BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008516
(563 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KYC|B Chain B, Human Sumo E1 Complex With A Sumo1-Amp Mimic
Length = 660
Score = 369 bits (946), Expect = e-102, Method: Compositional matrix adjust.
Identities = 202/480 (42%), Positives = 299/480 (62%), Gaps = 35/480 (7%)
Query: 8 EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSK 67
EA+ G +VL+VGAGGIGCELLK L L+GF I +ID+DTI+VSNLNRQFLF++ HVG+SK
Sbjct: 33 EAVAGGRVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKHVGRSK 92
Query: 68 AKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAA 127
A+VA+++VL+F P+ +I A+H ++ +P +NVEFF+QF +V+N LDN AR HVNR+CLAA
Sbjct: 93 AQVAKESVLQFYPKANIVAYHDSIMNPDYNVEFFRQFILVMNALDNRAARNHVNRMCLAA 152
Query: 128 DVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKFVHCIVWAKDL 187
DVPL+ESGT G+LGQVT KG TECYEC PKP +T+P CTI +TPS+ +HCIVWAK
Sbjct: 153 DVPLIESGTAGYLGQVTTIKKGVTECYECHPKPTQRTFPGCTIRNTPSEPIHCIVWAK-Y 211
Query: 188 LFAKLFGDKNQENDLNVRXXXXXXXXXXEDVFVRRK----DEDIDQYGRRIYDHVFGY-- 241
LF +LFG+++ + +++ + R + D DI + + + GY
Sbjct: 212 LFNQLFGEEDADQEVSPDRADPEAAWEPTEAEARARACNEDGDIKRISTKEWAKSTGYDP 271
Query: 242 ----------NIEVASSNEETWKNRNRPKPIYSADVMPENLTEQNGNVAKNCVVDTSSVS 291
+I + ++ W+ R P P+ A+V + E N + +N
Sbjct: 272 VKLFTKLFKDDIRYLLTMDKLWRKRKPPVPLDWAEVQSQG-EETNASDQQN--------- 321
Query: 292 AMASLGLKNPQDTWTLLESSRIF---LEALKLFFAKREKEIGNLSFDKDDQLAVEFVTAA 348
LGLK+ Q + +R+F +E L++ A++ + L +DKDD A++FVT+A
Sbjct: 322 -EPQLGLKD-QQVLDVKSYARLFSKSIETLRVHLAEK-GDGAELIWDKDDPSAMDFVTSA 378
Query: 349 ANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLLKDTDKYRMTYC 408
AN+R F +++ S F+ K +AGNI+ A+ATTNA+IAGLIV+E +K+L D+ R +
Sbjct: 379 ANLRMHIFSMNMKSRFDIKSMAGNIIPAIATTNAVIAGLIVLEGLKILSGKIDQCRTIFL 438
Query: 409 LEHIT-KKMLLMPVEPYEPNKSCYVCSETP-LSLEINTSRSKLRDFVEKIVKAKLGINFP 466
+ +K LL+P PN +CYVC+ P +++ +N + + +KIVK K + P
Sbjct: 439 NKQPNPRKKLLVPCALDPPNPNCYVCASKPEVTVRLNVHKVTVLTLQDKIVKEKFAMVAP 498
>pdb|3KYD|B Chain B, Human Sumo E1~sumo1-amp Tetrahedral Intermediate Mimic
Length = 551
Score = 368 bits (945), Expect = e-102, Method: Compositional matrix adjust.
Identities = 202/480 (42%), Positives = 299/480 (62%), Gaps = 35/480 (7%)
Query: 8 EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSK 67
EA+ G +VL+VGAGGIGCELLK L L+GF I +ID+DTI+VSNLNRQFLF++ HVG+SK
Sbjct: 15 EAVAGGRVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKHVGRSK 74
Query: 68 AKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAA 127
A+VA+++VL+F P+ +I A+H ++ +P +NVEFF+QF +V+N LDN AR HVNR+CLAA
Sbjct: 75 AQVAKESVLQFYPKANIVAYHDSIMNPDYNVEFFRQFILVMNALDNRAARNHVNRMCLAA 134
Query: 128 DVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKFVHCIVWAKDL 187
DVPL+ESGT G+LGQVT KG TECYEC PKP +T+P CTI +TPS+ +HCIVWAK
Sbjct: 135 DVPLIESGTAGYLGQVTTIKKGVTECYECHPKPTQRTFPGCTIRNTPSEPIHCIVWAK-Y 193
Query: 188 LFAKLFGDKNQENDLNVRXXXXXXXXXXEDVFVRRK----DEDIDQYGRRIYDHVFGY-- 241
LF +LFG+++ + +++ + R + D DI + + + GY
Sbjct: 194 LFNQLFGEEDADQEVSPDRADPEAAWEPTEAEARARACNEDGDIKRISTKEWAKSTGYDP 253
Query: 242 ----------NIEVASSNEETWKNRNRPKPIYSADVMPENLTEQNGNVAKNCVVDTSSVS 291
+I + ++ W+ R P P+ A+V + E N + +N
Sbjct: 254 VKLFTKLFKDDIRYLLTMDKLWRKRKPPVPLDWAEVQSQG-EETNASDQQN--------- 303
Query: 292 AMASLGLKNPQDTWTLLESSRIF---LEALKLFFAKREKEIGNLSFDKDDQLAVEFVTAA 348
LGLK+ Q + +R+F +E L++ A++ + L +DKDD A++FVT+A
Sbjct: 304 -EPQLGLKD-QQVLDVKSYARLFSKSIETLRVHLAEK-GDGAELIWDKDDPSAMDFVTSA 360
Query: 349 ANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLLKDTDKYRMTYC 408
AN+R F +++ S F+ K +AGNI+ A+ATTNA+IAGLIV+E +K+L D+ R +
Sbjct: 361 ANLRMHIFSMNMKSRFDIKSMAGNIIPAIATTNAVIAGLIVLEGLKILSGKIDQCRTIFL 420
Query: 409 LEHIT-KKMLLMPVEPYEPNKSCYVCSETP-LSLEINTSRSKLRDFVEKIVKAKLGINFP 466
+ +K LL+P PN +CYVC+ P +++ +N + + +KIVK K + P
Sbjct: 421 NKQPNPRKKLLVPCALDPPNPNCYVCASKPEVTVRLNVHKVTVLTLQDKIVKEKFAMVAP 480
>pdb|1Y8Q|B Chain B, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex
pdb|1Y8Q|D Chain D, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex
pdb|1Y8R|B Chain B, Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Complex
pdb|1Y8R|E Chain E, Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Complex
Length = 640
Score = 366 bits (939), Expect = e-101, Method: Compositional matrix adjust.
Identities = 205/484 (42%), Positives = 302/484 (62%), Gaps = 36/484 (7%)
Query: 5 RQL-EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHV 63
R+L EA+ G +VL+VGAGGIGCELLK L L+GF I +ID+DTI+VSNLNRQFLF++ HV
Sbjct: 9 RELAEAVAGGRVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKHV 68
Query: 64 GQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRL 123
G+SKA+VA+++VL+F P+ +I A+H ++ +P +NVEFF+QF +V+N LDN AR HVNR+
Sbjct: 69 GRSKAQVAKESVLQFYPKANIVAYHDSIMNPDYNVEFFRQFILVMNALDNRAARNHVNRM 128
Query: 124 CLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKFVHCIVW 183
CLAADVPL+ESGT G+LGQVT KG TECYEC PKP +T+P TI +TPS+ +HCIVW
Sbjct: 129 CLAADVPLIESGTAGYLGQVTTIKKGVTECYECHPKPTQRTFPGATIRNTPSEPIHCIVW 188
Query: 184 AKDLLFAKLFGDKNQENDLNVRXXXXXXXXXXEDVFVRRKDEDIDQYGRRI--------- 234
AK LF +LFG+++ + +++ + R + + D +RI
Sbjct: 189 AK-YLFNQLFGEEDADQEVSPDRADPEAAWEPTEAEARARASNEDGDIKRISTKEWAKST 247
Query: 235 -YDHV------FGYNIEVASSNEETWKNRNRPKPIYSADVMPENLTEQNGNVAKNCVVDT 287
YD V F +I + ++ W+ R P P+ A+V + E N + +N
Sbjct: 248 GYDPVKLFTKLFKDDIRYLLTMDKLWRKRKPPVPLDWAEVQSQG-EETNASDQQN----- 301
Query: 288 SSVSAMASLGLKNPQDTWTLLESSRIF---LEALKLFFAKREKEIGNLSFDKDDQLAVEF 344
LGLK+ Q + +R+F +E L++ A++ + L +DKDD A++F
Sbjct: 302 -----EPQLGLKD-QQVLDVKSYARLFSKSIETLRVHLAEK-GDGAELIWDKDDPSAMDF 354
Query: 345 VTAAANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLLKDTDKYR 404
VT+AAN+R F +++ S F+ K +AGNI+ A+ATTNA+IAGLIV+E +K+L D+ R
Sbjct: 355 VTSAANLRMHIFSMNMKSRFDIKSMAGNIIPAIATTNAVIAGLIVLEGLKILSGKIDQCR 414
Query: 405 MTYCLEHIT-KKMLLMPVEPYEPNKSCYVCSETP-LSLEINTSRSKLRDFVEKIVKAKLG 462
+ + +K LL+P PN +CYVC+ P +++ +N + + +KIVK K
Sbjct: 415 TIFLNKQPNPRKKLLVPCALDPPNPNCYVCASKPEVTVRLNVHKVTVLTLQDKIVKEKFA 474
Query: 463 INFP 466
+ P
Sbjct: 475 MVAP 478
>pdb|4II2|A Chain A, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1)
In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg
pdb|4II3|A Chain A, Crystal Structure Of S. Pombe Ubiquitin Activating Enzyme
1 (uba1) In Complex With Ubiquitin And Atp/mg
pdb|4II3|C Chain C, Crystal Structure Of S. Pombe Ubiquitin Activating Enzyme
1 (uba1) In Complex With Ubiquitin And Atp/mg
Length = 1001
Score = 174 bits (441), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 133/452 (29%), Positives = 210/452 (46%), Gaps = 63/452 (13%)
Query: 8 EAIKGAKVLMVGAGGIGCELLKTLALSGFQD-----IHIIDMDTIEVSNLNRQFLFRQSH 62
E I +VGAG IGCE+LK A+ G I + DMD+IE SNLNRQFLFR
Sbjct: 412 EKIASLSTFLVGAGAIGCEMLKNWAMMGVATGESGHISVTDMDSIEKSNLNRQFLFRPRD 471
Query: 63 VGQSKAKVARDAVLKFRPQMS--ITAHHANV---KDPKFNVEFFKQFNVVLNGLDNLDAR 117
VG+ K++ A AV P ++ IT++ V + F EFF++ ++V N LDN++AR
Sbjct: 472 VGKLKSECASTAVSIMNPSLTGKITSYQERVGPESEGIFGDEFFEKLSLVTNALDNVEAR 531
Query: 118 RHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKF 177
+V+R C+ + PL+ESGT G G V V TE Y P K++P+CT+ + P++
Sbjct: 532 MYVDRRCVFFEKPLLESGTLGTKGNTQVVVPHLTESYGSSQDPPEKSFPICTLKNFPNRI 591
Query: 178 VHCIVWAKDL---LFAKLFGDKNQ--------ENDLNVRXXXXXXXXXXEDVFVRRKD-- 224
H I WA+DL LF + + N E L D V K
Sbjct: 592 EHTIAWARDLFEGLFKQPIDNVNMYLSSPNFLETSLKTSSNPREVLENIRDYLVTEKPLS 651
Query: 225 -EDIDQYGRRIYDHVFGYNIE----------VASSNEETWKNRNR-PKP----------- 261
E+ + R +D F NI+ V S+ + W R P P
Sbjct: 652 FEECIMWARLQFDKFFNNNIQQLLFNFPKDSVTSTGQPFWSGPKRAPTPLSFDIHNREHF 711
Query: 262 ---IYSADVMPENL---TEQNGNVAKNCVVDTSSVSAMASLGLK-----NPQDTWTLLES 310
+ +A + N +E + + + + + G+K N + T
Sbjct: 712 DFIVAAASLYAFNYGLKSETDPAIYERVLAGYNPPPFAPKSGIKIQVNENEEAPETAANK 771
Query: 311 SRIFLEALKLFFAKREKEIG----NLSFDKDDQL--AVEFVTAAANIRAASFGISLHSLF 364
+ L+++ +G F+KDD ++F+TAA+N+RA ++ I+ F
Sbjct: 772 DKQELKSIADSLPPPSSLVGFRLTPAEFEKDDDSNHHIDFITAASNLRAMNYDITPADRF 831
Query: 365 EAKGIAGNIVHAVATTNAIIAGLIVIEAIKVL 396
+ K +AG IV A+ T+ A+++GL+ +E +K++
Sbjct: 832 KTKFVAGKIVPAMCTSTAVVSGLVCLELVKLV 863
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/143 (18%), Positives = 65/143 (45%), Gaps = 6/143 (4%)
Query: 1 MVSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQ 60
++ ++ + + VL++G G+G E+ K + L+G + + + D + +L+ Q+ +
Sbjct: 15 VLGHEAMKQMSQSNVLIIGCKGLGVEIAKNVCLAGVKSVTLYDPQPTRIEDLSSQYFLTE 74
Query: 61 SHVGQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHV 120
+G +AKV + + + ++ V D + + E+ K F V+ +L + +
Sbjct: 75 DDIGVPRAKVTVSKLAELNQYVPVS-----VVD-ELSTEYLKNFKCVVVTETSLTKQLEI 128
Query: 121 NRLCLAADVPLVESGTTGFLGQV 143
N + + + + G G +
Sbjct: 129 NDFTHKNHIAYIAADSRGLFGSI 151
>pdb|2NVU|B Chain B, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A
Trapped Ubiquitin-Like Protein Activation Complex
Length = 805
Score = 162 bits (410), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 84/192 (43%), Positives = 121/192 (63%), Gaps = 16/192 (8%)
Query: 14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARD 73
KVL++GAGG+GCELLK LALSGF+ IH+IDMDTI+VSNLNRQFLFR +G+ KA+VA +
Sbjct: 413 KVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAE 472
Query: 74 AVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCL-------- 125
+ P ++ H ++D FN F++QF++++ GLD++ ARR +N + +
Sbjct: 473 FLNDRVPNCNVVPHFNKIQD--FNDTFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDG 530
Query: 126 ----AADVPLVESGTTGFLGQVTVHVKGKTECYEC--QPKPAPKTYPVCTITSTPSKFVH 179
++ VPL++ GT GF G V + G T C EC + P +P+CTI S P H
Sbjct: 531 VLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMCTIASMPRLPEH 590
Query: 180 CIVWAKDLLFAK 191
CI + + L + K
Sbjct: 591 CIEYVRMLQWPK 602
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 78/176 (44%), Gaps = 32/176 (18%)
Query: 315 LEALKLFFAKREKEIG-NLSFDKDDQLAVEFVTAAANIRAASFGISLHSLFEAKGIAGNI 373
+E +++ +E+ G + D DD ++++ + RA+ + I + +G+ I
Sbjct: 592 IEYVRMLQWPKEQPFGEGVPLDGDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRI 651
Query: 374 VHAVATTNAIIAGLIVIEAIKV------------LLKDTDKYRMTYCLEHITKKMLLMPV 421
+ AVA+TNA+IA + E K+ + D D TY E
Sbjct: 652 IPAVASTNAVIAAVCATEVFKIATSAYIPLNNYLVFNDVDGL-YTYTFEA---------- 700
Query: 422 EPYEPNKSCYVCSETPLSLEINTSRSKLRDFVEKIV-KAKLGINFPLI---MHGSN 473
E ++C CS+ P +++ + S +KL++ ++ + A L + P I + G N
Sbjct: 701 ---ERKENCPACSQLPQNIQFSPS-AKLQEVLDYLTNSASLQMKSPAITATLEGKN 752
>pdb|1TT5|B Chain B, Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2
Interaction Required For Optimal Conjugation Of The
Ubiquitin-Like Protein Nedd8
pdb|1TT5|D Chain D, Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2
Interaction Required For Optimal Conjugation Of The
Ubiquitin-Like Protein Nedd8
Length = 434
Score = 162 bits (409), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 84/192 (43%), Positives = 121/192 (63%), Gaps = 16/192 (8%)
Query: 14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARD 73
KVL++GAGG+GCELLK LALSGF+ IH+IDMDTI+VSNLNRQFLFR +G+ KA+VA +
Sbjct: 42 KVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAE 101
Query: 74 AVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCL-------- 125
+ P ++ H ++D FN F++QF++++ GLD++ ARR +N + +
Sbjct: 102 FLNDRVPNCNVVPHFNKIQD--FNDTFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDG 159
Query: 126 ----AADVPLVESGTTGFLGQVTVHVKGKTECYEC--QPKPAPKTYPVCTITSTPSKFVH 179
++ VPL++ GT GF G V + G T C EC + P +P+CTI S P H
Sbjct: 160 VLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMCTIASMPRLPEH 219
Query: 180 CIVWAKDLLFAK 191
CI + + L + K
Sbjct: 220 CIEYVRMLQWPK 231
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 78/176 (44%), Gaps = 32/176 (18%)
Query: 315 LEALKLFFAKREKEIG-NLSFDKDDQLAVEFVTAAANIRAASFGISLHSLFEAKGIAGNI 373
+E +++ +E+ G + D DD ++++ + RA+ + I + +G+ I
Sbjct: 221 IEYVRMLQWPKEQPFGEGVPLDGDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRI 280
Query: 374 VHAVATTNAIIAGLIVIEAIKV------------LLKDTDKYRMTYCLEHITKKMLLMPV 421
+ AVA+TNA+IA + E K+ + D D TY E
Sbjct: 281 IPAVASTNAVIAAVCATEVFKIATSAYIPLNNYLVFNDVDGL-YTYTFEA---------- 329
Query: 422 EPYEPNKSCYVCSETPLSLEINTSRSKLRDFVEKIV-KAKLGINFPLI---MHGSN 473
E ++C CS+ P +++ + S +KL++ ++ + A L + P I + G N
Sbjct: 330 ---ERKENCPACSQLPQNIQFSPS-AKLQEVLDYLTNSASLQMKSPAITATLEGKN 381
>pdb|3GZN|B Chain B, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8
And Mln4924
pdb|3GZN|D Chain D, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8
And Mln4924
Length = 463
Score = 162 bits (409), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 84/192 (43%), Positives = 121/192 (63%), Gaps = 16/192 (8%)
Query: 14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARD 73
KVL++GAGG+GCELLK LALSGF+ IH+IDMDTI+VSNLNRQFLFR +G+ KA+VA +
Sbjct: 71 KVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAE 130
Query: 74 AVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCL-------- 125
+ P ++ H ++D FN F++QF++++ GLD++ ARR +N + +
Sbjct: 131 FLNDRVPNCNVVPHFNKIQD--FNDTFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDG 188
Query: 126 ----AADVPLVESGTTGFLGQVTVHVKGKTECYEC--QPKPAPKTYPVCTITSTPSKFVH 179
++ VPL++ GT GF G V + G T C EC + P +P+CTI S P H
Sbjct: 189 VLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMCTIASMPRLPEH 248
Query: 180 CIVWAKDLLFAK 191
CI + + L + K
Sbjct: 249 CIEYVRMLQWPK 260
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 78/176 (44%), Gaps = 32/176 (18%)
Query: 315 LEALKLFFAKREKEIG-NLSFDKDDQLAVEFVTAAANIRAASFGISLHSLFEAKGIAGNI 373
+E +++ +E+ G + D DD ++++ + RA+ + I + +G+ I
Sbjct: 250 IEYVRMLQWPKEQPFGEGVPLDGDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRI 309
Query: 374 VHAVATTNAIIAGLIVIEAIKV------------LLKDTDKYRMTYCLEHITKKMLLMPV 421
+ AVA+TNA+IA + E K+ + D D TY E
Sbjct: 310 IPAVASTNAVIAAVCATEVFKIATSAYIPLNNYLVFNDVDGL-YTYTFEA---------- 358
Query: 422 EPYEPNKSCYVCSETPLSLEINTSRSKLRDFVEKIV-KAKLGINFPLI---MHGSN 473
E ++C CS+ P +++ + S +KL++ ++ + A L + P I + G N
Sbjct: 359 ---ERKENCPACSQLPQNIQFSPS-AKLQEVLDYLTNSASLQMKSPAITATLEGKN 410
>pdb|1YOV|B Chain B, Insights Into The Ubiquitin Transfer Cascade From The
Refined Structure Of The Activating Enzyme For Nedd8
pdb|1YOV|D Chain D, Insights Into The Ubiquitin Transfer Cascade From The
Refined Structure Of The Activating Enzyme For Nedd8
Length = 444
Score = 162 bits (409), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 84/192 (43%), Positives = 121/192 (63%), Gaps = 16/192 (8%)
Query: 14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARD 73
KVL++GAGG+GCELLK LALSGF+ IH+IDMDTI+VSNLNRQFLFR +G+ KA+VA +
Sbjct: 52 KVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAE 111
Query: 74 AVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCL-------- 125
+ P ++ H ++D FN F++QF++++ GLD++ ARR +N + +
Sbjct: 112 FLNDRVPNCNVVPHFNKIQD--FNDTFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDG 169
Query: 126 ----AADVPLVESGTTGFLGQVTVHVKGKTECYEC--QPKPAPKTYPVCTITSTPSKFVH 179
++ VPL++ GT GF G V + G T C EC + P +P+CTI S P H
Sbjct: 170 VLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMCTIASMPRLPEH 229
Query: 180 CIVWAKDLLFAK 191
CI + + L + K
Sbjct: 230 CIEYVRMLQWPK 241
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 78/176 (44%), Gaps = 32/176 (18%)
Query: 315 LEALKLFFAKREKEIG-NLSFDKDDQLAVEFVTAAANIRAASFGISLHSLFEAKGIAGNI 373
+E +++ +E+ G + D DD ++++ + RA+ + I + +G+ I
Sbjct: 231 IEYVRMLQWPKEQPFGEGVPLDGDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRI 290
Query: 374 VHAVATTNAIIAGLIVIEAIKV------------LLKDTDKYRMTYCLEHITKKMLLMPV 421
+ AVA+TNA+IA + E K+ + D D TY E
Sbjct: 291 IPAVASTNAVIAAVCATEVFKIATSAYIPLNNYLVFNDVDGL-YTYTFEA---------- 339
Query: 422 EPYEPNKSCYVCSETPLSLEINTSRSKLRDFVEKIV-KAKLGINFPLI---MHGSN 473
E ++C CS+ P +++ + S +KL++ ++ + A L + P I + G N
Sbjct: 340 ---ERKENCPACSQLPQNIQFSPS-AKLQEVLDYLTNSASLQMKSPAITATLEGKN 391
>pdb|3DBH|B Chain B, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|D Chain D, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|F Chain F, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|H Chain H, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
Length = 434
Score = 159 bits (402), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 83/192 (43%), Positives = 120/192 (62%), Gaps = 16/192 (8%)
Query: 14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARD 73
KVL++GAGG+GCELLK LALSGF+ IH+IDMDTI+VSNLNRQFLFR +G+ KA+VA +
Sbjct: 42 KVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAE 101
Query: 74 AVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCL-------- 125
+ P ++ H ++D FN F++QF++++ GLD++ ARR +N + +
Sbjct: 102 FLNDRVPNCNVVPHFNKIQD--FNDTFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDG 159
Query: 126 ----AADVPLVESGTTGFLGQVTVHVKGKTECYEC--QPKPAPKTYPVCTITSTPSKFVH 179
++ VPL++ GT GF G V + G T C EC + P +P+ TI S P H
Sbjct: 160 VLDPSSIVPLIDGGTEGFKGNAAVILPGMTACIECTLELYPPQVNFPMATIASMPRLPEH 219
Query: 180 CIVWAKDLLFAK 191
CI + + L + K
Sbjct: 220 CIEYVRMLQWPK 231
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 78/176 (44%), Gaps = 32/176 (18%)
Query: 315 LEALKLFFAKREKEIG-NLSFDKDDQLAVEFVTAAANIRAASFGISLHSLFEAKGIAGNI 373
+E +++ +E+ G + D DD ++++ + RA+ + I + +G+ I
Sbjct: 221 IEYVRMLQWPKEQPFGEGVPLDGDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRI 280
Query: 374 VHAVATTNAIIAGLIVIEAIKV------------LLKDTDKYRMTYCLEHITKKMLLMPV 421
+ AVA+TNA+IA + E K+ + D D TY E
Sbjct: 281 IPAVASTNAVIAAVCATEVFKIATSAYIPLNNYLVFNDVDGL-YTYTFEA---------- 329
Query: 422 EPYEPNKSCYVCSETPLSLEINTSRSKLRDFVEKIV-KAKLGINFPLI---MHGSN 473
E ++C CS+ P +++ + S +KL++ ++ + A L + P I + G N
Sbjct: 330 ---ERKENCPACSQLPQNIQFSPS-AKLQEVLDYLTNSASLQMKSPAITATLEGKN 381
>pdb|3DBR|B Chain B, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|D Chain D, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|F Chain F, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|H Chain H, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
Length = 434
Score = 159 bits (401), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 83/192 (43%), Positives = 120/192 (62%), Gaps = 16/192 (8%)
Query: 14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARD 73
KVL++GAGG+GCELLK LALSGF+ IH+IDMDTI+VSNLNRQFLFR +G+ KA+VA +
Sbjct: 42 KVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAE 101
Query: 74 AVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCL-------- 125
+ P ++ H ++D FN F++QF++++ GLD++ ARR +N + +
Sbjct: 102 FLNDRVPNCNVVPHFNKIQD--FNDTFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDG 159
Query: 126 ----AADVPLVESGTTGFLGQVTVHVKGKTECYEC--QPKPAPKTYPVCTITSTPSKFVH 179
++ VPL++ GT GF G V + G T C EC + P +P+ TI S P H
Sbjct: 160 VLDPSSIVPLIDGGTEGFKGNAQVILPGMTACIECTLELYPPQVNFPMATIASMPRLPEH 219
Query: 180 CIVWAKDLLFAK 191
CI + + L + K
Sbjct: 220 CIEYVRMLQWPK 231
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 78/176 (44%), Gaps = 32/176 (18%)
Query: 315 LEALKLFFAKREKEIG-NLSFDKDDQLAVEFVTAAANIRAASFGISLHSLFEAKGIAGNI 373
+E +++ +E+ G + D DD ++++ + RA+ + I + +G+ I
Sbjct: 221 IEYVRMLQWPKEQPFGEGVPLDGDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRI 280
Query: 374 VHAVATTNAIIAGLIVIEAIKV------------LLKDTDKYRMTYCLEHITKKMLLMPV 421
+ AVA+TNA+IA + E K+ + D D TY E
Sbjct: 281 IPAVASTNAVIAAVCATEVFKIATSAYIPLNNYLVFNDVDGL-YTYTFEA---------- 329
Query: 422 EPYEPNKSCYVCSETPLSLEINTSRSKLRDFVEKIV-KAKLGINFPLI---MHGSN 473
E ++C CS+ P +++ + S +KL++ ++ + A L + P I + G N
Sbjct: 330 ---ERKENCPACSQLPQNIQFSPS-AKLQEVLDYLTNSASLQMKSPAITATLEGKN 381
>pdb|3DBL|B Chain B, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|D Chain D, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|F Chain F, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|H Chain H, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
Length = 434
Score = 159 bits (401), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 83/192 (43%), Positives = 120/192 (62%), Gaps = 16/192 (8%)
Query: 14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARD 73
KVL++GAGG+GCELLK LALSGF+ IH+IDMDTI+VSNLNRQFLFR +G+ KA+VA +
Sbjct: 42 KVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAE 101
Query: 74 AVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCL-------- 125
+ P ++ H ++D FN F++QF++++ GLD++ ARR +N + +
Sbjct: 102 FLNDRVPNCNVVPHFNKIQD--FNDTFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDG 159
Query: 126 ----AADVPLVESGTTGFLGQVTVHVKGKTECYEC--QPKPAPKTYPVCTITSTPSKFVH 179
++ VPL++ GT GF G V + G T C EC + P +P+ TI S P H
Sbjct: 160 VLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMATIASMPRLPEH 219
Query: 180 CIVWAKDLLFAK 191
CI + + L + K
Sbjct: 220 CIEYVRMLQWPK 231
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 78/176 (44%), Gaps = 32/176 (18%)
Query: 315 LEALKLFFAKREKEIG-NLSFDKDDQLAVEFVTAAANIRAASFGISLHSLFEAKGIAGNI 373
+E +++ +E+ G + D DD ++++ + RA+ + I + +G+ I
Sbjct: 221 IEYVRMLQWPKEQPFGEGVPLDGDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRI 280
Query: 374 VHAVATTNAIIAGLIVIEAIKV------------LLKDTDKYRMTYCLEHITKKMLLMPV 421
+ AVA+TNA+IA + E K+ + D D TY E
Sbjct: 281 IPAVASTNAVIAAVCATEVFKIATSAYIPLNNYLVFNDVDGL-YTYTFEA---------- 329
Query: 422 EPYEPNKSCYVCSETPLSLEINTSRSKLRDFVEKIV-KAKLGINFPLI---MHGSN 473
E ++C CS+ P +++ + S +KL++ ++ + A L + P I + G N
Sbjct: 330 ---ERKENCPACSQLPQNIQFSPS-AKLQEVLDYLTNSASLQMKSPAITATLEGKN 381
>pdb|1R4M|B Chain B, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|D Chain D, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|F Chain F, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|H Chain H, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4N|B Chain B, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|D Chain D, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|F Chain F, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|H Chain H, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
Length = 431
Score = 158 bits (400), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 83/192 (43%), Positives = 120/192 (62%), Gaps = 16/192 (8%)
Query: 14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARD 73
KVL++GAGG+GCELLK LALSGF+ IH+IDMDTI+VSNLNRQFLFR +G+ KA+VA +
Sbjct: 39 KVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAE 98
Query: 74 AVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCL-------- 125
+ P ++ H ++D FN F++QF++++ GLD++ ARR +N + +
Sbjct: 99 FLNDRVPNCNVVPHFNKIQD--FNDTFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDG 156
Query: 126 ----AADVPLVESGTTGFLGQVTVHVKGKTECYEC--QPKPAPKTYPVCTITSTPSKFVH 179
++ VPL++ GT GF G V + G T C EC + P +P+ TI S P H
Sbjct: 157 VLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMATIASMPRLPEH 216
Query: 180 CIVWAKDLLFAK 191
CI + + L + K
Sbjct: 217 CIEYVRMLQWPK 228
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 78/176 (44%), Gaps = 32/176 (18%)
Query: 315 LEALKLFFAKREKEIG-NLSFDKDDQLAVEFVTAAANIRAASFGISLHSLFEAKGIAGNI 373
+E +++ +E+ G + D DD ++++ + RA+ + I + +G+ I
Sbjct: 218 IEYVRMLQWPKEQPFGEGVPLDGDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRI 277
Query: 374 VHAVATTNAIIAGLIVIEAIKV------------LLKDTDKYRMTYCLEHITKKMLLMPV 421
+ AVA+TNA+IA + E K+ + D D TY E
Sbjct: 278 IPAVASTNAVIAAVCATEVFKIATSAYIPLNNYLVFNDVDGL-YTYTFEA---------- 326
Query: 422 EPYEPNKSCYVCSETPLSLEINTSRSKLRDFVEKIV-KAKLGINFPLI---MHGSN 473
E ++C CS+ P +++ + S +KL++ ++ + A L + P I + G N
Sbjct: 327 ---ERKENCPACSQLPQNIQFSPS-AKLQEVLDYLTNSASLQMKSPAITATLEGKN 378
>pdb|3CMM|A Chain A, Crystal Structure Of The Uba1-Ubiquitin Complex
pdb|3CMM|C Chain C, Crystal Structure Of The Uba1-Ubiquitin Complex
Length = 1015
Score = 142 bits (359), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 84/196 (42%), Positives = 110/196 (56%), Gaps = 11/196 (5%)
Query: 10 IKGAKVLMVGAGGIGCELLKTLALSGFQD-----IHIIDMDTIEVSNLNRQFLFRQSHVG 64
I +KV +VG+G IGCE+LK AL G I + D D+IE SNLNRQFLFR VG
Sbjct: 423 IANSKVFLVGSGAIGCEMLKNWALLGLGSGSDGYIVVTDNDSIEKSNLNRQFLFRPKDVG 482
Query: 65 QSKAKVARDAVLKFRPQMS--ITAHHANV---KDPKFNVEFFKQFNVVLNGLDNLDARRH 119
++K++VA +AV P + I A V + FN F++ + V N LDN+DAR +
Sbjct: 483 KNKSEVAAEAVCAMNPDLKGKINAKIDKVGPETEEIFNDSFWESLDFVTNALDNVDARTY 542
Query: 120 VNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKFVH 179
V+R C+ PL+ESGT G G V + TE Y P K+ P+CT+ S P+K H
Sbjct: 543 VDRRCVFYRKPLLESGTLGTKGNTQVIIPRLTESYSSSRDPPEKSIPLCTLRSFPNKIDH 602
Query: 180 CIVWAKDLLFAKLFGD 195
I WAK LF F D
Sbjct: 603 TIAWAKS-LFQGYFTD 617
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 70/139 (50%), Gaps = 6/139 (4%)
Query: 10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAK 69
++ + VL++G G+G E+ K + L+G + + + D + +++++L+ QF + +GQ +
Sbjct: 25 MQTSNVLILGLKGLGVEIAKNVVLAGVKSMTVFDPEPVQLADLSTQFFLTEKDIGQKRGD 84
Query: 70 VARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVL-NGLDNLDARRHVNRLCLAAD 128
V R + + + + NV D +V QF VV+ +L+ + +N C ++
Sbjct: 85 VTRAKLAELNAYVPV-----NVLDSLDDVTQLSQFQVVVATDTVSLEDKVKINEFCHSSG 139
Query: 129 VPLVESGTTGFLGQVTVHV 147
+ + S T G G V +
Sbjct: 140 IRFISSETRGLFGNTFVDL 158
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 77/324 (23%), Positives = 131/324 (40%), Gaps = 35/324 (10%)
Query: 169 TITSTPSKFVHCIVWAKDLLFAKLFGDKNQENDLNVRXXXXXXXXXXEDVFVRRKDE--D 226
+++S P F CI WA+ L F K F ++ N +R +
Sbjct: 652 SLSSKPHNFEDCIKWAR-LEFEKKFNHDIKQLLFNFPKDAKTSNGEPFWSGAKRAPTPLE 710
Query: 227 IDQYGRRIYDHVFG------YNIEVASSNEETWKNRNRPKPIYSADVMPENLTEQNGNVA 280
D Y + V YN + S + + N + K + ++PE N N+
Sbjct: 711 FDIYNNDHFHFVVAGASLRAYNYGIKSDDSNSKPNVDEYKSVIDHMIIPE--FTPNANLK 768
Query: 281 KNCVVDTSSVSAMASLGLKNPQDTWTLLESSRIFLEALKLFFAKREKEIGNLSFDKDDQL 340
D +A A+ N D L SS L F ++ + F+KDD
Sbjct: 769 IQVNDDDPDPNANAA----NGSDEIDQLVSSLPDPSTLAGF------KLEPVDFEKDDDT 818
Query: 341 --AVEFVTAAANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLLK 398
+EF+TA +N RA ++ I + K IAG I+ A+ATT +++ GL+ +E K++
Sbjct: 819 NHHIEFITACSNCRAQNYFIETADRQKTKFIAGRIIPAIATTTSLVTGLVNLELYKLIDN 878
Query: 399 DTD--KYRMTYCLEHIT----KKMLLMPVEPYEPNKSCYVCSETPLSLEINTSRSKLRDF 452
TD +Y+ + + + + P Y K + + +I KL D
Sbjct: 879 KTDIEQYKNGFVNLALPFFGFSEPIASPKGEYNNKKYDKIWDRFDIKGDI-----KLSDL 933
Query: 453 VEKIVKAKLGINFPLIMHGSNLLY 476
+E K + G+ ++ +G +LLY
Sbjct: 934 IEHFEKDE-GLEITMLSYGVSLLY 956
>pdb|1JWB|B Chain B, Structure Of The Covalent Acyl-Adenylate Form Of The
Moeb-Moad Protein Complex
pdb|1JWA|B Chain B, Structure Of The Atp-Bound Moeb-Moad Protein Complex
pdb|1JW9|B Chain B, Structure Of The Native Moeb-Moad Protein Complex
Length = 249
Score = 105 bits (261), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 57/150 (38%), Positives = 86/150 (57%), Gaps = 2/150 (1%)
Query: 8 EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSK 67
EA+K ++VL+VG GG+GC + LA +G ++ ++D DT+ +SNL RQ L + VGQ K
Sbjct: 27 EALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPK 86
Query: 68 AKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAA 127
+ ARDA+ + P ++IT +A + D + + ++VL+ DN+ R +N C AA
Sbjct: 87 VESARDALTRINPHIAITPVNALLDDAEL-AALIAEHDLVLDCTDNVAVRNQLNAGCFAA 145
Query: 128 DVPLVESGTTGFLGQVTVHVKGKTE-CYEC 156
VPLV GQ+TV E CY C
Sbjct: 146 KVPLVSGAAIRMEGQITVFTYQDGEPCYRC 175
>pdb|2PX9|A Chain A, The Intrinsic Affinity Between E2 And The Cys Domain Of E1
In Ubiquitin-Like Modifications
Length = 217
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 115/229 (50%), Gaps = 33/229 (14%)
Query: 163 KTYPVCTITSTPSKFVHCIVWAKDLLFAKLFG--DKNQENDLNVRXXXXXXXXXXEDVFV 220
+T+P CTI +TPS+ +HCIVWAK LF +LFG D +QE + +
Sbjct: 3 RTFPGCTIRNTPSEPIHCIVWAK-YLFNQLFGEEDADQEVSPDRADPEAAWEPTEAEARA 61
Query: 221 RRKDEDID-------QYGR-------RIYDHVFGYNIEVASSNEETWKNRNRPKPIYSAD 266
R +ED D ++ + +++ +F +I + ++ W+ R P P+ A+
Sbjct: 62 RASNEDGDIKRISTKEWAKSTGYDPVKLFTKLFKDDIRYLLTMDKLWRKRKPPVPLDWAE 121
Query: 267 VMPENLTEQNGNVAKNCVVDTSSVSAMASLGLKNPQDTWTLLESSRIF---LEALKLFFA 323
V + E N + +N LGLK+ Q + +R+F +E L++ A
Sbjct: 122 VQSQG-EETNASDQQN----------EPQLGLKD-QQVLDVKSYARLFSKSIETLRVHLA 169
Query: 324 KREKEIGNLSFDKDDQLAVEFVTAAANIRAASFGISLHSLFEAKGIAGN 372
++ + L +DKDD A++FVT+AAN+R F +++ S F+ K +AGN
Sbjct: 170 EK-GDGAELIWDKDDPSAMDFVTSAANLRMHIFSMNMKSRFDIKSMAGN 217
>pdb|3H5A|A Chain A, Crystal Structure Of E. Coli Mccb
pdb|3H5A|B Chain B, Crystal Structure Of E. Coli Mccb
pdb|3H5A|C Chain C, Crystal Structure Of E. Coli Mccb
pdb|3H5A|D Chain D, Crystal Structure Of E. Coli Mccb
Length = 358
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 88/155 (56%), Gaps = 9/155 (5%)
Query: 8 EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSK 67
+ +K AKV+++G GGIG + LA SG +I +ID D IE +NL RQ LF + VG++K
Sbjct: 111 DKLKNAKVVILGCGGIGNHVSVILATSGIGEIILIDNDQIENTNLTRQVLFSEDDVGKNK 170
Query: 68 AKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDN-LDARRHVNRLCLA 126
+V + +LK ++S++ N+ D ++ + ++ + D+ + VN+ C+
Sbjct: 171 TEVIKRELLKRNSEISVSEIALNINDYT-DLHKVPEADIWVVSADHPFNLINWVNKYCVR 229
Query: 127 ADVPLVESGTTGFLGQVTV----HVKGKTECYECQ 157
A+ P + + G++ + V +V GKT CYECQ
Sbjct: 230 ANQPYINA---GYVNDIAVFGPLYVPGKTGCYECQ 261
>pdb|3H5N|A Chain A, Crystal Structure Of E. Coli Mccb + Atp
pdb|3H5N|B Chain B, Crystal Structure Of E. Coli Mccb + Atp
pdb|3H5N|C Chain C, Crystal Structure Of E. Coli Mccb + Atp
pdb|3H5N|D Chain D, Crystal Structure Of E. Coli Mccb + Atp
pdb|3H5R|A Chain A, Crystal Structure Of E. Coli Mccb + Succinimide
pdb|3H5R|B Chain B, Crystal Structure Of E. Coli Mccb + Succinimide
pdb|3H5R|C Chain C, Crystal Structure Of E. Coli Mccb + Succinimide
pdb|3H5R|D Chain D, Crystal Structure Of E. Coli Mccb + Succinimide
pdb|3H9G|A Chain A, Crystal Structure Of E. Coli Mccb + Mcca-N7isoasn
pdb|3H9G|B Chain B, Crystal Structure Of E. Coli Mccb + Mcca-N7isoasn
pdb|3H9G|C Chain C, Crystal Structure Of E. Coli Mccb + Mcca-N7isoasn
pdb|3H9G|D Chain D, Crystal Structure Of E. Coli Mccb + Mcca-N7isoasn
pdb|3H9J|A Chain A, Crystal Structure Of E. Coli Mccb + Ampcpp + Semet Mcca
pdb|3H9J|B Chain B, Crystal Structure Of E. Coli Mccb + Ampcpp + Semet Mcca
pdb|3H9J|C Chain C, Crystal Structure Of E. Coli Mccb + Ampcpp + Semet Mcca
pdb|3H9J|D Chain D, Crystal Structure Of E. Coli Mccb + Ampcpp + Semet Mcca
pdb|3H9Q|A Chain A, Crystal Structure Of E. Coli Mccb + Semet Mcca
pdb|3H9Q|B Chain B, Crystal Structure Of E. Coli Mccb + Semet Mcca
pdb|3H9Q|C Chain C, Crystal Structure Of E. Coli Mccb + Semet Mcca
pdb|3H9Q|D Chain D, Crystal Structure Of E. Coli Mccb + Semet Mcca
Length = 353
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 88/155 (56%), Gaps = 9/155 (5%)
Query: 8 EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSK 67
+ +K AKV+++G GGIG + LA SG +I +ID D IE +NL RQ LF + VG++K
Sbjct: 114 DKLKNAKVVILGCGGIGNHVSVILATSGIGEIILIDNDQIENTNLTRQVLFSEDDVGKNK 173
Query: 68 AKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDN-LDARRHVNRLCLA 126
+V + +LK ++S++ N+ D ++ + ++ + D+ + VN+ C+
Sbjct: 174 TEVIKRELLKRNSEISVSEIALNINDYT-DLHKVPEADIWVVSADHPFNLINWVNKYCVR 232
Query: 127 ADVPLVESGTTGFLGQVTV----HVKGKTECYECQ 157
A+ P + + G++ + V +V GKT CYECQ
Sbjct: 233 ANQPYINA---GYVNDIAVFGPLYVPGKTGCYECQ 264
>pdb|1ZFN|A Chain A, Structural Analysis Of Escherichia Coli Thif
pdb|1ZFN|B Chain B, Structural Analysis Of Escherichia Coli Thif
pdb|1ZFN|C Chain C, Structural Analysis Of Escherichia Coli Thif
pdb|1ZFN|D Chain D, Structural Analysis Of Escherichia Coli Thif
pdb|1ZKM|A Chain A, Structural Analysis Of Escherichia Coli Thif
pdb|1ZKM|B Chain B, Structural Analysis Of Escherichia Coli Thif
pdb|1ZKM|C Chain C, Structural Analysis Of Escherichia Coli Thif
pdb|1ZKM|D Chain D, Structural Analysis Of Escherichia Coli Thif
Length = 253
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 76/145 (52%), Gaps = 2/145 (1%)
Query: 13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVAR 72
++VL++G GG+G LA +G + + D D + +SNL RQ LF + + K++V++
Sbjct: 31 SQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQ 90
Query: 73 DAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLV 132
+ + P + +TA + + + +VVL+ DN+ R+ +N C+A + PL+
Sbjct: 91 QRLTQLNPDIQLTALQQRLTGEALK-DAVARADVVLDCTDNMATRQEINAACVALNTPLI 149
Query: 133 ESGTTGFLGQVTVHV-KGKTECYEC 156
+ GF GQ+ V + CY C
Sbjct: 150 TASAVGFGGQLMVLTPPWEQGCYRC 174
>pdb|1ZUD|1 Chain 1, Structure Of This-Thif Protein Complex
pdb|1ZUD|3 Chain 3, Structure Of This-Thif Protein Complex
Length = 251
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 76/145 (52%), Gaps = 2/145 (1%)
Query: 13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVAR 72
++VL++G GG+G LA +G + + D D + +SNL RQ LF + + K++V++
Sbjct: 29 SQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQ 88
Query: 73 DAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLV 132
+ + P + +TA + + + +VVL+ DN+ R+ +N C+A + PL+
Sbjct: 89 QRLTQLNPDIQLTALQQRLTGEALK-DAVARADVVLDCTDNMATRQEINAACVALNTPLI 147
Query: 133 ESGTTGFLGQVTVHV-KGKTECYEC 156
+ GF GQ+ V + CY C
Sbjct: 148 TASAVGFGGQLMVLTPPWEQGCYRC 172
>pdb|3GUC|A Chain A, Human Ubiquitin-Activating Enzyme 5 In Complex With Amppnp
pdb|3GUC|B Chain B, Human Ubiquitin-Activating Enzyme 5 In Complex With Amppnp
pdb|3H8V|A Chain A, Human Ubiquitin-Activating Enzyme 5 In Complex With Atp
pdb|3H8V|B Chain B, Human Ubiquitin-Activating Enzyme 5 In Complex With Atp
Length = 292
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 65/147 (44%), Gaps = 22/147 (14%)
Query: 29 KTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH 88
+ L G + + D D +E++N+NR F F+ G SK + A + P + H+
Sbjct: 53 EMLTRCGIGKLLLFDYDKVELANMNRLF-FQPHQAGLSKVQAAEHTLRNINPDVLFEVHN 111
Query: 89 ANVKDPKFNVEFFKQF---------------NVVLNGLDNLDARRHVNRLCLAADVPLVE 133
N+ VE F+ F ++VL+ +DN +AR +N C +E
Sbjct: 112 YNIT----TVENFQHFMDRISNGGLEEGKPVDLVLSCVDNFEARMTINTACNELGQTWME 167
Query: 134 SGTT--GFLGQVTVHVKGKTECYECQP 158
SG + G + + + G++ C+ C P
Sbjct: 168 SGVSENAVSGHIQLIIPGESACFACAP 194
>pdb|1Y8Q|A Chain A, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex
pdb|1Y8Q|C Chain C, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex
pdb|1Y8R|A Chain A, Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Complex
pdb|1Y8R|D Chain D, Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Complex
pdb|3KYC|A Chain A, Human Sumo E1 Complex With A Sumo1-Amp Mimic
pdb|3KYD|A Chain A, Human Sumo E1~sumo1-amp Tetrahedral Intermediate Mimic
Length = 346
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 65/133 (48%), Gaps = 4/133 (3%)
Query: 10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAK 69
++ ++VL+VG G+G E+ K L L+G + + ++D + + + QFL R VG+++A+
Sbjct: 34 LRASRVLLVGLKGLGAEIAKNLILAGVKGLTMLDHEQVTPEDPGAQFLIRTGSVGRNRAE 93
Query: 70 VARDAVLKFRPQMSITAHHANV-KDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAAD 128
+ + P + + ++ K P+ FF QF+ V + D V+++C
Sbjct: 94 ASLERAQNLNPMVDVKVDTEDIEKKPE---SFFTQFDAVCLTCCSRDVIVKVDQICHKNS 150
Query: 129 VPLVESGTTGFLG 141
+ G+ G
Sbjct: 151 IKFFTGDVFGYHG 163
>pdb|4GSK|A Chain A, Crystal Structure Of An Atg7-Atg10 Crosslinked Complex
pdb|4GSK|B Chain B, Crystal Structure Of An Atg7-Atg10 Crosslinked Complex
Length = 615
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 47/86 (54%)
Query: 1 MVSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQ 60
++ + L+ IK KVL++GAG +GC + + L G + I +D T+ SN RQ L+
Sbjct: 315 ILPDLNLDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNF 374
Query: 61 SHVGQSKAKVARDAVLKFRPQMSITA 86
G+ KA++A ++ + P M T
Sbjct: 375 EDAGKPKAELAAASLKRIFPLMDATG 400
>pdb|3VH1|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Atg7 (1-595)
Length = 598
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 47/86 (54%)
Query: 1 MVSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQ 60
++ + L+ IK KVL++GAG +GC + + L G + I +D T+ SN RQ L+
Sbjct: 316 ILPDLNLDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNF 375
Query: 61 SHVGQSKAKVARDAVLKFRPQMSITA 86
G+ KA++A ++ + P M T
Sbjct: 376 EDCGKPKAELAAASLKRIFPLMDATG 401
>pdb|3VH2|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Atg7 (1-613)
Length = 616
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 47/86 (54%)
Query: 1 MVSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQ 60
++ + L+ IK KVL++GAG +GC + + L G + I +D T+ SN RQ L+
Sbjct: 316 ILPDLNLDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNF 375
Query: 61 SHVGQSKAKVARDAVLKFRPQMSITA 86
G+ KA++A ++ + P M T
Sbjct: 376 EDCGKPKAELAAASLKRIFPLMDATG 401
>pdb|4GSL|A Chain A, Crystal Structure Of An Atg7-Atg3 Crosslinked Complex
pdb|4GSL|B Chain B, Crystal Structure Of An Atg7-Atg3 Crosslinked Complex
Length = 615
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 47/86 (54%)
Query: 1 MVSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQ 60
++ + L+ IK KVL++GAG +GC + + L G + I +D T+ SN RQ L+
Sbjct: 315 ILPDLNLDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNF 374
Query: 61 SHVGQSKAKVARDAVLKFRPQMSITA 86
G+ KA++A ++ + P M T
Sbjct: 375 EDCGKPKAELAAASLKRIFPLMDATG 400
>pdb|3T7E|A Chain A, Atg8 Transfer From Atg7 To Atg3: A Distinctive E1-E2
Architecture And Mechanism In The Autophagy Pathway
Length = 344
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 47/86 (54%)
Query: 1 MVSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQ 60
++ + L+ IK KVL++GAG +GC + + L G + I +D T+ SN RQ L+
Sbjct: 27 ILPDLNLDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNF 86
Query: 61 SHVGQSKAKVARDAVLKFRPQMSITA 86
G+ KA++A ++ + P M T
Sbjct: 87 EDCGKPKAELAAASLKRIFPLMDATG 112
>pdb|3VH3|A Chain A, Crystal Structure Of Atg7ctd-Atg8 Complex
pdb|3VH4|A Chain A, Crystal Structure Of Atg7ctd-Atg8-Mgatp Complex
Length = 340
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 47/86 (54%)
Query: 1 MVSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQ 60
++ + L+ IK KVL++GAG +GC + + L G + I +D T+ SN RQ L+
Sbjct: 23 ILPDLNLDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNF 82
Query: 61 SHVGQSKAKVARDAVLKFRPQMSITA 86
G+ KA++A ++ + P M T
Sbjct: 83 EDCGKPKAELAAASLKRIFPLMDATG 108
>pdb|3RUI|A Chain A, Crystal Structure Of Atg7c-Atg8 Complex
Length = 340
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 46/86 (53%)
Query: 1 MVSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQ 60
++ + L+ IK KVL++GAG +GC + + L G + I +D T+ SN RQ L+
Sbjct: 23 ILPDLNLDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNF 82
Query: 61 SHVGQSKAKVARDAVLKFRPQMSITA 86
G+ KA++A ++ + P T
Sbjct: 83 EDCGKPKAELAAASLKRIFPLXDATG 108
>pdb|3GZN|A Chain A, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8
And Mln4924
pdb|3GZN|C Chain C, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8
And Mln4924
Length = 534
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 69/146 (47%), Gaps = 9/146 (6%)
Query: 8 EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSK 67
EA++ A V ++ A G E+LK L L G IID + + + F ++S +G+++
Sbjct: 26 EALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNR 85
Query: 68 AKVARDAVLKFRPQMSITAHHANVKDPKFNV-----EFFKQFNVVLNGLDNLDARRHVNR 122
A +A ++F +++ + V++ N+ FF +F VV+ +
Sbjct: 86 A----EAAMEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTVVVATQLPESTSLRLAD 141
Query: 123 LCLAADVPLVESGTTGFLGQVTVHVK 148
+ + +PL+ T G +G + + +K
Sbjct: 142 VLWNSQIPLLICRTYGLVGYMRIIIK 167
>pdb|1R4M|A Chain A, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|C Chain C, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|E Chain E, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|G Chain G, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4N|A Chain A, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|C Chain C, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|E Chain E, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|G Chain G, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
Length = 529
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 69/146 (47%), Gaps = 9/146 (6%)
Query: 8 EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSK 67
EA++ A V ++ A G E+LK L L G IID + + + F ++S +G+++
Sbjct: 26 EALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNR 85
Query: 68 AKVARDAVLKFRPQMSITAHHANVKDPKFNV-----EFFKQFNVVLNGLDNLDARRHVNR 122
A +A ++F +++ + V++ N+ FF +F VV+ +
Sbjct: 86 A----EAAMEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTVVVATQLPESTSLRLAD 141
Query: 123 LCLAADVPLVESGTTGFLGQVTVHVK 148
+ + +PL+ T G +G + + +K
Sbjct: 142 VLWNSQIPLLICRTYGLVGYMRIIIK 167
>pdb|1TT5|A Chain A, Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2
Interaction Required For Optimal Conjugation Of The
Ubiquitin-Like Protein Nedd8
pdb|1TT5|C Chain C, Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2
Interaction Required For Optimal Conjugation Of The
Ubiquitin-Like Protein Nedd8
pdb|3DBH|A Chain A, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|C Chain C, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|E Chain E, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|G Chain G, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBL|A Chain A, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|C Chain C, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|E Chain E, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|G Chain G, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBR|A Chain A, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|C Chain C, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|E Chain E, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|G Chain G, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
Length = 531
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 69/146 (47%), Gaps = 9/146 (6%)
Query: 8 EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSK 67
EA++ A V ++ A G E+LK L L G IID + + + F ++S +G+++
Sbjct: 28 EALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNR 87
Query: 68 AKVARDAVLKFRPQMSITAHHANVKDPKFNV-----EFFKQFNVVLNGLDNLDARRHVNR 122
A +A ++F +++ + V++ N+ FF +F VV+ +
Sbjct: 88 A----EAAMEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTVVVATQLPESTSLRLAD 143
Query: 123 LCLAADVPLVESGTTGFLGQVTVHVK 148
+ + +PL+ T G +G + + +K
Sbjct: 144 VLWNSQIPLLICRTYGLVGYMRIIIK 169
>pdb|2NVU|A Chain A, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A
Trapped Ubiquitin-Like Protein Activation Complex
Length = 536
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 69/146 (47%), Gaps = 9/146 (6%)
Query: 8 EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSK 67
EA++ A V ++ A G E+LK L L G IID + + + F ++S +G+++
Sbjct: 28 EALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNR 87
Query: 68 AKVARDAVLKFRPQMSITAHHANVKDPKFNV-----EFFKQFNVVLNGLDNLDARRHVNR 122
A +A ++F +++ + V++ N+ FF +F VV+ +
Sbjct: 88 A----EAAMEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTVVVATQLPESTSLRLAD 143
Query: 123 LCLAADVPLVESGTTGFLGQVTVHVK 148
+ + +PL+ T G +G + + +K
Sbjct: 144 VLWNSQIPLLICRTYGLVGYMRIIIK 169
>pdb|1YOV|A Chain A, Insights Into The Ubiquitin Transfer Cascade From The
Refined Structure Of The Activating Enzyme For Nedd8
pdb|1YOV|C Chain C, Insights Into The Ubiquitin Transfer Cascade From The
Refined Structure Of The Activating Enzyme For Nedd8
Length = 537
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 69/146 (47%), Gaps = 9/146 (6%)
Query: 8 EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSK 67
EA++ A V ++ A G E+LK L L G IID + + + F ++S +G+++
Sbjct: 29 EALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNR 88
Query: 68 AKVARDAVLKFRPQMSITAHHANVKDPKFNV-----EFFKQFNVVLNGLDNLDARRHVNR 122
A +A ++F +++ + V++ N+ FF +F VV+ +
Sbjct: 89 A----EAAMEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTVVVATQLPESTSLRLAD 144
Query: 123 LCLAADVPLVESGTTGFLGQVTVHVK 148
+ + +PL+ T G +G + + +K
Sbjct: 145 VLWNSQIPLLICRTYGLVGYMRIIIK 170
>pdb|1Z7L|A Chain A, Crystal Structure Of Fragment Of Mouse
Ubiquitin-Activating Enzyme
pdb|1Z7L|B Chain B, Crystal Structure Of Fragment Of Mouse
Ubiquitin-Activating Enzyme
pdb|1Z7L|C Chain C, Crystal Structure Of Fragment Of Mouse
Ubiquitin-Activating Enzyme
Length = 276
Score = 35.4 bits (80), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 6/66 (9%)
Query: 315 LEALKLFFAKREKEIG----NLSFDKDD--QLAVEFVTAAANIRAASFGISLHSLFEAKG 368
LE LK +K G + F+KDD ++F+ AA+N+RA ++ IS ++K
Sbjct: 211 LEELKATLPSPDKLPGFKMYPIDFEKDDDSNFHMDFIVAASNLRAENYDISPADRHKSKL 270
Query: 369 IAGNIV 374
IAG I+
Sbjct: 271 IAGKII 276
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 163 KTYPVCTITSTPSKFVHCIVWAKDLLFAKLF 193
K+ P+CT+ + P+ H + WA+D F LF
Sbjct: 12 KSIPICTLKNFPNAIEHTLQWARD-EFEGLF 41
>pdb|3VPS|A Chain A, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
pdb|3VPS|B Chain B, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
Length = 321
Score = 32.7 bits (73), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 55/132 (41%), Gaps = 14/132 (10%)
Query: 6 QLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQ 65
Q +K ++ GAG IG L + L SG + + D+ + F + V +
Sbjct: 2 QRNTLKHRILITGGAGFIGGHLARALVASGEEVTVLDDLRVPPMIPPEGTGKFLEKPVLE 61
Query: 66 SKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCL 125
+ + D L + A H +V + F L+ LDN+D+ RH+ LC
Sbjct: 62 LEERDLSDVRLVYH-----LASHKSVP---------RSFKQPLDYLDNVDSGRHLLALCT 107
Query: 126 AADVPLVESGTT 137
+ VP V G+T
Sbjct: 108 SVGVPKVVVGST 119
>pdb|2BI7|A Chain A, Udp-Galactopyranose Mutase From Klebsiella Pneumoniae
Oxidised Fad
pdb|2BI8|A Chain A, Udp-Galactopyranose Mutase From Klebsiella Pneumoniae
With Reduced Fad
Length = 384
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIID 43
+K K+L+VGAG G + + LA G Q +HIID
Sbjct: 1 MKSKKILIVGAGFSGAVIGRQLAEKGHQ-VHIID 33
>pdb|1WAM|A Chain A, Structure Of Udp-Galactopyranose Mutase From Klebsiella
Pneumoniae With Fadh-
Length = 384
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIID 43
+K K+L+VGAG G + + LA G Q +HIID
Sbjct: 1 MKSKKILIVGAGFSGAVIGRQLAEKGHQ-VHIID 33
>pdb|3GF4|A Chain A, Structure Of Udp-Galactopyranose Mutase Bound To
Udp-Glucose
pdb|3GF4|B Chain B, Structure Of Udp-Galactopyranose Mutase Bound To
Udp-Glucose
pdb|3INR|A Chain A, Structure Of Udp-Galactopyranose Mutase Bound To Udp-
Galactose (Oxidized)
pdb|3INR|B Chain B, Structure Of Udp-Galactopyranose Mutase Bound To Udp-
Galactose (Oxidized)
pdb|3INT|A Chain A, Structure Of Udp-Galactopyranose Mutase Bound To Udp-
Galactose (Reduced)
pdb|3INT|B Chain B, Structure Of Udp-Galactopyranose Mutase Bound To Udp-
Galactose (Reduced)
pdb|3KYB|A Chain A, Structure Of Udp-Galactopyranose Mutase Bound To Flavin
Mononucleotide
pdb|3KYB|B Chain B, Structure Of Udp-Galactopyranose Mutase Bound To Flavin
Mononucleotide
Length = 390
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIID 43
+K K+L+VGAG G + + LA G Q +HIID
Sbjct: 1 MKSKKILIVGAGFSGAVIGRQLAEKGHQ-VHIID 33
>pdb|2CNM|A Chain A, Rimi - Ribosomal S18 N-Alpha-Protein Acetyltransferase In
Complex With A Bisubstrate Inhibitor (Cterm-Arg-Arg-Phe-
Tyr-Arg-Ala-N-Alpha-Acetyl-S-Coa).
pdb|2CNM|B Chain B, Rimi - Ribosomal S18 N-Alpha-Protein Acetyltransferase In
Complex With A Bisubstrate Inhibitor (Cterm-Arg-Arg-Phe-
Tyr-Arg-Ala-N-Alpha-Acetyl-S-Coa).
pdb|2CNM|C Chain C, Rimi - Ribosomal S18 N-Alpha-Protein Acetyltransferase In
Complex With A Bisubstrate Inhibitor (Cterm-Arg-Arg-Phe-
Tyr-Arg-Ala-N-Alpha-Acetyl-S-Coa).
pdb|2CNS|A Chain A, Rimi - Ribosomal S18 N-alpha-protein Acetyltransferase In
Complex With Acetylcoa.
pdb|2CNS|B Chain B, Rimi - Ribosomal S18 N-alpha-protein Acetyltransferase In
Complex With Acetylcoa.
pdb|2CNS|C Chain C, Rimi - Ribosomal S18 N-alpha-protein Acetyltransferase In
Complex With Acetylcoa.
pdb|2CNT|A Chain A, Rimi - Ribosomal S18 N-Alpha-Protein Acetyltransferase In
Complex With Coenzymea.
pdb|2CNT|B Chain B, Rimi - Ribosomal S18 N-Alpha-Protein Acetyltransferase In
Complex With Coenzymea.
pdb|2CNT|C Chain C, Rimi - Ribosomal S18 N-Alpha-Protein Acetyltransferase In
Complex With Coenzymea.
pdb|2CNT|D Chain D, Rimi - Ribosomal S18 N-Alpha-Protein Acetyltransferase In
Complex With Coenzymea
Length = 160
Score = 30.4 bits (67), Expect = 3.0, Method: Composition-based stats.
Identities = 16/66 (24%), Positives = 30/66 (45%)
Query: 305 WTLLESSRIFLEALKLFFAKREKEIGNLSFDKDDQLAVEFVTAAANIRAASFGISLHSLF 364
W + + + F + K FF + + NL DD++A +T A F I++ F
Sbjct: 16 WQIEQRAHAFPWSEKTFFGNQGERYLNLKLTADDRMAAFAITQVVLDEATLFNIAVDPDF 75
Query: 365 EAKGIA 370
+ +G+
Sbjct: 76 QRRGLG 81
>pdb|2PX2|A Chain A, Crystal Structure Of The Murray Valley Encephalitis Virus
Ns5 2'-O Methyltransferase Domain In Complex With Sah
(Monoclinic Form 1)
pdb|2PX2|B Chain B, Crystal Structure Of The Murray Valley Encephalitis Virus
Ns5 2'-O Methyltransferase Domain In Complex With Sah
(Monoclinic Form 1)
pdb|2PX4|A Chain A, Crystal Structure Of The Murray Valley Encephalitis Virus
Ns5 2'-O Methyltransferase Domain In Complex With Sah
(Monoclinic Form 2)
pdb|2PX5|A Chain A, Crystal Structure Of The Murray Valley Encephalitis Virus
Ns5 2'-O Methyltransferase Domain In Complex With Sah
(Orthorhombic Crystal Form)
pdb|2PX5|B Chain B, Crystal Structure Of The Murray Valley Encephalitis Virus
Ns5 2'-O Methyltransferase Domain In Complex With Sah
(Orthorhombic Crystal Form)
pdb|2PXA|A Chain A, Crystal Structure Of The Murray Valley Encephalitis Virus
Ns5 2'-o Methyltransferase Domain In Complex With Sah
And Gtpg
pdb|2PXA|B Chain B, Crystal Structure Of The Murray Valley Encephalitis Virus
Ns5 2'-o Methyltransferase Domain In Complex With Sah
And Gtpg
pdb|2PXC|A Chain A, Crystal Structure Of The Murray Valley Encephalitis Virus
Ns5 2'-o Methyltransferase Domain In Complex With Sam
And Gtpa
Length = 269
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 359 SLHSLFEAKGIAGNIVHAVATTNAIIAG 386
S H ++ G +GNIVHAV T+ ++ G
Sbjct: 215 SNHEMYWVSGASGNIVHAVNMTSQVLIG 242
>pdb|2PX8|A Chain A, Crystal Structure Of The Murray Valley Encephalitis Virus
Ns5 2'-O Methyltransferase Domain In Complex With Sah
And 7m-Gtp
pdb|2PX8|B Chain B, Crystal Structure Of The Murray Valley Encephalitis Virus
Ns5 2'-O Methyltransferase Domain In Complex With Sah
And 7m-Gtp
Length = 269
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 359 SLHSLFEAKGIAGNIVHAVATTNAIIAG 386
S H ++ G +GNIVHAV T+ ++ G
Sbjct: 215 SNHEMYWVSGASGNIVHAVNMTSQVLIG 242
>pdb|2V3A|A Chain A, Crystal Structure Of Rubredoxin Reductase From Pseudomonas
Aeruginosa.
pdb|2V3B|A Chain A, Crystal Structure Of The Electron Transfer Complex
Rubredoxin - Rubredoxin Reductase From Pseudomonas
Aeruginosa
Length = 384
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 5 RQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQ 37
RQ A K +VL++GAG IGCE L+ G+Q
Sbjct: 139 RQAAAGK-RRVLLLGAGLIGCEFANDLSSGGYQ 170
>pdb|3KA7|A Chain A, Crystal Structure Of An Oxidoreductase From Methanosarcina
Mazei. Northeast Structural Genomics Consortium Target
Id Mar208
Length = 425
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 122 RLCLAADVPLVESGTTG-FLGQVTVHVKGKTECYECQPKPAP 162
++CLAAD PLV G TG L T + G E + P+ AP
Sbjct: 283 KICLAADEPLV--GHTGVLLTPYTRRINGVNEVTQADPELAP 322
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,930,326
Number of Sequences: 62578
Number of extensions: 588868
Number of successful extensions: 1533
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1425
Number of HSP's gapped (non-prelim): 67
length of query: 563
length of database: 14,973,337
effective HSP length: 104
effective length of query: 459
effective length of database: 8,465,225
effective search space: 3885538275
effective search space used: 3885538275
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)