BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008512
(563 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VTB|B Chain B, Structure Of Cryptochrome 3 - Dna Complex
Length = 525
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 82/351 (23%), Positives = 141/351 (40%), Gaps = 83/351 (23%)
Query: 34 PTAAATSKGRSGSAVIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILSRYSNEMLE 92
P++++ + G ++WF+ DLRV D+ L A S ++P+Y D R+ ++
Sbjct: 30 PSSSSVKRKGKGVTILWFRNDLRVLDNDALYKAWSSSDTILPVYCLDPRLF--HTTHFFN 87
Query: 93 L----------VIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVE 142
++ L DLRK+L ++G +L+IR G+ E ++ L ++ A +VFA +E
Sbjct: 88 FPKTGALRGGFLMECLVDLRKNLMKRGLNLLIRSGKPEEILPSLAKDFGARTVFAHKETC 147
Query: 143 YHLRQMMAIVDETLAKVSLVDGKPKICLWQTPFYDIKNLN----DLPVSHNEFRKLQRP- 197
+ +V++ L +V + +W + Y +L DLP + +FRK
Sbjct: 148 SEEVDVERLVNQGLKRVG--NSTKLELIWGSTMYHKDDLPFDVFDLPDVYTQFRKSVEAK 205
Query: 198 ---LTSPILPPTLAGAKLEADWGPLPTFDELKEFVNENPWKLEESWTLINNMSAETILTD 254
+S +P +L DWG +PT
Sbjct: 206 CSIRSSTRIPLSLGPTPSVDDWGDVPT--------------------------------- 232
Query: 255 KLSKLGKRSKRNLNNQHSPRKRLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRD 314
L KLG + VT VGG + V + + +
Sbjct: 233 -LEKLGVEPQE-----------------VTRGMRFVGGESAGVGRVFEYFWK-------K 267
Query: 315 DWQELQEKLRNAESRDGASFATLFGPALCLGIISRRGVHYEAIKFEKERNA 365
D ++ ++ RN G ++T F P L G IS R ++ E ++EKER A
Sbjct: 268 DLLKVYKETRNGML--GPDYSTKFSPWLAFGCISPRFIYEEVQRYEKERVA 316
>pdb|2J4D|A Chain A, Cryptochrome 3 From Arabidopsis Thaliana
pdb|2J4D|B Chain B, Cryptochrome 3 From Arabidopsis Thaliana
Length = 525
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 82/351 (23%), Positives = 141/351 (40%), Gaps = 83/351 (23%)
Query: 34 PTAAATSKGRSGSAVIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILSRYSNEMLE 92
P++++ + G ++WF+ DLRV D+ L A S ++P+Y D R+ ++
Sbjct: 29 PSSSSVKRKGKGVTILWFRNDLRVLDNDALYKAWSSSDTILPVYCLDPRLF--HTTHFFN 86
Query: 93 L----------VIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVE 142
++ L DLRK+L ++G +L+IR G+ E ++ L ++ A +VFA +E
Sbjct: 87 FPKTGALRGGFLMECLVDLRKNLMKRGLNLLIRSGKPEEILPSLAKDFGARTVFAHKETC 146
Query: 143 YHLRQMMAIVDETLAKVSLVDGKPKICLWQTPFYDIKNLN----DLPVSHNEFRKLQRP- 197
+ +V++ L +V + +W + Y +L DLP + +FRK
Sbjct: 147 SEEVDVERLVNQGLKRVG--NSTKLELIWGSTMYHKDDLPFDVFDLPDVYTQFRKSVEAK 204
Query: 198 ---LTSPILPPTLAGAKLEADWGPLPTFDELKEFVNENPWKLEESWTLINNMSAETILTD 254
+S +P +L DWG +PT
Sbjct: 205 CSIRSSTRIPLSLGPTPSVDDWGDVPT--------------------------------- 231
Query: 255 KLSKLGKRSKRNLNNQHSPRKRLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRD 314
L KLG + VT VGG + V + + +
Sbjct: 232 -LEKLGVEPQE-----------------VTRGMRFVGGESAGVGRVFEYFWK-------K 266
Query: 315 DWQELQEKLRNAESRDGASFATLFGPALCLGIISRRGVHYEAIKFEKERNA 365
D ++ ++ RN G ++T F P L G IS R ++ E ++EKER A
Sbjct: 267 DLLKVYKETRNGML--GPDYSTKFSPWLAFGCISPRFIYEEVQRYEKERVA 315
>pdb|2IJG|X Chain X, Crystal Structure Of Cryptochrome 3 From Arabidopsis
Thaliana
pdb|2VTB|A Chain A, Structure Of Cryptochrome 3 - Dna Complex
pdb|2VTB|C Chain C, Structure Of Cryptochrome 3 - Dna Complex
pdb|2VTB|D Chain D, Structure Of Cryptochrome 3 - Dna Complex
pdb|2VTB|E Chain E, Structure Of Cryptochrome 3 - Dna Complex
pdb|2VTB|F Chain F, Structure Of Cryptochrome 3 - Dna Complex
Length = 526
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 82/351 (23%), Positives = 141/351 (40%), Gaps = 83/351 (23%)
Query: 34 PTAAATSKGRSGSAVIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILSRYSNEMLE 92
P++++ + G ++WF+ DLRV D+ L A S ++P+Y D R+ ++
Sbjct: 30 PSSSSVKRKGKGVTILWFRNDLRVLDNDALYKAWSSSDTILPVYCLDPRLF--HTTHFFN 87
Query: 93 L----------VIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVE 142
++ L DLRK+L ++G +L+IR G+ E ++ L ++ A +VFA +E
Sbjct: 88 FPKTGALRGGFLMECLVDLRKNLMKRGLNLLIRSGKPEEILPSLAKDFGARTVFAHKETC 147
Query: 143 YHLRQMMAIVDETLAKVSLVDGKPKICLWQTPFYDIKNLN----DLPVSHNEFRKLQRP- 197
+ +V++ L +V + +W + Y +L DLP + +FRK
Sbjct: 148 SEEVDVERLVNQGLKRVG--NSTKLELIWGSTMYHKDDLPFDVFDLPDVYTQFRKSVEAK 205
Query: 198 ---LTSPILPPTLAGAKLEADWGPLPTFDELKEFVNENPWKLEESWTLINNMSAETILTD 254
+S +P +L DWG +PT
Sbjct: 206 CSIRSSTRIPLSLGPTPSVDDWGDVPT--------------------------------- 232
Query: 255 KLSKLGKRSKRNLNNQHSPRKRLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRD 314
L KLG + VT VGG + V + + +
Sbjct: 233 -LEKLGVEPQE-----------------VTRGMRFVGGESAGVGRVFEYFWK-------K 267
Query: 315 DWQELQEKLRNAESRDGASFATLFGPALCLGIISRRGVHYEAIKFEKERNA 365
D ++ ++ RN G ++T F P L G IS R ++ E ++EKER A
Sbjct: 268 DLLKVYKETRNGML--GPDYSTKFSPWLAFGCISPRFIYEEVQRYEKERVA 316
>pdb|1NP7|A Chain A, Crystal Structure Analysis Of Synechocystis Sp. Pcc6803
Cryptochrome
pdb|1NP7|B Chain B, Crystal Structure Analysis Of Synechocystis Sp. Pcc6803
Cryptochrome
Length = 489
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 74/330 (22%), Positives = 131/330 (39%), Gaps = 71/330 (21%)
Query: 46 SAVIWFKQDLRVDDHLGLVAASKYQ-AVVPLYVFDHRILSRYSNEMLE-------LVIFA 97
+ ++WF+ DLR+ DH L A K A+ +Y +D R ++ + + +
Sbjct: 7 TVLVWFRNDLRLHDHEPLHRALKSGLAITAVYCYDPRQFAQTHQGFAKTGPWRSNFLQQS 66
Query: 98 LEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLA 157
+++L +SL++ G+ L++ G E VI ++ +++ A +++ EV Q V+ L
Sbjct: 67 VQNLAESLQKVGNKLLVTTGLPEQVIPQIAKQINAKTIYYHREVT----QEELDVERNLV 122
Query: 158 KVSLVDGKPKICLWQTPFYDIKNL----NDLPVSHNEFRKLQRPLTSPILPPTLAGAKLE 213
K + G W + ++L DLP +FRK I P A ++L
Sbjct: 123 KQLTILGIEAKGYWGSTLCHPEDLPFSIQDLPDLFTKFRKDIEKKKISIRPCFFAPSQL- 181
Query: 214 ADWGPLPTFDELKEFVNENPWKLEESWTLINNMSAETILTDKLSKLGKRSKRNLNNQHSP 273
LP+ + E P E + I N ++L
Sbjct: 182 -----LPSPNIKLELTAPPP----EFFPQI-NFDHRSVL--------------------- 210
Query: 274 RKRLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRDDWQELQEKLRNAESRDGAS 333
GG A L LQ Y + G D++E + + GA
Sbjct: 211 ---------------AFQGGETAGLARLQDY--FWHGDRLKDYKETRNGMV------GAD 247
Query: 334 FATLFGPALCLGIISRRGVHYEAIKFEKER 363
+++ F P L LG +S R ++ E ++E+ER
Sbjct: 248 YSSKFSPWLALGCLSPRFIYQEVKRYEQER 277
>pdb|1TEZ|A Chain A, Complex Between Dna And The Dna Photolyase From Anacystis
Nidulans
pdb|1TEZ|B Chain B, Complex Between Dna And The Dna Photolyase From Anacystis
Nidulans
pdb|1TEZ|C Chain C, Complex Between Dna And The Dna Photolyase From Anacystis
Nidulans
pdb|1TEZ|D Chain D, Complex Between Dna And The Dna Photolyase From Anacystis
Nidulans
Length = 474
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 59/102 (57%), Gaps = 3/102 (2%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQA-VVPLYVFDHRILSRYSNEMLELVIFA--LEDLRKS 104
+ W ++DLR+ D++GL AA A ++ L+ D +IL + L++L++
Sbjct: 5 LFWHRRDLRLSDNIGLAAARAQSAQLIGLFCLDPQILQSADMAPARVAYLQGCLQELQQR 64
Query: 105 LKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLR 146
++ GS L++ G +++I +L ++++A +V+ +++E + R
Sbjct: 65 YQQAGSRLLLLQGDPQHLIPQLAQQLQAEAVYWNQDIEPYGR 106
>pdb|1OWL|A Chain A, Structure Of Apophotolyase From Anacystis Nidulans
pdb|1OWM|A Chain A, Data1:dna Photolyase RECEIVED X-Rays Dose 1.2 Exp15
PhotonsMM2
pdb|1OWN|A Chain A, Data3:dna Photolyase RECEIVED X-Rays Dose 4.8 Exp15
PhotonsMM2
pdb|1OWO|A Chain A, Data4:photoreduced Dna Photolyase RECEIVED X-Rays Dose
1.2 Exp15 PhotonsMM2
pdb|1OWP|A Chain A, Data6:photoreduced Dna Pholyase RECEIVED X-Rays Dose 4.8
Exp15 PhotonsMM2
pdb|1QNF|A Chain A, Structure Of Photolyase
Length = 484
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 59/102 (57%), Gaps = 3/102 (2%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQA-VVPLYVFDHRILSRYSNEMLELVIFA--LEDLRKS 104
+ W ++DLR+ D++GL AA A ++ L+ D +IL + L++L++
Sbjct: 6 LFWHRRDLRLSDNIGLAAARAQSAQLIGLFCLDPQILQSADMAPARVAYLQGCLQELQQR 65
Query: 105 LKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLR 146
++ GS L++ G +++I +L ++++A +V+ +++E + R
Sbjct: 66 YQQAGSRLLLLQGDPQHLIPQLAQQLQAEAVYWNQDIEPYGR 107
>pdb|1J1I|A Chain A, Crystal Structure Of A His-Tagged Serine Hydrolase
Involved In The Carbazole Degradation (Carc Enzyme)
Length = 296
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 68/133 (51%), Gaps = 7/133 (5%)
Query: 402 NEGVYSTRIWRWNGYQIQYTVAGKEGPAILLVHGFGAFLEHYRD--NIYDIADGGNRVWA 459
+E Y R G + +Y AGK G ++L+HG GA E + N+ I RV A
Sbjct: 12 SERAYVERFVNAGGVETRYLEAGK-GQPVILIHGGGAGAESEGNWRNVIPILARHYRVIA 70
Query: 460 ITLLGFGRSEKPNIVYTELMWSELLRDFTVEV-VGEPVHLIGNSIGGMFLSTNLTRGKLY 518
+ +LGFG++ KP+I YT+ L DF + V ++GNS+GG +T L L+
Sbjct: 71 MDMLGFGKTAKPDIEYTQDRRIRHLHDFIKAMNFDGKVSIVGNSMGG---ATGLGVSVLH 127
Query: 519 AFLLSVNYLLSRS 531
+ L++ L+ +
Sbjct: 128 SELVNALVLMGSA 140
>pdb|2E0I|A Chain A, Crystal Structure Of Archaeal Photolyase From Sulfolobus
Tokodaii With Two Fad Molecules: Implication Of A Novel
Light-Harvesting Cofactor
pdb|2E0I|B Chain B, Crystal Structure Of Archaeal Photolyase From Sulfolobus
Tokodaii With Two Fad Molecules: Implication Of A Novel
Light-Harvesting Cofactor
pdb|2E0I|C Chain C, Crystal Structure Of Archaeal Photolyase From Sulfolobus
Tokodaii With Two Fad Molecules: Implication Of A Novel
Light-Harvesting Cofactor
pdb|2E0I|D Chain D, Crystal Structure Of Archaeal Photolyase From Sulfolobus
Tokodaii With Two Fad Molecules: Implication Of A Novel
Light-Harvesting Cofactor
Length = 440
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 52/89 (58%), Gaps = 4/89 (4%)
Query: 51 FKQDLRVDDHLGL-VAASKYQAVVPLYVFDHRIL--SRYSNEM-LELVIFALEDLRKSLK 106
F++DLR++D+ GL A S+ V+P+++ D R L + Y +E + +I +L +L L+
Sbjct: 7 FRRDLRLEDNTGLNYALSECDRVIPVFIADPRQLINNPYKSEFAVSFMINSLLELDDELR 66
Query: 107 EQGSDLMIRFGRVENVIRELVEEVKATSV 135
++GS L + FG E V+ +V A V
Sbjct: 67 KKGSRLNVFFGEAEKVVSRFFNKVDAIYV 95
>pdb|3FY4|A Chain A, (6-4) Photolyase Crystal Structure
pdb|3FY4|B Chain B, (6-4) Photolyase Crystal Structure
pdb|3FY4|C Chain C, (6-4) Photolyase Crystal Structure
Length = 537
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 94/209 (44%), Gaps = 23/209 (11%)
Query: 44 SGSAVIWFKQDLRVDDHLGLVAASK-YQAVVPLYVFDHRIL-----------SRYSNEML 91
SGS +IWF++ LRV D+ L ASK + + P++V D + SR +
Sbjct: 5 SGS-LIWFRKGLRVHDNPALEYASKGSEFMYPVFVIDPHYMESDPSAFSPGSSRAGVNRI 63
Query: 92 ELVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAI 151
++ +L+DL SLK+ GS L++ G V+ ++E K + E + + + + +
Sbjct: 64 RFLLESLKDLDSSLKKLGSRLLVFKGEPGEVLVRCLQEWKVKRLCFEYDTDPYYQALDVK 123
Query: 152 VDETLAKVSLVDGKPKICLWQTPFYDI-KNLNDLPVSHNEFRKLQRPLTSPILPPTLAGA 210
V + + + P P + I KN P+S+ F K+ P+ A +
Sbjct: 124 VKDYASSTGVEVFSPVSHTLFNPAHIIEKNGGKPPLSYQSFLKVAG-------EPSCAKS 176
Query: 211 KLEADWGPLPTFDELKEF-VNENPWKLEE 238
+L + LP ++ ++E P LEE
Sbjct: 177 ELVMSYSSLPPIGDIGNLGISEVP-SLEE 204
>pdb|1DNP|A Chain A, Structure Of Deoxyribodipyrimidine Photolyase
pdb|1DNP|B Chain B, Structure Of Deoxyribodipyrimidine Photolyase
Length = 471
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 59/120 (49%), Gaps = 8/120 (6%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQA--VVPLYVFDHRILSRY--SNEMLELVIFALEDLRK 103
++WF+QDLR+ D+L L AA + + V+ LY+ R + + S EL+ L L+
Sbjct: 4 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLNGLQI 63
Query: 104 SLKEQGSDLMIR----FGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKV 159
+L E+G L+ R F +++++ E T +F + E + R V+ L V
Sbjct: 64 ALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERALRNV 123
>pdb|1U3C|A Chain A, Crystal Structure Of The Phr Domain Of Cryptochrome 1 From
Arabidopsis Thaliana
pdb|1U3D|A Chain A, Crystal Structure Of The Phr Domain Of Cryptochrome 1 From
Arabidopsis Thaliana With Amppnp Bound
Length = 509
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 61/120 (50%), Gaps = 12/120 (10%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVF-----DHRILSRYSNEMLELVIFALEDLR 102
++WF++DLRV+D+ L AA + V+ L+V+ H R S L+ +L L
Sbjct: 15 IVWFRRDLRVEDNPALAAAVRAGPVIALFVWAPEEEGHYHPGRVSRWWLK---NSLAQLD 71
Query: 103 KSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLV 162
SL+ G+ L+ + R + + L++ VK+T A + HL +++V + AK L
Sbjct: 72 SSLRSLGTCLITK--RSTDSVASLLDVVKSTG--ASQIFFNHLYDPLSLVRDHRAKDVLT 127
>pdb|3KD2|A Chain A, Crystal Structure Of The Cftr Inhibitory Factor Cif
pdb|3KD2|B Chain B, Crystal Structure Of The Cftr Inhibitory Factor Cif
pdb|3KD2|C Chain C, Crystal Structure Of The Cftr Inhibitory Factor Cif
pdb|3KD2|D Chain D, Crystal Structure Of The Cftr Inhibitory Factor Cif
Length = 301
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 9/95 (9%)
Query: 414 NGYQIQYTVAGKEGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNI 473
+G ++ Y V G +GP ++LVHGFG + + ++A V A L G G+SE P
Sbjct: 18 DGVKLHY-VKGGQGPLVMLVHGFGQTWYEWHQLMPELAKRFT-VIAPDLPGLGQSEPPKT 75
Query: 474 VYT----ELMWSELLRDFTVEVVGEPVHLIGNSIG 504
Y+ + +L R F+ + P L+ + IG
Sbjct: 76 GYSGEQVAVYLHKLARQFSPD---RPFDLVAHDIG 107
>pdb|3PI6|A Chain A, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
pdb|3PI6|B Chain B, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
pdb|3PI6|C Chain C, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
pdb|3PI6|D Chain D, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
Length = 301
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 9/95 (9%)
Query: 414 NGYQIQYTVAGKEGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNI 473
+G ++ Y V G +GP ++LVHGFG + + ++A V A L G G+SE P
Sbjct: 18 DGVKLHY-VKGGQGPLVMLVHGFGQTWYEWHQLMPELAKRFT-VIAPDLPGLGQSEPPKT 75
Query: 474 VYT----ELMWSELLRDFTVEVVGEPVHLIGNSIG 504
Y+ + +L R F+ + P L+ + IG
Sbjct: 76 GYSGEQVAVYLHKLARQFSPD---RPFDLVAHDIG 107
>pdb|3KDA|A Chain A, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
pdb|3KDA|B Chain B, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
pdb|3KDA|C Chain C, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
pdb|3KDA|D Chain D, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
Length = 301
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 9/95 (9%)
Query: 414 NGYQIQYTVAGKEGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNI 473
+G ++ Y V G +GP ++LVHGFG + + ++A V A L G G+SE P
Sbjct: 18 DGVKLHY-VKGGQGPLVMLVHGFGQTWYEWHQLMPELAKRFT-VIAPDLPGLGQSEPPKT 75
Query: 474 VYT----ELMWSELLRDFTVEVVGEPVHLIGNSIG 504
Y+ + +L R F+ + P L+ + IG
Sbjct: 76 GYSGEQVAVYLHKLARQFSPD---RPFDLVAHDIG 107
>pdb|3ANS|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANS|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
Length = 336
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Query: 427 GPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNIVY---TELMWSEL 483
GPA+ L HGF +R I +A G RV A+ + G+G S P + E++ E+
Sbjct: 39 GPAVCLCHGFPESWYSWRYQIPALAQAGYRVLAMDMKGYGESSAPPEIEEYCMEVLCKEM 98
Query: 484 LRDFTVEVVGEPVHLIGNSIGGMFL 508
+ + + V IG+ GGM +
Sbjct: 99 VTFLDKLGLSQAV-FIGHDWGGMLV 122
>pdb|3PDC|A Chain A, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
pdb|3PDC|B Chain B, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
Length = 344
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Query: 427 GPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNIVY---TELMWSEL 483
GPA+ L HGF +R I +A G RV A+ + G+G S P + E++ E+
Sbjct: 54 GPAVCLCHGFPESWYSWRYQIPALAQAGYRVLAMDMKGYGESSAPPEIEEYCMEVLCKEM 113
Query: 484 LRDFTVEVVGEPVHLIGNSIGGMFL 508
+ + + V IG+ GGM +
Sbjct: 114 VTFLDKLGLSQAV-FIGHDWGGMLV 137
>pdb|1S8O|A Chain A, Human Soluble Epoxide Hydrolase
pdb|1VJ5|A Chain A, Human Soluble Epoxide Hydrolase- N-Cyclohexyl-N'-(4-
Iodophenyl)urea Complex
pdb|1ZD2|P Chain P, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Ethanoic Acid Complex
pdb|1ZD3|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Butyric Acid Complex
pdb|1ZD4|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Hexanoic Acid Complex
pdb|1ZD5|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Heptanoic Acid Complex
pdb|3I1Y|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3I28|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3KOO|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3OTQ|A Chain A, Soluble Epoxide Hydrolase In Complex With Pyrazole
Antagonist
pdb|4HAI|A Chain A, Crystal Structure Of Human Soluble Epoxide Hydrolase
Complexed With N-
Cycloheptyl-1-(mesitylsulfonyl)piperidine-4-carboxamide
Length = 555
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Query: 427 GPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNIVY---TELMWSEL 483
GPA+ L HGF +R I +A G RV A+ + G+G S P + E++ E+
Sbjct: 258 GPAVCLCHGFPESWYSWRYQIPALAQAGYRVLAMDMKGYGESSAPPEIEEYCMEVLCKEM 317
Query: 484 LRDFTVEVVGEPVHLIGNSIGGMFL 508
+ + + V IG+ GGM +
Sbjct: 318 VTFLDKLGLSQAV-FIGHDWGGMLV 341
>pdb|3QIT|A Chain A, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|B Chain B, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|C Chain C, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|D Chain D, Thioesterase Domain From Curacin Biosynthetic Pathway
Length = 286
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Query: 426 EGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNIV--YTELMWSEL 483
E P +L +HG +++ +A G RV A L G GRS +V Y+ L +
Sbjct: 25 EHPVVLCIHGILEQGLAWQEVALPLAAQGYRVVAPDLFGHGRSSHLEMVTSYSSLTFLAQ 84
Query: 484 LRDFTVEVVGEPVHLIGNSIGGMF 507
+ E+ +P+ L+G+S+G M
Sbjct: 85 IDRVIQELPDQPLLLVGHSMGAML 108
>pdb|1CQZ|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CQZ|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CR6|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1CR6|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1EK1|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK1|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK2|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
pdb|1EK2|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
Length = 554
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 415 GYQIQYTVAGKEGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKP 471
G ++ + G GPA+ L HGF +R I +A G RV AI + G+G S P
Sbjct: 245 GIRLHFVEMGS-GPALCLCHGFPESWFSWRYQIPALAQAGFRVLAIDMKGYGDSSSP 300
>pdb|2D0D|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) A129v Mutant
Length = 282
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Query: 426 EGPAILLVHGFGAFLEHYRDNIYDIADGGN--RVWAITLLGFGRSEKP-NIVYTELMWSE 482
EG ++L+HG G + Y + I RV A ++GFG +++P N Y++ W +
Sbjct: 24 EGQPVILIHGSGPGVSAYANWRLTIPALSKFYRVIAPDMVGFGFTDRPENYNYSKDSWVD 83
Query: 483 LLRDFTVEVVGEPVHLIGNSIGG 505
+ + E H++GNS GG
Sbjct: 84 HIIGIMDALEIEKAHIVGNSFGG 106
>pdb|1C4X|A Chain A, 2-Hydroxy-6-Oxo-6-Phenylhexa-2,4-Dienoate Hydrolase (Bphd)
From Rhodococcus Sp. Strain Rha1
Length = 285
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 50/93 (53%), Gaps = 10/93 (10%)
Query: 422 VAG-KEGPAILLVHGFGA---FLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNIVYTE 477
VAG + PA++L+HG G ++R I D+A+ V A L+GFG+SE P
Sbjct: 23 VAGDPQSPAVVLLHGAGPGAHAASNWRPIIPDLAEN-FFVVAPDLIGFGQSEYPETYPGH 81
Query: 478 LM-WSELLRDFTVEVVG----EPVHLIGNSIGG 505
+M W + + + ++ E H++GNS+GG
Sbjct: 82 IMSWVGMRVEQILGLMNHFGIEKSHIVGNSMGG 114
>pdb|2ZJF|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Epoxide
Hydrolase B Complexed With An Inhibitor
Length = 362
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 425 KEGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEK 470
++GP ++L+HGF +R I +A G RV AI G+GRS K
Sbjct: 31 QQGPLVVLLHGFPESWYSWRHQIPALAGAGYRVVAIDQRGYGRSSK 76
>pdb|2E3J|A Chain A, The Crystal Structure Of Epoxide Hydrolase B (Rv1938) From
Mycobacterium Tuberculosis At 2.1 Angstrom
Length = 356
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 425 KEGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEK 470
++GP ++L+HGF +R I +A G RV AI G+GRS K
Sbjct: 25 QQGPLVVLLHGFPESWYSWRHQIPALAGAGYRVVAIDQRGYGRSSK 70
>pdb|2XT0|A Chain A, Dehalogenase Dppa From Plesiocystis Pacifica Sir-I
Length = 297
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 56/125 (44%), Gaps = 11/125 (8%)
Query: 413 WNGYQIQYTVAGKEGP-----AILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGR 467
+ G ++ Y EGP L +HG ++ YR + G RV A L GFGR
Sbjct: 30 FEGLRMHYV---DEGPRDAEHTFLCLHGEPSWSFLYRKMLPVFTAAGGRVVAPDLFGFGR 86
Query: 468 SEKP--NIVYTELMWSELLRDFTVEVVGEPVHLIGNSIGGMF-LSTNLTRGKLYAFLLSV 524
S+KP + VYT L F + E V L+ GG+ L+ + R +L L+ +
Sbjct: 87 SDKPTDDAVYTFGFHRRSLLAFLDALQLERVTLVCQDWGGILGLTLPVDRPQLVDRLIVM 146
Query: 525 NYLLS 529
N L+
Sbjct: 147 NTALA 151
>pdb|1IUN|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Hexagonal
pdb|1IUN|B Chain B, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Hexagonal
pdb|1IUO|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Complexed With
Acetates
pdb|1IUP|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Complexed With
Isobutyrates
pdb|1UK6|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With Propionate
pdb|1UK7|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With N-Butyrate
pdb|1UK8|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With N-valerate
pdb|1UK9|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With Isovalerate
pdb|1UKA|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With (S)-2-Methylbutyrate
pdb|1UKB|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With Benzoate
Length = 282
Score = 36.2 bits (82), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Query: 426 EGPAILLVHGFGAFLEHYRDNIYDIADGGN--RVWAITLLGFGRSEKP-NIVYTELMWSE 482
EG ++L+HG G + Y + I RV A ++GFG +++P N Y++ W +
Sbjct: 24 EGQPVILIHGSGPGVSAYANWRLTIPALSKFYRVIAPDMVGFGFTDRPENYNYSKDSWVD 83
Query: 483 LLRDFTVEVVGEPVHLIGNSIGG 505
+ + E H++GN+ GG
Sbjct: 84 HIIGIMDALEIEKAHIVGNAFGG 106
>pdb|1IQR|A Chain A, Crystal Structure Of Dna Photolyase From Thermus
Thermophilus
pdb|1IQU|A Chain A, Crystal Structure Of Photolyase-Thymine Complex
pdb|2J07|A Chain A, Thermus Dna Photolyase With 8-Hdf Antenna Chromophore
pdb|2J08|A Chain A, Thermus Dna Photolyase With 8-Iod-Riboflavin Antenna
Chromophore
pdb|2J09|A Chain A, Thermus Dna Photolyase With Fmn Antenna Chromophore
Length = 420
Score = 35.8 bits (81), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 7/96 (7%)
Query: 45 GSAVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDH---RILSRYSNEMLELVIFALEDL 101
G ++W + DLR+ DH L+ A VV L V D + R LE V L
Sbjct: 2 GPLLVWHRGDLRLHDHPALLEALARGPVVGLVVLDPNNLKTTPRRRAWFLENV----RAL 57
Query: 102 RKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFA 137
R++ + +G L + G + E +KA +V+A
Sbjct: 58 REAYRARGGALWVLEGLPWEKVPEAARRLKAKAVYA 93
>pdb|3U1T|A Chain A, Haloalkane Dehalogenase, Dmma, Of Marine Microbial Origin
pdb|3U1T|B Chain B, Haloalkane Dehalogenase, Dmma, Of Marine Microbial Origin
Length = 309
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Query: 401 SNEGVYSTRIWRWNGYQIQYTVAGKEGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAI 460
S+E ++ R G I Y G P +L +HG +R+ I + G R A
Sbjct: 4 SSEFPFAKRTVEVEGATIAYVDEGSGQP-VLFLHGNPTSSYLWRNIIPYVVAAGYRAVAP 62
Query: 461 TLLGFGRSEKPNIVY 475
L+G G S KP+I Y
Sbjct: 63 DLIGXGDSAKPDIEY 77
>pdb|3CXU|A Chain A, Structure Of A Y149f Mutant Of Epoxide Hydrolase From
Solanum Tuberosum
pdb|3CXU|B Chain B, Structure Of A Y149f Mutant Of Epoxide Hydrolase From
Solanum Tuberosum
Length = 328
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 414 NGYQIQYTVAGKEGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRS 468
NG + G EGP IL +HGF +R + +A+ G R A L G+G +
Sbjct: 19 NGLNMHLAELG-EGPTILFIHGFPELWYSWRHQMVYLAERGYRAVAPDLRGYGDT 72
>pdb|2CJP|A Chain A, Structure Of Potato (Solanum Tuberosum) Epoxide Hydrolase
I (Steh1)
pdb|2CJP|B Chain B, Structure Of Potato (Solanum Tuberosum) Epoxide Hydrolase
I (Steh1)
Length = 328
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 414 NGYQIQYTVAGKEGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRS 468
NG + G EGP IL +HGF +R + +A+ G R A L G+G +
Sbjct: 19 NGLNMHLAELG-EGPTILFIHGFPELWYSWRHQMVYLAERGYRAVAPDLRGYGDT 72
>pdb|1BEE|A Chain A, Haloalkane Dehalogenase Mutant With Trp 175 Replaced By
Tyr
pdb|1BEZ|A Chain A, Haloalkane Dehalogenase Mutant With Trp 175 Replaced By
Tyr At Ph 5
Length = 310
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 430 ILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFTV 489
L +HG + YR I A+ G RV A GFG+S+KP V E E R+F +
Sbjct: 50 FLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKP--VDEEDYTFEFHRNFLL 107
Query: 490 EVV 492
++
Sbjct: 108 ALI 110
>pdb|2DHD|A Chain A, Crystallographic Analysis Of The Catalytic Mechanism Of
Haloalkane Dehalogenase
Length = 310
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 430 ILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFTV 489
L +HG + YR I A+ G RV A GFG+S+KP V E E R+F +
Sbjct: 50 FLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKP--VDEEDYTFEFHRNFLL 107
Query: 490 EVV 492
++
Sbjct: 108 ALI 110
>pdb|1CIJ|A Chain A, Haloalkane Dehalogenase Soaked With High Concentration Of
Bromide
pdb|1BE0|A Chain A, Haloalkane Dehalogenase At Ph 5.0 Containing Acetic Acid
Length = 310
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 430 ILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFTV 489
L +HG + YR I A+ G RV A GFG+S+KP V E E R+F +
Sbjct: 50 FLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKP--VDEEDYTFEFHRNFLL 107
Query: 490 EVV 492
++
Sbjct: 108 ALI 110
>pdb|1EDB|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|1EDD|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|1EDE|A Chain A, Refined X-Ray Structures Of Haloalkane Dehalogenase At Ph
6.2 And Ph 8.2 And Implications For The Reaction
Mechanism
pdb|2DHC|A Chain A, Crystallographic Analysis Of The Catalytic Mechanism Of
Haloalkane Dehalogenase
pdb|2DHE|A Chain A, Crystallographic Analysis Of The Catalytic Mechanism Of
Haloalkane Dehalogenase
pdb|2EDA|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|2EDC|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|2HAD|A Chain A, Crystal Structure Of Haloalkane Dehalogenase: An Enzyme To
Detoxify Halogenated Alkanes
pdb|2PKY|X Chain X, The Effect Of Deuteration On Protein Structure A High
Resolution Comparison Of Hydrogenous And Perdeuterated
Haloalkane Dehalogenase
pdb|2YXP|X Chain X, The Effect Of Deuteration On Protein Structure A High
Resolution Comparison Of Hydrogenous And Perdeuterated
Haloalkane Dehalogenase
Length = 310
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 430 ILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFTV 489
L +HG + YR I A+ G RV A GFG+S+KP V E E R+F +
Sbjct: 50 FLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKP--VDEEDYTFEFHRNFLL 107
Query: 490 EVV 492
++
Sbjct: 108 ALI 110
>pdb|1HDE|A Chain A, Haloalkane Dehalogenase Mutant With Phe 172 Replaced With
Trp
pdb|1HDE|B Chain B, Haloalkane Dehalogenase Mutant With Phe 172 Replaced With
Trp
Length = 310
Score = 32.3 bits (72), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 430 ILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFTV 489
L +HG + YR I A+ G RV A GFG+S+KP V E E R+F +
Sbjct: 50 FLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKP--VDEEDYTFEFHRNFLL 107
Query: 490 EVV 492
++
Sbjct: 108 ALI 110
>pdb|1U2E|A Chain A, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|B Chain B, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|C Chain C, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|D Chain D, Crystal Structure Of The C-C Bond Hydrolase Mhpc
Length = 289
Score = 32.3 bits (72), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 46/93 (49%), Gaps = 4/93 (4%)
Query: 417 QIQYTVAGKEGPAILLVHGFGAFL---EHYRDNIYDIADGGNRVWAITLLGFGRSEKP-N 472
+I + G+ ++L+HG G ++ NI + + G RV + G+G+S+ N
Sbjct: 26 RIHFNDCGQGDETVVLLHGSGPGATGWANFSRNIDPLVEAGYRVILLDCPGWGKSDSVVN 85
Query: 473 IVYTELMWSELLRDFTVEVVGEPVHLIGNSIGG 505
+ + +L+ ++ +HL+GNS+GG
Sbjct: 86 SGSRSDLNARILKSVVDQLDIAKIHLLGNSMGG 118
>pdb|1B6G|A Chain A, Haloalkane Dehalogenase At Ph 5.0 Containing Chloride
Length = 310
Score = 32.3 bits (72), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 430 ILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFTV 489
L +HG + YR I A+ G RV A GFG+S+KP V E E R+F +
Sbjct: 50 FLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKP--VDEEDYTFEFHRNFLL 107
Query: 490 EVV 492
++
Sbjct: 108 ALI 110
>pdb|3B12|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase D104
Mutant From Burkholderia Sp. Fa1 In Complex With
Fluoroacetate
pdb|3B12|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase D104
Mutant From Burkholderia Sp. Fa1 In Complex With
Fluoroacetate
Length = 304
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 6/89 (6%)
Query: 422 VAGKEGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKP-----NIVYT 476
V G GPA+LL+HGF L H + + V L G+G S KP + Y+
Sbjct: 20 VVGGSGPALLLLHGFPQNL-HMWARVAPLLANEYTVVCADLRGYGGSSKPVGAPDHANYS 78
Query: 477 ELMWSELLRDFTVEVVGEPVHLIGNSIGG 505
+ R+ + E HL+G++ GG
Sbjct: 79 FRAMASDQRELMRTLGFERFHLVGHARGG 107
>pdb|1EHY|A Chain A, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|B Chain B, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|C Chain C, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|D Chain D, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
Length = 294
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 417 QIQYTVAGKEGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNI 473
+I Y G GP +LL+HG+ F + I +A+ + + L GFG SEKP++
Sbjct: 20 KIHYVREGA-GPTLLLLHGWPGFWWEWSKVIGPLAEHYDVI-VPDLRGFGDSEKPDL 74
>pdb|4F5Z|A Chain A, Crystal Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant (l95v, A172v)
Length = 299
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 54/110 (49%), Gaps = 12/110 (10%)
Query: 415 GYQIQYT-VAGKEGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNI 473
G ++ Y V ++G +L +HG +R+ I +A +R A L+G G+S+KP++
Sbjct: 19 GERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAPS-HRCIAPDLIGMGKSDKPDL 77
Query: 474 VYTELMWSELLR--DFTVEVVGEP-----VHLIGNSIGGMFLSTNLTRGK 516
Y + + +R D +E VG +H G+++G + N R K
Sbjct: 78 DY---FFDDHVRYLDAFIEAVGLEEVVLVIHDWGSALGFHWAKRNPERVK 124
>pdb|3A2M|A Chain A, Crystal Structure Of Dbja (Wild Type Type I)
pdb|3A2M|B Chain B, Crystal Structure Of Dbja (Wild Type Type I)
pdb|3A2N|A Chain A, Crystal Structure Of Dbja (Wild Type Type Ii P21)
pdb|3A2N|B Chain B, Crystal Structure Of Dbja (Wild Type Type Ii P21)
pdb|3A2N|E Chain E, Crystal Structure Of Dbja (Wild Type Type Ii P21)
pdb|3A2N|F Chain F, Crystal Structure Of Dbja (Wild Type Type Ii P21)
Length = 312
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 415 GYQIQYTVAG-KEGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNI 473
G + Y G ++ P +L +HG H NI + A L+GFG+S KP+I
Sbjct: 16 GSSMAYRETGAQDAPVVLFLHG-NPTSSHIWRNILPLVSPVAHCIAPDLIGFGQSGKPDI 74
Query: 474 VY 475
Y
Sbjct: 75 AY 76
>pdb|3AFI|E Chain E, Crystal Structure Of Dbja (His-Dbja)
pdb|3AFI|A Chain A, Crystal Structure Of Dbja (His-Dbja)
pdb|3AFI|B Chain B, Crystal Structure Of Dbja (His-Dbja)
pdb|3AFI|F Chain F, Crystal Structure Of Dbja (His-Dbja)
Length = 316
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 415 GYQIQYTVAG-KEGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNI 473
G + Y G ++ P +L +HG H NI + A L+GFG+S KP+I
Sbjct: 16 GSSMAYRETGAQDAPVVLFLHG-NPTSSHIWRNILPLVSPVAHCIAPDLIGFGQSGKPDI 74
Query: 474 VY 475
Y
Sbjct: 75 AY 76
>pdb|3A2L|A Chain A, Crystal Structure Of Dbja (Mutant Dbja Delta)
pdb|3A2L|B Chain B, Crystal Structure Of Dbja (Mutant Dbja Delta)
Length = 309
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 415 GYQIQYTVAG-KEGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNI 473
G + Y G ++ P +L +HG H NI + A L+GFG+S KP+I
Sbjct: 16 GSSMAYRETGAQDAPVVLFLHG-NPTSSHIWRNILPLVSPVAHCIAPDLIGFGQSGKPDI 74
Query: 474 VY 475
Y
Sbjct: 75 AY 76
>pdb|4A6P|A Chain A, Rada C-Terminal Atpase Domain From Pyrococcus Furiosus
pdb|4A6X|A Chain A, Rada C-Terminal Atpase Domain From Pyrococcus Furiosus
Bound To Atp
pdb|4A6X|B Chain B, Rada C-Terminal Atpase Domain From Pyrococcus Furiosus
Bound To Atp
pdb|4A74|A Chain A, Rada C-Terminal Atpase Domain From Pyrococcus Furiosus
Bound To Amppnp
pdb|4A74|B Chain B, Rada C-Terminal Atpase Domain From Pyrococcus Furiosus
Bound To Amppnp
pdb|4A7O|A Chain A, Rada C-Terminal Atpase Domain From Pyrococcus Furiosus
Bound To Adp
Length = 231
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 223 DELKEFVN-ENPWKLEESWTLINNMSAETILTDKLSKLGKRSKRNLNNQHSPRKRLDKSF 281
D++KE +N + P KL +L ++ +E I L++ ++ ++L + H D +
Sbjct: 114 DKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAV 173
Query: 282 FVTDKGNTVGGGTNAVLNALQAYLRYLEGTVR 313
FVT++ GG A L+ YLR +G R
Sbjct: 174 FVTNQVQANGGHILAHSATLRVYLRKGKGGKR 205
>pdb|1Y37|A Chain A, Structure Of Fluoroacetate Dehalogenase From Burkholderia
Sp. Fa1
pdb|1Y37|B Chain B, Structure Of Fluoroacetate Dehalogenase From Burkholderia
Sp. Fa1
Length = 304
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 6/89 (6%)
Query: 422 VAGKEGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKP-----NIVYT 476
V G GPA+LL+HGF L H + + V L G+G S KP + Y+
Sbjct: 20 VVGGSGPALLLLHGFPQNL-HMWARVAPLLANEYTVVCADLRGYGGSSKPVGAPDHANYS 78
Query: 477 ELMWSELLRDFTVEVVGEPVHLIGNSIGG 505
+ R+ + E HL+G+ GG
Sbjct: 79 FRAMASDQRELMRTLGFERFHLVGHDRGG 107
>pdb|3G9X|A Chain A, Structure Of Haloalkane Dehalogenase Dhaa14 Mutant I135f
From Rhodococcus Rhodochrous
Length = 299
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 415 GYQIQYT-VAGKEGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNI 473
G ++ Y V ++G +L +HG +R+ I +A +R A L+G G+S+KP++
Sbjct: 19 GERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAPS-HRCIAPDLIGMGKSDKPDL 77
Query: 474 VY 475
Y
Sbjct: 78 DY 79
>pdb|3ALE|A Chain A, A Type Iii Polyketide Synthase That Produces
Diarylheptanoid
pdb|3ALE|B Chain B, A Type Iii Polyketide Synthase That Produces
Diarylheptanoid
pdb|3ALE|C Chain C, A Type Iii Polyketide Synthase That Produces
Diarylheptanoid
pdb|3ALE|D Chain D, A Type Iii Polyketide Synthase That Produces
Diarylheptanoid
Length = 416
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 12/66 (18%)
Query: 45 GSAVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKS 104
GS+ I + D + G +AAS+ R+LS Y N VIFAL++LR+
Sbjct: 332 GSSTIMDQVDAALGLEPGKLAASR------------RVLSDYGNMSGATVIFALDELRRQ 379
Query: 105 LKEQGS 110
KE +
Sbjct: 380 RKEAAA 385
>pdb|4F60|A Chain A, Crystal Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant (t148l, G171q, A172v, C176f)
Length = 299
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 415 GYQIQYT-VAGKEGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNI 473
G ++ Y V ++G +L +HG +R+ I +A +R A L+G G+S+KP++
Sbjct: 19 GERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAPS-HRCIAPDLIGMGKSDKPDL 77
Query: 474 VY 475
Y
Sbjct: 78 DY 79
>pdb|1BN6|A Chain A, Haloalkane Dehalogenase From A Rhodococcus Species
pdb|1BN7|A Chain A, Haloalkane Dehalogenase From A Rhodococcus Species
Length = 294
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 415 GYQIQYT-VAGKEGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNI 473
G ++ Y V ++G +L +HG +R+ I +A +R A L+G G+S+KP++
Sbjct: 19 GERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAPS-HRCIAPDLIGMGKSDKPDL 77
Query: 474 VY 475
Y
Sbjct: 78 DY 79
>pdb|2V9Z|A Chain A, Structure Of The Rhodococcus Haloalkane Dehalogenase
Mutant With Enhanced Enantioselectivity
Length = 304
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 415 GYQIQYTVAG-KEGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNI 473
G ++ Y G ++G +L +HG +R+ I +A +R A L+G G+S+KP++
Sbjct: 19 GERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAPS-HRCIAPDLIGMGKSDKPDL 77
Query: 474 VY 475
Y
Sbjct: 78 DY 79
>pdb|3SK0|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Dhaa Mutant Dhaa12
Length = 311
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 415 GYQIQYTVAG-KEGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNI 473
G ++ Y G ++G +L +HG +R+ I +A +R A L+G G+S+KP++
Sbjct: 19 GERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAPS-HRCIAPDLIGMGKSDKPDL 77
Query: 474 VY 475
Y
Sbjct: 78 DY 79
>pdb|3FBW|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Dhaa Mutant C176y
Length = 299
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 415 GYQIQYT-VAGKEGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNI 473
G ++ Y V ++G +L +HG +R+ I +A +R A L+G G+S+KP++
Sbjct: 19 GERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAPS-HRCIAPDLIGMGKSDKPDL 77
Query: 474 VY 475
Y
Sbjct: 78 DY 79
>pdb|3FWH|A Chain A, Structure Of Haloalkane Dehalogenase Mutant Dha15
(I135fC176Y) FROM Rhodococcus Rhodochrous
Length = 299
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 415 GYQIQYT-VAGKEGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNI 473
G ++ Y V ++G +L +HG +R+ I +A +R A L+G G+S+KP++
Sbjct: 19 GERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAPS-HRCIAPDLIGMGKSDKPDL 77
Query: 474 VY 475
Y
Sbjct: 78 DY 79
>pdb|1XQV|A Chain A, Crystal Structure Of Inactive F1-Mutant G37a
Length = 293
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 44/105 (41%), Gaps = 18/105 (17%)
Query: 412 RWNGYQIQYTV--AGKEGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSE 469
+ NG I Y + A +E ++ +HG Y ++ D+ G V G GRSE
Sbjct: 11 KVNGIYIYYKLCKAPEEKAKLMTMHGAPGMSHDYLLSLRDMTKEGITVLFYDQFGCGRSE 70
Query: 470 KPNIVYTELMWSELLRDFTVEVV---------GEPVHLIGNSIGG 505
+P+ S+ D+ VE E V L+G+S GG
Sbjct: 71 EPD-------QSKFTIDYGVEEAEALRSKLFGNEKVFLMGSSYGG 108
>pdb|3RK4|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31
pdb|3RLT|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31 In Complex With 1, 2, 3 -
Trichloropropane
Length = 299
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 415 GYQIQYT-VAGKEGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNI 473
G ++ Y V ++G +L +HG +R+ I +A +R A L+G G+S+KP++
Sbjct: 19 GERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAPS-HRCIAPDLIGMGKSDKPDL 77
Query: 474 VY 475
Y
Sbjct: 78 DY 79
>pdb|1CQW|A Chain A, Nai Cocrystallised With Haloalkane Dehalogenase From A
Rhodococcus Species
Length = 295
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 415 GYQIQYT-VAGKEGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNI 473
G ++ Y V ++G +L +HG +R+ I +A +R A L+G G+S+KP++
Sbjct: 16 GERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAPS-HRCIAPDLIGMGKSDKPDL 74
Query: 474 VY 475
Y
Sbjct: 75 DY 76
>pdb|1YAL|A Chain A, Carica Papaya Chymopapain At 1.7 Angstroms Resolution
Length = 218
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/117 (19%), Positives = 46/117 (39%), Gaps = 27/117 (23%)
Query: 391 YWLMSLRSLRSNEGVYSTRIWRWNGYQIQYTVAGKEGPAI-------------------- 430
Y SL+ + +N GV++++++ + Q + K GP +
Sbjct: 67 YQTTSLQYV-ANNGVHTSKVYPYQAKQYKCRATDKPGPKVKITGYKRVPSNXETSFLGAL 125
Query: 431 ------LLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNIVYTELMWS 481
+LV G + Y+ ++D G A+T +G+G S+ N + + W
Sbjct: 126 ANQPLSVLVEAGGKPFQLYKSGVFDGPCGTKLDHAVTAVGYGTSDGKNYIIIKNSWG 182
>pdb|3OIT|A Chain A, Crystal Structure Of Curcuminoid Synthase Cus From Oryza
Sativa
pdb|3OIT|B Chain B, Crystal Structure Of Curcuminoid Synthase Cus From Oryza
Sativa
Length = 387
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 12/66 (18%)
Query: 45 GSAVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKS 104
GS+ I + D + G +AAS+ R+LS Y N VIFAL++LR+
Sbjct: 302 GSSTIMDQVDAALGLEPGKLAASR------------RVLSDYGNMSGATVIFALDELRRQ 349
Query: 105 LKEQGS 110
KE +
Sbjct: 350 RKEAAA 355
>pdb|4FWB|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31 In Complex With 1, 2, 3 -
Trichloropropane
Length = 292
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 415 GYQIQYT-VAGKEGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNI 473
G ++ Y V ++G +L +HG +R+ I +A +R A L+G G+S+KP++
Sbjct: 16 GERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAPS-HRCIAPDLIGMGKSDKPDL 74
Query: 474 VY 475
Y
Sbjct: 75 DY 76
>pdb|1XRM|A Chain A, Crystal Structure Of Active Site F1-Mutant E213q Soaked
With Peptide Ala-Phe
pdb|1XRN|A Chain A, Crystal Structure Of Active Site F1-Mutant E213q Soaked
With Peptide Phe-Ala
pdb|1XRO|A Chain A, Crystal Structure Of Active Site F1-Mutant E213q Soaked
With Peptide Phe-Leu
pdb|1XRP|A Chain A, Crystal Structure Of Active Site F1-mutant E213q Soaked
With Peptide Pro-leu-gly-gly
Length = 293
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 44/105 (41%), Gaps = 18/105 (17%)
Query: 412 RWNGYQIQYTV--AGKEGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSE 469
+ NG I Y + A +E ++ +HG Y ++ D+ G V G GRSE
Sbjct: 11 KVNGIYIYYKLCKAPEEKAKLMTMHGGPGMSHDYLLSLRDMTKEGITVLFYDQFGCGRSE 70
Query: 470 KPNIVYTELMWSELLRDFTVEVV---------GEPVHLIGNSIGG 505
+P+ S+ D+ VE E V L+G+S GG
Sbjct: 71 EPD-------QSKFTIDYGVEEAEALRSKLFGNEKVFLMGSSYGG 108
>pdb|1XRQ|A Chain A, Crystal Structure Of Active Site F1-Mutant E245q Soaked
With Peptide Phe-Leu
pdb|1XRR|A Chain A, Crystal Structure Of Active Site F1-mutant E245q Soaked
With Peptide Pro-pro
Length = 293
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 44/105 (41%), Gaps = 18/105 (17%)
Query: 412 RWNGYQIQYTV--AGKEGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSE 469
+ NG I Y + A +E ++ +HG Y ++ D+ G V G GRSE
Sbjct: 11 KVNGIYIYYKLCKAPEEKAKLMTMHGGPGMSHDYLLSLRDMTKEGITVLFYDQFGCGRSE 70
Query: 470 KPNIVYTELMWSELLRDFTVEVV---------GEPVHLIGNSIGG 505
+P+ S+ D+ VE E V L+G+S GG
Sbjct: 71 EPD-------QSKFTIDYGVEEAEALRSKLFGNEKVFLMGSSYGG 108
>pdb|1XRL|A Chain A, Crystal Structure Of Active Site F1-Mutant Y205f Complex
With Inhibitor Pck
Length = 293
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 44/105 (41%), Gaps = 18/105 (17%)
Query: 412 RWNGYQIQYTV--AGKEGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSE 469
+ NG I Y + A +E ++ +HG Y ++ D+ G V G GRSE
Sbjct: 11 KVNGIYIYYKLCKAPEEKAKLMTMHGGPGMSHDYLLSLRDMTKEGITVLFYDQFGCGRSE 70
Query: 470 KPNIVYTELMWSELLRDFTVEVV---------GEPVHLIGNSIGG 505
+P+ S+ D+ VE E V L+G+S GG
Sbjct: 71 EPD-------QSKFTIDYGVEEAEALRSKLFGNEKVFLMGSSYGG 108
>pdb|1MTZ|A Chain A, Crystal Structure Of The Tricorn Interacting Factor F1
pdb|1MU0|A Chain A, Crystal Structure Of The Tricorn Interacting Factor F1
Complex With Pck
Length = 293
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 44/105 (41%), Gaps = 18/105 (17%)
Query: 412 RWNGYQIQYTV--AGKEGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSE 469
+ NG I Y + A +E ++ +HG Y ++ D+ G V G GRSE
Sbjct: 11 KVNGIYIYYKLCKAPEEKAKLMTMHGGPGMSHDYLLSLRDMTKEGITVLFYDQFGCGRSE 70
Query: 470 KPNIVYTELMWSELLRDFTVEVV---------GEPVHLIGNSIGG 505
+P+ S+ D+ VE E V L+G+S GG
Sbjct: 71 EPD-------QSKFTIDYGVEEAEALRSKLFGNEKVFLMGSSYGG 108
>pdb|4B2I|A Chain A, Humanised Monomeric Rada In Complex With Indazole
pdb|4B2L|A Chain A, Humanised Monomeric Rada In Complex With L-methylester
Tryptophan
pdb|4B32|A Chain A, Humanised Monomeric Rada In Complex With Napht-1-ol
pdb|4B33|A Chain A, Humanised Monomeric Rada In Complex With Napht-2-ol
pdb|4B34|A Chain A, Humanised Monomeric Rada In Complex With 2-amino
Benzothiazole
pdb|4B35|A Chain A, Humanised Monomeric Rada In Complex With 4-methylester
Indole
pdb|4B3C|A Chain A, Humanised Monomeric Rada In Complex With 5-hydroxy Indole
pdb|4B3D|A Chain A, Humanised Monomeric Rada In Complex With 5-methyl Indole
pdb|4B3D|C Chain C, Humanised Monomeric Rada In Complex With 5-methyl Indole
pdb|4B3B|A Chain A, Humanised Monomeric Rada In Complex With Fhta Tetrapeptide
Length = 231
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 223 DELKEFVN-ENPWKLEESWTLINNMSAETILTDKLSKLGKRSKRNLNNQHSPRKRLDKSF 281
D +KE +N + P KL +L ++ +E I L++ ++ ++L + H D +
Sbjct: 114 DMIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAV 173
Query: 282 FVTDKGNTVGGGTNAVLNALQAYLRYLEGTVR 313
FVT++ GG A L+ YLR +G R
Sbjct: 174 FVTNQVQANGGHILAHSATLRVYLRKGKGGKR 205
>pdb|4F0J|A Chain A, Crystal Structure Of A Probable Hydrolytic Enzyme (Pa3053)
From Pseudomonas Aeruginosa Pao1 At 1.50 A Resolution
Length = 315
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 23/45 (51%)
Query: 427 GPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKP 471
G ILL HG + I +AD G RV A+ +GF +S KP
Sbjct: 46 GRTILLXHGKNFCAGTWERTIDVLADAGYRVIAVDQVGFCKSSKP 90
>pdb|3T79|A Chain A, Ndc10: A Platform For Inner Kinetochore Assembly In
Budding Yeast
pdb|3T79|D Chain D, Ndc10: A Platform For Inner Kinetochore Assembly In
Budding Yeast
Length = 402
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 70/162 (43%), Gaps = 19/162 (11%)
Query: 22 LRSRYKCVCCVSPTAAATSKGRSGSAVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHR 81
L +Y S A + A+IWF + L ++++ LV + +V L FD
Sbjct: 45 LSQKYIVKYIASHDDIAKDPLPTCDAMIWFSRALDIENNDVLVLQQRLYGLVKLLEFD-- 102
Query: 82 ILSRYSNEMLELVIFALEDLRKSLKEQGSDLM--IRFGRVENVIRELVE-EVK-ATSVFA 137
YSN VI L+ + +L +D + F ++ ++ L++ + K T+V
Sbjct: 103 ----YSN-----VIAILQKISINLWNPSTDSLQSKHFKTCQDKLKLLLDFQWKFNTNVSF 153
Query: 138 EEEVEYHLRQMMAIVDETLAKVSLV-DGKPKICL---WQTPF 175
E+ L+ + I+D+ K L KP L +Q+PF
Sbjct: 154 EDRTTVSLKDLQCILDDENGKCGLAHSSKPNFVLVPNFQSPF 195
>pdb|3SQI|A Chain A, Dna Binding Domain Of Ndc10
Length = 534
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 70/162 (43%), Gaps = 19/162 (11%)
Query: 22 LRSRYKCVCCVSPTAAATSKGRSGSAVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHR 81
L +Y S A + A+IWF + L ++++ LV + +V L FD
Sbjct: 45 LSQKYIVKYIASHDDIAKDPLPTCDAMIWFSRALDIENNDVLVLQQRLYGLVKLLEFD-- 102
Query: 82 ILSRYSNEMLELVIFALEDLRKSLKEQGSDLM--IRFGRVENVIRELVE-EVK-ATSVFA 137
YSN VI L+ + +L +D + F ++ ++ L++ + K T+V
Sbjct: 103 ----YSN-----VIAILQKISINLWNPSTDSLQSKHFKTCQDKLKLLLDFQWKFNTNVSF 153
Query: 138 EEEVEYHLRQMMAIVDETLAKVSLV-DGKPKICL---WQTPF 175
E+ L+ + I+D+ K L KP L +Q+PF
Sbjct: 154 EDRTTVSLKDLQCILDDENGKCGLAHSSKPNFVLVPNFQSPF 195
>pdb|1XQW|A Chain A, Crystal Structure Of F1-Mutant S105a Complex With Phe-Leu
pdb|1XQX|A Chain A, Crystal Structure Of F1-Mutant S105a Complex With Pck
pdb|1XQY|A Chain A, Crystal Structure Of F1-Mutant S105a Complex With Pro-Leu-
Gly-Gly
Length = 293
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 44/105 (41%), Gaps = 18/105 (17%)
Query: 412 RWNGYQIQYTV--AGKEGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSE 469
+ NG I Y + A +E ++ +HG Y ++ D+ G V G GRSE
Sbjct: 11 KVNGIYIYYKLCKAPEEKAKLMTMHGGPGMSHDYLLSLRDMTKEGITVLFYDQFGCGRSE 70
Query: 470 KPNIVYTELMWSELLRDFTVEVV---------GEPVHLIGNSIGG 505
+P+ S+ D+ VE E V L+G++ GG
Sbjct: 71 EPD-------QSKFTIDYGVEEAEALRSKLFGNEKVFLMGSAYGG 108
>pdb|1VKI|A Chain A, Crystal Structure Of A Putative Oligo-Nucleotide Binding
Protein (Atu3699, Agr_l_2275) From Agrobacterium
Tumefaciens Str. C58 At 1.60 A Resolution
pdb|1VKI|B Chain B, Crystal Structure Of A Putative Oligo-Nucleotide Binding
Protein (Atu3699, Agr_l_2275) From Agrobacterium
Tumefaciens Str. C58 At 1.60 A Resolution
Length = 181
Score = 28.9 bits (63), Expect = 7.1, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 97 ALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETL 156
A+ DL+ K G+ + FGR E ++ L + +VF + RQ+ ++D L
Sbjct: 82 AVVDLKSVHKTIGAASRVSFGRPEKMLEYLGVVPGSVTVFG--AINDTARQVTFVLDSDL 139
Query: 157 AKVSLVDGKP 166
+ LV+G P
Sbjct: 140 LENELVNGHP 149
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,744,324
Number of Sequences: 62578
Number of extensions: 704976
Number of successful extensions: 1859
Number of sequences better than 100.0: 80
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 52
Number of HSP's that attempted gapping in prelim test: 1803
Number of HSP's gapped (non-prelim): 98
length of query: 563
length of database: 14,973,337
effective HSP length: 104
effective length of query: 459
effective length of database: 8,465,225
effective search space: 3885538275
effective search space used: 3885538275
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)