Query 008514
Match_columns 563
No_of_seqs 149 out of 715
Neff 7.2
Searched_HMMs 13730
Date Mon Mar 25 05:20:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008514.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/008514hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 99.9 6E-22 4.4E-26 205.8 18.4 413 10-556 18-444 (447)
2 d1pv7a_ f.38.1.2 (A:) Lactose 99.6 9.5E-15 6.9E-19 146.8 20.1 137 399-549 264-406 (417)
3 d1pw4a_ f.38.1.1 (A:) Glycerol 98.6 7.9E-08 5.7E-12 97.8 11.7 169 363-544 23-205 (447)
4 d1pv7a_ f.38.1.2 (A:) Lactose 98.0 7.8E-06 5.7E-10 80.3 9.2 69 357-425 3-74 (417)
5 d2e74f1 f.23.25.1 (F:1-32) Pet 9.9 43 0.0031 19.6 0.8 14 490-503 13-26 (32)
6 d1v54i_ f.23.3.1 (I:) Mitochon 9.3 1E+02 0.0075 22.0 2.9 35 525-559 21-56 (73)
7 d1e3oc2 a.35.1.1 (C:1-75) Oct- 9.0 85 0.0062 22.6 2.3 18 38-55 12-32 (75)
8 d1au7a2 a.35.1.1 (A:5-76) Pit- 6.6 1.3E+02 0.0092 21.5 2.3 18 38-55 8-28 (72)
9 d2ppxa1 a.35.1.3 (A:30-91) Unc 6.2 1.2E+02 0.0087 20.4 2.0 15 41-55 6-20 (62)
10 d2auwa1 a.35.1.10 (A:88-154) H 5.2 1.5E+02 0.011 20.6 2.0 15 41-55 8-22 (67)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=99.87 E-value=6e-22 Score=205.85 Aligned_cols=413 Identities=14% Similarity=0.151 Sum_probs=250.5
Q ss_pred hhccchHHHHHHHHHHHHhcC-cccccccccHHHHhhhCCChhhHHHHHHHHhhhhhh-hhcchhhhccchhHHHHHHHH
Q 008514 10 SFFNNRWLVFVAAMWIQSCAG-IGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGA 87 (563)
Q Consensus 10 ~~~~~Rw~~l~a~~~i~l~~G-t~Y~fS~ys~~Lk~~lg~sq~~l~~i~~a~~vG~~~-gi~~G~l~D~~gp~~~~~iG~ 87 (563)
+..+.||.+++...+...+.. ....+++..|.++ ++|+|.+|+.++..+..++..+ .++.|.+.||+|+|.++.+|.
T Consensus 18 ~~~~~~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~ 96 (447)
T d1pw4a_ 18 TYRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGL 96 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHH
Confidence 334557887776655444433 3356777778776 5899999999987777777755 789999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcchhhhhHHHHHHHhcCC-CCCcchhhhHhhhhhhHHHHHHHHH
Q 008514 88 LQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFPK-SRGPVVGILKGFAGLGGAILTQVYT 166 (563)
Q Consensus 88 ~~~~~Gy~~~~l~~~g~i~~~s~~~l~~~~~l~g~g~~~~~ta~l~t~~k~FP~-~RG~~~Gl~~a~~GLSa~i~s~i~~ 166 (563)
++..++..+......- ..+++.+.+..++.|.+.+..+.++.....++||+ +||.+.|+.-.+.++++.+-..+..
T Consensus 97 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~ 173 (447)
T d1pw4a_ 97 ILAAAVMLFMGFVPWA---TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFL 173 (447)
T ss_dssp HHHHHHHHHHHHCHHH---HSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHH
T ss_pred HHHHHHHhhccccchh---hhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhh
Confidence 9887777654332111 01356666677778888888888999999999985 5999999998888888766543332
Q ss_pred HhcCCChhHHHHHHHHHHHHHHHhhheeecccCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHhhccccCChhHHHHH
Q 008514 167 MIHAPDHANLIFMVAVGPAMVVIALMFIIRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLVEDLVDLNHTVIIIF 246 (563)
Q Consensus 167 ~~f~~~~~~fll~la~~~~~v~l~~~~~vr~~~~~~~~~~~~~~~f~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 246 (563)
... . ..... ...+.... ..
T Consensus 174 ~~~----------------------~----~~~~w-------~~~~~~~~----------------------------~~ 192 (447)
T d1pw4a_ 174 LGM----------------------A----WFNDW-------HAALYMPA----------------------------FC 192 (447)
T ss_dssp HHH----------------------H----HTCCS-------TTCTHHHH----------------------------HH
T ss_pred hHh----------------------h----hhhcc-------cccchhhh----------------------------hh
Confidence 100 0 00000 00110000 00
Q ss_pred HHHHHHHhhcccccchhhccccCCCChhhhhhcCCCCCCCCCCCCCcchhhhhcccccCCCCccCCCchhhHHHHHHHHH
Q 008514 247 TVILFVLLFIPIVIPIILSFFLERTDPAEEALLSKPENMEPGKSNQETDEVILSEVEDEKPKDVDLLPASERRKRIAQLQ 326 (563)
Q Consensus 247 ~~i~~~ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (563)
..+..++.+. +.++++++. . .+..++.+ ++.+++.+ ++
T Consensus 193 ~~~~~~~~~~---------~~~~~~~~~--~---~~~~~~~~---------------~~~~~~~~-----~~-------- 230 (447)
T d1pw4a_ 193 AILVALFAFA---------MMRDTPQSC--G---LPPIEEYK---------------NDYPDDYN-----EK-------- 230 (447)
T ss_dssp HHHHHHHHHH---------HCCCSSTTT--C---CCSCTTTC---------------CC---------------------
T ss_pred HHHHHHHHHH---------hcccchhhc--c---cchhhhhh---------------hhcccchh-----hc--------
Confidence 0011100000 111111100 0 00000000 00000000 00
Q ss_pred HHHHhhhhhhhhhhhccCCCCcCCCCcHHHHhhcHHHHHHHHHHHhhccchheeeechHHHHHH-hCCCchh--HHHHHH
Q 008514 327 ARLFHAAAEGAVRVKRRRGPHRGEDFTLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQS-LGYDNTH--IFVSMI 403 (563)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~p~~~~~~t~~~~l~s~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~-~g~~~~~--~~Vsl~ 403 (563)
.++ .....+...++.++++.+|.+....++.......+........++ .+.+..+ ...++.
T Consensus 231 -------------~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (447)
T d1pw4a_ 231 -------------AEQ---ELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLY 294 (447)
T ss_dssp ---------------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHH
T ss_pred -------------ccc---ccchhhHHHHHHHcCchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcc
Confidence 000 000112345678899999999988888776666666655555554 4666543 378889
Q ss_pred HHHHhhhhhhhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHhh---cCchhHHHHHHHHHhhhhhhcchhHHHHHHh
Q 008514 404 SIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGM---GWPGAMYVGTLLIGLGYGAHWAIVPAAASEL 480 (563)
Q Consensus 404 si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~~~~~~~lll~~---~~~~~l~~~~~l~Gl~~G~~~~l~p~i~se~ 480 (563)
.+.+.+|++++|+++||++|++... .......+..++.+++.. .......+...+.|++.++........+.|.
T Consensus 295 ~~~~~~~~~~~g~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 371 (447)
T d1pw4a_ 295 EYAGIPGTLLCGWMSDKVFRGNRGA---TGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALEL 371 (447)
T ss_dssp HHHHHHHHHHHHHHHHHTSTTCHHH---HHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHT
T ss_pred hhhhhhhhhhhhhhhhhcccccccc---ccchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999997754321 112222222222222222 1233455677788999999999999999999
Q ss_pred hccCcchhhhhhhhh-----chhhhhhhccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Q 008514 481 FGLKKFGALYNFLTL-----ANPAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRTTNVYSHLYG 555 (563)
Q Consensus 481 FG~k~fg~nyg~~~~-----a~~vg~~l~~~~~~~~~~~C~G~~cy~~~f~i~~~~~~~~~~l~l~l~~R~r~~~~~~~~ 555 (563)
++.++.|+..|+... +..+++.+.+...+ .-.|+..|.+..+++++++++...+..++||..+++.+
T Consensus 372 ~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~--------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 443 (447)
T d1pw4a_ 372 APKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVD--------FFGWDGGFMVMIGGSILAVILLIVVMIGEKRRHEQLLQ 443 (447)
T ss_dssp SCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------SSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGG
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HhChHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 999999999987643 23334544443220 01278899999999888888888877777766665544
Q ss_pred c
Q 008514 556 K 556 (563)
Q Consensus 556 ~ 556 (563)
+
T Consensus 444 e 444 (447)
T d1pw4a_ 444 E 444 (447)
T ss_dssp G
T ss_pred h
Confidence 4
No 2
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=99.61 E-value=9.5e-15 Score=146.82 Aligned_cols=137 Identities=12% Similarity=-0.019 Sum_probs=101.2
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHhhc-CchhHHHHHHHHHhhhhhhcchhHHHH
Q 008514 399 FVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMG-WPGAMYVGTLLIGLGYGAHWAIVPAAA 477 (563)
Q Consensus 399 ~Vsl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~~~~~~~lll~~~-~~~~l~~~~~l~Gl~~G~~~~l~p~i~ 477 (563)
..+...+...+++...|.+.||.++++ .+.+...+.+++.+++... ....+++..++.|+++|..+.....++
T Consensus 264 ~~~~~~~~~~~~~~~~~~l~~r~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 337 (417)
T d1pv7a_ 264 VTTMGELLNASIMFFAPLIINRIGGKN------ALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYI 337 (417)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHCHHH------HHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccchhhhhhhhccccccc------chhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 566778888999999999999987633 3344445555555555443 344677788889999999999999999
Q ss_pred HHhhccCcchhhhhhhh-----hchhhhhhhccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 008514 478 SELFGLKKFGALYNFLT-----LANPAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRTTNV 549 (563)
Q Consensus 478 se~FG~k~fg~nyg~~~-----~a~~vg~~l~~~~~~~~~~~C~G~~cy~~~f~i~~~~~~~~~~l~l~l~~R~r~~ 549 (563)
.|.+..|+-|+.+|+.+ ++..+||.+.+...+ .-.|+.+|++.+++++++.++.+++.+++|+.
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~--------~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 406 (417)
T d1pv7a_ 338 TSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYE--------SIGFQGAYLVLGLVALGFTLISVFTLSGPGPL 406 (417)
T ss_dssp HHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHH--------HHCHHHHHHHHHHHHHHHHHHHHHHSCCSSCT
T ss_pred HHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHCHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Confidence 99999999999988642 345566666554320 01289999999999988888888887776654
No 3
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=98.60 E-value=7.9e-08 Score=97.78 Aligned_cols=169 Identities=15% Similarity=0.171 Sum_probs=112.1
Q ss_pred HHHHHHHHHhhccchh---eeeechHHHHHHhCCCchhH--HHHHHHHHHhhhhhhhhhhhhhhhhhcCCchhHHHHHHH
Q 008514 363 FWLIFFSLLLGSGSGL---TVIDNLGQMSQSLGYDNTHI--FVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQ 437 (563)
Q Consensus 363 Fwll~~~~~~~~g~gl---~~i~n~~~i~~~~g~~~~~~--~Vsl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~ 437 (563)
-|.+++..+++..... ..++.+.|..++.|.++++. ..+++.++..++.+.+|+++||++||+. +....
T Consensus 23 ~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~------~~~~~ 96 (447)
T d1pw4a_ 23 RWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVF------LPAGL 96 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHH------HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHH------HHHHH
Confidence 3555555555433332 23445556667788887754 7899999999999999999999988542 23334
Q ss_pred HHHHHHHHHHhh-----cCchhHHHHHHHHHhhhhhhcchhHHHHHHhhccCcchhhhhhhhhchhhhhhhcc----CCC
Q 008514 438 FVMAIGHIFLGM-----GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSIFTS----MPR 508 (563)
Q Consensus 438 ~~~~~~~lll~~-----~~~~~l~~~~~l~Gl~~G~~~~l~p~i~se~FG~k~fg~nyg~~~~a~~vg~~l~~----~~~ 508 (563)
.+.+++.++... .....+++.-.+.|++.|..+.....+++|+|..|+-|+..|+...+..+|..+.+ ...
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~ 176 (447)
T d1pw4a_ 97 ILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGM 176 (447)
T ss_dssp HHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHH
T ss_pred HHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHh
Confidence 444444443322 23346777888999999999999999999999999999999987765555544433 111
Q ss_pred CCCCCccccCcccHHHHHHHHHHHHHHHHHHHHHHh
Q 008514 509 VDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVH 544 (563)
Q Consensus 509 ~~~~~~C~G~~cy~~~f~i~~~~~~~~~~l~l~l~~ 544 (563)
...+.++..|++...++++..++.+.+.+
T Consensus 177 -------~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 205 (447)
T d1pw4a_ 177 -------AWFNDWHAALYMPAFCAILVALFAFAMMR 205 (447)
T ss_dssp -------HHTCCSTTCTHHHHHHHHHHHHHHHHHCC
T ss_pred -------hhhhcccccchhhhhhHHHHHHHHHHhcc
Confidence 00123677777777766665555555443
No 4
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=97.97 E-value=7.8e-06 Score=80.26 Aligned_cols=69 Identities=12% Similarity=0.040 Sum_probs=53.2
Q ss_pred HhhcHHHHHHHHHHHhhccchheeeechHHHHH-HhCCCchhH--HHHHHHHHHhhhhhhhhhhhhhhhhhc
Q 008514 357 ALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQ-SLGYDNTHI--FVSMISIWNFLGRVGGGYFSEIIVRDY 425 (563)
Q Consensus 357 ~l~s~~Fwll~~~~~~~~g~gl~~i~n~~~i~~-~~g~~~~~~--~Vsl~si~n~~GRl~~G~lsD~~~~~~ 425 (563)
-+||++||.+.+.+++....--++..-+....+ +.|.++++. ..++..+...++.+.+|+++||++||+
T Consensus 3 ~lkn~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~ 74 (417)
T d1pv7a_ 3 YLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRK 74 (417)
T ss_dssp HHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCT
T ss_pred cccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchH
Confidence 479999999988877664443344444554444 579888764 789999999999999999999999854
No 5
>d2e74f1 f.23.25.1 (F:1-32) PetM subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=9.93 E-value=43 Score=19.64 Aligned_cols=14 Identities=7% Similarity=0.344 Sum_probs=7.4
Q ss_pred hhhhhhchhhhhhh
Q 008514 490 YNFLTLANPAGSIF 503 (563)
Q Consensus 490 yg~~~~a~~vg~~l 503 (563)
||++++++++|.++
T Consensus 13 fglifvgwglgall 26 (32)
T d2e74f1 13 FGLIFVGWGLGVLL 26 (32)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhHHHHHhHHHHHH
Confidence 44555555555544
No 6
>d1v54i_ f.23.3.1 (I:) Mitochondrial cytochrome c oxidase subunit VIc {Cow (Bos taurus) [TaxId: 9913]}
Probab=9.28 E-value=1e+02 Score=22.03 Aligned_cols=35 Identities=9% Similarity=0.121 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHH-HHHHhhhhhhhhhhhhcccc
Q 008514 525 SMIMSGLCIVAVILS-MILVHRTTNVYSHLYGKSRS 559 (563)
Q Consensus 525 f~i~~~~~~~~~~l~-l~l~~R~r~~~~~~~~~~~~ 559 (563)
+.++.++++.+.++. +.+...+|+.|.++|++..+
T Consensus 21 l~~a~~lsl~~a~~~Kf~v~eprKkaYadFYknYDa 56 (73)
T d1v54i_ 21 IVGAFMVSLGFATFYKFAVAEKRKKAYADFYRNYDS 56 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTCCH
T ss_pred HHHHHHHHHHHHHHHHHHhccHhHHHHHHHHHccch
Confidence 334444443333333 44556677799999987643
No 7
>d1e3oc2 a.35.1.1 (C:1-75) Oct-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.97 E-value=85 Score=22.65 Aligned_cols=18 Identities=17% Similarity=0.370 Sum_probs=13.3
Q ss_pred ccHHHHh---hhCCChhhHHH
Q 008514 38 ISPVIKS---SLNYNQKQIAR 55 (563)
Q Consensus 38 ys~~Lk~---~lg~sq~~l~~ 55 (563)
|+..+|+ ++|+||+|+..
T Consensus 12 Fa~~fk~rRi~LG~TQ~dVG~ 32 (75)
T d1e3oc2 12 FAKTFKQRRIKLGFTQGDVGL 32 (75)
T ss_dssp HHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHhccccHHHHHH
Confidence 4455665 49999999876
No 8
>d1au7a2 a.35.1.1 (A:5-76) Pit-1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=6.61 E-value=1.3e+02 Score=21.51 Aligned_cols=18 Identities=22% Similarity=0.423 Sum_probs=13.0
Q ss_pred ccHHHHh---hhCCChhhHHH
Q 008514 38 ISPVIKS---SLNYNQKQIAR 55 (563)
Q Consensus 38 ys~~Lk~---~lg~sq~~l~~ 55 (563)
|+..+|+ ++|+||.|+..
T Consensus 8 Fa~~fk~rRi~LG~TQ~dVG~ 28 (72)
T d1au7a2 8 FANEFKVRRIKLGYTQTNVGE 28 (72)
T ss_dssp HHHHHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHhccCccHHHHHH
Confidence 4455665 49999998875
No 9
>d2ppxa1 a.35.1.3 (A:30-91) Uncharacterized protein Atu1735 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=6.23 E-value=1.2e+02 Score=20.42 Aligned_cols=15 Identities=20% Similarity=0.514 Sum_probs=11.4
Q ss_pred HHHhhhCCChhhHHH
Q 008514 41 VIKSSLNYNQKQIAR 55 (563)
Q Consensus 41 ~Lk~~lg~sq~~l~~ 55 (563)
.+.++.|+||.+++-
T Consensus 6 ~~R~~~gltQ~elA~ 20 (62)
T d2ppxa1 6 IIRRALKLTQEEFSA 20 (62)
T ss_dssp HHHHHTTCCHHHHHH
T ss_pred HHHHHcCCCHHHHHH
Confidence 456678888888875
No 10
>d2auwa1 a.35.1.10 (A:88-154) Hypothetical protein NE0471 C-terminal domain {Nitrosomonas europaea [TaxId: 915]}
Probab=5.17 E-value=1.5e+02 Score=20.62 Aligned_cols=15 Identities=13% Similarity=-0.093 Sum_probs=11.8
Q ss_pred HHHhhhCCChhhHHH
Q 008514 41 VIKSSLNYNQKQIAR 55 (563)
Q Consensus 41 ~Lk~~lg~sq~~l~~ 55 (563)
+++++.|+||.+++-
T Consensus 8 ~~R~~~gltQ~elA~ 22 (67)
T d2auwa1 8 DWMHRNNLSLTTAAE 22 (67)
T ss_dssp HHHHHTTCCHHHHHH
T ss_pred HHHHHcCCCHHHHHH
Confidence 466788999988875
Done!