Query 008515
Match_columns 563
No_of_seqs 296 out of 1613
Neff 6.6
Searched_HMMs 46136
Date Thu Mar 28 13:08:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008515.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008515hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1386 Nucleoside phosphatase 100.0 7.9E-99 2E-103 790.4 31.8 404 55-500 6-435 (501)
2 PF01150 GDA1_CD39: GDA1/CD39 100.0 2.4E-85 5.2E-90 710.2 -0.9 396 56-500 6-430 (434)
3 KOG1385 Nucleoside phosphatase 100.0 5.3E-79 1.2E-83 627.5 25.9 361 56-493 65-446 (453)
4 COG5371 Golgi nucleoside dipho 100.0 5.2E-42 1.1E-46 356.3 12.0 386 57-489 119-533 (549)
5 COG5371 Golgi nucleoside dipho 100.0 1.7E-38 3.7E-43 330.2 1.1 389 57-495 3-437 (549)
6 TIGR03706 exo_poly_only exopol 99.7 2.1E-17 4.5E-22 171.4 15.8 155 61-258 3-158 (300)
7 COG0248 GppA Exopolyphosphatas 99.7 1E-16 2.2E-21 175.1 16.6 158 61-260 6-164 (492)
8 PRK11031 guanosine pentaphosph 99.7 3E-16 6.5E-21 173.1 16.1 159 58-258 6-165 (496)
9 PRK10854 exopolyphosphatase; P 99.7 4.8E-16 1.1E-20 172.2 15.3 160 58-259 11-171 (513)
10 PF02541 Ppx-GppA: Ppx/GppA ph 99.4 1.5E-12 3.3E-17 133.9 11.0 110 114-242 21-131 (285)
11 PRK15080 ethanolamine utilizat 97.1 0.0041 9E-08 63.7 11.3 131 56-242 22-154 (267)
12 PRK09472 ftsA cell division pr 91.1 2.8 6.1E-05 45.8 12.7 63 58-143 8-71 (420)
13 smart00268 ACTIN Actin. ACTIN 88.9 4.3 9.3E-05 43.2 11.8 93 124-244 72-164 (373)
14 cd00012 ACTIN Actin; An ubiqui 88.8 5.2 0.00011 42.6 12.3 105 125-257 73-177 (371)
15 PRK13929 rod-share determining 87.9 12 0.00025 39.6 14.2 97 124-241 72-168 (335)
16 PRK13927 rod shape-determining 87.7 3.6 7.7E-05 43.2 10.1 93 125-241 74-166 (334)
17 TIGR01174 ftsA cell division p 87.4 10 0.00022 40.5 13.6 62 61-145 3-65 (371)
18 TIGR02529 EutJ ethanolamine ut 86.9 3.7 8E-05 41.4 9.3 91 124-242 37-127 (239)
19 PRK10719 eutA reactivating fac 85.6 4.7 0.0001 44.6 9.7 160 58-244 6-167 (475)
20 PRK13930 rod shape-determining 84.8 10 0.00022 39.7 11.8 95 125-242 77-171 (335)
21 PTZ00281 actin; Provisional 83.2 21 0.00046 38.3 13.6 35 223-257 149-183 (376)
22 PF00022 Actin: Actin; InterP 83.0 9.6 0.00021 40.7 10.8 93 124-244 71-163 (393)
23 COG0849 ftsA Cell division ATP 81.8 5.7 0.00012 43.5 8.5 63 59-144 7-70 (418)
24 CHL00094 dnaK heat shock prote 81.1 33 0.00071 39.6 14.8 94 125-241 111-205 (621)
25 PF06277 EutA: Ethanolamine ut 80.8 22 0.00047 39.5 12.4 159 59-244 4-164 (473)
26 PRK13411 molecular chaperone D 80.2 45 0.00098 38.7 15.7 95 125-241 109-204 (653)
27 PTZ00466 actin-like protein; P 80.2 27 0.00059 37.7 13.0 70 151-244 106-175 (380)
28 PRK13410 molecular chaperone D 78.7 31 0.00067 40.2 13.7 94 125-241 111-205 (668)
29 TIGR02350 prok_dnaK chaperone 78.5 48 0.001 37.9 15.0 95 125-241 106-201 (595)
30 PF00370 FGGY_N: FGGY family o 78.2 6.1 0.00013 39.4 6.9 63 59-144 1-63 (245)
31 PTZ00004 actin-2; Provisional 77.0 38 0.00083 36.4 13.0 71 150-244 100-170 (378)
32 PRK05183 hscA chaperone protei 76.4 58 0.0013 37.6 14.9 94 125-241 125-219 (616)
33 PRK00290 dnaK molecular chaper 75.2 64 0.0014 37.2 14.9 94 125-241 109-203 (627)
34 PTZ00280 Actin-related protein 75.2 54 0.0012 35.6 13.7 103 124-244 79-181 (414)
35 PTZ00452 actin; Provisional 74.2 52 0.0011 35.4 13.1 83 151-257 100-182 (375)
36 TIGR00241 CoA_E_activ CoA-subs 74.0 8.5 0.00018 38.8 6.6 18 59-76 1-18 (248)
37 TIGR00904 mreB cell shape dete 74.0 41 0.0009 35.3 12.1 95 124-241 74-168 (333)
38 PF00012 HSP70: Hsp70 protein; 73.3 50 0.0011 37.4 13.4 125 125-284 111-237 (602)
39 PLN03184 chloroplast Hsp70; Pr 71.4 67 0.0015 37.5 14.0 94 125-241 148-242 (673)
40 PTZ00009 heat shock 70 kDa pro 70.7 99 0.0022 35.9 15.2 96 125-241 116-212 (653)
41 PTZ00400 DnaK-type molecular c 70.4 62 0.0013 37.7 13.4 94 125-241 150-244 (663)
42 TIGR01991 HscA Fe-S protein as 69.8 83 0.0018 36.2 14.1 94 125-241 105-199 (599)
43 KOG2517 Ribulose kinase and re 66.8 14 0.0003 41.5 6.7 85 58-164 6-90 (516)
44 KOG0679 Actin-related protein 65.8 54 0.0012 35.5 10.5 57 166-243 118-174 (426)
45 PTZ00186 heat shock 70 kDa pre 62.6 1.1E+02 0.0023 35.8 13.2 94 125-241 136-230 (657)
46 PF08841 DDR: Diol dehydratase 60.4 11 0.00023 39.2 4.0 56 170-241 97-152 (332)
47 PRK01433 hscA chaperone protei 55.0 2E+02 0.0043 33.1 13.7 94 125-241 117-211 (595)
48 PF06723 MreB_Mbl: MreB/Mbl pr 49.9 56 0.0012 34.7 7.6 94 125-241 70-163 (326)
49 TIGR01175 pilM type IV pilus a 45.7 67 0.0014 33.7 7.5 66 170-243 141-208 (348)
50 PRK11678 putative chaperone; P 44.9 1.5E+02 0.0034 32.8 10.4 131 126-279 126-259 (450)
51 PF14450 FtsA: Cell division p 42.8 26 0.00056 31.2 3.3 61 60-143 1-62 (120)
52 PLN02295 glycerol kinase 42.6 53 0.0011 36.8 6.4 19 59-77 1-19 (512)
53 COG0443 DnaK Molecular chapero 41.4 2.7E+02 0.0059 32.0 12.0 127 125-286 96-223 (579)
54 TIGR03123 one_C_unchar_1 proba 39.9 1.5E+02 0.0032 31.5 8.8 86 152-243 53-148 (318)
55 PF11104 PilM_2: Type IV pilus 38.7 74 0.0016 33.6 6.5 67 170-243 134-200 (340)
56 PRK10331 L-fuculokinase; Provi 37.9 77 0.0017 35.0 6.7 19 59-77 3-21 (470)
57 PF12273 RCR: Chitin synthesis 36.2 23 0.0005 32.2 1.9 16 22-37 1-16 (130)
58 COG4820 EutJ Ethanolamine util 35.6 60 0.0013 32.3 4.7 29 208-243 132-160 (277)
59 PRK13928 rod shape-determining 34.0 1.9E+02 0.0042 30.2 8.8 96 124-242 71-166 (336)
60 PF01869 BcrAD_BadFG: BadF/Bad 33.4 65 0.0014 32.6 4.9 17 61-77 1-17 (271)
61 PRK10939 autoinducer-2 (AI-2) 33.4 96 0.0021 34.8 6.7 20 58-77 3-22 (520)
62 COG2971 Predicted N-acetylgluc 33.0 84 0.0018 33.0 5.5 55 57-141 4-59 (301)
63 PTZ00294 glycerol kinase-like 32.1 90 0.002 34.9 6.1 19 59-77 3-21 (504)
64 TIGR02628 fuculo_kin_coli L-fu 31.2 1.1E+02 0.0025 33.7 6.7 19 59-77 2-20 (465)
65 smart00842 FtsA Cell division 30.8 1.8E+02 0.004 27.7 7.3 62 61-145 2-64 (187)
66 PRK15027 xylulokinase; Provisi 30.3 1.3E+02 0.0028 33.4 6.9 62 60-144 2-63 (484)
67 KOG0104 Molecular chaperones G 29.4 1.4E+02 0.003 35.2 6.9 75 205-285 196-275 (902)
68 COG4819 EutA Ethanolamine util 28.1 2.9E+02 0.0064 29.6 8.5 156 59-244 6-166 (473)
69 PRK09213 pur operon repressor; 27.9 90 0.002 32.3 4.8 68 118-185 25-95 (271)
70 PF15102 TMEM154: TMEM154 prot 25.7 49 0.0011 31.0 2.2 30 513-544 60-89 (146)
71 TIGR01314 gntK_FGGY gluconate 25.3 1.2E+02 0.0025 34.0 5.5 19 59-77 1-19 (505)
72 COG4972 PilM Tfp pilus assembl 25.0 1.6E+02 0.0034 31.5 5.9 66 172-244 149-214 (354)
73 COG1070 XylB Sugar (pentulose 24.7 62 0.0013 36.2 3.2 22 57-78 3-24 (502)
74 TIGR01311 glycerol_kin glycero 23.9 1.5E+02 0.0034 32.9 6.1 19 59-77 2-20 (493)
75 TIGR01234 L-ribulokinase L-rib 23.1 69 0.0015 36.1 3.2 19 59-77 2-20 (536)
76 PF13941 MutL: MutL protein 23.0 1.7E+02 0.0038 32.6 6.1 17 61-77 3-19 (457)
77 PTZ00288 glucokinase 1; Provis 22.9 3.5E+02 0.0076 29.6 8.4 24 56-79 24-47 (405)
78 PF09680 Tiny_TM_bacill: Prote 22.8 65 0.0014 20.9 1.6 17 517-533 5-21 (24)
79 PF05399 EVI2A: Ectropic viral 21.4 1.3E+02 0.0028 30.0 4.2 25 17-41 122-146 (227)
80 COG5277 Actin and related prot 21.3 9E+02 0.019 26.9 11.3 85 155-259 108-192 (444)
81 PF08777 RRM_3: RNA binding mo 21.0 50 0.0011 29.0 1.2 42 162-204 42-85 (105)
82 PRK04123 ribulokinase; Provisi 21.0 81 0.0018 35.6 3.2 20 58-77 3-22 (548)
No 1
>KOG1386 consensus Nucleoside phosphatase [Nucleotide transport and metabolism]
Probab=100.00 E-value=7.9e-99 Score=790.42 Aligned_cols=404 Identities=29% Similarity=0.534 Sum_probs=341.5
Q ss_pred CCceEEEEEEeccCceEEEEEEEecCCccCCCccccccccCCCCccchhccccccccccccccchhccCCCHHHHHHHHH
Q 008515 55 SGSYYTVVVDCGSTGTRVNVYEWKKRGVESENLPVLVGTYPDNSTKSLLRKSSCQYHCLQTEPGLDKLVGNASGIRASLE 134 (563)
Q Consensus 55 ~~~~Y~vVIDaGSsgtRl~Vy~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~pGLss~~~~p~~~~~~l~ 134 (563)
+..+|+|||||||||||||||.|.... + .|. . +.+.+ .+.+++++||||+|+++|+++..+|+
T Consensus 6 ~~~kYgiviDaGSSgTrl~Vy~w~~~~---g-~~~-~--------~i~~~----~~~~~k~~PGiSsfa~nP~~a~~~l~ 68 (501)
T KOG1386|consen 6 PNLKYGIVIDAGSSGTRLFVYKWPAES---G-NPL-T--------GIVGQ----IYDCLKLGPGISSFADNPEGASVYLT 68 (501)
T ss_pred CcceEEEEEecCCCCceEEEEeecccC---C-Ccc-c--------Cccch----hhcccccCCChhhhccChhhhHHHHH
Confidence 457999999999999999999997531 1 111 1 11111 12347899999999999999999999
Q ss_pred HHHHHHHHhCCCcCCCcccEEEEecHHHhcCChhhHHHHHHHHHHHHh-cCCCcccCceeEEcCchhHHHHHHHHHHHhh
Q 008515 135 PLILWAEWLVPLERQEETPIFVLATAGLRRLTVEDARWVLDDVEAVVK-EHSFMYEKSWIRVLSGKEEAYYGWVALNYKM 213 (563)
Q Consensus 135 ~Ll~~A~~~IP~~~~~~tpv~l~ATAGmR~L~~~~~~~iL~~v~~~l~-~~~f~~~~~~v~VIsG~eEg~y~WiavNyll 213 (563)
|||++|+++||+++|++|||+|+||||||+||.+++++||+.++++|+ .++|.|+++||+||||+|||+|+|||+||++
T Consensus 69 pLlefA~~~IPk~~h~~Tpl~l~ATAGMRLL~~~~qeaIl~~l~~~l~~~s~f~f~~~~a~IIsG~~EGvYgWi~~NY~L 148 (501)
T KOG1386|consen 69 PLLEFAKEHIPKEKHKETPLFLGATAGMRLLPLAQQEAILEVLRRVLKSLSDFLFDDEWARIISGKEEGVYGWIAANYLL 148 (501)
T ss_pred HHHHHHHhhCCHhhcCCCCeEEEecccceecCcccHHHHHHHHHHhcccccCCcccccccEEeecccceehhhHHHHHHH
Confidence 999999999999999999999999999999999999999999999998 6899999999999999999999999999999
Q ss_pred hcCCCCC----CCCceeeeecCCCceEEEEecC---CCCCCCceEEEEec---ceeEEEEEEeeccccHHHHHHHHHHHH
Q 008515 214 GSLGNSS----ITPTLGLLDLGGSSLQIVMEDD---GTGNDEHLIRSEIG---SIEHRVLAYSLQEFGLNAAFDRAVAML 283 (563)
Q Consensus 214 g~l~~~~----~~~t~gvlDlGG~StQIaf~~~---~~~~~~~~~~~~l~---~~~~~ly~~S~LgyGln~Ar~r~~~~L 283 (563)
|+|++.+ +.+|+|+||||||||||||++. +..+++...++.+| ...|+||+|||||||.|+|++|++++|
T Consensus 149 G~f~~~~~~~~~~~T~G~lDlGGAS~QItFe~~~~~e~~~~~~~~~i~~G~~~~~~Y~ly~~SfLgyG~N~A~~ry~~~L 228 (501)
T KOG1386|consen 149 GRFGKKNRWDSRKETFGALDLGGASTQITFEPPNQQEEVPKENLQTINYGNDNLVKYRLYVHSFLGYGANEALDRYLAML 228 (501)
T ss_pred HhccccCcccCCcceeeeEecCCceeEEEEecCccccccchhhhhheecCCCCceEEEEEEEeecccchhHHHHHHHHHH
Confidence 9999832 6789999999999999999996 34456667777888 267999999999999999999999999
Q ss_pred hhccCCC---CCCCCCccccCCCccccccceeeeccccccccccccccccccccceeeEeecCCChHhHHHHHHHHHhhc
Q 008515 284 SQVQMPR---EGAGDRLEIRHPCLSSELLQNYTCNGCVGQNVADRKLSKVKKTAFTSTYLVGEPNWDNCKGIARAVAINS 360 (563)
Q Consensus 284 ~~~~~~~---~~~~~~~~i~~PClp~Gy~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~G~gnf~~C~~~v~~~l~~~ 360 (563)
++..+++ ++..++.++.|||+|+||+..+++..|.... ... .......+.+.|+|||++|++.+.+++
T Consensus 229 l~~~~n~n~~~~~~~~~~~~DPC~p~Gy~~~~~~~~~~~~~--~~e----~~~~~~~~~~~GtGn~~~C~~~v~~ll--- 299 (501)
T KOG1386|consen 229 LEKLPNKNGLTGLTGDNPLTDPCLPRGYNYDVNLSDVYSSP--CPE----ESKNGQSIELQGTGNWSQCRSAVLPLL--- 299 (501)
T ss_pred HHhccccccccccccCcccCCCCCCCCcceeeeeccccccc--ccc----ccCCCceEEEecCCCHHHHHHHHHHhc---
Confidence 9875443 2234456899999999999999887653211 111 112346788899999999999999988
Q ss_pred CCCCCCCCCCCCCCCCCCCCC-CCcccccccccCccccceeechhhhhhhh-hcCCCCCcchHHHHHHhccccCCchHHH
Q 008515 361 SNLDWSLPTGDVNCKASLSSS-DSRKILNSTAVNHRTERFHALSGFFVVYN-KLNLSSGANLTRILDRGQQLCSRSWIDL 438 (563)
Q Consensus 361 s~~~~~~~~~~~~C~~~~~c~-~g~~q~~~~~~p~~~~~fya~S~fy~~~~-~lgl~~~~~l~~~~~~a~~~C~~~W~~~ 438 (563)
.+..|.++ +|+ +|++| |..+++|||||+|||+++ +|||++++++++|.+++++||+++|+++
T Consensus 300 ---------~~~~C~~~-~Csf~gv~~------P~i~f~f~~fSef~y~t~~~f~lgg~y~~~~f~~~~~~fC~~~Ws~l 363 (501)
T KOG1386|consen 300 ---------NFKSCPYQ-PCSFNGVFQ------PPIQFEFYGFSEFFYTTNDVFGLGGKYSLDKFTKAGREFCGKEWSTL 363 (501)
T ss_pred ---------CCCCCCCc-ccccCCEeC------CCcCceeEEEEeeeeehhhhhcccceecHHHHHHHHHHHhhchHHHH
Confidence 23889998 886 88888 444568999999999765 8999999999999999999999999999
Q ss_pred Hhh-cC--CCCchhhccCcHHHHHHHhhhccCCCCC---ceE----ECCCccccchHHHHHhhccccccccc
Q 008515 439 KKA-TG--HQNYTGQYCFQVPYMTSLIQEALCLGDA---EII----FGPADLSWTLGAVLVEGKYLWQSSTR 500 (563)
Q Consensus 439 ~~~-~~--~~~~~~~~Cf~~~Yi~sLL~~G~gl~~~---~i~----~~~~ei~WtLGa~L~ea~~~~~~~~~ 500 (563)
+++ ++ +++++.+|||+++||++||||||+|+.+ +|+ +++.|++|||||+||++++.+....+
T Consensus 364 ~~~~y~~~dE~~L~~yCFkaawi~slLh~Gf~~~~~~~~~i~~~~kv~~~el~WtLG~~lY~~~f~~~~~~~ 435 (501)
T KOG1386|consen 364 RTRKYPSADEEYLKTYCFKAAWILSLLHEGFGFPKDQWESIQFASKVAGSELQWTLGAILYMASFIPLIPLE 435 (501)
T ss_pred HhccCCCCCHHHHHHHhhhHHHHHHHHhcccCCCcccccccchhhhhcCcccchhhhhHHHHhhcccCCccc
Confidence 986 44 4678999999999999999999999876 343 46789999999999999998876555
No 2
>PF01150 GDA1_CD39: GDA1/CD39 (nucleoside phosphatase) family; InterPro: IPR000407 A number of nucleoside diphosphate and triphosphate hydrolases as well as some yet uncharacterised proteins have been found to belong to the same family [, ]. The uncharacterised proteins all seem to be membrane-bound. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0016787 hydrolase activity; PDB: 3AAP_A 3AAR_A 3AAQ_A 3AGR_A 4A5B_B 4A57_D 4A59_A 4A5A_B 3CJA_A 3CJ1_A ....
Probab=100.00 E-value=2.4e-85 Score=710.18 Aligned_cols=396 Identities=32% Similarity=0.553 Sum_probs=316.5
Q ss_pred CceEEEEEEeccCceEEEEEEEecCCccCCCccccccccCCCCccchhccccccccccccccchhccCCCHHHHHHHHHH
Q 008515 56 GSYYTVVVDCGSTGTRVNVYEWKKRGVESENLPVLVGTYPDNSTKSLLRKSSCQYHCLQTEPGLDKLVGNASGIRASLEP 135 (563)
Q Consensus 56 ~~~Y~vVIDaGSsgtRl~Vy~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~pGLss~~~~p~~~~~~l~~ 135 (563)
..+|+|||||||||||+|||+|.... ...++.. .... ..+..+.+++||||+|+++|++++++|++
T Consensus 6 ~~~y~vviDAGSsgsR~~vy~~~~~~--~~~~~~~-~~~~-----------~~~~~~~~~~pgls~~~~~~~~~~~~l~~ 71 (434)
T PF01150_consen 6 SRKYGVVIDAGSSGSRVHVYKWRCRD--NNSLPVV-PLVE-----------QSKPVFKKVEPGLSSFADNPEKAAESLQP 71 (434)
T ss_dssp EEEEEEEEEEESSEEEEEEEEEEEEE--CCGCEEE-EEEE-----------EBEEHCCHHCCHHHHHTTTTHHHHHHHHH
T ss_pred CccEEEEEEcCCCCceEEEEEEecCC--CccCCcc-ccce-----------eccchhhcccchHHHhCCChHHHHHHHHH
Confidence 46899999999999999999997521 1112211 1000 00011357899999999999999999999
Q ss_pred HHHHHHHhCCCcCCCcccEEEEecHHHhcCChhhHHHHHHHHHHHHh-cCCCcccCceeEEcCchhHHHHHHHHHHHhhh
Q 008515 136 LILWAEWLVPLERQEETPIFVLATAGLRRLTVEDARWVLDDVEAVVK-EHSFMYEKSWIRVLSGKEEAYYGWVALNYKMG 214 (563)
Q Consensus 136 Ll~~A~~~IP~~~~~~tpv~l~ATAGmR~L~~~~~~~iL~~v~~~l~-~~~f~~~~~~v~VIsG~eEg~y~WiavNyllg 214 (563)
|+++|++.||++.|+.|||+|+||||||+|+.+++++||++|+++|+ .++|.|.++||+||+|+|||+|+||||||++|
T Consensus 72 ll~~a~~~ip~~~~~~tpi~l~ATAGmRlL~~~~~~~il~~~~~~l~~~~~f~~~~~~v~visG~eEg~y~WvtvNyl~g 151 (434)
T PF01150_consen 72 LLDFAKSVIPKSQHSSTPIYLGATAGMRLLPEEQQEAILDEVRNYLRSSSPFPFRDSWVRVISGEEEGIYGWVTVNYLLG 151 (434)
T ss_dssp HHHHHHHHHHHHHSCHEEEEEEE-HHHHTHHHHHHHHHHHHHHHCHHCHCTSSEEETTCEE--HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhhCCHHHhCCeeEEEecccccEECChhhHHHHHHHHHHhhccCCCCccCccceEecCHHHhhHhHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999997 58999999999999999999999999999999
Q ss_pred cCCCC----CCCCceeeeecCCCceEEEEecCCC------CCC--CceEEEEecceeEEEEEEeeccccHHHHHHHHHHH
Q 008515 215 SLGNS----SITPTLGLLDLGGSSLQIVMEDDGT------GND--EHLIRSEIGSIEHRVLAYSLQEFGLNAAFDRAVAM 282 (563)
Q Consensus 215 ~l~~~----~~~~t~gvlDlGG~StQIaf~~~~~------~~~--~~~~~~~l~~~~~~ly~~S~LgyGln~Ar~r~~~~ 282 (563)
+|... ...+|+|+||||||||||||++++. ..+ .+..++++++++|+||+|||||||+|+||+|+++.
T Consensus 152 ~l~~~~~~~~~~~t~g~lDlGGaStQIaf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vys~SyLgyG~~~Ar~~~l~~ 231 (434)
T PF01150_consen 152 RLDSSGASKSPSNTVGALDLGGASTQIAFEPSEGTFSNSSLEDINSYIRRLKLGGKNYDVYSHSYLGYGLNEARKRYLAS 231 (434)
T ss_dssp TSSSSTEEEEESS-EEEEEE-SSEEEEEEEETTTTTSCTTSSGCE-GCCCCCCTTCCCEEEEEEEETCSHHHHHHHHHHH
T ss_pred ccccccccCCCCceEEEEecCCcceeeeeccCcccccccccccccchheeeccccceeEEEEeecccccHHHHHHHHHHH
Confidence 99876 2468999999999999999999721 111 13567789999999999999999999999999999
Q ss_pred HhhccCCCCCCCCCccccCCCccccccceeeeccccccccccccccccccccceeeEeecCCChHhHHHHHHHHHhhcCC
Q 008515 283 LSQVQMPREGAGDRLEIRHPCLSSELLQNYTCNGCVGQNVADRKLSKVKKTAFTSTYLVGEPNWDNCKGIARAVAINSSN 362 (563)
Q Consensus 283 L~~~~~~~~~~~~~~~i~~PClp~Gy~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~G~gnf~~C~~~v~~~l~~~s~ 362 (563)
+++..... ....+.|||+|+||..+++...+. ...+.+.|+|||++|++++++++
T Consensus 232 l~~~~~~~----~~~~i~~PC~p~G~~~~~~~~~~~----------------~~~~~~~Gtg~~~~C~~~i~~~l----- 286 (434)
T PF01150_consen 232 LVSNSSKK----SSGVIPNPCLPKGYNQSWTYSDVE----------------YDVITLTGTGDFEKCRELIRKLL----- 286 (434)
T ss_dssp HTTSTTTE----ETCEEEETTS-BT-EEESCSCHEE----------------SSCCEBTTHHHHHHCCTTSHHHH-----
T ss_pred Hhhhcccc----cccccCCccccCCccceEEecccc----------------cccccCCCCCchHHHHHHHHHHh-----
Confidence 98753211 234799999999999877643220 12457789999999999999998
Q ss_pred CCCCCCCCCCCCCCCCCCC-CCcccccccccCccccceeechhhhhhhhhcCCCCCc---chHHHHHHhccccCCchHHH
Q 008515 363 LDWSLPTGDVNCKASLSSS-DSRKILNSTAVNHRTERFHALSGFFVVYNKLNLSSGA---NLTRILDRGQQLCSRSWIDL 438 (563)
Q Consensus 363 ~~~~~~~~~~~C~~~~~c~-~g~~q~~~~~~p~~~~~fya~S~fy~~~~~lgl~~~~---~l~~~~~~a~~~C~~~W~~~ 438 (563)
..+..|... +|+ +++++|+.. ...+.||++|+||++.++||+.+.. ++.+|.++++++|+++|+++
T Consensus 287 ------~~~~~c~~~-~C~~~~v~~p~~~---~~~~~f~a~s~fy~~~~~l~l~~~~~~~~l~~~~~aa~~~Cs~~w~~i 356 (434)
T PF01150_consen 287 ------NKNANCEYS-PCSFNGVYQPSIP---SGNGFFYAFSYFYYTADFLGLVSPSDTYTLSDFKSAAKEFCSKSWSEI 356 (434)
T ss_dssp ------T--SHHHHH-HHHTTTTBTTSHH---HHHHSETTEEEEEEHHHHHHHHHHHHTSSSSHHHHHHHHHHTSSHHHH
T ss_pred ------hccccCCCC-CCccCCccCCccc---ccccceeEEEEEEEeehhcCcCCccccccchHHHHHHHHHHcchHHHH
Confidence 235788877 775 788884322 2457899999999999999998765 99999999999999999999
Q ss_pred HhhcCCCC--ch----hhccCcHHHHHHHhhhccCCCCC--ce----EECCCccccchHHHHHhhccccccccc
Q 008515 439 KKATGHQN--YT----GQYCFQVPYMTSLIQEALCLGDA--EI----IFGPADLSWTLGAVLVEGKYLWQSSTR 500 (563)
Q Consensus 439 ~~~~~~~~--~~----~~~Cf~~~Yi~sLL~~G~gl~~~--~i----~~~~~ei~WtLGa~L~ea~~~~~~~~~ 500 (563)
.+..+... +. +++||+++||++||++||||+++ +| +|++.|++|||||||++++.++....+
T Consensus 357 ~~~~~~~~~~~~~~~l~~~Cf~~~yi~sLL~~Gyg~~~~~~~i~~~~kI~~~ev~WtLGa~l~~~~~~~~~~~~ 430 (434)
T PF01150_consen 357 KAEFPGNKYKYLPDELPYYCFDAAYIYSLLHDGYGFDDDSQEITFVKKINGQEVSWTLGAALYLINALPEQKFQ 430 (434)
T ss_dssp HHHSCCSSHEEEESHHHHHHHHHHHHCCCCHTTS--THHHHHCCCHHHHHTEEEECHHHCCCCHTTTSEEEE--
T ss_pred HHhhhhhhhhhhcchHHHHHHHHHHHHHHHhcccCCCCCCceEEeeeeeCCcccCcHHHHHHHHhhccchhhhc
Confidence 98876432 33 38999999999999999999987 45 357899999999999999998864443
No 3
>KOG1385 consensus Nucleoside phosphatase [Nucleotide transport and metabolism]
Probab=100.00 E-value=5.3e-79 Score=627.52 Aligned_cols=361 Identities=25% Similarity=0.413 Sum_probs=302.3
Q ss_pred CceEEEEEEeccCceEEEEEEEecCCccCCCccccccccCCCCccchhccccccccccccccchhccCCCHHHHHHHHHH
Q 008515 56 GSYYTVVVDCGSTGTRVNVYEWKKRGVESENLPVLVGTYPDNSTKSLLRKSSCQYHCLQTEPGLDKLVGNASGIRASLEP 135 (563)
Q Consensus 56 ~~~Y~vVIDaGSsgtRl~Vy~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~pGLss~~~~p~~~~~~l~~ 135 (563)
+.+|+|||||||||||||||+|+.+ .+...|.+.++. +.+++||||+|++||++++++|++
T Consensus 65 ~~~Y~iiiDAGSTGsRvHvY~F~~~--~~~~~p~le~E~-----------------F~~~kPGLSsfaddp~~aA~Sl~~ 125 (453)
T KOG1385|consen 65 KRQYAIIIDAGSTGTRVHVYKFDQC--LPGMPPELEHEL-----------------FKEVKPGLSSFADDPEEAANSLRP 125 (453)
T ss_pred ceEEEEEEecCCCcceEEEEEeccC--CCCCCchhHHHH-----------------HhhcCCcccccCCChHHHHHhHHH
Confidence 4699999999999999999999764 123445554432 246899999999999999999999
Q ss_pred HHHHHHHhCCCcCCCcccEEEEecHHHhcCChhhHHHHHHHHHHHHh-cCCCcccCceeEEcCchhHHHHHHHHHHHhhh
Q 008515 136 LILWAEWLVPLERQEETPIFVLATAGLRRLTVEDARWVLDDVEAVVK-EHSFMYEKSWIRVLSGKEEAYYGWVALNYKMG 214 (563)
Q Consensus 136 Ll~~A~~~IP~~~~~~tpv~l~ATAGmR~L~~~~~~~iL~~v~~~l~-~~~f~~~~~~v~VIsG~eEg~y~WiavNyllg 214 (563)
||+.|++.||.+.|++|||.++||||+|+||.+.+++||++||+.|+ +++|...++.|.||+|.|||+|+|||+|||+|
T Consensus 126 LLd~A~~~vP~~~~~kTPi~lkATAGLRlL~~~ka~~IL~aVre~l~~~s~f~v~~d~VsIm~GtdEGv~aWiTiN~Llg 205 (453)
T KOG1385|consen 126 LLDVAEAFVPREHWKKTPIVLKATAGLRLLPGSKADNILQAVRELLKNDSPFPVVEDAVSIMDGTDEGVYAWITINYLLG 205 (453)
T ss_pred HHHHHHhhCCHhHhccCceEEEeecccccCChhHHHHHHHHHHHHHhccCCccccCCceeeccCcccceeeeeehhhhhc
Confidence 99999999999999999999999999999999999999999999998 79999888889999999999999999999999
Q ss_pred cCCCCCCCCceeeeecCCCceEEEEecCC----CCCCCceEEEEecceeEEEEEEeeccccHHHHHHHHHHHHhhccCCC
Q 008515 215 SLGNSSITPTLGLLDLGGSSLQIVMEDDG----TGNDEHLIRSEIGSIEHRVLAYSLQEFGLNAAFDRAVAMLSQVQMPR 290 (563)
Q Consensus 215 ~l~~~~~~~t~gvlDlGG~StQIaf~~~~----~~~~~~~~~~~l~~~~~~ly~~S~LgyGln~Ar~r~~~~L~~~~~~~ 290 (563)
+++.+ .++|+|++|||||||||+|.|+. ...+.+.+.+.+++++|+||+|||||||+.+||..++. ...++
T Consensus 206 ~L~~~-~~~tvgv~DLGGGSTQi~f~p~~e~~~~~~~~y~~~l~~~~~ky~LythSyLg~GL~aAR~~il~-~~e~~--- 280 (453)
T KOG1385|consen 206 TLGAP-GHRTVGVVDLGGGSTQITFLPTFEDTLEAPVPYKRELDFFGRKYKLYTHSYLGLGLKAARLAILK-VLENE--- 280 (453)
T ss_pred ccCCC-CCCceEEEEcCCceEEEEEecCcccccccCCcceeeeeecCceEEEEEecccchHHHHHHHhhhh-hhccc---
Confidence 99875 47899999999999999999943 23345888899999999999999999999999977666 33322
Q ss_pred CCCCCCccccCCCccccccceeeeccccccccccccccccccccceeeEeec----CCChHhHHHHHHHHHhhcCCCCCC
Q 008515 291 EGAGDRLEIRHPCLSSELLQNYTCNGCVGQNVADRKLSKVKKTAFTSTYLVG----EPNWDNCKGIARAVAINSSNLDWS 366 (563)
Q Consensus 291 ~~~~~~~~i~~PClp~Gy~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~G----~gnf~~C~~~v~~~l~~~s~~~~~ 366 (563)
....++.+||+|+||..+|+++. ..+++.| ...+++|+..+.+++.
T Consensus 281 ---~~~h~l~spCl~~~~~~~~~~~~-------------------~~y~v~~~~s~~~~~E~c~~~~~~~l~-------- 330 (453)
T KOG1385|consen 281 ---ETTHQLISPCLPPGYAGEWEYGG-------------------VTYKVSGSQSGASLFEQCRGTIDAVLE-------- 330 (453)
T ss_pred ---cccceeeccccCcchhhheeecc-------------------eEEEecCccCccccchhhHHHHHHHHh--------
Confidence 12346899999999999887643 2233333 4568999999999881
Q ss_pred CCCCCCCCCCCCCCCCCcccccccccCccccceeechhhhhhhhhcCCCCC-----cchHHHHHHhccccCCchHHHHhh
Q 008515 367 LPTGDVNCKASLSSSDSRKILNSTAVNHRTERFHALSGFFVVYNKLNLSSG-----ANLTRILDRGQQLCSRSWIDLKKA 441 (563)
Q Consensus 367 ~~~~~~~C~~~~~c~~g~~q~~~~~~p~~~~~fya~S~fy~~~~~lgl~~~-----~~l~~~~~~a~~~C~~~W~~~~~~ 441 (563)
+ .|... ||.++ +.+||+||||||++...|+.+. ..+.|+..+|+++|+.. ..
T Consensus 331 ---~--~~~~~-p~~~~------------~~~~y~fSYfyDRa~~~G~vd~~~~~~~~v~df~~ka~~~c~~~-----~t 387 (453)
T KOG1385|consen 331 ---G--SCVHR-PCEFK------------QSDVYLFSYFYDRAAEVGLVDPFKGGMLEVADFEKKAEEACRSL-----ET 387 (453)
T ss_pred ---c--Ccccc-ccccC------------CCcEEEEehhhhhhhhcCCccCCccccchHHHHHHHHHHHHHhh-----hc
Confidence 1 57766 77643 4579999999999999999654 46889999999999764 12
Q ss_pred cCC--CCchhhccCcHHHHHHHhhhccCCCCCce-----EECCCccccchHHHHHhhcc
Q 008515 442 TGH--QNYTGQYCFQVPYMTSLIQEALCLGDAEI-----IFGPADLSWTLGAVLVEGKY 493 (563)
Q Consensus 442 ~~~--~~~~~~~Cf~~~Yi~sLL~~G~gl~~~~i-----~~~~~ei~WtLGa~L~ea~~ 493 (563)
.+. ..+.++.|+|++||++||++||||+|.+. +|++.|++|+||+++.....
T Consensus 388 ~~~~e~~~~P~~ClDL~Y~~sLL~~Gfgi~dsk~l~l~KKi~~~Ei~W~LGaa~~~l~s 446 (453)
T KOG1385|consen 388 FPLDELSNLPFLCLDLTYIISLLKDGFGIEDSKVLHLAKKIDNIEISWALGAAFELLKS 446 (453)
T ss_pred cCccccccCcHHHHHHHHHHHHHHhhcCCCCCceeEeeeecCceEeehhcccchhhhhc
Confidence 222 24567999999999999999999999753 58899999999999875543
No 4
>COG5371 Golgi nucleoside diphosphatase [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.2e-42 Score=356.30 Aligned_cols=386 Identities=20% Similarity=0.194 Sum_probs=298.9
Q ss_pred ceEEEEEEeccCceEEEEEEEecCCccCCCccccccccCCCCccchhccccccccccccccchhccCCCHHHHHHHHHHH
Q 008515 57 SYYTVVVDCGSTGTRVNVYEWKKRGVESENLPVLVGTYPDNSTKSLLRKSSCQYHCLQTEPGLDKLVGNASGIRASLEPL 136 (563)
Q Consensus 57 ~~Y~vVIDaGSsgtRl~Vy~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~pGLss~~~~p~~~~~~l~~L 136 (563)
.+|..+|||||+|+|+|||++.++..+ |.... .. ...+.||+++|..++.+++.++.+|
T Consensus 119 ~qYv~~idagstgsr~~iyqfidge~~----~~~~~----~~-------------~n~L~~~l~d~d~~t~G~~~s~~~l 177 (549)
T COG5371 119 CQYVKMIDAGSTGSRSNIYQFIDGEIE----GQYLW----LN-------------TNYLEPGLSDFDTDTVGFADSGGAL 177 (549)
T ss_pred hheecccccCCCccceeEEEeecCccC----cchhh----hh-------------hhhhcccccccccccHHHHhhccHH
Confidence 489999999999999999999864321 22111 11 1358999999999999999999999
Q ss_pred HHHHHHhCCCcCCCcccEEEEecHHHhcCChhhHHHHHHHHHHHHhc-CCCc-ccCceeEEcCchhHHHHHHHHHHHhhh
Q 008515 137 ILWAEWLVPLERQEETPIFVLATAGLRRLTVEDARWVLDDVEAVVKE-HSFM-YEKSWIRVLSGKEEAYYGWVALNYKMG 214 (563)
Q Consensus 137 l~~A~~~IP~~~~~~tpv~l~ATAGmR~L~~~~~~~iL~~v~~~l~~-~~f~-~~~~~v~VIsG~eEg~y~WiavNyllg 214 (563)
++.|...+|.+..+++|+.+.||||+|++.+.++..|+..+|.-|++ ++|. ...+.|+||.|.+||.|+|+..||+++
T Consensus 178 ~qiA~~~~p~e~~r~~pi~~~~taGlrl~Gds~s~~vl~s~r~~l~~n~~f~~y~g~~ieil~G~~Eg~~a~~~m~~~ls 257 (549)
T COG5371 178 LQIAFEFVPSEIRRCMPIIVTATAGLRLLGDSRSDHVLVSTRLGLGANYAFRRYLGDLIEILNGVDEGNLADPCMNRGLS 257 (549)
T ss_pred HHhhhccCCHHHhhcCcceEEEEeeeeecCccchhhHHHHHHHhhccccccceecccceeeccCccccchhhhhhhhhhc
Confidence 99999999999999999999999999999999999999999999974 7885 455789999999999999999999999
Q ss_pred cCCCCCC-CCceeeeecCCCceEEEEecCC------CCCCCceEEEEecceeEEEEEEeeccccHHHHHHHHHHHHhhcc
Q 008515 215 SLGNSSI-TPTLGLLDLGGSSLQIVMEDDG------TGNDEHLIRSEIGSIEHRVLAYSLQEFGLNAAFDRAVAMLSQVQ 287 (563)
Q Consensus 215 ~l~~~~~-~~t~gvlDlGG~StQIaf~~~~------~~~~~~~~~~~l~~~~~~ly~~S~LgyGln~Ar~r~~~~L~~~~ 287 (563)
+.+.... ..|.+++|+|||||||.|++.. ..+..|...+.+++.+|.+|.||+++||++++|+..-...+...
T Consensus 258 ~~g~~~~~~~T~~v~d~gg~stqll~~~r~~~~~~~~~DG~h~~~ldf~~e~~k~~g~Se~~Y~andv~~~~~~~~~~nf 337 (549)
T COG5371 258 NDGTDAGTHGTGAVVDCGGGSTQLLLKPRPCSDIPCLFDGGHKPLLDFANEEYKFYGDSELWYTANDVFKKGGSVAFRNF 337 (549)
T ss_pred cccCCCcccCcccceeccCcceeeeecCCCCccccccccCccccccccCCccceEEeehhhhhhHHHHHhhccceechhH
Confidence 9876533 6789999999999999999832 23567888889999999999999999999999986433332211
Q ss_pred -----CCCCCCCCCccccCCCccccccceeeeccccccccccccccccccccceeeEeecCCCh---HhHHHHHHHHHhh
Q 008515 288 -----MPREGAGDRLEIRHPCLSSELLQNYTCNGCVGQNVADRKLSKVKKTAFTSTYLVGEPNW---DNCKGIARAVAIN 359 (563)
Q Consensus 288 -----~~~~~~~~~~~i~~PClp~Gy~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~G~gnf---~~C~~~v~~~l~~ 359 (563)
..-..++ +..+.|||+++.-..+. -..|.-.. ...++-..|.-+. .+|+.++..++
T Consensus 338 lKsv~el~g~s~-t~~l~~~~l~~~i~~~~-k~s~~eak------------~~l~il~~G~d~p~~s~qcr~l~~~~L-- 401 (549)
T COG5371 338 LKSVDELCGDSW-TQILSHKELGPSIRENL-KDSCFEAK------------WVLNILHEGFDNPLESHQCRNLADLIL-- 401 (549)
T ss_pred HHHHHHHhcccc-hhhhcCcccCcccchhh-hhhhhhhh------------hheeeeeeccCCcccchhhhhhhhhhh--
Confidence 0001122 23377999998665541 12232111 1113334665443 59999999888
Q ss_pred cCCCCCCCCCCCCCCCCCCCCC-CCcccccccccCccccceeechhhhhhhhhcCCCC-CcchHHHHHHhccccC--Cch
Q 008515 360 SSNLDWSLPTGDVNCKASLSSS-DSRKILNSTAVNHRTERFHALSGFFVVYNKLNLSS-GANLTRILDRGQQLCS--RSW 435 (563)
Q Consensus 360 ~s~~~~~~~~~~~~C~~~~~c~-~g~~q~~~~~~p~~~~~fya~S~fy~~~~~lgl~~-~~~l~~~~~~a~~~C~--~~W 435 (563)
.++..|... +|+ +|++|+.+.-.-...-+.|.+|+||+....||++. .++..+|...|.-+|. .-|
T Consensus 402 ---------~kd~~c~sp-f~S~~gVeq~k~s~Tl~~~l~~y~isy~~~rgk~L~~p~~sft~k~~~~la~i~C~~~~~~ 471 (549)
T COG5371 402 ---------SKDPACHSP-FCSFEGVEQTKLSWTLGTSLDIYNISYAYDRGKLLGSPSNSFTNKGFLMLAIIVCIFYLIW 471 (549)
T ss_pred ---------ccccccCCC-ccccccccccceeeeccccCcceeEEEecCCCcccCCcccccchhHHHHHHHHHHhhHHHH
Confidence 467899888 775 99999766543222237899999999999999988 8999999999999998 456
Q ss_pred HHHHhhcC---CCCchhhccCcHHHHHHHhhhccCCCCCc-----eEECCCccccchHHHHH
Q 008515 436 IDLKKATG---HQNYTGQYCFQVPYMTSLIQEALCLGDAE-----IIFGPADLSWTLGAVLV 489 (563)
Q Consensus 436 ~~~~~~~~---~~~~~~~~Cf~~~Yi~sLL~~G~gl~~~~-----i~~~~~ei~WtLGa~L~ 489 (563)
..+-...+ +.+.....|++..|..+||+.||.++.++ .++...|.+|.|||.+-
T Consensus 472 ~~~Fsl~~~~ke~k~~~~~~L~~~~~~slls~gYei~~~~~~~~~ks~~nke~g~~l~as~s 533 (549)
T COG5371 472 RRRFSLYNILKELKRRRLKCLDRSDPFSLLSEGYEIPSSRMLDLGKSSANKEHGPCLGASLS 533 (549)
T ss_pred HHHhccchHHHHHHhhhHHHhhhccchhhhhccccCchhhhhhhcccccccccccccccchh
Confidence 54422111 11234569999999999999999988753 35667899999999873
No 5
>COG5371 Golgi nucleoside diphosphatase [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-38 Score=330.16 Aligned_cols=389 Identities=21% Similarity=0.307 Sum_probs=285.8
Q ss_pred ceEEEEEEeccCceEEEEEEEecCCcc-CCCcc-ccccccC-CCCccchhccccccccccccccchhccCCCHHHHH-HH
Q 008515 57 SYYTVVVDCGSTGTRVNVYEWKKRGVE-SENLP-VLVGTYP-DNSTKSLLRKSSCQYHCLQTEPGLDKLVGNASGIR-AS 132 (563)
Q Consensus 57 ~~Y~vVIDaGSsgtRl~Vy~~~~~~~~-~~~~p-~l~~~~~-~~~~~~~~~~~~~~~~~~~~~pGLss~~~~p~~~~-~~ 132 (563)
++|++||||||+|+||+||.|+..... ....| .+..... ..+.+.| ..+..||||+|..+|+.+. .+
T Consensus 3 ~~~~~~~d~~~s~~~v~~~~w~~~t~Ss~~~~~~si~~~~~~~~~~~~w---------~~k~~~~is~~~~k~~~~~~~~ 73 (549)
T COG5371 3 PRFGIVIDAGSSGSRVHVFKWDQDTESSLHATPQSILQSVTHIHQEPDW---------TFKLNPGISSFEKKPQDAEKSH 73 (549)
T ss_pred chhhhhhhhhcccceEEEEEeccCcccccCCCCccccccccCcccCCcc---------ccccCCcccccCCCcccccccc
Confidence 579999999999999999999643211 11112 1111111 1111111 1467899999999998774 68
Q ss_pred HHHHHHHHHHhCCCcCCCcccEEEEecHHHhcCChhhHHHHHHHHHHHHhc-CCCcc--cCceeEEcCchhHHHHHHHHH
Q 008515 133 LEPLILWAEWLVPLERQEETPIFVLATAGLRRLTVEDARWVLDDVEAVVKE-HSFMY--EKSWIRVLSGKEEAYYGWVAL 209 (563)
Q Consensus 133 l~~Ll~~A~~~IP~~~~~~tpv~l~ATAGmR~L~~~~~~~iL~~v~~~l~~-~~f~~--~~~~v~VIsG~eEg~y~Wiav 209 (563)
+++||++|+..||+..+..+|+++.||||||+|++.-|.-+++.++++++. .-|.. +-.-+++|+|+-|+.|+|...
T Consensus 74 lkelLdfa~~~IP~k~~~~~P~la~atA~~~lls~Dsq~~s~~~~~qYv~~idagstgsr~~iyqfidge~~~~~~~~~~ 153 (549)
T COG5371 74 LKELLDFAKNIIPEKTMPSLPVLAGATAAMRLLSQDSQPCSLIHLCQYVKMIDAGSTGSRSNIYQFIDGEIEGQYLWLNT 153 (549)
T ss_pred ccchhhhhhccCchhhccccceeccccccccccCCCCCchhhHhhhheecccccCCCccceeEEEeecCccCcchhhhhh
Confidence 999999999999999999999999999999999999999999999987764 22332 345689999999999999999
Q ss_pred HHhhhcCCCCCCCCceeeeecCCCceEEEEecCCC-----CCCCce--EEEEecc--eeEEEEEEeeccccHHHHHHHHH
Q 008515 210 NYKMGSLGNSSITPTLGLLDLGGSSLQIVMEDDGT-----GNDEHL--IRSEIGS--IEHRVLAYSLQEFGLNAAFDRAV 280 (563)
Q Consensus 210 Nyllg~l~~~~~~~t~gvlDlGG~StQIaf~~~~~-----~~~~~~--~~~~l~~--~~~~ly~~S~LgyGln~Ar~r~~ 280 (563)
|||.+.+... +..|+|+.|+||+++||||+.... .+.... ..+++.| +.+.|++..++|||.|+|+.||+
T Consensus 154 n~L~~~l~d~-d~~t~G~~~s~~~l~qiA~~~~p~e~~r~~pi~~~~taGlrl~Gds~s~~vl~s~r~~l~~n~~f~~y~ 232 (549)
T COG5371 154 NYLEPGLSDF-DTDTVGFADSGGALLQIAFEFVPSEIRRCMPIIVTATAGLRLLGDSRSDHVLVSTRLGLGANYAFRRYL 232 (549)
T ss_pred hhhccccccc-ccccHHHHhhccHHHHhhhccCCHHHhhcCcceEEEEeeeeecCccchhhHHHHHHHhhccccccceec
Confidence 9999988764 468999999999999999987332 111111 1233222 56889999999999999999998
Q ss_pred HHHhhccCCCCCCCCCccccCCCccccccceeeeccccccccccccccccccccceeeEeecCCChHhHHHHHHHHHhhc
Q 008515 281 AMLSQVQMPREGAGDRLEIRHPCLSSELLQNYTCNGCVGQNVADRKLSKVKKTAFTSTYLVGEPNWDNCKGIARAVAINS 360 (563)
Q Consensus 281 ~~L~~~~~~~~~~~~~~~i~~PClp~Gy~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~G~gnf~~C~~~v~~~l~~~ 360 (563)
..+++.... ...+.+.+||++.|.....+ .....|+++..+|-...-+++
T Consensus 233 g~~ieil~G----~~Eg~~a~~~m~~~ls~~g~-----------------------~~~~~~T~~v~d~gg~stqll--- 282 (549)
T COG5371 233 GDLIEILNG----VDEGNLADPCMNRGLSNDGT-----------------------DAGTHGTGAVVDCGGGSTQLL--- 282 (549)
T ss_pred ccceeeccC----ccccchhhhhhhhhhccccC-----------------------CCcccCcccceeccCcceeee---
Confidence 777654321 12336789999998654321 011258899999998888777
Q ss_pred CCCCCCCCCCCCCCCCCCCCC-CCcccccccccCccccceeechhhhhhhh-hcCCCCCcchHHHHHHhccccCCchHHH
Q 008515 361 SNLDWSLPTGDVNCKASLSSS-DSRKILNSTAVNHRTERFHALSGFFVVYN-KLNLSSGANLTRILDRGQQLCSRSWIDL 438 (563)
Q Consensus 361 s~~~~~~~~~~~~C~~~~~c~-~g~~q~~~~~~p~~~~~fya~S~fy~~~~-~lgl~~~~~l~~~~~~a~~~C~~~W~~~ 438 (563)
.+...|... +|. +|.+.|.+-..+ .+-+||++|.|+|+++ .+++.+++.++.+.+.++++|..+|..+
T Consensus 283 --------~~~r~~~~~-~~~~DG~h~~~ldf~~-e~~k~~g~Se~~Y~andv~~~~~~~~~~nflKsv~el~g~s~t~~ 352 (549)
T COG5371 283 --------LKPRPCSDI-PCLFDGGHKPLLDFAN-EEYKFYGDSELWYTANDVFKKGGSVAFRNFLKSVDELCGDSWTQI 352 (549)
T ss_pred --------ecCCCCccc-cccccCccccccccCC-ccceEEeehhhhhhHHHHHhhccceechhHHHHHHHHhcccchhh
Confidence 245678776 775 788875553322 2357999999999987 7899999999999999999999999644
Q ss_pred H-h-hcCC--CCchhhccCcHHHHHHHhhhccCCCCC---------ce------------EECC---CccccchHHHHHh
Q 008515 439 K-K-ATGH--QNYTGQYCFQVPYMTSLIQEALCLGDA---------EI------------IFGP---ADLSWTLGAVLVE 490 (563)
Q Consensus 439 ~-~-~~~~--~~~~~~~Cf~~~Yi~sLL~~G~gl~~~---------~i------------~~~~---~ei~WtLGa~L~e 490 (563)
- . ...+ ...++..||++.|++++||+|+..+.. .+ .+++ .+++||||-.|-.
T Consensus 353 l~~~~l~~~i~~~~k~s~~eak~~l~il~~G~d~p~~s~qcr~l~~~~L~kd~~c~spf~S~~gVeq~k~s~Tl~~~l~~ 432 (549)
T COG5371 353 LSHKELGPSIRENLKDSCFEAKWVLNILHEGFDNPLESHQCRNLADLILSKDPACHSPFCSFEGVEQTKLSWTLGTSLDI 432 (549)
T ss_pred hcCcccCcccchhhhhhhhhhhhheeeeeeccCCcccchhhhhhhhhhhccccccCCCccccccccccceeeeccccCcc
Confidence 2 1 1111 123678999999999999999976641 11 1333 4699999999743
Q ss_pred hcccc
Q 008515 491 GKYLW 495 (563)
Q Consensus 491 a~~~~ 495 (563)
-...|
T Consensus 433 y~isy 437 (549)
T COG5371 433 YNISY 437 (549)
T ss_pred eeEEE
Confidence 33333
No 6
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=99.74 E-value=2.1e-17 Score=171.38 Aligned_cols=155 Identities=25% Similarity=0.297 Sum_probs=116.9
Q ss_pred EEEEeccCceEEEEEEEecCCccCCCccccccccCCCCccchhccccccccccccccchhcc-CCCHHHHHHHHHHHHHH
Q 008515 61 VVVDCGSTGTRVNVYEWKKRGVESENLPVLVGTYPDNSTKSLLRKSSCQYHCLQTEPGLDKL-VGNASGIRASLEPLILW 139 (563)
Q Consensus 61 vVIDaGSsgtRl~Vy~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~pGLss~-~~~p~~~~~~l~~Ll~~ 139 (563)
+|||+|||+.|+.||++... .+..+.+ .. . ..++..|+... .-+++++.+.++.|.++
T Consensus 3 AvIDiGSNsirl~I~~~~~~-----~~~~l~~-~~-----~----------~vrL~~~~~~~g~i~~e~i~~~~~~l~~f 61 (300)
T TIGR03706 3 AAIDIGSNSVRLVIARGVEG-----SLQVLFN-EK-----E----------MVRLGEGLDSTGRLSEEAIERALEALKRF 61 (300)
T ss_pred EEEEecCCeeeEEEEEecCC-----cEEEhhh-ee-----e----------eeecCCCCCCCCCcCHHHHHHHHHHHHHH
Confidence 69999999999999998521 2212111 00 0 13456666443 44689999999999999
Q ss_pred HHHhCCCcCCCcccEEEEecHHHhcCChhhHHHHHHHHHHHHhcCCCcccCceeEEcCchhHHHHHHHHHHHhhhcCCCC
Q 008515 140 AEWLVPLERQEETPIFVLATAGLRRLTVEDARWVLDDVEAVVKEHSFMYEKSWIRVLSGKEEAYYGWVALNYKMGSLGNS 219 (563)
Q Consensus 140 A~~~IP~~~~~~tpv~l~ATAGmR~L~~~~~~~iL~~v~~~l~~~~f~~~~~~v~VIsG~eEg~y~WiavNyllg~l~~~ 219 (563)
++.. +.++.+.++++||++||.+. |++.+++.|++ ++|+ .++||||+|||+|.|+++...+..
T Consensus 62 ~~~~---~~~~v~~i~~vaTsa~R~A~--N~~~~~~~i~~---~tgi-----~i~visg~eEa~l~~~gv~~~~~~---- 124 (300)
T TIGR03706 62 AELL---RGFPVDEVRAVATAALRDAK--NGPEFLREAEA---ILGL-----PIEVISGEEEARLIYLGVAHTLPI---- 124 (300)
T ss_pred HHHH---HhCCCCeEEEEEcHHHHcCC--CHHHHHHHHHH---HHCC-----CeEEeChHHHHHHHHHHHHhCCCC----
Confidence 8876 67888999999999999987 99999999998 6788 799999999999999999765421
Q ss_pred CCCCceeeeecCCCceEEEEecCCCCCCCceEEEEecce
Q 008515 220 SITPTLGLLDLGGSSLQIVMEDDGTGNDEHLIRSEIGSI 258 (563)
Q Consensus 220 ~~~~t~gvlDlGG~StQIaf~~~~~~~~~~~~~~~l~~~ 258 (563)
.+..++|+||||||+++..++. ..+...+.+|..
T Consensus 125 ---~~~~v~DiGGGSte~~~~~~~~--~~~~~Sl~lG~v 158 (300)
T TIGR03706 125 ---ADGLVVDIGGGSTELILGKDFE--PGEGVSLPLGCV 158 (300)
T ss_pred ---CCcEEEEecCCeEEEEEecCCC--EeEEEEEccceE
Confidence 2348999999999999976542 223344555543
No 7
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.72 E-value=1e-16 Score=175.10 Aligned_cols=158 Identities=27% Similarity=0.319 Sum_probs=124.3
Q ss_pred EEEEeccCceEEEEEEEecCCccCCCccccccccCCCCccchhccccccccccccccchhccC-CCHHHHHHHHHHHHHH
Q 008515 61 VVVDCGSTGTRVNVYEWKKRGVESENLPVLVGTYPDNSTKSLLRKSSCQYHCLQTEPGLDKLV-GNASGIRASLEPLILW 139 (563)
Q Consensus 61 vVIDaGSsgtRl~Vy~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~pGLss~~-~~p~~~~~~l~~Ll~~ 139 (563)
++||+|||+.|+.||+... + ....+ ..++ ..+++..|+.+.. -+++++.+.++.|-.|
T Consensus 6 A~IDiGSNS~rlvV~~~~~-~----~~~~l-~~~k---------------~~vrLgegl~~~g~L~~eai~R~~~aL~~f 64 (492)
T COG0248 6 AAIDLGSNSFRLVVAEITP-G----SFQVL-FREK---------------RIVRLGEGLDATGNLSEEAIERALSALKRF 64 (492)
T ss_pred EEEEecCCeEEEEEEeccC-C----ccchh-hhhh---------------hheehhcCccccCCcCHHHHHHHHHHHHHH
Confidence 7999999999999999853 1 22222 2111 0146788888874 4788999999999999
Q ss_pred HHHhCCCcCCCcccEEEEecHHHhcCChhhHHHHHHHHHHHHhcCCCcccCceeEEcCchhHHHHHHHHHHHhhhcCCCC
Q 008515 140 AEWLVPLERQEETPIFVLATAGLRRLTVEDARWVLDDVEAVVKEHSFMYEKSWIRVLSGKEEAYYGWVALNYKMGSLGNS 219 (563)
Q Consensus 140 A~~~IP~~~~~~tpv~l~ATAGmR~L~~~~~~~iL~~v~~~l~~~~f~~~~~~v~VIsG~eEg~y~WiavNyllg~l~~~ 219 (563)
++.. +.++...|+++||+++|.++ |++++++.+++ ..|+ .|+||||+|||+|+++||-..++.
T Consensus 65 ~e~~---~~~~~~~v~~vATsA~R~A~--N~~eFl~rv~~---~~G~-----~ievIsGeeEArl~~lGv~~~~~~---- 127 (492)
T COG0248 65 AELL---DGFGAEEVRVVATSALRDAP--NGDEFLARVEK---ELGL-----PIEVISGEEEARLIYLGVASTLPR---- 127 (492)
T ss_pred HHHH---hhCCCCEEEEehhHHHHcCC--CHHHHHHHHHH---HhCC-----ceEEeccHHHHHHHHHHHHhcCCC----
Confidence 9987 77888899999999999999 99999999999 5578 799999999999999999876643
Q ss_pred CCCCceeeeecCCCceEEEEecCCCCCCCceEEEEecceeE
Q 008515 220 SITPTLGLLDLGGSSLQIVMEDDGTGNDEHLIRSEIGSIEH 260 (563)
Q Consensus 220 ~~~~t~gvlDlGG~StQIaf~~~~~~~~~~~~~~~l~~~~~ 260 (563)
.....++|+||||||+++..+... .....+.+|..++
T Consensus 128 --~~~~lv~DIGGGStEl~~g~~~~~--~~~~Sl~~G~v~l 164 (492)
T COG0248 128 --KGDGLVIDIGGGSTELVLGDNFEI--GLLISLPLGCVRL 164 (492)
T ss_pred --CCCEEEEEecCCeEEEEEecCCcc--ceeEEeecceEEe
Confidence 356789999999999999874332 2344556776543
No 8
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=99.69 E-value=3e-16 Score=173.15 Aligned_cols=159 Identities=22% Similarity=0.248 Sum_probs=121.0
Q ss_pred eEEEEEEeccCceEEEEEEEecCCccCCCccccccccCCCCccchhccccccccccccccchhcc-CCCHHHHHHHHHHH
Q 008515 58 YYTVVVDCGSTGTRVNVYEWKKRGVESENLPVLVGTYPDNSTKSLLRKSSCQYHCLQTEPGLDKL-VGNASGIRASLEPL 136 (563)
Q Consensus 58 ~Y~vVIDaGSsgtRl~Vy~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~pGLss~-~~~p~~~~~~l~~L 136 (563)
.+.+|||+|||+.|+.||+.... .+.. +...+ . ..+++.|+... .-+++++.+.++.|
T Consensus 6 ~~~A~IDIGSNSirL~I~~~~~~-----~~~~-l~~~k-----~----------~vrLg~g~~~~g~Ls~e~i~r~~~~L 64 (496)
T PRK11031 6 SLYAAIDLGSNSFHMLVVREVAG-----SIQT-LARIK-----R----------KVRLAAGLDSDNALSNEAMERGWQCL 64 (496)
T ss_pred CEEEEEEccccceeEEEEEecCC-----ceEE-eecce-----e----------EEEccCCcCcCCCcCHHHHHHHHHHH
Confidence 34579999999999999997431 2222 21110 0 13466677543 24689999999999
Q ss_pred HHHHHHhCCCcCCCcccEEEEecHHHhcCChhhHHHHHHHHHHHHhcCCCcccCceeEEcCchhHHHHHHHHHHHhhhcC
Q 008515 137 ILWAEWLVPLERQEETPIFVLATAGLRRLTVEDARWVLDDVEAVVKEHSFMYEKSWIRVLSGKEEAYYGWVALNYKMGSL 216 (563)
Q Consensus 137 l~~A~~~IP~~~~~~tpv~l~ATAGmR~L~~~~~~~iL~~v~~~l~~~~f~~~~~~v~VIsG~eEg~y~WiavNyllg~l 216 (563)
-+|++.. +.++.+.+.++||+++|.+. |+++|++.|++ ++|+ .|+||||+|||.|.+++|-..+.
T Consensus 65 ~~F~~~~---~~~~v~~i~~vATsAvReA~--N~~~fl~~i~~---~tGl-----~ievIsG~eEA~l~~~gv~~~l~-- 129 (496)
T PRK11031 65 RLFAERL---QDIPPSQIRVVATATLRLAV--NADEFLAKAQE---ILGC-----PVQVISGEEEARLIYQGVAHTTG-- 129 (496)
T ss_pred HHHHHHH---HhCCCCeEEEEEeHHHHcCc--CHHHHHHHHHH---HHCC-----CeEEeCHHHHHHHHHHhhhhccC--
Confidence 9999876 67888999999999999998 99999999999 7789 79999999999999999875432
Q ss_pred CCCCCCCceeeeecCCCceEEEEecCCCCCCCceEEEEecce
Q 008515 217 GNSSITPTLGLLDLGGSSLQIVMEDDGTGNDEHLIRSEIGSI 258 (563)
Q Consensus 217 ~~~~~~~t~gvlDlGG~StQIaf~~~~~~~~~~~~~~~l~~~ 258 (563)
..++..++|+||||||+++..+.. ..+...+.+|..
T Consensus 130 ----~~~~~lviDIGGGStEl~~~~~~~--~~~~~Sl~lG~v 165 (496)
T PRK11031 130 ----GADQRLVVDIGGASTELVTGTGAQ--ATSLFSLSMGCV 165 (496)
T ss_pred ----CCCCEEEEEecCCeeeEEEecCCc--eeeeeEEeccch
Confidence 123568999999999999876543 233445666654
No 9
>PRK10854 exopolyphosphatase; Provisional
Probab=99.67 E-value=4.8e-16 Score=172.24 Aligned_cols=160 Identities=20% Similarity=0.253 Sum_probs=120.6
Q ss_pred eEEEEEEeccCceEEEEEEEecCCccCCCccccccccCCCCccchhccccccccccccccchhccC-CCHHHHHHHHHHH
Q 008515 58 YYTVVVDCGSTGTRVNVYEWKKRGVESENLPVLVGTYPDNSTKSLLRKSSCQYHCLQTEPGLDKLV-GNASGIRASLEPL 136 (563)
Q Consensus 58 ~Y~vVIDaGSsgtRl~Vy~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~pGLss~~-~~p~~~~~~l~~L 136 (563)
...+|||+|||+.|+.||+.... .+.. ++..+ . ..+++.|+.... -+++++.+.++.|
T Consensus 11 ~~~A~IDIGSNSirL~I~e~~~~-----~~~~-i~~~k-----~----------~vrLg~g~~~~g~Ls~e~~~r~~~~L 69 (513)
T PRK10854 11 QEFAAVDLGSNSFHMVIARVVDG-----AMQI-IGRLK-----Q----------RVHLADGLDSDNMLSEEAMERGLNCL 69 (513)
T ss_pred CEEEEEEeccchheEEEEEecCC-----cEEE-eeeee-----E----------EEECCCCcCCCCCcCHHHHHHHHHHH
Confidence 45579999999999999997431 2222 22110 0 134566775542 4689999999999
Q ss_pred HHHHHHhCCCcCCCcccEEEEecHHHhcCChhhHHHHHHHHHHHHhcCCCcccCceeEEcCchhHHHHHHHHHHHhhhcC
Q 008515 137 ILWAEWLVPLERQEETPIFVLATAGLRRLTVEDARWVLDDVEAVVKEHSFMYEKSWIRVLSGKEEAYYGWVALNYKMGSL 216 (563)
Q Consensus 137 l~~A~~~IP~~~~~~tpv~l~ATAGmR~L~~~~~~~iL~~v~~~l~~~~f~~~~~~v~VIsG~eEg~y~WiavNyllg~l 216 (563)
-+|++.. +.++.+.+.++||++||.+. |++++++.|++ .+|+ .|+||||+|||+|.+++|-..+.
T Consensus 70 ~~F~~~~---~~~~v~~v~~vATsAlReA~--N~~~fl~~i~~---~tGl-----~i~vIsG~EEA~l~~~gv~~~l~-- 134 (513)
T PRK10854 70 SLFAERL---QGFSPANVCIVGTHTLRQAL--NATDFLKRAEK---VIPY-----PIEIISGNEEARLIFMGVEHTQP-- 134 (513)
T ss_pred HHHHHHH---HhCCCCeEEEEehHHHHcCc--CHHHHHHHHHH---HHCC-----CeEEeCHHHHHHHHHhhhhcccC--
Confidence 9999876 66788899999999999998 99999999999 7788 79999999999999999875442
Q ss_pred CCCCCCCceeeeecCCCceEEEEecCCCCCCCceEEEEeccee
Q 008515 217 GNSSITPTLGLLDLGGSSLQIVMEDDGTGNDEHLIRSEIGSIE 259 (563)
Q Consensus 217 ~~~~~~~t~gvlDlGG~StQIaf~~~~~~~~~~~~~~~l~~~~ 259 (563)
..++..++|+||||||+++..++.. .+...+.+|...
T Consensus 135 ----~~~~~lvvDIGGGStEl~~~~~~~~--~~~~S~~lG~vr 171 (513)
T PRK10854 135 ----EKGRKLVIDIGGGSTELVIGENFEP--ILVESRRMGCVS 171 (513)
T ss_pred ----CCCCeEEEEeCCCeEEEEEecCCCe--eEeEEEecceee
Confidence 1245689999999999999865431 233344566543
No 10
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=99.39 E-value=1.5e-12 Score=133.91 Aligned_cols=110 Identities=21% Similarity=0.302 Sum_probs=89.1
Q ss_pred ccccchhcc-CCCHHHHHHHHHHHHHHHHHhCCCcCCCcccEEEEecHHHhcCChhhHHHHHHHHHHHHhcCCCcccCce
Q 008515 114 QTEPGLDKL-VGNASGIRASLEPLILWAEWLVPLERQEETPIFVLATAGLRRLTVEDARWVLDDVEAVVKEHSFMYEKSW 192 (563)
Q Consensus 114 ~~~pGLss~-~~~p~~~~~~l~~Ll~~A~~~IP~~~~~~tpv~l~ATAGmR~L~~~~~~~iL~~v~~~l~~~~f~~~~~~ 192 (563)
++..|+... .-.++++.+.++.|-++++.. +.++.+.++++||++||.+. |++++++.|++ ++|+ .
T Consensus 21 rLg~~~~~~g~i~~e~i~r~~~~L~~f~~~~---~~~~v~~i~~vATsA~R~A~--N~~~~~~~i~~---~tGi-----~ 87 (285)
T PF02541_consen 21 RLGEGVFETGRISEEAIERAIDALKRFKEIL---KDYGVEKIRAVATSALREAK--NSDEFLDRIKK---ETGI-----D 87 (285)
T ss_dssp -TTTTHHHHSSB-HHHHHHHHHHHHHHHHHH---HHTTGSEEEEEEEHHHHHST--THHHHHHHHHH---HHSS------
T ss_pred EcccccccCCCcCHHHHHHHHHHHHHHHHHH---HHCCCCEEEEEhhHHHHhCc--CHHHHHHHHHH---HhCC-----c
Confidence 455565433 346788889999998888876 67889999999999999999 99999999999 7788 7
Q ss_pred eEEcCchhHHHHHHHHHHHhhhcCCCCCCCCceeeeecCCCceEEEEecC
Q 008515 193 IRVLSGKEEAYYGWVALNYKMGSLGNSSITPTLGLLDLGGSSLQIVMEDD 242 (563)
Q Consensus 193 v~VIsG~eEg~y~WiavNyllg~l~~~~~~~t~gvlDlGG~StQIaf~~~ 242 (563)
++||||+|||+|++.++-.-+ . ..++..++|+||||||+++..+
T Consensus 88 i~iIsgeeEa~l~~~gv~~~l--~----~~~~~lviDIGGGStEl~~~~~ 131 (285)
T PF02541_consen 88 IEIISGEEEARLSFLGVLSSL--P----PDKNGLVIDIGGGSTELILFEN 131 (285)
T ss_dssp EEEE-HHHHHHHHHHHHHHHS--T----TTSSEEEEEEESSEEEEEEEET
T ss_pred eEEecHHHHHHHHHHHHHhhc--c----ccCCEEEEEECCCceEEEEEEC
Confidence 999999999999999996544 1 2356789999999999998754
No 11
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=97.10 E-value=0.0041 Score=63.72 Aligned_cols=131 Identities=23% Similarity=0.187 Sum_probs=73.5
Q ss_pred CceEEEEEEeccCceEEEEEEEecCCccCCCccccccccCCCCccchhccccccccccccccchhccCCCHHHHHHHHHH
Q 008515 56 GSYYTVVVDCGSTGTRVNVYEWKKRGVESENLPVLVGTYPDNSTKSLLRKSSCQYHCLQTEPGLDKLVGNASGIRASLEP 135 (563)
Q Consensus 56 ~~~Y~vVIDaGSsgtRl~Vy~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~pGLss~~~~p~~~~~~l~~ 135 (563)
...+.++||.|||..|+.|.+.... +.-.-..+ + .-++.|. ..|.+.+.+.|+.
T Consensus 22 ~~~~~~~iDiGSssi~~vv~~~~~~-------~~~~~~~~---~-------------~~vr~G~---i~di~~a~~~i~~ 75 (267)
T PRK15080 22 ESPLKVGVDLGTANIVLAVLDEDGQ-------PVAGALEW---A-------------DVVRDGI---VVDFIGAVTIVRR 75 (267)
T ss_pred CCCEEEEEEccCceEEEEEEcCCCC-------EEEEEecc---c-------------cccCCCE---EeeHHHHHHHHHH
Confidence 3578899999999999999754211 11000000 0 1122332 3457889999999
Q ss_pred HHHHHHHhCCCcCCCcccEEEEecHHHhcCCh-hhHHHHHHHHHHHHhcCCCcccCceeE-EcCchhHHHHHHHHHHHhh
Q 008515 136 LILWAEWLVPLERQEETPIFVLATAGLRRLTV-EDARWVLDDVEAVVKEHSFMYEKSWIR-VLSGKEEAYYGWVALNYKM 213 (563)
Q Consensus 136 Ll~~A~~~IP~~~~~~tpv~l~ATAGmR~L~~-~~~~~iL~~v~~~l~~~~f~~~~~~v~-VIsG~eEg~y~WiavNyll 213 (563)
+++.|++..... +.-.+| +++--.. .++..+. +..++.|+ .+. ++++.. |. .+.+
T Consensus 76 ~~~~ae~~~g~~------i~~v~~-~vp~~~~~~~~~~~~----~~~~~aGl-----~~~~ii~e~~-A~------a~~~ 132 (267)
T PRK15080 76 LKATLEEKLGRE------LTHAAT-AIPPGTSEGDPRAII----NVVESAGL-----EVTHVLDEPT-AA------AAVL 132 (267)
T ss_pred HHHHHHHHhCCC------cCeEEE-EeCCCCCchhHHHHH----HHHHHcCC-----ceEEEechHH-HH------HHHh
Confidence 999998763221 222233 3333221 1344444 44446788 445 666433 22 1222
Q ss_pred hcCCCCCCCCceeeeecCCCceEEEEecC
Q 008515 214 GSLGNSSITPTLGLLDLGGSSLQIVMEDD 242 (563)
Q Consensus 214 g~l~~~~~~~t~gvlDlGG~StQIaf~~~ 242 (563)
+. +...++|||||+|+++...+
T Consensus 133 ~~-------~~~~vvDIGggtt~i~v~~~ 154 (267)
T PRK15080 133 GI-------DNGAVVDIGGGTTGISILKD 154 (267)
T ss_pred CC-------CCcEEEEeCCCcEEEEEEEC
Confidence 11 12579999999999987643
No 12
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=91.05 E-value=2.8 Score=45.81 Aligned_cols=63 Identities=21% Similarity=0.224 Sum_probs=41.5
Q ss_pred eEEEEEEeccCceEEEEEEEecCCccCCCccccccccCCCCccchhccccccccccccccchhc-cCCCHHHHHHHHHHH
Q 008515 58 YYTVVVDCGSTGTRVNVYEWKKRGVESENLPVLVGTYPDNSTKSLLRKSSCQYHCLQTEPGLDK-LVGNASGIRASLEPL 136 (563)
Q Consensus 58 ~Y~vVIDaGSsgtRl~Vy~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~pGLss-~~~~p~~~~~~l~~L 136 (563)
++.+.||+||+..++.|-++..++ .+ .++.- ... -..|+.. ...|.+++.++|+.+
T Consensus 8 ~~i~~lDIGsskv~~vv~~~~~~~----~~-~i~g~-----------------~~~-~s~gi~~G~I~d~~~~~~aI~~a 64 (420)
T PRK09472 8 KLVVGLEIGTAKVAALVGEVLPDG----MV-NIIGV-----------------GSC-PSRGMDKGGVNDLESVVKCVQRA 64 (420)
T ss_pred CEEEEEEcccceEEEEEEEEcCCC----CE-EEEEE-----------------EEc-cCCCccCCEEEcHHHHHHHHHHH
Confidence 566899999999999998875321 11 22210 000 0223333 245789999999999
Q ss_pred HHHHHHh
Q 008515 137 ILWAEWL 143 (563)
Q Consensus 137 l~~A~~~ 143 (563)
++.|++.
T Consensus 65 v~~ae~~ 71 (420)
T PRK09472 65 IDQAELM 71 (420)
T ss_pred HHHHHHH
Confidence 9999975
No 13
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=88.85 E-value=4.3 Score=43.25 Aligned_cols=93 Identities=16% Similarity=0.128 Sum_probs=49.9
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCcCCCcccEEEEecHHHhcCChhhHHHHHHHHHHHHhcCCCcccCceeEEcCchhHHH
Q 008515 124 GNASGIRASLEPLILWAEWLVPLERQEETPIFVLATAGLRRLTVEDARWVLDDVEAVVKEHSFMYEKSWIRVLSGKEEAY 203 (563)
Q Consensus 124 ~~p~~~~~~l~~Ll~~A~~~IP~~~~~~tpv~l~ATAGmR~L~~~~~~~iL~~v~~~l~~~~f~~~~~~v~VIsG~eEg~ 203 (563)
.|-+.+...++.+++..... .....|+.+-- .. ..+...++++.+.+-+ ..++. .+-+++. ++
T Consensus 72 ~d~~~~e~i~~~~~~~~l~~----~~~~~~vll~~-p~--~~~~~~r~~~~e~lfE---~~~~~----~v~~~~~---~~ 134 (373)
T smart00268 72 ENWDDMEKIWDYTFFNELRV----EPEEHPVLLTE-PP--MNPKSNREKILEIMFE---TFNFP----ALYIAIQ---AV 134 (373)
T ss_pred eCHHHHHHHHHHHHhhhcCC----CCccCeeEEec-CC--CCCHHHHHHHHHHhhc---cCCCC----eEEEecc---HH
Confidence 35566666666665542222 12445666621 11 1233455666666554 34441 3555543 33
Q ss_pred HHHHHHHHhhhcCCCCCCCCceeeeecCCCceEEEEecCCC
Q 008515 204 YGWVALNYKMGSLGNSSITPTLGLLDLGGSSLQIVMEDDGT 244 (563)
Q Consensus 204 y~WiavNyllg~l~~~~~~~t~gvlDlGG~StQIaf~~~~~ 244 (563)
.+-++ .| ..+..|+|+|+++|+|+-..++.
T Consensus 135 ~a~~~----~g-------~~~~lVVDiG~~~t~v~pv~~G~ 164 (373)
T smart00268 135 LSLYA----SG-------RTTGLVIDSGDGVTHVVPVVDGY 164 (373)
T ss_pred HHHHh----CC-------CCEEEEEecCCCcceEEEEECCE
Confidence 33222 22 35778999999999999776553
No 14
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=88.77 E-value=5.2 Score=42.60 Aligned_cols=105 Identities=13% Similarity=0.085 Sum_probs=54.4
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCcCCCcccEEEEecHHHhcCChhhHHHHHHHHHHHHhcCCCcccCceeEEcCchhHHHH
Q 008515 125 NASGIRASLEPLILWAEWLVPLERQEETPIFVLATAGLRRLTVEDARWVLDDVEAVVKEHSFMYEKSWIRVLSGKEEAYY 204 (563)
Q Consensus 125 ~p~~~~~~l~~Ll~~A~~~IP~~~~~~tpv~l~ATAGmR~L~~~~~~~iL~~v~~~l~~~~f~~~~~~v~VIsG~eEg~y 204 (563)
|.+.+.+.++.+++..... + ....|+.+. ... ..+...++.+.+.+-+ ..++. .+.+++..-=+.|
T Consensus 73 d~~~~e~~~~~~~~~~l~~-~---~~~~~vvl~-~p~--~~~~~~r~~~~e~lfe---~~~~~----~v~~~~~~~~a~~ 138 (371)
T cd00012 73 DWDDMEKIWDHLFFNELKV-N---PEEHPVLLT-EPP--LNPKSNREKTTEIMFE---TFNVP----ALYVAIQAVLSLY 138 (371)
T ss_pred CHHHHHHHHHHHHHHhcCC-C---CCCCceEEe-cCC--CCCHHHHHHHHHHhhc---cCCCC----EEEEechHHHHHH
Confidence 5555555555555443222 1 234566653 222 2333455555555544 34441 3555554333333
Q ss_pred HHHHHHHhhhcCCCCCCCCceeeeecCCCceEEEEecCCCCCCCceEEEEecc
Q 008515 205 GWVALNYKMGSLGNSSITPTLGLLDLGGSSLQIVMEDDGTGNDEHLIRSEIGS 257 (563)
Q Consensus 205 ~WiavNyllg~l~~~~~~~t~gvlDlGG~StQIaf~~~~~~~~~~~~~~~l~~ 257 (563)
+ .| ..+..|+|+|+++|.|+-..++........++.+||
T Consensus 139 ~-------~g-------~~~~lVVDiG~~~t~i~pv~~G~~~~~~~~~~~~GG 177 (371)
T cd00012 139 A-------SG-------RTTGLVVDSGDGVTHVVPVYDGYVLPHAIKRLDLAG 177 (371)
T ss_pred h-------cC-------CCeEEEEECCCCeeEEEEEECCEEchhhheeccccH
Confidence 2 22 257789999999999997766543333333444444
No 15
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=87.94 E-value=12 Score=39.60 Aligned_cols=97 Identities=14% Similarity=0.132 Sum_probs=56.7
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCcCCCcccEEEEecHHHhcCChhhHHHHHHHHHHHHhcCCCcccCceeEEcCchhHHH
Q 008515 124 GNASGIRASLEPLILWAEWLVPLERQEETPIFVLATAGLRRLTVEDARWVLDDVEAVVKEHSFMYEKSWIRVLSGKEEAY 203 (563)
Q Consensus 124 ~~p~~~~~~l~~Ll~~A~~~IP~~~~~~tpv~l~ATAGmR~L~~~~~~~iL~~v~~~l~~~~f~~~~~~v~VIsG~eEg~ 203 (563)
.|.+.++..|+.+++.|.+.+-.. ...|-.+++... ..+..+++++.++++. .++ ..+.+|+..-=+.
T Consensus 72 ~d~d~~~~~l~~~~~~~~~~l~~~--~~~~~vvitvP~--~~~~~~R~~l~~a~~~----ag~----~~~~li~ep~Aaa 139 (335)
T PRK13929 72 ADYDMTTDLLKQIMKKAGKNIGMT--FRKPNVVVCTPS--GSTAVERRAISDAVKN----CGA----KNVHLIEEPVAAA 139 (335)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCC--CCCCeEEEEcCC--CCCHHHHHHHHHHHHH----cCC----CeeEeecCHHHHH
Confidence 466778888888888876543111 111333344332 3455678888776654 455 2466766553333
Q ss_pred HHHHHHHHhhhcCCCCCCCCceeeeecCCCceEEEEec
Q 008515 204 YGWVALNYKMGSLGNSSITPTLGLLDLGGSSLQIVMED 241 (563)
Q Consensus 204 y~WiavNyllg~l~~~~~~~t~gvlDlGG~StQIaf~~ 241 (563)
++ .|. .. ....++.++|+|||+|+++...
T Consensus 140 ~~-------~g~-~~-~~~~~~lvvDiG~gtt~v~vi~ 168 (335)
T PRK13929 140 IG-------ADL-PV-DEPVANVVVDIGGGTTEVAIIS 168 (335)
T ss_pred Hh-------cCC-Cc-CCCceEEEEEeCCCeEEEEEEE
Confidence 32 221 11 1235678999999999999864
No 16
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=87.68 E-value=3.6 Score=43.20 Aligned_cols=93 Identities=14% Similarity=0.090 Sum_probs=49.9
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCcCCCcccEEEEecHHHhcCChhhHHHHHHHHHHHHhcCCCcccCceeEEcCchhHHHH
Q 008515 125 NASGIRASLEPLILWAEWLVPLERQEETPIFVLATAGLRRLTVEDARWVLDDVEAVVKEHSFMYEKSWIRVLSGKEEAYY 204 (563)
Q Consensus 125 ~p~~~~~~l~~Ll~~A~~~IP~~~~~~tpv~l~ATAGmR~L~~~~~~~iL~~v~~~l~~~~f~~~~~~v~VIsG~eEg~y 204 (563)
|.+.+.+.++.+++.+.+. +.. .|..+.+... ..+..+++++.+.++ ..++ ..+.+++...=+.|
T Consensus 74 d~~~~~~ll~~~~~~~~~~-~~~----~~~~vi~vP~--~~~~~~r~~~~~a~~----~ag~----~~~~li~ep~aaa~ 138 (334)
T PRK13927 74 DFDVTEKMLKYFIKKVHKN-FRP----SPRVVICVPS--GITEVERRAVRESAL----GAGA----REVYLIEEPMAAAI 138 (334)
T ss_pred CHHHHHHHHHHHHHHHhhc-cCC----CCcEEEEeCC--CCCHHHHHHHHHHHH----HcCC----CeeccCCChHHHHH
Confidence 5566777777777666544 221 2444444332 233333444333333 4455 24666665544444
Q ss_pred HHHHHHHhhhcCCCCCCCCceeeeecCCCceEEEEec
Q 008515 205 GWVALNYKMGSLGNSSITPTLGLLDLGGSSLQIVMED 241 (563)
Q Consensus 205 ~WiavNyllg~l~~~~~~~t~gvlDlGG~StQIaf~~ 241 (563)
++ |.- ......+.++|+|||.|+++...
T Consensus 139 ~~-------g~~--~~~~~~~lvvDiGggttdvs~v~ 166 (334)
T PRK13927 139 GA-------GLP--VTEPTGSMVVDIGGGTTEVAVIS 166 (334)
T ss_pred Hc-------CCc--ccCCCeEEEEEeCCCeEEEEEEe
Confidence 32 221 11223468999999999999753
No 17
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=87.41 E-value=10 Score=40.49 Aligned_cols=62 Identities=21% Similarity=0.237 Sum_probs=40.8
Q ss_pred EEEEeccCceEEEEEEEecCCccCCCccccccccCCCCccchhccccccccccccccchhcc-CCCHHHHHHHHHHHHHH
Q 008515 61 VVVDCGSTGTRVNVYEWKKRGVESENLPVLVGTYPDNSTKSLLRKSSCQYHCLQTEPGLDKL-VGNASGIRASLEPLILW 139 (563)
Q Consensus 61 vVIDaGSsgtRl~Vy~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~pGLss~-~~~p~~~~~~l~~Ll~~ 139 (563)
+.||.||+..++.+-+...++ . ..++.- . ..-.+|+..- ..|++++.++|+.+++.
T Consensus 3 ~~lDIGs~~ik~vv~~~~~~~----~-~~i~~~-----------------~-~~~~~gi~~G~I~d~~~~~~~i~~al~~ 59 (371)
T TIGR01174 3 VGLDIGTSKICAIVAEVLEDG----E-LNIIGV-----------------G-THPSRGIKKGVINDIEAAVGSIQRAIEA 59 (371)
T ss_pred EEEEeccceEEEEEEEEcCCC----C-EEEEEE-----------------E-EecCCCccCcEEEcHHHHHHHHHHHHHH
Confidence 689999999999998875321 1 122210 0 0012244443 45789999999999999
Q ss_pred HHHhCC
Q 008515 140 AEWLVP 145 (563)
Q Consensus 140 A~~~IP 145 (563)
|++..+
T Consensus 60 ~e~~~~ 65 (371)
T TIGR01174 60 AELMAG 65 (371)
T ss_pred HHHHhC
Confidence 987754
No 18
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=86.93 E-value=3.7 Score=41.37 Aligned_cols=91 Identities=18% Similarity=0.125 Sum_probs=52.4
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCcCCCcccEEEEecHHHhcCChhhHHHHHHHHHHHHhcCCCcccCceeEEcCchhHHH
Q 008515 124 GNASGIRASLEPLILWAEWLVPLERQEETPIFVLATAGLRRLTVEDARWVLDDVEAVVKEHSFMYEKSWIRVLSGKEEAY 203 (563)
Q Consensus 124 ~~p~~~~~~l~~Ll~~A~~~IP~~~~~~tpv~l~ATAGmR~L~~~~~~~iL~~v~~~l~~~~f~~~~~~v~VIsG~eEg~ 203 (563)
.|.+.+...|+.|.+.|+..+. ++.+.+.+--.+.+. +.+++++.+.++ ..|+. .+.++ .|..
T Consensus 37 ~d~~~~~~~l~~l~~~a~~~~g---~~~~~vvisVP~~~~---~~~r~a~~~a~~----~aGl~----~~~li---~ep~ 99 (239)
T TIGR02529 37 VDFLGAVEIVRRLKDTLEQKLG---IELTHAATAIPPGTI---EGDPKVIVNVIE----SAGIE----VLHVL---DEPT 99 (239)
T ss_pred EEhHHHHHHHHHHHHHHHHHhC---CCcCcEEEEECCCCC---cccHHHHHHHHH----HcCCc----eEEEe---ehHH
Confidence 4678999999999999887642 223333333233332 235555555544 45772 23333 3333
Q ss_pred HHHHHHHHhhhcCCCCCCCCceeeeecCCCceEEEEecC
Q 008515 204 YGWVALNYKMGSLGNSSITPTLGLLDLGGSSLQIVMEDD 242 (563)
Q Consensus 204 y~WiavNyllg~l~~~~~~~t~gvlDlGG~StQIaf~~~ 242 (563)
=++++. + .....++|+||++|.++....
T Consensus 100 Aaa~~~----~-------~~~~~vvDiGggtt~i~i~~~ 127 (239)
T TIGR02529 100 AAAAVL----Q-------IKNGAVVDVGGGTTGISILKK 127 (239)
T ss_pred HHHHHh----c-------CCCcEEEEeCCCcEEEEEEEC
Confidence 333331 1 113589999999999987543
No 19
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=85.61 E-value=4.7 Score=44.61 Aligned_cols=160 Identities=18% Similarity=0.141 Sum_probs=77.6
Q ss_pred eEEEEEEeccCceEEEEEEEecC-CccCCCccccccccCCCCccchhccccccccccccccchhccCCCHHHHHHHHHHH
Q 008515 58 YYTVVVDCGSTGTRVNVYEWKKR-GVESENLPVLVGTYPDNSTKSLLRKSSCQYHCLQTEPGLDKLVGNASGIRASLEPL 136 (563)
Q Consensus 58 ~Y~vVIDaGSsgtRl~Vy~~~~~-~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~pGLss~~~~p~~~~~~l~~L 136 (563)
-..|-||+|+|+|.+.+-+..-. ......+|.+.- .+. .+...+. .-..|=++.-.-|.+++++.++.=
T Consensus 6 i~SVGIDIGTsTTqlvfSrl~l~n~a~~~~vpr~~I----~dk-ev~yrS~-----i~fTPl~~~~~ID~~~i~~~V~~e 75 (475)
T PRK10719 6 LLSVGIDIGTTTTQVIFSRLELENRASVFQVPRIEI----IDK-EIIYRSP-----IYFTPLLKQGEIDEAAIKELIEEE 75 (475)
T ss_pred EEEEEEeccCceEEEEEEEEEEecccccccCceEEE----eee-EEEEecC-----ceecCCCCCccccHHHHHHHHHHH
Confidence 45688999999999999887542 112223343211 111 1111111 113455555556667776666543
Q ss_pred HHHHHHhCCCc-CCCcccEEEEecHHHhcCChhhHHHHHHHHHHHHhcCCCcccCceeEEcCchhHHHHHHHHHHHhhhc
Q 008515 137 ILWAEWLVPLE-RQEETPIFVLATAGLRRLTVEDARWVLDDVEAVVKEHSFMYEKSWIRVLSGKEEAYYGWVALNYKMGS 215 (563)
Q Consensus 137 l~~A~~~IP~~-~~~~tpv~l~ATAGmR~L~~~~~~~iL~~v~~~l~~~~f~~~~~~v~VIsG~eEg~y~WiavNyllg~ 215 (563)
.+.| -|.++ -.....|.-..|+.++. ..+.++.+-... -+|.+-.... +-|++++=+|.-.. .
T Consensus 76 y~~A--gi~~~die~~ahIITg~~~~~~N-----l~~~v~~~~~~~--gdfVVA~AG~-----~le~iva~~ASg~a--v 139 (475)
T PRK10719 76 YQKA--GIAPESIDSGAVIITGETARKEN-----AREVVMALSGSA--GDFVVATAGP-----DLESIIAGKGAGAQ--T 139 (475)
T ss_pred HHHc--CCCHHHccccEEEEEechhHHHH-----HHHHHHHhcccc--cceeeeccCc-----cHHHhhhHHHhhHH--H
Confidence 3333 23222 22233344444444333 334444332211 1232111111 23555443333221 1
Q ss_pred CCCCCCCCceeeeecCCCceEEEEecCCC
Q 008515 216 LGNSSITPTLGLLDLGGSSLQIVMEDDGT 244 (563)
Q Consensus 216 l~~~~~~~t~gvlDlGG~StQIaf~~~~~ 244 (563)
+. +.+...+.++|||||.|.++...++.
T Consensus 140 Ls-eEke~gVa~IDIGgGTT~iaVf~~G~ 167 (475)
T PRK10719 140 LS-EERNTRVLNIDIGGGTANYALFDAGK 167 (475)
T ss_pred hh-hhccCceEEEEeCCCceEEEEEECCE
Confidence 21 23445678999999999999877653
No 20
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=84.84 E-value=10 Score=39.68 Aligned_cols=95 Identities=14% Similarity=0.078 Sum_probs=48.3
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCcCCCcccEEEEecHHHhcCChhhHHHHHHHHHHHHhcCCCcccCceeEEcCchhHHHH
Q 008515 125 NASGIRASLEPLILWAEWLVPLERQEETPIFVLATAGLRRLTVEDARWVLDDVEAVVKEHSFMYEKSWIRVLSGKEEAYY 204 (563)
Q Consensus 125 ~p~~~~~~l~~Ll~~A~~~IP~~~~~~tpv~l~ATAGmR~L~~~~~~~iL~~v~~~l~~~~f~~~~~~v~VIsG~eEg~y 204 (563)
|.+.+.+.++.+++.+....+ ....++. .+... ..+..+++.+.+. ++..++ ..+.+++ |..-
T Consensus 77 d~~~~e~ll~~~~~~~~~~~~---~~~~~vv-it~P~--~~~~~~r~~~~~~----~e~~g~----~~~~lv~---ep~A 139 (335)
T PRK13930 77 DFEATEAMLRYFIKKARGRRF---FRKPRIV-ICVPS--GITEVERRAVREA----AEHAGA----REVYLIE---EPMA 139 (335)
T ss_pred CHHHHHHHHHHHHHHHhhccc---CCCCcEE-EEECC--CCCHHHHHHHHHH----HHHcCC----CeEEecc---cHHH
Confidence 556667777777765554322 1123333 33222 2333344444443 334565 2467775 3322
Q ss_pred HHHHHHHhhhcCCCCCCCCceeeeecCCCceEEEEecC
Q 008515 205 GWVALNYKMGSLGNSSITPTLGLLDLGGSSLQIVMEDD 242 (563)
Q Consensus 205 ~WiavNyllg~l~~~~~~~t~gvlDlGG~StQIaf~~~ 242 (563)
+-|..|.- .....+..++|+|||.|+++....
T Consensus 140 ----Aa~a~g~~--~~~~~~~lVvDiG~gttdvs~v~~ 171 (335)
T PRK13930 140 ----AAIGAGLP--VTEPVGNMVVDIGGGTTEVAVISL 171 (335)
T ss_pred ----HHHhcCCC--cCCCCceEEEEeCCCeEEEEEEEe
Confidence 22222221 112235689999999999997653
No 21
>PTZ00281 actin; Provisional
Probab=83.22 E-value=21 Score=38.32 Aligned_cols=35 Identities=17% Similarity=0.187 Sum_probs=23.9
Q ss_pred CceeeeecCCCceEEEEecCCCCCCCceEEEEecc
Q 008515 223 PTLGLLDLGGSSLQIVMEDDGTGNDEHLIRSEIGS 257 (563)
Q Consensus 223 ~t~gvlDlGG~StQIaf~~~~~~~~~~~~~~~l~~ 257 (563)
.|..|+|+|-++|+|+=.-++........++.+||
T Consensus 149 ~tglVVDiG~~~t~v~PV~dG~~~~~~~~~~~~GG 183 (376)
T PTZ00281 149 TTGIVMDSGDGVSHTVPIYEGYALPHAILRLDLAG 183 (376)
T ss_pred ceEEEEECCCceEEEEEEEecccchhheeeccCcH
Confidence 57789999999999986656544333444445554
No 22
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=83.00 E-value=9.6 Score=40.73 Aligned_cols=93 Identities=12% Similarity=0.079 Sum_probs=48.2
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCcCCCcccEEEEecHHHhcCChhhHHHHHHHHHHHHhcCCCcccCceeEEcCchhHHH
Q 008515 124 GNASGIRASLEPLILWAEWLVPLERQEETPIFVLATAGLRRLTVEDARWVLDDVEAVVKEHSFMYEKSWIRVLSGKEEAY 203 (563)
Q Consensus 124 ~~p~~~~~~l~~Ll~~A~~~IP~~~~~~tpv~l~ATAGmR~L~~~~~~~iL~~v~~~l~~~~f~~~~~~v~VIsG~eEg~ 203 (563)
.|.+...+.++.++... + .......||.+.--.- .+...++.+.+.+-+ +.++. .+-+++.. +
T Consensus 71 ~~~~~~e~i~~~~~~~~---l-~~~~~~~~vll~~~~~---~~~~~r~~l~e~lfE---~~~~~----~v~~~~~~---~ 133 (393)
T PF00022_consen 71 VDWDALEEIWDYIFSNL---L-KVDPSDHPVLLTEPPF---NPRSQREKLAEILFE---KFGVP----SVYFIPSP---L 133 (393)
T ss_dssp SSHHHHHHHHHHHHHTT---T--SSGGGSEEEEEESTT-----HHHHHHHHHHHHH---TS--S----EEEEEEHH---H
T ss_pred ccccccccccccccccc---c-ccccccceeeeecccc---CCchhhhhhhhhhhc---ccccc----eeeeeecc---c
Confidence 35555554444444332 1 1224556777654332 334455666555554 55552 45555532 3
Q ss_pred HHHHHHHHhhhcCCCCCCCCceeeeecCCCceEEEEecCCC
Q 008515 204 YGWVALNYKMGSLGNSSITPTLGLLDLGGSSLQIVMEDDGT 244 (563)
Q Consensus 204 y~WiavNyllg~l~~~~~~~t~gvlDlGG~StQIaf~~~~~ 244 (563)
.+ -|..| ..|..|+|+|.++|+|+-..++.
T Consensus 134 ~a----~~~~g-------~~tglVVD~G~~~t~v~pV~dG~ 163 (393)
T PF00022_consen 134 LA----LYASG-------RTTGLVVDIGYSSTSVVPVVDGY 163 (393)
T ss_dssp HH----HHHTT-------BSSEEEEEESSS-EEEEEEETTE
T ss_pred cc----ccccc-------cccccccccceeeeeeeeeeecc
Confidence 22 23333 35778999999999999776653
No 23
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=81.82 E-value=5.7 Score=43.53 Aligned_cols=63 Identities=22% Similarity=0.338 Sum_probs=42.8
Q ss_pred EEEEEEeccCceEEEEEEEecCCccCCCccccccccCCCCccchhccccccccccccccchhc-cCCCHHHHHHHHHHHH
Q 008515 59 YTVVVDCGSTGTRVNVYEWKKRGVESENLPVLVGTYPDNSTKSLLRKSSCQYHCLQTEPGLDK-LVGNASGIRASLEPLI 137 (563)
Q Consensus 59 Y~vVIDaGSsgtRl~Vy~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~pGLss-~~~~p~~~~~~l~~Ll 137 (563)
+.+.+|+||+.....|-+..+++ .+.+ +. +- . .-..|+.. -..|.+++.++++..+
T Consensus 7 ~iv~LDIGTskV~~lVge~~~~g----~i~i-ig-~g--~---------------~~SrGik~G~I~di~~~~~sI~~av 63 (418)
T COG0849 7 LIVGLDIGTSKVKALVGELRPDG----RLNI-IG-VG--S---------------HPSRGIKKGVIVDLDAAAQSIKKAV 63 (418)
T ss_pred eEEEEEccCcEEEEEEEEEcCCC----eEEE-Ee-ee--c---------------ccCcccccceEEcHHHHHHHHHHHH
Confidence 67999999999999999986542 1211 11 00 0 01223333 2468899999999999
Q ss_pred HHHHHhC
Q 008515 138 LWAEWLV 144 (563)
Q Consensus 138 ~~A~~~I 144 (563)
+.|++..
T Consensus 64 ~~AE~ma 70 (418)
T COG0849 64 EAAERMA 70 (418)
T ss_pred HHHHHhc
Confidence 9999874
No 24
>CHL00094 dnaK heat shock protein 70
Probab=81.09 E-value=33 Score=39.57 Aligned_cols=94 Identities=16% Similarity=0.191 Sum_probs=58.1
Q ss_pred CHHHH-HHHHHHHHHHHHHhCCCcCCCcccEEEEecHHHhcCChhhHHHHHHHHHHHHhcCCCcccCceeEEcCchhHHH
Q 008515 125 NASGI-RASLEPLILWAEWLVPLERQEETPIFVLATAGLRRLTVEDARWVLDDVEAVVKEHSFMYEKSWIRVLSGKEEAY 203 (563)
Q Consensus 125 ~p~~~-~~~l~~Ll~~A~~~IP~~~~~~tpv~l~ATAGmR~L~~~~~~~iL~~v~~~l~~~~f~~~~~~v~VIsG~eEg~ 203 (563)
.|+.+ +..|+.|.+.|+..... ..+.+.+---|.+ .+.+++++.++++. .||. -+++|+...=|.
T Consensus 111 s~eei~a~iL~~l~~~ae~~lg~---~v~~~VItVPa~f---~~~qR~a~~~Aa~~----AGl~----v~~li~EptAAA 176 (621)
T CHL00094 111 SPEEISAQVLRKLVEDASKYLGE---TVTQAVITVPAYF---NDSQRQATKDAGKI----AGLE----VLRIINEPTAAS 176 (621)
T ss_pred cHHHHHHHHHHHHHHHHHHHhCC---CCCeEEEEECCCC---CHHHHHHHHHHHHH----cCCc----eEEEeccHHHHH
Confidence 35554 56888888888876432 1233443333332 24467777777653 5772 478888776665
Q ss_pred HHHHHHHHhhhcCCCCCCCCceeeeecCCCceEEEEec
Q 008515 204 YGWVALNYKMGSLGNSSITPTLGLLDLGGSSLQIVMED 241 (563)
Q Consensus 204 y~WiavNyllg~l~~~~~~~t~gvlDlGG~StQIaf~~ 241 (563)
++ |.+.. ....++.++|||||++.++...
T Consensus 177 la-----y~~~~----~~~~~vlV~DlGgGT~DvSv~~ 205 (621)
T CHL00094 177 LA-----YGLDK----KNNETILVFDLGGGTFDVSILE 205 (621)
T ss_pred HH-----hcccc----CCCCEEEEEEcCCCeEEEEEEE
Confidence 54 33221 1246789999999999998754
No 25
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=80.76 E-value=22 Score=39.49 Aligned_cols=159 Identities=17% Similarity=0.219 Sum_probs=80.9
Q ss_pred EEEEEEeccCceEEEEEEEecC-CccCCCccccccccCCCCccchhccccccccccccccchhccCCCHHHHHHHHHHHH
Q 008515 59 YTVVVDCGSTGTRVNVYEWKKR-GVESENLPVLVGTYPDNSTKSLLRKSSCQYHCLQTEPGLDKLVGNASGIRASLEPLI 137 (563)
Q Consensus 59 Y~vVIDaGSsgtRl~Vy~~~~~-~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~pGLss~~~~p~~~~~~l~~Ll 137 (563)
..|-||+|+|+|.+.+-+..-. ......+|.+.- .+ |.+..++.. -..|=++.-.-|.+++.+.++.=
T Consensus 4 ~SVGIDIGTSTTQlvfSrl~l~n~a~~~~vPri~I----~d-keViYrS~I-----~fTPl~~~~~ID~~al~~iv~~e- 72 (473)
T PF06277_consen 4 LSVGIDIGTSTTQLVFSRLTLENRASGFSVPRIEI----VD-KEVIYRSPI-----YFTPLLSQTEIDAEALKEIVEEE- 72 (473)
T ss_pred EEEEEeecCCceeEEEEEeEEEeccCCCccceEEE----ec-cEEEecCCc-----cccCCCCCCccCHHHHHHHHHHH-
Confidence 4588999999999998886532 112234454311 11 122222111 12465555555667766666432
Q ss_pred HHHHHhCCCcCCCcccEEEEecHHHhcCChhhHHHHHHHHHHHHhcCCCcccCceeEEcCc-hhHHHHHHHHHHHhhhcC
Q 008515 138 LWAEWLVPLERQEETPIFVLATAGLRRLTVEDARWVLDDVEAVVKEHSFMYEKSWIRVLSG-KEEAYYGWVALNYKMGSL 216 (563)
Q Consensus 138 ~~A~~~IP~~~~~~tpv~l~ATAGmR~L~~~~~~~iL~~v~~~l~~~~f~~~~~~v~VIsG-~eEg~y~WiavNyllg~l 216 (563)
+.+.-|.++....=-|.+ -=..- ..+|++++++.+-+... .|.+ ---| .-|++.+--+.--.. +
T Consensus 73 -Y~~Agi~p~~I~TGAVII-TGETA---rKeNA~~v~~~Ls~~aG--DFVV------ATAGPdLEsiiAgkGsGA~~--~ 137 (473)
T PF06277_consen 73 -YRKAGITPEDIDTGAVII-TGETA---RKENAREVLHALSGFAG--DFVV------ATAGPDLESIIAGKGSGAAA--L 137 (473)
T ss_pred -HHHcCCCHHHCccccEEE-ecchh---hhhhHHHHHHHHHHhcC--CEEE------EccCCCHHHHHhccCccHHH--H
Confidence 333334333322222222 22222 34799999999987443 3632 1112 234433322110000 0
Q ss_pred CCCCCCCceeeeecCCCceEEEEecCCC
Q 008515 217 GNSSITPTLGLLDLGGSSLQIVMEDDGT 244 (563)
Q Consensus 217 ~~~~~~~t~gvlDlGG~StQIaf~~~~~ 244 (563)
+.....++.-+|+|||-|-++.-.++.
T Consensus 138 -S~~~~~~V~NiDIGGGTtN~avf~~G~ 164 (473)
T PF06277_consen 138 -SKEHHTVVANIDIGGGTTNIAVFDNGE 164 (473)
T ss_pred -hhhhCCeEEEEEeCCCceeEEEEECCE
Confidence 012346778899999999999766543
No 26
>PRK13411 molecular chaperone DnaK; Provisional
Probab=80.23 E-value=45 Score=38.72 Aligned_cols=95 Identities=17% Similarity=0.178 Sum_probs=58.6
Q ss_pred CHHHHH-HHHHHHHHHHHHhCCCcCCCcccEEEEecHHHhcCChhhHHHHHHHHHHHHhcCCCcccCceeEEcCchhHHH
Q 008515 125 NASGIR-ASLEPLILWAEWLVPLERQEETPIFVLATAGLRRLTVEDARWVLDDVEAVVKEHSFMYEKSWIRVLSGKEEAY 203 (563)
Q Consensus 125 ~p~~~~-~~l~~Ll~~A~~~IP~~~~~~tpv~l~ATAGmR~L~~~~~~~iL~~v~~~l~~~~f~~~~~~v~VIsG~eEg~ 203 (563)
.|+.+. ..|+.|.+.|++.... ..+.+.+---|-+ ...+++++.++++. .|| +-+++|+...=|.
T Consensus 109 ~peei~a~iL~~lk~~ae~~lg~---~v~~~VITVPa~f---~~~qR~a~~~Aa~~----AGl----~v~~li~EPtAAA 174 (653)
T PRK13411 109 TPQEISAMILQKLKQDAEAYLGE---PVTQAVITVPAYF---TDAQRQATKDAGTI----AGL----EVLRIINEPTAAA 174 (653)
T ss_pred CHHHHHHHHHHHHHHHHHHHhCC---CcceEEEEECCCC---CcHHHHHHHHHHHH----cCC----CeEEEecchHHHH
Confidence 576664 4578888888876532 2333333333332 23477788777764 577 2478888776655
Q ss_pred HHHHHHHHhhhcCCCCCCCCceeeeecCCCceEEEEec
Q 008515 204 YGWVALNYKMGSLGNSSITPTLGLLDLGGSSLQIVMED 241 (563)
Q Consensus 204 y~WiavNyllg~l~~~~~~~t~gvlDlGG~StQIaf~~ 241 (563)
++ |.+.. .....++.|+|||||++.++...
T Consensus 175 l~-----y~~~~---~~~~~~vlV~DlGgGT~dvsi~~ 204 (653)
T PRK13411 175 LA-----YGLDK---QDQEQLILVFDLGGGTFDVSILQ 204 (653)
T ss_pred HH-----hcccc---cCCCCEEEEEEcCCCeEEEEEEE
Confidence 44 33321 11246789999999999998643
No 27
>PTZ00466 actin-like protein; Provisional
Probab=80.19 E-value=27 Score=37.67 Aligned_cols=70 Identities=14% Similarity=0.115 Sum_probs=39.2
Q ss_pred cccEEEEecHHHhcCChhhHHHHHHHHHHHHhcCCCcccCceeEEcCchhHHHHHHHHHHHhhhcCCCCCCCCceeeeec
Q 008515 151 ETPIFVLATAGLRRLTVEDARWVLDDVEAVVKEHSFMYEKSWIRVLSGKEEAYYGWVALNYKMGSLGNSSITPTLGLLDL 230 (563)
Q Consensus 151 ~tpv~l~ATAGmR~L~~~~~~~iL~~v~~~l~~~~f~~~~~~v~VIsG~eEg~y~WiavNyllg~l~~~~~~~t~gvlDl 230 (563)
..||.+- .+. ..+..+++.+.+.+-+ ++++. .+-+.+ +++.+-.+ .| ..|..|+|+
T Consensus 106 ~~pvllt-e~~--~~~~~~re~~~e~lFE---~~~~p----~~~~~~---~~~lsl~a----~g-------~~tglVVD~ 161 (380)
T PTZ00466 106 EHPVLLT-EAP--LNPQKNKEKIAEVFFE---TFNVP----ALFISI---QAILSLYS----CG-------KTNGTVLDC 161 (380)
T ss_pred cCeEEEe-cCc--cccHHHHHHHHHHHhc---cCCCC----eEEEec---chHHHHHh----cC-------CceEEEEeC
Confidence 4566552 222 2355567777776655 34441 234433 33333222 22 357789999
Q ss_pred CCCceEEEEecCCC
Q 008515 231 GGSSLQIVMEDDGT 244 (563)
Q Consensus 231 GG~StQIaf~~~~~ 244 (563)
|-++|+|+=..++.
T Consensus 162 G~~~t~v~PV~~G~ 175 (380)
T PTZ00466 162 GDGVCHCVSIYEGY 175 (380)
T ss_pred CCCceEEEEEECCE
Confidence 99999998665543
No 28
>PRK13410 molecular chaperone DnaK; Provisional
Probab=78.75 E-value=31 Score=40.23 Aligned_cols=94 Identities=17% Similarity=0.169 Sum_probs=59.0
Q ss_pred CHHHH-HHHHHHHHHHHHHhCCCcCCCcccEEEEecHHHhcCChhhHHHHHHHHHHHHhcCCCcccCceeEEcCchhHHH
Q 008515 125 NASGI-RASLEPLILWAEWLVPLERQEETPIFVLATAGLRRLTVEDARWVLDDVEAVVKEHSFMYEKSWIRVLSGKEEAY 203 (563)
Q Consensus 125 ~p~~~-~~~l~~Ll~~A~~~IP~~~~~~tpv~l~ATAGmR~L~~~~~~~iL~~v~~~l~~~~f~~~~~~v~VIsG~eEg~ 203 (563)
.|+.+ +..|+.|.+.|++..- ...+.+.+---|.. ...++++++++++. .||. -+++|+...=|.
T Consensus 111 speel~a~iL~~lk~~ae~~lg---~~v~~~VITVPa~f---~~~qR~a~~~Aa~~----AGl~----v~~li~EPtAAA 176 (668)
T PRK13410 111 APEELSAMILRKLADDASRYLG---EPVTGAVITVPAYF---NDSQRQATRDAGRI----AGLE----VERILNEPTAAA 176 (668)
T ss_pred cHHHHHHHHHHHHHHHHHHHhC---CCcceEEEEECCCC---CHHHHHHHHHHHHH----cCCC----eEEEecchHHHH
Confidence 46665 5678888888887642 22333333333322 23467777777754 5773 478888777666
Q ss_pred HHHHHHHHhhhcCCCCCCCCceeeeecCCCceEEEEec
Q 008515 204 YGWVALNYKMGSLGNSSITPTLGLLDLGGSSLQIVMED 241 (563)
Q Consensus 204 y~WiavNyllg~l~~~~~~~t~gvlDlGG~StQIaf~~ 241 (563)
++ |.+.. ....++.++|||||++.++...
T Consensus 177 la-----yg~~~----~~~~~vlV~DlGgGT~Dvsv~~ 205 (668)
T PRK13410 177 LA-----YGLDR----SSSQTVLVFDLGGGTFDVSLLE 205 (668)
T ss_pred HH-----hcccc----CCCCEEEEEECCCCeEEEEEEE
Confidence 54 33221 1346789999999999998754
No 29
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=78.45 E-value=48 Score=37.91 Aligned_cols=95 Identities=16% Similarity=0.172 Sum_probs=58.3
Q ss_pred CHHHH-HHHHHHHHHHHHHhCCCcCCCcccEEEEecHHHhcCChhhHHHHHHHHHHHHhcCCCcccCceeEEcCchhHHH
Q 008515 125 NASGI-RASLEPLILWAEWLVPLERQEETPIFVLATAGLRRLTVEDARWVLDDVEAVVKEHSFMYEKSWIRVLSGKEEAY 203 (563)
Q Consensus 125 ~p~~~-~~~l~~Ll~~A~~~IP~~~~~~tpv~l~ATAGmR~L~~~~~~~iL~~v~~~l~~~~f~~~~~~v~VIsG~eEg~ 203 (563)
.|+.+ +..|+.|.+.|+..... ..+.+.+---|.+ ...++++++++++. .||. -+++|+...=|.
T Consensus 106 ~peel~a~~L~~l~~~a~~~~~~---~v~~~VItVPa~f---~~~qR~a~~~Aa~~----AGl~----v~~li~EptAAA 171 (595)
T TIGR02350 106 TPQEISAMILQKLKKDAEAYLGE---KVTEAVITVPAYF---NDAQRQATKDAGKI----AGLE----VLRIINEPTAAA 171 (595)
T ss_pred cHHHHHHHHHHHHHHHHHHHhCC---CCCeEEEEECCCC---CHHHHHHHHHHHHH----cCCc----eEEEecchHHHH
Confidence 46655 56778888888876421 2233333333322 23467777777654 4672 467888776665
Q ss_pred HHHHHHHHhhhcCCCCCCCCceeeeecCCCceEEEEec
Q 008515 204 YGWVALNYKMGSLGNSSITPTLGLLDLGGSSLQIVMED 241 (563)
Q Consensus 204 y~WiavNyllg~l~~~~~~~t~gvlDlGG~StQIaf~~ 241 (563)
++| .+.. .....++.++|||||++.++...
T Consensus 172 l~y-----~~~~---~~~~~~vlV~D~Gggt~dvsv~~ 201 (595)
T TIGR02350 172 LAY-----GLDK---SKKDEKILVFDLGGGTFDVSILE 201 (595)
T ss_pred HHH-----hhcc---cCCCcEEEEEECCCCeEEEEEEE
Confidence 543 3321 12346789999999999998754
No 30
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=78.16 E-value=6.1 Score=39.41 Aligned_cols=63 Identities=19% Similarity=0.289 Sum_probs=36.8
Q ss_pred EEEEEEeccCceEEEEEEEecCCccCCCccccccccCCCCccchhccccccccccccccchhccCCCHHHHHHHHHHHHH
Q 008515 59 YTVVVDCGSTGTRVNVYEWKKRGVESENLPVLVGTYPDNSTKSLLRKSSCQYHCLQTEPGLDKLVGNASGIRASLEPLIL 138 (563)
Q Consensus 59 Y~vVIDaGSsgtRl~Vy~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~pGLss~~~~p~~~~~~l~~Ll~ 138 (563)
|.+.||+|+|++|+.+|. . ++ .+ +... ...+......+| ....||+..-+.+..+++
T Consensus 1 y~lgiDiGTts~K~~l~d-~-~g----~i---v~~~------------~~~~~~~~~~~g--~~e~d~~~~~~~~~~~~~ 57 (245)
T PF00370_consen 1 YYLGIDIGTTSVKAVLFD-E-DG----KI---VASA------------SRPYPYYTPEPG--WAEQDPDEIWEAICEALK 57 (245)
T ss_dssp EEEEEEECSSEEEEEEEE-T-TS----CE---EEEE------------EEEETEBCSSTT--EEEE-HHHHHHHHHHHHH
T ss_pred CEEEEEEcccceEEEEEe-C-CC----CE---EEEE------------EEeeeecccccc--ccccChHHHHHHHHHHHH
Confidence 679999999999999997 3 22 11 1100 000000111232 234588888888888888
Q ss_pred HHHHhC
Q 008515 139 WAEWLV 144 (563)
Q Consensus 139 ~A~~~I 144 (563)
.+.+..
T Consensus 58 ~~~~~~ 63 (245)
T PF00370_consen 58 ELLSQA 63 (245)
T ss_dssp HHHHHC
T ss_pred HHHhhc
Confidence 777654
No 31
>PTZ00004 actin-2; Provisional
Probab=77.03 E-value=38 Score=36.36 Aligned_cols=71 Identities=20% Similarity=0.137 Sum_probs=39.6
Q ss_pred CcccEEEEecHHHhcCChhhHHHHHHHHHHHHhcCCCcccCceeEEcCchhHHHHHHHHHHHhhhcCCCCCCCCceeeee
Q 008515 150 EETPIFVLATAGLRRLTVEDARWVLDDVEAVVKEHSFMYEKSWIRVLSGKEEAYYGWVALNYKMGSLGNSSITPTLGLLD 229 (563)
Q Consensus 150 ~~tpv~l~ATAGmR~L~~~~~~~iL~~v~~~l~~~~f~~~~~~v~VIsG~eEg~y~WiavNyllg~l~~~~~~~t~gvlD 229 (563)
...||.+ |... ..+...++.+.+.+-+ .+++. .+-+++..-=+.|+ .| ..|..|+|
T Consensus 100 ~~~pvll--te~~-~~~~~~r~~~~e~lFE---~~~~~----~~~~~~~~~ls~ya-------~g-------~~tglVVD 155 (378)
T PTZ00004 100 EEHPVLL--TEAP-LNPKANREKMTQIMFE---THNVP----AMYVAIQAVLSLYA-------SG-------RTTGIVLD 155 (378)
T ss_pred ccCccee--ecCC-CCcHHHHHHHHHHHHh---hcCCc----eEEeeccHHHHHHh-------cC-------CceEEEEE
Confidence 3457655 2211 1344566677776655 44442 23443332222332 22 35778999
Q ss_pred cCCCceEEEEecCCC
Q 008515 230 LGGSSLQIVMEDDGT 244 (563)
Q Consensus 230 lGG~StQIaf~~~~~ 244 (563)
+|.+.|+|+=..++.
T Consensus 156 iG~~~t~v~pV~dG~ 170 (378)
T PTZ00004 156 SGDGVSHTVPIYEGY 170 (378)
T ss_pred CCCCcEEEEEEECCE
Confidence 999999999766553
No 32
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=76.42 E-value=58 Score=37.58 Aligned_cols=94 Identities=17% Similarity=0.167 Sum_probs=58.7
Q ss_pred CHHHH-HHHHHHHHHHHHHhCCCcCCCcccEEEEecHHHhcCChhhHHHHHHHHHHHHhcCCCcccCceeEEcCchhHHH
Q 008515 125 NASGI-RASLEPLILWAEWLVPLERQEETPIFVLATAGLRRLTVEDARWVLDDVEAVVKEHSFMYEKSWIRVLSGKEEAY 203 (563)
Q Consensus 125 ~p~~~-~~~l~~Ll~~A~~~IP~~~~~~tpv~l~ATAGmR~L~~~~~~~iL~~v~~~l~~~~f~~~~~~v~VIsG~eEg~ 203 (563)
.|+.+ +..|+.|.+.|++.... ..+.+.+---|.+ .+.+++++.++++. .|+. -+++|+...=|.
T Consensus 125 ~p~ei~a~iL~~lk~~ae~~lg~---~v~~~VITVPa~f---~~~qR~a~~~Aa~~----AGl~----v~~li~EPtAAA 190 (616)
T PRK05183 125 SPVEVSAEILKALRQRAEETLGG---ELDGAVITVPAYF---DDAQRQATKDAARL----AGLN----VLRLLNEPTAAA 190 (616)
T ss_pred cHHHHHHHHHHHHHHHHHHHhCC---CcceEEEEECCCC---CHHHHHHHHHHHHH----cCCC----eEEEecchHHHH
Confidence 46555 56788888888887543 2223333222222 23466777666654 5772 468898887776
Q ss_pred HHHHHHHHhhhcCCCCCCCCceeeeecCCCceEEEEec
Q 008515 204 YGWVALNYKMGSLGNSSITPTLGLLDLGGSSLQIVMED 241 (563)
Q Consensus 204 y~WiavNyllg~l~~~~~~~t~gvlDlGG~StQIaf~~ 241 (563)
++| .+.. ....++.++|+|||++.|+...
T Consensus 191 lay-----~~~~----~~~~~vlV~DlGGGT~DvSv~~ 219 (616)
T PRK05183 191 IAY-----GLDS----GQEGVIAVYDLGGGTFDISILR 219 (616)
T ss_pred HHh-----hccc----CCCCEEEEEECCCCeEEEEEEE
Confidence 654 2221 1246789999999999998653
No 33
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=75.19 E-value=64 Score=37.22 Aligned_cols=94 Identities=15% Similarity=0.145 Sum_probs=59.4
Q ss_pred CHHHH-HHHHHHHHHHHHHhCCCcCCCcccEEEEecHHHhcCChhhHHHHHHHHHHHHhcCCCcccCceeEEcCchhHHH
Q 008515 125 NASGI-RASLEPLILWAEWLVPLERQEETPIFVLATAGLRRLTVEDARWVLDDVEAVVKEHSFMYEKSWIRVLSGKEEAY 203 (563)
Q Consensus 125 ~p~~~-~~~l~~Ll~~A~~~IP~~~~~~tpv~l~ATAGmR~L~~~~~~~iL~~v~~~l~~~~f~~~~~~v~VIsG~eEg~ 203 (563)
.|+.+ +..|+.|.+.|++.... ..+.+.+---|.+ ...++++++++++. .||. -+++|+...=|.
T Consensus 109 ~peel~a~iL~~lk~~ae~~~g~---~v~~~VItVPa~f---~~~qR~a~~~Aa~~----AGl~----v~~li~EptAAA 174 (627)
T PRK00290 109 TPQEISAMILQKLKKDAEDYLGE---KVTEAVITVPAYF---NDAQRQATKDAGKI----AGLE----VLRIINEPTAAA 174 (627)
T ss_pred cHHHHHHHHHHHHHHHHHHHhCC---CCceEEEEECCCC---CHHHHHHHHHHHHH----cCCc----eEEEecchHHHH
Confidence 46665 56788888888876532 2233333333322 23477788777764 4662 468888777665
Q ss_pred HHHHHHHHhhhcCCCCCCCCceeeeecCCCceEEEEec
Q 008515 204 YGWVALNYKMGSLGNSSITPTLGLLDLGGSSLQIVMED 241 (563)
Q Consensus 204 y~WiavNyllg~l~~~~~~~t~gvlDlGG~StQIaf~~ 241 (563)
++| .+.. . ...++.++|+|||++.++...
T Consensus 175 l~y-----~~~~---~-~~~~vlV~D~GggT~dvsv~~ 203 (627)
T PRK00290 175 LAY-----GLDK---K-GDEKILVYDLGGGTFDVSILE 203 (627)
T ss_pred HHh-----hhcc---C-CCCEEEEEECCCCeEEEEEEE
Confidence 543 3322 1 246789999999999998754
No 34
>PTZ00280 Actin-related protein 3; Provisional
Probab=75.16 E-value=54 Score=35.64 Aligned_cols=103 Identities=12% Similarity=-0.012 Sum_probs=51.1
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCcCCCcccEEEEecHHHhcCChhhHHHHHHHHHHHHhcCCCcccCceeEEcCchhHHH
Q 008515 124 GNASGIRASLEPLILWAEWLVPLERQEETPIFVLATAGLRRLTVEDARWVLDDVEAVVKEHSFMYEKSWIRVLSGKEEAY 203 (563)
Q Consensus 124 ~~p~~~~~~l~~Ll~~A~~~IP~~~~~~tpv~l~ATAGmR~L~~~~~~~iL~~v~~~l~~~~f~~~~~~v~VIsG~eEg~ 203 (563)
.|-+.+...++-++....+ +.. ...|+.+ .... ..|..+++.+.+.+-+ .+++. .+-+....-=+.
T Consensus 79 ~dwd~~e~l~~~~~~~~L~-~~p---~~~~vll-te~~--~~~~~~Re~l~e~lFE---~~~~p----~i~~~~~~~lsl 144 (414)
T PTZ00280 79 EDWDLMEKFWEQCIFKYLR-CEP---EEHYFIL-TEPP--MNPPENREYTAEIMFE---TFNVK----GLYIAVQAVLAL 144 (414)
T ss_pred CCHHHHHHHHHHHHHHhhc-cCC---CCCceEE-eeCC--CCcHHHHHHHHHHHhh---ccCCC----eEEEecCHHHhH
Confidence 3555665555544432222 211 2335544 2222 2355577777777765 33441 244444444444
Q ss_pred HHHHHHHHhhhcCCCCCCCCceeeeecCCCceEEEEecCCC
Q 008515 204 YGWVALNYKMGSLGNSSITPTLGLLDLGGSSLQIVMEDDGT 244 (563)
Q Consensus 204 y~WiavNyllg~l~~~~~~~t~gvlDlGG~StQIaf~~~~~ 244 (563)
|+- |..+.-.......|..|+|+|.+.|+|+-..++.
T Consensus 145 ya~----~~~~~~~~~~g~~tglVVDiG~~~T~i~PV~~G~ 181 (414)
T PTZ00280 145 RAS----WTSKKAKELGGTLTGTVIDSGDGVTHVIPVVDGY 181 (414)
T ss_pred hhh----cccccccccCCceeEEEEECCCCceEEEEEECCE
Confidence 431 1111000000235678999999999999765543
No 35
>PTZ00452 actin; Provisional
Probab=74.24 E-value=52 Score=35.41 Aligned_cols=83 Identities=11% Similarity=0.094 Sum_probs=46.0
Q ss_pred cccEEEEecHHHhcCChhhHHHHHHHHHHHHhcCCCcccCceeEEcCchhHHHHHHHHHHHhhhcCCCCCCCCceeeeec
Q 008515 151 ETPIFVLATAGLRRLTVEDARWVLDDVEAVVKEHSFMYEKSWIRVLSGKEEAYYGWVALNYKMGSLGNSSITPTLGLLDL 230 (563)
Q Consensus 151 ~tpv~l~ATAGmR~L~~~~~~~iL~~v~~~l~~~~f~~~~~~v~VIsG~eEg~y~WiavNyllg~l~~~~~~~t~gvlDl 230 (563)
..||.+ |... ..+..+++.+.+.+-+ .+++. .+-+....-=+.|+ .| ..|..|+|+
T Consensus 100 ~~pvli--tE~~-~~~~~~Re~l~eilFE---~~~vp----~~~~~~~~~lslya-------~g-------~~tglVVDi 155 (375)
T PTZ00452 100 DQPVFM--TDAP-MNSKFNRERMTQIMFE---TFNTP----CLYISNEAVLSLYT-------SG-------KTIGLVVDS 155 (375)
T ss_pred cCceee--ecCC-CCCHHHHHHHHHHHhh---ccCCc----eEEEechHHHHHHH-------CC-------CceeeeecC
Confidence 346665 3322 2355677777776655 33331 12333322223332 22 346789999
Q ss_pred CCCceEEEEecCCCCCCCceEEEEecc
Q 008515 231 GGSSLQIVMEDDGTGNDEHLIRSEIGS 257 (563)
Q Consensus 231 GG~StQIaf~~~~~~~~~~~~~~~l~~ 257 (563)
|-+.|+|+=..++-.......++.+||
T Consensus 156 G~~~t~v~PV~dG~~l~~~~~r~~~gG 182 (375)
T PTZ00452 156 GEGVTHCVPVFEGHQIPQAITKINLAG 182 (375)
T ss_pred CCCcceEEEEECCEEeccceEEeeccc
Confidence 999999997666644334444555555
No 36
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=73.99 E-value=8.5 Score=38.81 Aligned_cols=18 Identities=33% Similarity=0.504 Sum_probs=15.7
Q ss_pred EEEEEEeccCceEEEEEE
Q 008515 59 YTVVVDCGSTGTRVNVYE 76 (563)
Q Consensus 59 Y~vVIDaGSsgtRl~Vy~ 76 (563)
|.+-||+|||+++..+|.
T Consensus 1 ~~lGIDiGtts~K~vl~d 18 (248)
T TIGR00241 1 ISLGIDSGSTTTKMVLME 18 (248)
T ss_pred CEEEEEcChhheEEEEEc
Confidence 346799999999999995
No 37
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=73.97 E-value=41 Score=35.26 Aligned_cols=95 Identities=13% Similarity=0.075 Sum_probs=51.3
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCcCCCcccEEEEecHHHhcCChhhHHHHHHHHHHHHhcCCCcccCceeEEcCchhHHH
Q 008515 124 GNASGIRASLEPLILWAEWLVPLERQEETPIFVLATAGLRRLTVEDARWVLDDVEAVVKEHSFMYEKSWIRVLSGKEEAY 203 (563)
Q Consensus 124 ~~p~~~~~~l~~Ll~~A~~~IP~~~~~~tpv~l~ATAGmR~L~~~~~~~iL~~v~~~l~~~~f~~~~~~v~VIsG~eEg~ 203 (563)
.|.+.+.+.++.+++...+..+ . ..|..+.+... ..+..+++++.+ .++..++. .+.+++..--+.
T Consensus 74 ~d~~~~~~~~~~~l~~~~~~~~---~-~~~~~vitvP~--~~~~~~r~~~~~----~~~~ag~~----~~~li~ep~aaa 139 (333)
T TIGR00904 74 ADFEVTEKMIKYFIKQVHSRKS---F-FKPRIVICVPS--GITPVERRAVKE----SALSAGAR----EVYLIEEPMAAA 139 (333)
T ss_pred EcHHHHHHHHHHHHHHHhcccc---c-CCCcEEEEeCC--CCCHHHHHHHHH----HHHHcCCC----eEEEecCHHHHH
Confidence 3566777777777766554321 1 12322222221 123345555333 33355662 477777665555
Q ss_pred HHHHHHHHhhhcCCCCCCCCceeeeecCCCceEEEEec
Q 008515 204 YGWVALNYKMGSLGNSSITPTLGLLDLGGSSLQIVMED 241 (563)
Q Consensus 204 y~WiavNyllg~l~~~~~~~t~gvlDlGG~StQIaf~~ 241 (563)
|++ |. .. ....++.++|+|||.|+++...
T Consensus 140 ~~~-------g~-~~-~~~~~~lVvDiG~gttdvs~v~ 168 (333)
T TIGR00904 140 IGA-------GL-PV-EEPTGSMVVDIGGGTTEVAVIS 168 (333)
T ss_pred Hhc-------CC-cc-cCCceEEEEEcCCCeEEEEEEE
Confidence 532 21 11 1234578999999999999864
No 38
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=73.28 E-value=50 Score=37.40 Aligned_cols=125 Identities=19% Similarity=0.175 Sum_probs=68.7
Q ss_pred CHHHH-HHHHHHHHHHHHHhCCCcCCCcccEEEEecHHHhcCChhhHHHHHHHHHHHHhcCCCcccCceeEEcCchhHHH
Q 008515 125 NASGI-RASLEPLILWAEWLVPLERQEETPIFVLATAGLRRLTVEDARWVLDDVEAVVKEHSFMYEKSWIRVLSGKEEAY 203 (563)
Q Consensus 125 ~p~~~-~~~l~~Ll~~A~~~IP~~~~~~tpv~l~ATAGmR~L~~~~~~~iL~~v~~~l~~~~f~~~~~~v~VIsG~eEg~ 203 (563)
.|+.+ +..|+.|.+.|++..... .+.+.+---|. ....+++++.++++. .||. .+++|+.. +|.
T Consensus 111 ~~~~~~~~~l~~l~~~a~~~~~~~---~~~~vitVPa~---~~~~qr~~~~~Aa~~----agl~----~~~li~Ep-~Aa 175 (602)
T PF00012_consen 111 SPEELSAMILKYLKEMAEKYLGEK---VTDVVITVPAY---FTDEQRQALRDAAEL----AGLN----VLRLINEP-TAA 175 (602)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHTSB---EEEEEEEE-TT-----HHHHHHHHHHHHH----TT-E----EEEEEEHH-HHH
T ss_pred eeecccccchhhhcccchhhcccc---cccceeeechh---hhhhhhhcccccccc----cccc----cceeeccc-ccc
Confidence 35544 567888888888764221 23333322222 233467777777764 5772 46788644 332
Q ss_pred HHHHHHHHhhhcCCCCCCCCceeeeecCCCceEEEEecCCCCCCCceEEEEecceeEEEEE-EeeccccHHHHHHHHHHH
Q 008515 204 YGWVALNYKMGSLGNSSITPTLGLLDLGGSSLQIVMEDDGTGNDEHLIRSEIGSIEHRVLA-YSLQEFGLNAAFDRAVAM 282 (563)
Q Consensus 204 y~WiavNyllg~l~~~~~~~t~gvlDlGG~StQIaf~~~~~~~~~~~~~~~l~~~~~~ly~-~S~LgyGln~Ar~r~~~~ 282 (563)
++.|.+.+-. ...++.++|+|||++.++...-. +..+.+.. .....+|.+..=+++...
T Consensus 176 ----a~~y~~~~~~---~~~~vlv~D~Gggt~dvs~~~~~-------------~~~~~v~~~~~~~~lGG~~~D~~l~~~ 235 (602)
T PF00012_consen 176 ----ALAYGLERSD---KGKTVLVVDFGGGTFDVSVVEFS-------------NGQFEVLATAGDNNLGGRDFDEALAEY 235 (602)
T ss_dssp ----HHHTTTTSSS---SEEEEEEEEEESSEEEEEEEEEE-------------TTEEEEEEEEEETTCSHHHHHHHHHHH
T ss_pred ----cccccccccc---cccceeccccccceEeeeehhcc-------------cccccccccccccccccceecceeecc
Confidence 3445544322 24688999999999999976411 11223333 334567776554444444
Q ss_pred Hh
Q 008515 283 LS 284 (563)
Q Consensus 283 L~ 284 (563)
+.
T Consensus 236 ~~ 237 (602)
T PF00012_consen 236 LL 237 (602)
T ss_dssp HH
T ss_pred cc
Confidence 44
No 39
>PLN03184 chloroplast Hsp70; Provisional
Probab=71.42 E-value=67 Score=37.50 Aligned_cols=94 Identities=17% Similarity=0.182 Sum_probs=57.5
Q ss_pred CHHHH-HHHHHHHHHHHHHhCCCcCCCcccEEEEecHHHhcCChhhHHHHHHHHHHHHhcCCCcccCceeEEcCchhHHH
Q 008515 125 NASGI-RASLEPLILWAEWLVPLERQEETPIFVLATAGLRRLTVEDARWVLDDVEAVVKEHSFMYEKSWIRVLSGKEEAY 203 (563)
Q Consensus 125 ~p~~~-~~~l~~Ll~~A~~~IP~~~~~~tpv~l~ATAGmR~L~~~~~~~iL~~v~~~l~~~~f~~~~~~v~VIsG~eEg~ 203 (563)
.|+.+ +..|+.|.+.|++.... ..+.+.+---|.+ .+.+++++.++.+. .||. -+++|+...=+.
T Consensus 148 speei~a~iL~~lk~~ae~~lg~---~v~~~VITVPa~f---~~~qR~a~~~Aa~~----AGl~----v~~li~EPtAAA 213 (673)
T PLN03184 148 AAEEISAQVLRKLVDDASKFLND---KVTKAVITVPAYF---NDSQRTATKDAGRI----AGLE----VLRIINEPTAAS 213 (673)
T ss_pred cHHHHHHHHHHHHHHHHHHHhCC---CCCeEEEEECCCC---CHHHHHHHHHHHHH----CCCC----eEEEeCcHHHHH
Confidence 35554 56888888888876532 2333333333322 23467777776654 5772 478888776554
Q ss_pred HHHHHHHHhhhcCCCCCCCCceeeeecCCCceEEEEec
Q 008515 204 YGWVALNYKMGSLGNSSITPTLGLLDLGGSSLQIVMED 241 (563)
Q Consensus 204 y~WiavNyllg~l~~~~~~~t~gvlDlGG~StQIaf~~ 241 (563)
++ |.+.. ....++.++|||||++.|+...
T Consensus 214 la-----yg~~~----~~~~~vlV~DlGgGT~DvSi~~ 242 (673)
T PLN03184 214 LA-----YGFEK----KSNETILVFDLGGGTFDVSVLE 242 (673)
T ss_pred HH-----hhccc----CCCCEEEEEECCCCeEEEEEEE
Confidence 43 33221 1246789999999999998754
No 40
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=70.73 E-value=99 Score=35.93 Aligned_cols=96 Identities=14% Similarity=0.156 Sum_probs=57.9
Q ss_pred CHHHH-HHHHHHHHHHHHHhCCCcCCCcccEEEEecHHHhcCChhhHHHHHHHHHHHHhcCCCcccCceeEEcCchhHHH
Q 008515 125 NASGI-RASLEPLILWAEWLVPLERQEETPIFVLATAGLRRLTVEDARWVLDDVEAVVKEHSFMYEKSWIRVLSGKEEAY 203 (563)
Q Consensus 125 ~p~~~-~~~l~~Ll~~A~~~IP~~~~~~tpv~l~ATAGmR~L~~~~~~~iL~~v~~~l~~~~f~~~~~~v~VIsG~eEg~ 203 (563)
.|+.+ +..|+.|.+.|++..- ...+.+.+---|-. ...+++++.++++. .||. -+++|+...=|.
T Consensus 116 ~peel~a~iL~~lk~~ae~~~g---~~v~~~VItVPa~f---~~~qR~a~~~Aa~~----AGl~----v~~li~EptAAA 181 (653)
T PTZ00009 116 HPEEISSMVLQKMKEIAEAYLG---KQVKDAVVTVPAYF---NDSQRQATKDAGTI----AGLN----VLRIINEPTAAA 181 (653)
T ss_pred CHHHHHHHHHHHHHHHHHHHhC---CCcceeEEEeCCCC---CHHHHHHHHHHHHH----cCCc----eeEEecchHHHH
Confidence 46665 4577888888887642 12233333222222 23467777776664 5772 478888776655
Q ss_pred HHHHHHHHhhhcCCCCCCCCceeeeecCCCceEEEEec
Q 008515 204 YGWVALNYKMGSLGNSSITPTLGLLDLGGSSLQIVMED 241 (563)
Q Consensus 204 y~WiavNyllg~l~~~~~~~t~gvlDlGG~StQIaf~~ 241 (563)
+++ .+..- .....++.++|+|||++.++...
T Consensus 182 l~y-----~~~~~--~~~~~~vlv~D~GggT~dvsv~~ 212 (653)
T PTZ00009 182 IAY-----GLDKK--GDGEKNVLIFDLGGGTFDVSLLT 212 (653)
T ss_pred HHH-----hhhcc--CCCCCEEEEEECCCCeEEEEEEE
Confidence 543 33211 11246789999999999998754
No 41
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=70.45 E-value=62 Score=37.72 Aligned_cols=94 Identities=18% Similarity=0.191 Sum_probs=58.8
Q ss_pred CHHHH-HHHHHHHHHHHHHhCCCcCCCcccEEEEecHHHhcCChhhHHHHHHHHHHHHhcCCCcccCceeEEcCchhHHH
Q 008515 125 NASGI-RASLEPLILWAEWLVPLERQEETPIFVLATAGLRRLTVEDARWVLDDVEAVVKEHSFMYEKSWIRVLSGKEEAY 203 (563)
Q Consensus 125 ~p~~~-~~~l~~Ll~~A~~~IP~~~~~~tpv~l~ATAGmR~L~~~~~~~iL~~v~~~l~~~~f~~~~~~v~VIsG~eEg~ 203 (563)
.|+.+ +..|+.|.+.|++.... ..+.+.+---|- ....++++++++++. .||. -+++|+...=|.
T Consensus 150 speel~a~iL~~lk~~ae~~lg~---~v~~~VITVPa~---f~~~qR~a~~~Aa~~----AGl~----v~~li~EptAAA 215 (663)
T PTZ00400 150 SPSQIGAFVLEKMKETAESYLGR---KVKQAVITVPAY---FNDSQRQATKDAGKI----AGLD----VLRIINEPTAAA 215 (663)
T ss_pred CHHHHHHHHHHHHHHHHHHHhCC---CCceEEEEECCC---CCHHHHHHHHHHHHH----cCCc----eEEEeCchHHHH
Confidence 46665 45678888888876532 222333222222 223477777777764 5772 478888887776
Q ss_pred HHHHHHHHhhhcCCCCCCCCceeeeecCCCceEEEEec
Q 008515 204 YGWVALNYKMGSLGNSSITPTLGLLDLGGSSLQIVMED 241 (563)
Q Consensus 204 y~WiavNyllg~l~~~~~~~t~gvlDlGG~StQIaf~~ 241 (563)
++| .+. . ....++.++|+|||++.++...
T Consensus 216 lay-----~~~---~-~~~~~vlV~DlGgGT~DvSv~~ 244 (663)
T PTZ00400 216 LAF-----GMD---K-NDGKTIAVYDLGGGTFDISILE 244 (663)
T ss_pred HHh-----ccc---c-CCCcEEEEEeCCCCeEEEEEEE
Confidence 654 221 1 1246789999999999998653
No 42
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=69.78 E-value=83 Score=36.15 Aligned_cols=94 Identities=14% Similarity=0.139 Sum_probs=58.8
Q ss_pred CHHHH-HHHHHHHHHHHHHhCCCcCCCcccEEEEecHHHhcCChhhHHHHHHHHHHHHhcCCCcccCceeEEcCchhHHH
Q 008515 125 NASGI-RASLEPLILWAEWLVPLERQEETPIFVLATAGLRRLTVEDARWVLDDVEAVVKEHSFMYEKSWIRVLSGKEEAY 203 (563)
Q Consensus 125 ~p~~~-~~~l~~Ll~~A~~~IP~~~~~~tpv~l~ATAGmR~L~~~~~~~iL~~v~~~l~~~~f~~~~~~v~VIsG~eEg~ 203 (563)
.|+.+ +..|+.|.+.|++.... ..+.+.+---|.+ ...+++++.++++. .||. -+++|+...=|.
T Consensus 105 ~p~ei~a~iL~~lk~~a~~~lg~---~v~~~VItVPa~f---~~~qR~a~~~Aa~~----AGl~----v~~li~EPtAAA 170 (599)
T TIGR01991 105 TPVEVSAEILKKLKQRAEESLGG---DLVGAVITVPAYF---DDAQRQATKDAARL----AGLN----VLRLLNEPTAAA 170 (599)
T ss_pred cHHHHHHHHHHHHHHHHHHHhCC---CcceEEEEECCCC---CHHHHHHHHHHHHH----cCCC----ceEEecCHHHHH
Confidence 46554 56778888888876532 1233333333322 23467777777654 5773 468888877766
Q ss_pred HHHHHHHHhhhcCCCCCCCCceeeeecCCCceEEEEec
Q 008515 204 YGWVALNYKMGSLGNSSITPTLGLLDLGGSSLQIVMED 241 (563)
Q Consensus 204 y~WiavNyllg~l~~~~~~~t~gvlDlGG~StQIaf~~ 241 (563)
++| .+.. ....++.++|+|||++.|+...
T Consensus 171 lay-----~~~~----~~~~~vlV~DlGgGT~DvSi~~ 199 (599)
T TIGR01991 171 VAY-----GLDK----ASEGIYAVYDLGGGTFDVSILK 199 (599)
T ss_pred HHH-----hhcc----CCCCEEEEEEcCCCeEEEEEEE
Confidence 654 2221 1246789999999999998654
No 43
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]
Probab=66.80 E-value=14 Score=41.50 Aligned_cols=85 Identities=15% Similarity=0.057 Sum_probs=54.6
Q ss_pred eEEEEEEeccCceEEEEEEEecCCccCCCccccccccCCCCccchhccccccccccccccchhccCCCHHHHHHHHHHHH
Q 008515 58 YYTVVVDCGSTGTRVNVYEWKKRGVESENLPVLVGTYPDNSTKSLLRKSSCQYHCLQTEPGLDKLVGNASGIRASLEPLI 137 (563)
Q Consensus 58 ~Y~vVIDaGSsgtRl~Vy~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~pGLss~~~~p~~~~~~l~~Ll 137 (563)
...+.||.|+|++|.-||...+.. .+ -.++. ++. ...|-=..+.-+|+++-+++..++
T Consensus 6 ~~~~gIDvGTtSaR~~v~~~~~~e----~l--~~~~~------~i~----------~~~~~~~~~eq~p~eI~~~V~~ci 63 (516)
T KOG2517|consen 6 PVVLGIDVGTTSARALVFNAKNGE----LL--SLAQK------EIT----------QEFPKEGWVEQDPKEIWQAVCRCI 63 (516)
T ss_pred ceEEEEEcCCCceEEEEEecCCCc----cc--eeeee------eee----------eecCCCCeEEeCHHHHHHHHHHHH
Confidence 567899999999999999864321 00 00100 000 011111234568999999999999
Q ss_pred HHHHHhCCCcCCCcccEEEEecHHHhc
Q 008515 138 LWAEWLVPLERQEETPIFVLATAGLRR 164 (563)
Q Consensus 138 ~~A~~~IP~~~~~~tpv~l~ATAGmR~ 164 (563)
+.|.+..+...++..-+.....++.|.
T Consensus 64 ~~~~e~l~~~~~~~~~~~~igv~~qr~ 90 (516)
T KOG2517|consen 64 EKACEKLGVLNIKVVGATCIGVVNQRE 90 (516)
T ss_pred HHHHHhhccccccccccEEEEEEecCC
Confidence 999888776666666666666666665
No 44
>KOG0679 consensus Actin-related protein - Arp4p/Act3p [Cytoskeleton]
Probab=65.77 E-value=54 Score=35.50 Aligned_cols=57 Identities=18% Similarity=0.222 Sum_probs=34.7
Q ss_pred ChhhHHHHHHHHHHHHhcCCCcccCceeEEcCchhHHHHHHHHHHHhhhcCCCCCCCCceeeeecCCCceEEEEecCC
Q 008515 166 TVEDARWVLDDVEAVVKEHSFMYEKSWIRVLSGKEEAYYGWVALNYKMGSLGNSSITPTLGLLDLGGSSLQIVMEDDG 243 (563)
Q Consensus 166 ~~~~~~~iL~~v~~~l~~~~f~~~~~~v~VIsG~eEg~y~WiavNyllg~l~~~~~~~t~gvlDlGG~StQIaf~~~~ 243 (563)
+.++++++++..-+-++---|.... + =+.+.|..| +.|..|+|+|+..+-++=..++
T Consensus 118 ~~~~Rek~~ElmFE~~nvPAf~L~k----------~----~v~~AFA~G-------rstalVvDiGa~~~svsPV~DG 174 (426)
T KOG0679|consen 118 TRANREKLTELMFEKLNVPAFYLAK----------T----AVCTAFANG-------RSTALVVDIGATHTSVSPVHDG 174 (426)
T ss_pred cHHHHHHHHHHHHhhcCCceEEEec----------h----HHHHHHhcC-------CCceEEEEecCCCceeeeeecc
Confidence 5567888888777633211121111 1 133444544 4789999999999988865554
No 45
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=62.56 E-value=1.1e+02 Score=35.82 Aligned_cols=94 Identities=21% Similarity=0.215 Sum_probs=58.1
Q ss_pred CHHHHHH-HHHHHHHHHHHhCCCcCCCcccEEEEecHHHhcCChhhHHHHHHHHHHHHhcCCCcccCceeEEcCchhHHH
Q 008515 125 NASGIRA-SLEPLILWAEWLVPLERQEETPIFVLATAGLRRLTVEDARWVLDDVEAVVKEHSFMYEKSWIRVLSGKEEAY 203 (563)
Q Consensus 125 ~p~~~~~-~l~~Ll~~A~~~IP~~~~~~tpv~l~ATAGmR~L~~~~~~~iL~~v~~~l~~~~f~~~~~~v~VIsG~eEg~ 203 (563)
.|+.+.. .|+.|.+.|++.+-. ..+.+.+-.-|.+ ...+++++.++.+. .||. -+++|+...=|.
T Consensus 136 speeisa~iL~~Lk~~Ae~~lg~---~v~~aVITVPayF---~~~qR~at~~Aa~~----AGl~----v~rlInEPtAAA 201 (657)
T PTZ00186 136 SPSQIGAFVLEKMKETAENFLGH---KVSNAVVTCPAYF---NDAQRQATKDAGTI----AGLN----VIRVVNEPTAAA 201 (657)
T ss_pred cHHHHHHHHHHHHHHHHHHHhCC---ccceEEEEECCCC---ChHHHHHHHHHHHH----cCCC----eEEEEcChHHHH
Confidence 4777654 558888888876521 2233333333322 23466777666653 5773 478888877666
Q ss_pred HHHHHHHHhhhcCCCCCCCCceeeeecCCCceEEEEec
Q 008515 204 YGWVALNYKMGSLGNSSITPTLGLLDLGGSSLQIVMED 241 (563)
Q Consensus 204 y~WiavNyllg~l~~~~~~~t~gvlDlGG~StQIaf~~ 241 (563)
++| .+.. ....++.|+|||||++.++...
T Consensus 202 lay-----g~~~----~~~~~vlV~DlGGGT~DvSil~ 230 (657)
T PTZ00186 202 LAY-----GMDK----TKDSLIAVYDLGGGTFDISVLE 230 (657)
T ss_pred HHH-----hccC----CCCCEEEEEECCCCeEEEEEEE
Confidence 554 3221 1246889999999999998754
No 46
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ]. This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C.
Probab=60.40 E-value=11 Score=39.22 Aligned_cols=56 Identities=23% Similarity=0.415 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHhcCCCcccCceeEEcCchhHHHHHHHHHHHhhhcCCCCCCCCceeeeecCCCceEEEEec
Q 008515 170 ARWVLDDVEAVVKEHSFMYEKSWIRVLSGKEEAYYGWVALNYKMGSLGNSSITPTLGLLDLGGSSLQIVMED 241 (563)
Q Consensus 170 ~~~iL~~v~~~l~~~~f~~~~~~v~VIsG~eEg~y~WiavNyllg~l~~~~~~~t~gvlDlGG~StQIaf~~ 241 (563)
=+.|-+.+.+.| +. .|+| |--|+--+ .+|.+..+.......++|||||||--++..
T Consensus 97 M~~iA~~l~~~l---gv-----~V~i--gGvEAemA------i~GALTTPGt~~PlaIlDmG~GSTDAsii~ 152 (332)
T PF08841_consen 97 MQMIADELEEEL---GV-----PVEI--GGVEAEMA------ILGALTTPGTDKPLAILDMGGGSTDASIIN 152 (332)
T ss_dssp CHHHHHHHHHHH---TS-----EEEE--ECEHHHHH------HHHHTTSTT--SSEEEEEE-SSEEEEEEE-
T ss_pred HHHHHHHHHHHH---CC-----ceEE--ccccHHHH------HhcccCCCCCCCCeEEEecCCCcccHHHhC
Confidence 345666676644 33 3555 44454444 345565543445678999999999977764
No 47
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=54.96 E-value=2e+02 Score=33.12 Aligned_cols=94 Identities=16% Similarity=0.172 Sum_probs=58.1
Q ss_pred CHHHH-HHHHHHHHHHHHHhCCCcCCCcccEEEEecHHHhcCChhhHHHHHHHHHHHHhcCCCcccCceeEEcCchhHHH
Q 008515 125 NASGI-RASLEPLILWAEWLVPLERQEETPIFVLATAGLRRLTVEDARWVLDDVEAVVKEHSFMYEKSWIRVLSGKEEAY 203 (563)
Q Consensus 125 ~p~~~-~~~l~~Ll~~A~~~IP~~~~~~tpv~l~ATAGmR~L~~~~~~~iL~~v~~~l~~~~f~~~~~~v~VIsG~eEg~ 203 (563)
.|+.+ +..|+.|.+.|+..... ..+.+.+---|.. ...+++++.++.+. .|| +-+++|+...=|.
T Consensus 117 speei~a~iL~~lk~~ae~~lg~---~v~~aVITVPa~f---~~~qR~a~~~Aa~~----AGl----~v~~li~EPtAAA 182 (595)
T PRK01433 117 RIPEIAAEIFIYLKNQAEEQLKT---NITKAVITVPAHF---NDAARGEVMLAAKI----AGF----EVLRLIAEPTAAA 182 (595)
T ss_pred cHHHHHHHHHHHHHHHHHHHhCC---CcceEEEEECCCC---CHHHHHHHHHHHHH----cCC----CEEEEecCcHHHH
Confidence 46555 56778888888876532 2233333222322 34467777777664 567 2478888877666
Q ss_pred HHHHHHHHhhhcCCCCCCCCceeeeecCCCceEEEEec
Q 008515 204 YGWVALNYKMGSLGNSSITPTLGLLDLGGSSLQIVMED 241 (563)
Q Consensus 204 y~WiavNyllg~l~~~~~~~t~gvlDlGG~StQIaf~~ 241 (563)
++| .+. . ....++.++|+|||++.++...
T Consensus 183 lay-----~~~---~-~~~~~vlV~DlGGGT~DvSi~~ 211 (595)
T PRK01433 183 YAY-----GLN---K-NQKGCYLVYDLGGGTFDVSILN 211 (595)
T ss_pred HHH-----hcc---c-CCCCEEEEEECCCCcEEEEEEE
Confidence 554 221 1 1235788999999999998653
No 48
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=49.92 E-value=56 Score=34.70 Aligned_cols=94 Identities=14% Similarity=0.116 Sum_probs=51.8
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCcCCCcccEEEEecHHHhcCChhhHHHHHHHHHHHHhcCCCcccCceeEEcCchhHHHH
Q 008515 125 NASGIRASLEPLILWAEWLVPLERQEETPIFVLATAGLRRLTVEDARWVLDDVEAVVKEHSFMYEKSWIRVLSGKEEAYY 204 (563)
Q Consensus 125 ~p~~~~~~l~~Ll~~A~~~IP~~~~~~tpv~l~ATAGmR~L~~~~~~~iL~~v~~~l~~~~f~~~~~~v~VIsG~eEg~y 204 (563)
|.+.+...|+.+++.+... ... ..|-.+++... .+.+-++.++.+.+++ .|. ..|.+|+-.-=
T Consensus 70 D~~~~~~~l~~~l~k~~~~---~~~-~~p~vvi~vP~--~~T~verrA~~~a~~~----aGa----~~V~li~ep~A--- 132 (326)
T PF06723_consen 70 DYEAAEEMLRYFLKKALGR---RSF-FRPRVVICVPS--GITEVERRALIDAARQ----AGA----RKVYLIEEPIA--- 132 (326)
T ss_dssp SHHHHHHHHHHHHHHHHTS---S-S-S--EEEEEE-S--S--HHHHHHHHHHHHH----TT-----SEEEEEEHHHH---
T ss_pred CHHHHHHHHHHHHHHhccC---CCC-CCCeEEEEeCC--CCCHHHHHHHHHHHHH----cCC----CEEEEecchHH---
Confidence 6788888999999888752 222 34544444332 2333478888888876 333 25788864422
Q ss_pred HHHHHHHhhhcCCCCCCCCceeeeecCCCceEEEEec
Q 008515 205 GWVALNYKMGSLGNSSITPTLGLLDLGGSSLQIVMED 241 (563)
Q Consensus 205 ~WiavNyllg~l~~~~~~~t~gvlDlGG~StQIaf~~ 241 (563)
+-+++ | +.-. .....-++|+|||.|+|+...
T Consensus 133 aAiGa----G-l~i~-~~~g~miVDIG~GtTdiavis 163 (326)
T PF06723_consen 133 AAIGA----G-LDIF-EPRGSMIVDIGGGTTDIAVIS 163 (326)
T ss_dssp HHHHT----T---TT-SSS-EEEEEE-SS-EEEEEEE
T ss_pred HHhcC----C-CCCC-CCCceEEEEECCCeEEEEEEE
Confidence 22222 2 1111 123457899999999999765
No 49
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=45.66 E-value=67 Score=33.71 Aligned_cols=66 Identities=20% Similarity=0.196 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHhcCCCcccCceeEEcCchhHHHHHHHHHHHhhh-cCCCCCCCCc-eeeeecCCCceEEEEecCC
Q 008515 170 ARWVLDDVEAVVKEHSFMYEKSWIRVLSGKEEAYYGWVALNYKMG-SLGNSSITPT-LGLLDLGGSSLQIVMEDDG 243 (563)
Q Consensus 170 ~~~iL~~v~~~l~~~~f~~~~~~v~VIsG~eEg~y~WiavNyllg-~l~~~~~~~t-~gvlDlGG~StQIaf~~~~ 243 (563)
+..+++...+.+++.|+ .+..|+=+-=|.+.-+. +++ .+..+....+ +.++|+|+++|.+++..++
T Consensus 141 ~~~~v~~~~~~~~~aGl-----~~~~id~~~~Al~~~~~---~~~~~~~~~~~~~~~~~lvdiG~~~t~l~i~~~g 208 (348)
T TIGR01175 141 RKEVVDSRLHALKLAGL-----EPKVVDVESFALLRAWR---LLGEQLASRTYRLTDAALVDIGATSSTLNLLHPG 208 (348)
T ss_pred cHHHHHHHHHHHHHcCC-----ceEEEecHHHHHHHHHH---HHHhhCccccccCceEEEEEECCCcEEEEEEECC
Confidence 35678888888888898 56777654444433332 122 2322222343 7899999999999987543
No 50
>PRK11678 putative chaperone; Provisional
Probab=44.89 E-value=1.5e+02 Score=32.78 Aligned_cols=131 Identities=16% Similarity=0.053 Sum_probs=70.5
Q ss_pred HHHH-HHHHHHHHHHHHHhCCCcCCCcccEEEEecHHHhcC--ChhhHHHHHHHHHHHHhcCCCcccCceeEEcCchhHH
Q 008515 126 ASGI-RASLEPLILWAEWLVPLERQEETPIFVLATAGLRRL--TVEDARWVLDDVEAVVKEHSFMYEKSWIRVLSGKEEA 202 (563)
Q Consensus 126 p~~~-~~~l~~Ll~~A~~~IP~~~~~~tpv~l~ATAGmR~L--~~~~~~~iL~~v~~~l~~~~f~~~~~~v~VIsG~eEg 202 (563)
++.+ +..|+.|.+.|+..+. ...+.+.+---+...-. ++.++++ .+.+++.-+..|| +.+++|+...=|
T Consensus 126 ~e~l~a~iL~~lk~~ae~~~g---~~v~~~VItvPa~F~~~~~~~~qr~a-~~~l~~Aa~~AG~----~~v~li~EPtAA 197 (450)
T PRK11678 126 FEDLVCAMMLHIKQQAEAQLQ---AAITQAVIGRPVNFQGLGGEEANRQA-EGILERAAKRAGF----KDVEFQFEPVAA 197 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHhC---CCCCcEEEEECCccccCCcchhHHHH-HHHHHHHHHHcCC----CEEEEEcCHHHH
Confidence 4433 4566777777777642 12233444444433321 1223322 1122222224678 368999977777
Q ss_pred HHHHHHHHHhhhcCCCCCCCCceeeeecCCCceEEEEecCCCCCCCceEEEEecceeEEEEEEeeccccHHHHHHHH
Q 008515 203 YYGWVALNYKMGSLGNSSITPTLGLLDLGGSSLQIVMEDDGTGNDEHLIRSEIGSIEHRVLAYSLQEFGLNAAFDRA 279 (563)
Q Consensus 203 ~y~WiavNyllg~l~~~~~~~t~gvlDlGG~StQIaf~~~~~~~~~~~~~~~l~~~~~~ly~~S~LgyGln~Ar~r~ 279 (563)
.++|= . .+ ...+++.|+|+|||.+.++...-.... . .-.....+|.+++-..+|-+..=+++
T Consensus 198 Al~y~-----~-~~---~~~~~vlV~D~GGGT~D~Svv~~~~~~-----~-~~~~r~~~vla~~G~~lGG~DfD~~L 259 (450)
T PRK11678 198 GLDFE-----A-TL---TEEKRVLVVDIGGGTTDCSMLLMGPSW-----R-GRADRSASLLGHSGQRIGGNDLDIAL 259 (450)
T ss_pred HHHhc-----c-cc---CCCCeEEEEEeCCCeEEEEEEEecCcc-----c-ccCCcceeEEecCCCCCChHHHHHHH
Confidence 77551 1 11 134678999999999999876421110 0 01123356778877778887654343
No 51
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=42.77 E-value=26 Score=31.24 Aligned_cols=61 Identities=25% Similarity=0.247 Sum_probs=31.2
Q ss_pred EEEEEeccCceEEEEEEEecCCccCCCccccccccCCCCccchhccccccccccccccchhcc-CCCHHHHHHHHHHHHH
Q 008515 60 TVVVDCGSTGTRVNVYEWKKRGVESENLPVLVGTYPDNSTKSLLRKSSCQYHCLQTEPGLDKL-VGNASGIRASLEPLIL 138 (563)
Q Consensus 60 ~vVIDaGSsgtRl~Vy~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~pGLss~-~~~p~~~~~~l~~Ll~ 138 (563)
.++||.||+.|++.||+-...+ .+ +-.+.. ..-..|+..- ..|.+++.++|+.-++
T Consensus 1 i~~iDiGs~~~~~~i~~~~~~~----~~----~vl~~g---------------~~~s~gi~~g~Itd~~~i~~~i~~a~~ 57 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAEDGSDG----YI----RVLGVG---------------EVPSKGIKGGHITDIEDISKAIKIAIE 57 (120)
T ss_dssp EEEEEE-SSSEEEEEEETTEEE----EE----EEES-------------------------HHHHH--HHHHHHHT--HH
T ss_pred CEEEEcCCCcEEEEEEEeCCCC----cE----EEEEEe---------------cccccccCCCEEEEHHHHHHHHHHHHH
Confidence 3799999999999999873321 11 100000 0012344442 4567888888888888
Q ss_pred HHHHh
Q 008515 139 WAEWL 143 (563)
Q Consensus 139 ~A~~~ 143 (563)
.|++.
T Consensus 58 ~AE~~ 62 (120)
T PF14450_consen 58 EAERL 62 (120)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88876
No 52
>PLN02295 glycerol kinase
Probab=42.61 E-value=53 Score=36.82 Aligned_cols=19 Identities=32% Similarity=0.611 Sum_probs=16.5
Q ss_pred EEEEEEeccCceEEEEEEE
Q 008515 59 YTVVVDCGSTGTRVNVYEW 77 (563)
Q Consensus 59 Y~vVIDaGSsgtRl~Vy~~ 77 (563)
|.+.||+|+|++|..||.-
T Consensus 1 ~vlgID~GTts~Ka~l~d~ 19 (512)
T PLN02295 1 FVGAIDQGTTSTRFIIYDR 19 (512)
T ss_pred CEEEEecCCCceEEEEECC
Confidence 4578999999999999963
No 53
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=41.41 E-value=2.7e+02 Score=31.95 Aligned_cols=127 Identities=13% Similarity=0.104 Sum_probs=74.5
Q ss_pred CHHHH-HHHHHHHHHHHHHhCCCcCCCcccEEEEecHHHhcCChhhHHHHHHHHHHHHhcCCCcccCceeEEcCchhHHH
Q 008515 125 NASGI-RASLEPLILWAEWLVPLERQEETPIFVLATAGLRRLTVEDARWVLDDVEAVVKEHSFMYEKSWIRVLSGKEEAY 203 (563)
Q Consensus 125 ~p~~~-~~~l~~Ll~~A~~~IP~~~~~~tpv~l~ATAGmR~L~~~~~~~iL~~v~~~l~~~~f~~~~~~v~VIsG~eEg~ 203 (563)
.|+.+ +..|+.|.+.|+..++..-. .+.+---|- ....++++..++.+ ..|| ..+++|+--.=|.
T Consensus 96 ~~eeisa~~L~~lk~~ae~~lg~~v~---~~VItVPay---F~d~qR~at~~A~~----iaGl----~vlrlinEPtAAA 161 (579)
T COG0443 96 TPEEISAMILTKLKEDAEAYLGEKVT---DAVITVPAY---FNDAQRQATKDAAR----IAGL----NVLRLINEPTAAA 161 (579)
T ss_pred CHHHHHHHHHHHHHHHHHHhhCCCcc---eEEEEeCCC---CCHHHHHHHHHHHH----HcCC----CeEEEecchHHHH
Confidence 35554 67889999999988764322 222211111 12224444444444 3677 3578998888777
Q ss_pred HHHHHHHHhhhcCCCCCCCCceeeeecCCCceEEEEecCCCCCCCceEEEEecceeEEEEEEeeccccHHHHHHHHHHHH
Q 008515 204 YGWVALNYKMGSLGNSSITPTLGLLDLGGSSLQIVMEDDGTGNDEHLIRSEIGSIEHRVLAYSLQEFGLNAAFDRAVAML 283 (563)
Q Consensus 204 y~WiavNyllg~l~~~~~~~t~gvlDlGG~StQIaf~~~~~~~~~~~~~~~l~~~~~~ly~~S~LgyGln~Ar~r~~~~L 283 (563)
|+|- +.. ....++.|+|+|||.+-++...-. .+.--.+=++....+|-+..=++++..+
T Consensus 162 layg-----~~~----~~~~~vlV~DlGGGTfDvSll~~~------------~g~~ev~at~gd~~LGGddfD~~l~~~~ 220 (579)
T COG0443 162 LAYG-----LDK----GKEKTVLVYDLGGGTFDVSLLEIG------------DGVFEVLATGGDNHLGGDDFDNALIDYL 220 (579)
T ss_pred HHhH-----hcc----CCCcEEEEEEcCCCCEEEEEEEEc------------CCEEEEeecCCCcccCchhHHHHHHHHH
Confidence 7652 211 134689999999999988865421 1111123344556677777666666666
Q ss_pred hhc
Q 008515 284 SQV 286 (563)
Q Consensus 284 ~~~ 286 (563)
++.
T Consensus 221 ~~~ 223 (579)
T COG0443 221 VME 223 (579)
T ss_pred HHH
Confidence 543
No 54
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=39.90 E-value=1.5e+02 Score=31.46 Aligned_cols=86 Identities=21% Similarity=0.235 Sum_probs=50.7
Q ss_pred ccEEEEecHHHhcCChhhHH---HHHHHHHHHHhcCCCcccCceeEEcCchhHHHH-------HHHHHHHhhhcCCCCCC
Q 008515 152 TPIFVLATAGLRRLTVEDAR---WVLDDVEAVVKEHSFMYEKSWIRVLSGKEEAYY-------GWVALNYKMGSLGNSSI 221 (563)
Q Consensus 152 tpv~l~ATAGmR~L~~~~~~---~iL~~v~~~l~~~~f~~~~~~v~VIsG~eEg~y-------~WiavNyllg~l~~~~~ 221 (563)
..+.+-=|+=|=..=+.+++ .|++.+.+.+.. ++.+-.++-.+++-++=..+ +|++.-..+++.
T Consensus 53 ~~~avtMTgELaD~f~~r~~GV~~i~~~~~~~~~~-~~~i~~s~GG~~s~~~a~~~pv~~~~Sg~~a~A~~la~~----- 126 (318)
T TIGR03123 53 DNVAVTMTGELADCFEDKAEGVEFILAAVESAFGS-PVSVFASDGGFVSAEEALTNPLDVAAANWLATAQLIAKR----- 126 (318)
T ss_pred ceEEEEeehhhhhhhcCHHHHHHHHHHHHHHhcCC-CeEEEecCCCCccHHHHHHhHHHHHHhhHHHHHHHHHhc-----
Confidence 45677778877654333444 457777776632 44332223344443332222 688733333332
Q ss_pred CCceeeeecCCCceEEEEecCC
Q 008515 222 TPTLGLLDLGGSSLQIVMEDDG 243 (563)
Q Consensus 222 ~~t~gvlDlGG~StQIaf~~~~ 243 (563)
.+....+||||-||-|+...++
T Consensus 127 ~~~~I~~DmGGTTtDi~~i~~G 148 (318)
T TIGR03123 127 IPECLFVDMGSTTTDIIPIIDG 148 (318)
T ss_pred CCCEEEEEcCccceeeEEecCC
Confidence 3568899999999999987654
No 55
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=38.70 E-value=74 Score=33.57 Aligned_cols=67 Identities=15% Similarity=0.191 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHhcCCCcccCceeEEcCchhHHHHHHHHHHHhhhcCCCCCCCCceeeeecCCCceEEEEecCC
Q 008515 170 ARWVLDDVEAVVKEHSFMYEKSWIRVLSGKEEAYYGWVALNYKMGSLGNSSITPTLGLLDLGGSSLQIVMEDDG 243 (563)
Q Consensus 170 ~~~iL~~v~~~l~~~~f~~~~~~v~VIsG~eEg~y~WiavNyllg~l~~~~~~~t~gvlDlGG~StQIaf~~~~ 243 (563)
++++++...+++++.|+ .+.+|+=+-=|++..+..++ ..+......+++.++|+|..+|++.+..++
T Consensus 134 ~k~~v~~~~~~~~~aGL-----~~~~vDv~~~Al~r~~~~~~--~~~~~~~~~~~~~lvdiG~~~t~~~i~~~g 200 (340)
T PF11104_consen 134 PKEIVESYVELFEEAGL-----KPVAVDVEAFALARLFEFLE--PQLPDEEDAETVALVDIGASSTTVIIFQNG 200 (340)
T ss_dssp EHHHHHHHHHHHHHTT------EEEEEEEHHHHGGGGGHHHH--HTST----T-EEEEEEE-SS-EEEEEEETT
T ss_pred cHHHHHHHHHHHHHcCC-----ceEEEeehHHHHHHHHHHHH--HhCCcccccceEEEEEecCCeEEEEEEECC
Confidence 45788888888888999 78999877777766655432 223222234678999999999999987543
No 56
>PRK10331 L-fuculokinase; Provisional
Probab=37.93 E-value=77 Score=35.02 Aligned_cols=19 Identities=32% Similarity=0.601 Sum_probs=17.3
Q ss_pred EEEEEEeccCceEEEEEEE
Q 008515 59 YTVVVDCGSTGTRVNVYEW 77 (563)
Q Consensus 59 Y~vVIDaGSsgtRl~Vy~~ 77 (563)
|.+.||+|+|++|..+|.-
T Consensus 3 ~~lgID~GTt~~Ka~l~d~ 21 (470)
T PRK10331 3 VILVLDCGATNVRAIAVDR 21 (470)
T ss_pred eEEEEecCCCceEEEEEcC
Confidence 7789999999999999964
No 57
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=36.15 E-value=23 Score=32.17 Aligned_cols=16 Identities=25% Similarity=0.607 Sum_probs=6.6
Q ss_pred hHHHHHHHHHHHHHHH
Q 008515 22 KWVFKFCTVVLAVVLL 37 (563)
Q Consensus 22 ~~~~~~~~~~~~~~l~ 37 (563)
||++.+++|+++++++
T Consensus 1 RW~l~~iii~~i~l~~ 16 (130)
T PF12273_consen 1 RWVLFAIIIVAILLFL 16 (130)
T ss_pred CeeeHHHHHHHHHHHH
Confidence 3555444333333333
No 58
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=35.65 E-value=60 Score=32.33 Aligned_cols=29 Identities=24% Similarity=0.386 Sum_probs=21.7
Q ss_pred HHHHhhhcCCCCCCCCceeeeecCCCceEEEEecCC
Q 008515 208 ALNYKMGSLGNSSITPTLGLLDLGGSSLQIVMEDDG 243 (563)
Q Consensus 208 avNyllg~l~~~~~~~t~gvlDlGG~StQIaf~~~~ 243 (563)
++.++|+ .++.+++|+|||.|-|+....+
T Consensus 132 Aaa~vL~-------l~dg~VVDiGGGTTGIsi~kkG 160 (277)
T COG4820 132 AAADVLQ-------LDDGGVVDIGGGTTGISIVKKG 160 (277)
T ss_pred hHHHHhc-------cCCCcEEEeCCCcceeEEEEcC
Confidence 4455664 3467999999999999987654
No 59
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=33.98 E-value=1.9e+02 Score=30.24 Aligned_cols=96 Identities=18% Similarity=0.115 Sum_probs=50.6
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCcCCCcccEEEEecHHHhcCChhhHHHHHHHHHHHHhcCCCcccCceeEEcCchhHHH
Q 008515 124 GNASGIRASLEPLILWAEWLVPLERQEETPIFVLATAGLRRLTVEDARWVLDDVEAVVKEHSFMYEKSWIRVLSGKEEAY 203 (563)
Q Consensus 124 ~~p~~~~~~l~~Ll~~A~~~IP~~~~~~tpv~l~ATAGmR~L~~~~~~~iL~~v~~~l~~~~f~~~~~~v~VIsG~eEg~ 203 (563)
.|.+.+.+.++.+++.+... .....|..+++-.. .....+++.+.++++ ..++ ..+.+++...=+.
T Consensus 71 ~d~~~~~~~l~~~~~~~~~~----~~~~~p~~vitvP~--~~~~~~r~~~~~a~~----~ag~----~~~~li~ep~Aaa 136 (336)
T PRK13928 71 ADYDVTEKMLKYFINKACGK----RFFSKPRIMICIPT--GITSVEKRAVREAAE----QAGA----KKVYLIEEPLAAA 136 (336)
T ss_pred ecHHHHHHHHHHHHHHHhcc----CCCCCCeEEEEeCC--CCCHHHHHHHHHHHH----HcCC----CceEecccHHHHH
Confidence 45667777777777654321 11233533333211 122223444444443 4566 2467777665554
Q ss_pred HHHHHHHHhhhcCCCCCCCCceeeeecCCCceEEEEecC
Q 008515 204 YGWVALNYKMGSLGNSSITPTLGLLDLGGSSLQIVMEDD 242 (563)
Q Consensus 204 y~WiavNyllg~l~~~~~~~t~gvlDlGG~StQIaf~~~ 242 (563)
|+ | |. .. .....+.++|+|||.|+++....
T Consensus 137 ~~-----~--g~-~~-~~~~~~lVvDiGggttdvsvv~~ 166 (336)
T PRK13928 137 IG-----A--GL-DI-SQPSGNMVVDIGGGTTDIAVLSL 166 (336)
T ss_pred HH-----c--CC-cc-cCCCeEEEEEeCCCeEEEEEEEe
Confidence 43 1 21 11 12345788999999999997653
No 60
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=33.38 E-value=65 Score=32.59 Aligned_cols=17 Identities=24% Similarity=0.294 Sum_probs=14.7
Q ss_pred EEEEeccCceEEEEEEE
Q 008515 61 VVVDCGSTGTRVNVYEW 77 (563)
Q Consensus 61 vVIDaGSsgtRl~Vy~~ 77 (563)
+=||+|+|.||+.++.-
T Consensus 1 lGIDgGgTkt~~vl~d~ 17 (271)
T PF01869_consen 1 LGIDGGGTKTKAVLVDE 17 (271)
T ss_dssp EEEEECSSEEEEEEEET
T ss_pred CEEeeChheeeeEEEeC
Confidence 35999999999999864
No 61
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=33.36 E-value=96 Score=34.78 Aligned_cols=20 Identities=20% Similarity=0.549 Sum_probs=17.9
Q ss_pred eEEEEEEeccCceEEEEEEE
Q 008515 58 YYTVVVDCGSTGTRVNVYEW 77 (563)
Q Consensus 58 ~Y~vVIDaGSsgtRl~Vy~~ 77 (563)
+|.+.||+|+|++|+.+|..
T Consensus 3 ~~~lgID~GTts~Ka~l~d~ 22 (520)
T PRK10939 3 SYLMALDAGTGSIRAVIFDL 22 (520)
T ss_pred cEEEEEecCCCceEEEEECC
Confidence 37789999999999999974
No 62
>COG2971 Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=32.95 E-value=84 Score=33.00 Aligned_cols=55 Identities=24% Similarity=0.218 Sum_probs=37.1
Q ss_pred ceEEEEEEeccCceEEEEEEEecCCccCCCccccccccCCCCccchhccccccccccccccchhccCCCH-HHHHHHHHH
Q 008515 57 SYYTVVVDCGSTGTRVNVYEWKKRGVESENLPVLVGTYPDNSTKSLLRKSSCQYHCLQTEPGLDKLVGNA-SGIRASLEP 135 (563)
Q Consensus 57 ~~Y~vVIDaGSsgtRl~Vy~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~pGLss~~~~p-~~~~~~l~~ 135 (563)
..|.+-||.|+|+||..|+.- .+ + ++- +-.-|=++|...+ |.+.+.+..
T Consensus 4 ~~~~lGVDGGGTkt~a~l~~~--~g----~---vlg---------------------~g~sGpAN~~~~~~e~A~~ni~~ 53 (301)
T COG2971 4 MPYFLGVDGGGTKTRAVLADE--DG----N---VLG---------------------RGKSGPANIQLVGKEEAVRNIKD 53 (301)
T ss_pred ccEEEEEccCCcceEEEEEcC--CC----c---EEE---------------------EeccCCceecccchHHHHHHHHH
Confidence 468899999999999999963 11 1 111 1122336676666 888778877
Q ss_pred HHHHHH
Q 008515 136 LILWAE 141 (563)
Q Consensus 136 Ll~~A~ 141 (563)
.+..|.
T Consensus 54 ai~~A~ 59 (301)
T COG2971 54 AIREAL 59 (301)
T ss_pred HHHHHH
Confidence 777766
No 63
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=32.11 E-value=90 Score=34.86 Aligned_cols=19 Identities=32% Similarity=0.534 Sum_probs=17.1
Q ss_pred EEEEEEeccCceEEEEEEE
Q 008515 59 YTVVVDCGSTGTRVNVYEW 77 (563)
Q Consensus 59 Y~vVIDaGSsgtRl~Vy~~ 77 (563)
|.+.||+|+|++|..||.-
T Consensus 3 ~~lgiDiGTts~Ka~l~d~ 21 (504)
T PTZ00294 3 YIGSIDQGTTSTRFIIFDE 21 (504)
T ss_pred EEEEEecCCCceEEEEECC
Confidence 6788999999999999964
No 64
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=31.17 E-value=1.1e+02 Score=33.67 Aligned_cols=19 Identities=32% Similarity=0.553 Sum_probs=17.1
Q ss_pred EEEEEEeccCceEEEEEEE
Q 008515 59 YTVVVDCGSTGTRVNVYEW 77 (563)
Q Consensus 59 Y~vVIDaGSsgtRl~Vy~~ 77 (563)
|.+.||+|+|++|+.|+..
T Consensus 2 ~ilgiD~GTss~K~~l~d~ 20 (465)
T TIGR02628 2 VILVLDCGATNLRAIAINR 20 (465)
T ss_pred eEEEEecCCCcEEEEEEcC
Confidence 6688999999999999975
No 65
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=30.75 E-value=1.8e+02 Score=27.66 Aligned_cols=62 Identities=18% Similarity=0.255 Sum_probs=40.3
Q ss_pred EEEEeccCceEEEEEEEecCCccCCCccccccccCCCCccchhccccccccccccccchhc-cCCCHHHHHHHHHHHHHH
Q 008515 61 VVVDCGSTGTRVNVYEWKKRGVESENLPVLVGTYPDNSTKSLLRKSSCQYHCLQTEPGLDK-LVGNASGIRASLEPLILW 139 (563)
Q Consensus 61 vVIDaGSsgtRl~Vy~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~pGLss-~~~~p~~~~~~l~~Ll~~ 139 (563)
+.||.||+.+++.+-+...++ .+ .++. +. ..-..|+.. -..|.+++.++++.+++.
T Consensus 2 ~~lDIGs~~ik~vv~~~~~~~----~~-~i~g-~~-----------------~~~s~gi~~G~I~d~~~~~~~I~~ai~~ 58 (187)
T smart00842 2 VGLDIGTSKIKALVAEVDEDG----EI-NVIG-VG-----------------EVPSRGIRKGVIVDIEAAARAIREAVEE 58 (187)
T ss_pred EEEEeccceEEEEEEEEcCCC----CE-EEEE-EE-----------------EecCCCccCcEEECHHHHHHHHHHHHHH
Confidence 689999999999999875321 12 1211 00 000123333 235789999999999999
Q ss_pred HHHhCC
Q 008515 140 AEWLVP 145 (563)
Q Consensus 140 A~~~IP 145 (563)
|++..+
T Consensus 59 ae~~~~ 64 (187)
T smart00842 59 AERMAG 64 (187)
T ss_pred HHHHhC
Confidence 998754
No 66
>PRK15027 xylulokinase; Provisional
Probab=30.28 E-value=1.3e+02 Score=33.42 Aligned_cols=62 Identities=11% Similarity=0.085 Sum_probs=35.5
Q ss_pred EEEEEeccCceEEEEEEEecCCccCCCccccccccCCCCccchhccccccccccccccchhccCCCHHHHHHHHHHHHHH
Q 008515 60 TVVVDCGSTGTRVNVYEWKKRGVESENLPVLVGTYPDNSTKSLLRKSSCQYHCLQTEPGLDKLVGNASGIRASLEPLILW 139 (563)
Q Consensus 60 ~vVIDaGSsgtRl~Vy~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~pGLss~~~~p~~~~~~l~~Ll~~ 139 (563)
.+.||+|+|++|..||.- ++ .+ +.+. .+.+......|| ....||+..-+.+..+++.
T Consensus 2 ~lgID~GTts~Ka~l~d~--~G----~v---va~~------------~~~~~~~~~~~g--~~eqd~~~~w~~~~~~~~~ 58 (484)
T PRK15027 2 YIGIDLGTSGVKVILLNE--QG----EV---VASQ------------TEKLTVSRPHPL--WSEQDPEQWWQATDRAMKA 58 (484)
T ss_pred EEEEEecccceEEEEEcC--CC----CE---EEEE------------eecccccCCCCC--ccccCHHHHHHHHHHHHHH
Confidence 478999999999999963 22 11 1110 001110112344 3456888877777777766
Q ss_pred HHHhC
Q 008515 140 AEWLV 144 (563)
Q Consensus 140 A~~~I 144 (563)
+.+..
T Consensus 59 l~~~~ 63 (484)
T PRK15027 59 LGDQH 63 (484)
T ss_pred HHHhC
Confidence 65543
No 67
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=29.45 E-value=1.4e+02 Score=35.24 Aligned_cols=75 Identities=15% Similarity=0.096 Sum_probs=41.5
Q ss_pred HHHHHHHhhhcCCCCC-CCCceeeeecCCCceEEEEec----CCCCCCCceEEEEecceeEEEEEEeeccccHHHHHHHH
Q 008515 205 GWVALNYKMGSLGNSS-ITPTLGLLDLGGSSLQIVMED----DGTGNDEHLIRSEIGSIEHRVLAYSLQEFGLNAAFDRA 279 (563)
Q Consensus 205 ~WiavNyllg~l~~~~-~~~t~gvlDlGG~StQIaf~~----~~~~~~~~~~~~~l~~~~~~ly~~S~LgyGln~Ar~r~ 279 (563)
.-+|+||.+-+-...+ ....+.+-|||.|||--+... .+...+....++++-|..|+ +++|..+.-.|+
T Consensus 196 ~a~Al~ygv~rRk~i~~~~q~~i~YDMGs~sT~Ativsy~~v~~k~~g~~~p~i~~~gvGfd------~tLGG~e~~~rL 269 (902)
T KOG0104|consen 196 TAVALNYGVFRRKEINETPQHYIFYDMGSGSTSATIVSYQLVKTKEQGGKQPQIQVLGVGFD------RTLGGLEMTMRL 269 (902)
T ss_pred hHHHhhhhhhccccCCCCceEEEEEecCCCceeEEEEEEEeeccccccCccceEEEEeeccC------CccchHHHHHHH
Confidence 4578899775422111 223456779999999766543 22222223334444444432 456777776676
Q ss_pred HHHHhh
Q 008515 280 VAMLSQ 285 (563)
Q Consensus 280 ~~~L~~ 285 (563)
..+|.+
T Consensus 270 r~~l~~ 275 (902)
T KOG0104|consen 270 RDHLAN 275 (902)
T ss_pred HHHHHH
Confidence 666654
No 68
>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism]
Probab=28.15 E-value=2.9e+02 Score=29.65 Aligned_cols=156 Identities=17% Similarity=0.155 Sum_probs=72.8
Q ss_pred EEEEEEeccCceEEEEEEEec-CCccCCCccccccccCCCCccchhccccccccccccccchhccCCCHHHHHHHHHHHH
Q 008515 59 YTVVVDCGSTGTRVNVYEWKK-RGVESENLPVLVGTYPDNSTKSLLRKSSCQYHCLQTEPGLDKLVGNASGIRASLEPLI 137 (563)
Q Consensus 59 Y~vVIDaGSsgtRl~Vy~~~~-~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~pGLss~~~~p~~~~~~l~~Ll 137 (563)
-.|-||+|.|.|.+..-+..- +-......|...-. .+.+.+.+..- ..|=.+.-.-+..++++.+ +-
T Consensus 6 lSVGIDiGTsTTQvifS~lel~Nmas~~~VPri~ii-----~kdi~~rS~i~-----FTPv~~q~~id~~alk~~v--~e 73 (473)
T COG4819 6 LSVGIDIGTSTTQVIFSKLELVNMASVSQVPRIEII-----KKDISWRSPIF-----FTPVDKQGGIDEAALKKLV--LE 73 (473)
T ss_pred eeeeeeccCceeeeeeeeeEEeecccccccceEEEE-----ecceeeeccee-----eeeecccCCccHHHHHHHH--HH
Confidence 347899999999987766542 11122234432211 11122221111 1232222233444444433 34
Q ss_pred HHHHHhCCCcCCCccc-EEEEecHHHhcCChhhHHHHHHHHHHHHhcCCCcc---cCceeEEcCchhHHHHHHHHHHHhh
Q 008515 138 LWAEWLVPLERQEETP-IFVLATAGLRRLTVEDARWVLDDVEAVVKEHSFMY---EKSWIRVLSGKEEAYYGWVALNYKM 213 (563)
Q Consensus 138 ~~A~~~IP~~~~~~tp-v~l~ATAGmR~L~~~~~~~iL~~v~~~l~~~~f~~---~~~~v~VIsG~eEg~y~WiavNyll 213 (563)
++++.-|-++....-- |.-.-||-- .|+..+++++...+. .|.+ ..+-=.||-|.--|.-.+
T Consensus 74 eY~~AGi~pesi~sGAvIITGEtArk-----~NA~~vl~alSg~aG--DFVVAtAGPdLESiIAGkGaGA~t~------- 139 (473)
T COG4819 74 EYQAAGIAPESIDSGAVIITGETARK-----RNARPVLMALSGSAG--DFVVATAGPDLESIIAGKGAGAQTL------- 139 (473)
T ss_pred HHHHcCCChhccccccEEEecccccc-----ccchHHHHHhhhccc--ceEEEecCCCHHHHhccCCccccch-------
Confidence 5555555444433333 333334432 355567777665332 3532 112223555554433211
Q ss_pred hcCCCCCCCCceeeeecCCCceEEEEecCCC
Q 008515 214 GSLGNSSITPTLGLLDLGGSSLQIVMEDDGT 244 (563)
Q Consensus 214 g~l~~~~~~~t~gvlDlGG~StQIaf~~~~~ 244 (563)
+..+.-.+.-+|+|||.|-+++-..+.
T Consensus 140 ----Seqr~t~v~NlDIGGGTtN~slFD~Gk 166 (473)
T COG4819 140 ----SEQRLTRVLNLDIGGGTTNYSLFDAGK 166 (473)
T ss_pred ----hhhhceEEEEEeccCCccceeeecccc
Confidence 011222345689999999999765443
No 69
>PRK09213 pur operon repressor; Provisional
Probab=27.92 E-value=90 Score=32.29 Aligned_cols=68 Identities=12% Similarity=0.112 Sum_probs=49.7
Q ss_pred chhccCCCHHHHHHHHHHHHHHHHHhCCCcCCCcccEEEEecHHHhcCCh---hhHHHHHHHHHHHHhcCC
Q 008515 118 GLDKLVGNASGIRASLEPLILWAEWLVPLERQEETPIFVLATAGLRRLTV---EDARWVLDDVEAVVKEHS 185 (563)
Q Consensus 118 GLss~~~~p~~~~~~l~~Ll~~A~~~IP~~~~~~tpv~l~ATAGmR~L~~---~~~~~iL~~v~~~l~~~~ 185 (563)
.|+.|++.-+.++.+|.+=+...++..-+...+.-.-.-.|..|.|..|. ++++++++.+.+.|.+..
T Consensus 25 ~l~~f~~~~~~aks~ised~~i~~~~~~~~~~g~~~t~~ga~ggv~~~p~~~~~~a~~~~~~L~~~L~~~~ 95 (271)
T PRK09213 25 SLTFFAERYGAAKSSISEDLVIIKETFEKQGIGTLETVPGAAGGVKYIPSISEEEAREFVEELCERLSEPD 95 (271)
T ss_pred cHHHHHHHhccccchhhhhHHHHHHHHHhcCCceEEEeCCCCCCeEEEcCCCHHHHHHHHHHHHHHHHhCC
Confidence 47777776666666666555555555545666766777899999999885 678899999999887543
No 70
>PF15102 TMEM154: TMEM154 protein family
Probab=25.67 E-value=49 Score=31.00 Aligned_cols=30 Identities=13% Similarity=0.273 Sum_probs=13.0
Q ss_pred cccchHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 008515 513 LMSSPIFVFVFLLFLLFIVYCGQIKLPMPGRK 544 (563)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (563)
|.+.|.+|+++||+++++++. ...++..|+
T Consensus 60 mIlIP~VLLvlLLl~vV~lv~--~~kRkr~K~ 89 (146)
T PF15102_consen 60 MILIPLVLLVLLLLSVVCLVI--YYKRKRTKQ 89 (146)
T ss_pred EEeHHHHHHHHHHHHHHHhee--EEeecccCC
Confidence 344454555544444433322 334444444
No 71
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=25.27 E-value=1.2e+02 Score=33.96 Aligned_cols=19 Identities=37% Similarity=0.602 Sum_probs=16.6
Q ss_pred EEEEEEeccCceEEEEEEE
Q 008515 59 YTVVVDCGSTGTRVNVYEW 77 (563)
Q Consensus 59 Y~vVIDaGSsgtRl~Vy~~ 77 (563)
|.+.||+|+|++|+.|+.-
T Consensus 1 ~~lgiDiGtt~~K~~l~d~ 19 (505)
T TIGR01314 1 YMIGVDIGTTSTKAVLFEE 19 (505)
T ss_pred CEEEEeccccceEEEEEcC
Confidence 4678999999999999963
No 72
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=25.04 E-value=1.6e+02 Score=31.54 Aligned_cols=66 Identities=15% Similarity=0.186 Sum_probs=46.1
Q ss_pred HHHHHHHHHHhcCCCcccCceeEEcCchhHHHHHHHHHHHhhhcCCCCCCCCceeeeecCCCceEEEEecCCC
Q 008515 172 WVLDDVEAVVKEHSFMYEKSWIRVLSGKEEAYYGWVALNYKMGSLGNSSITPTLGLLDLGGSSLQIVMEDDGT 244 (563)
Q Consensus 172 ~iL~~v~~~l~~~~f~~~~~~v~VIsG~eEg~y~WiavNyllg~l~~~~~~~t~gvlDlGG~StQIaf~~~~~ 244 (563)
+..+.--+.++.-|+ .+.||+=+.=|.+--++ -+++.++..+...++.++|+|+.|+++.+..++.
T Consensus 149 E~v~~ri~a~~~AGl-----~~~vlDV~~fAl~ra~~--~~~~~~~~~~a~~~vav~~Igat~s~l~vi~~gk 214 (354)
T COG4972 149 EVVESRIDAFELAGL-----EPKVLDVESFALLRAYR--LLASQFGPEEAAMKVAVFDIGATSSELLVIQDGK 214 (354)
T ss_pred hhhHHHHHHHHHcCC-----CceEEehHHHHHHHHHH--HHHHHhCCchhhhhheeeeecccceEEEEEECCe
Confidence 444444455556788 68899988877776665 3556666543334468999999999999986653
No 73
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=24.66 E-value=62 Score=36.23 Aligned_cols=22 Identities=18% Similarity=0.409 Sum_probs=19.4
Q ss_pred ceEEEEEEeccCceEEEEEEEe
Q 008515 57 SYYTVVVDCGSTGTRVNVYEWK 78 (563)
Q Consensus 57 ~~Y~vVIDaGSsgtRl~Vy~~~ 78 (563)
..|.++||+|.|++|..+|.-+
T Consensus 3 ~~~~lgIDiGTt~~Kavl~d~~ 24 (502)
T COG1070 3 MKYVLGIDIGTTSVKAVLFDED 24 (502)
T ss_pred ccEEEEEEcCCCcEEEEEEeCC
Confidence 3688999999999999999764
No 74
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=23.88 E-value=1.5e+02 Score=32.86 Aligned_cols=19 Identities=32% Similarity=0.644 Sum_probs=17.0
Q ss_pred EEEEEEeccCceEEEEEEE
Q 008515 59 YTVVVDCGSTGTRVNVYEW 77 (563)
Q Consensus 59 Y~vVIDaGSsgtRl~Vy~~ 77 (563)
|.+.||+|+|++|+.||.-
T Consensus 2 ~~lgiDiGtt~iKa~l~d~ 20 (493)
T TIGR01311 2 YILAIDQGTTSSRAIVFDK 20 (493)
T ss_pred eEEEEecCCCceEEEEECC
Confidence 6788999999999999963
No 75
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=23.08 E-value=69 Score=36.14 Aligned_cols=19 Identities=26% Similarity=0.396 Sum_probs=17.1
Q ss_pred EEEEEEeccCceEEEEEEE
Q 008515 59 YTVVVDCGSTGTRVNVYEW 77 (563)
Q Consensus 59 Y~vVIDaGSsgtRl~Vy~~ 77 (563)
|.+.||+|+|++|..||..
T Consensus 2 ~~lgiD~GTss~Ka~l~d~ 20 (536)
T TIGR01234 2 YAIGVDFGTLSGRALAVDV 20 (536)
T ss_pred eEEEEecCCCceEEEEEEC
Confidence 6788999999999999973
No 76
>PF13941 MutL: MutL protein
Probab=23.02 E-value=1.7e+02 Score=32.56 Aligned_cols=17 Identities=47% Similarity=0.735 Sum_probs=15.9
Q ss_pred EEEEeccCceEEEEEEE
Q 008515 61 VVVDCGSTGTRVNVYEW 77 (563)
Q Consensus 61 vVIDaGSsgtRl~Vy~~ 77 (563)
+++|+|||-|++.+|..
T Consensus 3 L~~DiGST~Tk~~l~d~ 19 (457)
T PF13941_consen 3 LVVDIGSTYTKVTLFDL 19 (457)
T ss_pred EEEEeCCcceEEeEEec
Confidence 79999999999999984
No 77
>PTZ00288 glucokinase 1; Provisional
Probab=22.89 E-value=3.5e+02 Score=29.64 Aligned_cols=24 Identities=25% Similarity=0.174 Sum_probs=20.6
Q ss_pred CceEEEEEEeccCceEEEEEEEec
Q 008515 56 GSYYTVVVDCGSTGTRVNVYEWKK 79 (563)
Q Consensus 56 ~~~Y~vVIDaGSsgtRl~Vy~~~~ 79 (563)
...|.+.+|+|-|++|+-+|+..+
T Consensus 24 ~~~~~~~~DiGgt~~R~~~~~~~~ 47 (405)
T PTZ00288 24 SGPIFVGCDVGGTNARVGFAREVQ 47 (405)
T ss_pred cCCeEEEEEecCCceEEEEEeccC
Confidence 346889999999999999998853
No 78
>PF09680 Tiny_TM_bacill: Protein of unknown function (Tiny_TM_bacill); InterPro: IPR010070 This entry represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=22.78 E-value=65 Score=20.88 Aligned_cols=17 Identities=35% Similarity=0.458 Sum_probs=9.9
Q ss_pred hHHHHHHHHHHHHHHHH
Q 008515 517 PIFVFVFLLFLLFIVYC 533 (563)
Q Consensus 517 ~~~~~~~~~~~~~~~~~ 533 (563)
.+.|+++|.++|+|+=|
T Consensus 5 ~FalivVLFILLiIvG~ 21 (24)
T PF09680_consen 5 GFALIVVLFILLIIVGA 21 (24)
T ss_pred cchhHHHHHHHHHHhcc
Confidence 44556666666666554
No 79
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=21.44 E-value=1.3e+02 Score=29.98 Aligned_cols=25 Identities=28% Similarity=0.465 Sum_probs=17.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHH
Q 008515 17 EFSLFKWVFKFCTVVLAVVLLIVGV 41 (563)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~l~~~~~ 41 (563)
+-...+..+++|+||+++|+|+..+
T Consensus 122 Een~~K~amLIClIIIAVLfLICT~ 146 (227)
T PF05399_consen 122 EENNNKMAMLICLIIIAVLFLICTL 146 (227)
T ss_pred hcCccchhHHHHHHHHHHHHHHHHH
Confidence 3444577888999888888876433
No 80
>COG5277 Actin and related proteins [Cytoskeleton]
Probab=21.32 E-value=9e+02 Score=26.87 Aligned_cols=85 Identities=18% Similarity=0.102 Sum_probs=52.4
Q ss_pred EEEecHHHhcCChhhHHHHHHHHHHHHhcCCCcccCceeEEcCchhHHHHHHHHHHHhhhcCCCCCCCCceeeeecCCCc
Q 008515 155 FVLATAGLRRLTVEDARWVLDDVEAVVKEHSFMYEKSWIRVLSGKEEAYYGWVALNYKMGSLGNSSITPTLGLLDLGGSS 234 (563)
Q Consensus 155 ~l~ATAGmR~L~~~~~~~iL~~v~~~l~~~~f~~~~~~v~VIsG~eEg~y~WiavNyllg~l~~~~~~~t~gvlDlGG~S 234 (563)
-++.|..... +.++++.+.+.+.+-+.--+|.+ .- .-+-+.|..|..+ .+..|+|+|-+.
T Consensus 108 pllltep~~n-~~~~re~~~e~~fE~~~vp~~~~----------~~----~~~l~~ya~g~~~-----~~g~ViD~G~~~ 167 (444)
T COG5277 108 PLLLTEPPLN-PPSNREKITELLFETLNVPALYL----------AI----QAVLSLYASGSSD-----ETGLVIDSGDSV 167 (444)
T ss_pred ceEEeccCCC-cHHHHHHHHHHHHHhcCCcceEe----------eH----HHHHHHHhcCCCC-----CceEEEEcCCCc
Confidence 3455666444 34788888888877443222311 11 2234566665421 377899999999
Q ss_pred eEEEEecCCCCCCCceEEEEeccee
Q 008515 235 LQIVMEDDGTGNDEHLIRSEIGSIE 259 (563)
Q Consensus 235 tQIaf~~~~~~~~~~~~~~~l~~~~ 259 (563)
|-|+=..++........++.++|..
T Consensus 168 t~v~PV~DG~~l~~a~~ri~~gG~~ 192 (444)
T COG5277 168 THVIPVVDGIVLPKAVKRIDIGGRD 192 (444)
T ss_pred eeeEeeeccccccccceeeecCcHH
Confidence 9999777776655555566777654
No 81
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=20.98 E-value=50 Score=29.00 Aligned_cols=42 Identities=26% Similarity=0.374 Sum_probs=23.2
Q ss_pred HhcCChhhHHHHHHHHHHHHhcCCCccc--CceeEEcCchhHHHH
Q 008515 162 LRRLTVEDARWVLDDVEAVVKEHSFMYE--KSWIRVLSGKEEAYY 204 (563)
Q Consensus 162 mR~L~~~~~~~iL~~v~~~l~~~~f~~~--~~~v~VIsG~eEg~y 204 (563)
+|.-.++.++.+++.+... ...+..+. .-.++|++|++|-.|
T Consensus 42 VRf~~~~~A~~a~~~~~~~-~~~~~~i~~~~~~~~vLeGeeE~~Y 85 (105)
T PF08777_consen 42 VRFKTPEAAQKALEKLKEA-NDGKLKIKGKEVTLEVLEGEEEEEY 85 (105)
T ss_dssp EEESS---HHHHHHHHHHT-TTS-B-TTSSSEEEE---HHHHHHH
T ss_pred EEECCcchHHHHHHHHHhc-cCCceEEcCceEEEEECCCHHHHHH
Confidence 4666666788899998875 22233222 236899999999887
No 82
>PRK04123 ribulokinase; Provisional
Probab=20.96 E-value=81 Score=35.60 Aligned_cols=20 Identities=20% Similarity=0.398 Sum_probs=17.8
Q ss_pred eEEEEEEeccCceEEEEEEE
Q 008515 58 YYTVVVDCGSTGTRVNVYEW 77 (563)
Q Consensus 58 ~Y~vVIDaGSsgtRl~Vy~~ 77 (563)
.|.+.||+|+|++|+.||..
T Consensus 3 ~~~lgiD~GTts~Ka~l~d~ 22 (548)
T PRK04123 3 AYVIGLDFGTDSVRALLVDC 22 (548)
T ss_pred cEEEEEecCCCceEEEEEEC
Confidence 37789999999999999975
Done!