BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008515
(563 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ZX3|A Chain A, Crystal Structure And Domain Rotation Of Ntpdase1 Cd39
pdb|3ZX3|B Chain B, Crystal Structure And Domain Rotation Of Ntpdase1 Cd39
pdb|3ZX3|C Chain C, Crystal Structure And Domain Rotation Of Ntpdase1 Cd39
pdb|3ZX3|D Chain D, Crystal Structure And Domain Rotation Of Ntpdase1 Cd39
Length = 452
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 96/447 (21%), Positives = 177/447 (39%), Gaps = 66/447 (14%)
Query: 59 YTVVVDCGSTGTRVNVYEWKKRGVESENLPVLVGTYPDNSTKSLLRKSSCQYHCLQTEPG 118
Y +V+D GS+ T + +Y+W +N T + + CQ PG
Sbjct: 35 YGIVLDAGSSHTNLYIYKWPAEK--------------ENDTGVVQQLEECQVK----GPG 76
Query: 119 LDKLVGNASGIRASLEPLILWAEWLVPLERQEETPIFVLATAGLRRLTVE---DARWVLD 175
+ K I A L + + +P +Q +TP+++ ATAG+R L +E A VL
Sbjct: 77 ISKYAQKTDEIAAYLAECMKMSTERIPASKQHQTPVYLGATAGMRLLRMESKQSADEVLA 136
Query: 176 DVEAVVKEHSFMYEKSWIRVLSGKEEAYYGWVALNYKMGSLGNSSITPTXXXXXXXXXXX 235
V +K + F ++ + ++++G+EE YGW+ +NY +G + T
Sbjct: 137 AVSRSLKSYPFDFQGA--KIITGQEEGAYGWITINYLLGRFKTPGGS-TFGALDLGGAST 193
Query: 236 QI--VMEDDGTGNDEHLIRSEIGSIEHRVLAYSLQEFGLNAAFDRAVAMLSQVQMPREGA 293
QI V + E ++ + ++ V +S +G + A + +A +Q+ G
Sbjct: 194 QITFVPLNSTLEAPETSLQFRLYGTDYTVYTHSFLCYGKDQALWQKLAQ--DIQVSSGGI 251
Query: 294 GDRLEIRHPCLSSELLQNYTCNGCVGQNVADRKLSKVKKTAFTSTYLVGEPNWDNCKGIA 353
++ PC + + G R KK F + G +++ C
Sbjct: 252 -----LKDPCFYPGYKKVVNVSELYGTPCTKR---FEKKLPFNQFQVQGTGDYEQCHQSI 303
Query: 354 RAVAINSSNLDWSLPTGDVNCKASLSSSDSRKILNSTAVNHRTERFHALSGFFVV---YN 410
+ NS +C S + N + F A S F+ V +
Sbjct: 304 LKIFNNS------------HCPYSQCA------FNGVFLPPLQGSFGAFSAFYFVMDFFK 345
Query: 411 KLNLSSGANLTRILDRGQQLCSRSWIDLKKA--TGHQNYTGQYCFQVPYMTSLIQEALCL 468
K+ S ++ ++ + + CS+ W ++K + T + Y +YCF Y+ SL+ +
Sbjct: 346 KMANDSVSSQEKMTEITKNFCSKPWEEVKASYPTVKEKYLSEYCFSGTYILSLLLQGYNF 405
Query: 469 GDA---EIIF----GPADLSWTLGAVL 488
+I F ++ WTLG +L
Sbjct: 406 TGTSWDQIHFMGKIKDSNAGWTLGYML 432
>pdb|3ZX0|A Chain A, Ntpdase1 In Complex With Heptamolybdate
pdb|3ZX0|B Chain B, Ntpdase1 In Complex With Heptamolybdate
pdb|3ZX0|C Chain C, Ntpdase1 In Complex With Heptamolybdate
pdb|3ZX0|D Chain D, Ntpdase1 In Complex With Heptamolybdate
pdb|3ZX2|A Chain A, Ntpdase1 In Complex With Decavanadate
pdb|3ZX2|B Chain B, Ntpdase1 In Complex With Decavanadate
pdb|3ZX2|C Chain C, Ntpdase1 In Complex With Decavanadate
pdb|3ZX2|D Chain D, Ntpdase1 In Complex With Decavanadate
Length = 452
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 96/447 (21%), Positives = 177/447 (39%), Gaps = 66/447 (14%)
Query: 59 YTVVVDCGSTGTRVNVYEWKKRGVESENLPVLVGTYPDNSTKSLLRKSSCQYHCLQTEPG 118
Y +V+D GS+ T + +Y+W +N T + + CQ PG
Sbjct: 35 YGIVLDAGSSHTNLYIYKWPAEK--------------ENDTGVVQQLEECQVK----GPG 76
Query: 119 LDKLVGNASGIRASLEPLILWAEWLVPLERQEETPIFVLATAGLRRLTVE---DARWVLD 175
+ K I A L + + +P +Q +TP+++ ATAG+R L +E A VL
Sbjct: 77 ISKYAQKTDEIAAYLAECMKMSTERIPASKQHQTPVYLGATAGMRLLRMESKQSADEVLA 136
Query: 176 DVEAVVKEHSFMYEKSWIRVLSGKEEAYYGWVALNYKMGSLGNSSITPTXXXXXXXXXXX 235
V +K + F ++ + ++++G+EE YGW+ +NY +G + T
Sbjct: 137 AVSRSLKSYPFDFQGA--KIITGQEEGAYGWITINYLLGRFKTPGGS-TFGALDLGGSST 193
Query: 236 QI--VMEDDGTGNDEHLIRSEIGSIEHRVLAYSLQEFGLNAAFDRAVAMLSQVQMPREGA 293
QI V + E ++ + ++ V +S +G + A + +A +Q+ G
Sbjct: 194 QITFVPLNSTLEAPETSLQFRLYGTDYTVYTHSFLCYGKDQALWQKLAQ--DIQVSSGGI 251
Query: 294 GDRLEIRHPCLSSELLQNYTCNGCVGQNVADRKLSKVKKTAFTSTYLVGEPNWDNCKGIA 353
++ PC + + G R KK F + G +++ C
Sbjct: 252 -----LKDPCFYPGYKKVVNVSELYGTPCTKR---FEKKLPFNQFQVQGTGDYEQCHQSI 303
Query: 354 RAVAINSSNLDWSLPTGDVNCKASLSSSDSRKILNSTAVNHRTERFHALSGFFVV---YN 410
+ NS +C S + N + F A S F+ V +
Sbjct: 304 LKIFNNS------------HCPYSQCA------FNGVFLPPLQGSFGAFSAFYFVMDFFK 345
Query: 411 KLNLSSGANLTRILDRGQQLCSRSWIDLKKA--TGHQNYTGQYCFQVPYMTSLIQEALCL 468
K+ S ++ ++ + + CS+ W ++K + T + Y +YCF Y+ SL+ +
Sbjct: 346 KMANDSVSSQEKMTEITKNFCSKPWEEVKASYPTVKEKYLSEYCFSGTYILSLLLQGYNF 405
Query: 469 GDA---EIIF----GPADLSWTLGAVL 488
+I F ++ WTLG +L
Sbjct: 406 TGTSWDQIHFMGKIKDSNAGWTLGYML 432
>pdb|3CJ1|A Chain A, Structure Of Rattus Norvegicus Ntpdase2
pdb|3CJ7|A Chain A, Structure Of Rattus Norvegicus Ntpdase2 In Complex With
Amp
pdb|3CJ9|A Chain A, Structure Of Rattus Norvegicus Ntpdase2 In Complex With
Calcium, Amp And Phosphate
pdb|3CJA|A Chain A, Structure Of Rattus Norvegicus Ntpdase2 In Complex With
Calcium And Amppnp
Length = 456
Score = 65.1 bits (157), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 113/467 (24%), Positives = 182/467 (38%), Gaps = 101/467 (21%)
Query: 59 YTVVVDCGSTGTRVNVYEWKKRGVESENLPVLVGTYPDNSTKSLLRKSSCQYHCLQTEPG 118
Y +V+D GS+ T + VY+W + EN +VG + SSC G
Sbjct: 35 YGIVLDAGSSHTSMFVYKWP---ADKENDTGIVGQH-----------SSCDVQ----GGG 76
Query: 119 LDKLVGNASGIRASLEPLILWAEWLVPLERQEETPIFVLATAGLRRLTV---EDARWVLD 175
+ + S SL + A VP +R TP+++ ATAG+R L + E VL+
Sbjct: 77 ISSYANDPSKAGQSLVRCLEQALRDVPRDRHASTPLYLGATAGMRLLNLTSPEATARVLE 136
Query: 176 DVEAVVKEHSFMYEKSWIRVLSGKEEAYYGWVALNY------KMGSLGNSSITP---TXX 226
V + ++ F + + R+LSG++E +GWV NY K G +G I P T
Sbjct: 137 AVTQTLTQYPFDFRGA--RILSGQDEGVFGWVTANYLLENFIKYGWVGR-WIRPRKGTLG 193
Query: 227 XXXXXXXXXQIVME----DDGTGNDEHLIRSEIGSIEHRVLAYSLQEFGLNAAFDRAVAM 282
QI E + GN+ HL + +RV +S +G + R +A
Sbjct: 194 AMDLGGASTQITFETTSPSEDPGNEVHL---RLYGQHYRVYTHSFLCYGRDQILLRLLA- 249
Query: 283 LSQVQMPREGAGDRLEIRHPCL-----SSELLQNYTCNGC-VGQNVADRKLSKVKKTAFT 336
S +Q+ R HPC + LLQ + C +GQ + AF
Sbjct: 250 -SALQIHR---------FHPCWPKGYSTQVLLQEVYQSPCTMGQ----------RPRAFN 289
Query: 337 STYLV---GEPNWDNCKG-IARAVAINSSNLDWSLPTGDVNCKASLSSSDSRKILNSTAV 392
+ +V G N C+ ++R I+S C S S N
Sbjct: 290 GSAIVSLSGTSNATLCRDLVSRLFNISS-------------CPFSQCS------FNGVFQ 330
Query: 393 NHRTERFHALSGFFVVYNKLNLSSG---ANLTRILDRGQQLCSRSWIDLK-KATGHQNYT 448
F A S F+ + L G L ++ + + C+++W +L+ + G +
Sbjct: 331 PPVAGNFIAFSAFYYTVDFLTTVMGLPVGTLKQLEEATEITCNQTWTELQARVPGQKTRL 390
Query: 449 GQYCFQVPYMTSLIQEALCLGD---AEIIF--GPAD--LSWTLGAVL 488
YC ++ L+ + E++F AD + W LG +L
Sbjct: 391 ADYCAVAMFIHQLLSRGYHFDERSFREVVFQKKAADTAVGWALGYML 437
>pdb|3AAP|A Chain A, Crystal Structure Of Lp1ntpdase From Legionella
Pneumophila
pdb|3AAQ|A Chain A, Crystal Structure Of Lp1ntpdase From Legionella
Pneumophila In Complex With The Inhibitor Arl 67156
pdb|3AAR|A Chain A, Crystal Structure Of Lp1ntpdase From Legionella
Pneumophila In Complex With Amppnp
Length = 353
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 75/155 (48%), Gaps = 27/155 (17%)
Query: 62 VVDCGSTGTRVNVYEWKKRGVESENLPVLVGTYPDNSTKSLLRKSSCQYHCLQTEPGLDK 121
V+D GSTG+R+++Y + + N P+ + + + K + +PG
Sbjct: 7 VIDAGSTGSRLHIYSYD---TDDTNTPIHI--------EEIWNK--------KIKPGFAS 47
Query: 122 LVGNASGIRASLEPLILWAEWLVPLERQEETPIFVLATAGLRRLTVEDARWVLDDVEAVV 181
+ N+ I A L L+ A P+ P++ ATAG+R L + D++E
Sbjct: 48 IQPNSVTIDAYLTMLLADA----PIHN---IPVYFYATAGMRLLPQSQQKKYYDELEYWF 100
Query: 182 KEHSFMYEKSWIRVLSGKEEAYYGWVALNYKMGSL 216
++ S ++ + ++G +EA + W+A+NYK+ +L
Sbjct: 101 RQQS-QWQLVEAKTITGNDEALFDWLAVNYKLDTL 134
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 65/148 (43%), Gaps = 28/148 (18%)
Query: 364 DWSLPTGDV------NCKASLSSSDSRKILNST-AVNHRTERFHALSG---FFVVYNKLN 413
D+ LP G+ +CK ++S ++NS VN + + AL+ ++ + N
Sbjct: 208 DYPLPDGESGQGNAPSCKEEVTS-----LMNSVHKVNQQIQPLLALNPVNEWYSIGGISN 262
Query: 414 LSS-------GANLTR--ILDRG-QQLCSRSWIDLKKATGHQNYTGQYCFQVPYMTSLIQ 463
L+S + LT +L +G Q+C + W L Y QYC Y +L+
Sbjct: 263 LASSQLFHFENSELTNQSLLQQGDNQICHQQWDILNGQYPDDEYLYQYCLLSSYYYALMV 322
Query: 464 EALCLGDAEII-FGPAD--LSWTLGAVL 488
+ + + I + P + L WT+G VL
Sbjct: 323 DGYGINPNQTIHYIPPEQNLDWTIGVVL 350
>pdb|4F0V|A Chain A, Crystal Structure Of Type Effector Tse1 From Pseudomonas
Aeruginousa
Length = 188
Score = 35.4 bits (80), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 324 DRKLSKVKKTAFTSTYLVGEPNWDNCKGIARAVAINSSNLDWSLPTGDVNCKA-SLSSSD 382
D+ + K ++ +YL G PN DNC G ++VA + L +P G+ N L S
Sbjct: 39 DQCIVNACKNSWDKSYLAGTPNKDNCSGFVQSVA---AELGVPMPRGNANAMVDGLEQSW 95
Query: 383 SRKILNSTAVNHRTERFHALSGF 405
++ + A + F ++G
Sbjct: 96 TKLASGAEAAQKAAQGFLVIAGL 118
>pdb|4EOB|A Chain A, Structure Of The Type Vi Peptidoglycan Amidase Effector
Tse1 From Pseudomonas Aeruginosa
pdb|4EOB|B Chain B, Structure Of The Type Vi Peptidoglycan Amidase Effector
Tse1 From Pseudomonas Aeruginosa
pdb|4EOB|C Chain C, Structure Of The Type Vi Peptidoglycan Amidase Effector
Tse1 From Pseudomonas Aeruginosa
pdb|4EOB|D Chain D, Structure Of The Type Vi Peptidoglycan Amidase Effector
Tse1 From Pseudomonas Aeruginosa
Length = 162
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 324 DRKLSKVKKTAFTSTYLVGEPNWDNCKGIARAVAINSSNLDWSLPTGDVNCKA-SLSSSD 382
D+ + K ++ +YL G PN DNC G ++VA + L +P G+ N L S
Sbjct: 5 DQCIVNACKNSWDKSYLAGTPNKDNCSGFVQSVA---AELGVPMPRGNANAMVDGLEQSW 61
Query: 383 SRKILNSTAVNHRTERFHALSGF 405
++ + A + F ++G
Sbjct: 62 TKLASGAEAAQKAAQGFLVIAGL 84
>pdb|3VPJ|A Chain A, Crystal Structure Of Type Vi Effector Tse1 From
Pseudomonas Aeruginosa In Complex With Immune Protein
Tsi1
pdb|3VPJ|B Chain B, Crystal Structure Of Type Vi Effector Tse1 From
Pseudomonas Aeruginosa In Complex With Immune Protein
Tsi1
pdb|3VPJ|C Chain C, Crystal Structure Of Type Vi Effector Tse1 From
Pseudomonas Aeruginosa In Complex With Immune Protein
Tsi1
pdb|3VPJ|D Chain D, Crystal Structure Of Type Vi Effector Tse1 From
Pseudomonas Aeruginosa In Complex With Immune Protein
Tsi1
Length = 174
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 324 DRKLSKVKKTAFTSTYLVGEPNWDNCKGIARAVAINSSNLDWSLPTGDVNCKA-SLSSSD 382
D+ + K ++ +YL G PN DNC G ++VA + L +P G+ N L S
Sbjct: 25 DQCIVNACKNSWDKSYLAGTPNKDNCSGFVQSVA---AELGVPMPRGNANAMVDGLEQSW 81
Query: 383 SRKILNSTAVNHRTERFHALSGF 405
++ + A + F ++G
Sbjct: 82 TKLASGAEAAQKAAQGFLVIAGL 104
>pdb|3NSG|A Chain A, Crystal Structure Of Ompf, An Outer Membrane Protein From
Salmonella Typhi
pdb|3NSG|B Chain B, Crystal Structure Of Ompf, An Outer Membrane Protein From
Salmonella Typhi
pdb|3NSG|C Chain C, Crystal Structure Of Ompf, An Outer Membrane Protein From
Salmonella Typhi
Length = 341
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 243 GTGNDEHLIRSEIGSIEHRVLAYSLQEFGLNAAFDRAVAMLSQVQMPREGAGDRLEIR 300
G D H I S+ G AY FG+ AA+ + + + Q R+G GDR E R
Sbjct: 157 GKNQDNHSINSQNGDGVGYTXAYEFDGFGVTAAY--SNSKRTNDQQDRDGNGDRAESR 212
>pdb|4FGE|A Chain A, Structure Of The Effector Protein Tse1 From Pseudomonas
Aeruginosa
pdb|4FGE|B Chain B, Structure Of The Effector Protein Tse1 From Pseudomonas
Aeruginosa
pdb|4FGE|C Chain C, Structure Of The Effector Protein Tse1 From Pseudomonas
Aeruginosa
pdb|4FGE|D Chain D, Structure Of The Effector Protein Tse1 From Pseudomonas
Aeruginosa
Length = 165
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 324 DRKLSKVKKTAFTSTYLVGEPNWDNCKGIARAVAINSSNLDWSLPTGDVNCKA-SLSSSD 382
D+ + K ++ +YL G PN DNC G ++VA + L +P G+ N L S
Sbjct: 5 DQCIVNACKNSWDKSYLAGTPNKDNCSGFVQSVA---AELGVPMPRGNANAMVDGLEQSW 61
Query: 383 SRKILNSTAVNHRTERFHALSGF 405
++ + A + F ++G
Sbjct: 62 TKLASGAEAAQKAAQGFLVIAGL 84
>pdb|4EQA|A Chain A, Crystal Structure Of Pa1844 In Complex With Pa1845 From
Pseudomonas Aeruginosa Pao1
pdb|4EQA|B Chain B, Crystal Structure Of Pa1844 In Complex With Pa1845 From
Pseudomonas Aeruginosa Pao1
Length = 146
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Query: 332 KTAFTSTYLVGEPNWDNCKGIARAVAINSSNLDWSLPTGDVNCKA-SLSSSDSRKILNST 390
K ++ +YL G PN DNC G ++VA + L +P G+ N L S ++ +
Sbjct: 11 KNSWDKSYLAGTPNKDNCSGFVQSVA---AELGVPMPRGNANAMVDGLEQSWTKLASGAE 67
Query: 391 AVNHRTERFHALSGF 405
A + F ++G
Sbjct: 68 AAQKAAQGFLVIAGL 82
>pdb|3AGR|A Chain A, Crystal Structure Of Nucleoside Triphosphate Hydrolases
From Neospora Caninum
pdb|3AGR|B Chain B, Crystal Structure Of Nucleoside Triphosphate Hydrolases
From Neospora Caninum
Length = 602
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 14/76 (18%)
Query: 152 TPIFVLATAGLRRLTVEDARWVLDDVEAVVK----------EHSFMYEKSWIRVLSGKEE 201
P+ + +TAG+R W + + +++ + F W R ++G EE
Sbjct: 157 VPVLLCSTAGVRDFH----DWYREALFVILRFLINHPKPGHGYKFFTNPEWTRPITGAEE 212
Query: 202 AYYGWVALNYKMGSLG 217
Y ++ALN+ G LG
Sbjct: 213 GLYAFLALNHLSGRLG 228
>pdb|4EQ8|A Chain A, Crystal Structure Of Pa1844 From Pseudomonas Aeruginosa
Pao1
Length = 162
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Query: 324 DRKLSKVKKTAFTSTYLVGEPNWDNCKGIARAVAINSSNLDWSLPTGDVNCKA-SLSSSD 382
D+ + K ++ +YL G PN DNC G ++VA + L P G+ N L S
Sbjct: 5 DQCIVNACKNSWDKSYLAGTPNKDNCSGFVQSVA---AELGVPXPRGNANAXVDGLEQSW 61
Query: 383 SRKILNSTAVNHRTERFHALSGF 405
++ + A + F ++G
Sbjct: 62 TKLASGAEAAQKAAQGFLVIAGL 84
>pdb|3VPI|A Chain A, Crystal Structure Of Type Vi Effector Tse1 From
Pseudomonas Aeruginosa
Length = 174
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Query: 324 DRKLSKVKKTAFTSTYLVGEPNWDNCKGIARAVAINSSNLDWSLPTGDVNCKA-SLSSSD 382
D+ + K ++ +YL G PN DNC G ++VA + L P G+ N L S
Sbjct: 25 DQCIVNACKNSWDKSYLAGTPNKDNCSGFVQSVA---AELGVPXPRGNANAXVDGLEQSW 81
Query: 383 SRKILNSTAVNHRTERFHALSGF 405
++ + A + F ++G
Sbjct: 82 TKLASGAEAAQKAAQGFLVIAGL 104
>pdb|4FGD|A Chain A, Structure Of The Effector Protein Tse1 From Pseudomonas
Aeruginosa, Selenomethionine Variant
pdb|4FGD|B Chain B, Structure Of The Effector Protein Tse1 From Pseudomonas
Aeruginosa, Selenomethionine Variant
pdb|4FGD|C Chain C, Structure Of The Effector Protein Tse1 From Pseudomonas
Aeruginosa, Selenomethionine Variant
pdb|4FGD|D Chain D, Structure Of The Effector Protein Tse1 From Pseudomonas
Aeruginosa, Selenomethionine Variant
pdb|4FGI|A Chain A, Structure Of The Effector - Immunity System Tse1 TSI1
FROM Pseudomonas Aeruginosa
pdb|4FGI|C Chain C, Structure Of The Effector - Immunity System Tse1 TSI1
FROM Pseudomonas Aeruginosa
pdb|4FGI|E Chain E, Structure Of The Effector - Immunity System Tse1 TSI1
FROM Pseudomonas Aeruginosa
pdb|4FGI|G Chain G, Structure Of The Effector - Immunity System Tse1 TSI1
FROM Pseudomonas Aeruginosa
Length = 165
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Query: 324 DRKLSKVKKTAFTSTYLVGEPNWDNCKGIARAVAINSSNLDWSLPTGDVNCKA-SLSSSD 382
D+ + K ++ +YL G PN DNC G ++VA + L P G+ N L S
Sbjct: 5 DQCIVNACKNSWDKSYLAGTPNKDNCSGFVQSVA---AELGVPXPRGNANAXVDGLEQSW 61
Query: 383 SRKILNSTAVNHRTERFHALSGF 405
++ + A + F ++G
Sbjct: 62 TKLASGAEAAQKAAQGFLVIAGL 84
>pdb|4F0W|A Chain A, Crystal Structure Of Type Effector Tse1 C30a Mutant From
Pseudomonas Aeruginousa
Length = 188
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Query: 324 DRKLSKVKKTAFTSTYLVGEPNWDNCKGIARAVAINSSNLDWSLPTGDVNCKA-SLSSSD 382
D+ + K ++ +YL G PN DN G ++VA + L +P G+ N L S
Sbjct: 39 DQCIVNACKNSWDKSYLAGTPNKDNASGFVQSVA---AELGVPMPRGNANAMVDGLEQSW 95
Query: 383 SRKILNSTAVNHRTERFHALSGF 405
++ + A + F ++G
Sbjct: 96 TKLASGAEAAQKAAQGFLVIAGL 118
>pdb|4F4M|A Chain A, Structure Of The Type Vi Peptidoglycan Amidase Effector
Tse1 (C30a) From Pseudomonas Aeruginosa
pdb|4F4M|B Chain B, Structure Of The Type Vi Peptidoglycan Amidase Effector
Tse1 (C30a) From Pseudomonas Aeruginosa
pdb|4F4M|C Chain C, Structure Of The Type Vi Peptidoglycan Amidase Effector
Tse1 (C30a) From Pseudomonas Aeruginosa
pdb|4F4M|D Chain D, Structure Of The Type Vi Peptidoglycan Amidase Effector
Tse1 (C30a) From Pseudomonas Aeruginosa
Length = 160
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Query: 324 DRKLSKVKKTAFTSTYLVGEPNWDNCKGIARAVAINSSNLDWSLPTGDVNCKA-SLSSSD 382
D+ + K ++ +YL G PN DN G ++VA + L +P G+ N L S
Sbjct: 5 DQCIVNACKNSWDKSYLAGTPNKDNASGFVQSVA---AELGVPMPRGNANAMVDGLEQSW 61
Query: 383 SRKILNSTAVNHRTERFHALSGF 405
++ + A + F ++G
Sbjct: 62 TKLASGAEAAQKAAQGFLVIAGL 84
>pdb|4A57|A Chain A, Crystal Structure Of Toxoplasma Gondii Nucleoside
Triphosphate Diphosphohydrolase 3 (Ntpdase3)
pdb|4A57|B Chain B, Crystal Structure Of Toxoplasma Gondii Nucleoside
Triphosphate Diphosphohydrolase 3 (Ntpdase3)
pdb|4A57|C Chain C, Crystal Structure Of Toxoplasma Gondii Nucleoside
Triphosphate Diphosphohydrolase 3 (Ntpdase3)
pdb|4A57|D Chain D, Crystal Structure Of Toxoplasma Gondii Nucleoside
Triphosphate Diphosphohydrolase 3 (Ntpdase3)
pdb|4A59|A Chain A, Crystal Structure Of Toxoplasma Gondii Nucleoside
Triphosphate Diphosphohydrolase 3 (Ntpdase3) In Complex
With Amp
pdb|4A59|B Chain B, Crystal Structure Of Toxoplasma Gondii Nucleoside
Triphosphate Diphosphohydrolase 3 (Ntpdase3) In Complex
With Amp
pdb|4A59|C Chain C, Crystal Structure Of Toxoplasma Gondii Nucleoside
Triphosphate Diphosphohydrolase 3 (Ntpdase3) In Complex
With Amp
pdb|4A59|D Chain D, Crystal Structure Of Toxoplasma Gondii Nucleoside
Triphosphate Diphosphohydrolase 3 (Ntpdase3) In Complex
With Amp
Length = 611
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
Query: 153 PIFVLATAGLRRLT--VEDARWVL----DDVEAVVKEHSFMYEKSWIRVLSGKEEAYYGW 206
P+ + +TAG+R DA +VL + + + F W R ++G EE + +
Sbjct: 158 PVMLCSTAGVRDFHEWYRDALFVLLRHLINNPSPAHGYKFFTNPFWTRPITGAEEGLFAF 217
Query: 207 VALNYKMGSLG 217
+ LN+ LG
Sbjct: 218 ITLNHLSRRLG 228
>pdb|4A5A|A Chain A, Crystal Structure Of The C258sC268S VARIANT OF TOXOPLASMA
GONDII Nucleoside Triphosphate Diphosphohydrolase 3
(Ntpdase3) In Complex With Magnesium And Amppnp
pdb|4A5A|B Chain B, Crystal Structure Of The C258sC268S VARIANT OF TOXOPLASMA
GONDII Nucleoside Triphosphate Diphosphohydrolase 3
(Ntpdase3) In Complex With Magnesium And Amppnp
pdb|4A5A|C Chain C, Crystal Structure Of The C258sC268S VARIANT OF TOXOPLASMA
GONDII Nucleoside Triphosphate Diphosphohydrolase 3
(Ntpdase3) In Complex With Magnesium And Amppnp
pdb|4A5A|D Chain D, Crystal Structure Of The C258sC268S VARIANT OF TOXOPLASMA
GONDII Nucleoside Triphosphate Diphosphohydrolase 3
(Ntpdase3) In Complex With Magnesium And Amppnp
Length = 611
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
Query: 153 PIFVLATAGLRRLT--VEDARWVL----DDVEAVVKEHSFMYEKSWIRVLSGKEEAYYGW 206
P+ + +TAG+R DA +VL + + + F W R ++G EE + +
Sbjct: 158 PVMLCSTAGVRDFHEWYRDALFVLLRHLINNPSPAHGYKFFTNPFWTRPITGAEEGLFAF 217
Query: 207 VALNYKMGSLG 217
+ LN+ LG
Sbjct: 218 ITLNHLSRRLG 228
>pdb|4A5B|A Chain A, Crystal Structure Of The C258sC268S VARIANT OF TOXOPLASMA
GONDII Nucleoside Triphosphate Diphosphohydrolase 1
(Ntpdase1)
pdb|4A5B|B Chain B, Crystal Structure Of The C258sC268S VARIANT OF TOXOPLASMA
GONDII Nucleoside Triphosphate Diphosphohydrolase 1
(Ntpdase1)
Length = 611
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
Query: 153 PIFVLATAGLRRLT--VEDARWVL----DDVEAVVKEHSFMYEKSWIRVLSGKEEAYYGW 206
P+ + +TAG+R DA +VL + + + F W R ++G EE + +
Sbjct: 158 PVMLCSTAGVRDFHEWYRDALFVLLRHLINNPSPAHGYKFFTNPFWTRPITGAEEGLFAF 217
Query: 207 VALNYKMGSLG 217
+ LN+ LG
Sbjct: 218 ITLNHLSRRLG 228
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,850,777
Number of Sequences: 62578
Number of extensions: 603688
Number of successful extensions: 1278
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1251
Number of HSP's gapped (non-prelim): 25
length of query: 563
length of database: 14,973,337
effective HSP length: 104
effective length of query: 459
effective length of database: 8,465,225
effective search space: 3885538275
effective search space used: 3885538275
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)