Citrus Sinensis ID: 008513

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560---
Protein Sequence
MEGVAMQDQSQQQQQQQQQLVPPQPVAVERLNQAVVQQLNLEAVKTRAISLFKAISRILEDFDAYARTNTTPKWQDILGQYSMVNLELFNIVDEIRKVSKAFVVHPKNVNAENATILPVMLSSKLLPEMEIDDNSKREQLLLGMQNLPIPSQIEKLKSRIDMIGAACESAEKVLADTRKAYCFGTRQGPQILPTLDKGQALKIQEQENLLRAAVNSGEGLRLPGDQRQMTPALPMHLVDLLPVGDGVHTFSDASGMYMKNTPPLSSNSIGNQGNLLQASGAQLIGRSAASPSAATSATSFDNTTASPVPYANSPRSGTNMMNTPSPQQQQQQQQQQQQQQQQQRQKMMQLPHQQQLLAQQQFRQSQMQGLGQMSQLHDLQGQQKFQQLHGQHQMQFSQPMGHQQFQGRQLASGHVQHGIGQSQLGQGNQLNRHLSQFSGAANSALFNAAQGTSNSQMIPNMSATVSSQSLLPRMQFGLAGNNPQRSHASQMLSDQMFNMGASNPGSMMPIQQQQQQQQQQHNTQGAFGNMQPNAQNLQSNMVALQNAQQNHPNFAQQRQQNQQ
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHHHcccccHHHHHHHcHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcEEEcccccccccccccHHHHcccccccccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHcccccHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccEcccHHHHHHHHHHccccccccHHHHccHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHcHHHHHHHHHHHHHHHHHHHcEEEEEcccccHHHccHHHHHHHHHcccHccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHcHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccHccccHHccccccccccccccccccccccccccccccccccccccccccHHHcccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcccccccHHHHccHHHHHccccccHccccccccccHHHHHHcccccccccccccccHcccccHHHHHHHHcccHHHHHHHccccccccccccccccccccccccccccEccccccccccccHHHHHHHHHcccccccccccccHHHHHHHHHHHHccccccccccHHHHHHHcccHHHHccccccccHHHHHHcccc
Coil and Loop (DISEMBL)
MEGVAMQDQSQQQQQQQqqlvppqpvaVERLNQAVVQQLNLEAVKTRAISLFKAISRILEDFDayartnttpkwqdILGQYSMVNLELFNIVDEIRKVSKAFVvhpknvnaenatILPVMlsskllpemeiddnSKREQLLLgmqnlpipsqIEKLKSRIDMIGAACESAEKVLADTRKAycfgtrqgpqilptldkgqALKIQEQENLLRAAVnsgeglrlpgdqrqmtpalpmhlvdllpvgdgvhtfsdasgmymkntpplssnsignqgNLLQASGAQLigrsaaspsaatsatsfdnttaspvpyansprsgtnmmntpspqqQQQQQQQQQQQQQQQRQKMMQLPHQQQLLAQQQFRQSQMQGLGQMSQLHDLQGQQKFQQLHgqhqmqfsqpmghqqfqgrqlasghvqhgigqsqlgqgnqlnrhLSQFSGAANSALfnaaqgtsnsqmipnmsatvssqsllprmqfglagnnpqrshasQMLSDQMFnmgasnpgsmmpiqQQQQQQQQQHNtqgafgnmqpnAQNLQSNMVALQNAQQNHPNFAQQRQQNQQ
Flexible Loop (DISEMBL)
MEGVAMQDQSQQQQQQQQQLVPPQPVAVERLNQAVVQQLNLEAVKTRAISLFKAISRILEDFDAYARTNTTPKWQDILGQYSMVNLELFNIVDEIRKVSKAFVVHpknvnaenatilpVMLSSKLLPEMEIDDNSKREQLLLGMQNLPIPSQIEKLKSRIDMIGAACESAEKVLADTRKAYCFGTRQGPQILPTLDKGQALKIQEQENLLRAAVNSGEGLRLPGDQRQMTPALPMHLVDLLPVGDGVHTFSDASGMYMKNTPPLSSNSIGNQGNLLQASGAQLIGRSAASPSAATsatsfdnttaspvPYANSPRSGTNMMNTPSPQQQQQQQQQQQQQQQQQRQKMMQLPHQQQLLAQQQFRQSQMQGLGQMSQLHDLQGQQKFQQLHGQHQMQFSQPMGHQQFQGRQLASGHVQHGIGQSQLGQGNQLNRHLSQFSGAANSALFNAAQGTSNSQMIPNMSATVSSQSLLPRMQFGLAGNNPQRSHASQMLSDQMFNMGASNPGSMMPIQQQQQQQQQQHNTQGAFGNMQPNAQNLQSNMVALQNAQQNHPNFAQQRQQNQQ
Low Complexity Region (SEG)
MEGVAMqdqsqqqqqqqqqLVPPQPVAVERLNQAVVQQLNLEAVKTRAISLFKAISRILEDFDAYARTNTTPKWQDILGQYSMVNLELFNIVDEIRKVSKAFVVHPKNVNAENATILPVMLSSKLLPEMEIDDNSKREQLLLGMQNLPIPSQIEKLKSRIDMIGAACESAEKVLADTRKAYCFGTRQGPQILPTLDKGQALKIQEQENLLRAAVNSGEGLRLPGDQRQMTPALPMHLVDLLPVGDGVHTFSDASGMYMKNTPPLSSNSIGNQGNLLQASGAQLIGRsaaspsaatsatsFDNTTASPVPYANSPRSGTNMMNTPSPqqqqqqqqqqqqqqqqqrqkmmqlphqqqllaqqqfrqsqmqglgqmsqlhdlqgqqkfqqlhgqhqmqfsqPMGHQQFQGRQLASGHVQHgigqsqlgqgnqlnRHLSQFSGAANSALFNAAQGTSNSQMIPNMSATVSSQSLLPRMQFGLAGNNPQRSHASQMLSDQMFNMGASNPGSMMPIqqqqqqqqqqHNTQGAFGNMQPNAQNLQSNMVALQNAQQNHPNFAqqrqqnqq
Disordered region (IsUnstruct)
*****************************RLNQAVVQQLNLEAVKTRAISLFKAISRILEDFDAYARTNTTPKWQDILGQYSMVNLELFNIVDEIRKVSKAFVVHPKNVNAENATILPVMLSSKLL**************LLGMQNLPIPSQIEKLKSRIDMIGAACESAEKVLADTRKAYCFGTRQGPQILPTLDKGQAL*******************************LPMHLVDLLPVGDGVHTFS************************************************************************************************************************************************************************************************************************************************************************************************************************
Disordered Region (DISOPRED)
*********************************AVVQQLNLEAVKTRAISLFKAISRILEDFDAYARTNTTPKWQDILGQYSMVNLELFNIVDEIRKVSKAFVVHPKNVNAENATILPVMLSSKLLPEMEI***************LPIPSQIEKLKSRIDMIGAACESAEKVLA**************************************VN**********************V**LP**D******************************************************************************************************************************************************************************************************************************************************************************************************************************
Disordered Region (DISEMBL)
**********************PQPVAVERLNQAVVQQLNLEAVKTRAISLFKAISRILEDFDAYARTNTTPKWQDILGQYSMVNLELFNIVDEIRKVSKAFVVHPKNVNAENATILPVMLSSKLLPEMEIDDNSKREQLLLGMQNLPIPSQIEKLKSRIDMIGAACESAEKVLADTRKAYCFGTRQGPQILPTLDKGQALKIQEQENLLRAAVNSGEGLRLPGDQRQMTPALPMHLVDLLPVGDGVHTFSDASGMYMKNTPPLSSNSIGNQGNLLQASGAQL******************NTTASPVPYANSPRSGTNM****************************************************MSQLHDLQG****************************************SQLGQGNQLNRHLSQFSGAANSALFNAAQGTSNSQMIPNMSATVSSQSLLPRMQFGLAGNNPQRSHASQMLSDQMFNMGASNPGS******************GAFGNMQPNAQNLQSNMVALQNAQQ**************
Disordered Region (DISPRO)
*********************PPQPVAVERLNQAVVQQLNLEAVKTRAISLFKAISRILEDFDAYARTNTTPKWQDILGQYSMVNLELFNIVDEIRKVSKAFVVHPKNVNAENATILPVMLSSKLLPEMEIDDNSKREQLLLGMQNLPIPSQIEKLKSRIDMIGAACESAEKVLADTRKAYCFGTRQGPQILPTLDKGQALKIQEQENLLRAAVNSGEGLRLPGDQRQMTPALPMHLVDLLPVGDGVHTF**********TPPLSSNS***QGNLL*ASG***I**********TSATSFDNTTASPVPYANSP***************************************************************************************************************************SGAANSALFN*********************SLLPRMQFGLAGNNPQRSHASQMLSDQMFNMGASNPGSMMP******************G***********************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEGVAMQDQSQQQQQQQQQLVPPQPVAVERLNQAVVQQLNLEAVKTRAISLFKAISRILEDFDAYARTNTTPKWQDILGQYSMVNLELFNIVDEIRKVSKAFVVHPKNVNAENATILPVMLSSKLLPEMEIDDNSKREQLLLGMQNLPIPSQIEKLKSRIDMIGAACESAEKVLADTRKAYCFGTRQGPQILPTLDKGQALKIQEQENLLRAAVNSGEGLRLPGDQRQMTPALPMHLVDLLPVGDGVHTFSDASGMYMKNTPPLSSNSIGNQGNLLQASGAQLIGRSAASPSAATSATSFDNTTASPVPYANSPRSGTNMMNTPSPQQQQQQQQQQQQQQQQQRQKMMQLPHQQQLLAQQQFRQSQMQGLGQMSQLHDLQGQQKFQQLHGQHQMQFSQPMGHQQFQGRQLASGHVQHGIGQSQLGQGNQLNRHLSQFSGAANSALFNAAQGTSNSQMIPNMSATVSSQSLLPRMQFGLAGNNPQRSHASQMLSDQMFNMGASNPGSMMPIQQQQQQQQQQHNTQGAFGNMQPNAQNLQSNMVALQNAQQNHPNFAQQRQQNQQ
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	563	2.2.26 [Sep-21-2011]
Q4V3C1	524	Mediator of RNA polymeras	yes	no	0.893	0.959	0.634	1e-159
Q54B97	524	Putative mediator of RNA	yes	no	0.140	0.150	0.285	0.0002

>sp|Q4V3C1|MED8_ARATH Mediator of RNA polymerase II transcription subunit 8 OS=Arabidopsis thaliana GN=MED8 PE=1 SV=1

 Score =  561 bits (1446), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 339/534 (63%), Positives = 400/534 (74%), Gaps = 31/534 (5%)

Query: 27  AVERLNQAVVQQLNLEAVKTRAISLFKAISRILEDFDAYARTNTTPKWQDILGQYSMVNL 86
             E+LN  + ++LNLE++KTRA+SL KAI+RILEDFDAY RTNTTPKWQDILGQYSMVNL
Sbjct: 13  VAEKLNPKLEKELNLESLKTRAVSLAKAIARILEDFDAYGRTNTTPKWQDILGQYSMVNL 72

Query: 87  ELFNIVDEIRKVSKAFVVHPKNVNAENATILPVMLSSKLLPEMEIDDNSKREQLLLGMQN 146
           ELFNIV+E+++VS AFVV PKNVNA NA ILPVMLSSKLLPEME DDN+KREQLL G+Q+
Sbjct: 73  ELFNIVEEVKRVSNAFVVLPKNVNAMNAAILPVMLSSKLLPEMETDDNAKREQLLQGVQS 132

Query: 147 LPIPSQIEKLKSRIDMIGAACESAEKVLADTRKAYCFGTRQGPQILPTLDKGQALKIQEQ 206
           LPIP QIE+LK+R+DMI AACE+AE+VLADTRKAY FGTRQGP +LPT+DKGQA KIQEQ
Sbjct: 133 LPIPMQIERLKARMDMIAAACENAERVLADTRKAYGFGTRQGPSMLPTMDKGQAAKIQEQ 192

Query: 207 ENLLRAAVNSGEGLRLPGDQRQMTPALPMHLVDLLPVGDGVHTFSDASGMYMKNTPPLSS 266
           E +LR AVN G+G +LP DQRQ+T ALP HL D+L + D             K   P  S
Sbjct: 193 EKMLRDAVNDGKGTQLPPDQRQITTALPPHLADVLIINDAG-----------KIALPGQS 241

Query: 267 NSIGNQGNLLQASGAQLIGRSAASPSAATSATSFDNTTASPVPYANSPRSGTNMMNTPSP 326
           N+I NQG ++Q SG Q +GRSAASPS      +FDNTT SP+PY+NSPR+ T M+N PSP
Sbjct: 242 NNINNQG-MMQVSGTQFVGRSAASPSGP----NFDNTT-SPLPYSNSPRA-TGMVNVPSP 294

Query: 327 QQQQQQQQQQQQQQQ-QQRQKMMQLPHQQQLLAQQQFRQSQMQGLG--QMSQLHDLQG-- 381
           Q Q QQQQ QQQQQ+ +  Q       Q     QQQ RQS MQGLG  Q+  LHD+ G  
Sbjct: 295 QHQIQQQQFQQQQQRSKLMQLPQHQQQQLLAQQQQQLRQSSMQGLGQSQIPALHDMHGQA 354

Query: 382 QQKFQQLHGQHQMQFSQPMG-HQQFQGRQLASGHVQHGIGQSQLGQGNQLNRHLSQFSGA 440
           QQKFQ  HGQHQM +SQPMG HQQFQ RQL+ GH+QH + Q QL     +NRHL+QFSG 
Sbjct: 355 QQKFQTSHGQHQMPYSQPMGAHQQFQARQLSGGHIQHSMSQGQLNPA--MNRHLNQFSGG 412

Query: 441 ANSALFNAAQGTSNSQMIPNMSATVSSQSLLPRM-QFGLAGNNPQRSHASQMLSDQMFNM 499
           ANSALF +AQG+ +SQMIPNMS ++ SQ+L+PRM QFG++G NPQRSH+SQML DQMFN 
Sbjct: 413 ANSALFTSAQGSPSSQMIPNMS-SMQSQTLVPRMQQFGVSGTNPQRSHSSQMLGDQMFN- 470

Query: 500 GASNPGSMMPIQQQQQQQQQQHNTQGAFGNMQPNAQNLQSNMVALQNAQQNHPN 553
             S        Q QQ QQQQQ   QG +GNMQ N Q+LQ N + +QNAQQ H N
Sbjct: 471 -TSGMMQTQQTQIQQSQQQQQQQQQGGYGNMQTNQQSLQPNNM-MQNAQQRHQN 522

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. Regulator of both plant defense and flowering time. Involved in pollen tube growth.
Arabidopsis thaliana (taxid: 3702)

>sp|Q54B97|MED8_DICDI Putative mediator of RNA polymerase II transcription subunit 8 OS=Dictyostelium discoideum GN=med8 PE=3 SV=1

 Score = 48.1 bits (113), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 12/91 (13%)

Query: 40  NLEAVKTRAISLFKAISRILEDFDAYARTNTTPKWQDILGQYSMVNLELFNIVDEIRKVS 99
           NL+++K +A           ED      T +T  W+DILG + +++ E  ++V E+  + 
Sbjct: 9   NLDSIKAKA-----------EDIRNLLLTTSTGNWEDILGHFVVLSGEYGSLVREVNNIY 57

Query: 100 KAFVVHPKNVNAENATILPVMLSSKLLPEME 130
            +  V P+ V  +   ++P +L +KL PE+E
Sbjct: 58  DSVAVFPEQVTGD-PNLIPNLLRTKLSPELE 87


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.313    0.125    0.344 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 188,813,878
Number of Sequences: 539616
Number of extensions: 7908466
Number of successful extensions: 198203
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1381
Number of HSP's successfully gapped in prelim test: 557
Number of HSP's that attempted gapping in prelim test: 48069
Number of HSP's gapped (non-prelim): 63347
length of query: 563
length of database: 191,569,459
effective HSP length: 123
effective length of query: 440
effective length of database: 125,196,691
effective search space: 55086544040
effective search space used: 55086544040
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 64 (29.3 bits)

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. May play a role as a target recruitment subunit in E3 ubiquitin-protein ligase complexes and thus in ubiquitination and subsequent proteasomal degradation of target proteins.

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	563
255544520	549	conserved hypothetical protein [Ricinus	0.950	0.974	0.810	0.0
297735745	558	unnamed protein product [Vitis vinifera]	0.923	0.931	0.785	0.0
224109970	530	predicted protein [Populus trichocarpa]	0.916	0.973	0.790	0.0
359483288	605	PREDICTED: uncharacterized protein LOC10	0.927	0.862	0.724	0.0
449453344	546	PREDICTED: mediator of RNA polymerase II	0.905	0.934	0.742	0.0
356542044	515	PREDICTED: uncharacterized protein LOC10	0.886	0.968	0.744	0.0
357482287	544	hypothetical protein MTR_5g013930 [Medic	0.918	0.950	0.744	0.0
356550701	532	PREDICTED: uncharacterized protein LOC10	0.905	0.958	0.706	1e-176
242045572	544	hypothetical protein SORBIDRAFT_02g03268	0.886	0.917	0.603	1e-159
297814606	514	hypothetical protein ARALYDRAFT_484217 [	0.879	0.963	0.639	1e-157

>gi|255544520|ref|XP_002513321.1| conserved hypothetical protein [Ricinus communis] gi|223547229|gb|EEF48724.1| conserved hypothetical protein [Ricinus communis]

 Score =  798 bits (2062), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/544 (81%), Positives = 473/544 (86%), Gaps = 9/544 (1%)

Query: 16  QQQQLVPPQPVAVERLNQAVVQQLNLEAVKTRAISLFKAISRILEDFDAYARTNTTPKWQ 75
           Q QQ   PQ V  ERLN AV QQLNLE+VKTRAISLFKAISRILE+FDAYAR+N  PKWQ
Sbjct: 3   QDQQPSAPQMVMAERLNPAVQQQLNLESVKTRAISLFKAISRILEEFDAYARSNANPKWQ 62

Query: 76  DILGQYSMVNLELFNIVDEIRKVSKAFVVHPKNVNAENATILPVMLSSKLLPEMEIDDNS 135
           DILGQYSMVNLELFNIVDEI+KVSKAFVVHPKNVNAENATILPVMLSSKLL EMEIDDNS
Sbjct: 63  DILGQYSMVNLELFNIVDEIKKVSKAFVVHPKNVNAENATILPVMLSSKLLLEMEIDDNS 122

Query: 136 KREQLLLGMQNLPIPSQIEKLKSRIDMIGAACESAEKVLADTRKAYCFGTRQGPQILPTL 195
           KREQLL G+QNLP+ SQIEKLK+RIDMI AACESAEKVLADTRKAY  GTRQGP I+PTL
Sbjct: 123 KREQLLQGLQNLPVSSQIEKLKTRIDMIAAACESAEKVLADTRKAYQIGTRQGPTIIPTL 182

Query: 196 DKGQALKIQEQENLLRAAVNSGEGLRLPGDQRQMTPALPMHLVDLLPVGDGVHTFSDASG 255
           DK QA KIQEQENLLRAAVN GEGL +  DQRQ+T ALPMHL D+L VGDGVH FSD++G
Sbjct: 183 DKTQAAKIQEQENLLRAAVNFGEGLGMAADQRQITSALPMHLADVLTVGDGVHNFSDSAG 242

Query: 256 MYMKNTPPLSSNSIGNQGNLLQASGAQLIGRSAASPSAATSATSFDNTTASPVPYANSPR 315
           MYMK+TPPLSSNSI NQG LLQASG+ L+GRSAASPSA T+ TSFDNTT SP+PYANSPR
Sbjct: 243 MYMKSTPPLSSNSINNQGPLLQASGSALMGRSAASPSAGTNTTSFDNTTTSPLPYANSPR 302

Query: 316 SGTNMMNTPSPQQQQQQQQQQQQQQQQQRQKMMQLPHQQQLLAQQQFRQSQMQGLG--QM 373
           SGTNMMNTPSPQQQ QQQQQQQQ+     QK+MQLP  QQ L  QQ RQS MQGLG  Q+
Sbjct: 303 SGTNMMNTPSPQQQTQQQQQQQQR-----QKIMQLPQHQQQLLAQQLRQSSMQGLGQNQL 357

Query: 374 SQLHDL--QGQQKFQQLHGQHQMQFSQPMGHQQFQGRQLASGHVQHGIGQSQLGQGNQLN 431
            QLHDL  QGQQKFQ LHGQHQMQFSQ +GHQQFQGRQL SGHVQHG+GQS L QGN LN
Sbjct: 358 PQLHDLQGQGQQKFQPLHGQHQMQFSQSLGHQQFQGRQLPSGHVQHGMGQSPLNQGNPLN 417

Query: 432 RHLSQFSGAANSALFNAAQGTSNSQMIPNMSATVSSQSLLPRMQFGLAGNNPQRSHASQM 491
           RHLSQFSG ANSALFNAAQG+ N+QMIPNMSAT+SSQ L+PRMQFGL G+N QRSHASQ+
Sbjct: 418 RHLSQFSGTANSALFNAAQGSPNTQMIPNMSATMSSQPLVPRMQFGLTGSNAQRSHASQI 477

Query: 492 LSDQMFNMGASNPGSMMPIQQQQQQQQQQHNTQGAFGNMQPNAQNLQSNMVALQNAQQNH 551
           L+DQMFNMG SNPGSMMPIQ QQ QQQQQ  +QGAFGNM PNAQNLQS+MVALQNA QNH
Sbjct: 478 LNDQMFNMGVSNPGSMMPIQPQQSQQQQQLGSQGAFGNMPPNAQNLQSSMVALQNASQNH 537

Query: 552 PNFA 555
           PNF 
Sbjct: 538 PNFV 541

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297735745|emb|CBI18432.3| unnamed protein product [Vitis vinifera]

 Score =  750 bits (1937), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/542 (78%), Positives = 458/542 (84%), Gaps = 22/542 (4%)

Query: 22  PPQPVAVERLNQAVVQQLNLEAVKTRAISLFKAISRILEDFDAYARTNTTPKWQDILGQY 81
           PP+P AVERLN AV QQLNLE+VKTRAISL+KAISRILED DA AR N  PKWQDILGQ+
Sbjct: 21  PPKP-AVERLNPAVQQQLNLESVKTRAISLYKAISRILEDIDAVARANAVPKWQDILGQF 79

Query: 82  SMVNLELFNIVDEIRKVSKAFVVHPKNVNAENATILPVMLSSKLLPEMEIDDNSKREQLL 141
           SMVNLELFNI+++I+KVSKAFVVHPKNVN EN+TILPVMLSSKLLPEME DDN K+EQLL
Sbjct: 80  SMVNLELFNIMEDIKKVSKAFVVHPKNVNVENSTILPVMLSSKLLPEMETDDNFKKEQLL 139

Query: 142 LGMQNLPIPSQIEKLKSRIDMIGAACESAEKVLADTRKAYCFGTRQGPQILPTLDKGQAL 201
            GMQNLPI  QIEKLK+RIDMIGAACESAEKVLA+TRKAYCFGTRQGP ++P +DK QA 
Sbjct: 140 HGMQNLPISVQIEKLKTRIDMIGAACESAEKVLAETRKAYCFGTRQGPTMVP-IDKVQAA 198

Query: 202 KIQEQENLLRAAVNSGEGLRLPGDQRQMTPALPMHLVDLLPVGDGVHTFSDASGMYMKNT 261
           KIQEQENLLRAAVN GE LR+P DQR++T  LPMHLVD+L VGDGV TFSDASGMYMKNT
Sbjct: 199 KIQEQENLLRAAVNFGEVLRIPLDQRKITSTLPMHLVDVLTVGDGVQTFSDASGMYMKNT 258

Query: 262 PPLSSNSIGNQGNLLQASGAQLIGRSAASPSAATSATSFDNTTASPVPYANSPRSGTNMM 321
           PP S  SI     LLQASGAQLIGRSAASPS  T ATSFDNTT SP+PYANSPRSGTNMM
Sbjct: 259 PPQS--SINATQGLLQASGAQLIGRSAASPSGPTGATSFDNTTTSPLPYANSPRSGTNMM 316

Query: 322 NTPSPQQQQQQQQQQQQQQQQQRQKMMQL-----PHQQQLLAQQQFRQSQMQGLG--QMS 374
           NTPSPQQQ Q QQQQQQQQQQQ+Q+  +L     PHQQQLLA QQ RQS M GLG  Q+ 
Sbjct: 317 NTPSPQQQTQHQQQQQQQQQQQQQQRQKLMQHMSPHQQQLLA-QQIRQSSMPGLGQNQLP 375

Query: 375 QLHDLQG--QQKFQQLHGQHQMQFSQPMGHQQFQGRQLASGHVQHGIGQSQLGQGNQLNR 432
           QLHDLQG  QQKFQ L GQ QMQFSQ MGHQQFQ RQL SGHVQHG+GQSQL QGNQLNR
Sbjct: 376 QLHDLQGQAQQKFQPLPGQQQMQFSQTMGHQQFQSRQLPSGHVQHGMGQSQLSQGNQLNR 435

Query: 433 HLSQFSGAANSALFNAAQGTSNSQMIPNMSATVSSQSLLPRMQFGLAGNNPQRSHASQML 492
           HLSQFSG AN+ALFNAAQGT ++QMI NMSAT+ SQSLLPRMQ GLAG NPQRSH   +L
Sbjct: 436 HLSQFSGGANNALFNAAQGTPSTQMISNMSATMPSQSLLPRMQLGLAG-NPQRSH---LL 491

Query: 493 SDQMFNMGASNPGSMMPIQQQQQQQQQQHNTQGAFGNMQPNAQNLQSNMVALQNAQQNHP 552
           SDQMFNMGA+NPG         QQQQQQH +QGAFGNMQPNAQNLQ  MVALQNA QNHP
Sbjct: 492 SDQMFNMGAANPGG----MMPMQQQQQQHGSQGAFGNMQPNAQNLQPGMVALQNATQNHP 547

Query: 553 NF 554
           NF
Sbjct: 548 NF 549

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224109970|ref|XP_002315372.1| predicted protein [Populus trichocarpa] gi|222864412|gb|EEF01543.1| predicted protein [Populus trichocarpa]

 Score =  734 bits (1895), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 423/535 (79%), Positives = 462/535 (86%), Gaps = 19/535 (3%)

Query: 26  VAVERLNQAVVQQLNLEAVKTRAISLFKAISRILEDFDAYARTNTTPKWQDILGQYSMVN 85
           V  ERLN AV QQLNLE+VKTRAISLFKA++RILEDFDAYARTNTTPKWQDILGQYSMVN
Sbjct: 2   VVPERLNHAVQQQLNLESVKTRAISLFKALTRILEDFDAYARTNTTPKWQDILGQYSMVN 61

Query: 86  LELFNIVDEIRKVSKAFVVHPKNVNAENATILPVMLSSKLLPEMEIDDNSKREQLLLGMQ 145
           LELF+IVDEI+KVSKAFVVHPKNVNAENATILPVMLSSKLLPEME+DDNSKRE LL GMQ
Sbjct: 62  LELFSIVDEIKKVSKAFVVHPKNVNAENATILPVMLSSKLLPEMEMDDNSKREHLLQGMQ 121

Query: 146 NLPIPSQIEKLKSRIDMIGAACESAEKVLADTRKAYCFGTRQGPQILPTLDKGQALKIQE 205
           +LPI SQIEKLK+RIDMI AACE AEKVLADTRKAY FGTRQGP  LPTLDK QA KI E
Sbjct: 122 SLPISSQIEKLKARIDMIAAACEGAEKVLADTRKAYQFGTRQGPTTLPTLDKAQAAKILE 181

Query: 206 QENLLRAAVNSGEGLRLPGDQRQMTPALPMHLVDLLPVGDGVHTFSDASGMYMKNTPPLS 265
           QENLLRAAVN GEGLR+ GDQRQMT ALP+HLVD+L V DG+H+FSD+SGMYMKNTPP+ 
Sbjct: 182 QENLLRAAVNGGEGLRVTGDQRQMTSALPVHLVDVLAVSDGMHSFSDSSGMYMKNTPPI- 240

Query: 266 SNSIGNQGNLL-QASGAQLIGRSAASPSAATSATSFDNTTASPVPYANSPRSGTNMMNTP 324
           SNSI NQG+LL Q +G  L GRSAASPSAATSATSFD+TT SP+PYANSPRSGTNMMNTP
Sbjct: 241 SNSINNQGSLLQQPTGTPLHGRSAASPSAATSATSFDHTTPSPLPYANSPRSGTNMMNTP 300

Query: 325 SPQQQQQQQQQQQQQQQQQRQKMMQLPHQQQLLAQQQFRQSQMQGLG--QMSQLHDL--Q 380
           SPQQQ QQQQQQQQQQQQ+++          LLAQQQ RQS +Q LG  QMSQ+HDL  Q
Sbjct: 301 SPQQQVQQQQQQQQQQQQRQKI---------LLAQQQLRQSSLQALGQNQMSQMHDLQSQ 351

Query: 381 GQQKFQQLHGQHQMQFSQPMGHQQFQGRQLASGHVQHGIGQSQLGQGNQLNRHLSQFSGA 440
           GQQKFQ LHGQHQMQ+SQP+GHQQFQ RQL+SGHVQHG+GQSQL QGNQLNRHLSQFS A
Sbjct: 352 GQQKFQPLHGQHQMQYSQPVGHQQFQSRQLSSGHVQHGMGQSQLNQGNQLNRHLSQFSSA 411

Query: 441 ANSALFNAAQGTSNSQMIPNMSATVSSQSLLPRMQFGLAGNNPQRSHASQMLSDQMFNMG 500
           AN++LFN  QG  N+QMIPNMS+T+SSQ  + RMQFGLAGNNPQRS AS +L+DQM+NMG
Sbjct: 412 ANTSLFNTGQGAPNTQMIPNMSSTMSSQPPVTRMQFGLAGNNPQRSLASTVLNDQMYNMG 471

Query: 501 ASNPGSMMPIQQQQQQQQQQHNTQGAFGNMQPNAQNLQSNMVALQNAQQNHPNFA 555
            SNPG         QQQQQQ  +QGAFGNMQPNAQNLQS+M ALQNA QNHPNFA
Sbjct: 472 VSNPGG----MMPMQQQQQQLGSQGAFGNMQPNAQNLQSSMAALQNASQNHPNFA 522

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359483288|ref|XP_002267562.2| PREDICTED: uncharacterized protein LOC100247963 [Vitis vinifera]

 Score =  729 bits (1883), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 425/587 (72%), Positives = 460/587 (78%), Gaps = 65/587 (11%)

Query: 22  PPQPVAVERLNQAVVQQLNLEAVKTRAISLFKAISRILEDFDAYARTNTTPKWQDILGQY 81
           PP+P AVERLN AV QQLNLE+VKTRAISL+KAISRILED DA AR N  PKWQDILGQ+
Sbjct: 21  PPKP-AVERLNPAVQQQLNLESVKTRAISLYKAISRILEDIDAVARANAVPKWQDILGQF 79

Query: 82  SMVNLELFNIVDEIRKVSKAFVVHPKNVNAENATILPVMLSSKLLPEMEIDDNSKREQLL 141
           SMVNLELFNI+++I+KVSKAFVVHPKNVN EN+TILPVMLSSKLLPEME DDN K+EQLL
Sbjct: 80  SMVNLELFNIMEDIKKVSKAFVVHPKNVNVENSTILPVMLSSKLLPEMETDDNFKKEQLL 139

Query: 142 LGMQNLPIPSQIEKLKSRIDMIGAACESAEKVLADTRKAYCFGTRQGPQILPTLDKGQAL 201
            GMQNLPI  QIEKLK+RIDMIGAACESAEKVLA+TRKAYCFGTRQGP ++P +DK QA 
Sbjct: 140 HGMQNLPISVQIEKLKTRIDMIGAACESAEKVLAETRKAYCFGTRQGPTMVP-IDKVQAA 198

Query: 202 KIQEQENLLRAAVNSGEGLRLPGDQRQMTPALPMHLVDLLPVGDGVHTFSDASGMYMKNT 261
           KIQEQENLLRAAVN GE LR+P DQR++T  LPMHLVD+L VGDGV TFSDASGMYMKNT
Sbjct: 199 KIQEQENLLRAAVNFGEVLRIPLDQRKITSTLPMHLVDVLTVGDGVQTFSDASGMYMKNT 258

Query: 262 PPLSSNS-------IGNQGNLLQ------------------------------------- 277
           PP SS +       +  QG +L                                      
Sbjct: 259 PPQSSINATQGLLQVVEQGEVLLVLSHLFCSTISLLILPNLSSFIPLLDALHVASQLNSK 318

Query: 278 -ASGAQLIGRSAASPSAATSATSFDNTTASPVPYANSPRSGTNMMNTPSPQQQQQQQQQQ 336
            ASGAQLIGRSAASPS  T ATSFDNTT SP+PYANSPRSGTNMMNTPSPQQQ Q QQQQ
Sbjct: 319 IASGAQLIGRSAASPSGPTGATSFDNTTTSPLPYANSPRSGTNMMNTPSPQQQTQHQQQQ 378

Query: 337 QQQQQQQRQKMMQL-----PHQQQLLAQQQFRQSQMQGLGQ--MSQLHDLQGQ--QKFQQ 387
           QQQQQQQ+Q+  +L     PHQQQLLAQQ  RQS M GLGQ  + QLHDLQGQ  QKFQ 
Sbjct: 379 QQQQQQQQQQRQKLMQHMSPHQQQLLAQQ-IRQSSMPGLGQNQLPQLHDLQGQAQQKFQP 437

Query: 388 LHGQHQMQFSQPMGHQQFQGRQLASGHVQHGIGQSQLGQGNQLNRHLSQFSGAANSALFN 447
           L GQ QMQFSQ MGHQQFQ RQL SGHVQHG+GQSQL QGNQLNRHLSQFSG AN+ALFN
Sbjct: 438 LPGQQQMQFSQTMGHQQFQSRQLPSGHVQHGMGQSQLSQGNQLNRHLSQFSGGANNALFN 497

Query: 448 AAQGTSNSQMIPNMSATVSSQSLLPRMQFGLAGNNPQRSHASQMLSDQMFNMGASNPGSM 507
           AAQGT ++QMI NMSAT+ SQSLLPRMQ GLAG NPQRSH   +LSDQMFNMGA+NPG  
Sbjct: 498 AAQGTPSTQMISNMSATMPSQSLLPRMQLGLAG-NPQRSH---LLSDQMFNMGAANPGG- 552

Query: 508 MPIQQQQQQQQQQHNTQGAFGNMQPNAQNLQSNMVALQNAQQNHPNF 554
                  QQQQQQH +QGAFGNMQPNAQNLQ  MVALQNA QNHPNF
Sbjct: 553 ---MMPMQQQQQQHGSQGAFGNMQPNAQNLQPGMVALQNATQNHPNF 596

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449453344|ref|XP_004144418.1| PREDICTED: mediator of RNA polymerase II transcription subunit 8-like [Cucumis sativus]

 Score =  715 bits (1846), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/535 (74%), Positives = 447/535 (83%), Gaps = 25/535 (4%)

Query: 26  VAVERLNQAVVQQLNLEAVKTRAISLFKAISRILEDFDAYARTNTTPKWQDILGQYSMVN 85
           V  ERLNQAV QQLNLEA+K RA +LFKAISRILEDFD Y RTNTTPKWQDILGQYSMVN
Sbjct: 24  VFAERLNQAVQQQLNLEALKNRATTLFKAISRILEDFDVYGRTNTTPKWQDILGQYSMVN 83

Query: 86  LELFNIVDEIRKVSKAFVVHPKNVNAENATILPVMLSSKLLPEMEIDDNSKREQLLLGMQ 145
           LELFNIVDEI+KVSKAFVVHPKNVNAEN+TILPVMLSSKLLPEME+DDNSKREQLLLGM 
Sbjct: 84  LELFNIVDEIKKVSKAFVVHPKNVNAENSTILPVMLSSKLLPEMEVDDNSKREQLLLGMH 143

Query: 146 NLPIPSQIEKLKSRIDMIGAACESAEKVLADTRKAYCFGTRQGPQILPTLDKGQALKIQE 205
           N+P+ +QIEKLK+RI+MIGAACESAEK+LA+TRKAYCFG RQGP I PTLDK QA KIQE
Sbjct: 144 NMPVSTQIEKLKTRIEMIGAACESAEKILAETRKAYCFGMRQGPAIAPTLDKAQAAKIQE 203

Query: 206 QENLLRAAVNSGEGLRLPGDQRQMTPALPMHLVDLLPVGDGVHTFSDASGMYMKNTPPLS 265
           QENLLRAAVN GEGLRLPG+QRQ+TP LPMHL+D+L  GDGV +F++ SGMY K+T PL+
Sbjct: 204 QENLLRAAVNFGEGLRLPGEQRQITPTLPMHLIDVLNAGDGVQSFNETSGMYAKST-PLT 262

Query: 266 SNSIGNQGNLLQASGAQLIGRSAASPSAATSATSFDNTTASPVPYANSPRSGTNMMNTPS 325
           SN+I +QG ++Q  G+QL+GRSAASPS ATSATSFDN+T SP+PYANSPRS  N+MNTPS
Sbjct: 263 SNNISSQGAVIQPPGSQLVGRSAASPSGATSATSFDNST-SPMPYANSPRSSANVMNTPS 321

Query: 326 PQQQQQQQQQQQQQQQQQRQKMMQLPHQQQLLAQQQFRQSQMQGLGQMSQLHDLQGQQKF 385
           PQQQ QQQQQQQ QQ QQR+ M  LP  Q LLAQQQ RQS MQG+G              
Sbjct: 322 PQQQTQQQQQQQLQQVQQRKLM--LPQHQHLLAQQQMRQSSMQGIG-------------- 365

Query: 386 QQLHGQHQMQFSQPMGHQQFQGRQLASGHVQHGIGQSQLGQGNQLNRHLSQFSGAANSAL 445
            Q+HGQHQMQFSQP+ HQQFQGRQ++SGHVQHGI QSQLGQGNQ+NRHL QFSGAANS+L
Sbjct: 366 -QIHGQHQMQFSQPLAHQQFQGRQMSSGHVQHGITQSQLGQGNQMNRHLHQFSGAANSSL 424

Query: 446 FNAAQGTSNSQMIPNMSATVSSQSLLPRMQFGLAGNNPQRSHASQMLSDQMFNMGASNPG 505
           FN AQ T  SQMIPN+SAT+SSQ L+ RMQ GL+G N QR+HASQ+LSDQ+F MG  +  
Sbjct: 425 FNVAQTTPTSQMIPNISATMSSQPLMSRMQHGLSGTNLQRNHASQILSDQIF-MGGGSAS 483

Query: 506 SMMPIQQQQQQQQQQHN-----TQGAFGNMQPNAQNLQSNMVALQNAQQNHPNFA 555
            MMP+QQQQQ QQQQ       +QGAFGNMQ NAQ+LQS +V LQN QQ HPNF 
Sbjct: 484 GMMPMQQQQQAQQQQQQQAQLASQGAFGNMQANAQSLQSGLVPLQNMQQTHPNFG 538

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356542044|ref|XP_003539481.1| PREDICTED: uncharacterized protein LOC100785628 [Glycine max]

 Score =  687 bits (1773), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/540 (74%), Positives = 438/540 (81%), Gaps = 41/540 (7%)

Query: 31  LNQAVVQQLNLEAVKTRAISLFKAISRILEDFDAYARTNTTPKWQDILGQYSMVNLELFN 90
           LNQAV QQLNL+ VKTRAISLFKAISRILEDF+AY RTN+TPKWQDILGQYSMVNLELFN
Sbjct: 10  LNQAVQQQLNLKQVKTRAISLFKAISRILEDFEAYGRTNSTPKWQDILGQYSMVNLELFN 69

Query: 91  IVDEIRKVSKAFVVHPKNVNAENATILPVMLSSKLLPEMEIDDNSKREQLLLGMQNLPIP 150
           IVD+I+KVSKAFVVHPKNVNAENATILPVMLSSKLLPEME DD +KR+QLLLGMQNLPI 
Sbjct: 70  IVDDIKKVSKAFVVHPKNVNAENATILPVMLSSKLLPEMETDDTAKRDQLLLGMQNLPIG 129

Query: 151 SQIEKLKSRIDMIGAACESAEKVLADTRKAYCFGTRQGPQILPTLDKGQALKIQEQENLL 210
            Q+EKLK+R+D+I AACE AEKVLADTRKAYCFGTRQGP I PTLDKGQA KIQEQENLL
Sbjct: 130 MQMEKLKARLDLISAACEGAEKVLADTRKAYCFGTRQGPAIAPTLDKGQAAKIQEQENLL 189

Query: 211 RAAVNSGEGLRLPGDQRQMTPA-LPMHLVDLLPVGDGVHTFSDASGMYMKNTPPLSSNSI 269
           R+AVN+G+GLR+PGDQR +TPA  P+HL D LPV       +D +       P LSSN++
Sbjct: 190 RSAVNAGDGLRIPGDQRHITPAQPPLHLADALPV-----IVNDPTAQ-----PQLSSNTM 239

Query: 270 GNQGNLLQASGA-QLIGRSAASPSAATSATSFDNTTASPVPYANSPRSGTNMMNTPSPQQ 328
             Q +LLQ S A QL+GRSAASPS ATS TSFDNTTASP+PYANSPRS TNMMNTPS   
Sbjct: 240 PAQNSLLQTSSASQLLGRSAASPSGATSTTSFDNTTASPIPYANSPRSSTNMMNTPS--P 297

Query: 329 QQQQQQQQQQQQQQQRQKMMQLPHQQQ-----LLAQQQFRQSQMQGLGQMSQLHDLQGQQ 383
           Q Q  QQQ Q QQQQRQK+MQLP QQQ     L  QQQFRQS MQGLG            
Sbjct: 298 QPQTTQQQPQVQQQQRQKLMQLPKQQQQHHQILAQQQQFRQSAMQGLG------------ 345

Query: 384 KFQQLHGQHQMQFSQPMGHQQFQGRQLASGHVQHGIGQSQLGQGNQLNRHLSQFSGAANS 443
              QLHGQHQMQFSQP+GHQQFQGRQL SGHVQHGIGQSQL QGNQ+ R LSQFSG ANS
Sbjct: 346 ---QLHGQHQMQFSQPLGHQQFQGRQLPSGHVQHGIGQSQLNQGNQMTR-LSQFSGPANS 401

Query: 444 ALFNAAQGTSNSQMIPNMSATVSSQSLLPRMQFGLAGNNPQRSHASQMLSDQMFNMGASN 503
           ALF+AAQ T N+QMIPN+S T+ SQSLL R QFGL+GNNPQRSH SQMLSDQMFNMG  N
Sbjct: 402 ALFSAAQTTPNTQMIPNISGTLPSQSLLQRTQFGLSGNNPQRSHPSQMLSDQMFNMGGGN 461

Query: 504 PGSMMPIQQQQQQQQQQHNTQGAFGNMQPNAQNLQSNMVALQNAQQNHPNFAQQRQQNQQ 563
           PG MMPI     QQQQQH +Q AFG+M  NAQNLQS +V LQN QQNHPNF+QQRQQN Q
Sbjct: 462 PGGMMPI-----QQQQQHGSQ-AFGSMASNAQNLQSGLVTLQNTQQNHPNFSQQRQQNLQ 515

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357482287|ref|XP_003611429.1| hypothetical protein MTR_5g013930 [Medicago truncatula] gi|355512764|gb|AES94387.1| hypothetical protein MTR_5g013930 [Medicago truncatula]

 Score =  658 bits (1698), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/532 (74%), Positives = 434/532 (81%), Gaps = 15/532 (2%)

Query: 29  ERLNQAVVQQLNLEAVKTRAISLFKAISRILEDFDAYARTNTTPKWQDILGQYSMVNLEL 88
           ERLNQAV QQLNLE VKTRAISLFKAISRILEDFDAY RTNT PKWQDILGQYSMVNLEL
Sbjct: 15  ERLNQAVQQQLNLEQVKTRAISLFKAISRILEDFDAYGRTNTNPKWQDILGQYSMVNLEL 74

Query: 89  FNIVDEIRKVSKAFVVHPKNVNAENATILPVMLSSKLLPEMEIDDNSKREQLLLGMQNLP 148
           FNIVD+I+KVSKAF+V+PKNVNAENATILPVMLS+KLLPEME +D  KR+QLL GMQNLP
Sbjct: 75  FNIVDDIKKVSKAFIVYPKNVNAENATILPVMLSTKLLPEMETEDTLKRDQLLQGMQNLP 134

Query: 149 IPSQIEKLKSRIDMIGAACESAEKVLADTRKAYCFGTRQGPQILPTLDKGQALKIQEQEN 208
           I +QI+KLK+RIDMI AACE AEKVLADTRKAYCFGTRQGP I PTLDKGQA KIQEQEN
Sbjct: 135 IATQIDKLKARIDMIAAACEGAEKVLADTRKAYCFGTRQGPAIAPTLDKGQAAKIQEQEN 194

Query: 209 LLRAAVNSGEGLRLPGDQRQMTPALPMHLVDLLPVGDGVHTFSDASG--MYMKNTPPLSS 266
           LLRAAVN GEGLR+PGDQR +T +LPMHL D   V +   +F D S   +YMKNT PLSS
Sbjct: 195 LLRAAVNVGEGLRIPGDQRHITASLPMHLADAFTVNESAQSFPDGSSNNVYMKNT-PLSS 253

Query: 267 NSIGNQGNLLQASGAQLIGRSAASPSAATSATSFDNTTASPVPYANSPRSGTNMMNTPSP 326
           NS+G Q +LLQ SG+QL+GRSAASPSAATSATSFDNTTASP+PYANSPRS TNMMNTPSP
Sbjct: 254 NSMGGQNSLLQTSGSQLLGRSAASPSAATSATSFDNTTASPIPYANSPRSTTNMMNTPSP 313

Query: 327 QQQQQQQQQQQQQQQQQRQKMMQLPHQQQLLAQQQFRQSQMQGLGQMSQLHDLQGQQKFQ 386
           QQQ  Q Q QQ   QQQ+Q+  +L  Q     QQQ    Q      M        QQ   
Sbjct: 314 QQQTPQPQPQQLTAQQQQQQRQKLMQQLPQQQQQQLLAQQQYRQSAM--------QQGLG 365

Query: 387 QLHGQHQMQFSQPMGHQQFQGRQLASGHVQHGIGQSQLGQGNQLNRHLSQFSGAANSALF 446
           QLHGQHQMQFS  +GHQQFQGRQL+S H+QH IGQSQL QGNQ+ R L+QFSG ANSALF
Sbjct: 366 QLHGQHQMQFSPQLGHQQFQGRQLSSAHMQHSIGQSQLNQGNQMTR-LNQFSGPANSALF 424

Query: 447 NAAQGTSNSQMIPNMSATVSSQSLLPRMQFGLAGNNPQRSHASQMLSDQMFNMGASNPGS 506
           +AAQ T N+QMIPN+SA ++SQSLLPRMQFGL+GNNPQRSH S MLSDQMFNMG  NPG 
Sbjct: 425 SAAQTTPNTQMIPNISAGITSQSLLPRMQFGLSGNNPQRSHPSHMLSDQMFNMGGGNPGG 484

Query: 507 MMPI---QQQQQQQQQQHNTQGAFGNMQPNAQNLQSNMVALQNAQQNHPNFA 555
           MM I   QQQQQQQQQQH++QGAFG M  NAQNLQS M+ LQNAQQNHPNF 
Sbjct: 485 MMSIQQQQQQQQQQQQQHSSQGAFGGMASNAQNLQSGMMTLQNAQQNHPNFT 536

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356550701|ref|XP_003543723.1| PREDICTED: uncharacterized protein LOC100809011 [Glycine max]

 Score =  624 bits (1608), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 386/546 (70%), Positives = 435/546 (79%), Gaps = 36/546 (6%)

Query: 31  LNQAVVQQLNLEAVKTRAISLFKAISRILEDFDAYARTNTTPKWQDILGQYSMVNLELFN 90
           LNQAV QQLNL+ VKTRAISLFKAISRILEDF+AY RTN+TPKWQDILGQYSMVNLELFN
Sbjct: 10  LNQAVQQQLNLKQVKTRAISLFKAISRILEDFEAYGRTNSTPKWQDILGQYSMVNLELFN 69

Query: 91  IVDEIRKVSKAFVVHPKNVNAENATILPVMLSSKLLPEMEIDDNSKREQLLLGMQNLPIP 150
           IVD+I+KVSKAF+VHPKNVNA+NATILPVMLSSKLLPEME DD +KR+QLLLGMQNLPIP
Sbjct: 70  IVDDIKKVSKAFLVHPKNVNADNATILPVMLSSKLLPEMETDDTAKRDQLLLGMQNLPIP 129

Query: 151 SQIEKLKSRIDMIGAACESAEKVLADTRKAYCFGTRQGP-QILP-TLDKGQALKIQEQEN 208
           +QIEKLK+R+D+I AACE AEKVLADTRKAYCFGTRQGP  I P TLDKGQA KIQEQEN
Sbjct: 130 TQIEKLKARLDLISAACEGAEKVLADTRKAYCFGTRQGPAAIAPATLDKGQAAKIQEQEN 189

Query: 209 LLRAAVNSGEGLRLPGDQRQMTPA-LPMHLVDLLPVGDGVHTFSDASGMYMKNTPPLSSN 267
           LLR+AVN+G+GLR+PGDQR +TPA  P+HL D LPV       +D +    +  P LS+N
Sbjct: 190 LLRSAVNAGDGLRIPGDQRHITPAQPPLHLADALPVVIA----NDPT--TAQPQPQLSAN 243

Query: 268 SIG--NQGNLLQASGA---QLIGR-SAASPSAATSATSFDNTTASPVPYANSPRSGTNMM 321
           ++G   Q +LLQAS A   QL+GR +A+  +A T+ TSFDN TASP+PYANSPRS TN+M
Sbjct: 244 TMGMPAQNSLLQASSATVSQLLGRSAASPSAATTTTTSFDNITASPIPYANSPRSSTNIM 303

Query: 322 NT----PSPQQQQQQQQQQQQQQQQQRQKMMQLPHQQQLLAQQQFRQSQMQGLGQMSQLH 377
           N+        QQQ    QQQQQ+Q+  Q   Q    Q L  QQQFRQS MQGLG      
Sbjct: 304 NSPSPQQQQTQQQPPVLQQQQQRQKFMQLPQQQQQHQILAQQQQFRQSAMQGLG------ 357

Query: 378 DLQGQQKFQQLHGQHQMQFSQPMGHQQFQGRQLASGHVQHGIGQSQLGQGNQLNRHLSQF 437
                    QLHGQHQMQFSQP+GHQQFQGRQL SGHVQHGIGQSQL QGNQ+ R LSQF
Sbjct: 358 ---------QLHGQHQMQFSQPLGHQQFQGRQLPSGHVQHGIGQSQLNQGNQMTR-LSQF 407

Query: 438 SGAANSALFNAAQGTSNSQMIPNMSATVSSQSLLPRMQFGLAGNNPQRSHASQMLSDQMF 497
           SG ANSALF+AAQ T N+QMIPN+S T+ SQSLLPR+Q GL+GNNPQRSH SQMLSDQ+F
Sbjct: 408 SGPANSALFSAAQTTPNTQMIPNISGTLPSQSLLPRVQLGLSGNNPQRSHPSQMLSDQVF 467

Query: 498 NMGASNPGSMMPIQQQQQQQQQQHNTQGAFGNMQPNAQNLQSNMVALQNAQQNHPNFAQQ 557
           NMG  NPG MMPIQQQQQQQQQQ +   AFG+M  NAQNLQS +V LQN QQNHPNF+QQ
Sbjct: 468 NMGGGNPGGMMPIQQQQQQQQQQQHGSQAFGSMA-NAQNLQSGLVTLQNTQQNHPNFSQQ 526

Query: 558 RQQNQQ 563
           RQQN Q
Sbjct: 527 RQQNPQ 532

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242045572|ref|XP_002460657.1| hypothetical protein SORBIDRAFT_02g032680 [Sorghum bicolor] gi|241924034|gb|EER97178.1| hypothetical protein SORBIDRAFT_02g032680 [Sorghum bicolor]

 Score =  566 bits (1460), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 321/532 (60%), Positives = 389/532 (73%), Gaps = 33/532 (6%)

Query: 28  VERLNQAVVQQLNLEAVKTRAISLFKAISRILEDFDAYARTN--TTPKWQDILGQYSMVN 85
           VERL+  V QQLNLE ++ RA+ L+KAISRILEDFD  ARTN   +PKWQD+LGQ+SMV+
Sbjct: 32  VERLSAGVQQQLNLEGMRARAVGLYKAISRILEDFDVIARTNPSASPKWQDVLGQFSMVS 91

Query: 86  LELFNIVDEIRKVSKAFVVHPKNVNAENATILPVMLSSKLLPEMEIDDNSKREQLLLGMQ 145
           +ELFNIV++I+ VSK FVV+P+NVNAENAT+LPVMLSSKLLPEME+D+ +KREQLL G+ 
Sbjct: 92  MELFNIVEDIKNVSKVFVVYPRNVNAENATVLPVMLSSKLLPEMEVDETTKREQLLSGIT 151

Query: 146 NLPIPSQIEKLKSRIDMIGAACESAEKVLADTRKAYCFGTRQGPQILPTLDKGQALKIQE 205
           NLP+P+QIEKLK+RI+MI +ACE+AEKV+A+ RK+Y  GTRQG  + PTLDK QA KIQE
Sbjct: 152 NLPVPTQIEKLKARIEMIASACETAEKVIAECRKSYGLGTRQGTNLGPTLDKAQAAKIQE 211

Query: 206 QENLLRAAVNSGEGLRLPGDQRQMTPALPMHLVDLLPVGDGVHTFSDASGMYMKNTPPLS 265
           QE LLRAAVN GEGLR+PGDQRQ   +LP HL+++LP+GDG   F D+SG Y KNT   +
Sbjct: 212 QEGLLRAAVNYGEGLRVPGDQRQ-PQSLPSHLIEVLPLGDGAQNFGDSSGSYPKNTSTFA 270

Query: 266 SNSIGNQGNLLQASGAQLIGRSAASPSAATSATSFDNTTASPVPYANSPRSGTNMMNTPS 325
            N++ NQGN  QASG QL+GR A SP   T   +F+N +  P+PYANSPRSGTNMMNTPS
Sbjct: 271 PNNVNNQGN--QASGGQLLGRPAPSP-GTTGTPNFENVSTPPMPYANSPRSGTNMMNTPS 327

Query: 326 PQQQQQQQQQQQQQQQQQRQKMMQLPHQQQLLAQQQFRQSQMQGLGQ--MSQLHDLQGQ- 382
           P        QQ    QQQRQK+MQ   QQQ L  QQ R S    L Q  + QL DLQGQ 
Sbjct: 328 P--------QQHLTPQQQRQKLMQA-SQQQQLHAQQLRPSAAGMLAQSALPQLQDLQGQA 378

Query: 383 QKFQQLHGQHQMQFSQPMGHQQFQGRQLASGHVQHGIGQSQLGQGNQLNRHLSQFSGAAN 442
           Q+  Q+ GQ QMQ++Q +  QQF  RQ+  G +Q G+ QSQL QG QL  HL QF+GAAN
Sbjct: 379 QQKLQVPGQQQMQYNQAL-SQQFHNRQMQPGRMQPGMAQSQLNQGTQLRSHLGQFTGAAN 437

Query: 443 SALFNAAQGTSNSQMIPNMSATVSSQSLLPRMQFGLAGNNPQRSHASQMLSDQMFNMGAS 502
           SA+FNAAQ +SNSQM+ NM     SQSL+P+MQ+G+AG +PQRSH  QML+DQMF MGA+
Sbjct: 438 SAMFNAAQASSNSQMMANMPG---SQSLMPQMQYGMAGGHPQRSHP-QMLTDQMFGMGAT 493

Query: 503 NPGSMMPIQQQQQQQQQQHNTQGAFGNMQPNAQNLQSNMVALQNAQQNHPNF 554
           N               QQ   QG +GNMQ  AQN+Q  MV LQN  QN PNF
Sbjct: 494 N---------SSMMGMQQQQQQGVYGNMQAGAQNMQQGMVGLQNQTQN-PNF 535

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297814606|ref|XP_002875186.1| hypothetical protein ARALYDRAFT_484217 [Arabidopsis lyrata subsp. lyrata] gi|297321024|gb|EFH51445.1| hypothetical protein ARALYDRAFT_484217 [Arabidopsis lyrata subsp. lyrata]

 Score =  561 bits (1447), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 341/533 (63%), Positives = 399/533 (74%), Gaps = 38/533 (7%)

Query: 27  AVERLNQAVVQQLNLEAVKTRAISLFKAISRILEDFDAYARTNTTPKWQDILGQYSMVNL 86
             E+LN  + ++LNLE++KTRA+SL KA+SRILEDFDAY RTNTTPKWQDILGQYSMVNL
Sbjct: 12  VAEKLNPKLEKELNLESLKTRAVSLVKAVSRILEDFDAYGRTNTTPKWQDILGQYSMVNL 71

Query: 87  ELFNIVDEIRKVSKAFVVHPKNVNAENATILPVMLSSKLLPEMEIDDNSKREQLLLGMQN 146
           ELFNIV+E++KVS AFVV PKNVNA NA ILPVMLSSKLLPEME DDN+KREQLL G+Q+
Sbjct: 72  ELFNIVEEVKKVSNAFVVLPKNVNAMNAGILPVMLSSKLLPEMETDDNAKREQLLQGVQS 131

Query: 147 LPIPSQIEKLKSRIDMIGAACESAEKVLADTRKAYCFGTRQGPQILPTLDKGQALKIQEQ 206
           LPIP QIE+LK+R+DMI AACE+AEKVLADTRKAY FGTRQGP +LPT+DKGQA KIQEQ
Sbjct: 132 LPIPMQIERLKARMDMIAAACENAEKVLADTRKAYGFGTRQGPSMLPTMDKGQAAKIQEQ 191

Query: 207 ENLLRAAVNSGEGLRLPGDQRQMTPALPMHLVDLLPVGDGVHTFSDASGMYMKNTPPLSS 266
           E++LRAAVN G G +LP DQRQ+T ALP HL D+L + D             K   P   
Sbjct: 192 ESMLRAAVNDGAGTKLPPDQRQITTALPPHLADVLIINDAG-----------KIALPGQL 240

Query: 267 NSIGNQGNLLQASGAQLIGRSAASPSAATSATSFDNTTASPVPYANSPRSGTNMMNTPSP 326
           N+I NQG ++Q SG Q +GRSAASPS      +FDNTT SP+PY+NSPR+ T M+N PSP
Sbjct: 241 NNINNQG-MMQVSGTQFMGRSAASPSGP----NFDNTT-SPLPYSNSPRA-TGMVNAPSP 293

Query: 327 QQQQQQQQQQQQQQQQQRQKMMQLPHQQQLLAQQQFRQSQMQGLG--QMSQLHDLQG--Q 382
           QQQ QQQ QQQQQ+ +  Q       Q     QQQ RQS MQGLG  Q+  LHD+ G  Q
Sbjct: 294 QQQIQQQLQQQQQRSKLMQLPQHQ-QQLLAQQQQQLRQSSMQGLGQSQIPALHDMHGQAQ 352

Query: 383 QKFQQLHGQHQMQFSQPM-GHQQFQGRQLASGHVQHGIGQSQLGQGNQLNRHLSQFSGAA 441
           QKFQ LHGQHQM +SQPM  HQQFQ RQL+ GH+QH + Q QL     +NRHL+QFSG A
Sbjct: 353 QKFQTLHGQHQMPYSQPMAAHQQFQARQLSGGHIQHSMSQGQLNPA--MNRHLNQFSGGA 410

Query: 442 NSALFNAAQGTSNSQMIPNMSATVSSQSLLPRM-QFGLAGNNPQRSHASQMLSDQMFNMG 500
           NSALF +AQG+ +SQMIPNMS ++ SQ+L+PRM QFG++G NPQRSH+SQML DQMFN  
Sbjct: 411 NSALFTSAQGSPSSQMIPNMS-SMQSQTLVPRMQQFGVSGTNPQRSHSSQMLGDQMFN-- 467

Query: 501 ASNPGSMMPIQQQQQQQQQQHNTQGAFGNMQPNAQNLQSNMVALQNAQQNHPN 553
                S M   QQ QQQQQQ   QG +GNMQ    NLQ N + +QNAQQ H N
Sbjct: 468 ----SSGMMQTQQPQQQQQQQQQQGGYGNMQ---TNLQPNNM-MQNAQQRHQN 512

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	563
TAIR|locus:2056770	524	MED8 "mediator subunit 8" [Ara	0.474	0.509	0.661	8.9e-128

TAIR|locus:2056770 MED8 "mediator subunit 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 900 (321.9 bits), Expect = 8.9e-128, Sum P(2) = 8.9e-128
 Identities = 188/284 (66%), Positives = 222/284 (78%)

Query:    22 PPQPVAVERLNQAVVQQLNLEAVKTRAISLFKAISRILEDFDAYARTNTTPKWQDILGQY 81
             PP PVA E+LN  + ++LNLE++KTRA+SL KAI+RILEDFDAY RTNTTPKWQDILGQY
Sbjct:     9 PPPPVA-EKLNPKLEKELNLESLKTRAVSLAKAIARILEDFDAYGRTNTTPKWQDILGQY 67

Query:    82 SMVNLELFNIVDEIRKVSKAFVVHPKNVNAENATILPVMLSSKLLPEMEIDDNSKREQLL 141
             SMVNLELFNIV+E+++VS AFVV PKNVNA NA ILPVMLSSKLLPEME DDN+KREQLL
Sbjct:    68 SMVNLELFNIVEEVKRVSNAFVVLPKNVNAMNAAILPVMLSSKLLPEMETDDNAKREQLL 127

Query:   142 LGMQNLPIPSQIEKLKSRIDMIGAACESAEKVLADTRKAYCFGTRQGPQILPTLDKGQAL 201
              G+Q+LPIP QIE+LK+R+DMI AACE+AE+VLADTRKAY FGTRQGP +LPT+DKGQA 
Sbjct:   128 QGVQSLPIPMQIERLKARMDMIAAACENAERVLADTRKAYGFGTRQGPSMLPTMDKGQAA 187

Query:   202 KIQEQENLLRAAVNSGEGLRLPGDQRQMTPALPMHLVDLLPVGDGVHTFSDASGMYMKNT 261
             KIQEQE +LR AVN G+G +LP DQRQ+T ALP HL D+L + D        +G   K  
Sbjct:   188 KIQEQEKMLRDAVNDGKGTQLPPDQRQITTALPPHLADVLIIND--------AG---KIA 236

Query:   262 PPLSSNSIGNQGNLLQASGAQLIGRXXXXXXXXXXXXXFDNTTA 305
              P  SN+I NQG ++Q SG Q +GR             FDNTT+
Sbjct:   237 LPGQSNNINNQG-MMQVSGTQFVGRSAASPSGPN----FDNTTS 275

GO:0005634 "nucleus" evidence=ISM

GO:0016592 "mediator complex" evidence=IDA

GO:0009909 "regulation of flower development" evidence=IMP

GO:0050832 "defense response to fungus" evidence=IMP

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0006310 "DNA recombination" evidence=RCA

GO:0006396 "RNA processing" evidence=RCA

GO:0007062 "sister chromatid cohesion" evidence=RCA

GO:0007126 "meiosis" evidence=RCA

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=RCA

GO:0009888 "tissue development" evidence=RCA

GO:0010332 "response to gamma radiation" evidence=RCA

GO:0010638 "positive regulation of organelle organization" evidence=RCA

GO:0031048 "chromatin silencing by small RNA" evidence=RCA

GO:0032204 "regulation of telomere maintenance" evidence=RCA

GO:0033044 "regulation of chromosome organization" evidence=RCA

GO:0042138 "meiotic DNA double-strand break formation" evidence=RCA

GO:0043247 "telomere maintenance in response to DNA damage" evidence=RCA

GO:0045132 "meiotic chromosome segregation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q4V3C1	MED8_ARATH	No assigned EC number	0.6348	0.8934	0.9599	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	563
pfam13779	820	pfam13779, DUF4175, Domain of unknown function (DU	3e-13
pfam09606	768	pfam09606, Med15, ARC105 or Med15 subunit of Media	3e-08
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	3e-08
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	9e-07
pfam13779	820	pfam13779, DUF4175, Domain of unknown function (DU	4e-04

>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175)

 Score = 72.2 bits (178), Expect = 3e-13
 Identities = 49/213 (23%), Positives = 73/213 (34%), Gaps = 19/213 (8%)

Query: 319 NMMNTPSPQQQQQQQQQQQQQQQQQRQKMMQLPHQQQLLAQQQFRQSQMQGLGQMSQLHD 378
            MM      Q  Q  Q + QQ  +   + ++   +QQ L+ + FR  Q Q   Q  +   
Sbjct: 568 QMMENLQVTQGGQGGQSEMQQAMEGLGETLR---EQQGLSDETFRDLQEQFNAQRGEQQG 624

Query: 379 LQGQQKFQQLHGQHQMQFSQPMGHQQFQGRQLASGHVQHGIGQSQLGQGNQLNRHLSQFS 438
            QGQ    Q     Q         Q  QG+    G  Q  + + Q    ++L R      
Sbjct: 625 QQGQGGQGQ-GQPGQQGQQGQGQQQGQQGQGGQGG--QGSLAERQQALRDELGRQRGGLP 681

Query: 439 GAANSALFNAAQGTSNSQMIPNMSATVSSQSLLPRMQFGLAGNNPQRSHASQMLSDQMFN 498
           G    A   A      +       A   ++  L +    LA    ++  A + L +    
Sbjct: 682 GMGGEAGEAARDALGRAG-----RAMGGAEEALGQGD--LAEAVDRQGRALEALREGARA 734

Query: 499 MGASNPGSMMPIQQQQQQQQQQHNTQGAFGNMQ 531
           +G     +M   QQQ QQQ  Q   QG  G   
Sbjct: 735 LG----EAMA--QQQGQQQGGQGQQQGRQGGNG 761

Length = 820

>gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal

 Score = 56.2 bits (135), Expect = 3e-08
 Identities = 62/328 (18%), Positives = 83/328 (25%), Gaps = 12/328 (3%)

Query: 234 PMHLVDLLPVGDGVHTFSDASGMYMKNTPPLSSNSIGNQGNLLQA---SGAQLIGRSAAS 290
           P++ +  L             G              G   NLLQ+    G   +G +   
Sbjct: 72  PINALQNLTGQGTRGPQMGPMGPGPGRPMGQQMGGPGTASNLLQSLNVRGQMPMGAAGMG 131

Query: 291 PSAATS-ATSFDNTTASPVPYANSPRSGTNMMNTPSPQQQQQQQQQQQQQQQQQRQKMMQ 349
           P   +   T      A  +   +S +  +   N   PQQ Q Q Q     Q QQ     Q
Sbjct: 132 PHQMSRVGTMQPGGQAGGMMQQSSGQPQSQQPNQMGPQQGQAQGQAGGMNQGQQGPVGQQ 191

Query: 350 LPHQQQLLAQQQFRQSQMQGLGQMSQLHDLQGQQKFQQLHGQHQMQFSQPMGHQQFQGRQ 409
            P Q                          Q  Q  QQL  Q Q Q  Q  G    Q + 
Sbjct: 192 QPPQMGQPGMPGGGGQGQMQQQGQPGGQQQQNPQMQQQLQNQQQQQMDQQQGPADAQAQM 251

Query: 410 LASGHVQHGIGQSQLGQGNQLNRHLSQFSGAANSALFNAAQGTSNSQMIPNMSATVSSQS 469
                 Q G+   Q+  G        Q                S   M+PN    +    
Sbjct: 252 GQQQQGQGGMQPQQMQGG--------QMQVPMQQQPPQQQPQQSQLGMLPNQMQQMPGGG 303

Query: 470 LLPRMQFGLAGNNPQRSHASQMLSDQMFNMGASNPGSMMPIQQQQQQQQQQHNTQGAFGN 529
                Q          +      + Q   M A          +  + QQQ    Q   G 
Sbjct: 304 QGGPGQPMGPPPQRPGAVPQGGQAVQQGVMSAGQQQLKQMKLRNMRGQQQTQQQQQQQGG 363

Query: 530 MQPNAQNLQSNMVALQNAQQNHPNFAQQ 557
             P A   Q N    Q  Q     +   
Sbjct: 364 NHPAAHQQQMNQQVGQGGQMVALGYLNI 391

The approx. 70 residue Med15 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, Med15 is a critical transducer of gene activation signals that control early metazoan development. Length = 768

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 56.3 bits (136), Expect = 3e-08
 Identities = 42/240 (17%), Positives = 61/240 (25%), Gaps = 31/240 (12%)

Query: 324 PSPQQQQQQQQQQQQQQQQQRQKMMQLPHQQQLLAQQQFRQSQMQGLGQMSQLHDLQGQQ 383
           P P+ Q  Q  + Q Q Q   QKM+ L   +++ AQ Q RQ                   
Sbjct: 130 PKPEPQPPQAPESQPQPQTPAQKMLSL---EEVEAQLQQRQQA-------------PQLP 173

Query: 384 KFQQLHGQHQMQFSQPMGHQQFQGRQLASGHVQHGIGQSQLGQGNQLNRHLSQFSGAANS 443
           +  Q      M   Q    QQ    +   G+ Q   G  +  Q  Q     SQ      +
Sbjct: 174 QPPQQVLPQGMPPRQAAFPQQGPP-EQPPGYPQPPQGHPEQVQPQQFLPAPSQ------A 226

Query: 444 ALFNAAQGTSNSQMIPNMSATVSSQSLLPRMQFGLAGNNPQRSHASQMLSDQMFNMGASN 503
                       Q  P            P +   +    PQ     Q            N
Sbjct: 227 PAQPPLPPQLPQQPPPLQQPQF------PGLSQQMPPPPPQPPQQQQQPPQPQAQPPPQN 280

Query: 504 PGSMMPIQQQQQQQQQQHNTQGAFGNMQPNAQNLQSNMVALQNAQQNHPNFAQQRQQNQQ 563
             +  P     Q Q            +    Q            Q    +  Q+   +Q+
Sbjct: 281 QPTPHP--GLPQGQNAPLPPPQQPQLLPLVQQPQGQQRGPQFREQLVQLSQQQREALSQE 338

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 51.7 bits (124), Expect = 9e-07
 Identities = 43/273 (15%), Positives = 68/273 (24%), Gaps = 20/273 (7%)

Query: 250 FSDASGMYMKNTPPLSSNSIGNQGNLLQASGAQLIGRSAASPSAATSATSFDNTTASPVP 309
               S     +    +S     Q     ++  + I      PS   +A   +        
Sbjct: 82  PGAPSVGPDSDLSQKTSTFSPCQSGYEASTDPEYIPDLQPDPSLWGTAPKPEPQPPQAPE 141

Query: 310 YANSPRSGTNMMNTPSPQQQQQQQQQQQQQQQQQRQKMMQLPHQQQLLAQQQFRQSQMQG 369
               P++    M +    + Q QQ+QQ  Q  Q  Q+++      +  A  Q    +   
Sbjct: 142 SQPQPQTPAQKMLSLEEVEAQLQQRQQAPQLPQPPQQVLPQGMPPRQAAFPQQGPPEQPP 201

Query: 370 LGQMSQLHDLQGQQKFQQLHGQHQMQFSQPMGHQQFQGRQLASGHVQHGIGQSQLGQGNQ 429
                     +  Q  Q L    Q     P+  Q  Q           G+ Q       Q
Sbjct: 202 GYPQPPQGHPEQVQPQQFLPAPSQAPAQPPLPPQLPQQPPPLQQPQFPGLSQQMPPPPPQ 261

Query: 430 LNRHLSQFSGAANSALFNAAQGTSNSQMIPNMSATVSSQSLLPRMQFGLAGNNPQRSHAS 489
             +                 Q     Q  P      +    LP+       N P      
Sbjct: 262 PPQQ---------------QQQPPQPQAQPPPQNQPTPHPGLPQ-----GQNAPLPPPQQ 301

Query: 490 QMLSDQMFNMGASNPGSMMPIQQQQQQQQQQHN 522
             L   +        G     Q  Q  QQQ+  
Sbjct: 302 PQLLPLVQQPQGQQRGPQFREQLVQLSQQQREA 334

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175)

 Score = 43.0 bits (102), Expect = 4e-04
 Identities = 19/73 (26%), Positives = 26/73 (35%), Gaps = 2/73 (2%)

Query: 311 ANSPRSGTNMMNTPSPQQQQQQQQQQQQQQQQQRQKMMQLPHQQQLLAQQQFRQSQMQGL 370
           A               Q Q  QQ QQ Q QQQ +Q       Q  L  +QQ  + ++   
Sbjct: 617 AQRGEQQGQQGQGGQGQGQPGQQGQQGQGQQQGQQGQGGQGGQGSLAERQQALRDELG-- 674

Query: 371 GQMSQLHDLQGQQ 383
            Q   L  + G+ 
Sbjct: 675 RQRGGLPGMGGEA 687

Length = 820

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	563
KOG3583	279	consensus Uncharacterized conserved protein [Funct	99.98
PF10232	226	Med8: Mediator of RNA polymerase II transcription	99.96

>KOG3583 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.98  E-value=2.1e-32  Score=265.01  Aligned_cols=174  Identities=21%  Similarity=0.256  Sum_probs=158.5

Q ss_pred             hhhcHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCChhhhhhhhhhcchhhhhhH----HHHhhhhcceEeeeccCCCC
Q 008513           37 QQLNLEAVKTRAISLFKAISRILEDFDAYARTNTTPKWQDILGQYSMVNLELFNIV----DEIRKVSKAFVVHPKNVNAE  112 (563)
Q Consensus        37 ~QlNLEAVraRA~DLkkaIsriI~~LE~e~~tN~t~kWpDVLdqFSVIS~QL~nLv----EEIkpvLr~FvVlPlnVnae  112 (563)
                      ....++-|..|++|+|+.|..+|.+||.+|   +++ ||.+|++|+.|+.++.+|.    +|-+|.||+.||+|..|.-|
T Consensus         8 ~~~~~d~~ikr~~d~k~~i~~llq~ldlq~---~~~-wp~~le~fs~las~ms~l~~~~~k~~~p~lr~~~~~~~~~~~e   83 (279)
T KOG3583|consen    8 IAQATDMMIKRVTDAKKIIEELLQMLDLQE---KCP-WPLMLEKFSTLASFMSSLQSSVRKSGMPHLRSHVLVTQRLQYE   83 (279)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---cCc-cHHHHHHHHHHHHHHHHHHHHHHHccCCccccchhhhhhhhcC
Confidence            345678999999999999999999999998   677 9999999999999998887    67778999999999999855


Q ss_pred             ----------------CCCcchhhhhcccCcchhhhhhHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHhHHHHHHH
Q 008513          113 ----------------NATILPVMLSSKLLPEMEIDDNSKREQLLLGMQNLPIPSQIEKLKSRIDMIGAACESAEKVLAD  176 (563)
Q Consensus       113 ----------------Na~IVPdmLRTKLlPEmEtee~q~~~ql~~kA~nLP~~~qiEklqKRId~iNkacE~aekvIa~  176 (563)
                                      ||++||||||||++||||.++-+    ++.+++++    ..|++.|+|..|||+|+++.+.|++
T Consensus        84 ~detl~r~TeGRVpvfsH~lVPdyLRTkPdPe~E~~e~q----l~~~aa~~----saDaa~kQI~~yNK~is~ll~~lsk  155 (279)
T KOG3583|consen   84 PDETLQRATEGRVPVFSHALVPDYLRTKPDPEMENEEGQ----LDGEAAAK----SADAAVKQIAAYNKNISGLLNHLSK  155 (279)
T ss_pred             chHHHHHHhcCcccccccccchHhhccCCChhhHHHHhh----hhhHHhhh----hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence                            99999999999999999999999    78899999    9999999999999999999999999


Q ss_pred             HHHhh-hhccCCCCCCCCccChhHHHHHHHHHHHHHHHHhcCCCcccCCCcCCCCCCCc
Q 008513          177 TRKAY-CFGTRQGPQILPTLDKGQALKIQEQENLLRAAVNSGEGLRLPGDQRQMTPALP  234 (563)
Q Consensus       177 aRk~~-e~gtRqGp~~~pT~dkadaaki~eqt~lL~AAVn~GeGLr~p~dqr~~~~~lp  234 (563)
                      .|++| |++.|.+  +.+|.+.+|       |++|||||.+|||||   .||.++.+=|
T Consensus       156 ~~re~tEs~~~~p--iqQT~n~~d-------T~~lVaaV~~GkGl~---~~r~~~~~gP  202 (279)
T KOG3583|consen  156 VDREHTESAIEKP--IQQTYNRDD-------TAKLVAAVLTGKGLR---SQRTMAPAGP  202 (279)
T ss_pred             HHHHHHHhhhcCc--cccccChhH-------HHHHHHHHHhccccc---cccccCCCCC
Confidence            99997 4488888  999999999       999999999999998   4666654433

>PF10232 Med8: Mediator of RNA polymerase II transcription complex subunit 8; InterPro: IPR019364 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes

Probab=99.96  E-value=1.7e-31  Score=255.03  Aligned_cols=170  Identities=20%  Similarity=0.293  Sum_probs=108.4

Q ss_pred             hcHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCChhhhhhhhhhcchhhhhhHHHHh---hhhcceEeeeccCCCC--C
Q 008513           39 LNLEAVKTRAISLFKAISRILEDFDAYARTNTTPKWQDILGQYSMVNLELFNIVDEIR---KVSKAFVVHPKNVNAE--N  113 (563)
Q Consensus        39 lNLEAVraRA~DLkkaIsriI~~LE~e~~tN~t~kWpDVLdqFSVIS~QL~nLvEEIk---pvLr~FvVlPlnVnae--N  113 (563)
                      .+||+||.|+.+|+++|..|+.+|+..+   +.+.|++||++|+||+++|.+|.+.++   ++|+++||||+.+.|+  .
T Consensus        11 ~aLe~ir~Rl~qL~~SL~~l~~~L~~~~---~lp~W~slq~qf~il~~qL~sL~~~L~~~~~~L~~~vv~P~~~fP~~~~   87 (226)
T PF10232_consen   11 KALEAIRQRLAQLKHSLQSLIDKLEQSQ---PLPPWPSLQDQFAILSSQLSSLSKTLQHNKPLLRNTVVYPLPLFPGRDE   87 (226)
T ss_dssp             TTTSTTTHHHHHHHHHHHHHHHHHT-T----SS---HHHHHHHHHHHHHHHHHHHHTTTSSTTTTTS--TTS---S--TT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHccC---CCCCcHHHHHHHHHHHHHHHHHHHHHHhccccccceeeecCCCCCCcCh
Confidence            6899999999999999999999999877   899999999999999999999995554   8999999999999876  6


Q ss_pred             CCcchhhhhcccCcchhhhhhHHHHHHHhhcCCCCCchhHHHHHHH-----HHHHHHHHHhHHHHHHHHHHhhhh--ccC
Q 008513          114 ATILPVMLSSKLLPEMEIDDNSKREQLLLGMQNLPIPSQIEKLKSR-----IDMIGAACESAEKVLADTRKAYCF--GTR  186 (563)
Q Consensus       114 a~IVPdmLRTKLlPEmEtee~q~~~ql~~kA~nLP~~~qiEklqKR-----Id~iNkacE~aekvIa~aRk~~e~--gtR  186 (563)
                      .++||+||||||+||||..+.+.    ...+.++    ..+...++     |..+|+.|++++++|.+.|++|+.  ..+
T Consensus        88 e~ll~~lLRtKl~PeVE~~~~~~----~~~~~~~----~~~~~~~q~~~~~i~~~~k~~~~~~~~~t~lree~e~~~~~~  159 (226)
T PF10232_consen   88 EDLLPDLLRTKLDPEVEEWEAQL----REEAANA----TPDAAQKQQAELAIAQYNKRISNWLDVVTGLREEWEFEDFSD  159 (226)
T ss_dssp             GGGTTHHHHH----GGGTTTSTT----T---TTS-----S--SSS-SSTTTHHHHHHHHHHH--TTTTTHHH---HTTT-
T ss_pred             HHHHHHHHhCCCCChHHHHHHHH----HHHHHhc----CcCHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence            68999999999999999999994    4445555    55666777     999999999999999999999998  555


Q ss_pred             CCCCCCCccChhHHHHHHHHHHHHHHHHhcCCCcccCCCcCC
Q 008513          187 QGPQILPTLDKGQALKIQEQENLLRAAVNSGEGLRLPGDQRQ  228 (563)
Q Consensus       187 qGp~~~pT~dkadaaki~eqt~lL~AAVn~GeGLr~p~dqr~  228 (563)
                      .+  ..+|++.+|       ++.|++||.+|+||+-..++..
T Consensus       160 ~~--~~~~~~~~d-------t~~lv~~~~~g~gl~~~~~~~~  192 (226)
T PF10232_consen  160 RE--EEQTSEEED-------TEALVAAVGFGKGLKPQFEQQI  192 (226)
T ss_dssp             --------------------HHHHHH------SS-HH-----
T ss_pred             cc--cccccChhH-------HHHHHHHhhcchhcccccchhh
Confidence            55  889999999       9999999999999995555443

Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Arc32, or Med8, is one of the subunits of the Mediator complex of RNA polymerase II. The region conserved contains two alpha helices putatively necessary for binding to other subunits within the core of the Mediator complex. The N terminus of Med8 binds to the essential core Head part of Mediator and the C terminus hinges to Med18 on the non-essential part of the Head that also includes Med20 []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 3C0T_B 3RJ1_J 2HZS_I.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	563
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-07
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	8e-06
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	3e-05
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	3e-04
3lj5_A	725	Portal protein, protein GP1; DNA ejection, molecul	4e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 53.3 bits (127), Expect = 2e-07
 Identities = 43/275 (15%), Positives = 92/275 (33%), Gaps = 65/275 (23%)

Query: 11  QQQQQQQQQLVPPQPVAVERLNQAVVQQLNLEAVKTRAISLFKA--------I------S 56
           +  Q+   Q+ P       R + +   +L + +++     L K+        +      +
Sbjct: 200 EMLQKLLYQIDPNW---TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA 256

Query: 57  RILEDFDAYART-NTTPKWQ--DILG--QYSMVNLELFNIV---DEIRKV-SKAFVVHPK 107
           +    F+   +   TT   Q  D L     + ++L+  ++    DE++ +  K     P+
Sbjct: 257 KAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ 316

Query: 108 NVNAENATILPVMLSSKLLPEMEIDDNSKREQLLLGMQNLPIPSQIEKLKSRIDMIGAAC 167
           ++  E  T  P  LS  ++ E   D  +  +               +KL + I+      
Sbjct: 317 DLPREVLTTNPRRLS--IIAESIRDGLATWDNWKH--------VNCDKLTTIIESSLNVL 366

Query: 168 ESAEKVLADTRKAY----CFGTRQGPQILPTLDKGQALKI-------QEQENLLRAAVNS 216
           E AE      RK +     F       I PT      L +        +   ++      
Sbjct: 367 EPAE-----YRKMFDRLSVF--PPSAHI-PT----ILLSLIWFDVIKSDVMVVVNKLHKY 414

Query: 217 GEGLRLPGDQRQMTPALPMHLVDLLPVGDG---VH 248
              L +    ++ T ++P   ++L    +    +H
Sbjct: 415 --SL-VEKQPKESTISIPSIYLELKVKLENEYALH 446

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.2 bits (124), Expect = 4e-07
 Identities = 44/293 (15%), Positives = 82/293 (27%), Gaps = 91/293 (31%)

Query: 36  VQQLNLEAVKT--RAISLFKAISRILEDFDAYARTNTTPKWQDILGQYSMVNLELFNIV- 92
            Q L  E + T  R +S+     R     D  A       W      +  VN +    + 
Sbjct: 315 PQDLPREVLTTNPRRLSIIAESIR-----DGLAT------WD----NWKHVNCDKLTTII 359

Query: 93  ---------DEIRKVSKAFVVHPKNVNAENATILPVMLSSKLLPEMEIDD-----NSKRE 138
                     E RK+     V P + +      +P +L S +  ++   D     N   +
Sbjct: 360 ESSLNVLEPAEYRKMFDRLSVFPPSAH------IPTILLSLIWFDVIKSDVMVVVNKLHK 413

Query: 139 QLLLGMQNLP----IPSQIEKLKSRIDMIGAACESAEKVLAD---TRKAYCFGTRQGPQI 191
             L+  Q       IPS   +LK +++   A      + + D     K +         I
Sbjct: 414 YSLVEKQPKESTISIPSIYLELKVKLENEYA----LHRSIVDHYNIPKTFDSDDL----I 465

Query: 192 LPTLDK-------------GQALKIQEQENL------LRAAV-NSGEGLRLPGDQRQMTP 231
            P LD+                 ++     +      L   + +        G       
Sbjct: 466 PPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGS------ 519

Query: 232 ALPMHLVDLLPVGDGVHTFSDASGMYMKNTPPLSSNSIGNQGNLLQASGAQLI 284
                +++ L     +  +      Y+ +  P     +    + L      LI
Sbjct: 520 -----ILNTL--QQ-LKFYKP----YICDNDPKYERLVNAILDFLPKIEENLI 560

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 47.9 bits (113), Expect = 8e-06
 Identities = 26/147 (17%), Positives = 35/147 (23%)

Query: 253 ASGMYMKNTPPLSSNSIGNQGNLLQASGAQLIGRSAASPSAATSATSFDNTTASPVPYAN 312
           A   Y +N  PL   +         A+G            A  S       T +      
Sbjct: 12  AQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQ 71

Query: 313 SPRSGTNMMNTPSPQQQQQQQQQQQQQQQQQRQKMMQLPHQQQLLAQQQFRQSQMQGLGQ 372
                T  MN                Q Q   Q    L  QQQ +A   + Q        
Sbjct: 72  QIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQN 131

Query: 373 MSQLHDLQGQQKFQQLHGQHQMQFSQP 399
           M  ++ L       +L          P
Sbjct: 132 MRPMNQLYPIDLLTELPPPITDLTLPP 158

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 46.0 bits (108), Expect = 3e-05
 Identities = 24/203 (11%), Positives = 47/203 (23%), Gaps = 5/203 (2%)

Query: 277 QASGAQLIGRSAASPSAATSATSFDNTTASPVPYANSPRSGTNMMNTPSPQQQQQQQQQQ 336
           +      +     +      A        +    +            PS  QQQ     Q
Sbjct: 7   RVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQ 66

Query: 337 QQQQQQQRQKMMQLPHQQQLLAQQQFRQSQMQGLGQMSQLHDLQGQQKFQQLHGQHQMQF 396
           +Q  QQ  Q    +              + MQ    +       G    QQ        +
Sbjct: 67  EQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQ-----MGTPLQQQQQPMAAPAY 121

Query: 397 SQPMGHQQFQGRQLASGHVQHGIGQSQLGQGNQLNRHLSQFSGAANSALFNAAQGTSNSQ 456
            QP        R +   +    + +      +                + +     S   
Sbjct: 122 GQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERMLVPSELSNASPDY 181

Query: 457 MIPNMSATVSSQSLLPRMQFGLA 479
           +   ++A   + SLL + +    
Sbjct: 182 IRSTLNAVPKNSSLLKKSKLPFG 204

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 42.9 bits (100), Expect = 3e-04
 Identities = 25/174 (14%), Positives = 36/174 (20%)

Query: 324 PSPQQQQQQQQQQQQQQQQQRQKMMQLPHQQQLLAQQQFRQSQMQGLGQMSQLHDLQGQQ 383
           P  Q Q  Q     QQ  Q                     Q  +  +GQ   L   Q Q 
Sbjct: 10  PQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQL 69

Query: 384 KFQQLHGQHQMQFSQPMGHQQFQGRQLASGHVQHGIGQSQLGQGNQLNRHLSQFSGAANS 443
             Q       M                    V   +G     Q   +         AA  
Sbjct: 70  HQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMG 129

Query: 444 ALFNAAQGTSNSQMIPNMSATVSSQSLLPRMQFGLAGNNPQRSHASQMLSDQMF 497
                        ++  +   ++  +L P             S  S    D + 
Sbjct: 130 QNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERMLVPSELSNASPDYIR 183

>3lj5_A Portal protein, protein GP1; DNA ejection, molecular motor, DNA packaging podoviridae, virus assembly, tail tube, trunk domain; 7.50A {Enterobacteria phage P22} Length = 725

 Score = 42.4 bits (98), Expect = 4e-04
 Identities = 20/120 (16%), Positives = 43/120 (35%)

Query: 310 YANSPRSGTNMMNTPSPQQQQQQQQQQQQQQQQQRQKMMQLPHQQQLLAQQQFRQSQMQG 369
             +        M    P+  ++QQ   + QQ +Q Q+   +   Q +L Q Q   ++ Q 
Sbjct: 568 MRDYANKQLIQMGVKKPETPEEQQWLVEAQQAKQGQQDPAMVQAQGVLLQGQAELAKAQN 627

Query: 370 LGQMSQLHDLQGQQKFQQLHGQHQMQFSQPMGHQQFQGRQLASGHVQHGIGQSQLGQGNQ 429
                Q+   + + + Q    +    F+     +Q + R+           +S+  + N 
Sbjct: 628 QTLSLQIDAAKVEAQNQLNAARIAEIFNNMDLSKQSEFREFLKTVASFQQDRSEDARANA 687

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	563
4h63_H	200	Mediator of RNA polymerase II transcription subun;	99.88
4gwp_C	407	Mediator of RNA polymerase II transcription subun;	99.57

>4h63_H Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; 3.40A {Schizosaccharomyces pombe}

Probab=99.88  E-value=7.2e-23  Score=192.73  Aligned_cols=165  Identities=13%  Similarity=0.187  Sum_probs=122.6

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCChhhhhhhhhhcchhhhhhHHHH---hhhhcceEeeeccCCCC--CC
Q 008513           40 NLEAVKTRAISLFKAISRILEDFDAYARTNTTPKWQDILGQYSMVNLELFNIVDEI---RKVSKAFVVHPKNVNAE--NA  114 (563)
Q Consensus        40 NLEAVraRA~DLkkaIsriI~~LE~e~~tN~t~kWpDVLdqFSVIS~QL~nLvEEI---kpvLr~FvVlPlnVnae--Na  114 (563)
                      .||+||.|+++|+++|.+|+.+|+..+   +.++|++||++|+||+++|.+|++.+   .++|+++||||+.+.|+  ..
T Consensus        12 ~LEs~R~Rl~qL~~Sl~~l~~~l~~~~---~lp~W~sll~q~~vl~~qL~sl~~~L~~~~~~l~~~~v~P~~~~P~~~~e   88 (200)
T 4h63_H           12 SLEAIRHRIAQIVQSLTHFLAILHQSE---SLSPWPTIHKNFNILLSQIHSLSNNLAAHSHTLQTTSIYPSLEFPVKEQE   88 (200)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHS---SCCCHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHTEEEEECTTSCTTTCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccC---CCCCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHhcceeccCCCCCCcchh
Confidence            599999999999999999999999876   89999999999999999999999777   68999999999999877  45


Q ss_pred             CcchhhhhcccCcchhhhhhHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhccCCCCCCCCc
Q 008513          115 TILPVMLSSKLLPEMEIDDNSKREQLLLGMQNLPIPSQIEKLKSRIDMIGAACESAEKVLADTRKAYCFGTRQGPQILPT  194 (563)
Q Consensus       115 ~IVPdmLRTKLlPEmEtee~q~~~ql~~kA~nLP~~~qiEklqKRId~iNkacE~aekvIa~aRk~~e~gtRqGp~~~pT  194 (563)
                      .+|+.+||||++||||.-....++.......+.+.....+++.+..+....+|..+.+ ..+.|+-|+++++..-...+.
T Consensus        89 ~~L~~LLR~K~~PeVe~wv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~~~~~w~g~~t~eE~~~g~~  167 (200)
T 4h63_H           89 PLLTTLLRTKALPEVEEWEANTLQEYEASISSQPKKKEANDAYQKDQLWDQARIIFME-ERENYSWFDFVTRRQESEGEF  167 (200)
T ss_dssp             HHHHHHTCCCCCHHHHHHHHHHHHHHHHHC--------CTTHHHHHHHHHHHHHHHHH-HGGGSCCC-------------
T ss_pred             hHHHHHhcCCCCchHHHHHHHHHHhcccccccccchhhHHHHHhhHHHHHHHHHHHHH-HHHhhhhccchhHHHhhcCcc
Confidence            5799999999999999999998888888877777777888888888888888888876 555566666688888777777


Q ss_pred             cChhHHHHHHHHHH
Q 008513          195 LDKGQALKIQEQEN  208 (563)
Q Consensus       195 ~dkadaaki~eqt~  208 (563)
                      .+.....+..+.+.
T Consensus       168 ~~~~~~~~~~~~e~  181 (200)
T 4h63_H          168 VSQRQLEIDRATEE  181 (200)
T ss_dssp             ---CCHHHHHHHHH
T ss_pred             ccchhhhhhccccc
Confidence            77766666654443

>4gwp_C Mediator of RNA polymerase II transcription subun; binding sites, mediator complex, models, molecular, phosphor protein structure; 4.20A {Saccharomyces cerevisiae} PDB: 4gwq_C 3rj1_C 1edi_A 1edj_A 1edk_A 1edl_A

Probab=99.57  E-value=2.9e-15  Score=152.96  Aligned_cols=141  Identities=16%  Similarity=0.232  Sum_probs=106.0

Q ss_pred             hcHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCChhhhhhhhhhcchhhhhhHHHH---hhhhcceEeeeccCCCC--C
Q 008513           39 LNLEAVKTRAISLFKAISRILEDFDAYARTNTTPKWQDILGQYSMVNLELFNIVDEI---RKVSKAFVVHPKNVNAE--N  113 (563)
Q Consensus        39 lNLEAVraRA~DLkkaIsriI~~LE~e~~tN~t~kWpDVLdqFSVIS~QL~nLvEEI---kpvLr~FvVlPlnVnae--N  113 (563)
                      -.||+||.|+..|.++|.+|+..|...    +.+.|++|+++|.||+.+|.+|.+.+   .++|+++||||+...|.  .
T Consensus        31 ~aLEslR~RL~QLt~SL~sL~~~L~~s----pLP~W~SLqsQfnILlsQL~SLs~~L~~n~~lL~~~vVyP~p~FP~rtq  106 (407)
T 4gwp_C           31 QALDAVRMRLAQLTHSLRRIRDEMSKA----ELPQWYTLQSQLNVTLSQLVSVTSTLQHFQETLDSTVVYPLPKFPTTSH  106 (407)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHCT----TSCCCHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHCCCCCCCGGGTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcC----CCCCcHHHHHHHHHHHHHHHHHHHHHHhcchHhhhceeccCCCCCCcch
Confidence            369999999999999999999999653    69999999999999999999999888   88999999999998765  6


Q ss_pred             CCcchhhhhcccCcchhhhhhHHHHHHHhhcCCCCCc-hhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhccCCC
Q 008513          114 ATILPVMLSSKLLPEMEIDDNSKREQLLLGMQNLPIP-SQIEKLKSRIDMIGAACESAEKVLADTRKAYCFGTRQG  188 (563)
Q Consensus       114 a~IVPdmLRTKLlPEmEtee~q~~~ql~~kA~nLP~~-~qiEklqKRId~iNkacE~aekvIa~aRk~~e~gtRqG  188 (563)
                      ..+|+.+||||++||||.-....|   +.  ..++.. ...+.+.+-++......+-|...+++.|+.|+++++-.
T Consensus       107 E~LLttLLRKKl~PEVEeWi~~gr---e~--~~~~~~~~~d~e~e~~lq~d~El~~WA~~~l~~E~eky~wk~~~t  177 (407)
T 4gwp_C          107 ESLVTTLLRKKNIPEVDEWMKYVR---ET--SGVTTALLKDEEIEKLLQQDREITNWARTTFRNEYGKHDFKNEES  177 (407)
T ss_dssp             TTTHHHHHTCCCCCTTHHHHHHHH---TT--SSCSSSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC----
T ss_pred             hhHHHHHhccCCCchHHHHHHHHH---hc--CCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccch
Confidence            679999999999999987766532   22  222211 12333333344444455555666777777787766654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00