Query 008512
Match_columns 563
No_of_seqs 370 out of 3887
Neff 8.0
Searched_HMMs 46136
Date Thu Mar 28 13:05:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008512.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008512hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02765 crypto_DASH cryptoch 100.0 3.5E-43 7.6E-48 376.9 25.1 252 46-362 2-270 (429)
2 COG0415 PhrB Deoxyribodipyrimi 100.0 8.9E-42 1.9E-46 356.3 21.8 246 45-362 2-257 (461)
3 TIGR03556 photolyase_8HDF deox 100.0 2.1E-41 4.6E-46 365.4 23.5 252 46-360 2-263 (471)
4 TIGR00591 phr2 photolyase PhrI 100.0 2E-39 4.2E-44 350.0 23.4 248 45-358 23-279 (454)
5 TIGR02766 crypt_chrom_pln cryp 100.0 1.7E-39 3.6E-44 352.3 21.8 243 48-357 1-255 (475)
6 PRK10674 deoxyribodipyrimidine 100.0 4.5E-39 9.6E-44 347.4 22.7 241 47-359 4-259 (472)
7 PF00875 DNA_photolyase: DNA p 100.0 2.2E-32 4.8E-37 255.5 14.3 155 47-205 1-164 (165)
8 KOG0133 Deoxyribodipyrimidine 99.9 3E-26 6.5E-31 241.9 14.7 150 45-198 5-162 (531)
9 PLN02824 hydrolase, alpha/beta 99.8 5.7E-18 1.2E-22 172.7 16.9 122 405-527 7-136 (294)
10 PRK00870 haloalkane dehalogena 99.8 2.3E-17 5.1E-22 169.0 17.4 123 404-526 17-148 (302)
11 PRK03592 haloalkane dehalogena 99.8 2.6E-17 5.7E-22 167.9 17.6 122 403-526 4-126 (295)
12 TIGR02240 PHA_depoly_arom poly 99.7 1.6E-17 3.4E-22 167.9 15.2 122 406-528 2-126 (276)
13 KOG4178 Soluble epoxide hydrol 99.7 1.1E-16 2.5E-21 159.5 15.1 127 403-529 19-149 (322)
14 PLN02679 hydrolase, alpha/beta 99.7 4E-16 8.6E-21 164.1 16.5 117 409-526 64-189 (360)
15 PRK03204 haloalkane dehalogena 99.7 4.9E-16 1.1E-20 158.2 16.5 120 405-526 13-134 (286)
16 TIGR03056 bchO_mg_che_rel puta 99.7 5.2E-16 1.1E-20 155.7 16.4 118 408-526 8-128 (278)
17 PRK10749 lysophospholipase L2; 99.7 5.4E-16 1.2E-20 161.2 16.9 121 407-527 32-165 (330)
18 PLN02578 hydrolase 99.7 8.4E-16 1.8E-20 161.3 16.6 117 408-526 68-185 (354)
19 PLN02385 hydrolase; alpha/beta 99.6 2.1E-15 4.6E-20 157.9 14.8 118 410-527 66-196 (349)
20 PLN02965 Probable pheophorbida 99.6 1.3E-15 2.9E-20 152.1 12.4 99 429-527 5-106 (255)
21 PLN02211 methyl indole-3-aceta 99.6 2E-15 4.4E-20 152.6 13.4 115 413-527 4-121 (273)
22 PLN03084 alpha/beta hydrolase 99.6 4.3E-15 9.3E-20 156.6 16.2 117 411-528 110-232 (383)
23 PHA02857 monoglyceride lipase; 99.6 5E-15 1.1E-19 149.4 15.2 120 409-528 4-132 (276)
24 TIGR03611 RutD pyrimidine util 99.6 3.2E-15 7E-20 147.3 13.1 108 419-527 2-114 (257)
25 PLN03087 BODYGUARD 1 domain co 99.6 1.1E-14 2.3E-19 156.9 17.5 123 404-526 174-307 (481)
26 PRK10673 acyl-CoA esterase; Pr 99.6 5.6E-15 1.2E-19 146.8 14.0 98 426-525 15-113 (255)
27 PRK06489 hypothetical protein; 99.6 4.1E-15 9E-20 156.4 13.5 116 412-527 46-188 (360)
28 COG2267 PldB Lysophospholipase 99.6 9.2E-15 2E-19 149.2 15.6 126 406-531 10-145 (298)
29 PLN02298 hydrolase, alpha/beta 99.6 5.9E-15 1.3E-19 153.2 14.5 119 409-527 36-168 (330)
30 TIGR03343 biphenyl_bphD 2-hydr 99.6 9.1E-15 2E-19 147.6 15.1 111 415-526 19-134 (282)
31 TIGR02427 protocat_pcaD 3-oxoa 99.6 4.4E-15 9.6E-20 145.1 11.2 108 418-526 2-112 (251)
32 PRK10349 carboxylesterase BioH 99.6 6.9E-15 1.5E-19 146.8 12.6 103 418-526 4-107 (256)
33 PRK11126 2-succinyl-6-hydroxy- 99.6 1.1E-14 2.3E-19 143.7 13.5 97 427-526 2-100 (242)
34 TIGR01250 pro_imino_pep_2 prol 99.6 2.9E-14 6.3E-19 142.6 16.4 119 410-528 6-131 (288)
35 PF12697 Abhydrolase_6: Alpha/ 99.6 1.7E-14 3.7E-19 138.3 12.7 100 430-530 1-103 (228)
36 PRK08775 homoserine O-acetyltr 99.6 7.9E-15 1.7E-19 153.2 10.5 121 405-527 35-172 (343)
37 TIGR03101 hydr2_PEP hydrolase, 99.5 2.9E-13 6.2E-18 135.5 17.1 104 427-530 25-136 (266)
38 KOG1455 Lysophospholipase [Lip 99.5 1.4E-13 3E-18 135.5 13.6 121 409-529 31-165 (313)
39 PRK05855 short chain dehydroge 99.5 1.3E-13 2.7E-18 153.8 14.7 108 408-516 5-116 (582)
40 PLN02652 hydrolase; alpha/beta 99.5 1.9E-13 4.2E-18 144.9 15.3 117 411-527 116-244 (395)
41 TIGR01392 homoserO_Ac_trn homo 99.5 9.7E-14 2.1E-18 145.5 12.6 118 412-529 12-163 (351)
42 TIGR01249 pro_imino_pep_1 prol 99.5 1.3E-13 2.8E-18 141.7 13.3 114 413-527 12-129 (306)
43 PRK14875 acetoin dehydrogenase 99.5 2E-13 4.3E-18 143.6 15.0 116 410-526 113-230 (371)
44 TIGR03695 menH_SHCHC 2-succiny 99.5 1.6E-13 3.5E-18 133.5 12.5 99 427-526 1-103 (251)
45 KOG4409 Predicted hydrolase/ac 99.5 3E-13 6.6E-18 135.5 13.3 103 426-529 89-196 (365)
46 PRK07581 hypothetical protein; 99.5 1.1E-13 2.3E-18 144.4 10.0 117 412-528 22-159 (339)
47 PLN02894 hydrolase, alpha/beta 99.5 9.5E-13 2.1E-17 140.3 16.8 109 417-526 93-209 (402)
48 PRK00175 metX homoserine O-ace 99.5 4.4E-13 9.4E-18 142.0 13.0 117 413-529 30-183 (379)
49 TIGR01738 bioH putative pimelo 99.4 3.7E-13 7.9E-18 131.1 10.9 94 427-526 4-98 (245)
50 KOG2564 Predicted acetyltransf 99.4 2.9E-12 6.3E-17 124.0 14.8 98 426-523 73-178 (343)
51 TIGR01607 PST-A Plasmodium sub 99.4 9.8E-13 2.1E-17 136.8 12.1 102 413-514 5-162 (332)
52 COG1647 Esterase/lipase [Gener 99.4 1.1E-12 2.3E-17 123.5 10.6 102 427-528 15-119 (243)
53 cd00707 Pancreat_lipase_like P 99.4 5.5E-13 1.2E-17 134.8 8.6 148 415-562 24-220 (275)
54 PRK13604 luxD acyl transferase 99.4 4.7E-12 1E-16 127.9 14.4 116 413-529 17-142 (307)
55 TIGR03230 lipo_lipase lipoprot 99.4 4.7E-12 1E-16 134.2 12.9 141 422-562 36-243 (442)
56 PLN02980 2-oxoglutarate decarb 99.4 5.9E-12 1.3E-16 154.4 15.7 121 405-526 1343-1478(1655)
57 TIGR03100 hydr1_PEP hydrolase, 99.4 2.6E-11 5.7E-16 122.6 17.3 100 427-528 26-134 (274)
58 PLN02511 hydrolase 99.3 1.2E-11 2.6E-16 131.3 14.4 102 426-527 99-210 (388)
59 KOG1454 Predicted hydrolase/ac 99.3 8.5E-12 1.8E-16 128.9 12.1 97 426-522 57-157 (326)
60 PRK05077 frsA fermentation/res 99.3 1.7E-10 3.6E-15 123.4 19.4 115 414-528 177-300 (414)
61 PRK10566 esterase; Provisional 99.3 8.9E-11 1.9E-15 116.5 14.6 107 418-524 15-138 (249)
62 PF12146 Hydrolase_4: Putative 99.2 5.6E-11 1.2E-15 96.4 9.6 75 415-489 1-79 (79)
63 PRK11071 esterase YqiA; Provis 99.2 7.8E-11 1.7E-15 112.6 12.1 89 428-528 2-94 (190)
64 PRK10985 putative hydrolase; P 99.2 2.5E-10 5.4E-15 118.4 16.3 101 427-527 58-168 (324)
65 TIGR03502 lipase_Pla1_cef extr 99.2 1.6E-10 3.5E-15 129.7 13.3 111 404-514 416-575 (792)
66 PF03441 FAD_binding_7: FAD bi 99.1 2.6E-11 5.7E-16 122.5 4.5 59 292-361 1-59 (277)
67 PF12695 Abhydrolase_5: Alpha/ 99.1 5.5E-10 1.2E-14 100.8 10.6 94 429-527 1-94 (145)
68 COG0596 MhpC Predicted hydrola 99.1 1.3E-09 2.8E-14 105.6 13.9 113 414-528 8-123 (282)
69 PLN02872 triacylglycerol lipas 99.1 4.2E-10 9E-15 119.2 9.7 111 406-516 44-182 (395)
70 PF06342 DUF1057: Alpha/beta h 99.0 3.6E-09 7.7E-14 104.0 13.1 108 419-526 24-136 (297)
71 TIGR01836 PHA_synth_III_C poly 99.0 1.5E-09 3.3E-14 113.8 11.1 112 412-526 44-169 (350)
72 PLN00021 chlorophyllase 99.0 2.7E-09 5.9E-14 109.6 11.7 102 426-527 51-165 (313)
73 PRK06765 homoserine O-acetyltr 99.0 2.9E-09 6.4E-14 112.7 12.3 117 414-530 39-198 (389)
74 TIGR00976 /NonD putative hydro 99.0 2.5E-09 5.4E-14 118.8 11.0 113 414-527 5-131 (550)
75 TIGR01838 PHA_synth_I poly(R)- 98.9 6.4E-09 1.4E-13 113.5 11.3 101 427-527 188-301 (532)
76 TIGR01840 esterase_phb esteras 98.9 1.6E-08 3.4E-13 98.3 12.8 103 426-528 12-130 (212)
77 PF00561 Abhydrolase_1: alpha/ 98.9 4.9E-09 1.1E-13 101.5 8.6 73 455-527 1-78 (230)
78 TIGR02821 fghA_ester_D S-formy 98.9 4.8E-08 1E-12 98.9 15.1 115 414-528 23-173 (275)
79 KOG1552 Predicted alpha/beta h 98.8 3.3E-08 7.2E-13 96.0 12.7 102 427-529 60-164 (258)
80 KOG2984 Predicted hydrolase [G 98.8 4.1E-09 8.9E-14 97.7 6.0 118 406-523 21-144 (277)
81 KOG2382 Predicted alpha/beta h 98.8 1.4E-08 2.9E-13 102.1 10.0 97 426-523 51-154 (315)
82 PF00975 Thioesterase: Thioest 98.8 5.4E-08 1.2E-12 95.2 11.8 100 428-529 1-105 (229)
83 PLN02442 S-formylglutathione h 98.8 8.5E-08 1.9E-12 97.5 13.2 115 414-528 28-178 (283)
84 COG0429 Predicted hydrolase of 98.7 1.2E-07 2.6E-12 95.1 12.1 103 427-529 75-187 (345)
85 KOG4391 Predicted alpha/beta h 98.7 3.5E-08 7.5E-13 92.6 7.4 115 409-526 58-182 (300)
86 KOG1838 Alpha/beta hydrolase [ 98.7 6.2E-07 1.4E-11 93.2 16.8 103 426-528 124-236 (409)
87 PRK11460 putative hydrolase; P 98.7 1.6E-07 3.4E-12 92.7 12.0 102 426-527 15-137 (232)
88 KOG2565 Predicted hydrolases o 98.6 1.5E-07 3.3E-12 94.9 10.0 108 413-520 131-256 (469)
89 PRK07868 acyl-CoA synthetase; 98.6 2.1E-07 4.6E-12 110.5 13.0 98 426-526 66-175 (994)
90 PF07819 PGAP1: PGAP1-like pro 98.6 4.5E-07 9.8E-12 88.9 12.1 97 426-525 3-120 (225)
91 PF10230 DUF2305: Uncharacteri 98.5 6.6E-07 1.4E-11 90.1 12.2 99 428-526 3-121 (266)
92 PRK10162 acetyl esterase; Prov 98.5 1.5E-06 3.2E-11 89.9 14.4 85 426-513 80-173 (318)
93 COG2021 MET2 Homoserine acetyl 98.5 5.1E-07 1.1E-11 92.2 10.5 123 413-535 33-189 (368)
94 PF12715 Abhydrolase_7: Abhydr 98.5 1.1E-05 2.3E-10 83.4 19.2 106 427-532 115-264 (390)
95 PF00151 Lipase: Lipase; Inte 98.5 6.1E-08 1.3E-12 100.2 2.6 137 426-562 70-266 (331)
96 KOG4667 Predicted esterase [Li 98.5 1.3E-06 2.7E-11 82.3 10.8 98 426-524 32-135 (269)
97 PF06500 DUF1100: Alpha/beta h 98.5 2.6E-06 5.7E-11 89.2 14.4 170 348-527 117-295 (411)
98 PF01674 Lipase_2: Lipase (cla 98.4 1.6E-07 3.6E-12 91.0 4.2 86 428-514 2-95 (219)
99 COG1506 DAP2 Dipeptidyl aminop 98.4 1.6E-06 3.4E-11 97.8 12.4 120 408-528 368-508 (620)
100 PF02273 Acyl_transf_2: Acyl t 98.4 3.6E-06 7.8E-11 80.9 12.5 137 409-545 5-152 (294)
101 COG3208 GrsT Predicted thioest 98.4 1.7E-06 3.8E-11 83.6 10.3 87 427-514 7-94 (244)
102 PF05728 UPF0227: Uncharacteri 98.4 3E-06 6.6E-11 80.4 11.1 98 430-539 2-103 (187)
103 PF03096 Ndr: Ndr family; Int 98.3 1.2E-05 2.6E-10 80.2 15.1 154 409-563 2-171 (283)
104 PF05448 AXE1: Acetyl xylan es 98.3 3.8E-06 8.2E-11 86.7 12.0 163 370-533 21-215 (320)
105 PF05677 DUF818: Chlamydia CHL 98.3 3.7E-05 8E-10 77.8 18.0 145 407-554 113-292 (365)
106 COG3319 Thioesterase domains o 98.3 4.9E-06 1.1E-10 82.6 11.4 99 428-529 1-104 (257)
107 PF12740 Chlorophyllase2: Chlo 98.3 5.1E-06 1.1E-10 82.1 10.7 102 427-528 17-131 (259)
108 PRK10252 entF enterobactin syn 98.3 5.5E-06 1.2E-10 101.4 12.8 98 426-526 1067-1169(1296)
109 COG0412 Dienelactone hydrolase 98.2 2E-05 4.4E-10 77.8 13.9 100 428-527 28-146 (236)
110 PLN02733 phosphatidylcholine-s 98.2 5.3E-06 1.1E-10 88.9 10.3 88 438-526 105-199 (440)
111 COG3458 Acetyl esterase (deace 98.2 2.2E-06 4.8E-11 83.5 6.5 172 354-530 9-213 (321)
112 PF01738 DLH: Dienelactone hyd 98.2 9E-06 1.9E-10 79.2 10.3 101 426-526 13-130 (218)
113 COG4757 Predicted alpha/beta h 98.1 6.1E-06 1.3E-10 78.7 7.2 109 410-518 10-129 (281)
114 PF02129 Peptidase_S15: X-Pro 98.1 1.7E-05 3.7E-10 80.1 9.5 112 414-526 1-134 (272)
115 PF07224 Chlorophyllase: Chlor 98.0 1.5E-05 3.1E-10 77.6 8.2 101 427-527 46-156 (307)
116 TIGR01839 PHA_synth_II poly(R) 98.0 3.2E-05 7E-10 84.2 11.3 94 427-523 215-323 (560)
117 PF00326 Peptidase_S9: Prolyl 98.0 1.3E-05 2.8E-10 77.7 7.5 87 443-529 3-100 (213)
118 PF05990 DUF900: Alpha/beta hy 98.0 4.9E-05 1.1E-09 75.0 11.5 113 426-538 17-147 (233)
119 PF06821 Ser_hydrolase: Serine 98.0 2.3E-05 5E-10 73.4 8.6 89 430-530 1-93 (171)
120 COG2945 Predicted hydrolase of 98.0 5.5E-05 1.2E-09 70.5 10.6 103 426-528 27-138 (210)
121 PF02230 Abhydrolase_2: Phosph 98.0 3.3E-05 7.2E-10 75.2 9.9 106 425-530 12-142 (216)
122 KOG2931 Differentiation-relate 98.0 0.00024 5.3E-09 70.3 15.0 133 407-540 23-169 (326)
123 PF07859 Abhydrolase_3: alpha/ 97.9 2.3E-05 4.9E-10 75.6 7.4 96 430-528 1-110 (211)
124 PF05057 DUF676: Putative seri 97.9 2.4E-05 5.1E-10 76.4 6.8 86 427-513 4-97 (217)
125 COG1075 LipA Predicted acetylt 97.9 4.1E-05 8.9E-10 79.7 8.5 115 427-543 59-179 (336)
126 PF03403 PAF-AH_p_II: Platelet 97.9 2.4E-05 5.3E-10 82.6 6.5 39 427-465 100-138 (379)
127 COG3571 Predicted hydrolase of 97.8 0.00016 3.5E-09 65.2 10.5 104 427-530 14-127 (213)
128 PRK10115 protease 2; Provision 97.8 0.00027 6E-09 80.5 13.6 121 411-531 422-562 (686)
129 COG0400 Predicted esterase [Ge 97.8 0.0001 2.2E-09 71.0 8.6 105 426-531 17-137 (207)
130 PF10503 Esterase_phd: Esteras 97.7 0.00033 7.1E-09 68.2 11.8 102 427-528 16-132 (220)
131 PF06028 DUF915: Alpha/beta hy 97.7 6.3E-05 1.4E-09 74.9 6.5 102 427-528 11-144 (255)
132 KOG2624 Triglyceride lipase-ch 97.7 9.6E-05 2.1E-09 78.0 7.5 123 406-528 48-200 (403)
133 PRK04940 hypothetical protein; 97.7 0.00031 6.7E-09 65.8 10.0 94 430-537 2-102 (180)
134 COG3509 LpqC Poly(3-hydroxybut 97.7 0.00063 1.4E-08 67.7 12.4 124 405-528 34-179 (312)
135 TIGR01849 PHB_depoly_PhaZ poly 97.6 0.001 2.2E-08 70.4 14.5 100 428-529 103-210 (406)
136 KOG3975 Uncharacterized conser 97.6 0.0008 1.7E-08 65.1 12.4 102 425-526 27-146 (301)
137 COG3046 Uncharacterized protei 97.6 0.0019 4.1E-08 66.5 15.7 260 45-361 2-287 (505)
138 smart00824 PKS_TE Thioesterase 97.6 0.0006 1.3E-08 64.7 11.7 92 432-526 2-100 (212)
139 COG4188 Predicted dienelactone 97.6 0.00017 3.6E-09 74.2 7.9 87 427-513 71-178 (365)
140 KOG4627 Kynurenine formamidase 97.6 0.00011 2.4E-09 68.9 5.9 114 420-536 58-180 (270)
141 PF08538 DUF1749: Protein of u 97.6 0.00048 1E-08 69.5 10.9 118 409-533 14-153 (303)
142 COG0657 Aes Esterase/lipase [L 97.6 0.00043 9.3E-09 71.3 10.6 85 427-514 79-172 (312)
143 KOG1553 Predicted alpha/beta h 97.5 0.00034 7.3E-09 70.4 8.5 119 402-523 211-340 (517)
144 PRK05371 x-prolyl-dipeptidyl a 97.4 0.00082 1.8E-08 77.3 11.5 84 445-529 270-374 (767)
145 PTZ00472 serine carboxypeptida 97.3 0.0013 2.9E-08 71.4 10.9 117 415-531 60-219 (462)
146 COG4814 Uncharacterized protei 97.3 0.0013 2.9E-08 63.9 9.5 100 429-528 47-177 (288)
147 COG4782 Uncharacterized protei 97.3 0.0024 5.3E-08 65.3 11.4 114 426-539 115-245 (377)
148 KOG3847 Phospholipase A2 (plat 97.2 0.00046 9.9E-09 68.8 5.6 41 427-467 118-158 (399)
149 COG3545 Predicted esterase of 97.2 0.0025 5.4E-08 58.8 9.9 91 428-529 3-96 (181)
150 KOG2281 Dipeptidyl aminopeptid 97.2 0.0018 3.8E-08 70.2 9.5 118 427-544 642-778 (867)
151 PF06057 VirJ: Bacterial virul 97.1 0.0015 3.3E-08 61.4 7.3 82 428-514 3-88 (192)
152 KOG3724 Negative regulator of 97.0 0.0023 5E-08 70.9 9.2 85 427-514 89-202 (973)
153 PF12048 DUF3530: Protein of u 96.9 0.037 7.9E-07 57.0 16.5 126 408-533 64-234 (310)
154 COG3150 Predicted esterase [Ge 96.9 0.0047 1E-07 56.4 8.5 95 430-534 2-98 (191)
155 PF09752 DUF2048: Uncharacteri 96.9 0.0057 1.2E-07 62.8 10.2 101 426-526 91-208 (348)
156 PF00756 Esterase: Putative es 96.9 0.0027 5.8E-08 62.9 7.4 101 427-527 24-149 (251)
157 COG4099 Predicted peptidase [G 96.8 0.0078 1.7E-07 59.9 9.7 115 414-529 170-305 (387)
158 PF05577 Peptidase_S28: Serine 96.6 0.016 3.4E-07 62.7 11.6 102 427-529 29-149 (434)
159 KOG1515 Arylacetamide deacetyl 96.6 0.016 3.5E-07 60.0 11.0 85 427-514 90-186 (336)
160 PF06441 EHN: Epoxide hydrolas 96.5 0.011 2.5E-07 51.1 7.9 71 371-447 38-112 (112)
161 COG2936 Predicted acyl esteras 96.5 0.0087 1.9E-07 65.3 8.4 114 414-528 28-159 (563)
162 KOG2100 Dipeptidyl aminopeptid 96.4 0.029 6.2E-07 64.7 12.7 127 405-531 497-647 (755)
163 KOG3043 Predicted hydrolase re 96.4 0.015 3.3E-07 55.8 8.4 106 427-532 39-159 (242)
164 PF03959 FSH1: Serine hydrolas 96.3 0.024 5.2E-07 55.0 9.6 104 426-530 3-147 (212)
165 cd00312 Esterase_lipase Estera 96.3 0.01 2.2E-07 65.1 7.8 87 426-514 94-196 (493)
166 COG3243 PhaC Poly(3-hydroxyalk 96.3 0.0063 1.4E-07 63.6 5.5 94 427-523 107-212 (445)
167 PRK10439 enterobactin/ferric e 96.2 0.029 6.2E-07 60.1 10.4 102 427-528 209-323 (411)
168 KOG2541 Palmitoyl protein thio 96.1 0.04 8.8E-07 54.2 9.7 93 428-523 24-124 (296)
169 PLN02606 palmitoyl-protein thi 96.1 0.053 1.1E-06 54.9 10.9 97 427-526 26-130 (306)
170 PF10340 DUF2424: Protein of u 96.1 0.045 9.7E-07 57.2 10.6 99 427-526 122-233 (374)
171 KOG2112 Lysophospholipase [Lip 96.0 0.028 6E-07 53.5 7.8 102 428-529 4-129 (206)
172 COG2272 PnbA Carboxylesterase 96.0 0.028 6.1E-07 60.1 8.7 101 427-527 94-217 (491)
173 KOG4840 Predicted hydrolases o 95.9 0.027 5.9E-07 53.8 7.4 102 426-530 35-146 (299)
174 PF01764 Lipase_3: Lipase (cla 95.7 0.039 8.5E-07 49.2 7.4 59 479-537 49-115 (140)
175 PF00450 Peptidase_S10: Serine 95.7 0.13 2.8E-06 54.9 12.7 126 406-531 11-184 (415)
176 PF02450 LCAT: Lecithin:choles 95.6 0.025 5.5E-07 60.2 7.0 65 442-514 66-139 (389)
177 PF03583 LIP: Secretory lipase 95.6 0.09 1.9E-06 53.7 10.6 68 445-513 17-90 (290)
178 PLN02633 palmitoyl protein thi 95.5 0.13 2.8E-06 52.2 10.9 97 427-526 25-129 (314)
179 PF00135 COesterase: Carboxyle 95.0 0.051 1.1E-06 60.0 7.3 99 427-526 125-243 (535)
180 KOG2183 Prolylcarboxypeptidase 95.0 0.13 2.9E-06 53.6 9.3 101 423-523 76-197 (492)
181 cd00741 Lipase Lipase. Lipase 94.6 0.095 2.1E-06 47.8 6.6 24 491-514 25-48 (153)
182 PF02089 Palm_thioest: Palmito 94.5 0.066 1.4E-06 53.7 5.8 99 427-526 5-114 (279)
183 KOG2369 Lecithin:cholesterol a 94.5 0.06 1.3E-06 57.2 5.5 72 441-514 124-202 (473)
184 PLN02517 phosphatidylcholine-s 94.2 0.097 2.1E-06 57.4 6.5 70 442-513 157-232 (642)
185 COG3946 VirJ Type IV secretory 93.7 0.24 5.3E-06 51.6 8.0 79 427-511 260-343 (456)
186 cd00519 Lipase_3 Lipase (class 93.7 0.18 3.9E-06 49.3 7.0 28 487-514 121-148 (229)
187 KOG3967 Uncharacterized conser 93.4 0.45 9.8E-06 45.4 8.6 88 427-514 101-210 (297)
188 KOG3101 Esterase D [General fu 93.4 0.036 7.9E-07 52.6 1.4 101 427-527 44-175 (283)
189 PF11144 DUF2920: Protein of u 93.3 0.59 1.3E-05 49.2 10.2 36 494-529 184-220 (403)
190 PLN02454 triacylglycerol lipas 93.0 0.3 6.6E-06 51.7 7.6 60 480-539 212-282 (414)
191 COG0627 Predicted esterase [Ge 92.9 0.26 5.6E-06 50.8 6.9 37 495-531 153-190 (316)
192 PF04244 DPRP: Deoxyribodipyri 92.2 1.5 3.2E-05 42.9 10.9 119 48-176 1-129 (224)
193 COG2819 Predicted hydrolase of 92.2 0.3 6.6E-06 48.5 6.0 53 481-533 121-177 (264)
194 PLN02571 triacylglycerol lipas 92.1 0.19 4E-06 53.3 4.8 37 478-514 208-246 (413)
195 KOG4372 Predicted alpha/beta h 92.1 0.19 4.2E-06 52.5 4.8 86 427-512 80-168 (405)
196 PLN00413 triacylglycerol lipas 91.4 0.29 6.4E-06 52.5 5.3 36 478-513 268-303 (479)
197 PLN02162 triacylglycerol lipas 91.1 0.32 7E-06 52.1 5.2 37 477-513 261-297 (475)
198 PLN02408 phospholipase A1 90.9 0.31 6.8E-06 50.9 4.8 60 479-538 183-251 (365)
199 PF11187 DUF2974: Protein of u 90.8 0.65 1.4E-05 45.5 6.8 48 480-528 71-123 (224)
200 PLN02934 triacylglycerol lipas 90.0 0.43 9.4E-06 51.6 5.1 36 478-513 305-340 (515)
201 KOG2182 Hydrolytic enzymes of 89.8 1.5 3.3E-05 47.1 8.8 102 425-526 84-205 (514)
202 PF11288 DUF3089: Protein of u 89.4 0.69 1.5E-05 44.5 5.5 65 449-514 41-115 (207)
203 PLN02324 triacylglycerol lipas 89.4 0.48 1.1E-05 50.2 4.8 36 479-514 198-235 (415)
204 PF04301 DUF452: Protein of un 89.1 1.5 3.1E-05 42.5 7.5 75 427-523 11-86 (213)
205 PF07082 DUF1350: Protein of u 88.8 3.1 6.7E-05 41.1 9.6 77 429-514 19-110 (250)
206 PLN02802 triacylglycerol lipas 88.6 0.57 1.2E-05 50.7 4.7 36 479-514 313-350 (509)
207 PLN02209 serine carboxypeptida 88.4 5.9 0.00013 42.9 12.4 125 406-530 39-214 (437)
208 PLN03016 sinapoylglucose-malat 88.3 3.3 7.1E-05 44.8 10.4 124 407-530 38-212 (433)
209 PF08840 BAAT_C: BAAT / Acyl-C 88.1 1.2 2.7E-05 43.1 6.4 33 494-526 22-54 (213)
210 PLN02310 triacylglycerol lipas 88.0 0.65 1.4E-05 49.2 4.7 61 478-538 189-259 (405)
211 KOG2551 Phospholipase/carboxyh 87.9 6.7 0.00014 38.0 10.9 103 426-530 4-149 (230)
212 KOG1516 Carboxylesterase and r 87.7 1.2 2.6E-05 49.5 7.0 88 427-514 112-215 (545)
213 PLN02753 triacylglycerol lipas 87.3 0.76 1.6E-05 50.0 4.7 36 478-513 291-331 (531)
214 PF11339 DUF3141: Protein of u 87.3 3.5 7.6E-05 44.7 9.5 76 445-526 92-173 (581)
215 PLN03037 lipase class 3 family 87.0 0.8 1.7E-05 49.7 4.6 36 479-514 299-338 (525)
216 PLN02719 triacylglycerol lipas 86.9 0.8 1.7E-05 49.7 4.6 36 479-514 278-318 (518)
217 PLN02761 lipase class 3 family 86.5 0.9 1.9E-05 49.4 4.7 36 478-513 272-313 (527)
218 COG1770 PtrB Protease II [Amin 86.3 2.2 4.7E-05 47.5 7.6 103 426-528 447-562 (682)
219 PF01083 Cutinase: Cutinase; 85.9 1.4 3E-05 41.5 5.2 60 455-514 40-101 (179)
220 KOG4569 Predicted lipase [Lipi 85.6 1 2.2E-05 47.0 4.5 37 478-514 155-191 (336)
221 COG2939 Carboxypeptidase C (ca 85.4 2.3 5.1E-05 45.9 7.1 88 427-514 101-218 (498)
222 PLN02847 triacylglycerol lipas 84.6 1.4 3E-05 48.6 5.1 26 488-513 245-270 (633)
223 PRK12652 putative monovalent c 82.7 8.9 0.00019 40.3 10.0 101 61-161 20-144 (357)
224 PF04083 Abhydro_lipase: Parti 82.3 2.2 4.7E-05 32.8 4.0 17 427-443 43-59 (63)
225 KOG1282 Serine carboxypeptidas 81.9 10 0.00022 41.1 10.3 126 404-530 42-215 (454)
226 PF05576 Peptidase_S37: PS-10 81.2 2.6 5.6E-05 44.5 5.3 104 418-523 54-164 (448)
227 KOG1202 Animal-type fatty acid 80.9 8.4 0.00018 45.8 9.5 95 424-528 2120-2219(2376)
228 COG4947 Uncharacterized protei 80.8 2.4 5.2E-05 39.3 4.3 114 417-532 16-140 (227)
229 cd01989 STK_N The N-terminal d 79.6 26 0.00056 31.0 10.9 83 58-140 11-112 (146)
230 PF08237 PE-PPE: PE-PPE domain 78.9 3.9 8.6E-05 40.0 5.6 86 454-539 2-101 (225)
231 TIGR00289 conserved hypothetic 78.7 13 0.00027 36.4 8.9 94 60-161 14-112 (222)
232 PRK09982 universal stress prot 78.7 18 0.0004 32.2 9.6 81 60-140 17-112 (142)
233 TIGR03712 acc_sec_asp2 accesso 78.5 7.2 0.00016 42.1 7.7 96 415-514 275-377 (511)
234 PF06259 Abhydrolase_8: Alpha/ 78.5 5.5 0.00012 37.4 6.2 102 427-528 19-145 (177)
235 KOG2237 Predicted serine prote 78.3 1.9 4.2E-05 47.6 3.4 102 427-528 470-584 (712)
236 KOG4540 Putative lipase essent 78.0 3 6.5E-05 41.6 4.3 34 481-514 263-296 (425)
237 COG5153 CVT17 Putative lipase 78.0 3 6.5E-05 41.6 4.3 34 481-514 263-296 (425)
238 PRK15456 universal stress prot 76.4 14 0.0003 32.7 8.1 80 61-140 19-114 (142)
239 PLN02213 sinapoylglucose-malat 72.9 9.9 0.00022 39.3 7.0 75 456-530 3-98 (319)
240 COG1505 Serine proteases of th 71.5 4.6 9.9E-05 44.5 4.1 117 413-529 402-536 (648)
241 cd01994 Alpha_ANH_like_IV This 70.9 24 0.00051 33.7 8.5 90 61-155 14-112 (194)
242 PF05705 DUF829: Eukaryotic pr 70.7 20 0.00044 35.0 8.4 81 429-512 1-85 (240)
243 PRK15005 universal stress prot 70.3 45 0.00098 29.2 9.9 80 61-140 19-116 (144)
244 cd01987 USP_OKCHK USP domain i 69.9 42 0.00092 28.6 9.4 78 59-141 12-95 (124)
245 cd01988 Na_H_Antiporter_C The 69.2 57 0.0012 27.9 10.2 82 60-141 13-104 (132)
246 COG2382 Fes Enterochelin ester 68.3 7.3 0.00016 39.5 4.5 38 494-531 177-215 (299)
247 TIGR00290 MJ0570_dom MJ0570-re 68.2 36 0.00077 33.3 9.2 92 60-161 14-112 (223)
248 KOG3253 Predicted alpha/beta h 67.5 4.3 9.4E-05 44.7 2.9 93 427-526 176-284 (784)
249 cd00293 USP_Like Usp: Universa 67.1 58 0.0013 27.2 9.7 71 70-140 28-102 (130)
250 PRK10116 universal stress prot 64.9 96 0.0021 27.1 12.9 84 58-141 15-112 (142)
251 PF05277 DUF726: Protein of un 61.0 24 0.00052 36.8 6.9 22 492-513 218-239 (345)
252 COG2102 Predicted ATPases of P 59.2 52 0.0011 32.0 8.2 92 60-156 14-111 (223)
253 PF08259 Periviscerokin: Periv 56.1 4.6 9.9E-05 19.7 0.3 7 2-8 4-10 (11)
254 COG4553 DepA Poly-beta-hydroxy 54.7 1.1E+02 0.0024 31.1 9.9 98 427-526 103-207 (415)
255 KOG2029 Uncharacterized conser 54.3 18 0.00039 40.0 4.7 20 493-512 525-544 (697)
256 PF13167 GTP-bdg_N: GTP-bindin 52.8 73 0.0016 26.7 7.2 53 95-148 7-74 (95)
257 PRK15118 universal stress glob 52.5 1.2E+02 0.0026 26.6 9.3 41 100-140 69-112 (144)
258 TIGR01490 HAD-SF-IB-hyp1 HAD-s 50.5 34 0.00074 32.2 5.7 45 94-138 88-132 (202)
259 PF00702 Hydrolase: haloacid d 49.4 34 0.00073 32.2 5.5 61 96-157 130-192 (215)
260 PF00582 Usp: Universal stress 48.4 1E+02 0.0022 26.0 8.0 31 111-141 82-112 (140)
261 PF01902 ATP_bind_4: ATP-bindi 45.5 27 0.00058 34.0 4.1 91 61-161 15-112 (218)
262 COG0560 SerB Phosphoserine pho 45.4 26 0.00056 33.9 3.9 45 95-139 79-123 (212)
263 cd01714 ETF_beta The electron 43.4 93 0.002 29.8 7.4 60 447-514 69-133 (202)
264 TIGR02764 spore_ybaN_pdaB poly 42.7 82 0.0018 29.5 6.9 33 429-461 153-188 (191)
265 PF10087 DUF2325: Uncharacteri 41.6 1.1E+02 0.0024 25.3 6.8 66 98-171 12-82 (97)
266 KOG1283 Serine carboxypeptidas 41.2 92 0.002 32.1 7.1 88 427-514 31-142 (414)
267 COG0589 UspA Universal stress 41.1 1.8E+02 0.0039 25.2 8.7 47 94-140 72-122 (154)
268 KOG1615 Phosphoserine phosphat 40.6 35 0.00076 32.5 3.8 42 97-138 92-135 (227)
269 KOG1551 Uncharacterized conser 40.5 29 0.00064 34.6 3.4 88 427-514 113-215 (371)
270 TIGR01488 HAD-SF-IB Haloacid D 39.9 31 0.00067 31.5 3.5 43 96-138 76-118 (177)
271 KOG4388 Hormone-sensitive lipa 39.4 39 0.00085 37.4 4.4 83 429-514 398-489 (880)
272 PRK12467 peptide synthase; Pro 39.2 1.4E+02 0.003 42.0 10.6 85 427-514 3692-3777(3956)
273 TIGR01491 HAD-SF-IB-PSPlk HAD- 39.0 48 0.001 30.9 4.7 44 95-138 82-125 (201)
274 PF07519 Tannase: Tannase and 38.7 2.9E+02 0.0064 30.2 11.3 82 447-530 53-152 (474)
275 PRK10490 sensor protein KdpD; 38.3 2E+02 0.0043 34.3 10.6 69 70-143 279-348 (895)
276 COG3933 Transcriptional antite 38.1 2.8E+02 0.0061 29.9 10.4 76 428-514 110-185 (470)
277 PRK14010 potassium-transportin 37.4 1.3E+02 0.0028 34.6 8.4 60 96-160 444-503 (673)
278 PF12710 HAD: haloacid dehalog 36.9 68 0.0015 29.6 5.4 41 100-140 96-138 (192)
279 TIGR03679 arCOG00187 arCOG0018 36.5 2.1E+02 0.0046 27.7 8.8 92 61-160 12-112 (218)
280 KOG2872 Uroporphyrinogen decar 36.3 1E+02 0.0022 31.2 6.4 69 427-502 252-336 (359)
281 TIGR01544 HAD-SF-IE haloacid d 35.5 58 0.0013 33.0 4.8 37 96-132 124-160 (277)
282 PF03610 EIIA-man: PTS system 34.6 2.5E+02 0.0053 23.9 8.1 72 429-512 2-75 (116)
283 PRK11175 universal stress prot 34.2 3.1E+02 0.0068 27.4 10.2 42 99-140 226-270 (305)
284 PRK01122 potassium-transportin 34.1 1.4E+02 0.003 34.3 8.1 60 96-160 448-507 (679)
285 KOG2521 Uncharacterized conser 33.5 1.6E+02 0.0034 31.0 7.6 86 427-512 38-127 (350)
286 TIGR00338 serB phosphoserine p 32.5 53 0.0012 31.3 3.9 42 96-137 88-129 (219)
287 COG2217 ZntA Cation transport 32.3 45 0.00098 38.4 3.8 58 98-160 542-599 (713)
288 COG1073 Hydrolases of the alph 31.0 47 0.001 32.6 3.4 88 427-514 49-152 (299)
289 PF04084 ORC2: Origin recognit 30.9 2.7E+02 0.0058 28.9 8.9 104 431-534 57-185 (326)
290 PF09949 DUF2183: Uncharacteri 30.1 3.4E+02 0.0073 22.9 8.7 84 440-523 10-97 (100)
291 TIGR01525 ATPase-IB_hvy heavy 30.1 88 0.0019 35.0 5.7 46 94-139 385-431 (556)
292 smart00827 PKS_AT Acyl transfe 29.6 57 0.0012 32.9 3.7 27 486-512 74-100 (298)
293 TIGR01088 aroQ 3-dehydroquinat 28.6 4.2E+02 0.009 23.9 8.4 73 97-177 25-104 (141)
294 PF00578 AhpC-TSA: AhpC/TSA fa 28.5 1.8E+02 0.0038 24.5 6.2 46 95-140 45-91 (124)
295 PF13911 AhpC-TSA_2: AhpC/TSA 28.4 1.2E+02 0.0026 25.7 5.0 41 98-140 2-45 (115)
296 PLN02954 phosphoserine phospha 27.7 77 0.0017 30.3 4.1 44 94-137 85-130 (224)
297 PF10081 Abhydrolase_9: Alpha/ 27.6 1.6E+02 0.0035 29.8 6.3 64 482-545 94-164 (289)
298 TIGR03131 malonate_mdcH malona 27.5 66 0.0014 32.5 3.8 28 485-512 67-94 (295)
299 PRK11175 universal stress prot 27.3 4.7E+02 0.01 26.1 10.1 87 55-141 12-117 (305)
300 TIGR01512 ATPase-IB2_Cd heavy 27.0 1.1E+02 0.0024 34.1 5.6 47 94-140 363-410 (536)
301 cd00466 DHQase_II Dehydroquina 26.9 4.7E+02 0.01 23.6 8.8 74 96-177 24-104 (140)
302 PF08218 Citrate_ly_lig: Citra 26.8 2.2E+02 0.0048 26.8 6.6 98 64-161 20-138 (182)
303 PF00698 Acyl_transf_1: Acyl t 25.7 44 0.00095 34.3 2.1 28 485-512 75-102 (318)
304 TIGR03333 salvage_mtnX 2-hydro 25.7 1.1E+02 0.0024 29.3 4.8 37 94-130 71-107 (214)
305 PRK13015 3-dehydroquinate dehy 24.9 5.3E+02 0.011 23.4 9.1 73 97-177 27-106 (146)
306 PRK10279 hypothetical protein; 24.9 86 0.0019 32.1 4.0 31 484-514 23-53 (300)
307 COG1073 Hydrolases of the alph 24.8 8 0.00017 38.2 -3.5 86 427-512 88-178 (299)
308 PF06309 Torsin: Torsin; Inte 24.5 1.1E+02 0.0023 27.2 3.9 30 425-454 50-81 (127)
309 cd01427 HAD_like Haloacid deha 24.4 1.2E+02 0.0025 25.5 4.3 40 93-132 24-63 (139)
310 TIGR01497 kdpB K+-transporting 24.1 1.3E+02 0.0027 34.7 5.5 50 96-147 449-498 (675)
311 TIGR01545 YfhB_g-proteo haloac 23.9 1.5E+02 0.0032 28.5 5.3 41 99-139 101-144 (210)
312 PF05822 UMPH-1: Pyrimidine 5' 23.8 79 0.0017 31.4 3.3 37 94-130 91-127 (246)
313 TIGR00128 fabD malonyl CoA-acy 23.7 80 0.0017 31.6 3.5 27 486-512 74-101 (290)
314 COG3673 Uncharacterized conser 23.3 3.7E+02 0.008 27.9 7.9 88 427-514 31-142 (423)
315 PRK10517 magnesium-transportin 23.2 3.4E+02 0.0075 32.4 9.1 38 96-133 553-590 (902)
316 PRK09484 3-deoxy-D-manno-octul 23.2 2.1E+02 0.0046 26.6 6.1 55 96-160 55-109 (183)
317 TIGR02137 HSK-PSP phosphoserin 23.1 80 0.0017 30.2 3.2 44 94-138 69-112 (203)
318 cd07225 Pat_PNPLA6_PNPLA7 Pata 23.0 99 0.0021 31.8 4.0 31 484-514 33-63 (306)
319 cd00006 PTS_IIA_man PTS_IIA, P 23.0 4.9E+02 0.011 22.3 8.3 71 429-510 3-74 (122)
320 PRK05579 bifunctional phosphop 22.7 4.7E+02 0.01 28.0 9.2 73 427-501 116-196 (399)
321 PF06792 UPF0261: Uncharacteri 22.6 9.7E+02 0.021 25.7 11.7 86 428-514 2-115 (403)
322 cd06542 GH18_EndoS-like Endo-b 22.4 7.3E+02 0.016 24.2 10.4 52 91-142 46-115 (255)
323 PRK05282 (alpha)-aspartyl dipe 22.0 2.4E+02 0.0052 27.7 6.3 85 426-511 30-129 (233)
324 cd01017 AdcA Metal binding pro 22.0 5.5E+02 0.012 25.7 9.3 43 96-138 207-250 (282)
325 TIGR00521 coaBC_dfp phosphopan 21.4 5.6E+02 0.012 27.3 9.4 86 428-514 113-224 (390)
326 PRK11590 hypothetical protein; 21.3 1.8E+02 0.0039 27.7 5.3 39 101-139 104-145 (211)
327 cd07227 Pat_Fungal_NTE1 Fungal 21.0 1.2E+02 0.0026 30.6 4.0 31 484-514 28-58 (269)
328 COG0546 Gph Predicted phosphat 20.9 95 0.0021 29.9 3.3 40 95-134 91-130 (220)
329 PF09994 DUF2235: Uncharacteri 20.6 4.8E+02 0.01 26.2 8.5 26 489-514 86-112 (277)
330 COG1752 RssA Predicted esteras 20.6 1.1E+02 0.0024 31.2 3.9 31 484-514 29-59 (306)
331 TIGR02884 spore_pdaA delta-lac 20.5 1.3E+02 0.0028 29.3 4.1 34 428-461 187-221 (224)
332 PRK11133 serB phosphoserine ph 20.4 1.6E+02 0.0035 30.5 5.0 38 100-137 188-225 (322)
333 TIGR01511 ATPase-IB1_Cu copper 20.4 2.7E+02 0.0058 31.2 7.2 41 96-137 408-448 (562)
No 1
>TIGR02765 crypto_DASH cryptochrome, DASH family. Photolyases and cryptochromes are related flavoproteins. Photolyases harness the energy of blue light to repair DNA damage by removing pyrimidine dimers. Cryptochromes do not repair DNA and are presumed to act instead in some other (possibly unknown) process such as entraining circadian rhythms. This model describes the cryptochrome DASH subfamily, one of at least five major subfamilies, which is found in plants, animals, marine bacteria, etc. Members of this family bind both folate and FAD. They may show weak photolyase activity in vitro but have not been shown to affect DNA repair in vivo. Rather, DASH family cryptochromes have been shown to bind RNA (Vibrio cholerae VC1814), or DNA, and seem likely to act in light-responsive regulatory processes.
Probab=100.00 E-value=3.5e-43 Score=376.93 Aligned_cols=252 Identities=31% Similarity=0.532 Sum_probs=199.0
Q ss_pred cEEEEEcCCCCCcCCHHHHHHHhC-CCeEEEEEECCccccc--------CCHhHHHHHHHHHHHHHHHHHhcCCcEEEEE
Q 008512 46 SAVIWFKQDLRVDDHLGLVAASKY-QAVVPLYVFDHRILSR--------YSNEMLELVIFALEDLRKSLKEQGSDLMIRF 116 (563)
Q Consensus 46 ~~l~WfrrDLRl~DN~aL~~A~~~-~~vl~vfi~dp~~~~~--------~~~~r~~Fl~~sL~~L~~~L~~~g~~L~v~~ 116 (563)
.+|||||||||++||+||.+|++. .+|+||||+||.++.. .+.+|++||+|||++|+++|+++|++|+++.
T Consensus 2 ~~l~WfRrDLRl~DN~aL~~A~~~~~~vl~vfi~dp~~~~~~~~~~~~~~~~~r~~Fl~esL~~L~~~L~~~g~~L~v~~ 81 (429)
T TIGR02765 2 VVLYWFRNDLRVHDNPALYKASSSSDTLIPLYCFDPRQFKLTHFFGFPKTGPARGKFLLESLKDLRTSLRKLGSDLLVRS 81 (429)
T ss_pred eEEEEeCCCCccccHHHHHHHHhcCCeEEEEEEECchHhccccccccCCCCHHHHHHHHHHHHHHHHHHHHcCCCeEEEe
Confidence 589999999999999999999987 6899999999987652 5899999999999999999999999999999
Q ss_pred cChHHHHHHHHHHhCccEEEEccccChhHHHHHHHHHHHHHhcCCCCCCceeeeeCcccccCCCC----CCCCcCchhhH
Q 008512 117 GRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDGKPKICLWQTPFYDIKNL----NDLPVSHNEFR 192 (563)
Q Consensus 117 g~~~~~l~~l~~~~~a~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~~~~~~~~~L~~~~~~----~~~p~~f~~f~ 192 (563)
|++.++|++|+++++|++||+|++|+++++++|++|++.|++.+| .++.+++++|++|+++ +.+|++|++|+
T Consensus 82 G~~~~vl~~L~~~~~~~~V~~~~~~~~~~~~rd~~v~~~l~~~~i----~~~~~~~~~l~~p~~v~~~~~~~~~~ft~f~ 157 (429)
T TIGR02765 82 GKPEDVLPELIKELGVRTVFLHQEVGSEEKSVERLLQQALARLGI----HVEQHWGSTLYHEDDLPFDLEDLPDVFTQFR 157 (429)
T ss_pred CCHHHHHHHHHHHhCCCEEEEeccCCHHHHHHHHHHHHHHHhcCc----eEEEecCCEeECHHhcCCCCCCCCCCchHHH
Confidence 999999999999999999999999999999999999999998875 8899999999998875 77888999999
Q ss_pred hccCC---CCCCCCCCC-CCCCCCCCCCCCCCChhhhhhcccCCccchhhhhhhhccchhhHHHHHHhhccccccccCCC
Q 008512 193 KLQRP---LTSPILPPT-LAGAKLEADWGPLPTFDELKEFVNENPWKLEESWTLINNMSAETILTDKLSKLGKRSKRNLN 268 (563)
Q Consensus 193 k~~~~---~~~pl~~p~-l~~~~~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~ 268 (563)
+++.. ...+++.|. ++..+.......+|++++++.
T Consensus 158 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~~~~----------------------------------------- 196 (429)
T TIGR02765 158 KQVEAKCSIRPPLPAPEKLPPLPSVDDPGWIPTLEDLGE----------------------------------------- 196 (429)
T ss_pred HHHHhhCCCCCCCCCcccCCCCcccccccCCCChhhcCC-----------------------------------------
Confidence 98542 223333331 111110000001111111100
Q ss_pred CCCCCcccCCCCccccCCCCcccCChHHHHHHHHHHHHhhcCCccchHHHHHHhhccccCCCCCCCccccCcccccCcCc
Q 008512 269 NQHSPRKRLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRDDWQELQEKLRNAESRDGASFATLFGPALCLGIIS 348 (563)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~gGe~aAl~~L~~fl~~~~~~~l~~Y~~~rn~~r~~~~~p~~~~tS~LSPyL~~G~IS 348 (563)
+... ......|+|||++|+++|++|++ .+.+..|++.||. .++.++||+|||||+||+||
T Consensus 197 -------~~~~----~~~~~~~~gGe~~A~~~L~~Fl~---~~~l~~Y~~~R~~------~~~~~~tS~LSpyL~~G~iS 256 (429)
T TIGR02765 197 -------ESSE----VDRGLPFVGGETAGLARLKEYFW---SKDLKSYKETRNG------MLGPDYSTKFSPWLALGCVS 256 (429)
T ss_pred -------Cccc----ccccCCcCchHHHHHHHHHHHHh---hccHhhhhhccCc------ccCCCCcCccCHHHhCCccc
Confidence 0000 00012489999999999999983 3579999998864 35678999999999999999
Q ss_pred hhHHHHHHHHhhhh
Q 008512 349 RRGVHYEAIKFEKE 362 (563)
Q Consensus 349 ~R~v~~~~~~~~~~ 362 (563)
||+|++++.+++..
T Consensus 257 ~r~v~~~~~~~~~~ 270 (429)
T TIGR02765 257 PRQIYEELQRYETE 270 (429)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999776543
No 2
>COG0415 PhrB Deoxyribodipyrimidine photolyase [DNA replication, recombination, and repair]
Probab=100.00 E-value=8.9e-42 Score=356.29 Aligned_cols=246 Identities=26% Similarity=0.408 Sum_probs=203.8
Q ss_pred CcEEEEEcCCCCCcCCHHHHHHHhC-CC-eEEEEEECCcccccCCHhHHHHHHHHHHHHHHHHHhcCCcEEEEEcChHHH
Q 008512 45 GSAVIWFKQDLRVDDHLGLVAASKY-QA-VVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKEQGSDLMIRFGRVENV 122 (563)
Q Consensus 45 ~~~l~WfrrDLRl~DN~aL~~A~~~-~~-vl~vfi~dp~~~~~~~~~r~~Fl~~sL~~L~~~L~~~g~~L~v~~g~~~~~ 122 (563)
+++|||||||||+.||+||++|++. .+ +++|||++|.++...++++.+||.+||++|+++|+++|++|++..|++.++
T Consensus 2 ~~~l~WfrrDLR~~DN~aL~~A~~~~~~~~~~vfi~~~~~~~~~~~~~~~Fl~~sL~~L~~~L~~~gi~L~v~~~~~~~~ 81 (461)
T COG0415 2 STVLVWFRRDLRLTDNAALAAACQSGQPVIIAVFILDPEQLGHASPRHAAFLLQSLQALQQSLAELGIPLLVREGDPEQV 81 (461)
T ss_pred CeEEEEeccccccCChHHHHHHHhcCCCceEEEEEechhhccccCHHHHHHHHHHHHHHHHHHHHcCCceEEEeCCHHHH
Confidence 5799999999999999999999988 45 569999999998878999999999999999999999999999999999999
Q ss_pred HHHHHHHhCccEEEEccccChhHHHHHHHHHHHHHhcCCCCCCceeeeeCcccccCCCC----CCCCcCchhhHhccCCC
Q 008512 123 IRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDGKPKICLWQTPFYDIKNL----NDLPVSHNEFRKLQRPL 198 (563)
Q Consensus 123 l~~l~~~~~a~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~~~~~~~~~L~~~~~~----~~~p~~f~~f~k~~~~~ 198 (563)
+++++++++++.|++|.+|+..++.+|.+|++.|.+.|| .++.+++..+++|.++ +++|++||+|+|++...
T Consensus 82 l~~~~~~~~~~~v~~n~~~~~~~~~rD~al~~~l~~~gi----~~~~~~d~~l~~p~~~~t~~~~~y~vfT~F~k~~~~~ 157 (461)
T COG0415 82 LPELAKQLAATTVFWNRDYEEWERQRDAALAQPLTEVGI----AVHSFWDALLHEPGEVRTGSGEPYKVFTPFYKAWRDR 157 (461)
T ss_pred HHHHHHHhCcceEEeeeeechhHHHHHHHHHHHHHhcCc----eEEEeccccccCHhhccCCCCCCccccchHHHHHHHh
Confidence 999999999999999999999999999999999999886 8888999999999754 88999999999986543
Q ss_pred ---CCCCCCCC-CCCCCCCCCCCCCCChhhhhhcccCCccchhhhhhhhccchhhHHHHHHhhccccccccCCCCCCCCc
Q 008512 199 ---TSPILPPT-LAGAKLEADWGPLPTFDELKEFVNENPWKLEESWTLINNMSAETILTDKLSKLGKRSKRNLNNQHSPR 274 (563)
Q Consensus 199 ---~~pl~~p~-l~~~~~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ 274 (563)
..|.+.|. +...... ...+.... .|+
T Consensus 158 ~~~~~~~~~p~~~~~~~~~---~~~~~~~~------------------------------------------~P~----- 187 (461)
T COG0415 158 LRILRPVPAPDVLDALRDE---EPPPEEIS------------------------------------------LPD----- 187 (461)
T ss_pred cccCCCCCCcchhcccccc---ccCccccc------------------------------------------CCc-----
Confidence 34454442 1111000 00000000 000
Q ss_pred ccCCCCccccCCCCcccCChHHHHHHHHHHHHhhcCCccchHHHHHHhhccccCCCCCCCccccCcccccCcCchhHHHH
Q 008512 275 KRLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRDDWQELQEKLRNAESRDGASFATLFGPALCLGIISRRGVHY 354 (563)
Q Consensus 275 ~~~~~~~~~~~~~~~~~gGe~aAl~~L~~fl~~~~~~~l~~Y~~~rn~~r~~~~~p~~~~tS~LSPyL~~G~IS~R~v~~ 354 (563)
+.......|.|||++|+++|++|+. +++..|++.|| .|+.++||+|||||+||+||||+||+
T Consensus 188 -------~~~~~~~~~~~Ge~aA~~~l~~F~~----~~l~~Y~~~Rd-------~p~~~~TS~LSpyL~~G~IS~r~v~~ 249 (461)
T COG0415 188 -------FSKFDVLLFTGGEKAALARLQDFLA----EGLDDYERTRD-------FPALDGTSRLSPYLAFGVISPREVYA 249 (461)
T ss_pred -------cccccccCCCchHHHHHHHHHHHHH----HHHHHHHHhcC-------CcccccccccCHHHHcCCcCHHHHHH
Confidence 0000113589999999999999994 67999999987 48999999999999999999999999
Q ss_pred HHHHhhhh
Q 008512 355 EAIKFEKE 362 (563)
Q Consensus 355 ~~~~~~~~ 362 (563)
++.+.+..
T Consensus 250 ~~~~~~~~ 257 (461)
T COG0415 250 ALLAAESD 257 (461)
T ss_pred HHHHhhhc
Confidence 99888764
No 3
>TIGR03556 photolyase_8HDF deoxyribodipyrimidine photo-lyase, 8-HDF type. This model describes a narrow clade of cyanobacterial deoxyribodipyrimidine photo-lyase. This group, in contrast to several closely related proteins, uses a chromophore that, in other lineages is modified further to become coenzyme F420. This chromophore is called 8-HDF in most articles on the DNA photolyase and FO in most literature on coenzyme F420.
Probab=100.00 E-value=2.1e-41 Score=365.36 Aligned_cols=252 Identities=23% Similarity=0.321 Sum_probs=197.3
Q ss_pred cEEEEEcCCCCCcCCHHHHHHHhC-CCeEEEEEECCccccc--CCHhHHHHHHHHHHHHHHHHHhcCCcEEEEEcChHHH
Q 008512 46 SAVIWFKQDLRVDDHLGLVAASKY-QAVVPLYVFDHRILSR--YSNEMLELVIFALEDLRKSLKEQGSDLMIRFGRVENV 122 (563)
Q Consensus 46 ~~l~WfrrDLRl~DN~aL~~A~~~-~~vl~vfi~dp~~~~~--~~~~r~~Fl~~sL~~L~~~L~~~g~~L~v~~g~~~~~ 122 (563)
.+|||||||||++||+||.+|++. .+|+||||+||.++.. .+.+|++||+|||.+|+++|+++|++|+++.|++.++
T Consensus 2 ~vl~WfRrDLRl~DN~AL~~A~~~~~~vl~vfi~dp~~~~~~~~~~~r~~Fl~esL~~L~~~L~~~G~~L~v~~G~p~~v 81 (471)
T TIGR03556 2 LILFWHRRDLRLSDNIGLAAARQQSAKVVGLFCLDPNILQADDMAPARVAYLIGCLQELQQRYQQAGSQLLILQGDPVQL 81 (471)
T ss_pred CEEEEeCCCCCcchHHHHHHHHhcCCCEEEEEEEchhhhccccCCHHHHHHHHHHHHHHHHHHHHCCCCeEEEECCHHHH
Confidence 489999999999999999999987 6899999999987652 4788999999999999999999999999999999999
Q ss_pred HHHHHHHhCccEEEEccccChhHHHHHHHHHHHHHhcCCCCCCceeeeeCcccccCCCC----CCCCcCchhhHhccCCC
Q 008512 123 IRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDGKPKICLWQTPFYDIKNL----NDLPVSHNEFRKLQRPL 198 (563)
Q Consensus 123 l~~l~~~~~a~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~~~~~~~~~L~~~~~~----~~~p~~f~~f~k~~~~~ 198 (563)
|++|+++++|++||+|++|+++++++|++|++.|++.+| .++.+.+++|++|+++ ++.|++|++|+|++...
T Consensus 82 l~~l~~~~~~~~V~~~~~~~~~~~~rd~~v~~~l~~~~i----~~~~~~~~~l~~p~~i~~~~~~~y~~ft~f~k~~~~~ 157 (471)
T TIGR03556 82 IPQLAQQLGAKAVYWNLDVEPYGRKRDRAVAAALKEAGI----AVVTLWDQLLHSPDEILTGSGNPYTVYTPFWKNWSSL 157 (471)
T ss_pred HHHHHHHcCCCEEEEecccCHHHHHHHHHHHHHHHHCCC----EEEEeCCcEEECccccccCCCCCCcchhHHHHHHHhc
Confidence 999999999999999999999999999999999998875 8899999999999875 56899999999986443
Q ss_pred C--CCCCCC-CCCCCCCCCCCCCCCChhhhhhcccCCccchhhhhhhhccchhhHHHHHHhhccccccccCCCCCCCCcc
Q 008512 199 T--SPILPP-TLAGAKLEADWGPLPTFDELKEFVNENPWKLEESWTLINNMSAETILTDKLSKLGKRSKRNLNNQHSPRK 275 (563)
Q Consensus 199 ~--~pl~~p-~l~~~~~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~ 275 (563)
. .|+++| .++..+.. .. .....+.. ..++.....+.
T Consensus 158 ~~~~~~~~p~~~~~~~~~---~~-~~~~~~~~-------------------------------------~~~p~~~~~~~ 196 (471)
T TIGR03556 158 PKPTPVATPTELEGLTEA---EL-EAAAPLGV-------------------------------------IALPTAKDLGF 196 (471)
T ss_pred cccCCCCCccccccCCcc---cc-cccccccc-------------------------------------ccCCccccccc
Confidence 2 234444 12111000 00 00000000 00000000000
Q ss_pred cCCCCccccCCCCcccCChHHHHHHHHHHHHhhcCCccchHHHHHHhhccccCCCCCCCccccCcccccCcCchhHHHHH
Q 008512 276 RLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRDDWQELQEKLRNAESRDGASFATLFGPALCLGIISRRGVHYE 355 (563)
Q Consensus 276 ~~~~~~~~~~~~~~~~gGe~aAl~~L~~fl~~~~~~~l~~Y~~~rn~~r~~~~~p~~~~tS~LSPyL~~G~IS~R~v~~~ 355 (563)
+... ...|+|||++|+++|+.|++ +++.+|++.||. |+.++||+|||||+||+||+|+||++
T Consensus 197 ~~~~-------~~~~~gGe~~A~~~L~~f~~----~~l~~Y~~~r~~-------p~~~~tS~LSpyL~~G~iS~r~v~~~ 258 (471)
T TIGR03556 197 DWDG-------DLILEPGETAAQARLEEFCD----RAIADYQEQRNF-------PALDGTSQLSPALKFGVIGIRTVWQA 258 (471)
T ss_pred cccc-------ccCCCCcHHHHHHHHHHHHH----HHHHHhhhccCC-------CCCCCCCCCChhhcCCcccHHHHHHH
Confidence 0000 01379999999999999994 689999998863 67889999999999999999999999
Q ss_pred HHHhh
Q 008512 356 AIKFE 360 (563)
Q Consensus 356 ~~~~~ 360 (563)
+.+..
T Consensus 259 ~~~~~ 263 (471)
T TIGR03556 259 TQEAH 263 (471)
T ss_pred HHHHH
Confidence 97654
No 4
>TIGR00591 phr2 photolyase PhrII. All proteins in this family for which functions are known are DNA-photolyases used for the direct repair of UV irradiation induced DNA damage. Some repair 6-4 photoproducts while others repair cyclobutane pyrimidine dimers. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=2e-39 Score=350.04 Aligned_cols=248 Identities=15% Similarity=0.147 Sum_probs=187.6
Q ss_pred CcEEEEEcCCCCCcCCHHHHHHHh-----CCCeEEEEEECCcccccCCHhHHHHHHHHHHHHHHHHHhcCCcEEEEEcCh
Q 008512 45 GSAVIWFKQDLRVDDHLGLVAASK-----YQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKEQGSDLMIRFGRV 119 (563)
Q Consensus 45 ~~~l~WfrrDLRl~DN~aL~~A~~-----~~~vl~vfi~dp~~~~~~~~~r~~Fl~~sL~~L~~~L~~~g~~L~v~~g~~ 119 (563)
+++|||||||||++||+||++|++ ..+|+||||+||.++. .+.+|.+||+|||.+|+++|+++|++|+|+.|++
T Consensus 23 ~~vL~WFRrDLRl~DN~aL~~A~~~a~~~~~~vl~vyi~dp~~~~-~~~~r~~Fl~esL~~L~~~L~~~g~~L~v~~g~~ 101 (454)
T TIGR00591 23 GVVVYWMSRDQRVQDNWALIAAQTLALKKKLPLHVCFCLVDFFLA-ATRRHYFFMLGGLDEVANECERLIIPFHLLDGPP 101 (454)
T ss_pred CeEEEEecCchhccCCHHHHHHHHHHHHcCCCEEEEEEeCCCccc-ccHHHHHHHHHHHHHHHHHHHHcCCceEEeecCh
Confidence 579999999999999999999975 2589999999998876 5899999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCccEEEEccccChhHHHHHHHHHHHHHhcCCCCCCceeeeeCcccccCCCC--CCCCcCchhhHhccCC
Q 008512 120 ENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDGKPKICLWQTPFYDIKNL--NDLPVSHNEFRKLQRP 197 (563)
Q Consensus 120 ~~~l~~l~~~~~a~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~~~~~~~~~L~~~~~~--~~~p~~f~~f~k~~~~ 197 (563)
.++|.+|+++++|++||+|++++++++++|++|++.|++ +| .++.+++++|++++.+ ..++++|++|.+....
T Consensus 102 ~~~l~~l~~~~~i~~V~~~~~~~~~~~~rd~~v~~~l~~-~i----~~~~~~~~~l~p~~~~~~~~~y~~ft~~~k~~~~ 176 (454)
T TIGR00591 102 KELLPYFVDLHAAAAVVTDFSPLRQPEQWDEAVGKLLPK-DV----PFQQVDAHNVVPCWAASKKLEYAARTIRGKIRKL 176 (454)
T ss_pred HHHHHHHHHHcCCCEEEEecccCcHHHHHHHHHHHHhcC-CC----cEEEECCceEeeCcccCCceeeeeecHHHHHHHh
Confidence 999999999999999999999999999999999999965 54 8899999999998654 4567778877765211
Q ss_pred CCCCCCC-CCCCCCCCCCCCCCCCChhhhhhcccCCccchhhhhhhhccchhhHHHHHHhhccccccccCCCCCCCCccc
Q 008512 198 LTSPILP-PTLAGAKLEADWGPLPTFDELKEFVNENPWKLEESWTLINNMSAETILTDKLSKLGKRSKRNLNNQHSPRKR 276 (563)
Q Consensus 198 ~~~pl~~-p~l~~~~~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 276 (563)
.+..+.. +.....+.. ....+.. . .|.. ....+ .
T Consensus 177 ~~~~~~~~~~~~~~~~~--~~~~~~~--~-------------~~~~-----~~~~~-------------~---------- 211 (454)
T TIGR00591 177 LPEYLTEFPRVLKHPSP--LDLEAGP--V-------------DWDA-----VRDSL-------------A---------- 211 (454)
T ss_pred ChhhccccCCCccCCcc--cccccCc--C-------------CHHH-----HHHhc-------------c----------
Confidence 1111110 100000000 0000000 0 0000 00000 0
Q ss_pred CCCCccccCCCCcc-cCChHHHHHHHHHHHHhhcCCccchHHHHHHhhccccCCCCCCCccccCcccccCcCchhHHHHH
Q 008512 277 LDKSFFVTDKGNTV-GGGTNAVLNALQAYLRYLEGTVRDDWQELQEKLRNAESRDGASFATLFGPALCLGIISRRGVHYE 355 (563)
Q Consensus 277 ~~~~~~~~~~~~~~-~gGe~aAl~~L~~fl~~~~~~~l~~Y~~~rn~~r~~~~~p~~~~tS~LSPyL~~G~IS~R~v~~~ 355 (563)
..... ....| +|||++|+++|+.|+. +++..|++.||. |+.++||+||||||||+||||+|+++
T Consensus 212 ~~~~~----~~~~~~~gGe~aA~~~L~~F~~----~~l~~Y~~~Rn~-------p~~~~tS~LSPyL~~G~IS~R~i~~~ 276 (454)
T TIGR00591 212 VERSV----EEVVWAKPGTTAGLIMLESFIE----KRLCFFRTRRND-------PNNDALSMLSPWLHFGQLSAQRAARA 276 (454)
T ss_pred CcCCc----CCcCCCCCcHHHHHHHHHHHHH----HHHHHHHHhcCC-------cccccccccchHHhcCcccHHHHHHH
Confidence 00000 01136 9999999999999983 689999999874 77799999999999999999999999
Q ss_pred HHH
Q 008512 356 AIK 358 (563)
Q Consensus 356 ~~~ 358 (563)
+.+
T Consensus 277 ~~~ 279 (454)
T TIGR00591 277 VER 279 (454)
T ss_pred HHH
Confidence 854
No 5
>TIGR02766 crypt_chrom_pln cryptochrome, plant family. At least five major families of cryptochomes and photolyases share FAD cofactor binding, sequence homology, and the ability to react to short wavelengths of visible light. Photolysases are responsible for light-dependent DNA repair by removal of two types of uv-induced DNA dimerizations. Cryptochromes have other functions, often regulatory and often largely unknown, which may include circadian clock entrainment and control of development. Members of this subfamily are known so far only in plants; they may show some photolyase activity in vitro but appear mostly to be regulatory proteins that respond to blue light.
Probab=100.00 E-value=1.7e-39 Score=352.26 Aligned_cols=243 Identities=18% Similarity=0.210 Sum_probs=189.9
Q ss_pred EEEEcCCCCCcCCHHHHHHHhCCCeEEEEEECCccccc--CCHhHHHHHHHHHHHHHHHHHhcCCcEEEEE-cChHHHHH
Q 008512 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSR--YSNEMLELVIFALEDLRKSLKEQGSDLMIRF-GRVENVIR 124 (563)
Q Consensus 48 l~WfrrDLRl~DN~aL~~A~~~~~vl~vfi~dp~~~~~--~~~~r~~Fl~~sL~~L~~~L~~~g~~L~v~~-g~~~~~l~ 124 (563)
|+||||||||+||+||.+|++.++|+||||+||.++.. .+.++.+||++||.+|+++|+++|++|+|+. |++.++|.
T Consensus 1 l~WFRrDLRl~DN~aL~~A~~~~~vlpvyi~dp~~~~~~~~~~~~~~fl~~sL~~L~~~L~~~G~~L~v~~~g~~~~~l~ 80 (475)
T TIGR02766 1 IVWFRRDLRVEDNPALAAAARAGPVIPVFVWAPEEEGQYYPGRVSRWWLKQSLAHLDQSLRSLGTCLVTIRSTDTVAALL 80 (475)
T ss_pred CEecCCCCCcchHHHHHHHHhCCCEEEEEEechHHhccccccHHHHHHHHHHHHHHHHHHHHcCCceEEEeCCCHHHHHH
Confidence 69999999999999999998767899999999987642 3677788999999999999999999999985 89999999
Q ss_pred HHHHHhCccEEEEccccChhHHHHHHHHHHHHHhcCCCCCCceeeeeCcccccCCCC----CCCCcCchhhHhccCCCCC
Q 008512 125 ELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDGKPKICLWQTPFYDIKNL----NDLPVSHNEFRKLQRPLTS 200 (563)
Q Consensus 125 ~l~~~~~a~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~~~~~~~~~L~~~~~~----~~~p~~f~~f~k~~~~~~~ 200 (563)
+|+++++|+.||+|++++++++++|++|++.|++.|| .++.+.+++|++|+++ +++|++|++|+|++.....
T Consensus 81 ~l~~~~~i~~v~~~~~~~~~~~~rd~~v~~~l~~~gi----~~~~~~~~~l~~p~~i~~~~~~~~~~ft~f~~~~~~~~~ 156 (475)
T TIGR02766 81 DCVRSTGATRLFFNHLYDPVSLVRDHRAKEVLTAQGI----SVQSFNADLLYEPWEVYDELGRPFTMFAAFWERCLSMPY 156 (475)
T ss_pred HHHHHcCCCEEEEecccCHHHHHHHHHHHHHHHHcCC----EEEEecCCEEEChhhhcccCCCCCCeecHHHHHHHhccC
Confidence 9999999999999999999999999999999998875 8999999999999865 5789999999998643221
Q ss_pred -C---CCCCC-CCCCCCCCCCCCCCChhhhhhcccCCccchhhhhhhhccchhhHHHHHHhhccccccccCCCCCCCCcc
Q 008512 201 -P---ILPPT-LAGAKLEADWGPLPTFDELKEFVNENPWKLEESWTLINNMSAETILTDKLSKLGKRSKRNLNNQHSPRK 275 (563)
Q Consensus 201 -p---l~~p~-l~~~~~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~ 275 (563)
+ ++.|. ++. + ....+..+++++.. ...
T Consensus 157 ~~~~~~~~p~~~~~-~----~~~~~~~~~~~~~~----------------------------------------~~~--- 188 (475)
T TIGR02766 157 DPESPLLPPKKIIS-G----DVSKCSADDLGFED----------------------------------------DSE--- 188 (475)
T ss_pred CCCCCCCCccccCC-C----ccccCChhhcCCCC----------------------------------------ccc---
Confidence 1 22221 100 0 00000111111000 000
Q ss_pred cCCCCccccCCCCcccCChHHHHHHHHHHHHhhcCCccchHHHHHHhhccccCCCCCCCccccCcccccCcCchhHHHHH
Q 008512 276 RLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRDDWQELQEKLRNAESRDGASFATLFGPALCLGIISRRGVHYE 355 (563)
Q Consensus 276 ~~~~~~~~~~~~~~~~gGe~aAl~~L~~fl~~~~~~~l~~Y~~~rn~~r~~~~~p~~~~tS~LSPyL~~G~IS~R~v~~~ 355 (563)
...+.. ....|+|||++|+++|+.|++ +++..|++.|| .|+.++||+|||||+|||||||+||++
T Consensus 189 ~~~~~~----~~~~~~gGe~~A~~~L~~Fl~----~~~~~Y~~~Rd-------~p~~~~tS~LSPyL~~G~ISpR~v~~~ 253 (475)
T TIGR02766 189 KGSNAL----LARAWSPGWSNADKALTEFIN----GPLLEYSKNRK-------KADSATTSLLSPYLHFGEVSVRKVFHL 253 (475)
T ss_pred cccccc----ccccCCCccHHHHHHHHHHHH----HHHHHHhhcCC-------CCCCCCCCCCCcccccCcccHHHHHHH
Confidence 000000 002489999999999999984 67899999876 367799999999999999999999999
Q ss_pred HH
Q 008512 356 AI 357 (563)
Q Consensus 356 ~~ 357 (563)
+.
T Consensus 254 ~~ 255 (475)
T TIGR02766 254 VR 255 (475)
T ss_pred HH
Confidence 85
No 6
>PRK10674 deoxyribodipyrimidine photolyase; Provisional
Probab=100.00 E-value=4.5e-39 Score=347.42 Aligned_cols=241 Identities=15% Similarity=0.209 Sum_probs=188.8
Q ss_pred EEEEEcCCCCCcCCHHHHHHHhC-C-CeEEEEEECCcccc--cCCHhHHHHHHHHHHHHHHHHHhcCCcEEEEEc----C
Q 008512 47 AVIWFKQDLRVDDHLGLVAASKY-Q-AVVPLYVFDHRILS--RYSNEMLELVIFALEDLRKSLKEQGSDLMIRFG----R 118 (563)
Q Consensus 47 ~l~WfrrDLRl~DN~aL~~A~~~-~-~vl~vfi~dp~~~~--~~~~~r~~Fl~~sL~~L~~~L~~~g~~L~v~~g----~ 118 (563)
+|||||||||++||+||.+|++. + +|+||||+||..+. ..+.+|++||+|||.+|+++|+++|++|+|+.| +
T Consensus 4 ~l~WfRrDLRl~DN~aL~~A~~~~~~~vlpvyv~dp~~~~~~~~~~~r~~Fl~esL~~L~~~L~~~g~~L~v~~g~~~g~ 83 (472)
T PRK10674 4 HLVWFRNDLRLHDNLALAAACRDPSARVLALFIATPAQWAAHDMAPRQAAFINAQLNALQIALAEKGIPLLFHEVDDFAA 83 (472)
T ss_pred eEEEECCCCCcchHHHHHHHHhCCCCCEEEEEEECchhhccCCCCHHHHHHHHHHHHHHHHHHHHcCCceEEEecCCcCC
Confidence 69999999999999999999987 3 79999999997654 258999999999999999999999999999975 7
Q ss_pred hHHHHHHHHHHhCccEEEEccccChhHHHHHHHHHHHHHhcCCCCCCceeeeeCcccccCCCC----CCCCcCchhhHhc
Q 008512 119 VENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDGKPKICLWQTPFYDIKNL----NDLPVSHNEFRKL 194 (563)
Q Consensus 119 ~~~~l~~l~~~~~a~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~~~~~~~~~L~~~~~~----~~~p~~f~~f~k~ 194 (563)
+.++|++|+++++|+.||++++++++++++|++|++.|. + +.++.+++++|++++.+ +++|++|++|+++
T Consensus 84 ~~~vl~~l~~~~~i~~v~~~~~~~~~~~~rd~~v~~~l~--~----i~~~~~~~~~l~~~~~i~~~~~~~y~~ft~f~~~ 157 (472)
T PRK10674 84 SVEWLKQFCQQHQVTHLFYNYQYEVNERQRDAAVERALR--N----VVCQGFDDSVLLPPGSVMTGNHEMYKVFTPFKNA 157 (472)
T ss_pred HHHHHHHHHHHcCCCEEEEecccCHHHHHHHHHHHHHcC--C----CEEEEecCceEeCccccccCCCCCCCcccHHHHH
Confidence 999999999999999999999999999999999999986 3 37788999999999864 6789999999998
Q ss_pred cCC-CCCCCCCCCCCCCCCCCCCCCC--CChhhhhhcccCCccchhhhhhhhccchhhHHHHHHhhccccccccCCCCCC
Q 008512 195 QRP-LTSPILPPTLAGAKLEADWGPL--PTFDELKEFVNENPWKLEESWTLINNMSAETILTDKLSKLGKRSKRNLNNQH 271 (563)
Q Consensus 195 ~~~-~~~pl~~p~l~~~~~~~~~~~~--p~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~ 271 (563)
+.. +..+.+.+ ++. +........ +....++ +
T Consensus 158 ~~~~~~~~~p~~-~~~-p~~~~~~~~~~~~~~~~~-------------~------------------------------- 191 (472)
T PRK10674 158 FLKRLREGDPEC-VPA-PKVRSSGAIEPLPPIPFN-------------Y------------------------------- 191 (472)
T ss_pred HHHhhcccCCcc-CCC-CccccccccCCCCccccc-------------C-------------------------------
Confidence 643 22222111 110 000000000 0000000 0
Q ss_pred CCcccCCCCccccCCCCcccCChHHHHHHHHHHHHhhcCCccchHHHHHHhhccccCCCCCCCccccCcccccCcCchhH
Q 008512 272 SPRKRLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRDDWQELQEKLRNAESRDGASFATLFGPALCLGIISRRG 351 (563)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~gGe~aAl~~L~~fl~~~~~~~l~~Y~~~rn~~r~~~~~p~~~~tS~LSPyL~~G~IS~R~ 351 (563)
.... . ....|+|||++|+++|++|++ +++..|++.||. |+.++||+|||||+||+||+|+
T Consensus 192 ----~~~~--~---~~~~~~gGe~~A~~~L~~f~~----~~l~~Y~~~r~~-------p~~~~tS~LSPyL~~G~iS~r~ 251 (472)
T PRK10674 192 ----PQQS--F---DTALFPVGEKAAIAQLRQFCQ----QGAGEYEQQRDF-------PAVDGTSRLSAYLATGVLSPRQ 251 (472)
T ss_pred ----cccc--c---ccCCCCCCHHHHHHHHHHHHH----HHHHHhccccCC-------CCccCCCCcChhhccCcCCHHH
Confidence 0000 0 012489999999999999984 579999998863 6778999999999999999999
Q ss_pred HHHHHHHh
Q 008512 352 VHYEAIKF 359 (563)
Q Consensus 352 v~~~~~~~ 359 (563)
||+++++.
T Consensus 252 v~~~~~~~ 259 (472)
T PRK10674 252 CLHRLLAE 259 (472)
T ss_pred HHHHHHHH
Confidence 99999763
No 7
>PF00875 DNA_photolyase: DNA photolyase from Prosite.; InterPro: IPR006050 DNA photolyases are enzymes that bind to DNA containing pyrimidine dimers: on absorption of visible light, they catalyse dimer splitting into the constituent monomers, a process called photoreactivation []. This is a DNA repair mechanism, repairing mismatched pyrimidine dimers induced by exposure to ultra-violet light []. The precise mechanisms involved in substrate binding, conversion of light energy to the mechanical energy needed to rupture the cyclobutane ring, and subsequent release of the product are uncertain []. Analysis of DNA lyases has revealed the presence of an intrinsic chromophore, all monomers containing a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore [, ]. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm []. This domain binds a light harvesting cofactor.; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 2J07_A 1IQU_A 2J09_A 2J08_A 1IQR_A 1DNP_A 3FY4_B 2VTB_A 2J4D_B ....
Probab=99.98 E-value=2.2e-32 Score=255.50 Aligned_cols=155 Identities=26% Similarity=0.399 Sum_probs=127.5
Q ss_pred EEEEEcCCCCCcCCHHHHHHHhC-CCeEEEEEECCccccc--CCHhHHHHHHHHHHHHHHHHHhcCCcEEEEEcChHHHH
Q 008512 47 AVIWFKQDLRVDDHLGLVAASKY-QAVVPLYVFDHRILSR--YSNEMLELVIFALEDLRKSLKEQGSDLMIRFGRVENVI 123 (563)
Q Consensus 47 ~l~WfrrDLRl~DN~aL~~A~~~-~~vl~vfi~dp~~~~~--~~~~r~~Fl~~sL~~L~~~L~~~g~~L~v~~g~~~~~l 123 (563)
+|||||||||++||+||++|++. .+|++|||+||..... .+.+|.+||+|||.+|+++|+++|++|+++.|++.++|
T Consensus 1 ~l~Wfr~DLRl~DN~aL~~A~~~~~~v~~vfv~d~~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~g~~L~v~~g~~~~~l 80 (165)
T PF00875_consen 1 VLVWFRRDLRLHDNPALHAAAQNGDPVLPVFVFDPEEFHPYRIGPRRRRFLLESLADLQESLRKLGIPLLVLRGDPEEVL 80 (165)
T ss_dssp EEEEESS--SSTT-HHHHHHHHTTSEEEEEEEE-HHGGTTCSSCHHHHHHHHHHHHHHHHHHHHTTS-EEEEESSHHHHH
T ss_pred CEEEEcCCCchhhhHHHHHHHHcCCCeEEEEEecccccccccCcchHHHHHHHHHHHHHHHHHhcCcceEEEecchHHHH
Confidence 69999999999999999999988 8999999999985443 49999999999999999999999999999999999999
Q ss_pred HHHHHHhCccEEEEccccChhHHHHHHHHHHHHHhcCCCCCCceeeeeCcccccCCCC----CCCCcCchhhHhccCCC-
Q 008512 124 RELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDGKPKICLWQTPFYDIKNL----NDLPVSHNEFRKLQRPL- 198 (563)
Q Consensus 124 ~~l~~~~~a~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~~~~~~~~~L~~~~~~----~~~p~~f~~f~k~~~~~- 198 (563)
.+|+++++|++||+|++|+++++++|++|++.|++.|| .++.+++++|++++++ +++|++||+|+|++.+.
T Consensus 81 ~~l~~~~~~~~V~~~~~~~~~~~~rd~~v~~~l~~~~i----~~~~~~~~~L~~~~~i~~~~~~~~~vFtpf~k~~~~~~ 156 (165)
T PF00875_consen 81 PELAKEYGATAVYFNEEYTPYERRRDERVRKALKKHGI----KVHTFDDHTLVPPDDIPKKDGEPYKVFTPFRKKWEKQL 156 (165)
T ss_dssp HHHHHHHTESEEEEE---SHHHHHHHHHHHHHHHHTTS----EEEEE--SSSS-HHHCHSTTSSSHSSHHHHHHHHHCHC
T ss_pred HHHHHhcCcCeeEeccccCHHHHHHHHHHHHHHHhcce----EEEEECCcEEEeccccccCCCCCcccHHHHHHHHHhcC
Confidence 99999999999999999999999999999999998775 9999999999999865 88999999999986552
Q ss_pred C-CCCCCC
Q 008512 199 T-SPILPP 205 (563)
Q Consensus 199 ~-~pl~~p 205 (563)
. .|+|+|
T Consensus 157 ~~~p~p~p 164 (165)
T PF00875_consen 157 LEEPLPAP 164 (165)
T ss_dssp SC------
T ss_pred CCCCCCCC
Confidence 2 566654
No 8
>KOG0133 consensus Deoxyribodipyrimidine photolyase/cryptochrome [Replication, recombination and repair; Signal transduction mechanisms]
Probab=99.94 E-value=3e-26 Score=241.91 Aligned_cols=150 Identities=23% Similarity=0.354 Sum_probs=135.4
Q ss_pred CcEEEEEcCCCCCcCCHHHHHHHhC-CCeEEEEEECCccccc--CCHhHHHHHHHHHHHHHHHHHhcCCcEEEEEcChHH
Q 008512 45 GSAVIWFKQDLRVDDHLGLVAASKY-QAVVPLYVFDHRILSR--YSNEMLELVIFALEDLRKSLKEQGSDLMIRFGRVEN 121 (563)
Q Consensus 45 ~~~l~WfrrDLRl~DN~aL~~A~~~-~~vl~vfi~dp~~~~~--~~~~r~~Fl~~sL~~L~~~L~~~g~~L~v~~g~~~~ 121 (563)
.++|+|||+|||++|||||.+|+.. +++.||||+||+..+. .|..+.+||.|+|++|+++|+++|++|.+++|.|..
T Consensus 5 ~~~v~wfr~~lR~~dnpal~~a~~~~~~~~~v~i~d~~~~~~~~~g~~~~~~l~qsL~~ld~sl~~l~~~L~v~~~~p~~ 84 (531)
T KOG0133|consen 5 SKSVHWFRKGLRLHDNPALLAAAAGKEPVRPVFILDPEEAGSSNVGRNRWRFLLQSLEDLDQSLRELNSRLFVFRGHPIA 84 (531)
T ss_pred cceEEecccCcccccChhhHHHhccCCCceeEEEeCHhHhhccccchhHHHHHHHHHHHHHHHHHHhCCceEEEeCCchH
Confidence 5799999999999999999777766 8999999999988763 488899999999999999999999999999999999
Q ss_pred HHHHHHHHhCccEEEEccccChhHHHHHHHHHHHHHhcCCCCCCceeeeeCcccccCCC-----CCCCCcCchhhHhccC
Q 008512 122 VIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDGKPKICLWQTPFYDIKN-----LNDLPVSHNEFRKLQR 196 (563)
Q Consensus 122 ~l~~l~~~~~a~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~~~~~~~~~L~~~~~-----~~~~p~~f~~f~k~~~ 196 (563)
+|..+.++.++..|.++..+.+..+.+|..++..+.+.++ .+.+...++++.++. .+.+|..|..|+....
T Consensus 85 vl~~~~~~~~~~~l~~~~~~~p~~~vrD~~~~~~a~~l~i----~v~s~~s~~~~~~~~~i~~n~~k~pls~~~~~~~~~ 160 (531)
T KOG0133|consen 85 VLSRLLEQVGVQKLKFEYDMEPDGKVRDATIKSLATELGL----SVVSPVSHTLYLPDKIIEANGGKPPLSYKTFRGVCQ 160 (531)
T ss_pred HHhhhhhccceeEEEEEEeccCccccccHHHHHHHHHhhh----hhcccCchhhhcHHHHHHhcCCCCcccccccccccc
Confidence 9999999999999999999999999999999999998886 788888888998874 3788889999998654
Q ss_pred CC
Q 008512 197 PL 198 (563)
Q Consensus 197 ~~ 198 (563)
.+
T Consensus 161 ~~ 162 (531)
T KOG0133|consen 161 SM 162 (531)
T ss_pred cc
Confidence 44
No 9
>PLN02824 hydrolase, alpha/beta fold family protein
Probab=99.77 E-value=5.7e-18 Score=172.71 Aligned_cols=122 Identities=44% Similarity=0.796 Sum_probs=109.1
Q ss_pred CeeEEEEEECCeEEEEEEeCCCCCeEEEECCCCCChHHHHHHHHHHhhCCCEEEEEcCCCCCCCCCCC-------cCCCH
Q 008512 405 VYSTRIWRWNGYQIQYTVAGKEGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPN-------IVYTE 477 (563)
Q Consensus 405 ~~~~~~~~~~g~~l~y~~~g~~~~~vlllHG~~~~~~~~~~~~~~l~~~g~~Vi~~D~~G~G~S~~~~-------~~~~~ 477 (563)
..+.++++++|.+++|...|+++++|||+||++++...|..+++.|+.. |+|+++|+||||.|+.+. ..+++
T Consensus 7 ~~~~~~~~~~~~~i~y~~~G~~~~~vlllHG~~~~~~~w~~~~~~L~~~-~~vi~~DlpG~G~S~~~~~~~~~~~~~~~~ 85 (294)
T PLN02824 7 QVETRTWRWKGYNIRYQRAGTSGPALVLVHGFGGNADHWRKNTPVLAKS-HRVYAIDLLGYGYSDKPNPRSAPPNSFYTF 85 (294)
T ss_pred CCCCceEEEcCeEEEEEEcCCCCCeEEEECCCCCChhHHHHHHHHHHhC-CeEEEEcCCCCCCCCCCccccccccccCCH
Confidence 3456789999999999998866789999999999999999999999885 899999999999998653 35899
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEEechhHHHHHHHHhc-cCcccEEEEEcCc
Q 008512 478 LMWSELLRDFTVEVVGEPVHLIGNSIGGMFLSTNLTR-GKLYAFLLSVNYL 527 (563)
Q Consensus 478 ~~~~~~l~~~l~~l~~~~i~lvGhS~Gg~ia~~~a~~-~~~~~~v~~~~~~ 527 (563)
+++++++.+++++++.++++|+||||||.+++.+|.+ |+.++.++++++.
T Consensus 86 ~~~a~~l~~~l~~l~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lili~~~ 136 (294)
T PLN02824 86 ETWGEQLNDFCSDVVGDPAFVICNSVGGVVGLQAAVDAPELVRGVMLINIS 136 (294)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEeCHHHHHHHHHHHhChhheeEEEEECCC
Confidence 9999999999999999999999999999999999987 8888888887653
No 10
>PRK00870 haloalkane dehalogenase; Provisional
Probab=99.75 E-value=2.3e-17 Score=168.98 Aligned_cols=123 Identities=28% Similarity=0.406 Sum_probs=109.0
Q ss_pred CCeeEEEEEECC-----eEEEEEEeCC-CCCeEEEECCCCCChHHHHHHHHHHhhCCCEEEEEcCCCCCCCCCCC--cCC
Q 008512 404 GVYSTRIWRWNG-----YQIQYTVAGK-EGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPN--IVY 475 (563)
Q Consensus 404 ~~~~~~~~~~~g-----~~l~y~~~g~-~~~~vlllHG~~~~~~~~~~~~~~l~~~g~~Vi~~D~~G~G~S~~~~--~~~ 475 (563)
-++..+++++++ .+++|...|+ .+++|||+||++++...|..+++.|.+.||+|+++|+||||.|+.+. ..+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~i~y~~~G~~~~~~lvliHG~~~~~~~w~~~~~~L~~~gy~vi~~Dl~G~G~S~~~~~~~~~ 96 (302)
T PRK00870 17 YPFAPHYVDVDDGDGGPLRMHYVDEGPADGPPVLLLHGEPSWSYLYRKMIPILAAAGHRVIAPDLIGFGRSDKPTRREDY 96 (302)
T ss_pred CCCCceeEeecCCCCceEEEEEEecCCCCCCEEEEECCCCCchhhHHHHHHHHHhCCCEEEEECCCCCCCCCCCCCcccC
Confidence 356778899988 8999999875 37899999999999999999999998779999999999999997653 358
Q ss_pred CHHHHHHHHHHHHHHhCCCcEEEEEechhHHHHHHHHhc-cCcccEEEEEcC
Q 008512 476 TELMWSELLRDFTVEVVGEPVHLIGNSIGGMFLSTNLTR-GKLYAFLLSVNY 526 (563)
Q Consensus 476 ~~~~~~~~l~~~l~~l~~~~i~lvGhS~Gg~ia~~~a~~-~~~~~~v~~~~~ 526 (563)
+++++++++.+++++++.++++++||||||.+++.++.. |+.++.++++++
T Consensus 97 ~~~~~a~~l~~~l~~l~~~~v~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~ 148 (302)
T PRK00870 97 TYARHVEWMRSWFEQLDLTDVTLVCQDWGGLIGLRLAAEHPDRFARLVVANT 148 (302)
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEEEEChHHHHHHHHHHhChhheeEEEEeCC
Confidence 999999999999999999999999999999999999987 777888777764
No 11
>PRK03592 haloalkane dehalogenase; Provisional
Probab=99.75 E-value=2.6e-17 Score=167.89 Aligned_cols=122 Identities=25% Similarity=0.250 Sum_probs=110.4
Q ss_pred CCCeeEEEEEECCeEEEEEEeCCCCCeEEEECCCCCChHHHHHHHHHHhhCCCEEEEEcCCCCCCCCCCCcCCCHHHHHH
Q 008512 403 EGVYSTRIWRWNGYQIQYTVAGKEGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNIVYTELMWSE 482 (563)
Q Consensus 403 ~~~~~~~~~~~~g~~l~y~~~g~~~~~vlllHG~~~~~~~~~~~~~~l~~~g~~Vi~~D~~G~G~S~~~~~~~~~~~~~~ 482 (563)
+.+++.++++++|.+++|...| ++++|||+||++++...|..+++.|++. |+|+++|+||||.|+.+...++.+++++
T Consensus 4 ~~~~~~~~~~~~g~~i~y~~~G-~g~~vvllHG~~~~~~~w~~~~~~L~~~-~~via~D~~G~G~S~~~~~~~~~~~~a~ 81 (295)
T PRK03592 4 EPPGEMRRVEVLGSRMAYIETG-EGDPIVFLHGNPTSSYLWRNIIPHLAGL-GRCLAPDLIGMGASDKPDIDYTFADHAR 81 (295)
T ss_pred cCCCcceEEEECCEEEEEEEeC-CCCEEEEECCCCCCHHHHHHHHHHHhhC-CEEEEEcCCCCCCCCCCCCCCCHHHHHH
Confidence 3455677888999999999988 5789999999999999999999999986 5999999999999987766789999999
Q ss_pred HHHHHHHHhCCCcEEEEEechhHHHHHHHHhc-cCcccEEEEEcC
Q 008512 483 LLRDFTVEVVGEPVHLIGNSIGGMFLSTNLTR-GKLYAFLLSVNY 526 (563)
Q Consensus 483 ~l~~~l~~l~~~~i~lvGhS~Gg~ia~~~a~~-~~~~~~v~~~~~ 526 (563)
++.+++++++.++++++||||||.+++.++.+ |+.++.++++++
T Consensus 82 dl~~ll~~l~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lil~~~ 126 (295)
T PRK03592 82 YLDAWFDALGLDDVVLVGHDWGSALGFDWAARHPDRVRGIAFMEA 126 (295)
T ss_pred HHHHHHHHhCCCCeEEEEECHHHHHHHHHHHhChhheeEEEEECC
Confidence 99999999999999999999999999999987 888888888775
No 12
>TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase. This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid.
Probab=99.75 E-value=1.6e-17 Score=167.95 Aligned_cols=122 Identities=22% Similarity=0.175 Sum_probs=106.3
Q ss_pred eeEEEEEECCeEEEEEEeC-C-CCCeEEEECCCCCChHHHHHHHHHHhhCCCEEEEEcCCCCCCCCCCCcCCCHHHHHHH
Q 008512 406 YSTRIWRWNGYQIQYTVAG-K-EGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNIVYTELMWSEL 483 (563)
Q Consensus 406 ~~~~~~~~~g~~l~y~~~g-~-~~~~vlllHG~~~~~~~~~~~~~~l~~~g~~Vi~~D~~G~G~S~~~~~~~~~~~~~~~ 483 (563)
+..++.+++|.+++|...+ . ++++|||+||++++...|..+++.|.+ +|+|+++|+||||.|+.+...+++++++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~plvllHG~~~~~~~w~~~~~~L~~-~~~vi~~Dl~G~G~S~~~~~~~~~~~~~~~ 80 (276)
T TIGR02240 2 FIFRTIDLDGQSIRTAVRPGKEGLTPLLIFNGIGANLELVFPFIEALDP-DLEVIAFDVPGVGGSSTPRHPYRFPGLAKL 80 (276)
T ss_pred eeEEEeccCCcEEEEEEecCCCCCCcEEEEeCCCcchHHHHHHHHHhcc-CceEEEECCCCCCCCCCCCCcCcHHHHHHH
Confidence 3456778899999998753 3 357999999999999999999999987 699999999999999876667899999999
Q ss_pred HHHHHHHhCCCcEEEEEechhHHHHHHHHhc-cCcccEEEEEcCcC
Q 008512 484 LRDFTVEVVGEPVHLIGNSIGGMFLSTNLTR-GKLYAFLLSVNYLL 528 (563)
Q Consensus 484 l~~~l~~l~~~~i~lvGhS~Gg~ia~~~a~~-~~~~~~v~~~~~~~ 528 (563)
+.+++++++.++++|+||||||.+++.+|.+ |+.++.++++++..
T Consensus 81 ~~~~i~~l~~~~~~LvG~S~GG~va~~~a~~~p~~v~~lvl~~~~~ 126 (276)
T TIGR02240 81 AARMLDYLDYGQVNAIGVSWGGALAQQFAHDYPERCKKLILAATAA 126 (276)
T ss_pred HHHHHHHhCcCceEEEEECHHHHHHHHHHHHCHHHhhheEEeccCC
Confidence 9999999999999999999999999999987 77788877776543
No 13
>KOG4178 consensus Soluble epoxide hydrolase [Lipid transport and metabolism]
Probab=99.71 E-value=1.1e-16 Score=159.52 Aligned_cols=127 Identities=24% Similarity=0.311 Sum_probs=116.6
Q ss_pred CCCeeEEEEEECCeEEEEEEeCCC-CCeEEEECCCCCChHHHHHHHHHHhhCCCEEEEEcCCCCCCCCCCC--cCCCHHH
Q 008512 403 EGVYSTRIWRWNGYQIQYTVAGKE-GPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPN--IVYTELM 479 (563)
Q Consensus 403 ~~~~~~~~~~~~g~~l~y~~~g~~-~~~vlllHG~~~~~~~~~~~~~~l~~~g~~Vi~~D~~G~G~S~~~~--~~~~~~~ 479 (563)
...++..+++.+|++++|...|++ +|.|+++||++..+.+|+..+..|+..||+|+++|+||+|.|+.+. ..|++..
T Consensus 19 ~~~~~hk~~~~~gI~~h~~e~g~~~gP~illlHGfPe~wyswr~q~~~la~~~~rviA~DlrGyG~Sd~P~~~~~Yt~~~ 98 (322)
T KOG4178|consen 19 LSAISHKFVTYKGIRLHYVEGGPGDGPIVLLLHGFPESWYSWRHQIPGLASRGYRVIAPDLRGYGFSDAPPHISEYTIDE 98 (322)
T ss_pred hhhcceeeEEEccEEEEEEeecCCCCCEEEEEccCCccchhhhhhhhhhhhcceEEEecCCCCCCCCCCCCCcceeeHHH
Confidence 456888999999999999988865 8899999999999999999999999999999999999999999875 5789999
Q ss_pred HHHHHHHHHHHhCCCcEEEEEechhHHHHHHHHhc-cCcccEEEEEcCcCC
Q 008512 480 WSELLRDFTVEVVGEPVHLIGNSIGGMFLSTNLTR-GKLYAFLLSVNYLLS 529 (563)
Q Consensus 480 ~~~~l~~~l~~l~~~~i~lvGhS~Gg~ia~~~a~~-~~~~~~v~~~~~~~~ 529 (563)
++.|+..+++.++.++++++||+||+++|..++.. |+++.+++..+....
T Consensus 99 l~~di~~lld~Lg~~k~~lvgHDwGaivaw~la~~~Perv~~lv~~nv~~~ 149 (322)
T KOG4178|consen 99 LVGDIVALLDHLGLKKAFLVGHDWGAIVAWRLALFYPERVDGLVTLNVPFP 149 (322)
T ss_pred HHHHHHHHHHHhccceeEEEeccchhHHHHHHHHhChhhcceEEEecCCCC
Confidence 99999999999999999999999999999999886 999988888776554
No 14
>PLN02679 hydrolase, alpha/beta fold family protein
Probab=99.69 E-value=4e-16 Score=164.08 Aligned_cols=117 Identities=45% Similarity=0.788 Sum_probs=102.4
Q ss_pred EEEEECCe-EEEEEEeCCC-----CCeEEEECCCCCChHHHHHHHHHHhhCCCEEEEEcCCCCCCCCCCC-cCCCHHHHH
Q 008512 409 RIWRWNGY-QIQYTVAGKE-----GPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPN-IVYTELMWS 481 (563)
Q Consensus 409 ~~~~~~g~-~l~y~~~g~~-----~~~vlllHG~~~~~~~~~~~~~~l~~~g~~Vi~~D~~G~G~S~~~~-~~~~~~~~~ 481 (563)
+++.++|. +++|...|++ +++|||+||++++...|..+++.|.+ +|+|+++|+||||.|+.+. ..+++++++
T Consensus 64 ~~~~~~g~~~i~Y~~~G~g~~~~~gp~lvllHG~~~~~~~w~~~~~~L~~-~~~via~Dl~G~G~S~~~~~~~~~~~~~a 142 (360)
T PLN02679 64 KKWKWKGEYSINYLVKGSPEVTSSGPPVLLVHGFGASIPHWRRNIGVLAK-NYTVYAIDLLGFGASDKPPGFSYTMETWA 142 (360)
T ss_pred ceEEECCceeEEEEEecCcccCCCCCeEEEECCCCCCHHHHHHHHHHHhc-CCEEEEECCCCCCCCCCCCCccccHHHHH
Confidence 45666777 9999988853 48999999999999999999999987 7999999999999998754 468999999
Q ss_pred HHHHHHHHHhCCCcEEEEEechhHHHHHHHHh-c-cCcccEEEEEcC
Q 008512 482 ELLRDFTVEVVGEPVHLIGNSIGGMFLSTNLT-R-GKLYAFLLSVNY 526 (563)
Q Consensus 482 ~~l~~~l~~l~~~~i~lvGhS~Gg~ia~~~a~-~-~~~~~~v~~~~~ 526 (563)
+++.+++++++.++++|+||||||.+++.++. . |+.++.++++++
T Consensus 143 ~~l~~~l~~l~~~~~~lvGhS~Gg~ia~~~a~~~~P~rV~~LVLi~~ 189 (360)
T PLN02679 143 ELILDFLEEVVQKPTVLIGNSVGSLACVIAASESTRDLVRGLVLLNC 189 (360)
T ss_pred HHHHHHHHHhcCCCeEEEEECHHHHHHHHHHHhcChhhcCEEEEECC
Confidence 99999999999999999999999999988875 3 788888887765
No 15
>PRK03204 haloalkane dehalogenase; Provisional
Probab=99.69 E-value=4.9e-16 Score=158.17 Aligned_cols=120 Identities=26% Similarity=0.330 Sum_probs=105.8
Q ss_pred CeeEEEEEECCeEEEEEEeCCCCCeEEEECCCCCChHHHHHHHHHHhhCCCEEEEEcCCCCCCCCCCC-cCCCHHHHHHH
Q 008512 405 VYSTRIWRWNGYQIQYTVAGKEGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPN-IVYTELMWSEL 483 (563)
Q Consensus 405 ~~~~~~~~~~g~~l~y~~~g~~~~~vlllHG~~~~~~~~~~~~~~l~~~g~~Vi~~D~~G~G~S~~~~-~~~~~~~~~~~ 483 (563)
.++.++++++|.+++|...| .+++|||+||++.+...|..+++.|.+ +|+|+++|+||||.|+.+. ..++.++++++
T Consensus 13 ~~~~~~~~~~~~~i~y~~~G-~~~~iv~lHG~~~~~~~~~~~~~~l~~-~~~vi~~D~~G~G~S~~~~~~~~~~~~~~~~ 90 (286)
T PRK03204 13 PFESRWFDSSRGRIHYIDEG-TGPPILLCHGNPTWSFLYRDIIVALRD-RFRCVAPDYLGFGLSERPSGFGYQIDEHARV 90 (286)
T ss_pred cccceEEEcCCcEEEEEECC-CCCEEEEECCCCccHHHHHHHHHHHhC-CcEEEEECCCCCCCCCCCCccccCHHHHHHH
Confidence 35667889999999999888 468999999999999999999999987 6999999999999998654 35789999999
Q ss_pred HHHHHHHhCCCcEEEEEechhHHHHHHHHhc-cCcccEEEEEcC
Q 008512 484 LRDFTVEVVGEPVHLIGNSIGGMFLSTNLTR-GKLYAFLLSVNY 526 (563)
Q Consensus 484 l~~~l~~l~~~~i~lvGhS~Gg~ia~~~a~~-~~~~~~v~~~~~ 526 (563)
+.+++++++.++++++||||||.+++.++.. ++.++.++++++
T Consensus 91 ~~~~~~~~~~~~~~lvG~S~Gg~va~~~a~~~p~~v~~lvl~~~ 134 (286)
T PRK03204 91 IGEFVDHLGLDRYLSMGQDWGGPISMAVAVERADRVRGVVLGNT 134 (286)
T ss_pred HHHHHHHhCCCCEEEEEECccHHHHHHHHHhChhheeEEEEECc
Confidence 9999999999999999999999999999876 777777777654
No 16
>TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein. Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity.
Probab=99.69 E-value=5.2e-16 Score=155.74 Aligned_cols=118 Identities=25% Similarity=0.256 Sum_probs=103.9
Q ss_pred EEEEEECCeEEEEEEeCCC-CCeEEEECCCCCChHHHHHHHHHHhhCCCEEEEEcCCCCCCCCCCCc-CCCHHHHHHHHH
Q 008512 408 TRIWRWNGYQIQYTVAGKE-GPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNI-VYTELMWSELLR 485 (563)
Q Consensus 408 ~~~~~~~g~~l~y~~~g~~-~~~vlllHG~~~~~~~~~~~~~~l~~~g~~Vi~~D~~G~G~S~~~~~-~~~~~~~~~~l~ 485 (563)
.++++.+|.+++|...|++ +++|||+||++++...|..+++.|++ +|+|+++|+||||.|+.+.. .++++++++++.
T Consensus 8 ~~~~~~~~~~~~~~~~g~~~~~~vv~~hG~~~~~~~~~~~~~~l~~-~~~vi~~D~~G~G~S~~~~~~~~~~~~~~~~l~ 86 (278)
T TIGR03056 8 SRRVTVGPFHWHVQDMGPTAGPLLLLLHGTGASTHSWRDLMPPLAR-SFRVVAPDLPGHGFTRAPFRFRFTLPSMAEDLS 86 (278)
T ss_pred cceeeECCEEEEEEecCCCCCCeEEEEcCCCCCHHHHHHHHHHHhh-CcEEEeecCCCCCCCCCccccCCCHHHHHHHHH
Confidence 4567889999999998864 78999999999999999999999987 69999999999999987654 689999999999
Q ss_pred HHHHHhCCCcEEEEEechhHHHHHHHHhc-cCcccEEEEEcC
Q 008512 486 DFTVEVVGEPVHLIGNSIGGMFLSTNLTR-GKLYAFLLSVNY 526 (563)
Q Consensus 486 ~~l~~l~~~~i~lvGhS~Gg~ia~~~a~~-~~~~~~v~~~~~ 526 (563)
+++++++.++++|+||||||.+++.++.. +..++.++++.+
T Consensus 87 ~~i~~~~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~~v~~~~ 128 (278)
T TIGR03056 87 ALCAAEGLSPDGVIGHSAGAAIALRLALDGPVTPRMVVGINA 128 (278)
T ss_pred HHHHHcCCCCceEEEECccHHHHHHHHHhCCcccceEEEEcC
Confidence 99999998999999999999999999887 766666666544
No 17
>PRK10749 lysophospholipase L2; Provisional
Probab=99.69 E-value=5.4e-16 Score=161.16 Aligned_cols=121 Identities=17% Similarity=0.149 Sum_probs=102.7
Q ss_pred eEEEEEECCeEEEEEEeCC--CCCeEEEECCCCCChHHHHHHHHHHhhCCCEEEEEcCCCCCCCCCCCc------CCCHH
Q 008512 407 STRIWRWNGYQIQYTVAGK--EGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNI------VYTEL 478 (563)
Q Consensus 407 ~~~~~~~~g~~l~y~~~g~--~~~~vlllHG~~~~~~~~~~~~~~l~~~g~~Vi~~D~~G~G~S~~~~~------~~~~~ 478 (563)
+.+++..+|.+++|..+++ ++++||++||++++...|..++..+++.||+|+++|+||||.|+++.. ..+++
T Consensus 32 ~~~~~~~~g~~l~~~~~~~~~~~~~vll~HG~~~~~~~y~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~ 111 (330)
T PRK10749 32 EAEFTGVDDIPIRFVRFRAPHHDRVVVICPGRIESYVKYAELAYDLFHLGYDVLIIDHRGQGRSGRLLDDPHRGHVERFN 111 (330)
T ss_pred ceEEEcCCCCEEEEEEccCCCCCcEEEEECCccchHHHHHHHHHHHHHCCCeEEEEcCCCCCCCCCCCCCCCcCccccHH
Confidence 4566778999999999874 367899999999999999999999988899999999999999975421 24789
Q ss_pred HHHHHHHHHHHHh----CCCcEEEEEechhHHHHHHHHhc-cCcccEEEEEcCc
Q 008512 479 MWSELLRDFTVEV----VGEPVHLIGNSIGGMFLSTNLTR-GKLYAFLLSVNYL 527 (563)
Q Consensus 479 ~~~~~l~~~l~~l----~~~~i~lvGhS~Gg~ia~~~a~~-~~~~~~v~~~~~~ 527 (563)
++++|+..+++.+ +..+++++||||||.+++.++.. ++.++.++++++.
T Consensus 112 ~~~~d~~~~~~~~~~~~~~~~~~l~GhSmGG~ia~~~a~~~p~~v~~lvl~~p~ 165 (330)
T PRK10749 112 DYVDDLAAFWQQEIQPGPYRKRYALAHSMGGAILTLFLQRHPGVFDAIALCAPM 165 (330)
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEEEcHHHHHHHHHHHhCCCCcceEEEECch
Confidence 9999999999876 56899999999999999998876 7777777777664
No 18
>PLN02578 hydrolase
Probab=99.67 E-value=8.4e-16 Score=161.26 Aligned_cols=117 Identities=42% Similarity=0.744 Sum_probs=105.5
Q ss_pred EEEEEECCeEEEEEEeCCCCCeEEEECCCCCChHHHHHHHHHHhhCCCEEEEEcCCCCCCCCCCCcCCCHHHHHHHHHHH
Q 008512 408 TRIWRWNGYQIQYTVAGKEGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNIVYTELMWSELLRDF 487 (563)
Q Consensus 408 ~~~~~~~g~~l~y~~~g~~~~~vlllHG~~~~~~~~~~~~~~l~~~g~~Vi~~D~~G~G~S~~~~~~~~~~~~~~~l~~~ 487 (563)
..++..+|.+++|...| ++++|||+||++++...|..+++.|++ +|+|+++|+||||.|+.+...++.+.+++++.++
T Consensus 68 ~~~~~~~~~~i~Y~~~g-~g~~vvliHG~~~~~~~w~~~~~~l~~-~~~v~~~D~~G~G~S~~~~~~~~~~~~a~~l~~~ 145 (354)
T PLN02578 68 YNFWTWRGHKIHYVVQG-EGLPIVLIHGFGASAFHWRYNIPELAK-KYKVYALDLLGFGWSDKALIEYDAMVWRDQVADF 145 (354)
T ss_pred ceEEEECCEEEEEEEcC-CCCeEEEECCCCCCHHHHHHHHHHHhc-CCEEEEECCCCCCCCCCcccccCHHHHHHHHHHH
Confidence 36778899999999877 568899999999999999999999987 6999999999999999887778999999999999
Q ss_pred HHHhCCCcEEEEEechhHHHHHHHHhc-cCcccEEEEEcC
Q 008512 488 TVEVVGEPVHLIGNSIGGMFLSTNLTR-GKLYAFLLSVNY 526 (563)
Q Consensus 488 l~~l~~~~i~lvGhS~Gg~ia~~~a~~-~~~~~~v~~~~~ 526 (563)
++++..++++++||||||.+++.+|.+ |+.++.++++++
T Consensus 146 i~~~~~~~~~lvG~S~Gg~ia~~~A~~~p~~v~~lvLv~~ 185 (354)
T PLN02578 146 VKEVVKEPAVLVGNSLGGFTALSTAVGYPELVAGVALLNS 185 (354)
T ss_pred HHHhccCCeEEEEECHHHHHHHHHHHhChHhcceEEEECC
Confidence 999999999999999999999999987 888888877654
No 19
>PLN02385 hydrolase; alpha/beta fold family protein
Probab=99.64 E-value=2.1e-15 Score=157.90 Aligned_cols=118 Identities=21% Similarity=0.225 Sum_probs=97.4
Q ss_pred EEEECCeEEEEEEeCCC----CCeEEEECCCCCChHH-HHHHHHHHhhCCCEEEEEcCCCCCCCCCCCc-CCCHHHHHHH
Q 008512 410 IWRWNGYQIQYTVAGKE----GPAILLVHGFGAFLEH-YRDNIYDIADGGNRVWAITLLGFGRSEKPNI-VYTELMWSEL 483 (563)
Q Consensus 410 ~~~~~g~~l~y~~~g~~----~~~vlllHG~~~~~~~-~~~~~~~l~~~g~~Vi~~D~~G~G~S~~~~~-~~~~~~~~~~ 483 (563)
+...+|.+++|..+++. +++|||+||++++... |..++..|++.||+|+++|+||||.|++... ..+++++++|
T Consensus 66 ~~~~~g~~l~~~~~~p~~~~~~~~iv~lHG~~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~~d 145 (349)
T PLN02385 66 EVNSRGVEIFSKSWLPENSRPKAAVCFCHGYGDTCTFFFEGIARKIASSGYGVFAMDYPGFGLSEGLHGYIPSFDDLVDD 145 (349)
T ss_pred EEcCCCCEEEEEEEecCCCCCCeEEEEECCCCCccchHHHHHHHHHHhCCCEEEEecCCCCCCCCCCCCCcCCHHHHHHH
Confidence 44568999999988752 4689999999988664 5788999998899999999999999987542 3588999999
Q ss_pred HHHHHHHhCC------CcEEEEEechhHHHHHHHHhc-cCcccEEEEEcCc
Q 008512 484 LRDFTVEVVG------EPVHLIGNSIGGMFLSTNLTR-GKLYAFLLSVNYL 527 (563)
Q Consensus 484 l~~~l~~l~~------~~i~lvGhS~Gg~ia~~~a~~-~~~~~~v~~~~~~ 527 (563)
+.++++.+.. .+++|+||||||++++.++.+ |+.+..++++++.
T Consensus 146 v~~~l~~l~~~~~~~~~~~~LvGhSmGG~val~~a~~~p~~v~glVLi~p~ 196 (349)
T PLN02385 146 VIEHYSKIKGNPEFRGLPSFLFGQSMGGAVALKVHLKQPNAWDGAILVAPM 196 (349)
T ss_pred HHHHHHHHHhccccCCCCEEEEEeccchHHHHHHHHhCcchhhheeEeccc
Confidence 9999887753 379999999999999999876 7777777776654
No 20
>PLN02965 Probable pheophorbidase
Probab=99.64 E-value=1.3e-15 Score=152.07 Aligned_cols=99 Identities=19% Similarity=0.191 Sum_probs=88.7
Q ss_pred eEEEECCCCCChHHHHHHHHHHhhCCCEEEEEcCCCCCCCCCCC-cCCCHHHHHHHHHHHHHHhCC-CcEEEEEechhHH
Q 008512 429 AILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPN-IVYTELMWSELLRDFTVEVVG-EPVHLIGNSIGGM 506 (563)
Q Consensus 429 ~vlllHG~~~~~~~~~~~~~~l~~~g~~Vi~~D~~G~G~S~~~~-~~~~~~~~~~~l~~~l~~l~~-~~i~lvGhS~Gg~ 506 (563)
+|||+||++.+...|..+++.|.+.||+|+++|+||||.|+.+. ..++++++++++.++++.++. ++++++||||||.
T Consensus 5 ~vvllHG~~~~~~~w~~~~~~L~~~~~~via~Dl~G~G~S~~~~~~~~~~~~~a~dl~~~l~~l~~~~~~~lvGhSmGG~ 84 (255)
T PLN02965 5 HFVFVHGASHGAWCWYKLATLLDAAGFKSTCVDLTGAGISLTDSNTVSSSDQYNRPLFALLSDLPPDHKVILVGHSIGGG 84 (255)
T ss_pred EEEEECCCCCCcCcHHHHHHHHhhCCceEEEecCCcCCCCCCCccccCCHHHHHHHHHHHHHhcCCCCCEEEEecCcchH
Confidence 59999999999999999999997779999999999999997654 367899999999999999987 5999999999999
Q ss_pred HHHHHHhc-cCcccEEEEEcCc
Q 008512 507 FLSTNLTR-GKLYAFLLSVNYL 527 (563)
Q Consensus 507 ia~~~a~~-~~~~~~v~~~~~~ 527 (563)
+++.++.+ |+.++.++++++.
T Consensus 85 ia~~~a~~~p~~v~~lvl~~~~ 106 (255)
T PLN02965 85 SVTEALCKFTDKISMAIYVAAA 106 (255)
T ss_pred HHHHHHHhCchheeEEEEEccc
Confidence 99999987 8888888876654
No 21
>PLN02211 methyl indole-3-acetate methyltransferase
Probab=99.63 E-value=2e-15 Score=152.61 Aligned_cols=115 Identities=23% Similarity=0.269 Sum_probs=98.5
Q ss_pred ECCeEEEEEEeCCCCCeEEEECCCCCChHHHHHHHHHHhhCCCEEEEEcCCCCCCCCCCC-cCCCHHHHHHHHHHHHHHh
Q 008512 413 WNGYQIQYTVAGKEGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPN-IVYTELMWSELLRDFTVEV 491 (563)
Q Consensus 413 ~~g~~l~y~~~g~~~~~vlllHG~~~~~~~~~~~~~~l~~~g~~Vi~~D~~G~G~S~~~~-~~~~~~~~~~~l~~~l~~l 491 (563)
-+|.+++|...+.++|+|||+||++++...|..++..|.+.||+|+++|+||||.|.... ..++++++++++.++++++
T Consensus 4 ~~~~~~~~~~~~~~~p~vvliHG~~~~~~~w~~~~~~L~~~g~~vi~~dl~g~G~s~~~~~~~~~~~~~~~~l~~~i~~l 83 (273)
T PLN02211 4 ENGEEVTDMKPNRQPPHFVLIHGISGGSWCWYKIRCLMENSGYKVTCIDLKSAGIDQSDADSVTTFDEYNKPLIDFLSSL 83 (273)
T ss_pred ccccccccccccCCCCeEEEECCCCCCcCcHHHHHHHHHhCCCEEEEecccCCCCCCCCcccCCCHHHHHHHHHHHHHhc
Confidence 367788888765568899999999999999999999998889999999999999885443 3479999999999999998
Q ss_pred C-CCcEEEEEechhHHHHHHHHhc-cCcccEEEEEcCc
Q 008512 492 V-GEPVHLIGNSIGGMFLSTNLTR-GKLYAFLLSVNYL 527 (563)
Q Consensus 492 ~-~~~i~lvGhS~Gg~ia~~~a~~-~~~~~~v~~~~~~ 527 (563)
. .++++|+||||||+++..++.. ++.++.++++.+.
T Consensus 84 ~~~~~v~lvGhS~GG~v~~~~a~~~p~~v~~lv~~~~~ 121 (273)
T PLN02211 84 PENEKVILVGHSAGGLSVTQAIHRFPKKICLAVYVAAT 121 (273)
T ss_pred CCCCCEEEEEECchHHHHHHHHHhChhheeEEEEeccc
Confidence 5 5899999999999999999876 7777777776554
No 22
>PLN03084 alpha/beta hydrolase fold protein; Provisional
Probab=99.63 E-value=4.3e-15 Score=156.60 Aligned_cols=117 Identities=22% Similarity=0.254 Sum_probs=104.0
Q ss_pred EEECCeEEEEEEeCCC-CCeEEEECCCCCChHHHHHHHHHHhhCCCEEEEEcCCCCCCCCCCCc----CCCHHHHHHHHH
Q 008512 411 WRWNGYQIQYTVAGKE-GPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNI----VYTELMWSELLR 485 (563)
Q Consensus 411 ~~~~g~~l~y~~~g~~-~~~vlllHG~~~~~~~~~~~~~~l~~~g~~Vi~~D~~G~G~S~~~~~----~~~~~~~~~~l~ 485 (563)
...+|.+++|...|+. +++|||+||++++...|..+++.|++ +|+|+++|+||||.|+.+.. .++++++++++.
T Consensus 110 ~~~~~~~~~y~~~G~~~~~~ivllHG~~~~~~~w~~~~~~L~~-~~~Via~DlpG~G~S~~p~~~~~~~ys~~~~a~~l~ 188 (383)
T PLN03084 110 ASSDLFRWFCVESGSNNNPPVLLIHGFPSQAYSYRKVLPVLSK-NYHAIAFDWLGFGFSDKPQPGYGFNYTLDEYVSSLE 188 (383)
T ss_pred EcCCceEEEEEecCCCCCCeEEEECCCCCCHHHHHHHHHHHhc-CCEEEEECCCCCCCCCCCcccccccCCHHHHHHHHH
Confidence 3468899999998854 78999999999999999999999987 79999999999999987642 579999999999
Q ss_pred HHHHHhCCCcEEEEEechhHHHHHHHHhc-cCcccEEEEEcCcC
Q 008512 486 DFTVEVVGEPVHLIGNSIGGMFLSTNLTR-GKLYAFLLSVNYLL 528 (563)
Q Consensus 486 ~~l~~l~~~~i~lvGhS~Gg~ia~~~a~~-~~~~~~v~~~~~~~ 528 (563)
+++++++.++++|+||||||.+++.++.. |+.++.++++++..
T Consensus 189 ~~i~~l~~~~~~LvG~s~GG~ia~~~a~~~P~~v~~lILi~~~~ 232 (383)
T PLN03084 189 SLIDELKSDKVSLVVQGYFSPPVVKYASAHPDKIKKLILLNPPL 232 (383)
T ss_pred HHHHHhCCCCceEEEECHHHHHHHHHHHhChHhhcEEEEECCCC
Confidence 99999999999999999999999999887 88888887777653
No 23
>PHA02857 monoglyceride lipase; Provisional
Probab=99.62 E-value=5e-15 Score=149.45 Aligned_cols=120 Identities=18% Similarity=0.287 Sum_probs=95.0
Q ss_pred EEEEECCeEEEEEEeCCC---CCeEEEECCCCCChHHHHHHHHHHhhCCCEEEEEcCCCCCCCCCCCc-CCCHHHHHHHH
Q 008512 409 RIWRWNGYQIQYTVAGKE---GPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNI-VYTELMWSELL 484 (563)
Q Consensus 409 ~~~~~~g~~l~y~~~g~~---~~~vlllHG~~~~~~~~~~~~~~l~~~g~~Vi~~D~~G~G~S~~~~~-~~~~~~~~~~l 484 (563)
.++..+|.+|.|..+.+. ++.||++||++++...|..+++.|++.||+|+++|+||||.|++... ..++.++.+|+
T Consensus 4 ~~~~~~g~~l~~~~~~~~~~~~~~v~llHG~~~~~~~~~~~~~~l~~~g~~via~D~~G~G~S~~~~~~~~~~~~~~~d~ 83 (276)
T PHA02857 4 CMFNLDNDYIYCKYWKPITYPKALVFISHGAGEHSGRYEELAENISSLGILVFSHDHIGHGRSNGEKMMIDDFGVYVRDV 83 (276)
T ss_pred eeecCCCCEEEEEeccCCCCCCEEEEEeCCCccccchHHHHHHHHHhCCCEEEEccCCCCCCCCCccCCcCCHHHHHHHH
Confidence 355669999999877653 44577779999999999999999999899999999999999976432 23566667777
Q ss_pred HHHHHHh----CCCcEEEEEechhHHHHHHHHhc-cCcccEEEEEcCcC
Q 008512 485 RDFTVEV----VGEPVHLIGNSIGGMFLSTNLTR-GKLYAFLLSVNYLL 528 (563)
Q Consensus 485 ~~~l~~l----~~~~i~lvGhS~Gg~ia~~~a~~-~~~~~~v~~~~~~~ 528 (563)
.+.++.+ ...+++|+||||||++++.++.. ++.++.+++.++..
T Consensus 84 ~~~l~~~~~~~~~~~~~lvG~S~GG~ia~~~a~~~p~~i~~lil~~p~~ 132 (276)
T PHA02857 84 VQHVVTIKSTYPGVPVFLLGHSMGATISILAAYKNPNLFTAMILMSPLV 132 (276)
T ss_pred HHHHHHHHhhCCCCCEEEEEcCchHHHHHHHHHhCccccceEEEecccc
Confidence 7766554 34689999999999999999876 77777777766643
No 24
>TIGR03611 RutD pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.
Probab=99.62 E-value=3.2e-15 Score=147.32 Aligned_cols=108 Identities=19% Similarity=0.244 Sum_probs=92.8
Q ss_pred EEEEeCC---CCCeEEEECCCCCChHHHHHHHHHHhhCCCEEEEEcCCCCCCCCCCC-cCCCHHHHHHHHHHHHHHhCCC
Q 008512 419 QYTVAGK---EGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPN-IVYTELMWSELLRDFTVEVVGE 494 (563)
Q Consensus 419 ~y~~~g~---~~~~vlllHG~~~~~~~~~~~~~~l~~~g~~Vi~~D~~G~G~S~~~~-~~~~~~~~~~~l~~~l~~l~~~ 494 (563)
+|...|+ ++|+|||+||++++...|..+++.|.+ +|+|+++|+||||.|..+. ..++++++++++.++++.++.+
T Consensus 2 ~~~~~~~~~~~~~~iv~lhG~~~~~~~~~~~~~~l~~-~~~vi~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~i~~~~~~ 80 (257)
T TIGR03611 2 HYELHGPPDADAPVVVLSSGLGGSGSYWAPQLDVLTQ-RFHVVTYDHRGTGRSPGELPPGYSIAHMADDVLQLLDALNIE 80 (257)
T ss_pred EEEEecCCCCCCCEEEEEcCCCcchhHHHHHHHHHHh-ccEEEEEcCCCCCCCCCCCcccCCHHHHHHHHHHHHHHhCCC
Confidence 5555663 477999999999999999999988876 7999999999999997643 4689999999999999999999
Q ss_pred cEEEEEechhHHHHHHHHhc-cCcccEEEEEcCc
Q 008512 495 PVHLIGNSIGGMFLSTNLTR-GKLYAFLLSVNYL 527 (563)
Q Consensus 495 ~i~lvGhS~Gg~ia~~~a~~-~~~~~~v~~~~~~ 527 (563)
+++++||||||++++.++.. ++.++.++++++.
T Consensus 81 ~~~l~G~S~Gg~~a~~~a~~~~~~v~~~i~~~~~ 114 (257)
T TIGR03611 81 RFHFVGHALGGLIGLQLALRYPERLLSLVLINAW 114 (257)
T ss_pred cEEEEEechhHHHHHHHHHHChHHhHHheeecCC
Confidence 99999999999999999876 6667777766653
No 25
>PLN03087 BODYGUARD 1 domain containing hydrolase; Provisional
Probab=99.62 E-value=1.1e-14 Score=156.90 Aligned_cols=123 Identities=20% Similarity=0.279 Sum_probs=103.1
Q ss_pred CCeeEEEEEECCeEEEEEEeCCC----CCeEEEECCCCCChHHHHH-HHHHHh---hCCCEEEEEcCCCCCCCCCCC-cC
Q 008512 404 GVYSTRIWRWNGYQIQYTVAGKE----GPAILLVHGFGAFLEHYRD-NIYDIA---DGGNRVWAITLLGFGRSEKPN-IV 474 (563)
Q Consensus 404 ~~~~~~~~~~~g~~l~y~~~g~~----~~~vlllHG~~~~~~~~~~-~~~~l~---~~g~~Vi~~D~~G~G~S~~~~-~~ 474 (563)
..+...+...+|.+++|...++. +++|||+||++++...|.. ++..|. +.+|+|+++|+||||.|+.+. ..
T Consensus 174 ~~~~~~~~~~~~~~l~~~~~gp~~~~~k~~VVLlHG~~~s~~~W~~~~~~~L~~~~~~~yrVia~Dl~G~G~S~~p~~~~ 253 (481)
T PLN03087 174 CKFCTSWLSSSNESLFVHVQQPKDNKAKEDVLFIHGFISSSAFWTETLFPNFSDAAKSTYRLFAVDLLGFGRSPKPADSL 253 (481)
T ss_pred cceeeeeEeeCCeEEEEEEecCCCCCCCCeEEEECCCCccHHHHHHHHHHHHHHHhhCCCEEEEECCCCCCCCcCCCCCc
Confidence 34556777888999999998864 4799999999999999985 446655 358999999999999998653 45
Q ss_pred CCHHHHHHHHH-HHHHHhCCCcEEEEEechhHHHHHHHHhc-cCcccEEEEEcC
Q 008512 475 YTELMWSELLR-DFTVEVVGEPVHLIGNSIGGMFLSTNLTR-GKLYAFLLSVNY 526 (563)
Q Consensus 475 ~~~~~~~~~l~-~~l~~l~~~~i~lvGhS~Gg~ia~~~a~~-~~~~~~v~~~~~ 526 (563)
++++++++++. .+++.++.++++++||||||++++.++.+ |+.++.++++++
T Consensus 254 ytl~~~a~~l~~~ll~~lg~~k~~LVGhSmGG~iAl~~A~~~Pe~V~~LVLi~~ 307 (481)
T PLN03087 254 YTLREHLEMIERSVLERYKVKSFHIVAHSLGCILALALAVKHPGAVKSLTLLAP 307 (481)
T ss_pred CCHHHHHHHHHHHHHHHcCCCCEEEEEECHHHHHHHHHHHhChHhccEEEEECC
Confidence 89999999994 88999999999999999999999999876 887877777664
No 26
>PRK10673 acyl-CoA esterase; Provisional
Probab=99.61 E-value=5.6e-15 Score=146.80 Aligned_cols=98 Identities=19% Similarity=0.226 Sum_probs=88.2
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHHhhCCCEEEEEcCCCCCCCCCCCcCCCHHHHHHHHHHHHHHhCCCcEEEEEechhH
Q 008512 426 EGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFTVEVVGEPVHLIGNSIGG 505 (563)
Q Consensus 426 ~~~~vlllHG~~~~~~~~~~~~~~l~~~g~~Vi~~D~~G~G~S~~~~~~~~~~~~~~~l~~~l~~l~~~~i~lvGhS~Gg 505 (563)
.+|+|||+||++++...|..++..|.+ +|+|+++|+||||.|..+. .++++++++|+.++++.++.++++|+||||||
T Consensus 15 ~~~~iv~lhG~~~~~~~~~~~~~~l~~-~~~vi~~D~~G~G~s~~~~-~~~~~~~~~d~~~~l~~l~~~~~~lvGhS~Gg 92 (255)
T PRK10673 15 NNSPIVLVHGLFGSLDNLGVLARDLVN-DHDIIQVDMRNHGLSPRDP-VMNYPAMAQDLLDTLDALQIEKATFIGHSMGG 92 (255)
T ss_pred CCCCEEEECCCCCchhHHHHHHHHHhh-CCeEEEECCCCCCCCCCCC-CCCHHHHHHHHHHHHHHcCCCceEEEEECHHH
Confidence 367999999999999999999999987 7999999999999997654 57999999999999999999999999999999
Q ss_pred HHHHHHHhc-cCcccEEEEEc
Q 008512 506 MFLSTNLTR-GKLYAFLLSVN 525 (563)
Q Consensus 506 ~ia~~~a~~-~~~~~~v~~~~ 525 (563)
.+++.+|.+ ++.++.+++++
T Consensus 93 ~va~~~a~~~~~~v~~lvli~ 113 (255)
T PRK10673 93 KAVMALTALAPDRIDKLVAID 113 (255)
T ss_pred HHHHHHHHhCHhhcceEEEEe
Confidence 999999887 77787777754
No 27
>PRK06489 hypothetical protein; Provisional
Probab=99.61 E-value=4.1e-15 Score=156.40 Aligned_cols=116 Identities=18% Similarity=0.219 Sum_probs=94.4
Q ss_pred EECCeEEEEEEeCCC--------CCeEEEECCCCCChHHHH--HHHHHH-------hhCCCEEEEEcCCCCCCCCCCCc-
Q 008512 412 RWNGYQIQYTVAGKE--------GPAILLVHGFGAFLEHYR--DNIYDI-------ADGGNRVWAITLLGFGRSEKPNI- 473 (563)
Q Consensus 412 ~~~g~~l~y~~~g~~--------~~~vlllHG~~~~~~~~~--~~~~~l-------~~~g~~Vi~~D~~G~G~S~~~~~- 473 (563)
+.+|.+++|...|+. +|+|||+||++++...|. .+.+.| ...+|+|+++|+||||.|+.+..
T Consensus 46 ~~~g~~i~y~~~G~~~~~~~~~~gpplvllHG~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~Via~Dl~GhG~S~~p~~~ 125 (360)
T PRK06489 46 TLPELRLHYTTLGTPHRNADGEIDNAVLVLHGTGGSGKSFLSPTFAGELFGPGQPLDASKYFIILPDGIGHGKSSKPSDG 125 (360)
T ss_pred CcCCceEEEEecCCCCcccccCCCCeEEEeCCCCCchhhhccchhHHHhcCCCCcccccCCEEEEeCCCCCCCCCCCCcC
Confidence 357899999998853 689999999999988775 455554 13479999999999999976532
Q ss_pred ------CCCHHHHHHHHHHHH-HHhCCCcEE-EEEechhHHHHHHHHhc-cCcccEEEEEcCc
Q 008512 474 ------VYTELMWSELLRDFT-VEVVGEPVH-LIGNSIGGMFLSTNLTR-GKLYAFLLSVNYL 527 (563)
Q Consensus 474 ------~~~~~~~~~~l~~~l-~~l~~~~i~-lvGhS~Gg~ia~~~a~~-~~~~~~v~~~~~~ 527 (563)
.++++++++++..++ ++++.++++ |+||||||++++.++.+ |+.++++++++..
T Consensus 126 ~~~~~~~~~~~~~a~~~~~~l~~~lgi~~~~~lvG~SmGG~vAl~~A~~~P~~V~~LVLi~s~ 188 (360)
T PRK06489 126 LRAAFPRYDYDDMVEAQYRLVTEGLGVKHLRLILGTSMGGMHAWMWGEKYPDFMDALMPMASQ 188 (360)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHhcCCCceeEEEEECHHHHHHHHHHHhCchhhheeeeeccC
Confidence 478999998888754 888988885 89999999999999987 8888888877653
No 28
>COG2267 PldB Lysophospholipase [Lipid metabolism]
Probab=99.61 E-value=9.2e-15 Score=149.22 Aligned_cols=126 Identities=26% Similarity=0.353 Sum_probs=104.5
Q ss_pred eeEEEEEECCeEEEEEEeCCC---CCeEEEECCCCCChHHHHHHHHHHhhCCCEEEEEcCCCCCCCC-CCC-cCCCHHHH
Q 008512 406 YSTRIWRWNGYQIQYTVAGKE---GPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSE-KPN-IVYTELMW 480 (563)
Q Consensus 406 ~~~~~~~~~g~~l~y~~~g~~---~~~vlllHG~~~~~~~~~~~~~~l~~~g~~Vi~~D~~G~G~S~-~~~-~~~~~~~~ 480 (563)
.+..+...+|..+.|..+... ..+||++||++++...|..++..|...||.|+++|+||||.|. +.. ...++.++
T Consensus 10 ~~~~~~~~d~~~~~~~~~~~~~~~~g~Vvl~HG~~Eh~~ry~~la~~l~~~G~~V~~~D~RGhG~S~r~~rg~~~~f~~~ 89 (298)
T COG2267 10 TEGYFTGADGTRLRYRTWAAPEPPKGVVVLVHGLGEHSGRYEELADDLAARGFDVYALDLRGHGRSPRGQRGHVDSFADY 89 (298)
T ss_pred ccceeecCCCceEEEEeecCCCCCCcEEEEecCchHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCCCCCcCCchhHHHH
Confidence 344677789999999998754 2589999999999999999999999999999999999999997 443 33458899
Q ss_pred HHHHHHHHHHhC----CCcEEEEEechhHHHHHHHHhc-cCcccEEEEEcCcCChH
Q 008512 481 SELLRDFTVEVV----GEPVHLIGNSIGGMFLSTNLTR-GKLYAFLLSVNYLLSRS 531 (563)
Q Consensus 481 ~~~l~~~l~~l~----~~~i~lvGhS~Gg~ia~~~a~~-~~~~~~v~~~~~~~~~~ 531 (563)
..|+..+++... ..+++|+||||||.+++.++.+ +..+.++++.+++....
T Consensus 90 ~~dl~~~~~~~~~~~~~~p~~l~gHSmGg~Ia~~~~~~~~~~i~~~vLssP~~~l~ 145 (298)
T COG2267 90 VDDLDAFVETIAEPDPGLPVFLLGHSMGGLIALLYLARYPPRIDGLVLSSPALGLG 145 (298)
T ss_pred HHHHHHHHHHHhccCCCCCeEEEEeCcHHHHHHHHHHhCCccccEEEEECccccCC
Confidence 999999998875 4789999999999999999987 55666666666554444
No 29
>PLN02298 hydrolase, alpha/beta fold family protein
Probab=99.61 E-value=5.9e-15 Score=153.19 Aligned_cols=119 Identities=22% Similarity=0.170 Sum_probs=94.7
Q ss_pred EEEEECCeEEEEEEeCCC-----CCeEEEECCCCCCh-HHHHHHHHHHhhCCCEEEEEcCCCCCCCCCCCc-CCCHHHHH
Q 008512 409 RIWRWNGYQIQYTVAGKE-----GPAILLVHGFGAFL-EHYRDNIYDIADGGNRVWAITLLGFGRSEKPNI-VYTELMWS 481 (563)
Q Consensus 409 ~~~~~~g~~l~y~~~g~~-----~~~vlllHG~~~~~-~~~~~~~~~l~~~g~~Vi~~D~~G~G~S~~~~~-~~~~~~~~ 481 (563)
.+...+|.+|+|..+++. +++|||+||++++. ..|..++..|++.||+|+++|+||||.|.+... ..+++.++
T Consensus 36 ~~~~~dg~~l~~~~~~~~~~~~~~~~VvllHG~~~~~~~~~~~~~~~L~~~Gy~V~~~D~rGhG~S~~~~~~~~~~~~~~ 115 (330)
T PLN02298 36 FFTSPRGLSLFTRSWLPSSSSPPRALIFMVHGYGNDISWTFQSTAIFLAQMGFACFALDLEGHGRSEGLRAYVPNVDLVV 115 (330)
T ss_pred eEEcCCCCEEEEEEEecCCCCCCceEEEEEcCCCCCcceehhHHHHHHHhCCCEEEEecCCCCCCCCCccccCCCHHHHH
Confidence 444569999999877532 34699999998664 356677888988899999999999999975432 45788899
Q ss_pred HHHHHHHHHhCC------CcEEEEEechhHHHHHHHHhc-cCcccEEEEEcCc
Q 008512 482 ELLRDFTVEVVG------EPVHLIGNSIGGMFLSTNLTR-GKLYAFLLSVNYL 527 (563)
Q Consensus 482 ~~l~~~l~~l~~------~~i~lvGhS~Gg~ia~~~a~~-~~~~~~v~~~~~~ 527 (563)
+|+.++++.+.. .+++|+||||||++++.++.. |+.++.++++.+.
T Consensus 116 ~D~~~~i~~l~~~~~~~~~~i~l~GhSmGG~ia~~~a~~~p~~v~~lvl~~~~ 168 (330)
T PLN02298 116 EDCLSFFNSVKQREEFQGLPRFLYGESMGGAICLLIHLANPEGFDGAVLVAPM 168 (330)
T ss_pred HHHHHHHHHHHhcccCCCCCEEEEEecchhHHHHHHHhcCcccceeEEEeccc
Confidence 999999987743 479999999999999998876 7767777766553
No 30
>TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase. Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself.
Probab=99.61 E-value=9.1e-15 Score=147.62 Aligned_cols=111 Identities=25% Similarity=0.352 Sum_probs=89.6
Q ss_pred CeEEEEEEeCCCCCeEEEECCCCCChHHHHH---HHHHHhhCCCEEEEEcCCCCCCCCCCCcC-CCHHHHHHHHHHHHHH
Q 008512 415 GYQIQYTVAGKEGPAILLVHGFGAFLEHYRD---NIYDIADGGNRVWAITLLGFGRSEKPNIV-YTELMWSELLRDFTVE 490 (563)
Q Consensus 415 g~~l~y~~~g~~~~~vlllHG~~~~~~~~~~---~~~~l~~~g~~Vi~~D~~G~G~S~~~~~~-~~~~~~~~~l~~~l~~ 490 (563)
|.+++|...| ++++|||+||++++...|.. .+..+.+.||+|+++|+||||.|+..... .....+++++.++++.
T Consensus 19 ~~~~~y~~~g-~~~~ivllHG~~~~~~~~~~~~~~~~~l~~~~~~vi~~D~~G~G~S~~~~~~~~~~~~~~~~l~~~l~~ 97 (282)
T TIGR03343 19 NFRIHYNEAG-NGEAVIMLHGGGPGAGGWSNYYRNIGPFVDAGYRVILKDSPGFNKSDAVVMDEQRGLVNARAVKGLMDA 97 (282)
T ss_pred ceeEEEEecC-CCCeEEEECCCCCchhhHHHHHHHHHHHHhCCCEEEEECCCCCCCCCCCcCcccccchhHHHHHHHHHH
Confidence 5679998877 56889999999988766653 45667677999999999999999765321 1222468899999999
Q ss_pred hCCCcEEEEEechhHHHHHHHHhc-cCcccEEEEEcC
Q 008512 491 VVGEPVHLIGNSIGGMFLSTNLTR-GKLYAFLLSVNY 526 (563)
Q Consensus 491 l~~~~i~lvGhS~Gg~ia~~~a~~-~~~~~~v~~~~~ 526 (563)
++.++++++||||||.+++.++.+ |+.++.++++++
T Consensus 98 l~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~ 134 (282)
T TIGR03343 98 LDIEKAHLVGNSMGGATALNFALEYPDRIGKLILMGP 134 (282)
T ss_pred cCCCCeeEEEECchHHHHHHHHHhChHhhceEEEECC
Confidence 999999999999999999999987 777777777654
No 31
>TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=99.60 E-value=4.4e-15 Score=145.06 Aligned_cols=108 Identities=19% Similarity=0.249 Sum_probs=93.0
Q ss_pred EEEEEeCC--CCCeEEEECCCCCChHHHHHHHHHHhhCCCEEEEEcCCCCCCCCCCCcCCCHHHHHHHHHHHHHHhCCCc
Q 008512 418 IQYTVAGK--EGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFTVEVVGEP 495 (563)
Q Consensus 418 l~y~~~g~--~~~~vlllHG~~~~~~~~~~~~~~l~~~g~~Vi~~D~~G~G~S~~~~~~~~~~~~~~~l~~~l~~l~~~~ 495 (563)
++|..+|+ ++|+|||+||++++...|..+++.|.. ||+|+++|+||||.|+.+...++.+++++++.++++.++.++
T Consensus 2 ~~~~~~g~~~~~~~li~~hg~~~~~~~~~~~~~~l~~-~~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~i~~~~~~~ 80 (251)
T TIGR02427 2 LHYRLDGAADGAPVLVFINSLGTDLRMWDPVLPALTP-DFRVLRYDKRGHGLSDAPEGPYSIEDLADDVLALLDHLGIER 80 (251)
T ss_pred ceEEeecCCCCCCeEEEEcCcccchhhHHHHHHHhhc-ccEEEEecCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCc
Confidence 56766765 367899999999999999999998876 899999999999999776667899999999999999999899
Q ss_pred EEEEEechhHHHHHHHHhc-cCcccEEEEEcC
Q 008512 496 VHLIGNSIGGMFLSTNLTR-GKLYAFLLSVNY 526 (563)
Q Consensus 496 i~lvGhS~Gg~ia~~~a~~-~~~~~~v~~~~~ 526 (563)
++++||||||++++.+|.. |+.++.++++++
T Consensus 81 v~liG~S~Gg~~a~~~a~~~p~~v~~li~~~~ 112 (251)
T TIGR02427 81 AVFCGLSLGGLIAQGLAARRPDRVRALVLSNT 112 (251)
T ss_pred eEEEEeCchHHHHHHHHHHCHHHhHHHhhccC
Confidence 9999999999999998876 666666655543
No 32
>PRK10349 carboxylesterase BioH; Provisional
Probab=99.59 E-value=6.9e-15 Score=146.76 Aligned_cols=103 Identities=21% Similarity=0.277 Sum_probs=85.8
Q ss_pred EEEEEeCCCCCeEEEECCCCCChHHHHHHHHHHhhCCCEEEEEcCCCCCCCCCCCcCCCHHHHHHHHHHHHHHhCCCcEE
Q 008512 418 IQYTVAGKEGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFTVEVVGEPVH 497 (563)
Q Consensus 418 l~y~~~g~~~~~vlllHG~~~~~~~~~~~~~~l~~~g~~Vi~~D~~G~G~S~~~~~~~~~~~~~~~l~~~l~~l~~~~i~ 497 (563)
++|...|.+.++|||+||++++...|..+++.|.+ +|+|+++|+||||.|+... .++++++++++. ++..++++
T Consensus 4 ~~y~~~G~g~~~ivllHG~~~~~~~w~~~~~~L~~-~~~vi~~Dl~G~G~S~~~~-~~~~~~~~~~l~----~~~~~~~~ 77 (256)
T PRK10349 4 IWWQTKGQGNVHLVLLHGWGLNAEVWRCIDEELSS-HFTLHLVDLPGFGRSRGFG-ALSLADMAEAVL----QQAPDKAI 77 (256)
T ss_pred cchhhcCCCCCeEEEECCCCCChhHHHHHHHHHhc-CCEEEEecCCCCCCCCCCC-CCCHHHHHHHHH----hcCCCCeE
Confidence 66777775455799999999999999999999987 5999999999999997653 567777776654 35668999
Q ss_pred EEEechhHHHHHHHHhc-cCcccEEEEEcC
Q 008512 498 LIGNSIGGMFLSTNLTR-GKLYAFLLSVNY 526 (563)
Q Consensus 498 lvGhS~Gg~ia~~~a~~-~~~~~~v~~~~~ 526 (563)
++||||||.+++.+|.+ |+.++.++++++
T Consensus 78 lvGhS~Gg~ia~~~a~~~p~~v~~lili~~ 107 (256)
T PRK10349 78 WLGWSLGGLVASQIALTHPERVQALVTVAS 107 (256)
T ss_pred EEEECHHHHHHHHHHHhChHhhheEEEecC
Confidence 99999999999999886 888888877655
No 33
>PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional
Probab=99.59 E-value=1.1e-14 Score=143.71 Aligned_cols=97 Identities=20% Similarity=0.079 Sum_probs=85.0
Q ss_pred CCeEEEECCCCCChHHHHHHHHHHhhCCCEEEEEcCCCCCCCCCCCcCCCHHHHHHHHHHHHHHhCCCcEEEEEechhHH
Q 008512 427 GPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFTVEVVGEPVHLIGNSIGGM 506 (563)
Q Consensus 427 ~~~vlllHG~~~~~~~~~~~~~~l~~~g~~Vi~~D~~G~G~S~~~~~~~~~~~~~~~l~~~l~~l~~~~i~lvGhS~Gg~ 506 (563)
+|+|||+||++++...|..+++.| + +|+|+++|+||||.|+.+. ..+++++++++.+++++++.++++++||||||.
T Consensus 2 ~p~vvllHG~~~~~~~w~~~~~~l-~-~~~vi~~D~~G~G~S~~~~-~~~~~~~~~~l~~~l~~~~~~~~~lvG~S~Gg~ 78 (242)
T PRK11126 2 LPWLVFLHGLLGSGQDWQPVGEAL-P-DYPRLYIDLPGHGGSAAIS-VDGFADVSRLLSQTLQSYNILPYWLVGYSLGGR 78 (242)
T ss_pred CCEEEEECCCCCChHHHHHHHHHc-C-CCCEEEecCCCCCCCCCcc-ccCHHHHHHHHHHHHHHcCCCCeEEEEECHHHH
Confidence 578999999999999999999988 4 6999999999999997654 358999999999999999999999999999999
Q ss_pred HHHHHHhc-cC-cccEEEEEcC
Q 008512 507 FLSTNLTR-GK-LYAFLLSVNY 526 (563)
Q Consensus 507 ia~~~a~~-~~-~~~~v~~~~~ 526 (563)
+++.+|.+ ++ .++.+++.++
T Consensus 79 va~~~a~~~~~~~v~~lvl~~~ 100 (242)
T PRK11126 79 IAMYYACQGLAGGLCGLIVEGG 100 (242)
T ss_pred HHHHHHHhCCcccccEEEEeCC
Confidence 99999886 44 3777766554
No 34
>TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase
Probab=99.59 E-value=2.9e-14 Score=142.64 Aligned_cols=119 Identities=23% Similarity=0.272 Sum_probs=96.0
Q ss_pred EEEECCeEEEEEEeCCC--CCeEEEECCCCCChH-HHHHHHHHHhhCCCEEEEEcCCCCCCCCCCCc---CCCHHHHHHH
Q 008512 410 IWRWNGYQIQYTVAGKE--GPAILLVHGFGAFLE-HYRDNIYDIADGGNRVWAITLLGFGRSEKPNI---VYTELMWSEL 483 (563)
Q Consensus 410 ~~~~~g~~l~y~~~g~~--~~~vlllHG~~~~~~-~~~~~~~~l~~~g~~Vi~~D~~G~G~S~~~~~---~~~~~~~~~~ 483 (563)
+++.+|..+.|...+++ +++|||+||++++.. .|..+...+.+.||+|+++|+||||.|..+.. .+++++++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~vl~~hG~~g~~~~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~~~~ 85 (288)
T TIGR01250 6 IITVDGGYHLFTKTGGEGEKIKLLLLHGGPGMSHEYLENLRELLKEEGREVIMYDQLGCGYSDQPDDSDELWTIDYFVDE 85 (288)
T ss_pred eecCCCCeEEEEeccCCCCCCeEEEEcCCCCccHHHHHHHHHHHHhcCCEEEEEcCCCCCCCCCCCcccccccHHHHHHH
Confidence 56677888888776643 578999999876654 44555556665589999999999999976532 3789999999
Q ss_pred HHHHHHHhCCCcEEEEEechhHHHHHHHHhc-cCcccEEEEEcCcC
Q 008512 484 LRDFTVEVVGEPVHLIGNSIGGMFLSTNLTR-GKLYAFLLSVNYLL 528 (563)
Q Consensus 484 l~~~l~~l~~~~i~lvGhS~Gg~ia~~~a~~-~~~~~~v~~~~~~~ 528 (563)
+.+++++++.++++++||||||.+++.++.. ++.+..+++.++..
T Consensus 86 ~~~~~~~~~~~~~~liG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 131 (288)
T TIGR01250 86 LEEVREKLGLDKFYLLGHSWGGMLAQEYALKYGQHLKGLIISSMLD 131 (288)
T ss_pred HHHHHHHcCCCcEEEEEeehHHHHHHHHHHhCccccceeeEecccc
Confidence 9999999999999999999999999999887 77777777766543
No 35
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=99.57 E-value=1.7e-14 Score=138.34 Aligned_cols=100 Identities=28% Similarity=0.348 Sum_probs=89.4
Q ss_pred EEEECCCCCChHHHHHHHHHHhhCCCEEEEEcCCCCCCCCCCC--cCCCHHHHHHHHHHHHHHhCCCcEEEEEechhHHH
Q 008512 430 ILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPN--IVYTELMWSELLRDFTVEVVGEPVHLIGNSIGGMF 507 (563)
Q Consensus 430 vlllHG~~~~~~~~~~~~~~l~~~g~~Vi~~D~~G~G~S~~~~--~~~~~~~~~~~l~~~l~~l~~~~i~lvGhS~Gg~i 507 (563)
|||+||++++...|..+++.|+ .||+|+++|+||||.|+... ..++++++++++.+++++++.++++++|||+||.+
T Consensus 1 vv~~hG~~~~~~~~~~~~~~l~-~~~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lvG~S~Gg~~ 79 (228)
T PF12697_consen 1 VVFLHGFGGSSESWDPLAEALA-RGYRVIAFDLPGHGRSDPPPDYSPYSIEDYAEDLAELLDALGIKKVILVGHSMGGMI 79 (228)
T ss_dssp EEEE-STTTTGGGGHHHHHHHH-TTSEEEEEECTTSTTSSSHSSGSGGSHHHHHHHHHHHHHHTTTSSEEEEEETHHHHH
T ss_pred eEEECCCCCCHHHHHHHHHHHh-CCCEEEEEecCCccccccccccCCcchhhhhhhhhhccccccccccccccccccccc
Confidence 7999999999999999999996 59999999999999998755 36789999999999999999999999999999999
Q ss_pred HHHHHhc-cCcccEEEEEcCcCCh
Q 008512 508 LSTNLTR-GKLYAFLLSVNYLLSR 530 (563)
Q Consensus 508 a~~~a~~-~~~~~~v~~~~~~~~~ 530 (563)
++.++.. |+.++.++++++....
T Consensus 80 a~~~a~~~p~~v~~~vl~~~~~~~ 103 (228)
T PF12697_consen 80 ALRLAARYPDRVKGLVLLSPPPPL 103 (228)
T ss_dssp HHHHHHHSGGGEEEEEEESESSSH
T ss_pred ccccccccccccccceeecccccc
Confidence 9999986 8888888887776653
No 36
>PRK08775 homoserine O-acetyltransferase; Provisional
Probab=99.57 E-value=7.9e-15 Score=153.21 Aligned_cols=121 Identities=14% Similarity=0.112 Sum_probs=96.9
Q ss_pred CeeEEEEEECCeEEEEEEeCCCCCeEEEECCCCCChH------------HHHHHHH---HHhhCCCEEEEEcCCCCCCCC
Q 008512 405 VYSTRIWRWNGYQIQYTVAGKEGPAILLVHGFGAFLE------------HYRDNIY---DIADGGNRVWAITLLGFGRSE 469 (563)
Q Consensus 405 ~~~~~~~~~~g~~l~y~~~g~~~~~vlllHG~~~~~~------------~~~~~~~---~l~~~g~~Vi~~D~~G~G~S~ 469 (563)
.+...+.+.+|.+++|...|+.++++||+||+.++.. .|..++. .|...+|+|+++|+||||.|.
T Consensus 35 ~~~~~~~~~~~~~l~y~~~G~~~~p~vll~g~~~~~~~~~~~~~~~~~~~w~~~v~~~~~L~~~~~~Vi~~Dl~G~g~s~ 114 (343)
T PRK08775 35 PLSMRHAGLEDLRLRYELIGPAGAPVVFVAGGISAHRHVAATATFPEKGWWEGLVGSGRALDPARFRLLAFDFIGADGSL 114 (343)
T ss_pred ceeecCCCCCCceEEEEEeccCCCCEEEEecCCCcccccccccCCCCCCcchhccCCCCccCccccEEEEEeCCCCCCCC
Confidence 4556666778999999999865555677766655544 6877776 564447999999999999884
Q ss_pred CCCcCCCHHHHHHHHHHHHHHhCCCc-EEEEEechhHHHHHHHHhc-cCcccEEEEEcCc
Q 008512 470 KPNIVYTELMWSELLRDFTVEVVGEP-VHLIGNSIGGMFLSTNLTR-GKLYAFLLSVNYL 527 (563)
Q Consensus 470 ~~~~~~~~~~~~~~l~~~l~~l~~~~-i~lvGhS~Gg~ia~~~a~~-~~~~~~v~~~~~~ 527 (563)
. ..++.+++++++.+++++++.++ ++|+||||||++++.+|.+ |+.++.++++++.
T Consensus 115 ~--~~~~~~~~a~dl~~ll~~l~l~~~~~lvG~SmGG~vA~~~A~~~P~~V~~LvLi~s~ 172 (343)
T PRK08775 115 D--VPIDTADQADAIALLLDALGIARLHAFVGYSYGALVGLQFASRHPARVRTLVVVSGA 172 (343)
T ss_pred C--CCCCHHHHHHHHHHHHHHcCCCcceEEEEECHHHHHHHHHHHHChHhhheEEEECcc
Confidence 3 35788999999999999999876 5799999999999999987 8888888887664
No 37
>TIGR03101 hydr2_PEP hydrolase, ortholog 2, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 1, TIGR03100) of the same superfamily.
Probab=99.53 E-value=2.9e-13 Score=135.54 Aligned_cols=104 Identities=19% Similarity=0.150 Sum_probs=82.8
Q ss_pred CCeEEEECCCCCC----hHHHHHHHHHHhhCCCEEEEEcCCCCCCCCCCCcCCCHHHHHHHHHHHHH---HhCCCcEEEE
Q 008512 427 GPAILLVHGFGAF----LEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFTV---EVVGEPVHLI 499 (563)
Q Consensus 427 ~~~vlllHG~~~~----~~~~~~~~~~l~~~g~~Vi~~D~~G~G~S~~~~~~~~~~~~~~~l~~~l~---~l~~~~i~lv 499 (563)
.++|||+||++++ ...|..+++.|++.||.|+++|+||||.|.+.....+++.+.+|+..+++ +.+..+++|+
T Consensus 25 ~~~VlllHG~g~~~~~~~~~~~~la~~La~~Gy~Vl~~Dl~G~G~S~g~~~~~~~~~~~~Dv~~ai~~L~~~~~~~v~Lv 104 (266)
T TIGR03101 25 RGVVIYLPPFAEEMNKSRRMVALQARAFAAGGFGVLQIDLYGCGDSAGDFAAARWDVWKEDVAAAYRWLIEQGHPPVTLW 104 (266)
T ss_pred ceEEEEECCCcccccchhHHHHHHHHHHHHCCCEEEEECCCCCCCCCCccccCCHHHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 4689999999864 34566778999988999999999999999876555678888888777554 4456899999
Q ss_pred EechhHHHHHHHHhc-cCcccEEEEEcCcCCh
Q 008512 500 GNSIGGMFLSTNLTR-GKLYAFLLSVNYLLSR 530 (563)
Q Consensus 500 GhS~Gg~ia~~~a~~-~~~~~~v~~~~~~~~~ 530 (563)
||||||.+++.++.+ ++.++.+++.++....
T Consensus 105 G~SmGG~vAl~~A~~~p~~v~~lVL~~P~~~g 136 (266)
T TIGR03101 105 GLRLGALLALDAANPLAAKCNRLVLWQPVVSG 136 (266)
T ss_pred EECHHHHHHHHHHHhCccccceEEEeccccch
Confidence 999999999998876 6777766666664443
No 38
>KOG1455 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=99.52 E-value=1.4e-13 Score=135.51 Aligned_cols=121 Identities=21% Similarity=0.223 Sum_probs=100.4
Q ss_pred EEEEECCeEEEEEEeCCC-----CCeEEEECCCCCCh-HHHHHHHHHHhhCCCEEEEEcCCCCCCCCCCC-cCCCHHHHH
Q 008512 409 RIWRWNGYQIQYTVAGKE-----GPAILLVHGFGAFL-EHYRDNIYDIADGGNRVWAITLLGFGRSEKPN-IVYTELMWS 481 (563)
Q Consensus 409 ~~~~~~g~~l~y~~~g~~-----~~~vlllHG~~~~~-~~~~~~~~~l~~~g~~Vi~~D~~G~G~S~~~~-~~~~~~~~~ 481 (563)
.+.+.+|.++.+..|.+. ...|+++||++++. ..|..++..|+..||.|+++|++|||.|++.. ...+++..+
T Consensus 31 ~~~n~rG~~lft~~W~p~~~~~pr~lv~~~HG~g~~~s~~~~~~a~~l~~~g~~v~a~D~~GhG~SdGl~~yi~~~d~~v 110 (313)
T KOG1455|consen 31 FFTNPRGAKLFTQSWLPLSGTEPRGLVFLCHGYGEHSSWRYQSTAKRLAKSGFAVYAIDYEGHGRSDGLHAYVPSFDLVV 110 (313)
T ss_pred eEEcCCCCEeEEEecccCCCCCCceEEEEEcCCcccchhhHHHHHHHHHhCCCeEEEeeccCCCcCCCCcccCCcHHHHH
Confidence 344568889999988752 23699999999875 78889999999999999999999999999865 456888899
Q ss_pred HHHHHHHHHh------CCCcEEEEEechhHHHHHHHHhc-cCcccEEEEEcCcCC
Q 008512 482 ELLRDFTVEV------VGEPVHLIGNSIGGMFLSTNLTR-GKLYAFLLSVNYLLS 529 (563)
Q Consensus 482 ~~l~~~l~~l------~~~~i~lvGhS~Gg~ia~~~a~~-~~~~~~v~~~~~~~~ 529 (563)
+|+..+.+.. ...+.+|+||||||.+++.++.+ |.....++++.+++.
T Consensus 111 ~D~~~~~~~i~~~~e~~~lp~FL~GeSMGGAV~Ll~~~k~p~~w~G~ilvaPmc~ 165 (313)
T KOG1455|consen 111 DDVISFFDSIKEREENKGLPRFLFGESMGGAVALLIALKDPNFWDGAILVAPMCK 165 (313)
T ss_pred HHHHHHHHHHhhccccCCCCeeeeecCcchHHHHHHHhhCCcccccceeeecccc
Confidence 9999888754 34789999999999999999885 888777777766554
No 39
>PRK05855 short chain dehydrogenase; Validated
Probab=99.51 E-value=1.3e-13 Score=153.82 Aligned_cols=108 Identities=25% Similarity=0.309 Sum_probs=94.5
Q ss_pred EEEEEECCeEEEEEEeCCC-CCeEEEECCCCCChHHHHHHHHHHhhCCCEEEEEcCCCCCCCCCCC--cCCCHHHHHHHH
Q 008512 408 TRIWRWNGYQIQYTVAGKE-GPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPN--IVYTELMWSELL 484 (563)
Q Consensus 408 ~~~~~~~g~~l~y~~~g~~-~~~vlllHG~~~~~~~~~~~~~~l~~~g~~Vi~~D~~G~G~S~~~~--~~~~~~~~~~~l 484 (563)
..++..+|.+++|..+|++ +|+|||+||++++...|..+++.|.+ ||+|+++|+||||.|+.+. ..++++++++|+
T Consensus 5 ~~~~~~~g~~l~~~~~g~~~~~~ivllHG~~~~~~~w~~~~~~L~~-~~~Vi~~D~~G~G~S~~~~~~~~~~~~~~a~dl 83 (582)
T PRK05855 5 RTVVSSDGVRLAVYEWGDPDRPTVVLVHGYPDNHEVWDGVAPLLAD-RFRVVAYDVRGAGRSSAPKRTAAYTLARLADDF 83 (582)
T ss_pred EEEEeeCCEEEEEEEcCCCCCCeEEEEcCCCchHHHHHHHHHHhhc-ceEEEEecCCCCCCCCCCCcccccCHHHHHHHH
Confidence 4566789999999998854 78999999999999999999999954 8999999999999997643 467899999999
Q ss_pred HHHHHHhCCCc-EEEEEechhHHHHHHHHhccC
Q 008512 485 RDFTVEVVGEP-VHLIGNSIGGMFLSTNLTRGK 516 (563)
Q Consensus 485 ~~~l~~l~~~~-i~lvGhS~Gg~ia~~~a~~~~ 516 (563)
.++++.++..+ ++|+||||||++++.++.+++
T Consensus 84 ~~~i~~l~~~~~~~lvGhS~Gg~~a~~~a~~~~ 116 (582)
T PRK05855 84 AAVIDAVSPDRPVHLLAHDWGSIQGWEAVTRPR 116 (582)
T ss_pred HHHHHHhCCCCcEEEEecChHHHHHHHHHhCcc
Confidence 99999998755 999999999999988887643
No 40
>PLN02652 hydrolase; alpha/beta fold family protein
Probab=99.51 E-value=1.9e-13 Score=144.89 Aligned_cols=117 Identities=15% Similarity=0.183 Sum_probs=94.7
Q ss_pred EEECCeEEEEEEeCCC----CCeEEEECCCCCChHHHHHHHHHHhhCCCEEEEEcCCCCCCCCCCC-cCCCHHHHHHHHH
Q 008512 411 WRWNGYQIQYTVAGKE----GPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPN-IVYTELMWSELLR 485 (563)
Q Consensus 411 ~~~~g~~l~y~~~g~~----~~~vlllHG~~~~~~~~~~~~~~l~~~g~~Vi~~D~~G~G~S~~~~-~~~~~~~~~~~l~ 485 (563)
...++..+++..|.+. +++|||+||++++...|..+++.|++.||+|+++|+||||.|++.. ...+++.+.+|+.
T Consensus 116 ~~~~~~~l~~~~~~p~~~~~~~~Vl~lHG~~~~~~~~~~~a~~L~~~Gy~V~~~D~rGhG~S~~~~~~~~~~~~~~~Dl~ 195 (395)
T PLN02652 116 YGARRNALFCRSWAPAAGEMRGILIIIHGLNEHSGRYLHFAKQLTSCGFGVYAMDWIGHGGSDGLHGYVPSLDYVVEDTE 195 (395)
T ss_pred ECCCCCEEEEEEecCCCCCCceEEEEECCchHHHHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCCCCCcCHHHHHHHHH
Confidence 3346778888887652 4589999999999999999999999889999999999999998754 3457888889999
Q ss_pred HHHHHhCC----CcEEEEEechhHHHHHHHHhccC---cccEEEEEcCc
Q 008512 486 DFTVEVVG----EPVHLIGNSIGGMFLSTNLTRGK---LYAFLLSVNYL 527 (563)
Q Consensus 486 ~~l~~l~~----~~i~lvGhS~Gg~ia~~~a~~~~---~~~~v~~~~~~ 527 (563)
++++.+.. .+++|+||||||.+++.++..++ .+..+++.++.
T Consensus 196 ~~l~~l~~~~~~~~i~lvGhSmGG~ial~~a~~p~~~~~v~glVL~sP~ 244 (395)
T PLN02652 196 AFLEKIRSENPGVPCFLFGHSTGGAVVLKAASYPSIEDKLEGIVLTSPA 244 (395)
T ss_pred HHHHHHHHhCCCCCEEEEEECHHHHHHHHHHhccCcccccceEEEECcc
Confidence 98887652 47999999999999998877653 45666665553
No 41
>TIGR01392 homoserO_Ac_trn homoserine O-acetyltransferase. This family describes homoserine-O-acetyltransferase, an enzyme of methionine biosynthesis. This model has been rebuilt to identify sequences more broadly, including a number of sequences suggested to be homoserine O-acetyltransferase based on proximity to other Met biosynthesis genes.
Probab=99.51 E-value=9.7e-14 Score=145.49 Aligned_cols=118 Identities=16% Similarity=0.148 Sum_probs=95.0
Q ss_pred EECCeEEEEEEeCC----CCCeEEEECCCCCChH-----------HHHHHH---HHHhhCCCEEEEEcCCC--CCCCCCC
Q 008512 412 RWNGYQIQYTVAGK----EGPAILLVHGFGAFLE-----------HYRDNI---YDIADGGNRVWAITLLG--FGRSEKP 471 (563)
Q Consensus 412 ~~~g~~l~y~~~g~----~~~~vlllHG~~~~~~-----------~~~~~~---~~l~~~g~~Vi~~D~~G--~G~S~~~ 471 (563)
..+|.+|+|..+|+ .+++|||+||++++.. .|..++ ..|...+|+|+++|+|| ||.|...
T Consensus 12 ~~~~~~~~y~~~g~~~~~~~~~vll~Hg~~~~~~~~~~~~~~~~~~w~~~~~~~~~l~~~~~~vi~~D~~G~~~g~s~~~ 91 (351)
T TIGR01392 12 VLSDVRVAYETYGTLNAERSNAVLVCHALTGDAHVAGYHDDGDPGWWDDLIGPGRAIDTDRYFVVCSNVLGGCYGSTGPS 91 (351)
T ss_pred ccCCceEEEEeccccCCCCCCEEEEcCCcCcchhhcccCCCCCCCchhhccCCCCCcCCCceEEEEecCCCCCCCCCCCC
Confidence 34789999999984 2578999999999763 366665 25555689999999999 6665431
Q ss_pred ----C--------cCCCHHHHHHHHHHHHHHhCCCc-EEEEEechhHHHHHHHHhc-cCcccEEEEEcCcCC
Q 008512 472 ----N--------IVYTELMWSELLRDFTVEVVGEP-VHLIGNSIGGMFLSTNLTR-GKLYAFLLSVNYLLS 529 (563)
Q Consensus 472 ----~--------~~~~~~~~~~~l~~~l~~l~~~~-i~lvGhS~Gg~ia~~~a~~-~~~~~~v~~~~~~~~ 529 (563)
. ..++++++++++..++++++.++ ++|+||||||++++.++.+ |+.++.+++++....
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~G~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~ 163 (351)
T TIGR01392 92 SINPGGRPYGSDFPLITIRDDVKAQKLLLDHLGIEQIAAVVGGSMGGMQALEWAIDYPERVRAIVVLATSAR 163 (351)
T ss_pred CCCCCCCcCCCCCCCCcHHHHHHHHHHHHHHcCCCCceEEEEECHHHHHHHHHHHHChHhhheEEEEccCCc
Confidence 1 14789999999999999999998 9999999999999999887 888888887776543
No 42
>TIGR01249 pro_imino_pep_1 proline iminopeptidase, Neisseria-type subfamily. This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members.
Probab=99.51 E-value=1.3e-13 Score=141.69 Aligned_cols=114 Identities=13% Similarity=0.069 Sum_probs=91.8
Q ss_pred ECCeEEEEEEeCCC-CCeEEEECCCCCChHHHHHHHHHHhhCCCEEEEEcCCCCCCCCCCC--cCCCHHHHHHHHHHHHH
Q 008512 413 WNGYQIQYTVAGKE-GPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPN--IVYTELMWSELLRDFTV 489 (563)
Q Consensus 413 ~~g~~l~y~~~g~~-~~~vlllHG~~~~~~~~~~~~~~l~~~g~~Vi~~D~~G~G~S~~~~--~~~~~~~~~~~l~~~l~ 489 (563)
.+|.+++|...|++ +++|||+||++++...+ .+...+...+|+|+++|+||||.|+.+. ..++.+++++++..+++
T Consensus 12 ~~~~~l~y~~~g~~~~~~lvllHG~~~~~~~~-~~~~~~~~~~~~vi~~D~~G~G~S~~~~~~~~~~~~~~~~dl~~l~~ 90 (306)
T TIGR01249 12 SDNHQLYYEQSGNPDGKPVVFLHGGPGSGTDP-GCRRFFDPETYRIVLFDQRGCGKSTPHACLEENTTWDLVADIEKLRE 90 (306)
T ss_pred CCCcEEEEEECcCCCCCEEEEECCCCCCCCCH-HHHhccCccCCEEEEECCCCCCCCCCCCCcccCCHHHHHHHHHHHHH
Confidence 36789999988753 67899999988765443 3444555568999999999999998653 24678899999999999
Q ss_pred HhCCCcEEEEEechhHHHHHHHHhc-cCcccEEEEEcCc
Q 008512 490 EVVGEPVHLIGNSIGGMFLSTNLTR-GKLYAFLLSVNYL 527 (563)
Q Consensus 490 ~l~~~~i~lvGhS~Gg~ia~~~a~~-~~~~~~v~~~~~~ 527 (563)
.++.++++++||||||.+++.++.+ ++.++.+++.+..
T Consensus 91 ~l~~~~~~lvG~S~GG~ia~~~a~~~p~~v~~lvl~~~~ 129 (306)
T TIGR01249 91 KLGIKNWLVFGGSWGSTLALAYAQTHPEVVTGLVLRGIF 129 (306)
T ss_pred HcCCCCEEEEEECHHHHHHHHHHHHChHhhhhheeeccc
Confidence 9999999999999999999999876 7776766666543
No 43
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=99.51 E-value=2e-13 Score=143.61 Aligned_cols=116 Identities=28% Similarity=0.332 Sum_probs=100.1
Q ss_pred EEEECCeEEEEEEeCC-CCCeEEEECCCCCChHHHHHHHHHHhhCCCEEEEEcCCCCCCCCCCCcCCCHHHHHHHHHHHH
Q 008512 410 IWRWNGYQIQYTVAGK-EGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFT 488 (563)
Q Consensus 410 ~~~~~g~~l~y~~~g~-~~~~vlllHG~~~~~~~~~~~~~~l~~~g~~Vi~~D~~G~G~S~~~~~~~~~~~~~~~l~~~l 488 (563)
....++.+++|...++ ++++|||+||++++...|..++..|.. +|+|+++|+||||.|.......+++++++++.+++
T Consensus 113 ~~~~~~~~i~~~~~g~~~~~~vl~~HG~~~~~~~~~~~~~~l~~-~~~v~~~d~~g~G~s~~~~~~~~~~~~~~~~~~~~ 191 (371)
T PRK14875 113 KARIGGRTVRYLRLGEGDGTPVVLIHGFGGDLNNWLFNHAALAA-GRPVIALDLPGHGASSKAVGAGSLDELAAAVLAFL 191 (371)
T ss_pred cceEcCcEEEEecccCCCCCeEEEECCCCCccchHHHHHHHHhc-CCEEEEEcCCCCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 3455788889988875 378999999999999999999999887 59999999999999976656788999999999999
Q ss_pred HHhCCCcEEEEEechhHHHHHHHHhc-cCcccEEEEEcC
Q 008512 489 VEVVGEPVHLIGNSIGGMFLSTNLTR-GKLYAFLLSVNY 526 (563)
Q Consensus 489 ~~l~~~~i~lvGhS~Gg~ia~~~a~~-~~~~~~v~~~~~ 526 (563)
+.++..+++++||||||.+++.+|.. +..+..++++.+
T Consensus 192 ~~~~~~~~~lvG~S~Gg~~a~~~a~~~~~~v~~lv~~~~ 230 (371)
T PRK14875 192 DALGIERAHLVGHSMGGAVALRLAARAPQRVASLTLIAP 230 (371)
T ss_pred HhcCCccEEEEeechHHHHHHHHHHhCchheeEEEEECc
Confidence 99998999999999999999998876 666666666554
No 44
>TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase. This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase.
Probab=99.50 E-value=1.6e-13 Score=133.53 Aligned_cols=99 Identities=23% Similarity=0.236 Sum_probs=86.0
Q ss_pred CCeEEEECCCCCChHHHHHHHHHHhhCCCEEEEEcCCCCCCCCCCC--cCCCHHHHHHH-HHHHHHHhCCCcEEEEEech
Q 008512 427 GPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPN--IVYTELMWSEL-LRDFTVEVVGEPVHLIGNSI 503 (563)
Q Consensus 427 ~~~vlllHG~~~~~~~~~~~~~~l~~~g~~Vi~~D~~G~G~S~~~~--~~~~~~~~~~~-l~~~l~~l~~~~i~lvGhS~ 503 (563)
+|+|||+||++++...|..+++.|+ .||+|+++|+||||.|+.+. ..+++++++++ +..+++.++.++++++||||
T Consensus 1 ~~~vv~~hG~~~~~~~~~~~~~~L~-~~~~v~~~d~~g~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~S~ 79 (251)
T TIGR03695 1 KPVLVFLHGFLGSGADWQALIELLG-PHFRCLAIDLPGHGSSQSPDEIERYDFEEAAQDILATLLDQLGIEPFFLVGYSM 79 (251)
T ss_pred CCEEEEEcCCCCchhhHHHHHHHhc-ccCeEEEEcCCCCCCCCCCCccChhhHHHHHHHHHHHHHHHcCCCeEEEEEecc
Confidence 4789999999999999999999998 59999999999999997653 35678888888 77788888889999999999
Q ss_pred hHHHHHHHHhc-cCcccEEEEEcC
Q 008512 504 GGMFLSTNLTR-GKLYAFLLSVNY 526 (563)
Q Consensus 504 Gg~ia~~~a~~-~~~~~~v~~~~~ 526 (563)
||.+++.++.+ ++.++.+++.++
T Consensus 80 Gg~ia~~~a~~~~~~v~~lil~~~ 103 (251)
T TIGR03695 80 GGRIALYYALQYPERVQGLILESG 103 (251)
T ss_pred HHHHHHHHHHhCchheeeeEEecC
Confidence 99999999887 777777766654
No 45
>KOG4409 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=99.48 E-value=3e-13 Score=135.51 Aligned_cols=103 Identities=29% Similarity=0.433 Sum_probs=90.4
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHHhhCCCEEEEEcCCCCCCCCCCCcC----CCHHHHHHHHHHHHHHhCCCcEEEEEe
Q 008512 426 EGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNIV----YTELMWSELLRDFTVEVVGEPVHLIGN 501 (563)
Q Consensus 426 ~~~~vlllHG~~~~~~~~~~~~~~l~~~g~~Vi~~D~~G~G~S~~~~~~----~~~~~~~~~l~~~l~~l~~~~i~lvGh 501 (563)
.+.++|||||+|+....|....+.|++ ..+|+++|++|+|.|+++... .....+++-+++.....++.+.+|+||
T Consensus 89 ~~~plVliHGyGAg~g~f~~Nf~~La~-~~~vyaiDllG~G~SSRP~F~~d~~~~e~~fvesiE~WR~~~~L~KmilvGH 167 (365)
T KOG4409|consen 89 NKTPLVLIHGYGAGLGLFFRNFDDLAK-IRNVYAIDLLGFGRSSRPKFSIDPTTAEKEFVESIEQWRKKMGLEKMILVGH 167 (365)
T ss_pred CCCcEEEEeccchhHHHHHHhhhhhhh-cCceEEecccCCCCCCCCCCCCCcccchHHHHHHHHHHHHHcCCcceeEeec
Confidence 367999999999999999999999999 799999999999999987532 234578888888889999999999999
Q ss_pred chhHHHHHHHHhc-cCcccEEEEEcCcCC
Q 008512 502 SIGGMFLSTNLTR-GKLYAFLLSVNYLLS 529 (563)
Q Consensus 502 S~Gg~ia~~~a~~-~~~~~~v~~~~~~~~ 529 (563)
||||+++..||.. |+.+..++++++...
T Consensus 168 SfGGYLaa~YAlKyPerV~kLiLvsP~Gf 196 (365)
T KOG4409|consen 168 SFGGYLAAKYALKYPERVEKLILVSPWGF 196 (365)
T ss_pred cchHHHHHHHHHhChHhhceEEEeccccc
Confidence 9999999999988 888888888777443
No 46
>PRK07581 hypothetical protein; Validated
Probab=99.48 E-value=1.1e-13 Score=144.41 Aligned_cols=117 Identities=15% Similarity=0.088 Sum_probs=86.5
Q ss_pred EECCeEEEEEEeCCC----CCeEEEECCCCCChHHHHHHH---HHHhhCCCEEEEEcCCCCCCCCCCCc---CCCHH---
Q 008512 412 RWNGYQIQYTVAGKE----GPAILLVHGFGAFLEHYRDNI---YDIADGGNRVWAITLLGFGRSEKPNI---VYTEL--- 478 (563)
Q Consensus 412 ~~~g~~l~y~~~g~~----~~~vlllHG~~~~~~~~~~~~---~~l~~~g~~Vi~~D~~G~G~S~~~~~---~~~~~--- 478 (563)
+.+|.+++|...|+. .++||++||++++...|..++ +.|...+|+|+++|+||||.|+.+.. .++++
T Consensus 22 ~~~~~~l~y~~~G~~~~~~~~~vll~~~~~~~~~~~~~~~~~~~~l~~~~~~vi~~D~~G~G~S~~~~~~~~~~~~~~~~ 101 (339)
T PRK07581 22 TLPDARLAYKTYGTLNAAKDNAILYPTWYSGTHQDNEWLIGPGRALDPEKYFIIIPNMFGNGLSSSPSNTPAPFNAARFP 101 (339)
T ss_pred CcCCceEEEEecCccCCCCCCEEEEeCCCCCCcccchhhccCCCccCcCceEEEEecCCCCCCCCCCCCCCCCCCCCCCC
Confidence 347889999988852 356777777777766665443 36665589999999999999975432 23332
Q ss_pred --HHHHHHHH----HHHHhCCCc-EEEEEechhHHHHHHHHhc-cCcccEEEEEcCcC
Q 008512 479 --MWSELLRD----FTVEVVGEP-VHLIGNSIGGMFLSTNLTR-GKLYAFLLSVNYLL 528 (563)
Q Consensus 479 --~~~~~l~~----~l~~l~~~~-i~lvGhS~Gg~ia~~~a~~-~~~~~~v~~~~~~~ 528 (563)
.+++++.+ +++++++++ ++|+||||||++++.+|.+ |+.++.++++....
T Consensus 102 ~~~~~~~~~~~~~~l~~~lgi~~~~~lvG~S~GG~va~~~a~~~P~~V~~Lvli~~~~ 159 (339)
T PRK07581 102 HVTIYDNVRAQHRLLTEKFGIERLALVVGWSMGAQQTYHWAVRYPDMVERAAPIAGTA 159 (339)
T ss_pred ceeHHHHHHHHHHHHHHHhCCCceEEEEEeCHHHHHHHHHHHHCHHHHhhheeeecCC
Confidence 24555554 678899999 4799999999999999987 88888887775543
No 47
>PLN02894 hydrolase, alpha/beta fold family protein
Probab=99.47 E-value=9.5e-13 Score=140.35 Aligned_cols=109 Identities=23% Similarity=0.377 Sum_probs=86.2
Q ss_pred EEEEEEeC--CCCCeEEEECCCCCChHHHHHHHHHHhhCCCEEEEEcCCCCCCCCCCCcCC-CH----HHHHHHHHHHHH
Q 008512 417 QIQYTVAG--KEGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNIVY-TE----LMWSELLRDFTV 489 (563)
Q Consensus 417 ~l~y~~~g--~~~~~vlllHG~~~~~~~~~~~~~~l~~~g~~Vi~~D~~G~G~S~~~~~~~-~~----~~~~~~l~~~l~ 489 (563)
.+.+..+. .++|+|||+||++++...|...++.|.+ +|+|+++|+||||.|+.+...+ +. +.+++++.++++
T Consensus 93 ~~~~~~~~~~~~~p~vvllHG~~~~~~~~~~~~~~L~~-~~~vi~~D~rG~G~S~~~~~~~~~~~~~~~~~~~~i~~~~~ 171 (402)
T PLN02894 93 FINTVTFDSKEDAPTLVMVHGYGASQGFFFRNFDALAS-RFRVIAIDQLGWGGSSRPDFTCKSTEETEAWFIDSFEEWRK 171 (402)
T ss_pred eEEEEEecCCCCCCEEEEECCCCcchhHHHHHHHHHHh-CCEEEEECCCCCCCCCCCCcccccHHHHHHHHHHHHHHHHH
Confidence 44444443 2468999999999999999888899887 6999999999999997654322 21 235667778888
Q ss_pred HhCCCcEEEEEechhHHHHHHHHhc-cCcccEEEEEcC
Q 008512 490 EVVGEPVHLIGNSIGGMFLSTNLTR-GKLYAFLLSVNY 526 (563)
Q Consensus 490 ~l~~~~i~lvGhS~Gg~ia~~~a~~-~~~~~~v~~~~~ 526 (563)
.++.++++|+||||||++++.++.+ ++.++.++++++
T Consensus 172 ~l~~~~~~lvGhS~GG~la~~~a~~~p~~v~~lvl~~p 209 (402)
T PLN02894 172 AKNLSNFILLGHSFGGYVAAKYALKHPEHVQHLILVGP 209 (402)
T ss_pred HcCCCCeEEEEECHHHHHHHHHHHhCchhhcEEEEECC
Confidence 8888999999999999999999887 777777777654
No 48
>PRK00175 metX homoserine O-acetyltransferase; Provisional
Probab=99.46 E-value=4.4e-13 Score=142.02 Aligned_cols=117 Identities=17% Similarity=0.141 Sum_probs=93.3
Q ss_pred ECCeEEEEEEeCC----CCCeEEEECCCCCChHH-------------HHHHHH---HHhhCCCEEEEEcCCCC-CCCCCC
Q 008512 413 WNGYQIQYTVAGK----EGPAILLVHGFGAFLEH-------------YRDNIY---DIADGGNRVWAITLLGF-GRSEKP 471 (563)
Q Consensus 413 ~~g~~l~y~~~g~----~~~~vlllHG~~~~~~~-------------~~~~~~---~l~~~g~~Vi~~D~~G~-G~S~~~ 471 (563)
++|.+++|..+|. .+|+|||+||++++... |..++. .|...+|+|+++|++|+ |.|+++
T Consensus 30 ~~~~~~~y~~~G~~~~~~~p~vvl~HG~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~l~~~~~~vi~~Dl~G~~~~s~~~ 109 (379)
T PRK00175 30 LPPVELAYETYGTLNADRSNAVLICHALTGDHHVAGPHSPDDPKPGWWDNMVGPGKPIDTDRYFVICSNVLGGCKGSTGP 109 (379)
T ss_pred cCCceEEEEeccccCCCCCCEEEEeCCcCCchhhcccccccCCCCcchhhccCCCCccCccceEEEeccCCCCCCCCCCC
Confidence 4778899999884 26899999999999875 555542 34345899999999993 444332
Q ss_pred C--------------cCCCHHHHHHHHHHHHHHhCCCc-EEEEEechhHHHHHHHHhc-cCcccEEEEEcCcCC
Q 008512 472 N--------------IVYTELMWSELLRDFTVEVVGEP-VHLIGNSIGGMFLSTNLTR-GKLYAFLLSVNYLLS 529 (563)
Q Consensus 472 ~--------------~~~~~~~~~~~l~~~l~~l~~~~-i~lvGhS~Gg~ia~~~a~~-~~~~~~v~~~~~~~~ 529 (563)
. ..++++++++++.+++++++.++ ++++||||||++++.+|.+ |+.++.+++++....
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~ 183 (379)
T PRK00175 110 SSINPDTGKPYGSDFPVITIRDWVRAQARLLDALGITRLAAVVGGSMGGMQALEWAIDYPDRVRSALVIASSAR 183 (379)
T ss_pred CCCCCCCCCcccCCCCcCCHHHHHHHHHHHHHHhCCCCceEEEEECHHHHHHHHHHHhChHhhhEEEEECCCcc
Confidence 1 15789999999999999999999 5999999999999999887 888888888776543
No 49
>TIGR01738 bioH putative pimeloyl-BioC--CoA transferase BioH. This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam model pfam00561). Members of this family are restricted to the Proteobacteria.
Probab=99.45 E-value=3.7e-13 Score=131.11 Aligned_cols=94 Identities=20% Similarity=0.241 Sum_probs=77.9
Q ss_pred CCeEEEECCCCCChHHHHHHHHHHhhCCCEEEEEcCCCCCCCCCCCcCCCHHHHHHHHHHHHHHhCCCcEEEEEechhHH
Q 008512 427 GPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFTVEVVGEPVHLIGNSIGGM 506 (563)
Q Consensus 427 ~~~vlllHG~~~~~~~~~~~~~~l~~~g~~Vi~~D~~G~G~S~~~~~~~~~~~~~~~l~~~l~~l~~~~i~lvGhS~Gg~ 506 (563)
.++|||+||++++...|..+++.|.+ +|+|+++|+||||.|.... .++++++++++.+.+ .++++++||||||.
T Consensus 4 ~~~iv~~HG~~~~~~~~~~~~~~l~~-~~~vi~~d~~G~G~s~~~~-~~~~~~~~~~~~~~~----~~~~~lvG~S~Gg~ 77 (245)
T TIGR01738 4 NVHLVLIHGWGMNAEVFRCLDEELSA-HFTLHLVDLPGHGRSRGFG-PLSLADAAEAIAAQA----PDPAIWLGWSLGGL 77 (245)
T ss_pred CceEEEEcCCCCchhhHHHHHHhhcc-CeEEEEecCCcCccCCCCC-CcCHHHHHHHHHHhC----CCCeEEEEEcHHHH
Confidence 47899999999999999999999986 7999999999999986543 467777777665543 37999999999999
Q ss_pred HHHHHHhc-cCcccEEEEEcC
Q 008512 507 FLSTNLTR-GKLYAFLLSVNY 526 (563)
Q Consensus 507 ia~~~a~~-~~~~~~v~~~~~ 526 (563)
+++.++.+ |+.+..++++.+
T Consensus 78 ~a~~~a~~~p~~v~~~il~~~ 98 (245)
T TIGR01738 78 VALHIAATHPDRVRALVTVAS 98 (245)
T ss_pred HHHHHHHHCHHhhheeeEecC
Confidence 99999887 776777666543
No 50
>KOG2564 consensus Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]
Probab=99.42 E-value=2.9e-12 Score=124.01 Aligned_cols=98 Identities=22% Similarity=0.300 Sum_probs=81.9
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHHhhC-CCEEEEEcCCCCCCCCCCC-cCCCHHHHHHHHHHHHHHhC---CCcEEEEE
Q 008512 426 EGPAILLVHGFGAFLEHYRDNIYDIADG-GNRVWAITLLGFGRSEKPN-IVYTELMWSELLRDFTVEVV---GEPVHLIG 500 (563)
Q Consensus 426 ~~~~vlllHG~~~~~~~~~~~~~~l~~~-g~~Vi~~D~~G~G~S~~~~-~~~~~~~~~~~l~~~l~~l~---~~~i~lvG 500 (563)
.+|.++++||.+.+...|..++..+... ..+|+++|+||||+|.-++ .+.+.+.+++|+.++++++- ..+|+|+|
T Consensus 73 ~gpil~l~HG~G~S~LSfA~~a~el~s~~~~r~~a~DlRgHGeTk~~~e~dlS~eT~~KD~~~~i~~~fge~~~~iilVG 152 (343)
T KOG2564|consen 73 EGPILLLLHGGGSSALSFAIFASELKSKIRCRCLALDLRGHGETKVENEDDLSLETMSKDFGAVIKELFGELPPQIILVG 152 (343)
T ss_pred CccEEEEeecCcccchhHHHHHHHHHhhcceeEEEeeccccCccccCChhhcCHHHHHHHHHHHHHHHhccCCCceEEEe
Confidence 5889999999999999999999888753 5788999999999997644 57899999999999999874 37899999
Q ss_pred echhHHHHHHHHhc---cCcccEEEE
Q 008512 501 NSIGGMFLSTNLTR---GKLYAFLLS 523 (563)
Q Consensus 501 hS~Gg~ia~~~a~~---~~~~~~v~~ 523 (563)
|||||.+|...|.. |.+.+.+++
T Consensus 153 HSmGGaIav~~a~~k~lpsl~Gl~vi 178 (343)
T KOG2564|consen 153 HSMGGAIAVHTAASKTLPSLAGLVVI 178 (343)
T ss_pred ccccchhhhhhhhhhhchhhhceEEE
Confidence 99999999887754 665444443
No 51
>TIGR01607 PST-A Plasmodium subtelomeric family (PST-A). These genes are preferentially located in the subtelomeric regions of the chromosomes of both P. falciparum and P. yoelii.
Probab=99.42 E-value=9.8e-13 Score=136.79 Aligned_cols=102 Identities=20% Similarity=0.232 Sum_probs=82.3
Q ss_pred ECCeEEEEEEeCCC--CCeEEEECCCCCChH-HH-------------------------HHHHHHHhhCCCEEEEEcCCC
Q 008512 413 WNGYQIQYTVAGKE--GPAILLVHGFGAFLE-HY-------------------------RDNIYDIADGGNRVWAITLLG 464 (563)
Q Consensus 413 ~~g~~l~y~~~g~~--~~~vlllHG~~~~~~-~~-------------------------~~~~~~l~~~g~~Vi~~D~~G 464 (563)
.+|.+|++..|.++ +.+|+++||++++.. .| ..+++.|.+.||.|+++|+||
T Consensus 5 ~~g~~l~~~~~~~~~~kg~v~i~HG~~eh~~~~~~~~~~~~~~~~~~~~~~~~ry~~y~~~~~~~l~~~G~~V~~~D~rG 84 (332)
T TIGR01607 5 KDGLLLKTYSWIVKNAIGIIVLIHGLKSHLRLQFLKINAKIVNNDRAVLIDTDNYYIYKDSWIENFNKNGYSVYGLDLQG 84 (332)
T ss_pred CCCCeEEEeeeeccCCeEEEEEECCCchhhhhhhhhcCcccCCCCeeEEEcCCcceEeeHHHHHHHHHCCCcEEEecccc
Confidence 47888888887643 458999999999886 22 367899999999999999999
Q ss_pred CCCCCCCC--c--CCCHHHHHHHHHHHHHHhC------------------------CCcEEEEEechhHHHHHHHHhc
Q 008512 465 FGRSEKPN--I--VYTELMWSELLRDFTVEVV------------------------GEPVHLIGNSIGGMFLSTNLTR 514 (563)
Q Consensus 465 ~G~S~~~~--~--~~~~~~~~~~l~~~l~~l~------------------------~~~i~lvGhS~Gg~ia~~~a~~ 514 (563)
||.|.+.. . ..+++++++|+..+++.+. ..|++|+||||||.+++.++..
T Consensus 85 HG~S~~~~~~~g~~~~~~~~v~Dl~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~GhSmGg~i~~~~~~~ 162 (332)
T TIGR01607 85 HGESDGLQNLRGHINCFDDLVYDVIQYMNRINDSIILENETKSDDESYDIVNTKENRLPMYIIGLSMGGNIALRLLEL 162 (332)
T ss_pred cCCCccccccccchhhHHHHHHHHHHHHHHhhhhhccccccccccccccccccccCCCceeEeeccCccHHHHHHHHH
Confidence 99998642 1 1478889999998887642 3579999999999999998753
No 52
>COG1647 Esterase/lipase [General function prediction only]
Probab=99.41 E-value=1.1e-12 Score=123.46 Aligned_cols=102 Identities=21% Similarity=0.200 Sum_probs=86.6
Q ss_pred CCeEEEECCCCCChHHHHHHHHHHhhCCCEEEEEcCCCCCCCCCCCcCCCHHHHHHHHHHHHHHhC---CCcEEEEEech
Q 008512 427 GPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFTVEVV---GEPVHLIGNSI 503 (563)
Q Consensus 427 ~~~vlllHG~~~~~~~~~~~~~~l~~~g~~Vi~~D~~G~G~S~~~~~~~~~~~~~~~l~~~l~~l~---~~~i~lvGhS~ 503 (563)
+..||||||+.|+..+.+.+.+.|..+||.|+++.+||||.....-...+.++|-+++.+..+.+. ...|.++|.||
T Consensus 15 ~~AVLllHGFTGt~~Dvr~Lgr~L~e~GyTv~aP~ypGHG~~~e~fl~t~~~DW~~~v~d~Y~~L~~~gy~eI~v~GlSm 94 (243)
T COG1647 15 NRAVLLLHGFTGTPRDVRMLGRYLNENGYTVYAPRYPGHGTLPEDFLKTTPRDWWEDVEDGYRDLKEAGYDEIAVVGLSM 94 (243)
T ss_pred CEEEEEEeccCCCcHHHHHHHHHHHHCCceEecCCCCCCCCCHHHHhcCCHHHHHHHHHHHHHHHHHcCCCeEEEEeecc
Confidence 478999999999999999999999999999999999999987555567889999999988777664 58999999999
Q ss_pred hHHHHHHHHhccCcccEEEEEcCcC
Q 008512 504 GGMFLSTNLTRGKLYAFLLSVNYLL 528 (563)
Q Consensus 504 Gg~ia~~~a~~~~~~~~v~~~~~~~ 528 (563)
||.+++.+|.+-...+.+.+..++.
T Consensus 95 GGv~alkla~~~p~K~iv~m~a~~~ 119 (243)
T COG1647 95 GGVFALKLAYHYPPKKIVPMCAPVN 119 (243)
T ss_pred hhHHHHHHHhhCCccceeeecCCcc
Confidence 9999999999844555555555543
No 53
>cd00707 Pancreat_lipase_like Pancreatic lipase-like enzymes. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=99.40 E-value=5.5e-13 Score=134.81 Aligned_cols=148 Identities=16% Similarity=0.141 Sum_probs=103.4
Q ss_pred CeEEEEEEeCCCCCeEEEECCCCCCh-HHHH-HHHHHHh-hCCCEEEEEcCCCCCCCCCCCcCCCHHHHHHHHHHHHHHh
Q 008512 415 GYQIQYTVAGKEGPAILLVHGFGAFL-EHYR-DNIYDIA-DGGNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFTVEV 491 (563)
Q Consensus 415 g~~l~y~~~g~~~~~vlllHG~~~~~-~~~~-~~~~~l~-~~g~~Vi~~D~~G~G~S~~~~~~~~~~~~~~~l~~~l~~l 491 (563)
+..+.+....+.+|++|+|||+.++. ..|. .+...+. ..+|+|+++|++|++.+..+....+...+.+++..+++.+
T Consensus 24 ~~~~~~~~f~~~~p~vilIHG~~~~~~~~~~~~l~~~ll~~~~~nVi~vD~~~~~~~~y~~a~~~~~~v~~~la~~l~~L 103 (275)
T cd00707 24 PSSLKNSNFNPSRPTRFIIHGWTSSGEESWISDLRKAYLSRGDYNVIVVDWGRGANPNYPQAVNNTRVVGAELAKFLDFL 103 (275)
T ss_pred hhhhhhcCCCCCCCcEEEEcCCCCCCCCcHHHHHHHHHHhcCCCEEEEEECccccccChHHHHHhHHHHHHHHHHHHHHH
Confidence 44566666666789999999999887 5665 4454444 4579999999999854332222234444445555555443
Q ss_pred ------CCCcEEEEEechhHHHHHHHHhc-cCcccEEEEEcCcCC---------------------------------hH
Q 008512 492 ------VGEPVHLIGNSIGGMFLSTNLTR-GKLYAFLLSVNYLLS---------------------------------RS 531 (563)
Q Consensus 492 ------~~~~i~lvGhS~Gg~ia~~~a~~-~~~~~~v~~~~~~~~---------------------------------~~ 531 (563)
..++++|+||||||+++..++.. ++.++.++.+++..+ +.
T Consensus 104 ~~~~g~~~~~i~lIGhSlGa~vAg~~a~~~~~~v~~iv~LDPa~p~f~~~~~~~rl~~~dA~~V~vihT~~~~~G~~~~~ 183 (275)
T cd00707 104 VDNTGLSLENVHLIGHSLGAHVAGFAGKRLNGKLGRITGLDPAGPLFSGADPEDRLDPSDAQFVDVIHTDGGLLGFSQPI 183 (275)
T ss_pred HHhcCCChHHEEEEEecHHHHHHHHHHHHhcCccceeEEecCCcccccCCCcccccCCCCCCeEEEEEeCCCCCCccccc
Confidence 34789999999999999999887 666777776544221 12
Q ss_pred HHHHHhhhcCCCCCCCCCC------ccchhhhhhhcc
Q 008512 532 IICRLFCCHCCLSLACGGQ------VCCPYQQCWQCY 562 (563)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~ 562 (563)
.-.+.+.|.|..|++|... ..|.|...|.||
T Consensus 184 gh~dfypngg~~QpgC~~~~~~~~~~~CsH~ra~~~~ 220 (275)
T cd00707 184 GHADFYPNGGRDQPGCPKDILSSDFVACSHQRAVHYF 220 (275)
T ss_pred cceEeccCCCCCCCCCCCccccccccccchHHHHHHH
Confidence 2235567788899999974 599999999988
No 54
>PRK13604 luxD acyl transferase; Provisional
Probab=99.39 E-value=4.7e-12 Score=127.87 Aligned_cols=116 Identities=17% Similarity=0.139 Sum_probs=86.4
Q ss_pred ECCeEEEEEEeCC------CCCeEEEECCCCCChHHHHHHHHHHhhCCCEEEEEcCCCC-CCCCCCCcCCCHHHHHHHHH
Q 008512 413 WNGYQIQYTVAGK------EGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGF-GRSEKPNIVYTELMWSELLR 485 (563)
Q Consensus 413 ~~g~~l~y~~~g~------~~~~vlllHG~~~~~~~~~~~~~~l~~~g~~Vi~~D~~G~-G~S~~~~~~~~~~~~~~~l~ 485 (563)
.+|.+|..+...+ +.++||++||++++...|..+++.|+++||.|+.||++|| |.|++.....+......|+.
T Consensus 17 ~dG~~L~Gwl~~P~~~~~~~~~~vIi~HGf~~~~~~~~~~A~~La~~G~~vLrfD~rg~~GeS~G~~~~~t~s~g~~Dl~ 96 (307)
T PRK13604 17 ENGQSIRVWETLPKENSPKKNNTILIASGFARRMDHFAGLAEYLSSNGFHVIRYDSLHHVGLSSGTIDEFTMSIGKNSLL 96 (307)
T ss_pred CCCCEEEEEEEcCcccCCCCCCEEEEeCCCCCChHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCccccCcccccHHHHH
Confidence 3677777654433 2368999999999988899999999999999999999998 99987653444333455665
Q ss_pred HHHHHh---CCCcEEEEEechhHHHHHHHHhccCcccEEEEEcCcCC
Q 008512 486 DFTVEV---VGEPVHLIGNSIGGMFLSTNLTRGKLYAFLLSVNYLLS 529 (563)
Q Consensus 486 ~~l~~l---~~~~i~lvGhS~Gg~ia~~~a~~~~~~~~v~~~~~~~~ 529 (563)
.+++.+ ...++.|+||||||.+++..|...+ ++.+++..++..
T Consensus 97 aaid~lk~~~~~~I~LiG~SmGgava~~~A~~~~-v~~lI~~sp~~~ 142 (307)
T PRK13604 97 TVVDWLNTRGINNLGLIAASLSARIAYEVINEID-LSFLITAVGVVN 142 (307)
T ss_pred HHHHHHHhcCCCceEEEEECHHHHHHHHHhcCCC-CCEEEEcCCccc
Confidence 555444 4578999999999999977777654 565666555544
No 55
>TIGR03230 lipo_lipase lipoprotein lipase. Members of this protein family are lipoprotein lipase (EC 3.1.1.34), a eukaryotic triacylglycerol lipase active in plasma and similar to pancreatic and hepatic triacylglycerol lipases (EC 3.1.1.3). It is also called clearing factor. It cleaves chylomicron and VLDL triacylglycerols; it also has phospholipase A-1 activity.
Probab=99.36 E-value=4.7e-12 Score=134.20 Aligned_cols=141 Identities=13% Similarity=0.150 Sum_probs=102.0
Q ss_pred EeCCCCCeEEEECCCCCC--hHHHHH-HHHHHhh--CCCEEEEEcCCCCCCCCCCCcCCCHHHHHHHHHHHHHHh-----
Q 008512 422 VAGKEGPAILLVHGFGAF--LEHYRD-NIYDIAD--GGNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFTVEV----- 491 (563)
Q Consensus 422 ~~g~~~~~vlllHG~~~~--~~~~~~-~~~~l~~--~g~~Vi~~D~~G~G~S~~~~~~~~~~~~~~~l~~~l~~l----- 491 (563)
...+.+|++|+|||++++ ...|.. +++.|.. .+|+|+++|++|+|.|..+........+++++.++++.+
T Consensus 36 ~Fn~~~ptvIlIHG~~~s~~~~~w~~~l~~al~~~~~d~nVI~VDw~g~g~s~y~~a~~~t~~vg~~la~lI~~L~~~~g 115 (442)
T TIGR03230 36 NFNHETKTFIVIHGWTVTGMFESWVPKLVAALYEREPSANVIVVDWLSRAQQHYPTSAAYTKLVGKDVAKFVNWMQEEFN 115 (442)
T ss_pred CcCCCCCeEEEECCCCcCCcchhhHHHHHHHHHhccCCCEEEEEECCCcCCCCCccccccHHHHHHHHHHHHHHHHHhhC
Confidence 344568899999999865 355664 5665542 269999999999998876543333455666666666654
Q ss_pred -CCCcEEEEEechhHHHHHHHHhc-cCcccEEEEEcCcCC--------------------------------------hH
Q 008512 492 -VGEPVHLIGNSIGGMFLSTNLTR-GKLYAFLLSVNYLLS--------------------------------------RS 531 (563)
Q Consensus 492 -~~~~i~lvGhS~Gg~ia~~~a~~-~~~~~~v~~~~~~~~--------------------------------------~~ 531 (563)
..++++|+||||||++|..++.. +..++.|+.+++..+ ..
T Consensus 116 l~l~~VhLIGHSLGAhIAg~ag~~~p~rV~rItgLDPAgP~F~~~~~~~rLd~~DA~fVdVIHTd~~~~~~~~lG~~~pi 195 (442)
T TIGR03230 116 YPWDNVHLLGYSLGAHVAGIAGSLTKHKVNRITGLDPAGPTFEYADAPSTLSPDDADFVDVLHTNTRGSPDRSIGIQRPV 195 (442)
T ss_pred CCCCcEEEEEECHHHHHHHHHHHhCCcceeEEEEEcCCCCcccccccccccCCCCCCeEEEEEecCCccccccccccccc
Confidence 35899999999999999998876 666777776554322 11
Q ss_pred HHHHHhhhcCCCCCCCCCC-----------------ccchhhhhhhcc
Q 008512 532 IICRLFCCHCCLSLACGGQ-----------------VCCPYQQCWQCY 562 (563)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~ 562 (563)
...+.+.|.|..+|+|... +.|.|+.-|.||
T Consensus 196 Gh~DFYPNGG~~QPGC~~~~~~~~~~~~~~~~~~~~~~CsH~Ra~~~f 243 (442)
T TIGR03230 196 GHIDIYPNGGTFQPGCDIQETLLVIAEKGLGNMDQLVKCSHERSIHLF 243 (442)
T ss_pred cceEeccCCCCCCCCCCccccccccccccccccCcCccchhHHHHHHH
Confidence 2235577889999999753 489999999988
No 56
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=99.36 E-value=5.9e-12 Score=154.39 Aligned_cols=121 Identities=23% Similarity=0.283 Sum_probs=97.6
Q ss_pred CeeEEEEEEC--Ce--EEEEEEeCC--CCCeEEEECCCCCChHHHHHHHHHHhhCCCEEEEEcCCCCCCCCCCC------
Q 008512 405 VYSTRIWRWN--GY--QIQYTVAGK--EGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPN------ 472 (563)
Q Consensus 405 ~~~~~~~~~~--g~--~l~y~~~g~--~~~~vlllHG~~~~~~~~~~~~~~l~~~g~~Vi~~D~~G~G~S~~~~------ 472 (563)
+.....+.++ |. .++|...|. .+++|||+||++++...|..+++.|.+ +|+|+++|+||||.|....
T Consensus 1343 ~l~~~~~~v~~~~~~~~i~~~~~G~~~~~~~vVllHG~~~s~~~w~~~~~~L~~-~~rVi~~Dl~G~G~S~~~~~~~~~~ 1421 (1655)
T PLN02980 1343 QVRTYELRVDVDGFSCLIKVHEVGQNAEGSVVLFLHGFLGTGEDWIPIMKAISG-SARCISIDLPGHGGSKIQNHAKETQ 1421 (1655)
T ss_pred CCceEEEEEccCceEEEEEEEecCCCCCCCeEEEECCCCCCHHHHHHHHHHHhC-CCEEEEEcCCCCCCCCCcccccccc
Confidence 3444444444 32 244555564 367999999999999999999999977 6999999999999997532
Q ss_pred --cCCCHHHHHHHHHHHHHHhCCCcEEEEEechhHHHHHHHHhc-cCcccEEEEEcC
Q 008512 473 --IVYTELMWSELLRDFTVEVVGEPVHLIGNSIGGMFLSTNLTR-GKLYAFLLSVNY 526 (563)
Q Consensus 473 --~~~~~~~~~~~l~~~l~~l~~~~i~lvGhS~Gg~ia~~~a~~-~~~~~~v~~~~~ 526 (563)
..++++++++++..++++++.++++|+||||||.+++.++.+ |+.++.++++.+
T Consensus 1422 ~~~~~si~~~a~~l~~ll~~l~~~~v~LvGhSmGG~iAl~~A~~~P~~V~~lVlis~ 1478 (1655)
T PLN02980 1422 TEPTLSVELVADLLYKLIEHITPGKVTLVGYSMGARIALYMALRFSDKIEGAVIISG 1478 (1655)
T ss_pred ccccCCHHHHHHHHHHHHHHhCCCCEEEEEECHHHHHHHHHHHhChHhhCEEEEECC
Confidence 256899999999999999999999999999999999999887 777777777654
No 57
>TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily.
Probab=99.35 E-value=2.6e-11 Score=122.65 Aligned_cols=100 Identities=15% Similarity=-0.016 Sum_probs=78.4
Q ss_pred CCeEEEECCCCC----ChHHHHHHHHHHhhCCCEEEEEcCCCCCCCCCCCcCCCHHHHHHHHHHHHHHh-----CCCcEE
Q 008512 427 GPAILLVHGFGA----FLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFTVEV-----VGEPVH 497 (563)
Q Consensus 427 ~~~vlllHG~~~----~~~~~~~~~~~l~~~g~~Vi~~D~~G~G~S~~~~~~~~~~~~~~~l~~~l~~l-----~~~~i~ 497 (563)
++.||++||+++ +...|..+++.|++.||.|+++|++|||.|.+.. .+++++.+|+.++++.+ +.++++
T Consensus 26 ~~~vv~i~gg~~~~~g~~~~~~~la~~l~~~G~~v~~~Dl~G~G~S~~~~--~~~~~~~~d~~~~~~~l~~~~~g~~~i~ 103 (274)
T TIGR03100 26 TTGVLIVVGGPQYRVGSHRQFVLLARRLAEAGFPVLRFDYRGMGDSEGEN--LGFEGIDADIAAAIDAFREAAPHLRRIV 103 (274)
T ss_pred CCeEEEEeCCccccCCchhHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCC--CCHHHHHHHHHHHHHHHHhhCCCCCcEE
Confidence 567888888653 3445678899999999999999999999987543 46667778888877766 447799
Q ss_pred EEEechhHHHHHHHHhccCcccEEEEEcCcC
Q 008512 498 LIGNSIGGMFLSTNLTRGKLYAFLLSVNYLL 528 (563)
Q Consensus 498 lvGhS~Gg~ia~~~a~~~~~~~~v~~~~~~~ 528 (563)
++||||||.+++.++..+..++.++++++..
T Consensus 104 l~G~S~Gg~~a~~~a~~~~~v~~lil~~p~~ 134 (274)
T TIGR03100 104 AWGLCDAASAALLYAPADLRVAGLVLLNPWV 134 (274)
T ss_pred EEEECHHHHHHHHHhhhCCCccEEEEECCcc
Confidence 9999999999999987755666777766653
No 58
>PLN02511 hydrolase
Probab=99.34 E-value=1.2e-11 Score=131.34 Aligned_cols=102 Identities=22% Similarity=0.285 Sum_probs=74.6
Q ss_pred CCCeEEEECCCCCChH-HH-HHHHHHHhhCCCEEEEEcCCCCCCCCCCCcCCCHHHHHHHHHHHHHHhCC----CcEEEE
Q 008512 426 EGPAILLVHGFGAFLE-HY-RDNIYDIADGGNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFTVEVVG----EPVHLI 499 (563)
Q Consensus 426 ~~~~vlllHG~~~~~~-~~-~~~~~~l~~~g~~Vi~~D~~G~G~S~~~~~~~~~~~~~~~l~~~l~~l~~----~~i~lv 499 (563)
.+|+||++||++++.. .| ..++..+.+.||+|+++|+||||.|......+....+.+|+.++++.+.. .+++++
T Consensus 99 ~~p~vvllHG~~g~s~~~y~~~~~~~~~~~g~~vv~~d~rG~G~s~~~~~~~~~~~~~~Dl~~~i~~l~~~~~~~~~~lv 178 (388)
T PLN02511 99 DAPVLILLPGLTGGSDDSYVRHMLLRARSKGWRVVVFNSRGCADSPVTTPQFYSASFTGDLRQVVDHVAGRYPSANLYAA 178 (388)
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCEEEEEecCCCCCCCCCCcCEEcCCchHHHHHHHHHHHHHCCCCCEEEE
Confidence 4678999999977654 34 46777777789999999999999997543222234456666666666543 689999
Q ss_pred EechhHHHHHHHHhc-cC---cccEEEEEcCc
Q 008512 500 GNSIGGMFLSTNLTR-GK---LYAFLLSVNYL 527 (563)
Q Consensus 500 GhS~Gg~ia~~~a~~-~~---~~~~v~~~~~~ 527 (563)
||||||.+++.++.+ ++ +.+++++.++.
T Consensus 179 G~SlGg~i~~~yl~~~~~~~~v~~~v~is~p~ 210 (388)
T PLN02511 179 GWSLGANILVNYLGEEGENCPLSGAVSLCNPF 210 (388)
T ss_pred EechhHHHHHHHHHhcCCCCCceEEEEECCCc
Confidence 999999999999876 44 34555555443
No 59
>KOG1454 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=99.33 E-value=8.5e-12 Score=128.86 Aligned_cols=97 Identities=37% Similarity=0.536 Sum_probs=86.6
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHHhhC-CCEEEEEcCCCCCCC-CCCC-cCCCHHHHHHHHHHHHHHhCCCcEEEEEec
Q 008512 426 EGPAILLVHGFGAFLEHYRDNIYDIADG-GNRVWAITLLGFGRS-EKPN-IVYTELMWSELLRDFTVEVVGEPVHLIGNS 502 (563)
Q Consensus 426 ~~~~vlllHG~~~~~~~~~~~~~~l~~~-g~~Vi~~D~~G~G~S-~~~~-~~~~~~~~~~~l~~~l~~l~~~~i~lvGhS 502 (563)
.+++||++|||+++...|..++..|.+. |+.|+++|++|||.+ ..+. ..|+..++.+.+..++.+....+++++|||
T Consensus 57 ~~~pvlllHGF~~~~~~w~~~~~~L~~~~~~~v~aiDl~G~g~~s~~~~~~~y~~~~~v~~i~~~~~~~~~~~~~lvghS 136 (326)
T KOG1454|consen 57 DKPPVLLLHGFGASSFSWRRVVPLLSKAKGLRVLAIDLPGHGYSSPLPRGPLYTLRELVELIRRFVKEVFVEPVSLVGHS 136 (326)
T ss_pred CCCcEEEeccccCCcccHhhhccccccccceEEEEEecCCCCcCCCCCCCCceehhHHHHHHHHHHHhhcCcceEEEEeC
Confidence 4789999999999999999999999875 599999999999954 4443 458999999999999999999999999999
Q ss_pred hhHHHHHHHHhc-cCcccEEE
Q 008512 503 IGGMFLSTNLTR-GKLYAFLL 522 (563)
Q Consensus 503 ~Gg~ia~~~a~~-~~~~~~v~ 522 (563)
|||.+++.+|+. |+.+.+++
T Consensus 137 ~Gg~va~~~Aa~~P~~V~~lv 157 (326)
T KOG1454|consen 137 LGGIVALKAAAYYPETVDSLV 157 (326)
T ss_pred cHHHHHHHHHHhCccccccee
Confidence 999999999987 99888888
No 60
>PRK05077 frsA fermentation/respiration switch protein; Reviewed
Probab=99.28 E-value=1.7e-10 Score=123.41 Aligned_cols=115 Identities=15% Similarity=0.079 Sum_probs=81.3
Q ss_pred CCeEEEEEEeC----CCCCeEEEECCCCCCh-HHHHHHHHHHhhCCCEEEEEcCCCCCCCCCCCcCCCHHHHHHHHHHHH
Q 008512 414 NGYQIQYTVAG----KEGPAILLVHGFGAFL-EHYRDNIYDIADGGNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFT 488 (563)
Q Consensus 414 ~g~~l~y~~~g----~~~~~vlllHG~~~~~-~~~~~~~~~l~~~g~~Vi~~D~~G~G~S~~~~~~~~~~~~~~~l~~~l 488 (563)
+|.+|...... .+.|+||++||+.+.. +.|..++..|++.||.|+++|+||||.|.+.....+.......+.+.+
T Consensus 177 ~g~~l~g~l~~P~~~~~~P~Vli~gG~~~~~~~~~~~~~~~La~~Gy~vl~~D~pG~G~s~~~~~~~d~~~~~~avld~l 256 (414)
T PRK05077 177 GGGPITGFLHLPKGDGPFPTVLVCGGLDSLQTDYYRLFRDYLAPRGIAMLTIDMPSVGFSSKWKLTQDSSLLHQAVLNAL 256 (414)
T ss_pred CCcEEEEEEEECCCCCCccEEEEeCCcccchhhhHHHHHHHHHhCCCEEEEECCCCCCCCCCCCccccHHHHHHHHHHHH
Confidence 45466644322 2356777777777664 567788899999999999999999999965432233444445555555
Q ss_pred HHh---CCCcEEEEEechhHHHHHHHHhc-cCcccEEEEEcCcC
Q 008512 489 VEV---VGEPVHLIGNSIGGMFLSTNLTR-GKLYAFLLSVNYLL 528 (563)
Q Consensus 489 ~~l---~~~~i~lvGhS~Gg~ia~~~a~~-~~~~~~v~~~~~~~ 528 (563)
... ...+|.++||||||++++.+|.. ++.++++++..+..
T Consensus 257 ~~~~~vd~~ri~l~G~S~GG~~Al~~A~~~p~ri~a~V~~~~~~ 300 (414)
T PRK05077 257 PNVPWVDHTRVAAFGFRFGANVAVRLAYLEPPRLKAVACLGPVV 300 (414)
T ss_pred HhCcccCcccEEEEEEChHHHHHHHHHHhCCcCceEEEEECCcc
Confidence 544 34789999999999999999876 76777777766543
No 61
>PRK10566 esterase; Provisional
Probab=99.25 E-value=8.9e-11 Score=116.55 Aligned_cols=107 Identities=18% Similarity=0.163 Sum_probs=74.2
Q ss_pred EEEEEeCC---CCCeEEEECCCCCChHHHHHHHHHHhhCCCEEEEEcCCCCCCCCCCCcCCCH-------HHHHHHHHHH
Q 008512 418 IQYTVAGK---EGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNIVYTE-------LMWSELLRDF 487 (563)
Q Consensus 418 l~y~~~g~---~~~~vlllHG~~~~~~~~~~~~~~l~~~g~~Vi~~D~~G~G~S~~~~~~~~~-------~~~~~~l~~~ 487 (563)
++|...+. +.|+||++||++++...|..++..|++.||.|+++|+||||.+........+ ....+++.++
T Consensus 15 ~~~~p~~~~~~~~p~vv~~HG~~~~~~~~~~~~~~l~~~G~~v~~~d~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (249)
T PRK10566 15 LHAFPAGQRDTPLPTVFFYHGFTSSKLVYSYFAVALAQAGFRVIMPDAPMHGARFSGDEARRLNHFWQILLQNMQEFPTL 94 (249)
T ss_pred EEEcCCCCCCCCCCEEEEeCCCCcccchHHHHHHHHHhCCCEEEEecCCcccccCCCccccchhhHHHHHHHHHHHHHHH
Confidence 44554332 2579999999999998999999999999999999999999976332111111 1112333333
Q ss_pred HHHh------CCCcEEEEEechhHHHHHHHHhc-cCcccEEEEE
Q 008512 488 TVEV------VGEPVHLIGNSIGGMFLSTNLTR-GKLYAFLLSV 524 (563)
Q Consensus 488 l~~l------~~~~i~lvGhS~Gg~ia~~~a~~-~~~~~~v~~~ 524 (563)
++.+ ..++++++||||||.+++.++.. +.+...+++.
T Consensus 95 ~~~l~~~~~~~~~~i~v~G~S~Gg~~al~~~~~~~~~~~~~~~~ 138 (249)
T PRK10566 95 RAAIREEGWLLDDRLAVGGASMGGMTALGIMARHPWVKCVASLM 138 (249)
T ss_pred HHHHHhcCCcCccceeEEeecccHHHHHHHHHhCCCeeEEEEee
Confidence 3322 34789999999999999998876 5555444443
No 62
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=99.23 E-value=5.6e-11 Score=96.42 Aligned_cols=75 Identities=27% Similarity=0.365 Sum_probs=65.7
Q ss_pred CeEEEEEEeCCCC---CeEEEECCCCCChHHHHHHHHHHhhCCCEEEEEcCCCCCCCCCCC-cCCCHHHHHHHHHHHHH
Q 008512 415 GYQIQYTVAGKEG---PAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPN-IVYTELMWSELLRDFTV 489 (563)
Q Consensus 415 g~~l~y~~~g~~~---~~vlllHG~~~~~~~~~~~~~~l~~~g~~Vi~~D~~G~G~S~~~~-~~~~~~~~~~~l~~~l~ 489 (563)
|.+|++..|.+++ .+|+++||++.++..|..+++.|++.||.|+++|+||||.|++.. ...+++++++|+..+++
T Consensus 1 G~~L~~~~w~p~~~~k~~v~i~HG~~eh~~ry~~~a~~L~~~G~~V~~~D~rGhG~S~g~rg~~~~~~~~v~D~~~~~~ 79 (79)
T PF12146_consen 1 GTKLFYRRWKPENPPKAVVVIVHGFGEHSGRYAHLAEFLAEQGYAVFAYDHRGHGRSEGKRGHIDSFDDYVDDLHQFIQ 79 (79)
T ss_pred CcEEEEEEecCCCCCCEEEEEeCCcHHHHHHHHHHHHHHHhCCCEEEEECCCcCCCCCCcccccCCHHHHHHHHHHHhC
Confidence 5688898887653 479999999999999999999999999999999999999998755 34588999999998874
No 63
>PRK11071 esterase YqiA; Provisional
Probab=99.23 E-value=7.8e-11 Score=112.57 Aligned_cols=89 Identities=19% Similarity=0.219 Sum_probs=72.0
Q ss_pred CeEEEECCCCCChHHHHH--HHHHHhh--CCCEEEEEcCCCCCCCCCCCcCCCHHHHHHHHHHHHHHhCCCcEEEEEech
Q 008512 428 PAILLVHGFGAFLEHYRD--NIYDIAD--GGNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFTVEVVGEPVHLIGNSI 503 (563)
Q Consensus 428 ~~vlllHG~~~~~~~~~~--~~~~l~~--~g~~Vi~~D~~G~G~S~~~~~~~~~~~~~~~l~~~l~~l~~~~i~lvGhS~ 503 (563)
|+|||+||++++...|.. +.+.+.+ .+|+|+++|+|||| +++++++.+++++++.++++++||||
T Consensus 2 p~illlHGf~ss~~~~~~~~~~~~l~~~~~~~~v~~~dl~g~~-----------~~~~~~l~~l~~~~~~~~~~lvG~S~ 70 (190)
T PRK11071 2 STLLYLHGFNSSPRSAKATLLKNWLAQHHPDIEMIVPQLPPYP-----------ADAAELLESLVLEHGGDPLGLVGSSL 70 (190)
T ss_pred CeEEEECCCCCCcchHHHHHHHHHHHHhCCCCeEEeCCCCCCH-----------HHHHHHHHHHHHHcCCCCeEEEEECH
Confidence 679999999999998873 3456654 37999999999985 36788999999999999999999999
Q ss_pred hHHHHHHHHhccCcccEEEEEcCcC
Q 008512 504 GGMFLSTNLTRGKLYAFLLSVNYLL 528 (563)
Q Consensus 504 Gg~ia~~~a~~~~~~~~v~~~~~~~ 528 (563)
||.+++.+|.+.. .+.+++.++..
T Consensus 71 Gg~~a~~~a~~~~-~~~vl~~~~~~ 94 (190)
T PRK11071 71 GGYYATWLSQCFM-LPAVVVNPAVR 94 (190)
T ss_pred HHHHHHHHHHHcC-CCEEEECCCCC
Confidence 9999999998733 34555544444
No 64
>PRK10985 putative hydrolase; Provisional
Probab=99.22 E-value=2.5e-10 Score=118.39 Aligned_cols=101 Identities=20% Similarity=0.207 Sum_probs=71.3
Q ss_pred CCeEEEECCCCCChH--HHHHHHHHHhhCCCEEEEEcCCCCCCCCCCC-cCC---CHHHHHHHHHHHHHHhCCCcEEEEE
Q 008512 427 GPAILLVHGFGAFLE--HYRDNIYDIADGGNRVWAITLLGFGRSEKPN-IVY---TELMWSELLRDFTVEVVGEPVHLIG 500 (563)
Q Consensus 427 ~~~vlllHG~~~~~~--~~~~~~~~l~~~g~~Vi~~D~~G~G~S~~~~-~~~---~~~~~~~~l~~~l~~l~~~~i~lvG 500 (563)
+|+||++||++++.. .+..++..|.+.||+|+++|+||||.+.... ..+ ..+|+...+..+.+.++..+++++|
T Consensus 58 ~p~vll~HG~~g~~~~~~~~~~~~~l~~~G~~v~~~d~rG~g~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~~~~~~vG 137 (324)
T PRK10985 58 KPRLVLFHGLEGSFNSPYAHGLLEAAQKRGWLGVVMHFRGCSGEPNRLHRIYHSGETEDARFFLRWLQREFGHVPTAAVG 137 (324)
T ss_pred CCEEEEeCCCCCCCcCHHHHHHHHHHHHCCCEEEEEeCCCCCCCccCCcceECCCchHHHHHHHHHHHHhCCCCCEEEEE
Confidence 679999999987643 3456889999999999999999999775431 111 2344444444444556678999999
Q ss_pred echhHHHHHHHHhc--cC--cccEEEEEcCc
Q 008512 501 NSIGGMFLSTNLTR--GK--LYAFLLSVNYL 527 (563)
Q Consensus 501 hS~Gg~ia~~~a~~--~~--~~~~v~~~~~~ 527 (563)
|||||.+++.++.. ++ +.+.+++.++.
T Consensus 138 ~S~GG~i~~~~~~~~~~~~~~~~~v~i~~p~ 168 (324)
T PRK10985 138 YSLGGNMLACLLAKEGDDLPLDAAVIVSAPL 168 (324)
T ss_pred ecchHHHHHHHHHhhCCCCCccEEEEEcCCC
Confidence 99999988877764 22 34445555543
No 65
>TIGR03502 lipase_Pla1_cef extracellular lipase, Pla-1/cef family. Members of this protein family are bacterial lipoproteins largely from the Gammaproteobacteria. Characterized members are expressed in extracellularly and have esterase activity. Members include the lipase Pla-1 from Aeromonas hydrophila (AF092033) and CHO cell elongation factor (cef) from Vibrio hollisae
Probab=99.18 E-value=1.6e-10 Score=129.69 Aligned_cols=111 Identities=19% Similarity=0.126 Sum_probs=89.2
Q ss_pred CCeeEEEEEECCeEEEEEEeCCC----------CCeEEEECCCCCChHHHHHHHHHHhhCCCEEEEEcCCCCCCCCCC--
Q 008512 404 GVYSTRIWRWNGYQIQYTVAGKE----------GPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKP-- 471 (563)
Q Consensus 404 ~~~~~~~~~~~g~~l~y~~~g~~----------~~~vlllHG~~~~~~~~~~~~~~l~~~g~~Vi~~D~~G~G~S~~~-- 471 (563)
...++++...++.++.|...+.+ .|+|||+||++++...|..+++.|++.||+|+++|+||||.|...
T Consensus 416 ~~vp~~~~~p~~~~i~~~~~~~g~~~~~~p~~g~P~VVllHG~~g~~~~~~~lA~~La~~Gy~VIaiDlpGHG~S~~~~~ 495 (792)
T TIGR03502 416 ENVPVLLTTPNGPVIAAFRAGTGLETFAAPTDGWPVVIYQHGITGAKENALAFAGTLAAAGVATIAIDHPLHGARSFDAN 495 (792)
T ss_pred cccceEEEecCcchhhhhhcccccccccCCCCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEeCCCCCCccccccc
Confidence 34566777888888887664432 248999999999999999999999988999999999999999332
Q ss_pred --------C--c-----------CCCHHHHHHHHHHHHHHhC----------------CCcEEEEEechhHHHHHHHHhc
Q 008512 472 --------N--I-----------VYTELMWSELLRDFTVEVV----------------GEPVHLIGNSIGGMFLSTNLTR 514 (563)
Q Consensus 472 --------~--~-----------~~~~~~~~~~l~~~l~~l~----------------~~~i~lvGhS~Gg~ia~~~a~~ 514 (563)
. . ...+.+.+.|+..+...+. ..+++++||||||++++.++..
T Consensus 496 ~~~~~a~~~~~~~y~Nl~~l~~aRDn~rQ~v~Dll~L~~~l~~~~~~~~~~~~~~~~~~~~V~~lGHSLGgiig~~~~~~ 575 (792)
T TIGR03502 496 ASGVNATNANVLAYMNLASLLVARDNLRQSILDLLGLRLSLNGSALAGAPLSGINVIDGSKVSFLGHSLGGIVGTSFIAY 575 (792)
T ss_pred cccccccccCccceeccccccccccCHHHHHHHHHHHHHHHhcccccccccccccCCCCCcEEEEecCHHHHHHHHHHHh
Confidence 1 1 1267788888888877765 3589999999999999999874
No 66
>PF03441 FAD_binding_7: FAD binding domain of DNA photolyase from Prosite.; InterPro: IPR005101 This entry represents a multi-helical domain composed of two all-alpha subdomains that is found as the C-terminal domain in cryptochrome proteins, as well as at the N-terminal of DNA photolyase where it acts as a FAD-binding domain (the N-terminal of DNA photolyase binds a light-harvesting cofactor). Photolyases and cryptochromes are related flavoproteins that bind FAD. Photolyases harness the energy of blue light to repair DNA damage by removing pyrimidine dimers. Cryptochromes (CRY1 and CRY2) are blue light photoreceptors that mediate blue light-induced gene expression [, ]. DNA photolyases are DNA repair enzymes that repair mismatched pyrimidine dimers induced by exposure to ultra-violet light. They bind to UV-damaged DNA containing pyrimidine dimers and, upon absorbing a near-UV photon (300 to 500 nm), they catalyse dimer splitting, breaking the cyclobutane ring joining the two pyrimidines of the dimer so as to split them into the constituent monomers; this process is called photoreactivation. DNA photolyases require two choromophore-cofactors for their activity. All monomers contain a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm [, ].; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 3ZXS_A 1DNP_A 2XRZ_B 2XRY_A 2VTB_A 2J4D_B 2IJG_X 3TVS_A 2E0I_D ....
Probab=99.14 E-value=2.6e-11 Score=122.48 Aligned_cols=59 Identities=27% Similarity=0.407 Sum_probs=49.8
Q ss_pred CChHHHHHHHHHHHHhhcCCccchHHHHHHhhccccCCCCCCCccccCcccccCcCchhHHHHHHHHhhh
Q 008512 292 GGTNAVLNALQAYLRYLEGTVRDDWQELQEKLRNAESRDGASFATLFGPALCLGIISRRGVHYEAIKFEK 361 (563)
Q Consensus 292 gGe~aAl~~L~~fl~~~~~~~l~~Y~~~rn~~r~~~~~p~~~~tS~LSPyL~~G~IS~R~v~~~~~~~~~ 361 (563)
|||++|+++|+.||+ +++..|.+.||. |..++||+|||||+||+||||+|++++.+...
T Consensus 1 GGe~~A~~~L~~Fl~----~~l~~Y~~~r~~-------p~~~~~S~LSpyL~~G~lS~r~v~~~~~~~~~ 59 (277)
T PF03441_consen 1 GGETAALKRLEEFLK----ERLADYGEQRDD-------PAADGTSRLSPYLNFGCLSPREVYRAVKKAQE 59 (277)
T ss_dssp SSHHHHHHHHHHHHH----HCGGGHHHHTT--------TTSTTS---HHHHHTTSS-HHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHH----HHHHhhchhccC-------CCcCCcCcccHHHhCCCcCHHHHHHHHHHHhh
Confidence 899999999999994 789999998874 68889999999999999999999999987765
No 67
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=99.10 E-value=5.5e-10 Score=100.81 Aligned_cols=94 Identities=21% Similarity=0.280 Sum_probs=70.9
Q ss_pred eEEEECCCCCChHHHHHHHHHHhhCCCEEEEEcCCCCCCCCCCCcCCCHHHHHHHHHHHHHHhCCCcEEEEEechhHHHH
Q 008512 429 AILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFTVEVVGEPVHLIGNSIGGMFL 508 (563)
Q Consensus 429 ~vlllHG~~~~~~~~~~~~~~l~~~g~~Vi~~D~~G~G~S~~~~~~~~~~~~~~~l~~~l~~l~~~~i~lvGhS~Gg~ia 508 (563)
+||++||++++...|..+++.|++.||.|+++|+||+|.+.... ...++.+++. -......++.++|||+||.++
T Consensus 1 ~vv~~HG~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~---~~~~~~~~~~--~~~~~~~~i~l~G~S~Gg~~a 75 (145)
T PF12695_consen 1 VVVLLHGWGGSRRDYQPLAEALAEQGYAVVAFDYPGHGDSDGAD---AVERVLADIR--AGYPDPDRIILIGHSMGGAIA 75 (145)
T ss_dssp EEEEECTTTTTTHHHHHHHHHHHHTTEEEEEESCTTSTTSHHSH---HHHHHHHHHH--HHHCTCCEEEEEEETHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEecCCCCccchhH---HHHHHHHHHH--hhcCCCCcEEEEEEccCcHHH
Confidence 58999999999999999999999999999999999999872221 1222222221 112356899999999999999
Q ss_pred HHHHhccCcccEEEEEcCc
Q 008512 509 STNLTRGKLYAFLLSVNYL 527 (563)
Q Consensus 509 ~~~a~~~~~~~~v~~~~~~ 527 (563)
..++.....++.++++.+.
T Consensus 76 ~~~~~~~~~v~~~v~~~~~ 94 (145)
T PF12695_consen 76 ANLAARNPRVKAVVLLSPY 94 (145)
T ss_dssp HHHHHHSTTESEEEEESES
T ss_pred HHHhhhccceeEEEEecCc
Confidence 9998875556666666553
No 68
>COG0596 MhpC Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=99.10 E-value=1.3e-09 Score=105.62 Aligned_cols=113 Identities=27% Similarity=0.355 Sum_probs=87.4
Q ss_pred CCeEEEEEEeCCCCCeEEEECCCCCChHHHHHHHHHHhhC--CCEEEEEcCCCCCCCCCCCcCCCHHHHHHHHHHHHHHh
Q 008512 414 NGYQIQYTVAGKEGPAILLVHGFGAFLEHYRDNIYDIADG--GNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFTVEV 491 (563)
Q Consensus 414 ~g~~l~y~~~g~~~~~vlllHG~~~~~~~~~~~~~~l~~~--g~~Vi~~D~~G~G~S~~~~~~~~~~~~~~~l~~~l~~l 491 (563)
.+..+.|...+..+++|+++||++++...|......+... .|+|+++|+||||.|. .. .+....+++++..+++.+
T Consensus 8 ~~~~~~~~~~~~~~~~i~~~hg~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~g~s~-~~-~~~~~~~~~~~~~~~~~~ 85 (282)
T COG0596 8 DGVRLAYREAGGGGPPLVLLHGFPGSSSVWRPVFKVLPALAARYRVIAPDLRGHGRSD-PA-GYSLSAYADDLAALLDAL 85 (282)
T ss_pred CCeEEEEeecCCCCCeEEEeCCCCCchhhhHHHHHHhhccccceEEEEecccCCCCCC-cc-cccHHHHHHHHHHHHHHh
Confidence 4455666665544669999999999999888744444332 1899999999999997 22 344555589999999999
Q ss_pred CCCcEEEEEechhHHHHHHHHhc-cCcccEEEEEcCcC
Q 008512 492 VGEPVHLIGNSIGGMFLSTNLTR-GKLYAFLLSVNYLL 528 (563)
Q Consensus 492 ~~~~i~lvGhS~Gg~ia~~~a~~-~~~~~~v~~~~~~~ 528 (563)
+..+++++||||||.+++.++.+ ++.++.+++..+..
T Consensus 86 ~~~~~~l~G~S~Gg~~~~~~~~~~p~~~~~~v~~~~~~ 123 (282)
T COG0596 86 GLEKVVLVGHSMGGAVALALALRHPDRVRGLVLIGPAP 123 (282)
T ss_pred CCCceEEEEecccHHHHHHHHHhcchhhheeeEecCCC
Confidence 98889999999999999999987 77777777766543
No 69
>PLN02872 triacylglycerol lipase
Probab=99.07 E-value=4.2e-10 Score=119.21 Aligned_cols=111 Identities=20% Similarity=0.262 Sum_probs=81.0
Q ss_pred eeEEEEE-ECCeEEEEEEeC--------CCCCeEEEECCCCCChHHHH------HHHHHHhhCCCEEEEEcCCCCCCCCC
Q 008512 406 YSTRIWR-WNGYQIQYTVAG--------KEGPAILLVHGFGAFLEHYR------DNIYDIADGGNRVWAITLLGFGRSEK 470 (563)
Q Consensus 406 ~~~~~~~-~~g~~l~y~~~g--------~~~~~vlllHG~~~~~~~~~------~~~~~l~~~g~~Vi~~D~~G~G~S~~ 470 (563)
.+.+.++ -||+.|...... ..+++|||+||++++...|. .++..|+++||+|+++|+||+|.|.+
T Consensus 44 ~e~h~v~T~DGy~L~l~ri~~~~~~~~~~~~~~Vll~HGl~~ss~~w~~~~~~~sla~~La~~GydV~l~n~RG~~~s~g 123 (395)
T PLN02872 44 CTEHTIQTKDGYLLALQRVSSRNPRLGSQRGPPVLLQHGLFMAGDAWFLNSPEQSLGFILADHGFDVWVGNVRGTRWSYG 123 (395)
T ss_pred ceEEEEECCCCcEEEEEEcCCCCCCCCCCCCCeEEEeCcccccccceeecCcccchHHHHHhCCCCcccccccccccccC
Confidence 3444443 477777655432 12578999999998888773 35557888899999999999886643
Q ss_pred C------Cc---CCCHHHHH-HHHHHHHHHh---CCCcEEEEEechhHHHHHHHHhccC
Q 008512 471 P------NI---VYTELMWS-ELLRDFTVEV---VGEPVHLIGNSIGGMFLSTNLTRGK 516 (563)
Q Consensus 471 ~------~~---~~~~~~~~-~~l~~~l~~l---~~~~i~lvGhS~Gg~ia~~~a~~~~ 516 (563)
. .. .+++++++ .|+.++++.+ ...+++++||||||.+++.++.+|+
T Consensus 124 h~~~~~~~~~fw~~s~~e~a~~Dl~a~id~i~~~~~~~v~~VGhS~Gg~~~~~~~~~p~ 182 (395)
T PLN02872 124 HVTLSEKDKEFWDWSWQELALYDLAEMIHYVYSITNSKIFIVGHSQGTIMSLAALTQPN 182 (395)
T ss_pred CCCCCccchhccCCcHHHHHHHHHHHHHHHHHhccCCceEEEEECHHHHHHHHHhhChH
Confidence 1 11 46777777 7888888876 3479999999999999986665554
No 70
>PF06342 DUF1057: Alpha/beta hydrolase of unknown function (DUF1057); InterPro: IPR010463 This entry consists of proteins of unknown function which have an alpha/beta hydrolase fold.
Probab=99.02 E-value=3.6e-09 Score=103.95 Aligned_cols=108 Identities=16% Similarity=0.100 Sum_probs=90.8
Q ss_pred EEEEeCCC---CCeEEEECCCCCChHHHHHHHHHHhhCCCEEEEEcCCCCCCCCCCC-cCCCHHHHHHHHHHHHHHhCC-
Q 008512 419 QYTVAGKE---GPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPN-IVYTELMWSELLRDFTVEVVG- 493 (563)
Q Consensus 419 ~y~~~g~~---~~~vlllHG~~~~~~~~~~~~~~l~~~g~~Vi~~D~~G~G~S~~~~-~~~~~~~~~~~l~~~l~~l~~- 493 (563)
.|....+. ..+||=+||-+|+..+|..+...|.+.|.+++.+++||+|.++++. ..++..+....+.++++.+++
T Consensus 24 ~y~D~~~~gs~~gTVv~~hGsPGSH~DFkYi~~~l~~~~iR~I~iN~PGf~~t~~~~~~~~~n~er~~~~~~ll~~l~i~ 103 (297)
T PF06342_consen 24 VYEDSLPSGSPLGTVVAFHGSPGSHNDFKYIRPPLDEAGIRFIGINYPGFGFTPGYPDQQYTNEERQNFVNALLDELGIK 103 (297)
T ss_pred EEEecCCCCCCceeEEEecCCCCCccchhhhhhHHHHcCeEEEEeCCCCCCCCCCCcccccChHHHHHHHHHHHHHcCCC
Confidence 35554433 3379999999999999999999999999999999999999998754 678999999999999999987
Q ss_pred CcEEEEEechhHHHHHHHHhccCcccEEEEEcC
Q 008512 494 EPVHLIGNSIGGMFLSTNLTRGKLYAFLLSVNY 526 (563)
Q Consensus 494 ~~i~lvGhS~Gg~ia~~~a~~~~~~~~v~~~~~ 526 (563)
++++.+|||.|+-.|+.++...+..+.+++.++
T Consensus 104 ~~~i~~gHSrGcenal~la~~~~~~g~~lin~~ 136 (297)
T PF06342_consen 104 GKLIFLGHSRGCENALQLAVTHPLHGLVLINPP 136 (297)
T ss_pred CceEEEEeccchHHHHHHHhcCccceEEEecCC
Confidence 678889999999999999987555555555443
No 71
>TIGR01836 PHA_synth_III_C poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit. This model represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR), all members require PhaE (TIGR01834) for activity and are designated class III. This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerize short-chain-length hydroxyalkanoates.
Probab=99.01 E-value=1.5e-09 Score=113.76 Aligned_cols=112 Identities=13% Similarity=0.061 Sum_probs=78.4
Q ss_pred EECCeEEEEEEeC---CCCCeEEEECCCCCChHHH-----HHHHHHHhhCCCEEEEEcCCCCCCCCCCCcCCCHHHHH--
Q 008512 412 RWNGYQIQYTVAG---KEGPAILLVHGFGAFLEHY-----RDNIYDIADGGNRVWAITLLGFGRSEKPNIVYTELMWS-- 481 (563)
Q Consensus 412 ~~~g~~l~y~~~g---~~~~~vlllHG~~~~~~~~-----~~~~~~l~~~g~~Vi~~D~~G~G~S~~~~~~~~~~~~~-- 481 (563)
+.++..+...... ..+++||++||+..+...+ ..+++.|.+.||+|+++|++|+|.++.. .+++++.
T Consensus 44 ~~~~~~l~~~~~~~~~~~~~pvl~v~~~~~~~~~~d~~~~~~~~~~L~~~G~~V~~~D~~g~g~s~~~---~~~~d~~~~ 120 (350)
T TIGR01836 44 REDKVVLYRYTPVKDNTHKTPLLIVYALVNRPYMLDLQEDRSLVRGLLERGQDVYLIDWGYPDRADRY---LTLDDYING 120 (350)
T ss_pred EcCcEEEEEecCCCCcCCCCcEEEeccccccceeccCCCCchHHHHHHHCCCeEEEEeCCCCCHHHhc---CCHHHHHHH
Confidence 3445555543322 1145799999986554443 5789999999999999999999987532 3555554
Q ss_pred ---HHHHHHHHHhCCCcEEEEEechhHHHHHHHHhc-cCcccEEEEEcC
Q 008512 482 ---ELLRDFTVEVVGEPVHLIGNSIGGMFLSTNLTR-GKLYAFLLSVNY 526 (563)
Q Consensus 482 ---~~l~~~l~~l~~~~i~lvGhS~Gg~ia~~~a~~-~~~~~~v~~~~~ 526 (563)
+.+..+.+..+.++++++||||||.+++.++.. ++.++.++++.+
T Consensus 121 ~~~~~v~~l~~~~~~~~i~lvGhS~GG~i~~~~~~~~~~~v~~lv~~~~ 169 (350)
T TIGR01836 121 YIDKCVDYICRTSKLDQISLLGICQGGTFSLCYAALYPDKIKNLVTMVT 169 (350)
T ss_pred HHHHHHHHHHHHhCCCcccEEEECHHHHHHHHHHHhCchheeeEEEecc
Confidence 334445555677899999999999999998776 665666555444
No 72
>PLN00021 chlorophyllase
Probab=98.99 E-value=2.7e-09 Score=109.64 Aligned_cols=102 Identities=18% Similarity=0.183 Sum_probs=70.3
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHHhhCCCEEEEEcCCCCCCCCCCCcCCCHHHHHHHHHHHHHH-------hCCCcEEE
Q 008512 426 EGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFTVE-------VVGEPVHL 498 (563)
Q Consensus 426 ~~~~vlllHG~~~~~~~~~~~~~~l~~~g~~Vi~~D~~G~G~S~~~~~~~~~~~~~~~l~~~l~~-------l~~~~i~l 498 (563)
..|+||++||++.+...|..+++.|++.||.|+++|++|++.+.......+..+..+.+.+.++. ...+++++
T Consensus 51 ~~PvVv~lHG~~~~~~~y~~l~~~Las~G~~VvapD~~g~~~~~~~~~i~d~~~~~~~l~~~l~~~l~~~~~~d~~~v~l 130 (313)
T PLN00021 51 TYPVLLFLHGYLLYNSFYSQLLQHIASHGFIVVAPQLYTLAGPDGTDEIKDAAAVINWLSSGLAAVLPEGVRPDLSKLAL 130 (313)
T ss_pred CCCEEEEECCCCCCcccHHHHHHHHHhCCCEEEEecCCCcCCCCchhhHHHHHHHHHHHHhhhhhhcccccccChhheEE
Confidence 36899999999999999999999999999999999999975332111011122223333322222 22368999
Q ss_pred EEechhHHHHHHHHhc-cC-----cccEEEEEcCc
Q 008512 499 IGNSIGGMFLSTNLTR-GK-----LYAFLLSVNYL 527 (563)
Q Consensus 499 vGhS~Gg~ia~~~a~~-~~-----~~~~v~~~~~~ 527 (563)
+||||||.+++.++.. +. .++.++.+.+.
T Consensus 131 ~GHS~GG~iA~~lA~~~~~~~~~~~v~ali~ldPv 165 (313)
T PLN00021 131 AGHSRGGKTAFALALGKAAVSLPLKFSALIGLDPV 165 (313)
T ss_pred EEECcchHHHHHHHhhccccccccceeeEEeeccc
Confidence 9999999999999875 32 34566655553
No 73
>PRK06765 homoserine O-acetyltransferase; Provisional
Probab=98.99 E-value=2.9e-09 Score=112.70 Aligned_cols=117 Identities=20% Similarity=0.171 Sum_probs=90.1
Q ss_pred CCeEEEEEEeCCC----CCeEEEECCCCCChHH-------------HHHHHH---HHhhCCCEEEEEcCCCCCCCC----
Q 008512 414 NGYQIQYTVAGKE----GPAILLVHGFGAFLEH-------------YRDNIY---DIADGGNRVWAITLLGFGRSE---- 469 (563)
Q Consensus 414 ~g~~l~y~~~g~~----~~~vlllHG~~~~~~~-------------~~~~~~---~l~~~g~~Vi~~D~~G~G~S~---- 469 (563)
..++|.|..+|.- .++||++|+++++... |..++- .|-...|.||++|..|-|.|.
T Consensus 39 ~~~~~~Y~t~G~ln~~~~n~vlv~h~~tg~~h~~~~~~~~~~~~gww~~~iG~g~~lDt~~yfvi~~n~lG~~~~~~p~~ 118 (389)
T PRK06765 39 PDVQMGYETYGTLNRAKSNVILITHYFSATSHAAGKYTADDEESGYWDGLIGPGKAIDTNKYFVISTDTLCNVQVKDPNV 118 (389)
T ss_pred CCceEEEEeccccCCCCCCEEEEeCCCCCchhhcccccccCCCcccHHhccCCCCCcCCCceEEEEecccCCCcCCCCCC
Confidence 5688999999852 5689999999886422 544432 244446999999999876531
Q ss_pred ---C-----C---------CcCCCHHHHHHHHHHHHHHhCCCcEE-EEEechhHHHHHHHHhc-cCcccEEEEEcCcCCh
Q 008512 470 ---K-----P---------NIVYTELMWSELLRDFTVEVVGEPVH-LIGNSIGGMFLSTNLTR-GKLYAFLLSVNYLLSR 530 (563)
Q Consensus 470 ---~-----~---------~~~~~~~~~~~~l~~~l~~l~~~~i~-lvGhS~Gg~ia~~~a~~-~~~~~~v~~~~~~~~~ 530 (563)
+ + ...+++.++++++..+++++++.+++ ++||||||++++.+|.+ |+.++.++++......
T Consensus 119 g~tgp~s~~p~tg~~~~~~fP~~t~~d~~~~~~~ll~~lgi~~~~~vvG~SmGG~ial~~a~~~P~~v~~lv~ia~~~~~ 198 (389)
T PRK06765 119 ITTGPASINPKTGKPYGMDFPVVTILDFVRVQKELIKSLGIARLHAVMGPSMGGMQAQEWAVHYPHMVERMIGVIGNPQN 198 (389)
T ss_pred CCCCCCCCCcCCCCccCCCCCcCcHHHHHHHHHHHHHHcCCCCceEEEEECHHHHHHHHHHHHChHhhheEEEEecCCCC
Confidence 1 1 01368999999999999999999986 99999999999999987 8888888887664433
No 74
>TIGR00976 /NonD putative hydrolase, CocE/NonD family. This model represents a protein subfamily that includes the cocaine esterase CocE, several glutaryl-7-ACA acylases, and the putative diester hydrolase NonD of Streptomyces griseus (all hydrolases). This family shows extensive, low-level similarity to a family of xaa-pro dipeptidyl-peptidases, and local similarity by PSI-BLAST to many other hydrolases.
Probab=98.96 E-value=2.5e-09 Score=118.84 Aligned_cols=113 Identities=14% Similarity=-0.012 Sum_probs=83.1
Q ss_pred CCeEEEEEEeCC----CCCeEEEECCCCCChH---HH-HHHHHHHhhCCCEEEEEcCCCCCCCCCCCcCCCHHHHHHHHH
Q 008512 414 NGYQIQYTVAGK----EGPAILLVHGFGAFLE---HY-RDNIYDIADGGNRVWAITLLGFGRSEKPNIVYTELMWSELLR 485 (563)
Q Consensus 414 ~g~~l~y~~~g~----~~~~vlllHG~~~~~~---~~-~~~~~~l~~~g~~Vi~~D~~G~G~S~~~~~~~~~~~~~~~l~ 485 (563)
+|.+|++..+.+ +.|+||++||++.+.. .+ ......|+++||.|+++|+||+|.|++....++ ...++|+.
T Consensus 5 DG~~L~~~~~~P~~~~~~P~Il~~~gyg~~~~~~~~~~~~~~~~l~~~Gy~vv~~D~RG~g~S~g~~~~~~-~~~~~D~~ 83 (550)
T TIGR00976 5 DGTRLAIDVYRPAGGGPVPVILSRTPYGKDAGLRWGLDKTEPAWFVAQGYAVVIQDTRGRGASEGEFDLLG-SDEAADGY 83 (550)
T ss_pred CCCEEEEEEEecCCCCCCCEEEEecCCCCchhhccccccccHHHHHhCCcEEEEEeccccccCCCceEecC-cccchHHH
Confidence 677777544422 3578999999997653 12 234567888899999999999999987654343 45667777
Q ss_pred HHHHHhC-----CCcEEEEEechhHHHHHHHHhc-cCcccEEEEEcCc
Q 008512 486 DFTVEVV-----GEPVHLIGNSIGGMFLSTNLTR-GKLYAFLLSVNYL 527 (563)
Q Consensus 486 ~~l~~l~-----~~~i~lvGhS~Gg~ia~~~a~~-~~~~~~v~~~~~~ 527 (563)
++++.+. ..+|.++||||||.+++.+|.. ++.+++++...+.
T Consensus 84 ~~i~~l~~q~~~~~~v~~~G~S~GG~~a~~~a~~~~~~l~aiv~~~~~ 131 (550)
T TIGR00976 84 DLVDWIAKQPWCDGNVGMLGVSYLAVTQLLAAVLQPPALRAIAPQEGV 131 (550)
T ss_pred HHHHHHHhCCCCCCcEEEEEeChHHHHHHHHhccCCCceeEEeecCcc
Confidence 7777653 3689999999999999999886 6666666664443
No 75
>TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I. This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=98.90 E-value=6.4e-09 Score=113.50 Aligned_cols=101 Identities=18% Similarity=0.093 Sum_probs=78.3
Q ss_pred CCeEEEECCCCCChHHHH-----HHHHHHhhCCCEEEEEcCCCCCCCCCCC--cCCCHHHHHHHHHHHHHHhCCCcEEEE
Q 008512 427 GPAILLVHGFGAFLEHYR-----DNIYDIADGGNRVWAITLLGFGRSEKPN--IVYTELMWSELLRDFTVEVVGEPVHLI 499 (563)
Q Consensus 427 ~~~vlllHG~~~~~~~~~-----~~~~~l~~~g~~Vi~~D~~G~G~S~~~~--~~~~~~~~~~~l~~~l~~l~~~~i~lv 499 (563)
+++||++||+......++ .+++.|.++||+|+++|++|+|.+.... .+|..+.+.+.+..+++..+.++++++
T Consensus 188 ~~PlLiVp~~i~k~yilDL~p~~Slv~~L~~qGf~V~~iDwrgpg~s~~~~~~ddY~~~~i~~al~~v~~~~g~~kv~lv 267 (532)
T TIGR01838 188 KTPLLIVPPWINKYYILDLRPQNSLVRWLVEQGHTVFVISWRNPDASQADKTFDDYIRDGVIAALEVVEAITGEKQVNCV 267 (532)
T ss_pred CCcEEEECcccccceeeecccchHHHHHHHHCCcEEEEEECCCCCcccccCChhhhHHHHHHHHHHHHHHhcCCCCeEEE
Confidence 679999999988777664 7899999999999999999999886532 345555677778788888888999999
Q ss_pred EechhHHHHHH----HHh-c-cCcccEEEEEcCc
Q 008512 500 GNSIGGMFLST----NLT-R-GKLYAFLLSVNYL 527 (563)
Q Consensus 500 GhS~Gg~ia~~----~a~-~-~~~~~~v~~~~~~ 527 (563)
||||||.++.. ++. . ++.++.++++...
T Consensus 268 G~cmGGtl~a~ala~~aa~~~~~rv~slvll~t~ 301 (532)
T TIGR01838 268 GYCIGGTLLSTALAYLAARGDDKRIKSATFFTTL 301 (532)
T ss_pred EECcCcHHHHHHHHHHHHhCCCCccceEEEEecC
Confidence 99999998632 233 3 5567766665543
No 76
>TIGR01840 esterase_phb esterase, PHB depolymerase family. This model describes a subfamily among lipases of the ab-hydrolase family. This subfamily includes bacterial depolymerases for poly(3-hydroxybutyrate) (PHB) and related polyhydroxyalkanoates (PHA), as well as acetyl xylan esterases, feruloyl esterases, and others from fungi.
Probab=98.90 E-value=1.6e-08 Score=98.30 Aligned_cols=103 Identities=17% Similarity=0.016 Sum_probs=71.0
Q ss_pred CCCeEEEECCCCCChHHHH---HHHHHHhhCCCEEEEEcCCCCCCCCCCC----------cCCCHHHHHHHHHHHHHHhC
Q 008512 426 EGPAILLVHGFGAFLEHYR---DNIYDIADGGNRVWAITLLGFGRSEKPN----------IVYTELMWSELLRDFTVEVV 492 (563)
Q Consensus 426 ~~~~vlllHG~~~~~~~~~---~~~~~l~~~g~~Vi~~D~~G~G~S~~~~----------~~~~~~~~~~~l~~~l~~l~ 492 (563)
+.|.||++||.+++...+. .+...+.+.||.|+++|++|++.+.... ......++.+.+..+.+...
T Consensus 12 ~~P~vv~lHG~~~~~~~~~~~~~~~~~a~~~g~~Vv~Pd~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 91 (212)
T TIGR01840 12 PRALVLALHGCGQTASAYVIDWGWKAAADRYGFVLVAPEQTSYNSSNNCWDWFFTHHRARGTGEVESLHQLIDAVKANYS 91 (212)
T ss_pred CCCEEEEeCCCCCCHHHHhhhcChHHHHHhCCeEEEecCCcCccccCCCCCCCCccccCCCCccHHHHHHHHHHHHHhcC
Confidence 4689999999999887775 3455555679999999999987543210 01122333333444444433
Q ss_pred C--CcEEEEEechhHHHHHHHHhc-cCcccEEEEEcCcC
Q 008512 493 G--EPVHLIGNSIGGMFLSTNLTR-GKLYAFLLSVNYLL 528 (563)
Q Consensus 493 ~--~~i~lvGhS~Gg~ia~~~a~~-~~~~~~v~~~~~~~ 528 (563)
. ++++|+||||||.+++.++.. ++..++++.+.+..
T Consensus 92 id~~~i~l~G~S~Gg~~a~~~a~~~p~~~~~~~~~~g~~ 130 (212)
T TIGR01840 92 IDPNRVYVTGLSAGGGMTAVLGCTYPDVFAGGASNAGLP 130 (212)
T ss_pred cChhheEEEEECHHHHHHHHHHHhCchhheEEEeecCCc
Confidence 3 589999999999999999876 77777776665543
No 77
>PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A ....
Probab=98.88 E-value=4.9e-09 Score=101.55 Aligned_cols=73 Identities=23% Similarity=0.237 Sum_probs=65.9
Q ss_pred CEEEEEcCCCCCCCCC---C-CcCCCHHHHHHHHHHHHHHhCCCcEEEEEechhHHHHHHHHhc-cCcccEEEEEcCc
Q 008512 455 NRVWAITLLGFGRSEK---P-NIVYTELMWSELLRDFTVEVVGEPVHLIGNSIGGMFLSTNLTR-GKLYAFLLSVNYL 527 (563)
Q Consensus 455 ~~Vi~~D~~G~G~S~~---~-~~~~~~~~~~~~l~~~l~~l~~~~i~lvGhS~Gg~ia~~~a~~-~~~~~~v~~~~~~ 527 (563)
|+|+++|+||+|.|+. . ...++.+++++++..+++.++.++++++||||||.+++.++.. |+.++.+++..+.
T Consensus 1 f~vi~~d~rG~g~S~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vG~S~Gg~~~~~~a~~~p~~v~~lvl~~~~ 78 (230)
T PF00561_consen 1 FDVILFDLRGFGYSSPHWDPDFPDYTTDDLAADLEALREALGIKKINLVGHSMGGMLALEYAAQYPERVKKLVLISPP 78 (230)
T ss_dssp EEEEEEECTTSTTSSSCCGSGSCTHCHHHHHHHHHHHHHHHTTSSEEEEEETHHHHHHHHHHHHSGGGEEEEEEESES
T ss_pred CEEEEEeCCCCCCCCCCccCCcccccHHHHHHHHHHHHHHhCCCCeEEEEECCChHHHHHHHHHCchhhcCcEEEeee
Confidence 7899999999999985 2 3578999999999999999999999999999999999999987 8888888887775
No 78
>TIGR02821 fghA_ester_D S-formylglutathione hydrolase. This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well.
Probab=98.86 E-value=4.8e-08 Score=98.90 Aligned_cols=115 Identities=16% Similarity=0.169 Sum_probs=77.6
Q ss_pred CCeEEEEEEeCC------CCCeEEEECCCCCChHHHHHH--HHHH-hhCCCEEEEEcC--CCCCCCCCC-----------
Q 008512 414 NGYQIQYTVAGK------EGPAILLVHGFGAFLEHYRDN--IYDI-ADGGNRVWAITL--LGFGRSEKP----------- 471 (563)
Q Consensus 414 ~g~~l~y~~~g~------~~~~vlllHG~~~~~~~~~~~--~~~l-~~~g~~Vi~~D~--~G~G~S~~~----------- 471 (563)
.+..+.|....+ +.|+|+++||++++...|... +..+ .+.|+.|+++|. +|+|.+...
T Consensus 23 ~~~~~~~~v~~P~~~~~~~~P~vvllHG~~~~~~~~~~~~~~~~la~~~g~~Vv~Pd~~~~g~~~~~~~~~w~~g~~~~~ 102 (275)
T TIGR02821 23 CGVPMTFGVFLPPQAAAGPVPVLWYLSGLTCTHENFMIKAGAQRFAAEHGLALVAPDTSPRGTGIAGEDDAWDFGKGAGF 102 (275)
T ss_pred cCCceEEEEEcCCCccCCCCCEEEEccCCCCCccHHHhhhHHHHHHhhcCcEEEEeCCCCCcCCCCCCcccccccCCccc
Confidence 445555554432 257899999999988877532 3344 456899999998 555533210
Q ss_pred ---------CcCCCHH-HHHHHHHHHHHH---hCCCcEEEEEechhHHHHHHHHhc-cCcccEEEEEcCcC
Q 008512 472 ---------NIVYTEL-MWSELLRDFTVE---VVGEPVHLIGNSIGGMFLSTNLTR-GKLYAFLLSVNYLL 528 (563)
Q Consensus 472 ---------~~~~~~~-~~~~~l~~~l~~---l~~~~i~lvGhS~Gg~ia~~~a~~-~~~~~~v~~~~~~~ 528 (563)
...+... .+.+++..++++ +..++++++||||||++++.++.+ |+.++.++.+.+..
T Consensus 103 ~~d~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~G~S~GG~~a~~~a~~~p~~~~~~~~~~~~~ 173 (275)
T TIGR02821 103 YVDATEEPWSQHYRMYSYIVQELPALVAAQFPLDGERQGITGHSMGGHGALVIALKNPDRFKSVSAFAPIV 173 (275)
T ss_pred cccCCcCcccccchHHHHHHHHHHHHHHhhCCCCCCceEEEEEChhHHHHHHHHHhCcccceEEEEECCcc
Confidence 0012222 335677777766 345789999999999999999886 88888887766653
No 79
>KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=98.85 E-value=3.3e-08 Score=96.01 Aligned_cols=102 Identities=20% Similarity=0.139 Sum_probs=76.4
Q ss_pred CCeEEEECCCCCChHHHHHHHHHHhh-CCCEEEEEcCCCCCCCCCCCcCCCHHHHHHHHHHHHHH-hC-CCcEEEEEech
Q 008512 427 GPAILLVHGFGAFLEHYRDNIYDIAD-GGNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFTVE-VV-GEPVHLIGNSI 503 (563)
Q Consensus 427 ~~~vlllHG~~~~~~~~~~~~~~l~~-~g~~Vi~~D~~G~G~S~~~~~~~~~~~~~~~l~~~l~~-l~-~~~i~lvGhS~ 503 (563)
.+++|++||..........+...|.. -+++|+++|++|+|.|.+.+......+-++.+-+.+.+ .+ .++|+|+|+||
T Consensus 60 ~~~lly~hGNa~Dlgq~~~~~~~l~~~ln~nv~~~DYSGyG~S~G~psE~n~y~Di~avye~Lr~~~g~~~~Iil~G~Si 139 (258)
T KOG1552|consen 60 HPTLLYSHGNAADLGQMVELFKELSIFLNCNVVSYDYSGYGRSSGKPSERNLYADIKAVYEWLRNRYGSPERIILYGQSI 139 (258)
T ss_pred ceEEEEcCCcccchHHHHHHHHHHhhcccceEEEEecccccccCCCcccccchhhHHHHHHHHHhhcCCCceEEEEEecC
Confidence 47999999997776665566666655 47999999999999999977555443334444444443 32 58899999999
Q ss_pred hHHHHHHHHhccCcccEEEEEcCcCC
Q 008512 504 GGMFLSTNLTRGKLYAFLLSVNYLLS 529 (563)
Q Consensus 504 Gg~ia~~~a~~~~~~~~v~~~~~~~~ 529 (563)
|+..++.+|.+.+ .+++++.+++..
T Consensus 140 Gt~~tv~Lasr~~-~~alVL~SPf~S 164 (258)
T KOG1552|consen 140 GTVPTVDLASRYP-LAAVVLHSPFTS 164 (258)
T ss_pred CchhhhhHhhcCC-cceEEEeccchh
Confidence 9999999999855 667777666653
No 80
>KOG2984 consensus Predicted hydrolase [General function prediction only]
Probab=98.84 E-value=4.1e-09 Score=97.73 Aligned_cols=118 Identities=19% Similarity=0.246 Sum_probs=93.6
Q ss_pred eeEEEEEECCeEEEEEEeCCCCCeEEEECCCCCC-hHHHHHHHHHHhhC-CCEEEEEcCCCCCCCCCCCcCCCHHHH---
Q 008512 406 YSTRIWRWNGYQIQYTVAGKEGPAILLVHGFGAF-LEHYRDNIYDIADG-GNRVWAITLLGFGRSEKPNIVYTELMW--- 480 (563)
Q Consensus 406 ~~~~~~~~~g~~l~y~~~g~~~~~vlllHG~~~~-~~~~~~~~~~l~~~-g~~Vi~~D~~G~G~S~~~~~~~~~~~~--- 480 (563)
++...+.++|.+|+|...|.+...||+++|..|+ ..+|.+.+..+... .+.|++.|.||+|.|..+...+..+.+
T Consensus 21 ~te~kv~vng~ql~y~~~G~G~~~iLlipGalGs~~tDf~pql~~l~k~l~~TivawDPpGYG~SrPP~Rkf~~~ff~~D 100 (277)
T KOG2984|consen 21 YTESKVHVNGTQLGYCKYGHGPNYILLIPGALGSYKTDFPPQLLSLFKPLQVTIVAWDPPGYGTSRPPERKFEVQFFMKD 100 (277)
T ss_pred hhhheeeecCceeeeeecCCCCceeEecccccccccccCCHHHHhcCCCCceEEEEECCCCCCCCCCCcccchHHHHHHh
Confidence 4445678899999999999777789999998665 56888888777654 389999999999999887655555444
Q ss_pred HHHHHHHHHHhCCCcEEEEEechhHHHHHHHHhc-cCcccEEEE
Q 008512 481 SELLRDFTVEVVGEPVHLIGNSIGGMFLSTNLTR-GKLYAFLLS 523 (563)
Q Consensus 481 ~~~l~~~l~~l~~~~i~lvGhS~Gg~ia~~~a~~-~~~~~~v~~ 523 (563)
+++..++++.+..+++.++|+|-||.+++..|++ ++.+..+++
T Consensus 101 a~~avdLM~aLk~~~fsvlGWSdGgiTalivAak~~e~v~rmii 144 (277)
T KOG2984|consen 101 AEYAVDLMEALKLEPFSVLGWSDGGITALIVAAKGKEKVNRMII 144 (277)
T ss_pred HHHHHHHHHHhCCCCeeEeeecCCCeEEEEeeccChhhhhhhee
Confidence 5555667788899999999999999999998887 444444444
No 81
>KOG2382 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=98.84 E-value=1.4e-08 Score=102.08 Aligned_cols=97 Identities=25% Similarity=0.360 Sum_probs=78.9
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHHhhC-CCEEEEEcCCCCCCCCCCCcCCCHHHHHHHHHHHHHHhC----CCcEEEEE
Q 008512 426 EGPAILLVHGFGAFLEHYRDNIYDIADG-GNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFTVEVV----GEPVHLIG 500 (563)
Q Consensus 426 ~~~~vlllHG~~~~~~~~~~~~~~l~~~-g~~Vi~~D~~G~G~S~~~~~~~~~~~~~~~l~~~l~~l~----~~~i~lvG 500 (563)
..|+++++||+.|+...|..+...|+.. +-.|++.|.|-||.|.... ..+...+++|+..+++..+ ..+++++|
T Consensus 51 ~~Pp~i~lHGl~GS~~Nw~sv~k~Ls~~l~~~v~~vd~RnHG~Sp~~~-~h~~~~ma~dv~~Fi~~v~~~~~~~~~~l~G 129 (315)
T KOG2382|consen 51 RAPPAIILHGLLGSKENWRSVAKNLSRKLGRDVYAVDVRNHGSSPKIT-VHNYEAMAEDVKLFIDGVGGSTRLDPVVLLG 129 (315)
T ss_pred CCCceEEecccccCCCCHHHHHHHhcccccCceEEEecccCCCCcccc-ccCHHHHHHHHHHHHHHcccccccCCceecc
Confidence 4789999999999999999999999864 7899999999999996543 4568899999999999885 57899999
Q ss_pred echhH-HHHHHHHhc-cCcccEEEE
Q 008512 501 NSIGG-MFLSTNLTR-GKLYAFLLS 523 (563)
Q Consensus 501 hS~Gg-~ia~~~a~~-~~~~~~v~~ 523 (563)
||||| .+++..+.. |..+..+++
T Consensus 130 HsmGG~~~~m~~t~~~p~~~~rliv 154 (315)
T KOG2382|consen 130 HSMGGVKVAMAETLKKPDLIERLIV 154 (315)
T ss_pred cCcchHHHHHHHHHhcCcccceeEE
Confidence 99999 444444443 665555444
No 82
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=98.77 E-value=5.4e-08 Score=95.23 Aligned_cols=100 Identities=16% Similarity=0.124 Sum_probs=81.3
Q ss_pred CeEEEECCCCCChHHHHHHHHHHhhCCCEEEEEcCCCCCCCCCCCcCCCHHHHHHHHHHHHHHhCC-CcEEEEEechhHH
Q 008512 428 PAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFTVEVVG-EPVHLIGNSIGGM 506 (563)
Q Consensus 428 ~~vlllHG~~~~~~~~~~~~~~l~~~g~~Vi~~D~~G~G~S~~~~~~~~~~~~~~~l~~~l~~l~~-~~i~lvGhS~Gg~ 506 (563)
++|+++|+.+|+...|..+++.|....+.|+.++++|.+ .......+++++++...+.|..... +++.|+|||+||.
T Consensus 1 ~~lf~~p~~gG~~~~y~~la~~l~~~~~~v~~i~~~~~~--~~~~~~~si~~la~~y~~~I~~~~~~gp~~L~G~S~Gg~ 78 (229)
T PF00975_consen 1 RPLFCFPPAGGSASSYRPLARALPDDVIGVYGIEYPGRG--DDEPPPDSIEELASRYAEAIRARQPEGPYVLAGWSFGGI 78 (229)
T ss_dssp -EEEEESSTTCSGGGGHHHHHHHTTTEEEEEEECSTTSC--TTSHEESSHHHHHHHHHHHHHHHTSSSSEEEEEETHHHH
T ss_pred CeEEEEcCCccCHHHHHHHHHhCCCCeEEEEEEecCCCC--CCCCCCCCHHHHHHHHHHHhhhhCCCCCeeehccCccHH
Confidence 479999999999999999999998844899999999998 2233457899998888887777655 4999999999999
Q ss_pred HHHHHHhc----cCcccEEEEEcCcCC
Q 008512 507 FLSTNLTR----GKLYAFLLSVNYLLS 529 (563)
Q Consensus 507 ia~~~a~~----~~~~~~v~~~~~~~~ 529 (563)
+|..+|.+ ...+..+++++...+
T Consensus 79 lA~E~A~~Le~~G~~v~~l~liD~~~p 105 (229)
T PF00975_consen 79 LAFEMARQLEEAGEEVSRLILIDSPPP 105 (229)
T ss_dssp HHHHHHHHHHHTT-SESEEEEESCSST
T ss_pred HHHHHHHHHHHhhhccCceEEecCCCC
Confidence 99999875 345777888775443
No 83
>PLN02442 S-formylglutathione hydrolase
Probab=98.76 E-value=8.5e-08 Score=97.51 Aligned_cols=115 Identities=17% Similarity=0.136 Sum_probs=77.9
Q ss_pred CCeEEEEEEeC------CCCCeEEEECCCCCChHHHHH---HHHHHhhCCCEEEEEcCCCCCC-----CC------CCC-
Q 008512 414 NGYQIQYTVAG------KEGPAILLVHGFGAFLEHYRD---NIYDIADGGNRVWAITLLGFGR-----SE------KPN- 472 (563)
Q Consensus 414 ~g~~l~y~~~g------~~~~~vlllHG~~~~~~~~~~---~~~~l~~~g~~Vi~~D~~G~G~-----S~------~~~- 472 (563)
-|..+.|..+- .+-|+|+|+||++++...|.. +...+...|+.|+.+|..++|. +. +..
T Consensus 28 l~~~~~~~vy~P~~~~~~~~Pvv~~lHG~~~~~~~~~~~~~~~~~~~~~g~~Vv~pd~~~~g~~~~~~~~~~~~~~~~~~ 107 (283)
T PLN02442 28 LGCSMTFSVYFPPASDSGKVPVLYWLSGLTCTDENFIQKSGAQRAAAARGIALVAPDTSPRGLNVEGEADSWDFGVGAGF 107 (283)
T ss_pred cCCceEEEEEcCCcccCCCCCEEEEecCCCcChHHHHHhhhHHHHHhhcCeEEEecCCCCCCCCCCCCccccccCCCcce
Confidence 44555555442 235799999999998877753 3456667799999999887761 10 000
Q ss_pred ------------c--CCCHHHHHHHHHHHHHHhCCCcEEEEEechhHHHHHHHHhc-cCcccEEEEEcCcC
Q 008512 473 ------------I--VYTELMWSELLRDFTVEVVGEPVHLIGNSIGGMFLSTNLTR-GKLYAFLLSVNYLL 528 (563)
Q Consensus 473 ------------~--~~~~~~~~~~l~~~l~~l~~~~i~lvGhS~Gg~ia~~~a~~-~~~~~~v~~~~~~~ 528 (563)
. .+-.+++...+......+..++++|+||||||++++.++.+ |+.++.++..++..
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~i~G~S~GG~~a~~~a~~~p~~~~~~~~~~~~~ 178 (283)
T PLN02442 108 YLNATQEKWKNWRMYDYVVKELPKLLSDNFDQLDTSRASIFGHSMGGHGALTIYLKNPDKYKSVSAFAPIA 178 (283)
T ss_pred eeccccCCCcccchhhhHHHHHHHHHHHHHHhcCCCceEEEEEChhHHHHHHHHHhCchhEEEEEEECCcc
Confidence 0 11123444444444455567889999999999999999887 88888777777764
No 84
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=98.71 E-value=1.2e-07 Score=95.15 Aligned_cols=103 Identities=20% Similarity=0.181 Sum_probs=71.2
Q ss_pred CCeEEEECCCCCCh-HHH-HHHHHHHhhCCCEEEEEcCCCCCCCCCCCcCCCHHHHHHHHHHHHHHh----CCCcEEEEE
Q 008512 427 GPAILLVHGFGAFL-EHY-RDNIYDIADGGNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFTVEV----VGEPVHLIG 500 (563)
Q Consensus 427 ~~~vlllHG~~~~~-~~~-~~~~~~l~~~g~~Vi~~D~~G~G~S~~~~~~~~~~~~~~~l~~~l~~l----~~~~i~lvG 500 (563)
.|.||++||+.|+. +.| ..++..+.++||.|+++|+|||+.+..........-+.+|+..+++.+ ...++..+|
T Consensus 75 ~P~vVl~HGL~G~s~s~y~r~L~~~~~~rg~~~Vv~~~Rgcs~~~n~~p~~yh~G~t~D~~~~l~~l~~~~~~r~~~avG 154 (345)
T COG0429 75 KPLVVLFHGLEGSSNSPYARGLMRALSRRGWLVVVFHFRGCSGEANTSPRLYHSGETEDIRFFLDWLKARFPPRPLYAVG 154 (345)
T ss_pred CceEEEEeccCCCCcCHHHHHHHHHHHhcCCeEEEEecccccCCcccCcceecccchhHHHHHHHHHHHhCCCCceEEEE
Confidence 67999999997653 334 477888999999999999999999876322221122335555555444 568999999
Q ss_pred echhHHHHHHHHh-c---cCcccEEEEEcCcCC
Q 008512 501 NSIGGMFLSTNLT-R---GKLYAFLLSVNYLLS 529 (563)
Q Consensus 501 hS~Gg~ia~~~a~-~---~~~~~~v~~~~~~~~ 529 (563)
.|+||.+...+.. . ..+.++++++.++..
T Consensus 155 ~SLGgnmLa~ylgeeg~d~~~~aa~~vs~P~Dl 187 (345)
T COG0429 155 FSLGGNMLANYLGEEGDDLPLDAAVAVSAPFDL 187 (345)
T ss_pred ecccHHHHHHHHHhhccCcccceeeeeeCHHHH
Confidence 9999966655543 3 445666666665543
No 85
>KOG4391 consensus Predicted alpha/beta hydrolase BEM46 [General function prediction only]
Probab=98.70 E-value=3.5e-08 Score=92.60 Aligned_cols=115 Identities=13% Similarity=0.100 Sum_probs=82.7
Q ss_pred EEEEECCeEEEEEEe--CCCCCeEEEECCCCCChHHHHHHHHHH-hhCCCEEEEEcCCCCCCCCCCCcCCCHHHHHHHHH
Q 008512 409 RIWRWNGYQIQYTVA--GKEGPAILLVHGFGAFLEHYRDNIYDI-ADGGNRVWAITLLGFGRSEKPNIVYTELMWSELLR 485 (563)
Q Consensus 409 ~~~~~~g~~l~y~~~--g~~~~~vlllHG~~~~~~~~~~~~~~l-~~~g~~Vi~~D~~G~G~S~~~~~~~~~~~~~~~l~ 485 (563)
+..+-|.++++-... .+..|+++++||..|+......++.-+ .+.+.+|+.+++||+|.|++.+.+-.+. -|..
T Consensus 58 ~l~T~D~vtL~a~~~~~E~S~pTlLyfh~NAGNmGhr~~i~~~fy~~l~mnv~ivsYRGYG~S~GspsE~GL~---lDs~ 134 (300)
T KOG4391|consen 58 ELRTRDKVTLDAYLMLSESSRPTLLYFHANAGNMGHRLPIARVFYVNLKMNVLIVSYRGYGKSEGSPSEEGLK---LDSE 134 (300)
T ss_pred EEEcCcceeEeeeeecccCCCceEEEEccCCCcccchhhHHHHHHHHcCceEEEEEeeccccCCCCcccccee---ccHH
Confidence 344457788774432 234889999999999999888877755 4568999999999999999876443332 2233
Q ss_pred HHHHHh------CCCcEEEEEechhHHHHHHHHhc-cCcccEEEEEcC
Q 008512 486 DFTVEV------VGEPVHLIGNSIGGMFLSTNLTR-GKLYAFLLSVNY 526 (563)
Q Consensus 486 ~~l~~l------~~~~i~lvGhS~Gg~ia~~~a~~-~~~~~~v~~~~~ 526 (563)
.+++.+ ...++++.|.|+||.+|+.+|++ .++..++++-+.
T Consensus 135 avldyl~t~~~~dktkivlfGrSlGGAvai~lask~~~ri~~~ivENT 182 (300)
T KOG4391|consen 135 AVLDYLMTRPDLDKTKIVLFGRSLGGAVAIHLASKNSDRISAIIVENT 182 (300)
T ss_pred HHHHHHhcCccCCcceEEEEecccCCeeEEEeeccchhheeeeeeech
Confidence 333333 34789999999999999999887 556666555444
No 86
>KOG1838 consensus Alpha/beta hydrolase [General function prediction only]
Probab=98.68 E-value=6.2e-07 Score=93.18 Aligned_cols=103 Identities=20% Similarity=0.234 Sum_probs=77.1
Q ss_pred CCCeEEEECCCCCCh-HHHH-HHHHHHhhCCCEEEEEcCCCCCCCCCCC-c---CCCHHHHHHHHHHHHHHhCCCcEEEE
Q 008512 426 EGPAILLVHGFGAFL-EHYR-DNIYDIADGGNRVWAITLLGFGRSEKPN-I---VYTELMWSELLRDFTVEVVGEPVHLI 499 (563)
Q Consensus 426 ~~~~vlllHG~~~~~-~~~~-~~~~~l~~~g~~Vi~~D~~G~G~S~~~~-~---~~~~~~~~~~l~~~l~~l~~~~i~lv 499 (563)
..|.||++||+.+++ +.|- .++..+.+.||+|++++.||+|.|.-.. . ....+|+.+.+..+.+.....+++.+
T Consensus 124 ~~P~vvilpGltg~S~~~YVr~lv~~a~~~G~r~VVfN~RG~~g~~LtTpr~f~ag~t~Dl~~~v~~i~~~~P~a~l~av 203 (409)
T KOG1838|consen 124 TDPIVVILPGLTGGSHESYVRHLVHEAQRKGYRVVVFNHRGLGGSKLTTPRLFTAGWTEDLREVVNHIKKRYPQAPLFAV 203 (409)
T ss_pred CCcEEEEecCCCCCChhHHHHHHHHHHHhCCcEEEEECCCCCCCCccCCCceeecCCHHHHHHHHHHHHHhCCCCceEEE
Confidence 358999999997653 4444 6777788889999999999999886533 1 22345555555555555667899999
Q ss_pred EechhHHHHHHHHhc----cCcccEEEEEcCcC
Q 008512 500 GNSIGGMFLSTNLTR----GKLYAFLLSVNYLL 528 (563)
Q Consensus 500 GhS~Gg~ia~~~a~~----~~~~~~v~~~~~~~ 528 (563)
|.||||.+..+|+.. .++.+++.+.++..
T Consensus 204 G~S~Gg~iL~nYLGE~g~~~~l~~a~~v~~Pwd 236 (409)
T KOG1838|consen 204 GFSMGGNILTNYLGEEGDNTPLIAAVAVCNPWD 236 (409)
T ss_pred EecchHHHHHHHhhhccCCCCceeEEEEeccch
Confidence 999999999999865 45677777777766
No 87
>PRK11460 putative hydrolase; Provisional
Probab=98.68 E-value=1.6e-07 Score=92.71 Aligned_cols=102 Identities=15% Similarity=0.029 Sum_probs=67.6
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHHhhCCCEEEEEcCCCCCCCCCC-----------CcCCC---HHHHHH----HHHHH
Q 008512 426 EGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKP-----------NIVYT---ELMWSE----LLRDF 487 (563)
Q Consensus 426 ~~~~vlllHG~~~~~~~~~~~~~~l~~~g~~Vi~~D~~G~G~S~~~-----------~~~~~---~~~~~~----~l~~~ 487 (563)
..+.||++||++++...|..+++.|...++.+..++++|...+... ..... +.+..+ .+..+
T Consensus 15 ~~~~vIlLHG~G~~~~~~~~l~~~l~~~~~~~~~i~~~g~~~~~~~~g~~W~~~~~~~~~~~~~~~~~~~~~l~~~i~~~ 94 (232)
T PRK11460 15 AQQLLLLFHGVGDNPVAMGEIGSWFAPAFPDALVVSVGGPEPSGNGAGRQWFSVQGITEDNRQARVAAIMPTFIETVRYW 94 (232)
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHCCCCEEECCCCCCCcCCCCCcccccCCCCCccchHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999876666666666665322110 00011 112222 22223
Q ss_pred HHHhCC--CcEEEEEechhHHHHHHHHhc-cCcccEEEEEcCc
Q 008512 488 TVEVVG--EPVHLIGNSIGGMFLSTNLTR-GKLYAFLLSVNYL 527 (563)
Q Consensus 488 l~~l~~--~~i~lvGhS~Gg~ia~~~a~~-~~~~~~v~~~~~~ 527 (563)
.++.+. ++++|+|||+||.+++.++.. ++..+.++..++.
T Consensus 95 ~~~~~~~~~~i~l~GfS~Gg~~al~~a~~~~~~~~~vv~~sg~ 137 (232)
T PRK11460 95 QQQSGVGASATALIGFSQGAIMALEAVKAEPGLAGRVIAFSGR 137 (232)
T ss_pred HHhcCCChhhEEEEEECHHHHHHHHHHHhCCCcceEEEEeccc
Confidence 333333 679999999999999998865 7777777666553
No 88
>KOG2565 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=98.63 E-value=1.5e-07 Score=94.88 Aligned_cols=108 Identities=19% Similarity=0.261 Sum_probs=89.6
Q ss_pred ECCeEEEEEEeCCC-------CCeEEEECCCCCChHHHHHHHHHHhhC---C------CEEEEEcCCCCCCCCCCC-cCC
Q 008512 413 WNGYQIQYTVAGKE-------GPAILLVHGFGAFLEHYRDNIYDIADG---G------NRVWAITLLGFGRSEKPN-IVY 475 (563)
Q Consensus 413 ~~g~~l~y~~~g~~-------~~~vlllHG~~~~~~~~~~~~~~l~~~---g------~~Vi~~D~~G~G~S~~~~-~~~ 475 (563)
+.|.+||+....++ --++|++|||+|+..+|.+++..|.+. | |+||++.+||+|.|+++. .++
T Consensus 131 IeGL~iHFlhvk~p~~k~~k~v~PlLl~HGwPGsv~EFykfIPlLT~p~~hg~~~d~~FEVI~PSlPGygwSd~~sk~GF 210 (469)
T KOG2565|consen 131 IEGLKIHFLHVKPPQKKKKKKVKPLLLLHGWPGSVREFYKFIPLLTDPKRHGNESDYAFEVIAPSLPGYGWSDAPSKTGF 210 (469)
T ss_pred hcceeEEEEEecCCccccCCcccceEEecCCCchHHHHHhhhhhhcCccccCCccceeEEEeccCCCCcccCcCCccCCc
Confidence 35666666544322 237999999999999999999999764 2 799999999999999875 678
Q ss_pred CHHHHHHHHHHHHHHhCCCcEEEEEechhHHHHHHHHhc-cCcccE
Q 008512 476 TELMWSELLRDFTVEVVGEPVHLIGNSIGGMFLSTNLTR-GKLYAF 520 (563)
Q Consensus 476 ~~~~~~~~l~~~l~~l~~~~i~lvGhS~Gg~ia~~~a~~-~~~~~~ 520 (563)
+....+..+..++-.++..+++|-|-.+|+.|+.++|.- |+.+.+
T Consensus 211 n~~a~ArvmrkLMlRLg~nkffiqGgDwGSiI~snlasLyPenV~G 256 (469)
T KOG2565|consen 211 NAAATARVMRKLMLRLGYNKFFIQGGDWGSIIGSNLASLYPENVLG 256 (469)
T ss_pred cHHHHHHHHHHHHHHhCcceeEeecCchHHHHHHHHHhhcchhhhH
Confidence 888899999999999999999999999999999999986 665544
No 89
>PRK07868 acyl-CoA synthetase; Validated
Probab=98.63 E-value=2.1e-07 Score=110.47 Aligned_cols=98 Identities=27% Similarity=0.353 Sum_probs=74.0
Q ss_pred CCCeEEEECCCCCChHHHHHH-----HHHHhhCCCEEEEEcCCCCCCCCCCCc--CCCHHHHHHHHHHHHHH---hCCCc
Q 008512 426 EGPAILLVHGFGAFLEHYRDN-----IYDIADGGNRVWAITLLGFGRSEKPNI--VYTELMWSELLRDFTVE---VVGEP 495 (563)
Q Consensus 426 ~~~~vlllHG~~~~~~~~~~~-----~~~l~~~g~~Vi~~D~~G~G~S~~~~~--~~~~~~~~~~l~~~l~~---l~~~~ 495 (563)
.+++|||+||++.+...|+.. ++.|.+.||+|+++| +|.++.+.. ..++.+++..+.+.++. +..++
T Consensus 66 ~~~plllvhg~~~~~~~~d~~~~~s~v~~L~~~g~~v~~~d---~G~~~~~~~~~~~~l~~~i~~l~~~l~~v~~~~~~~ 142 (994)
T PRK07868 66 VGPPVLMVHPMMMSADMWDVTRDDGAVGILHRAGLDPWVID---FGSPDKVEGGMERNLADHVVALSEAIDTVKDVTGRD 142 (994)
T ss_pred CCCcEEEECCCCCCccceecCCcccHHHHHHHCCCEEEEEc---CCCCChhHcCccCCHHHHHHHHHHHHHHHHHhhCCc
Confidence 368999999999999999854 889988899999999 466655432 35777776666666654 34578
Q ss_pred EEEEEechhHHHHHHHHh-c-cCcccEEEEEcC
Q 008512 496 VHLIGNSIGGMFLSTNLT-R-GKLYAFLLSVNY 526 (563)
Q Consensus 496 i~lvGhS~Gg~ia~~~a~-~-~~~~~~v~~~~~ 526 (563)
++++||||||.+++.++. + ++.++.++++..
T Consensus 143 v~lvG~s~GG~~a~~~aa~~~~~~v~~lvl~~~ 175 (994)
T PRK07868 143 VHLVGYSQGGMFCYQAAAYRRSKDIASIVTFGS 175 (994)
T ss_pred eEEEEEChhHHHHHHHHHhcCCCccceEEEEec
Confidence 999999999999988876 4 556666655333
No 90
>PF07819 PGAP1: PGAP1-like protein; InterPro: IPR012908 The sequences found in this family are similar to PGAP1 (Q765A7 from SWISSPROT). This is an endoplasmic reticulum membrane protein with a catalytic serine-containing motif that is conserved in a number of lipases. PGAP1 functions as a GPI inositol-deacylase; this deacylation is important for the efficient transport of GPI-anchored proteins from the endoplasmic reticulum to the Golgi body [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006505 GPI anchor metabolic process, 0006886 intracellular protein transport, 0031227 intrinsic to endoplasmic reticulum membrane
Probab=98.59 E-value=4.5e-07 Score=88.90 Aligned_cols=97 Identities=14% Similarity=0.171 Sum_probs=64.1
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHHhh--------CCCEEEEEcCCCCCCCCCCCcCCCHHHH----HHHHHHHHHHh--
Q 008512 426 EGPAILLVHGFGAFLEHYRDNIYDIAD--------GGNRVWAITLLGFGRSEKPNIVYTELMW----SELLRDFTVEV-- 491 (563)
Q Consensus 426 ~~~~vlllHG~~~~~~~~~~~~~~l~~--------~g~~Vi~~D~~G~G~S~~~~~~~~~~~~----~~~l~~~l~~l-- 491 (563)
.+.+||||||.+|+...+..+...+.+ ..++++++|+......-. ...+.+. .+.+..+++.+
T Consensus 3 ~g~pVlFIhG~~Gs~~q~rsl~~~~~~~~~~~~~~~~~d~ft~df~~~~s~~~---g~~l~~q~~~~~~~i~~i~~~~~~ 79 (225)
T PF07819_consen 3 SGIPVLFIHGNAGSYKQVRSLASELQRKALLNDNSSHFDFFTVDFNEELSAFH---GRTLQRQAEFLAEAIKYILELYKS 79 (225)
T ss_pred CCCEEEEECcCCCCHhHHHHHHHHHhhhhhhccCccceeEEEeccCccccccc---cccHHHHHHHHHHHHHHHHHhhhh
Confidence 467899999999998888877666522 257899999876532211 1223333 33444444444
Q ss_pred ---CCCcEEEEEechhHHHHHHHHhcc----CcccEEEEEc
Q 008512 492 ---VGEPVHLIGNSIGGMFLSTNLTRG----KLYAFLLSVN 525 (563)
Q Consensus 492 ---~~~~i~lvGhS~Gg~ia~~~a~~~----~~~~~v~~~~ 525 (563)
+..+++|+||||||.++..++..+ ..+..++.+.
T Consensus 80 ~~~~~~~vilVgHSmGGlvar~~l~~~~~~~~~v~~iitl~ 120 (225)
T PF07819_consen 80 NRPPPRSVILVGHSMGGLVARSALSLPNYDPDSVKTIITLG 120 (225)
T ss_pred ccCCCCceEEEEEchhhHHHHHHHhccccccccEEEEEEEc
Confidence 458899999999999998887652 3455555533
No 91
>PF10230 DUF2305: Uncharacterised conserved protein (DUF2305); InterPro: IPR019363 This entry contains proteins that have no known function.
Probab=98.55 E-value=6.6e-07 Score=90.09 Aligned_cols=99 Identities=21% Similarity=0.299 Sum_probs=80.4
Q ss_pred CeEEEECCCCCChHHHHHHHHHHhhC---CCEEEEEcCCCCCCCCCC------CcCCCHHHHHHHHHHHHHHhC------
Q 008512 428 PAILLVHGFGAFLEHYRDNIYDIADG---GNRVWAITLLGFGRSEKP------NIVYTELMWSELLRDFTVEVV------ 492 (563)
Q Consensus 428 ~~vlllHG~~~~~~~~~~~~~~l~~~---g~~Vi~~D~~G~G~S~~~------~~~~~~~~~~~~l~~~l~~l~------ 492 (563)
..||+|+|.+|-.+.|..+++.|.+. .+.|+++.+.||-.++.. ...++++++++...++++++.
T Consensus 3 ~li~~IPGNPGlv~fY~~Fl~~L~~~l~~~~~i~~ish~Gh~~~~~~~~~~~~~~~~sL~~QI~hk~~~i~~~~~~~~~~ 82 (266)
T PF10230_consen 3 PLIVFIPGNPGLVEFYEEFLSALYEKLNPQFEILGISHAGHSTSPSNSKFSPNGRLFSLQDQIEHKIDFIKELIPQKNKP 82 (266)
T ss_pred EEEEEECCCCChHHHHHHHHHHHHHhCCCCCeeEEecCCCCcCCcccccccCCCCccCHHHHHHHHHHHHHHHhhhhcCC
Confidence 46999999999999999999988743 799999999999777554 246899999998888887653
Q ss_pred CCcEEEEEechhHHHHHHHHhc-c----CcccEEEEEcC
Q 008512 493 GEPVHLIGNSIGGMFLSTNLTR-G----KLYAFLLSVNY 526 (563)
Q Consensus 493 ~~~i~lvGhS~Gg~ia~~~a~~-~----~~~~~v~~~~~ 526 (563)
..+++|+|||+|+++++..+.+ + .+.+.+++.|.
T Consensus 83 ~~~liLiGHSIGayi~levl~r~~~~~~~V~~~~lLfPT 121 (266)
T PF10230_consen 83 NVKLILIGHSIGAYIALEVLKRLPDLKFRVKKVILLFPT 121 (266)
T ss_pred CCcEEEEeCcHHHHHHHHHHHhccccCCceeEEEEeCCc
Confidence 3679999999999999999987 5 34445555544
No 92
>PRK10162 acetyl esterase; Provisional
Probab=98.52 E-value=1.5e-06 Score=89.93 Aligned_cols=85 Identities=15% Similarity=0.144 Sum_probs=61.4
Q ss_pred CCCeEEEECCCC---CChHHHHHHHHHHhh-CCCEEEEEcCCCCCCCCCCCcCCCHHHHHHH---HHHHHHHhCC--CcE
Q 008512 426 EGPAILLVHGFG---AFLEHYRDNIYDIAD-GGNRVWAITLLGFGRSEKPNIVYTELMWSEL---LRDFTVEVVG--EPV 496 (563)
Q Consensus 426 ~~~~vlllHG~~---~~~~~~~~~~~~l~~-~g~~Vi~~D~~G~G~S~~~~~~~~~~~~~~~---l~~~l~~l~~--~~i 496 (563)
..|+||++||.+ ++...+..++..|+. .|+.|+++|+|.......+ ..+++..+. +.+..++++. .+|
T Consensus 80 ~~p~vv~~HGGg~~~g~~~~~~~~~~~la~~~g~~Vv~vdYrlape~~~p---~~~~D~~~a~~~l~~~~~~~~~d~~~i 156 (318)
T PRK10162 80 SQATLFYLHGGGFILGNLDTHDRIMRLLASYSGCTVIGIDYTLSPEARFP---QAIEEIVAVCCYFHQHAEDYGINMSRI 156 (318)
T ss_pred CCCEEEEEeCCcccCCCchhhhHHHHHHHHHcCCEEEEecCCCCCCCCCC---CcHHHHHHHHHHHHHhHHHhCCChhHE
Confidence 357899999976 666778888888876 4999999999976543222 234444333 3333445554 689
Q ss_pred EEEEechhHHHHHHHHh
Q 008512 497 HLIGNSIGGMFLSTNLT 513 (563)
Q Consensus 497 ~lvGhS~Gg~ia~~~a~ 513 (563)
+|+|+|+||.+++.++.
T Consensus 157 ~l~G~SaGG~la~~~a~ 173 (318)
T PRK10162 157 GFAGDSAGAMLALASAL 173 (318)
T ss_pred EEEEECHHHHHHHHHHH
Confidence 99999999999988875
No 93
>COG2021 MET2 Homoserine acetyltransferase [Amino acid transport and metabolism]
Probab=98.52 E-value=5.1e-07 Score=92.17 Aligned_cols=123 Identities=19% Similarity=0.109 Sum_probs=89.1
Q ss_pred ECCeEEEEEEeCCC----CCeEEEECCCCCChHH-----------HHHHH---HHHhhCCCEEEEEcCCCCC-CCCCCC-
Q 008512 413 WNGYQIQYTVAGKE----GPAILLVHGFGAFLEH-----------YRDNI---YDIADGGNRVWAITLLGFG-RSEKPN- 472 (563)
Q Consensus 413 ~~g~~l~y~~~g~~----~~~vlllHG~~~~~~~-----------~~~~~---~~l~~~g~~Vi~~D~~G~G-~S~~~~- 472 (563)
..+..|.|..+|.- ..+||++||++++... |..++ +.+.-..|.||++|-.|.+ .|+++.
T Consensus 33 l~~~~vay~T~Gtln~~~~NaVli~HaLtG~~h~~~~~~~~~~GWW~~liGpG~~iDt~r~fvIc~NvlG~c~GStgP~s 112 (368)
T COG2021 33 LSDARVAYETYGTLNAEKDNAVLICHALTGDSHAAGTADDGEKGWWDDLIGPGKPIDTERFFVICTNVLGGCKGSTGPSS 112 (368)
T ss_pred ccCcEEEEEecccccccCCceEEEeccccCcccccccCCCCCCccHHHhcCCCCCCCccceEEEEecCCCCCCCCCCCCC
Confidence 35678899999842 4589999999985433 33332 1233345999999999875 444331
Q ss_pred ------------cCCCHHHHHHHHHHHHHHhCCCcEE-EEEechhHHHHHHHHhc-cCcccEEEEEcCcCChHHHHH
Q 008512 473 ------------IVYTELMWSELLRDFTVEVVGEPVH-LIGNSIGGMFLSTNLTR-GKLYAFLLSVNYLLSRSIICR 535 (563)
Q Consensus 473 ------------~~~~~~~~~~~l~~~l~~l~~~~i~-lvGhS~Gg~ia~~~a~~-~~~~~~v~~~~~~~~~~~~~~ 535 (563)
..+++.|+++.-..++++++++++. ++|-||||+.++.++.. |+++..++.+......+.+.-
T Consensus 113 ~~p~g~~yg~~FP~~ti~D~V~aq~~ll~~LGI~~l~avvGgSmGGMqaleWa~~yPd~V~~~i~ia~~~r~s~~~i 189 (368)
T COG2021 113 INPGGKPYGSDFPVITIRDMVRAQRLLLDALGIKKLAAVVGGSMGGMQALEWAIRYPDRVRRAIPIATAARLSAQNI 189 (368)
T ss_pred cCCCCCccccCCCcccHHHHHHHHHHHHHhcCcceEeeeeccChHHHHHHHHHHhChHHHhhhheecccccCCHHHH
Confidence 1357889988888899999999987 89999999999999987 888877776666554444433
No 94
>PF12715 Abhydrolase_7: Abhydrolase family; PDB: 3NUZ_C 3G8Y_A.
Probab=98.49 E-value=1.1e-05 Score=83.38 Aligned_cols=106 Identities=22% Similarity=0.161 Sum_probs=62.0
Q ss_pred CCeEEEECCCCCChHHH------------------HHHHHHHhhCCCEEEEEcCCCCCCCCCCC-----cCCCHHHHHH-
Q 008512 427 GPAILLVHGFGAFLEHY------------------RDNIYDIADGGNRVWAITLLGFGRSEKPN-----IVYTELMWSE- 482 (563)
Q Consensus 427 ~~~vlllHG~~~~~~~~------------------~~~~~~l~~~g~~Vi~~D~~G~G~S~~~~-----~~~~~~~~~~- 482 (563)
-|.||++||-+++.+.. ..+...|+++||-|+++|.+|+|+..... ..++.+.++.
T Consensus 115 ~PAVL~lHgHg~~Ke~~~g~~gv~~~~~~~~~~~~~~~g~~LAk~GYVvla~D~~g~GER~~~e~~~~~~~~~~~~la~~ 194 (390)
T PF12715_consen 115 FPAVLCLHGHGGGKEKMAGEDGVSPDLKDDYDDPKQDYGDQLAKRGYVVLAPDALGFGERGDMEGAAQGSNYDCQALARN 194 (390)
T ss_dssp EEEEEEE--TT--HHHHCT---SSGCG--STTSTTT-HHHHHHTTTSEEEEE--TTSGGG-SSCCCTTTTS--HHHHHHH
T ss_pred CCEEEEeCCCCCCcccccCCcccccccchhhccccccHHHHHHhCCCEEEEEccccccccccccccccccchhHHHHHHH
Confidence 46899999988765431 13577899999999999999999874421 1122222211
Q ss_pred --------------HHHHHHHHhC------CCcEEEEEechhHHHHHHHHhccCcccEEEEEcCcCChHH
Q 008512 483 --------------LLRDFTVEVV------GEPVHLIGNSIGGMFLSTNLTRGKLYAFLLSVNYLLSRSI 532 (563)
Q Consensus 483 --------------~l~~~l~~l~------~~~i~lvGhS~Gg~ia~~~a~~~~~~~~v~~~~~~~~~~~ 532 (563)
+....++.+. .++|.++|+||||..++.+++-.+.+++.+.+..++....
T Consensus 195 ~l~lG~S~~G~~~~ddmr~lDfL~slpeVD~~RIG~~GfSmGg~~a~~LaALDdRIka~v~~~~l~~~~~ 264 (390)
T PF12715_consen 195 LLMLGRSLAGLMAWDDMRALDFLASLPEVDPDRIGCMGFSMGGYRAWWLAALDDRIKATVANGYLCTTQE 264 (390)
T ss_dssp HHHTT--HHHHHHHHHHHHHHHHCT-TTEEEEEEEEEEEGGGHHHHHHHHHH-TT--EEEEES-B--HHH
T ss_pred HHHcCcCHHHHHHHHHHHHHHHHhcCcccCccceEEEeecccHHHHHHHHHcchhhHhHhhhhhhhccch
Confidence 1222333332 2789999999999999999988777788777777764443
No 95
>PF00151 Lipase: Lipase; InterPro: IPR013818 Triglyceride lipases (3.1.1.3 from EC) are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. At least three tissue-specific isozymes exist in higher vertebrates, pancreatic, hepatic and gastric/lingual. These lipases are closely related to each other and to lipoprotein lipase (3.1.1.34 from EC), which hydrolyses triglycerides of chylomicrons and very low density lipoproteins (VLDL) []. The most conserved region in all these proteins is centred around a serine residue which has been shown [] to participate, with an histidine and an aspartic acid residue, in a charge relay system. Such a region is also present in lipases of prokaryotic origin and in lecithin-cholesterol acyltransferase (2.3.1.43 from EC) (LCAT) [], which catalyzes fatty acid transfer between phosphatidylcholine and cholesterol.; PDB: 1LPB_B 1LPA_B 1N8S_A 1GPL_A 1W52_X 2PVS_B 2OXE_B 1BU8_A 2PPL_A 1ETH_A ....
Probab=98.47 E-value=6.1e-08 Score=100.23 Aligned_cols=137 Identities=16% Similarity=0.209 Sum_probs=79.4
Q ss_pred CCCeEEEECCCCCCh--HHHH-HHHHHHhh---CCCEEEEEcCCCCCCCCCCCcCCCHHHHHHHHHHHHH----HhC--C
Q 008512 426 EGPAILLVHGFGAFL--EHYR-DNIYDIAD---GGNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFTV----EVV--G 493 (563)
Q Consensus 426 ~~~~vlllHG~~~~~--~~~~-~~~~~l~~---~g~~Vi~~D~~G~G~S~~~~~~~~~~~~~~~l~~~l~----~l~--~ 493 (563)
.+|++|++|||.++. ..|. .+.+.+.+ .+++|+++|+...................+.+..++. ..+ .
T Consensus 70 ~~pt~iiiHGw~~~~~~~~~~~~~~~all~~~~~d~NVI~VDWs~~a~~~Y~~a~~n~~~vg~~la~~l~~L~~~~g~~~ 149 (331)
T PF00151_consen 70 SKPTVIIIHGWTGSGSSESWIQDMIKALLQKDTGDYNVIVVDWSRGASNNYPQAVANTRLVGRQLAKFLSFLINNFGVPP 149 (331)
T ss_dssp TSEEEEEE--TT-TT-TTTHHHHHHHHHHCC--S-EEEEEEE-HHHHSS-HHHHHHHHHHHHHHHHHHHHHHHHHH---G
T ss_pred CCCeEEEEcCcCCcccchhHHHHHHHHHHhhccCCceEEEEcchhhccccccchhhhHHHHHHHHHHHHHHHHhhcCCCh
Confidence 478999999998876 3344 56665544 4899999999633221100000112223333333333 333 4
Q ss_pred CcEEEEEechhHHHHHHHHhc-cC--cccEEEEEcCcCC--------------------------------------hHH
Q 008512 494 EPVHLIGNSIGGMFLSTNLTR-GK--LYAFLLSVNYLLS--------------------------------------RSI 532 (563)
Q Consensus 494 ~~i~lvGhS~Gg~ia~~~a~~-~~--~~~~v~~~~~~~~--------------------------------------~~~ 532 (563)
++++|||||+||++|..+... .. .+..|....+..+ ...
T Consensus 150 ~~ihlIGhSLGAHvaG~aG~~~~~~~ki~rItgLDPAgP~F~~~~~~~rL~~~DA~fVdvIHT~~~~~~~~~~G~~~~~G 229 (331)
T PF00151_consen 150 ENIHLIGHSLGAHVAGFAGKYLKGGGKIGRITGLDPAGPLFENNPPSERLDKSDAKFVDVIHTNAGTLPGGGLGTSEPIG 229 (331)
T ss_dssp GGEEEEEETCHHHHHHHHHHHTTT---SSEEEEES-B-TTTTTS-TTTS--GGGSSEEEEE-SSES-HHH-SSBESS--S
T ss_pred hHEEEEeeccchhhhhhhhhhccCcceeeEEEecCcccccccCCChhHhhhccCCceEEEEEcCCccccCCccccccccc
Confidence 889999999999999998876 33 5666666444222 122
Q ss_pred HHHHhhhcCCCCCCCCCCcc-------chhhhhhhcc
Q 008512 533 ICRLFCCHCCLSLACGGQVC-------CPYQQCWQCY 562 (563)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~ 562 (563)
-.+.+.|.|..||+|..... |.|..-|.||
T Consensus 230 h~DFYpNgG~~QPGC~~~~~~~~~~~~CsH~ra~~~f 266 (331)
T PF00151_consen 230 HVDFYPNGGRRQPGCGNDSLELTRFISCSHMRAVEYF 266 (331)
T ss_dssp SEEEEETTTTS-TTSSS-CHTTCSHHHHHHHHHHHHH
T ss_pred cceeecCCCccCCCCccccccceecchhhhHHHHHHH
Confidence 23456677899999998875 9999999988
No 96
>KOG4667 consensus Predicted esterase [Lipid transport and metabolism]
Probab=98.47 E-value=1.3e-06 Score=82.34 Aligned_cols=98 Identities=14% Similarity=0.166 Sum_probs=75.0
Q ss_pred CCCeEEEECCCCCChH--HHHHHHHHHhhCCCEEEEEcCCCCCCCCCCCcCCCHHHHHHHHHHHHHHhCCCc---EEEEE
Q 008512 426 EGPAILLVHGFGAFLE--HYRDNIYDIADGGNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFTVEVVGEP---VHLIG 500 (563)
Q Consensus 426 ~~~~vlllHG~~~~~~--~~~~~~~~l~~~g~~Vi~~D~~G~G~S~~~~~~~~~~~~~~~l~~~l~~l~~~~---i~lvG 500 (563)
+...+|++||+-++.. ....++..|.+.|+.++.||++|.|.|.+.-..-.....++|+..+++.+.... -+++|
T Consensus 32 s~e~vvlcHGfrS~Kn~~~~~~vA~~~e~~gis~fRfDF~GnGeS~gsf~~Gn~~~eadDL~sV~q~~s~~nr~v~vi~g 111 (269)
T KOG4667|consen 32 STEIVVLCHGFRSHKNAIIMKNVAKALEKEGISAFRFDFSGNGESEGSFYYGNYNTEADDLHSVIQYFSNSNRVVPVILG 111 (269)
T ss_pred CceEEEEeeccccccchHHHHHHHHHHHhcCceEEEEEecCCCCcCCccccCcccchHHHHHHHHHHhccCceEEEEEEe
Confidence 4568999999988754 445778899999999999999999999886432223334599999999987643 35689
Q ss_pred echhHHHHHHHHhc-cCcccEEEEE
Q 008512 501 NSIGGMFLSTNLTR-GKLYAFLLSV 524 (563)
Q Consensus 501 hS~Gg~ia~~~a~~-~~~~~~v~~~ 524 (563)
||-||.+++.++.. .. +..++-.
T Consensus 112 HSkGg~Vvl~ya~K~~d-~~~viNc 135 (269)
T KOG4667|consen 112 HSKGGDVVLLYASKYHD-IRNVINC 135 (269)
T ss_pred ecCccHHHHHHHHhhcC-chheEEc
Confidence 99999999999987 44 3344433
No 97
>PF06500 DUF1100: Alpha/beta hydrolase of unknown function (DUF1100); InterPro: IPR010520 Proteins in this entry display esterase activity toward pNP-butyrate []. This entry also includes 2,6-dihydropseudooxynicotine hydrolase which has a role in nicotine catabolism by cleaving a C-C bond in 2,6-dihydroxypseudooxyicotine [, ].; PDB: 3OUR_A 3MVE_B 2JBW_C.
Probab=98.47 E-value=2.6e-06 Score=89.19 Aligned_cols=170 Identities=15% Similarity=0.075 Sum_probs=95.5
Q ss_pred chhHHHHHHHHhhhhhccCccCCCCCChHHHHHHhhhhcchhHHHHHhhhccCCCCCCeeEEEEEECCeEEEEE-EeCCC
Q 008512 348 SRRGVHYEAIKFEKERNAGFLSPFGYSAATIAAAADAVCSMEWYWLMSLRSLRSNEGVYSTRIWRWNGYQIQYT-VAGKE 426 (563)
Q Consensus 348 S~R~v~~~~~~~~~~~~~~~~~~~g~~~~~ia~a~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~g~~l~y~-~~g~~ 426 (563)
++++.|.++..|..- +.|.-.-+....+-+... +...+ .+.... ....++.-.+.+.|.+|... ...+.
T Consensus 117 ~A~~~ylrAa~~Y~i--A~yP~~~~D~l~~qa~~~-a~~ay--~~Aa~l-----~~~~i~~v~iP~eg~~I~g~LhlP~~ 186 (411)
T PF06500_consen 117 SAAEAYLRAANYYRI--ARYPHLKGDELAEQAQEL-ANRAY--EKAAKL-----SDYPIEEVEIPFEGKTIPGYLHLPSG 186 (411)
T ss_dssp HHHHHHHHHHHHHHH--HCTT-TTTSCHHHHHHHH-HHHHH--HHHHHH-----SSSEEEEEEEEETTCEEEEEEEESSS
T ss_pred HHHHHHHHHHHHHHH--HhCCCCCCcHHHHHHHHH-HHHHH--HHHHHh-----CCCCcEEEEEeeCCcEEEEEEEcCCC
Confidence 888888887666532 333333344444332221 11111 221111 13445555666677766533 22222
Q ss_pred ---CCeEEEECCCCCChHHHHHH-HHHHhhCCCEEEEEcCCCCCCCCCCCcCCCHHHHHHHHHHHHHHhCC---CcEEEE
Q 008512 427 ---GPAILLVHGFGAFLEHYRDN-IYDIADGGNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFTVEVVG---EPVHLI 499 (563)
Q Consensus 427 ---~~~vlllHG~~~~~~~~~~~-~~~l~~~g~~Vi~~D~~G~G~S~~~~~~~~~~~~~~~l~~~l~~l~~---~~i~lv 499 (563)
.|+||++-|+-+..+++..+ .+.|+..|+.++++|+||.|.|..-....+.+.+...+.+.+..... .+|.++
T Consensus 187 ~~p~P~VIv~gGlDs~qeD~~~l~~~~l~~rGiA~LtvDmPG~G~s~~~~l~~D~~~l~~aVLd~L~~~p~VD~~RV~~~ 266 (411)
T PF06500_consen 187 EKPYPTVIVCGGLDSLQEDLYRLFRDYLAPRGIAMLTVDMPGQGESPKWPLTQDSSRLHQAVLDYLASRPWVDHTRVGAW 266 (411)
T ss_dssp SS-EEEEEEE--TTS-GGGGHHHHHCCCHHCT-EEEEE--TTSGGGTTT-S-S-CCHHHHHHHHHHHHSTTEEEEEEEEE
T ss_pred CCCCCEEEEeCCcchhHHHHHHHHHHHHHhCCCEEEEEccCCCcccccCCCCcCHHHHHHHHHHHHhcCCccChhheEEE
Confidence 35677777776667665544 56788899999999999999986432222223344455555555543 689999
Q ss_pred EechhHHHHHHHHh-ccCcccEEEEEcCc
Q 008512 500 GNSIGGMFLSTNLT-RGKLYAFLLSVNYL 527 (563)
Q Consensus 500 GhS~Gg~ia~~~a~-~~~~~~~v~~~~~~ 527 (563)
|.|+||++|..+|. .++++++++...+.
T Consensus 267 G~SfGGy~AvRlA~le~~RlkavV~~Ga~ 295 (411)
T PF06500_consen 267 GFSFGGYYAVRLAALEDPRLKAVVALGAP 295 (411)
T ss_dssp EETHHHHHHHHHHHHTTTT-SEEEEES--
T ss_pred EeccchHHHHHHHHhcccceeeEeeeCch
Confidence 99999999999986 46777887776663
No 98
>PF01674 Lipase_2: Lipase (class 2); InterPro: IPR002918 Lipases or triacylglycerol acylhydrolases hydrolyse ester bonds in triacylglycerol giving diacylglycerol, monoacylglycerol, glycerol and free fatty acids []. This group of lipases has been called class 2 as they are not clearly related to other lipase families, and includes LipA and LipB from Bacillus subtilis [] and uncharacterised proteins from Caenorhabditis.; PDB: 2VTV_B 2X76_A 2X5X_A 2QXU_A 3QMM_A 1I6W_A 3D2C_J 2QXT_B 1R50_A 1T2N_A ....
Probab=98.43 E-value=1.6e-07 Score=91.05 Aligned_cols=86 Identities=17% Similarity=0.220 Sum_probs=55.3
Q ss_pred CeEEEECCCCC-ChHHHHHHHHHHhhCCCE---EEEEcCCCCCCCCCCC-cC---CCHHHHHHHHHHHHHHhCCCcEEEE
Q 008512 428 PAILLVHGFGA-FLEHYRDNIYDIADGGNR---VWAITLLGFGRSEKPN-IV---YTELMWSELLRDFTVEVVGEPVHLI 499 (563)
Q Consensus 428 ~~vlllHG~~~-~~~~~~~~~~~l~~~g~~---Vi~~D~~G~G~S~~~~-~~---~~~~~~~~~l~~~l~~l~~~~i~lv 499 (563)
.||||+||.++ ....|..+++.|.++||. |+++++-....+.... .. -+..++.+.|..++...+. +|.||
T Consensus 2 ~PVVlVHG~~~~~~~~w~~~~~~l~~~GY~~~~vya~tyg~~~~~~~~~~~~~~~~~~~~l~~fI~~Vl~~TGa-kVDIV 80 (219)
T PF01674_consen 2 RPVVLVHGTGGNAYSNWSTLAPYLKAAGYCDSEVYALTYGSGNGSPSVQNAHMSCESAKQLRAFIDAVLAYTGA-KVDIV 80 (219)
T ss_dssp --EEEE--TTTTTCGGCCHHHHHHHHTT--CCCEEEE--S-CCHHTHHHHHHB-HHHHHHHHHHHHHHHHHHT---EEEE
T ss_pred CCEEEECCCCcchhhCHHHHHHHHHHcCCCcceeEeccCCCCCCCCcccccccchhhHHHHHHHHHHHHHhhCC-EEEEE
Confidence 47999999998 678999999999999999 8999984333211111 01 1123556666666677788 99999
Q ss_pred EechhHHHHHHHHhc
Q 008512 500 GNSIGGMFLSTNLTR 514 (563)
Q Consensus 500 GhS~Gg~ia~~~a~~ 514 (563)
||||||.++..+.+.
T Consensus 81 gHS~G~~iaR~yi~~ 95 (219)
T PF01674_consen 81 GHSMGGTIARYYIKG 95 (219)
T ss_dssp EETCHHHHHHHHHHH
T ss_pred EcCCcCHHHHHHHHH
Confidence 999999999998864
No 99
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=98.42 E-value=1.6e-06 Score=97.78 Aligned_cols=120 Identities=17% Similarity=0.074 Sum_probs=84.5
Q ss_pred EEEEEECCeEEEEEEeCCC--C-----CeEEEECCCCCChH--HHHHHHHHHhhCCCEEEEEcCCCCCC---C--C---C
Q 008512 408 TRIWRWNGYQIQYTVAGKE--G-----PAILLVHGFGAFLE--HYRDNIYDIADGGNRVWAITLLGFGR---S--E---K 470 (563)
Q Consensus 408 ~~~~~~~g~~l~y~~~g~~--~-----~~vlllHG~~~~~~--~~~~~~~~l~~~g~~Vi~~D~~G~G~---S--~---~ 470 (563)
+++-..+|.+++.....+. + |.||++||.+.... .|......|+..||.|+.+|+||-+. . . +
T Consensus 368 ~~~~~~dG~~i~~~l~~P~~~~~~k~yP~i~~~hGGP~~~~~~~~~~~~q~~~~~G~~V~~~n~RGS~GyG~~F~~~~~~ 447 (620)
T COG1506 368 VTYKSNDGETIHGWLYKPPGFDPRKKYPLIVYIHGGPSAQVGYSFNPEIQVLASAGYAVLAPNYRGSTGYGREFADAIRG 447 (620)
T ss_pred EEEEcCCCCEEEEEEecCCCCCCCCCCCEEEEeCCCCccccccccchhhHHHhcCCeEEEEeCCCCCCccHHHHHHhhhh
Confidence 4445558888887766542 2 68999999975443 46677888999999999999997533 2 1 1
Q ss_pred CCcCCCHHHHHHHHHHHHHHhCC---CcEEEEEechhHHHHHHHHhc-cCcccEEEEEcCcC
Q 008512 471 PNIVYTELMWSELLRDFTVEVVG---EPVHLIGNSIGGMFLSTNLTR-GKLYAFLLSVNYLL 528 (563)
Q Consensus 471 ~~~~~~~~~~~~~l~~~l~~l~~---~~i~lvGhS~Gg~ia~~~a~~-~~~~~~v~~~~~~~ 528 (563)
.......+|+.+.+. ++.+.+. +++.|+|+|+||++++..+.+ +...++++..+...
T Consensus 448 ~~g~~~~~D~~~~~~-~l~~~~~~d~~ri~i~G~SyGGymtl~~~~~~~~f~a~~~~~~~~~ 508 (620)
T COG1506 448 DWGGVDLEDLIAAVD-ALVKLPLVDPERIGITGGSYGGYMTLLAATKTPRFKAAVAVAGGVD 508 (620)
T ss_pred ccCCccHHHHHHHHH-HHHhCCCcChHHeEEeccChHHHHHHHHHhcCchhheEEeccCcch
Confidence 223456777777777 5555543 589999999999999999988 54444445444443
No 100
>PF02273 Acyl_transf_2: Acyl transferase; InterPro: IPR003157 LuxD proteins are bacterial acyl transferases. Together with an acyl-protein synthetase (LuxE) and reductase (LuxC), they form a multienzyme complex. This complex channels activated fatty acids into the aldehyde substrate for the luciferase-catalyzed bacterial bioluminescence reaction [, ]. ; GO: 0016746 transferase activity, transferring acyl groups, 0006631 fatty acid metabolic process; PDB: 1THT_B.
Probab=98.41 E-value=3.6e-06 Score=80.88 Aligned_cols=137 Identities=16% Similarity=0.110 Sum_probs=80.3
Q ss_pred EEEEE-CCeEEEEEEeCCC------CCeEEEECCCCCChHHHHHHHHHHhhCCCEEEEEcCCCC-CCCCCCCcCCCHHHH
Q 008512 409 RIWRW-NGYQIQYTVAGKE------GPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGF-GRSEKPNIVYTELMW 480 (563)
Q Consensus 409 ~~~~~-~g~~l~y~~~g~~------~~~vlllHG~~~~~~~~~~~~~~l~~~g~~Vi~~D~~G~-G~S~~~~~~~~~~~~ 480 (563)
+.+.. +|.+|+.....|. .++||+.+||+.....|..++.+|+..||+|+.+|..-| |.|++.-..+++...
T Consensus 5 hvi~~~~~~~I~vwet~P~~~~~~~~~tiliA~Gf~rrmdh~agLA~YL~~NGFhViRyDsl~HvGlSsG~I~eftms~g 84 (294)
T PF02273_consen 5 HVIRLEDGRQIRVWETRPKNNEPKRNNTILIAPGFARRMDHFAGLAEYLSANGFHVIRYDSLNHVGLSSGDINEFTMSIG 84 (294)
T ss_dssp EEEEETTTEEEEEEEE---TTS---S-EEEEE-TT-GGGGGGHHHHHHHHTTT--EEEE---B-------------HHHH
T ss_pred ceeEcCCCCEEEEeccCCCCCCcccCCeEEEecchhHHHHHHHHHHHHHhhCCeEEEeccccccccCCCCChhhcchHHh
Confidence 34444 5667776655432 468999999999999999999999999999999998876 999998888999888
Q ss_pred HHHHHHHHHHh---CCCcEEEEEechhHHHHHHHHhccCcccEEEEEcCcCChHHHHHHhhhcCCCCC
Q 008512 481 SELLRDFTVEV---VGEPVHLIGNSIGGMFLSTNLTRGKLYAFLLSVNYLLSRSIICRLFCCHCCLSL 545 (563)
Q Consensus 481 ~~~l~~~l~~l---~~~~i~lvGhS~Gg~ia~~~a~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 545 (563)
.+++..+++.+ +..++.|+.-|+.|-+|+..|.+..+.-.+..+.-+..+....+.++.-.+..+
T Consensus 85 ~~sL~~V~dwl~~~g~~~~GLIAaSLSaRIAy~Va~~i~lsfLitaVGVVnlr~TLe~al~~Dyl~~~ 152 (294)
T PF02273_consen 85 KASLLTVIDWLATRGIRRIGLIAASLSARIAYEVAADINLSFLITAVGVVNLRDTLEKALGYDYLQLP 152 (294)
T ss_dssp HHHHHHHHHHHHHTT---EEEEEETTHHHHHHHHTTTS--SEEEEES--S-HHHHHHHHHSS-GGGS-
T ss_pred HHHHHHHHHHHHhcCCCcchhhhhhhhHHHHHHHhhccCcceEEEEeeeeeHHHHHHHHhccchhhcc
Confidence 88877776554 678899999999999999999987644444444445555666666555444433
No 101
>COG3208 GrsT Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.40 E-value=1.7e-06 Score=83.62 Aligned_cols=87 Identities=16% Similarity=0.182 Sum_probs=76.7
Q ss_pred CCeEEEECCCCCChHHHHHHHHHHhhCCCEEEEEcCCCCCCCCCCCcCCCHHHHHHHHHHHHH-HhCCCcEEEEEechhH
Q 008512 427 GPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFTV-EVVGEPVHLIGNSIGG 505 (563)
Q Consensus 427 ~~~vlllHG~~~~~~~~~~~~~~l~~~g~~Vi~~D~~G~G~S~~~~~~~~~~~~~~~l~~~l~-~l~~~~i~lvGhS~Gg 505 (563)
+..++++|-.||++..|..+...|.. ...++++++||+|.--+.+...+++.+++.+..-+. -....++.++||||||
T Consensus 7 ~~~L~cfP~AGGsa~~fr~W~~~lp~-~iel~avqlPGR~~r~~ep~~~di~~Lad~la~el~~~~~d~P~alfGHSmGa 85 (244)
T COG3208 7 RLRLFCFPHAGGSASLFRSWSRRLPA-DIELLAVQLPGRGDRFGEPLLTDIESLADELANELLPPLLDAPFALFGHSMGA 85 (244)
T ss_pred CceEEEecCCCCCHHHHHHHHhhCCc-hhheeeecCCCcccccCCcccccHHHHHHHHHHHhccccCCCCeeecccchhH
Confidence 55799999999999999999998877 599999999999987666667889999998888887 4667899999999999
Q ss_pred HHHHHHHhc
Q 008512 506 MFLSTNLTR 514 (563)
Q Consensus 506 ~ia~~~a~~ 514 (563)
++|..+|.+
T Consensus 86 ~lAfEvArr 94 (244)
T COG3208 86 MLAFEVARR 94 (244)
T ss_pred HHHHHHHHH
Confidence 999999865
No 102
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=98.37 E-value=3e-06 Score=80.41 Aligned_cols=98 Identities=21% Similarity=0.175 Sum_probs=71.2
Q ss_pred EEEECCCCCChHHHH--HHHHHHhhCC--CEEEEEcCCCCCCCCCCCcCCCHHHHHHHHHHHHHHhCCCcEEEEEechhH
Q 008512 430 ILLVHGFGAFLEHYR--DNIYDIADGG--NRVWAITLLGFGRSEKPNIVYTELMWSELLRDFTVEVVGEPVHLIGNSIGG 505 (563)
Q Consensus 430 vlllHG~~~~~~~~~--~~~~~l~~~g--~~Vi~~D~~G~G~S~~~~~~~~~~~~~~~l~~~l~~l~~~~i~lvGhS~Gg 505 (563)
||++||+.++..... .+.+.+.+.+ ..+.++|++ .......+.+.+++++.....+.|+|+||||
T Consensus 2 ilYlHGF~Ssp~S~Ka~~l~~~~~~~~~~~~~~~p~l~-----------~~p~~a~~~l~~~i~~~~~~~~~liGSSlGG 70 (187)
T PF05728_consen 2 ILYLHGFNSSPQSFKAQALKQYFAEHGPDIQYPCPDLP-----------PFPEEAIAQLEQLIEELKPENVVLIGSSLGG 70 (187)
T ss_pred eEEecCCCCCCCCHHHHHHHHHHHHhCCCceEECCCCC-----------cCHHHHHHHHHHHHHhCCCCCeEEEEEChHH
Confidence 799999998876655 4456666644 456666665 3455667788889988887789999999999
Q ss_pred HHHHHHHhccCcccEEEEEcCcCChHHHHHHhhh
Q 008512 506 MFLSTNLTRGKLYAFLLSVNYLLSRSIICRLFCC 539 (563)
Q Consensus 506 ~ia~~~a~~~~~~~~v~~~~~~~~~~~~~~~~~~ 539 (563)
..|..++.+-... .+++-|.+.+...+.+.+..
T Consensus 71 ~~A~~La~~~~~~-avLiNPav~p~~~l~~~iG~ 103 (187)
T PF05728_consen 71 FYATYLAERYGLP-AVLINPAVRPYELLQDYIGE 103 (187)
T ss_pred HHHHHHHHHhCCC-EEEEcCCCCHHHHHHHhhCc
Confidence 9999998875433 36666666666666655444
No 103
>PF03096 Ndr: Ndr family; InterPro: IPR004142 This family consists of proteins from different gene families: Ndr1/RTP/Drg1, Ndr2, and Ndr3. Their similarity was previously noted []. The precise molecular and cellular function of members of this family is still unknown, yet they are known to be involved in cellular differentiation events. The Ndr1 group was the first to be discovered. Their expression is repressed by the proto-oncogenes N-myc and c-myc, and in line with this observation, Ndr1 protein expression is down-regulated in neoplastic cells, and is reactivated when differentiation is induced by chemicals such as retinoic acid. Ndr2 and Ndr3 expression is not under the control of N-myc or c-myc. Ndr1 expression is also activated by several chemicals: tunicamycin and homocysteine induce Ndr1 in human umbilical endothelial cells; nickel induces Ndr1 in several cell types. Members of this family are found in wide variety of multicellular eukaryotes, including an Ndr1 type protein in Helianthus annuus (Common sunflower), known as Sf21. Interestingly, the highest scoring matches in the noise are all alpha/beta hydrolases (IPR000073 from INTERPRO), suggesting that this family may have an enzymatic function.; PDB: 2QMQ_A 2XMR_B 2XMQ_B 2XMS_A.
Probab=98.34 E-value=1.2e-05 Score=80.18 Aligned_cols=154 Identities=17% Similarity=0.124 Sum_probs=102.4
Q ss_pred EEEEECCeEEEEEEeCCC---CCeEEEECCCCCChHH-HHHH-----HHHHhhCCCEEEEEcCCCCCCCCC--CC--cCC
Q 008512 409 RIWRWNGYQIQYTVAGKE---GPAILLVHGFGAFLEH-YRDN-----IYDIADGGNRVWAITLLGFGRSEK--PN--IVY 475 (563)
Q Consensus 409 ~~~~~~g~~l~y~~~g~~---~~~vlllHG~~~~~~~-~~~~-----~~~l~~~g~~Vi~~D~~G~G~S~~--~~--~~~ 475 (563)
+.++..-..++....|.. +|++|=.|-.|.+... |..+ +..+.+ .|.|+=+|.|||..-.. +. ...
T Consensus 2 h~v~t~~G~v~V~v~G~~~~~kp~ilT~HDvGlNh~scF~~ff~~~~m~~i~~-~f~i~Hi~aPGqe~ga~~~p~~y~yP 80 (283)
T PF03096_consen 2 HDVETPYGSVHVTVQGDPKGNKPAILTYHDVGLNHKSCFQGFFNFEDMQEILQ-NFCIYHIDAPGQEEGAATLPEGYQYP 80 (283)
T ss_dssp EEEEETTEEEEEEEESS--TTS-EEEEE--TT--HHHHCHHHHCSHHHHHHHT-TSEEEEEE-TTTSTT-----TT----
T ss_pred ceeccCceEEEEEEEecCCCCCceEEEeccccccchHHHHHHhcchhHHHHhh-ceEEEEEeCCCCCCCccccccccccc
Confidence 345666778888888753 7899999999987655 6654 445555 69999999999965432 22 245
Q ss_pred CHHHHHHHHHHHHHHhCCCcEEEEEechhHHHHHHHHhc-cCcccEEEEEcCcCChHHHHHHhhhcCC--CCCCCCCCcc
Q 008512 476 TELMWSELLRDFTVEVVGEPVHLIGNSIGGMFLSTNLTR-GKLYAFLLSVNYLLSRSIICRLFCCHCC--LSLACGGQVC 552 (563)
Q Consensus 476 ~~~~~~~~l~~~l~~l~~~~i~lvGhS~Gg~ia~~~a~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 552 (563)
+++++++++.+++++++.+.++-+|--.|+.|...+|.. |+++.+++++++.....+|.+.+.+.-+ .-..+|.+-.
T Consensus 81 smd~LAe~l~~Vl~~f~lk~vIg~GvGAGAnIL~rfAl~~p~~V~GLiLvn~~~~~~gw~Ew~~~K~~~~~L~~~gmt~~ 160 (283)
T PF03096_consen 81 SMDQLAEMLPEVLDHFGLKSVIGFGVGAGANILARFALKHPERVLGLILVNPTCTAAGWMEWFYQKLSSWLLYSYGMTSS 160 (283)
T ss_dssp -HHHHHCTHHHHHHHHT---EEEEEETHHHHHHHHHHHHSGGGEEEEEEES---S---HHHHHHHHHH-------CTTS-
T ss_pred CHHHHHHHHHHHHHhCCccEEEEEeeccchhhhhhccccCccceeEEEEEecCCCCccHHHHHHHHHhcccccccccccc
Confidence 899999999999999999999999999999999999987 9999999999999998888877766633 3455777778
Q ss_pred chhhhhhhccC
Q 008512 553 CPYQQCWQCYS 563 (563)
Q Consensus 553 ~~~~~~~~~~~ 563 (563)
.+=++-|.|||
T Consensus 161 ~~d~Ll~h~Fg 171 (283)
T PF03096_consen 161 VKDYLLWHYFG 171 (283)
T ss_dssp HHHHHHHHHS-
T ss_pred hHHhhhhcccc
Confidence 88888888885
No 104
>PF05448 AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR008391 This family consists of several bacterial acetyl xylan esterase proteins. Acetyl xylan esterases are enzymes that hydrolyse the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan [].; PDB: 1VLQ_H 3M81_E 3M82_D 3M83_C 3FCY_A 1ODS_F 1ODT_C 1L7A_A 3FYT_A 2XLB_F ....
Probab=98.34 E-value=3.8e-06 Score=86.70 Aligned_cols=163 Identities=17% Similarity=0.069 Sum_probs=89.2
Q ss_pred CCCCChHHHHHHhhhhcchhHHHHHhhhccCCCCCCeeEEEEEECCeEEEEEEeCC---C--CCeEEEECCCCCChHHHH
Q 008512 370 PFGYSAATIAAAADAVCSMEWYWLMSLRSLRSNEGVYSTRIWRWNGYQIQYTVAGK---E--GPAILLVHGFGAFLEHYR 444 (563)
Q Consensus 370 ~~g~~~~~ia~a~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~g~~l~y~~~g~---~--~~~vlllHG~~~~~~~~~ 444 (563)
|=++..+|-..-.+....+.-+.+...........-+.++|-..+|..|+-...-+ . -|.||.+||+++....+.
T Consensus 21 P~DFd~FW~~~l~e~~~~p~~~~l~~~~~~~~~~~vy~v~f~s~~g~~V~g~l~~P~~~~~~~Pavv~~hGyg~~~~~~~ 100 (320)
T PF05448_consen 21 PADFDAFWKKTLAELAAVPLDPELEPVEFPTPGVEVYDVSFESFDGSRVYGWLYRPKNAKGKLPAVVQFHGYGGRSGDPF 100 (320)
T ss_dssp -TTHHHHHHHHHHHHHTS----EEEEES-SBSSEEEEEEEEEEGGGEEEEEEEEEES-SSSSEEEEEEE--TT--GGGHH
T ss_pred CccHHHHHHHHHHHHhcCCCCcEEEEeccCCCCEEEEEEEEEccCCCEEEEEEEecCCCCCCcCEEEEecCCCCCCCCcc
Confidence 34567888877776655544333222211111122344556666888887433221 2 357999999999987776
Q ss_pred HHHHHHhhCCCEEEEEcCCCCCC-CCCCC-------cC------CC------HHHHHHHHHHHHHHh---C---CCcEEE
Q 008512 445 DNIYDIADGGNRVWAITLLGFGR-SEKPN-------IV------YT------ELMWSELLRDFTVEV---V---GEPVHL 498 (563)
Q Consensus 445 ~~~~~l~~~g~~Vi~~D~~G~G~-S~~~~-------~~------~~------~~~~~~~l~~~l~~l---~---~~~i~l 498 (563)
..+. ++..||-|+.+|.||+|. +.... .. .+ +..+..|....++.+ . .++|.+
T Consensus 101 ~~~~-~a~~G~~vl~~d~rGqg~~~~d~~~~~~~~~~g~~~~g~~~~~e~~yyr~~~~D~~ravd~l~slpevD~~rI~v 179 (320)
T PF05448_consen 101 DLLP-WAAAGYAVLAMDVRGQGGRSPDYRGSSGGTLKGHITRGIDDNPEDYYYRRVYLDAVRAVDFLRSLPEVDGKRIGV 179 (320)
T ss_dssp HHHH-HHHTT-EEEEE--TTTSSSS-B-SSBSSS-SSSSTTTTTTS-TTT-HHHHHHHHHHHHHHHHHTSTTEEEEEEEE
T ss_pred cccc-cccCCeEEEEecCCCCCCCCCCccccCCCCCccHHhcCccCchHHHHHHHHHHHHHHHHHHHHhCCCcCcceEEE
Confidence 6554 566699999999999993 31100 00 01 122333444434333 2 368999
Q ss_pred EEechhHHHHHHHHhc-cCcccEEEEEcCcCChHHH
Q 008512 499 IGNSIGGMFLSTNLTR-GKLYAFLLSVNYLLSRSII 533 (563)
Q Consensus 499 vGhS~Gg~ia~~~a~~-~~~~~~v~~~~~~~~~~~~ 533 (563)
.|.|+||.+++.+|+- +.+.+.+..+|.++.....
T Consensus 180 ~G~SqGG~lal~~aaLd~rv~~~~~~vP~l~d~~~~ 215 (320)
T PF05448_consen 180 TGGSQGGGLALAAAALDPRVKAAAADVPFLCDFRRA 215 (320)
T ss_dssp EEETHHHHHHHHHHHHSST-SEEEEESESSSSHHHH
T ss_pred EeecCchHHHHHHHHhCccccEEEecCCCccchhhh
Confidence 9999999999998876 5555566667777765443
No 105
>PF05677 DUF818: Chlamydia CHLPS protein (DUF818); InterPro: IPR008536 This family of unknown function includes several Chlamydia CHLPS proteins and Legionella SidB proteins.
Probab=98.32 E-value=3.7e-05 Score=77.84 Aligned_cols=145 Identities=17% Similarity=0.151 Sum_probs=96.5
Q ss_pred eEEEEEECCeEEEEEEeCC----CCCeEEEECCCCCChHHH-------HHHHHHHhhCCCEEEEEcCCCCCCCCCCCcCC
Q 008512 407 STRIWRWNGYQIQYTVAGK----EGPAILLVHGFGAFLEHY-------RDNIYDIADGGNRVWAITLLGFGRSEKPNIVY 475 (563)
Q Consensus 407 ~~~~~~~~g~~l~y~~~g~----~~~~vlllHG~~~~~~~~-------~~~~~~l~~~g~~Vi~~D~~G~G~S~~~~~~~ 475 (563)
+-..+..|++.|......- +...||++-|.++..+.. ..+.+.....|.+|+++++||.|.|.+..
T Consensus 113 kRv~Iq~D~~~IDt~~I~~~~a~~~RWiL~s~GNg~~~E~~~~~~~~~~~~~~~ak~~~aNvl~fNYpGVg~S~G~~--- 189 (365)
T PF05677_consen 113 KRVPIQYDGVKIDTMAIHQPEAKPQRWILVSNGNGECYENRAMLDYKDDWIQRFAKELGANVLVFNYPGVGSSTGPP--- 189 (365)
T ss_pred eeEEEeeCCEEEEEEEeeCCCCCCCcEEEEEcCChHHhhhhhhhccccHHHHHHHHHcCCcEEEECCCccccCCCCC---
Confidence 3345666888777654431 255899999998876662 12333334458899999999999998776
Q ss_pred CHHHHHHHHHHHHHHhC-------CCcEEEEEechhHHHHHHHHhccCc-----ccEEEEE-cCcC-----------ChH
Q 008512 476 TELMWSELLRDFTVEVV-------GEPVHLIGNSIGGMFLSTNLTRGKL-----YAFLLSV-NYLL-----------SRS 531 (563)
Q Consensus 476 ~~~~~~~~l~~~l~~l~-------~~~i~lvGhS~Gg~ia~~~a~~~~~-----~~~v~~~-~~~~-----------~~~ 531 (563)
+.++++.+-.++++.+. .+.|++.|||+||.++..++..... ++-+++- -.+. +..
T Consensus 190 s~~dLv~~~~a~v~yL~d~~~G~ka~~Ii~yG~SLGG~Vqa~AL~~~~~~~~dgi~~~~ikDRsfssl~~vas~~~~~~~ 269 (365)
T PF05677_consen 190 SRKDLVKDYQACVRYLRDEEQGPKAKNIILYGHSLGGGVQAEALKKEVLKGSDGIRWFLIKDRSFSSLAAVASQFFGPIG 269 (365)
T ss_pred CHHHHHHHHHHHHHHHHhcccCCChheEEEeeccccHHHHHHHHHhcccccCCCeeEEEEecCCcchHHHHHHHHHHHHH
Confidence 35777777777776653 2679999999999999887765322 3333332 1111 122
Q ss_pred HHHHHhhhcCCCCCCCCCCccch
Q 008512 532 IICRLFCCHCCLSLACGGQVCCP 554 (563)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~~~ 554 (563)
.+.-...+-.+++.++...++||
T Consensus 270 ~~l~~l~gWnidS~K~s~~l~cp 292 (365)
T PF05677_consen 270 KLLIKLLGWNIDSAKNSEKLQCP 292 (365)
T ss_pred HHHHHHhccCCCchhhhccCCCC
Confidence 33333445678888998888887
No 106
>COG3319 Thioesterase domains of type I polyketide synthases or non-ribosomal peptide synthetases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.31 E-value=4.9e-06 Score=82.62 Aligned_cols=99 Identities=18% Similarity=0.180 Sum_probs=83.0
Q ss_pred CeEEEECCCCCChHHHHHHHHHHhhCCCEEEEEcCCCCCCCCCCCcCCCHHHHHHHHHHHHHHhC-CCcEEEEEechhHH
Q 008512 428 PAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFTVEVV-GEPVHLIGNSIGGM 506 (563)
Q Consensus 428 ~~vlllHG~~~~~~~~~~~~~~l~~~g~~Vi~~D~~G~G~S~~~~~~~~~~~~~~~l~~~l~~l~-~~~i~lvGhS~Gg~ 506 (563)
|+++++|+.+|....|..+...|... ..|+.++.||.|. ......+++++++...+.|.... ..+++|+|+|+||.
T Consensus 1 ~pLF~fhp~~G~~~~~~~L~~~l~~~-~~v~~l~a~g~~~--~~~~~~~l~~~a~~yv~~Ir~~QP~GPy~L~G~S~GG~ 77 (257)
T COG3319 1 PPLFCFHPAGGSVLAYAPLAAALGPL-LPVYGLQAPGYGA--GEQPFASLDDMAAAYVAAIRRVQPEGPYVLLGWSLGGA 77 (257)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHhccC-ceeeccccCcccc--cccccCCHHHHHHHHHHHHHHhCCCCCEEEEeeccccH
Confidence 57999999999999999999999985 9999999999985 33445788888888777777665 48999999999999
Q ss_pred HHHHHHhc----cCcccEEEEEcCcCC
Q 008512 507 FLSTNLTR----GKLYAFLLSVNYLLS 529 (563)
Q Consensus 507 ia~~~a~~----~~~~~~v~~~~~~~~ 529 (563)
+|..+|.+ .+-+..++++.....
T Consensus 78 vA~evA~qL~~~G~~Va~L~llD~~~~ 104 (257)
T COG3319 78 VAFEVAAQLEAQGEEVAFLGLLDAVPP 104 (257)
T ss_pred HHHHHHHHHHhCCCeEEEEEEeccCCC
Confidence 99999875 556777777777665
No 107
>PF12740 Chlorophyllase2: Chlorophyllase enzyme; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=98.28 E-value=5.1e-06 Score=82.09 Aligned_cols=102 Identities=20% Similarity=0.198 Sum_probs=71.9
Q ss_pred CCeEEEECCCCCChHHHHHHHHHHhhCCCEEEEEcCCCCCCCCCCCcCCCHHHHHHHHHHHH-HHh------CCCcEEEE
Q 008512 427 GPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFT-VEV------VGEPVHLI 499 (563)
Q Consensus 427 ~~~vlllHG~~~~~~~~~~~~~~l~~~g~~Vi~~D~~G~G~S~~~~~~~~~~~~~~~l~~~l-~~l------~~~~i~lv 499 (563)
=|.|||+||+......|..+++++++.||-|+++|+...+............+.++++.+=+ ..+ ...++.|.
T Consensus 17 yPVv~f~~G~~~~~s~Ys~ll~hvAShGyIVV~~d~~~~~~~~~~~~~~~~~~vi~Wl~~~L~~~l~~~v~~D~s~l~l~ 96 (259)
T PF12740_consen 17 YPVVLFLHGFLLINSWYSQLLEHVASHGYIVVAPDLYSIGGPDDTDEVASAAEVIDWLAKGLESKLPLGVKPDFSKLALA 96 (259)
T ss_pred cCEEEEeCCcCCCHHHHHHHHHHHHhCceEEEEecccccCCCCcchhHHHHHHHHHHHHhcchhhccccccccccceEEe
Confidence 57899999999877789999999999999999999776543211111112223333332211 122 23689999
Q ss_pred EechhHHHHHHHHhc------cCcccEEEEEcCcC
Q 008512 500 GNSIGGMFLSTNLTR------GKLYAFLLSVNYLL 528 (563)
Q Consensus 500 GhS~Gg~ia~~~a~~------~~~~~~v~~~~~~~ 528 (563)
|||-||-++..++.. ...+++++++.++.
T Consensus 97 GHSrGGk~Af~~al~~~~~~~~~~~~ali~lDPVd 131 (259)
T PF12740_consen 97 GHSRGGKVAFAMALGNASSSLDLRFSALILLDPVD 131 (259)
T ss_pred eeCCCCHHHHHHHhhhcccccccceeEEEEecccc
Confidence 999999999988765 23678888888877
No 108
>PRK10252 entF enterobactin synthase subunit F; Provisional
Probab=98.25 E-value=5.5e-06 Score=101.45 Aligned_cols=98 Identities=19% Similarity=0.189 Sum_probs=81.9
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHHhhCCCEEEEEcCCCCCCCCCCCcCCCHHHHHHHHHHHHHHhCC-CcEEEEEechh
Q 008512 426 EGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFTVEVVG-EPVHLIGNSIG 504 (563)
Q Consensus 426 ~~~~vlllHG~~~~~~~~~~~~~~l~~~g~~Vi~~D~~G~G~S~~~~~~~~~~~~~~~l~~~l~~l~~-~~i~lvGhS~G 504 (563)
.+++++++||++++...|..++..|.. ++.|+++|++|+|.+ ....++++++++++.+.++.+.. .+++++|||||
T Consensus 1067 ~~~~l~~lh~~~g~~~~~~~l~~~l~~-~~~v~~~~~~g~~~~--~~~~~~l~~la~~~~~~i~~~~~~~p~~l~G~S~G 1143 (1296)
T PRK10252 1067 DGPTLFCFHPASGFAWQFSVLSRYLDP-QWSIYGIQSPRPDGP--MQTATSLDEVCEAHLATLLEQQPHGPYHLLGYSLG 1143 (1296)
T ss_pred CCCCeEEecCCCCchHHHHHHHHhcCC-CCcEEEEECCCCCCC--CCCCCCHHHHHHHHHHHHHhhCCCCCEEEEEechh
Confidence 357899999999999999999999876 699999999999865 23457999999999999887654 58999999999
Q ss_pred HHHHHHHHhc----cCcccEEEEEcC
Q 008512 505 GMFLSTNLTR----GKLYAFLLSVNY 526 (563)
Q Consensus 505 g~ia~~~a~~----~~~~~~v~~~~~ 526 (563)
|.++..+|.+ +..+..++++..
T Consensus 1144 g~vA~e~A~~l~~~~~~v~~l~l~~~ 1169 (1296)
T PRK10252 1144 GTLAQGIAARLRARGEEVAFLGLLDT 1169 (1296)
T ss_pred hHHHHHHHHHHHHcCCceeEEEEecC
Confidence 9999999874 556666666554
No 109
>COG0412 Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.23 E-value=2e-05 Score=77.84 Aligned_cols=100 Identities=19% Similarity=0.180 Sum_probs=76.0
Q ss_pred CeEEEECCCCCChHHHHHHHHHHhhCCCEEEEEcCCCC-CCCCCCC-------c----CCCHHHHHHHHHHHHHHhC---
Q 008512 428 PAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGF-GRSEKPN-------I----VYTELMWSELLRDFTVEVV--- 492 (563)
Q Consensus 428 ~~vlllHG~~~~~~~~~~~~~~l~~~g~~Vi~~D~~G~-G~S~~~~-------~----~~~~~~~~~~l~~~l~~l~--- 492 (563)
|.||++|++.|-......+++.|++.||.|+++|+.+. |.+.... . ..+..+...|+...++.+.
T Consensus 28 P~VIv~hei~Gl~~~i~~~a~rlA~~Gy~v~~Pdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~~~~L~~~~ 107 (236)
T COG0412 28 PGVIVLHEIFGLNPHIRDVARRLAKAGYVVLAPDLYGRQGDPTDIEDEPAELETGLVERVDPAEVLADIDAALDYLARQP 107 (236)
T ss_pred CEEEEEecccCCchHHHHHHHHHHhCCcEEEechhhccCCCCCcccccHHHHhhhhhccCCHHHHHHHHHHHHHHHHhCC
Confidence 79999999999988999999999999999999998763 4332211 0 1233567777777777663
Q ss_pred ---CCcEEEEEechhHHHHHHHHhcc-CcccEEEEEcCc
Q 008512 493 ---GEPVHLIGNSIGGMFLSTNLTRG-KLYAFLLSVNYL 527 (563)
Q Consensus 493 ---~~~i~lvGhS~Gg~ia~~~a~~~-~~~~~v~~~~~~ 527 (563)
.++|.++|+||||.+++.++... ++.+.+...+..
T Consensus 108 ~~~~~~ig~~GfC~GG~~a~~~a~~~~~v~a~v~fyg~~ 146 (236)
T COG0412 108 QVDPKRIGVVGFCMGGGLALLAATRAPEVKAAVAFYGGL 146 (236)
T ss_pred CCCCceEEEEEEcccHHHHHHhhcccCCccEEEEecCCC
Confidence 36799999999999999999885 455555554443
No 110
>PLN02733 phosphatidylcholine-sterol O-acyltransferase
Probab=98.23 E-value=5.3e-06 Score=88.87 Aligned_cols=88 Identities=18% Similarity=0.220 Sum_probs=65.1
Q ss_pred CChHHHHHHHHHHhhCCCEEEEEcCCCCCCCCCCCc--CCCHHHHHHHHHHHHHHhCCCcEEEEEechhHHHHHHHHhc-
Q 008512 438 AFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNI--VYTELMWSELLRDFTVEVVGEPVHLIGNSIGGMFLSTNLTR- 514 (563)
Q Consensus 438 ~~~~~~~~~~~~l~~~g~~Vi~~D~~G~G~S~~~~~--~~~~~~~~~~l~~~l~~l~~~~i~lvGhS~Gg~ia~~~a~~- 514 (563)
.....|..+++.|.+.||.+ ..|++|+|.+.+... ...++++.+.+.++.+..+..+++|+||||||.++..++..
T Consensus 105 ~~~~~~~~li~~L~~~GY~~-~~dL~g~gYDwR~~~~~~~~~~~Lk~lIe~~~~~~g~~kV~LVGHSMGGlva~~fl~~~ 183 (440)
T PLN02733 105 DEVYYFHDMIEQLIKWGYKE-GKTLFGFGYDFRQSNRLPETMDGLKKKLETVYKASGGKKVNIISHSMGGLLVKCFMSLH 183 (440)
T ss_pred chHHHHHHHHHHHHHcCCcc-CCCcccCCCCccccccHHHHHHHHHHHHHHHHHHcCCCCEEEEEECHhHHHHHHHHHHC
Confidence 45688999999999999866 889999999876532 12345555556666666678899999999999999988764
Q ss_pred cC----cccEEEEEcC
Q 008512 515 GK----LYAFLLSVNY 526 (563)
Q Consensus 515 ~~----~~~~v~~~~~ 526 (563)
++ .++.++.+.+
T Consensus 184 p~~~~k~I~~~I~la~ 199 (440)
T PLN02733 184 SDVFEKYVNSWIAIAA 199 (440)
T ss_pred CHhHHhHhccEEEECC
Confidence 33 3455555444
No 111
>COG3458 Acetyl esterase (deacetylase) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.22 E-value=2.2e-06 Score=83.45 Aligned_cols=172 Identities=20% Similarity=0.170 Sum_probs=101.8
Q ss_pred HHHHHhhhhhccCccCCCCCChHHHHHHhhhhcchhHHHHHhhhccCCCCCCeeEEEEEECCeEEEEEEeC-----CCCC
Q 008512 354 YEAIKFEKERNAGFLSPFGYSAATIAAAADAVCSMEWYWLMSLRSLRSNEGVYSTRIWRWNGYQIQYTVAG-----KEGP 428 (563)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~g~~~~~ia~a~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~g~~l~y~~~g-----~~~~ 428 (563)
.+++.|..++.+ |=+..-+|--.-.++.....-..+.....+.+.-.-+.++|...+|.+|.-+..- ..-|
T Consensus 9 eeLk~Y~p~~~~----P~DFdeFW~~~l~e~~~~~~~p~l~~~d~~~~~ve~ydvTf~g~~g~rI~gwlvlP~~~~~~~P 84 (321)
T COG3458 9 EELKAYRPEREA----PDDFDEFWKKTLEEARKVPPEPVLERSDFTLPRVEVYDVTFTGYGGARIKGWLVLPRHEKGKLP 84 (321)
T ss_pred HHHHhhCCCCCC----CCcHHHHHHHHHHHHhcCCCCceEEeccccCCceEEEEEEEeccCCceEEEEEEeecccCCccc
Confidence 456666544322 2344667755544433332212222221112223345567777888888854332 2357
Q ss_pred eEEEECCCCCChHHHHHHHHHHhhCCCEEEEEcCCCCCCCCC----CCcC-----------------C----CHHHHHHH
Q 008512 429 AILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEK----PNIV-----------------Y----TELMWSEL 483 (563)
Q Consensus 429 ~vlllHG~~~~~~~~~~~~~~l~~~g~~Vi~~D~~G~G~S~~----~~~~-----------------~----~~~~~~~~ 483 (563)
.||-.||+++....|..++..-+. ||.|+++|.||.|.|.. ++.. + -+.|....
T Consensus 85 ~vV~fhGY~g~~g~~~~~l~wa~~-Gyavf~MdvRGQg~~~~dt~~~p~~~s~pG~mtrGilD~kd~yyyr~v~~D~~~a 163 (321)
T COG3458 85 AVVQFHGYGGRGGEWHDMLHWAVA-GYAVFVMDVRGQGSSSQDTADPPGGPSDPGFMTRGILDRKDTYYYRGVFLDAVRA 163 (321)
T ss_pred eEEEEeeccCCCCCcccccccccc-ceeEEEEecccCCCccccCCCCCCCCcCCceeEeecccCCCceEEeeehHHHHHH
Confidence 899999999998888776655444 99999999999998842 1111 0 11222222
Q ss_pred HHHHH--HHhCCCcEEEEEechhHHHHHHHHhc-cCcccEEEEEcCcCCh
Q 008512 484 LRDFT--VEVVGEPVHLIGNSIGGMFLSTNLTR-GKLYAFLLSVNYLLSR 530 (563)
Q Consensus 484 l~~~l--~~l~~~~i~lvGhS~Gg~ia~~~a~~-~~~~~~v~~~~~~~~~ 530 (563)
+..++ .+...++|.+.|.|.||.+++.+++- +.+.+.+..+|.++..
T Consensus 164 ve~~~sl~~vde~Ri~v~G~SqGGglalaaaal~~rik~~~~~~Pfl~df 213 (321)
T COG3458 164 VEILASLDEVDEERIGVTGGSQGGGLALAAAALDPRIKAVVADYPFLSDF 213 (321)
T ss_pred HHHHhccCccchhheEEeccccCchhhhhhhhcChhhhcccccccccccc
Confidence 22221 22335899999999999999998876 5555555666665543
No 112
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=98.19 E-value=9e-06 Score=79.18 Aligned_cols=101 Identities=17% Similarity=0.114 Sum_probs=67.6
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHHhhCCCEEEEEcCCCCCC-CCCC--CcC-----C---CHHHHHHHHHHHHHHhC--
Q 008512 426 EGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGR-SEKP--NIV-----Y---TELMWSELLRDFTVEVV-- 492 (563)
Q Consensus 426 ~~~~vlllHG~~~~~~~~~~~~~~l~~~g~~Vi~~D~~G~G~-S~~~--~~~-----~---~~~~~~~~l~~~l~~l~-- 492 (563)
+.|.||++|++.|-......+++.|++.||.|+++|+.+-.. .... ... . ..+...+++...++.+.
T Consensus 13 ~~~~Vvv~~d~~G~~~~~~~~ad~lA~~Gy~v~~pD~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~l~~~ 92 (218)
T PF01738_consen 13 PRPAVVVIHDIFGLNPNIRDLADRLAEEGYVVLAPDLFGGRGAPPSDPEEAFAAMRELFAPRPEQVAADLQAAVDYLRAQ 92 (218)
T ss_dssp SEEEEEEE-BTTBS-HHHHHHHHHHHHTT-EEEEE-CCCCTS--CCCHHCHHHHHHHCHHHSHHHHHHHHHHHHHHHHCT
T ss_pred CCCEEEEEcCCCCCchHHHHHHHHHHhcCCCEEecccccCCCCCccchhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHhc
Confidence 357899999999988888899999999999999999865443 1111 100 0 13445666656565552
Q ss_pred ----CCcEEEEEechhHHHHHHHHhccCcccEEEEEcC
Q 008512 493 ----GEPVHLIGNSIGGMFLSTNLTRGKLYAFLLSVNY 526 (563)
Q Consensus 493 ----~~~i~lvGhS~Gg~ia~~~a~~~~~~~~v~~~~~ 526 (563)
.++|.++|+|+||.+++.++.....++.++.+-+
T Consensus 93 ~~~~~~kig~vGfc~GG~~a~~~a~~~~~~~a~v~~yg 130 (218)
T PF01738_consen 93 PEVDPGKIGVVGFCWGGKLALLLAARDPRVDAAVSFYG 130 (218)
T ss_dssp TTCEEEEEEEEEETHHHHHHHHHHCCTTTSSEEEEES-
T ss_pred cccCCCcEEEEEEecchHHhhhhhhhccccceEEEEcC
Confidence 2689999999999999999988644455555444
No 113
>COG4757 Predicted alpha/beta hydrolase [General function prediction only]
Probab=98.13 E-value=6.1e-06 Score=78.70 Aligned_cols=109 Identities=22% Similarity=0.277 Sum_probs=73.9
Q ss_pred EEEECCeEEEEEEeCCC--CCeEEEECCCC-CChHHHHHHHHHHhhCCCEEEEEcCCCCCCCCCCC---cCCCHHHH---
Q 008512 410 IWRWNGYQIQYTVAGKE--GPAILLVHGFG-AFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPN---IVYTELMW--- 480 (563)
Q Consensus 410 ~~~~~g~~l~y~~~g~~--~~~vlllHG~~-~~~~~~~~~~~~l~~~g~~Vi~~D~~G~G~S~~~~---~~~~~~~~--- 480 (563)
..-.||+.+....+... .+-.|++-|.. --...|+.++..+++.||+|+++|+||.|.|.... ..+.+.||
T Consensus 10 l~~~DG~~l~~~~~pA~~~~~g~~~va~a~Gv~~~fYRrfA~~a~~~Gf~Vlt~dyRG~g~S~p~~~~~~~~~~~DwA~~ 89 (281)
T COG4757 10 LPAPDGYSLPGQRFPADGKASGRLVVAGATGVGQYFYRRFAAAAAKAGFEVLTFDYRGIGQSRPASLSGSQWRYLDWARL 89 (281)
T ss_pred cccCCCccCccccccCCCCCCCcEEecccCCcchhHhHHHHHHhhccCceEEEEecccccCCCccccccCccchhhhhhc
Confidence 33447777665555433 23344455544 45567778999999999999999999999997643 23444444
Q ss_pred --HHHHHHHHHHhCCCcEEEEEechhHHHHHHHHhccCcc
Q 008512 481 --SELLRDFTVEVVGEPVHLIGNSIGGMFLSTNLTRGKLY 518 (563)
Q Consensus 481 --~~~l~~~l~~l~~~~i~lvGhS~Gg~ia~~~a~~~~~~ 518 (563)
...+..+-+.+...+...+||||||.+.-.+..+++..
T Consensus 90 D~~aal~~~~~~~~~~P~y~vgHS~GGqa~gL~~~~~k~~ 129 (281)
T COG4757 90 DFPAALAALKKALPGHPLYFVGHSFGGQALGLLGQHPKYA 129 (281)
T ss_pred chHHHHHHHHhhCCCCceEEeeccccceeecccccCcccc
Confidence 33333333444568999999999999887777667443
No 114
>PF02129 Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 family); InterPro: IPR000383 This entry represents a domain found peptidases Xaa-Pro dipeptidyl-peptidase and glutaryl-7-aminocephalosporanic-acid acylase, which belong to MEROPS peptidase families S15 and S45 respectively []. It is also found in hydrolases from the CocE/NonD family. Cocaine esterase (CocE) hydrolyzes cocaine endowing the bacteria with the ability to utilise cocaine as a sole source of carbon and energy []. ; GO: 0004177 aminopeptidase activity, 0006508 proteolysis; PDB: 1LNS_A 3PUI_A 3PUH_B 1JU3_A 3I2I_A 3I2G_A 1JU4_A 3I2K_A 3IDA_A 3I2H_A ....
Probab=98.05 E-value=1.7e-05 Score=80.09 Aligned_cols=112 Identities=18% Similarity=0.064 Sum_probs=70.2
Q ss_pred CCeEEEEEEeCC------CCCeEEEECCCCCCh---HHHHHHH-------HHHhhCCCEEEEEcCCCCCCCCCCCcCCCH
Q 008512 414 NGYQIQYTVAGK------EGPAILLVHGFGAFL---EHYRDNI-------YDIADGGNRVWAITLLGFGRSEKPNIVYTE 477 (563)
Q Consensus 414 ~g~~l~y~~~g~------~~~~vlllHG~~~~~---~~~~~~~-------~~l~~~g~~Vi~~D~~G~G~S~~~~~~~~~ 477 (563)
||++|....+-+ +-|+||..|+++... ....... ..|+++||.|+..|.||.|.|++......
T Consensus 1 DGv~L~adv~~P~~~~~~~~P~il~~tpY~~~~~~~~~~~~~~~~~~~~~~~~~~~GY~vV~~D~RG~g~S~G~~~~~~- 79 (272)
T PF02129_consen 1 DGVRLAADVYRPGADGGGPFPVILTRTPYGKGDQTASDLAGANPGPPSARRPFAERGYAVVVQDVRGTGGSEGEFDPMS- 79 (272)
T ss_dssp TS-EEEEEEEEE--TTSSSEEEEEEEESSTCTC-HHHHHHTTCHHSHGGGHHHHHTT-EEEEEE-TTSTTS-S-B-TTS-
T ss_pred CCCEEEEEEEecCCCCCCcccEEEEccCcCCCCCcccchhhhhcccchhHHHHHhCCCEEEEECCcccccCCCccccCC-
Confidence 566666444322 246899999998653 1111111 12888899999999999999998754333
Q ss_pred HHHHHHHHHHHHHh---C--CCcEEEEEechhHHHHHHHHhc-cCcccEEEEEcC
Q 008512 478 LMWSELLRDFTVEV---V--GEPVHLIGNSIGGMFLSTNLTR-GKLYAFLLSVNY 526 (563)
Q Consensus 478 ~~~~~~l~~~l~~l---~--~~~i~lvGhS~Gg~ia~~~a~~-~~~~~~v~~~~~ 526 (563)
..-.+|..++|+-+ . ..+|.++|.|++|.+.+.+|.. ++..++++...+
T Consensus 80 ~~e~~D~~d~I~W~~~Qpws~G~VGm~G~SY~G~~q~~~A~~~~p~LkAi~p~~~ 134 (272)
T PF02129_consen 80 PNEAQDGYDTIEWIAAQPWSNGKVGMYGISYGGFTQWAAAARRPPHLKAIVPQSG 134 (272)
T ss_dssp HHHHHHHHHHHHHHHHCTTEEEEEEEEEETHHHHHHHHHHTTT-TTEEEEEEESE
T ss_pred hhHHHHHHHHHHHHHhCCCCCCeEEeeccCHHHHHHHHHHhcCCCCceEEEeccc
Confidence 23355555555444 2 2689999999999999999984 666666666433
No 115
>PF07224 Chlorophyllase: Chlorophyllase; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=98.05 E-value=1.5e-05 Score=77.63 Aligned_cols=101 Identities=21% Similarity=0.193 Sum_probs=66.7
Q ss_pred CCeEEEECCCCCChHHHHHHHHHHhhCCCEEEEEcCCCCCCCCCCCcCCCHHHHHHHHHHHHHHh-------CCCcEEEE
Q 008512 427 GPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFTVEV-------VGEPVHLI 499 (563)
Q Consensus 427 ~~~vlllHG~~~~~~~~~~~~~~l~~~g~~Vi~~D~~G~G~S~~~~~~~~~~~~~~~l~~~l~~l-------~~~~i~lv 499 (563)
=|.|+|+||+.-....|..++.++++.||-|+++++..--.-++....-+....++++..-+.++ ...++.++
T Consensus 46 yPVilF~HG~~l~ns~Ys~lL~HIASHGfIVVAPQl~~~~~p~~~~Ei~~aa~V~~WL~~gL~~~Lp~~V~~nl~klal~ 125 (307)
T PF07224_consen 46 YPVILFLHGFNLYNSFYSQLLAHIASHGFIVVAPQLYTLFPPDGQDEIKSAASVINWLPEGLQHVLPENVEANLSKLALS 125 (307)
T ss_pred ccEEEEeechhhhhHHHHHHHHHHhhcCeEEEechhhcccCCCchHHHHHHHHHHHHHHhhhhhhCCCCcccccceEEEe
Confidence 46899999999999999999999999999999999874311111111112222333333333332 13789999
Q ss_pred EechhHHHHHHHHhcc---CcccEEEEEcCc
Q 008512 500 GNSIGGMFLSTNLTRG---KLYAFLLSVNYL 527 (563)
Q Consensus 500 GhS~Gg~ia~~~a~~~---~~~~~v~~~~~~ 527 (563)
|||.||-+|..+|... --.++++.+.++
T Consensus 126 GHSrGGktAFAlALg~a~~lkfsaLIGiDPV 156 (307)
T PF07224_consen 126 GHSRGGKTAFALALGYATSLKFSALIGIDPV 156 (307)
T ss_pred ecCCccHHHHHHHhcccccCchhheeccccc
Confidence 9999999999888752 124445544443
No 116
>TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II. This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=98.02 E-value=3.2e-05 Score=84.16 Aligned_cols=94 Identities=12% Similarity=0.080 Sum_probs=72.4
Q ss_pred CCeEEEECCCCCChHHH-----HHHHHHHhhCCCEEEEEcCCCCCCCCCCCcCCCHHHHHHHHHHHHHHh----CCCcEE
Q 008512 427 GPAILLVHGFGAFLEHY-----RDNIYDIADGGNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFTVEV----VGEPVH 497 (563)
Q Consensus 427 ~~~vlllHG~~~~~~~~-----~~~~~~l~~~g~~Vi~~D~~G~G~S~~~~~~~~~~~~~~~l~~~l~~l----~~~~i~ 497 (563)
+.+||+++.+-.....+ ..++++|.++||.|+.+|++.-+..+ ...+++++++.+.+.++.+ +.++++
T Consensus 215 ~~PLLIVPp~INK~YIlDL~P~~SlVr~lv~qG~~VflIsW~nP~~~~---r~~~ldDYv~~i~~Ald~V~~~tG~~~vn 291 (560)
T TIGR01839 215 ARPLLVVPPQINKFYIFDLSPEKSFVQYCLKNQLQVFIISWRNPDKAH---REWGLSTYVDALKEAVDAVRAITGSRDLN 291 (560)
T ss_pred CCcEEEechhhhhhheeecCCcchHHHHHHHcCCeEEEEeCCCCChhh---cCCCHHHHHHHHHHHHHHHHHhcCCCCee
Confidence 57899999988655555 37899999999999999998765442 4578888887777777665 568999
Q ss_pred EEEechhHHHHHH----HHhc-cC-cccEEEE
Q 008512 498 LIGNSIGGMFLST----NLTR-GK-LYAFLLS 523 (563)
Q Consensus 498 lvGhS~Gg~ia~~----~a~~-~~-~~~~v~~ 523 (563)
++|+||||.+++. +++. ++ .++.+++
T Consensus 292 l~GyC~GGtl~a~~~a~~aA~~~~~~V~sltl 323 (560)
T TIGR01839 292 LLGACAGGLTCAALVGHLQALGQLRKVNSLTY 323 (560)
T ss_pred EEEECcchHHHHHHHHHHHhcCCCCceeeEEe
Confidence 9999999999986 5554 53 4555444
No 117
>PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification.; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B ....
Probab=98.02 E-value=1.3e-05 Score=77.68 Aligned_cols=87 Identities=14% Similarity=0.058 Sum_probs=57.6
Q ss_pred HHHHHHHHhhCCCEEEEEcCCCCCCCCCC-----Cc---CCCHHHHHHHHHHHHHHhC--CCcEEEEEechhHHHHHHHH
Q 008512 443 YRDNIYDIADGGNRVWAITLLGFGRSEKP-----NI---VYTELMWSELLRDFTVEVV--GEPVHLIGNSIGGMFLSTNL 512 (563)
Q Consensus 443 ~~~~~~~l~~~g~~Vi~~D~~G~G~S~~~-----~~---~~~~~~~~~~l~~~l~~l~--~~~i~lvGhS~Gg~ia~~~a 512 (563)
|......|+++||.|+.+|+||.+..... .. ....+|..+.+..+++... .++|.++|+|+||++++.++
T Consensus 3 f~~~~~~la~~Gy~v~~~~~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~iD~~ri~i~G~S~GG~~a~~~~ 82 (213)
T PF00326_consen 3 FNWNAQLLASQGYAVLVPNYRGSGGYGKDFHEAGRGDWGQADVDDVVAAIEYLIKQYYIDPDRIGIMGHSYGGYLALLAA 82 (213)
T ss_dssp -SHHHHHHHTTT-EEEEEE-TTSSSSHHHHHHTTTTGTTHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETHHHHHHHHHH
T ss_pred eeHHHHHHHhCCEEEEEEcCCCCCccchhHHHhhhccccccchhhHHHHHHHHhccccccceeEEEEcccccccccchhh
Confidence 44567788899999999999998743211 11 1233444444444444322 37899999999999999998
Q ss_pred h-ccCcccEEEEEcCcCC
Q 008512 513 T-RGKLYAFLLSVNYLLS 529 (563)
Q Consensus 513 ~-~~~~~~~v~~~~~~~~ 529 (563)
. .+++.++++...++..
T Consensus 83 ~~~~~~f~a~v~~~g~~d 100 (213)
T PF00326_consen 83 TQHPDRFKAAVAGAGVSD 100 (213)
T ss_dssp HHTCCGSSEEEEESE-SS
T ss_pred cccceeeeeeeccceecc
Confidence 8 5888888888777554
No 118
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=98.01 E-value=4.9e-05 Score=74.95 Aligned_cols=113 Identities=15% Similarity=0.186 Sum_probs=69.3
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHHh-hCC--CEEEEEcCCCCCCCCCC-Cc----CCCHHHHHHHHHHHHHHhCCCcEE
Q 008512 426 EGPAILLVHGFGAFLEHYRDNIYDIA-DGG--NRVWAITLLGFGRSEKP-NI----VYTELMWSELLRDFTVEVVGEPVH 497 (563)
Q Consensus 426 ~~~~vlllHG~~~~~~~~~~~~~~l~-~~g--~~Vi~~D~~G~G~S~~~-~~----~~~~~~~~~~l~~~l~~l~~~~i~ 497 (563)
.+..+||+||+..+.+.-..-+..+. ..+ -.++.|.+|+.|.-..- .. ..+-..+.+.+..+.+..+..+|+
T Consensus 17 ~~~vlvfVHGyn~~f~~a~~r~aql~~~~~~~~~~i~FsWPS~g~~~~Y~~d~~~a~~s~~~l~~~L~~L~~~~~~~~I~ 96 (233)
T PF05990_consen 17 DKEVLVFVHGYNNSFEDALRRAAQLAHDLGFPGVVILFSWPSDGSLLGYFYDRESARFSGPALARFLRDLARAPGIKRIH 96 (233)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEEEcCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhccCCceEE
Confidence 46789999999988665432222222 222 27999999988863221 11 112233333333344444668999
Q ss_pred EEEechhHHHHHHHHhc-----c-----CcccEEEEEcCcCChHHHHHHhh
Q 008512 498 LIGNSIGGMFLSTNLTR-----G-----KLYAFLLSVNYLLSRSIICRLFC 538 (563)
Q Consensus 498 lvGhS~Gg~ia~~~a~~-----~-----~~~~~v~~~~~~~~~~~~~~~~~ 538 (563)
|++||||+.+.+.+... . ..+..+++..+-.+...+.....
T Consensus 97 ilaHSMG~rv~~~aL~~l~~~~~~~~~~~~~~~viL~ApDid~d~f~~~~~ 147 (233)
T PF05990_consen 97 ILAHSMGNRVLLEALRQLASEGERPDVKARFDNVILAAPDIDNDVFRSQLP 147 (233)
T ss_pred EEEeCchHHHHHHHHHHHHhcccchhhHhhhheEEEECCCCCHHHHHHHHH
Confidence 99999999999888643 1 14556677777666655544443
No 119
>PF06821 Ser_hydrolase: Serine hydrolase; InterPro: IPR010662 This family contains a number of hypothetical bacterial proteins of unknown function, which may be cytosolic. The Crystal Structure Of The Yden Gene Product Swiss:P96671 from B. Subtilis has been solved. The structure shows an alpha-beta hydrolase fold suggesting an enzymatic function for these proteins [].; GO: 0016787 hydrolase activity; PDB: 3BDV_B 2QS9_A 1UXO_A.
Probab=98.00 E-value=2.3e-05 Score=73.43 Aligned_cols=89 Identities=22% Similarity=0.234 Sum_probs=60.1
Q ss_pred EEEECCCCCC-hHHHHHH-HHHHhhCCCEEEEEcCCCCCCCCCCCcCCCHHHHHHHHHHHHHHhCCCcEEEEEechhHHH
Q 008512 430 ILLVHGFGAF-LEHYRDN-IYDIADGGNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFTVEVVGEPVHLIGNSIGGMF 507 (563)
Q Consensus 430 vlllHG~~~~-~~~~~~~-~~~l~~~g~~Vi~~D~~G~G~S~~~~~~~~~~~~~~~l~~~l~~l~~~~i~lvGhS~Gg~i 507 (563)
|+++||++++ ..+|... .+.|... ++|..+|+ ...+.++|.+.+.+.+... .++++|||||+|+..
T Consensus 1 v~IvhG~~~s~~~HW~~wl~~~l~~~-~~V~~~~~----------~~P~~~~W~~~l~~~i~~~-~~~~ilVaHSLGc~~ 68 (171)
T PF06821_consen 1 VLIVHGYGGSPPDHWQPWLERQLENS-VRVEQPDW----------DNPDLDEWVQALDQAIDAI-DEPTILVAHSLGCLT 68 (171)
T ss_dssp EEEE--TTSSTTTSTHHHHHHHHTTS-EEEEEC------------TS--HHHHHHHHHHCCHC--TTTEEEEEETHHHHH
T ss_pred CEEeCCCCCCCccHHHHHHHHhCCCC-eEEecccc----------CCCCHHHHHHHHHHHHhhc-CCCeEEEEeCHHHHH
Confidence 6899999886 4567755 4556664 77777666 1346778888877777654 367999999999999
Q ss_pred HHHHH-hc-cCcccEEEEEcCcCCh
Q 008512 508 LSTNL-TR-GKLYAFLLSVNYLLSR 530 (563)
Q Consensus 508 a~~~a-~~-~~~~~~v~~~~~~~~~ 530 (563)
++.++ .. ...+++++++.++...
T Consensus 69 ~l~~l~~~~~~~v~g~lLVAp~~~~ 93 (171)
T PF06821_consen 69 ALRWLAEQSQKKVAGALLVAPFDPD 93 (171)
T ss_dssp HHHHHHHTCCSSEEEEEEES--SCG
T ss_pred HHHHHhhcccccccEEEEEcCCCcc
Confidence 99999 54 6667777777777654
No 120
>COG2945 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=97.99 E-value=5.5e-05 Score=70.45 Aligned_cols=103 Identities=15% Similarity=0.106 Sum_probs=70.1
Q ss_pred CCCeEEEECCCC---CCh--HHHHHHHHHHhhCCCEEEEEcCCCCCCCCCCC-cCC-CHHHHHHHHHHHHHHhCCCc-EE
Q 008512 426 EGPAILLVHGFG---AFL--EHYRDNIYDIADGGNRVWAITLLGFGRSEKPN-IVY-TELMWSELLRDFTVEVVGEP-VH 497 (563)
Q Consensus 426 ~~~~vlllHG~~---~~~--~~~~~~~~~l~~~g~~Vi~~D~~G~G~S~~~~-~~~-~~~~~~~~l~~~l~~l~~~~-i~ 497 (563)
..|..|++|-.+ |+. ..-..++..|.+.||.++.||+||.|.|.++. ... ..+|....+..+.......+ ..
T Consensus 27 ~~~iAli~HPHPl~gGtm~nkvv~~la~~l~~~G~atlRfNfRgVG~S~G~fD~GiGE~~Da~aaldW~~~~hp~s~~~~ 106 (210)
T COG2945 27 AAPIALICHPHPLFGGTMNNKVVQTLARALVKRGFATLRFNFRGVGRSQGEFDNGIGELEDAAAALDWLQARHPDSASCW 106 (210)
T ss_pred CCceEEecCCCccccCccCCHHHHHHHHHHHhCCceEEeecccccccccCcccCCcchHHHHHHHHHHHHhhCCCchhhh
Confidence 367788888753 433 23446778888999999999999999998874 222 34444444433333333344 47
Q ss_pred EEEechhHHHHHHHHhc-cCcccEEEEEcCcC
Q 008512 498 LIGNSIGGMFLSTNLTR-GKLYAFLLSVNYLL 528 (563)
Q Consensus 498 lvGhS~Gg~ia~~~a~~-~~~~~~v~~~~~~~ 528 (563)
+.|+|+|++|++.+|.+ ++..-.+...+...
T Consensus 107 l~GfSFGa~Ia~~la~r~~e~~~~is~~p~~~ 138 (210)
T COG2945 107 LAGFSFGAYIAMQLAMRRPEILVFISILPPIN 138 (210)
T ss_pred hcccchHHHHHHHHHHhcccccceeeccCCCC
Confidence 89999999999999987 56555554444444
No 121
>PF02230 Abhydrolase_2: Phospholipase/Carboxylesterase; InterPro: IPR003140 This entry represents the alpha/beta hydrolase domain found in phospholipases [], carboxylesterases [] and thioesterases.; GO: 0016787 hydrolase activity; PDB: 3U0V_A 1AUR_A 1AUO_B 1FJ2_B 3CN9_A 3CN7_A.
Probab=97.99 E-value=3.3e-05 Score=75.19 Aligned_cols=106 Identities=18% Similarity=0.062 Sum_probs=60.6
Q ss_pred CCCCeEEEECCCCCChHHHHHHHH-HHhhCCCEEEEEcCCC------CCC---CCCC-----C-c---CCCHHHHHHHHH
Q 008512 425 KEGPAILLVHGFGAFLEHYRDNIY-DIADGGNRVWAITLLG------FGR---SEKP-----N-I---VYTELMWSELLR 485 (563)
Q Consensus 425 ~~~~~vlllHG~~~~~~~~~~~~~-~l~~~g~~Vi~~D~~G------~G~---S~~~-----~-~---~~~~~~~~~~l~ 485 (563)
+..+.||++||+|++...+..... .+...+..++.++-|- .|. +.-+ . . ...+.+..+.+.
T Consensus 12 ~~~~lvi~LHG~G~~~~~~~~~~~~~~~~~~~~~i~p~ap~~~~~~~~g~~~~~Wf~~~~~~~~~~~~~~~i~~s~~~l~ 91 (216)
T PF02230_consen 12 KAKPLVILLHGYGDSEDLFALLAELNLALPNTRFISPRAPSRPVTVPGGYRMPAWFDIYDFDPEGPEDEAGIEESAERLD 91 (216)
T ss_dssp T-SEEEEEE--TTS-HHHHHHHHHHHTCSTTEEEEEE---EEE-GGGTT-EEE-SS-BSCSSSSSEB-HHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCcchhHHHHhhcccCCceEEEeccCCCCCcccccccCCCceeeccCCCcchhhhHHHHHHHHHHHH
Confidence 346789999999999977765555 2333456777765431 233 2111 1 1 112333344455
Q ss_pred HHHHHh-----CCCcEEEEEechhHHHHHHHHhc-cCcccEEEEEcCcCCh
Q 008512 486 DFTVEV-----VGEPVHLIGNSIGGMFLSTNLTR-GKLYAFLLSVNYLLSR 530 (563)
Q Consensus 486 ~~l~~l-----~~~~i~lvGhS~Gg~ia~~~a~~-~~~~~~v~~~~~~~~~ 530 (563)
++++.. ...+|+|+|+|+||++++.++.. +...+.++.+++..+.
T Consensus 92 ~li~~~~~~~i~~~ri~l~GFSQGa~~al~~~l~~p~~~~gvv~lsG~~~~ 142 (216)
T PF02230_consen 92 ELIDEEVAYGIDPSRIFLGGFSQGAAMALYLALRYPEPLAGVVALSGYLPP 142 (216)
T ss_dssp HHHHHHHHTT--GGGEEEEEETHHHHHHHHHHHCTSSTSSEEEEES---TT
T ss_pred HHHHHHHHcCCChhheehhhhhhHHHHHHHHHHHcCcCcCEEEEeeccccc
Confidence 555432 33789999999999999999987 7888888888776543
No 122
>KOG2931 consensus Differentiation-related gene 1 protein (NDR1 protein), related proteins [Function unknown]
Probab=97.96 E-value=0.00024 Score=70.32 Aligned_cols=133 Identities=14% Similarity=0.061 Sum_probs=104.3
Q ss_pred eEEEEEECCeEEEEEEeCCC---CCeEEEECCCCCChHH-HHHH-----HHHHhhCCCEEEEEcCCCCCCCCC--CC--c
Q 008512 407 STRIWRWNGYQIQYTVAGKE---GPAILLVHGFGAFLEH-YRDN-----IYDIADGGNRVWAITLLGFGRSEK--PN--I 473 (563)
Q Consensus 407 ~~~~~~~~g~~l~y~~~g~~---~~~vlllHG~~~~~~~-~~~~-----~~~l~~~g~~Vi~~D~~G~G~S~~--~~--~ 473 (563)
+.+.++.....++....|.. +|++|=.|..+.+... |..+ +..+..+ |.|+-+|-|||-.-.. +. .
T Consensus 23 ~e~~V~T~~G~v~V~V~Gd~~~~kpaiiTyhDlglN~~scFq~ff~~p~m~ei~~~-fcv~HV~~PGqe~gAp~~p~~y~ 101 (326)
T KOG2931|consen 23 QEHDVETAHGVVHVTVYGDPKGNKPAIITYHDLGLNHKSCFQGFFNFPDMAEILEH-FCVYHVDAPGQEDGAPSFPEGYP 101 (326)
T ss_pred eeeeeccccccEEEEEecCCCCCCceEEEecccccchHhHhHHhhcCHhHHHHHhh-eEEEecCCCccccCCccCCCCCC
Confidence 34444444466777777643 6789999999987654 6644 4556664 9999999999954422 22 2
Q ss_pred CCCHHHHHHHHHHHHHHhCCCcEEEEEechhHHHHHHHHhc-cCcccEEEEEcCcCChHHHHHHhhhc
Q 008512 474 VYTELMWSELLRDFTVEVVGEPVHLIGNSIGGMFLSTNLTR-GKLYAFLLSVNYLLSRSIICRLFCCH 540 (563)
Q Consensus 474 ~~~~~~~~~~l~~~l~~l~~~~i~lvGhS~Gg~ia~~~a~~-~~~~~~v~~~~~~~~~~~~~~~~~~~ 540 (563)
..+++++++++..++++++.+.++-+|--.|++|..++|.. |+++-++++++.......|.+.+.+.
T Consensus 102 yPsmd~LAd~l~~VL~~f~lk~vIg~GvGAGAyIL~rFAl~hp~rV~GLvLIn~~~~a~gwiew~~~K 169 (326)
T KOG2931|consen 102 YPSMDDLADMLPEVLDHFGLKSVIGMGVGAGAYILARFALNHPERVLGLVLINCDPCAKGWIEWAYNK 169 (326)
T ss_pred CCCHHHHHHHHHHHHHhcCcceEEEecccccHHHHHHHHhcChhheeEEEEEecCCCCchHHHHHHHH
Confidence 45899999999999999999999999999999999999986 99999999999988888887776554
No 123
>PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A ....
Probab=97.93 E-value=2.3e-05 Score=75.63 Aligned_cols=96 Identities=18% Similarity=0.065 Sum_probs=59.5
Q ss_pred EEEECCCC---CChHHHHHHHHHHhh-CCCEEEEEcCCCCCCCCCCCcCCCHHHHHHHHHHHHHH-----hCCCcEEEEE
Q 008512 430 ILLVHGFG---AFLEHYRDNIYDIAD-GGNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFTVE-----VVGEPVHLIG 500 (563)
Q Consensus 430 vlllHG~~---~~~~~~~~~~~~l~~-~g~~Vi~~D~~G~G~S~~~~~~~~~~~~~~~l~~~l~~-----l~~~~i~lvG 500 (563)
||++||.+ ++......++..++. .|+.|+++|+|=.... .....++|..+.+..+++. ...++|+|+|
T Consensus 1 v~~~HGGg~~~g~~~~~~~~~~~la~~~g~~v~~~~Yrl~p~~---~~p~~~~D~~~a~~~l~~~~~~~~~d~~~i~l~G 77 (211)
T PF07859_consen 1 VVYIHGGGWVMGSKESHWPFAARLAAERGFVVVSIDYRLAPEA---PFPAALEDVKAAYRWLLKNADKLGIDPERIVLIG 77 (211)
T ss_dssp EEEE--STTTSCGTTTHHHHHHHHHHHHTSEEEEEE---TTTS---STTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEEE
T ss_pred CEEECCcccccCChHHHHHHHHHHHhhccEEEEEeeccccccc---cccccccccccceeeeccccccccccccceEEee
Confidence 79999976 444555566776664 7999999999943221 1122344555555555554 3347899999
Q ss_pred echhHHHHHHHHhc---c--CcccEEEEEcCcC
Q 008512 501 NSIGGMFLSTNLTR---G--KLYAFLLSVNYLL 528 (563)
Q Consensus 501 hS~Gg~ia~~~a~~---~--~~~~~v~~~~~~~ 528 (563)
+|-||.+++.++.. . ...+.++++.+..
T Consensus 78 ~SAGg~la~~~~~~~~~~~~~~~~~~~~~~p~~ 110 (211)
T PF07859_consen 78 DSAGGHLALSLALRARDRGLPKPKGIILISPWT 110 (211)
T ss_dssp ETHHHHHHHHHHHHHHHTTTCHESEEEEESCHS
T ss_pred cccccchhhhhhhhhhhhcccchhhhhcccccc
Confidence 99999999998864 2 2356666666643
No 124
>PF05057 DUF676: Putative serine esterase (DUF676); InterPro: IPR007751 This domain, whose function is unknown, is found within a group of putative lipases.
Probab=97.89 E-value=2.4e-05 Score=76.39 Aligned_cols=86 Identities=17% Similarity=0.191 Sum_probs=50.5
Q ss_pred CCeEEEECCCCCChHHHHHHHHHHhhC--CCEEEEEcCCCCCCCCCCCcCCCHHHHH----HHHHHHHHHhCC--CcEEE
Q 008512 427 GPAILLVHGFGAFLEHYRDNIYDIADG--GNRVWAITLLGFGRSEKPNIVYTELMWS----ELLRDFTVEVVG--EPVHL 498 (563)
Q Consensus 427 ~~~vlllHG~~~~~~~~~~~~~~l~~~--g~~Vi~~D~~G~G~S~~~~~~~~~~~~~----~~l~~~l~~l~~--~~i~l 498 (563)
...|||+||+.|+..+|..+.+.+... .+.-..+...+...... ....+++..+ +.+.+.++.... .+|++
T Consensus 4 ~hLvV~vHGL~G~~~d~~~~~~~l~~~~~~~~~~~i~~~~~~~n~~-~T~~gI~~~g~rL~~eI~~~~~~~~~~~~~Isf 82 (217)
T PF05057_consen 4 VHLVVFVHGLWGNPADMRYLKNHLEKIPEDLPNARIVVLGYSNNEF-KTFDGIDVCGERLAEEILEHIKDYESKIRKISF 82 (217)
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHHHhhhhcchhhhhhhccccccc-ccchhhHHHHHHHHHHHHHhccccccccccceE
Confidence 347999999999999998777776651 22211222222211111 1122344443 333334433333 48999
Q ss_pred EEechhHHHHHHHHh
Q 008512 499 IGNSIGGMFLSTNLT 513 (563)
Q Consensus 499 vGhS~Gg~ia~~~a~ 513 (563)
+||||||.++..+..
T Consensus 83 IgHSLGGli~r~al~ 97 (217)
T PF05057_consen 83 IGHSLGGLIARYALG 97 (217)
T ss_pred EEecccHHHHHHHHH
Confidence 999999999977654
No 125
>COG1075 LipA Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]
Probab=97.87 E-value=4.1e-05 Score=79.73 Aligned_cols=115 Identities=21% Similarity=0.215 Sum_probs=88.4
Q ss_pred CCeEEEECCCCCChHHHHHHHHHHhhCCCE---EEEEcCCCCCCCCCCCcCCCHHHHHHHHHHHHHHhCCCcEEEEEech
Q 008512 427 GPAILLVHGFGAFLEHYRDNIYDIADGGNR---VWAITLLGFGRSEKPNIVYTELMWSELLRDFTVEVVGEPVHLIGNSI 503 (563)
Q Consensus 427 ~~~vlllHG~~~~~~~~~~~~~~l~~~g~~---Vi~~D~~G~G~S~~~~~~~~~~~~~~~l~~~l~~l~~~~i~lvGhS~ 503 (563)
.-+++++||+......|..+...+...|+. ++.+++++. .. .......-+.+...+.+++...+.+++.|+||||
T Consensus 59 ~~pivlVhG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~-~~~~~~~~~ql~~~V~~~l~~~ga~~v~LigHS~ 136 (336)
T COG1075 59 KEPIVLVHGLGGGYGNFLPLDYRLAILGWLTNGVYAFELSGG-DG-TYSLAVRGEQLFAYVDEVLAKTGAKKVNLIGHSM 136 (336)
T ss_pred CceEEEEccCcCCcchhhhhhhhhcchHHHhccccccccccc-CC-CccccccHHHHHHHHHHHHhhcCCCceEEEeecc
Confidence 448999999988889998888888887877 999998866 11 1223445667777788888888889999999999
Q ss_pred hHHHHHHHHhc-c--CcccEEEEEcCcCChHHHHHHhhhcCCC
Q 008512 504 GGMFLSTNLTR-G--KLYAFLLSVNYLLSRSIICRLFCCHCCL 543 (563)
Q Consensus 504 Gg~ia~~~a~~-~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 543 (563)
||.++..++.. + ..++.++.................+...
T Consensus 137 GG~~~ry~~~~~~~~~~V~~~~tl~tp~~Gt~~~~~~~~~~~~ 179 (336)
T COG1075 137 GGLDSRYYLGVLGGANRVASVVTLGTPHHGTELADLVGLLIYV 179 (336)
T ss_pred cchhhHHHHhhcCccceEEEEEEeccCCCCchhhhhhcchhhh
Confidence 99999988776 4 6788888888877777776655443333
No 126
>PF03403 PAF-AH_p_II: Platelet-activating factor acetylhydrolase, isoform II; PDB: 3F98_B 3F97_B 3D59_A 3F96_A 3D5E_B 3F9C_A.
Probab=97.85 E-value=2.4e-05 Score=82.62 Aligned_cols=39 Identities=26% Similarity=0.278 Sum_probs=28.7
Q ss_pred CCeEEEECCCCCChHHHHHHHHHHhhCCCEEEEEcCCCC
Q 008512 427 GPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGF 465 (563)
Q Consensus 427 ~~~vlllHG~~~~~~~~~~~~~~l~~~g~~Vi~~D~~G~ 465 (563)
=|+|||-||++++...|..++..|+++||-|+++|+|..
T Consensus 100 ~PvvIFSHGlgg~R~~yS~~~~eLAS~GyVV~aieHrDg 138 (379)
T PF03403_consen 100 FPVVIFSHGLGGSRTSYSAICGELASHGYVVAAIEHRDG 138 (379)
T ss_dssp EEEEEEE--TT--TTTTHHHHHHHHHTT-EEEEE---SS
T ss_pred CCEEEEeCCCCcchhhHHHHHHHHHhCCeEEEEeccCCC
Confidence 478999999999999999999999999999999999954
No 127
>COG3571 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=97.84 E-value=0.00016 Score=65.21 Aligned_cols=104 Identities=16% Similarity=0.137 Sum_probs=74.0
Q ss_pred CCeEEEECCCCCCh--HHHHHHHHHHhhCCCEEEEEcCCCCCCC-----CCCC-cCCCHHHHHHHHHHHHHHhCCCcEEE
Q 008512 427 GPAILLVHGFGAFL--EHYRDNIYDIADGGNRVWAITLLGFGRS-----EKPN-IVYTELMWSELLRDFTVEVVGEPVHL 498 (563)
Q Consensus 427 ~~~vlllHG~~~~~--~~~~~~~~~l~~~g~~Vi~~D~~G~G~S-----~~~~-~~~~~~~~~~~l~~~l~~l~~~~i~l 498 (563)
.-+|||-||.+++. ..+..++..++.+|+.|..|+++-...- ..++ ...-...+...+.++...+...++++
T Consensus 14 ~~tilLaHGAGasmdSt~m~~~a~~la~~G~~vaRfefpYma~Rrtg~rkPp~~~~t~~~~~~~~~aql~~~l~~gpLi~ 93 (213)
T COG3571 14 PVTILLAHGAGASMDSTSMTAVAAALARRGWLVARFEFPYMAARRTGRRKPPPGSGTLNPEYIVAIAQLRAGLAEGPLII 93 (213)
T ss_pred CEEEEEecCCCCCCCCHHHHHHHHHHHhCceeEEEeecchhhhccccCCCCcCccccCCHHHHHHHHHHHhcccCCceee
Confidence 34799999998764 4666888999999999999998765222 1222 22334456666777777777789999
Q ss_pred EEechhHHHHHHHHhc--cCcccEEEEEcCcCCh
Q 008512 499 IGNSIGGMFLSTNLTR--GKLYAFLLSVNYLLSR 530 (563)
Q Consensus 499 vGhS~Gg~ia~~~a~~--~~~~~~v~~~~~~~~~ 530 (563)
-|+||||-++...+.. .++...+.+.-++.+.
T Consensus 94 GGkSmGGR~aSmvade~~A~i~~L~clgYPfhpp 127 (213)
T COG3571 94 GGKSMGGRVASMVADELQAPIDGLVCLGYPFHPP 127 (213)
T ss_pred ccccccchHHHHHHHhhcCCcceEEEecCccCCC
Confidence 9999999999888765 4444555554444443
No 128
>PRK10115 protease 2; Provisional
Probab=97.76 E-value=0.00027 Score=80.50 Aligned_cols=121 Identities=12% Similarity=0.073 Sum_probs=86.7
Q ss_pred EEECCeEEEE-EEe------CCCCCeEEEECCCCCCh--HHHHHHHHHHhhCCCEEEEEcCCCCCCCCC--------CCc
Q 008512 411 WRWNGYQIQY-TVA------GKEGPAILLVHGFGAFL--EHYRDNIYDIADGGNRVWAITLLGFGRSEK--------PNI 473 (563)
Q Consensus 411 ~~~~g~~l~y-~~~------g~~~~~vlllHG~~~~~--~~~~~~~~~l~~~g~~Vi~~D~~G~G~S~~--------~~~ 473 (563)
...||.+|.+ ... ..+.|.||++||..+.. ..|......|+++||-|+.++.||-|.=.. ...
T Consensus 422 ~s~DG~~Ip~~l~~~~~~~~~~~~P~ll~~hGg~~~~~~p~f~~~~~~l~~rG~~v~~~n~RGs~g~G~~w~~~g~~~~k 501 (686)
T PRK10115 422 TARDGVEVPVSLVYHRKHFRKGHNPLLVYGYGSYGASIDADFSFSRLSLLDRGFVYAIVHVRGGGELGQQWYEDGKFLKK 501 (686)
T ss_pred ECCCCCEEEEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCccHHHHHHHHCCcEEEEEEcCCCCccCHHHHHhhhhhcC
Confidence 3458888775 222 12358999999987755 346566667888899999999998653321 112
Q ss_pred CCCHHHHHHHHHHHHHHh--CCCcEEEEEechhHHHHHHHHhc-cCcccEEEEEcCcCChH
Q 008512 474 VYTELMWSELLRDFTVEV--VGEPVHLIGNSIGGMFLSTNLTR-GKLYAFLLSVNYLLSRS 531 (563)
Q Consensus 474 ~~~~~~~~~~l~~~l~~l--~~~~i~lvGhS~Gg~ia~~~a~~-~~~~~~v~~~~~~~~~~ 531 (563)
..+++|+.+.+..++++- ...++.+.|.|.||+++..++.+ |++.++++...++.+..
T Consensus 502 ~~~~~D~~a~~~~Lv~~g~~d~~rl~i~G~S~GG~l~~~~~~~~Pdlf~A~v~~vp~~D~~ 562 (686)
T PRK10115 502 KNTFNDYLDACDALLKLGYGSPSLCYGMGGSAGGMLMGVAINQRPELFHGVIAQVPFVDVV 562 (686)
T ss_pred CCcHHHHHHHHHHHHHcCCCChHHeEEEEECHHHHHHHHHHhcChhheeEEEecCCchhHh
Confidence 357778777777776552 23789999999999999988865 89999988877766443
No 129
>COG0400 Predicted esterase [General function prediction only]
Probab=97.76 E-value=0.0001 Score=70.98 Aligned_cols=105 Identities=17% Similarity=0.078 Sum_probs=68.4
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHHhhCCCEEEEEcCCC--CCC----CCCCCcCCCH-------HHHHHHHHHHHHHhC
Q 008512 426 EGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLG--FGR----SEKPNIVYTE-------LMWSELLRDFTVEVV 492 (563)
Q Consensus 426 ~~~~vlllHG~~~~~~~~~~~~~~l~~~g~~Vi~~D~~G--~G~----S~~~~~~~~~-------~~~~~~l~~~l~~l~ 492 (563)
..|+||++||+|++..++.++...+.. ++.++.+.-+- .|. +......++. +.+.+.+....++.+
T Consensus 17 ~~~~iilLHG~Ggde~~~~~~~~~~~P-~~~~is~rG~v~~~g~~~~f~~~~~~~~d~edl~~~~~~~~~~l~~~~~~~g 95 (207)
T COG0400 17 AAPLLILLHGLGGDELDLVPLPELILP-NATLVSPRGPVAENGGPRFFRRYDEGSFDQEDLDLETEKLAEFLEELAEEYG 95 (207)
T ss_pred CCcEEEEEecCCCChhhhhhhhhhcCC-CCeEEcCCCCccccCcccceeecCCCccchhhHHHHHHHHHHHHHHHHHHhC
Confidence 366899999999999999886666655 46666642110 010 0011112233 334555555556666
Q ss_pred C--CcEEEEEechhHHHHHHHHhc-cCcccEEEEEcCcCChH
Q 008512 493 G--EPVHLIGNSIGGMFLSTNLTR-GKLYAFLLSVNYLLSRS 531 (563)
Q Consensus 493 ~--~~i~lvGhS~Gg~ia~~~a~~-~~~~~~v~~~~~~~~~~ 531 (563)
. .+++++|+|.||++++..... +...+.+++..++....
T Consensus 96 i~~~~ii~~GfSqGA~ial~~~l~~~~~~~~ail~~g~~~~~ 137 (207)
T COG0400 96 IDSSRIILIGFSQGANIALSLGLTLPGLFAGAILFSGMLPLE 137 (207)
T ss_pred CChhheEEEecChHHHHHHHHHHhCchhhccchhcCCcCCCC
Confidence 6 889999999999999999877 77777777766655443
No 130
>PF10503 Esterase_phd: Esterase PHB depolymerase
Probab=97.74 E-value=0.00033 Score=68.22 Aligned_cols=102 Identities=19% Similarity=0.131 Sum_probs=67.2
Q ss_pred CCeEEEECCCCCChHHHHHH--HHHHhh-CCCEEEEEcCCCCCCCC------CC---CcCCCHHHHHHHHHHHHHHhCC-
Q 008512 427 GPAILLVHGFGAFLEHYRDN--IYDIAD-GGNRVWAITLLGFGRSE------KP---NIVYTELMWSELLRDFTVEVVG- 493 (563)
Q Consensus 427 ~~~vlllHG~~~~~~~~~~~--~~~l~~-~g~~Vi~~D~~G~G~S~------~~---~~~~~~~~~~~~l~~~l~~l~~- 493 (563)
.|.||++||.+++.+.|... ...+++ .||-|+.++-....... .. ....+...+.+.+.+++.+..+
T Consensus 16 ~PLVv~LHG~~~~a~~~~~~s~~~~lAd~~GfivvyP~~~~~~~~~~cw~w~~~~~~~g~~d~~~i~~lv~~v~~~~~iD 95 (220)
T PF10503_consen 16 VPLVVVLHGCGQSAEDFAAGSGWNALADREGFIVVYPEQSRRANPQGCWNWFSDDQQRGGGDVAFIAALVDYVAARYNID 95 (220)
T ss_pred CCEEEEeCCCCCCHHHHHhhcCHHHHhhcCCeEEEcccccccCCCCCcccccccccccCccchhhHHHHHHhHhhhcccC
Confidence 47899999999999887643 344554 58888888753211000 00 0111223344444455555544
Q ss_pred -CcEEEEEechhHHHHHHHHhc-cCcccEEEEEcCcC
Q 008512 494 -EPVHLIGNSIGGMFLSTNLTR-GKLYAFLLSVNYLL 528 (563)
Q Consensus 494 -~~i~lvGhS~Gg~ia~~~a~~-~~~~~~v~~~~~~~ 528 (563)
.+|++.|+|.||+++..++.. |++++++.+..+..
T Consensus 96 ~~RVyv~G~S~Gg~ma~~la~~~pd~faa~a~~sG~~ 132 (220)
T PF10503_consen 96 PSRVYVTGLSNGGMMANVLACAYPDLFAAVAVVSGVP 132 (220)
T ss_pred CCceeeEEECHHHHHHHHHHHhCCccceEEEeecccc
Confidence 689999999999999998876 99998888766643
No 131
>PF06028 DUF915: Alpha/beta hydrolase of unknown function (DUF915); InterPro: IPR010315 This family consists of bacterial proteins of unknown function, which are hydrolase-like.; PDB: 3LP5_A 3FLE_A 3DS8_A.
Probab=97.71 E-value=6.3e-05 Score=74.87 Aligned_cols=102 Identities=18% Similarity=0.292 Sum_probs=62.6
Q ss_pred CCeEEEECCCCCChHHHHHHHHHHh-hCCC--EEE--EEcCCCC----CCC----CCC-------CcC-CCHHHHHHHHH
Q 008512 427 GPAILLVHGFGAFLEHYRDNIYDIA-DGGN--RVW--AITLLGF----GRS----EKP-------NIV-YTELMWSELLR 485 (563)
Q Consensus 427 ~~~vlllHG~~~~~~~~~~~~~~l~-~~g~--~Vi--~~D~~G~----G~S----~~~-------~~~-~~~~~~~~~l~ 485 (563)
..|.|||||++|+...+..++..+. +.|. .++ .++--|+ |.= ..| ... .+....+..+.
T Consensus 11 ~tPTifihG~~gt~~s~~~mi~~~~~~~~~~~~~l~v~V~~~G~v~~~G~~~~~~~nPiIqV~F~~n~~~~~~~qa~wl~ 90 (255)
T PF06028_consen 11 TTPTIFIHGYGGTANSFNHMINRLENKQGVAQKVLTVTVSKNGKVKVSGKLSKNAKNPIIQVNFEDNRNANYKKQAKWLK 90 (255)
T ss_dssp -EEEEEE--TTGGCCCCHHHHHHHHHCSTS-S-EEEEEEETTSEEEEES---TT-SS-EEEEEESSTT-CHHHHHHHHHH
T ss_pred CCcEEEECCCCCChhHHHHHHHHHHhhcCCCceEEEEEECCCCeEEEeeecCCCCCCCEEEEEecCCCcCCHHHHHHHHH
Confidence 4589999999999999999999997 5543 232 2333343 221 111 011 24666677777
Q ss_pred HHHHHh----CCCcEEEEEechhHHHHHHHHhc-------cCcccEEEEEcCcC
Q 008512 486 DFTVEV----VGEPVHLIGNSIGGMFLSTNLTR-------GKLYAFLLSVNYLL 528 (563)
Q Consensus 486 ~~l~~l----~~~~i~lvGhS~Gg~ia~~~a~~-------~~~~~~v~~~~~~~ 528 (563)
.++..+ +..++.+|||||||+.++.++.. |++.+.|.+..++.
T Consensus 91 ~vl~~L~~~Y~~~~~N~VGHSmGg~~~~~yl~~~~~~~~~P~l~K~V~Ia~pfn 144 (255)
T PF06028_consen 91 KVLKYLKKKYHFKKFNLVGHSMGGLSWTYYLENYGNDKNLPKLNKLVTIAGPFN 144 (255)
T ss_dssp HHHHHHHHCC--SEEEEEEETHHHHHHHHHHHHCTTGTTS-EEEEEEEES--TT
T ss_pred HHHHHHHHhcCCCEEeEEEECccHHHHHHHHHHhccCCCCcccceEEEeccccC
Confidence 776655 57899999999999999998753 34555666655544
No 132
>KOG2624 consensus Triglyceride lipase-cholesterol esterase [Lipid transport and metabolism]
Probab=97.67 E-value=9.6e-05 Score=77.95 Aligned_cols=123 Identities=20% Similarity=0.235 Sum_probs=82.9
Q ss_pred eeEEEE-EECCeEEEE--EEeC-CCCCeEEEECCCCCChHHHHH------HHHHHhhCCCEEEEEcCCCCCCCCCC----
Q 008512 406 YSTRIW-RWNGYQIQY--TVAG-KEGPAILLVHGFGAFLEHYRD------NIYDIADGGNRVWAITLLGFGRSEKP---- 471 (563)
Q Consensus 406 ~~~~~~-~~~g~~l~y--~~~g-~~~~~vlllHG~~~~~~~~~~------~~~~l~~~g~~Vi~~D~~G~G~S~~~---- 471 (563)
.+.+.+ +.||+-+.. ...+ .++|+|+|.||+.+++..|.. ++-.|+.+||+|+.-+.||--.|.+-
T Consensus 48 ~E~h~V~T~DgYiL~lhRIp~~~~~rp~Vll~HGLl~sS~~Wv~n~p~~sLaf~LadaGYDVWLgN~RGn~ySr~h~~l~ 127 (403)
T KOG2624|consen 48 VEEHEVTTEDGYILTLHRIPRGKKKRPVVLLQHGLLASSSSWVLNGPEQSLAFLLADAGYDVWLGNNRGNTYSRKHKKLS 127 (403)
T ss_pred eEEEEEEccCCeEEEEeeecCCCCCCCcEEEeeccccccccceecCccccHHHHHHHcCCceeeecCcCcccchhhcccC
Confidence 334333 346663332 2223 458999999999999888873 34457888999999999997776431
Q ss_pred C---c---CCCH-----HHHHHHHHHHHHHhCCCcEEEEEechhHHHHHHHHhc-cC----cccEEEEEcCcC
Q 008512 472 N---I---VYTE-----LMWSELLRDFTVEVVGEPVHLIGNSIGGMFLSTNLTR-GK----LYAFLLSVNYLL 528 (563)
Q Consensus 472 ~---~---~~~~-----~~~~~~l~~~l~~l~~~~i~lvGhS~Gg~ia~~~a~~-~~----~~~~v~~~~~~~ 528 (563)
+ . .+++ .|+.+.|..+++..+.++++.+|||.|+.+...++.. |+ +....+++|...
T Consensus 128 ~~~~~~FW~FS~~Em~~yDLPA~IdyIL~~T~~~kl~yvGHSQGtt~~fv~lS~~p~~~~kI~~~~aLAP~~~ 200 (403)
T KOG2624|consen 128 PSSDKEFWDFSWHEMGTYDLPAMIDYILEKTGQEKLHYVGHSQGTTTFFVMLSERPEYNKKIKSFIALAPAAF 200 (403)
T ss_pred CcCCcceeecchhhhhhcCHHHHHHHHHHhccccceEEEEEEccchhheehhcccchhhhhhheeeeecchhh
Confidence 1 1 1233 3456666666677778999999999999999777664 44 444555555543
No 133
>PRK04940 hypothetical protein; Provisional
Probab=97.66 E-value=0.00031 Score=65.77 Aligned_cols=94 Identities=14% Similarity=0.073 Sum_probs=56.4
Q ss_pred EEEECCCCCChHH--HHH-HHHHHhhCCCEEEEEcCCCCCCCCCCCcCCCHHHHHHHHHHHHHHhC----CCcEEEEEec
Q 008512 430 ILLVHGFGAFLEH--YRD-NIYDIADGGNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFTVEVV----GEPVHLIGNS 502 (563)
Q Consensus 430 vlllHG~~~~~~~--~~~-~~~~l~~~g~~Vi~~D~~G~G~S~~~~~~~~~~~~~~~l~~~l~~l~----~~~i~lvGhS 502 (563)
||++|||.++... ... ....+ ..+.+++ +++ ..+.....+.+.+.+..+. .+++.|||+|
T Consensus 2 IlYlHGF~SS~~S~~~Ka~~l~~~-~p~~~~~--~l~----------~~~P~~a~~~l~~~i~~~~~~~~~~~~~liGSS 68 (180)
T PRK04940 2 IIYLHGFDSTSPGNHEKVLQLQFI-DPDVRLI--SYS----------TLHPKHDMQHLLKEVDKMLQLSDDERPLICGVG 68 (180)
T ss_pred EEEeCCCCCCCCccHHHHHhheee-CCCCeEE--ECC----------CCCHHHHHHHHHHHHHHhhhccCCCCcEEEEeC
Confidence 7999999987766 431 22223 2234444 332 1223333344445554321 2579999999
Q ss_pred hhHHHHHHHHhccCcccEEEEEcCcCChHHHHHHh
Q 008512 503 IGGMFLSTNLTRGKLYAFLLSVNYLLSRSIICRLF 537 (563)
Q Consensus 503 ~Gg~ia~~~a~~~~~~~~v~~~~~~~~~~~~~~~~ 537 (563)
|||+.|..++.+.. .++|++-|.+.+...+....
T Consensus 69 LGGyyA~~La~~~g-~~aVLiNPAv~P~~~L~~~i 102 (180)
T PRK04940 69 LGGYWAERIGFLCG-IRQVIFNPNLFPEENMEGKI 102 (180)
T ss_pred hHHHHHHHHHHHHC-CCEEEECCCCChHHHHHHHh
Confidence 99999999998855 35666666666655444443
No 134
>COG3509 LpqC Poly(3-hydroxybutyrate) depolymerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.65 E-value=0.00063 Score=67.69 Aligned_cols=124 Identities=20% Similarity=0.125 Sum_probs=83.5
Q ss_pred CeeEEEEEECCeEEEEEEeCCC-----CCeEEEECCCCCChHHHHHHH--HHHh-hCCCEEEEEc-CCCC------CCCC
Q 008512 405 VYSTRIWRWNGYQIQYTVAGKE-----GPAILLVHGFGAFLEHYRDNI--YDIA-DGGNRVWAIT-LLGF------GRSE 469 (563)
Q Consensus 405 ~~~~~~~~~~g~~l~y~~~g~~-----~~~vlllHG~~~~~~~~~~~~--~~l~-~~g~~Vi~~D-~~G~------G~S~ 469 (563)
..+...+.++|.+..|...-+. .|.||++||-.++..-+.... +.++ ..||-|+.+| ++++ |.+.
T Consensus 34 ~~~~~s~~~~g~~r~y~l~vP~g~~~~apLvv~LHG~~~sgag~~~~sg~d~lAd~~gFlV~yPdg~~~~wn~~~~~~~~ 113 (312)
T COG3509 34 GSSVASFDVNGLKRSYRLYVPPGLPSGAPLVVVLHGSGGSGAGQLHGTGWDALADREGFLVAYPDGYDRAWNANGCGNWF 113 (312)
T ss_pred cCCccccccCCCccceEEEcCCCCCCCCCEEEEEecCCCChHHhhcccchhhhhcccCcEEECcCccccccCCCcccccC
Confidence 3444555667777666655432 468999999999887776553 5555 4589999985 3322 3331
Q ss_pred CCC----cCCCHHHHHHHHHHHHHHhCCC--cEEEEEechhHHHHHHHHhc-cCcccEEEEEcCcC
Q 008512 470 KPN----IVYTELMWSELLRDFTVEVVGE--PVHLIGNSIGGMFLSTNLTR-GKLYAFLLSVNYLL 528 (563)
Q Consensus 470 ~~~----~~~~~~~~~~~l~~~l~~l~~~--~i~lvGhS~Gg~ia~~~a~~-~~~~~~v~~~~~~~ 528 (563)
.+. ...+...+.+.+..++.+.+++ +|++.|.|-||.++..++.. +++.+++..+.+..
T Consensus 114 ~p~~~~~g~ddVgflr~lva~l~~~~gidp~RVyvtGlS~GG~Ma~~lac~~p~~faa~A~VAg~~ 179 (312)
T COG3509 114 GPADRRRGVDDVGFLRALVAKLVNEYGIDPARVYVTGLSNGGRMANRLACEYPDIFAAIAPVAGLL 179 (312)
T ss_pred CcccccCCccHHHHHHHHHHHHHHhcCcCcceEEEEeeCcHHHHHHHHHhcCcccccceeeeeccc
Confidence 121 1223344556666667777764 89999999999999999887 99888877766654
No 135
>TIGR01849 PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, intracellular. This model represents an intracellular depolymerase for polyhydroxyalkanoate (PHA), a carbon and energy storing polyester that accumulates in granules in many bacterial species when carbon sources are abundant but other nutrients are limiting. This family is named for PHAs generally, rather than polyhydroxybutyrate (PHB) specificially as in Ralstonia eutropha H16, to avoid overcalling chemical specificity in other species. Note that this family lacks the classic GXSXG lipase motif and instead shows weak similarity to some
Probab=97.63 E-value=0.001 Score=70.43 Aligned_cols=100 Identities=10% Similarity=0.069 Sum_probs=78.0
Q ss_pred CeEEEECCCCCChHHHH-HHHHHHhhCCCEEEEEcCCCCCCCCCCCcCCCHHHHHHHHHHHHHHhCCCcEEEEEechhHH
Q 008512 428 PAILLVHGFGAFLEHYR-DNIYDIADGGNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFTVEVVGEPVHLIGNSIGGM 506 (563)
Q Consensus 428 ~~vlllHG~~~~~~~~~-~~~~~l~~~g~~Vi~~D~~G~G~S~~~~~~~~~~~~~~~l~~~l~~l~~~~i~lvGhS~Gg~ 506 (563)
++||++.-+.++...+. .+++.|.. |+.|+..|+.--+..+.....++++++++.+.++++.++.+ ++++|.|+||.
T Consensus 103 ~pvLiV~Pl~g~~~~L~RS~V~~Ll~-g~dVYl~DW~~p~~vp~~~~~f~ldDYi~~l~~~i~~~G~~-v~l~GvCqgG~ 180 (406)
T TIGR01849 103 PAVLIVAPMSGHYATLLRSTVEALLP-DHDVYITDWVNARMVPLSAGKFDLEDYIDYLIEFIRFLGPD-IHVIAVCQPAV 180 (406)
T ss_pred CcEEEEcCCchHHHHHHHHHHHHHhC-CCcEEEEeCCCCCCCchhcCCCCHHHHHHHHHHHHHHhCCC-CcEEEEchhhH
Confidence 69999999998866554 78899999 99999999986665544456789999999999999999877 99999999999
Q ss_pred HHHHHHhc------cCcccEE-EEEcCcCC
Q 008512 507 FLSTNLTR------GKLYAFL-LSVNYLLS 529 (563)
Q Consensus 507 ia~~~a~~------~~~~~~v-~~~~~~~~ 529 (563)
+++.+++. |..++.+ ++..++..
T Consensus 181 ~~laa~Al~a~~~~p~~~~sltlm~~PID~ 210 (406)
T TIGR01849 181 PVLAAVALMAENEPPAQPRSMTLMGGPIDA 210 (406)
T ss_pred HHHHHHHHHHhcCCCCCcceEEEEecCccC
Confidence 97765431 3345554 45555443
No 136
>KOG3975 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.63 E-value=0.0008 Score=65.12 Aligned_cols=102 Identities=19% Similarity=0.249 Sum_probs=77.8
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHHhhC---CCEEEEEcCCCCCCCC---CC------CcCCCHHHHHHHHHHHHHHhC
Q 008512 425 KEGPAILLVHGFGAFLEHYRDNIYDIADG---GNRVWAITLLGFGRSE---KP------NIVYTELMWSELLRDFTVEVV 492 (563)
Q Consensus 425 ~~~~~vlllHG~~~~~~~~~~~~~~l~~~---g~~Vi~~D~~G~G~S~---~~------~~~~~~~~~~~~l~~~l~~l~ 492 (563)
.+++.|++|.|.+|....|.+++..|... ...|+.+...||..-+ .. ..-+++++.++.-.+++++.-
T Consensus 27 ~~~~li~~IpGNPG~~gFY~~F~~~L~~~l~~r~~~wtIsh~~H~~~P~sl~~~~s~~~~eifsL~~QV~HKlaFik~~~ 106 (301)
T KOG3975|consen 27 EDKPLIVWIPGNPGLLGFYTEFARHLHLNLIDRLPVWTISHAGHALMPASLREDHSHTNEEIFSLQDQVDHKLAFIKEYV 106 (301)
T ss_pred CCceEEEEecCCCCchhHHHHHHHHHHHhcccccceeEEeccccccCCcccccccccccccccchhhHHHHHHHHHHHhC
Confidence 34678999999999999999999887653 2559999888886543 11 134789999999999998874
Q ss_pred --CCcEEEEEechhHHHHHHHHhc----cCcccEEEEEcC
Q 008512 493 --GEPVHLIGNSIGGMFLSTNLTR----GKLYAFLLSVNY 526 (563)
Q Consensus 493 --~~~i~lvGhS~Gg~ia~~~a~~----~~~~~~v~~~~~ 526 (563)
..+++++|||.|+++.+..... ..+.+++++.|.
T Consensus 107 Pk~~ki~iiGHSiGaYm~Lqil~~~k~~~~vqKa~~LFPT 146 (301)
T KOG3975|consen 107 PKDRKIYIIGHSIGAYMVLQILPSIKLVFSVQKAVLLFPT 146 (301)
T ss_pred CCCCEEEEEecchhHHHHHHHhhhcccccceEEEEEecch
Confidence 4789999999999999998763 234455555443
No 137
>COG3046 Uncharacterized protein related to deoxyribodipyrimidine photolyase [General function prediction only]
Probab=97.63 E-value=0.0019 Score=66.49 Aligned_cols=260 Identities=17% Similarity=0.171 Sum_probs=138.7
Q ss_pred CcEEEEEcCCCCCcCCHHHHHHHhCCCeEEEEEECCcccc---cCCHhHHHHHHHHHHHHHHHHHhcCCcEEEEEcC---
Q 008512 45 GSAVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILS---RYSNEMLELVIFALEDLRKSLKEQGSDLMIRFGR--- 118 (563)
Q Consensus 45 ~~~l~WfrrDLRl~DN~aL~~A~~~~~vl~vfi~dp~~~~---~~~~~r~~Fl~~sL~~L~~~L~~~g~~L~v~~g~--- 118 (563)
+.+++|.=.|.=.++++||.. ......++.| +-..+. ++-..+..++..+++.+.+.|+..|.......-+
T Consensus 2 ~~~~~lvLgdQL~~~~~al~~--d~~~~~vllv-E~~~~a~~~r~HkqKl~lv~aAMR~Fad~LraeG~~V~Y~~~~~~~ 78 (505)
T COG3046 2 MSSVVLVLGDQLSEDHSALGD--DRSQDGVLLV-ESAAEARYRRHHKQKLVLVFAAMRHFADELRAEGLKVRYERADDNS 78 (505)
T ss_pred CceEEEEeccccccccchhcc--CcccCcEEEe-hhHhHhhhhhcchhhhHHHHHHHHHHHHHHhhCCceeEEEEcCCcc
Confidence 468899999999999988865 2122223333 222211 2334566789999999999999999987665543
Q ss_pred hHHHHHHHHHHhCccEEEEccccChhHHHHHHHHHHHHHhcCCCCCCceeeeeCc-ccccCCCC-----CCCCcCchhhH
Q 008512 119 VENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDGKPKICLWQT-PFYDIKNL-----NDLPVSHNEFR 192 (563)
Q Consensus 119 ~~~~l~~l~~~~~a~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~~~~~~~~-~L~~~~~~-----~~~p~~f~~f~ 192 (563)
....|.+.++.+..+.|++.+--......+.+.+... .|| ++..+.+. -|....+. +..+-....|+
T Consensus 79 ~~~~l~~~l~~~~~d~~~~~~p~~~~l~~~m~~L~~~---~g~----~i~~~~~~~Fl~s~a~f~~w~~~~k~~lme~FY 151 (505)
T COG3046 79 FGGELRRALEAYPGDRVQVQEPGDHRLEARMKSLSMA---LGI----EITEVENPHFLCSRAEFDAWAGDRKPLLMESFY 151 (505)
T ss_pred cchHHHHHHHhcCCCeEEEecCcchhHHHHHHhhhhh---cCc----eeEEecCcceecCHHHhhhhhccCcchhhHHHH
Confidence 3567777888999999988776555544444444333 333 55555433 33333222 22222334444
Q ss_pred ----hccCC-CC--CC------CCCCCCCCCCCCCCCCCCCChhhhhhcccCCccchhhhhhhhccchhhHHHHHHhhcc
Q 008512 193 ----KLQRP-LT--SP------ILPPTLAGAKLEADWGPLPTFDELKEFVNENPWKLEESWTLINNMSAETILTDKLSKL 259 (563)
Q Consensus 193 ----k~~~~-~~--~p------l~~p~l~~~~~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~ 259 (563)
|+..- +. .| +.+-.-.+++..+ . .|. -+++..++ + .....+.+++.
T Consensus 152 r~mRkr~g~LM~~dqP~GGrWnFDaeNR~~~~pdL--~-~P~--pl~fppd~-~---------------vq~v~e~Ve~~ 210 (505)
T COG3046 152 RRMRKRTGILMEDDQPEGGRWNFDAENRKKLPPDL--L-PPK--PLKFPPDE-I---------------VQEVKERVERL 210 (505)
T ss_pred HHHHHhhceeccCCCCCCCcCCcCcccccCCCCcC--C-CCC--CCCCCCcc-h---------------hHHHHHHHHhh
Confidence 33110 11 11 1111000000000 0 010 01110000 0 00111122211
Q ss_pred ccccccCCCCCCCCcccCCCCccccCCCCcccCChHHHHHHHHHHHHhhcCCccchHHHHHHhhccccCC-CCCCCcccc
Q 008512 260 GKRSKRNLNNQHSPRKRLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRDDWQELQEKLRNAESR-DGASFATLF 338 (563)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gGe~aAl~~L~~fl~~~~~~~l~~Y~~~rn~~r~~~~~-p~~~~tS~L 338 (563)
++.. +....+-.|+--.+.|++.|++|+. ..|.++..-.+. .+. ...-..|.|
T Consensus 211 -------f~~~-----------~G~~e~F~wpvtr~~A~~~L~~Fi~----~~L~nFG~yQDa----m~~d~~~L~HSll 264 (505)
T COG3046 211 -------FPDN-----------FGQVEGFGWPVTRTQALRALKHFIA----DRLPNFGSYQDA----MSADDPHLWHSLL 264 (505)
T ss_pred -------CCCC-----------CCccccCCCCCCHHHHHHHHHHHHH----HhhhcCCcHHHH----HhcCCchhHHHHH
Confidence 0000 0000111388889999999999993 666665553322 111 123578999
Q ss_pred CcccccCcCchhHHHHHHHHhhh
Q 008512 339 GPALCLGIISRRGVHYEAIKFEK 361 (563)
Q Consensus 339 SPyL~~G~IS~R~v~~~~~~~~~ 361 (563)
||||..|-|+|.+|...+.+...
T Consensus 265 S~alNigLL~PleVi~Aa~~Ay~ 287 (505)
T COG3046 265 SFALNIGLLTPLEVIRAALKAYR 287 (505)
T ss_pred HHHhhccCCCHHHHHHHHHHhhc
Confidence 99999999999999988855543
No 138
>smart00824 PKS_TE Thioesterase. Peptide synthetases are involved in the non-ribosomal synthesis of peptide antibiotics. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates. There are also modules within the peptide synthetases that also share this similarity. With respect to antibiotic production, thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Thioesterases (non-integrated) have molecular masses of 25-29 kDa.
Probab=97.61 E-value=0.0006 Score=64.71 Aligned_cols=92 Identities=21% Similarity=0.220 Sum_probs=65.5
Q ss_pred EECCCC--CChHHHHHHHHHHhhCCCEEEEEcCCCCCCCCCCCcCCCHHHHHHHHHHHHH-HhCCCcEEEEEechhHHHH
Q 008512 432 LVHGFG--AFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFTV-EVVGEPVHLIGNSIGGMFL 508 (563)
Q Consensus 432 llHG~~--~~~~~~~~~~~~l~~~g~~Vi~~D~~G~G~S~~~~~~~~~~~~~~~l~~~l~-~l~~~~i~lvGhS~Gg~ia 508 (563)
++|+.+ ++...|..+...+.. ++.|+++|++|+|.+... ..+.+.+++.....+. .....+++++||||||.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~l~~-~~~v~~~~~~g~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~l~g~s~Gg~~a 78 (212)
T smart00824 2 CFPSTAAPSGPHEYARLAAALRG-RRDVSALPLPGFGPGEPL--PASADALVEAQAEAVLRAAGGRPFVLVGHSSGGLLA 78 (212)
T ss_pred ccCCCCCCCcHHHHHHHHHhcCC-CccEEEecCCCCCCCCCC--CCCHHHHHHHHHHHHHHhcCCCCeEEEEECHHHHHH
Confidence 455544 677889899998887 699999999999865433 3456666665554443 3446789999999999999
Q ss_pred HHHHhc----cCcccEEEEEcC
Q 008512 509 STNLTR----GKLYAFLLSVNY 526 (563)
Q Consensus 509 ~~~a~~----~~~~~~v~~~~~ 526 (563)
...+.. +..+..++++..
T Consensus 79 ~~~a~~l~~~~~~~~~l~~~~~ 100 (212)
T smart00824 79 HAVAARLEARGIPPAAVVLLDT 100 (212)
T ss_pred HHHHHHHHhCCCCCcEEEEEcc
Confidence 888764 344555555443
No 139
>COG4188 Predicted dienelactone hydrolase [General function prediction only]
Probab=97.61 E-value=0.00017 Score=74.20 Aligned_cols=87 Identities=20% Similarity=0.159 Sum_probs=62.8
Q ss_pred CCeEEEECCCCCChHHHHHHHHHHhhCCCEEEEEcCCCC--CCCCCCCcC---CC---HHHHHHHHHHHHHHh-------
Q 008512 427 GPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGF--GRSEKPNIV---YT---ELMWSELLRDFTVEV------- 491 (563)
Q Consensus 427 ~~~vlllHG~~~~~~~~~~~~~~l~~~g~~Vi~~D~~G~--G~S~~~~~~---~~---~~~~~~~l~~~l~~l------- 491 (563)
-|.|+|-||.++....|..+++.+++.||-|.++|++|- |........ +. +-+...|+..+++.+
T Consensus 71 ~PlvvlshG~Gs~~~~f~~~A~~lAs~Gf~Va~~~hpgs~~~~~~~~~~~~~~~~p~~~~erp~dis~lLd~L~~~~~sP 150 (365)
T COG4188 71 LPLVVLSHGSGSYVTGFAWLAEHLASYGFVVAAPDHPGSNAGGAPAAYAGPGSYAPAEWWERPLDISALLDALLQLTASP 150 (365)
T ss_pred CCeEEecCCCCCCccchhhhHHHHhhCceEEEeccCCCcccccCChhhcCCcccchhhhhcccccHHHHHHHHHHhhcCc
Confidence 578999999999999999999999999999999999984 333321111 11 112233333333322
Q ss_pred ------CCCcEEEEEechhHHHHHHHHh
Q 008512 492 ------VGEPVHLIGNSIGGMFLSTNLT 513 (563)
Q Consensus 492 ------~~~~i~lvGhS~Gg~ia~~~a~ 513 (563)
...+|.++|||+||+.++..+.
T Consensus 151 ~l~~~ld~~~Vgv~GhS~GG~T~m~laG 178 (365)
T COG4188 151 ALAGRLDPQRVGVLGHSFGGYTAMELAG 178 (365)
T ss_pred ccccccCccceEEEecccccHHHHHhcc
Confidence 2368999999999999998764
No 140
>KOG4627 consensus Kynurenine formamidase [Amino acid transport and metabolism]
Probab=97.60 E-value=0.00011 Score=68.90 Aligned_cols=114 Identities=11% Similarity=0.087 Sum_probs=72.7
Q ss_pred EEEeCC--CCCeEEEECCC---CCChHHHHHHHHHHhhCCCEEEEEcCCCCCCCCCCC-cCCCHHHHHHHHHHHHHHhCC
Q 008512 420 YTVAGK--EGPAILLVHGF---GAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPN-IVYTELMWSELLRDFTVEVVG 493 (563)
Q Consensus 420 y~~~g~--~~~~vlllHG~---~~~~~~~~~~~~~l~~~g~~Vi~~D~~G~G~S~~~~-~~~~~~~~~~~l~~~l~~l~~ 493 (563)
...||+ ..+.+|||||. .++..+-..++..+.+.||+|.+. |+|.+.... ..-++.+....+.-+++....
T Consensus 58 VDIwg~~~~~klfIfIHGGYW~~g~rk~clsiv~~a~~~gY~vasv---gY~l~~q~htL~qt~~~~~~gv~filk~~~n 134 (270)
T KOG4627|consen 58 VDIWGSTNQAKLFIFIHGGYWQEGDRKMCLSIVGPAVRRGYRVASV---GYNLCPQVHTLEQTMTQFTHGVNFILKYTEN 134 (270)
T ss_pred EEEecCCCCccEEEEEecchhhcCchhcccchhhhhhhcCeEEEEe---ccCcCcccccHHHHHHHHHHHHHHHHHhccc
Confidence 345554 37789999995 244444445566667779999997 555554321 122344455555555565554
Q ss_pred -CcEEEEEechhHHHHHHHHhc--cCcccEEEEEcCcCChHHHHHH
Q 008512 494 -EPVHLIGNSIGGMFLSTNLTR--GKLYAFLLSVNYLLSRSIICRL 536 (563)
Q Consensus 494 -~~i~lvGhS~Gg~ia~~~a~~--~~~~~~v~~~~~~~~~~~~~~~ 536 (563)
+.+.+-|||.|+++++.++.+ .+++.++++..+..........
T Consensus 135 ~k~l~~gGHSaGAHLa~qav~R~r~prI~gl~l~~GvY~l~EL~~t 180 (270)
T KOG4627|consen 135 TKVLTFGGHSAGAHLAAQAVMRQRSPRIWGLILLCGVYDLRELSNT 180 (270)
T ss_pred ceeEEEcccchHHHHHHHHHHHhcCchHHHHHHHhhHhhHHHHhCC
Confidence 557778999999999998875 5566666666665555444433
No 141
>PF08538 DUF1749: Protein of unknown function (DUF1749); InterPro: IPR013744 This is a plant and fungal family of unknown function. This family contains many hypothetical proteins. ; PDB: 2Q0X_B.
Probab=97.59 E-value=0.00048 Score=69.54 Aligned_cols=118 Identities=16% Similarity=0.138 Sum_probs=68.4
Q ss_pred EEEEECCeEEEEEEeCCC-CCeEEEECCCCCC---hHHHHHHHHHHhhCCCEEEEEcCC----CCCCCCCCCcCCCHHHH
Q 008512 409 RIWRWNGYQIQYTVAGKE-GPAILLVHGFGAF---LEHYRDNIYDIADGGNRVWAITLL----GFGRSEKPNIVYTELMW 480 (563)
Q Consensus 409 ~~~~~~g~~l~y~~~g~~-~~~vlllHG~~~~---~~~~~~~~~~l~~~g~~Vi~~D~~----G~G~S~~~~~~~~~~~~ 480 (563)
+.+..+-..+.|...+.. ...||||-|+++. ......+++.|...||.|+-+-++ |+|.+ +++.-
T Consensus 14 h~Y~~~~~afe~~~~~~~~~~~llfIGGLtDGl~tvpY~~~La~aL~~~~wsl~q~~LsSSy~G~G~~-------SL~~D 86 (303)
T PF08538_consen 14 HHYTPKLVAFEFTSSSSSAPNALLFIGGLTDGLLTVPYLPDLAEALEETGWSLFQVQLSSSYSGWGTS-------SLDRD 86 (303)
T ss_dssp EEECCTTEEEEEEEE-TTSSSEEEEE--TT--TT-STCHHHHHHHHT-TT-EEEEE--GGGBTTS-S---------HHHH
T ss_pred EEECCCCeEEEecCCCCCCCcEEEEECCCCCCCCCCchHHHHHHHhccCCeEEEEEEecCccCCcCcc-------hhhhH
Confidence 333444455566555433 4589999999864 344567888887779999998654 55543 45555
Q ss_pred HHHHHHHHHHh--------CCCcEEEEEechhHHHHHHHHhc--c----CcccEEEEEcCcCChHHH
Q 008512 481 SELLRDFTVEV--------VGEPVHLIGNSIGGMFLSTNLTR--G----KLYAFLLSVNYLLSRSII 533 (563)
Q Consensus 481 ~~~l~~~l~~l--------~~~~i~lvGhS~Gg~ia~~~a~~--~----~~~~~v~~~~~~~~~~~~ 533 (563)
+++|.++++.+ +.++|+|+|||.|..-++.|+.. + ..+..+++-.++.+++.+
T Consensus 87 ~~eI~~~v~ylr~~~~g~~~~~kIVLmGHSTGcQdvl~Yl~~~~~~~~~~~VdG~ILQApVSDREa~ 153 (303)
T PF08538_consen 87 VEEIAQLVEYLRSEKGGHFGREKIVLMGHSTGCQDVLHYLSSPNPSPSRPPVDGAILQAPVSDREAI 153 (303)
T ss_dssp HHHHHHHHHHHHHHS------S-EEEEEECCHHHHHHHHHHH-TT---CCCEEEEEEEEE---TTST
T ss_pred HHHHHHHHHHHHHhhccccCCccEEEEecCCCcHHHHHHHhccCccccccceEEEEEeCCCCChhHh
Confidence 55665555433 34789999999999999999875 2 456777776666665433
No 142
>COG0657 Aes Esterase/lipase [Lipid metabolism]
Probab=97.57 E-value=0.00043 Score=71.30 Aligned_cols=85 Identities=16% Similarity=0.067 Sum_probs=58.8
Q ss_pred CCeEEEECCCC---CChHHH-HHHHHHHhhCCCEEEEEcCCCCCCCCCCCcCCCHHHHHHHHHHHHHH---hC--CCcEE
Q 008512 427 GPAILLVHGFG---AFLEHY-RDNIYDIADGGNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFTVE---VV--GEPVH 497 (563)
Q Consensus 427 ~~~vlllHG~~---~~~~~~-~~~~~~l~~~g~~Vi~~D~~G~G~S~~~~~~~~~~~~~~~l~~~l~~---l~--~~~i~ 497 (563)
.|+||++||.+ ++.... ..+...+...|+.|+++|||-.-+- .....+++..+.+..+.++ ++ .++|.
T Consensus 79 ~p~vly~HGGg~~~g~~~~~~~~~~~~~~~~g~~vv~vdYrlaPe~---~~p~~~~d~~~a~~~l~~~~~~~g~dp~~i~ 155 (312)
T COG0657 79 APVVLYLHGGGWVLGSLRTHDALVARLAAAAGAVVVSVDYRLAPEH---PFPAALEDAYAAYRWLRANAAELGIDPSRIA 155 (312)
T ss_pred CcEEEEEeCCeeeecChhhhHHHHHHHHHHcCCEEEecCCCCCCCC---CCCchHHHHHHHHHHHHhhhHhhCCCccceE
Confidence 68999999975 445555 3455556667999999999954322 2233455544444444443 33 47899
Q ss_pred EEEechhHHHHHHHHhc
Q 008512 498 LIGNSIGGMFLSTNLTR 514 (563)
Q Consensus 498 lvGhS~Gg~ia~~~a~~ 514 (563)
++|+|-||.+++.++..
T Consensus 156 v~GdSAGG~La~~~a~~ 172 (312)
T COG0657 156 VAGDSAGGHLALALALA 172 (312)
T ss_pred EEecCcccHHHHHHHHH
Confidence 99999999999998764
No 143
>KOG1553 consensus Predicted alpha/beta hydrolase BAT5 [General function prediction only]
Probab=97.52 E-value=0.00034 Score=70.40 Aligned_cols=119 Identities=18% Similarity=0.098 Sum_probs=77.3
Q ss_pred CCCCeeEEEEEECCeEEEEE--E-eCC---C-CCeEEEECCCCCChHHHHHHHHHHhhCCCEEEEEcCCCCCCCCCCCcC
Q 008512 402 NEGVYSTRIWRWNGYQIQYT--V-AGK---E-GPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNIV 474 (563)
Q Consensus 402 ~~~~~~~~~~~~~g~~l~y~--~-~g~---~-~~~vlllHG~~~~~~~~~~~~~~l~~~g~~Vi~~D~~G~G~S~~~~~~ 474 (563)
..++...+.-..||..|... . .++ + ...||++-|..|-.+. .++..=++.||.|+.+++||++.|.+.+..
T Consensus 211 ~~NG~R~kiks~dgneiDtmF~d~r~n~~~ngq~LvIC~EGNAGFYEv--G~m~tP~~lgYsvLGwNhPGFagSTG~P~p 288 (517)
T KOG1553|consen 211 NKNGQRLKIKSSDGNEIDTMFLDGRPNQSGNGQDLVICFEGNAGFYEV--GVMNTPAQLGYSVLGWNHPGFAGSTGLPYP 288 (517)
T ss_pred cCCCeEEEEeecCCcchhheeecCCCCCCCCCceEEEEecCCccceEe--eeecChHHhCceeeccCCCCccccCCCCCc
Confidence 35667777777777665432 1 111 1 2357777777664332 334444556999999999999999886533
Q ss_pred C-CHHHHHHHHHHHHHHhCC--CcEEEEEechhHHHHHHHHhc-cCcccEEEE
Q 008512 475 Y-TELMWSELLRDFTVEVVG--EPVHLIGNSIGGMFLSTNLTR-GKLYAFLLS 523 (563)
Q Consensus 475 ~-~~~~~~~~l~~~l~~l~~--~~i~lvGhS~Gg~ia~~~a~~-~~~~~~v~~ 523 (563)
. +....-..+.-.|+.++. +.|++.|+|.||..++.+|.. |++ +++++
T Consensus 289 ~n~~nA~DaVvQfAI~~Lgf~~edIilygWSIGGF~~~waAs~YPdV-kavvL 340 (517)
T KOG1553|consen 289 VNTLNAADAVVQFAIQVLGFRQEDIILYGWSIGGFPVAWAASNYPDV-KAVVL 340 (517)
T ss_pred ccchHHHHHHHHHHHHHcCCCccceEEEEeecCCchHHHHhhcCCCc-eEEEe
Confidence 3 333322233334666654 779999999999999999998 554 44444
No 144
>PRK05371 x-prolyl-dipeptidyl aminopeptidase; Provisional
Probab=97.43 E-value=0.00082 Score=77.34 Aligned_cols=84 Identities=13% Similarity=-0.037 Sum_probs=63.1
Q ss_pred HHHHHHhhCCCEEEEEcCCCCCCCCCCCcCCCHHHHHHHHHHHHHHhC--------------------CCcEEEEEechh
Q 008512 445 DNIYDIADGGNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFTVEVV--------------------GEPVHLIGNSIG 504 (563)
Q Consensus 445 ~~~~~l~~~g~~Vi~~D~~G~G~S~~~~~~~~~~~~~~~l~~~l~~l~--------------------~~~i~lvGhS~G 504 (563)
.+.+.|+.+||.|+..|.||.|.|++........+ .+|..++|+-+. .++|.++|.|+|
T Consensus 270 ~~~~~~~~rGYaVV~~D~RGtg~SeG~~~~~~~~E-~~D~~~vIeWl~~~~~~~~d~~~~~~~kq~WsnGkVGm~G~SY~ 348 (767)
T PRK05371 270 SLNDYFLPRGFAVVYVSGIGTRGSDGCPTTGDYQE-IESMKAVIDWLNGRATAYTDRTRGKEVKADWSNGKVAMTGKSYL 348 (767)
T ss_pred hHHHHHHhCCeEEEEEcCCCCCCCCCcCccCCHHH-HHHHHHHHHHHhhCCccccccccccccccCCCCCeeEEEEEcHH
Confidence 45678888999999999999999998754443332 445555554443 479999999999
Q ss_pred HHHHHHHHhc-cCcccEEEEEcCcCC
Q 008512 505 GMFLSTNLTR-GKLYAFLLSVNYLLS 529 (563)
Q Consensus 505 g~ia~~~a~~-~~~~~~v~~~~~~~~ 529 (563)
|.++..+|.. ++-.++|+...++..
T Consensus 349 G~~~~~aAa~~pp~LkAIVp~a~is~ 374 (767)
T PRK05371 349 GTLPNAVATTGVEGLETIIPEAAISS 374 (767)
T ss_pred HHHHHHHHhhCCCcceEEEeeCCCCc
Confidence 9999988775 777777777766654
No 145
>PTZ00472 serine carboxypeptidase (CBP1); Provisional
Probab=97.32 E-value=0.0013 Score=71.43 Aligned_cols=117 Identities=22% Similarity=0.168 Sum_probs=77.8
Q ss_pred CeEEEEEEeCC-----CCCeEEEECCCCCChHHHHHHHH-----------HHhh------CCCEEEEEcCC-CCCCCCCC
Q 008512 415 GYQIQYTVAGK-----EGPAILLVHGFGAFLEHYRDNIY-----------DIAD------GGNRVWAITLL-GFGRSEKP 471 (563)
Q Consensus 415 g~~l~y~~~g~-----~~~~vlllHG~~~~~~~~~~~~~-----------~l~~------~g~~Vi~~D~~-G~G~S~~~ 471 (563)
+..++|..... ..|.||+++|.+|.+..+.-+.+ .+.. ...+++.+|.| |+|.|...
T Consensus 60 ~~~lFyw~~~s~~~~~~~Pl~lwlnGGPG~ss~~G~f~E~GP~~i~~~~~~~~~n~~sW~~~~~~l~iDqP~G~G~S~~~ 139 (462)
T PTZ00472 60 DKHYFYWAFGPRNGNPEAPVLLWMTGGPGCSSMFALLAENGPCLMNETTGDIYNNTYSWNNEAYVIYVDQPAGVGFSYAD 139 (462)
T ss_pred CceEEEEEEEcCCCCCCCCEEEEECCCCcHHHHHhhhccCCCeEEeCCCCceeECCcccccccCeEEEeCCCCcCcccCC
Confidence 35666654432 26899999999998876532221 1110 12678999965 88888654
Q ss_pred C--cCCCHHHHHHHHHHHHHHh-------CCCcEEEEEechhHHHHHHHHhc----cC-------cccEEEEEcCcCChH
Q 008512 472 N--IVYTELMWSELLRDFTVEV-------VGEPVHLIGNSIGGMFLSTNLTR----GK-------LYAFLLSVNYLLSRS 531 (563)
Q Consensus 472 ~--~~~~~~~~~~~l~~~l~~l-------~~~~i~lvGhS~Gg~ia~~~a~~----~~-------~~~~v~~~~~~~~~~ 531 (563)
. ...+.++.++|+.+++..+ ...+++|+||||||.++..+|.. .+ -.+.+++.++.....
T Consensus 140 ~~~~~~~~~~~a~d~~~~l~~f~~~~p~~~~~~~~i~GeSygG~y~p~~a~~i~~~n~~~~~~~inLkGi~IGNg~~dp~ 219 (462)
T PTZ00472 140 KADYDHNESEVSEDMYNFLQAFFGSHEDLRANDLFVVGESYGGHYAPATAYRINMGNKKGDGLYINLAGLAVGNGLTDPY 219 (462)
T ss_pred CCCCCCChHHHHHHHHHHHHHHHHhCccccCCCEEEEeecchhhhHHHHHHHHHhhccccCCceeeeEEEEEeccccChh
Confidence 3 2345677888888887743 34889999999999999777653 11 146777777765543
No 146
>COG4814 Uncharacterized protein with an alpha/beta hydrolase fold [General function prediction only]
Probab=97.32 E-value=0.0013 Score=63.87 Aligned_cols=100 Identities=14% Similarity=0.154 Sum_probs=67.4
Q ss_pred eEEEECCCCCChHHHHHHHHHHhhCC-----CEEEEEcCCCCCCCCC--------C-------CcCCCHHHHHHHHHHHH
Q 008512 429 AILLVHGFGAFLEHYRDNIYDIADGG-----NRVWAITLLGFGRSEK--------P-------NIVYTELMWSELLRDFT 488 (563)
Q Consensus 429 ~vlllHG~~~~~~~~~~~~~~l~~~g-----~~Vi~~D~~G~G~S~~--------~-------~~~~~~~~~~~~l~~~l 488 (563)
|.|||||++|+......++..|.+.+ --+...|--|-=...+ | ....+..++...+..++
T Consensus 47 PTIfIhGsgG~asS~~~Mv~ql~~~~~~~~e~Lt~~V~~dgslk~tGk~~Kd~~nP~I~~gfe~n~~s~~~~s~wlk~~m 126 (288)
T COG4814 47 PTIFIHGSGGTASSLNGMVNQLLPDYKAGTESLTMTVDVDGSLKVTGKISKDAKNPIIEFGFEDNTASGLDQSKWLKKAM 126 (288)
T ss_pred ceEEEecCCCChhHHHHHHHHhhhcccccccceEEEEcCCCcEEEeeeecccCCCCeEEEEEecCcCchhhHHHHHHHHH
Confidence 78999999999999999999998753 1244455555211111 1 01234455566666665
Q ss_pred HHh----CCCcEEEEEechhHHHHHHHHhc-------cCcccEEEEEcCcC
Q 008512 489 VEV----VGEPVHLIGNSIGGMFLSTNLTR-------GKLYAFLLSVNYLL 528 (563)
Q Consensus 489 ~~l----~~~~i~lvGhS~Gg~ia~~~a~~-------~~~~~~v~~~~~~~ 528 (563)
..| .+.++.++||||||.-...|+.. |.+.+.+.+..++.
T Consensus 127 syL~~~Y~i~k~n~VGhSmGg~~~~~Y~~~yg~dks~P~lnK~V~l~gpfN 177 (288)
T COG4814 127 SYLQKHYNIPKFNAVGHSMGGLGLTYYMIDYGDDKSLPPLNKLVSLAGPFN 177 (288)
T ss_pred HHHHHhcCCceeeeeeeccccHHHHHHHHHhcCCCCCcchhheEEeccccc
Confidence 544 67999999999999999888753 55666666655544
No 147
>COG4782 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.27 E-value=0.0024 Score=65.34 Aligned_cols=114 Identities=15% Similarity=0.186 Sum_probs=74.2
Q ss_pred CCCeEEEECCCCCChHH-HHHHHHHHhhCC--CEEEEEcCCCCCCCCC-----CCcCCCHHHHHHHHHHHHHHhCCCcEE
Q 008512 426 EGPAILLVHGFGAFLEH-YRDNIYDIADGG--NRVWAITLLGFGRSEK-----PNIVYTELMWSELLRDFTVEVVGEPVH 497 (563)
Q Consensus 426 ~~~~vlllHG~~~~~~~-~~~~~~~l~~~g--~~Vi~~D~~G~G~S~~-----~~~~~~~~~~~~~l~~~l~~l~~~~i~ 497 (563)
.+..+||+||+.-+.++ -...+......| ...+.|.+|.-|.--+ +...++-..+...+..+.+....++|+
T Consensus 115 ~k~vlvFvHGfNntf~dav~R~aqI~~d~g~~~~pVvFSWPS~g~l~~Yn~DreS~~~Sr~aLe~~lr~La~~~~~~~I~ 194 (377)
T COG4782 115 AKTVLVFVHGFNNTFEDAVYRTAQIVHDSGNDGVPVVFSWPSRGSLLGYNYDRESTNYSRPALERLLRYLATDKPVKRIY 194 (377)
T ss_pred CCeEEEEEcccCCchhHHHHHHHHHHhhcCCCcceEEEEcCCCCeeeecccchhhhhhhHHHHHHHHHHHHhCCCCceEE
Confidence 46789999999877543 234444443333 5678889997765422 223455556666666666666678999
Q ss_pred EEEechhHHHHHHHHhc---------cCcccEEEEEcCcCChHHHHHHhhh
Q 008512 498 LIGNSIGGMFLSTNLTR---------GKLYAFLLSVNYLLSRSIICRLFCC 539 (563)
Q Consensus 498 lvGhS~Gg~ia~~~a~~---------~~~~~~v~~~~~~~~~~~~~~~~~~ 539 (563)
|++||||..+++..+.+ +..++-+++..+-.+.+-+...+..
T Consensus 195 ilAHSMGtwl~~e~LrQLai~~~~~l~~ki~nViLAaPDiD~DVF~~Q~~~ 245 (377)
T COG4782 195 LLAHSMGTWLLMEALRQLAIRADRPLPAKIKNVILAAPDIDVDVFSSQIAA 245 (377)
T ss_pred EEEecchHHHHHHHHHHHhccCCcchhhhhhheEeeCCCCChhhHHHHHHH
Confidence 99999999999988653 1234556676665555555544444
No 148
>KOG3847 consensus Phospholipase A2 (platelet-activating factor acetylhydrolase in humans) [Lipid transport and metabolism]
Probab=97.24 E-value=0.00046 Score=68.79 Aligned_cols=41 Identities=22% Similarity=0.256 Sum_probs=37.4
Q ss_pred CCeEEEECCCCCChHHHHHHHHHHhhCCCEEEEEcCCCCCC
Q 008512 427 GPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGR 467 (563)
Q Consensus 427 ~~~vlllHG~~~~~~~~~~~~~~l~~~g~~Vi~~D~~G~G~ 467 (563)
=|.|||-||++++...|..+.-.|++.||-|.++.+|.+-.
T Consensus 118 ~PvvvFSHGLggsRt~YSa~c~~LAShG~VVaavEHRD~SA 158 (399)
T KOG3847|consen 118 YPVVVFSHGLGGSRTLYSAYCTSLASHGFVVAAVEHRDRSA 158 (399)
T ss_pred ccEEEEecccccchhhHHHHhhhHhhCceEEEEeecccCcc
Confidence 47899999999999999999999999999999999987643
No 149
>COG3545 Predicted esterase of the alpha/beta hydrolase fold [General function prediction only]
Probab=97.23 E-value=0.0025 Score=58.84 Aligned_cols=91 Identities=16% Similarity=0.148 Sum_probs=60.4
Q ss_pred CeEEEECCCCCC-hHHHHHHHHHHhhCCCEEEEEcCCCCCCCCCCCcCCCHHHHHHHHHHHHHHhCCCcEEEEEechhHH
Q 008512 428 PAILLVHGFGAF-LEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFTVEVVGEPVHLIGNSIGGM 506 (563)
Q Consensus 428 ~~vlllHG~~~~-~~~~~~~~~~l~~~g~~Vi~~D~~G~G~S~~~~~~~~~~~~~~~l~~~l~~l~~~~i~lvGhS~Gg~ 506 (563)
+.+|++||+.++ ..+|....+.-.. .+-.+++. .......++|++.+...+... .++++||+||+|+.
T Consensus 3 ~~~lIVpG~~~Sg~~HWq~~we~~l~---~a~rveq~-------~w~~P~~~dWi~~l~~~v~a~-~~~~vlVAHSLGc~ 71 (181)
T COG3545 3 TDVLIVPGYGGSGPNHWQSRWESALP---NARRVEQD-------DWEAPVLDDWIARLEKEVNAA-EGPVVLVAHSLGCA 71 (181)
T ss_pred ceEEEecCCCCCChhHHHHHHHhhCc---cchhcccC-------CCCCCCHHHHHHHHHHHHhcc-CCCeEEEEecccHH
Confidence 468999999876 4567654443222 12222222 123457888988888888776 57799999999999
Q ss_pred HHHHHHhc--cCcccEEEEEcCcCC
Q 008512 507 FLSTNLTR--GKLYAFLLSVNYLLS 529 (563)
Q Consensus 507 ia~~~a~~--~~~~~~v~~~~~~~~ 529 (563)
+++.++.+ .++.+++++.++...
T Consensus 72 ~v~h~~~~~~~~V~GalLVAppd~~ 96 (181)
T COG3545 72 TVAHWAEHIQRQVAGALLVAPPDVS 96 (181)
T ss_pred HHHHHHHhhhhccceEEEecCCCcc
Confidence 99999987 444445555554433
No 150
>KOG2281 consensus Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Posttranslational modification, protein turnover, chaperones]
Probab=97.17 E-value=0.0018 Score=70.23 Aligned_cols=118 Identities=14% Similarity=0.037 Sum_probs=85.0
Q ss_pred CCeEEEECCCCCCh---HHHHH----HHHHHhhCCCEEEEEcCCCCCCCCCC--------CcCCCHHHHHHHHHHHHHHh
Q 008512 427 GPAILLVHGFGAFL---EHYRD----NIYDIADGGNRVWAITLLGFGRSEKP--------NIVYTELMWSELLRDFTVEV 491 (563)
Q Consensus 427 ~~~vlllHG~~~~~---~~~~~----~~~~l~~~g~~Vi~~D~~G~G~S~~~--------~~~~~~~~~~~~l~~~l~~l 491 (563)
=|+|+++-|.++-. ..|.. -...|++.||.|+.+|-||-..-... -.....+|.++-+.-+.++.
T Consensus 642 Yptvl~VYGGP~VQlVnnsfkgi~ylR~~~LaslGy~Vv~IDnRGS~hRGlkFE~~ik~kmGqVE~eDQVeglq~Laeq~ 721 (867)
T KOG2281|consen 642 YPTVLNVYGGPGVQLVNNSFKGIQYLRFCRLASLGYVVVFIDNRGSAHRGLKFESHIKKKMGQVEVEDQVEGLQMLAEQT 721 (867)
T ss_pred CceEEEEcCCCceEEeeccccceehhhhhhhhhcceEEEEEcCCCccccchhhHHHHhhccCeeeehhhHHHHHHHHHhc
Confidence 46899999988732 22221 14567888999999999986433211 12346788888888888877
Q ss_pred C---CCcEEEEEechhHHHHHHHHhc-cCcccEEEEEcCcCChHHHHHHhhhcCCCC
Q 008512 492 V---GEPVHLIGNSIGGMFLSTNLTR-GKLYAFLLSVNYLLSRSIICRLFCCHCCLS 544 (563)
Q Consensus 492 ~---~~~i~lvGhS~Gg~ia~~~a~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 544 (563)
+ .++|.+-|+|+||++++....+ |++.+..+...++..+......+.-..|.-
T Consensus 722 gfidmdrV~vhGWSYGGYLSlm~L~~~P~IfrvAIAGapVT~W~~YDTgYTERYMg~ 778 (867)
T KOG2281|consen 722 GFIDMDRVGVHGWSYGGYLSLMGLAQYPNIFRVAIAGAPVTDWRLYDTGYTERYMGY 778 (867)
T ss_pred CcccchheeEeccccccHHHHHHhhcCcceeeEEeccCcceeeeeecccchhhhcCC
Confidence 5 3789999999999999888776 999988888888777655555444444443
No 151
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=97.09 E-value=0.0015 Score=61.41 Aligned_cols=82 Identities=21% Similarity=0.136 Sum_probs=62.6
Q ss_pred CeEEEECCCCCChHHHHHHHHHHhhCCCEEEEEcCCCCCCCCCCCcCCCHHHHHHHHHHHHHHh----CCCcEEEEEech
Q 008512 428 PAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFTVEV----VGEPVHLIGNSI 503 (563)
Q Consensus 428 ~~vlllHG~~~~~~~~~~~~~~l~~~g~~Vi~~D~~G~G~S~~~~~~~~~~~~~~~l~~~l~~l----~~~~i~lvGhS~ 503 (563)
..+||+.|=+|-...=..+++.|+++|+.|+.+|-+-+=.+ ..+.++.+.|+..+++.+ +..+++|+|+|+
T Consensus 3 t~~v~~SGDgGw~~~d~~~a~~l~~~G~~VvGvdsl~Yfw~-----~rtP~~~a~Dl~~~i~~y~~~w~~~~vvLiGYSF 77 (192)
T PF06057_consen 3 TLAVFFSGDGGWRDLDKQIAEALAKQGVPVVGVDSLRYFWS-----ERTPEQTAADLARIIRHYRARWGRKRVVLIGYSF 77 (192)
T ss_pred EEEEEEeCCCCchhhhHHHHHHHHHCCCeEEEechHHHHhh-----hCCHHHHHHHHHHHHHHHHHHhCCceEEEEeecC
Confidence 35789999888776556889999999999999996644333 345567777777777654 568999999999
Q ss_pred hHHHHHHHHhc
Q 008512 504 GGMFLSTNLTR 514 (563)
Q Consensus 504 Gg~ia~~~a~~ 514 (563)
|+-+.-....+
T Consensus 78 GADvlP~~~nr 88 (192)
T PF06057_consen 78 GADVLPFIYNR 88 (192)
T ss_pred CchhHHHHHhh
Confidence 99777665543
No 152
>KOG3724 consensus Negative regulator of COPII vesicle formation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.05 E-value=0.0023 Score=70.91 Aligned_cols=85 Identities=19% Similarity=0.144 Sum_probs=54.7
Q ss_pred CCeEEEECCCCCChHHHHHHHHHHhh----------------CCCEEEEEcCCCCCCCCCCCcCCCHHHHHHHHHHHHHH
Q 008512 427 GPAILLVHGFGAFLEHYRDNIYDIAD----------------GGNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFTVE 490 (563)
Q Consensus 427 ~~~vlllHG~~~~~~~~~~~~~~l~~----------------~g~~Vi~~D~~G~G~S~~~~~~~~~~~~~~~l~~~l~~ 490 (563)
+-||+||+|..|+...-+.++..... ..|+-++.|+=+-= ..-.+.++.+.++.+.+.+..
T Consensus 89 GIPVLFIPGNAGSyKQvRSiAS~a~n~y~~~~~e~t~~~d~~~~~DFFaVDFnEe~---tAm~G~~l~dQtEYV~dAIk~ 165 (973)
T KOG3724|consen 89 GIPVLFIPGNAGSYKQVRSIASVAQNAYQGGPFEKTEDRDNPFSFDFFAVDFNEEF---TAMHGHILLDQTEYVNDAIKY 165 (973)
T ss_pred CceEEEecCCCCchHHHHHHHHHHhhhhcCCchhhhhcccCccccceEEEcccchh---hhhccHhHHHHHHHHHHHHHH
Confidence 56899999999988777766655442 13455555553100 001234667777777766543
Q ss_pred h-----C--------CCcEEEEEechhHHHHHHHHhc
Q 008512 491 V-----V--------GEPVHLIGNSIGGMFLSTNLTR 514 (563)
Q Consensus 491 l-----~--------~~~i~lvGhS~Gg~ia~~~a~~ 514 (563)
+ + ...|+++||||||.+|...+-.
T Consensus 166 ILslYr~~~e~~~p~P~sVILVGHSMGGiVAra~~tl 202 (973)
T KOG3724|consen 166 ILSLYRGEREYASPLPHSVILVGHSMGGIVARATLTL 202 (973)
T ss_pred HHHHhhcccccCCCCCceEEEEeccchhHHHHHHHhh
Confidence 3 1 1349999999999999887654
No 153
>PF12048 DUF3530: Protein of unknown function (DUF3530); InterPro: IPR022529 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 272 to 336 amino acids in length. These proteins are distantly related to alpa/beta hydrolases so they may act as enzymes.
Probab=96.93 E-value=0.037 Score=57.03 Aligned_cols=126 Identities=14% Similarity=0.097 Sum_probs=77.1
Q ss_pred EEEEEECCeEEE--EEEeCCC--CCeEEEECCCCCCh---HHHHHHHHHHhhCCCEEEEEcCCC--CCCCCC--------
Q 008512 408 TRIWRWNGYQIQ--YTVAGKE--GPAILLVHGFGAFL---EHYRDNIYDIADGGNRVWAITLLG--FGRSEK-------- 470 (563)
Q Consensus 408 ~~~~~~~g~~l~--y~~~g~~--~~~vlllHG~~~~~---~~~~~~~~~l~~~g~~Vi~~D~~G--~G~S~~-------- 470 (563)
+..+..++.++- |..+... ...||++||.+.+. .....+-..|...|++.+++.+|. ......
T Consensus 64 ~~~L~~~~~~flaL~~~~~~~~~~G~vIilp~~g~~~d~p~~i~~LR~~L~~~GW~Tlsit~P~~~~~~~p~~~~~~~~~ 143 (310)
T PF12048_consen 64 VQWLQAGEERFLALWRPANSAKPQGAVIILPDWGEHPDWPGLIAPLRRELPDHGWATLSITLPDPAPPASPNRATEAEEV 143 (310)
T ss_pred cEEeecCCEEEEEEEecccCCCCceEEEEecCCCCCCCcHhHHHHHHHHhhhcCceEEEecCCCcccccCCccCCCCCCC
Confidence 344444555443 2333222 45899999999875 344567788999999999998887 110000
Q ss_pred --------CCc--C-------------CCHHHHHHHHHHHH---HHhCCCcEEEEEechhHHHHHHHHhc--cCcccEEE
Q 008512 471 --------PNI--V-------------YTELMWSELLRDFT---VEVVGEPVHLIGNSIGGMFLSTNLTR--GKLYAFLL 522 (563)
Q Consensus 471 --------~~~--~-------------~~~~~~~~~l~~~l---~~l~~~~i~lvGhS~Gg~ia~~~a~~--~~~~~~v~ 522 (563)
... . ...+.+..-+.+.+ .+.+..+++|+||+.|+..++.+... ...+.++|
T Consensus 144 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ari~Aa~~~~~~~~~~~ivlIg~G~gA~~~~~~la~~~~~~~daLV 223 (310)
T PF12048_consen 144 PSAGDQQLSQPSDEPSPASAQEAEAREAYEERLFARIEAAIAFAQQQGGKNIVLIGHGTGAGWAARYLAEKPPPMPDALV 223 (310)
T ss_pred CCCCCCCcCCCCCCCccccccHhHHhHHHHHHHHHHHHHHHHHHHhcCCceEEEEEeChhHHHHHHHHhcCCCcccCeEE
Confidence 000 0 00122333333333 34455669999999999999999886 33466777
Q ss_pred EEcCcCChHHH
Q 008512 523 SVNYLLSRSII 533 (563)
Q Consensus 523 ~~~~~~~~~~~ 533 (563)
++++..+....
T Consensus 224 ~I~a~~p~~~~ 234 (310)
T PF12048_consen 224 LINAYWPQPDR 234 (310)
T ss_pred EEeCCCCcchh
Confidence 77776665444
No 154
>COG3150 Predicted esterase [General function prediction only]
Probab=96.92 E-value=0.0047 Score=56.44 Aligned_cols=95 Identities=17% Similarity=0.163 Sum_probs=64.1
Q ss_pred EEEECCCCCChHHHHHH--HHHHhhCCCEEEEEcCCCCCCCCCCCcCCCHHHHHHHHHHHHHHhCCCcEEEEEechhHHH
Q 008512 430 ILLVHGFGAFLEHYRDN--IYDIADGGNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFTVEVVGEPVHLIGNSIGGMF 507 (563)
Q Consensus 430 vlllHG~~~~~~~~~~~--~~~l~~~g~~Vi~~D~~G~G~S~~~~~~~~~~~~~~~l~~~l~~l~~~~i~lvGhS~Gg~i 507 (563)
||++|||.++..+.... ...+... .. -.+.+. +....+....++.+..++.+.+.....|+|.|+||+.
T Consensus 2 ilYlHGFnSSP~shka~l~~q~~~~~-~~-------~i~y~~-p~l~h~p~~a~~ele~~i~~~~~~~p~ivGssLGGY~ 72 (191)
T COG3150 2 ILYLHGFNSSPGSHKAVLLLQFIDED-VR-------DIEYST-PHLPHDPQQALKELEKAVQELGDESPLIVGSSLGGYY 72 (191)
T ss_pred eEEEecCCCCcccHHHHHHHHHHhcc-cc-------ceeeec-CCCCCCHHHHHHHHHHHHHHcCCCCceEEeecchHHH
Confidence 89999999888777643 2334332 22 222222 1223567788899999999999888999999999999
Q ss_pred HHHHHhccCcccEEEEEcCcCChHHHH
Q 008512 508 LSTNLTRGKLYAFLLSVNYLLSRSIIC 534 (563)
Q Consensus 508 a~~~a~~~~~~~~v~~~~~~~~~~~~~ 534 (563)
+.+++....+. .+++-|.+.+...+.
T Consensus 73 At~l~~~~Gir-av~~NPav~P~e~l~ 98 (191)
T COG3150 73 ATWLGFLCGIR-AVVFNPAVRPYELLT 98 (191)
T ss_pred HHHHHHHhCCh-hhhcCCCcCchhhhh
Confidence 99998875543 444445455444443
No 155
>PF09752 DUF2048: Uncharacterized conserved protein (DUF2048); InterPro: IPR019149 This family of proteins has no known function.
Probab=96.92 E-value=0.0057 Score=62.85 Aligned_cols=101 Identities=14% Similarity=0.087 Sum_probs=68.5
Q ss_pred CCCeEEEECCCCCChHHHH-HH-HHHHhhCCCEEEEEcCCCCCCCCCCCcC----CCHHHHH-------HH---HHHHHH
Q 008512 426 EGPAILLVHGFGAFLEHYR-DN-IYDIADGGNRVWAITLLGFGRSEKPNIV----YTELMWS-------EL---LRDFTV 489 (563)
Q Consensus 426 ~~~~vlllHG~~~~~~~~~-~~-~~~l~~~g~~Vi~~D~~G~G~S~~~~~~----~~~~~~~-------~~---l~~~l~ 489 (563)
.+|.+|.++|.|++....+ .+ +..|.+.|+..+.+..|-||.-.+.... .+..|+. .. +...++
T Consensus 91 ~rp~~IhLagTGDh~f~rR~~l~a~pLl~~gi~s~~le~Pyyg~RkP~~Q~~s~l~~VsDl~~~g~~~i~E~~~Ll~Wl~ 170 (348)
T PF09752_consen 91 YRPVCIHLAGTGDHGFWRRRRLMARPLLKEGIASLILENPYYGQRKPKDQRRSSLRNVSDLFVMGRATILESRALLHWLE 170 (348)
T ss_pred CCceEEEecCCCccchhhhhhhhhhHHHHcCcceEEEecccccccChhHhhcccccchhHHHHHHhHHHHHHHHHHHHHH
Confidence 4788999999999766555 33 7788888999999999999976443211 1122221 11 112223
Q ss_pred HhCCCcEEEEEechhHHHHHHHHhc-cCcccEEEEEcC
Q 008512 490 EVVGEPVHLIGNSIGGMFLSTNLTR-GKLYAFLLSVNY 526 (563)
Q Consensus 490 ~l~~~~i~lvGhS~Gg~ia~~~a~~-~~~~~~v~~~~~ 526 (563)
.-+..++.|.|.||||.+|...+.. |..+..+-++++
T Consensus 171 ~~G~~~~g~~G~SmGG~~A~laa~~~p~pv~~vp~ls~ 208 (348)
T PF09752_consen 171 REGYGPLGLTGISMGGHMAALAASNWPRPVALVPCLSW 208 (348)
T ss_pred hcCCCceEEEEechhHhhHHhhhhcCCCceeEEEeecc
Confidence 3377899999999999999888876 666655544444
No 156
>PF00756 Esterase: Putative esterase; InterPro: IPR000801 This family contains several seemingly unrelated proteins, including human esterase D; mycobacterial antigen 85, which is responsible for the high affinity of mycobacteria to fibronectin; Corynebacterium glutamicum major secreted protein PS1; and hypothetical proteins from Escherichia coli, yeast, mycobacteria and Haemophilus influenzae.; PDB: 3LS2_A 1VA5_B 1DQZ_B 3HRH_A 1DQY_A 2GZR_A 2GZS_A 3GFF_A 1R88_A 3E4D_D ....
Probab=96.86 E-value=0.0027 Score=62.90 Aligned_cols=101 Identities=14% Similarity=0.130 Sum_probs=58.8
Q ss_pred CCeEEEECCCCCChHHH--HHHHHHHhhCC----CEEEEEcCCCCCCCC-----------CCCcCCCH----HHHHHHHH
Q 008512 427 GPAILLVHGFGAFLEHY--RDNIYDIADGG----NRVWAITLLGFGRSE-----------KPNIVYTE----LMWSELLR 485 (563)
Q Consensus 427 ~~~vlllHG~~~~~~~~--~~~~~~l~~~g----~~Vi~~D~~G~G~S~-----------~~~~~~~~----~~~~~~l~ 485 (563)
-|+|+++||..+....+ ...++.+...| .-+++++..+.+... ........ ..+.++|.
T Consensus 24 ~PvlylldG~~~~~~~~~~~~~~~~~~~~~~~~~~iiV~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~ 103 (251)
T PF00756_consen 24 YPVLYLLDGQSGWFRNGNAQEALDRLIAEGKIPPMIIVVIPNGDNSRFYTSWYLPAGSSRRADDSGGGDAYETFLTEELI 103 (251)
T ss_dssp EEEEEEESHTTHHHHHHHHHHHHHHHHHHHTSEEEEEEEEESSSTSSTTSBTTSSBCTTCBCTSTTTHHHHHHHHHTHHH
T ss_pred CEEEEEccCCccccccchHHHHHHHHHHhCCCCceEEEEEecccccccccccccccccccccccCCCCcccceehhccch
Confidence 36899999983222222 13344344432 345666665554110 00111111 23445555
Q ss_pred HHHHHh-CC--CcEEEEEechhHHHHHHHHhc-cCcccEEEEEcCc
Q 008512 486 DFTVEV-VG--EPVHLIGNSIGGMFLSTNLTR-GKLYAFLLSVNYL 527 (563)
Q Consensus 486 ~~l~~l-~~--~~i~lvGhS~Gg~ia~~~a~~-~~~~~~v~~~~~~ 527 (563)
..|++. .. .+..|+|+||||..|+.++.+ |+..+.++..++.
T Consensus 104 p~i~~~~~~~~~~~~i~G~S~GG~~Al~~~l~~Pd~F~~~~~~S~~ 149 (251)
T PF00756_consen 104 PYIEANYRTDPDRRAIAGHSMGGYGALYLALRHPDLFGAVIAFSGA 149 (251)
T ss_dssp HHHHHHSSEEECCEEEEEETHHHHHHHHHHHHSTTTESEEEEESEE
T ss_pred hHHHHhcccccceeEEeccCCCcHHHHHHHHhCccccccccccCcc
Confidence 555543 22 338999999999999999886 9999999888865
No 157
>COG4099 Predicted peptidase [General function prediction only]
Probab=96.81 E-value=0.0078 Score=59.88 Aligned_cols=115 Identities=17% Similarity=0.113 Sum_probs=66.5
Q ss_pred CCeEEEEEEeCCC-------C-CeEEEECCCCCChHHHHHH-HHH-------HhhCCCEEEEEcC-CCCCCCCCCCcCCC
Q 008512 414 NGYQIQYTVAGKE-------G-PAILLVHGFGAFLEHYRDN-IYD-------IADGGNRVWAITL-LGFGRSEKPNIVYT 476 (563)
Q Consensus 414 ~g~~l~y~~~g~~-------~-~~vlllHG~~~~~~~~~~~-~~~-------l~~~g~~Vi~~D~-~G~G~S~~~~~~~~ 476 (563)
-|.++.|.-.-++ - |.|||+||.+....+-... ... .-+.++-|+++.+ +-+..++... ..-
T Consensus 170 tgneLkYrly~Pkdy~pdkky~PLvlfLHgagq~g~dn~~~l~sg~gaiawa~pedqcfVlAPQy~~if~d~e~~t-~~~ 248 (387)
T COG4099 170 TGNELKYRLYTPKDYAPDKKYYPLVLFLHGAGQGGSDNDKVLSSGIGAIAWAGPEDQCFVLAPQYNPIFADSEEKT-LLY 248 (387)
T ss_pred cCceeeEEEecccccCCCCccccEEEEEecCCCCCchhhhhhhcCccceeeecccCceEEEccccccccccccccc-chh
Confidence 4667777665542 1 6899999998765543321 111 1122345555542 1222222211 111
Q ss_pred HHHHHHHHHHHH-HHhCC--CcEEEEEechhHHHHHHHHhc-cCcccEEEEEcCcCC
Q 008512 477 ELMWSELLRDFT-VEVVG--EPVHLIGNSIGGMFLSTNLTR-GKLYAFLLSVNYLLS 529 (563)
Q Consensus 477 ~~~~~~~l~~~l-~~l~~--~~i~lvGhS~Gg~ia~~~a~~-~~~~~~v~~~~~~~~ 529 (563)
+....+.+.+.+ ++..+ .+|+++|.|+||+.+..++.. |+..++.+.+.+--.
T Consensus 249 l~~~idli~~vlas~ynID~sRIYviGlSrG~~gt~al~~kfPdfFAaa~~iaG~~d 305 (387)
T COG4099 249 LIEKIDLILEVLASTYNIDRSRIYVIGLSRGGFGTWALAEKFPDFFAAAVPIAGGGD 305 (387)
T ss_pred HHHHHHHHHHHHhhccCcccceEEEEeecCcchhhHHHHHhCchhhheeeeecCCCc
Confidence 223333444232 33343 679999999999999988877 998888888776554
No 158
>PF05577 Peptidase_S28: Serine carboxypeptidase S28; InterPro: IPR008758 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S28 (clan SC). The predicted active site residues for members of this family and family S10 occur in the same order in the sequence: S, D, H. These serine proteases include several eukaryotic enzymes such as lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, and thymus-specific serine peptidase [, , , ].; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3N2Z_B 3JYH_A 3N0T_C.
Probab=96.62 E-value=0.016 Score=62.75 Aligned_cols=102 Identities=21% Similarity=0.208 Sum_probs=63.4
Q ss_pred CCeEEEECCCCCChHHH---HHHHHHHhh-CCCEEEEEcCCCCCCCCCCC-------cCCCHHHHHHHHHHHHHHhC---
Q 008512 427 GPAILLVHGFGAFLEHY---RDNIYDIAD-GGNRVWAITLLGFGRSEKPN-------IVYTELMWSELLRDFTVEVV--- 492 (563)
Q Consensus 427 ~~~vlllHG~~~~~~~~---~~~~~~l~~-~g~~Vi~~D~~G~G~S~~~~-------~~~~~~~~~~~l~~~l~~l~--- 492 (563)
+|.+|++ |.-+..+.+ ..++..|++ .|--|+++.+|-+|.|.+-. ...+.++..+|+..++..+.
T Consensus 29 gpifl~~-ggE~~~~~~~~~~~~~~~lA~~~~a~~v~lEHRyYG~S~P~~~~s~~nL~yLt~~QALaD~a~F~~~~~~~~ 107 (434)
T PF05577_consen 29 GPIFLYI-GGEGPIEPFWINNGFMWELAKEFGALVVALEHRYYGKSQPFGDLSTENLRYLTSEQALADLAYFIRYVKKKY 107 (434)
T ss_dssp SEEEEEE---SS-HHHHHHH-HHHHHHHHHHTEEEEEE--TTSTTB-TTGGGGGSTTTC-SHHHHHHHHHHHHHHHHHHT
T ss_pred CCEEEEE-CCCCccchhhhcCChHHHHHHHcCCcEEEeehhhhcCCCCccccchhhHHhcCHHHHHHHHHHHHHHHHHhh
Confidence 5555555 555544322 234455554 37789999999999997521 23577888888888876553
Q ss_pred ----CCcEEEEEechhHHHHHHHHhc-cCcccEEEEEcCcCC
Q 008512 493 ----GEPVHLIGNSIGGMFLSTNLTR-GKLYAFLLSVNYLLS 529 (563)
Q Consensus 493 ----~~~i~lvGhS~Gg~ia~~~a~~-~~~~~~v~~~~~~~~ 529 (563)
..|++++|-|+||+++..+-.. |+++.+.+.+++...
T Consensus 108 ~~~~~~pwI~~GgSY~G~Laaw~r~kyP~~~~ga~ASSapv~ 149 (434)
T PF05577_consen 108 NTAPNSPWIVFGGSYGGALAAWFRLKYPHLFDGAWASSAPVQ 149 (434)
T ss_dssp TTGCC--EEEEEETHHHHHHHHHHHH-TTT-SEEEEET--CC
T ss_pred cCCCCCCEEEECCcchhHHHHHHHhhCCCeeEEEEeccceee
Confidence 2589999999999999998776 988877777666443
No 159
>KOG1515 consensus Arylacetamide deacetylase [Defense mechanisms]
Probab=96.61 E-value=0.016 Score=60.04 Aligned_cols=85 Identities=18% Similarity=0.064 Sum_probs=59.9
Q ss_pred CCeEEEECCCC---C--ChHHHHHHHHHHh-hCCCEEEEEcCCCCCCCCCCCcCCCHHHHHHHHHHHHHH----h--CCC
Q 008512 427 GPAILLVHGFG---A--FLEHYRDNIYDIA-DGGNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFTVE----V--VGE 494 (563)
Q Consensus 427 ~~~vlllHG~~---~--~~~~~~~~~~~l~-~~g~~Vi~~D~~G~G~S~~~~~~~~~~~~~~~l~~~l~~----l--~~~ 494 (563)
.|.||++||.| + ....|..+...++ +.+.-|+++|||=--+. +....++|-.+.+..+.++ . ..+
T Consensus 90 ~p~lvyfHGGGf~~~S~~~~~y~~~~~~~a~~~~~vvvSVdYRLAPEh---~~Pa~y~D~~~Al~w~~~~~~~~~~~D~~ 166 (336)
T KOG1515|consen 90 LPVLVYFHGGGFCLGSANSPAYDSFCTRLAAELNCVVVSVDYRLAPEH---PFPAAYDDGWAALKWVLKNSWLKLGADPS 166 (336)
T ss_pred ceEEEEEeCCccEeCCCCCchhHHHHHHHHHHcCeEEEecCcccCCCC---CCCccchHHHHHHHHHHHhHHHHhCCCcc
Confidence 57899999976 2 3667888888874 45888999999943322 2233455555555555543 2 347
Q ss_pred cEEEEEechhHHHHHHHHhc
Q 008512 495 PVHLIGNSIGGMFLSTNLTR 514 (563)
Q Consensus 495 ~i~lvGhS~Gg~ia~~~a~~ 514 (563)
+++|+|-|-||.+|..++.+
T Consensus 167 rv~l~GDSaGGNia~~va~r 186 (336)
T KOG1515|consen 167 RVFLAGDSAGGNIAHVVAQR 186 (336)
T ss_pred cEEEEccCccHHHHHHHHHH
Confidence 89999999999999888754
No 160
>PF06441 EHN: Epoxide hydrolase N terminus; InterPro: IPR010497 This entry represents the N-terminal region of the eukaryotic epoxide hydrolase protein. Epoxide hydrolases (3.3.2.3 from EC) comprise a group of functionally related enzymes that catalyse the addition of water to oxirane compounds (epoxides), thereby usually generating vicinal trans-diols. EHs have been found in all types of living organisms, including mammals, invertebrates, plants, fungi and bacteria. In animals, the major interest in EH is directed towards their detoxification capacity for epoxides since they are important safeguards against the cytotoxic and genotoxic potential of oxirane derivatives that are often reactive electrophiles because of the high tension of the three-membered ring system and the strong polarisation of the C--O bonds. This is of significant relevance because epoxides are frequent intermediary metabolites, which arise during the biotransformation of foreign compounds []. This domain is often found in conjunction with IPR000073 from INTERPRO.; GO: 0004301 epoxide hydrolase activity, 0009636 response to toxin, 0016020 membrane; PDB: 3G0I_B 3G02_A 1QO7_A.
Probab=96.53 E-value=0.011 Score=51.07 Aligned_cols=71 Identities=14% Similarity=0.239 Sum_probs=41.9
Q ss_pred CCCChHHHHHHhhhhc-chhHHHHHhhhccCCCCCCeeEEEEEECCeEEEEEEeCCC---CCeEEEECCCCCChHHHHHH
Q 008512 371 FGYSAATIAAAADAVC-SMEWYWLMSLRSLRSNEGVYSTRIWRWNGYQIQYTVAGKE---GPAILLVHGFGAFLEHYRDN 446 (563)
Q Consensus 371 ~g~~~~~ia~a~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~g~~l~y~~~g~~---~~~vlllHG~~~~~~~~~~~ 446 (563)
+|....|+...++-+. .++|-.....- +.++-...+++|..||+....+. ..+|||+|||+|+...|.++
T Consensus 38 ~G~~~~~l~~L~~yW~~~fDWr~~E~~l------N~~phf~t~I~g~~iHFih~rs~~~~aiPLll~HGWPgSf~Ef~~v 111 (112)
T PF06441_consen 38 YGTPLDWLKELVDYWRNEFDWRKHEARL------NSFPHFKTEIDGLDIHFIHVRSKRPNAIPLLLLHGWPGSFLEFLKV 111 (112)
T ss_dssp TSS-HHHHHHHHHHHHHT--HHHHHHHH------TTS-EEEEEETTEEEEEEEE--S-TT-EEEEEE--SS--GGGGHHH
T ss_pred cCCCHHHHHHHHHHHhhcCChHHHHHHH------HcCCCeeEEEeeEEEEEEEeeCCCCCCeEEEEECCCCccHHhHHhh
Confidence 5666667666655443 66777655432 35566667789999998776543 45899999999998888765
Q ss_pred H
Q 008512 447 I 447 (563)
Q Consensus 447 ~ 447 (563)
+
T Consensus 112 I 112 (112)
T PF06441_consen 112 I 112 (112)
T ss_dssp H
T ss_pred C
Confidence 4
No 161
>COG2936 Predicted acyl esterases [General function prediction only]
Probab=96.48 E-value=0.0087 Score=65.32 Aligned_cols=114 Identities=13% Similarity=0.019 Sum_probs=74.1
Q ss_pred CCeEEEEEEeCCC----CCeEEEEC--CCCCC---hHHHHHHHH---HHhhCCCEEEEEcCCCCCCCCCCCcC-CC--HH
Q 008512 414 NGYQIQYTVAGKE----GPAILLVH--GFGAF---LEHYRDNIY---DIADGGNRVWAITLLGFGRSEKPNIV-YT--EL 478 (563)
Q Consensus 414 ~g~~l~y~~~g~~----~~~vlllH--G~~~~---~~~~~~~~~---~l~~~g~~Vi~~D~~G~G~S~~~~~~-~~--~~ 478 (563)
||++|+...+-++ .|+++..+ -+.-. ........+ .++.+||.|+..|.||.|.|++.-.. .+ .+
T Consensus 28 DGvrL~~dIy~Pa~~g~~Pvll~~~~~Py~k~~~~~~~~~~~~p~~~~~aa~GYavV~qDvRG~~~SeG~~~~~~~~E~~ 107 (563)
T COG2936 28 DGVRLAADIYRPAGAGPLPVLLSRTRLPYRKRNGTFGPQLSALPQPAWFAAQGYAVVNQDVRGRGGSEGVFDPESSREAE 107 (563)
T ss_pred CCeEEEEEEEccCCCCCCceeEEeeccccccccccCcchhhcccccceeecCceEEEEecccccccCCcccceecccccc
Confidence 8999997766543 46777777 22211 121223334 57778999999999999999986432 22 12
Q ss_pred HHHHHHHHHHHHh--CCCcEEEEEechhHHHHHHHHhc-cCcccEEEEEcCcC
Q 008512 479 MWSELLRDFTVEV--VGEPVHLIGNSIGGMFLSTNLTR-GKLYAFLLSVNYLL 528 (563)
Q Consensus 479 ~~~~~l~~~l~~l--~~~~i~lvGhS~Gg~ia~~~a~~-~~~~~~v~~~~~~~ 528 (563)
| ..|+.+.+... ..++|.++|.|++|.....+|+. |+-.++|+...+..
T Consensus 108 D-g~D~I~Wia~QpWsNG~Vgm~G~SY~g~tq~~~Aa~~pPaLkai~p~~~~~ 159 (563)
T COG2936 108 D-GYDTIEWLAKQPWSNGNVGMLGLSYLGFTQLAAAALQPPALKAIAPTEGLV 159 (563)
T ss_pred c-hhHHHHHHHhCCccCCeeeeecccHHHHHHHHHHhcCCchheeeccccccc
Confidence 2 23333444333 34899999999999999988876 66566665544433
No 162
>KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=96.44 E-value=0.029 Score=64.67 Aligned_cols=127 Identities=13% Similarity=0.003 Sum_probs=85.3
Q ss_pred CeeEEEEEECCeEEEEEEeCCC-------CCeEEEECCCCCChHH---HH-HHHH-HHhhCCCEEEEEcCCCCCCCCCC-
Q 008512 405 VYSTRIWRWNGYQIQYTVAGKE-------GPAILLVHGFGAFLEH---YR-DNIY-DIADGGNRVWAITLLGFGRSEKP- 471 (563)
Q Consensus 405 ~~~~~~~~~~g~~l~y~~~g~~-------~~~vlllHG~~~~~~~---~~-~~~~-~l~~~g~~Vi~~D~~G~G~S~~~- 471 (563)
..+...+..+|...++...-|+ =|.+|.+||.+++... |. .+.. .....|+-|+.+|.||-|.....
T Consensus 497 ~~~~~~i~~~~~~~~~~~~lP~~~~~~~kyPllv~~yGGP~sq~v~~~~~~~~~~~~~s~~g~~v~~vd~RGs~~~G~~~ 576 (755)
T KOG2100|consen 497 IVEFGKIEIDGITANAILILPPNFDPSKKYPLLVVVYGGPGSQSVTSKFSVDWNEVVVSSRGFAVLQVDGRGSGGYGWDF 576 (755)
T ss_pred cceeEEEEeccEEEEEEEecCCCCCCCCCCCEEEEecCCCCcceeeeeEEecHHHHhhccCCeEEEEEcCCCcCCcchhH
Confidence 3444555568988888765442 2578899998863211 11 2222 45567999999999998765332
Q ss_pred -------CcCCCHHHHHHHHHHHHHHhC--CCcEEEEEechhHHHHHHHHhc-c-CcccEEEEEcCcCChH
Q 008512 472 -------NIVYTELMWSELLRDFTVEVV--GEPVHLIGNSIGGMFLSTNLTR-G-KLYAFLLSVNYLLSRS 531 (563)
Q Consensus 472 -------~~~~~~~~~~~~l~~~l~~l~--~~~i~lvGhS~Gg~ia~~~a~~-~-~~~~~v~~~~~~~~~~ 531 (563)
-.....+|+...+..+++... ..++.++|+|.||.++...+.. + .+.+..+.+.++....
T Consensus 577 ~~~~~~~lG~~ev~D~~~~~~~~~~~~~iD~~ri~i~GwSyGGy~t~~~l~~~~~~~fkcgvavaPVtd~~ 647 (755)
T KOG2100|consen 577 RSALPRNLGDVEVKDQIEAVKKVLKLPFIDRSRVAIWGWSYGGYLTLKLLESDPGDVFKCGVAVAPVTDWL 647 (755)
T ss_pred HHHhhhhcCCcchHHHHHHHHHHHhcccccHHHeEEeccChHHHHHHHHhhhCcCceEEEEEEecceeeee
Confidence 123466777777777776553 3789999999999999999877 4 5566557766665543
No 163
>KOG3043 consensus Predicted hydrolase related to dienelactone hydrolase [General function prediction only]
Probab=96.40 E-value=0.015 Score=55.77 Aligned_cols=106 Identities=10% Similarity=0.009 Sum_probs=67.3
Q ss_pred CCeEEEECCCCCChH-HHHHHHHHHhhCCCEEEEEcC-CCCCCCCC-CC-------cCCCHHHHHHHHHHHHHHh---C-
Q 008512 427 GPAILLVHGFGAFLE-HYRDNIYDIADGGNRVWAITL-LGFGRSEK-PN-------IVYTELMWSELLRDFTVEV---V- 492 (563)
Q Consensus 427 ~~~vlllHG~~~~~~-~~~~~~~~l~~~g~~Vi~~D~-~G~G~S~~-~~-------~~~~~~~~~~~l~~~l~~l---~- 492 (563)
+..||+|.-+.|... .-...++.++..||.|+++|+ +|=-.|.. .. ...+..-.-.++..+++.+ +
T Consensus 39 ~~~li~i~DvfG~~~~n~r~~Adk~A~~Gy~v~vPD~~~Gdp~~~~~~~~~~~~w~~~~~~~~~~~~i~~v~k~lk~~g~ 118 (242)
T KOG3043|consen 39 KKVLIVIQDVFGFQFPNTREGADKVALNGYTVLVPDFFRGDPWSPSLQKSERPEWMKGHSPPKIWKDITAVVKWLKNHGD 118 (242)
T ss_pred CeEEEEEEeeeccccHHHHHHHHHHhcCCcEEEcchhhcCCCCCCCCChhhhHHHHhcCCcccchhHHHHHHHHHHHcCC
Confidence 447888887766544 466788999999999999996 44222221 11 1122222233344444333 3
Q ss_pred CCcEEEEEechhHHHHHHHHhc-cCcccEEEEEcCcCChHH
Q 008512 493 GEPVHLIGNSIGGMFLSTNLTR-GKLYAFLLSVNYLLSRSI 532 (563)
Q Consensus 493 ~~~i~lvGhS~Gg~ia~~~a~~-~~~~~~v~~~~~~~~~~~ 532 (563)
..+|-++|.+|||-++..+... +...+.+.+.+.+.+...
T Consensus 119 ~kkIGv~GfCwGak~vv~~~~~~~~f~a~v~~hps~~d~~D 159 (242)
T KOG3043|consen 119 SKKIGVVGFCWGAKVVVTLSAKDPEFDAGVSFHPSFVDSAD 159 (242)
T ss_pred cceeeEEEEeecceEEEEeeccchhheeeeEecCCcCChhH
Confidence 5789999999999999888766 566666666666555333
No 164
>PF03959 FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 This entry represents proteins belonging to the AB hydrolase family. It consists of serine hydrolases of unknown specificity [, ] and includes uncharacterised proteins.; PDB: 1YCD_A.
Probab=96.30 E-value=0.024 Score=55.02 Aligned_cols=104 Identities=19% Similarity=0.150 Sum_probs=51.5
Q ss_pred CCCeEEEECCCCCChHHHHHHH----HHHhhCCCEEEEEcCCC-----CCCCC------------CCC-----------c
Q 008512 426 EGPAILLVHGFGAFLEHYRDNI----YDIADGGNRVWAITLLG-----FGRSE------------KPN-----------I 473 (563)
Q Consensus 426 ~~~~vlllHG~~~~~~~~~~~~----~~l~~~g~~Vi~~D~~G-----~G~S~------------~~~-----------~ 473 (563)
.++.||++||++.+.+.|.... +.|.+.++..+.+|-|- -|... .+. .
T Consensus 3 ~k~riLcLHG~~~na~if~~q~~~l~~~l~~~~~ef~f~dgP~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~ 82 (212)
T PF03959_consen 3 RKPRILCLHGYGQNAEIFRQQTSALRKALKKLDFEFVFVDGPHEVPPGPGIEPFSSEAESAFGDPGPFYSWWDPDDDDHE 82 (212)
T ss_dssp ---EEEEE--TT--HHHHHHHTHHHHHHHHHTT-EEEEE--SEE---GGG-SS---HHHHHHHHTT--EESS---S-SGG
T ss_pred CCceEEEeCCCCcCHHHHHHHHHHHHHHHhhCcEEEEEecCCcccCCcccccccccccccccCCCCcceeeeecCCCccc
Confidence 3678999999999999988554 34444368887776442 11110 000 0
Q ss_pred CCCHHHHHHHHHHHHHHhCCCcEEEEEechhHHHHHHHHhc---c------CcccEEEEEcCcCCh
Q 008512 474 VYTELMWSELLRDFTVEVVGEPVHLIGNSIGGMFLSTNLTR---G------KLYAFLLSVNYLLSR 530 (563)
Q Consensus 474 ~~~~~~~~~~l~~~l~~l~~~~i~lvGhS~Gg~ia~~~a~~---~------~~~~~v~~~~~~~~~ 530 (563)
...+++..+.+.+++++.+. -..|+|+|.||.+|..++.. . ...+.+|++++..+.
T Consensus 83 ~~~~~~sl~~l~~~i~~~GP-fdGvlGFSQGA~lAa~ll~~~~~~~~~~~~~~~kf~V~~sg~~p~ 147 (212)
T PF03959_consen 83 YEGLDESLDYLRDYIEENGP-FDGVLGFSQGAALAALLLALQQRGRPDGAHPPFKFAVFISGFPPP 147 (212)
T ss_dssp G---HHHHHHHHHHHHHH----SEEEEETHHHHHHHHHHHHHHHHST--T----SEEEEES----E
T ss_pred ccCHHHHHHHHHHHHHhcCC-eEEEEeecHHHHHHHHHHHHHHhhcccccCCCceEEEEEcccCCC
Confidence 12345556666666666443 46789999999999888743 1 124667777766543
No 165
>cd00312 Esterase_lipase Esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These catalytic residues are responsible for the nucleophilic attack on the carbonyl carbon atom of the ester bond. In contrast with other alpha/beta hydrolase fold family members, p-nitrobenzyl esterase and acetylcholine esterase have a Glu instead of Asp at the active site carboxylate.
Probab=96.27 E-value=0.01 Score=65.15 Aligned_cols=87 Identities=23% Similarity=0.211 Sum_probs=53.8
Q ss_pred CCCeEEEECCCC---CChHHHHHHHHHHhhC--CCEEEEEcCC----CCCCCCCC--CcCCCHHHHH---HHHHHHHHHh
Q 008512 426 EGPAILLVHGFG---AFLEHYRDNIYDIADG--GNRVWAITLL----GFGRSEKP--NIVYTELMWS---ELLRDFTVEV 491 (563)
Q Consensus 426 ~~~~vlllHG~~---~~~~~~~~~~~~l~~~--g~~Vi~~D~~----G~G~S~~~--~~~~~~~~~~---~~l~~~l~~l 491 (563)
..|+||+|||.+ ++...+ ....|+.. ++-|+++++| |+..+... .....+.|.. +.+.+-++.+
T Consensus 94 ~~pv~v~ihGG~~~~g~~~~~--~~~~~~~~~~~~~vv~~~yRlg~~g~~~~~~~~~~~n~g~~D~~~al~wv~~~i~~f 171 (493)
T cd00312 94 SLPVMVWIHGGGFMFGSGSLY--PGDGLAREGDNVIVVSINYRLGVLGFLSTGDIELPGNYGLKDQRLALKWVQDNIAAF 171 (493)
T ss_pred CCCEEEEEcCCccccCCCCCC--ChHHHHhcCCCEEEEEecccccccccccCCCCCCCcchhHHHHHHHHHHHHHHHHHh
Confidence 468999999964 222222 22334433 3899999998 33333211 2233444544 4444445555
Q ss_pred CC--CcEEEEEechhHHHHHHHHhc
Q 008512 492 VG--EPVHLIGNSIGGMFLSTNLTR 514 (563)
Q Consensus 492 ~~--~~i~lvGhS~Gg~ia~~~a~~ 514 (563)
+. .+|.|+|+|.||..+..++..
T Consensus 172 ggd~~~v~~~G~SaG~~~~~~~~~~ 196 (493)
T cd00312 172 GGDPDSVTIFGESAGGASVSLLLLS 196 (493)
T ss_pred CCCcceEEEEeecHHHHHhhhHhhC
Confidence 54 679999999999999888765
No 166
>COG3243 PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid metabolism]
Probab=96.27 E-value=0.0063 Score=63.58 Aligned_cols=94 Identities=17% Similarity=0.128 Sum_probs=66.2
Q ss_pred CCeEEEECCCCCChHHHH-----HHHHHHhhCCCEEEEEcCCCCCCCCCCCcCCCHHHH-----HHHHHHHHHHhCCCcE
Q 008512 427 GPAILLVHGFGAFLEHYR-----DNIYDIADGGNRVWAITLLGFGRSEKPNIVYTELMW-----SELLRDFTVEVVGEPV 496 (563)
Q Consensus 427 ~~~vlllHG~~~~~~~~~-----~~~~~l~~~g~~Vi~~D~~G~G~S~~~~~~~~~~~~-----~~~l~~~l~~l~~~~i 496 (563)
+.++|++|-+-.....+. .++..|..+|..|+.+|+++=..+.. ..+++++ .+.+..+.+..+.++|
T Consensus 107 ~~PlLiVpP~iNk~yi~Dl~~~~s~V~~l~~~g~~vfvIsw~nPd~~~~---~~~~edYi~e~l~~aid~v~~itg~~~I 183 (445)
T COG3243 107 KRPLLIVPPWINKFYILDLSPEKSLVRWLLEQGLDVFVISWRNPDASLA---AKNLEDYILEGLSEAIDTVKDITGQKDI 183 (445)
T ss_pred CCceEeeccccCceeEEeCCCCccHHHHHHHcCCceEEEeccCchHhhh---hccHHHHHHHHHHHHHHHHHHHhCcccc
Confidence 568999999866544333 67888999999999999986554443 3344444 4555555666677999
Q ss_pred EEEEechhHHHHHHHHhc-cCc-ccEEEE
Q 008512 497 HLIGNSIGGMFLSTNLTR-GKL-YAFLLS 523 (563)
Q Consensus 497 ~lvGhS~Gg~ia~~~a~~-~~~-~~~v~~ 523 (563)
.++|+|+||.++..+++. +.. ++.+.+
T Consensus 184 nliGyCvGGtl~~~ala~~~~k~I~S~T~ 212 (445)
T COG3243 184 NLIGYCVGGTLLAAALALMAAKRIKSLTL 212 (445)
T ss_pred ceeeEecchHHHHHHHHhhhhccccccee
Confidence 999999999999887664 332 444433
No 167
>PRK10439 enterobactin/ferric enterobactin esterase; Provisional
Probab=96.20 E-value=0.029 Score=60.14 Aligned_cols=102 Identities=16% Similarity=0.090 Sum_probs=59.8
Q ss_pred CCeEEEECCCCCC-hHHHHHHHHHHhhCCC----EEEEEcCCCC-CCCCC-CCcCCCHHHHHHHHHHHHHHh-C----CC
Q 008512 427 GPAILLVHGFGAF-LEHYRDNIYDIADGGN----RVWAITLLGF-GRSEK-PNIVYTELMWSELLRDFTVEV-V----GE 494 (563)
Q Consensus 427 ~~~vlllHG~~~~-~~~~~~~~~~l~~~g~----~Vi~~D~~G~-G~S~~-~~~~~~~~~~~~~l~~~l~~l-~----~~ 494 (563)
-|.|+|+||..-. ......+++.|.+.|. -|+.+|..+. ..+.. +....-...+.+++...+++. . .+
T Consensus 209 ~PvlyllDG~~w~~~~~~~~~ld~li~~g~i~P~ivV~id~~~~~~R~~el~~~~~f~~~l~~eLlP~I~~~y~~~~d~~ 288 (411)
T PRK10439 209 RPLAILLDGQFWAESMPVWPALDSLTHRGQLPPAVYLLIDAIDTTHRSQELPCNADFWLAVQQELLPQVRAIAPFSDDAD 288 (411)
T ss_pred CCEEEEEECHHhhhcCCHHHHHHHHHHcCCCCceEEEEECCCCcccccccCCchHHHHHHHHHHHHHHHHHhCCCCCCcc
Confidence 4789999995311 1112245566665552 3566765321 11100 111011223445555555543 2 25
Q ss_pred cEEEEEechhHHHHHHHHhc-cCcccEEEEEcCcC
Q 008512 495 PVHLIGNSIGGMFLSTNLTR-GKLYAFLLSVNYLL 528 (563)
Q Consensus 495 ~i~lvGhS~Gg~ia~~~a~~-~~~~~~v~~~~~~~ 528 (563)
+.+|.|+||||+.++.++.+ |+.++.++..++..
T Consensus 289 ~~~IaG~S~GGl~AL~~al~~Pd~Fg~v~s~Sgs~ 323 (411)
T PRK10439 289 RTVVAGQSFGGLAALYAGLHWPERFGCVLSQSGSF 323 (411)
T ss_pred ceEEEEEChHHHHHHHHHHhCcccccEEEEeccce
Confidence 68999999999999999877 99999988877753
No 168
>KOG2541 consensus Palmitoyl protein thioesterase [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones]
Probab=96.09 E-value=0.04 Score=54.24 Aligned_cols=93 Identities=14% Similarity=0.221 Sum_probs=59.2
Q ss_pred CeEEEECCCCCChHH--HHHHHHHHhh-CCCEEEEEcCCCCCCCCCCCcCCCHHHHHHHHHHHHHHhCC--CcEEEEEec
Q 008512 428 PAILLVHGFGAFLEH--YRDNIYDIAD-GGNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFTVEVVG--EPVHLIGNS 502 (563)
Q Consensus 428 ~~vlllHG~~~~~~~--~~~~~~~l~~-~g~~Vi~~D~~G~G~S~~~~~~~~~~~~~~~l~~~l~~l~~--~~i~lvGhS 502 (563)
.++|++||++++... +..+.+.+.+ .|..|++.|. |-| .....-..+.+.++.+.+.+..... .-++++|.|
T Consensus 24 ~P~ii~HGigd~c~~~~~~~~~q~l~~~~g~~v~~lei-g~g--~~~s~l~pl~~Qv~~~ce~v~~m~~lsqGynivg~S 100 (296)
T KOG2541|consen 24 VPVIVWHGIGDSCSSLSMANLTQLLEELPGSPVYCLEI-GDG--IKDSSLMPLWEQVDVACEKVKQMPELSQGYNIVGYS 100 (296)
T ss_pred CCEEEEeccCcccccchHHHHHHHHHhCCCCeeEEEEe-cCC--cchhhhccHHHHHHHHHHHHhcchhccCceEEEEEc
Confidence 579999999987655 5555555554 3788888886 334 1111122344555555554443322 569999999
Q ss_pred hhHHHHHHHHhc---cCcccEEEE
Q 008512 503 IGGMFLSTNLTR---GKLYAFLLS 523 (563)
Q Consensus 503 ~Gg~ia~~~a~~---~~~~~~v~~ 523 (563)
.||.++..++.. |++...|-+
T Consensus 101 QGglv~Raliq~cd~ppV~n~ISL 124 (296)
T KOG2541|consen 101 QGGLVARALIQFCDNPPVKNFISL 124 (296)
T ss_pred cccHHHHHHHHhCCCCCcceeEec
Confidence 999999999886 444444433
No 169
>PLN02606 palmitoyl-protein thioesterase
Probab=96.08 E-value=0.053 Score=54.92 Aligned_cols=97 Identities=12% Similarity=0.136 Sum_probs=57.3
Q ss_pred CCeEEEECCCCC--ChHHHHHHHHHHhh-CCCEEEEEcCCCCCCCCCCCcCCCHHHHHHHHHHHHHHhC--CCcEEEEEe
Q 008512 427 GPAILLVHGFGA--FLEHYRDNIYDIAD-GGNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFTVEVV--GEPVHLIGN 501 (563)
Q Consensus 427 ~~~vlllHG~~~--~~~~~~~~~~~l~~-~g~~Vi~~D~~G~G~S~~~~~~~~~~~~~~~l~~~l~~l~--~~~i~lvGh 501 (563)
..|||+.||+++ +...+..+.+.+.+ .|+.+..+- .|-|. .........+.++.+-+-+.... ..-++++|+
T Consensus 26 ~~PvViwHGlgD~~~~~~~~~~~~~i~~~~~~pg~~v~-ig~~~--~~s~~~~~~~Qv~~vce~l~~~~~L~~G~naIGf 102 (306)
T PLN02606 26 SVPFVLFHGFGGECSNGKVSNLTQFLINHSGYPGTCVE-IGNGV--QDSLFMPLRQQASIACEKIKQMKELSEGYNIVAE 102 (306)
T ss_pred CCCEEEECCCCcccCCchHHHHHHHHHhCCCCCeEEEE-ECCCc--ccccccCHHHHHHHHHHHHhcchhhcCceEEEEE
Confidence 458999999994 44566677777752 255554443 22121 01111234444444444443321 145999999
Q ss_pred chhHHHHHHHHhc-cC--cccEEEEEcC
Q 008512 502 SIGGMFLSTNLTR-GK--LYAFLLSVNY 526 (563)
Q Consensus 502 S~Gg~ia~~~a~~-~~--~~~~v~~~~~ 526 (563)
|.||.++..++.+ +. -+.-++...+
T Consensus 103 SQGglflRa~ierc~~~p~V~nlISlgg 130 (306)
T PLN02606 103 SQGNLVARGLIEFCDNAPPVINYVSLGG 130 (306)
T ss_pred cchhHHHHHHHHHCCCCCCcceEEEecC
Confidence 9999999999987 33 3555555444
No 170
>PF10340 DUF2424: Protein of unknown function (DUF2424); InterPro: IPR019436 Sterol homeostasis in eukaryotic cells relies on the reciprocal interconversion of free sterols and steryl esters. In Saccharomyces cerevisiae (Baker's yeast) sterol acetylation requires the acetyltransferase Atf2, whereas deacetylation requires Say1, a membrane-anchored deacetylase with a putative active site in the ER lumen. Lack of Say1 results in the secretion of acetylated sterols into the culture medium, indicating that the substrate specificity of Say1 determines whether acetylated sterols are secreted from the cells or whether they are deacetylated and retained. In S. cerevisiae cells lacking Say1 or Atf2 are sensitive against the plant-derived allylbenzene eugenol and both Say1 and Atf2 affect pregnenolone toxicity, indicating that lipid acetylation acts as a detoxification pathway []. Homologues of Say1 are present in the mammalian genome and can functionally substitute for Say1 in yeast demonstrating that part of this pathway has been evolutionarily conserved [].
Probab=96.06 E-value=0.045 Score=57.22 Aligned_cols=99 Identities=12% Similarity=0.065 Sum_probs=62.7
Q ss_pred CCeEEEECCCCC----ChHHHHHH--HHHHhhCCCEEEEEcCCCCCCC-CCCCcCCCHHHHHHHHHHHHHHhCCCcEEEE
Q 008512 427 GPAILLVHGFGA----FLEHYRDN--IYDIADGGNRVWAITLLGFGRS-EKPNIVYTELMWSELLRDFTVEVVGEPVHLI 499 (563)
Q Consensus 427 ~~~vlllHG~~~----~~~~~~~~--~~~l~~~g~~Vi~~D~~G~G~S-~~~~~~~~~~~~~~~l~~~l~~l~~~~i~lv 499 (563)
+|.||++||.|- ....+..+ +..+.. ...+++.|+.-...- .+.....-+.+..+....+++..+.+.|+|+
T Consensus 122 DpVlIYlHGGGY~l~~~p~qi~~L~~i~~~l~-~~SILvLDYsLt~~~~~~~~yPtQL~qlv~~Y~~Lv~~~G~~nI~Lm 200 (374)
T PF10340_consen 122 DPVLIYLHGGGYFLGTTPSQIEFLLNIYKLLP-EVSILVLDYSLTSSDEHGHKYPTQLRQLVATYDYLVESEGNKNIILM 200 (374)
T ss_pred CcEEEEEcCCeeEecCCHHHHHHHHHHHHHcC-CCeEEEEeccccccccCCCcCchHHHHHHHHHHHHHhccCCCeEEEE
Confidence 689999999863 22222222 222223 458888888754311 1122344566777777777877788999999
Q ss_pred EechhHHHHHHHHhc------cCcccEEEEEcC
Q 008512 500 GNSIGGMFLSTNLTR------GKLYAFLLSVNY 526 (563)
Q Consensus 500 GhS~Gg~ia~~~a~~------~~~~~~v~~~~~ 526 (563)
|-|.||.+++.+++. ....+.+++++|
T Consensus 201 GDSAGGnL~Ls~LqyL~~~~~~~~Pk~~iLISP 233 (374)
T PF10340_consen 201 GDSAGGNLALSFLQYLKKPNKLPYPKSAILISP 233 (374)
T ss_pred ecCccHHHHHHHHHHHhhcCCCCCCceeEEECC
Confidence 999999999887642 123455555555
No 171
>KOG2112 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=95.97 E-value=0.028 Score=53.49 Aligned_cols=102 Identities=11% Similarity=0.018 Sum_probs=65.8
Q ss_pred CeEEEECCCCCChHHHHHHHHHHhhCCCEEEEEcCCCCCCCC---------CC---------CcCCCHHHHHHHHHHHHH
Q 008512 428 PAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSE---------KP---------NIVYTELMWSELLRDFTV 489 (563)
Q Consensus 428 ~~vlllHG~~~~~~~~~~~~~~l~~~g~~Vi~~D~~G~G~S~---------~~---------~~~~~~~~~~~~l~~~l~ 489 (563)
.+||++||.+++...|..+++.+.-.+..-+++.-|-.-.+. .+ ...-++...++.+..+++
T Consensus 4 atIi~LHglGDsg~~~~~~~~~l~l~NiKwIcP~aP~rpvt~~~G~~~~aWfd~~~~~~~~~~d~~~~~~aa~~i~~Li~ 83 (206)
T KOG2112|consen 4 ATIIFLHGLGDSGSGWAQFLKQLPLPNIKWICPTAPSRPVTLNGGAFMNAWFDIMELSSDAPEDEEGLHRAADNIANLID 83 (206)
T ss_pred EEEEEEecCCCCCccHHHHHHcCCCCCeeEEcCCCCCCcccccCCCcccceecceeeCcccchhhhHHHHHHHHHHHHHH
Confidence 379999999999999988888876556666665333111110 00 011234445566666665
Q ss_pred Hh---C--CCcEEEEEechhHHHHHHHHhc-cCcccEEEEEcCcCC
Q 008512 490 EV---V--GEPVHLIGNSIGGMFLSTNLTR-GKLYAFLLSVNYLLS 529 (563)
Q Consensus 490 ~l---~--~~~i~lvGhS~Gg~ia~~~a~~-~~~~~~v~~~~~~~~ 529 (563)
+. + ..+|.+-|.||||.+++..+.. +.....++...+..+
T Consensus 84 ~e~~~Gi~~~rI~igGfs~G~a~aL~~~~~~~~~l~G~~~~s~~~p 129 (206)
T KOG2112|consen 84 NEPANGIPSNRIGIGGFSQGGALALYSALTYPKALGGIFALSGFLP 129 (206)
T ss_pred HHHHcCCCccceeEcccCchHHHHHHHHhccccccceeeccccccc
Confidence 43 2 3679999999999999998876 555555555555544
No 172
>COG2272 PnbA Carboxylesterase type B [Lipid metabolism]
Probab=95.96 E-value=0.028 Score=60.05 Aligned_cols=101 Identities=20% Similarity=0.135 Sum_probs=63.2
Q ss_pred CCeEEEECCCC---CChHHHHHHHHHHhhCC-CEEEEEcCC----CC------CCCCCCCcCCCHHHH---HHHHHHHHH
Q 008512 427 GPAILLVHGFG---AFLEHYRDNIYDIADGG-NRVWAITLL----GF------GRSEKPNIVYTELMW---SELLRDFTV 489 (563)
Q Consensus 427 ~~~vlllHG~~---~~~~~~~~~~~~l~~~g-~~Vi~~D~~----G~------G~S~~~~~~~~~~~~---~~~l~~~l~ 489 (563)
.|++|+|||.+ |+......--..|++.| +-|+++++| || +..+.......+.|+ .+.+.+-|+
T Consensus 94 ~PVmV~IHGG~y~~Gs~s~~~ydgs~La~~g~vVvVSvNYRLG~lGfL~~~~~~~~~~~~~n~Gl~DqilALkWV~~NIe 173 (491)
T COG2272 94 LPVMVYIHGGGYIMGSGSEPLYDGSALAARGDVVVVSVNYRLGALGFLDLSSLDTEDAFASNLGLLDQILALKWVRDNIE 173 (491)
T ss_pred CcEEEEEeccccccCCCcccccChHHHHhcCCEEEEEeCcccccceeeehhhccccccccccccHHHHHHHHHHHHHHHH
Confidence 58999999964 34333222245677777 888888887 22 111111123455555 455556677
Q ss_pred HhCC--CcEEEEEechhHHHHHHHHhccC----cccEEEEEcCc
Q 008512 490 EVVG--EPVHLIGNSIGGMFLSTNLTRGK----LYAFLLSVNYL 527 (563)
Q Consensus 490 ~l~~--~~i~lvGhS~Gg~ia~~~a~~~~----~~~~v~~~~~~ 527 (563)
+++. +.|.|+|+|-||+.++.+.+-|. +.++|+.++..
T Consensus 174 ~FGGDp~NVTl~GeSAGa~si~~Lla~P~AkGLF~rAi~~Sg~~ 217 (491)
T COG2272 174 AFGGDPQNVTLFGESAGAASILTLLAVPSAKGLFHRAIALSGAA 217 (491)
T ss_pred HhCCCccceEEeeccchHHHHHHhhcCccchHHHHHHHHhCCCC
Confidence 8876 56999999999999988876543 33444444443
No 173
>KOG4840 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=95.90 E-value=0.027 Score=53.82 Aligned_cols=102 Identities=15% Similarity=0.004 Sum_probs=68.0
Q ss_pred CCCeEEEECCCCCCh---HHHHHHHHHHhhCCCEEEEEcCCCCCCCCCCCcCCCHHHHHHHHHHHHHHhCC----CcEEE
Q 008512 426 EGPAILLVHGFGAFL---EHYRDNIYDIADGGNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFTVEVVG----EPVHL 498 (563)
Q Consensus 426 ~~~~vlllHG~~~~~---~~~~~~~~~l~~~g~~Vi~~D~~G~G~S~~~~~~~~~~~~~~~l~~~l~~l~~----~~i~l 498 (563)
.+..||||-|++..- ..-..+...|.+.+|.++-+.++.+= ......++.+-++|+..++++++. ..|+|
T Consensus 35 ~~~~vvfiGGLgdgLl~~~y~~~L~~~lde~~wslVq~q~~Ssy---~G~Gt~slk~D~edl~~l~~Hi~~~~fSt~vVL 111 (299)
T KOG4840|consen 35 ESVKVVFIGGLGDGLLICLYTTMLNRYLDENSWSLVQPQLRSSY---NGYGTFSLKDDVEDLKCLLEHIQLCGFSTDVVL 111 (299)
T ss_pred eEEEEEEEcccCCCccccccHHHHHHHHhhccceeeeeeccccc---cccccccccccHHHHHHHHHHhhccCcccceEE
Confidence 355799999987642 33446778888889999998776221 001234566667888888887754 48999
Q ss_pred EEechhHHHHHHHHhc---cCcccEEEEEcCcCCh
Q 008512 499 IGNSIGGMFLSTNLTR---GKLYAFLLSVNYLLSR 530 (563)
Q Consensus 499 vGhS~Gg~ia~~~a~~---~~~~~~v~~~~~~~~~ 530 (563)
+|||.|..-.+.|.-+ +..+.+.++..++.++
T Consensus 112 ~GhSTGcQdi~yYlTnt~~~r~iraaIlqApVSDr 146 (299)
T KOG4840|consen 112 VGHSTGCQDIMYYLTNTTKDRKIRAAILQAPVSDR 146 (299)
T ss_pred EecCccchHHHHHHHhccchHHHHHHHHhCccchh
Confidence 9999999999888733 3333333444444433
No 174
>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....
Probab=95.67 E-value=0.039 Score=49.25 Aligned_cols=59 Identities=14% Similarity=0.184 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEechhHHHHHHHHhc----c----CcccEEEEEcCcCChHHHHHHh
Q 008512 479 MWSELLRDFTVEVVGEPVHLIGNSIGGMFLSTNLTR----G----KLYAFLLSVNYLLSRSIICRLF 537 (563)
Q Consensus 479 ~~~~~l~~~l~~l~~~~i~lvGhS~Gg~ia~~~a~~----~----~~~~~v~~~~~~~~~~~~~~~~ 537 (563)
...+.+..++++....++++.|||+||.+|..++.. . ..+..+...++......+...+
T Consensus 49 ~~~~~l~~~~~~~~~~~i~itGHSLGGalA~l~a~~l~~~~~~~~~~~~~~~fg~P~~~~~~~~~~~ 115 (140)
T PF01764_consen 49 QILDALKELVEKYPDYSIVITGHSLGGALASLAAADLASHGPSSSSNVKCYTFGAPRVGNSAFAKWY 115 (140)
T ss_dssp HHHHHHHHHHHHSTTSEEEEEEETHHHHHHHHHHHHHHHCTTTSTTTEEEEEES-S--BEHHHHHHH
T ss_pred HHHHHHHHHHhcccCccchhhccchHHHHHHHHHHhhhhcccccccceeeeecCCccccCHHHHHHH
Confidence 455666666666666789999999999999888754 1 2344444444444344444433
No 175
>PF00450 Peptidase_S10: Serine carboxypeptidase; InterPro: IPR001563 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S10 (clan SC). The type example is carboxypeptidase Y from Saccharomyces cerevisiae (Baker's yeast) []. All known carboxypeptidases are either metallo carboxypeptidases or serine carboxypeptidases (3.4.16.5 from EC and 3.4.16.6 from EC). The catalytic activity of the serine carboxypeptidases, like that of the trypsin family serine proteases, is provided by a charge relay system involving an aspartic acid residue hydrogen-bonded to a histidine, which is itself hydrogen-bonded to a serine []. The sequences surrounding the active site serine and histidine residues are highly conserved in all the serine carboxypeptidases.; GO: 0004185 serine-type carboxypeptidase activity, 0006508 proteolysis; PDB: 1AC5_A 1WHS_B 3SC2_B 1WHT_A 1BCR_A 1BCS_A 1GXS_A 1IVY_A 1WPX_A 1YSC_A ....
Probab=95.66 E-value=0.13 Score=54.89 Aligned_cols=126 Identities=17% Similarity=0.126 Sum_probs=80.5
Q ss_pred eeEEEEEEC---CeEEEEEEeCC-----CCCeEEEECCCCCChHHHHHHHHH----Hhh--------------CCCEEEE
Q 008512 406 YSTRIWRWN---GYQIQYTVAGK-----EGPAILLVHGFGAFLEHYRDNIYD----IAD--------------GGNRVWA 459 (563)
Q Consensus 406 ~~~~~~~~~---g~~l~y~~~g~-----~~~~vlllHG~~~~~~~~~~~~~~----l~~--------------~g~~Vi~ 459 (563)
...=++.++ +.+++|..... ..|.||.+.|.+|.+..+..+.+. +.. .-.+++-
T Consensus 11 ~~sGyl~~~~~~~~~lfyw~~~s~~~~~~~Pl~~wlnGGPG~SS~~g~f~e~GP~~~~~~~~~~l~~n~~sW~~~an~l~ 90 (415)
T PF00450_consen 11 QYSGYLPVNDNENAHLFYWFFESRNDPEDDPLILWLNGGPGCSSMWGLFGENGPFRINPDGPYTLEDNPYSWNKFANLLF 90 (415)
T ss_dssp EEEEEEEECTTTTEEEEEEEEE-SSGGCSS-EEEEEE-TTTB-THHHHHCTTSSEEEETTSTSEEEE-TT-GGGTSEEEE
T ss_pred EEEEEEecCCCCCcEEEEEEEEeCCCCCCccEEEEecCCceeccccccccccCceEEeecccccccccccccccccceEE
Confidence 334455665 67888765542 268999999999988887444321 110 1368999
Q ss_pred Ec-CCCCCCCCCCCc---CCCHHHHHHHHHHHHHHh-------CCCcEEEEEechhHHHHHHHHhc----c------C-c
Q 008512 460 IT-LLGFGRSEKPNI---VYTELMWSELLRDFTVEV-------VGEPVHLIGNSIGGMFLSTNLTR----G------K-L 517 (563)
Q Consensus 460 ~D-~~G~G~S~~~~~---~~~~~~~~~~l~~~l~~l-------~~~~i~lvGhS~Gg~ia~~~a~~----~------~-~ 517 (563)
+| ..|.|.|..... ..+.++.++++..++..+ ...+++|.|-|+||..+-.+|.. . . -
T Consensus 91 iD~PvGtGfS~~~~~~~~~~~~~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYgG~yvP~~a~~i~~~~~~~~~~~in 170 (415)
T PF00450_consen 91 IDQPVGTGFSYGNDPSDYVWNDDQAAEDLYEFLQQFFQKFPEYRSNPLYIAGESYGGHYVPALASYILQQNKKGDQPKIN 170 (415)
T ss_dssp E--STTSTT-EESSGGGGS-SHHHHHHHHHHHHHHHHHHSGGGTTSEEEEEEETTHHHHHHHHHHHHHHHTCC--STTSE
T ss_pred EeecCceEEeeccccccccchhhHHHHHHHHHHHHhhhhhhhccCCCEEEEccccccccchhhHHhhhhccccccccccc
Confidence 99 559999965442 347777888888777654 34689999999999988776642 2 1 2
Q ss_pred ccEEEEEcCcCChH
Q 008512 518 YAFLLSVNYLLSRS 531 (563)
Q Consensus 518 ~~~v~~~~~~~~~~ 531 (563)
.+.+++.++.....
T Consensus 171 LkGi~IGng~~dp~ 184 (415)
T PF00450_consen 171 LKGIAIGNGWIDPR 184 (415)
T ss_dssp EEEEEEESE-SBHH
T ss_pred cccceecCcccccc
Confidence 56788888877664
No 176
>PF02450 LCAT: Lecithin:cholesterol acyltransferase; InterPro: IPR003386 Lecithin:cholesterol acyltransferase (LACT), also known as phosphatidylcholine-sterol acyltransferase (2.3.1.43 from EC), is involved in extracellular metabolism of plasma lipoproteins, including cholesterol. It esterifies the free cholesterol transported in plasma lipoproteins, and is activated by apolipoprotein A-I. Defects in LACT cause Norum and Fish eye diseases. This family also includes phospholipid:diacylglycerol acyltransferase (PDAT)(2.3.1.158 from EC), which is involved in triacylglycerol formation by an acyl-CoA independent pathway. The enzyme specifically transfers acyl groups from the sn-2 position of a phospholipid to diacylglycerol, thus forming an sn-1-lysophospholipid [].; GO: 0008374 O-acyltransferase activity, 0006629 lipid metabolic process
Probab=95.65 E-value=0.025 Score=60.18 Aligned_cols=65 Identities=20% Similarity=0.184 Sum_probs=43.9
Q ss_pred HHHHHHHHHhhCCCEE----EE--EcCCCCCCCCCCCcCCCHHHHHHHHHHHHHHh---CCCcEEEEEechhHHHHHHHH
Q 008512 442 HYRDNIYDIADGGNRV----WA--ITLLGFGRSEKPNIVYTELMWSELLRDFTVEV---VGEPVHLIGNSIGGMFLSTNL 512 (563)
Q Consensus 442 ~~~~~~~~l~~~g~~V----i~--~D~~G~G~S~~~~~~~~~~~~~~~l~~~l~~l---~~~~i~lvGhS~Gg~ia~~~a 512 (563)
.|..+++.|.+.||.. .+ +|+|--- . ..+++...+...|+.. ..++++|+||||||.++..+.
T Consensus 66 ~~~~li~~L~~~GY~~~~~l~~~pYDWR~~~-----~---~~~~~~~~lk~~ie~~~~~~~~kv~li~HSmGgl~~~~fl 137 (389)
T PF02450_consen 66 YFAKLIENLEKLGYDRGKDLFAAPYDWRLSP-----A---ERDEYFTKLKQLIEEAYKKNGKKVVLIAHSMGGLVARYFL 137 (389)
T ss_pred hHHHHHHHHHhcCcccCCEEEEEeechhhch-----h---hHHHHHHHHHHHHHHHHHhcCCcEEEEEeCCCchHHHHHH
Confidence 8889999999988743 22 5776111 1 2334444444444433 368999999999999998887
Q ss_pred hc
Q 008512 513 TR 514 (563)
Q Consensus 513 ~~ 514 (563)
..
T Consensus 138 ~~ 139 (389)
T PF02450_consen 138 QW 139 (389)
T ss_pred Hh
Confidence 64
No 177
>PF03583 LIP: Secretory lipase ; InterPro: IPR005152 This entry represents a family of secreted lipases. Family members include the LIP lipases from Candida albicans, which are expressed and secreted during the infection cycle of these pathogens [].; GO: 0004806 triglyceride lipase activity, 0016042 lipid catabolic process
Probab=95.61 E-value=0.09 Score=53.65 Aligned_cols=68 Identities=19% Similarity=0.052 Sum_probs=42.9
Q ss_pred HHHHHHhhCCCEEEEEcCCCCCCCCCCCcCCCHHHHHHHHHHHH---HHhC---CCcEEEEEechhHHHHHHHHh
Q 008512 445 DNIYDIADGGNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFT---VEVV---GEPVHLIGNSIGGMFLSTNLT 513 (563)
Q Consensus 445 ~~~~~l~~~g~~Vi~~D~~G~G~S~~~~~~~~~~~~~~~l~~~l---~~l~---~~~i~lvGhS~Gg~ia~~~a~ 513 (563)
.++..+.++||.|+++|+.|-|.. -......-....+-+++.. ...+ ..++.++|||.||.-++.++.
T Consensus 17 ~~l~~~L~~GyaVv~pDY~Glg~~-y~~~~~~a~avLD~vRAA~~~~~~~gl~~~~~v~l~GySqGG~Aa~~AA~ 90 (290)
T PF03583_consen 17 PFLAAWLARGYAVVAPDYEGLGTP-YLNGRSEAYAVLDAVRAARNLPPKLGLSPSSRVALWGYSQGGQAALWAAE 90 (290)
T ss_pred HHHHHHHHCCCEEEecCCCCCCCc-ccCcHhHHHHHHHHHHHHHhcccccCCCCCCCEEEEeeCccHHHHHHHHH
Confidence 456777778999999999999972 1111111122233333333 2222 268999999999999877663
No 178
>PLN02633 palmitoyl protein thioesterase family protein
Probab=95.47 E-value=0.13 Score=52.22 Aligned_cols=97 Identities=10% Similarity=0.153 Sum_probs=57.9
Q ss_pred CCeEEEECCCCCChH--HHHHHHHHHhh-CCCEEEEEcCCCCCCCCCCCcCCCHHHHHHHHHHHHHHhC--CCcEEEEEe
Q 008512 427 GPAILLVHGFGAFLE--HYRDNIYDIAD-GGNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFTVEVV--GEPVHLIGN 501 (563)
Q Consensus 427 ~~~vlllHG~~~~~~--~~~~~~~~l~~-~g~~Vi~~D~~G~G~S~~~~~~~~~~~~~~~l~~~l~~l~--~~~i~lvGh 501 (563)
..|+|+.||+|++.. ....+.+.+.+ .|..|.++.. |.+..........+.++.+-+-+.... ..-++++|+
T Consensus 25 ~~P~ViwHG~GD~c~~~g~~~~~~l~~~~~g~~~~~i~i---g~~~~~s~~~~~~~Qve~vce~l~~~~~l~~G~naIGf 101 (314)
T PLN02633 25 SVPFIMLHGIGTQCSDATNANFTQLLTNLSGSPGFCLEI---GNGVGDSWLMPLTQQAEIACEKVKQMKELSQGYNIVGR 101 (314)
T ss_pred CCCeEEecCCCcccCCchHHHHHHHHHhCCCCceEEEEE---CCCccccceeCHHHHHHHHHHHHhhchhhhCcEEEEEE
Confidence 357999999998643 34444444433 2566666543 333222222344455554444443322 145999999
Q ss_pred chhHHHHHHHHhc-cC--cccEEEEEcC
Q 008512 502 SIGGMFLSTNLTR-GK--LYAFLLSVNY 526 (563)
Q Consensus 502 S~Gg~ia~~~a~~-~~--~~~~v~~~~~ 526 (563)
|.||.++..++.+ +. -+..++...+
T Consensus 102 SQGGlflRa~ierc~~~p~V~nlISlgg 129 (314)
T PLN02633 102 SQGNLVARGLIEFCDGGPPVYNYISLAG 129 (314)
T ss_pred ccchHHHHHHHHHCCCCCCcceEEEecC
Confidence 9999999999987 43 3555555444
No 179
>PF00135 COesterase: Carboxylesterase family The prints entry is specific to acetylcholinesterase; InterPro: IPR002018 Higher eukaryotes have many distinct esterases. Among the different types are those which act on carboxylic esters (3.1.1 from EC). Carboxyl-esterases have been classified into three categories (A, B and C) on the basis of differential patterns of inhibition by organophosphates. The sequence of a number of type-B carboxylesterases indicates [, , ] that the majority are evolutionary related. As is the case for lipases and serine proteases, the catalytic apparatus of esterases involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.; PDB: 3B3Q_A 1CLE_B 1GQS_A 2VJD_A 1HBJ_A 2C5G_A 1U65_A 2WG1_A 1FSS_A 3M3D_A ....
Probab=95.04 E-value=0.051 Score=59.98 Aligned_cols=99 Identities=24% Similarity=0.171 Sum_probs=56.9
Q ss_pred CCeEEEECCCC---CCh--HHHHHHHHHHhhCCCEEEEEcCC----CCCCCCCC--C-cCCCHHHHHHHHH---HHHHHh
Q 008512 427 GPAILLVHGFG---AFL--EHYRDNIYDIADGGNRVWAITLL----GFGRSEKP--N-IVYTELMWSELLR---DFTVEV 491 (563)
Q Consensus 427 ~~~vlllHG~~---~~~--~~~~~~~~~l~~~g~~Vi~~D~~----G~G~S~~~--~-~~~~~~~~~~~l~---~~l~~l 491 (563)
-|++|+|||.+ |+. ..+ .-...++..+.-|+++++| |+-.+... . ..+.+.|+...++ +-|..+
T Consensus 125 lPV~v~ihGG~f~~G~~~~~~~-~~~~~~~~~~vivVt~nYRlg~~Gfl~~~~~~~~~gN~Gl~Dq~~AL~WV~~nI~~F 203 (535)
T PF00135_consen 125 LPVMVWIHGGGFMFGSGSFPPY-DGASLAASKDVIVVTINYRLGAFGFLSLGDLDAPSGNYGLLDQRLALKWVQDNIAAF 203 (535)
T ss_dssp EEEEEEE--STTTSSCTTSGGG-HTHHHHHHHTSEEEEE----HHHHH-BSSSTTSHBSTHHHHHHHHHHHHHHHHGGGG
T ss_pred cceEEEeecccccCCCcccccc-cccccccCCCEEEEEecccccccccccccccccCchhhhhhhhHHHHHHHHhhhhhc
Confidence 37899999964 333 233 2334455668999999998 44322211 1 4556666654444 445566
Q ss_pred CC--CcEEEEEechhHHHHHHHHhc---cCcccEEEEEcC
Q 008512 492 VG--EPVHLIGNSIGGMFLSTNLTR---GKLYAFLLSVNY 526 (563)
Q Consensus 492 ~~--~~i~lvGhS~Gg~ia~~~a~~---~~~~~~v~~~~~ 526 (563)
|. .+|.|+|||-||..+..++.. ..+...+++.++
T Consensus 204 GGDp~~VTl~G~SAGa~sv~~~l~sp~~~~LF~raI~~SG 243 (535)
T PF00135_consen 204 GGDPDNVTLFGQSAGAASVSLLLLSPSSKGLFHRAILQSG 243 (535)
T ss_dssp TEEEEEEEEEEETHHHHHHHHHHHGGGGTTSBSEEEEES-
T ss_pred ccCCcceeeeeecccccccceeeecccccccccccccccc
Confidence 65 679999999999999777654 345555555444
No 180
>KOG2183 consensus Prolylcarboxypeptidase (angiotensinase C) [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=94.98 E-value=0.13 Score=53.60 Aligned_cols=101 Identities=17% Similarity=0.082 Sum_probs=68.5
Q ss_pred eCCCCCeEEEECCCCCChHHHH---HHHHHHhh-CCCEEEEEcCCCCCCCCCC--C--------cCCCHHHHHHHHHHHH
Q 008512 423 AGKEGPAILLVHGFGAFLEHYR---DNIYDIAD-GGNRVWAITLLGFGRSEKP--N--------IVYTELMWSELLRDFT 488 (563)
Q Consensus 423 ~g~~~~~vlllHG~~~~~~~~~---~~~~~l~~-~g~~Vi~~D~~G~G~S~~~--~--------~~~~~~~~~~~l~~~l 488 (563)
|...+.+|++.-|.-|+.+.|. .++-.++. .+--++-..+|-+|+|-+= . ...+.++..+|...++
T Consensus 76 w~~g~gPIffYtGNEGdie~Fa~ntGFm~D~Ap~~~AllVFaEHRyYGeS~PFG~~s~k~~~hlgyLtseQALADfA~ll 155 (492)
T KOG2183|consen 76 WKKGEGPIFFYTGNEGDIEWFANNTGFMWDLAPELKALLVFAEHRYYGESLPFGSQSYKDARHLGYLTSEQALADFAELL 155 (492)
T ss_pred ccCCCCceEEEeCCcccHHHHHhccchHHhhhHhhCceEEEeehhccccCCCCcchhccChhhhccccHHHHHHHHHHHH
Confidence 3334467999999998887776 33444433 3556888899999999641 1 1235555566666666
Q ss_pred HHhC------CCcEEEEEechhHHHHHHHHhc-cCcccEEEE
Q 008512 489 VEVV------GEPVHLIGNSIGGMFLSTNLTR-GKLYAFLLS 523 (563)
Q Consensus 489 ~~l~------~~~i~lvGhS~Gg~ia~~~a~~-~~~~~~v~~ 523 (563)
..+. ..+|+.+|-|+||+++..+=.+ |.++...+.
T Consensus 156 ~~lK~~~~a~~~pvIafGGSYGGMLaAWfRlKYPHiv~GAlA 197 (492)
T KOG2183|consen 156 TFLKRDLSAEASPVIAFGGSYGGMLAAWFRLKYPHIVLGALA 197 (492)
T ss_pred HHHhhccccccCcEEEecCchhhHHHHHHHhcChhhhhhhhh
Confidence 6553 2689999999999999988666 776544333
No 181
>cd00741 Lipase Lipase. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation", the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=94.55 E-value=0.095 Score=47.80 Aligned_cols=24 Identities=21% Similarity=0.322 Sum_probs=21.0
Q ss_pred hCCCcEEEEEechhHHHHHHHHhc
Q 008512 491 VVGEPVHLIGNSIGGMFLSTNLTR 514 (563)
Q Consensus 491 l~~~~i~lvGhS~Gg~ia~~~a~~ 514 (563)
....+++++||||||.+|..++..
T Consensus 25 ~p~~~i~v~GHSlGg~lA~l~a~~ 48 (153)
T cd00741 25 YPDYKIHVTGHSLGGALAGLAGLD 48 (153)
T ss_pred CCCCeEEEEEcCHHHHHHHHHHHH
Confidence 367899999999999999988765
No 182
>PF02089 Palm_thioest: Palmitoyl protein thioesterase; InterPro: IPR002472 Neuronal ceroid lipofuscinoses (NCL) represent a group of encephalopathies that occur in 1 in 12,500 children. Mutations in the palmitoyl protein thioesterase gene causing infantile neuronal ceroid lipofuscinosis []. The most common mutation results in intracellular accumulation of the polypeptide and undetectable enzyme activity in the brain. Direct sequencing of cDNAs derived from brain RNA of INCL patients has shown a mis-sense transversion of A to T at nucleotide position 364, which results in substitution of Trp for Arg at position 122 in the protein - Arg 122 is immediately adjacent to a lipase consensus sequence that contains the putative active site Ser of PPT. The occurrence of this and two other independent mutations in the PPT gene strongly suggests that defects in this gene cause INCL.; GO: 0008474 palmitoyl-(protein) hydrolase activity, 0006464 protein modification process; PDB: 3GRO_B 1PJA_A 1EXW_A 1EH5_A 1EI9_A.
Probab=94.53 E-value=0.066 Score=53.73 Aligned_cols=99 Identities=21% Similarity=0.163 Sum_probs=47.5
Q ss_pred CCeEEEECCCCCCh---HHHHHHHHHHhh--CCCEEEEEcCCCCCCCC-CCC-cCCCHHHHHHHHHHHHHHhC--CCcEE
Q 008512 427 GPAILLVHGFGAFL---EHYRDNIYDIAD--GGNRVWAITLLGFGRSE-KPN-IVYTELMWSELLRDFTVEVV--GEPVH 497 (563)
Q Consensus 427 ~~~vlllHG~~~~~---~~~~~~~~~l~~--~g~~Vi~~D~~G~G~S~-~~~-~~~~~~~~~~~l~~~l~~l~--~~~i~ 497 (563)
..|||+.||++++. ..+..+.+.+.+ .|-.|.+++.- -+.++ ... ......+.++.+-+.+.... ..-++
T Consensus 5 ~~PvViwHGmGD~~~~~~~m~~i~~~i~~~~PG~yV~si~ig-~~~~~D~~~s~f~~v~~Qv~~vc~~l~~~p~L~~G~~ 83 (279)
T PF02089_consen 5 PLPVVIWHGMGDSCCNPSSMGSIKELIEEQHPGTYVHSIEIG-NDPSEDVENSFFGNVNDQVEQVCEQLANDPELANGFN 83 (279)
T ss_dssp S--EEEE--TT--S--TTTHHHHHHHHHHHSTT--EEE--SS-SSHHHHHHHHHHSHHHHHHHHHHHHHHH-GGGTT-EE
T ss_pred CCcEEEEEcCccccCChhHHHHHHHHHHHhCCCceEEEEEEC-CCcchhhhhhHHHHHHHHHHHHHHHHhhChhhhccee
Confidence 34899999999753 234433333322 27778877762 22110 000 11233444444555554422 15699
Q ss_pred EEEechhHHHHHHHHhc-c-CcccEEEEEcC
Q 008512 498 LIGNSIGGMFLSTNLTR-G-KLYAFLLSVNY 526 (563)
Q Consensus 498 lvGhS~Gg~ia~~~a~~-~-~~~~~v~~~~~ 526 (563)
++|+|.||.++..++.+ + .-+.-++.+.+
T Consensus 84 ~IGfSQGgl~lRa~vq~c~~~~V~nlISlgg 114 (279)
T PF02089_consen 84 AIGFSQGGLFLRAYVQRCNDPPVHNLISLGG 114 (279)
T ss_dssp EEEETCHHHHHHHHHHH-TSS-EEEEEEES-
T ss_pred eeeeccccHHHHHHHHHCCCCCceeEEEecC
Confidence 99999999999999987 2 23455555444
No 183
>KOG2369 consensus Lecithin:cholesterol acyltransferase (LCAT)/Acyl-ceramide synthase [Lipid transport and metabolism]
Probab=94.47 E-value=0.06 Score=57.20 Aligned_cols=72 Identities=15% Similarity=0.095 Sum_probs=48.3
Q ss_pred HHHHHHHHHHhhCCCE----E--EEEcCCC-CCCCCCCCcCCCHHHHHHHHHHHHHHhCCCcEEEEEechhHHHHHHHHh
Q 008512 441 EHYRDNIYDIADGGNR----V--WAITLLG-FGRSEKPNIVYTELMWSELLRDFTVEVVGEPVHLIGNSIGGMFLSTNLT 513 (563)
Q Consensus 441 ~~~~~~~~~l~~~g~~----V--i~~D~~G-~G~S~~~~~~~~~~~~~~~l~~~l~~l~~~~i~lvGhS~Gg~ia~~~a~ 513 (563)
..|..+++.|..-||. + ..+|+|- +-.+ ...+-.+..+...++.....-+.+|++|++||||+.+.+.+..
T Consensus 124 ~~w~~~i~~lv~~GYe~~~~l~ga~YDwRls~~~~--e~rd~yl~kLK~~iE~~~~~~G~kkVvlisHSMG~l~~lyFl~ 201 (473)
T KOG2369|consen 124 WYWHELIENLVGIGYERGKTLFGAPYDWRLSYHNS--EERDQYLSKLKKKIETMYKLNGGKKVVLISHSMGGLYVLYFLK 201 (473)
T ss_pred HHHHHHHHHHHhhCcccCceeeccccchhhccCCh--hHHHHHHHHHHHHHHHHHHHcCCCceEEEecCCccHHHHHHHh
Confidence 6788999999998887 3 3467762 1111 1112234455555555555556699999999999999998876
Q ss_pred c
Q 008512 514 R 514 (563)
Q Consensus 514 ~ 514 (563)
.
T Consensus 202 w 202 (473)
T KOG2369|consen 202 W 202 (473)
T ss_pred c
Confidence 4
No 184
>PLN02517 phosphatidylcholine-sterol O-acyltransferase
Probab=94.18 E-value=0.097 Score=57.43 Aligned_cols=70 Identities=11% Similarity=0.008 Sum_probs=44.3
Q ss_pred HHHHHHHHHhhCCCEEEEEcCCCCCCCCCCC--cCCCHHHHHHHHHHHHHH----hCCCcEEEEEechhHHHHHHHHh
Q 008512 442 HYRDNIYDIADGGNRVWAITLLGFGRSEKPN--IVYTELMWSELLRDFTVE----VVGEPVHLIGNSIGGMFLSTNLT 513 (563)
Q Consensus 442 ~~~~~~~~l~~~g~~Vi~~D~~G~G~S~~~~--~~~~~~~~~~~l~~~l~~----l~~~~i~lvGhS~Gg~ia~~~a~ 513 (563)
.|..+++.|+..||. --|+.|...-.+-. .....+++-..+..+|+. -+.++++|+||||||.+++.++.
T Consensus 157 vw~kLIe~L~~iGY~--~~nL~gAPYDWRls~~~le~rd~YF~rLK~lIE~ay~~nggkKVVLV~HSMGglv~lyFL~ 232 (642)
T PLN02517 157 VWAVLIANLARIGYE--EKNMYMAAYDWRLSFQNTEVRDQTLSRLKSNIELMVATNGGKKVVVVPHSMGVLYFLHFMK 232 (642)
T ss_pred eHHHHHHHHHHcCCC--CCceeecccccccCccchhhhhHHHHHHHHHHHHHHHHcCCCeEEEEEeCCchHHHHHHHH
Confidence 668999999999996 45555544332211 011123333334444432 34689999999999999988764
No 185
>COG3946 VirJ Type IV secretory pathway, VirJ component [Intracellular trafficking and secretion]
Probab=93.71 E-value=0.24 Score=51.59 Aligned_cols=79 Identities=20% Similarity=0.138 Sum_probs=62.3
Q ss_pred CCeEEEECCCCCChHHHHHHHHHHhhCCCEEEEEc-CCCCCCCCCCCcCCCHHHHHHHHHHHHHHh----CCCcEEEEEe
Q 008512 427 GPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAIT-LLGFGRSEKPNIVYTELMWSELLRDFTVEV----VGEPVHLIGN 501 (563)
Q Consensus 427 ~~~vlllHG~~~~~~~~~~~~~~l~~~g~~Vi~~D-~~G~G~S~~~~~~~~~~~~~~~l~~~l~~l----~~~~i~lvGh 501 (563)
...-||+.|-+|-.+.=..+.+.|.++|+.|+.+| +|-|- | ..+.++.++|+..++..+ +..++.|+|+
T Consensus 260 d~~av~~SGDGGWr~lDk~v~~~l~~~gvpVvGvdsLRYfW-~-----~rtPe~~a~Dl~r~i~~y~~~w~~~~~~liGy 333 (456)
T COG3946 260 DTVAVFYSGDGGWRDLDKEVAEALQKQGVPVVGVDSLRYFW-S-----ERTPEQIAADLSRLIRFYARRWGAKRVLLIGY 333 (456)
T ss_pred ceEEEEEecCCchhhhhHHHHHHHHHCCCceeeeehhhhhh-c-----cCCHHHHHHHHHHHHHHHHHhhCcceEEEEee
Confidence 45678888988887777789999999999999998 45443 3 346677888888888665 5689999999
Q ss_pred chhHHHHHHH
Q 008512 502 SIGGMFLSTN 511 (563)
Q Consensus 502 S~Gg~ia~~~ 511 (563)
|+|+-+.-..
T Consensus 334 SfGADvlP~~ 343 (456)
T COG3946 334 SFGADVLPFA 343 (456)
T ss_pred cccchhhHHH
Confidence 9999876443
No 186
>cd00519 Lipase_3 Lipase (class 3). Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=93.67 E-value=0.18 Score=49.32 Aligned_cols=28 Identities=18% Similarity=0.164 Sum_probs=22.0
Q ss_pred HHHHhCCCcEEEEEechhHHHHHHHHhc
Q 008512 487 FTVEVVGEPVHLIGNSIGGMFLSTNLTR 514 (563)
Q Consensus 487 ~l~~l~~~~i~lvGhS~Gg~ia~~~a~~ 514 (563)
.+++....++++.||||||.+|..++..
T Consensus 121 ~~~~~p~~~i~vtGHSLGGaiA~l~a~~ 148 (229)
T cd00519 121 ALKQYPDYKIIVTGHSLGGALASLLALD 148 (229)
T ss_pred HHhhCCCceEEEEccCHHHHHHHHHHHH
Confidence 3344456789999999999999887764
No 187
>KOG3967 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.43 E-value=0.45 Score=45.39 Aligned_cols=88 Identities=18% Similarity=0.315 Sum_probs=53.4
Q ss_pred CCeEEEECCCCCC-hHHHH---------------HHHHHHhhCCCEEEEEcCC---CCCCCCC-CC-cCCCHHHHHHH-H
Q 008512 427 GPAILLVHGFGAF-LEHYR---------------DNIYDIADGGNRVWAITLL---GFGRSEK-PN-IVYTELMWSEL-L 484 (563)
Q Consensus 427 ~~~vlllHG~~~~-~~~~~---------------~~~~~l~~~g~~Vi~~D~~---G~G~S~~-~~-~~~~~~~~~~~-l 484 (563)
...+|||||-|-- ...|. ++++.....||.|++.+.- -+-.+.. +. ...+..+.+.. -
T Consensus 101 ~kLlVLIHGSGvVrAGQWARrLIIN~~Ld~GTQiPyi~rAv~~Gygviv~N~N~~~kfye~k~np~kyirt~veh~~yvw 180 (297)
T KOG3967|consen 101 QKLLVLIHGSGVVRAGQWARRLIINEDLDSGTQIPYIKRAVAEGYGVIVLNPNRERKFYEKKRNPQKYIRTPVEHAKYVW 180 (297)
T ss_pred cceEEEEecCceEecchHhhhhhhccccccCCcChHHHHHHHcCCcEEEeCCchhhhhhhcccCcchhccchHHHHHHHH
Confidence 4479999997632 22222 3455555679999998753 1222211 21 11233333332 2
Q ss_pred HHHHHHhCCCcEEEEEechhHHHHHHHHhc
Q 008512 485 RDFTVEVVGEPVHLIGNSIGGMFLSTNLTR 514 (563)
Q Consensus 485 ~~~l~~l~~~~i~lvGhS~Gg~ia~~~a~~ 514 (563)
..++.......++++.||.||...+.++.+
T Consensus 181 ~~~v~pa~~~sv~vvahsyGG~~t~~l~~~ 210 (297)
T KOG3967|consen 181 KNIVLPAKAESVFVVAHSYGGSLTLDLVER 210 (297)
T ss_pred HHHhcccCcceEEEEEeccCChhHHHHHHh
Confidence 344555566889999999999999999886
No 188
>KOG3101 consensus Esterase D [General function prediction only]
Probab=93.38 E-value=0.036 Score=52.61 Aligned_cols=101 Identities=18% Similarity=0.243 Sum_probs=57.9
Q ss_pred CCeEEEECCCCCChHHHHH---HHHHHhhCCCEEEEEc--CCCC---CCCCCCC--------cCCCHHHHHH-------H
Q 008512 427 GPAILLVHGFGAFLEHYRD---NIYDIADGGNRVWAIT--LLGF---GRSEKPN--------IVYTELMWSE-------L 483 (563)
Q Consensus 427 ~~~vlllHG~~~~~~~~~~---~~~~l~~~g~~Vi~~D--~~G~---G~S~~~~--------~~~~~~~~~~-------~ 483 (563)
-|++.++.|+..+.+.|.. +-...+..|+-|+.+| .||. |.++.=+ .+.+.+-|+. .
T Consensus 44 ~P~lf~LSGLTCT~~Nfi~Ksg~qq~As~hgl~vV~PDTSPRG~~v~g~~eswDFG~GAGFYvnAt~epw~~~yrMYdYv 123 (283)
T KOG3101|consen 44 CPVLFYLSGLTCTHENFIEKSGFQQQASKHGLAVVAPDTSPRGVEVAGDDESWDFGQGAGFYVNATQEPWAKHYRMYDYV 123 (283)
T ss_pred CceEEEecCCcccchhhHhhhhHHHhHhhcCeEEECCCCCCCccccCCCcccccccCCceeEEecccchHhhhhhHHHHH
Confidence 4689999999988877652 2233455689999998 4554 3222100 0111121211 1
Q ss_pred HHHHHHHhC-------CCcEEEEEechhHHHHHHHHhc-cCcccEEEEEcCc
Q 008512 484 LRDFTVEVV-------GEPVHLIGNSIGGMFLSTNLTR-GKLYAFLLSVNYL 527 (563)
Q Consensus 484 l~~~l~~l~-------~~~i~lvGhS~Gg~ia~~~a~~-~~~~~~v~~~~~~ 527 (563)
+.++.+.+. ..++.|.||||||+=|+..+.+ +...+.+-...++
T Consensus 124 ~kELp~~l~~~~~pld~~k~~IfGHSMGGhGAl~~~Lkn~~kykSvSAFAPI 175 (283)
T KOG3101|consen 124 VKELPQLLNSANVPLDPLKVGIFGHSMGGHGALTIYLKNPSKYKSVSAFAPI 175 (283)
T ss_pred HHHHHHHhccccccccchhcceeccccCCCceEEEEEcCcccccceeccccc
Confidence 223333222 3579999999999988776655 5555554444333
No 189
>PF11144 DUF2920: Protein of unknown function (DUF2920); InterPro: IPR022605 This bacterial family of proteins has no known function.
Probab=93.25 E-value=0.59 Score=49.23 Aligned_cols=36 Identities=19% Similarity=0.155 Sum_probs=30.1
Q ss_pred CcEEEEEechhHHHHHHHHhc-cCcccEEEEEcCcCC
Q 008512 494 EPVHLIGNSIGGMFLSTNLTR-GKLYAFLLSVNYLLS 529 (563)
Q Consensus 494 ~~i~lvGhS~Gg~ia~~~a~~-~~~~~~v~~~~~~~~ 529 (563)
-|++++|+|.||+++...|+- |..+..++--++...
T Consensus 184 lp~I~~G~s~G~yla~l~~k~aP~~~~~~iDns~~~~ 220 (403)
T PF11144_consen 184 LPKIYIGSSHGGYLAHLCAKIAPWLFDGVIDNSSYAL 220 (403)
T ss_pred CcEEEEecCcHHHHHHHHHhhCccceeEEEecCcccc
Confidence 389999999999999999886 888888877666544
No 190
>PLN02454 triacylglycerol lipase
Probab=92.98 E-value=0.3 Score=51.70 Aligned_cols=60 Identities=10% Similarity=0.064 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHhCCCc--EEEEEechhHHHHHHHHhc---c-----C-cccEEEEEcCcCChHHHHHHhhh
Q 008512 480 WSELLRDFTVEVVGEP--VHLIGNSIGGMFLSTNLTR---G-----K-LYAFLLSVNYLLSRSIICRLFCC 539 (563)
Q Consensus 480 ~~~~l~~~l~~l~~~~--i~lvGhS~Gg~ia~~~a~~---~-----~-~~~~v~~~~~~~~~~~~~~~~~~ 539 (563)
+...|..+++.....+ |++.||||||.+|+.+|.. . . .+..+.+..+-.-...+.+.+..
T Consensus 212 vl~~V~~l~~~Yp~~~~sI~vTGHSLGGALAtLaA~di~~~g~~~~~~~V~~~TFGsPRVGN~~Fa~~~~~ 282 (414)
T PLN02454 212 LLAKIKELLERYKDEKLSIVLTGHSLGASLATLAAFDIVENGVSGADIPVTAIVFGSPQVGNKEFNDRFKE 282 (414)
T ss_pred HHHHHHHHHHhCCCCCceEEEEecCHHHHHHHHHHHHHHHhcccccCCceEEEEeCCCcccCHHHHHHHHh
Confidence 3444555555555544 9999999999999998753 1 1 23345555554444555555543
No 191
>COG0627 Predicted esterase [General function prediction only]
Probab=92.90 E-value=0.26 Score=50.79 Aligned_cols=37 Identities=22% Similarity=0.152 Sum_probs=31.2
Q ss_pred cEEEEEechhHHHHHHHHhc-cCcccEEEEEcCcCChH
Q 008512 495 PVHLIGNSIGGMFLSTNLTR-GKLYAFLLSVNYLLSRS 531 (563)
Q Consensus 495 ~i~lvGhS~Gg~ia~~~a~~-~~~~~~v~~~~~~~~~~ 531 (563)
...++||||||.=|+.+|.+ |++.+.+...+++...+
T Consensus 153 ~~aI~G~SMGG~GAl~lA~~~pd~f~~~sS~Sg~~~~s 190 (316)
T COG0627 153 GRAIAGHSMGGYGALKLALKHPDRFKSASSFSGILSPS 190 (316)
T ss_pred CceeEEEeccchhhhhhhhhCcchhceecccccccccc
Confidence 79999999999999999987 68888887777766554
No 192
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=92.22 E-value=1.5 Score=42.89 Aligned_cols=119 Identities=13% Similarity=0.115 Sum_probs=61.6
Q ss_pred EEEEcCCCCCcCCHHHHHHHhCCCeEEEEEECCc-ccc--cCCHhHHHHHHHHHHHHHHHHHhcCCcEEEEEc-------
Q 008512 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHR-ILS--RYSNEMLELVIFALEDLRKSLKEQGSDLMIRFG------- 117 (563)
Q Consensus 48 l~WfrrDLRl~DN~aL~~A~~~~~vl~vfi~dp~-~~~--~~~~~r~~Fl~~sL~~L~~~L~~~g~~L~v~~g------- 117 (563)
|.|.=-|.=..++++|.. - . +-..|+..... ... .+...+..+++.+++...+.|++.|..+..+.-
T Consensus 1 L~lIlgdQL~~~~~~l~~-~-~-~~~~v~mvE~~~~~~~~~~HkqKl~l~~saMRhfa~~L~~~G~~V~Y~~~~~~~~~~ 77 (224)
T PF04244_consen 1 LRLILGDQLFEDHPALRD-D-P-ADDRVLMVEVPEEFTYVPHHKQKLVLFFSAMRHFADELRAKGFRVHYIELDDPENTQ 77 (224)
T ss_dssp EEE--TT---TT-HHHHT---T-TT-EEEEE--HHHHHSS---HHHHHHHHHHHHHHHHHHHHTT--EEEE-TT-TT--S
T ss_pred CeEeccCCCCCccccccc-C-C-CCCEEEEEEchHHhCcCcccHHHHHHHHHHHHHHHHHHHhCCCEEEEEeCCCccccc
Confidence 456666777778888866 2 2 22233433332 222 235668889999999999999999999887753
Q ss_pred ChHHHHHHHHHHhCccEEEEccccChhHHHHHHHHHHHHHhcCCCCCCceeeeeCcccc
Q 008512 118 RVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDGKPKICLWQTPFY 176 (563)
Q Consensus 118 ~~~~~l~~l~~~~~a~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~~~~~~~~~L~ 176 (563)
+-.+.|.+++++++++.|.+.+. .+.+..+.+++.+.+.|| ++..+.+...+
T Consensus 78 s~~~~L~~~~~~~~~~~~~~~~P---~d~~l~~~l~~~~~~~~i----~~~~~~~~~Fl 129 (224)
T PF04244_consen 78 SFEDALARALKQHGIDRLHVMEP---GDYRLEQRLESLAQQLGI----PLEVLEDPHFL 129 (224)
T ss_dssp SHHHHHHHHHHHH----EEEE-----S-HHHHHHHHH----SSS-----EEEE--TTSS
T ss_pred cHHHHHHHHHHHcCCCEEEEECC---CCHHHHHHHHhhhcccCC----ceEEeCCCCcc
Confidence 33678888999999999977654 455555567776666665 66666554443
No 193
>COG2819 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=92.17 E-value=0.3 Score=48.48 Aligned_cols=53 Identities=23% Similarity=0.258 Sum_probs=38.0
Q ss_pred HHHHHHHHHH-h--CCCcEEEEEechhHHHHHHHHhc-cCcccEEEEEcCcCChHHH
Q 008512 481 SELLRDFTVE-V--VGEPVHLIGNSIGGMFLSTNLTR-GKLYAFLLSVNYLLSRSII 533 (563)
Q Consensus 481 ~~~l~~~l~~-l--~~~~i~lvGhS~Gg~ia~~~a~~-~~~~~~v~~~~~~~~~~~~ 533 (563)
.+.+.-++++ + ..++-.|+|||+||.+++..... |+......++++..-+...
T Consensus 121 ~~~lkP~Ie~~y~~~~~~~~i~GhSlGGLfvl~aLL~~p~~F~~y~~~SPSlWw~n~ 177 (264)
T COG2819 121 TEQLKPFIEARYRTNSERTAIIGHSLGGLFVLFALLTYPDCFGRYGLISPSLWWHNE 177 (264)
T ss_pred HHhhHHHHhcccccCcccceeeeecchhHHHHHHHhcCcchhceeeeecchhhhCCH
Confidence 3444445554 2 23679999999999999998876 7888888888776644333
No 194
>PLN02571 triacylglycerol lipase
Probab=92.13 E-value=0.19 Score=53.31 Aligned_cols=37 Identities=14% Similarity=0.169 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHhCCC--cEEEEEechhHHHHHHHHhc
Q 008512 478 LMWSELLRDFTVEVVGE--PVHLIGNSIGGMFLSTNLTR 514 (563)
Q Consensus 478 ~~~~~~l~~~l~~l~~~--~i~lvGhS~Gg~ia~~~a~~ 514 (563)
+++...+..+++..... +|++.||||||.+|+..|.+
T Consensus 208 ~qvl~eV~~L~~~y~~e~~sI~VTGHSLGGALAtLaA~d 246 (413)
T PLN02571 208 DQVLNEVGRLVEKYKDEEISITICGHSLGAALATLNAVD 246 (413)
T ss_pred HHHHHHHHHHHHhcCcccccEEEeccchHHHHHHHHHHH
Confidence 45666677777766543 68999999999999888753
No 195
>KOG4372 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=92.11 E-value=0.19 Score=52.46 Aligned_cols=86 Identities=13% Similarity=0.196 Sum_probs=50.9
Q ss_pred CCeEEEECCCCC-ChHHHHHHHHHHhhC--CCEEEEEcCCCCCCCCCCCcCCCHHHHHHHHHHHHHHhCCCcEEEEEech
Q 008512 427 GPAILLVHGFGA-FLEHYRDNIYDIADG--GNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFTVEVVGEPVHLIGNSI 503 (563)
Q Consensus 427 ~~~vlllHG~~~-~~~~~~~~~~~l~~~--g~~Vi~~D~~G~G~S~~~~~~~~~~~~~~~l~~~l~~l~~~~i~lvGhS~ 503 (563)
+-.||+.||+-+ +...|..-+...... +..++.....+.-.........=-...++.+.+.+....+.+|..+|||+
T Consensus 80 ~HLvVlthGi~~~~~~~~~~~~~~~~kk~p~~~iv~~g~~~~~~~T~~Gv~~lG~Rla~~~~e~~~~~si~kISfvghSL 159 (405)
T KOG4372|consen 80 KHLVVLTHGLHGADMEYWKEKIEQMTKKMPDKLIVVRGKMNNMCQTFDGVDVLGERLAEEVKETLYDYSIEKISFVGHSL 159 (405)
T ss_pred ceEEEeccccccccHHHHHHHHHhhhcCCCcceEeeeccccchhhccccceeeecccHHHHhhhhhccccceeeeeeeec
Confidence 347999999977 677777777766653 33333333332211111111111123445555555555679999999999
Q ss_pred hHHHHHHHH
Q 008512 504 GGMFLSTNL 512 (563)
Q Consensus 504 Gg~ia~~~a 512 (563)
||.++..+.
T Consensus 160 GGLvar~AI 168 (405)
T KOG4372|consen 160 GGLVARYAI 168 (405)
T ss_pred CCeeeeEEE
Confidence 999886653
No 196
>PLN00413 triacylglycerol lipase
Probab=91.43 E-value=0.29 Score=52.47 Aligned_cols=36 Identities=17% Similarity=0.139 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEEechhHHHHHHHHh
Q 008512 478 LMWSELLRDFTVEVVGEPVHLIGNSIGGMFLSTNLT 513 (563)
Q Consensus 478 ~~~~~~l~~~l~~l~~~~i~lvGhS~Gg~ia~~~a~ 513 (563)
.++.+.+..+++.....++++.|||+||.+|..++.
T Consensus 268 y~i~~~Lk~ll~~~p~~kliVTGHSLGGALAtLaA~ 303 (479)
T PLN00413 268 YTILRHLKEIFDQNPTSKFILSGHSLGGALAILFTA 303 (479)
T ss_pred HHHHHHHHHHHHHCCCCeEEEEecCHHHHHHHHHHH
Confidence 356667777887777789999999999999988874
No 197
>PLN02162 triacylglycerol lipase
Probab=91.09 E-value=0.32 Score=52.05 Aligned_cols=37 Identities=22% Similarity=0.207 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEEechhHHHHHHHHh
Q 008512 477 ELMWSELLRDFTVEVVGEPVHLIGNSIGGMFLSTNLT 513 (563)
Q Consensus 477 ~~~~~~~l~~~l~~l~~~~i~lvGhS~Gg~ia~~~a~ 513 (563)
...+.+.+.+++.+....++++.|||+||.+|+.++.
T Consensus 261 y~~I~~~L~~lL~k~p~~kliVTGHSLGGALAtLaAa 297 (475)
T PLN02162 261 YYTIRQMLRDKLARNKNLKYILTGHSLGGALAALFPA 297 (475)
T ss_pred HHHHHHHHHHHHHhCCCceEEEEecChHHHHHHHHHH
Confidence 3445566666676666788999999999999988754
No 198
>PLN02408 phospholipase A1
Probab=90.90 E-value=0.31 Score=50.89 Aligned_cols=60 Identities=12% Similarity=0.110 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHhCCC--cEEEEEechhHHHHHHHHhc-----cC--cccEEEEEcCcCChHHHHHHhh
Q 008512 479 MWSELLRDFTVEVVGE--PVHLIGNSIGGMFLSTNLTR-----GK--LYAFLLSVNYLLSRSIICRLFC 538 (563)
Q Consensus 479 ~~~~~l~~~l~~l~~~--~i~lvGhS~Gg~ia~~~a~~-----~~--~~~~v~~~~~~~~~~~~~~~~~ 538 (563)
++.+.+..+++..+.. +|++.|||+||.+|+.+|.. .. .+..+....+-.-...+.+.+.
T Consensus 183 qVl~eI~~ll~~y~~~~~sI~vTGHSLGGALAtLaA~dl~~~~~~~~~V~v~tFGsPRVGN~~Fa~~~~ 251 (365)
T PLN02408 183 MVREEIARLLQSYGDEPLSLTITGHSLGAALATLTAYDIKTTFKRAPMVTVISFGGPRVGNRSFRRQLE 251 (365)
T ss_pred HHHHHHHHHHHhcCCCCceEEEeccchHHHHHHHHHHHHHHhcCCCCceEEEEcCCCCcccHHHHHHHH
Confidence 3445566666666543 59999999999999988754 11 2333444444444455555553
No 199
>PF11187 DUF2974: Protein of unknown function (DUF2974); InterPro: IPR024499 This family of proteins has no known function.
Probab=90.83 E-value=0.65 Score=45.46 Aligned_cols=48 Identities=13% Similarity=0.056 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHhCCCcEEEEEechhHHHHHHHHhc-----cCcccEEEEEcCcC
Q 008512 480 WSELLRDFTVEVVGEPVHLIGNSIGGMFLSTNLTR-----GKLYAFLLSVNYLL 528 (563)
Q Consensus 480 ~~~~l~~~l~~l~~~~i~lvGhS~Gg~ia~~~a~~-----~~~~~~v~~~~~~~ 528 (563)
..+.+..+++..+ +++.+.|||.||.+|..++.. .+.+..+...++..
T Consensus 71 A~~yl~~~~~~~~-~~i~v~GHSkGGnLA~yaa~~~~~~~~~rI~~vy~fDgPG 123 (224)
T PF11187_consen 71 ALAYLKKIAKKYP-GKIYVTGHSKGGNLAQYAAANCDDEIQDRISKVYSFDGPG 123 (224)
T ss_pred HHHHHHHHHHhCC-CCEEEEEechhhHHHHHHHHHccHHHhhheeEEEEeeCCC
Confidence 3444555555554 459999999999999998875 23455566555433
No 200
>PLN02934 triacylglycerol lipase
Probab=90.01 E-value=0.43 Score=51.60 Aligned_cols=36 Identities=19% Similarity=0.186 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEEechhHHHHHHHHh
Q 008512 478 LMWSELLRDFTVEVVGEPVHLIGNSIGGMFLSTNLT 513 (563)
Q Consensus 478 ~~~~~~l~~~l~~l~~~~i~lvGhS~Gg~ia~~~a~ 513 (563)
+.+...+..++++....++++.|||+||.+|..++.
T Consensus 305 ~~v~~~lk~ll~~~p~~kIvVTGHSLGGALAtLaA~ 340 (515)
T PLN02934 305 YAVRSKLKSLLKEHKNAKFVVTGHSLGGALAILFPT 340 (515)
T ss_pred HHHHHHHHHHHHHCCCCeEEEeccccHHHHHHHHHH
Confidence 345666777777777789999999999999988863
No 201
>KOG2182 consensus Hydrolytic enzymes of the alpha/beta hydrolase fold [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=89.77 E-value=1.5 Score=47.05 Aligned_cols=102 Identities=16% Similarity=0.123 Sum_probs=69.9
Q ss_pred CCCCeEEEECCCCCChHHHH-----HHHHHHhhCCCEEEEEcCCCCCCCCCCC-------cCCCHHHHHHHHHHHHHHhC
Q 008512 425 KEGPAILLVHGFGAFLEHYR-----DNIYDIADGGNRVWAITLLGFGRSEKPN-------IVYTELMWSELLRDFTVEVV 492 (563)
Q Consensus 425 ~~~~~vlllHG~~~~~~~~~-----~~~~~l~~~g~~Vi~~D~~G~G~S~~~~-------~~~~~~~~~~~l~~~l~~l~ 492 (563)
+++|..|+|-|=+.-...|. .++....+.|-.|+...+|-+|.|.... ...+..+...|+.++|+++.
T Consensus 84 ~~gPiFLmIGGEgp~~~~wv~~~~~~~~~~AkkfgA~v~~lEHRFYG~S~P~~~~st~nlk~LSs~QALaDla~fI~~~n 163 (514)
T KOG2182|consen 84 PGGPIFLMIGGEGPESDKWVGNENLTWLQWAKKFGATVFQLEHRFYGQSSPIGDLSTSNLKYLSSLQALADLAEFIKAMN 163 (514)
T ss_pred CCCceEEEEcCCCCCCCCccccCcchHHHHHHHhCCeeEEeeeeccccCCCCCCCcccchhhhhHHHHHHHHHHHHHHHH
Confidence 35777888877554332331 2233334457799999999999985432 12467778888888888764
Q ss_pred C-------CcEEEEEechhHHHHHHHHhc-cCcccEEEEEcC
Q 008512 493 G-------EPVHLIGNSIGGMFLSTNLTR-GKLYAFLLSVNY 526 (563)
Q Consensus 493 ~-------~~i~lvGhS~Gg~ia~~~a~~-~~~~~~v~~~~~ 526 (563)
. .|.+.+|-|+-|.++.++=.. |+++.+.+.+++
T Consensus 164 ~k~n~~~~~~WitFGgSYsGsLsAW~R~~yPel~~GsvASSa 205 (514)
T KOG2182|consen 164 AKFNFSDDSKWITFGGSYSGSLSAWFREKYPELTVGSVASSA 205 (514)
T ss_pred hhcCCCCCCCeEEECCCchhHHHHHHHHhCchhheeeccccc
Confidence 2 389999999999999888665 886655444433
No 202
>PF11288 DUF3089: Protein of unknown function (DUF3089); InterPro: IPR021440 This family of proteins has no known function.
Probab=89.43 E-value=0.69 Score=44.48 Aligned_cols=65 Identities=15% Similarity=0.050 Sum_probs=44.0
Q ss_pred HHhhCCCEEEEEcCCCCCCCCC-----CC----cCCCHHHHHHHHHHHHHHhCC-CcEEEEEechhHHHHHHHHhc
Q 008512 449 DIADGGNRVWAITLLGFGRSEK-----PN----IVYTELMWSELLRDFTVEVVG-EPVHLIGNSIGGMFLSTNLTR 514 (563)
Q Consensus 449 ~l~~~g~~Vi~~D~~G~G~S~~-----~~----~~~~~~~~~~~l~~~l~~l~~-~~i~lvGhS~Gg~ia~~~a~~ 514 (563)
.|.. -.+|+++=+|-.....- .. ......|..+....++++... .+++|+|||.|+.++..++++
T Consensus 41 ~F~~-~~~vfAP~YRQatl~~~~~~~~~~~~~a~~~ay~DV~~AF~~yL~~~n~GRPfILaGHSQGs~~l~~LL~e 115 (207)
T PF11288_consen 41 AFNG-VCNVFAPRYRQATLYAFLDTDREDAEKAFDLAYSDVRAAFDYYLANYNNGRPFILAGHSQGSMHLLRLLKE 115 (207)
T ss_pred hhhc-CCccccChhhcchhhhhhccCcchhHHHHHhhHHHHHHHHHHHHHhcCCCCCEEEEEeChHHHHHHHHHHH
Confidence 3444 36888887775422111 11 123456677777777887754 689999999999999999864
No 203
>PLN02324 triacylglycerol lipase
Probab=89.35 E-value=0.48 Score=50.17 Aligned_cols=36 Identities=11% Similarity=0.128 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHhCC--CcEEEEEechhHHHHHHHHhc
Q 008512 479 MWSELLRDFTVEVVG--EPVHLIGNSIGGMFLSTNLTR 514 (563)
Q Consensus 479 ~~~~~l~~~l~~l~~--~~i~lvGhS~Gg~ia~~~a~~ 514 (563)
++...|..+++.... .+|++.|||+||.+|+..|..
T Consensus 198 qVl~eV~~L~~~Yp~e~~sItvTGHSLGGALAtLaA~d 235 (415)
T PLN02324 198 QVQGELKRLLELYKNEEISITFTGHSLGAVMSVLSAAD 235 (415)
T ss_pred HHHHHHHHHHHHCCCCCceEEEecCcHHHHHHHHHHHH
Confidence 345556667766654 369999999999999988753
No 204
>PF04301 DUF452: Protein of unknown function (DUF452); InterPro: IPR007398 This is a family of uncharacterised proteins.
Probab=89.11 E-value=1.5 Score=42.54 Aligned_cols=75 Identities=13% Similarity=0.018 Sum_probs=50.2
Q ss_pred CCeEEEECCCCCChHHHHHHHHHHhhCCCEE-EEEcCCCCCCCCCCCcCCCHHHHHHHHHHHHHHhCCCcEEEEEechhH
Q 008512 427 GPAILLVHGFGAFLEHYRDNIYDIADGGNRV-WAITLLGFGRSEKPNIVYTELMWSELLRDFTVEVVGEPVHLIGNSIGG 505 (563)
Q Consensus 427 ~~~vlllHG~~~~~~~~~~~~~~l~~~g~~V-i~~D~~G~G~S~~~~~~~~~~~~~~~l~~~l~~l~~~~i~lvGhS~Gg 505 (563)
+..||++.||+.+...+..+. ...++.| +++|++..- ++. + + -+.+.|.|+|+|||-
T Consensus 11 ~~LilfF~GWg~d~~~f~hL~---~~~~~D~l~~yDYr~l~----------~d~---~---~---~~y~~i~lvAWSmGV 68 (213)
T PF04301_consen 11 KELILFFAGWGMDPSPFSHLI---LPENYDVLICYDYRDLD----------FDF---D---L---SGYREIYLVAWSMGV 68 (213)
T ss_pred CeEEEEEecCCCChHHhhhcc---CCCCccEEEEecCcccc----------ccc---c---c---ccCceEEEEEEeHHH
Confidence 468999999999988876542 1235666 556887221 110 1 1 135899999999999
Q ss_pred HHHHHHHhccCcccEEEE
Q 008512 506 MFLSTNLTRGKLYAFLLS 523 (563)
Q Consensus 506 ~ia~~~a~~~~~~~~v~~ 523 (563)
.+|..+....++..++.+
T Consensus 69 w~A~~~l~~~~~~~aiAI 86 (213)
T PF04301_consen 69 WAANRVLQGIPFKRAIAI 86 (213)
T ss_pred HHHHHHhccCCcceeEEE
Confidence 999887766555555444
No 205
>PF07082 DUF1350: Protein of unknown function (DUF1350); InterPro: IPR010765 This family consists of several hypothetical proteins from both cyanobacteria and plants. Members of this family are typically around 250 residues in length. The function of this family is unknown but the species distribution indicates that the family may be involved in photosynthesis.
Probab=88.84 E-value=3.1 Score=41.06 Aligned_cols=77 Identities=21% Similarity=0.169 Sum_probs=46.1
Q ss_pred eEEEECCC--CC-ChHHHHHHHHHHhhCCCEEEEEcCCCCCCCCCCCcCCCHHHHHH----HHHHHHHHh----CC----
Q 008512 429 AILLVHGF--GA-FLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNIVYTELMWSE----LLRDFTVEV----VG---- 493 (563)
Q Consensus 429 ~vlllHG~--~~-~~~~~~~~~~~l~~~g~~Vi~~D~~G~G~S~~~~~~~~~~~~~~----~l~~~l~~l----~~---- 493 (563)
.|-|+-|. +. ..-.|..+++.|+++||.|++.=+. . .++....+. .....++.+ +.
T Consensus 19 vihFiGGaf~ga~P~itYr~lLe~La~~Gy~ViAtPy~-~--------tfDH~~~A~~~~~~f~~~~~~L~~~~~~~~~~ 89 (250)
T PF07082_consen 19 VIHFIGGAFVGAAPQITYRYLLERLADRGYAVIATPYV-V--------TFDHQAIAREVWERFERCLRALQKRGGLDPAY 89 (250)
T ss_pred EEEEcCcceeccCcHHHHHHHHHHHHhCCcEEEEEecC-C--------CCcHHHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 45555553 22 2457889999999999999996553 1 122111111 112222222 11
Q ss_pred CcEEEEEechhHHHHHHHHhc
Q 008512 494 EPVHLIGNSIGGMFLSTNLTR 514 (563)
Q Consensus 494 ~~i~lvGhS~Gg~ia~~~a~~ 514 (563)
-+++=+|||||+-+-+.+...
T Consensus 90 lP~~~vGHSlGcklhlLi~s~ 110 (250)
T PF07082_consen 90 LPVYGVGHSLGCKLHLLIGSL 110 (250)
T ss_pred CCeeeeecccchHHHHHHhhh
Confidence 367889999999998887654
No 206
>PLN02802 triacylglycerol lipase
Probab=88.57 E-value=0.57 Score=50.74 Aligned_cols=36 Identities=14% Similarity=0.162 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHhCC--CcEEEEEechhHHHHHHHHhc
Q 008512 479 MWSELLRDFTVEVVG--EPVHLIGNSIGGMFLSTNLTR 514 (563)
Q Consensus 479 ~~~~~l~~~l~~l~~--~~i~lvGhS~Gg~ia~~~a~~ 514 (563)
++.+.+..+++.... .+|++.|||+||.+|+.+|..
T Consensus 313 qVl~eV~~Ll~~Y~~e~~sI~VTGHSLGGALAtLaA~d 350 (509)
T PLN02802 313 SVVGEVRRLMEKYKGEELSITVTGHSLGAALALLVADE 350 (509)
T ss_pred HHHHHHHHHHHhCCCCcceEEEeccchHHHHHHHHHHH
Confidence 345556666666554 368999999999999988754
No 207
>PLN02209 serine carboxypeptidase
Probab=88.38 E-value=5.9 Score=42.88 Aligned_cols=125 Identities=14% Similarity=0.088 Sum_probs=74.0
Q ss_pred eeEEEEEEC---CeEEEEEEeCC-----CCCeEEEECCCCCChHHHHHHHHH----------------Hhh------CCC
Q 008512 406 YSTRIWRWN---GYQIQYTVAGK-----EGPAILLVHGFGAFLEHYRDNIYD----------------IAD------GGN 455 (563)
Q Consensus 406 ~~~~~~~~~---g~~l~y~~~g~-----~~~~vlllHG~~~~~~~~~~~~~~----------------l~~------~g~ 455 (563)
...-++.++ +..++|..... ..|.||.+-|.+|.+..+..+.+. +.. .-.
T Consensus 39 ~~sGy~~v~~~~~~~lf~~f~es~~~~~~~Pl~lWlnGGPG~SS~~g~f~e~GP~~~~~~~~~~~~~~l~~n~~sW~~~a 118 (437)
T PLN02209 39 LETGYIGIGEEENVQFFYYFIKSDKNPQEDPLIIWLNGGPGCSCLSGLFFENGPLALKNKVYNGSVPSLVSTTYSWTKTA 118 (437)
T ss_pred EEEEEEEecCCCCeEEEEEEEecCCCCCCCCEEEEECCCCcHHHhhhHHHhcCCceeccCCCCCCcccceeCCCchhhcC
Confidence 333456664 45666654432 268999999999987665332211 100 125
Q ss_pred EEEEEc-CCCCCCCCCCC--cCCCHHHHHHHHHHHHHHh----C---CCcEEEEEechhHHHHHHHHhc----c------
Q 008512 456 RVWAIT-LLGFGRSEKPN--IVYTELMWSELLRDFTVEV----V---GEPVHLIGNSIGGMFLSTNLTR----G------ 515 (563)
Q Consensus 456 ~Vi~~D-~~G~G~S~~~~--~~~~~~~~~~~l~~~l~~l----~---~~~i~lvGhS~Gg~ia~~~a~~----~------ 515 (563)
+++-+| ..|.|.|-... ...+.++.++++..++... . ..+++|.|.|+||..+-.+|.. .
T Consensus 119 nllfiDqPvGtGfSy~~~~~~~~~~~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYaG~yvP~~a~~i~~~~~~~~~~ 198 (437)
T PLN02209 119 NIIFLDQPVGSGFSYSKTPIERTSDTSEVKKIHEFLQKWLIKHPQFLSNPFYVVGDSYSGMIVPALVHEISKGNYICCNP 198 (437)
T ss_pred cEEEecCCCCCCccCCCCCCCccCCHHHHHHHHHHHHHHHHhCccccCCCEEEEecCcCceehHHHHHHHHhhcccccCC
Confidence 788899 66899985332 1122223345555555432 2 3689999999999987666542 1
Q ss_pred C-cccEEEEEcCcCCh
Q 008512 516 K-LYAFLLSVNYLLSR 530 (563)
Q Consensus 516 ~-~~~~v~~~~~~~~~ 530 (563)
. -.+.+++.++....
T Consensus 199 ~inl~Gi~igng~td~ 214 (437)
T PLN02209 199 PINLQGYVLGNPITHI 214 (437)
T ss_pred ceeeeeEEecCcccCh
Confidence 1 23567777775554
No 208
>PLN03016 sinapoylglucose-malate O-sinapoyltransferase
Probab=88.26 E-value=3.3 Score=44.75 Aligned_cols=124 Identities=15% Similarity=0.068 Sum_probs=72.5
Q ss_pred eEEEEEEC---CeEEEEEEeCC-----CCCeEEEECCCCCChHHHHHHH---HH-------------Hhh------CCCE
Q 008512 407 STRIWRWN---GYQIQYTVAGK-----EGPAILLVHGFGAFLEHYRDNI---YD-------------IAD------GGNR 456 (563)
Q Consensus 407 ~~~~~~~~---g~~l~y~~~g~-----~~~~vlllHG~~~~~~~~~~~~---~~-------------l~~------~g~~ 456 (563)
..-++.++ +..++|..... ..|.||.+-|.+|.+..+..+. +. +.. +-.+
T Consensus 38 ~sGy~~v~~~~~~~lfy~f~es~~~~~~~P~~lWlnGGPG~SS~~g~~~e~GP~~~~~~~~~~~~~~l~~n~~sW~~~an 117 (433)
T PLN03016 38 ETGYIGIGEDENVQFFYYFIKSENNPKEDPLLIWLNGGPGCSCLGGIIFENGPVGLKFEVFNGSAPSLFSTTYSWTKMAN 117 (433)
T ss_pred EEEEEEecCCCCeEEEEEEEecCCCcccCCEEEEEcCCCcHHHHHHHHHhcCCceeeccccCCCCCceeeCCCchhhcCc
Confidence 34455553 45666654332 2689999999999876432211 11 100 1267
Q ss_pred EEEEc-CCCCCCCCCCC-cCC--CHH---HHHHHHHHHHHHh---CCCcEEEEEechhHHHHHHHHhc----c------C
Q 008512 457 VWAIT-LLGFGRSEKPN-IVY--TEL---MWSELLRDFTVEV---VGEPVHLIGNSIGGMFLSTNLTR----G------K 516 (563)
Q Consensus 457 Vi~~D-~~G~G~S~~~~-~~~--~~~---~~~~~l~~~l~~l---~~~~i~lvGhS~Gg~ia~~~a~~----~------~ 516 (563)
++-+| ..|.|.|.... ... +.+ ++.+.+..++... ...+++|.|.|+||..+-.+|.. . .
T Consensus 118 llfiDqPvGtGfSy~~~~~~~~~d~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYaG~yvP~la~~i~~~n~~~~~~~ 197 (433)
T PLN03016 118 IIFLDQPVGSGFSYSKTPIDKTGDISEVKRTHEFLQKWLSRHPQYFSNPLYVVGDSYSGMIVPALVQEISQGNYICCEPP 197 (433)
T ss_pred EEEecCCCCCCccCCCCCCCccCCHHHHHHHHHHHHHHHHhChhhcCCCEEEEccCccceehHHHHHHHHhhcccccCCc
Confidence 89999 66999995432 111 222 3333333444333 34789999999999988766542 1 1
Q ss_pred -cccEEEEEcCcCCh
Q 008512 517 -LYAFLLSVNYLLSR 530 (563)
Q Consensus 517 -~~~~v~~~~~~~~~ 530 (563)
-.+.+++.++....
T Consensus 198 inLkGi~iGNg~t~~ 212 (433)
T PLN03016 198 INLQGYMLGNPVTYM 212 (433)
T ss_pred ccceeeEecCCCcCc
Confidence 24677777775544
No 209
>PF08840 BAAT_C: BAAT / Acyl-CoA thioester hydrolase C terminal; InterPro: IPR014940 Acyl-CoA thioesterases are a group of enzymes that catalyse the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH), providing the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH. Bile acid-CoA:amino acid N-acetyltransferase (BAAT) is involved in bile acid metabolism and may also act as an acyl-CoA thioesterase that regulates intracellular levels of free fatty acids []. This entry represents a catalytic domain is found at the C terminus of acyl-CoA thioester hydrolases and bile acid-CoA:amino acid N-acetyltransferases. ; PDB: 3K2I_B 3HLK_B.
Probab=88.06 E-value=1.2 Score=43.11 Aligned_cols=33 Identities=15% Similarity=0.156 Sum_probs=26.5
Q ss_pred CcEEEEEechhHHHHHHHHhccCcccEEEEEcC
Q 008512 494 EPVHLIGNSIGGMFLSTNLTRGKLYAFLLSVNY 526 (563)
Q Consensus 494 ~~i~lvGhS~Gg~ia~~~a~~~~~~~~v~~~~~ 526 (563)
++|.|+|.|.||-+|+.+|...+.++.++.+++
T Consensus 22 ~~Igi~G~SkGaelALllAs~~~~i~avVa~~p 54 (213)
T PF08840_consen 22 DKIGIIGISKGAELALLLASRFPQISAVVAISP 54 (213)
T ss_dssp SSEEEEEETHHHHHHHHHHHHSSSEEEEEEES-
T ss_pred CCEEEEEECHHHHHHHHHHhcCCCccEEEEeCC
Confidence 689999999999999999998445666666555
No 210
>PLN02310 triacylglycerol lipase
Probab=88.05 E-value=0.65 Score=49.18 Aligned_cols=61 Identities=8% Similarity=-0.003 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHhC----CCcEEEEEechhHHHHHHHHhc-----cC-cccEEEEEcCcCChHHHHHHhh
Q 008512 478 LMWSELLRDFTVEVV----GEPVHLIGNSIGGMFLSTNLTR-----GK-LYAFLLSVNYLLSRSIICRLFC 538 (563)
Q Consensus 478 ~~~~~~l~~~l~~l~----~~~i~lvGhS~Gg~ia~~~a~~-----~~-~~~~v~~~~~~~~~~~~~~~~~ 538 (563)
+++.+.+..+++.+. ..+|++.||||||.+|+..|.. +. .+..+....+-.-...+.+.+.
T Consensus 189 ~qVl~eV~~L~~~y~~~~e~~sI~vTGHSLGGALAtLaA~dl~~~~~~~~v~vyTFGsPRVGN~~Fa~~~~ 259 (405)
T PLN02310 189 EQVMQEVKRLVNFYRGKGEEVSLTVTGHSLGGALALLNAYEAATTIPDLFVSVISFGAPRVGNIAFKEKLN 259 (405)
T ss_pred HHHHHHHHHHHHhhcccCCcceEEEEcccHHHHHHHHHHHHHHHhCcCcceeEEEecCCCcccHHHHHHHH
Confidence 345555666666553 2479999999999999888753 22 2333444444443444444443
No 211
>KOG2551 consensus Phospholipase/carboxyhydrolase [Amino acid transport and metabolism]
Probab=87.85 E-value=6.7 Score=37.99 Aligned_cols=103 Identities=14% Similarity=0.019 Sum_probs=60.4
Q ss_pred CCCeEEEECCCCCChHHHH----HHHHHHhhCCCEEEEEcCCC----CCCCCCCC-------------------------
Q 008512 426 EGPAILLVHGFGAFLEHYR----DNIYDIADGGNRVWAITLLG----FGRSEKPN------------------------- 472 (563)
Q Consensus 426 ~~~~vlllHG~~~~~~~~~----~~~~~l~~~g~~Vi~~D~~G----~G~S~~~~------------------------- 472 (563)
.++.||++||+..+...|. .+-+.+.+. +..+.+|-|- -+.+....
T Consensus 4 ~k~rvLcLHGfrQsg~~F~~Ktg~~rK~l~k~-~el~f~~aPh~~~~~~~~~~~~~~~~~a~~~~~~~~~~Wf~~n~~~~ 82 (230)
T KOG2551|consen 4 KKLRVLCLHGFRQSGKVFSEKTGSLRKLLKKL-AELVFPDAPHELPKADLPDSEREKKFDAPPDVEQNRYGWFSNNEASF 82 (230)
T ss_pred CCceEEEecchhhccHHHHHHhhhHHHHHHhh-heEEecCCCccCCcccCCcccccccccCCcccccchhhhhccccccc
Confidence 3567999999998887776 334455554 6777766652 11111000
Q ss_pred -cCCCHHHHHHHHHHHHHHhCCCcEEEEEechhHHHHHHHHhc---c------CcccEEEEEcCcCCh
Q 008512 473 -IVYTELMWSELLRDFTVEVVGEPVHLIGNSIGGMFLSTNLTR---G------KLYAFLLSVNYLLSR 530 (563)
Q Consensus 473 -~~~~~~~~~~~l~~~l~~l~~~~i~lvGhS~Gg~ia~~~a~~---~------~~~~~v~~~~~~~~~ 530 (563)
....++.-.+.+.+.+.+.|. ==-|+|+|.|+.++..++.. . .-.+-+++++++...
T Consensus 83 ~~~~~~eesl~yl~~~i~enGP-FDGllGFSQGA~laa~l~~~~~~~~~~~~~P~~kF~v~~SGf~~~ 149 (230)
T KOG2551|consen 83 TEYFGFEESLEYLEDYIKENGP-FDGLLGFSQGAALAALLAGLGQKGLPYVKQPPFKFAVFISGFKFP 149 (230)
T ss_pred ccccChHHHHHHHHHHHHHhCC-CccccccchhHHHHHHhhcccccCCcccCCCCeEEEEEEecCCCC
Confidence 011233444444455544331 23578999999999888762 1 123667777777666
No 212
>KOG1516 consensus Carboxylesterase and related proteins [General function prediction only]
Probab=87.73 E-value=1.2 Score=49.53 Aligned_cols=88 Identities=20% Similarity=0.122 Sum_probs=53.3
Q ss_pred CCeEEEECCCCC---ChHHHH--HHHHHHhhCCCEEEEEcCC----CCCCCC--CCCcCCCHHHHHHHHHH---HHHHhC
Q 008512 427 GPAILLVHGFGA---FLEHYR--DNIYDIADGGNRVWAITLL----GFGRSE--KPNIVYTELMWSELLRD---FTVEVV 492 (563)
Q Consensus 427 ~~~vlllHG~~~---~~~~~~--~~~~~l~~~g~~Vi~~D~~----G~G~S~--~~~~~~~~~~~~~~l~~---~l~~l~ 492 (563)
-|++|+|||.+- +...+. .....+...+.-|+++.+| |+.... ..+..+.+.|+...+.- -|...+
T Consensus 112 ~pV~V~iHGG~~~~gs~~~~~~~~~~~~~~~~~VVvVt~~YRLG~lGF~st~d~~~~gN~gl~Dq~~AL~wv~~~I~~FG 191 (545)
T KOG1516|consen 112 LPVMVYIHGGGFQFGSASSFEIISPAYVLLLKDVVVVTINYRLGPLGFLSTGDSAAPGNLGLFDQLLALRWVKDNIPSFG 191 (545)
T ss_pred CCEEEEEeCCceeeccccchhhcCchhccccCCEEEEEecccceeceeeecCCCCCCCcccHHHHHHHHHHHHHHHHhcC
Confidence 588999999753 333332 2222233334667777776 333222 12345666666555544 455555
Q ss_pred C--CcEEEEEechhHHHHHHHHhc
Q 008512 493 G--EPVHLIGNSIGGMFLSTNLTR 514 (563)
Q Consensus 493 ~--~~i~lvGhS~Gg~ia~~~a~~ 514 (563)
. ++|.|+|||.||..+..+...
T Consensus 192 Gdp~~vTl~G~saGa~~v~~l~~S 215 (545)
T KOG1516|consen 192 GDPKNVTLFGHSAGAASVSLLTLS 215 (545)
T ss_pred CCCCeEEEEeechhHHHHHHHhcC
Confidence 4 679999999999999776654
No 213
>PLN02753 triacylglycerol lipase
Probab=87.30 E-value=0.76 Score=49.96 Aligned_cols=36 Identities=14% Similarity=0.136 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHhCC-----CcEEEEEechhHHHHHHHHh
Q 008512 478 LMWSELLRDFTVEVVG-----EPVHLIGNSIGGMFLSTNLT 513 (563)
Q Consensus 478 ~~~~~~l~~~l~~l~~-----~~i~lvGhS~Gg~ia~~~a~ 513 (563)
+++.+.|..+++..+. .+|++.|||+||.+|+..|.
T Consensus 291 eQVl~eVkrLl~~Y~~e~~~~~sItVTGHSLGGALAtLaA~ 331 (531)
T PLN02753 291 EQILTEVKRLVEEHGDDDDSDLSITVTGHSLGGALAILSAY 331 (531)
T ss_pred HHHHHHHHHHHHHcccccCCCceEEEEccCHHHHHHHHHHH
Confidence 3445556666666542 58999999999999998874
No 214
>PF11339 DUF3141: Protein of unknown function (DUF3141); InterPro: IPR024501 This family of proteins appears to be predominantly expressed in Proteobacteria. Their function is unknown.
Probab=87.28 E-value=3.5 Score=44.74 Aligned_cols=76 Identities=20% Similarity=0.136 Sum_probs=54.0
Q ss_pred HHHHHHhhCCCEEEEEcCCCCCCCCCCCcCCCHHHHHHHHHHHHHHhC-----CCcEEEEEechhHHHHHHHHhc-cCcc
Q 008512 445 DNIYDIADGGNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFTVEVV-----GEPVHLIGNSIGGMFLSTNLTR-GKLY 518 (563)
Q Consensus 445 ~~~~~l~~~g~~Vi~~D~~G~G~S~~~~~~~~~~~~~~~l~~~l~~l~-----~~~i~lvGhS~Gg~ia~~~a~~-~~~~ 518 (563)
.+...|.. |+.||.+.+. ..+...-++++.......+++++. ..+.+|+|.+.||..++.+|+. |+.+
T Consensus 92 evG~AL~~-GHPvYFV~F~-----p~P~pgQTl~DV~~ae~~Fv~~V~~~hp~~~kp~liGnCQgGWa~~mlAA~~Pd~~ 165 (581)
T PF11339_consen 92 EVGVALRA-GHPVYFVGFF-----PEPEPGQTLEDVMRAEAAFVEEVAERHPDAPKPNLIGNCQGGWAAMMLAALRPDLV 165 (581)
T ss_pred HHHHHHHc-CCCeEEEEec-----CCCCCCCcHHHHHHHHHHHHHHHHHhCCCCCCceEEeccHHHHHHHHHHhcCcCcc
Confidence 34445555 9999887664 223334578887776666766552 2489999999999999999887 8888
Q ss_pred cEEEEEcC
Q 008512 519 AFLLSVNY 526 (563)
Q Consensus 519 ~~v~~~~~ 526 (563)
+-+++...
T Consensus 166 gplvlaGa 173 (581)
T PF11339_consen 166 GPLVLAGA 173 (581)
T ss_pred CceeecCC
Confidence 87777444
No 215
>PLN03037 lipase class 3 family protein; Provisional
Probab=86.95 E-value=0.8 Score=49.74 Aligned_cols=36 Identities=17% Similarity=0.182 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHhC----CCcEEEEEechhHHHHHHHHhc
Q 008512 479 MWSELLRDFTVEVV----GEPVHLIGNSIGGMFLSTNLTR 514 (563)
Q Consensus 479 ~~~~~l~~~l~~l~----~~~i~lvGhS~Gg~ia~~~a~~ 514 (563)
++.+.|..+++.+. ..+|++.||||||.+|+..|..
T Consensus 299 QVl~eV~rLv~~Yk~~ge~~SItVTGHSLGGALAtLaA~D 338 (525)
T PLN03037 299 QVMEEVKRLVNFFKDRGEEVSLTITGHSLGGALALLNAYE 338 (525)
T ss_pred HHHHHHHHHHHhccccCCcceEEEeccCHHHHHHHHHHHH
Confidence 44556666776654 2469999999999999888753
No 216
>PLN02719 triacylglycerol lipase
Probab=86.94 E-value=0.8 Score=49.66 Aligned_cols=36 Identities=11% Similarity=0.138 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHhCC-----CcEEEEEechhHHHHHHHHhc
Q 008512 479 MWSELLRDFTVEVVG-----EPVHLIGNSIGGMFLSTNLTR 514 (563)
Q Consensus 479 ~~~~~l~~~l~~l~~-----~~i~lvGhS~Gg~ia~~~a~~ 514 (563)
++...|..+++.... .+|++.|||+||.+|+.+|..
T Consensus 278 QVl~eV~rL~~~Ypd~~ge~~sItVTGHSLGGALAtLaA~D 318 (518)
T PLN02719 278 QVLTEVKRLVERYGDEEGEELSITVTGHSLGGALAVLSAYD 318 (518)
T ss_pred HHHHHHHHHHHHCCcccCCcceEEEecCcHHHHHHHHHHHH
Confidence 345555566665542 379999999999999988753
No 217
>PLN02761 lipase class 3 family protein
Probab=86.52 E-value=0.9 Score=49.38 Aligned_cols=36 Identities=8% Similarity=0.019 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHhC------CCcEEEEEechhHHHHHHHHh
Q 008512 478 LMWSELLRDFTVEVV------GEPVHLIGNSIGGMFLSTNLT 513 (563)
Q Consensus 478 ~~~~~~l~~~l~~l~------~~~i~lvGhS~Gg~ia~~~a~ 513 (563)
+++...|..+++..+ ..+|++.||||||.+|+..|.
T Consensus 272 ~qVl~eV~rL~~~Y~~~~k~e~~sItVTGHSLGGALAtLaA~ 313 (527)
T PLN02761 272 EQVLAEVKRLVEYYGTEEEGHEISITVTGHSLGASLALVSAY 313 (527)
T ss_pred HHHHHHHHHHHHhcccccCCCCceEEEeccchHHHHHHHHHH
Confidence 345556666666652 246999999999999988874
No 218
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=86.30 E-value=2.2 Score=47.47 Aligned_cols=103 Identities=18% Similarity=0.163 Sum_probs=68.1
Q ss_pred CCCeEEEECCCCCC--hHHHHHHHHHHhhCCCEEEEEcCCCCCCCCCC--------CcCCCHHHHHHHHHHHHHHhC--C
Q 008512 426 EGPAILLVHGFGAF--LEHYRDNIYDIADGGNRVWAITLLGFGRSEKP--------NIVYTELMWSELLRDFTVEVV--G 493 (563)
Q Consensus 426 ~~~~vlllHG~~~~--~~~~~~~~~~l~~~g~~Vi~~D~~G~G~S~~~--------~~~~~~~~~~~~l~~~l~~l~--~ 493 (563)
++|.+|+--|.-|. ...|....-.|..+|+--....-||-|.=... ....++.|+++-...++++-- .
T Consensus 447 ~~p~lLygYGaYG~s~~p~Fs~~~lSLlDRGfiyAIAHVRGGgelG~~WYe~GK~l~K~NTf~DFIa~a~~Lv~~g~~~~ 526 (682)
T COG1770 447 SAPLLLYGYGAYGISMDPSFSIARLSLLDRGFVYAIAHVRGGGELGRAWYEDGKLLNKKNTFTDFIAAARHLVKEGYTSP 526 (682)
T ss_pred CCcEEEEEeccccccCCcCcccceeeeecCceEEEEEEeecccccChHHHHhhhhhhccccHHHHHHHHHHHHHcCcCCc
Confidence 36667776665443 23454444556777865444466776644321 235688888888888876532 3
Q ss_pred CcEEEEEechhHHHHHHHHhc-cCcccEEEEEcCcC
Q 008512 494 EPVHLIGNSIGGMFLSTNLTR-GKLYAFLLSVNYLL 528 (563)
Q Consensus 494 ~~i~lvGhS~Gg~ia~~~a~~-~~~~~~v~~~~~~~ 528 (563)
+.++++|-|.||+++...+.. |++.++++..-++.
T Consensus 527 ~~i~a~GGSAGGmLmGav~N~~P~lf~~iiA~VPFV 562 (682)
T COG1770 527 DRIVAIGGSAGGMLMGAVANMAPDLFAGIIAQVPFV 562 (682)
T ss_pred cceEEeccCchhHHHHHHHhhChhhhhheeecCCcc
Confidence 679999999999999887765 88887776644433
No 219
>PF01083 Cutinase: Cutinase; InterPro: IPR000675 Aerial plant organs are protected by a cuticle composed of an insoluble polymeric structural compound, cutin, which is a polyester composed of hydroxy and hydroxyepoxy fatty acids []. Plant pathogenic fungi produce extracellular degradative enzymes [] that play an important role in pathogenesis. They include cutinase, which hydrolyses cutin, facilitating fungus penetration through the cuticle. Inhibition of the enzyme can prevent fungal infection through intact cuticles. Cutin monomers released from the cuticle by small amounts of cutinase on fungal spore surfaces can greatly increase the amount of cutinase secreted by the spore, the mechanism for which process is as yet unknown [, ]. Cutinase is a serine esterase containing the classical Ser, His, Asp triad of serine hydrolases []. The protein belongs to the alpha-beta class, with a central beta-sheet of 5 parallel strands covered by 5 helices on either side of the sheet. The active site cleft is partly covered by 2 thin bridges formed by amino acid side chains, by contrast with the hydrophobic lid possessed by other lipases []. The protein also contains 2 disulphide bridges, which are essential for activity, their cleavage resulting in complete loss of enzymatic activity []. Two cutinase-like proteins (MtCY39.35 and MtCY339.08c) have been found in the genome of the bacteria Mycobacterium tuberculosis.; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 1XZK_A 1XZA_A 1CUD_C 1XZI_A 1XZH_A 1CUF_A 1FFD_A 2CUT_A 1FFA_A 1CUA_A ....
Probab=85.87 E-value=1.4 Score=41.54 Aligned_cols=60 Identities=13% Similarity=0.151 Sum_probs=34.0
Q ss_pred CEEEEEcCCCCCCCC--CCCcCCCHHHHHHHHHHHHHHhCCCcEEEEEechhHHHHHHHHhc
Q 008512 455 NRVWAITLLGFGRSE--KPNIVYTELMWSELLRDFTVEVVGEPVHLIGNSIGGMFLSTNLTR 514 (563)
Q Consensus 455 ~~Vi~~D~~G~G~S~--~~~~~~~~~~~~~~l~~~l~~l~~~~i~lvGhS~Gg~ia~~~a~~ 514 (563)
..+..+++|--.... .........++...+.+....-...+++|+|+|.|+.++..++..
T Consensus 40 ~~~~~V~YpA~~~~~~y~~S~~~G~~~~~~~i~~~~~~CP~~kivl~GYSQGA~V~~~~~~~ 101 (179)
T PF01083_consen 40 VAVQGVEYPASLGPNSYGDSVAAGVANLVRLIEEYAARCPNTKIVLAGYSQGAMVVGDALSG 101 (179)
T ss_dssp EEEEE--S---SCGGSCHHHHHHHHHHHHHHHHHHHHHSTTSEEEEEEETHHHHHHHHHHHH
T ss_pred eEEEecCCCCCCCcccccccHHHHHHHHHHHHHHHHHhCCCCCEEEEecccccHHHHHHHHh
Confidence 556667777433211 000011233455555555556677899999999999999998754
No 220
>KOG4569 consensus Predicted lipase [Lipid transport and metabolism]
Probab=85.56 E-value=1 Score=47.02 Aligned_cols=37 Identities=19% Similarity=0.174 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEEechhHHHHHHHHhc
Q 008512 478 LMWSELLRDFTVEVVGEPVHLIGNSIGGMFLSTNLTR 514 (563)
Q Consensus 478 ~~~~~~l~~~l~~l~~~~i~lvGhS~Gg~ia~~~a~~ 514 (563)
+.+.+++..+++..+.-+|.+.|||+||.+|..+|..
T Consensus 155 ~~~~~~~~~L~~~~~~~~i~vTGHSLGgAlA~laa~~ 191 (336)
T KOG4569|consen 155 SGLDAELRRLIELYPNYSIWVTGHSLGGALASLAALD 191 (336)
T ss_pred HHHHHHHHHHHHhcCCcEEEEecCChHHHHHHHHHHH
Confidence 5778888888988888899999999999999888754
No 221
>COG2939 Carboxypeptidase C (cathepsin A) [Amino acid transport and metabolism]
Probab=85.43 E-value=2.3 Score=45.89 Aligned_cols=88 Identities=17% Similarity=0.041 Sum_probs=59.7
Q ss_pred CCeEEEECCCCCChHHHHHHHHH----Hhh--------------CCCEEEEEc-CCCCCCCCC--CCcCCCHHHHHHHHH
Q 008512 427 GPAILLVHGFGAFLEHYRDNIYD----IAD--------------GGNRVWAIT-LLGFGRSEK--PNIVYTELMWSELLR 485 (563)
Q Consensus 427 ~~~vlllHG~~~~~~~~~~~~~~----l~~--------------~g~~Vi~~D-~~G~G~S~~--~~~~~~~~~~~~~l~ 485 (563)
.|.|+.+.|.+|++..+..+.+. +.. ..-.++-+| .-|-|.|.. +....++....+|+.
T Consensus 101 rPvi~wlNGGPGcSS~~g~l~elGP~rI~~~~~P~~~~NP~SW~~~adLvFiDqPvGTGfS~a~~~e~~~d~~~~~~D~~ 180 (498)
T COG2939 101 RPVIFWLNGGPGCSSVTGLLGELGPKRIQSGTSPSYPDNPGSWLDFADLVFIDQPVGTGFSRALGDEKKKDFEGAGKDVY 180 (498)
T ss_pred CceEEEecCCCChHhhhhhhhhcCCeeeeCCCCCCCCCCccccccCCceEEEecCcccCcccccccccccchhccchhHH
Confidence 77899999999998887655332 110 013688899 679999973 333445555555555
Q ss_pred HHHHH-------hCC--CcEEEEEechhHHHHHHHHhc
Q 008512 486 DFTVE-------VVG--EPVHLIGNSIGGMFLSTNLTR 514 (563)
Q Consensus 486 ~~l~~-------l~~--~~i~lvGhS~Gg~ia~~~a~~ 514 (563)
.+.+. ... .+.+|+|-|+||.-+..+|..
T Consensus 181 ~~~~~f~~~fp~~~r~~~~~~L~GESYgg~yip~~A~~ 218 (498)
T COG2939 181 SFLRLFFDKFPHYARLLSPKFLAGESYGGHYIPVFAHE 218 (498)
T ss_pred HHHHHHHHHHHHHhhhcCceeEeeccccchhhHHHHHH
Confidence 54432 222 589999999999999888753
No 222
>PLN02847 triacylglycerol lipase
Probab=84.60 E-value=1.4 Score=48.61 Aligned_cols=26 Identities=19% Similarity=0.186 Sum_probs=20.7
Q ss_pred HHHhCCCcEEEEEechhHHHHHHHHh
Q 008512 488 TVEVVGEPVHLIGNSIGGMFLSTNLT 513 (563)
Q Consensus 488 l~~l~~~~i~lvGhS~Gg~ia~~~a~ 513 (563)
+.....-+++++||||||.+|..++.
T Consensus 245 l~~~PdYkLVITGHSLGGGVAALLAi 270 (633)
T PLN02847 245 LDEYPDFKIKIVGHSLGGGTAALLTY 270 (633)
T ss_pred HHHCCCCeEEEeccChHHHHHHHHHH
Confidence 34445578999999999999988764
No 223
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=82.68 E-value=8.9 Score=40.27 Aligned_cols=101 Identities=16% Similarity=0.093 Sum_probs=60.5
Q ss_pred HHHHHHHhC-------CCeEEEEEECCcccccCCHhHHHHHHHHHHHHHHHHHh------cCCcEEEE--E--------c
Q 008512 61 LGLVAASKY-------QAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKE------QGSDLMIR--F--------G 117 (563)
Q Consensus 61 ~aL~~A~~~-------~~vl~vfi~dp~~~~~~~~~r~~Fl~~sL~~L~~~L~~------~g~~L~v~--~--------g 117 (563)
.|+.+|++. ..+..|++.++.........-..--.+-+++..+.+++ .|+..... . |
T Consensus 20 ~Al~~AielA~~~g~~AeL~lL~Vv~~~~~~~~~~~~~~~~eelle~~~~~~~~~l~~~~~gV~ve~~vv~~~~~~~~~G 99 (357)
T PRK12652 20 QTVAYAVESAEEAAETPTVHLVAAASGRAVDPEGQDELAAAEELLERVEVWATEDLGDDASSVTIETALLGTDEYLFGPG 99 (357)
T ss_pred HHHHHHHHHHHhcCCCCEEEEEEEecCcccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCCceEEEEEeccccccCCC
Confidence 466666532 36788899886432211110001111234444444443 47764333 3 8
Q ss_pred ChHHHHHHHHHHhCccEEEEccccChhHHH-HHHHHHHHHHhcCC
Q 008512 118 RVENVIRELVEEVKATSVFAEEEVEYHLRQ-MMAIVDETLAKVSL 161 (563)
Q Consensus 118 ~~~~~l~~l~~~~~a~~V~~~~~~~~~~~~-~d~~v~~~l~~~~i 161 (563)
++.+.+.+.+++.+++.|+.+.+|.|.... ..+-+...|.+.|+
T Consensus 100 ~pae~Iv~~Aee~~aDLIVm~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (357)
T PRK12652 100 DYAEVLIAYAEEHGIDRVVLDPEYNPGGTAPMLQPLERELARAGI 144 (357)
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCCCCCCcccchHHHHHHhcCC
Confidence 999999999999999999999999876442 23345556666554
No 224
>PF04083 Abhydro_lipase: Partial alpha/beta-hydrolase lipase region; InterPro: IPR006693 The alpha/beta hydrolase fold is common to several hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is similar: an alpha/beta sheet, not barrel, of eight beta-sheets connected by alpha-helices []. This entry represents the N-terminal part of an alpha/beta hydrolase domain found in a number of lipases.; GO: 0006629 lipid metabolic process; PDB: 1K8Q_B 1HLG_B.
Probab=82.34 E-value=2.2 Score=32.84 Aligned_cols=17 Identities=29% Similarity=0.563 Sum_probs=10.2
Q ss_pred CCeEEEECCCCCChHHH
Q 008512 427 GPAILLVHGFGAFLEHY 443 (563)
Q Consensus 427 ~~~vlllHG~~~~~~~~ 443 (563)
+++|+|.||+.+++..|
T Consensus 43 k~pVll~HGL~~ss~~w 59 (63)
T PF04083_consen 43 KPPVLLQHGLLQSSDDW 59 (63)
T ss_dssp --EEEEE--TT--GGGG
T ss_pred CCcEEEECCcccChHHH
Confidence 67999999999999887
No 225
>KOG1282 consensus Serine carboxypeptidases (lysosomal cathepsin A) [Posttranslational modification, protein turnover, chaperones; Amino acid transport and metabolism]
Probab=81.89 E-value=10 Score=41.10 Aligned_cols=126 Identities=13% Similarity=0.010 Sum_probs=78.2
Q ss_pred CCeeEEEEEEC---CeEEEEEEeCC-----CCCeEEEECCCCCChHHHHHHHHHHhh-----C-------------CCEE
Q 008512 404 GVYSTRIWRWN---GYQIQYTVAGK-----EGPAILLVHGFGAFLEHYRDNIYDIAD-----G-------------GNRV 457 (563)
Q Consensus 404 ~~~~~~~~~~~---g~~l~y~~~g~-----~~~~vlllHG~~~~~~~~~~~~~~l~~-----~-------------g~~V 457 (563)
..+..-++.++ +..++|.-... .+|.||.+-|.+|.+..- .+..++.. . -.++
T Consensus 42 f~~ysGYv~v~~~~~~~LFYwf~eS~~~P~~dPlvLWLnGGPGCSSl~-G~~~E~GPf~v~~~G~tL~~N~ySWnk~aNi 120 (454)
T KOG1282|consen 42 FKQYSGYVTVNESEGRQLFYWFFESENNPETDPLVLWLNGGPGCSSLG-GLFEENGPFRVKYNGKTLYLNPYSWNKEANI 120 (454)
T ss_pred cccccceEECCCCCCceEEEEEEEccCCCCCCCEEEEeCCCCCccchh-hhhhhcCCeEEcCCCCcceeCCccccccccE
Confidence 34444577776 67888865432 277899999999977654 33333211 1 1367
Q ss_pred EEEcCC-CCCCCCC-CC--cCCCHHHHHHHHHHHHHH----h---CCCcEEEEEechhHHHHHHHHhc----c------C
Q 008512 458 WAITLL-GFGRSEK-PN--IVYTELMWSELLRDFTVE----V---VGEPVHLIGNSIGGMFLSTNLTR----G------K 516 (563)
Q Consensus 458 i~~D~~-G~G~S~~-~~--~~~~~~~~~~~l~~~l~~----l---~~~~i~lvGhS~Gg~ia~~~a~~----~------~ 516 (563)
+-+|.| |-|.|-. .. ...+.+..++|+..++.. . ...+++|.|-|++|+.+-.+|.. . .
T Consensus 121 LfLd~PvGvGFSYs~~~~~~~~~D~~~A~d~~~FL~~wf~kfPey~~~~fyI~GESYAG~YVP~La~~I~~~N~~~~~~~ 200 (454)
T KOG1282|consen 121 LFLDQPVGVGFSYSNTSSDYKTGDDGTAKDNYEFLQKWFEKFPEYKSNDFYIAGESYAGHYVPALAQEILKGNKKCCKPN 200 (454)
T ss_pred EEEecCCcCCccccCCCCcCcCCcHHHHHHHHHHHHHHHHhChhhcCCCeEEecccccceehHHHHHHHHhccccccCCc
Confidence 788865 7888842 22 122444555666655543 2 34789999999999888776643 1 1
Q ss_pred -cccEEEEEcCcCCh
Q 008512 517 -LYAFLLSVNYLLSR 530 (563)
Q Consensus 517 -~~~~v~~~~~~~~~ 530 (563)
-.+.+++.++....
T Consensus 201 iNLkG~~IGNg~td~ 215 (454)
T KOG1282|consen 201 INLKGYAIGNGLTDP 215 (454)
T ss_pred ccceEEEecCcccCc
Confidence 24677777776553
No 226
>PF05576 Peptidase_S37: PS-10 peptidase S37; InterPro: IPR008761 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. These group of serine peptidases belong to MEROPS peptidase family S37 (clan SC). The members of this group of secreted peptidases are restricted to bacteria. In Streptomyces lividans the peptidase removes tripeptides from the N terminus of extracellular proteins (tripeptidyl aminopeptidase,Tap) [, ].
Probab=81.17 E-value=2.6 Score=44.47 Aligned_cols=104 Identities=13% Similarity=0.040 Sum_probs=73.6
Q ss_pred EEEEEeCCCCCeEEEECCCCCChHHHHHHHHHHhhCCCEEEEEcCCCCCCCCCCCc---CCCHHHHHHHHHHHHHHhC--
Q 008512 418 IQYTVAGKEGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNI---VYTELMWSELLRDFTVEVV-- 492 (563)
Q Consensus 418 l~y~~~g~~~~~vlllHG~~~~~~~~~~~~~~l~~~g~~Vi~~D~~G~G~S~~~~~---~~~~~~~~~~l~~~l~~l~-- 492 (563)
+...+.+-..|+|+.--|++....-...-...|.+ -+-+.+.+|-||.|...+. ..++.+-+.|.+.+++.+.
T Consensus 54 vtLlHk~~drPtV~~T~GY~~~~~p~r~Ept~Lld--~NQl~vEhRfF~~SrP~p~DW~~Lti~QAA~D~Hri~~A~K~i 131 (448)
T PF05576_consen 54 VTLLHKDFDRPTVLYTEGYNVSTSPRRSEPTQLLD--GNQLSVEHRFFGPSRPEPADWSYLTIWQAASDQHRIVQAFKPI 131 (448)
T ss_pred EEEEEcCCCCCeEEEecCcccccCccccchhHhhc--cceEEEEEeeccCCCCCCCCcccccHhHhhHHHHHHHHHHHhh
Confidence 44445555689999999998754322222223333 3678999999999977653 4578888999998887775
Q ss_pred -CCcEEEEEechhHHHHHHHHhc-cCcccEEEE
Q 008512 493 -GEPVHLIGNSIGGMFLSTNLTR-GKLYAFLLS 523 (563)
Q Consensus 493 -~~~i~lvGhS~Gg~ia~~~a~~-~~~~~~v~~ 523 (563)
.++.+-.|-|-||++++.+=.. |.-+.+.|.
T Consensus 132 Y~~kWISTG~SKGGmTa~y~rrFyP~DVD~tVa 164 (448)
T PF05576_consen 132 YPGKWISTGGSKGGMTAVYYRRFYPDDVDGTVA 164 (448)
T ss_pred ccCCceecCcCCCceeEEEEeeeCCCCCCeeee
Confidence 3789999999999999877554 655555444
No 227
>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]
Probab=80.89 E-value=8.4 Score=45.76 Aligned_cols=95 Identities=15% Similarity=0.100 Sum_probs=63.5
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHHhhCCCEEEEEcCCCCCCCCCCC-cCCCHHHHHHHHHHHHHHhC-CCcEEEEEe
Q 008512 424 GKEGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPN-IVYTELMWSELLRDFTVEVV-GEPVHLIGN 501 (563)
Q Consensus 424 g~~~~~vlllHG~~~~~~~~~~~~~~l~~~g~~Vi~~D~~G~G~S~~~~-~~~~~~~~~~~l~~~l~~l~-~~~i~lvGh 501 (563)
.++.|+++|+|.+-|....+..++..|.- |.+|...... ...++++.+.....-+.++. .+++.++|+
T Consensus 2120 ~se~~~~Ffv~pIEG~tt~l~~la~rle~----------PaYglQ~T~~vP~dSies~A~~yirqirkvQP~GPYrl~GY 2189 (2376)
T KOG1202|consen 2120 QSEEPPLFFVHPIEGFTTALESLASRLEI----------PAYGLQCTEAVPLDSIESLAAYYIRQIRKVQPEGPYRLAGY 2189 (2376)
T ss_pred cccCCceEEEeccccchHHHHHHHhhcCC----------cchhhhccccCCcchHHHHHHHHHHHHHhcCCCCCeeeecc
Confidence 34688999999999888777666665532 3444432222 24577777776666666665 489999999
Q ss_pred chhHHHHHHHHhc---cCcccEEEEEcCcC
Q 008512 502 SIGGMFLSTNLTR---GKLYAFLLSVNYLL 528 (563)
Q Consensus 502 S~Gg~ia~~~a~~---~~~~~~v~~~~~~~ 528 (563)
|+|+.++..+|.. ......+++..+..
T Consensus 2190 SyG~~l~f~ma~~Lqe~~~~~~lillDGsp 2219 (2376)
T KOG1202|consen 2190 SYGACLAFEMASQLQEQQSPAPLILLDGSP 2219 (2376)
T ss_pred chhHHHHHHHHHHHHhhcCCCcEEEecCch
Confidence 9999999988754 23333455555533
No 228
>COG4947 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.81 E-value=2.4 Score=39.25 Aligned_cols=114 Identities=14% Similarity=0.232 Sum_probs=67.8
Q ss_pred EEEEEEeCCCCCeEEEECCCCCChHHHHH--HHHHHhh---CC-CEEEEEcCCCCCCCC-CC---CcCCCHHHHHHHHHH
Q 008512 417 QIQYTVAGKEGPAILLVHGFGAFLEHYRD--NIYDIAD---GG-NRVWAITLLGFGRSE-KP---NIVYTELMWSELLRD 486 (563)
Q Consensus 417 ~l~y~~~g~~~~~vlllHG~~~~~~~~~~--~~~~l~~---~g-~~Vi~~D~~G~G~S~-~~---~~~~~~~~~~~~l~~ 486 (563)
.+.+...|-.+.+||+++--+|....|.. ++..|++ .| ...++++ |-..-+ -. ......+.....-..
T Consensus 16 dMel~ryGHaG~pVvvFpts~Grf~eyed~G~v~ala~fie~G~vQlft~~--gldsESf~a~h~~~adr~~rH~AyerY 93 (227)
T COG4947 16 DMELNRYGHAGIPVVVFPTSGGRFNEYEDFGMVDALASFIEEGLVQLFTLS--GLDSESFLATHKNAADRAERHRAYERY 93 (227)
T ss_pred hhhhhhccCCCCcEEEEecCCCcchhhhhcccHHHHHHHHhcCcEEEEEec--ccchHhHhhhcCCHHHHHHHHHHHHHH
Confidence 34555667667788888888877666663 3444433 34 2334433 221100 00 001112223333344
Q ss_pred HHHHhCCCcEEEEEechhHHHHHHHHhc-cCcccEEEEEcCcCChHH
Q 008512 487 FTVEVVGEPVHLIGNSIGGMFLSTNLTR-GKLYAFLLSVNYLLSRSI 532 (563)
Q Consensus 487 ~l~~l~~~~i~lvGhS~Gg~ia~~~a~~-~~~~~~v~~~~~~~~~~~ 532 (563)
++++.-...-.+-|-||||+.+.++.-+ |++..+++..++..+...
T Consensus 94 v~eEalpgs~~~sgcsmGayhA~nfvfrhP~lftkvialSGvYdard 140 (227)
T COG4947 94 VIEEALPGSTIVSGCSMGAYHAANFVFRHPHLFTKVIALSGVYDARD 140 (227)
T ss_pred HHHhhcCCCccccccchhhhhhhhhheeChhHhhhheeecceeeHHH
Confidence 5666555677788999999999999887 998888888877665543
No 229
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=79.65 E-value=26 Score=30.98 Aligned_cols=83 Identities=17% Similarity=0.013 Sum_probs=50.6
Q ss_pred cCCHHHHHHHhC-----CCeEEEEEECCcccccC--C-----H----hHHHHHHHHHHHHHHHHHhcCCc--EEEEEc-C
Q 008512 58 DDHLGLVAASKY-----QAVVPLYVFDHRILSRY--S-----N----EMLELVIFALEDLRKSLKEQGSD--LMIRFG-R 118 (563)
Q Consensus 58 ~DN~aL~~A~~~-----~~vl~vfi~dp~~~~~~--~-----~----~r~~Fl~~sL~~L~~~L~~~g~~--L~v~~g-~ 118 (563)
.-..||.+|++. .++..+++.++...... + . ....-..+-|.+..+.+++.|+. ..+..| +
T Consensus 11 ~s~~al~~a~~~a~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~ 90 (146)
T cd01989 11 KSKNALKWALDNLATKGQTIVLVHVHPPITSIPSSSGKLEVASAYKQEEDKEAKELLLPYRCFCSRKGVQCEDVVLEDDD 90 (146)
T ss_pred ccHHHHHHHHHhccCCCCcEEEEEeccCcccCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeEEEEEEeCCc
Confidence 344677777743 47888999876432111 1 0 00112233444455555555654 455565 8
Q ss_pred hHHHHHHHHHHhCccEEEEccc
Q 008512 119 VENVIRELVEEVKATSVFAEEE 140 (563)
Q Consensus 119 ~~~~l~~l~~~~~a~~V~~~~~ 140 (563)
+.+.|.+.+++.+++.|+.-..
T Consensus 91 ~~~~I~~~a~~~~~dlIV~Gs~ 112 (146)
T cd01989 91 VAKAIVEYVADHGITKLVMGAS 112 (146)
T ss_pred HHHHHHHHHHHcCCCEEEEecc
Confidence 9999999999999998887654
No 230
>PF08237 PE-PPE: PE-PPE domain; InterPro: IPR013228 The human pathogen Mycobacterium tuberculosis harbours a large number of genes that encode proteins whose N-termini contain the characteristic motifs Pro-Glu (PE) or Pro-Pro-Glu (PPE). A subgroup of the PE proteins contains polymorphic GC-rich sequences (PGRS), while a subgroup of the PPE proteins contains major polymorphic tandem repeats (MPTR). The function of most of these proteins remains unknown []. However, the PE_PGRS proteins from Mycobacterium marinum are secreted by components of the ESX-5 system that belongs to the recently defined type VII secretion systems []. It has also been reported that the PE_PGRS family of proteins contains multiple calcium-binding and glycine-rich sequence motifs GGXGXD/NXUX. This sequence repeat constitutes a calcium-binding parallel beta-roll or parallel beta-helix structure and is found in RTX toxins secreted by many Gram-negative bacteria []. This domain is found C-terminal to the PE (IPR000084 from INTERPRO) and PPE (IPR000030 from INTERPRO) domains. The secondary structure of this domain is predicted to be a mixture of alpha helices and beta strands [].
Probab=78.93 E-value=3.9 Score=40.01 Aligned_cols=86 Identities=23% Similarity=0.150 Sum_probs=52.7
Q ss_pred CCEEEEEcCCCC-CC-C--CCCCcCCCHHHHHHHHHHHHHHh--CCCcEEEEEechhHHHHHHHHhc----c----Cccc
Q 008512 454 GNRVWAITLLGF-GR-S--EKPNIVYTELMWSELLRDFTVEV--VGEPVHLIGNSIGGMFLSTNLTR----G----KLYA 519 (563)
Q Consensus 454 g~~Vi~~D~~G~-G~-S--~~~~~~~~~~~~~~~l~~~l~~l--~~~~i~lvGhS~Gg~ia~~~a~~----~----~~~~ 519 (563)
|+.+..+++|.. +- + .......+..+=++.+.+.+... ..++++++|+|+|+.++..++.+ + ....
T Consensus 2 ~~~~~~V~YPa~f~P~~g~~~~t~~~Sv~~G~~~L~~ai~~~~~~~~~vvV~GySQGA~Va~~~~~~l~~~~~~~~~~l~ 81 (225)
T PF08237_consen 2 GYNVVAVDYPASFWPVTGIGSPTYDESVAEGVANLDAAIRAAIAAGGPVVVFGYSQGAVVASNVLRRLAADGDPPPDDLS 81 (225)
T ss_pred CcceEEecCCchhcCcCCCCCCccchHHHHHHHHHHHHHHhhccCCCCEEEEEECHHHHHHHHHHHHHHhcCCCCcCceE
Confidence 677888888861 11 0 01122334444455555555542 34889999999999999887643 1 2456
Q ss_pred EEEEEcCcCChHHHHHHhhh
Q 008512 520 FLLSVNYLLSRSIICRLFCC 539 (563)
Q Consensus 520 ~v~~~~~~~~~~~~~~~~~~ 539 (563)
.+++.++..+...+...+..
T Consensus 82 fVl~gnP~rp~GG~~~r~~~ 101 (225)
T PF08237_consen 82 FVLIGNPRRPNGGILARFPG 101 (225)
T ss_pred EEEecCCCCCCCcchhccCc
Confidence 67777777766666555544
No 231
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=78.68 E-value=13 Score=36.40 Aligned_cols=94 Identities=14% Similarity=0.046 Sum_probs=59.4
Q ss_pred CHHHHHHHhCCCeEEEEEECCcccccCCHhHHHHHHHHHHHHHHHHHhcCCcEEEEE--cChHH---HHHHHHHHhCccE
Q 008512 60 HLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKEQGSDLMIRF--GRVEN---VIRELVEEVKATS 134 (563)
Q Consensus 60 N~aL~~A~~~~~vl~vfi~dp~~~~~~~~~r~~Fl~~sL~~L~~~L~~~g~~L~v~~--g~~~~---~l~~l~~~~~a~~ 134 (563)
+-||+.|.+...|.+++..-+.... +..|-...+..++...+.+|++|+... |..++ .+.+.+++.+++.
T Consensus 14 ~lAl~~~~~~~~V~~L~~~~~~~~~-----s~~~h~~~~~~~~~qA~algiPl~~~~~~~~~e~~~~~l~~~l~~~gv~~ 88 (222)
T TIGR00289 14 ILALYKALEEHEVISLVGVFSENEE-----SYMFHSPNLHLTDLVAEAVGIPLIKLYTSGEEEKEVEDLAGQLGELDVEA 88 (222)
T ss_pred HHHHHHHHHcCeeEEEEEEcCCCCC-----ccccccCCHHHHHHHHHHcCCCeEEEEcCCchhHHHHHHHHHHHHcCCCE
Confidence 3467777655556777766654322 222222356677777789999998765 33333 4444456679999
Q ss_pred EEEccccChhHHHHHHHHHHHHHhcCC
Q 008512 135 VFAEEEVEYHLRQMMAIVDETLAKVSL 161 (563)
Q Consensus 135 V~~~~~~~~~~~~~d~~v~~~l~~~~i 161 (563)
|++-.-...+.+.+.+++ |.+.|+
T Consensus 89 vv~GdI~s~~qr~~~e~v---c~~~gl 112 (222)
T TIGR00289 89 LCIGAIESNYQKSRIDKV---CRELGL 112 (222)
T ss_pred EEECccccHHHHHHHHHH---HHHcCC
Confidence 998888777777776655 444554
No 232
>PRK09982 universal stress protein UspD; Provisional
Probab=78.65 E-value=18 Score=32.16 Aligned_cols=81 Identities=12% Similarity=0.077 Sum_probs=50.8
Q ss_pred CHHHHHHHhC-----CCeEEEEEECCcccc--c---CC-Hh----HHHHHHHHHHHHHHHHHhcCCcEEEEEcChHHHHH
Q 008512 60 HLGLVAASKY-----QAVVPLYVFDHRILS--R---YS-NE----MLELVIFALEDLRKSLKEQGSDLMIRFGRVENVIR 124 (563)
Q Consensus 60 N~aL~~A~~~-----~~vl~vfi~dp~~~~--~---~~-~~----r~~Fl~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~ 124 (563)
..||.+|++. ..+..+++.++.... . .. .. ......+.|+++.+.+...++...+..|+|.+.+.
T Consensus 17 ~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~G~p~~~I~ 96 (142)
T PRK09982 17 ALLVNKALELARHNDAHLTLIHIDDGLSELYPGIYFPATEDILQLLKNKSDNKLYKLTKNIQWPKTKLRIERGEMPETLL 96 (142)
T ss_pred HHHHHHHHHHHHHhCCeEEEEEEccCcchhchhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEEecCHHHHHH
Confidence 4677777532 468888898753210 0 00 01 11122233444454444445677888999999999
Q ss_pred HHHHHhCccEEEEccc
Q 008512 125 ELVEEVKATSVFAEEE 140 (563)
Q Consensus 125 ~l~~~~~a~~V~~~~~ 140 (563)
+.+++.+++.|+.-..
T Consensus 97 ~~A~~~~aDLIVmG~~ 112 (142)
T PRK09982 97 EIMQKEQCDLLVCGHH 112 (142)
T ss_pred HHHHHcCCCEEEEeCC
Confidence 9999999999988754
No 233
>TIGR03712 acc_sec_asp2 accessory Sec system protein Asp2. This protein is designated Asp2 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=78.54 E-value=7.2 Score=42.08 Aligned_cols=96 Identities=13% Similarity=-0.008 Sum_probs=60.3
Q ss_pred CeEEEEE-EeCCCC-CeEEEECCCCCChHHHH--HHHHHHhhCCCEEEEEcCCCCCCCCCCC-cCCCHHHHHHHHHHHHH
Q 008512 415 GYQIQYT-VAGKEG-PAILLVHGFGAFLEHYR--DNIYDIADGGNRVWAITLLGFGRSEKPN-IVYTELMWSELLRDFTV 489 (563)
Q Consensus 415 g~~l~y~-~~g~~~-~~vlllHG~~~~~~~~~--~~~~~l~~~g~~Vi~~D~~G~G~S~~~~-~~~~~~~~~~~l~~~l~ 489 (563)
+..+.|. ..|+-+ |..|++.|+-. .+-|. .+++.|... -.+.-|.|--|.+=.-. ..+ -+.+.+.|.+.++
T Consensus 275 reEi~yYFnPGD~KPPL~VYFSGyR~-aEGFEgy~MMk~Lg~P--fLL~~DpRleGGaFYlGs~ey-E~~I~~~I~~~L~ 350 (511)
T TIGR03712 275 RQEFIYYFNPGDFKPPLNVYFSGYRP-AEGFEGYFMMKRLGAP--FLLIGDPRLEGGAFYLGSDEY-EQGIINVIQEKLD 350 (511)
T ss_pred CCeeEEecCCcCCCCCeEEeeccCcc-cCcchhHHHHHhcCCC--eEEeeccccccceeeeCcHHH-HHHHHHHHHHHHH
Confidence 4444444 344334 46899999865 33232 445555432 23444888766552111 112 3356677777888
Q ss_pred HhCC--CcEEEEEechhHHHHHHHHhc
Q 008512 490 EVVG--EPVHLIGNSIGGMFLSTNLTR 514 (563)
Q Consensus 490 ~l~~--~~i~lvGhS~Gg~ia~~~a~~ 514 (563)
.++- ..++|-|-|||..-|+.+++.
T Consensus 351 ~LgF~~~qLILSGlSMGTfgAlYYga~ 377 (511)
T TIGR03712 351 YLGFDHDQLILSGLSMGTFGALYYGAK 377 (511)
T ss_pred HhCCCHHHeeeccccccchhhhhhccc
Confidence 8876 569999999999999999887
No 234
>PF06259 Abhydrolase_8: Alpha/beta hydrolase; InterPro: IPR010427 This is a family of uncharacterised proteins found in Actinobacteria. Computational analysis suggests that they may belong to the alpha-beta hydrolase family of enzymes, as they are predicted to form the core secondary structures and catalytic machinery common to these proteins []. Genomic context suggests that they may function as lipases, controlling the concentration of their putative phospholipid substrates.
Probab=78.49 E-value=5.5 Score=37.43 Aligned_cols=102 Identities=17% Similarity=0.175 Sum_probs=55.0
Q ss_pred CCeEEEECCCCCChHHHH--------HHHHHH------hhCCCEEEEEcCCCCCCCCC-CC---cCCCHHHHHHHHHHHH
Q 008512 427 GPAILLVHGFGAFLEHYR--------DNIYDI------ADGGNRVWAITLLGFGRSEK-PN---IVYTELMWSELLRDFT 488 (563)
Q Consensus 427 ~~~vlllHG~~~~~~~~~--------~~~~~l------~~~g~~Vi~~D~~G~G~S~~-~~---~~~~~~~~~~~l~~~l 488 (563)
..+.++++|.+.+...+. .+.+.+ ...+-.|-++-+.|+---.. .. ...--+.-+..+..|+
T Consensus 19 ~~Vav~VPG~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vAvV~WlgYdaP~~~~~~a~~~~~A~~ga~~L~~f~ 98 (177)
T PF06259_consen 19 DHVAVLVPGTGTTLDSFLGGMDDEARALRAAAARAARAAGPGGSVAVVAWLGYDAPAGGLPDAASPGYARAGAPRLARFL 98 (177)
T ss_pred CeeEEEcCCCCCCcccccchhHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcCCCCCCCccccccCchHHHHHHHHHHHHH
Confidence 457899999876543211 111111 11233555555555432100 00 0111234455566666
Q ss_pred HHhC-----CCcEEEEEechhHHHHHHHHhc-c-CcccEEEEEcCcC
Q 008512 489 VEVV-----GEPVHLIGNSIGGMFLSTNLTR-G-KLYAFLLSVNYLL 528 (563)
Q Consensus 489 ~~l~-----~~~i~lvGhS~Gg~ia~~~a~~-~-~~~~~v~~~~~~~ 528 (563)
+.+. ..++.++|||+|+.++..++.. . .....+++.++-.
T Consensus 99 ~gl~a~~~~~~~~tv~GHSYGS~v~G~A~~~~~~~vddvv~~GSPG~ 145 (177)
T PF06259_consen 99 DGLRATHGPDAHLTVVGHSYGSTVVGLAAQQGGLRVDDVVLVGSPGM 145 (177)
T ss_pred HHhhhhcCCCCCEEEEEecchhHHHHHHhhhCCCCcccEEEECCCCC
Confidence 5553 3579999999999999998877 3 3444555544433
No 235
>KOG2237 consensus Predicted serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=78.27 E-value=1.9 Score=47.64 Aligned_cols=102 Identities=13% Similarity=0.142 Sum_probs=65.4
Q ss_pred CCeEEEECCCCCCh--HHHHHHHHHHhhCCCEEEEEcCCCCCCCCCC--------CcCCCHHHHHHHHHHHHHHh--CCC
Q 008512 427 GPAILLVHGFGAFL--EHYRDNIYDIADGGNRVWAITLLGFGRSEKP--------NIVYTELMWSELLRDFTVEV--VGE 494 (563)
Q Consensus 427 ~~~vlllHG~~~~~--~~~~~~~~~l~~~g~~Vi~~D~~G~G~S~~~--------~~~~~~~~~~~~l~~~l~~l--~~~ 494 (563)
.|.+|+.+|..+-+ -.|..-...|...|+-....|.||-|.=... ....+++|+..-++.+++.- ...
T Consensus 470 ~P~LLygYGay~isl~p~f~~srl~lld~G~Vla~a~VRGGGe~G~~WHk~G~lakKqN~f~Dfia~AeyLve~gyt~~~ 549 (712)
T KOG2237|consen 470 KPLLLYGYGAYGISLDPSFRASRLSLLDRGWVLAYANVRGGGEYGEQWHKDGRLAKKQNSFDDFIACAEYLVENGYTQPS 549 (712)
T ss_pred CceEEEEecccceeeccccccceeEEEecceEEEEEeeccCcccccchhhccchhhhcccHHHHHHHHHHHHHcCCCCcc
Confidence 56666666644322 1233222334556776666799997654221 13467888887777777542 347
Q ss_pred cEEEEEechhHHHHHHHHhc-cCcccEEEEEcCcC
Q 008512 495 PVHLIGNSIGGMFLSTNLTR-GKLYAFLLSVNYLL 528 (563)
Q Consensus 495 ~i~lvGhS~Gg~ia~~~a~~-~~~~~~v~~~~~~~ 528 (563)
++.+.|.|-||.++..+.-+ |++.+++++--+++
T Consensus 550 kL~i~G~SaGGlLvga~iN~rPdLF~avia~Vpfm 584 (712)
T KOG2237|consen 550 KLAIEGGSAGGLLVGACINQRPDLFGAVIAKVPFM 584 (712)
T ss_pred ceeEecccCccchhHHHhccCchHhhhhhhcCcce
Confidence 89999999999999887765 99888777644444
No 236
>KOG4540 consensus Putative lipase essential for disintegration of autophagic bodies inside the vacuole [Intracellular trafficking, secretion, and vesicular transport; Lipid transport and metabolism]
Probab=77.99 E-value=3 Score=41.64 Aligned_cols=34 Identities=24% Similarity=0.257 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhCCCcEEEEEechhHHHHHHHHhc
Q 008512 481 SELLRDFTVEVVGEPVHLIGNSIGGMFLSTNLTR 514 (563)
Q Consensus 481 ~~~l~~~l~~l~~~~i~lvGhS~Gg~ia~~~a~~ 514 (563)
.+.+..+.+.....+|.|.|||+||.+|..+-.+
T Consensus 263 ldI~~~v~~~Ypda~iwlTGHSLGGa~AsLlG~~ 296 (425)
T KOG4540|consen 263 LDILGAVRRIYPDARIWLTGHSLGGAIASLLGIR 296 (425)
T ss_pred HHHHHHHHHhCCCceEEEeccccchHHHHHhccc
Confidence 4444455555677899999999999999887554
No 237
>COG5153 CVT17 Putative lipase essential for disintegration of autophagic bodies inside the vacuole [Intracellular trafficking and secretion / Lipid metabolism]
Probab=77.99 E-value=3 Score=41.64 Aligned_cols=34 Identities=24% Similarity=0.257 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhCCCcEEEEEechhHHHHHHHHhc
Q 008512 481 SELLRDFTVEVVGEPVHLIGNSIGGMFLSTNLTR 514 (563)
Q Consensus 481 ~~~l~~~l~~l~~~~i~lvGhS~Gg~ia~~~a~~ 514 (563)
.+.+..+.+.....+|.|.|||+||.+|..+-.+
T Consensus 263 ldI~~~v~~~Ypda~iwlTGHSLGGa~AsLlG~~ 296 (425)
T COG5153 263 LDILGAVRRIYPDARIWLTGHSLGGAIASLLGIR 296 (425)
T ss_pred HHHHHHHHHhCCCceEEEeccccchHHHHHhccc
Confidence 4444455555677899999999999999887554
No 238
>PRK15456 universal stress protein UspG; Provisional
Probab=76.40 E-value=14 Score=32.75 Aligned_cols=80 Identities=20% Similarity=0.184 Sum_probs=48.4
Q ss_pred HHHHHHHhC----CCeEEEEEECCcccc---c--CC-----HhHHHHHHHHHHHHHHHHHhcCC--cEEEEEcChHHHHH
Q 008512 61 LGLVAASKY----QAVVPLYVFDHRILS---R--YS-----NEMLELVIFALEDLRKSLKEQGS--DLMIRFGRVENVIR 124 (563)
Q Consensus 61 ~aL~~A~~~----~~vl~vfi~dp~~~~---~--~~-----~~r~~Fl~~sL~~L~~~L~~~g~--~L~v~~g~~~~~l~ 124 (563)
.||.+|.+. ..+..++++++.... . .. .....-..+.|.++.+.+...+. ..++..|++.+.+.
T Consensus 19 ~al~~A~~la~~~~~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~v~~G~~~~~I~ 98 (142)
T PRK15456 19 KAVRHAEFLAQDDGVIHLLHVLPGSASLSLHRFAADVRRFEEHLQHEAEERLQTMVSHFTIDPSRIKQHVRFGSVRDEVN 98 (142)
T ss_pred HHHHHHHHHHhcCCeEEEEEEecCcccccccccccchhhHHHHHHHHHHHHHHHHHHHhCCCCcceEEEEcCCChHHHHH
Confidence 466666532 467788888764211 0 00 01111223345555554433333 56777899999999
Q ss_pred HHHHHhCccEEEEccc
Q 008512 125 ELVEEVKATSVFAEEE 140 (563)
Q Consensus 125 ~l~~~~~a~~V~~~~~ 140 (563)
+.+++.+++.|+.-..
T Consensus 99 ~~a~~~~~DLIVmG~~ 114 (142)
T PRK15456 99 ELAEELGADVVVIGSR 114 (142)
T ss_pred HHHhhcCCCEEEEcCC
Confidence 9999999998887544
No 239
>PLN02213 sinapoylglucose-malate O-sinapoyltransferase/ carboxypeptidase
Probab=72.86 E-value=9.9 Score=39.26 Aligned_cols=75 Identities=15% Similarity=0.138 Sum_probs=46.7
Q ss_pred EEEEEcCC-CCCCCCCCC-cCC-CHHHHHHHHHHHHHH----h---CCCcEEEEEechhHHHHHHHHhc----c------
Q 008512 456 RVWAITLL-GFGRSEKPN-IVY-TELMWSELLRDFTVE----V---VGEPVHLIGNSIGGMFLSTNLTR----G------ 515 (563)
Q Consensus 456 ~Vi~~D~~-G~G~S~~~~-~~~-~~~~~~~~l~~~l~~----l---~~~~i~lvGhS~Gg~ia~~~a~~----~------ 515 (563)
+|+-+|.| |.|.|-... ..+ +-+..++++..++.. . ...+++|.|-|+||..+-.+|.. .
T Consensus 3 NvLfiDqPvGvGfSy~~~~~~~~~d~~~a~d~~~fL~~Ff~~~p~~~~~~fyI~GESYaG~YiP~la~~I~~~n~~~~~~ 82 (319)
T PLN02213 3 NIIFLDQPVGSGFSYSKTPIDKTGDISEVKRTHEFLQKWLSRHPQYFSNPLYVVGDSYSGMIVPALVQEISQGNYICCEP 82 (319)
T ss_pred cEEEecCCCCCCCCCCCCCCCccccHHHHHHHHHHHHHHHHhCcccccCCeEEEeeccccchHHHHHHHHHhhcccccCC
Confidence 68889987 899985432 111 212223455554443 2 34789999999999988777653 1
Q ss_pred C-cccEEEEEcCcCCh
Q 008512 516 K-LYAFLLSVNYLLSR 530 (563)
Q Consensus 516 ~-~~~~v~~~~~~~~~ 530 (563)
. -.+.+++.++....
T Consensus 83 ~inLkGi~IGNg~t~~ 98 (319)
T PLN02213 83 PINLQGYMLGNPVTYM 98 (319)
T ss_pred ceeeeEEEeCCCCCCc
Confidence 1 24577777775543
No 240
>COG1505 Serine proteases of the peptidase family S9A [Amino acid transport and metabolism]
Probab=71.48 E-value=4.6 Score=44.55 Aligned_cols=117 Identities=20% Similarity=0.210 Sum_probs=76.2
Q ss_pred ECCeEEEEEEeCC-----CCCeEEEECCCCC--ChHHHHHHHHHHhhCCCEEEEEcCCCCCCCCCC--------CcCCCH
Q 008512 413 WNGYQIQYTVAGK-----EGPAILLVHGFGA--FLEHYRDNIYDIADGGNRVWAITLLGFGRSEKP--------NIVYTE 477 (563)
Q Consensus 413 ~~g~~l~y~~~g~-----~~~~vlllHG~~~--~~~~~~~~~~~l~~~g~~Vi~~D~~G~G~S~~~--------~~~~~~ 477 (563)
-||.+|.|...+. +.|++|+--|... -.-.|...+....++|..-+..+.||-|+=... .....+
T Consensus 402 kDGT~IPYFiv~K~~~~d~~pTll~aYGGF~vsltP~fs~~~~~WLerGg~~v~ANIRGGGEfGp~WH~Aa~k~nrq~vf 481 (648)
T COG1505 402 KDGTRIPYFIVRKGAKKDENPTLLYAYGGFNISLTPRFSGSRKLWLERGGVFVLANIRGGGEFGPEWHQAGMKENKQNVF 481 (648)
T ss_pred CCCccccEEEEecCCcCCCCceEEEeccccccccCCccchhhHHHHhcCCeEEEEecccCCccCHHHHHHHhhhcchhhh
Confidence 3899999977641 2455544443322 223455555555666888888899998764321 123456
Q ss_pred HHHHHHHHHHHHHh--CCCcEEEEEechhHHHHHHHH-hccCcccEEEEEcCcCC
Q 008512 478 LMWSELLRDFTVEV--VGEPVHLIGNSIGGMFLSTNL-TRGKLYAFLLSVNYLLS 529 (563)
Q Consensus 478 ~~~~~~l~~~l~~l--~~~~i~lvGhS~Gg~ia~~~a-~~~~~~~~v~~~~~~~~ 529 (563)
+|+.....+++.+- ..+++.+.|-|-||.++..+. ++|+...++++--++.+
T Consensus 482 dDf~AVaedLi~rgitspe~lgi~GgSNGGLLvg~alTQrPelfgA~v~evPllD 536 (648)
T COG1505 482 DDFIAVAEDLIKRGITSPEKLGIQGGSNGGLLVGAALTQRPELFGAAVCEVPLLD 536 (648)
T ss_pred HHHHHHHHHHHHhCCCCHHHhhhccCCCCceEEEeeeccChhhhCceeeccchhh
Confidence 67776666666542 236799999999999885554 45999988888666553
No 241
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=70.87 E-value=24 Score=33.69 Aligned_cols=90 Identities=19% Similarity=0.093 Sum_probs=52.6
Q ss_pred HHHHHHHhC-CCeEEEEEECCcccccCCHhHHHHHHHHHHHHHHHHHhcCCcEEEEE--cC---hHHHHHHHHHHh---C
Q 008512 61 LGLVAASKY-QAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKEQGSDLMIRF--GR---VENVIRELVEEV---K 131 (563)
Q Consensus 61 ~aL~~A~~~-~~vl~vfi~dp~~~~~~~~~r~~Fl~~sL~~L~~~L~~~g~~L~v~~--g~---~~~~l~~l~~~~---~ 131 (563)
-+|+.|.+. ..++++++.-+.... +..|-...+..+++..+.+|+++++.. ++ -.+.+.+.+++. +
T Consensus 14 ~al~~a~~~G~~v~~l~~~~~~~~~-----~~~~h~~~~e~~~~~A~~lgipl~~i~~~~~~e~~~~~l~~~l~~~~~~g 88 (194)
T cd01994 14 YALYRALEEGHEVVALLNLTPEEGS-----SMMYHTVNHELLELQAEAMGIPLIRIEISGEEEDEVEDLKELLRKLKEEG 88 (194)
T ss_pred HHHHHHHHcCCEEEEEEEEecCCCC-----cccccccCHHHHHHHHHHcCCcEEEEeCCCCchHHHHHHHHHHHHHHHcC
Confidence 355666665 468888877654321 111111356667777788999998875 22 222332333322 5
Q ss_pred ccEEEEccccChhHHHHHHHHHHH
Q 008512 132 ATSVFAEEEVEYHLRQMMAIVDET 155 (563)
Q Consensus 132 a~~V~~~~~~~~~~~~~d~~v~~~ 155 (563)
++.|++-.-...+.+.+.+++.+.
T Consensus 89 ~~~vv~G~i~sd~~~~~~e~~~~~ 112 (194)
T cd01994 89 VDAVVFGAILSEYQRTRVERVCER 112 (194)
T ss_pred CCEEEECccccHHHHHHHHHHHHH
Confidence 888887777777777776665443
No 242
>PF05705 DUF829: Eukaryotic protein of unknown function (DUF829); InterPro: IPR008547 This signature identifies Transmembrane protein 53, that have no known function but are predicted to be integral membrane proteins.
Probab=70.66 E-value=20 Score=35.01 Aligned_cols=81 Identities=16% Similarity=0.110 Sum_probs=50.5
Q ss_pred eEEEECCCCCCh-HHHHHHHHHHhhCCCEEEEEcCCCCCCCCCCCcCCCHHHHHHHHHHHHHHhCC---CcEEEEEechh
Q 008512 429 AILLVHGFGAFL-EHYRDNIYDIADGGNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFTVEVVG---EPVHLIGNSIG 504 (563)
Q Consensus 429 ~vlllHG~~~~~-~~~~~~~~~l~~~g~~Vi~~D~~G~G~S~~~~~~~~~~~~~~~l~~~l~~l~~---~~i~lvGhS~G 504 (563)
++|++=||.+.. ....+..+...+.|++++.+-.+-....... ..+...++.+.+.+..... .++.+-.+|.|
T Consensus 1 plvvl~gW~gA~~~hl~KY~~~Y~~~g~~il~~~~~~~~~~~~~---~~~~~~~~~l~~~l~~~~~~~~~~il~H~FSnG 77 (240)
T PF05705_consen 1 PLVVLLGWMGAKPKHLAKYSDLYQDPGFDILLVTSPPADFFWPS---KRLAPAADKLLELLSDSQSASPPPILFHSFSNG 77 (240)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEeCCHHHHeeec---cchHHHHHHHHHHhhhhccCCCCCEEEEEEECc
Confidence 467777987654 4555777777778999999865532211111 2333444444455444333 28999999998
Q ss_pred HHHHHHHH
Q 008512 505 GMFLSTNL 512 (563)
Q Consensus 505 g~ia~~~a 512 (563)
|...+...
T Consensus 78 G~~~~~~l 85 (240)
T PF05705_consen 78 GSFLYSQL 85 (240)
T ss_pred hHHHHHHH
Confidence 88776553
No 243
>PRK15005 universal stress protein F; Provisional
Probab=70.28 E-value=45 Score=29.25 Aligned_cols=80 Identities=15% Similarity=0.092 Sum_probs=48.2
Q ss_pred HHHHHHHh----C-CCeEEEEEECCccc-cc--C-----CHh---HHHHHHHHHHHHHHHHHhcC--CcEEEEEcChHHH
Q 008512 61 LGLVAASK----Y-QAVVPLYVFDHRIL-SR--Y-----SNE---MLELVIFALEDLRKSLKEQG--SDLMIRFGRVENV 122 (563)
Q Consensus 61 ~aL~~A~~----~-~~vl~vfi~dp~~~-~~--~-----~~~---r~~Fl~~sL~~L~~~L~~~g--~~L~v~~g~~~~~ 122 (563)
.||.+|.+ . .++..++++++... .. . ... ...-..+.|+++.+.+...+ +..++..|+|.+.
T Consensus 19 ~a~~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~G~p~~~ 98 (144)
T PRK15005 19 RVISHVEAEAKIDDAEVHFLTVIPSLPYYASLGLAYSAELPAMDDLKAEAKSQLEEIIKKFKLPTDRVHVHVEEGSPKDR 98 (144)
T ss_pred HHHHHHHHHHhccCCeEEEEEEEccCcccccccccccccchHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeCCCHHHH
Confidence 46666653 1 56888888875311 00 0 011 11112234444444444333 3567889999999
Q ss_pred HHHHHHHhCccEEEEccc
Q 008512 123 IRELVEEVKATSVFAEEE 140 (563)
Q Consensus 123 l~~l~~~~~a~~V~~~~~ 140 (563)
+.+.+++.+++.|+.-..
T Consensus 99 I~~~a~~~~~DLIV~Gs~ 116 (144)
T PRK15005 99 ILELAKKIPADMIIIASH 116 (144)
T ss_pred HHHHHHHcCCCEEEEeCC
Confidence 999999999998888644
No 244
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=69.91 E-value=42 Score=28.60 Aligned_cols=78 Identities=17% Similarity=0.154 Sum_probs=50.8
Q ss_pred CCHHHHHHHhC-----CCeEEEEEECCcccccCCHhHHHHHHHHHHHHHHHHHhcCCcEEEE-EcChHHHHHHHHHHhCc
Q 008512 59 DHLGLVAASKY-----QAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKEQGSDLMIR-FGRVENVIRELVEEVKA 132 (563)
Q Consensus 59 DN~aL~~A~~~-----~~vl~vfi~dp~~~~~~~~~r~~Fl~~sL~~L~~~L~~~g~~L~v~-~g~~~~~l~~l~~~~~a 132 (563)
...+|..|+.. .++..+++.++.... ..... . +-|+.+.+.+++.+++..+. .|++.+.+.+.++++++
T Consensus 12 s~~al~~a~~la~~~~~~l~ll~v~~~~~~~-~~~~~-~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~ 86 (124)
T cd01987 12 AERLIRRAARLADRLKAPWYVVYVETPRLNR-LSEAE-R---RRLAEALRLAEELGAEVVTLPGDDVAEAIVEFAREHNV 86 (124)
T ss_pred hHHHHHHHHHHHHHhCCCEEEEEEecCcccc-CCHHH-H---HHHHHHHHHHHHcCCEEEEEeCCcHHHHHHHHHHHcCC
Confidence 34566666532 578899998865321 11221 1 33455556666677766554 46888999999999999
Q ss_pred cEEEEcccc
Q 008512 133 TSVFAEEEV 141 (563)
Q Consensus 133 ~~V~~~~~~ 141 (563)
+.|+.-..-
T Consensus 87 dllviG~~~ 95 (124)
T cd01987 87 TQIVVGKSR 95 (124)
T ss_pred CEEEeCCCC
Confidence 988876553
No 245
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=69.17 E-value=57 Score=27.86 Aligned_cols=82 Identities=13% Similarity=0.001 Sum_probs=53.5
Q ss_pred CHHHHHHHhC-----CCeEEEEEECCcccccC--CHhHHHHHHHHHHHHHHHHHhcCCcEEEE---EcChHHHHHHHHHH
Q 008512 60 HLGLVAASKY-----QAVVPLYVFDHRILSRY--SNEMLELVIFALEDLRKSLKEQGSDLMIR---FGRVENVIRELVEE 129 (563)
Q Consensus 60 N~aL~~A~~~-----~~vl~vfi~dp~~~~~~--~~~r~~Fl~~sL~~L~~~L~~~g~~L~v~---~g~~~~~l~~l~~~ 129 (563)
..+|..|... .++..++++++...... ......-..+.+..+.+.+++.|++.... .|++.+.+.+++++
T Consensus 13 ~~~l~~a~~la~~~~~~v~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~~~a~~ 92 (132)
T cd01988 13 RDLLELAAALARAQNGEIIPLNVIEVPNHSSPSQLEVNVQRARKLLRQAERIAASLGVPVHTIIRIDHDIASGILRTAKE 92 (132)
T ss_pred HHHHHHHHHHhhcCCCeEEEEEEEecCCCCCcchhHHHHHHHHHHHHHHHHHhhhcCCceEEEEEecCCHHHHHHHHHHh
Confidence 3466666532 57888999886431110 11122234466777777777888874432 47899999999999
Q ss_pred hCccEEEEcccc
Q 008512 130 VKATSVFAEEEV 141 (563)
Q Consensus 130 ~~a~~V~~~~~~ 141 (563)
.+++.|++-..-
T Consensus 93 ~~~dlIV~G~~~ 104 (132)
T cd01988 93 RQADLIIMGWHG 104 (132)
T ss_pred cCCCEEEEecCC
Confidence 999988876653
No 246
>COG2382 Fes Enterochelin esterase and related enzymes [Inorganic ion transport and metabolism]
Probab=68.30 E-value=7.3 Score=39.48 Aligned_cols=38 Identities=21% Similarity=0.226 Sum_probs=32.5
Q ss_pred CcEEEEEechhHHHHHHHHhc-cCcccEEEEEcCcCChH
Q 008512 494 EPVHLIGNSIGGMFLSTNLTR-GKLYAFLLSVNYLLSRS 531 (563)
Q Consensus 494 ~~i~lvGhS~Gg~ia~~~a~~-~~~~~~v~~~~~~~~~~ 531 (563)
..-+|.|.|+||.+++..+.+ |+.++.|+..++.....
T Consensus 177 ~~r~L~G~SlGG~vsL~agl~~Pe~FG~V~s~Sps~~~~ 215 (299)
T COG2382 177 DGRVLAGDSLGGLVSLYAGLRHPERFGHVLSQSGSFWWT 215 (299)
T ss_pred CCcEEeccccccHHHHHHHhcCchhhceeeccCCccccC
Confidence 457899999999999999988 99999999988866543
No 247
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=68.18 E-value=36 Score=33.30 Aligned_cols=92 Identities=13% Similarity=0.088 Sum_probs=56.7
Q ss_pred CHHHHHHHhCCCeEEEEEECCcccccCCHhHHHHHHH--HHHHHHHHHHhcCCcEEEEE--c---ChHHHHHHHHHHhCc
Q 008512 60 HLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIF--ALEDLRKSLKEQGSDLMIRF--G---RVENVIRELVEEVKA 132 (563)
Q Consensus 60 N~aL~~A~~~~~vl~vfi~dp~~~~~~~~~r~~Fl~~--sL~~L~~~L~~~g~~L~v~~--g---~~~~~l~~l~~~~~a 132 (563)
+-||+.|.+...|+++...-|.... + ++++ .+.-++.+-+.+|++|+... + +-.+.+.++.++.++
T Consensus 14 ~~al~~a~~~~~v~~L~t~~~~~~~-----s--~~~H~~~~~~~~~qA~algipl~~~~~~~~~e~~~e~l~~~l~~~gv 86 (223)
T TIGR00290 14 CLALYHALKEHEVISLVNIMPENEE-----S--YMFHGVNAHLTDLQAESIGIPLIKLYTEGTEEDEVEELKGILHTLDV 86 (223)
T ss_pred HHHHHHHHHhCeeEEEEEEecCCCC-----c--ccccccCHHHHHHHHHHcCCCeEEeecCCCccHHHHHHHHHHHHcCC
Confidence 4578888765445666555443211 1 2333 34445555678899997643 2 344555556666799
Q ss_pred cEEEEccccChhHHHHHHHHHHHHHhcCC
Q 008512 133 TSVFAEEEVEYHLRQMMAIVDETLAKVSL 161 (563)
Q Consensus 133 ~~V~~~~~~~~~~~~~d~~v~~~l~~~~i 161 (563)
+.|++-.-...+.+.+.+++ |.+.|+
T Consensus 87 ~~vv~GdI~s~~qr~~~e~v---~~~lgl 112 (223)
T TIGR00290 87 EAVVFGAIYSEYQKTRIERV---CRELGL 112 (223)
T ss_pred CEEEECCcccHHHHHHHHHH---HHhcCC
Confidence 99999888877777776655 444444
No 248
>KOG3253 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=67.52 E-value=4.3 Score=44.66 Aligned_cols=93 Identities=15% Similarity=0.104 Sum_probs=52.4
Q ss_pred CCeEEEECCCC--CChHHHHHHH-HHHhhCC--CEEEEEcCCC-CCCCCCCCcCCCHHHHHHHHHHHH--------HHhC
Q 008512 427 GPAILLVHGFG--AFLEHYRDNI-YDIADGG--NRVWAITLLG-FGRSEKPNIVYTELMWSELLRDFT--------VEVV 492 (563)
Q Consensus 427 ~~~vlllHG~~--~~~~~~~~~~-~~l~~~g--~~Vi~~D~~G-~G~S~~~~~~~~~~~~~~~l~~~l--------~~l~ 492 (563)
.|.+|++||.+ .+..+|.... ..|.-.| ..|-+||++- .| +.++...++.+..+. .++.
T Consensus 176 spl~i~aps~p~ap~tSd~~~~wqs~lsl~gevvev~tfdl~n~ig-------G~nI~h~ae~~vSf~r~kvlei~gefp 248 (784)
T KOG3253|consen 176 SPLAIKAPSTPLAPKTSDRMWSWQSRLSLKGEVVEVPTFDLNNPIG-------GANIKHAAEYSVSFDRYKVLEITGEFP 248 (784)
T ss_pred CceEEeccCCCCCCccchHHHhHHHHHhhhceeeeeccccccCCCC-------CcchHHHHHHHHHHhhhhhhhhhccCC
Confidence 56789999987 2333333222 2222222 4566777762 22 123333333333333 2344
Q ss_pred CCcEEEEEechhHHHHHHHHhc--cCcccEEEEEcC
Q 008512 493 GEPVHLIGNSIGGMFLSTNLTR--GKLYAFLLSVNY 526 (563)
Q Consensus 493 ~~~i~lvGhS~Gg~ia~~~a~~--~~~~~~v~~~~~ 526 (563)
..+|+|+|.|||+.++...... ...+..++++..
T Consensus 249 ha~IiLvGrsmGAlVachVSpsnsdv~V~~vVCigy 284 (784)
T KOG3253|consen 249 HAPIILVGRSMGALVACHVSPSNSDVEVDAVVCIGY 284 (784)
T ss_pred CCceEEEecccCceeeEEeccccCCceEEEEEEecc
Confidence 5889999999998877666543 334777777655
No 249
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=67.09 E-value=58 Score=27.21 Aligned_cols=71 Identities=27% Similarity=0.255 Sum_probs=47.7
Q ss_pred CCeEEEEEECCccccc--CCHhHHHHHHHHHHHHHHHHHhcCCcE--EEEEcChHHHHHHHHHHhCccEEEEccc
Q 008512 70 QAVVPLYVFDHRILSR--YSNEMLELVIFALEDLRKSLKEQGSDL--MIRFGRVENVIRELVEEVKATSVFAEEE 140 (563)
Q Consensus 70 ~~vl~vfi~dp~~~~~--~~~~r~~Fl~~sL~~L~~~L~~~g~~L--~v~~g~~~~~l~~l~~~~~a~~V~~~~~ 140 (563)
.++..+|+.++..... .......-..+.|.++.+.+...|+++ .+..|++.+.+.+.+++.+++.|+....
T Consensus 28 ~~i~~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~dlvvig~~ 102 (130)
T cd00293 28 AELVLLHVVDPPPSSAAELAELLEEEARALLEALREALAEAGVKVETVVLEGDPAEAILEAAEELGADLIVMGSR 102 (130)
T ss_pred CEEEEEEEecCCCCcchhHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHcCCCEEEEcCC
Confidence 5788899987643210 001122234466777776666677775 5557888899999999999998888654
No 250
>PRK10116 universal stress protein UspC; Provisional
Probab=64.94 E-value=96 Score=27.07 Aligned_cols=84 Identities=11% Similarity=0.092 Sum_probs=49.6
Q ss_pred cCCHHHHHHHhC-----CCeEEEEEECCcccc-cCC-----HhHHHHHHHHHHHHHHHHHhcCCc---EEEEEcChHHHH
Q 008512 58 DDHLGLVAASKY-----QAVVPLYVFDHRILS-RYS-----NEMLELVIFALEDLRKSLKEQGSD---LMIRFGRVENVI 123 (563)
Q Consensus 58 ~DN~aL~~A~~~-----~~vl~vfi~dp~~~~-~~~-----~~r~~Fl~~sL~~L~~~L~~~g~~---L~v~~g~~~~~l 123 (563)
..+.+|..|+.. ..+..++++++.... ... ..+....-+..+.|++...+.|++ .++..|++.+.+
T Consensus 15 ~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~G~~~~~I 94 (142)
T PRK10116 15 ESQQLLAKAVSIARPVNGKISLITLASDPEMYNQFAAPMLEDLRSVMQEETQSFLDKLIQDADYPIEKTFIAYGELSEHI 94 (142)
T ss_pred chHHHHHHHHHHHHHhCCEEEEEEEccCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEecCCHHHHH
Confidence 446888888642 367777777653211 011 111111112222333333455653 466689999999
Q ss_pred HHHHHHhCccEEEEcccc
Q 008512 124 RELVEEVKATSVFAEEEV 141 (563)
Q Consensus 124 ~~l~~~~~a~~V~~~~~~ 141 (563)
.+.+++.+++.|+....-
T Consensus 95 ~~~a~~~~~DLiV~g~~~ 112 (142)
T PRK10116 95 LEVCRKHHFDLVICGNHN 112 (142)
T ss_pred HHHHHHhCCCEEEEcCCc
Confidence 999999999999886553
No 251
>PF05277 DUF726: Protein of unknown function (DUF726); InterPro: IPR007941 This family consists of several uncharacterised eukaryotic proteins.
Probab=61.01 E-value=24 Score=36.84 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=18.9
Q ss_pred CCCcEEEEEechhHHHHHHHHh
Q 008512 492 VGEPVHLIGNSIGGMFLSTNLT 513 (563)
Q Consensus 492 ~~~~i~lvGhS~Gg~ia~~~a~ 513 (563)
+..||.|+|||+|+.+....+.
T Consensus 218 G~RpVtLvG~SLGarvI~~cL~ 239 (345)
T PF05277_consen 218 GERPVTLVGHSLGARVIYYCLL 239 (345)
T ss_pred CCCceEEEeecccHHHHHHHHH
Confidence 5578999999999999987654
No 252
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=59.18 E-value=52 Score=32.00 Aligned_cols=92 Identities=17% Similarity=0.088 Sum_probs=60.6
Q ss_pred CHHHHHHHhC-CCeEEEEEECCcccccCCHhHHHHHHHHHHHHHHHHHhcCCcEEEEE--c---ChHHHHHHHHHHhCcc
Q 008512 60 HLGLVAASKY-QAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKEQGSDLMIRF--G---RVENVIRELVEEVKAT 133 (563)
Q Consensus 60 N~aL~~A~~~-~~vl~vfi~dp~~~~~~~~~r~~Fl~~sL~~L~~~L~~~g~~L~v~~--g---~~~~~l~~l~~~~~a~ 133 (563)
|-||+.|.+. ..|..+.++-|..... +.|-.-.+.-....-+..|++++... | +-.+.+.++.+.++++
T Consensus 14 ~~Al~~a~~~G~eV~~Ll~~~p~~~dS-----~m~H~~n~~~~~~~Ae~~gi~l~~~~~~g~~e~eve~L~~~l~~l~~d 88 (223)
T COG2102 14 FYALYLALEEGHEVVYLLTVKPENGDS-----YMFHTPNLELAELQAEAMGIPLVTFDTSGEEEREVEELKEALRRLKVD 88 (223)
T ss_pred HHHHHHHHHcCCeeEEEEEEecCCCCe-----eeeeccchHHHHHHHHhcCCceEEEecCccchhhHHHHHHHHHhCccc
Confidence 6789999987 6788888887754321 11111222333333367799987764 3 2345566677788999
Q ss_pred EEEEccccChhHHHHHHHHHHHH
Q 008512 134 SVFAEEEVEYHLRQMMAIVDETL 156 (563)
Q Consensus 134 ~V~~~~~~~~~~~~~d~~v~~~l 156 (563)
.|+.-.-+..+.+.|.++|.+.+
T Consensus 89 ~iv~GaI~s~yqk~rve~lc~~l 111 (223)
T COG2102 89 GIVAGAIASEYQKERVERLCEEL 111 (223)
T ss_pred EEEEchhhhHHHHHHHHHHHHHh
Confidence 99999888888888877775543
No 253
>PF08259 Periviscerokin: Periviscerokinin family; InterPro: IPR013231 Perviscerokinin neuropeptides are found in the abdominal perisympathetic organs of insects. They mediate visceral muscle contractile activity (myotropic activity). CAPA, which are in the periviscerokinin and pyrokinin peptide families, has potential medical importance. This is due to its myotropic effects on, for example, heart muscles and due to its occurrence in the Ixodoidea (ticks), which are important vectors in the transmission of many animal diseases []. These peptides also have a strong diuretic or anti-diuretic effect, suggesting they have significant medical implications [].
Probab=56.08 E-value=4.6 Score=19.65 Aligned_cols=7 Identities=71% Similarity=1.341 Sum_probs=6.0
Q ss_pred ccccccc
Q 008512 2 ALISFPR 8 (563)
Q Consensus 2 ~~~~~~~ 8 (563)
.||+|||
T Consensus 4 GlI~fpR 10 (11)
T PF08259_consen 4 GLIPFPR 10 (11)
T ss_pred cccccCC
Confidence 5899998
No 254
>COG4553 DepA Poly-beta-hydroxyalkanoate depolymerase [Lipid metabolism]
Probab=54.67 E-value=1.1e+02 Score=31.08 Aligned_cols=98 Identities=6% Similarity=0.028 Sum_probs=67.2
Q ss_pred CCeEEEECCCCCChH-HHHHHHHHHhhCCCEEEEEcCCCCCCCCCCCcCCCHHHHHHHHHHHHHHhCCCcEEEEEechhH
Q 008512 427 GPAILLVHGFGAFLE-HYRDNIYDIADGGNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFTVEVVGEPVHLIGNSIGG 505 (563)
Q Consensus 427 ~~~vlllHG~~~~~~-~~~~~~~~l~~~g~~Vi~~D~~G~G~S~~~~~~~~~~~~~~~l~~~l~~l~~~~i~lvGhS~Gg 505 (563)
.|.||++--++|+.. ..+..++.|.. ...|+.-|+--.-...-....++++|+++.+.+++..+|.. +++++-+.-+
T Consensus 103 dPkvLivapmsGH~aTLLR~TV~alLp-~~~vyitDW~dAr~Vp~~~G~FdldDYIdyvie~~~~~Gp~-~hv~aVCQP~ 180 (415)
T COG4553 103 DPKVLIVAPMSGHYATLLRGTVEALLP-YHDVYITDWVDARMVPLEAGHFDLDDYIDYVIEMINFLGPD-AHVMAVCQPT 180 (415)
T ss_pred CCeEEEEecccccHHHHHHHHHHHhcc-ccceeEeeccccceeecccCCccHHHHHHHHHHHHHHhCCC-CcEEEEecCC
Confidence 457888888888754 55577888877 47899999875544434446789999999999999999865 6777766665
Q ss_pred HHHHHHH-----hc-cCcccEEEEEcC
Q 008512 506 MFLSTNL-----TR-GKLYAFLLSVNY 526 (563)
Q Consensus 506 ~ia~~~a-----~~-~~~~~~v~~~~~ 526 (563)
.-.+.++ .. |.....+.+..+
T Consensus 181 vPvLAAisLM~~~~~p~~PssMtlmGg 207 (415)
T COG4553 181 VPVLAAISLMEEDGDPNVPSSMTLMGG 207 (415)
T ss_pred chHHHHHHHHHhcCCCCCCceeeeecC
Confidence 5443332 22 445555555443
No 255
>KOG2029 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.25 E-value=18 Score=39.97 Aligned_cols=20 Identities=35% Similarity=0.717 Sum_probs=16.4
Q ss_pred CCcEEEEEechhHHHHHHHH
Q 008512 493 GEPVHLIGNSIGGMFLSTNL 512 (563)
Q Consensus 493 ~~~i~lvGhS~Gg~ia~~~a 512 (563)
..+|+-+||||||.++-.++
T Consensus 525 ~RPivwI~HSmGGLl~K~lL 544 (697)
T KOG2029|consen 525 DRPIVWIGHSMGGLLAKKLL 544 (697)
T ss_pred CCceEEEecccchHHHHHHH
Confidence 36899999999999985554
No 256
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=52.81 E-value=73 Score=26.68 Aligned_cols=53 Identities=28% Similarity=0.405 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHhcCCcEE---------------EEEcChHHHHHHHHHHhCccEEEEccccChhHHHH
Q 008512 95 IFALEDLRKSLKEQGSDLM---------------IRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQM 148 (563)
Q Consensus 95 ~~sL~~L~~~L~~~g~~L~---------------v~~g~~~~~l~~l~~~~~a~~V~~~~~~~~~~~~~ 148 (563)
-++|.+|..-++..|+..+ +-.|.. +.+.++++..+++.|+++.+..|...+.
T Consensus 7 ~~~l~El~~L~~t~g~~vv~~~~q~~~~~~p~~~iG~GK~-eei~~~~~~~~~d~vvfd~~Lsp~Q~rN 74 (95)
T PF13167_consen 7 EESLEELEELAETAGYEVVGTVVQKRRKPDPKTYIGSGKV-EEIKELIEELDADLVVFDNELSPSQQRN 74 (95)
T ss_pred HHHHHHHHHHHHHCCCeEEEEEEecCCCCCcceeechhHH-HHHHHHHhhcCCCEEEECCCCCHHHHHH
Confidence 4778888888888887432 223444 5677789999999999999987766553
No 257
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=52.48 E-value=1.2e+02 Score=26.61 Aligned_cols=41 Identities=12% Similarity=0.206 Sum_probs=30.3
Q ss_pred HHHHHHHhcCCcE---EEEEcChHHHHHHHHHHhCccEEEEccc
Q 008512 100 DLRKSLKEQGSDL---MIRFGRVENVIRELVEEVKATSVFAEEE 140 (563)
Q Consensus 100 ~L~~~L~~~g~~L---~v~~g~~~~~l~~l~~~~~a~~V~~~~~ 140 (563)
.|++.+++.|+.. ++..|+|.+.+.+.+++.+++.|+.-..
T Consensus 69 ~l~~~~~~~~~~~~~~~~~~G~p~~~I~~~a~~~~~DLIV~Gs~ 112 (144)
T PRK15118 69 ALTELSTNAGYPITETLSGSGDLGQVLVDAIKKYDMDLVVCGHH 112 (144)
T ss_pred HHHHHHHhCCCCceEEEEEecCHHHHHHHHHHHhCCCEEEEeCc
Confidence 3444445566653 4457999999999999999999888555
No 258
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=50.49 E-value=34 Score=32.18 Aligned_cols=45 Identities=11% Similarity=0.183 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEcChHHHHHHHHHHhCccEEEEc
Q 008512 94 VIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAE 138 (563)
Q Consensus 94 l~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~a~~V~~~ 138 (563)
+..++.++-+.|++.|.++.|..+.+...+..+++..+++.++.+
T Consensus 88 ~~~~~~~~l~~l~~~g~~v~ivS~s~~~~v~~~~~~lg~~~~~~~ 132 (202)
T TIGR01490 88 LYPEARDLIRWHKAEGHTIVLVSASLTILVKPLARILGIDNAIGT 132 (202)
T ss_pred ccHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHcCCcceEec
Confidence 456777777888899999999999999999999999999887765
No 259
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=49.44 E-value=34 Score=32.21 Aligned_cols=61 Identities=18% Similarity=0.168 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHhcCCcEEEEEcChHHHHHHHHHHhCccE--EEEccccChhHHHHHHHHHHHHH
Q 008512 96 FALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATS--VFAEEEVEYHLRQMMAIVDETLA 157 (563)
Q Consensus 96 ~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~a~~--V~~~~~~~~~~~~~d~~v~~~l~ 157 (563)
..+.++-++|++.|+++.++.||.......++++.++.. |+......|..+-. ..+.+.|+
T Consensus 130 ~~~~~~l~~L~~~Gi~~~i~TGD~~~~a~~~~~~lgi~~~~v~a~~~~kP~~k~~-~~~i~~l~ 192 (215)
T PF00702_consen 130 PGAKEALQELKEAGIKVAILTGDNESTASAIAKQLGIFDSIVFARVIGKPEPKIF-LRIIKELQ 192 (215)
T ss_dssp TTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTTSCSEEEEESHETTTHHHHH-HHHHHHHT
T ss_pred hhhhhhhhhhhccCcceeeeeccccccccccccccccccccccccccccccchhH-HHHHHHHh
Confidence 456677777888899999999999999999999999954 44443113444422 33444454
No 260
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=48.37 E-value=1e+02 Score=25.97 Aligned_cols=31 Identities=26% Similarity=0.349 Sum_probs=26.8
Q ss_pred cEEEEEcChHHHHHHHHHHhCccEEEEcccc
Q 008512 111 DLMIRFGRVENVIRELVEEVKATSVFAEEEV 141 (563)
Q Consensus 111 ~L~v~~g~~~~~l~~l~~~~~a~~V~~~~~~ 141 (563)
...+..|++.+.+.+++++.+++.|+....-
T Consensus 82 ~~~~~~~~~~~~i~~~~~~~~~dliv~G~~~ 112 (140)
T PF00582_consen 82 EVVIESGDVADAIIEFAEEHNADLIVMGSRG 112 (140)
T ss_dssp EEEEEESSHHHHHHHHHHHTTCSEEEEESSS
T ss_pred EEEEEeeccchhhhhccccccceeEEEeccC
Confidence 4666789999999999999999999887665
No 261
>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal. The structure of Q8U2K6 from SWISSPROT from Pyrococcus furiosus has been resolved to 2.7A and is suggested to be a putative N-type pytophosphatase. In some members of the family e.g. Q12429 from SWISSPROT, this domain is associated with IPR006175 from INTERPRO, another domain of unknown function. Proteins with this uncharacterised domain include two apparent ortholog families in the archaea, one of which is universal among the first four completed archaeal genomes. The domain comprises the full length of the archaeal proteins and the first third of fungal proteins.; PDB: 3RK0_A 3RK1_A 3RJZ_A 2D13_D.
Probab=45.48 E-value=27 Score=34.03 Aligned_cols=91 Identities=18% Similarity=0.138 Sum_probs=47.4
Q ss_pred HHHHHHHhCCCeEEEEEECCcccccCCHhHHHHHHHH--HHHHHHHHHhcCCcEEEEE-----cChHHHHHHHHHHhCcc
Q 008512 61 LGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFA--LEDLRKSLKEQGSDLMIRF-----GRVENVIRELVEEVKAT 133 (563)
Q Consensus 61 ~aL~~A~~~~~vl~vfi~dp~~~~~~~~~r~~Fl~~s--L~~L~~~L~~~g~~L~v~~-----g~~~~~l~~l~~~~~a~ 133 (563)
-||+.|.+..+|.++..+-|.... + +++++ +.-++.+-+.+|+||+... .+-.+.+.++.++.+++
T Consensus 15 lAl~~a~~~~~v~~L~t~~~~~~~-----s--~~~H~~~~~~~~~qA~algipl~~~~~~g~~~~~~~~l~~~l~~~~v~ 87 (218)
T PF01902_consen 15 LALYRALRQHEVVCLLTMVPEEED-----S--YMFHGVNIELIEAQAEALGIPLIEIPTSGDEEDYVEDLKEALKELKVE 87 (218)
T ss_dssp HHHHHHHHT-EEEEEEEEEESTTT--------SSS-STTGTCHHHHHHHHT--EEEEEE---CCCHHHHHHHHHCTC--S
T ss_pred HHHHHHHHhCCccEEEEeccCCCC-----c--ccccccCHHHHHHHHHHCCCCEEEEEccCccchhhHHHHHHHHHcCCC
Confidence 478888776556555544443211 1 22222 3344444577899998764 23345566667778999
Q ss_pred EEEEccccChhHHHHHHHHHHHHHhcCC
Q 008512 134 SVFAEEEVEYHLRQMMAIVDETLAKVSL 161 (563)
Q Consensus 134 ~V~~~~~~~~~~~~~d~~v~~~l~~~~i 161 (563)
.|++-.-...+.+.+.+++ |.+.|+
T Consensus 88 ~vv~GdI~~~~~r~~~e~v---c~~lGl 112 (218)
T PF01902_consen 88 AVVFGDIDSEYQRNWVERV---CERLGL 112 (218)
T ss_dssp EEE--TTS-HHHHHHHHHH---HHHCT-
T ss_pred EEEECcCCcHHHHHHHHHH---HHHcCC
Confidence 9988877777777765555 444443
No 262
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=45.43 E-value=26 Score=33.94 Aligned_cols=45 Identities=24% Similarity=0.327 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEcChHHHHHHHHHHhCccEEEEcc
Q 008512 95 IFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEE 139 (563)
Q Consensus 95 ~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~a~~V~~~~ 139 (563)
..+..+|-+.|++.|....|+.|.+...+..+++.++++.++.|.
T Consensus 79 ~~ga~elv~~lk~~G~~v~iiSgg~~~lv~~ia~~lg~d~~~an~ 123 (212)
T COG0560 79 TPGAEELVAALKAAGAKVVIISGGFTFLVEPIAERLGIDYVVANE 123 (212)
T ss_pred CccHHHHHHHHHHCCCEEEEEcCChHHHHHHHHHHhCCchheeeE
Confidence 344888999999999999999999999999999999999766654
No 263
>cd01714 ETF_beta The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=43.45 E-value=93 Score=29.77 Aligned_cols=60 Identities=13% Similarity=0.037 Sum_probs=45.0
Q ss_pred HHHHhhCCC-EEEEEcCCCCCCCCCCCcCCCHHHHHHHHHHHHHHhCCCcEEEEEech----hHHHHHHHHhc
Q 008512 447 IYDIADGGN-RVWAITLLGFGRSEKPNIVYTELMWSELLRDFTVEVVGEPVHLIGNSI----GGMFLSTNLTR 514 (563)
Q Consensus 447 ~~~l~~~g~-~Vi~~D~~G~G~S~~~~~~~~~~~~~~~l~~~l~~l~~~~i~lvGhS~----Gg~ia~~~a~~ 514 (563)
.+.+...|. +|+..|.++.. .++.+.+++.+.+++++.+ ..++|+|+|. |..++..+|.+
T Consensus 69 ~~~l~~~G~d~V~~~~~~~~~-------~~~~e~~a~al~~~i~~~~-p~lVL~~~t~~~~~grdlaprlAar 133 (202)
T cd01714 69 LREALAMGADRAILVSDRAFA-------GADTLATAKALAAAIKKIG-VDLILTGKQSIDGDTGQVGPLLAEL 133 (202)
T ss_pred HHHHHHcCCCEEEEEeccccc-------CCChHHHHHHHHHHHHHhC-CCEEEEcCCcccCCcCcHHHHHHHH
Confidence 344445565 68887766443 4677888999999888776 6799999998 88888888775
No 264
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=42.67 E-value=82 Score=29.52 Aligned_cols=33 Identities=18% Similarity=0.275 Sum_probs=25.4
Q ss_pred eEEEECC---CCCChHHHHHHHHHHhhCCCEEEEEc
Q 008512 429 AILLVHG---FGAFLEHYRDNIYDIADGGNRVWAIT 461 (563)
Q Consensus 429 ~vlllHG---~~~~~~~~~~~~~~l~~~g~~Vi~~D 461 (563)
.||++|. ...+.+....+++.|.++||+++.++
T Consensus 153 ~Iil~Hd~~~~~~t~~~l~~~i~~l~~~Gy~~vtl~ 188 (191)
T TIGR02764 153 DIILLHASDSAKQTVKALPTIIKKLKEKGYEFVTIS 188 (191)
T ss_pred CEEEEeCCCCcHhHHHHHHHHHHHHHHCCCEEEEHH
Confidence 5999993 23345667788999999999998864
No 265
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=41.63 E-value=1.1e+02 Score=25.31 Aligned_cols=66 Identities=17% Similarity=0.186 Sum_probs=43.5
Q ss_pred HHHHHHHHHhcCCcEEEE---EcChHHH--HHHHHHHhCccEEEEccccChhHHHHHHHHHHHHHhcCCCCCCceeeee
Q 008512 98 LEDLRKSLKEQGSDLMIR---FGRVENV--IRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDGKPKICLW 171 (563)
Q Consensus 98 L~~L~~~L~~~g~~L~v~---~g~~~~~--l~~l~~~~~a~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~~~~~~ 171 (563)
...+++.+++.|..+.+. .|..... |+..+++ ++.|++--++-.....+ .+++.+++.++ ++....
T Consensus 12 ~~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i~~--aD~VIv~t~~vsH~~~~--~vk~~akk~~i----p~~~~~ 82 (97)
T PF10087_consen 12 ERRYKRILEKYGGKLIHHGRDGGDEKKASRLPSKIKK--ADLVIVFTDYVSHNAMW--KVKKAAKKYGI----PIIYSR 82 (97)
T ss_pred HHHHHHHHHHcCCEEEEEecCCCCccchhHHHHhcCC--CCEEEEEeCCcChHHHH--HHHHHHHHcCC----cEEEEC
Confidence 567788889999999998 3333333 6666654 77777777766555543 56677777664 555554
No 266
>KOG1283 consensus Serine carboxypeptidases [Posttranslational modification, protein turnover, chaperones]
Probab=41.25 E-value=92 Score=32.10 Aligned_cols=88 Identities=13% Similarity=0.024 Sum_probs=57.9
Q ss_pred CCeEEEECCCCCChH----HHHHHHHH---Hhh------CCCEEEEEcCC-CCCCCCC--CC-cCCCHHHHHHHHHHHHH
Q 008512 427 GPAILLVHGFGAFLE----HYRDNIYD---IAD------GGNRVWAITLL-GFGRSEK--PN-IVYTELMWSELLRDFTV 489 (563)
Q Consensus 427 ~~~vlllHG~~~~~~----~~~~~~~~---l~~------~g~~Vi~~D~~-G~G~S~~--~~-~~~~~~~~~~~l~~~l~ 489 (563)
.|..+.+.|.++.+. .|..+-+. +.. +...++-+|-| |.|.|-- .. ...+..+.+.|+.++++
T Consensus 31 ~pl~lwlqGgpGaSstG~GNFeE~GPl~~~~~~r~~TWlk~adllfvDnPVGaGfSyVdg~~~Y~~~~~qia~Dl~~llk 110 (414)
T KOG1283|consen 31 RPLALWLQGGPGASSTGFGNFEELGPLDLDGSPRDWTWLKDADLLFVDNPVGAGFSYVDGSSAYTTNNKQIALDLVELLK 110 (414)
T ss_pred CCeeEEecCCCCCCCcCccchhhcCCcccCCCcCCchhhhhccEEEecCCCcCceeeecCcccccccHHHHHHHHHHHHH
Confidence 677899999876443 23322111 111 12467777755 8888833 22 34467888899988887
Q ss_pred Hh-------CCCcEEEEEechhHHHHHHHHhc
Q 008512 490 EV-------VGEPVHLIGNSIGGMFLSTNLTR 514 (563)
Q Consensus 490 ~l-------~~~~i~lvGhS~Gg~ia~~~a~~ 514 (563)
.+ ...|++|+--|+||-++...+..
T Consensus 111 ~f~~~h~e~~t~P~~If~ESYGGKma~k~al~ 142 (414)
T KOG1283|consen 111 GFFTNHPEFKTVPLYIFCESYGGKMAAKFALE 142 (414)
T ss_pred HHHhcCccccccceEEEEhhcccchhhhhhhh
Confidence 65 23789999999999999887653
No 267
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]
Probab=41.14 E-value=1.8e+02 Score=25.16 Aligned_cols=47 Identities=19% Similarity=0.136 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHhcCCc---EEEEEcCh-HHHHHHHHHHhCccEEEEccc
Q 008512 94 VIFALEDLRKSLKEQGSD---LMIRFGRV-ENVIRELVEEVKATSVFAEEE 140 (563)
Q Consensus 94 l~~sL~~L~~~L~~~g~~---L~v~~g~~-~~~l~~l~~~~~a~~V~~~~~ 140 (563)
..+.+.++++.+++.|+. ..+..|++ .+.+...+.+.+++.|+.-..
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~a~~~~adliV~G~~ 122 (154)
T COG0589 72 AEELLAEAKALAEAAGVPVVETEVVEGSPSAEEILELAEEEDADLIVVGSR 122 (154)
T ss_pred HHHHHHHHHHHHHHcCCCeeEEEEecCCCcHHHHHHHHHHhCCCEEEECCC
Confidence 356777888888888865 56778999 699999999999998887664
No 268
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=40.55 E-value=35 Score=32.48 Aligned_cols=42 Identities=17% Similarity=0.429 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhcCCcEEEEEcChHHHHHHHHHHhCccE--EEEc
Q 008512 97 ALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATS--VFAE 138 (563)
Q Consensus 97 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~a~~--V~~~ 138 (563)
++.+|-..|+++|..++++.|-....+.-++.++++.. +|.|
T Consensus 92 Gi~eLv~~L~~~~~~v~liSGGF~~~i~~Va~~Lgi~~~n~yAN 135 (227)
T KOG1615|consen 92 GIRELVSRLHARGTQVYLISGGFRQLIEPVAEQLGIPKSNIYAN 135 (227)
T ss_pred CHHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHhCCcHhhhhhh
Confidence 57778888888888888888888887777888877764 5544
No 269
>KOG1551 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.46 E-value=29 Score=34.58 Aligned_cols=88 Identities=13% Similarity=0.018 Sum_probs=51.0
Q ss_pred CCeEEEECCCCCChHHHH-HHHHHHhhCCCEEEEEcCCCCCCCCCCCcCC-CHHHH-------HHHHHHHHH------Hh
Q 008512 427 GPAILLVHGFGAFLEHYR-DNIYDIADGGNRVWAITLLGFGRSEKPNIVY-TELMW-------SELLRDFTV------EV 491 (563)
Q Consensus 427 ~~~vlllHG~~~~~~~~~-~~~~~l~~~g~~Vi~~D~~G~G~S~~~~~~~-~~~~~-------~~~l~~~l~------~l 491 (563)
++.-|.+-|-+++...=. -+.+.+..++...+++.-|-+|....+.... .++.. .+.|.++.. ..
T Consensus 113 ~~KOG~~a~tgdh~y~rr~~L~~p~~k~~i~tmvle~pfYgqr~p~~q~~~~Le~vtDlf~mG~A~I~E~~~lf~Ws~~~ 192 (371)
T KOG1551|consen 113 ADLCLSWALTGDHVYTRRLVLSKPINKREIATMVLEKPFYGQRVPEEQIIHMLEYVTDLFKMGRATIQEFVKLFTWSSAD 192 (371)
T ss_pred CCeeEEEeecCCceeEeeeeecCchhhhcchheeeecccccccCCHHHHHHHHHHHHHHHHhhHHHHHHHHHhccccccc
Confidence 444455544444432211 3456667778888889989888765432111 11111 111222222 23
Q ss_pred CCCcEEEEEechhHHHHHHHHhc
Q 008512 492 VGEPVHLIGNSIGGMFLSTNLTR 514 (563)
Q Consensus 492 ~~~~i~lvGhS~Gg~ia~~~a~~ 514 (563)
+.++..|+|-||||.+|......
T Consensus 193 g~g~~~~~g~Smgg~~a~~vgS~ 215 (371)
T KOG1551|consen 193 GLGNLNLVGRSMGGDIANQVGSL 215 (371)
T ss_pred CcccceeeeeecccHHHHhhccc
Confidence 45899999999999999887664
No 270
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=39.94 E-value=31 Score=31.54 Aligned_cols=43 Identities=28% Similarity=0.370 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhcCCcEEEEEcChHHHHHHHHHHhCccEEEEc
Q 008512 96 FALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAE 138 (563)
Q Consensus 96 ~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~a~~V~~~ 138 (563)
.++.++-+.|++.|.++.|..+.....+..+++.+++..++.+
T Consensus 76 ~g~~~~l~~l~~~g~~~~ivS~~~~~~i~~~~~~~g~~~~~~~ 118 (177)
T TIGR01488 76 PGARELISWLKERGIDTVIVSGGFDFFVEPVAEKLGIDDVFAN 118 (177)
T ss_pred cCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCchheee
Confidence 4566666677777888888877777777777777777655543
No 271
>KOG4388 consensus Hormone-sensitive lipase HSL [Lipid transport and metabolism]
Probab=39.43 E-value=39 Score=37.38 Aligned_cols=83 Identities=17% Similarity=0.012 Sum_probs=45.0
Q ss_pred eEEEECCCCC---ChHHHHHHHHH-HhhCCCEEEEEcCCCCCCCCCCCcCCCHHHHHHHHHHHH---HHhC--CCcEEEE
Q 008512 429 AILLVHGFGA---FLEHYRDNIYD-IADGGNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFT---VEVV--GEPVHLI 499 (563)
Q Consensus 429 ~vlllHG~~~---~~~~~~~~~~~-l~~~g~~Vi~~D~~G~G~S~~~~~~~~~~~~~~~l~~~l---~~l~--~~~i~lv 499 (563)
.|+-+||.|- ++..-...++. -...|..|+.+|+.-.-+. +....+++..-.---+| .-++ .++|+++
T Consensus 398 li~HcHGGGfVAqsSkSHE~YLr~Wa~aL~cPiiSVdYSLAPEa---PFPRaleEv~fAYcW~inn~allG~TgEriv~a 474 (880)
T KOG4388|consen 398 LIVHCHGGGFVAQSSKSHEPYLRSWAQALGCPIISVDYSLAPEA---PFPRALEEVFFAYCWAINNCALLGSTGERIVLA 474 (880)
T ss_pred EEEEecCCceeeeccccccHHHHHHHHHhCCCeEEeeeccCCCC---CCCcHHHHHHHHHHHHhcCHHHhCcccceEEEe
Confidence 5888898763 22221222222 2234789999998533221 12223333222111222 2333 3899999
Q ss_pred EechhHHHHHHHHhc
Q 008512 500 GNSIGGMFLSTNLTR 514 (563)
Q Consensus 500 GhS~Gg~ia~~~a~~ 514 (563)
|-|.||.+.+..+.+
T Consensus 475 GDSAGgNL~~~VaLr 489 (880)
T KOG4388|consen 475 GDSAGGNLCFTVALR 489 (880)
T ss_pred ccCCCcceeehhHHH
Confidence 999999988766543
No 272
>PRK12467 peptide synthase; Provisional
Probab=39.21 E-value=1.4e+02 Score=41.97 Aligned_cols=85 Identities=15% Similarity=0.050 Sum_probs=59.7
Q ss_pred CCeEEEECCCCCChHHHHHHHHHHhhCCCEEEEEcCCCCCCCCCCCcCCCHHHHHHHHHHHHHHh-CCCcEEEEEechhH
Q 008512 427 GPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFTVEV-VGEPVHLIGNSIGG 505 (563)
Q Consensus 427 ~~~vlllHG~~~~~~~~~~~~~~l~~~g~~Vi~~D~~G~G~S~~~~~~~~~~~~~~~l~~~l~~l-~~~~i~lvGhS~Gg 505 (563)
-+.+++.|...++...|..+...+.. +..|+.+..++.-.. .....+++.++..-.+.+... ...+..+.|+|+||
T Consensus 3692 ~~~l~~~h~~~r~~~~~~~l~~~l~~-~~~~~~l~~~~~~~d--~~~~~~~~~~~~~y~~~~~~~~~~~p~~l~g~s~g~ 3768 (3956)
T PRK12467 3692 FPALFCRHEGLGTVFDYEPLAVILEG-DRHVLGLTCRHLLDD--GWQDTSLQAMAVQYADYILWQQAKGPYGLLGWSLGG 3768 (3956)
T ss_pred ccceeeechhhcchhhhHHHHHHhCC-CCcEEEEeccccccc--cCCccchHHHHHHHHHHHHHhccCCCeeeeeeecch
Confidence 34699999999988888787777765 578888877655321 112345555555555555444 34789999999999
Q ss_pred HHHHHHHhc
Q 008512 506 MFLSTNLTR 514 (563)
Q Consensus 506 ~ia~~~a~~ 514 (563)
.++..++..
T Consensus 3769 ~~a~~~~~~ 3777 (3956)
T PRK12467 3769 TLARLVAEL 3777 (3956)
T ss_pred HHHHHHHHH
Confidence 999887653
No 273
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=39.00 E-value=48 Score=30.92 Aligned_cols=44 Identities=23% Similarity=0.304 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEcChHHHHHHHHHHhCccEEEEc
Q 008512 95 IFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAE 138 (563)
Q Consensus 95 ~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~a~~V~~~ 138 (563)
+.++.++-+.|++.|+++.|..+.....+..+++.+++..++.+
T Consensus 82 ~~g~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~ 125 (201)
T TIGR01491 82 RDYAEELVRWLKEKGLKTAIVSGGIMCLAKKVAEKLNPDYVYSN 125 (201)
T ss_pred CccHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhCCCeEEEE
Confidence 34556666777777888888877777777777777777665543
No 274
>PF07519 Tannase: Tannase and feruloyl esterase; InterPro: IPR011118 This family includes fungal tannase [] and feruloyl esterase [, ]. It also includes several bacterial homologues of unknown function.
Probab=38.72 E-value=2.9e+02 Score=30.23 Aligned_cols=82 Identities=12% Similarity=-0.017 Sum_probs=52.2
Q ss_pred HHHHhhCCCEEEEEcCCCCCCCCC---CCcCCC-----------HHHHHHHHHHHHHHh-C--CCcEEEEEechhHHHHH
Q 008512 447 IYDIADGGNRVWAITLLGFGRSEK---PNIVYT-----------ELMWSELLRDFTVEV-V--GEPVHLIGNSIGGMFLS 509 (563)
Q Consensus 447 ~~~l~~~g~~Vi~~D~~G~G~S~~---~~~~~~-----------~~~~~~~l~~~l~~l-~--~~~i~lvGhS~Gg~ia~ 509 (563)
...+. .||.+++-|- ||..+.. .....+ +.+.+..-+++++.+ + ...-+..|.|.||.-++
T Consensus 53 ~~~~~-~G~A~~~TD~-Gh~~~~~~~~~~~~~n~~~~~dfa~ra~h~~~~~aK~l~~~~Yg~~p~~sY~~GcS~GGRqgl 130 (474)
T PF07519_consen 53 ATALA-RGYATASTDS-GHQGSAGSDDASFGNNPEALLDFAYRALHETTVVAKALIEAFYGKAPKYSYFSGCSTGGRQGL 130 (474)
T ss_pred chhhh-cCeEEEEecC-CCCCCcccccccccCCHHHHHHHHhhHHHHHHHHHHHHHHHHhCCCCCceEEEEeCCCcchHH
Confidence 33444 4999999986 7765533 111122 223333344455443 2 35688899999999999
Q ss_pred HHHhc-cCcccEEEEEcCcCCh
Q 008512 510 TNLTR-GKLYAFLLSVNYLLSR 530 (563)
Q Consensus 510 ~~a~~-~~~~~~v~~~~~~~~~ 530 (563)
..|++ |+....|+...+....
T Consensus 131 ~~AQryP~dfDGIlAgaPA~~~ 152 (474)
T PF07519_consen 131 MAAQRYPEDFDGILAGAPAINW 152 (474)
T ss_pred HHHHhChhhcCeEEeCCchHHH
Confidence 99999 8877777776665543
No 275
>PRK10490 sensor protein KdpD; Provisional
Probab=38.27 E-value=2e+02 Score=34.34 Aligned_cols=69 Identities=14% Similarity=0.161 Sum_probs=48.6
Q ss_pred CCeEEEEEECCcccccCCHhHHHHHHHHHHHHHHHHHhcCCcEEEEEc-ChHHHHHHHHHHhCccEEEEccccCh
Q 008512 70 QAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKEQGSDLMIRFG-RVENVIRELVEEVKATSVFAEEEVEY 143 (563)
Q Consensus 70 ~~vl~vfi~dp~~~~~~~~~r~~Fl~~sL~~L~~~L~~~g~~L~v~~g-~~~~~l~~l~~~~~a~~V~~~~~~~~ 143 (563)
.++++||+-.+..-. .......-+.+.++ |. +++|...+++.| ++.+.|.+++++.+++.|+.-+.-..
T Consensus 279 a~~~~l~V~~~~~~~-~~~~~~~~l~~~~~-lA---~~lGa~~~~~~~~dva~~i~~~A~~~~vt~IViG~s~~~ 348 (895)
T PRK10490 279 SVWHAVYVETPRLHR-LPEKKRRAILSALR-LA---QELGAETATLSDPAEEKAVLRYAREHNLGKIIIGRRASR 348 (895)
T ss_pred CCEEEEEEecCCcCc-CCHHHHHHHHHHHH-HH---HHcCCEEEEEeCCCHHHHHHHHHHHhCCCEEEECCCCCC
Confidence 589999998764321 22333333444442 43 456999888776 78899999999999999999887654
No 276
>COG3933 Transcriptional antiterminator [Transcription]
Probab=38.13 E-value=2.8e+02 Score=29.94 Aligned_cols=76 Identities=13% Similarity=0.118 Sum_probs=57.8
Q ss_pred CeEEEECCCCCChHHHHHHHHHHhhCCCEEEEEcCCCCCCCCCCCcCCCHHHHHHHHHHHHHHhCCCcEEEEEechhHHH
Q 008512 428 PAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFTVEVVGEPVHLIGNSIGGMF 507 (563)
Q Consensus 428 ~~vlllHG~~~~~~~~~~~~~~l~~~g~~Vi~~D~~G~G~S~~~~~~~~~~~~~~~l~~~l~~l~~~~i~lvGhS~Gg~i 507 (563)
..||+-||.+..+. ...++..|... --+.++|+| .+-+..+..+-+.+.+++....+-.++=-.||...
T Consensus 110 ~vIiiAHG~sTASS-maevanrLL~~-~~~~aiDMP---------Ldvsp~~vle~l~e~~k~~~~~~GlllLVDMGSL~ 178 (470)
T COG3933 110 KVIIIAHGYSTASS-MAEVANRLLGE-EIFIAIDMP---------LDVSPSDVLEKLKEYLKERDYRSGLLLLVDMGSLT 178 (470)
T ss_pred eEEEEecCcchHHH-HHHHHHHHhhc-cceeeecCC---------CcCCHHHHHHHHHHHHHhcCccCceEEEEecchHH
Confidence 46999999876544 45778888774 468899998 45678888998999998888777666667999998
Q ss_pred HHHHHhc
Q 008512 508 LSTNLTR 514 (563)
Q Consensus 508 a~~~a~~ 514 (563)
...-...
T Consensus 179 ~f~~~i~ 185 (470)
T COG3933 179 SFGSIIS 185 (470)
T ss_pred HHHHHHH
Confidence 8665443
No 277
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=37.36 E-value=1.3e+02 Score=34.60 Aligned_cols=60 Identities=17% Similarity=0.081 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHhcCCcEEEEEcChHHHHHHHHHHhCccEEEEccccChhHHHHHHHHHHHHHhcC
Q 008512 96 FALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVS 160 (563)
Q Consensus 96 ~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~a~~V~~~~~~~~~~~~~d~~v~~~l~~~~ 160 (563)
+...+.-++|++.|++.+++.||.......++++.|++.|+.+- .|+.+. ++.+.+++.|
T Consensus 444 ~~a~e~I~~Lr~~GI~vvMiTGDn~~TA~aIA~elGI~~v~A~~--~PedK~---~iV~~lQ~~G 503 (673)
T PRK14010 444 DGLVERFRELREMGIETVMCTGDNELTAATIAKEAGVDRFVAEC--KPEDKI---NVIREEQAKG 503 (673)
T ss_pred HHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCceEEcCC--CHHHHH---HHHHHHHhCC
Confidence 55666667778899999999999999999999999999887654 455554 3445566554
No 278
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=36.94 E-value=68 Score=29.58 Aligned_cols=41 Identities=24% Similarity=0.447 Sum_probs=36.1
Q ss_pred HHHHHHHhcCCcEEEEEcChHHHHHHHHHHhCccE--EEEccc
Q 008512 100 DLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATS--VFAEEE 140 (563)
Q Consensus 100 ~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~a~~--V~~~~~ 140 (563)
++-+.|++.|.+++|+.|.+...+..+++.+++.. |++++.
T Consensus 96 e~i~~~~~~~~~v~IvS~~~~~~i~~~~~~~~i~~~~v~~~~~ 138 (192)
T PF12710_consen 96 ELIRELKDNGIKVVIVSGSPDEIIEPIAERLGIDDDNVIGNEL 138 (192)
T ss_dssp HHHHHHHHTTSEEEEEEEEEHHHHHHHHHHTTSSEGGEEEEEE
T ss_pred HHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCceEEEEEee
Confidence 66677888899999999999999999999999987 777776
No 279
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=36.47 E-value=2.1e+02 Score=27.69 Aligned_cols=92 Identities=11% Similarity=0.008 Sum_probs=48.1
Q ss_pred HHHHHHHhC-CCeEEEEEECCcccccCCHhHHHHHHHHHHHHHHHHHhcCCcEEEEEcC-----hHHHHHHHHHH---hC
Q 008512 61 LGLVAASKY-QAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKEQGSDLMIRFGR-----VENVIRELVEE---VK 131 (563)
Q Consensus 61 ~aL~~A~~~-~~vl~vfi~dp~~~~~~~~~r~~Fl~~sL~~L~~~L~~~g~~L~v~~g~-----~~~~l~~l~~~---~~ 131 (563)
-+|+.|.+. ..+++++.+.+....... |-...+..+++..+.+|+++.+..-+ ..+.+...+++ .+
T Consensus 12 ~al~~a~~~G~~v~~l~~~~~~~~~~~~-----~~~~~~~~~~~~A~~lgip~~~i~~~~~~~~~~~~l~~~l~~~~~~g 86 (218)
T TIGR03679 12 YALYKALEEGHEVRCLITVVPENEESYM-----FHTPNIELTRLQAEALGIPLVKIETSGEKEKEVEDLKGALKELKREG 86 (218)
T ss_pred HHHHHHHHcCCEEEEEEEeccCCCCccc-----cCCCCHHHHHHHHHHhCCCEEEEECCCCChHHHHHHHHHHHHHHHcC
Confidence 355666665 356556555543211100 00124556666677889999887633 22223322222 28
Q ss_pred ccEEEEccccChhHHHHHHHHHHHHHhcC
Q 008512 132 ATSVFAEEEVEYHLRQMMAIVDETLAKVS 160 (563)
Q Consensus 132 a~~V~~~~~~~~~~~~~d~~v~~~l~~~~ 160 (563)
++.|++-.-...+.+.+.+ +.+.+.|
T Consensus 87 ~~~vv~G~i~sd~~~~~~e---~v~~~~g 112 (218)
T TIGR03679 87 VEGIVTGAIASRYQKSRIE---RICEELG 112 (218)
T ss_pred CCEEEECCcccHhHHHHHH---HHHHhCC
Confidence 8888876666655555544 4444444
No 280
>KOG2872 consensus Uroporphyrinogen decarboxylase [Coenzyme transport and metabolism]
Probab=36.29 E-value=1e+02 Score=31.21 Aligned_cols=69 Identities=16% Similarity=0.231 Sum_probs=46.6
Q ss_pred CCeEEEECCCCCChHHHHHHHHHHhhCCCEEEEEcCCCC--------CCC-------CCCCcCCCHHHHHHHHHHHHHHh
Q 008512 427 GPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGF--------GRS-------EKPNIVYTELMWSELLRDFTVEV 491 (563)
Q Consensus 427 ~~~vlllHG~~~~~~~~~~~~~~l~~~g~~Vi~~D~~G~--------G~S-------~~~~~~~~~~~~~~~l~~~l~~l 491 (563)
-|.|+|.-|.++ .++.|+..||+|+..|+--- |.. +.....-+.+.+.+.+.+.++..
T Consensus 252 vPmi~fakG~g~-------~Le~l~~tG~DVvgLDWTvdp~ear~~~g~~VtlQGNlDP~~ly~s~e~it~~v~~mv~~f 324 (359)
T KOG2872|consen 252 VPMILFAKGSGG-------ALEELAQTGYDVVGLDWTVDPAEARRRVGNRVTLQGNLDPGVLYGSKEEITQLVKQMVKDF 324 (359)
T ss_pred CceEEEEcCcch-------HHHHHHhcCCcEEeecccccHHHHHHhhCCceEEecCCChHHhcCCHHHHHHHHHHHHHHh
Confidence 477888888654 46778888999999998421 211 11112236788888899999999
Q ss_pred CCCcEEE-EEec
Q 008512 492 VGEPVHL-IGNS 502 (563)
Q Consensus 492 ~~~~i~l-vGhS 502 (563)
+..+.++ +||-
T Consensus 325 G~~ryI~NLGHG 336 (359)
T KOG2872|consen 325 GKSRYIANLGHG 336 (359)
T ss_pred CccceEEecCCC
Confidence 8766444 6764
No 281
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=35.55 E-value=58 Score=32.95 Aligned_cols=37 Identities=16% Similarity=0.267 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHhcCCcEEEEEcChHHHHHHHHHHhCc
Q 008512 96 FALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKA 132 (563)
Q Consensus 96 ~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~a 132 (563)
.+..+|-+.|+++|+++.|..|.....+..+.++.++
T Consensus 124 pG~~efl~~L~~~GIpv~IvS~G~~~~Ie~vL~~lgl 160 (277)
T TIGR01544 124 DGYENFFDKLQQHSIPVFIFSAGIGNVLEEVLRQAGV 160 (277)
T ss_pred cCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHHcCC
Confidence 3566777777777777777777777777777776555
No 282
>PF03610 EIIA-man: PTS system fructose IIA component; InterPro: IPR004701 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for IIA and IIB components.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane; PDB: 3GDW_B 2JZN_A 1VSQ_A 2JZO_B 1VRC_A 1PDO_A 3GX1_A 3B48_B 3BED_B 3IPR_C ....
Probab=34.58 E-value=2.5e+02 Score=23.94 Aligned_cols=72 Identities=18% Similarity=0.159 Sum_probs=48.7
Q ss_pred eEEEECCCCCChHHHHHHHHHHhhC-CCEEEEEcCCCCCCCCCCCcCCCHHHHHHHHHHHHHHhCC-CcEEEEEechhHH
Q 008512 429 AILLVHGFGAFLEHYRDNIYDIADG-GNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFTVEVVG-EPVHLIGNSIGGM 506 (563)
Q Consensus 429 ~vlllHG~~~~~~~~~~~~~~l~~~-g~~Vi~~D~~G~G~S~~~~~~~~~~~~~~~l~~~l~~l~~-~~i~lvGhS~Gg~ 506 (563)
.||.-|| .-...+...++.+... .-.+.++++. .+.+.+++.+.+.+.++++.. +.+.++- .++|.
T Consensus 2 iii~sHG--~~A~g~~~~~~~i~G~~~~~i~~~~~~---------~~~~~~~~~~~l~~~i~~~~~~~~vlil~-Dl~gg 69 (116)
T PF03610_consen 2 IIIASHG--SLAEGLLESAEMILGEDQDNIEAVDLY---------PDESIEDFEEKLEEAIEELDEGDGVLILT-DLGGG 69 (116)
T ss_dssp EEEEEET--THHHHHHHHHHHHHTSTCSSEEEEEET---------TTSCHHHHHHHHHHHHHHCCTTSEEEEEE-SSTTS
T ss_pred EEEEECc--HHHHHHHHHHHHHcCCCcccEEEEECc---------CCCCHHHHHHHHHHHHHhccCCCcEEEEe-eCCCC
Confidence 4788899 5566667777877765 3477777765 235778889999999988864 4555554 55555
Q ss_pred HHHHHH
Q 008512 507 FLSTNL 512 (563)
Q Consensus 507 ia~~~a 512 (563)
.....+
T Consensus 70 sp~n~a 75 (116)
T PF03610_consen 70 SPFNEA 75 (116)
T ss_dssp HHHHHH
T ss_pred ccchHH
Confidence 444443
No 283
>PRK11175 universal stress protein UspE; Provisional
Probab=34.17 E-value=3.1e+02 Score=27.43 Aligned_cols=42 Identities=24% Similarity=0.253 Sum_probs=31.5
Q ss_pred HHHHHHHHhcCCc---EEEEEcChHHHHHHHHHHhCccEEEEccc
Q 008512 99 EDLRKSLKEQGSD---LMIRFGRVENVIRELVEEVKATSVFAEEE 140 (563)
Q Consensus 99 ~~L~~~L~~~g~~---L~v~~g~~~~~l~~l~~~~~a~~V~~~~~ 140 (563)
..+++-+++.|++ .++..|++.+.+.+.+++.+++.|++-..
T Consensus 226 ~~l~~~~~~~~~~~~~~~v~~G~~~~~I~~~a~~~~~DLIVmG~~ 270 (305)
T PRK11175 226 LAMKALRQKFGIDEEQTHVEEGLPEEVIPDLAEHLDAELVILGTV 270 (305)
T ss_pred HHHHHHHHHhCCChhheeeccCCHHHHHHHHHHHhCCCEEEECCC
Confidence 3444444555654 56778999999999999999999887654
No 284
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=34.14 E-value=1.4e+02 Score=34.34 Aligned_cols=60 Identities=10% Similarity=0.050 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHhcCCcEEEEEcChHHHHHHHHHHhCccEEEEccccChhHHHHHHHHHHHHHhcC
Q 008512 96 FALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVS 160 (563)
Q Consensus 96 ~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~a~~V~~~~~~~~~~~~~d~~v~~~l~~~~ 160 (563)
....+.-++|++.|+..+++.||.......++++.+++.|+.+-. |+.+. ++.+.+++.|
T Consensus 448 ~~~~eai~~Lr~~GI~vvMiTGDn~~TA~aIA~elGId~v~A~~~--PedK~---~iV~~lQ~~G 507 (679)
T PRK01122 448 PGIKERFAELRKMGIKTVMITGDNPLTAAAIAAEAGVDDFLAEAT--PEDKL---ALIRQEQAEG 507 (679)
T ss_pred hhHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCcEEEccCC--HHHHH---HHHHHHHHcC
Confidence 456666677888999999999999999999999999999876543 44444 3445566554
No 285
>KOG2521 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.52 E-value=1.6e+02 Score=30.95 Aligned_cols=86 Identities=15% Similarity=0.050 Sum_probs=59.4
Q ss_pred CCeEEEECCCCCChHHHH-HHHHHHhhCCCEEEEEcCCCCCCCCCC-CcCCCHHHHHHHHHHHHHHhC--CCcEEEEEec
Q 008512 427 GPAILLVHGFGAFLEHYR-DNIYDIADGGNRVWAITLLGFGRSEKP-NIVYTELMWSELLRDFTVEVV--GEPVHLIGNS 502 (563)
Q Consensus 427 ~~~vlllHG~~~~~~~~~-~~~~~l~~~g~~Vi~~D~~G~G~S~~~-~~~~~~~~~~~~l~~~l~~l~--~~~i~lvGhS 502 (563)
..+||++=||.|..+.+. .....+...||.|+.+-.|-+-..... ....+.......+..++.... ..++++--+|
T Consensus 38 ~k~Iv~~~gWag~~~r~l~ky~~~Yq~~g~~~~~~tap~~~~~~~~s~~~~sl~~~~~~l~~L~~~~~~~~~pi~fh~FS 117 (350)
T KOG2521|consen 38 EKPIVVLLGWAGAIDRNLMKYSKIYQDKGYIVVRITAPCPSVFLSASRRILSLSLASTRLSELLSDYNSDPCPIIFHVFS 117 (350)
T ss_pred cccEEEEeeeccccchhHHHHHHHHhcCCceEEEecCcccccccccccccchhhHHHHHHHHHhhhccCCcCceEEEEec
Confidence 436777778888766544 667777788999999888866443322 223455566667777776665 4678888999
Q ss_pred hhHHHHHHHH
Q 008512 503 IGGMFLSTNL 512 (563)
Q Consensus 503 ~Gg~ia~~~a 512 (563)
|||.+.+...
T Consensus 118 ~ng~~~~~si 127 (350)
T KOG2521|consen 118 GNGVRLMYSI 127 (350)
T ss_pred CCceeehHHH
Confidence 9998876543
No 286
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=32.50 E-value=53 Score=31.31 Aligned_cols=42 Identities=24% Similarity=0.355 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHhcCCcEEEEEcChHHHHHHHHHHhCccEEEE
Q 008512 96 FALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFA 137 (563)
Q Consensus 96 ~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~a~~V~~ 137 (563)
.++.++-+.|++.|.++.|..+.....+..+++..++..++.
T Consensus 88 ~g~~~~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~~i~~~~~ 129 (219)
T TIGR00338 88 EGAEELVKTLKEKGYKVAVISGGFDLFAEHVKDKLGLDAAFA 129 (219)
T ss_pred CCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCceEe
Confidence 455566666666677777777666666666666666665554
No 287
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=32.31 E-value=45 Score=38.39 Aligned_cols=58 Identities=16% Similarity=0.120 Sum_probs=43.4
Q ss_pred HHHHHHHHHhcCCcEEEEEcChHHHHHHHHHHhCccEEEEccccChhHHHHHHHHHHHHHhcC
Q 008512 98 LEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVS 160 (563)
Q Consensus 98 L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~a~~V~~~~~~~~~~~~~d~~v~~~l~~~~ 160 (563)
-.+.-+.|+++|+.++++.||......+++++.+|+.|+.+-- |+.+. ++.+.|++.|
T Consensus 542 a~~aI~~L~~~Gi~~~mLTGDn~~~A~~iA~~lGId~v~Aell--PedK~---~~V~~l~~~g 599 (713)
T COG2217 542 AKEAIAALKALGIKVVMLTGDNRRTAEAIAKELGIDEVRAELL--PEDKA---EIVRELQAEG 599 (713)
T ss_pred HHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcChHhheccCC--cHHHH---HHHHHHHhcC
Confidence 4455566788899999999999999999999999999987655 44443 2334455543
No 288
>COG1073 Hydrolases of the alpha/beta superfamily [General function prediction only]
Probab=31.03 E-value=47 Score=32.59 Aligned_cols=88 Identities=26% Similarity=0.259 Sum_probs=49.6
Q ss_pred CCeEEEECCCCCChHHHHHHHHHHhhCCCEEEEEcCCCCCCCCCC----------CcCCCHHHHHHHHHHH------HHH
Q 008512 427 GPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKP----------NIVYTELMWSELLRDF------TVE 490 (563)
Q Consensus 427 ~~~vlllHG~~~~~~~~~~~~~~l~~~g~~Vi~~D~~G~G~S~~~----------~~~~~~~~~~~~l~~~------l~~ 490 (563)
-|.+++.||+++..+........++..++.++..+...+|.+... ...............+ ...
T Consensus 49 ~p~v~~~h~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (299)
T COG1073 49 LPAVVFLHGFGSSKEQSLGYAVLLAEKGYRVLAGDASLFGESGGDPRGLADSEGYAEDFSAAVLLLLSEGVLDKDYRLLG 128 (299)
T ss_pred CceEEeccCccccccCcchHHHHhhhceeEEeeeccccccccccccccccCccccccccchhheeeeccccccHHHHHHh
Confidence 467999999999877755567778777888777765333322211 1111100000000000 011
Q ss_pred hCCCcEEEEEechhHHHHHHHHhc
Q 008512 491 VVGEPVHLIGNSIGGMFLSTNLTR 514 (563)
Q Consensus 491 l~~~~i~lvGhS~Gg~ia~~~a~~ 514 (563)
....+....|.++|+..+..++..
T Consensus 129 ~~~~~~~~~g~~~~~~~~~~~~~~ 152 (299)
T COG1073 129 ASLGPRILAGLSLGGPSAGALLAW 152 (299)
T ss_pred hhcCcceEEEEEeeccchHHHhhc
Confidence 112678888888888888777654
No 289
>PF04084 ORC2: Origin recognition complex subunit 2 ; InterPro: IPR007220 The Origin Recognition Complex (ORC) is a six-subunit ATP-dependent DNA-binding complex encoded in yeast by ORC1-6 []. ORC is a central component for eukaryotic DNA replication, and binds chromatin at replication origins throughout the cell cycle []. ORC directs DNA replication throughout the genome and is required for its initiation [, , ]. ORC bound at replication origins serves as the foundation for assembly of the pre-replicative complex (pre-RC), which includes Cdc6, Tah11 (aka Cdt1), and the Mcm2-7 complex [, , ]. Pre-RC assembly during G1 is required for replication licensing of chromosomes prior to DNA synthesis during S phase [, , ]. Cell cycle-regulated phosphorylation of Orc2, Orc6, Cdc6, and MCM by the cyclin-dependent protein kinase Cdc28 regulates initiation of DNA replication, including blocking reinitiation in G2/M phase [, , , ]. In yeast, ORC also plays a role in the establishment of silencing at the mating-type loci Hidden MAT Left (HML) and Hidden MAT Right (HMR) [, , ]. ORC participates in the assembly of transcriptionally silent chromatin at HML and HMR by recruiting the Sir1 silencing protein to the HML and HMR silencers [, , ]. Both Orc1 and Orc5 bind ATP, though only Orc1 has ATPase activity []. The binding of ATP by Orc1 is required for ORC binding to DNA and is essential for cell viability []. The ATPase activity of Orc1 is involved in formation of the pre-RC [, , ]. ATP binding by Orc5 is crucial for the stability of ORC as a whole. Only the Orc1-5 subunits are required for origin binding; Orc6 is essential for maintenance of pre-RCs once formed []. Interactions within ORC suggest that Orc2-3-6 may form a core complex []. ORC homologues have been found in various eukaryotes, including fission yeast, insects, amphibians, and humans []. This entry represents subunit 2, which binds the origin of replication. It plays a role in chromosome replication and mating type transcriptional silencing.; GO: 0006260 DNA replication, 0000808 origin recognition complex, 0005634 nucleus
Probab=30.92 E-value=2.7e+02 Score=28.90 Aligned_cols=104 Identities=13% Similarity=0.098 Sum_probs=57.4
Q ss_pred EEECCCCCChHHHHHHHHHHhhCC--CEEEEEc--CCCCCCCC------------CCCcCCCHHHHHHHHHHHHHHhC-C
Q 008512 431 LLVHGFGAFLEHYRDNIYDIADGG--NRVWAIT--LLGFGRSE------------KPNIVYTELMWSELLRDFTVEVV-G 493 (563)
Q Consensus 431 lllHG~~~~~~~~~~~~~~l~~~g--~~Vi~~D--~~G~G~S~------------~~~~~~~~~~~~~~l~~~l~~l~-~ 493 (563)
|+++|+|+-......+++.+.... +.|++++ .|+...-+ ......+..+..+.+...+.... .
T Consensus 57 lL~YG~GSKr~lL~~Fa~~~l~~~~~~~~vvvnGy~p~~~~k~il~~I~~~l~~~~~~~~~~~~~~~~~i~~~l~~~~~~ 136 (326)
T PF04084_consen 57 LLFYGYGSKRKLLNDFAEKYLSDWGDGPVVVVNGYFPSLSIKDILNTIEEALLPEPSKKPKSPSEQLDFIISYLESRPSP 136 (326)
T ss_pred EEEEecChHHHHHHHHHHHHhhccCCCcEEEEEccCCCCcHHHHHHHHHHHHhhhcccccCCHHHHHHHHHHHHhccCCC
Confidence 666777776666666666655532 4555554 12211000 00112244555666666666554 5
Q ss_pred CcEEEEEechhHHHHH--------HHHhccCcccEEEEEcCcCChHHHH
Q 008512 494 EPVHLIGNSIGGMFLS--------TNLTRGKLYAFLLSVNYLLSRSIIC 534 (563)
Q Consensus 494 ~~i~lvGhS~Gg~ia~--------~~a~~~~~~~~v~~~~~~~~~~~~~ 534 (563)
.+++|+=|++=|.... ...+.-+.+..|..+..+..+..|.
T Consensus 137 ~~l~lvIHnIDg~~LR~~~~Q~~La~LA~~p~I~lIASiDhinapLLWd 185 (326)
T PF04084_consen 137 PPLYLVIHNIDGPSLRNEKAQSLLAQLASIPNIHLIASIDHINAPLLWD 185 (326)
T ss_pred CceEEEEECCCChhhcChHHHHHHHHHHcCCCeEEEEeccCCCcccccC
Confidence 7899999999877622 2223344566777766666555553
No 290
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=30.10 E-value=3.4e+02 Score=22.89 Aligned_cols=84 Identities=12% Similarity=-0.091 Sum_probs=52.0
Q ss_pred hHHHHHHHHHHhhCCCEEEEEcCCCCCCCCCCCcCCCH-HHHHHHHHHHHHHhCCCcEEEEEechhHHHHHH--HHhc-c
Q 008512 440 LEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNIVYTE-LMWSELLRDFTVEVVGEPVHLIGNSIGGMFLST--NLTR-G 515 (563)
Q Consensus 440 ~~~~~~~~~~l~~~g~~Vi~~D~~G~G~S~~~~~~~~~-~~~~~~l~~~l~~l~~~~i~lvGhS~Gg~ia~~--~a~~-~ 515 (563)
...|..+.+.+...||..=.+.++..|.+......... +-=...+..+++.+...+++++|-|--.=.-.. +|.+ |
T Consensus 10 wnly~~l~~Fl~~~~~P~G~~~Lr~~~~~~~~~~~~~~~~~K~~~i~~i~~~fP~~kfiLIGDsgq~DpeiY~~ia~~~P 89 (100)
T PF09949_consen 10 WNLYPFLRDFLRRNGFPAGPLLLRDYGPSLSGLFKSGAEEHKRDNIERILRDFPERKFILIGDSGQHDPEIYAEIARRFP 89 (100)
T ss_pred HHHHHHHHHHHHhcCCCCCceEcccCCccccccccCCchhHHHHHHHHHHHHCCCCcEEEEeeCCCcCHHHHHHHHHHCC
Confidence 33444555666666788777888887665332211111 122455667888888899999998866543322 2333 7
Q ss_pred CcccEEEE
Q 008512 516 KLYAFLLS 523 (563)
Q Consensus 516 ~~~~~v~~ 523 (563)
+.+.+|.+
T Consensus 90 ~~i~ai~I 97 (100)
T PF09949_consen 90 GRILAIYI 97 (100)
T ss_pred CCEEEEEE
Confidence 77777654
No 291
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=30.10 E-value=88 Score=34.98 Aligned_cols=46 Identities=20% Similarity=0.212 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHhcC-CcEEEEEcChHHHHHHHHHHhCccEEEEcc
Q 008512 94 VIFALEDLRKSLKEQG-SDLMIRFGRVENVIRELVEEVKATSVFAEE 139 (563)
Q Consensus 94 l~~sL~~L~~~L~~~g-~~L~v~~g~~~~~l~~l~~~~~a~~V~~~~ 139 (563)
++.+..++-+.|++.| +++.+..|++......++++.+++.+|.+-
T Consensus 385 ~~~g~~e~l~~L~~~g~i~v~ivTgd~~~~a~~i~~~lgi~~~f~~~ 431 (556)
T TIGR01525 385 LRPEAKEAIAALKRAGGIKLVMLTGDNRSAAEAVAAELGIDEVHAEL 431 (556)
T ss_pred chHhHHHHHHHHHHcCCCeEEEEeCCCHHHHHHHHHHhCCCeeeccC
Confidence 4577888888889999 999999999999999999999999888753
No 292
>smart00827 PKS_AT Acyl transferase domain in polyketide synthase (PKS) enzymes.
Probab=29.60 E-value=57 Score=32.88 Aligned_cols=27 Identities=15% Similarity=0.123 Sum_probs=22.4
Q ss_pred HHHHHhCCCcEEEEEechhHHHHHHHH
Q 008512 486 DFTVEVVGEPVHLIGNSIGGMFLSTNL 512 (563)
Q Consensus 486 ~~l~~l~~~~i~lvGhS~Gg~ia~~~a 512 (563)
+++.+.+..+-.++|||+|-+.|+.++
T Consensus 74 ~~l~~~Gi~p~~~~GhSlGE~aA~~~a 100 (298)
T smart00827 74 RLWRSWGVRPDAVVGHSLGEIAAAYVA 100 (298)
T ss_pred HHHHHcCCcccEEEecCHHHHHHHHHh
Confidence 455677889999999999999987765
No 293
>TIGR01088 aroQ 3-dehydroquinate dehydratase, type II. This model specifies the type II enzyme. The type I enzyme, often found as part of a multifunctional protein, is described by TIGR01093.
Probab=28.60 E-value=4.2e+02 Score=23.93 Aligned_cols=73 Identities=14% Similarity=0.183 Sum_probs=45.5
Q ss_pred HHHHHHHHHH----hcCCcEEEEEcChHHHHHHHHHHh--CccEEEEccc-cChhHHHHHHHHHHHHHhcCCCCCCceee
Q 008512 97 ALEDLRKSLK----EQGSDLMIRFGRVENVIRELVEEV--KATSVFAEEE-VEYHLRQMMAIVDETLAKVSLVDGKPKIC 169 (563)
Q Consensus 97 sL~~L~~~L~----~~g~~L~v~~g~~~~~l~~l~~~~--~a~~V~~~~~-~~~~~~~~d~~v~~~l~~~~i~~~~~~~~ 169 (563)
+|.++.+.|+ ++|+.+.++.-+.+..+.+.+.+. +++.|+.|-. |+.... +++..++..+ ++++.
T Consensus 25 tl~di~~~~~~~a~~~g~~v~~~QSN~EGelId~i~~a~~~~dgiIINpga~THtSi----Al~DAl~~~~----~P~vE 96 (141)
T TIGR01088 25 TLEEIVEIIETFAAQLNVELEFFQSNSEGQLIDKIHEAEGQYDGIIINPGALTHTSV----ALRDALAAVS----LPVVE 96 (141)
T ss_pred CHHHHHHHHHHHHHHcCCEEEEEeeCcHHHHHHHHHhccccCCEEEEcChHHhhhHH----HHHHHHHcCC----CCEEE
Confidence 4555555444 458999999988888887777664 3566776643 333333 4455555444 47888
Q ss_pred eeCccccc
Q 008512 170 LWQTPFYD 177 (563)
Q Consensus 170 ~~~~~L~~ 177 (563)
++-+..+.
T Consensus 97 VHiSNi~a 104 (141)
T TIGR01088 97 VHLSNVHA 104 (141)
T ss_pred EEcCCccc
Confidence 77555553
No 294
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=28.53 E-value=1.8e+02 Score=24.53 Aligned_cols=46 Identities=20% Similarity=0.311 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEcChHHHHHHHHHHhCcc-EEEEccc
Q 008512 95 IFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKAT-SVFAEEE 140 (563)
Q Consensus 95 ~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~a~-~V~~~~~ 140 (563)
+..|+++.+++++.|+.++.+.-++.+.+.++.++++.. .++.+.+
T Consensus 45 l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~ 91 (124)
T PF00578_consen 45 LPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPD 91 (124)
T ss_dssp HHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCSSEEEEETT
T ss_pred hhHHHHHhhhhccceEEeeecccccccchhhhhhhhccccccccCcc
Confidence 355889999999999999999989989999999998866 6666633
No 295
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=28.41 E-value=1.2e+02 Score=25.73 Aligned_cols=41 Identities=22% Similarity=0.353 Sum_probs=30.1
Q ss_pred HHHHHHHHHhcCCcEEEEE-cChHHHHHHHHHHh--CccEEEEccc
Q 008512 98 LEDLRKSLKEQGSDLMIRF-GRVENVIRELVEEV--KATSVFAEEE 140 (563)
Q Consensus 98 L~~L~~~L~~~g~~L~v~~-g~~~~~l~~l~~~~--~a~~V~~~~~ 140 (563)
|.....+|++.|+.|+++- |++.. +.++++.. ... ||+|.+
T Consensus 2 L~~~~~~l~~~gv~lv~I~~g~~~~-~~~f~~~~~~p~~-ly~D~~ 45 (115)
T PF13911_consen 2 LSRRKPELEAAGVKLVVIGCGSPEG-IEKFCELTGFPFP-LYVDPE 45 (115)
T ss_pred hhHhHHHHHHcCCeEEEEEcCCHHH-HHHHHhccCCCCc-EEEeCc
Confidence 5667888899999988875 56645 88888654 444 777775
No 296
>PLN02954 phosphoserine phosphatase
Probab=27.71 E-value=77 Score=30.33 Aligned_cols=44 Identities=20% Similarity=0.391 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEcChHHHHHHHHHHhCcc--EEEE
Q 008512 94 VIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKAT--SVFA 137 (563)
Q Consensus 94 l~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~a~--~V~~ 137 (563)
++.++.++-+.|++.|+++.|..+.....+..+++.+++. .++.
T Consensus 85 l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~~l~~~gi~~~~~~~ 130 (224)
T PLN02954 85 LSPGIPELVKKLRARGTDVYLVSGGFRQMIAPVAAILGIPPENIFA 130 (224)
T ss_pred CCccHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHhCCChhhEEE
Confidence 3456777777888888888888888888888888887775 3543
No 297
>PF10081 Abhydrolase_9: Alpha/beta-hydrolase family; InterPro: IPR012037 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=27.58 E-value=1.6e+02 Score=29.78 Aligned_cols=64 Identities=14% Similarity=-0.101 Sum_probs=41.2
Q ss_pred HHHHHHHHHhCC---CcEEEEEechhHHHHHHHHhc----cCcccEEEEEcCcCChHHHHHHhhhcCCCCC
Q 008512 482 ELLRDFTVEVVG---EPVHLIGNSIGGMFLSTNLTR----GKLYAFLLSVNYLLSRSIICRLFCCHCCLSL 545 (563)
Q Consensus 482 ~~l~~~l~~l~~---~~i~lvGhS~Gg~ia~~~a~~----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 545 (563)
+.+.+-+..+.. .+++|.|.|+|++-+...... ...+...+.+.+......|.++-.+..-.|+
T Consensus 94 ~aV~~~~~~lP~~~RPkL~l~GeSLGa~g~~~af~~~~~~~~~vdGalw~GpP~~s~~w~~~t~~RdpGSp 164 (289)
T PF10081_consen 94 EAVYARWSTLPEDRRPKLYLYGESLGAYGGEAAFDGLDDLRDRVDGALWVGPPFFSPLWRELTDRRDPGSP 164 (289)
T ss_pred HHHHHHHHhCCcccCCeEEEeccCccccchhhhhccHHHhhhhcceEEEeCCCCCChhHHHhccCCCCCCC
Confidence 333333445543 569999999999877665432 3346667777777777777777666655544
No 298
>TIGR03131 malonate_mdcH malonate decarboxylase, epsilon subunit. Members of this protein family are the epsilon subunit of malonate decarboxylase. This subunit has malonyl-CoA/dephospho-CoA acyltransferase activity. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. The epsilon subunit is closely related to the malonyl CoA-acyl carrier protein (ACP) transacylase family described by TIGR00128, but acts on an ACP subunit of malonate decarboxylase that has an unusual coenzyme A derivative as its prothetic group.
Probab=27.49 E-value=66 Score=32.47 Aligned_cols=28 Identities=14% Similarity=0.190 Sum_probs=22.5
Q ss_pred HHHHHHhCCCcEEEEEechhHHHHHHHH
Q 008512 485 RDFTVEVVGEPVHLIGNSIGGMFLSTNL 512 (563)
Q Consensus 485 ~~~l~~l~~~~i~lvGhS~Gg~ia~~~a 512 (563)
.+++.+.+..+..++|||+|-+.|..++
T Consensus 67 ~~~l~~~g~~P~~v~GhS~GE~aAa~~a 94 (295)
T TIGR03131 67 WRALLALLPRPSAVAGYSVGEYAAAVVA 94 (295)
T ss_pred HHHHHhcCCCCcEEeecCHHHHHHHHHh
Confidence 3445667889999999999998887765
No 299
>PRK11175 universal stress protein UspE; Provisional
Probab=27.25 E-value=4.7e+02 Score=26.10 Aligned_cols=87 Identities=13% Similarity=0.019 Sum_probs=50.3
Q ss_pred CCCcCCHHHHHHHhC-----CCeEEEEEECCcccc---cCC-H----hHHHHH---HHHHHHHHHHHHhcCCcEE--EE-
Q 008512 55 LRVDDHLGLVAASKY-----QAVVPLYVFDHRILS---RYS-N----EMLELV---IFALEDLRKSLKEQGSDLM--IR- 115 (563)
Q Consensus 55 LRl~DN~aL~~A~~~-----~~vl~vfi~dp~~~~---~~~-~----~r~~Fl---~~sL~~L~~~L~~~g~~L~--v~- 115 (563)
+=-.+..||.+|... ..+..+++.++.... ... . .+.... .+.|++..+.++..|++.. +.
T Consensus 12 ~s~~~~~al~~a~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~ 91 (305)
T PRK11175 12 PNQDDQPALRRAVYLAQRNGGKITAFLPIYDFSYEMTTLLSPDEREAMRQGVISQRTAWIREQAKPYLDAGIPIEIKVVW 91 (305)
T ss_pred CCccccHHHHHHHHHHHhcCCCEEEEEeccCchhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEEEEec
Confidence 333567788888642 367767666432110 001 1 011111 2234444445555676643 33
Q ss_pred EcChHHHHHHHHHHhCccEEEEcccc
Q 008512 116 FGRVENVIRELVEEVKATSVFAEEEV 141 (563)
Q Consensus 116 ~g~~~~~l~~l~~~~~a~~V~~~~~~ 141 (563)
.|++.+.+.+.+++.+++.|++...-
T Consensus 92 ~g~~~~~i~~~a~~~~~DLiV~G~~~ 117 (305)
T PRK11175 92 HNRPFEAIIQEVIAGGHDLVVKMTHQ 117 (305)
T ss_pred CCCcHHHHHHHHHhcCCCEEEEeCCC
Confidence 58999999999999999999987653
No 300
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=26.99 E-value=1.1e+02 Score=34.10 Aligned_cols=47 Identities=19% Similarity=0.139 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHhcCC-cEEEEEcChHHHHHHHHHHhCccEEEEccc
Q 008512 94 VIFALEDLRKSLKEQGS-DLMIRFGRVENVIRELVEEVKATSVFAEEE 140 (563)
Q Consensus 94 l~~sL~~L~~~L~~~g~-~L~v~~g~~~~~l~~l~~~~~a~~V~~~~~ 140 (563)
+..+..++-+.|++.|+ ++.+..|++......++++.+++.++.+-.
T Consensus 363 l~~~~~e~i~~L~~~Gi~~v~vvTgd~~~~a~~i~~~lgi~~~f~~~~ 410 (536)
T TIGR01512 363 PRPDAAEAIAELKALGIEKVVMLTGDRRAVAERVARELGIDEVHAELL 410 (536)
T ss_pred chHHHHHHHHHHHHcCCCcEEEEcCCCHHHHHHHHHHcCChhhhhccC
Confidence 44778888888899999 999999999999999999999988876443
No 301
>cd00466 DHQase_II Dehydroquinase (DHQase), type II. Dehydroquinase (or 3-dehydroquinate dehydratase) catalyzes the reversible dehydration of 3-dehydroquinate to form 3-dehydroshikimate. This reaction is part of two metabolic pathways: the biosynthetic shikimate pathway and the catabolic quinate pathway. There are two types of DHQases, which are distinct from each other in amino acid sequence and three-dimensional structure. Type I enzymes usually catalyze the biosynthetic reaction using a syn elimination mechanism. In contrast, type II enzymes, found in the quinate pathway of fungi and in the shikimate pathway of many bacteria, are dodecameric enzymes that employ an anti elimination reaction mechanism.
Probab=26.91 E-value=4.7e+02 Score=23.56 Aligned_cols=74 Identities=19% Similarity=0.199 Sum_probs=45.6
Q ss_pred HHHHHHHHHH----HhcCCcEEEEEcChHHHHHHHHHHh--CccEEEEccc-cChhHHHHHHHHHHHHHhcCCCCCCcee
Q 008512 96 FALEDLRKSL----KEQGSDLMIRFGRVENVIRELVEEV--KATSVFAEEE-VEYHLRQMMAIVDETLAKVSLVDGKPKI 168 (563)
Q Consensus 96 ~sL~~L~~~L----~~~g~~L~v~~g~~~~~l~~l~~~~--~a~~V~~~~~-~~~~~~~~d~~v~~~l~~~~i~~~~~~~ 168 (563)
++|.++.+.| +++|+.+.++.-+.+..+.+.+.+. +++.|+.|-. |+... -+++..|+... ++++
T Consensus 24 ~tl~~i~~~l~~~a~~~g~~v~~~QSN~Egelid~I~~a~~~~dgiIINpga~THtS----vAi~DAl~~~~----~P~V 95 (140)
T cd00466 24 TTLADIEALLRELAAELGVEVEFFQSNHEGELIDWIHEARDGADGIIINPGAYTHTS----IALRDALAAVS----IPVI 95 (140)
T ss_pred CCHHHHHHHHHHHHHHcCCEEEEEeeCcHHHHHHHHHHhhccCcEEEEcchHHHHHH----HHHHHHHHcCC----CCEE
Confidence 3444444444 4468999999988888777766653 4667777743 33233 34555565444 4788
Q ss_pred eeeCccccc
Q 008512 169 CLWQTPFYD 177 (563)
Q Consensus 169 ~~~~~~L~~ 177 (563)
.|+-+..+.
T Consensus 96 EVHiSNi~a 104 (140)
T cd00466 96 EVHISNIHA 104 (140)
T ss_pred EEecCCccc
Confidence 877555553
No 302
>PF08218 Citrate_ly_lig: Citrate lyase ligase C-terminal domain; InterPro: IPR013166 [Citrate (pro-3S)-lyase] ligase (6.2.1.22 from EC), also known as citrate lyase ligase, is responsible for acetylation of the prosthetic group (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) of the gamma subunit of citrate lyase. It converts the inactive thiol form of the enzyme to the active form. In Clostridium sphenoides, citrate lyase ligase actively degrades citrate. In Clostridium sporosphaeroides and Lactococcus lactis, however, the enzyme is under stringent regulatory control. The enzyme's activity in anaerobic bacteria is modulated by phosphorylation and dephosphorylation []. The proteins in this entry represent the C-terminal domain of citrate lyase ligase.; GO: 0008771 [citrate (pro-3S)-lyase] ligase activity
Probab=26.80 E-value=2.2e+02 Score=26.77 Aligned_cols=98 Identities=18% Similarity=0.139 Sum_probs=62.0
Q ss_pred HHHHhCCCeEEEEEECCcccccCCHhHHHHHHHHHHHHHHHHHhcCCcEEEEE--------cChH-----------HHHH
Q 008512 64 VAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKEQGSDLMIRF--------GRVE-----------NVIR 124 (563)
Q Consensus 64 ~~A~~~~~vl~vfi~dp~~~~~~~~~r~~Fl~~sL~~L~~~L~~~g~~L~v~~--------g~~~-----------~~l~ 124 (563)
..|++....+-||++..+...-.-.-|...+.+|.++|.+-.--.|++.+|-. .+.. ..+.
T Consensus 20 E~Aa~~~d~l~vFVV~eD~S~Fpf~~R~~LVk~G~~~L~NV~V~~~g~YiIS~aTFPsYFlK~~~~~~~~~~~lD~~iF~ 99 (182)
T PF08218_consen 20 EQAAKECDWLHVFVVSEDRSLFPFADRYELVKEGTADLPNVTVHPGGDYIISSATFPSYFLKDEDDVIKAQAELDATIFK 99 (182)
T ss_pred HHHHHhCCEEEEEEEccccCcCCHHHHHHHHHHHhCcCCCEEEEcCCCeeeecccChhhhccchhHHHHHHHHHHHHHHH
Confidence 45665667888999887653212356888999999998654333355555532 1111 1233
Q ss_pred H-HHHHhCccEEEEccccC-hhHHHHHHHHHHHHHhcCC
Q 008512 125 E-LVEEVKATSVFAEEEVE-YHLRQMMAIVDETLAKVSL 161 (563)
Q Consensus 125 ~-l~~~~~a~~V~~~~~~~-~~~~~~d~~v~~~l~~~~i 161 (563)
+ ++..++|+.=|.-.|+- +--+..-+.+++.|...||
T Consensus 100 ~~IAp~L~It~RfVG~EP~~~vT~~YN~~M~~~Lp~~gi 138 (182)
T PF08218_consen 100 KYIAPALGITKRFVGEEPFSPVTRIYNEAMKEILPPYGI 138 (182)
T ss_pred HHhhHhcCcccceeCCCCCCHHHHHHHHHHHHhccccCC
Confidence 3 66678999777766654 5555666677888887765
No 303
>PF00698 Acyl_transf_1: Acyl transferase domain; InterPro: IPR014043 Enzymes like bacterial malonyl CoA-acly carrier protein transacylase (2.3.1.39 from EC) and eukaryotic fatty acid synthase (2.3.1.85 from EC) that are involved in fatty acid biosynthesis belong to this group. Also included are the polyketide synthases 6-methylsalicylic acid synthase (2.3.1 from EC), a multifunctional enzyme that involved in the biosynthesis of patulin and conidial green pigment synthase (2.3.1 from EC).; PDB: 3HHD_C 2JFD_D 2JFK_A 3G87_A 3IM9_A 2QO3_B 3IM8_A 3EZO_A 2QJ3_A 2QC3_A ....
Probab=25.69 E-value=44 Score=34.30 Aligned_cols=28 Identities=18% Similarity=0.119 Sum_probs=22.7
Q ss_pred HHHHHHhCCCcEEEEEechhHHHHHHHH
Q 008512 485 RDFTVEVVGEPVHLIGNSIGGMFLSTNL 512 (563)
Q Consensus 485 ~~~l~~l~~~~i~lvGhS~Gg~ia~~~a 512 (563)
.+++...+..+-.++|||+|=+.|+.++
T Consensus 75 ~~~l~~~Gi~P~~v~GhSlGE~aA~~aa 102 (318)
T PF00698_consen 75 ARLLRSWGIKPDAVIGHSLGEYAALVAA 102 (318)
T ss_dssp HHHHHHTTHCESEEEESTTHHHHHHHHT
T ss_pred hhhhcccccccceeeccchhhHHHHHHC
Confidence 3456777889999999999999888754
No 304
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=25.69 E-value=1.1e+02 Score=29.27 Aligned_cols=37 Identities=14% Similarity=0.279 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEcChHHHHHHHHHHh
Q 008512 94 VIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEV 130 (563)
Q Consensus 94 l~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~ 130 (563)
+..++.++-+.|++.|+++.|..+.....+..+++.+
T Consensus 71 l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~ 107 (214)
T TIGR03333 71 IREGFREFVAFINEHGIPFYVISGGMDFFVYPLLEGI 107 (214)
T ss_pred ccccHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHhh
Confidence 3355556666666666666666666666555555543
No 305
>PRK13015 3-dehydroquinate dehydratase; Reviewed
Probab=24.89 E-value=5.3e+02 Score=23.43 Aligned_cols=73 Identities=14% Similarity=0.179 Sum_probs=44.6
Q ss_pred HHHHHHHHH----HhcCCcEEEEEcChHHHHHHHHHHh--CccEEEEccc-cChhHHHHHHHHHHHHHhcCCCCCCceee
Q 008512 97 ALEDLRKSL----KEQGSDLMIRFGRVENVIRELVEEV--KATSVFAEEE-VEYHLRQMMAIVDETLAKVSLVDGKPKIC 169 (563)
Q Consensus 97 sL~~L~~~L----~~~g~~L~v~~g~~~~~l~~l~~~~--~a~~V~~~~~-~~~~~~~~d~~v~~~l~~~~i~~~~~~~~ 169 (563)
+|.++.+.| +++|+.+.++.-+.+..+.+.+.+. +++.|+.|-. |+.... +++..++..+ ++++.
T Consensus 27 tl~~i~~~~~~~a~~~g~~~~~~QSN~EGelId~i~~a~~~~dgiIINpga~THtSi----Al~DAl~~~~----~P~VE 98 (146)
T PRK13015 27 TLADVEALCRAAAEALGLEVEFRQSNHEGELIDWIHEARGDVAGIVINPGAYTHTSV----AIRDALAALE----LPVIE 98 (146)
T ss_pred CHHHHHHHHHHHHHHcCCEEEEEeeCcHHHHHHHHHHhhhcCCEEEEcchHHhhhHH----HHHHHHHcCC----CCEEE
Confidence 444444444 4558999999988887777766653 4566777643 333333 4445555444 47888
Q ss_pred eeCccccc
Q 008512 170 LWQTPFYD 177 (563)
Q Consensus 170 ~~~~~L~~ 177 (563)
++-+..+.
T Consensus 99 VHiSNi~a 106 (146)
T PRK13015 99 VHISNVHA 106 (146)
T ss_pred EEcCCccc
Confidence 77555543
No 306
>PRK10279 hypothetical protein; Provisional
Probab=24.87 E-value=86 Score=32.11 Aligned_cols=31 Identities=19% Similarity=0.054 Sum_probs=24.8
Q ss_pred HHHHHHHhCCCcEEEEEechhHHHHHHHHhc
Q 008512 484 LRDFTVEVVGEPVHLIGNSIGGMFLSTNLTR 514 (563)
Q Consensus 484 l~~~l~~l~~~~i~lvGhS~Gg~ia~~~a~~ 514 (563)
+.+.+++.++..-.++|.|+|+.++..+|..
T Consensus 23 VL~aL~E~gi~~d~i~GtS~GAlvga~yA~g 53 (300)
T PRK10279 23 VINALKKVGIEIDIVAGCSIGSLVGAAYACD 53 (300)
T ss_pred HHHHHHHcCCCcCEEEEEcHHHHHHHHHHcC
Confidence 3345566778888999999999999999864
No 307
>COG1073 Hydrolases of the alpha/beta superfamily [General function prediction only]
Probab=24.78 E-value=8 Score=38.20 Aligned_cols=86 Identities=17% Similarity=0.018 Sum_probs=53.4
Q ss_pred CCeEEEECCCCCChHHHHHH-HHHHhhCCCEEEEEcCCCCCCCCCCCcCC----CHHHHHHHHHHHHHHhCCCcEEEEEe
Q 008512 427 GPAILLVHGFGAFLEHYRDN-IYDIADGGNRVWAITLLGFGRSEKPNIVY----TELMWSELLRDFTVEVVGEPVHLIGN 501 (563)
Q Consensus 427 ~~~vlllHG~~~~~~~~~~~-~~~l~~~g~~Vi~~D~~G~G~S~~~~~~~----~~~~~~~~l~~~l~~l~~~~i~lvGh 501 (563)
+..++..||...+......+ ...+...++.++..|+++++.+.+..... +.......+..........++.++|.
T Consensus 88 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 167 (299)
T COG1073 88 GESGGDPRGLADSEGYAEDFSAAVLLLLSEGVLDKDYRLLGASLGPRILAGLSLGGPSAGALLAWGPTRLDASRIVVWGE 167 (299)
T ss_pred cccccccccccCccccccccchhheeeeccccccHHHHHHhhhcCcceEEEEEeeccchHHHhhcchhHHHhhcccceee
Confidence 45678888986554443333 34445557899999999999986543211 12222222222222334578999999
Q ss_pred chhHHHHHHHH
Q 008512 502 SIGGMFLSTNL 512 (563)
Q Consensus 502 S~Gg~ia~~~a 512 (563)
|+||..++...
T Consensus 168 s~g~~~~~~~~ 178 (299)
T COG1073 168 SLGGALALLLL 178 (299)
T ss_pred ccCceeecccc
Confidence 99999987754
No 308
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=24.48 E-value=1.1e+02 Score=27.21 Aligned_cols=30 Identities=17% Similarity=0.256 Sum_probs=22.0
Q ss_pred CCCCeEEEECCCCCChHHHH--HHHHHHhhCC
Q 008512 425 KEGPAILLVHGFGAFLEHYR--DNIYDIADGG 454 (563)
Q Consensus 425 ~~~~~vlllHG~~~~~~~~~--~~~~~l~~~g 454 (563)
+.+|.|+-+||++|+.-.|. -+++.|-..|
T Consensus 50 p~KpLVlSfHG~tGtGKn~v~~liA~~ly~~G 81 (127)
T PF06309_consen 50 PRKPLVLSFHGWTGTGKNFVSRLIAEHLYKSG 81 (127)
T ss_pred CCCCEEEEeecCCCCcHHHHHHHHHHHHHhcc
Confidence 46889999999999987765 3456654444
No 309
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=24.39 E-value=1.2e+02 Score=25.50 Aligned_cols=40 Identities=25% Similarity=0.331 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEcChHHHHHHHHHHhCc
Q 008512 93 LVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKA 132 (563)
Q Consensus 93 Fl~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~a 132 (563)
-+.+++.++-+.|++.|..++++.+.....+..+++..++
T Consensus 24 ~~~~~~~~~l~~l~~~g~~i~ivS~~~~~~~~~~~~~~~~ 63 (139)
T cd01427 24 ELYPGVKEALKELKEKGIKLALATNKSRREVLELLEELGL 63 (139)
T ss_pred CcCcCHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHHcCC
Confidence 3456677777888888999999999998888888888776
No 310
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=24.14 E-value=1.3e+02 Score=34.67 Aligned_cols=50 Identities=12% Similarity=0.102 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHhcCCcEEEEEcChHHHHHHHHHHhCccEEEEccccChhHHH
Q 008512 96 FALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQ 147 (563)
Q Consensus 96 ~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~a~~V~~~~~~~~~~~~ 147 (563)
....+.-++|++.|+...++.||.......++++.+++.++.+- .|..+.
T Consensus 449 p~a~eaI~~l~~~Gi~v~miTGD~~~ta~~iA~~lGI~~v~a~~--~PedK~ 498 (675)
T TIGR01497 449 GGIKERFAQLRKMGIKTIMITGDNRLTAAAIAAEAGVDDFIAEA--TPEDKI 498 (675)
T ss_pred hHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCCEEEcCC--CHHHHH
Confidence 55677777788899999999999999999999999999988643 444443
No 311
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=23.92 E-value=1.5e+02 Score=28.48 Aligned_cols=41 Identities=17% Similarity=0.319 Sum_probs=27.1
Q ss_pred HHHHHHHHhcCCcEEEEEcChHHHHHHHHHHh---CccEEEEcc
Q 008512 99 EDLRKSLKEQGSDLMIRFGRVENVIRELVEEV---KATSVFAEE 139 (563)
Q Consensus 99 ~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~---~a~~V~~~~ 139 (563)
+-|++.|++.|.++.|..+.+...+..+++.. ++.+|++++
T Consensus 101 e~L~~~l~~~G~~v~IvSas~~~~~~~ia~~~~~~~~~~~i~t~ 144 (210)
T TIGR01545 101 ERLRQYLESSDADIWLITGSPQPLVEAVYFDSNFIHRLNLIASQ 144 (210)
T ss_pred HHHHHHHHhCCCEEEEEcCCcHHHHHHHHHhccccccCcEEEEE
Confidence 33444666678888888888887777777763 335555443
No 312
>PF05822 UMPH-1: Pyrimidine 5'-nucleotidase (UMPH-1); InterPro: IPR006434 This family is a small group of metazoan sequences with sequences from Arabidopsis thaliana (Mouse-ear cress) and rice. The sequences represent pyrimidine 5-nucleotidases, apparently in reference to HSPC233, the Homo sapiens (Human) homologue []. The structure of mouse sequence has been reported []. This group of sequences was originally found during searches for members of the haloacid dehalogenase (HAD) superfamily (IPR005834 from INTERPRO). All of the conserved catalytic motifs [] are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches of that subfamily (IA-ID) as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.; GO: 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0005737 cytoplasm; PDB: 2BDU_B 2G07_A 2G06_A 2G0A_A 2Q4T_A 2G09_A 2G08_A 2VKQ_A 2CN1_A 2JGA_A.
Probab=23.84 E-value=79 Score=31.37 Aligned_cols=37 Identities=22% Similarity=0.321 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEcChHHHHHHHHHHh
Q 008512 94 VIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEV 130 (563)
Q Consensus 94 l~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~ 130 (563)
|.++..+|=+.|.+.++|++|+.+--.+++.++.++.
T Consensus 91 LRdg~~~~f~~L~~~~IP~lIFSAGlgdvI~~vL~q~ 127 (246)
T PF05822_consen 91 LRDGVEEFFDKLEEHNIPLLIFSAGLGDVIEEVLRQA 127 (246)
T ss_dssp B-BTHHHHHHHHHCTT--EEEEEEEEHHHHHHHHHHT
T ss_pred hhcCHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHc
Confidence 4467778888888888888888877777777777764
No 313
>TIGR00128 fabD malonyl CoA-acyl carrier protein transacylase. The seed alignment for this family of proteins contains a single member each from a number of bacterial species but also an additional pair of closely related, uncharacterized proteins from B. subtilis, one of which has a long C-terminal extension.
Probab=23.67 E-value=80 Score=31.59 Aligned_cols=27 Identities=19% Similarity=-0.013 Sum_probs=21.3
Q ss_pred HHHHHhC-CCcEEEEEechhHHHHHHHH
Q 008512 486 DFTVEVV-GEPVHLIGNSIGGMFLSTNL 512 (563)
Q Consensus 486 ~~l~~l~-~~~i~lvGhS~Gg~ia~~~a 512 (563)
..+.+.+ ..+-.++|||+|=+.|+.++
T Consensus 74 ~~l~~~g~i~p~~v~GhS~GE~aAa~~a 101 (290)
T TIGR00128 74 LKLKEQGGLKPDFAAGHSLGEYSALVAA 101 (290)
T ss_pred HHHHHcCCCCCCEEeecCHHHHHHHHHh
Confidence 3445566 88999999999999887765
No 314
>COG3673 Uncharacterized conserved protein [Function unknown]
Probab=23.34 E-value=3.7e+02 Score=27.90 Aligned_cols=88 Identities=11% Similarity=-0.055 Sum_probs=51.9
Q ss_pred CCeEEEECCCC----CCh-HHHHHHHHHHhh-CCCEEEEEcCCCCCCCCCCC----------------cCCCHHHHHHHH
Q 008512 427 GPAILLVHGFG----AFL-EHYRDNIYDIAD-GGNRVWAITLLGFGRSEKPN----------------IVYTELMWSELL 484 (563)
Q Consensus 427 ~~~vlllHG~~----~~~-~~~~~~~~~l~~-~g~~Vi~~D~~G~G~S~~~~----------------~~~~~~~~~~~l 484 (563)
+..|+++-|.. ... .....+...|.. .+-+++++=-+|.|.-.-+. ...++...++-.
T Consensus 31 k~lV~CfDGT~nrfg~qp~TNVv~Ly~sl~r~d~~~qv~yYd~GVGt~Gfdavvdvrrrl~~~~~gsmFg~gL~~nI~~A 110 (423)
T COG3673 31 KRLVFCFDGTWNRFGAQPPTNVVLLYASLQRADGVTQVIYYDEGVGTGGFDAVVDVRRRLEKLSGGSMFGQGLVQNIREA 110 (423)
T ss_pred ceEEEEecCchhhcCCCCcchHHHHHHHHhcCCCceEEEEecCCcccccchhhHHHHHhhhhhhhHHHHHHHHHHHHHHH
Confidence 56788888842 222 445566667765 57888888778887542110 011122222222
Q ss_pred HHH-HHHh-CCCcEEEEEechhHHHHHHHHhc
Q 008512 485 RDF-TVEV-VGEPVHLIGNSIGGMFLSTNLTR 514 (563)
Q Consensus 485 ~~~-l~~l-~~~~i~lvGhS~Gg~ia~~~a~~ 514 (563)
..+ +..+ ..++|+++|+|-|+..+-.+|..
T Consensus 111 YrFL~~~yepGD~Iy~FGFSRGAf~aRVlagm 142 (423)
T COG3673 111 YRFLIFNYEPGDEIYAFGFSRGAFSARVLAGM 142 (423)
T ss_pred HHHHHHhcCCCCeEEEeeccchhHHHHHHHHH
Confidence 222 2222 35889999999999999777654
No 315
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=23.22 E-value=3.4e+02 Score=32.41 Aligned_cols=38 Identities=26% Similarity=0.218 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHhcCCcEEEEEcChHHHHHHHHHHhCcc
Q 008512 96 FALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKAT 133 (563)
Q Consensus 96 ~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~a~ 133 (563)
+...+.-+.|++.|+...++.||.......++++.|+.
T Consensus 553 ~~a~~aI~~l~~aGI~v~miTGD~~~tA~~IA~~lGI~ 590 (902)
T PRK10517 553 ETTAPALKALKASGVTVKILTGDSELVAAKVCHEVGLD 590 (902)
T ss_pred hhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCC
Confidence 66777778889999999999999999999999999996
No 316
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=23.21 E-value=2.1e+02 Score=26.61 Aligned_cols=55 Identities=15% Similarity=0.323 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHhcCCcEEEEEcChHHHHHHHHHHhCccEEEEccccChhHHHHHHHHHHHHHhcC
Q 008512 96 FALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVS 160 (563)
Q Consensus 96 ~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~a~~V~~~~~~~~~~~~~d~~v~~~l~~~~ 160 (563)
.++..|+ +.|+++.|..|.+...+..+++++++..++...+. ....+.+.+++.+
T Consensus 55 ~~i~~L~----~~Gi~v~I~T~~~~~~v~~~l~~lgl~~~f~g~~~------k~~~l~~~~~~~g 109 (183)
T PRK09484 55 YGIRCLL----TSGIEVAIITGRKSKLVEDRMTTLGITHLYQGQSN------KLIAFSDLLEKLA 109 (183)
T ss_pred HHHHHHH----HCCCEEEEEeCCCcHHHHHHHHHcCCceeecCCCc------HHHHHHHHHHHhC
Confidence 3555554 57999999999999999999999999877753221 1245556666554
No 317
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=23.06 E-value=80 Score=30.22 Aligned_cols=44 Identities=9% Similarity=0.128 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEcChHHHHHHHHHHhCccEEEEc
Q 008512 94 VIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAE 138 (563)
Q Consensus 94 l~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~a~~V~~~ 138 (563)
+..+..++-+.|++. +++.|..|.....+..++++++++.+++|
T Consensus 69 l~pga~ell~~lk~~-~~~~IVS~~~~~~~~~il~~lgi~~~~an 112 (203)
T TIGR02137 69 PLEGAVEFVDWLRER-FQVVILSDTFYEFSQPLMRQLGFPTLLCH 112 (203)
T ss_pred CCccHHHHHHHHHhC-CeEEEEeCChHHHHHHHHHHcCCchhhce
Confidence 345666777777775 48999999998888889999999877764
No 318
>cd07225 Pat_PNPLA6_PNPLA7 Patatin-like phospholipase domain containing protein 6 and protein 7. Patatin-like phospholipase domain containing protein 6 (PNPLA6) and protein 7 (PNPLA7) are 60% identical to each other. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. PNPLA7 is an insulin-regulated phospholipase that is homologous to Neuropathy Target Esterase (NTE or PNPLA6) and is also known as NTE-related esterase (NRE). Human NRE is predominantly expressed in prostate, white adipose, and pancreatic tissue. NRE
Probab=23.00 E-value=99 Score=31.75 Aligned_cols=31 Identities=16% Similarity=-0.027 Sum_probs=24.8
Q ss_pred HHHHHHHhCCCcEEEEEechhHHHHHHHHhc
Q 008512 484 LRDFTVEVVGEPVHLIGNSIGGMFLSTNLTR 514 (563)
Q Consensus 484 l~~~l~~l~~~~i~lvGhS~Gg~ia~~~a~~ 514 (563)
+.+.+++.++..=.++|.|+|+.++..++..
T Consensus 33 vL~aLee~gi~~d~v~GtSaGAi~ga~ya~g 63 (306)
T cd07225 33 VIKALEEAGIPVDMVGGTSIGAFIGALYAEE 63 (306)
T ss_pred HHHHHHHcCCCCCEEEEECHHHHHHHHHHcC
Confidence 4455566677777889999999999999865
No 319
>cd00006 PTS_IIA_man PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. IIA subunits receive phosphoryl groups from HPr and transfer them to IIB subunits, which in turn phosphorylate the substrate.
Probab=22.98 E-value=4.9e+02 Score=22.34 Aligned_cols=71 Identities=20% Similarity=0.137 Sum_probs=47.6
Q ss_pred eEEEECCCCCChHHHHHHHHHHhhCCCEEEEEcCCCCCCCCCCCcCCCHHHHHHHHHHHHHHhCC-CcEEEEEechhHHH
Q 008512 429 AILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFTVEVVG-EPVHLIGNSIGGMF 507 (563)
Q Consensus 429 ~vlllHG~~~~~~~~~~~~~~l~~~g~~Vi~~D~~G~G~S~~~~~~~~~~~~~~~l~~~l~~l~~-~~i~lvGhS~Gg~i 507 (563)
.||.-|| .-.......++.+....-.+.++++. .+.+.+++.+.+.++++.+.. +.+.++--=+||..
T Consensus 3 ili~sHG--~~A~gi~~~~~~i~G~~~~i~~~~~~---------~~~~~~~~~~~i~~~i~~~~~~~~viil~Dl~GGSp 71 (122)
T cd00006 3 IIIATHG--GFASGLLNSAEMILGEQENVEAIDFP---------PGESPDDLLEKIKAALAELDSGEGVLILTDLFGGSP 71 (122)
T ss_pred EEEEcCH--HHHHHHHHHHHHhcCCCCCeEEEEeC---------CCCCHHHHHHHHHHHHHHhCCCCcEEEEEeCCCCCH
Confidence 4788888 55555666677776544477788775 134677888888899988864 45666554447776
Q ss_pred HHH
Q 008512 508 LST 510 (563)
Q Consensus 508 a~~ 510 (563)
...
T Consensus 72 ~n~ 74 (122)
T cd00006 72 NNA 74 (122)
T ss_pred HHH
Confidence 543
No 320
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=22.68 E-value=4.7e+02 Score=27.98 Aligned_cols=73 Identities=11% Similarity=0.129 Sum_probs=42.9
Q ss_pred CCeEEEECCCCCCh---HHHHHHHHHHhhCCCEEEEEcCCCC---CCCCCCCcCCCHHHHHHHHHHHHHH--hCCCcEEE
Q 008512 427 GPAILLVHGFGAFL---EHYRDNIYDIADGGNRVWAITLLGF---GRSEKPNIVYTELMWSELLRDFTVE--VVGEPVHL 498 (563)
Q Consensus 427 ~~~vlllHG~~~~~---~~~~~~~~~l~~~g~~Vi~~D~~G~---G~S~~~~~~~~~~~~~~~l~~~l~~--l~~~~i~l 498 (563)
+.+||+++-+.... ......+..|.+.|+.|+-++ +|+ |.. +.....+.++....+...+.. +...++.+
T Consensus 116 ~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~~G~~ii~P~-~g~la~~~~-g~gr~~~~~~I~~~~~~~~~~~~l~gk~vlI 193 (399)
T PRK05579 116 TAPVLVAPAMNTQMWENPATQRNLATLRSRGVEIIGPA-SGRLACGDV-GPGRMAEPEEIVAAAERALSPKDLAGKRVLI 193 (399)
T ss_pred CCCEEEEeCCChhHcCCHHHHHHHHHHHHCCCEEECCC-CccccCCCc-CCCCCCCHHHHHHHHHHHhhhcccCCCEEEE
Confidence 34677777654322 224466778888899888654 343 322 222345677777777666633 44566777
Q ss_pred EEe
Q 008512 499 IGN 501 (563)
Q Consensus 499 vGh 501 (563)
.|-
T Consensus 194 TgG 196 (399)
T PRK05579 194 TAG 196 (399)
T ss_pred eCC
Confidence 765
No 321
>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised.
Probab=22.57 E-value=9.7e+02 Score=25.67 Aligned_cols=86 Identities=17% Similarity=0.076 Sum_probs=53.4
Q ss_pred CeEEEECCCCCC-hHHHHHHHHHHhhCCCEEEEEcCCCCCCCCCCC----------cCCC-------------HHHHHHH
Q 008512 428 PAILLVHGFGAF-LEHYRDNIYDIADGGNRVWAITLLGFGRSEKPN----------IVYT-------------ELMWSEL 483 (563)
Q Consensus 428 ~~vlllHG~~~~-~~~~~~~~~~l~~~g~~Vi~~D~~G~G~S~~~~----------~~~~-------------~~~~~~~ 483 (563)
++|+++ |-.++ .+.+..+.+.+.+.|..|+.+|.-=.|...... ...+ ++.+.+-
T Consensus 2 ~tI~ii-gT~DTK~~E~~yl~~~i~~~G~~v~~iDvg~~~~~~~~~di~~~eVa~~~g~~~~~~~~~~dRg~ai~~M~~g 80 (403)
T PF06792_consen 2 KTIAII-GTLDTKGEELLYLRDQIEAQGVEVLLIDVGTLGEPSFPPDISREEVARAAGDSIEAVRSSGDRGEAIEAMARG 80 (403)
T ss_pred CEEEEE-EccCCCHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCcCHHHHHHhcCCChHHhhccCCHHHHHHHHHHH
Confidence 345555 55554 567777888888899999999975555443221 0111 1223333
Q ss_pred HHHHHHHhC----CCcEEEEEechhHHHHHHHHhc
Q 008512 484 LRDFTVEVV----GEPVHLIGNSIGGMFLSTNLTR 514 (563)
Q Consensus 484 l~~~l~~l~----~~~i~lvGhS~Gg~ia~~~a~~ 514 (563)
+..++..+. +.-|+-+|-|.|..++......
T Consensus 81 a~~~v~~l~~~g~i~Gvi~~GGs~GT~lat~aMr~ 115 (403)
T PF06792_consen 81 AARFVSDLYDEGKIDGVIGIGGSGGTALATAAMRA 115 (403)
T ss_pred HHHHHHHHHhcCCccEEEEecCCccHHHHHHHHHh
Confidence 334444432 3557788999999999888765
No 322
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=22.43 E-value=7.3e+02 Score=24.19 Aligned_cols=52 Identities=13% Similarity=0.254 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEEcCh------------------HHHHHHHHHHhCccEEEEccccC
Q 008512 91 LELVIFALEDLRKSLKEQGSDLMIRFGRV------------------ENVIRELVEEVKATSVFAEEEVE 142 (563)
Q Consensus 91 ~~Fl~~sL~~L~~~L~~~g~~L~v~~g~~------------------~~~l~~l~~~~~a~~V~~~~~~~ 142 (563)
..|..+...+..+.|+++|+++++..|.. .+.+..++++++.+-|-.+.|+.
T Consensus 46 ~~~~~~~~~~~i~~l~~kG~KVl~sigg~~~~~~~~~~~~~~~~~~fa~~l~~~v~~yglDGiDiD~E~~ 115 (255)
T cd06542 46 VQFLLTNKETYIRPLQAKGTKVLLSILGNHLGAGFANNLSDAAAKAYAKAIVDTVDKYGLDGVDFDDEYS 115 (255)
T ss_pred hhhhhHHHHHHHHHHhhCCCEEEEEECCCCCCCCccccCCHHHHHHHHHHHHHHHHHhCCCceEEeeeec
Confidence 56888888888899999999987754311 13444555667777776666654
No 323
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=22.02 E-value=2.4e+02 Score=27.75 Aligned_cols=85 Identities=16% Similarity=0.002 Sum_probs=46.0
Q ss_pred CCCeEEEECCCCC--ChHHHH-HHHHHHhhCCCEEEEEcCCCCCC---CCCC----CcCCCHHHHHH-----HHHHHHHH
Q 008512 426 EGPAILLVHGFGA--FLEHYR-DNIYDIADGGNRVWAITLLGFGR---SEKP----NIVYTELMWSE-----LLRDFTVE 490 (563)
Q Consensus 426 ~~~~vlllHG~~~--~~~~~~-~~~~~l~~~g~~Vi~~D~~G~G~---S~~~----~~~~~~~~~~~-----~l~~~l~~ 490 (563)
.++.|+||+-.+. ....|. .+...+.+.|+.|..++...--. ...+ ....++ .+.+ .+.+.+.+
T Consensus 30 ~~~~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~v~~l~~~~d~~~~l~~ad~I~v~GGnt~-~l~~~l~~~gl~~~l~~ 108 (233)
T PRK05282 30 GRRKAVFIPYAGVTQSWDDYTAKVAEALAPLGIEVTGIHRVADPVAAIENAEAIFVGGGNTF-QLLKQLYERGLLAPIRE 108 (233)
T ss_pred CCCeEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEeccchhhHHHHhcCCEEEECCccHH-HHHHHHHHCCcHHHHHH
Confidence 3567999998773 344444 45667788899988887652100 0000 011111 1111 11222322
Q ss_pred hCCCcEEEEEechhHHHHHHH
Q 008512 491 VVGEPVHLIGNSIGGMFLSTN 511 (563)
Q Consensus 491 l~~~~i~lvGhS~Gg~ia~~~ 511 (563)
.-..-..++|.|.|++++...
T Consensus 109 ~~~~G~~~~G~SAGAii~~~~ 129 (233)
T PRK05282 109 AVKNGTPYIGWSAGANVAGPT 129 (233)
T ss_pred HHHCCCEEEEECHHHHhhhcc
Confidence 212347899999999886543
No 324
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=21.98 E-value=5.5e+02 Score=25.66 Aligned_cols=43 Identities=14% Similarity=0.143 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHhcCCcEEEEE-cChHHHHHHHHHHhCccEEEEc
Q 008512 96 FALEDLRKSLKEQGSDLMIRF-GRVENVIRELVEEVKATSVFAE 138 (563)
Q Consensus 96 ~sL~~L~~~L~~~g~~L~v~~-g~~~~~l~~l~~~~~a~~V~~~ 138 (563)
+-|.++.+.+++.|++.++.. ..+...+..|+++.++..|..+
T Consensus 207 ~~l~~l~~~ik~~~v~~if~e~~~~~~~~~~la~~~g~~v~~ld 250 (282)
T cd01017 207 KQLAELVEFVKKSDVKYIFFEENASSKIAETLAKETGAKLLVLN 250 (282)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHcCCcEEEec
Confidence 347888889999999988875 4445677778999999877655
No 325
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=21.40 E-value=5.6e+02 Score=27.28 Aligned_cols=86 Identities=14% Similarity=0.140 Sum_probs=52.4
Q ss_pred CeEEEECCCCCCh---HHHHHHHHHHhhCCCEEEEEcC--CCCCCCCCCCcCCCHHHHHHHHHHHHHH---hCCCcEEEE
Q 008512 428 PAILLVHGFGAFL---EHYRDNIYDIADGGNRVWAITL--LGFGRSEKPNIVYTELMWSELLRDFTVE---VVGEPVHLI 499 (563)
Q Consensus 428 ~~vlllHG~~~~~---~~~~~~~~~l~~~g~~Vi~~D~--~G~G~S~~~~~~~~~~~~~~~l~~~l~~---l~~~~i~lv 499 (563)
.++|+++-+.... ......+..|.+.|+.|+-+.. ..+|.. +.....+.+++...+...+.. +...++.+.
T Consensus 113 ~plviaPamn~~m~~~p~~~~Nl~~L~~~G~~vv~P~~g~~ac~~~-g~g~~~~~~~i~~~v~~~~~~~~~~~~~~vlit 191 (390)
T TIGR00521 113 APIILAPAMNENMYNNPAVQENIKRLKDDGYIFIEPDSGLLACGDE-GKGRLAEPETIVKAAEREFSPKEDLEGKRVLIT 191 (390)
T ss_pred CCEEEEeCCChhhcCCHHHHHHHHHHHHCCcEEECCCCcccccccc-cCCCCCCHHHHHHHHHHHHhhccccCCceEEEe
Confidence 3577777654332 2345677888888888766542 222432 222345777887777776644 455667776
Q ss_pred Ee------------------chhHHHHHHHHhc
Q 008512 500 GN------------------SIGGMFLSTNLTR 514 (563)
Q Consensus 500 Gh------------------S~Gg~ia~~~a~~ 514 (563)
|- .||..++..++.+
T Consensus 192 ~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~ 224 (390)
T TIGR00521 192 AGPTREPIDPVRFISNLSSGKMGLALAEAAYKR 224 (390)
T ss_pred cCCccCCCCceeeecCCCcchHHHHHHHHHHHC
Confidence 65 3677777777665
No 326
>PRK11590 hypothetical protein; Provisional
Probab=21.27 E-value=1.8e+02 Score=27.69 Aligned_cols=39 Identities=13% Similarity=0.240 Sum_probs=27.7
Q ss_pred HHHHHHhcCCcEEEEEcChHHHHHHHHHHhC---ccEEEEcc
Q 008512 101 LRKSLKEQGSDLMIRFGRVENVIRELVEEVK---ATSVFAEE 139 (563)
Q Consensus 101 L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~---a~~V~~~~ 139 (563)
|++.|++.|..+.|..+.+...+..+++..+ +..|++++
T Consensus 104 L~~~l~~~G~~l~IvSas~~~~~~~il~~l~~~~~~~~i~t~ 145 (211)
T PRK11590 104 LTTYLLSSDADVWLITGSPQPLVEQVYFDTPWLPRVNLIASQ 145 (211)
T ss_pred HHHHHHhCCCEEEEEeCCcHHHHHHHHHHccccccCceEEEE
Confidence 3356677788888888888877777777766 45666554
No 327
>cd07227 Pat_Fungal_NTE1 Fungal patatin-like phospholipase domain containing protein 6. These are fungal Neuropathy Target Esterase (NTE), commonly referred to as NTE1. Patatin-like phospholipase. NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. This family includes NTE1 from fungi.
Probab=21.00 E-value=1.2e+02 Score=30.58 Aligned_cols=31 Identities=16% Similarity=-0.022 Sum_probs=24.4
Q ss_pred HHHHHHHhCCCcEEEEEechhHHHHHHHHhc
Q 008512 484 LRDFTVEVVGEPVHLIGNSIGGMFLSTNLTR 514 (563)
Q Consensus 484 l~~~l~~l~~~~i~lvGhS~Gg~ia~~~a~~ 514 (563)
+.+.+++.++..=.+.|.|+|+.++..+|..
T Consensus 28 VL~aLeE~gi~~d~v~GtSaGAiiga~ya~g 58 (269)
T cd07227 28 ILQALEEAGIPIDAIGGTSIGSFVGGLYARE 58 (269)
T ss_pred HHHHHHHcCCCccEEEEECHHHHHHHHHHcC
Confidence 3345566677777889999999999999875
No 328
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=20.92 E-value=95 Score=29.89 Aligned_cols=40 Identities=20% Similarity=0.246 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEcChHHHHHHHHHHhCccE
Q 008512 95 IFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATS 134 (563)
Q Consensus 95 ~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~a~~ 134 (563)
+.++.++=+.|++.|++|.|..+++...+..+++.+++..
T Consensus 91 ~~gv~e~L~~L~~~g~~l~i~T~k~~~~~~~~l~~~gl~~ 130 (220)
T COG0546 91 FPGVKELLAALKSAGYKLGIVTNKPERELDILLKALGLAD 130 (220)
T ss_pred CCCHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHhCCcc
Confidence 4556677777888888888888888888888888877763
No 329
>PF09994 DUF2235: Uncharacterized alpha/beta hydrolase domain (DUF2235); InterPro: IPR018712 This domain has no known function.
Probab=20.58 E-value=4.8e+02 Score=26.16 Aligned_cols=26 Identities=19% Similarity=0.160 Sum_probs=20.6
Q ss_pred HHh-CCCcEEEEEechhHHHHHHHHhc
Q 008512 489 VEV-VGEPVHLIGNSIGGMFLSTNLTR 514 (563)
Q Consensus 489 ~~l-~~~~i~lvGhS~Gg~ia~~~a~~ 514 (563)
+.. ...+|+++|+|=|+.+|..++..
T Consensus 86 ~~~~~gd~I~lfGFSRGA~~AR~~a~~ 112 (277)
T PF09994_consen 86 KNYEPGDRIYLFGFSRGAYTARAFANM 112 (277)
T ss_pred hccCCcceEEEEecCccHHHHHHHHHH
Confidence 444 34789999999999999888753
No 330
>COG1752 RssA Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]
Probab=20.57 E-value=1.1e+02 Score=31.18 Aligned_cols=31 Identities=13% Similarity=-0.016 Sum_probs=25.5
Q ss_pred HHHHHHHhCCCcEEEEEechhHHHHHHHHhc
Q 008512 484 LRDFTVEVVGEPVHLIGNSIGGMFLSTNLTR 514 (563)
Q Consensus 484 l~~~l~~l~~~~i~lvGhS~Gg~ia~~~a~~ 514 (563)
+.+.+++.+...-.+.|.|+|+.++..+|..
T Consensus 29 Vl~aL~e~gi~~~~iaGtS~GAiva~l~A~g 59 (306)
T COG1752 29 VLKALEEAGIPIDVIAGTSAGAIVAALYAAG 59 (306)
T ss_pred HHHHHHHcCCCccEEEecCHHHHHHHHHHcC
Confidence 4456667778888999999999999999874
No 331
>TIGR02884 spore_pdaA delta-lactam-biosynthetic de-N-acetylase. Muramic delta-lactam is an unusual constituent of peptidoglycan, found only in bacterial spores in the peptidoglycan wall, or spore cortex. The proteins in this family are PdaA (yfjS), a member of a larger family of polysaccharide deacetylases, and are specificially involved in delta-lactam biosynthesis. PdaA acts immediately after CwlD, an N-acetylmuramoyl-L-alanine amidase and performs a de-N-acetylation. PdaA may also perform the following transpeptidation for lactam ring formation, as heterologous expression in E. coli of CwlD and PdaA together is sufficient for delta-lactam production.
Probab=20.45 E-value=1.3e+02 Score=29.25 Aligned_cols=34 Identities=26% Similarity=0.314 Sum_probs=27.4
Q ss_pred CeEEEECCC-CCChHHHHHHHHHHhhCCCEEEEEc
Q 008512 428 PAILLVHGF-GAFLEHYRDNIYDIADGGNRVWAIT 461 (563)
Q Consensus 428 ~~vlllHG~-~~~~~~~~~~~~~l~~~g~~Vi~~D 461 (563)
..||++|.. ..+.+....+++.|.++||+++.++
T Consensus 187 g~IiLlHd~~~~t~~aL~~ii~~lk~~Gy~fvtl~ 221 (224)
T TIGR02884 187 GAILLLHAVSKDNAEALDKIIKDLKEQGYTFKSLD 221 (224)
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEhH
Confidence 368999975 4456778899999999999998874
No 332
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=20.44 E-value=1.6e+02 Score=30.48 Aligned_cols=38 Identities=18% Similarity=0.225 Sum_probs=17.5
Q ss_pred HHHHHHHhcCCcEEEEEcChHHHHHHHHHHhCccEEEE
Q 008512 100 DLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFA 137 (563)
Q Consensus 100 ~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~a~~V~~ 137 (563)
++-+.|++.|.++.|..|........+.++++++.++.
T Consensus 188 elL~~Lk~~G~~~aIvSgg~~~~~~~l~~~Lgld~~~a 225 (322)
T PRK11133 188 ELVLKLQALGWKVAIASGGFTYFADYLRDKLRLDAAVA 225 (322)
T ss_pred HHHHHHHHcCCEEEEEECCcchhHHHHHHHcCCCeEEE
Confidence 33444445555555555444444444444444444443
No 333
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=20.39 E-value=2.7e+02 Score=31.23 Aligned_cols=41 Identities=17% Similarity=0.260 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHhcCCcEEEEEcChHHHHHHHHHHhCccEEEE
Q 008512 96 FALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFA 137 (563)
Q Consensus 96 ~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~a~~V~~ 137 (563)
.+..++-+.|++.|+++.+..|+.......++++++++ ++.
T Consensus 408 ~~a~e~i~~Lk~~Gi~v~ilSgd~~~~a~~ia~~lgi~-~~~ 448 (562)
T TIGR01511 408 PEAKEVIQALKRRGIEPVMLTGDNRKTAKAVAKELGIN-VRA 448 (562)
T ss_pred HHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHcCCc-EEc
Confidence 55666667778889999999999999999999999997 444
Done!