BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008514
(563 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6CGU8|MCH1_YARLI Probable transporter MCH1 OS=Yarrowia lipolytica (strain CLIB 122 /
E 150) GN=MCH1 PE=3 SV=1
Length = 486
Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 83/195 (42%), Gaps = 19/195 (9%)
Query: 321 RIAQLQARLFHAAAEGAVRVKRRRGPHRGEDFTLTQALIKADFWLIFFSLLLGSGSGLTV 380
R A+ A AE + H G TL + WL + G
Sbjct: 234 RTAESMASELRKKAEASTDCNCDGPGHEGA--TLKEFFTDKTAWLFLLCFVFIGGPFEMF 291
Query: 381 IDNLGQMSQSLGYDN-------THIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAM 433
+N+G + ++ +N TH VS+ + ++ + R+ G+ SE + + RPV +
Sbjct: 292 QNNMGAILDTVTVENADSPSFSTH--VSLFATFSTVSRLVVGFSSEAM--ESHVSRPVLL 347
Query: 434 AVAQFVMAIGHIFLGMG----WPGAMY--VGTLLIGLGYGAHWAIVPAAASELFGLKKFG 487
+V V A H+ + G + A Y V T++ G YG+ + +VP ++++G+ G
Sbjct: 348 SVIALVAACIHLMVPSGIFTVFDNAKYFSVVTIVNGFSYGSSFTLVPTIVTKVWGIANLG 407
Query: 488 ALYNFLTLANPAGSI 502
++ LA GS+
Sbjct: 408 TIWGSFILALAVGSL 422
>sp|P37662|YHJX_ECOLI Inner membrane protein YhjX OS=Escherichia coli (strain K12)
GN=yhjX PE=1 SV=1
Length = 402
Score = 43.5 bits (101), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 74/166 (44%), Gaps = 15/166 (9%)
Query: 350 EDFTLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDN---THIFVSMISIW 406
+D+TL +++ K +W++ L SGL VI ++QSL + + V++ISI
Sbjct: 203 KDYTLAESMRKPQYWMLAVMFLTACMSGLYVIGVAKDIAQSLAHLDVVSAANAVTVISIA 262
Query: 407 NFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMGWPGAM--YVGTLLIGL 464
N GR+ G S+ I R + + Q + +G L A+ + +
Sbjct: 263 NLSGRLVLGILSDKIARIR------VITIGQVISLVGMAALLFAPLNAVTFFAAIACVAF 316
Query: 465 GYGAHWAIVPAAASELFGL----KKFGALYNFLTLANPAGSIFTSM 506
+G + P+ SE FGL K +G +Y + + GSI S+
Sbjct: 317 NFGGTITVFPSLVSEFFGLNNLAKNYGVIYLGFGIGSICGSIIASL 362
>sp|Q4WVT3|MCH1_ASPFU Probable transporter mch1 OS=Neosartorya fumigata (strain ATCC
MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=mch1 PE=3
SV=1
Length = 619
Score = 38.5 bits (88), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 32/50 (64%)
Query: 452 PGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGS 501
PG +V T LIGLGYG+ +++VP S ++G++ FG + + + AG+
Sbjct: 506 PGLSHVTTALIGLGYGSAFSLVPIIISVVWGVENFGTNWGIVAMVPAAGA 555
>sp|Q5AXV1|MCH1_EMENI Probable transporter mch1 OS=Emericella nidulans (strain FGSC A4 /
ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=mch1 PE=3
SV=2
Length = 615
Score = 37.7 bits (86), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 78/180 (43%), Gaps = 36/180 (20%)
Query: 358 LIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHI-----------FVSMISIW 406
L W + L +G G ++NLG + Q+L D T I V++I++
Sbjct: 373 LADHTMWWLALGFFLVTGPGEAYLNNLGTIVQTLNLDTTAIVDSHPAGLPSTHVTIIALT 432
Query: 407 NFLGRVGGGYFSEI----------IVRDYAYPRPV-----AMAVAQFVMAIGHIF----- 446
+ + R+ G S++ + ++ A P P A++ F++ +
Sbjct: 433 STIARLLTGSLSDLFAPTARRHFTVDQETAGPDPFTKQRPALSRLAFLIPSALLLSLGFL 492
Query: 447 -----LGMGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGS 501
L P ++ T L+GLGYG+ +++VP S ++G++ FG + + + AG+
Sbjct: 493 LLASPLPTHHPELSHLTTALVGLGYGSIFSLVPIIISVVWGVENFGTNWGIVAMFPAAGA 552
>sp|Q6CDN5|DBP6_YARLI ATP-dependent RNA helicase DBP6 OS=Yarrowia lipolytica (strain CLIB
122 / E 150) GN=DBP6 PE=3 SV=1
Length = 607
Score = 36.6 bits (83), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 301 EVEDEKPKDVDLLPASERRKRIAQLQARLFHAAAEGAVRVKRRRGPHRGEDFTLTQ 356
EV+DE+ + + L A ++RK+ Q A L A E A+ KR+R H GE+ + ++
Sbjct: 65 EVKDEEESEDENLTADQKRKK-KQEAANLAKRAEEKALERKRKREQHMGEEDSDSE 119
>sp|Q03795|YM30_YEAST Uncharacterized membrane protein YMR155W OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=YMR155W PE=1
SV=1
Length = 547
Score = 35.8 bits (81), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 57/271 (21%), Positives = 107/271 (39%), Gaps = 45/271 (16%)
Query: 292 QETDEVILSEVEDEKPKDVDLL-PASERRKRIAQLQARLFHAAAEGAVRVKRRRGPHRGE 350
QET E +ED + + LL P+S K + + + E + + R
Sbjct: 257 QETSEFF--ALEDRQLSNRPLLSPSSPHTKYDFEDENTSKNTVGENSAQKSMR------- 307
Query: 351 DFTLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSL------------GYDNTHI 398
+ Q+L + F + L + G GL I ++G M Q+ +
Sbjct: 308 -LHVFQSLKSSTFIGYYIVLGILQGVGLMYIYSVGFMVQAQVSTPPLNQLPINAEKIQSL 366
Query: 399 FVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVM-----AIGHIFLGMGWPG 453
V+++S+ +F GR+ G S+ +V+ + R + +A ++ I H F + P
Sbjct: 367 QVTLLSLLSFCGRLSSGPISDFLVKKFKAQRLWNIVIASLLVFLASNKISHDFSSIEDPS 426
Query: 454 --------AMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANP-AGSIFT 504
+ V + + G +G + P+ ++ FG + L+ LT + S+FT
Sbjct: 427 LRASKSFKNISVCSAIFGYSFGVLFGTFPSIVADRFGTNGYSTLWGVLTTGGVFSVSVFT 486
Query: 505 SM-------PRVDEPLKCE-GSICYFLTSMI 527
+ D+ C+ G +CY T M+
Sbjct: 487 DILGRDFKANTGDDDGNCKKGVLCYSYTFMV 517
>sp|Q96TW9|MCH1_HANAN Probable transporter MCH1 OS=Hansenula anomala GN=MCH1 PE=3 SV=1
Length = 489
Score = 34.7 bits (78), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 65/142 (45%), Gaps = 5/142 (3%)
Query: 364 WLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHIF--VSMISIWNFLGRVGGGYFSEII 421
+++ FSLLL G I N+G + +++ N+ I V++ ++++ L R+ G S+ +
Sbjct: 265 YVLLFSLLLSIGPSEMYITNMGSLVKAIT-PNSLISDQVAIHAVFSTLSRLSLGALSDFL 323
Query: 422 VRDYAYPRPVAMAVAQFVMAIGHIFLGMGW--PGAMYVGTLLIGLGYGAHWAIVPAAASE 479
V +Y R + + IF+ Y+ + L G YG + + P
Sbjct: 324 VTNYQISRSWLLLSIIVLGFFTQIFIATSTFVKDQYYIISALSGFSYGGLFTLYPTVIFS 383
Query: 480 LFGLKKFGALYNFLTLANPAGS 501
++G + FG+ + +A GS
Sbjct: 384 IWGPEIFGSAWGSFMIAPAIGS 405
Score = 32.3 bits (72), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 60/143 (41%), Gaps = 14/143 (9%)
Query: 28 CAGIGYLFGSISPVIKSSLNYNQKQIARLGVAKDLG-----DSVGFLAGSLCEVLPIWGA 82
CAG LF +PV++ L+Y Q QI +G +G +G+LA C G
Sbjct: 41 CAGSVLLFALFTPVLQHQLHYTQFQINIIGSFTSIGMYLPLPVLGYLAD--CH-----GP 93
Query: 83 LLVGALQN-FIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFPK 141
+L+ + F G+ L T W + I + + AL++C + +PK
Sbjct: 94 VLLSVISVLFFSPGYT-LAATVVQNDWSFWYLAISFGLIGCATSALYFTALLTCAKIYPK 152
Query: 142 SRGPVVGILKGFAGLGGAILTQV 164
S+G + GL I ++V
Sbjct: 153 SKGLTISAPVTCYGLSSLIGSRV 175
>sp|G2TRT7|YCYH_SCHPO Putative uncharacterized transmembrane protein C1235.17
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPCC1235.17 PE=4 SV=1
Length = 150
Score = 32.7 bits (73), Expect = 7.4, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 200 GHRQVRPSDSSSFTFIYSVCLLLAAYL-MGVMLVEDLVDLNHTVIIIFTVILFVLLFIPI 258
G + +D SS+ + SV L L Y+ +G M++ + H + + T+ + + + I
Sbjct: 35 GQNKEGNADKSSYFKVVSVILTLRGYVQLGYMVIHLVTHTLHCITLYITITHYTIYIVNI 94
Query: 259 VIPIILSFFLER 270
VI + L ++ER
Sbjct: 95 VIQLWLYRYIER 106
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.327 0.142 0.437
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 207,090,631
Number of Sequences: 539616
Number of extensions: 8871744
Number of successful extensions: 29131
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 29095
Number of HSP's gapped (non-prelim): 64
length of query: 563
length of database: 191,569,459
effective HSP length: 123
effective length of query: 440
effective length of database: 125,196,691
effective search space: 55086544040
effective search space used: 55086544040
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 64 (29.3 bits)