Query 008514
Match_columns 563
No_of_seqs 149 out of 715
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 05:20:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008514.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008514hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pw4_A Glycerol-3-phosphate tr 99.8 2E-20 6.9E-25 198.1 18.2 401 11-548 22-439 (451)
2 3o7q_A L-fucose-proton symport 99.8 7.3E-20 2.5E-24 193.3 21.2 389 12-533 21-423 (438)
3 4aps_A DI-OR tripeptide H+ sym 99.7 2E-14 6.8E-19 154.5 26.7 416 37-549 35-478 (491)
4 2gfp_A EMRD, multidrug resista 99.6 1.6E-15 5.4E-20 157.2 12.6 319 32-506 16-344 (375)
5 2cfq_A Lactose permease; trans 99.5 1.3E-14 4.3E-19 154.0 10.0 175 354-543 213-400 (417)
6 4gc0_A D-xylose-proton symport 99.4 1.5E-11 5E-16 131.9 21.5 129 33-161 26-178 (491)
7 2xut_A Proton/peptide symporte 99.3 1.8E-11 6.3E-16 132.5 18.8 142 12-161 11-164 (524)
8 4aps_A DI-OR tripeptide H+ sym 98.5 4.3E-07 1.5E-11 97.0 12.5 171 361-545 13-199 (491)
9 1pw4_A Glycerol-3-phosphate tr 98.4 4.9E-07 1.7E-11 94.9 9.6 172 359-544 26-208 (451)
10 2gfp_A EMRD, multidrug resista 98.3 4.8E-07 1.6E-11 93.1 6.9 160 365-538 4-170 (375)
11 3o7q_A L-fucose-proton symport 98.3 5.4E-06 1.8E-10 86.7 13.3 116 384-505 49-174 (438)
12 2xut_A Proton/peptide symporte 98.2 2.5E-06 8.5E-11 92.0 10.0 167 360-540 11-196 (524)
13 4gc0_A D-xylose-proton symport 97.6 0.00036 1.2E-08 74.1 11.9 135 30-166 291-427 (491)
14 2cfq_A Lactose permease; trans 97.3 8.6E-05 3E-09 78.0 3.6 69 357-425 3-74 (417)
No 1
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.84 E-value=2e-20 Score=198.11 Aligned_cols=401 Identities=14% Similarity=0.143 Sum_probs=255.4
Q ss_pred hccchHHHHHHHHHHHHhcCc-ccccccccHHHHhhhCCChhhHHHHHHHHhhhhhh-hhcchhhhccchhHHHHHHHHH
Q 008514 11 FFNNRWLVFVAAMWIQSCAGI-GYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGAL 88 (563)
Q Consensus 11 ~~~~Rw~~l~a~~~i~l~~Gt-~Y~fS~ys~~Lk~~lg~sq~~l~~i~~a~~vG~~~-gi~~G~l~D~~gp~~~~~iG~~ 88 (563)
..+.||..+..........+. .+.++.+-+.+.+++ +|.+|..++.....++..+ .++.|.+.||+|+|.++.+|.+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~ 100 (451)
T 1pw4_A 22 YRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLI 100 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHH
Confidence 345667766666666555553 477888889999999 9999999987777777755 8899999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcchhhhhHHHHHHHhcC-CCCCcchhhhHhhhhhhHHHHHHHHHH
Q 008514 89 QNFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAILTQVYTM 167 (563)
Q Consensus 89 ~~~~Gy~~~~l~~~g~i~~~s~~~l~~~~~l~g~g~~~~~ta~l~t~~k~FP-~~RG~~~Gl~~a~~GLSa~i~s~i~~~ 167 (563)
...+|..+....... . +++|.+.+.-++.|.|.+..+.+......+++| ++||.+.|+.-...+++..+-..+...
T Consensus 101 ~~~~~~~~~~~~~~~-~--~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~ 177 (451)
T 1pw4_A 101 LAAAVMLFMGFVPWA-T--SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLL 177 (451)
T ss_dssp HHHHHHHHHHHCHHH-H--SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHH
T ss_pred HHHHHHHHHHhhhhc-c--ccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 988888765441100 1 145666666777888888889999999999998 569999999988888887666544321
Q ss_pred hcCCChhHHHHHHHHHHHHHHHhhheeecccC-CCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHhhccccCChhHHHHH
Q 008514 168 IHAPDHANLIFMVAVGPAMVVIALMFIIRPVG-GHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLVEDLVDLNHTVIIIF 246 (563)
Q Consensus 168 ~f~~~~~~fll~la~~~~~v~l~~~~~vr~~~-~~~~~~~~~~~~f~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 246 (563)
+. ...+ .+ ..|.. .+ ..
T Consensus 178 l~--------------------------~~~g~w~--------~~f~~-------~~---------------------~~ 195 (451)
T 1pw4_A 178 GM--------------------------AWFNDWH--------AALYM-------PA---------------------FC 195 (451)
T ss_dssp HH--------------------------HHTCCST--------TCTHH-------HH---------------------HH
T ss_pred HH--------------------------HHhccHH--------HHHHH-------HH---------------------HH
Confidence 10 0000 00 00100 00 00
Q ss_pred HHHHHHHhhcccccchhhccccCCCChhhhhhcCCCCCCCCCCCCCcchhhhhcccccCCCCccCCCchhhHHHHHHHHH
Q 008514 247 TVILFVLLFIPIVIPIILSFFLERTDPAEEALLSKPENMEPGKSNQETDEVILSEVEDEKPKDVDLLPASERRKRIAQLQ 326 (563)
Q Consensus 247 ~~i~~~ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (563)
..+..++... +.++++++. +.+++++.+ ++.+++. ++
T Consensus 196 ~~~~~~~~~~---------~~~~~~~~~-----~~~~~~~~~---------------~~~~~~~------~~-------- 232 (451)
T 1pw4_A 196 AILVALFAFA---------MMRDTPQSC-----GLPPIEEYK---------------NDYPDDY------NE-------- 232 (451)
T ss_dssp HHHHHHHHHH---------HCCCSSTTT-----CCCSCTTTC---------------CC---------------------
T ss_pred HHHHHHHHHh---------hccCCHhhc-----CCCChhhhc---------------ccccccc------hh--------
Confidence 1111100000 111111100 000000000 0000000 00
Q ss_pred HHHHhhhhhhhhhhhccCCCCcCCCCcHHHHhhcHHHHHHHHHHHhhccchheeeechHHHHHH-hCCCchh--HHHHHH
Q 008514 327 ARLFHAAAEGAVRVKRRRGPHRGEDFTLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQS-LGYDNTH--IFVSMI 403 (563)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~p~~~~~~t~~~~l~s~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~-~g~~~~~--~~Vsl~ 403 (563)
. .+ + +....+...++.+|++.+|.+.+..++......++......+.++ .|.++.+ ...++.
T Consensus 233 -----------~-~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 297 (451)
T 1pw4_A 233 -----------K-AE-Q--ELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLY 297 (451)
T ss_dssp ---------------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHH
T ss_pred -----------h-hh-c--ccccccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 0 00 0 000112235778999999999998888777666667777777777 6887654 377889
Q ss_pred HHHHhhhhhhhhhhhhhh--hhhcCCchhHHHHHHHHHHHHHHHHHhhc---CchhHHHHHHHHHhhhhhhcchhHHHHH
Q 008514 404 SIWNFLGRVGGGYFSEII--VRDYAYPRPVAMAVAQFVMAIGHIFLGMG---WPGAMYVGTLLIGLGYGAHWAIVPAAAS 478 (563)
Q Consensus 404 si~n~~GRl~~G~lsD~~--~~~~~~~r~~~l~~~~~~~~~~~lll~~~---~~~~l~~~~~l~Gl~~G~~~~l~p~i~s 478 (563)
++++.+|++++|+++||+ +|| ........+...++.+++... ....+.+...+.|++++..+.....++.
T Consensus 298 ~~~~~~~~~~~g~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 372 (451)
T 1pw4_A 298 EYAGIPGTLLCGWMSDKVFRGNR-----GATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHAL 372 (451)
T ss_dssp HHHHHHHHHHHHHHHHHTSTTCH-----HHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCc-----hhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHH
Confidence 999999999999999998 552 222222222222444444432 2334566778889999999999999999
Q ss_pred HhhccCcchhhhhhhh----h-chhhhhhhccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 008514 479 ELFGLKKFGALYNFLT----L-ANPAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRTTN 548 (563)
Q Consensus 479 e~FG~k~fg~nyg~~~----~-a~~vg~~l~~~~~~~~~~~C~G~~cy~~~f~i~~~~~~~~~~l~l~l~~R~r~ 548 (563)
|.+..++.|+.+|+.. + +..+++.+.+...+ ...|+..|.+.+++++++.++.+++.++.++
T Consensus 373 ~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~--------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (451)
T 1pw4_A 373 ELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVD--------FFGWDGGFMVMIGGSILAVILLIVVMIGEKR 439 (451)
T ss_dssp HTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------SSCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH--------hcCcHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 9999999999999875 4 55666666554320 0128999999999999988887776655444
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.84 E-value=7.3e-20 Score=193.30 Aligned_cols=389 Identities=11% Similarity=0.086 Sum_probs=242.0
Q ss_pred ccchHHHHHHHHHHHHhcCcc-cccccccHHHHhhhCCChhhHHHHHHHHhhhhh-hhhcchhhhccchhHHHHHHHHHH
Q 008514 12 FNNRWLVFVAAMWIQSCAGIG-YLFGSISPVIKSSLNYNQKQIARLGVAKDLGDS-VGFLAGSLCEVLPIWGALLVGALQ 89 (563)
Q Consensus 12 ~~~Rw~~l~a~~~i~l~~Gt~-Y~fS~ys~~Lk~~lg~sq~~l~~i~~a~~vG~~-~gi~~G~l~D~~gp~~~~~iG~~~ 89 (563)
.+++|..++.........|.. +.++.+-|.+++++|+|.+|+.++.....++.. ..++.|.+.||+|+|.++.+|.+.
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~ 100 (438)
T 3o7q_A 21 SRSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFL 100 (438)
T ss_dssp -CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHH
Confidence 344555555555555555543 688888999999999999999998777777765 488999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcchhhhhHHHHHHHhcC-CCCCcchhhhHhhhhhhHHHHHHHHHHh
Q 008514 90 NFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAILTQVYTMI 168 (563)
Q Consensus 90 ~~~Gy~~~~l~~~g~i~~~s~~~l~~~~~l~g~g~~~~~ta~l~t~~k~FP-~~RG~~~Gl~~a~~GLSa~i~s~i~~~~ 168 (563)
..++..+.+... .. +++|.+.+.-++.|.|.+..++++.....+++| ++||.+.|+.-...+++..+-..+...+
T Consensus 101 ~~~~~~~~~~~~--~~--~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l 176 (438)
T 3o7q_A 101 YALGAALFWPAA--EI--MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSL 176 (438)
T ss_dssp HHHHHHHHHHHH--HT--TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHhcc--cc--ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 988888764432 12 257887777788889999999999999999998 5699999999999999987776555332
Q ss_pred c-CCChh---HHHHHHHHHHHHHHHhhheeecccCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHhhccccCChhHHH
Q 008514 169 H-APDHA---NLIFMVAVGPAMVVIALMFIIRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLVEDLVDLNHTVII 244 (563)
Q Consensus 169 f-~~~~~---~fll~la~~~~~v~l~~~~~vr~~~~~~~~~~~~~~~f~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 244 (563)
. +.... .-.. ..+ +++...+...........++..+
T Consensus 177 ~~~~~~~~~~~~~~------------------~~~------~~~~~~~~~~~~~~w~~~~~~~~---------------- 216 (438)
T 3o7q_A 177 ILSNVPHQSQDVLD------------------KMS------PEQLSAYKHSLVLSVQTPYMIIV---------------- 216 (438)
T ss_dssp HHTSSCCCCHHHHH------------------HSC------HHHHHHHHHHHHHHHHHHHHHHH----------------
T ss_pred Hhcccccccccccc------------------cCC------cchhhhhhhhhhhhHHHHHHHHH----------------
Confidence 2 11000 0000 000 00000000000000000000000
Q ss_pred HHHHHHHHHhhcccccchhhccccCCCChhhhhhcCCCCCCCCCCCCCcchhhhhcccccCCCCccCCCchhhHHHHHHH
Q 008514 245 IFTVILFVLLFIPIVIPIILSFFLERTDPAEEALLSKPENMEPGKSNQETDEVILSEVEDEKPKDVDLLPASERRKRIAQ 324 (563)
Q Consensus 245 ~~~~i~~~ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (563)
....+..++.+ +.+. ++ ++++.+ ++++ +
T Consensus 217 ~~~~~~~~~~~----------~~~~-p~-----------~~~~~~-------------~~~~--~--------------- 244 (438)
T 3o7q_A 217 AIVLLVALLIM----------LTKF-PA-----------LQSDNH-------------SDAK--Q--------------- 244 (438)
T ss_dssp HHHHHHHHHHH----------HCCC-CC-----------CTTTCC-------------CCSS--T---------------
T ss_pred HHHHHHHHHHH----------HHcC-Cc-----------cccccc-------------cccc--c---------------
Confidence 00000000000 0000 01 000000 0000 0
Q ss_pred HHHHHHhhhhhhhhhhhccCCCCcCCCCcHHHHhhcHHHHHHHHHHHhhccchheeeechHHH-HHHh-CCCchh--HHH
Q 008514 325 LQARLFHAAAEGAVRVKRRRGPHRGEDFTLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQM-SQSL-GYDNTH--IFV 400 (563)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~t~~~~l~s~~Fwll~~~~~~~~g~gl~~i~n~~~i-~~~~-g~~~~~--~~V 400 (563)
+ ....++++.+|++.+|...+..++..+....+.+...+. .++. |.+... ...
T Consensus 245 ---------------------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 301 (438)
T 3o7q_A 245 ---------------------G--SFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYL 301 (438)
T ss_dssp ---------------------T--SHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHH
T ss_pred ---------------------c--chhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHH
Confidence 0 001245678899999999999988888777777888888 7776 887664 377
Q ss_pred HHHHHHHhhhhhhhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHhhhhhhcchhHHHHHHh
Q 008514 401 SMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMGWPGAMYVGTLLIGLGYGAHWAIVPAAASEL 480 (563)
Q Consensus 401 sl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~~~~~~~lll~~~~~~~l~~~~~l~Gl~~G~~~~l~p~i~se~ 480 (563)
++..+.+.+||++.|+++||++||+ .+.....+..++.+++.........+...+.|++++..+.....++.|.
T Consensus 302 ~~~~~~~~~~~~~~g~l~~r~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 375 (438)
T 3o7q_A 302 TGTMVCFFIGRFTGTWLISRFAPHK------VLAAYALIAMALCLISAFAGGHVGLIALTLCSAFMSIQYPTIFSLGIKN 375 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHHH------HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchH------HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 8889999999999999999997743 2233344445554444444433445566888999999999999999999
Q ss_pred hccCcchhhhhhhh---hchhhhhhhccCCCCCCCCccccCcccHHHHHHHHHHHH
Q 008514 481 FGLKKFGALYNFLT---LANPAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCI 533 (563)
Q Consensus 481 FG~k~fg~nyg~~~---~a~~vg~~l~~~~~~~~~~~C~G~~cy~~~f~i~~~~~~ 533 (563)
++.+ -++.-++.. ++..++|.+.+... +..+.|+.+|.+.+.+++
T Consensus 376 ~~~~-~~~~~~~~~~~~~g~~~~~~~~g~l~-------~~~g~~~~~~~~~~~~~~ 423 (438)
T 3o7q_A 376 LGQD-TKYGSSFIVMTIIGGGIVTPVMGFVS-------DAAGNIPTAELIPALCFA 423 (438)
T ss_dssp CGGG-HHHHHHHHHHTTHHHHHHHHHHHHHH-------HHHTSSGGGGHHHHHHHH
T ss_pred cccc-ccchhhHHHHHHHHHHHHHHHHHHHH-------HHhcchHHHHHHHHHHHH
Confidence 9955 444444332 45666666665432 011237888877644433
No 3
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.65 E-value=2e-14 Score=154.46 Aligned_cols=416 Identities=11% Similarity=0.030 Sum_probs=221.4
Q ss_pred cccHHHHhh-----hCCChhhHHHHHHHHhhhhhh-hhcchhhhcc-chhHHHHHHHHHHHHHHHHHHHHHHhcCCCCch
Q 008514 37 SISPVIKSS-----LNYNQKQIARLGVAKDLGDSV-GFLAGSLCEV-LPIWGALLVGALQNFIGYGWVWLIVTGRAPVLP 109 (563)
Q Consensus 37 ~ys~~Lk~~-----lg~sq~~l~~i~~a~~vG~~~-gi~~G~l~D~-~gp~~~~~iG~~~~~~Gy~~~~l~~~g~i~~~s 109 (563)
...+.+++. +|+|.+|..++.....++..+ .+++|.+.|| +|+|.++.+|.++..+|..+.. + . ++
T Consensus 35 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~--~---~--~~ 107 (491)
T 4aps_A 35 ILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLA--L---P--FG 107 (491)
T ss_dssp HHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHH--S---C--CS
T ss_pred HHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHH--H---h--hh
Confidence 344556666 999999999987777777654 7889999999 8999999999998888876542 1 2 24
Q ss_pred HHHHHHHHHHhccCcchhhhhHHHHHHHhcC-CC--CCcchhhhHhhhhhhHHHHHHHHHHhcCCChhHHHHHHHHHHHH
Q 008514 110 LWAMCILIFVGNNGETYFNTAALVSCVQNFP-KS--RGPVVGILKGFAGLGGAILTQVYTMIHAPDHANLIFMVAVGPAM 186 (563)
Q Consensus 110 ~~~l~~~~~l~g~g~~~~~ta~l~t~~k~FP-~~--RG~~~Gl~~a~~GLSa~i~s~i~~~~f~~~~~~fll~la~~~~~ 186 (563)
+|.+.+.-++.|.|.+...++......++|| ++ ||.+.++.-....+++.+-..+...+.+.......+.+.....+
T Consensus 108 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~ 187 (491)
T 4aps_A 108 ASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMF 187 (491)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 5666666777788888888888888999997 45 66677776677777776655555443322222333333333334
Q ss_pred HHHhhheeecccCC-CCCCCCCCCCchhHHHHHHHHHHHHHHHHHHhhccccCChhHHHHHHHHHHHHhhcccccchhhc
Q 008514 187 VVIALMFIIRPVGG-HRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLVEDLVDLNHTVIIIFTVILFVLLFIPIVIPIILS 265 (563)
Q Consensus 187 v~l~~~~~vr~~~~-~~~~~~~~~~~f~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~ll~~~~~i~~~~~ 265 (563)
++++...+.++... ++.++++++..-.-... .. +..+.- .....+.. +.. .
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~---------~~~g~~-----l~~~~~~~-~~~----~---- 239 (491)
T 4aps_A 188 IGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKP-----LL---------VKVSLA-----VAGFIAII-VVM----N---- 239 (491)
T ss_dssp HHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHH-----HH---------HHCCCC-----CHHHHHHH-HHH----H----
T ss_pred HHHHHHHHhCcccccccccCCCCccccchhHH-----HH---------HHHHHH-----HHHHHHHH-HHH----H----
Confidence 44444333332211 11111111111000000 00 000000 00000000 000 0
Q ss_pred cccCCCChhhhhhcCCCCCCCCCCCCCcchhhhhcccccCCCCccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhccCC
Q 008514 266 FFLERTDPAEEALLSKPENMEPGKSNQETDEVILSEVEDEKPKDVDLLPASERRKRIAQLQARLFHAAAEGAVRVKRRRG 345 (563)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (563)
..+..+ . +...... . . ..... .........++
T Consensus 240 -~~~~~~-------------~------~~~~~~~-----------------~---~-----~~~~~-~~~~~~~~~~~-- 271 (491)
T 4aps_A 240 -LVGWNS-------------L------PAYINLL-----------------T---I-----VAIAI-PVFYFAWMISS-- 271 (491)
T ss_dssp -HHSSCC-------------T------THHHHHH-----------------H---H-----HHHHH-HHHHHHHHC----
T ss_pred -hccCcc-------------c------ccchhhh-----------------h---H-----HHHHH-HHHHHHHHhhc--
Confidence 000000 0 0000000 0 0 00000 00000000000
Q ss_pred CCcCCCCcHHHHhhcHHHHHHHHHHHhhccchheeeechHHHHHH-hCCC--chhHHHHHHHHHHhhhhhhhhhhhhhhh
Q 008514 346 PHRGEDFTLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQS-LGYD--NTHIFVSMISIWNFLGRVGGGYFSEIIV 422 (563)
Q Consensus 346 p~~~~~~t~~~~l~s~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~-~g~~--~~~~~Vsl~si~n~~GRl~~G~lsD~~~ 422 (563)
+ ..+..+..+...+|.+++..++....-....+.+....++ .+.+ ......++.++...++.++.|+++||++
T Consensus 272 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~ 347 (491)
T 4aps_A 272 V----KVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWK 347 (491)
T ss_dssp --------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred c----cccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHh
Confidence 0 0001111233345555544444433333344445555555 3444 2234677888889999999999999998
Q ss_pred hhcCCchhHHHHHHHHHHHHHHHHHhh----------cCchhHHHHHHHHHhhhhhhcchhHHHHHHhhccCcchhhhhh
Q 008514 423 RDYAYPRPVAMAVAQFVMAIGHIFLGM----------GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNF 492 (563)
Q Consensus 423 ~~~~~~r~~~l~~~~~~~~~~~lll~~----------~~~~~l~~~~~l~Gl~~G~~~~l~p~i~se~FG~k~fg~nyg~ 492 (563)
||+... ...+.....+.+++.+++.. .....+.+...+.|++.+........++.|.+..++-|+..|+
T Consensus 348 ~r~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~ 426 (491)
T 4aps_A 348 KNQPSS-PTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSM 426 (491)
T ss_dssp TC---C-HHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHH
T ss_pred ccCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHH
Confidence 865432 23333444444555433322 1233566688888999999999999999999999999998888
Q ss_pred hh----hchhhhhhhccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 008514 493 LT----LANPAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRTTNV 549 (563)
Q Consensus 493 ~~----~a~~vg~~l~~~~~~~~~~~C~G~~cy~~~f~i~~~~~~~~~~l~l~l~~R~r~~ 549 (563)
.. ++..+|+.+.+... ...|...|.+.+++++++.++.+.+.++.|+.
T Consensus 427 ~~~~~~~g~~i~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (491)
T 4aps_A 427 WFLSSSVGSALNAQLVTLYN---------AKSEVAYFSYFGLGSVVLGIVLVFLSKRIQGL 478 (491)
T ss_dssp HHHHHHHHHHHHHHHGGGGG---------GSSTTHHHHHTHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHHHHHh---------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65 45566666554433 12378889888888888887777766665553
No 4
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.62 E-value=1.6e-15 Score=157.25 Aligned_cols=319 Identities=12% Similarity=0.041 Sum_probs=207.1
Q ss_pred ccccccccHHHHhhhCCChhhHHHHHHHHhhhhh-hhhcchhhhccchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchH
Q 008514 32 GYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDS-VGFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPL 110 (563)
Q Consensus 32 ~Y~fS~ys~~Lk~~lg~sq~~l~~i~~a~~vG~~-~gi~~G~l~D~~gp~~~~~iG~~~~~~Gy~~~~l~~~g~i~~~s~ 110 (563)
.+.++.+-+.+++++|+|.+|...+.....++.. ..++.|.+.||+|+|.++.++.+...++..+.... +++
T Consensus 16 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-------~~~ 88 (375)
T 2gfp_A 16 QTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTT-------SSL 88 (375)
T ss_dssp HHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHH-------HHH
T ss_pred HHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh-------ccH
Confidence 3445556677899999999999998777777774 48899999999999999999999888887765433 256
Q ss_pred HHHHHHHHHhccCcchhhhhHHHHHHHhcC-CCCCcchhhhHhhhhhhHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHH
Q 008514 111 WAMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAILTQVYTMIHAPDHANLIFMVAVGPAMVVI 189 (563)
Q Consensus 111 ~~l~~~~~l~g~g~~~~~ta~l~t~~k~FP-~~RG~~~Gl~~a~~GLSa~i~s~i~~~~f~~~~~~fll~la~~~~~v~l 189 (563)
|.+....++.|.+.+..+++......+++| ++|+++.|+.-...+++..+-..+.....+ ..
T Consensus 89 ~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~-~~---------------- 151 (375)
T 2gfp_A 89 TVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDT-MW---------------- 151 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSC-HH----------------
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-hc----------------
Confidence 777777778888888888888899999997 679999999998888887666544421110 00
Q ss_pred hhheeecccCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHhhccccCChhHHHHHHHHHHHHhhcccccchhhccccC
Q 008514 190 ALMFIIRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLVEDLVDLNHTVIIIFTVILFVLLFIPIVIPIILSFFLE 269 (563)
Q Consensus 190 ~~~~~vr~~~~~~~~~~~~~~~f~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~ll~~~~~i~~~~~~~~~ 269 (563)
..+. .+ ...++..++.... . ..+.+
T Consensus 152 ---------------------~~~~---------~~------------------~~~~~~~~~~~~~-----~-~~~~~- 176 (375)
T 2gfp_A 152 ---------------------NWRA---------CY------------------LFLLVLCAGVTFS-----M-ARWMP- 176 (375)
T ss_dssp ---------------------HHHH---------HH------------------HHHHHHHHHHHCC-----C-CCSSC-
T ss_pred ---------------------cHHH---------HH------------------HHHHHHHHHHHHH-----H-HHHCc-
Confidence 0000 00 0011111100000 0 00010
Q ss_pred CCChhhhhhcCCCCCCCCCCCCCcchhhhhcccccCCCCccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhccCCCCcC
Q 008514 270 RTDPAEEALLSKPENMEPGKSNQETDEVILSEVEDEKPKDVDLLPASERRKRIAQLQARLFHAAAEGAVRVKRRRGPHRG 349 (563)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 349 (563)
| +++++ +++ + .
T Consensus 177 --~---------~~~~~-----------------~~~-~----------------------------------------~ 187 (375)
T 2gfp_A 177 --E---------TRPVD-----------------APR-T----------------------------------------R 187 (375)
T ss_dssp --C---------CSTTT-----------------CCC-C----------------------------------------C
T ss_pred --c---------cCCCC-----------------ccc-c----------------------------------------c
Confidence 0 00000 000 0 0
Q ss_pred CCCcHHHHhhcHHHHHHHHHHHhhccchheeeechHHHHHH-hCCCchh--HHHHHHHHHHhhhhhhhhhhhhhhhhhcC
Q 008514 350 EDFTLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQS-LGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYA 426 (563)
Q Consensus 350 ~~~t~~~~l~s~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~-~g~~~~~--~~Vsl~si~n~~GRl~~G~lsD~~~~~~~ 426 (563)
+..+.++.+|++++|.+.+..++.......+......+.++ .|.++.. ...++.+++..+|+++.|+++||.++
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~--- 264 (375)
T 2gfp_A 188 LLTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFST--- 264 (375)
T ss_dssp TTTCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHH---
T ss_pred HHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 01123578899999999988887766655565666666665 5666543 36778889999999999999998865
Q ss_pred CchhHHHHHHHHHHHHHHH--HHhh---cCchhHHHHHHHHHhhhhhhcchhHHHHHHhhccCcchhhhhhhhhchhhhh
Q 008514 427 YPRPVAMAVAQFVMAIGHI--FLGM---GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGS 501 (563)
Q Consensus 427 ~~r~~~l~~~~~~~~~~~l--ll~~---~~~~~l~~~~~l~Gl~~G~~~~l~p~i~se~FG~k~fg~nyg~~~~a~~vg~ 501 (563)
|... .... ....+.+ .+.. .....++....+.|+++|..+.....++.|.+. ++.|+.+|+......+|.
T Consensus 265 --~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~ 339 (375)
T 2gfp_A 265 --LMWQ-SVIC-CLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGS 339 (375)
T ss_dssp --HHHH-HHHH-HHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHH
T ss_pred --HHHH-HHHH-HHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHH
Confidence 1111 1111 0111211 1111 122345567888899999999999999999998 899999998876666666
Q ss_pred hhccC
Q 008514 502 IFTSM 506 (563)
Q Consensus 502 ~l~~~ 506 (563)
.+.+.
T Consensus 340 ~~~~~ 344 (375)
T 2gfp_A 340 GVLAS 344 (375)
T ss_dssp HCCST
T ss_pred HHHHH
Confidence 55553
No 5
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.53 E-value=1.3e-14 Score=154.00 Aligned_cols=175 Identities=11% Similarity=0.036 Sum_probs=108.9
Q ss_pred HHHHhhcHHHHHHHHHHHhhccchheee-echHHHHHHh-CCC---ch--hHHHHHHHHHHhhhhhhhhhhhhhhhhhcC
Q 008514 354 LTQALIKADFWLIFFSLLLGSGSGLTVI-DNLGQMSQSL-GYD---NT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYA 426 (563)
Q Consensus 354 ~~~~l~s~~Fwll~~~~~~~~g~gl~~i-~n~~~i~~~~-g~~---~~--~~~Vsl~si~n~~GRl~~G~lsD~~~~~~~ 426 (563)
.++.+|++++|.+++..++.. ...... .......++. +.. .. ....++..+.+.+|++..|+++||++||+
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~- 290 (417)
T 2cfq_A 213 ALELFRQPKLWFLSLYVIGVS-CTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKN- 290 (417)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH-
T ss_pred HHHHhcCCchhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHH-
Confidence 457789999998776644332 122221 2233333332 211 11 12456677889999999999999998743
Q ss_pred CchhHHHHHHHHHHHHHHHHHhhc-CchhHHHHHHHHHhhhhhhcchhHHHHHHhhccCcchhhhhhh-h----hchhhh
Q 008514 427 YPRPVAMAVAQFVMAIGHIFLGMG-WPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFL-T----LANPAG 500 (563)
Q Consensus 427 ~~r~~~l~~~~~~~~~~~lll~~~-~~~~l~~~~~l~Gl~~G~~~~l~p~i~se~FG~k~fg~nyg~~-~----~a~~vg 500 (563)
.+.....+.+++.+++... +...+.+...+.+++++........+++|.+..+.-|+.+|+. . ++..+|
T Consensus 291 -----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~g 365 (417)
T 2cfq_A 291 -----ALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFM 365 (417)
T ss_dssp -----HHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHh
Confidence 1223334444444444433 2334555566678888777777788999999999999998874 4 455666
Q ss_pred hhhccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHHH
Q 008514 501 SIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILV 543 (563)
Q Consensus 501 ~~l~~~~~~~~~~~C~G~~cy~~~f~i~~~~~~~~~~l~l~l~ 543 (563)
|.+.+...+ . ..|+..|.+.+++++++.++.+.+.
T Consensus 366 p~l~G~l~~-------~-~g~~~~f~~~~~~~l~~~~~~~~~~ 400 (417)
T 2cfq_A 366 SVLAGNMYE-------S-IGFQGAYLVLGLVALGFTLISVFTL 400 (417)
T ss_dssp THHHHTHHH-------H-SHHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred hhhHHHHHH-------h-cCcHHHHHHHHHHHHHHHHHHHhhh
Confidence 666554320 0 1288899998888888877665433
No 6
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.39 E-value=1.5e-11 Score=131.85 Aligned_cols=129 Identities=16% Similarity=0.072 Sum_probs=88.9
Q ss_pred ccccccc---HHHHhhhCC----C----hhhHHHHHHHHhhhhhh-hhcchhhhccchhHHHHHHHHHHHHHHHHHHHHH
Q 008514 33 YLFGSIS---PVIKSSLNY----N----QKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLI 100 (563)
Q Consensus 33 Y~fS~ys---~~Lk~~lg~----s----q~~l~~i~~a~~vG~~~-gi~~G~l~D~~gp~~~~~iG~~~~~~Gy~~~~l~ 100 (563)
|..++++ +.+++.++. + .++..++..+..+|..+ +++.|.+.||+|+|.+++++.++..+|-.+....
T Consensus 26 yd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~ 105 (491)
T 4gc0_A 26 YDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWP 105 (491)
T ss_dssp HHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555 455555533 2 23444556666778766 5789999999999999999999887776643221
Q ss_pred HhcCC-----------CCchHHHHHHHHHHhccCcchhhhhHHHHHHHhcC-CCCCcchhhhHhhhhhhHHHH
Q 008514 101 VTGRA-----------PVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAIL 161 (563)
Q Consensus 101 ~~g~i-----------~~~s~~~l~~~~~l~g~g~~~~~ta~l~t~~k~FP-~~RG~~~Gl~~a~~GLSa~i~ 161 (563)
..+.. -+++++.+.+.=++.|.|.+..++.+......+.| ++||...++.-.+..++..+-
T Consensus 106 ~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~ 178 (491)
T 4gc0_A 106 ELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLV 178 (491)
T ss_dssp TTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhh
Confidence 11100 12457888888888889999888888888899998 469998888776666555443
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.35 E-value=1.8e-11 Score=132.49 Aligned_cols=142 Identities=8% Similarity=0.011 Sum_probs=98.2
Q ss_pred ccchHHHHHHHHHHHHhcCcccccccccHHHHhhhC------CChhhHHHHHHHHhhhhhh-hhcchhhhccc-hhHHHH
Q 008514 12 FNNRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLN------YNQKQIARLGVAKDLGDSV-GFLAGSLCEVL-PIWGAL 83 (563)
Q Consensus 12 ~~~Rw~~l~a~~~i~l~~Gt~Y~fS~ys~~Lk~~lg------~sq~~l~~i~~a~~vG~~~-gi~~G~l~D~~-gp~~~~ 83 (563)
.++-|...+...+...+.... .+.....+++.+| +|..+...+.....++..+ .+++|.+.||+ |+|.++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~--~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~ 88 (524)
T 2xut_A 11 PRQIPYIIASEACERFSFYGM--RNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTI 88 (524)
T ss_dssp --CCTHHHHHHHHHHHHHHHH--HHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 344455555555444433221 2334445788899 9999999986666777654 77899999999 999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcchhhhhHHHHHHHhcCC-CCCcchhh---hHhhhhhhHH
Q 008514 84 LVGALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFPK-SRGPVVGI---LKGFAGLGGA 159 (563)
Q Consensus 84 ~iG~~~~~~Gy~~~~l~~~g~i~~~s~~~l~~~~~l~g~g~~~~~ta~l~t~~k~FP~-~RG~~~Gl---~~a~~GLSa~ 159 (563)
.++.+...+++.+..+. . .++|.+.+..++.|.|.+..+++......++||+ +||.+.++ .-....+++.
T Consensus 89 ~~~~~~~~~~~~~~~~~--~----~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ 162 (524)
T 2xut_A 89 LWLSLIYCVGHAFLAIF--E----HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSF 162 (524)
T ss_dssp HHHHHHHHHHHHHHHHT--S----SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh--c----ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHH
Confidence 99999888887764322 1 1456666666777888888888888889999985 68877766 5555555554
Q ss_pred HH
Q 008514 160 IL 161 (563)
Q Consensus 160 i~ 161 (563)
+-
T Consensus 163 ~g 164 (524)
T 2xut_A 163 FA 164 (524)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 8
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=98.52 E-value=4.3e-07 Score=97.04 Aligned_cols=171 Identities=13% Similarity=0.145 Sum_probs=121.1
Q ss_pred HHHHHHHHHHHhhccchheeeechHHHHHH------hCCCchhH--HHHHHHHHHhhhhhhhhhhhhh-hhhhcCCchhH
Q 008514 361 ADFWLIFFSLLLGSGSGLTVIDNLGQMSQS------LGYDNTHI--FVSMISIWNFLGRVGGGYFSEI-IVRDYAYPRPV 431 (563)
Q Consensus 361 ~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~------~g~~~~~~--~Vsl~si~n~~GRl~~G~lsD~-~~~~~~~~r~~ 431 (563)
+.+|.+++..++....-..+...+.+..++ +|.++.+. ..++..+.+.++++.+|+++|| ++||+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~------ 86 (491)
T 4aps_A 13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARP------ 86 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHH------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchH------
Confidence 467888877776665555555666666665 68876643 7899999999999999999999 88843
Q ss_pred HHHHHHHHHHHHHHHHhhc-CchhHHHHHHHHHhhhhhhcchhHHHHHHhhccCc--chhhhhhhh----hchhhhhhhc
Q 008514 432 AMAVAQFVMAIGHIFLGMG-WPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKK--FGALYNFLT----LANPAGSIFT 504 (563)
Q Consensus 432 ~l~~~~~~~~~~~lll~~~-~~~~l~~~~~l~Gl~~G~~~~l~p~i~se~FG~k~--fg~nyg~~~----~a~~vg~~l~ 504 (563)
.+....++..++.+++... +...++++-.+.|++.|......+.+++|+|..++ -++.+++.. ++..+||.+.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~ 166 (491)
T 4aps_A 87 AVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIV 166 (491)
T ss_dssp HHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHH
Confidence 2344455556665555543 34567788899999999999999999999999877 555666543 4555555554
Q ss_pred cCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHHHhh
Q 008514 505 SMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHR 545 (563)
Q Consensus 505 ~~~~~~~~~~C~G~~cy~~~f~i~~~~~~~~~~l~l~l~~R 545 (563)
+.... ...|+..|++.+..+++++++.++...|
T Consensus 167 ~~l~~--------~~g~~~~f~~~~~~~~~~~~~~~~~~~~ 199 (491)
T 4aps_A 167 GAAQE--------AAGYHVAFSLAAIGMFIGLLVYYFGGKK 199 (491)
T ss_dssp HHHHH--------HSCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHh--------hhhHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 43210 1238999999888777777666555444
No 9
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=98.42 E-value=4.9e-07 Score=94.93 Aligned_cols=172 Identities=13% Similarity=0.087 Sum_probs=116.3
Q ss_pred hcHHHHHHHHHHHhhccchheeeechHHHHHHhCCCchh--HHHHHHHHHHhhhhhhhhhhhhhhhhhcCCchhHHHHHH
Q 008514 359 IKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVA 436 (563)
Q Consensus 359 ~s~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~~g~~~~~--~~Vsl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~ 436 (563)
+.+.++.+++..++....-.++..-+..+.+++ .++.+ ...++..+...++.+.+|+++||++||+ .+.+.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~------~l~~~ 98 (451)
T 1pw4_A 26 RWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRV------FLPAG 98 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHH------HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchH------HHHHH
Confidence 345556555555554443333444456666677 66554 3788999999999999999999998843 33444
Q ss_pred HHHHHHHHHHHhh-----cCchhHHHHHHHHHhhhhhhcchhHHHHHHhhccCcchhhhhhhhhch----hhhhhhccCC
Q 008514 437 QFVMAIGHIFLGM-----GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLAN----PAGSIFTSMP 507 (563)
Q Consensus 437 ~~~~~~~~lll~~-----~~~~~l~~~~~l~Gl~~G~~~~l~p~i~se~FG~k~fg~nyg~~~~a~----~vg~~l~~~~ 507 (563)
.++.+++.++... .....++++-++.|++.|..+.....+++|++..|+-++..|+...+. .+|+.+.+..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l 178 (451)
T 1pw4_A 99 LILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLG 178 (451)
T ss_dssp HHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555556555443 334467788999999999999999999999999999999888876443 4444433221
Q ss_pred CCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHHHh
Q 008514 508 RVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVH 544 (563)
Q Consensus 508 ~~~~~~~C~G~~cy~~~f~i~~~~~~~~~~l~l~l~~ 544 (563)
.. . .| .++.+|++.+.++++..++..+...
T Consensus 179 ~~-~----~g--~w~~~f~~~~~~~~~~~~~~~~~~~ 208 (451)
T 1pw4_A 179 MA-W----FN--DWHAALYMPAFCAILVALFAFAMMR 208 (451)
T ss_dssp HH-H----TC--CSTTCTHHHHHHHHHHHHHHHHHCC
T ss_pred HH-H----hc--cHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 10 0 11 3788898888887776666555443
No 10
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.34 E-value=4.8e-07 Score=93.13 Aligned_cols=160 Identities=9% Similarity=0.135 Sum_probs=109.2
Q ss_pred HHHHHHHhhccchheeeechHHHHHHhCCCchhH--HHHHHHHHHhhhhhhhhhhhhhhhhhcCCchhHHHHHHHHHHHH
Q 008514 365 LIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHI--FVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAI 442 (563)
Q Consensus 365 ll~~~~~~~~g~gl~~i~n~~~i~~~~g~~~~~~--~Vsl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~~~~~ 442 (563)
++++..++....-.++......+.+++|.++.+. ..++..+.+.++.+.+|+++||++||+.. .....+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~------~~~~~~~~~ 77 (375)
T 2gfp_A 4 MLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVI------LVGMSIFML 77 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCC------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhH------HHHHHHHHH
Confidence 3444444443333444455666777888887654 78899999999999999999999986654 233333444
Q ss_pred HHHHHhh-cCchhHHHHHHHHHhhhhhhcchhHHHHHHhhccCcchhhhhhhhhc----hhhhhhhccCCCCCCCCcccc
Q 008514 443 GHIFLGM-GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLA----NPAGSIFTSMPRVDEPLKCEG 517 (563)
Q Consensus 443 ~~lll~~-~~~~~l~~~~~l~Gl~~G~~~~l~p~i~se~FG~k~fg~nyg~~~~a----~~vg~~l~~~~~~~~~~~C~G 517 (563)
+.++... .+...+++...+.|++.|........+++|++..|+.++..++...+ ..+|+.+.+....
T Consensus 78 ~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~-------- 149 (375)
T 2gfp_A 78 ATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDT-------- 149 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSC--------
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH--------
Confidence 4433333 23346777888999999999999999999999999999888887644 4444444332220
Q ss_pred CcccHHHHHHHHHHHHHHHHH
Q 008514 518 SICYFLTSMIMSGLCIVAVIL 538 (563)
Q Consensus 518 ~~cy~~~f~i~~~~~~~~~~l 538 (563)
...|+..|.+.+.++++..++
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~ 170 (375)
T 2gfp_A 150 MWNWRACYLFLLVLCAGVTFS 170 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC
T ss_pred hccHHHHHHHHHHHHHHHHHH
Confidence 123888888887776665543
No 11
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=98.28 E-value=5.4e-06 Score=86.71 Aligned_cols=116 Identities=16% Similarity=0.130 Sum_probs=86.7
Q ss_pred hHHHHHHhCCCchhH--HHHHHHHHHhhhhhhhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHHH---hh-cCchhHHH
Q 008514 384 LGQMSQSLGYDNTHI--FVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFL---GM-GWPGAMYV 457 (563)
Q Consensus 384 ~~~i~~~~g~~~~~~--~Vsl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~~~~~~~lll---~~-~~~~~l~~ 457 (563)
+..+.+++|.++.+. ..++..+...++.+.+|.++||++||+. +.+..++.+++.++. .. .+...+++
T Consensus 49 ~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~------l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 122 (438)
T 3o7q_A 49 LPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAG------IITGLFLYALGAALFWPAAEIMNYTLFLV 122 (438)
T ss_dssp HHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHH------HHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHH------HHHHHHHHHHHHHHHHhccccccHHHHHH
Confidence 455667789887754 7899999999999999999999988442 344455555555544 33 33446777
Q ss_pred HHHHHHhhhhhhcchhHHHHHHhhccCcchhhhhhhhh----chhhhhhhcc
Q 008514 458 GTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTL----ANPAGSIFTS 505 (563)
Q Consensus 458 ~~~l~Gl~~G~~~~l~p~i~se~FG~k~fg~nyg~~~~----a~~vg~~l~~ 505 (563)
+-.+.|++.|........+++|++..|+-++..|+... +..+|+.+.+
T Consensus 123 ~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~ 174 (438)
T 3o7q_A 123 GLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQ 174 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999998887776654 4444544443
No 12
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.24 E-value=2.5e-06 Score=91.97 Aligned_cols=167 Identities=16% Similarity=0.131 Sum_probs=113.9
Q ss_pred cHHHHHHHHHHHhhccchheeeechHHHHH-HhC------CCchh--HHHHHHHHHHhhhhhhhhhhhhhh-hhhcCCch
Q 008514 360 KADFWLIFFSLLLGSGSGLTVIDNLGQMSQ-SLG------YDNTH--IFVSMISIWNFLGRVGGGYFSEII-VRDYAYPR 429 (563)
Q Consensus 360 s~~Fwll~~~~~~~~g~gl~~i~n~~~i~~-~~g------~~~~~--~~Vsl~si~n~~GRl~~G~lsD~~-~~~~~~~r 429 (563)
++.+|.+++..++....-.++...+....+ ++| .++.+ ...+++.+...++.+.+|+++||+ +||+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~--- 87 (524)
T 2xut_A 11 PRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNT--- 87 (524)
T ss_dssp --CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHH---
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH---
Confidence 467788877777766655555556665544 577 77654 378899999999999999999999 87432
Q ss_pred hHHHHHHHHHHHHHHHHHhhc--CchhHHHHHHHHHhhhhhhcchhHHHHHHhhccCcchh---hhhhh----hhchhhh
Q 008514 430 PVAMAVAQFVMAIGHIFLGMG--WPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGA---LYNFL----TLANPAG 500 (563)
Q Consensus 430 ~~~l~~~~~~~~~~~lll~~~--~~~~l~~~~~l~Gl~~G~~~~l~p~i~se~FG~k~fg~---nyg~~----~~a~~vg 500 (563)
+.+..++.+++.+++... ....++++..+.|++.|......+++++|+|..++-++ .+|+. .++..+|
T Consensus 88 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g 164 (524)
T 2xut_A 88 ---ILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFA 164 (524)
T ss_dssp ---HHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHH
Confidence 233444555555554433 34467778889999999999999999999999887643 33333 3555666
Q ss_pred hhhccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHH
Q 008514 501 SIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSM 540 (563)
Q Consensus 501 ~~l~~~~~~~~~~~C~G~~cy~~~f~i~~~~~~~~~~l~l 540 (563)
+.+.+.... ...|+..|.+.+.+++++.++.+
T Consensus 165 ~~~~~~l~~--------~~g~~~~f~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 165 SLSMPLLLK--------NFGAAVAFGIPGVLMFVATVFFW 196 (524)
T ss_dssp HHTSTHHHH--------TSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhc--------cccHHHHHHHHHHHHHHHHHHHH
Confidence 665442210 12389999988877766655543
No 13
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=97.56 E-value=0.00036 Score=74.06 Aligned_cols=135 Identities=15% Similarity=0.067 Sum_probs=90.5
Q ss_pred CcccccccccHHHHhhhCCChhhHHHHHHHHhhhhh-hhhcchhhhccchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Q 008514 30 GIGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDS-VGFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVL 108 (563)
Q Consensus 30 Gt~Y~fS~ys~~Lk~~lg~sq~~l~~i~~a~~vG~~-~gi~~G~l~D~~gp~~~~~iG~~~~~~Gy~~~~l~~~g~i~~~ 108 (563)
...+....|.+.+.+..+.+..+....+....+... ..++++.+.||+|+|..++.+.....++...+........+.
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~- 369 (491)
T 4gc0_A 291 VGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPG- 369 (491)
T ss_dssp TCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCH-
T ss_pred hhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccch-
Confidence 345677789999999999998877766555445443 467899999999999999888887777766554444443221
Q ss_pred hHHHHHHHHHHhccCcchhhhhHHHHHHHhcCC-CCCcchhhhHhhhhhhHHHHHHHHH
Q 008514 109 PLWAMCILIFVGNNGETYFNTAALVSCVQNFPK-SRGPVVGILKGFAGLGGAILTQVYT 166 (563)
Q Consensus 109 s~~~l~~~~~l~g~g~~~~~ta~l~t~~k~FP~-~RG~~~Gl~~a~~GLSa~i~s~i~~ 166 (563)
....++.+.+..+.+.++. ..+-.-...-||. .|+++.|+..+..-+++.+.+.+..
T Consensus 370 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p 427 (491)
T 4gc0_A 370 IVALLSMLFYVAAFAMSWG-PVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFP 427 (491)
T ss_dssp HHHHHHHHHHHHHHHTTTT-HHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHhHHH-HHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222233333344444432 2333456688995 5999999998887788877765553
No 14
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=97.34 E-value=8.6e-05 Score=78.00 Aligned_cols=69 Identities=13% Similarity=0.073 Sum_probs=54.1
Q ss_pred HhhcHHHHHHHHHHHhhccchheeeechHHHHHH-hCCCchh--HHHHHHHHHHhhhhhhhhhhhhhhhhhc
Q 008514 357 ALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQS-LGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDY 425 (563)
Q Consensus 357 ~l~s~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~-~g~~~~~--~~Vsl~si~n~~GRl~~G~lsD~~~~~~ 425 (563)
.+|+++||.+....++....-.++..-+....++ +|.++.+ ..+++..+...++++.+|+++||++||+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~ 74 (417)
T 2cfq_A 3 YLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRK 74 (417)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCC
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH
Confidence 5789999999887766555444555566665654 7887764 4889999999999999999999999854
Done!