q ss_pred HHHHHhhCCHHHHHHHHhccCCCCCCChhhhhhHHHHHHHHHhcCchhHHHHHHhhhHH
Q 008511 92 IILKTLVEDEELMNLLFSFLEPKDSHSTLLAGYFSKVVICLLLRKTVPLMHYIKAHQEI 150 (563)
Q Consensus 92 ~i~~~l~~~~~ll~~L~sfL~~~~~ln~~lagyF~KI~~~Ll~~k~~~~~~fl~~~~~~ 150 (563)
.|.+.++.+++....|.++|+....+ .-=|=.+.+++||..||-++=.-|...|-=
T Consensus 112 ~iae~fik~qd~I~lll~~~e~~DF~---VR~~aIqLlsalls~r~~e~q~~ll~~P~g 167 (970)
T KOG0946|consen 112 WIAEQFIKNQDNITLLLQSLEEFDFH---VRLYAIQLLSALLSCRPTELQDALLVSPMG 167 (970)
T ss_pred HHHHHHHcCchhHHHHHHHHHhhchh---hhhHHHHHHHHHHhcCCHHHHHHHHHCchh
Confidence 47889999999999999999876532 223446888899998888877777766643
No 8
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=62.02 E-value=27 Score=24.52 Aligned_cols=35 Identities=29% Similarity=0.332 Sum_probs=30.4
Q ss_pred HHHhhhhHHHHHHHhcCCCCCHHHHHhHHHHHHHHH
Q 008511 186 QWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSIT 221 (563)
Q Consensus 186 ~wL~e~~lI~~Li~~l~~~~~~e~~~naae~L~~Ii 221 (563)
+-+-+.+.|+.|++.|. +.+++++.+|+-.|..|.
T Consensus 6 ~~i~~~g~i~~Lv~ll~-~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 6 QAIVEAGGIPPLVQLLK-SPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHTTHHHHHHHHTT-SSSHHHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHc-CCCHHHHHHHHHHHHHHh
Confidence 45678899999999998 788999999999998875
No 9
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=60.17 E-value=37 Score=34.46 Aligned_cols=62 Identities=18% Similarity=0.163 Sum_probs=48.2
Q ss_pred ccCCCchhhHHHHHHHHHHHhcCCHHHHHHHHHhhhHHHHHHHHhhccCCchh-HHHHHHHHHHHh
Q 008511 326 LQPPLGKHRLKIVEFISVLLTVGSEAAEKELIRHGAVRRILDLFFEYPYNNFL-HHHVENIILSCL 390 (563)
Q Consensus 326 ~~~PLG~~RLkiveLia~LL~~~~~~i~~~L~~~~~~~~lldLFf~ypwNNfL-H~~V~~ii~~il 390 (563)
...||-.-||.-.-.|++|++.++..+..-|..+++++.|+...-. -+=+ ..+...|++.|+
T Consensus 134 ~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~---GSelSKtvA~fIlqKIl 196 (293)
T KOG3036|consen 134 KSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMES---GSELSKTVATFILQKIL 196 (293)
T ss_pred cCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhc---ccHHHHHHHHHHHHHHh
Confidence 4569999999999999999999999999999999999999976532 2333 333345555555
No 10
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=54.93 E-value=3.1e+02 Score=29.67 Aligned_cols=127 Identities=17% Similarity=0.267 Sum_probs=86.6
Q ss_pred hhCCHHHHHHHHhccCCCCCCChhhhhhHHHHHHHHHhcCchhHHHHHHhhhHHHHHHHHhhC---cchHHHHHHHHhcc
Q 008511 97 LVEDEELMNLLFSFLEPKDSHSTLLAGYFSKVVICLLLRKTVPLMHYIKAHQEIMARLVDLIG---ITSIMEVLIRLIGA 173 (563)
Q Consensus 97 l~~~~~ll~~L~sfL~~~~~ln~~lagyF~KI~~~Ll~~k~~~~~~fl~~~~~~v~~llkHi~---~~~I~dlLlrLI~~ 173 (563)
++++..++.-|-.++++..--.+.+-++=.-|+..++..-|..+ ..|... ++++.+++.+. +++-.|+|..|...
T Consensus 101 l~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~-~~l~e~-Gl~~~~L~~i~~~~i~~s~e~l~~lP~~ 178 (379)
T PF06025_consen 101 LIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSF-SILQEA-GLIDAFLDAITAKGILPSSEVLTSLPNV 178 (379)
T ss_pred ccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchh-HHHHHc-CChHHHHHHHhccCCCCcHHHHHHHHHH
Confidence 44446777777778877766777777777888888888877543 334332 46666777665 67777887777655
Q ss_pred ccccccchhhHHHHHhhhhHHHHHHHhcCCC-C-----CHHHHHhHHHHHHHHHhcCch
Q 008511 174 DEHMYTNFTESMQWIEDTNVLEMIVDKFSSS-D-----SPEVHANAAETLCSITRSAPP 226 (563)
Q Consensus 174 de~~~~~~~~~~~wL~e~~lI~~Li~~l~~~-~-----~~e~~~naae~L~~Ii~~~p~ 226 (563)
-....-|.. -++-..+.+.++++++.|... + ..+.-.+++..+.+++|..|.
T Consensus 179 l~AicLN~~-Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~ 236 (379)
T PF06025_consen 179 LSAICLNNR-GLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHPS 236 (379)
T ss_pred HhHHhcCHH-HHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCHH
Confidence 433322333 356667779999999988542 2 226777888899999998763
No 11
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=52.75 E-value=2.7e+02 Score=28.35 Aligned_cols=146 Identities=18% Similarity=0.265 Sum_probs=81.8
Q ss_pred HHHhhhhHHHHHHHhcCCCCCHHHHHhHHHHHHHHHhcCchhHHhhcCChHHHHHHHHHHhcCCCCcceecchhhhhecc
Q 008511 186 QWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITRSAPPALAAKISSPNFIGRLFRHALENSRPKSVLVNSLSICISL 265 (563)
Q Consensus 186 ~wL~e~~lI~~Li~~l~~~~~~e~~~naae~L~~Ii~~~p~~L~~~L~s~e~i~~Ll~~~l~~~~~~s~lv~~l~Ili~L 265 (563)
+...+-+.++.+.+.++. .++.++..|-..|..+-...++. .++ +..+.++.+.++...-...+-..|+..+..|
T Consensus 48 ~~Ir~~Ggi~lI~~lL~~-p~~~vr~~AL~aL~Nls~~~en~--~~I--k~~i~~Vc~~~~s~~lns~~Q~agLrlL~nL 122 (254)
T PF04826_consen 48 DIIRDLGGISLIGSLLND-PNPSVREKALNALNNLSVNDENQ--EQI--KMYIPQVCEETVSSPLNSEVQLAGLRLLTNL 122 (254)
T ss_pred HHHHHcCCHHHHHHHcCC-CChHHHHHHHHHHHhcCCChhhH--HHH--HHHHHHHHHHHhcCCCCCHHHHHHHHHHHcc
Confidence 445566777777776655 45666655544444332222221 121 3456666665554321112224556655544
Q ss_pred cCccccccchhhhhhccccCCCccccCccchHHHHhhHHHHHHhhccCccccccccccCcccCCCchhhHHHHHHHHHHH
Q 008511 266 LDPKRLTLGTYYMFNRQLTHGSTVTVNPETVEGMLGRLGDLLKLLDVSSEESSLLTTYGKLQPPLGKHRLKIVEFISVLL 345 (563)
Q Consensus 266 l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~il~~l~~l~~lL~~~~~~~~l~tt~G~~~~PLG~~RLkiveLia~LL 345 (563)
-- .+.+-.-+..++++|+.+|...+ |.+|.++++++.-|
T Consensus 123 tv------------------------~~~~~~~l~~~i~~ll~LL~~G~----------------~~~k~~vLk~L~nL- 161 (254)
T PF04826_consen 123 TV------------------------TNDYHHMLANYIPDLLSLLSSGS----------------EKTKVQVLKVLVNL- 161 (254)
T ss_pred CC------------------------CcchhhhHHhhHHHHHHHHHcCC----------------hHHHHHHHHHHHHh-
Confidence 11 01111123457888888886321 23677888876555
Q ss_pred hcCCHHHHHHHHHhhhHHHHHHHHhhccCCchh
Q 008511 346 TVGSEAAEKELIRHGAVRRILDLFFEYPYNNFL 378 (563)
Q Consensus 346 ~~~~~~i~~~L~~~~~~~~lldLFf~ypwNNfL 378 (563)
+.++..-++|+..++...++.||-.-.-+..|
T Consensus 162 -S~np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l 193 (254)
T PF04826_consen 162 -SENPDMTRELLSAQVLSSFLSLFNSSESKENL 193 (254)
T ss_pred -ccCHHHHHHHHhccchhHHHHHHccCCccHHH
Confidence 34666778999999999999999887555544
No 12
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=44.83 E-value=2.4e+02 Score=32.83 Aligned_cols=142 Identities=20% Similarity=0.278 Sum_probs=72.6
Q ss_pred hHHHHHHhhccCccccccccccCcccCCCchhhHHHHHHHHHHHhcCCHHHHHHHHHhhhHHHHHHHHhhccCCchhHHH
Q 008511 302 RLGDLLKLLDVSSEESSLLTTYGKLQPPLGKHRLKIVEFISVLLTVGSEAAEKELIRHGAVRRILDLFFEYPYNNFLHHH 381 (563)
Q Consensus 302 ~l~~l~~lL~~~~~~~~l~tt~G~~~~PLG~~RLkiveLia~LL~~~~~~i~~~L~~~~~~~~lldLFf~ypwNNfLH~~ 381 (563)
-|+.+..+|..+. .+..+-.+|.+ -||||=.|+.+.+.-. .+-. .-.+++.+. ||+.| +--+...
T Consensus 129 lLp~L~~~L~s~d-~n~~EgA~~AL--------~KIcEDsa~~lds~~~---~rpl-~~mipkfl~-f~~h~-spkiRs~ 193 (885)
T KOG2023|consen 129 LLPQLCELLDSPD-YNTCEGAFGAL--------QKICEDSAQFLDSDVL---TRPL-NIMIPKFLQ-FFKHP-SPKIRSH 193 (885)
T ss_pred HHHHHHHHhcCCc-ccccchhHHHH--------HHHHhhhHHHHhhhcc---cCch-HHhHHHHHH-HHhCC-ChhHHHH
Confidence 3556677776543 11122223333 3899998888875321 0000 012333333 55666 5556666
Q ss_pred HHHHHHHHhcCCC-------hHHHHHHhhh------------CchHHHHHHhhhcccccCCCCCCCCCCCCCCCCCchHH
Q 008511 382 VENIILSCLECKN-------APLIEHLLHE------------CNLVGKILEAEKNFTLKDSNKPTVPAEGRLPPRIGNIG 442 (563)
Q Consensus 382 V~~ii~~il~~~~-------~~L~~~Lf~~------------~~li~~Il~~~~~~~~~~~n~~~~~~~~~~~~r~GYmG 442 (563)
...||.+.+-..+ +..+.++|.- |+-.-++++-.- ---|-
T Consensus 194 A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~---------------------dkl~p 252 (885)
T KOG2023|consen 194 AVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRP---------------------DKLVP 252 (885)
T ss_pred HHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcH---------------------Hhccc
Confidence 6667766653332 2344555541 222223333210 12466
Q ss_pred HHHHHHHHHHHhcCC-cHHHHHHHhcchhHHHHHHHHhhh
Q 008511 443 HLTRISNKLIQLGNN-NSEIHAYLQENSEWNDWQINVLSK 481 (563)
Q Consensus 443 hLt~IAn~i~~~~~~-~~~i~~~l~~~~~W~~f~~~~L~~ 481 (563)
||-.|-++..+.... ++.| .|+.-+-|-.+.+..+.+
T Consensus 253 hl~~IveyML~~tqd~dE~V--ALEACEFwla~aeqpi~~ 290 (885)
T KOG2023|consen 253 HLDNIVEYMLQRTQDVDENV--ALEACEFWLALAEQPICK 290 (885)
T ss_pred chHHHHHHHHHHccCcchhH--HHHHHHHHHHHhcCcCcH
Confidence 788888887776543 2222 344457899998877543
No 13
>PF05924 SAMP: SAMP Motif; InterPro: IPR009224 This short region is found repeated in the mid region of the adenomatous polyposis proteins (APCs). This motif binds axin [].; GO: 0008013 beta-catenin binding, 0016055 Wnt receptor signaling pathway; PDB: 1EMU_B 2RQU_B.
Probab=41.95 E-value=13 Score=22.72 Aligned_cols=12 Identities=58% Similarity=1.016 Sum_probs=8.0
Q ss_pred CCchHHHHHhhh
Q 008511 30 DEDDIIQECKAL 41 (563)
Q Consensus 30 deddllqE~k~~ 41 (563)
|||++|+||-++
T Consensus 1 d~deiL~~CI~s 12 (20)
T PF05924_consen 1 DEDEILQECIGS 12 (20)
T ss_dssp --HHHHHHHHHC
T ss_pred CHHHHHHHHHHH
Confidence 567999999753
No 14
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=40.99 E-value=61 Score=34.03 Aligned_cols=192 Identities=16% Similarity=0.207 Sum_probs=98.1
Q ss_pred hhhhhhcC-CCCCHHHhhCCchHHHHHhhhhhHHHHHhhcHHHHHHHHHHhhcCCCCc-hH-----hhhcccccchhhhh
Q 008511 13 PVETILDK-ENFTLEELLDEDDIIQECKALNGRLINFLRERAQVEQLIQYIVVEAPED-AE-----KRRTFKFPFVACEI 85 (563)
Q Consensus 13 ~ld~lL~k-~~~tLeelLdeddllqE~k~~N~kLi~fL~~~~~l~~Li~yi~~e~~e~-~~-----~~~~~Kyp~iasEI 85 (563)
.++.+++. ++ +.+-.|.--..+-||+. ..-|..++...+++++...|+-.+.=+= .+ +..--++-.+++|+
T Consensus 127 ~~~~lv~~~~~-~~~iaL~cg~mlrEcir-he~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEf 204 (342)
T KOG1566|consen 127 ILDNLVKGYEN-TPEIALTCGNMLRECIR-HEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEF 204 (342)
T ss_pred HHHHHHhhhcc-chHHHHHHHHHHHHHHh-hHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 46777774 33 78888999999999997 7788899999999999999997653211 00 00111334455555
Q ss_pred hccchHHHHHHhhCCHHHHHHHHhccCCCCCCChhhhhhHHHHHHHHHhcCc--hhHHHHHHhhh--HHHHHHHH----h
Q 008511 86 FTCEVDIILKTLVEDEELMNLLFSFLEPKDSHSTLLAGYFSKVVICLLLRKT--VPLMHYIKAHQ--EIMARLVD----L 157 (563)
Q Consensus 86 Ls~dv~~i~~~l~~~~~ll~~L~sfL~~~~~ln~~lagyF~KI~~~Ll~~k~--~~~~~fl~~~~--~~v~~llk----H 157 (563)
|+.....+ ...-+++|-. .-|-+.+=.+.|.++.++.-++ ..|-.|+.+-. .++-.+++ .
T Consensus 205 l~~n~d~f----------f~e~~~~Ll~--s~Nyvtkrqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskn 272 (342)
T KOG1566|consen 205 LIRNYDNF----------FAEVYEKLLR--SENYVTKRQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKN 272 (342)
T ss_pred HHhChhhh----------HHHHHHHHhc--ccceehHHHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCcccc
Confidence 55543222 1222233322 1244555566666666555443 24555665322 23333332 2
Q ss_pred hCcchHHHHHHHHhccccccccchhhHHHHHhh-hhHHHHHHHhcCCCCCHHHHHh--HHHHHHHHHhc
Q 008511 158 IGITSIMEVLIRLIGADEHMYTNFTESMQWIED-TNVLEMIVDKFSSSDSPEVHAN--AAETLCSITRS 223 (563)
Q Consensus 158 i~~~~I~dlLlrLI~~de~~~~~~~~~~~wL~e-~~lI~~Li~~l~~~~~~e~~~n--aae~L~~Ii~~ 223 (563)
|...+.-. .|+-.+.... ++.+.+-|.. +.=+.+++.-+++...++.+-+ -+.++++|-+.
T Consensus 273 iQ~eAFhv--FKvfvAnpnK---~q~V~~IL~~Nr~KLl~~l~~f~~d~~~DeqF~dEk~~~i~eI~~l 336 (342)
T KOG1566|consen 273 IQLEAFHV--FKVFVANPNK---PQPVRDILVRNRPKLLELLHDFHTDRTEDEQFLDEKAYLIKEIRQL 336 (342)
T ss_pred chHHHHHH--HHHHhcCCCC---CchHHHHHHhCcHHHHHHHHHhCCCCCchhhhhhhHHHHHHHHHhc
Confidence 22222222 2222222111 2345555643 3334445566666554443322 24455555443
No 15
>PF04802 SMK-1: Component of IIS longevity pathway SMK-1; InterPro: IPR006887 This is a conserved region which characterises a number of eukaryotic proteins of unknown function.
Probab=40.21 E-value=1.4e+02 Score=29.05 Aligned_cols=134 Identities=18% Similarity=0.198 Sum_probs=74.2
Q ss_pred hhhhccchHHHHHHhhCCHHHHHHHHhccCCCCCCChhhhhhHHHHHHHHHhcCchhHHHHHH-hhhHHHHHHHHhhCcc
Q 008511 83 CEIFTCEVDIILKTLVEDEELMNLLFSFLEPKDSHSTLLAGYFSKVVICLLLRKTVPLMHYIK-AHQEIMARLVDLIGIT 161 (563)
Q Consensus 83 sEILs~dv~~i~~~l~~~~~ll~~L~sfL~~~~~ln~~lagyF~KI~~~Ll~~k~~~~~~fl~-~~~~~v~~llkHi~~~ 161 (563)
--++...-..|.+.++++ +....+...|+-++.....-|+|= ..+.++. .+-+-+. .+|.+...+=+.....
T Consensus 34 k~li~ln~~~i~e~llsd-e~i~~vvG~LEYDp~~~~~ka~hR-----~fL~~~~-~FkeVIpi~~~~l~~kIhqtyRlq 106 (193)
T PF04802_consen 34 KTLILLNDPEIFEILLSD-ENIMDVVGILEYDPEFPQPKANHR-----EFLKEKA-KFKEVIPIPDPELLSKIHQTYRLQ 106 (193)
T ss_pred HHHHHcCCchHHHHHhch-HHHHHHhhhhccCCcccccccchH-----HHHHhCC-CCceeeecCCHHHHHHHHHHHhHH
Confidence 344445566788888884 555667778877654332223321 1111111 1111111 1233433333333444
Q ss_pred hHHHHHHHHhcccccc--------ccchhhHHHHHhh-hhHHHHHHHhcC-CCCCHHHHHhHHHHHHHHHhcC
Q 008511 162 SIMEVLIRLIGADEHM--------YTNFTESMQWIED-TNVLEMIVDKFS-SSDSPEVHANAAETLCSITRSA 224 (563)
Q Consensus 162 ~I~dlLlrLI~~de~~--------~~~~~~~~~wL~e-~~lI~~Li~~l~-~~~~~e~~~naae~L~~Ii~~~ 224 (563)
-+-|+++. =..|++. ..|..++++++++ .+++++|.+.+. ++.+.+....+.-+|.+++..+
T Consensus 107 YLkDvvL~-r~lDd~~~s~L~s~I~~n~~~Iv~~l~~d~~fL~~Lf~~l~~~~~~~~~r~d~v~fL~e~c~~a 178 (193)
T PF04802_consen 107 YLKDVVLP-RFLDDNTFSTLNSLIFFNQVEIVNMLQDDENFLEELFAILKDPSTSDERRRDGVKFLHEFCSLA 178 (193)
T ss_pred HHHHHHcc-cccccHHHHHHHHHHHHhHHHHHHHHHhCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 44444443 1122221 1245678999976 569999999995 4557788888999999988654
No 16
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=37.30 E-value=6.3e+02 Score=28.23 Aligned_cols=285 Identities=18% Similarity=0.233 Sum_probs=157.6
Q ss_pred hhCCHHHHHHHHhccCCCCCCChhhhhhHHHHHHHHHhcCchhHHHHHHhhhHHHHHHHHhhCc------chHHHHHHHH
Q 008511 97 LVEDEELMNLLFSFLEPKDSHSTLLAGYFSKVVICLLLRKTVPLMHYIKAHQEIMARLVDLIGI------TSIMEVLIRL 170 (563)
Q Consensus 97 l~~~~~ll~~L~sfL~~~~~ln~~lagyF~KI~~~Ll~~k~~~~~~fl~~~~~~v~~llkHi~~------~~I~dlLlrL 170 (563)
++.+.+++..+..-|..+. .-.|.-=+|++..|...+.. ++-+- .++.+..|.+-+.. ..+.+++..+
T Consensus 114 ~~~~~~l~~~i~~~L~~~d---~~Va~~A~~~L~~l~~~~~~--~~~l~-~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i 187 (503)
T PF10508_consen 114 LLVDNELLPLIIQCLRDPD---LSVAKAAIKALKKLASHPEG--LEQLF-DSNLLSKLKSLMSQSSDIVRCRVYELLVEI 187 (503)
T ss_pred HhcCccHHHHHHHHHcCCc---HHHHHHHHHHHHHHhCCchh--HHHHh-CcchHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 3445566777777675432 34677778888888765432 22221 11223333332322 3466666666
Q ss_pred hccccccccchhhHHHHHhhhhHHHHHHHhcCCCCCHHHHHhHHHHHHHHHhcCchhHHhhcCChHHHHHHHHHHhcCCC
Q 008511 171 IGADEHMYTNFTESMQWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITRSAPPALAAKISSPNFIGRLFRHALENSR 250 (563)
Q Consensus 171 I~~de~~~~~~~~~~~wL~e~~lI~~Li~~l~~~~~~e~~~naae~L~~Ii~~~p~~L~~~L~s~e~i~~Ll~~~l~~~~ 250 (563)
-... .+..+...+.++++.+++.+.. .|.-++.||.++|.++.. ++ .-...|.+...+.+|.+.+.....
T Consensus 188 ~~~S-------~~~~~~~~~sgll~~ll~eL~~-dDiLvqlnalell~~La~-~~-~g~~yL~~~gi~~~L~~~l~~~~~ 257 (503)
T PF10508_consen 188 ASHS-------PEAAEAVVNSGLLDLLLKELDS-DDILVQLNALELLSELAE-TP-HGLQYLEQQGIFDKLSNLLQDSEE 257 (503)
T ss_pred HhcC-------HHHHHHHHhccHHHHHHHHhcC-ccHHHHHHHHHHHHHHHc-Ch-hHHHHHHhCCHHHHHHHHHhcccc
Confidence 3332 2456677788999999999987 778889999999999987 33 346788888888888887765432
Q ss_pred CcceecchhhhhecccCccccccchhhhhhccccCCCccccCccchHHHHhhHHHHHHhhcc--CccccccccccCcccC
Q 008511 251 PKSVLVNSLSICISLLDPKRLTLGTYYMFNRQLTHGSTVTVNPETVEGMLGRLGDLLKLLDV--SSEESSLLTTYGKLQP 328 (563)
Q Consensus 251 ~~s~lv~~l~Ili~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~il~~l~~l~~lL~~--~~~~~~l~tt~G~~~~ 328 (563)
. .-.+++-+ ...+. .+. .+ ....|..+ +...++|...|.. .+.. +
T Consensus 258 d--p~~~~~~l-~g~~~----------f~g-~l-----a~~~~~~v---~~~~p~~~~~l~~~~~s~d-----------~ 304 (503)
T PF10508_consen 258 D--PRLSSLLL-PGRMK----------FFG-NL-----ARVSPQEV---LELYPAFLERLFSMLESQD-----------P 304 (503)
T ss_pred C--Ccccchhh-hhHHH----------HHH-HH-----HhcChHHH---HHHHHHHHHHHHHHhCCCC-----------h
Confidence 1 10111000 00110 010 00 11123222 2233444432220 0000 0
Q ss_pred CCchhhHHHHHHHHHHHhcCCHHHHHHH-HH-hhhHHHHHHHHhhccCCch--hHHHHHHHHHHHhcCCCh-------HH
Q 008511 329 PLGKHRLKIVEFISVLLTVGSEAAEKEL-IR-HGAVRRILDLFFEYPYNNF--LHHHVENIILSCLECKNA-------PL 397 (563)
Q Consensus 329 PLG~~RLkiveLia~LL~~~~~~i~~~L-~~-~~~~~~lldLFf~ypwNNf--LH~~V~~ii~~il~~~~~-------~L 397 (563)
..|.-.++-++.+= +..+.. ..| .. .+.++.++..++.+-.+-- ++....+++..++....+ .+
T Consensus 305 ---~~~~~A~dtlg~ig-st~~G~-~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~ 379 (503)
T PF10508_consen 305 ---TIREVAFDTLGQIG-STVEGK-QLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDILSI 379 (503)
T ss_pred ---hHHHHHHHHHHHHh-CCHHHH-HHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHH
Confidence 12444566666553 333333 233 33 4588999999999998875 788888889999865433 33
Q ss_pred HHHHhh---hCchHHHHHHhhhcccccCCCCCCCCCCCCCCCCCchHHHHHHHHH
Q 008511 398 IEHLLH---ECNLVGKILEAEKNFTLKDSNKPTVPAEGRLPPRIGNIGHLTRISN 449 (563)
Q Consensus 398 ~~~Lf~---~~~li~~Il~~~~~~~~~~~n~~~~~~~~~~~~r~GYmGhLt~IAn 449 (563)
....|. +......++..-+ ++++. .|.+-++.|+-+|.
T Consensus 380 ~~~w~~~~~~~~~~~~l~~~~~-----------qPF~e---lr~a~~~~l~~l~~ 420 (503)
T PF10508_consen 380 TESWYESLSGSPLSNLLMSLLK-----------QPFPE---LRCAAYRLLQALAA 420 (503)
T ss_pred HHHHHHHhcCCchHHHHHHHhc-----------CCchH---HHHHHHHHHHHHhc
Confidence 444443 2222224444332 22332 77888888887775
No 17
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=36.32 E-value=1.6e+02 Score=25.72 Aligned_cols=67 Identities=19% Similarity=0.179 Sum_probs=52.6
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhhhHHHHHHHHhhccCCchhHHHHHHHHHHHhcCC--ChHHHHHH
Q 008511 334 RLKIVEFISVLLTVGSEAAEKELIRHGAVRRILDLFFEYPYNNFLHHHVENIILSCLECK--NAPLIEHL 401 (563)
Q Consensus 334 RLkiveLia~LL~~~~~~i~~~L~~~~~~~~lldLFf~ypwNNfLH~~V~~ii~~il~~~--~~~L~~~L 401 (563)
|.-+|++|+.|.+- +..+...+.+.|-++.+|+..--=++|=|+-....=+|...+++. |..++..|
T Consensus 3 K~~lvrlianl~~~-~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L 71 (102)
T PF09759_consen 3 KRDLVRLIANLCYK-NKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL 71 (102)
T ss_pred HHHHHHHHHHHHhC-CHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 66789999999975 567778889999999999998777888888887777888888763 33444444
No 18
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=32.56 E-value=3e+02 Score=24.95 Aligned_cols=57 Identities=14% Similarity=0.301 Sum_probs=45.8
Q ss_pred hHHHHHHHhcCCCCCHHHHHhHHHHHHHHHhcCchhHHhhcCChHHHHHHHHHHhcCC
Q 008511 192 NVLEMIVDKFSSSDSPEVHANAAETLCSITRSAPPALAAKISSPNFIGRLFRHALENS 249 (563)
Q Consensus 192 ~lI~~Li~~l~~~~~~e~~~naae~L~~Ii~~~p~~L~~~L~s~e~i~~Ll~~~l~~~ 249 (563)
..+..|-.+|.. .++.++..|-.+|-.++..+..++..++.+.+++..|.+.+-...
T Consensus 42 ea~~~l~krl~~-~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~ 98 (140)
T PF00790_consen 42 EAARALRKRLKH-GNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKK 98 (140)
T ss_dssp HHHHHHHHHHTT-SSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCC
Confidence 345555556654 778999999999999999888899999999999999888766543
No 19
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=32.50 E-value=2.9e+02 Score=28.81 Aligned_cols=55 Identities=20% Similarity=0.359 Sum_probs=35.8
Q ss_pred hhhhHHHHHHHHHhcCchhHHHHHHhhhHHHHHHHHhhC----------cchHHHHHHHHhccccc
Q 008511 121 LAGYFSKVVICLLLRKTVPLMHYIKAHQEIMARLVDLIG----------ITSIMEVLIRLIGADEH 176 (563)
Q Consensus 121 lagyF~KI~~~Ll~~k~~~~~~fl~~~~~~v~~llkHi~----------~~~I~dlLlrLI~~de~ 176 (563)
+.+|+-=++.++...+...+++.++.+. .|-..++|+. .+.|+.+|++-+..++.
T Consensus 115 li~FL~~~i~~~~~~k~~~Y~~LVk~N~-~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~ 179 (292)
T PF13929_consen 115 LISFLKLVIINLSSNKSFNYWDLVKRNK-IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDEN 179 (292)
T ss_pred HHHHHHHHHhccccccchHHHHHHHhhH-HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccc
Confidence 4555555555555555555788887764 4555555554 46799999998888554
No 20
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=31.45 E-value=6e+02 Score=27.01 Aligned_cols=167 Identities=13% Similarity=0.136 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhcCCCCchHhhhcccccchhhhhhccchHHHHHHhhCCHHHHHHHHhccCCCCCCChhhhhhHHHHHHH
Q 008511 52 RAQVEQLIQYIVVEAPEDAEKRRTFKFPFVACEIFTCEVDIILKTLVEDEELMNLLFSFLEPKDSHSTLLAGYFSKVVIC 131 (563)
Q Consensus 52 ~~~l~~Li~yi~~e~~e~~~~~~~~Kyp~iasEILs~dv~~i~~~l~~~~~ll~~L~sfL~~~~~ln~~lagyF~KI~~~ 131 (563)
...+.+|=..+.+....+....+ ...+|.|++.+| .|...+..-+-+.--.-.-.+-|..+
T Consensus 42 sK~L~~mK~IL~G~~e~ep~~e~---v~qLa~Ei~~~d----------------ll~~Li~~L~~L~fEsrKdv~~if~~ 102 (335)
T PF08569_consen 42 SKYLQQMKEILYGDGEPEPNPEQ---VAQLAQEIYRSD----------------LLYLLIRNLPKLDFESRKDVAQIFSN 102 (335)
T ss_dssp HHHHHHHHHHHHS-SS----HHH---HHHHHHHHHHHT----------------HHHHHHHTGGGS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCCCCHHH---HHHHHHHHHHhC----------------HHHHHHHHhhhCCCcccccHHHHHHH
Q ss_pred HHhcCchh----HHHHHHhh-hHHHHHHHHhhCcchHHHHHHHHhccccccccchhhHHHHHhhhhHHHHHHHhcCCCCC
Q 008511 132 LLLRKTVP----LMHYIKAH-QEIMARLVDLIGITSIMEVLIRLIGADEHMYTNFTESMQWIEDTNVLEMIVDKFSSSDS 206 (563)
Q Consensus 132 Ll~~k~~~----~~~fl~~~-~~~v~~llkHi~~~~I~dlLlrLI~~de~~~~~~~~~~~wL~e~~lI~~Li~~l~~~~~ 206 (563)
++.++.+. ..+|+..+ |++++.|++.-+.+.|+=.-=.++..=-. +.....++-+...+.++.+.+. ..+
T Consensus 103 llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~mlRec~k----~e~l~~~iL~~~~f~~ff~~~~-~~~ 177 (335)
T PF08569_consen 103 LLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDMLRECIK----HESLAKIILYSECFWKFFKYVQ-LPN 177 (335)
T ss_dssp HHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHHHHTT----SHHHHHHHHTSGGGGGHHHHTT-SSS
T ss_pred HHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHHHHHHh----hHHHHHHHhCcHHHHHHHHHhc-CCc
Q ss_pred HHHHHhHHHHHHHHHhcCchhHHhhcCChHHHHHHHHH
Q 008511 207 PEVHANAAETLCSITRSAPPALAAKISSPNFIGRLFRH 244 (563)
Q Consensus 207 ~e~~~naae~L~~Ii~~~p~~L~~~L~s~e~i~~Ll~~ 244 (563)
.++.+.|..+++++.+..+......| ....++++..
T Consensus 178 Fdiasdaf~t~~~llt~hk~~~a~fl--~~n~d~ff~~ 213 (335)
T PF08569_consen 178 FDIASDAFSTFKELLTRHKKLVAEFL--SNNYDRFFQK 213 (335)
T ss_dssp HHHHHHHHHHHHHHHHSSHHHHHHHH--HHTHHHHHHH
T ss_pred cHhHHHHHHHHHHHHhccHHHHHHHH--HHHHHHHHHH
No 21
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=29.80 E-value=4.6e+02 Score=30.64 Aligned_cols=99 Identities=24% Similarity=0.325 Sum_probs=57.5
Q ss_pred HHHHHHHHhh---CcchHHHHHHHHhccccccccchhhHHHHHhhhhHHHHHHHhcCCCCCHHHHHhHHHHHHHHHhcCc
Q 008511 149 EIMARLVDLI---GITSIMEVLIRLIGADEHMYTNFTESMQWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITRSAP 225 (563)
Q Consensus 149 ~~v~~llkHi---~~~~I~dlLlrLI~~de~~~~~~~~~~~wL~e~~lI~~Li~~l~~~~~~e~~~naae~L~~Ii~~~p 225 (563)
-+|..|+... +...++++|..+ .+|. ...+..+|=+.|... ..+ .-+--+||.+++..|
T Consensus 39 ~l~~~l~~y~~~t~s~~~~~il~~~---~~P~------------~K~~~~~l~~~~~~~--~~R-l~~L~Ll~~~v~~qp 100 (668)
T PF04388_consen 39 WLVNGLVDYYLSTNSQRALEILVGV---QEPH------------DKHLFDKLNDYFVKP--SYR-LQALTLLGHFVRSQP 100 (668)
T ss_pred HHHHHHHHHHhhcCcHHHHHHHHhc---CCcc------------HHHHHHHHHHHHcCc--hhH-HHHHHHHHHHHhcCC
Confidence 3455555543 567777877654 4431 123455554555322 222 235668899999887
Q ss_pred hhHHhhcCChHHHHHHHHHHhcCCCCcceecchhhhhecccC
Q 008511 226 PALAAKISSPNFIGRLFRHALENSRPKSVLVNSLSICISLLD 267 (563)
Q Consensus 226 ~~L~~~L~s~e~i~~Ll~~~l~~~~~~s~lv~~l~Ili~Ll~ 267 (563)
.-+. ++..-.-+..|++....+. ...++..++.+++.||-
T Consensus 101 ~~l~-~i~~t~Lf~~LLk~L~~D~-~~~~~~~al~~LimlLP 140 (668)
T PF04388_consen 101 PWLY-KILQTPLFKSLLKCLQFDT-SITVVSSALLVLIMLLP 140 (668)
T ss_pred chHH-HHhcChhHHHHHHHHhhcc-cHHHHHHHHHHHHHHhc
Confidence 6554 4555555667777665443 23556677888888773
No 22
>PF09747 DUF2052: Coiled-coil domain containing protein (DUF2052); InterPro: IPR018613 This entry includes coiled-coil domain-containing proteins of unkown function.
Probab=29.59 E-value=14 Score=35.67 Aligned_cols=30 Identities=23% Similarity=0.283 Sum_probs=18.4
Q ss_pred hhhccccCCCchhcccCCCCCccccccccc
Q 008511 529 FRYGIYSNDDVDEAQGSLERDDEWIAFYKF 558 (563)
Q Consensus 529 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ 558 (563)
|.|...|+++.=++..-..+|.||.|||++
T Consensus 152 fDY~~vD~~~~~Dd~~~~~~D~Ed~yFd~e 181 (181)
T PF09747_consen 152 FDYSKVDDNEEYDDLKEIERDAEDRYFDEE 181 (181)
T ss_pred CCcccccCCCCCCcHHHHHhhHHHhcccCC
Confidence 555555543333333345689999999985
No 23
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=24.73 E-value=1.4e+02 Score=20.04 Aligned_cols=34 Identities=26% Similarity=0.320 Sum_probs=26.8
Q ss_pred HHhhhhHHHHHHHhcCCCCCHHHHHhHHHHHHHHH
Q 008511 187 WIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSIT 221 (563)
Q Consensus 187 wL~e~~lI~~Li~~l~~~~~~e~~~naae~L~~Ii 221 (563)
-+.+.+.|+.|+..+. +.+++++.+|+..|..|.
T Consensus 7 ~i~~~g~i~~L~~ll~-~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 7 AVVDAGGLPALVELLK-SEDEEVVKEAAWALSNLS 40 (41)
T ss_pred HHHHCCCHHHHHHHHc-CCCHHHHHHHHHHHHHHc
Confidence 3456778999998887 567899999998888764
No 24
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=23.52 E-value=1.9e+03 Score=29.46 Aligned_cols=309 Identities=17% Similarity=0.133 Sum_probs=157.5
Q ss_pred hhhHHHHHhhcHHHHHHHHHHhhcCCCCchHhhhcccccchhhhhhccchHHHHHHhhCCHHHHHHHHhccCCCCCCChh
Q 008511 41 LNGRLINFLRERAQVEQLIQYIVVEAPEDAEKRRTFKFPFVACEIFTCEVDIILKTLVEDEELMNLLFSFLEPKDSHSTL 120 (563)
Q Consensus 41 ~N~kLi~fL~~~~~l~~Li~yi~~e~~e~~~~~~~~Kyp~iasEILs~dv~~i~~~l~~~~~ll~~L~sfL~~~~~ln~~ 120 (563)
.|+.+-..|...+.++-||+.+.....+-... .-.+--.|+.........+++.. .+..|.++|....+ .
T Consensus 392 gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~------Av~aL~~L~~~~~e~~~aIi~~g-gIp~LV~LL~s~s~-~-- 461 (2102)
T PLN03200 392 GNAYLSRKLNHAEAKKVLVGLITMATADVQEE------LIRALSSLCCGKGGLWEALGGRE-GVQLLISLLGLSSE-Q-- 461 (2102)
T ss_pred CChHHHHHHHhccchhhhhhhhccCCHHHHHH------HHHHHHHHhCCCHHHHHHHHHcC-cHHHHHHHHcCCCH-H--
Confidence 35655556666666777888777653321111 11111234555555556666554 46888899987542 1
Q ss_pred hhhhHHHHHHHHHhcCchhHHHHHHhhhHHHHHHHHhhCcc--hHHH----HHHHHhccccccccchhhHHHHHhhhhHH
Q 008511 121 LAGYFSKVVICLLLRKTVPLMHYIKAHQEIMARLVDLIGIT--SIME----VLIRLIGADEHMYTNFTESMQWIEDTNVL 194 (563)
Q Consensus 121 lagyF~KI~~~Ll~~k~~~~~~fl~~~~~~v~~llkHi~~~--~I~d----lLlrLI~~de~~~~~~~~~~~wL~e~~lI 194 (563)
.--+=.+++..|-......-...+ ..+.+..|++.+..+ .+-+ .|..+-. +. .+.-.-+.+.+.|
T Consensus 462 iQ~~A~~~L~nLa~~ndenr~aIi--eaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~-~~------~qir~iV~~aGAI 532 (2102)
T PLN03200 462 QQEYAVALLAILTDEVDESKWAIT--AAGGIPPLVQLLETGSQKAKEDSATVLWNLCC-HS------EDIRACVESAGAV 532 (2102)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHH--HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhC-Cc------HHHHHHHHHCCCH
Confidence 212224555555443333222222 123444444444321 2211 1222211 11 1122345567889
Q ss_pred HHHHHhcCCCCCHHHHHhHHHHHHHHHhcCch----hHHhhcCChH--HHH---HHHHHHhcCCCC-----c-ceecchh
Q 008511 195 EMIVDKFSSSDSPEVHANAAETLCSITRSAPP----ALAAKISSPN--FIG---RLFRHALENSRP-----K-SVLVNSL 259 (563)
Q Consensus 195 ~~Li~~l~~~~~~e~~~naae~L~~Ii~~~p~----~L~~~L~s~e--~i~---~Ll~~~l~~~~~-----~-s~lv~~l 259 (563)
+.|++.|... ++..+.+|+..|+.++..+.+ ++..-|.++. ... +.+.+++.-... . ..-..|+
T Consensus 533 ppLV~LL~sg-d~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL 611 (2102)
T PLN03200 533 PALLWLLKNG-GPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDAL 611 (2102)
T ss_pred HHHHHHHhCC-CHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccH
Confidence 9999998764 789999999999999876543 2333333322 111 122222221100 0 0012567
Q ss_pred hhhecccCccccccchhhhhhccccCCCccccCccchHHHH--hhHHHHHHhhccCccccccccccCcccCCCchhhHHH
Q 008511 260 SICISLLDPKRLTLGTYYMFNRQLTHGSTVTVNPETVEGML--GRLGDLLKLLDVSSEESSLLTTYGKLQPPLGKHRLKI 337 (563)
Q Consensus 260 ~Ili~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~il--~~l~~l~~lL~~~~~~~~l~tt~G~~~~PLG~~RLki 337 (563)
..+..|++... ...+..--.-+. ..+...+.....++ .-++.++++|.... . ..|-..
T Consensus 612 ~~Lv~LL~sgs--~~ikk~Aa~iLs--nL~a~~~d~~~avv~agaIpPLV~LLss~~-----------~-----~v~keA 671 (2102)
T PLN03200 612 RTLIQLLSSSK--EETQEKAASVLA--DIFSSRQDLCESLATDEIINPCIKLLTNNT-----------E-----AVATQS 671 (2102)
T ss_pred HHHHHHHcCCC--HHHHHHHHHHHH--HHhcCChHHHHHHHHcCCHHHHHHHHhcCC-----------h-----HHHHHH
Confidence 77777776421 111110000000 01112233333222 24566677775321 1 135567
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhhHHHHHHHHhhccCCchhHHHHHHHHHHHhc
Q 008511 338 VEFISVLLTVGSEAAEKELIRHGAVRRILDLFFEYPYNNFLHHHVENIILSCLE 391 (563)
Q Consensus 338 veLia~LL~~~~~~i~~~L~~~~~~~~lldLFf~ypwNNfLH~~V~~ii~~il~ 391 (563)
+.-+..|....++.-...+++.|+++-++++.-. ++.-+..+....+..++.
T Consensus 672 A~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~--~d~~v~e~Al~ALanLl~ 723 (2102)
T PLN03200 672 ARALAALSRSIKENRKVSYAAEDAIKPLIKLAKS--SSIEVAEQAVCALANLLS 723 (2102)
T ss_pred HHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhC--CChHHHHHHHHHHHHHHc
Confidence 7777888876666544567899999999999843 577777777777777765
No 25
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=23.30 E-value=3.6e+02 Score=25.57 Aligned_cols=41 Identities=20% Similarity=0.295 Sum_probs=32.2
Q ss_pred HHHHhhhhHHHHHHHhcCCCCCHHHHHhHHHHHHHHHhcCch
Q 008511 185 MQWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITRSAPP 226 (563)
Q Consensus 185 ~~wL~e~~lI~~Li~~l~~~~~~e~~~naae~L~~Ii~~~p~ 226 (563)
.++..++=-+++|+..|.. .+++++.||--++.++...+|+
T Consensus 95 y~~V~~evt~~~Li~hLq~-~~~~iq~naiaLinAL~~kA~~ 135 (160)
T PF11841_consen 95 YQLVEQEVTLESLIRHLQV-SNQEIQTNAIALINALFLKADD 135 (160)
T ss_pred HHHHhccCCHHHHHHHHHc-CCHHHHHHHHHHHHHHHhcCCh
Confidence 3455555567888888866 7789999999999999988764
No 26
>PTZ00429 beta-adaptin; Provisional
Probab=23.21 E-value=1.3e+03 Score=27.40 Aligned_cols=144 Identities=13% Similarity=0.116 Sum_probs=81.1
Q ss_pred HHHHHHhccCCCCCCChhhhhhHHHHHHHHHhcCch-------hHHHHHHhhhHH----HHHHHHhh--CcchHHHHHHH
Q 008511 103 LMNLLFSFLEPKDSHSTLLAGYFSKVVICLLLRKTV-------PLMHYIKAHQEI----MARLVDLI--GITSIMEVLIR 169 (563)
Q Consensus 103 ll~~L~sfL~~~~~ln~~lagyF~KI~~~Ll~~k~~-------~~~~fl~~~~~~----v~~llkHi--~~~~I~dlLlr 169 (563)
.+.++....-... -.+.+|.-|+..+-..+.. -+..|.+.+|+. +..|.|-+ .++.|-=+=+|
T Consensus 52 alKkvIa~mt~G~----DvS~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelalLaINtl~KDl~d~Np~IRaLALR 127 (746)
T PTZ00429 52 AVKRIIANMTMGR----DVSYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKALLAVNTFLQDTTNSSPVVRALAVR 127 (746)
T ss_pred HHHHHHHHHHCCC----CchHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4555555443322 1456677777644222211 123455556663 45555555 34566666677
Q ss_pred HhccccccccchhhHHHHHhhhhHHHHHHHhcCCCCCHHHHHhHHHHHHHHHhcCchhHHhhcCChHHHHHHHHHHhcCC
Q 008511 170 LIGADEHMYTNFTESMQWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITRSAPPALAAKISSPNFIGRLFRHALENS 249 (563)
Q Consensus 170 LI~~de~~~~~~~~~~~wL~e~~lI~~Li~~l~~~~~~e~~~naae~L~~Ii~~~p~~L~~~L~s~e~i~~Ll~~~l~~~ 249 (563)
.+++-... ++++.+ +.-+...+ ...++.+-.+|+-.+..|.+..|+ .+....++.+|.+ ++.++
T Consensus 128 tLs~Ir~~-----~i~e~l-----~~~lkk~L-~D~~pYVRKtAalai~Kly~~~pe----lv~~~~~~~~L~~-LL~D~ 191 (746)
T PTZ00429 128 TMMCIRVS-----SVLEYT-----LEPLRRAV-ADPDPYVRKTAAMGLGKLFHDDMQ----LFYQQDFKKDLVE-LLNDN 191 (746)
T ss_pred HHHcCCcH-----HHHHHH-----HHHHHHHh-cCCCHHHHHHHHHHHHHHHhhCcc----cccccchHHHHHH-HhcCC
Confidence 76664432 222222 22222333 357788999999988889888774 1223445666666 56654
Q ss_pred CCcceecchhhhhecccC
Q 008511 250 RPKSVLVNSLSICISLLD 267 (563)
Q Consensus 250 ~~~s~lv~~l~Ili~Ll~ 267 (563)
. -++..|++.++.++-+
T Consensus 192 d-p~Vv~nAl~aL~eI~~ 208 (746)
T PTZ00429 192 N-PVVASNAAAIVCEVND 208 (746)
T ss_pred C-ccHHHHHHHHHHHHHH
Confidence 3 3678888888887753
No 27
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=22.45 E-value=1.4e+03 Score=27.64 Aligned_cols=38 Identities=21% Similarity=0.151 Sum_probs=26.9
Q ss_pred HHHHHHhcCCCCCHHHHHhHHHHHHHHHhcCchhHHhh
Q 008511 194 LEMIVDKFSSSDSPEVHANAAETLCSITRSAPPALAAK 231 (563)
Q Consensus 194 I~~Li~~l~~~~~~e~~~naae~L~~Ii~~~p~~L~~~ 231 (563)
.+.++++.--+.+.+.-.|++|.|.+.|..++.++...
T Consensus 661 FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~ 698 (1005)
T KOG2274|consen 661 FPAVAKITLHSDDHETLQNATECLRALISVTLEQLLTW 698 (1005)
T ss_pred hHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhh
Confidence 44454554445667778899999999999887655543
No 28
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=21.86 E-value=45 Score=31.68 Aligned_cols=31 Identities=26% Similarity=0.337 Sum_probs=17.8
Q ss_pred hhhhccccCCCchhcccCCCCCcccc---ccccc
Q 008511 528 AFRYGIYSNDDVDEAQGSLERDDEWI---AFYKF 558 (563)
Q Consensus 528 ~~~y~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 558 (563)
--|||+.++..+.-.-.++++||||+ -||..
T Consensus 126 tRkYgvl~~~~~~~Em~pL~~ddedeD~TvFd~~ 159 (163)
T PF06679_consen 126 TRKYGVLTTRAENVEMAPLEEDDEDEDSTVFDAN 159 (163)
T ss_pred ceeecccCCCcccceecccCCCccccccceeeec
Confidence 35899999653333333666665544 56643
No 29
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=21.23 E-value=42 Score=36.64 Aligned_cols=12 Identities=8% Similarity=0.199 Sum_probs=6.8
Q ss_pred CchhcccCCCCC
Q 008511 538 DVDEAQGSLERD 549 (563)
Q Consensus 538 ~~~~~~~~~~~~ 549 (563)
|+|..|..+|++
T Consensus 104 DnE~GFAdSDDE 115 (458)
T PF10446_consen 104 DNEAGFADSDDE 115 (458)
T ss_pred cccccccccccc
Confidence 566666666433
No 30
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=20.65 E-value=5.5e+02 Score=28.31 Aligned_cols=35 Identities=9% Similarity=0.146 Sum_probs=17.1
Q ss_pred HhhhhHHHHHHHhcCCCCCHHHHHhHHHHHHHHHh
Q 008511 188 IEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITR 222 (563)
Q Consensus 188 L~e~~lI~~Li~~l~~~~~~e~~~naae~L~~Ii~ 222 (563)
+.+.++|+.+++.+..+.-+-+..=+--+|..++.
T Consensus 224 ~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~ 258 (429)
T cd00256 224 LKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLIS 258 (429)
T ss_pred hccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Confidence 33455666666666544444444434444444443
No 31
>PHA02664 hypothetical protein; Provisional
Probab=20.28 E-value=64 Score=33.70 Aligned_cols=18 Identities=28% Similarity=0.600 Sum_probs=10.9
Q ss_pred cccCCCchhhHHHHHHHHHH
Q 008511 325 KLQPPLGKHRLKIVEFISVL 344 (563)
Q Consensus 325 ~~~~PLG~~RLkiveLia~L 344 (563)
++.|||-..|- .-|++++
T Consensus 273 vlapplprdra--agllaei 290 (534)
T PHA02664 273 VLAPPLPRDRA--AGLLAEI 290 (534)
T ss_pred EecCCCCCccc--cchhhhh
Confidence 56788876653 3455554
No 32
>KOG3241 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.01 E-value=57 Score=31.25 Aligned_cols=11 Identities=45% Similarity=0.990 Sum_probs=5.5
Q ss_pred cCcccCCCchhh
Q 008511 323 YGKLQPPLGKHR 334 (563)
Q Consensus 323 ~G~~~~PLG~~R 334 (563)
||... ||...+
T Consensus 58 Y~KYK-pLt~ak 68 (227)
T KOG3241|consen 58 YGKYK-PLTEAK 68 (227)
T ss_pred hcccc-ccchhH
Confidence 45443 665553
Done!