Query 008516
Match_columns 563
No_of_seqs 355 out of 2123
Neff 6.8
Searched_HMMs 46136
Date Thu Mar 28 13:08:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008516.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008516hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2013 SMT3/SUMO-activating c 100.0 5E-117 1E-121 914.0 30.0 488 1-515 1-510 (603)
2 TIGR01408 Ube1 ubiquitin-activ 100.0 3E-101 7E-106 891.8 38.5 514 2-527 409-1005(1008)
3 KOG2012 Ubiquitin activating e 100.0 1E-99 2E-104 823.6 22.7 510 2-525 420-1009(1013)
4 cd01490 Ube1_repeat2 Ubiquitin 100.0 1.3E-95 3E-100 776.5 39.8 401 14-481 1-427 (435)
5 cd01489 Uba2_SUMO Ubiquitin ac 100.0 6.1E-89 1.3E-93 701.3 30.3 311 14-433 1-312 (312)
6 KOG2015 NEDD8-activating compl 100.0 6.4E-70 1.4E-74 540.9 26.9 366 3-516 31-409 (422)
7 cd01484 E1-2_like Ubiquitin ac 100.0 2.8E-69 6E-74 536.4 26.0 233 14-393 1-234 (234)
8 cd01488 Uba3_RUB Ubiquitin act 100.0 2E-68 4.3E-73 543.9 24.2 281 14-434 1-291 (291)
9 PRK08223 hypothetical protein; 100.0 7.4E-36 1.6E-40 303.0 18.7 156 2-159 17-174 (287)
10 TIGR02356 adenyl_thiF thiazole 100.0 6.9E-36 1.5E-40 292.1 17.4 170 2-172 11-181 (202)
11 cd01491 Ube1_repeat1 Ubiquitin 100.0 8.4E-36 1.8E-40 304.0 16.7 178 2-185 9-186 (286)
12 cd00757 ThiF_MoeB_HesA_family 100.0 1.2E-34 2.5E-39 288.6 18.9 159 2-161 11-169 (228)
13 PRK05690 molybdopterin biosynt 100.0 6.9E-35 1.5E-39 293.0 17.1 160 2-162 22-182 (245)
14 PRK07411 hypothetical protein; 100.0 1.2E-34 2.5E-39 309.5 17.9 170 2-172 28-199 (390)
15 PRK05597 molybdopterin biosynt 100.0 3.3E-34 7.2E-39 302.6 17.5 191 2-194 18-212 (355)
16 TIGR02355 moeB molybdopterin s 100.0 7.1E-34 1.5E-38 284.7 18.2 157 2-159 14-171 (240)
17 PRK08328 hypothetical protein; 100.0 5.6E-34 1.2E-38 284.1 17.3 158 2-160 17-175 (231)
18 PRK07878 molybdopterin biosynt 100.0 2.1E-33 4.5E-38 300.3 18.9 169 2-171 32-206 (392)
19 cd01492 Aos1_SUMO Ubiquitin ac 100.0 5.7E-33 1.2E-37 270.4 16.7 144 2-147 11-154 (197)
20 PRK12475 thiamine/molybdopteri 100.0 1.2E-32 2.5E-37 288.7 17.7 158 2-160 14-173 (338)
21 cd01485 E1-1_like Ubiquitin ac 100.0 1.8E-32 3.9E-37 267.1 16.9 146 2-147 9-157 (198)
22 PRK05600 thiamine biosynthesis 100.0 1.6E-32 3.5E-37 290.7 17.8 169 2-171 31-204 (370)
23 PRK07688 thiamine/molybdopteri 100.0 2.4E-32 5.2E-37 286.4 17.3 160 2-162 14-175 (339)
24 COG0476 ThiF Dinucleotide-util 100.0 1.1E-31 2.4E-36 271.3 17.9 160 3-163 21-181 (254)
25 TIGR01381 E1_like_apg7 E1-like 100.0 4.4E-31 9.4E-36 289.6 20.3 191 1-194 327-561 (664)
26 cd01493 APPBP1_RUB Ubiquitin a 100.0 5.2E-30 1.1E-34 274.8 28.2 158 2-160 10-168 (425)
27 PRK08762 molybdopterin biosynt 100.0 3.7E-31 8E-36 281.9 18.1 169 2-171 125-299 (376)
28 TIGR03736 PRTRC_ThiF PRTRC sys 100.0 1.2E-30 2.6E-35 260.3 16.4 178 10-193 9-220 (244)
29 PF00899 ThiF: ThiF family; I 100.0 2.4E-30 5.3E-35 236.9 15.0 134 11-145 1-134 (135)
30 cd01486 Apg7 Apg7 is an E1-lik 100.0 8.6E-30 1.9E-34 258.8 18.7 177 14-193 1-221 (307)
31 cd00755 YgdL_like Family of ac 100.0 6.3E-30 1.4E-34 254.2 15.4 139 2-140 1-139 (231)
32 PRK14851 hypothetical protein; 100.0 7.1E-30 1.5E-34 287.4 17.4 157 2-160 33-191 (679)
33 PRK14852 hypothetical protein; 100.0 1.2E-29 2.5E-34 289.5 17.6 157 2-160 322-480 (989)
34 cd01483 E1_enzyme_family Super 100.0 3.7E-29 8E-34 231.2 15.5 133 14-147 1-133 (143)
35 KOG2017 Molybdopterin synthase 100.0 3E-30 6.5E-35 260.1 8.6 167 2-169 56-224 (427)
36 PRK08644 thiamine biosynthesis 100.0 4.4E-29 9.5E-34 245.7 16.7 153 2-156 18-173 (212)
37 TIGR01408 Ube1 ubiquitin-activ 100.0 5.2E-28 1.1E-32 281.9 16.7 149 2-155 14-164 (1008)
38 cd01487 E1_ThiF_like E1_ThiF_l 100.0 1.1E-27 2.5E-32 228.8 15.9 142 14-157 1-145 (174)
39 PRK15116 sulfur acceptor prote 100.0 8.4E-28 1.8E-32 243.2 15.4 137 2-138 20-156 (268)
40 PRK07877 hypothetical protein; 99.9 2.4E-27 5.2E-32 267.7 16.4 162 2-168 97-263 (722)
41 TIGR02354 thiF_fam2 thiamine b 99.9 5.3E-26 1.1E-30 221.9 17.0 153 2-158 11-169 (200)
42 COG1179 Dinucleotide-utilizing 99.9 2E-26 4.4E-31 224.4 11.9 137 2-138 20-156 (263)
43 TIGR03603 cyclo_dehy_ocin bact 99.9 6.4E-26 1.4E-30 235.7 12.9 139 4-158 68-208 (318)
44 PRK06153 hypothetical protein; 99.9 4.7E-25 1E-29 230.7 14.8 147 5-160 169-318 (393)
45 PF02134 UBACT: Repeat in ubiq 99.9 1.1E-24 2.4E-29 175.4 7.5 67 333-399 1-67 (67)
46 KOG2336 Molybdopterin biosynth 99.9 4.9E-23 1.1E-27 202.6 11.6 153 5-159 75-241 (422)
47 KOG2014 SMT3/SUMO-activating c 99.9 3E-22 6.4E-27 199.7 12.5 146 3-150 22-167 (331)
48 PTZ00245 ubiquitin activating 99.9 6.5E-22 1.4E-26 194.8 11.6 106 2-115 16-121 (287)
49 KOG2012 Ubiquitin activating e 99.9 7.9E-22 1.7E-26 216.6 9.3 179 2-186 27-205 (1013)
50 KOG2018 Predicted dinucleotide 99.8 9.7E-20 2.1E-24 182.0 10.4 136 2-137 64-199 (430)
51 KOG2016 NEDD8-activating compl 99.8 1.9E-19 4.1E-24 187.0 8.7 157 2-159 17-174 (523)
52 KOG2337 Ubiquitin activating E 99.7 6.4E-18 1.4E-22 178.3 11.8 191 2-194 330-566 (669)
53 PF10585 UBA_e1_thiolCys: Ubiq 99.5 2.7E-15 5.9E-20 110.9 1.8 45 149-194 1-45 (45)
54 TIGR03693 ocin_ThiF_like putat 99.5 4.8E-14 1E-18 154.5 11.4 136 4-157 121-261 (637)
55 PF14732 UAE_UbL: Ubiquitin/SU 99.3 2.4E-12 5.2E-17 109.1 4.0 77 439-524 1-77 (87)
56 PF09358 UBA_e1_C: Ubiquitin-a 99.1 1.5E-11 3.3E-16 111.2 2.0 90 403-503 1-92 (125)
57 PF08825 E2_bind: E2 binding d 98.4 3.8E-07 8.2E-12 76.7 4.1 69 440-516 1-71 (84)
58 TIGR03882 cyclo_dehyd_2 bacter 98.0 4.7E-06 1E-10 81.2 4.9 96 3-157 96-193 (193)
59 COG1748 LYS9 Saccharopine dehy 97.8 7.4E-05 1.6E-09 79.8 10.0 101 13-138 2-102 (389)
60 cd01490 Ube1_repeat2 Ubiquitin 97.7 4.2E-05 9E-10 83.0 6.0 32 329-360 245-276 (435)
61 COG4015 Predicted dinucleotide 97.7 0.0003 6.5E-09 65.6 9.7 117 12-134 18-140 (217)
62 PRK12549 shikimate 5-dehydroge 97.6 0.00021 4.5E-09 73.9 9.0 77 10-112 125-201 (284)
63 PF01488 Shikimate_DH: Shikima 97.6 0.00017 3.7E-09 66.1 7.4 80 7-114 7-86 (135)
64 PRK06718 precorrin-2 dehydroge 97.5 0.00093 2E-08 65.6 11.4 93 9-133 7-99 (202)
65 PF13241 NAD_binding_7: Putati 97.4 0.0005 1.1E-08 60.1 6.7 89 9-135 4-92 (103)
66 TIGR01470 cysG_Nterm siroheme 97.2 0.0043 9.3E-08 61.1 12.3 96 10-136 7-102 (205)
67 PF03435 Saccharop_dh: Sacchar 97.0 0.0019 4.1E-08 69.3 8.3 96 15-134 1-97 (386)
68 PRK06719 precorrin-2 dehydroge 97.0 0.0066 1.4E-07 57.2 11.0 85 9-127 10-94 (157)
69 PRK05562 precorrin-2 dehydroge 96.9 0.011 2.5E-07 58.8 11.6 96 10-136 23-118 (223)
70 PRK12548 shikimate 5-dehydroge 96.6 0.0081 1.7E-07 62.2 9.1 85 10-112 124-208 (289)
71 TIGR01809 Shik-DH-AROM shikima 96.5 0.0077 1.7E-07 62.2 8.0 77 10-112 123-199 (282)
72 PRK14027 quinate/shikimate deh 96.5 0.0093 2E-07 61.7 8.4 79 10-112 125-203 (283)
73 COG0373 HemA Glutamyl-tRNA red 96.4 0.0064 1.4E-07 65.7 6.9 77 8-115 174-250 (414)
74 PRK00258 aroE shikimate 5-dehy 96.3 0.015 3.3E-07 59.8 8.6 74 10-112 121-194 (278)
75 PRK13940 glutamyl-tRNA reducta 96.2 0.0089 1.9E-07 65.0 6.7 76 9-114 178-253 (414)
76 PRK04148 hypothetical protein; 96.2 0.057 1.2E-06 49.6 10.8 96 11-137 16-111 (134)
77 PRK07066 3-hydroxybutyryl-CoA 96.2 0.04 8.7E-07 58.0 11.0 165 13-194 8-176 (321)
78 PRK12749 quinate/shikimate deh 96.0 0.024 5.1E-07 58.8 8.4 84 10-112 122-205 (288)
79 COG0569 TrkA K+ transport syst 96.0 0.049 1.1E-06 54.4 10.3 99 13-137 1-101 (225)
80 cd01065 NAD_bind_Shikimate_DH 95.9 0.021 4.5E-07 52.7 6.6 35 10-44 17-51 (155)
81 COG0169 AroE Shikimate 5-dehyd 95.8 0.035 7.5E-07 57.4 8.6 75 11-112 125-199 (283)
82 PRK07819 3-hydroxybutyryl-CoA 95.8 0.04 8.6E-07 57.0 9.1 165 13-194 6-179 (286)
83 PRK08293 3-hydroxybutyryl-CoA 95.7 0.037 8.1E-07 57.0 8.5 32 13-45 4-35 (287)
84 PRK06130 3-hydroxybutyryl-CoA 95.6 0.13 2.9E-06 53.4 12.1 159 13-192 5-171 (311)
85 PRK14106 murD UDP-N-acetylmura 95.6 0.049 1.1E-06 59.6 9.1 95 10-133 3-97 (450)
86 cd01080 NAD_bind_m-THF_DH_Cycl 95.5 0.028 6E-07 53.7 6.1 35 9-44 41-76 (168)
87 cd05213 NAD_bind_Glutamyl_tRNA 95.5 0.056 1.2E-06 56.6 9.0 82 10-122 176-257 (311)
88 COG1648 CysG Siroheme synthase 95.4 0.054 1.2E-06 53.6 8.0 97 9-136 9-105 (210)
89 PF01118 Semialdhyde_dh: Semia 95.4 0.12 2.5E-06 46.3 9.4 96 14-136 1-98 (121)
90 PRK10637 cysG siroheme synthas 95.3 0.09 1.9E-06 58.1 10.2 95 9-134 9-103 (457)
91 KOG4169 15-hydroxyprostaglandi 95.3 0.048 1E-06 54.2 6.8 80 10-110 3-90 (261)
92 cd05291 HicDH_like L-2-hydroxy 95.2 0.073 1.6E-06 55.5 8.7 73 13-113 1-78 (306)
93 cd01078 NAD_bind_H4MPT_DH NADP 95.0 0.075 1.6E-06 51.4 7.5 83 9-114 25-108 (194)
94 PLN02819 lysine-ketoglutarate 95.0 0.098 2.1E-06 62.8 9.7 99 11-135 568-679 (1042)
95 cd05311 NAD_bind_2_malic_enz N 94.9 0.033 7.2E-07 55.6 4.9 37 9-45 22-60 (226)
96 PRK00066 ldh L-lactate dehydro 94.8 0.12 2.7E-06 54.2 8.9 75 12-112 6-82 (315)
97 COG1086 Predicted nucleoside-d 94.8 0.14 3E-06 57.1 9.4 88 4-110 242-332 (588)
98 PF00056 Ldh_1_N: lactate/mala 94.7 0.11 2.3E-06 48.1 7.3 75 13-113 1-79 (141)
99 PF02737 3HCDH_N: 3-hydroxyacy 94.7 0.036 7.8E-07 53.4 4.4 163 14-192 1-170 (180)
100 PF01113 DapB_N: Dihydrodipico 94.7 0.16 3.6E-06 45.7 8.4 98 14-139 2-101 (124)
101 PF00070 Pyr_redox: Pyridine n 94.6 0.063 1.4E-06 44.2 5.0 54 14-79 1-54 (80)
102 PLN02545 3-hydroxybutyryl-CoA 94.6 0.43 9.4E-06 49.3 12.2 164 13-191 5-174 (295)
103 PRK05808 3-hydroxybutyryl-CoA 94.5 0.32 7E-06 49.9 11.2 157 13-191 4-173 (282)
104 PTZ00082 L-lactate dehydrogena 94.5 0.17 3.6E-06 53.4 9.1 35 10-44 4-38 (321)
105 cd05290 LDH_3 A subgroup of L- 94.4 0.16 3.5E-06 53.1 8.7 71 14-112 1-77 (307)
106 PRK06035 3-hydroxyacyl-CoA deh 94.2 0.24 5.1E-06 51.2 9.4 33 13-46 4-36 (291)
107 PF02719 Polysacc_synt_2: Poly 94.2 0.08 1.7E-06 54.9 5.7 77 15-110 1-84 (293)
108 PLN00203 glutamyl-tRNA reducta 94.1 0.12 2.6E-06 57.8 7.4 78 10-115 264-341 (519)
109 PRK07063 short chain dehydroge 94.1 0.23 4.9E-06 49.7 8.8 64 9-92 4-68 (260)
110 PRK06197 short chain dehydroge 94.0 0.22 4.7E-06 51.4 8.7 36 8-44 12-48 (306)
111 TIGR00507 aroE shikimate 5-deh 93.9 0.22 4.8E-06 50.9 8.4 73 11-113 116-188 (270)
112 PRK11880 pyrroline-5-carboxyla 93.9 0.52 1.1E-05 47.8 11.0 79 13-124 3-83 (267)
113 PF03446 NAD_binding_2: NAD bi 93.8 0.13 2.8E-06 48.4 6.0 116 13-139 2-123 (163)
114 PLN03209 translocon at the inn 93.8 0.54 1.2E-05 53.1 11.7 82 10-111 78-167 (576)
115 PRK05854 short chain dehydroge 93.8 0.24 5.3E-06 51.5 8.5 63 9-91 11-74 (313)
116 PRK07531 bifunctional 3-hydrox 93.8 0.67 1.4E-05 51.8 12.4 164 13-192 5-172 (495)
117 PRK09242 tropinone reductase; 93.7 0.27 5.9E-06 49.0 8.4 65 9-93 6-71 (257)
118 PRK14192 bifunctional 5,10-met 93.6 0.14 3.1E-06 52.9 6.3 34 9-43 156-190 (283)
119 PRK07530 3-hydroxybutyryl-CoA 93.6 0.57 1.2E-05 48.3 10.9 33 12-45 4-36 (292)
120 PRK14619 NAD(P)H-dependent gly 93.6 0.33 7.2E-06 50.6 9.2 33 12-45 4-36 (308)
121 PRK09260 3-hydroxybutyryl-CoA 93.6 0.39 8.5E-06 49.5 9.6 33 13-46 2-34 (288)
122 PRK00048 dihydrodipicolinate r 93.6 0.58 1.3E-05 47.6 10.6 133 13-194 2-136 (257)
123 PLN02240 UDP-glucose 4-epimera 93.5 0.52 1.1E-05 49.3 10.6 33 10-43 3-36 (352)
124 TIGR03589 PseB UDP-N-acetylglu 93.5 0.69 1.5E-05 48.4 11.5 78 10-110 2-81 (324)
125 PF05237 MoeZ_MoeB: MoeZ/MoeB 93.5 0.11 2.4E-06 43.6 4.5 58 374-435 23-82 (84)
126 PRK05476 S-adenosyl-L-homocyst 93.5 0.29 6.3E-06 53.5 8.7 36 10-46 210-245 (425)
127 PRK09496 trkA potassium transp 93.4 0.49 1.1E-05 51.7 10.6 91 13-130 1-93 (453)
128 PF13460 NAD_binding_10: NADH( 93.4 0.51 1.1E-05 44.4 9.3 94 15-138 1-100 (183)
129 PF01210 NAD_Gly3P_dh_N: NAD-d 93.2 0.24 5.2E-06 46.4 6.7 97 14-133 1-101 (157)
130 PRK11908 NAD-dependent epimera 93.2 0.82 1.8E-05 48.0 11.5 103 13-141 2-123 (347)
131 PLN02427 UDP-apiose/xylose syn 93.2 0.43 9.3E-06 51.0 9.5 114 9-142 11-142 (386)
132 cd00401 AdoHcyase S-adenosyl-L 93.2 0.58 1.3E-05 51.0 10.4 36 10-46 200-235 (413)
133 PRK08251 short chain dehydroge 93.2 0.51 1.1E-05 46.6 9.3 62 12-93 2-64 (248)
134 cd05296 GH4_P_beta_glucosidase 93.1 0.38 8.3E-06 52.5 9.0 108 13-143 1-115 (419)
135 PRK07231 fabG 3-ketoacyl-(acyl 93.1 0.28 6.2E-06 48.3 7.4 35 10-45 3-38 (251)
136 cd05293 LDH_1 A subgroup of L- 93.1 0.36 7.8E-06 50.6 8.4 74 12-112 3-80 (312)
137 PLN02602 lactate dehydrogenase 93.0 0.32 7E-06 51.9 8.1 73 13-112 38-114 (350)
138 PF03807 F420_oxidored: NADP o 93.0 0.2 4.3E-06 42.4 5.3 89 14-134 1-93 (96)
139 PRK13403 ketol-acid reductoiso 93.0 0.5 1.1E-05 49.7 9.1 81 6-122 10-90 (335)
140 PRK08618 ornithine cyclodeamin 92.9 0.5 1.1E-05 49.7 9.3 77 11-114 126-203 (325)
141 PRK14982 acyl-ACP reductase; P 92.9 0.45 9.8E-06 50.5 8.8 36 9-44 152-189 (340)
142 TIGR02355 moeB molybdopterin s 92.9 0.13 2.7E-06 52.0 4.5 57 373-433 182-240 (240)
143 PRK12826 3-ketoacyl-(acyl-carr 92.8 0.45 9.7E-06 46.8 8.3 35 10-45 4-39 (251)
144 cd05191 NAD_bind_amino_acid_DH 92.8 0.19 4.1E-06 42.1 4.8 35 10-44 21-55 (86)
145 PRK06129 3-hydroxyacyl-CoA deh 92.7 1.1 2.4E-05 46.6 11.6 33 13-46 3-35 (308)
146 PRK07523 gluconate 5-dehydroge 92.7 0.49 1.1E-05 47.1 8.6 35 9-44 7-42 (255)
147 PRK07831 short chain dehydroge 92.7 0.48 1E-05 47.4 8.5 34 9-43 14-49 (262)
148 cd05312 NAD_bind_1_malic_enz N 92.7 0.8 1.7E-05 47.2 10.1 106 8-136 21-140 (279)
149 PRK01438 murD UDP-N-acetylmura 92.7 0.46 9.9E-06 52.6 9.0 35 10-45 14-48 (480)
150 PRK05875 short chain dehydroge 92.6 0.54 1.2E-05 47.4 8.9 35 9-44 4-39 (276)
151 TIGR02622 CDP_4_6_dhtase CDP-g 92.5 0.83 1.8E-05 48.1 10.4 35 10-45 2-37 (349)
152 cd05298 GH4_GlvA_pagL_like Gly 92.5 0.69 1.5E-05 50.8 9.9 107 13-143 1-114 (437)
153 PRK07062 short chain dehydroge 92.4 0.52 1.1E-05 47.2 8.4 64 10-93 6-70 (265)
154 PRK15469 ghrA bifunctional gly 92.4 0.96 2.1E-05 47.5 10.5 90 9-135 133-226 (312)
155 PRK12550 shikimate 5-dehydroge 92.4 0.33 7.1E-06 50.0 6.9 33 12-44 122-154 (272)
156 TIGR03466 HpnA hopanoid-associ 92.3 0.63 1.4E-05 47.8 9.0 32 13-45 1-33 (328)
157 PRK15181 Vi polysaccharide bio 92.1 0.77 1.7E-05 48.4 9.6 36 9-45 12-48 (348)
158 PRK06141 ornithine cyclodeamin 92.1 0.57 1.2E-05 49.1 8.4 77 9-113 122-199 (314)
159 PRK07502 cyclohexadienyl dehyd 92.1 0.57 1.2E-05 48.7 8.3 33 12-44 6-39 (307)
160 cd00300 LDH_like L-lactate deh 92.0 0.61 1.3E-05 48.6 8.4 72 15-113 1-76 (300)
161 COG1893 ApbA Ketopantoate redu 92.0 0.65 1.4E-05 48.6 8.6 84 13-123 1-87 (307)
162 PRK05867 short chain dehydroge 91.9 0.71 1.5E-05 46.0 8.6 33 10-43 7-40 (253)
163 PRK07634 pyrroline-5-carboxyla 91.9 1.4 3.1E-05 43.9 10.7 82 11-124 3-87 (245)
164 TIGR02992 ectoine_eutC ectoine 91.9 0.79 1.7E-05 48.3 9.2 75 12-113 129-204 (326)
165 PRK05866 short chain dehydroge 91.9 0.69 1.5E-05 47.6 8.7 36 8-44 36-72 (293)
166 PRK09186 flagellin modificatio 91.9 0.66 1.4E-05 46.0 8.2 33 10-43 2-35 (256)
167 PRK07340 ornithine cyclodeamin 91.8 0.58 1.2E-05 48.9 8.0 76 10-114 123-199 (304)
168 COG0240 GpsA Glycerol-3-phosph 91.8 0.87 1.9E-05 47.9 9.2 90 13-123 2-91 (329)
169 PRK08339 short chain dehydroge 91.7 0.76 1.7E-05 46.3 8.7 34 10-44 6-40 (263)
170 PRK06194 hypothetical protein; 91.6 0.76 1.6E-05 46.6 8.6 34 10-44 4-38 (287)
171 PRK09599 6-phosphogluconate de 91.6 0.45 9.7E-06 49.5 6.9 117 14-139 2-123 (301)
172 TIGR01181 dTDP_gluc_dehyt dTDP 91.6 1.5 3.2E-05 44.7 10.6 31 14-44 1-33 (317)
173 PRK09987 dTDP-4-dehydrorhamnos 91.5 0.66 1.4E-05 47.9 8.1 105 13-141 1-109 (299)
174 PRK07576 short chain dehydroge 91.5 0.59 1.3E-05 47.1 7.5 37 8-45 5-42 (264)
175 PRK07417 arogenate dehydrogena 91.4 1.4 2.9E-05 45.3 10.2 31 14-45 2-32 (279)
176 PRK08655 prephenate dehydrogen 91.4 0.71 1.5E-05 50.7 8.5 90 13-136 1-93 (437)
177 PRK08217 fabG 3-ketoacyl-(acyl 91.4 0.73 1.6E-05 45.4 8.0 34 10-44 3-37 (253)
178 TIGR01035 hemA glutamyl-tRNA r 91.3 0.25 5.4E-06 53.9 4.9 36 9-44 177-212 (417)
179 PRK11154 fadJ multifunctional 91.3 0.35 7.6E-06 56.4 6.3 160 13-191 310-480 (708)
180 TIGR00936 ahcY adenosylhomocys 91.2 0.83 1.8E-05 49.7 8.6 36 10-46 193-228 (406)
181 TIGR00872 gnd_rel 6-phosphoglu 91.1 0.42 9E-06 49.6 6.1 32 14-46 2-33 (298)
182 PF02254 TrkA_N: TrkA-N domain 91.1 1.4 3.1E-05 38.4 8.6 84 15-126 1-85 (116)
183 PRK11730 fadB multifunctional 91.1 0.43 9.3E-06 55.7 6.7 163 13-192 314-484 (715)
184 TIGR01915 npdG NADPH-dependent 91.0 3.1 6.7E-05 41.1 11.9 83 13-123 1-88 (219)
185 COG0300 DltE Short-chain dehyd 91.0 1.2 2.5E-05 45.8 9.0 64 10-94 4-68 (265)
186 PRK09496 trkA potassium transp 91.0 1.4 3.1E-05 48.0 10.4 94 11-130 230-324 (453)
187 PRK08291 ectoine utilization p 90.9 1.2 2.5E-05 47.1 9.3 75 12-113 132-207 (330)
188 PLN02206 UDP-glucuronate decar 90.9 1.5 3.2E-05 48.3 10.4 104 11-142 118-239 (442)
189 PTZ00325 malate dehydrogenase; 90.9 0.6 1.3E-05 49.2 7.0 35 10-44 6-42 (321)
190 PRK06223 malate dehydrogenase; 90.9 1 2.2E-05 46.7 8.8 32 13-44 3-34 (307)
191 PTZ00345 glycerol-3-phosphate 90.8 0.62 1.3E-05 50.0 7.2 96 11-124 10-114 (365)
192 PTZ00117 malate dehydrogenase; 90.8 0.32 6.9E-06 51.2 4.9 36 10-45 3-38 (319)
193 PF02826 2-Hacid_dh_C: D-isome 90.8 0.35 7.5E-06 46.3 4.8 36 9-45 33-68 (178)
194 CHL00194 ycf39 Ycf39; Provisio 90.8 1.3 2.8E-05 46.0 9.5 98 13-138 1-112 (317)
195 PLN02520 bifunctional 3-dehydr 90.8 0.45 9.7E-06 53.6 6.3 34 10-44 377-410 (529)
196 PRK05565 fabG 3-ketoacyl-(acyl 90.8 0.98 2.1E-05 44.3 8.2 32 10-42 3-35 (247)
197 cd05197 GH4_glycoside_hydrolas 90.7 1.4 2.9E-05 48.4 9.8 108 13-144 1-115 (425)
198 PLN02253 xanthoxin dehydrogena 90.7 0.83 1.8E-05 46.2 7.8 35 9-44 15-50 (280)
199 COG1063 Tdh Threonine dehydrog 90.7 1.4 3.1E-05 46.8 9.8 91 14-129 171-264 (350)
200 PRK00094 gpsA NAD(P)H-dependen 90.7 0.84 1.8E-05 47.4 8.0 33 13-46 2-34 (325)
201 PLN02968 Probable N-acetyl-gam 90.6 0.9 1.9E-05 49.1 8.2 99 11-137 37-136 (381)
202 PRK06940 short chain dehydroge 90.6 1 2.3E-05 45.7 8.4 31 12-44 2-32 (275)
203 PRK07478 short chain dehydroge 90.6 1.1 2.5E-05 44.4 8.5 34 10-44 4-38 (254)
204 TIGR02279 PaaC-3OHAcCoADH 3-hy 90.6 1 2.3E-05 50.4 8.9 162 12-191 5-175 (503)
205 PRK12384 sorbitol-6-phosphate 90.6 1.2 2.6E-05 44.3 8.7 33 12-45 2-35 (259)
206 PF00106 adh_short: short chai 90.5 0.97 2.1E-05 41.6 7.4 61 13-92 1-62 (167)
207 PRK07814 short chain dehydroge 90.4 1.2 2.6E-05 44.6 8.6 35 10-45 8-43 (263)
208 TIGR01832 kduD 2-deoxy-D-gluco 90.4 1 2.2E-05 44.4 8.0 33 10-43 3-36 (248)
209 KOG0069 Glyoxylate/hydroxypyru 90.4 0.77 1.7E-05 48.5 7.2 92 8-135 158-253 (336)
210 PRK06181 short chain dehydroge 90.4 1.4 3E-05 44.0 8.9 31 13-44 2-33 (263)
211 PRK12491 pyrroline-5-carboxyla 90.3 1.9 4.2E-05 44.2 10.1 80 12-124 2-84 (272)
212 PRK10675 UDP-galactose-4-epime 90.3 2.7 5.8E-05 43.7 11.3 30 13-43 1-31 (338)
213 PRK07453 protochlorophyllide o 90.2 1 2.3E-05 46.8 8.1 34 10-44 4-38 (322)
214 PRK06138 short chain dehydroge 90.0 1.2 2.5E-05 44.0 8.0 34 10-44 3-37 (252)
215 PRK12939 short chain dehydroge 90.0 1.5 3.2E-05 43.1 8.7 33 10-43 5-38 (250)
216 PLN02653 GDP-mannose 4,6-dehyd 90.0 1.5 3.2E-05 45.9 9.1 35 10-45 4-39 (340)
217 PRK08277 D-mannonate oxidoredu 89.9 1.5 3.3E-05 44.2 8.9 35 9-44 7-42 (278)
218 PLN00141 Tic62-NAD(P)-related 89.9 2.2 4.7E-05 42.6 9.9 39 3-42 8-47 (251)
219 cd01075 NAD_bind_Leu_Phe_Val_D 89.9 0.44 9.6E-06 46.7 4.7 36 9-45 25-60 (200)
220 PLN02695 GDP-D-mannose-3',5'-e 89.9 1.7 3.7E-05 46.4 9.6 33 11-44 20-53 (370)
221 PTZ00142 6-phosphogluconate de 89.9 0.69 1.5E-05 51.3 6.7 122 13-139 2-130 (470)
222 PRK10217 dTDP-glucose 4,6-dehy 89.8 2.3 5.1E-05 44.6 10.5 32 13-44 2-34 (355)
223 PLN02657 3,8-divinyl protochlo 89.8 1.9 4.2E-05 46.5 10.1 33 11-44 59-92 (390)
224 PRK01710 murD UDP-N-acetylmura 89.8 1.8 4E-05 47.7 10.0 40 5-45 7-46 (458)
225 PRK00676 hemA glutamyl-tRNA re 89.7 0.41 8.9E-06 50.7 4.6 35 9-43 171-205 (338)
226 COG1250 FadB 3-hydroxyacyl-CoA 89.7 0.99 2.1E-05 47.2 7.3 154 13-186 4-169 (307)
227 PRK06172 short chain dehydroge 89.7 1.2 2.7E-05 44.1 7.9 34 10-44 5-39 (253)
228 PLN02214 cinnamoyl-CoA reducta 89.7 3 6.5E-05 43.9 11.2 107 10-137 8-128 (342)
229 PRK12475 thiamine/molybdopteri 89.7 0.48 1E-05 50.3 5.1 59 375-435 185-245 (338)
230 PRK00045 hemA glutamyl-tRNA re 89.6 0.44 9.6E-06 52.1 5.0 35 10-44 180-214 (423)
231 PRK09880 L-idonate 5-dehydroge 89.6 1.9 4.1E-05 45.3 9.6 34 11-44 169-202 (343)
232 PRK07666 fabG 3-ketoacyl-(acyl 89.6 1.5 3.3E-05 43.0 8.4 35 10-45 5-40 (239)
233 PRK05708 2-dehydropantoate 2-r 89.6 0.43 9.3E-06 49.8 4.6 33 12-45 2-34 (305)
234 PRK13394 3-hydroxybutyrate deh 89.5 1.5 3.2E-05 43.6 8.3 34 10-44 5-39 (262)
235 PF03949 Malic_M: Malic enzyme 89.5 0.49 1.1E-05 48.1 4.8 107 8-136 21-141 (255)
236 PRK07024 short chain dehydroge 89.5 1.3 2.7E-05 44.3 7.8 33 12-45 2-35 (257)
237 TIGR02440 FadJ fatty oxidation 89.4 0.96 2.1E-05 52.7 7.8 162 13-194 305-477 (699)
238 PRK07680 late competence prote 89.3 1.4 3E-05 45.0 8.1 78 14-123 2-82 (273)
239 PRK12829 short chain dehydroge 89.3 0.96 2.1E-05 45.0 6.8 38 6-44 5-43 (264)
240 TIGR02853 spore_dpaA dipicolin 89.2 0.5 1.1E-05 49.0 4.8 35 9-44 148-182 (287)
241 PRK12429 3-hydroxybutyrate deh 89.2 1.5 3.4E-05 43.2 8.2 34 10-44 2-36 (258)
242 PRK14175 bifunctional 5,10-met 89.2 0.88 1.9E-05 47.1 6.5 77 9-137 155-232 (286)
243 PRK05876 short chain dehydroge 89.2 1.4 3.1E-05 44.7 8.1 35 10-45 4-39 (275)
244 PRK08125 bifunctional UDP-gluc 89.2 2.9 6.3E-05 48.4 11.5 38 8-45 311-349 (660)
245 PRK03562 glutathione-regulated 89.1 0.59 1.3E-05 53.7 5.7 88 12-127 400-488 (621)
246 PRK07326 short chain dehydroge 89.0 1.5 3.2E-05 42.9 7.8 34 10-44 4-38 (237)
247 PLN02572 UDP-sulfoquinovose sy 89.0 4 8.7E-05 44.8 11.9 35 9-44 44-79 (442)
248 PRK05872 short chain dehydroge 88.9 1.5 3.3E-05 45.0 8.1 34 10-44 7-41 (296)
249 PRK07679 pyrroline-5-carboxyla 88.9 2.4 5.1E-05 43.5 9.5 91 11-133 2-97 (279)
250 PLN02166 dTDP-glucose 4,6-dehy 88.9 2.6 5.7E-05 46.3 10.3 104 11-142 119-240 (436)
251 PLN02350 phosphogluconate dehy 88.8 2.7 6E-05 46.9 10.5 122 13-139 7-136 (493)
252 PLN02650 dihydroflavonol-4-red 88.8 4.5 9.7E-05 42.5 11.8 33 11-44 4-37 (351)
253 TIGR00873 gnd 6-phosphoglucona 88.8 1 2.2E-05 50.0 7.1 119 14-139 1-127 (467)
254 TIGR03376 glycerol3P_DH glycer 88.7 1.9 4.1E-05 45.9 8.8 89 14-124 1-103 (342)
255 PRK13304 L-aspartate dehydroge 88.7 3.2 7E-05 42.4 10.3 88 13-134 2-91 (265)
256 cd01339 LDH-like_MDH L-lactate 88.7 1.7 3.7E-05 45.1 8.4 31 15-45 1-31 (300)
257 PLN02662 cinnamyl-alcohol dehy 88.7 4.7 0.0001 41.5 11.7 79 12-111 4-84 (322)
258 cd05211 NAD_bind_Glu_Leu_Phe_V 88.6 0.59 1.3E-05 46.5 4.6 38 9-46 20-57 (217)
259 TIGR01850 argC N-acetyl-gamma- 88.6 1.9 4.2E-05 45.8 8.8 98 13-136 1-100 (346)
260 PRK12367 short chain dehydroge 88.5 0.9 2E-05 45.7 6.0 42 3-45 5-47 (245)
261 PRK11559 garR tartronate semia 88.4 2.3 5E-05 43.8 9.1 32 13-45 3-34 (296)
262 TIGR01472 gmd GDP-mannose 4,6- 88.4 2.9 6.2E-05 43.8 9.9 32 13-45 1-33 (343)
263 PRK08762 molybdopterin biosynt 88.4 0.58 1.3E-05 50.3 4.7 57 375-435 300-358 (376)
264 PRK07035 short chain dehydroge 88.3 2.6 5.6E-05 41.7 9.1 36 9-45 5-41 (252)
265 PRK12744 short chain dehydroge 88.2 2.1 4.7E-05 42.6 8.5 32 10-41 6-38 (257)
266 PRK03659 glutathione-regulated 88.2 1.7 3.7E-05 49.8 8.6 89 12-128 400-489 (601)
267 PRK06522 2-dehydropantoate 2-r 88.2 0.66 1.4E-05 47.7 4.8 32 13-45 1-32 (304)
268 KOG0024 Sorbitol dehydrogenase 88.1 2 4.3E-05 45.1 8.1 35 11-45 169-203 (354)
269 PRK08040 putative semialdehyde 88.1 2.2 4.7E-05 45.3 8.7 92 11-135 3-97 (336)
270 PRK12490 6-phosphogluconate de 88.1 1.2 2.6E-05 46.2 6.8 31 14-45 2-32 (299)
271 PF02629 CoA_binding: CoA bind 88.1 2 4.4E-05 36.7 7.0 92 11-136 2-94 (96)
272 TIGR01759 MalateDH-SF1 malate 88.1 1.2 2.7E-05 46.9 6.9 31 13-43 4-41 (323)
273 cd01337 MDH_glyoxysomal_mitoch 88.1 1.2 2.6E-05 46.8 6.6 33 13-45 1-35 (310)
274 PRK06949 short chain dehydroge 88.0 2.3 4.9E-05 42.2 8.5 34 10-44 7-41 (258)
275 TIGR01202 bchC 2-desacetyl-2-h 88.0 1.9 4.2E-05 44.6 8.3 34 11-44 144-177 (308)
276 PRK06196 oxidoreductase; Provi 88.0 1.7 3.8E-05 45.0 7.9 36 9-45 23-59 (315)
277 TIGR02437 FadB fatty oxidation 88.0 1.4 2.9E-05 51.6 7.7 162 13-191 314-483 (714)
278 PRK13302 putative L-aspartate 87.9 2.3 4.9E-05 43.7 8.5 91 10-133 4-96 (271)
279 KOG1205 Predicted dehydrogenas 87.9 2.5 5.4E-05 43.7 8.7 86 5-110 5-98 (282)
280 cd00762 NAD_bind_malic_enz NAD 87.9 0.49 1.1E-05 48.1 3.5 107 8-136 21-141 (254)
281 COG1052 LdhA Lactate dehydroge 87.9 1.9 4.1E-05 45.6 8.0 89 9-135 143-236 (324)
282 PRK12439 NAD(P)H-dependent gly 87.8 2.7 5.9E-05 44.5 9.4 91 13-124 8-98 (341)
283 PRK11199 tyrA bifunctional cho 87.8 1.7 3.6E-05 46.8 7.8 32 13-45 99-131 (374)
284 PLN02896 cinnamyl-alcohol dehy 87.8 5 0.00011 42.2 11.4 32 11-43 9-41 (353)
285 TIGR01316 gltA glutamate synth 87.7 3.5 7.7E-05 45.3 10.5 34 11-45 132-165 (449)
286 PRK07792 fabG 3-ketoacyl-(acyl 87.7 2.4 5.3E-05 43.8 8.8 36 8-44 8-44 (306)
287 PRK06545 prephenate dehydrogen 87.6 3.1 6.7E-05 44.4 9.7 93 13-136 1-96 (359)
288 PRK08265 short chain dehydroge 87.5 1.8 3.9E-05 43.4 7.5 35 10-45 4-39 (261)
289 PLN02989 cinnamyl-alcohol dehy 87.5 2.8 6.2E-05 43.3 9.2 80 12-111 5-85 (325)
290 PRK06125 short chain dehydroge 87.4 2.6 5.6E-05 42.0 8.5 34 10-44 5-39 (259)
291 PRK06928 pyrroline-5-carboxyla 87.4 3 6.6E-05 42.8 9.2 81 13-124 2-85 (277)
292 PRK08213 gluconate 5-dehydroge 87.4 2.7 5.9E-05 41.8 8.6 37 7-44 7-44 (259)
293 PRK05855 short chain dehydroge 87.3 1.4 3.1E-05 49.0 7.3 36 8-44 311-347 (582)
294 PRK07074 short chain dehydroge 87.3 2.4 5.1E-05 42.1 8.2 33 12-45 2-35 (257)
295 PRK07774 short chain dehydroge 87.3 2.8 6.1E-05 41.3 8.7 34 10-44 4-38 (250)
296 PRK05335 tRNA (uracil-5-)-meth 87.3 0.76 1.7E-05 50.3 4.8 34 12-46 2-35 (436)
297 PRK12769 putative oxidoreducta 87.3 3.1 6.6E-05 48.1 10.1 34 11-45 326-359 (654)
298 PRK06124 gluconate 5-dehydroge 87.3 2.2 4.7E-05 42.4 7.9 36 9-45 8-44 (256)
299 TIGR01505 tartro_sem_red 2-hyd 87.3 2.6 5.7E-05 43.3 8.7 31 14-45 1-31 (291)
300 PRK12827 short chain dehydroge 87.3 3.1 6.8E-05 40.7 8.9 33 10-43 4-37 (249)
301 PRK07102 short chain dehydroge 87.2 3 6.6E-05 41.0 8.8 32 13-45 2-34 (243)
302 PRK06249 2-dehydropantoate 2-r 87.2 0.79 1.7E-05 47.8 4.8 34 12-46 5-38 (313)
303 PRK07109 short chain dehydroge 87.2 2.4 5.2E-05 44.6 8.5 35 9-44 5-40 (334)
304 PLN02780 ketoreductase/ oxidor 87.2 3.5 7.6E-05 43.2 9.6 62 11-92 52-114 (320)
305 cd00650 LDH_MDH_like NAD-depen 87.2 1.3 2.9E-05 45.0 6.3 32 15-46 1-36 (263)
306 PRK06139 short chain dehydroge 87.2 2 4.3E-05 45.3 7.8 35 9-44 4-39 (330)
307 PTZ00431 pyrroline carboxylate 87.1 3.1 6.8E-05 42.2 9.0 74 11-124 2-78 (260)
308 PRK06113 7-alpha-hydroxysteroi 87.1 1.9 4.2E-05 42.9 7.4 34 9-43 8-42 (255)
309 PRK13301 putative L-aspartate 87.1 1.6 3.5E-05 44.7 6.7 115 12-137 2-124 (267)
310 PRK09072 short chain dehydroge 87.1 2.2 4.9E-05 42.6 7.9 35 10-45 3-38 (263)
311 PRK07806 short chain dehydroge 87.0 2.5 5.4E-05 41.7 8.1 33 10-43 4-37 (248)
312 TIGR01214 rmlD dTDP-4-dehydror 87.0 2.5 5.4E-05 42.7 8.3 30 14-44 1-31 (287)
313 PRK06476 pyrroline-5-carboxyla 87.0 1.9 4.1E-05 43.6 7.3 88 14-133 2-91 (258)
314 PRK13018 cell division protein 86.9 3.5 7.7E-05 44.4 9.6 38 10-47 26-65 (378)
315 PF01408 GFO_IDH_MocA: Oxidore 86.9 1.2 2.6E-05 39.0 5.2 85 14-132 2-90 (120)
316 PRK08643 acetoin reductase; Va 86.9 3.5 7.5E-05 40.9 9.1 32 12-44 2-34 (256)
317 PRK07688 thiamine/molybdopteri 86.9 0.96 2.1E-05 48.0 5.2 58 375-435 185-245 (339)
318 PF02056 Glyco_hydro_4: Family 86.9 0.88 1.9E-05 44.1 4.5 106 14-141 1-113 (183)
319 TIGR02441 fa_ox_alpha_mit fatt 86.9 0.96 2.1E-05 53.0 5.7 163 13-191 336-505 (737)
320 TIGR03206 benzo_BadH 2-hydroxy 86.8 2.9 6.2E-05 41.1 8.4 34 10-44 1-35 (250)
321 PRK06523 short chain dehydroge 86.8 2 4.3E-05 42.8 7.3 55 9-66 6-61 (260)
322 PRK08589 short chain dehydroge 86.7 2.3 5E-05 42.9 7.8 34 9-43 3-37 (272)
323 PRK15461 NADH-dependent gamma- 86.7 3 6.4E-05 43.3 8.7 32 13-45 2-33 (296)
324 PRK00436 argC N-acetyl-gamma-g 86.6 4.5 9.7E-05 43.0 10.1 95 13-135 3-99 (343)
325 PRK05653 fabG 3-ketoacyl-(acyl 86.6 2.6 5.7E-05 41.0 7.9 35 10-45 3-38 (246)
326 PRK06114 short chain dehydroge 86.5 2.7 5.9E-05 41.8 8.1 35 9-44 5-40 (254)
327 PRK06198 short chain dehydroge 86.5 3 6.5E-05 41.4 8.4 37 9-45 3-40 (260)
328 PRK08063 enoyl-(acyl carrier p 86.3 2.7 5.8E-05 41.5 7.8 28 10-37 2-30 (250)
329 PRK10538 malonic semialdehyde 86.3 2.9 6.2E-05 41.5 8.1 32 13-45 1-33 (248)
330 cd08230 glucose_DH Glucose deh 86.3 3.7 8.1E-05 43.2 9.3 33 11-44 172-204 (355)
331 PRK08324 short chain dehydroge 86.3 4.4 9.6E-05 47.1 10.7 34 11-45 421-455 (681)
332 PLN02688 pyrroline-5-carboxyla 86.2 3.2 7E-05 41.9 8.5 78 13-123 1-81 (266)
333 PRK08306 dipicolinate synthase 86.2 1 2.2E-05 46.9 4.9 35 10-45 150-184 (296)
334 PF10727 Rossmann-like: Rossma 86.2 1.2 2.6E-05 40.6 4.7 83 10-125 8-90 (127)
335 PRK04308 murD UDP-N-acetylmura 86.1 3.5 7.6E-05 45.1 9.4 35 10-45 3-37 (445)
336 PRK08226 short chain dehydroge 86.1 2.7 5.9E-05 41.9 7.8 35 9-44 3-38 (263)
337 PRK10084 dTDP-glucose 4,6 dehy 86.1 4.6 0.0001 42.3 9.9 30 14-43 2-32 (352)
338 PRK07677 short chain dehydroge 86.1 2.9 6.3E-05 41.5 8.0 33 12-45 1-34 (252)
339 TIGR01296 asd_B aspartate-semi 86.0 2.5 5.4E-05 44.9 7.8 91 14-135 1-92 (339)
340 PRK10669 putative cation:proto 86.0 2.4 5.2E-05 48.0 8.2 77 12-116 417-494 (558)
341 PRK07097 gluconate 5-dehydroge 86.0 2.7 5.8E-05 42.1 7.7 34 9-43 7-41 (265)
342 PRK07856 short chain dehydroge 85.9 1.6 3.6E-05 43.3 6.1 36 10-46 4-40 (252)
343 PLN00198 anthocyanidin reducta 85.7 9.1 0.0002 39.9 11.9 35 10-45 7-42 (338)
344 PRK08085 gluconate 5-dehydroge 85.7 3.6 7.9E-05 40.8 8.5 34 9-43 6-40 (254)
345 PRK05786 fabG 3-ketoacyl-(acyl 85.7 2.9 6.3E-05 40.9 7.7 34 10-44 3-37 (238)
346 TIGR01373 soxB sarcosine oxida 85.6 1.3 2.9E-05 47.5 5.7 39 12-50 30-69 (407)
347 PRK05671 aspartate-semialdehyd 85.6 3.9 8.5E-05 43.4 9.0 92 13-135 5-97 (336)
348 PF02558 ApbA: Ketopantoate re 85.6 1.3 2.9E-05 40.5 4.9 28 15-43 1-28 (151)
349 TIGR01318 gltD_gamma_fam gluta 85.6 4.7 0.0001 44.6 10.1 34 11-45 140-173 (467)
350 PRK05717 oxidoreductase; Valid 85.5 2.6 5.6E-05 42.0 7.3 35 10-45 8-43 (255)
351 PRK09330 cell division protein 85.5 3.4 7.4E-05 44.6 8.6 39 8-46 9-49 (384)
352 PRK11150 rfaD ADP-L-glycero-D- 85.4 4.2 9E-05 41.7 9.0 31 15-45 2-33 (308)
353 COG0039 Mdh Malate/lactate deh 85.3 1 2.2E-05 47.2 4.4 32 13-44 1-33 (313)
354 PRK13243 glyoxylate reductase; 85.3 1.1 2.3E-05 47.5 4.6 92 9-137 147-242 (333)
355 TIGR00065 ftsZ cell division p 85.2 3.7 8.1E-05 43.8 8.6 41 8-48 13-55 (349)
356 PRK06567 putative bifunctional 85.2 2.4 5.3E-05 50.8 7.9 40 11-51 382-421 (1028)
357 PF04321 RmlD_sub_bind: RmlD s 85.2 2.3 4.9E-05 43.9 6.9 101 13-139 1-104 (286)
358 PRK08664 aspartate-semialdehyd 85.2 2.8 6.1E-05 44.6 7.8 100 12-135 3-107 (349)
359 PRK00141 murD UDP-N-acetylmura 85.2 0.99 2.1E-05 50.0 4.5 41 3-44 6-46 (473)
360 PRK07890 short chain dehydroge 85.2 3.3 7.1E-05 41.0 7.9 34 10-44 3-37 (258)
361 PLN02503 fatty acyl-CoA reduct 85.1 6.8 0.00015 44.9 11.2 132 5-143 112-275 (605)
362 PRK08278 short chain dehydroge 85.0 4 8.7E-05 41.3 8.6 35 10-45 4-39 (273)
363 cd05292 LDH_2 A subgroup of L- 85.0 1.3 2.8E-05 46.3 5.0 32 13-44 1-33 (308)
364 PRK08340 glucose-1-dehydrogena 84.9 3.6 7.8E-05 41.0 8.1 31 13-44 1-32 (259)
365 PRK08220 2,3-dihydroxybenzoate 84.8 2.4 5.1E-05 41.9 6.7 36 10-46 6-42 (252)
366 TIGR00036 dapB dihydrodipicoli 84.8 4.7 0.0001 41.2 8.9 97 13-139 2-102 (266)
367 TIGR02632 RhaD_aldol-ADH rhamn 84.8 3.5 7.5E-05 47.9 8.9 33 11-44 413-446 (676)
368 PLN02852 ferredoxin-NADP+ redu 84.8 4.8 0.0001 45.0 9.6 42 11-54 25-68 (491)
369 PRK08818 prephenate dehydrogen 84.8 3.7 8.1E-05 44.2 8.5 35 10-44 2-37 (370)
370 PRK12480 D-lactate dehydrogena 84.7 1.3 2.8E-05 46.9 4.9 88 9-135 143-234 (330)
371 PRK15076 alpha-galactosidase; 84.7 3 6.5E-05 45.8 7.9 108 13-143 2-118 (431)
372 PRK11259 solA N-methyltryptoph 84.7 1.1 2.5E-05 47.2 4.5 35 12-47 3-37 (376)
373 PRK06914 short chain dehydroge 84.6 3.6 7.8E-05 41.5 8.0 34 11-45 2-36 (280)
374 PRK05479 ketol-acid reductoiso 84.6 1.3 2.9E-05 46.8 4.9 36 7-43 12-47 (330)
375 TIGR00518 alaDH alanine dehydr 84.6 1.2 2.7E-05 47.7 4.8 35 10-45 165-199 (370)
376 PLN02383 aspartate semialdehyd 84.6 5 0.00011 42.7 9.3 92 11-135 6-100 (344)
377 PRK04207 glyceraldehyde-3-phos 84.6 4.3 9.2E-05 43.2 8.8 39 98-137 73-111 (341)
378 TIGR01179 galE UDP-glucose-4-e 84.6 6.8 0.00015 39.9 10.1 29 14-43 1-30 (328)
379 TIGR01771 L-LDH-NAD L-lactate 84.5 2.7 5.9E-05 43.8 7.1 68 17-112 1-73 (299)
380 cd05294 LDH-like_MDH_nadp A la 84.5 3.4 7.3E-05 43.3 7.8 33 13-45 1-35 (309)
381 PRK06128 oxidoreductase; Provi 84.3 4.2 9.2E-05 41.8 8.5 34 9-43 52-86 (300)
382 COG1087 GalE UDP-glucose 4-epi 84.3 8.6 0.00019 40.2 10.4 114 13-142 1-124 (329)
383 PRK02472 murD UDP-N-acetylmura 84.3 2.8 6.2E-05 45.7 7.6 35 10-45 3-37 (447)
384 PRK07067 sorbitol dehydrogenas 84.2 2.2 4.9E-05 42.4 6.2 36 10-46 4-40 (257)
385 PRK12771 putative glutamate sy 84.0 3.6 7.9E-05 46.6 8.4 34 11-45 136-169 (564)
386 PRK08374 homoserine dehydrogen 83.9 6.4 0.00014 41.8 9.7 109 12-136 2-123 (336)
387 PLN02928 oxidoreductase family 83.9 1.2 2.7E-05 47.3 4.4 35 9-44 156-190 (347)
388 PRK06935 2-deoxy-D-gluconate 3 83.9 3.9 8.4E-05 40.7 7.8 35 9-44 12-47 (258)
389 cd02201 FtsZ_type1 FtsZ is a G 83.9 5.9 0.00013 41.3 9.4 39 13-51 1-41 (304)
390 PRK07454 short chain dehydroge 83.9 5.2 0.00011 39.3 8.6 32 12-44 6-38 (241)
391 PRK08594 enoyl-(acyl carrier p 83.9 4 8.7E-05 41.0 7.9 33 10-43 5-40 (257)
392 PF01266 DAO: FAD dependent ox 83.8 1.6 3.4E-05 45.0 5.1 35 14-49 1-35 (358)
393 PF05368 NmrA: NmrA-like famil 83.8 14 0.0003 36.2 11.6 94 15-134 1-100 (233)
394 PRK06200 2,3-dihydroxy-2,3-dih 83.8 3.7 8.1E-05 41.0 7.6 35 10-45 4-39 (263)
395 PLN00016 RNA-binding protein; 83.8 4.7 0.0001 43.1 8.8 115 8-142 48-171 (378)
396 PRK05884 short chain dehydroge 83.7 3.3 7E-05 40.7 7.0 30 14-44 2-32 (223)
397 PRK12409 D-amino acid dehydrog 83.6 1.5 3.2E-05 47.3 4.9 33 13-46 2-34 (410)
398 PRK00811 spermidine synthase; 83.6 4.1 8.8E-05 42.1 7.9 35 11-46 76-110 (283)
399 PRK10537 voltage-gated potassi 83.6 4.3 9.2E-05 44.1 8.4 88 11-128 239-327 (393)
400 PRK12862 malic enzyme; Reviewe 83.5 2.1 4.6E-05 50.3 6.4 40 8-47 189-230 (763)
401 TIGR01746 Thioester-redct thio 83.5 13 0.00028 38.5 11.9 30 14-43 1-32 (367)
402 COG1064 AdhP Zn-dependent alco 83.5 10 0.00022 40.3 10.8 72 12-112 167-238 (339)
403 PRK08416 7-alpha-hydroxysteroi 83.5 4.7 0.0001 40.3 8.2 34 8-42 4-38 (260)
404 PRK15059 tartronate semialdehy 83.5 5 0.00011 41.6 8.5 31 14-45 2-32 (292)
405 COG0281 SfcA Malic enzyme [Ene 83.4 1.1 2.4E-05 48.4 3.8 100 8-136 195-300 (432)
406 PRK08229 2-dehydropantoate 2-r 83.4 1.4 3E-05 46.3 4.5 32 13-45 3-34 (341)
407 COG0771 MurD UDP-N-acetylmuram 83.4 2.6 5.5E-05 46.5 6.6 38 10-48 5-42 (448)
408 PRK14194 bifunctional 5,10-met 83.3 2.9 6.3E-05 43.7 6.7 77 9-137 156-233 (301)
409 PRK08267 short chain dehydroge 83.3 3.9 8.4E-05 40.7 7.5 31 13-44 2-33 (260)
410 PRK06728 aspartate-semialdehyd 83.3 4.6 0.0001 43.1 8.3 90 12-135 5-99 (347)
411 TIGR01757 Malate-DH_plant mala 83.2 5.5 0.00012 43.1 9.0 76 13-112 45-129 (387)
412 COG0665 DadA Glycine/D-amino a 83.2 1.8 3.8E-05 45.8 5.3 41 11-52 3-43 (387)
413 COG1712 Predicted dinucleotide 83.2 4.6 9.9E-05 40.4 7.5 85 13-132 1-88 (255)
414 PRK09310 aroDE bifunctional 3- 83.2 1.5 3.3E-05 48.7 4.9 33 10-43 330-362 (477)
415 PF12847 Methyltransf_18: Meth 83.1 6.7 0.00015 33.5 8.0 77 12-111 2-78 (112)
416 PRK02705 murD UDP-N-acetylmura 83.1 5.8 0.00013 43.5 9.4 32 13-45 1-32 (459)
417 PLN02256 arogenate dehydrogena 83.1 1.6 3.4E-05 45.7 4.6 93 8-136 32-128 (304)
418 PRK14874 aspartate-semialdehyd 83.0 5.6 0.00012 42.1 8.8 92 13-135 2-94 (334)
419 PRK08936 glucose-1-dehydrogena 82.9 5.4 0.00012 39.8 8.4 32 10-42 5-37 (261)
420 PRK12746 short chain dehydroge 82.9 3.7 8E-05 40.6 7.1 32 9-41 3-35 (254)
421 PRK12937 short chain dehydroge 82.8 5.5 0.00012 39.0 8.3 32 10-42 3-35 (245)
422 PRK06182 short chain dehydroge 82.8 2.7 5.9E-05 42.3 6.2 33 11-44 2-35 (273)
423 PLN02494 adenosylhomocysteinas 82.7 1.7 3.7E-05 48.1 4.9 36 10-46 252-287 (477)
424 PRK12745 3-ketoacyl-(acyl-carr 82.7 6.7 0.00015 38.7 8.9 31 12-43 2-33 (256)
425 PRK09291 short chain dehydroge 82.7 6.3 0.00014 38.9 8.7 31 12-43 2-33 (257)
426 PRK08945 putative oxoacyl-(acy 82.6 2.1 4.5E-05 42.3 5.2 37 8-45 8-45 (247)
427 PRK08862 short chain dehydroge 82.6 4.9 0.00011 39.7 7.8 33 10-43 3-36 (227)
428 PRK14620 NAD(P)H-dependent gly 82.6 1.7 3.7E-05 45.5 4.8 32 14-46 2-33 (326)
429 PRK14188 bifunctional 5,10-met 82.6 3.2 6.9E-05 43.3 6.6 77 9-137 155-232 (296)
430 PRK06701 short chain dehydroge 82.6 5.8 0.00013 40.6 8.6 36 8-44 42-78 (290)
431 PRK06057 short chain dehydroge 82.5 1.6 3.4E-05 43.5 4.3 36 9-45 4-40 (255)
432 PRK12825 fabG 3-ketoacyl-(acyl 82.5 4.9 0.00011 39.1 7.7 28 10-37 4-32 (249)
433 TIGR03603 cyclo_dehy_ocin bact 82.5 2.4 5.2E-05 44.7 5.8 75 376-456 239-316 (318)
434 TIGR01377 soxA_mon sarcosine o 82.4 1.7 3.8E-05 45.9 4.8 33 14-47 2-34 (380)
435 PRK08300 acetaldehyde dehydrog 82.4 7 0.00015 40.9 9.0 100 11-137 3-103 (302)
436 PRK06046 alanine dehydrogenase 82.3 6.8 0.00015 41.3 9.2 74 12-113 129-203 (326)
437 PRK12748 3-ketoacyl-(acyl-carr 82.3 2.6 5.6E-05 42.0 5.7 35 10-45 3-40 (256)
438 PRK12921 2-dehydropantoate 2-r 82.2 1.7 3.8E-05 44.7 4.6 31 13-44 1-31 (305)
439 PRK08264 short chain dehydroge 82.1 1.9 4.2E-05 42.2 4.7 36 10-45 4-40 (238)
440 PRK07904 short chain dehydroge 82.1 7.9 0.00017 38.7 9.2 33 12-44 8-41 (253)
441 TIGR00137 gid_trmFO tRNA:m(5)U 82.0 1.8 3.9E-05 47.5 4.7 32 13-45 1-32 (433)
442 PF05834 Lycopene_cycl: Lycope 81.9 5.7 0.00012 42.5 8.6 103 15-133 2-106 (374)
443 PRK12809 putative oxidoreducta 81.9 9 0.0002 44.2 10.7 35 11-46 309-343 (639)
444 PRK06720 hypothetical protein; 81.9 5.9 0.00013 37.6 7.8 36 9-45 13-49 (169)
445 PRK12481 2-deoxy-D-gluconate 3 81.9 5.9 0.00013 39.5 8.2 33 10-43 6-39 (251)
446 PF01494 FAD_binding_3: FAD bi 81.8 1.9 4.2E-05 44.3 4.8 33 13-46 2-34 (356)
447 PRK15438 erythronate-4-phospha 81.8 1.8 3.8E-05 46.7 4.5 35 9-44 113-147 (378)
448 PRK06841 short chain dehydroge 81.8 2 4.3E-05 42.5 4.7 34 10-44 13-47 (255)
449 PTZ00075 Adenosylhomocysteinas 81.7 1.9 4.2E-05 47.7 4.9 37 9-46 251-287 (476)
450 PRK06398 aldose dehydrogenase; 81.7 5.2 0.00011 40.0 7.8 74 9-87 3-78 (258)
451 PRK08303 short chain dehydroge 81.6 6.7 0.00014 40.7 8.7 35 10-45 6-41 (305)
452 PRK05650 short chain dehydroge 81.6 6.5 0.00014 39.5 8.5 30 14-44 2-32 (270)
453 TIGR02197 heptose_epim ADP-L-g 81.6 6.3 0.00014 40.2 8.5 30 15-44 1-31 (314)
454 PLN00106 malate dehydrogenase 81.6 2.2 4.8E-05 45.0 5.1 36 11-46 17-54 (323)
455 PRK07791 short chain dehydroge 81.4 5.2 0.00011 40.9 7.8 35 9-44 3-38 (286)
456 TIGR01763 MalateDH_bact malate 81.4 2.1 4.5E-05 44.8 4.8 32 13-44 2-33 (305)
457 COG2085 Predicted dinucleotide 81.3 6.7 0.00015 38.8 8.0 131 13-146 2-190 (211)
458 TIGR02415 23BDH acetoin reduct 81.3 6.7 0.00015 38.7 8.3 31 13-44 1-32 (254)
459 PRK07424 bifunctional sterol d 81.2 4.9 0.00011 43.8 7.8 33 10-43 176-209 (406)
460 PF11543 UN_NPL4: Nuclear pore 81.2 1.2 2.6E-05 37.2 2.4 62 437-512 15-76 (80)
461 PRK00711 D-amino acid dehydrog 81.2 2.1 4.5E-05 46.0 4.9 33 13-46 1-33 (416)
462 PRK00257 erythronate-4-phospha 81.2 1.9 4.1E-05 46.6 4.5 35 9-44 113-147 (381)
463 PRK11873 arsM arsenite S-adeno 81.2 7.3 0.00016 39.5 8.7 76 11-110 77-153 (272)
464 PRK06270 homoserine dehydrogen 81.1 9.8 0.00021 40.4 9.9 23 12-34 2-24 (341)
465 TIGR01289 LPOR light-dependent 81.0 6.4 0.00014 40.9 8.4 33 11-43 2-35 (314)
466 PRK07201 short chain dehydroge 81.0 5.3 0.00012 45.7 8.5 35 9-44 368-403 (657)
467 PRK13303 L-aspartate dehydroge 80.7 8.7 0.00019 39.2 9.0 22 13-34 2-23 (265)
468 PRK14618 NAD(P)H-dependent gly 80.6 2.3 4.9E-05 44.7 4.8 32 13-45 5-36 (328)
469 cd01076 NAD_bind_1_Glu_DH NAD( 80.6 2.2 4.8E-05 42.7 4.5 37 9-45 28-64 (227)
470 PRK05557 fabG 3-ketoacyl-(acyl 80.4 7.7 0.00017 37.7 8.3 32 10-42 3-35 (248)
471 PRK08628 short chain dehydroge 80.3 6.6 0.00014 38.9 7.9 34 10-44 5-39 (258)
472 PRK07574 formate dehydrogenase 80.3 2.1 4.6E-05 46.3 4.6 92 9-135 189-284 (385)
473 PF00670 AdoHcyase_NAD: S-aden 80.3 2.4 5.2E-05 40.2 4.4 89 9-135 20-110 (162)
474 PRK08993 2-deoxy-D-gluconate 3 80.1 6.4 0.00014 39.1 7.8 34 9-43 7-41 (253)
475 TIGR03451 mycoS_dep_FDH mycoth 80.1 6.9 0.00015 41.2 8.4 33 12-44 177-209 (358)
476 PRK12859 3-ketoacyl-(acyl-carr 80.1 7.8 0.00017 38.6 8.4 34 9-43 3-39 (256)
477 PRK06487 glycerate dehydrogena 80.0 2.1 4.6E-05 45.0 4.4 34 9-43 145-178 (317)
478 PRK12814 putative NADPH-depend 80.0 11 0.00024 43.6 10.6 34 11-45 192-225 (652)
479 PRK09135 pteridine reductase; 80.0 7.5 0.00016 38.0 8.1 32 11-43 5-37 (249)
480 PLN02172 flavin-containing mon 80.0 1.8 4E-05 47.9 4.0 41 1-44 1-41 (461)
481 PRK06436 glycerate dehydrogena 79.9 2.3 4.9E-05 44.5 4.5 35 9-44 119-153 (303)
482 PRK06463 fabG 3-ketoacyl-(acyl 79.9 5.5 0.00012 39.5 7.2 34 9-43 4-38 (255)
483 PRK07608 ubiquinone biosynthes 79.8 2.4 5.3E-05 45.0 4.9 35 12-47 5-39 (388)
484 cd00704 MDH Malate dehydrogena 79.8 2.3 4.9E-05 44.9 4.5 33 13-45 1-40 (323)
485 TIGR00465 ilvC ketol-acid redu 79.7 2 4.3E-05 45.2 4.0 32 10-42 1-32 (314)
486 PTZ00188 adrenodoxin reductase 79.7 12 0.00027 41.8 10.3 97 11-114 38-137 (506)
487 TIGR01963 PHB_DH 3-hydroxybuty 79.7 9.5 0.00021 37.5 8.8 32 13-45 2-34 (255)
488 KOG1371 UDP-glucose 4-epimeras 79.6 7.8 0.00017 40.8 8.2 114 12-145 2-137 (343)
489 PRK01747 mnmC bifunctional tRN 79.5 2.4 5.1E-05 49.1 4.9 33 13-46 261-293 (662)
490 COG1486 CelF Alpha-galactosida 79.5 6.5 0.00014 43.1 7.9 145 11-186 2-157 (442)
491 TIGR01500 sepiapter_red sepiap 79.5 7.1 0.00015 38.9 7.9 58 14-91 2-64 (256)
492 cd05297 GH4_alpha_glucosidase_ 79.3 4.9 0.00011 44.0 7.0 94 14-129 2-102 (423)
493 TIGR01772 MDH_euk_gproteo mala 79.3 2.6 5.6E-05 44.3 4.7 33 14-46 1-35 (312)
494 cd08239 THR_DH_like L-threonin 79.2 8.4 0.00018 40.0 8.5 33 12-44 164-196 (339)
495 PLN02986 cinnamyl-alcohol dehy 79.1 9.1 0.0002 39.5 8.8 31 11-42 4-35 (322)
496 PRK11101 glpA sn-glycerol-3-ph 79.0 2.7 5.8E-05 47.5 5.0 36 12-48 6-41 (546)
497 PRK07825 short chain dehydroge 78.9 3.2 7E-05 41.7 5.2 35 10-45 3-38 (273)
498 PLN02260 probable rhamnose bio 78.9 15 0.00033 42.5 11.3 34 11-44 5-40 (668)
499 PRK09126 hypothetical protein; 78.9 2.4 5.2E-05 45.1 4.5 36 11-47 2-37 (392)
500 TIGR02028 ChlP geranylgeranyl 78.8 2.4 5.2E-05 45.8 4.4 31 14-45 2-32 (398)
No 1
>KOG2013 consensus SMT3/SUMO-activating complex, catalytic component UBA2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.1e-117 Score=913.95 Aligned_cols=488 Identities=51% Similarity=0.819 Sum_probs=423.3
Q ss_pred CCCHHHHHHHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCC
Q 008516 1 MVSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRP 80 (563)
Q Consensus 1 ~~~~~~q~kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np 80 (563)
|.+.+.++.+.++|||||||||||||++|+|+++|+++|||||+|||++||||||||||.+|||++||.+|++.++++||
T Consensus 1 ~~~~~~~eai~~~riLvVGaGGIGCELLKnLal~gf~~IhiIDlDTIDlSNLNRQFLFrkkhVgqsKA~vA~~~v~~Fnp 80 (603)
T KOG2013|consen 1 MSPREKHEAIKSGRILVVGAGGIGCELLKNLALTGFEEIHIIDLDTIDLSNLNRQFLFRKKHVGQSKATVAAKAVKQFNP 80 (603)
T ss_pred CchHHHHHHhccCeEEEEecCcccHHHHHHHHHhcCCeeEEEeccceeccchhhhheeehhhcCchHHHHHHHHHHHhCC
Confidence 67888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEeccCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEeccccceeeEEEEeCCCCccccccCCC
Q 008516 81 QMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKP 160 (563)
Q Consensus 81 ~v~I~~~~~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~G~~G~v~v~~~~~t~Cy~C~~~~ 160 (563)
++++.+++.+|++..|+.+||++||+|++|+||.+||+|+|++|..+++|+|++||.||.|||+++++|.|+||+|.++|
T Consensus 81 n~~l~~yhanI~e~~fnv~ff~qfdiV~NaLDNlaAR~yVNr~C~~a~vPLIesGt~Gf~GQv~~ii~GkTECyeC~pK~ 160 (603)
T KOG2013|consen 81 NIKLVPYHANIKEPKFNVEFFRQFDIVLNALDNLAARRYVNRMCLAASVPLIESGTGGFLGQVQVIIKGKTECYECIPKP 160 (603)
T ss_pred CCceEeccccccCcchHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhcCCceecCcccccceEEEEecCCcceecccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCceeeccCCCCchhHHHHHHHHHHHHHhCCCCcccccccCCccc--c---------chhhhhhhhhcCCchhHHH
Q 008516 161 APKTYPVCTITSTPSKFVHCIVWAKDLLFAKLFGDKNQENDLNVRSSDA--S---------SSAHAEDVFVRRKDEDIDQ 229 (563)
Q Consensus 161 ~~~~~p~cti~~~p~~~~hci~~a~~~lf~~lf~~~~~~~~~~~~~~~~--~---------~~~~~~~~~~~~~~~~~~~ 229 (563)
+|++||+|||||+|++++|||+|||+++|+++|++.....+.....++. . .....+++.+++ ++..+
T Consensus 161 ~~kTypvCTIRstPS~~iHCIVWAK~~lF~qlF~~d~~~q~~~~d~~d~d~~e~~t~~~~~~~~et~d~~Er~--~~i~~ 238 (603)
T KOG2013|consen 161 VPKTYPVCTIRSTPSEPIHCIVWAKHYLFNQLFGEDDDDQYGRHDNADPDNCEDMTEEEAEAFRETEDLKERR--ESIVE 238 (603)
T ss_pred CCCcCCceEeecCCCCceeeeeehHhHHHHHHhccccccccccccccCchhhhccChhhhhhhccchHHHHHH--HHHHH
Confidence 9999999999999999999999999989999999754432111111111 0 011112222222 23344
Q ss_pred HH-------HHHhhhhhhccHHHHhcCCcccCCCCCCCccccCCCCCcchhhhcccccccccccchhhhHHhhcCCCCCC
Q 008516 230 YG-------RRIYDHVFGYNIEVASSNEETWKNRNRPKPIYSADVMPENLTEQNGNVAKNCVVDTSSVSAMASLGLKNPQ 302 (563)
Q Consensus 230 ~a-------~~~f~~~F~~~I~~ll~~~~~W~~~~~P~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (563)
|. ..+|+++|.+||++|+.|+..|+.|++|.||+|.+.........+.. .. +.--...++|
T Consensus 239 ~~~~~~~~~~~i~~klF~~dI~yl~~~e~~wk~r~~p~pl~~~~~i~~~~~t~ns~-----------~q-~~~~a~~~~~ 306 (603)
T KOG2013|consen 239 IDKNLDFGPFKIFNKLFIYDIEYLLGMEALWKPRSRPVPLSIAEVISTSLETINSI-----------VQ-SITSAQLNDQ 306 (603)
T ss_pred HhhccCCChhhhhhHHHHHHHHHHHhhhhhccCCCCCCCcchhhccCCccccccch-----------hh-hccccccCCc
Confidence 43 56899999999999999999999999999999986654433221110 00 0111235689
Q ss_pred CccccccchHHHHHHHHHHHHhhhhccCC--cccCCCcHhHHHHHHHHHHHHHHHcCCCCCCHHHHHhhhcccccchhhH
Q 008516 303 DTWTLLESSRIFLEALKLFFAKREKEIGN--LSFDKDDQLAVEFVTAAANIRAASFGISLHSLFEAKGIAGNIVHAVATT 380 (563)
Q Consensus 303 ~~~s~~e~~~~f~~~~~~l~~~~~~~~~~--l~FdKDDd~h~dFV~AasNLRA~~f~I~~~s~~~~K~iAGnIIPAIATT 380 (563)
.+|+++++..+|..+++.+..+..+.... +.|||||.+.|+||+||||+||+.|+||++|.|++|+||||||||||||
T Consensus 307 ~v~~v~~~~~vf~~~i~~l~~~~~~~~~h~~l~fdKdd~~~~~FVaaaaNiRa~if~ipmkS~Fdik~mAgnIipaIAtT 386 (603)
T KOG2013|consen 307 NVWTVDEGAVVFRLSIQALDLRCPKESDHWYLIFDKDDASTMEFVAAAANIRAHIFGIPMKSLFDIKQMAGNIIPAIATT 386 (603)
T ss_pred ceeeeccccHHHHHHHHHhcccCCccCCCceEEEcCCcHHHHHHHHHHhhhhhhhhccchhhhhchHhHhcccchhhhhh
Confidence 99999999999999999986665554454 8999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCccccceeeecccc-cccccccccCCCCCCCCcccCCCccEEEEEcCCCCCHHHHHHHHHHH
Q 008516 381 NAIIAGLIVIEAIKVLLKDTDKYRMTYCLEHI-TKKMLLMPVEPYEPNKSCYVCSETPLSLEINTSRSKLRDFVEKIVKA 459 (563)
Q Consensus 381 nAiVAGl~vlE~~K~l~~~~~~~r~~f~~~~~-~~~~~~~p~~~~~pn~~C~vC~~~~~~l~i~~~~~TL~~li~~~lk~ 459 (563)
||||||++|+|++|+|+|....++++|+..++ .+++++.|..+.||||+||||+...+.++++...+||++|+|.++|.
T Consensus 387 NAiIagliv~eaiKvl~~~~~~~~~~f~~~~~n~r~r~l~~~~~~~PNp~C~vCs~~~~~l~ln~~~~~~~~L~D~ivk~ 466 (603)
T KOG2013|consen 387 NAIIAGLIVTEAIKVLGGDFDDCNMIFLAKRPNPRKRVLLPWALRPPNPNCPVCSEVPLVLELNTRKSTLRDLVDKIVKT 466 (603)
T ss_pred hhHHHHHHHHHHHHHhccchhcceeeEEccCCCccceeecccccCCCCCCCccccccceEEEeccccchHHHHHHHHHHH
Confidence 99999999999999999999999999998883 37889999999999999999999889999999999999999999999
Q ss_pred hcCCCcCeEEe-cCeEEEeeCCCchHHHHHHhhhhhhcchhhhcCcccCCCcceeec
Q 008516 460 KLGINFPLIMH-GSNLLYEVGDDLDEVEVANYAANLEKVKIQASSVTLCSSPPDFCC 515 (563)
Q Consensus 460 ~~~l~~~~i~~-g~~~LY~~~~~~~~~~~~~~~~nl~k~L~el~~gv~~g~~~~~~~ 515 (563)
+++| .|.|+. ...++|+. .|++|++|+|+|| |+.+|++..+..
T Consensus 467 r~~~-~pdvsll~~~Li~~~----------d~e~n~~k~lsel--~i~ngsli~~~~ 510 (603)
T KOG2013|consen 467 RLGY-LPDVSLLDDDLIDDM----------DFEDNLDKTLSEL--GILNGSLINVKD 510 (603)
T ss_pred Hhcc-Ccccchhhhhhcccc----------cchhhhhhhHHhh--CCCCCceEeeec
Confidence 9999 777765 34566654 2789999999999 899999765554
No 2
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=100.00 E-value=3.2e-101 Score=891.81 Aligned_cols=514 Identities=29% Similarity=0.414 Sum_probs=410.0
Q ss_pred CCHHHHHHHcCCcEEEECCcHHHHHHHHHHHHhCC-----CeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHH
Q 008516 2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGF-----QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVL 76 (563)
Q Consensus 2 ~~~~~q~kL~~~~VlvvGaGgiG~ellknLal~Gv-----g~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~ 76 (563)
+++++|++|+++||+||||||+|||++|+|+++|| |+|+|+|+|+|+.|||||||||+.+|||++||++|+++++
T Consensus 409 ~G~~~Q~kL~~~kVlvvGaGGlG~e~lknLal~Gv~~~~~G~i~IvD~D~Ve~SNLnRQfLf~~~dIGk~Ka~vaa~~l~ 488 (1008)
T TIGR01408 409 FGDTFQQKLQNLNIFLVGCGAIGCEMLKNFALMGVGTGKKGMITVTDPDLIEKSNLNRQFLFRPHHIGKPKSYTAADATL 488 (1008)
T ss_pred cCHHHHHHHhhCcEEEECCChHHHHHHHHHHHhCCCcCCCCeEEEECCCEecccccCcCcCCChhHcCcHHHHHHHHHHH
Confidence 67899999999999999999999999999999999 8999999999999999999999999999999999999999
Q ss_pred hhCCCceEEEeccCCCC---CcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEeccccceeeEEEEeCCCCcc
Q 008516 77 KFRPQMSITAHHANVKD---PKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTEC 153 (563)
Q Consensus 77 ~~np~v~I~~~~~~i~~---~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~G~~G~v~v~~~~~t~C 153 (563)
++||+++|+++..++.. ..++.+||+++|+|++|+||.++|.++|++|+.+++|+|++|+.|++|++++++|+.|+|
T Consensus 489 ~~Np~v~I~~~~~~v~~~~e~i~~~~f~~~~dvVi~alDn~~aR~~vn~~c~~~~iPli~~gt~G~~G~v~v~ip~~te~ 568 (1008)
T TIGR01408 489 KINPQIKIDAHQNRVGPETETIFNDEFYEKLDVVINALDNVEARRYVDSRCLAFLKPLLESGTLGTKGNTQVVVPHLTES 568 (1008)
T ss_pred HHCCCCEEEEEEeecChhhhhhhhHHHhhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEeccCceeeEEEEeCCCcCC
Confidence 99999999999999843 356788999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCCceeeccCCCCchhHHHHHHHHHHHHHhCCCCccc-ccccCC------------ccc-cchhhhhhhh
Q 008516 154 YECQPKPAPKTYPVCTITSTPSKFVHCIVWAKDLLFAKLFGDKNQEN-DLNVRS------------SDA-SSSAHAEDVF 219 (563)
Q Consensus 154 y~C~~~~~~~~~p~cti~~~p~~~~hci~~a~~~lf~~lf~~~~~~~-~~~~~~------------~~~-~~~~~~~~~~ 219 (563)
|+|.++|+++++|+|||+++|+.++|||+||++ +|+.+|++..+.. .+...+ ... ..++.+.+.+
T Consensus 569 y~~~~d~~~~~~P~Ctl~~~P~~~~h~i~wa~~-~f~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l 647 (1008)
T TIGR01408 569 YGSSRDPPEKEIPFCTLKSFPAAIEHTIQWARD-KFEGLFSHKPSLVNKYLSSPSSAEEVLQKIQSGHSREGLEQIIKLL 647 (1008)
T ss_pred CCCCCCCCCCCCCcccccCCCCCchHHHHHHHH-HHHHHHHhhHHHHHHHhhChHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999 8999999765532 111111 000 0123333333
Q ss_pred ---hcCCchhHHHHHHHHhhhhhhccHHHHhcC----------CcccCC-CCCCCccccCCC--CCcchhhhcccccccc
Q 008516 220 ---VRRKDEDIDQYGRRIYDHVFGYNIEVASSN----------EETWKN-RNRPKPIYSADV--MPENLTEQNGNVAKNC 283 (563)
Q Consensus 220 ---~~~~~~~~~~~a~~~f~~~F~~~I~~ll~~----------~~~W~~-~~~P~pl~~~~~--~~~~~~~~~~~~~~~~ 283 (563)
.+.++++|++||+.+|+++|+++|+|||.+ ++||++ ||+|+||.|+.. +|..+....++|.+..
T Consensus 648 ~~~~p~~~~~cv~~a~~~f~~~F~~~I~qLl~~fP~d~~~~~G~~fWs~~kr~P~pl~Fd~~~~~h~~Fi~aaanL~A~~ 727 (1008)
T TIGR01408 648 SKEKPRNFSQCVEWARLKFEKYFNNKALQLLHCFPLDIRTSTGSPFWSSPKRPPSPLKFDLNEPLHLSFIQAAAKLYATV 727 (1008)
T ss_pred hhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccCCCccccCCCCCCCceeeCCCCHHHHHHHHHHHHHHHHH
Confidence 245899999999999999999999999987 899995 999999999943 4445555555554331
Q ss_pred ---cc---cchhhhHHh---hcCC-----CCCCCcccccc------chHHHHHHHHHHHHhhh--------hccCCcccC
Q 008516 284 ---VV---DTSSVSAMA---SLGL-----KNPQDTWTLLE------SSRIFLEALKLFFAKRE--------KEIGNLSFD 335 (563)
Q Consensus 284 ---~~---~~~~~~~~~---~~~~-----~~~~~~~s~~e------~~~~f~~~~~~l~~~~~--------~~~~~l~Fd 335 (563)
.. +.......+ ...+ +..+++|+.+. +...+.+++.++..+.. ..+.|++||
T Consensus 728 ygi~~~~~~~~~~~~~~~~~~~~vp~f~p~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~p~~Fe 807 (1008)
T TIGR01408 728 YGIPFAEEDLSADALLNILSEVKIPEFKPRSNKKIQTDETARKPDTAPEDDRNAIFQLEKAILSNEATKSDFRMAPLSFE 807 (1008)
T ss_pred hCCCCccccchHHHHHHHHhcCCCCCCCCCcCceeecChhhhcccccccchHHHHHHHHHHhhccccccCCCCCCceeec
Confidence 11 110011111 1111 12234454211 11123344554443321 237899999
Q ss_pred CCcHh--HHHHHHHHHHHHHHHcCCCCCCHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHHhcC--ccccceeeeccc
Q 008516 336 KDDQL--AVEFVTAAANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLLKD--TDKYRMTYCLEH 411 (563)
Q Consensus 336 KDDd~--h~dFV~AasNLRA~~f~I~~~s~~~~K~iAGnIIPAIATTnAiVAGl~vlE~~K~l~~~--~~~~r~~f~~~~ 411 (563)
||||+ |||||+|||||||+||+||++|||++|+||||||||||||||+||||+|+|+||+++|+ .+.|||+|+|++
T Consensus 808 KDDd~n~HidFI~AasNLRA~nY~I~~~d~~~~K~iAG~IIPAiATTTA~vaGLv~lEl~Kv~~~~~~i~~~kn~f~nla 887 (1008)
T TIGR01408 808 KDDDHNGHIDFITAASNLRAKNYSIEPADRFKTKFIAGKIIPAIATSTATVSGLVCLELIKVTDGGYKFEVYKNCFLNLA 887 (1008)
T ss_pred cCCCcchHHHHHHHHHhhHHHhcCCCcccHHHHHHHhccccchhhhHHHHHHHHHHHHHHHHHhccccHHHHhHHHHhhc
Confidence 99998 99999999999999999999999999999999999999999999999999999999986 489999999998
Q ss_pred ccccccccccCCCCCCCCcccCCCc-cEEEEEcC-CCCCHHHHHHHHHHHhcCCCcCeEEecCeEEEeeCCCchHHHHHH
Q 008516 412 ITKKMLLMPVEPYEPNKSCYVCSET-PLSLEINT-SRSKLRDFVEKIVKAKLGINFPLIMHGSNLLYEVGDDLDEVEVAN 489 (563)
Q Consensus 412 ~~~~~~~~p~~~~~pn~~C~vC~~~-~~~l~i~~-~~~TL~~li~~~lk~~~~l~~~~i~~g~~~LY~~~~~~~~~~~~~ 489 (563)
.+. +...+|.+|.+.|+....| ++|-++.. .++||++|+++ ++++||+++.||++|+++||+.++. .
T Consensus 888 lp~---~~~seP~~~~~~~~~~~~~~t~WDr~~i~~~~Tl~~~i~~-~~~~~~~~v~~is~g~~~lY~~~~~-------~ 956 (1008)
T TIGR01408 888 IPL---FVFTEPTEVRKTKIRNGISFTIWDRWTLHGDFTLLEFINA-VKEKYGLEPTMVSQGVKLLYVPVMP-------G 956 (1008)
T ss_pred ccc---ccccCCCCCCceeecCceeccceEEEEecCCCcHHHHHHH-HHHHhCCeeEEEEcCceEEEeccch-------h
Confidence 443 3334455555666554455 56544432 48999999999 6889999999999999999999863 2
Q ss_pred hhhhhhcchhhhcCcccCCCc--------ceeeccCC---CccceeeEE
Q 008516 490 YAANLEKVKIQASSVTLCSSP--------PDFCCSCN---DADVLLFCF 527 (563)
Q Consensus 490 ~~~nl~k~L~el~~gv~~g~~--------~~~~~~~~---~~d~~~~~~ 527 (563)
.+++|+|+|+||..-+....+ ++++|+.+ |+|+|+...
T Consensus 957 ~~erl~~~l~el~~~~~k~~~~~~~~~l~~~~~~~d~~~~dv~~P~v~~ 1005 (1008)
T TIGR01408 957 HAERLKLKMHKLVKPTTKKKLPPYRVHLTVSFACDDDGDEDVPGPPVRI 1005 (1008)
T ss_pred hHHhcCCCHHHHHHHhccCCCCCCceEEEEEEEeecCCCCcccCCeEEE
Confidence 468899999999754544433 46666653 466887764
No 3
>KOG2012 consensus Ubiquitin activating enzyme UBA1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.8e-100 Score=823.64 Aligned_cols=510 Identities=30% Similarity=0.453 Sum_probs=402.6
Q ss_pred CCHHHHHHHcCCcEEEECCcHHHHHHHHHHHHhCCC-----eEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHH
Q 008516 2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQ-----DIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVL 76 (563)
Q Consensus 2 ~~~~~q~kL~~~~VlvvGaGgiG~ellknLal~Gvg-----~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~ 76 (563)
||...|+||.++++++||||+||||++||++++|+| +|+++|||.||.||||||||||+.||||+||++|+++++
T Consensus 420 fG~~fqeKL~~~~~FlVGaGAIGCE~LKN~am~Gvg~g~~g~ItVTDmD~IEkSNLnRQFLFR~~dVgk~KSe~AA~A~~ 499 (1013)
T KOG2012|consen 420 FGAKFQEKLADQKVFLVGAGAIGCELLKNFALMGVGCGNSGKITVTDMDHIEKSNLNRQFLFRPWDVGKPKSEVAAAAAR 499 (1013)
T ss_pred hchHHHHHHhhCcEEEEccchhhHHHHHhhhheeeccCCCCceEEeccchhhhccccceeeccccccCchHHHHHHHHHH
Confidence 678899999999999999999999999999999994 799999999999999999999999999999999999999
Q ss_pred hhCCCceEEEeccCC---CCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEeccccceeeEEEEeCCCCcc
Q 008516 77 KFRPQMSITAHHANV---KDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTEC 153 (563)
Q Consensus 77 ~~np~v~I~~~~~~i---~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~G~~G~v~v~~~~~t~C 153 (563)
.+||+++|+++..++ +|..|+++||.+.|+|.+|+||++||+|+++.|+.+.+|++++||.|++|+++|++|+.|+.
T Consensus 500 ~mNp~l~I~a~~~rvgpeTE~If~D~Ff~~ld~VanALDNVdAR~YvD~RCv~~~kPLLESGTlGTKGntQVvvPhlTEs 579 (1013)
T KOG2012|consen 500 GMNPDLNIIALQNRVGPETEHIFNDEFFENLDGVANALDNVDARRYVDRRCVYYRKPLLESGTLGTKGNTQVVVPHLTES 579 (1013)
T ss_pred hcCCCceeeehhhccCcccccccchhHHhhhHHHHHhhcchhhhhhhhhhhhhhccchhhccCcCCccceeEEecccccc
Confidence 999999999999998 77899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCCceeeccCCCCchhHHHHHHHHHHHHHhCCCCcccc--cc-cC--------Ccccc---chhhhhhhh
Q 008516 154 YECQPKPAPKTYPVCTITSTPSKFVHCIVWAKDLLFAKLFGDKNQEND--LN-VR--------SSDAS---SSAHAEDVF 219 (563)
Q Consensus 154 y~C~~~~~~~~~p~cti~~~p~~~~hci~~a~~~lf~~lf~~~~~~~~--~~-~~--------~~~~~---~~~~~~~~~ 219 (563)
|..+.+|+++++|+||++|+|+.++|||+|||+ .|+.+|.+..+..+ +. +. ..+.. .++.+.+.+
T Consensus 580 Y~SS~DPPEksiP~CTlknFPn~IeHTiqWAR~-eFEg~F~~~~e~vN~yls~p~f~e~sl~~~~~~~~~~~l~~v~~~l 658 (1013)
T KOG2012|consen 580 YGSSRDPPEKSIPVCTLKSFPNAIEHTIQWARD-EFEGLFKQSAENVNKYLSDPVFYETSLKLIGEPQSLETLERVVDCL 658 (1013)
T ss_pred ccccCCCcccCCceeeeccCchHHHHHHHHHHH-HHHHHhhCCHHHHHHHhcCchHHHHHHhhccCcchhHHHHHHHHHh
Confidence 999999999999999999999999999999999 89999987655321 11 10 00011 122222333
Q ss_pred --hcCCchhHHHHHHHHhhhhhhccHHHHhcC----------CcccCC-CCCCCccccCCCCCc--chhhhcccccccc-
Q 008516 220 --VRRKDEDIDQYGRRIYDHVFGYNIEVASSN----------EETWKN-RNRPKPIYSADVMPE--NLTEQNGNVAKNC- 283 (563)
Q Consensus 220 --~~~~~~~~~~~a~~~f~~~F~~~I~~ll~~----------~~~W~~-~~~P~pl~~~~~~~~--~~~~~~~~~~~~~- 283 (563)
.+.++++|++||+..|+++|+++|+|||.. .+||++ ||+|.||+||...+. .+....+++++..
T Consensus 659 ~~rp~~~~dCv~warl~f~~~f~~~ikqLl~~FP~d~~t~~G~pFWs~pKr~P~pl~Fd~n~~~hl~fv~Aaa~l~a~~~ 738 (1013)
T KOG2012|consen 659 SERPQNWQDCVEWARLHFEKYFHNRIKQLLHNFPPDAKTSDGAPFWSGPKRCPRPLEFDVNDPLHLNFVQAAANLRAEVY 738 (1013)
T ss_pred hcCCccHHHHHHHHHHHHHHHhhHHHHHhhcCCCcccccCCCCcCCCCCCCCCCceeecCCCchhHHHHHHHHHHHHHhc
Confidence 346799999999999999999999999975 799985 889999999954443 3444444443211
Q ss_pred --cccchhhhHH---hhcCC---CCCCC--c-----------cccccchHHHHHHHHHHHHhhh----hccCCcccCCCc
Q 008516 284 --VVDTSSVSAM---ASLGL---KNPQD--T-----------WTLLESSRIFLEALKLFFAKRE----KEIGNLSFDKDD 338 (563)
Q Consensus 284 --~~~~~~~~~~---~~~~~---~~~~~--~-----------~s~~e~~~~f~~~~~~l~~~~~----~~~~~l~FdKDD 338 (563)
+...+..... ..... .+.+. + -++.+.. -++.++..+.+.. ..+.|+.|||||
T Consensus 739 gi~~~~d~~~~~~~~~~v~~p~f~P~~~~~i~~~~~~~~~~~~s~d~~~--~i~~l~~~l~~~~~~~~~~~~p~~FEKDD 816 (1013)
T KOG2012|consen 739 GIPGSQDREALAELLERVIVPEFEPKQKVKIVVEEAELAASSASVDDSA--AIDQLNKALPSPSVLPSFKMKPLDFEKDD 816 (1013)
T ss_pred CCCcccCHHHhhhhHhhcCCCccccccCCeecccccccccccccCCchH--HHHHHhhcccccccCCCCceeeeeecccc
Confidence 0000000000 00000 00000 0 0111111 1222222222211 247899999999
Q ss_pred Hh--HHHHHHHHHHHHHHHcCCCCCCHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHHhcC--ccccceeeecccccc
Q 008516 339 QL--AVEFVTAAANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLLKD--TDKYRMTYCLEHITK 414 (563)
Q Consensus 339 d~--h~dFV~AasNLRA~~f~I~~~s~~~~K~iAGnIIPAIATTnAiVAGl~vlE~~K~l~~~--~~~~r~~f~~~~~~~ 414 (563)
|. |||||+|||||||.||+||++||+++|+|||+||||||||||+|+||+|+|+||++.|+ .+.|||+|+|++.+.
T Consensus 817 DsN~H~dfi~aasnlRA~nY~I~~adr~k~K~IaGkIIPAIATtTa~v~Glv~LElyKv~~G~~~~e~~Kn~flnLAlp~ 896 (1013)
T KOG2012|consen 817 DSNFHMDFITAASNLRAQNYSIPPADRLKTKRIAGKIIPAIATTTAAVSGLVCLELYKVVDGKRPVEAYKNTFLNLALPF 896 (1013)
T ss_pred ccccchHHHHHHhhhhhhccCCCccchhhhheeeeeEEEEEeehhHHHHHHHHhhhhhhccCCCchHHhhhhhhcccccc
Confidence 97 99999999999999999999999999999999999999999999999999999999995 489999999999544
Q ss_pred cccccccCCCCCCCCcccCC-CccEEEEEcC-CCCCHHHHHHHHHHHhcCCCcCeEEecCeEEEeeCCCchHHHHHHhhh
Q 008516 415 KMLLMPVEPYEPNKSCYVCS-ETPLSLEINT-SRSKLRDFVEKIVKAKLGINFPLIMHGSNLLYEVGDDLDEVEVANYAA 492 (563)
Q Consensus 415 ~~~~~p~~~~~pn~~C~vC~-~~~~~l~i~~-~~~TL~~li~~~lk~~~~l~~~~i~~g~~~LY~~~~~~~~~~~~~~~~ 492 (563)
..+. +|.++.+.-+.-. .|++|.+... .++||++|+++ +++++|+++.||+.|+++||..+++ ...+
T Consensus 897 f~~~---ep~~~pk~~~~~~~~~tlWdR~~v~g~~tL~~~L~~-~~~~~gl~i~mls~G~~lly~~~~~-------k~~e 965 (1013)
T KOG2012|consen 897 FSFA---EPLAAPKVQYHNDLSWTLWDRWEVKGEPTLREFLDH-LEEQHGLEITMLSQGVSLLYASFMP-------KHAE 965 (1013)
T ss_pred eeec---ccCCCcceeeecccceeeeEEEEecCCCCHHHHHHH-HhhhcCceEEEEeccceeehhhhhh-------HHHH
Confidence 3333 3333223333333 6788766653 47999999999 6889999999999999999999876 4688
Q ss_pred hhhcchhhhcCcccC---C-----CcceeeccC---CCccceee
Q 008516 493 NLEKVKIQASSVTLC---S-----SPPDFCCSC---NDADVLLF 525 (563)
Q Consensus 493 nl~k~L~el~~gv~~---g-----~~~~~~~~~---~~~d~~~~ 525 (563)
+|+++..||+..+.. . -+|+++|+. +|.++|+.
T Consensus 966 rl~~~v~elv~~~~k~~~~~~~~~lvle~~~~d~~~eDve~P~v 1009 (1013)
T KOG2012|consen 966 RLPLRVTELVRDVTKKKLPPHVRHLVLEVACEDDDDEDVEVPPV 1009 (1013)
T ss_pred hcCCcHHHHHHHHhcccCCCcceEEEEEEecCCCCCCcCCCCce
Confidence 999999999652222 1 235777777 77777764
No 4
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=100.00 E-value=1.3e-95 Score=776.54 Aligned_cols=401 Identities=34% Similarity=0.552 Sum_probs=347.4
Q ss_pred cEEEECCcHHHHHHHHHHHHhCC-----CeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEec
Q 008516 14 KVLMVGAGGIGCELLKTLALSGF-----QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH 88 (563)
Q Consensus 14 ~VlvvGaGgiG~ellknLal~Gv-----g~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~ 88 (563)
||+||||||+|||++|+|+++|| |+|+|+|+|+||.|||||||||+++|||++||++|+++++++||+++|+++.
T Consensus 1 kVlvVGaGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~Ie~SNLnRQfLf~~~dIGk~Ka~vAa~~l~~lNp~v~I~a~~ 80 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNLNRQFLFRPHDVGKPKSEVAAAAVKAMNPDLKITALQ 80 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCcCCCCeEEEECCCCccccccCcCccCChhHcCcHHHHHHHHHHHHHCCCCEEEEEe
Confidence 69999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred cCCCC---CcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEeccccceeeEEEEeCCCCccccccCCCCCCCC
Q 008516 89 ANVKD---PKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTY 165 (563)
Q Consensus 89 ~~i~~---~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~G~~G~v~v~~~~~t~Cy~C~~~~~~~~~ 165 (563)
.++.+ ..++.+||+++|+|++|+||.++|.++|++|+.+++|+|++|+.|+.|++++++|+.|+||+|..+|+++++
T Consensus 81 ~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~vn~~C~~~~iPli~~gt~G~~G~v~v~iP~~te~y~~~~~p~~~~~ 160 (435)
T cd01490 81 NRVGPETEHIFNDEFWEKLDGVANALDNVDARMYVDRRCVYYRKPLLESGTLGTKGNTQVVIPHLTESYSSSRDPPEKSI 160 (435)
T ss_pred cccChhhhhhhhHHHhcCCCEEEECCCCHHHHHHHHHHHHHhCCCEEEEecccceeEEEEEeCCCCCCccCCCCCCCCCC
Confidence 98853 356789999999999999999999999999999999999999999999999999999999999998889999
Q ss_pred CceeeccCCCCchhHHHHHHHHHHHHHhCCCCcccccccCCccccchhhhhhhhhcCCchhHHHHHHHHhhhhhhccHHH
Q 008516 166 PVCTITSTPSKFVHCIVWAKDLLFAKLFGDKNQENDLNVRSSDASSSAHAEDVFVRRKDEDIDQYGRRIYDHVFGYNIEV 245 (563)
Q Consensus 166 p~cti~~~p~~~~hci~~a~~~lf~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~f~~~F~~~I~~ 245 (563)
|+||++++|+.++|||+||++ +|+.+|++..+. .+.+. +++|++||+.+|+++|+++|++
T Consensus 161 P~Ctl~~~P~~~eHcI~wA~~-~F~~lF~~~~~~---------------~~~~~----~~~c~~~a~~~f~~~F~~~I~~ 220 (435)
T cd01490 161 PLCTLKNFPNAIEHTIQWARD-EFEGLFKQPPEN---------------VNQYL----FEDCVRWARLLFEKYFNNNIKQ 220 (435)
T ss_pred CCccccCCCCCchHHHHHHHH-HHHHHhccchHH---------------HHHhh----HHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 899999864321 11111 6899999999999999999999
Q ss_pred HhcC----------CcccCC-CCCCCccccCCCCCcchhhhcccccccccccchhhhHHhhcCCCCCCCccccccchHHH
Q 008516 246 ASSN----------EETWKN-RNRPKPIYSADVMPENLTEQNGNVAKNCVVDTSSVSAMASLGLKNPQDTWTLLESSRIF 314 (563)
Q Consensus 246 ll~~----------~~~W~~-~~~P~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~f 314 (563)
||++ ++||++ ||+|+|++|+...+.+ ..|
T Consensus 221 ll~~~p~d~~~~~g~~fw~~~kr~P~p~~fd~~~~~h----------------------------------------~~f 260 (435)
T cd01490 221 LLHNFPPDAVTSDGAPFWSGPKRCPTPLEFDVNNPLH----------------------------------------LDF 260 (435)
T ss_pred HHHhCccccccccccccccCCCCCCCCCCCCCCCHHH----------------------------------------HHH
Confidence 9986 899985 8899999988432211 234
Q ss_pred HHHHHHHHHhhhhccCCcccCCCcHh--HHHHHHHHHHHHHHHcCCCCCCHHHHHhhhcccccchhhHHHHHHHHHHHHH
Q 008516 315 LEALKLFFAKREKEIGNLSFDKDDQL--AVEFVTAAANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEA 392 (563)
Q Consensus 315 ~~~~~~l~~~~~~~~~~l~FdKDDd~--h~dFV~AasNLRA~~f~I~~~s~~~~K~iAGnIIPAIATTnAiVAGl~vlE~ 392 (563)
+.+...+..+.- +-..||||||+ |||||+|||||||+||+|++.|++++|+|||||||||||||||||||+++|+
T Consensus 261 v~~~a~l~a~~~---~~~~FeKDdd~n~h~~fi~a~snlRa~~y~I~~~~~~~~k~iag~IIPAiaTT~aivagl~~~e~ 337 (435)
T cd01490 261 VLAAANLYAEVY---GIPGFEKDDDTNFHMDFITAASNLRARNYSIPPADRHKTKRIAGKIIPAIATTTAAVTGLVCLEL 337 (435)
T ss_pred HHHHHHHHHHhc---CCCccccCCchhHHHHHHHHhhhhHHHHcCCCccCHHHHHHHhhCCCCchhhHHHHHHHHHHHHH
Confidence 444444433221 11239999997 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcC--ccccceeeecccccccccccccCCCCCCCCcccCCCccEE--EEEcCCCCCHHHHH-HHHHHHhcCCCcCe
Q 008516 393 IKVLLKD--TDKYRMTYCLEHITKKMLLMPVEPYEPNKSCYVCSETPLS--LEINTSRSKLRDFV-EKIVKAKLGINFPL 467 (563)
Q Consensus 393 ~K~l~~~--~~~~r~~f~~~~~~~~~~~~p~~~~~pn~~C~vC~~~~~~--l~i~~~~~TL~~li-~~~lk~~~~l~~~~ 467 (563)
+|+++++ .+.|||+|+|++.+. +..+.+..+|+.+|..-..|++| ++++ .++|+++|+ ++ +++++|+++.|
T Consensus 338 ~K~~~~~~~~~~~~n~~~nla~p~--~~~~~p~~~~~~~~~~~~~~t~Wdr~~v~-~~~t~~~~~~~~-~~~~~~~~v~~ 413 (435)
T cd01490 338 YKVVDGKRPLEAYKNAFLNLALPF--FAFSEPIPAPKVKYAYDEEWTIWDRFEVK-GKQTLQELLIDY-FKEKYGLEVTM 413 (435)
T ss_pred HHHHhCCccHHHcchHhhhccCCc--cccccCCCCCccccCCCCEEeeEeEEEEc-CCCcHHHHHHHH-HHHHhCCeEEE
Confidence 9999986 588999999998443 33333344556665222346665 4444 589999999 98 69999999999
Q ss_pred EEecCeEEEeeCCC
Q 008516 468 IMHGSNLLYEVGDD 481 (563)
Q Consensus 468 i~~g~~~LY~~~~~ 481 (563)
|++|+++||..+++
T Consensus 414 i~~g~~~ly~~~~~ 427 (435)
T cd01490 414 LSQGVSMLYSSFMP 427 (435)
T ss_pred EEeCCeEEEeecCC
Confidence 99999999999875
No 5
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=100.00 E-value=6.1e-89 Score=701.32 Aligned_cols=311 Identities=64% Similarity=1.056 Sum_probs=297.8
Q ss_pred cEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccCCCC
Q 008516 14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKD 93 (563)
Q Consensus 14 ~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~i~~ 93 (563)
||+|||+||+|||++|||+++|||+|+|+|+|+||.|||+|||||+++|||++||++++++++++||+++|+++..++++
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~~~i~~ 80 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHANIKD 80 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEeccCCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEeccccceeeEEEEeCCCCccccccCCCCCCCCCceeeccC
Q 008516 94 PKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITST 173 (563)
Q Consensus 94 ~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~G~~G~v~v~~~~~t~Cy~C~~~~~~~~~p~cti~~~ 173 (563)
..++.+|++++|+||+|+||.++|.++|++|+.+++|+|++|+.|+.|++++++|+.++||+|.++++++++|+|||+++
T Consensus 81 ~~~~~~f~~~~DvVv~a~Dn~~ar~~in~~c~~~~ip~I~~gt~G~~G~v~vi~p~~t~c~~c~~~~~~~~~pictI~~~ 160 (312)
T cd01489 81 PDFNVEFFKQFDLVFNALDNLAARRHVNKMCLAADVPLIESGTTGFLGQVQVIKKGKTECYECQPKETPKTFPVCTIRST 160 (312)
T ss_pred ccchHHHHhcCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEecCcceeEEEEEcCCCCCccCCCCCCCCCcCCcceecCC
Confidence 66778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHHhCCCCcccccccCCccccchhhhhhhhhcCCchhHHHHHHHHhhhhhhccHHHHhcCCccc
Q 008516 174 PSKFVHCIVWAKDLLFAKLFGDKNQENDLNVRSSDASSSAHAEDVFVRRKDEDIDQYGRRIYDHVFGYNIEVASSNEETW 253 (563)
Q Consensus 174 p~~~~hci~~a~~~lf~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~f~~~F~~~I~~ll~~~~~W 253 (563)
|+.++|||+||++ +|+ +|+++|+++|++|+++++||
T Consensus 161 p~~~~hci~~a~~-~f~-------------------------------------------~~~~~f~~~i~~l~~~~~~w 196 (312)
T cd01489 161 PSQPIHCIVWAKS-LFF-------------------------------------------LFNKVFKDDIERLLSMEELW 196 (312)
T ss_pred CCCCEeehhHHHH-HHH-------------------------------------------HHHHHHHHHHHHHHhhhhhh
Confidence 9999999999998 554 57889999999999999999
Q ss_pred CCCCCCCccccCCCCCcchhhhcccccccccccchhhhHHhhcCCCCCCCccccccchHHHHHHHHHHHHhhhhccCCcc
Q 008516 254 KNRNRPKPIYSADVMPENLTEQNGNVAKNCVVDTSSVSAMASLGLKNPQDTWTLLESSRIFLEALKLFFAKREKEIGNLS 333 (563)
Q Consensus 254 ~~~~~P~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~f~~~~~~l~~~~~~~~~~l~ 333 (563)
+++++|.|+.|+. ++
T Consensus 197 ~~~~~p~p~~~~~-----------------------------------------------------------------~~ 211 (312)
T cd01489 197 KTRKPPVPLSWKE-----------------------------------------------------------------LT 211 (312)
T ss_pred cCCCCCCCCCCCC-----------------------------------------------------------------cC
Confidence 9988999996541 26
Q ss_pred cCCCcHhHHHHHHHHHHHHHHHcCCCCCCHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHHhcCccccceeeeccc-c
Q 008516 334 FDKDDQLAVEFVTAAANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLLKDTDKYRMTYCLEH-I 412 (563)
Q Consensus 334 FdKDDd~h~dFV~AasNLRA~~f~I~~~s~~~~K~iAGnIIPAIATTnAiVAGl~vlE~~K~l~~~~~~~r~~f~~~~-~ 412 (563)
|||||++||+||+|+|||||++|+|+..|++++|+||||||||||||||||||++++|++|++++..+.+|++|+++. +
T Consensus 212 fdkDd~~~~~~v~~~a~lRa~~f~I~~~~~~~~k~i~g~IiPaiatTnaivag~~~~e~~k~~~~~~~~~~~~~~~~~~~ 291 (312)
T cd01489 212 FDKDDQDALDFVAAAANLRSHVFGIPMKSRFDIKQMAGNIIPAIATTNAIIAGLIVLEALKVLSGDKEQCRTVFLNLQPN 291 (312)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHHhhhHHHhhhHhhhcccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999876 5
Q ss_pred cccccccccCCCCCCCCcccC
Q 008516 413 TKKMLLMPVEPYEPNKSCYVC 433 (563)
Q Consensus 413 ~~~~~~~p~~~~~pn~~C~vC 433 (563)
.+++++.|..+.+|||+|++|
T Consensus 292 ~~~~~~~~~~~~~~n~~c~~c 312 (312)
T cd01489 292 RRKRLLVPCKLDPPNPNCYVC 312 (312)
T ss_pred CCCcEecCCCCCCcCCCCCCC
Confidence 667899999999999999999
No 6
>KOG2015 consensus NEDD8-activating complex, catalytic component UBA3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.4e-70 Score=540.86 Aligned_cols=366 Identities=34% Similarity=0.558 Sum_probs=315.8
Q ss_pred CHHHHHHHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCc
Q 008516 3 SERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQM 82 (563)
Q Consensus 3 ~~~~q~kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v 82 (563)
++|..+.+.+.+|+|+||||+|||++|||+++||+.+++||+|+|+.|||||||||+++|||++||++||+.+.+..|+.
T Consensus 31 ~~e~l~~l~~~kiLviGAGGLGCElLKnLal~gF~~~~viDmDTId~sNLNRQFLF~~~DiG~pKAqvAA~fvn~Rvp~~ 110 (422)
T KOG2015|consen 31 SEENLEFLQDCKILVIGAGGLGCELLKNLALSGFRQLHVIDMDTIDLSNLNRQFLFRESDIGEPKAQVAAEFVNRRVPGC 110 (422)
T ss_pred CHHHHHHHhhCcEEEEccCcccHHHHHhHHhhccceeEEEeecceecccchhhhcccccccCchhHHHHHHHHHhhCCCc
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEeccCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHh---cC-------CCEEEeccccceeeEEEEeCCCCc
Q 008516 83 SITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLA---AD-------VPLVESGTTGFLGQVTVHVKGKTE 152 (563)
Q Consensus 83 ~I~~~~~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~---~~-------~pli~~gt~G~~G~v~v~~~~~t~ 152 (563)
.|.+|..++++ ++.+|+++|++||+++|++++|++||.+..+ .+ +|+||+|+.|++|++.+++|+.|.
T Consensus 111 ~v~~h~~kIqd--~~~~FYk~F~~iicGLDsIeaRRwIN~mL~~l~~~g~~d~~~iiPlIDGGtEG~KG~arvI~Pg~Ta 188 (422)
T KOG2015|consen 111 VVVPHRQKIQD--KPISFYKRFDLIICGLDSIEARRWINGMLVRLKLEGNYDISSIIPLIDGGTEGFKGHARVIYPGITA 188 (422)
T ss_pred EEeeeecchhc--CCHHHHhhhceEEecccchhHHHHHHHHHHHHHhccCCCccceeeeeecCcccccceeEEEecCccH
Confidence 99999999964 5789999999999999999999999998654 22 699999999999999999999999
Q ss_pred cccccCC--CCCCCCCceeeccCCCCchhHHHHHHHHHHHHHhCCCCcccccccCCccccchhhhhhhhhcCCchhHHHH
Q 008516 153 CYECQPK--PAPKTYPVCTITSTPSKFVHCIVWAKDLLFAKLFGDKNQENDLNVRSSDASSSAHAEDVFVRRKDEDIDQY 230 (563)
Q Consensus 153 Cy~C~~~--~~~~~~p~cti~~~p~~~~hci~~a~~~lf~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (563)
|++|..+ |++.+||+|||.|+|+.|+|||+|++-..|.+++.+
T Consensus 189 CieCtldlyppqvs~P~CTiAntPRlpEHciEyv~liqwpe~~~~----------------------------------- 233 (422)
T KOG2015|consen 189 CIECTLDLYPPQVSYPMCTIANTPRLPEHCIEYVKLIQWPELNPF----------------------------------- 233 (422)
T ss_pred HHHhHHhhcCcccCcccceecCCCCCchHhhhhhhhhcchhhCcc-----------------------------------
Confidence 9999954 677889999999999999999999986433322110
Q ss_pred HHHHhhhhhhccHHHHhcCCcccCCCCCCCccccCCCCCcchhhhcccccccccccchhhhHHhhcCCCCCCCccccccc
Q 008516 231 GRRIYDHVFGYNIEVASSNEETWKNRNRPKPIYSADVMPENLTEQNGNVAKNCVVDTSSVSAMASLGLKNPQDTWTLLES 310 (563)
Q Consensus 231 a~~~f~~~F~~~I~~ll~~~~~W~~~~~P~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~ 310 (563)
T Consensus 234 -------------------------------------------------------------------------------- 233 (422)
T KOG2015|consen 234 -------------------------------------------------------------------------------- 233 (422)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHHHHHhhhhccCCcccCCCcHhHHHHHHHHHHHHHHHcCCCCCCHHHHHhhhcccccchhhHHHHHHHHHHH
Q 008516 311 SRIFLEALKLFFAKREKEIGNLSFDKDDQLAVEFVTAAANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVI 390 (563)
Q Consensus 311 ~~~f~~~~~~l~~~~~~~~~~l~FdKDDd~h~dFV~AasNLRA~~f~I~~~s~~~~K~iAGnIIPAIATTnAiVAGl~vl 390 (563)
...+|.||+.||+||.--+|.||..|+|+..+++.+.++..+||||+|||||+||+.++.
T Consensus 234 --------------------g~~~~gdd~~hI~wi~er~~eRA~ef~I~gv~~~lvtGvvK~IIPaVasTNA~IAA~Ca~ 293 (422)
T KOG2015|consen 234 --------------------GVPLDGDDPEHIEWIVERSNERANEFNITGVTRRLVTGVVKRIIPAVASTNAVIAAVCAT 293 (422)
T ss_pred --------------------CCCCCCCCHHHHHHHHHHHHHHhhhcccccchHHhhhhhHHhhcchhhhhhHHHHHHHHH
Confidence 014899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCccccceeeecccccccccccccCCCCCCCCcccCCCccEEEEEcCCCCCHHHHHHHHHHHhcCCCcCeEEe
Q 008516 391 EAIKVLLKDTDKYRMTYCLEHITKKMLLMPVEPYEPNKSCYVCSETPLSLEINTSRSKLRDFVEKIVKAKLGINFPLIMH 470 (563)
Q Consensus 391 E~~K~l~~~~~~~r~~f~~~~~~~~~~~~p~~~~~pn~~C~vC~~~~~~l~i~~~~~TL~~li~~~lk~~~~l~~~~i~~ 470 (563)
|++|++..... +-+.|++..- -...+...-..+..++|.+|+.....+.+.+ ..||++++++ +.+.|+|..|.++.
T Consensus 294 ea~Kl~t~~~~-~~~Nym~~n~-~eG~ytytf~~er~~nC~vCS~~~~~~~isp-t~tl~~vl~~-ls~~~~lk~p~~tt 369 (422)
T KOG2015|consen 294 EALKLLTATDD-PLDNYMNYNA-EEGIYTYTFLLERDKNCPVCSNLVQNYDISP-TVTLEDVLNH-LSKSFQLKSPALTT 369 (422)
T ss_pred HHHHHHHhcch-hhhhheeeec-ccceeEEEeeeccCCCCccccCCCcccccCC-cccHHHHHHH-hhhhhccCCchhhh
Confidence 99999986532 2233443331 1123333334466799999998777777774 8999999999 67899999999865
Q ss_pred c-CeEEEeeCCCchHHHHHHhhhhhhcchhhhcCcccCCCcceeecc
Q 008516 471 G-SNLLYEVGDDLDEVEVANYAANLEKVKIQASSVTLCSSPPDFCCS 516 (563)
Q Consensus 471 g-~~~LY~~~~~~~~~~~~~~~~nl~k~L~el~~gv~~g~~~~~~~~ 516 (563)
- .+.||.++.+ ..++++++||.++|.|| .+|..+.+++-
T Consensus 370 ~~~~~ly~~~~~---~~e~~t~~nl~~~l~~l----~dg~~l~vtd~ 409 (422)
T KOG2015|consen 370 AAGRTLYLSSVP---SIEEATRKNLSQSLKEL----SDGQELVVTDK 409 (422)
T ss_pred hhcceEeecCCc---HHHHHhhhhhhhhHHHh----cCCceEEEecc
Confidence 3 4789998876 55568999999999998 47777766653
No 7
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=100.00 E-value=2.8e-69 Score=536.43 Aligned_cols=233 Identities=50% Similarity=0.828 Sum_probs=223.0
Q ss_pred cEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccCCCC
Q 008516 14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKD 93 (563)
Q Consensus 14 ~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~i~~ 93 (563)
||+|||+||+|||++|+|+++|||+|+|+|+|+|+.|||||||||+++|||++||++++++++++||+++|+++..++.+
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~i~~ 80 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKVGP 80 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEeccCCh
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999854
Q ss_pred -CcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEeccccceeeEEEEeCCCCccccccCCCCCCCCCceeecc
Q 008516 94 -PKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITS 172 (563)
Q Consensus 94 -~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~G~~G~v~v~~~~~t~Cy~C~~~~~~~~~p~cti~~ 172 (563)
..++.+|++++|+|++|+||.++|+++|++|+..++|+|++|+.|+.|++++++|+.++||+|..+++++++|+||+++
T Consensus 81 ~~~~~~~f~~~~DvVi~a~Dn~~aR~~ln~~c~~~~iplI~~g~~G~~G~v~vi~p~~t~c~~C~~~~~~~~~p~Cti~~ 160 (234)
T cd01484 81 EQDFNDTFFEQFHIIVNALDNIIARRYVNGMLIFLIVPLIESGTEGFKGNAQVILPGMTECIECTLYPPQKNFPMCTIAS 160 (234)
T ss_pred hhhchHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcccCCceEEEEEcCCCCCCcccCCCCCCCCCCccccCC
Confidence 3467889999999999999999999999999999999999999999999999999999999999988889999999999
Q ss_pred CCCCchhHHHHHHHHHHHHHhCCCCcccccccCCccccchhhhhhhhhcCCchhHHHHHHHHhhhhhhccHHHHhcCCcc
Q 008516 173 TPSKFVHCIVWAKDLLFAKLFGDKNQENDLNVRSSDASSSAHAEDVFVRRKDEDIDQYGRRIYDHVFGYNIEVASSNEET 252 (563)
Q Consensus 173 ~p~~~~hci~~a~~~lf~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~f~~~F~~~I~~ll~~~~~ 252 (563)
+|+.|+|||+||+++ |
T Consensus 161 ~P~~~~hci~~a~~~-~--------------------------------------------------------------- 176 (234)
T cd01484 161 MPRLPEHCIEWARML-Q--------------------------------------------------------------- 176 (234)
T ss_pred CCCCchHHHHHHHHH-H---------------------------------------------------------------
Confidence 999999999999983 1
Q ss_pred cCCCCCCCccccCCCCCcchhhhcccccccccccchhhhHHhhcCCCCCCCccccccchHHHHHHHHHHHHhhhhccCCc
Q 008516 253 WKNRNRPKPIYSADVMPENLTEQNGNVAKNCVVDTSSVSAMASLGLKNPQDTWTLLESSRIFLEALKLFFAKREKEIGNL 332 (563)
Q Consensus 253 W~~~~~P~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~f~~~~~~l~~~~~~~~~~l 332 (563)
T Consensus 177 -------------------------------------------------------------------------------- 176 (234)
T cd01484 177 -------------------------------------------------------------------------------- 176 (234)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCcHhHHHHHHHHHHHHHHHcCCCCCCHHHHHhhhcccccchhhHHHHHHHHHHHHHH
Q 008516 333 SFDKDDQLAVEFVTAAANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAI 393 (563)
Q Consensus 333 ~FdKDDd~h~dFV~AasNLRA~~f~I~~~s~~~~K~iAGnIIPAIATTnAiVAGl~vlE~~ 393 (563)
| ||+.||+||+++||+||++|+|++.|++++|+||||||||||||||||||++++|++
T Consensus 177 -~--d~~~~~~~i~~~a~~ra~~~~i~~~~~~~~~~i~~~iipai~tTnaiia~~~~~e~~ 234 (234)
T cd01484 177 -W--DDPEHIQFIFQASNERASQYNIRGVTYFLTKGVAGRIIPAVATTNAVVAGVCALEVF 234 (234)
T ss_pred -h--CCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHhcCeecchhhHHHHHHHHHHHhhC
Confidence 1 667799999999999999999999999999999999999999999999999999984
No 8
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=100.00 E-value=2e-68 Score=543.87 Aligned_cols=281 Identities=41% Similarity=0.685 Sum_probs=247.2
Q ss_pred cEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccCCCC
Q 008516 14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKD 93 (563)
Q Consensus 14 ~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~i~~ 93 (563)
||+|||+||+|||++|+|+++|||+|+|+|+|+|+.|||||||||+.+|||++||++|+++++++||+++|+++..++.+
T Consensus 1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~~~i~~ 80 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHFGKIQD 80 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEecccCc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999864
Q ss_pred CcchHhhcccccEEEEccCCHHHHHHHHHHHHhc--------CCCEEEeccccceeeEEEEeCCCCccccccCC--CCCC
Q 008516 94 PKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAA--------DVPLVESGTTGFLGQVTVHVKGKTECYECQPK--PAPK 163 (563)
Q Consensus 94 ~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~--------~~pli~~gt~G~~G~v~v~~~~~t~Cy~C~~~--~~~~ 163 (563)
++.+|+++||+||+|+||.++|+++|+.|... ++|+|++|+.|+.|++++++|+.|+||+|..+ |+++
T Consensus 81 --~~~~f~~~fdvVi~alDn~~aR~~in~~~~~~~~~~~~~~~iPlI~~gt~G~~G~v~vi~P~~t~C~~C~~d~~p~~~ 158 (291)
T cd01488 81 --KDEEFYRQFNIIICGLDSIEARRWINGTLVSLLLYEDPESIIPLIDGGTEGFKGHARVILPGITACIECSLDLFPPQV 158 (291)
T ss_pred --hhHHHhcCCCEEEECCCCHHHHHHHHHHHHHhccccccccCccEEEEEEcccEEEEEEEcCCCCCccccCCCCCCCCC
Confidence 46799999999999999999999999998664 49999999999999999999999999999876 6678
Q ss_pred CCCceeeccCCCCchhHHHHHHHHHHHHHhCCCCcccccccCCccccchhhhhhhhhcCCchhHHHHHHHHhhhhhhccH
Q 008516 164 TYPVCTITSTPSKFVHCIVWAKDLLFAKLFGDKNQENDLNVRSSDASSSAHAEDVFVRRKDEDIDQYGRRIYDHVFGYNI 243 (563)
Q Consensus 164 ~~p~cti~~~p~~~~hci~~a~~~lf~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~f~~~F~~~I 243 (563)
++|+|||+++|+.++|||+||+.++|+
T Consensus 159 ~~p~Cti~~~P~~~~hci~~a~~~~~~----------------------------------------------------- 185 (291)
T cd01488 159 TFPLCTIANTPRLPEHCIEYASLIQWP----------------------------------------------------- 185 (291)
T ss_pred CCCcccccCCCCCcchheeeeeeeecc-----------------------------------------------------
Confidence 999999999999999999999984222
Q ss_pred HHHhcCCcccCCCCCCCccccCCCCCcchhhhcccccccccccchhhhHHhhcCCCCCCCccccccchHHHHHHHHHHHH
Q 008516 244 EVASSNEETWKNRNRPKPIYSADVMPENLTEQNGNVAKNCVVDTSSVSAMASLGLKNPQDTWTLLESSRIFLEALKLFFA 323 (563)
Q Consensus 244 ~~ll~~~~~W~~~~~P~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~f~~~~~~l~~ 323 (563)
..+ |
T Consensus 186 -----------~~~-~---------------------------------------------------------------- 189 (291)
T cd01488 186 -----------KEF-P---------------------------------------------------------------- 189 (291)
T ss_pred -----------ccc-C----------------------------------------------------------------
Confidence 100 0
Q ss_pred hhhhccCCcccCCCcHhHHHHHHHHHHHHHHHcCCCCCCHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHHhcCcccc
Q 008516 324 KREKEIGNLSFDKDDQLAVEFVTAAANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLLKDTDKY 403 (563)
Q Consensus 324 ~~~~~~~~l~FdKDDd~h~dFV~AasNLRA~~f~I~~~s~~~~K~iAGnIIPAIATTnAiVAGl~vlE~~K~l~~~~~~~ 403 (563)
...||+||++||+||+..|+.||.+|||+..+++.+++|+||||||||||||||||+++.|++|++++.....
T Consensus 190 -------~~~~~~d~~~~~~~i~~~a~~ra~~f~i~~~~~~~~~~v~~~iiPai~stnaiia~~~~~~~~k~~~~~~~~~ 262 (291)
T cd01488 190 -------FVPLDGDDPEHIEWLYQKALERAAQFNISGVTYSLTQGVVKRIIPAVASTNAIIAAACCLEALKIATDCYENL 262 (291)
T ss_pred -------CCcCCCCCHHHHHHHHHHHHHHHHHcCCCcccHHHHhhhHheeeCccCchHHHHHHHHHHHHHHHHhccccCC
Confidence 0159999999999999999999999999999999999999999999999999999999999999999865433
Q ss_pred ceeeecccccccccccccCCCCCCCCcccCC
Q 008516 404 RMTYCLEHITKKMLLMPVEPYEPNKSCYVCS 434 (563)
Q Consensus 404 r~~f~~~~~~~~~~~~p~~~~~pn~~C~vC~ 434 (563)
.| |+...... ....-.-..+++|.|.+|+
T Consensus 263 ~n-~~~~~g~~-g~~~~~~~~~~~~~c~~c~ 291 (291)
T cd01488 263 NN-YLMYNGVD-GCYTYTFEHERKEDCPVCS 291 (291)
T ss_pred Cc-eEEEecCC-ceEEEEEEEeeCCCCCCCC
Confidence 22 33222111 2333334457799999996
No 9
>PRK08223 hypothetical protein; Validated
Probab=100.00 E-value=7.4e-36 Score=303.02 Aligned_cols=156 Identities=27% Similarity=0.419 Sum_probs=148.4
Q ss_pred CCHHHHHHHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 008516 2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ 81 (563)
Q Consensus 2 ~~~~~q~kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~ 81 (563)
+++++|++|++++|+||||||+||+++++|+++|||+|+|+|.|+||.||||||++|+.+|||++|+++++++++++||.
T Consensus 17 iG~e~Q~kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~ 96 (287)
T PRK08223 17 ITPTEQQRLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPE 96 (287)
T ss_pred cCHHHHHHHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEeccCCCCCcchHhhcccccEEEEccCCH--HHHHHHHHHHHhcCCCEEEeccccceeeEEEEeCCCCccccccCC
Q 008516 82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNL--DARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPK 159 (563)
Q Consensus 82 v~I~~~~~~i~~~~~~~~~~~~~dvVi~alDn~--~ar~~in~~c~~~~~pli~~gt~G~~G~v~v~~~~~t~Cy~C~~~ 159 (563)
++|+++...+++++ ..++++++|+||+|+||+ ++|.++|+.|+.+++|+|.+++.|+.|++.++.|+ ++||+|..+
T Consensus 97 v~V~~~~~~l~~~n-~~~ll~~~DlVvD~~D~~~~~~r~~ln~~c~~~~iP~V~~~~~g~~gqv~v~~p~-~p~~~~~f~ 174 (287)
T PRK08223 97 LEIRAFPEGIGKEN-ADAFLDGVDVYVDGLDFFEFDARRLVFAACQQRGIPALTAAPLGMGTALLVFDPG-GMSFDDYFD 174 (287)
T ss_pred CEEEEEecccCccC-HHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHcCCCEEEEeccCCeEEEEEEcCC-CCchhhhcC
Confidence 99999999997654 468899999999999986 89999999999999999999999999999999885 899999854
No 10
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=100.00 E-value=6.9e-36 Score=292.08 Aligned_cols=170 Identities=30% Similarity=0.521 Sum_probs=158.0
Q ss_pred CCHHHHHHHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 008516 2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ 81 (563)
Q Consensus 2 ~~~~~q~kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~ 81 (563)
++++.|++|++++|+|+|+||+|++++++|+++|+++|+++|.|.|+.+||+|||||+++|+|++||++++++++++||+
T Consensus 11 ~g~~~q~kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~ 90 (202)
T TIGR02356 11 IGEEGQQRLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSD 90 (202)
T ss_pred cCHHHHHHhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEeccCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEeccccceeeEEEEeCC-CCccccccCCC
Q 008516 82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKG-KTECYECQPKP 160 (563)
Q Consensus 82 v~I~~~~~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~G~~G~v~v~~~~-~t~Cy~C~~~~ 160 (563)
++++++...+++.. ..++++++|+||+|+||.++|.++|++|+++++|+|.+++.|+.|++.++.|+ .++||+|..+.
T Consensus 91 v~i~~~~~~i~~~~-~~~~~~~~D~Vi~~~d~~~~r~~l~~~~~~~~ip~i~~~~~g~~G~~~~~~p~~~~~c~~c~~~~ 169 (202)
T TIGR02356 91 IQVTALKERVTAEN-LELLINNVDLVLDCTDNFATRYLINDACVALGTPLISAAVVGFGGQLMVFDPGGEGPCLRCLFPD 169 (202)
T ss_pred CEEEEehhcCCHHH-HHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEeccCeEEEEEEeCCCCCCChhhcCCC
Confidence 99999998886532 35688999999999999999999999999999999999999999999999988 79999999876
Q ss_pred CCCCCCceeecc
Q 008516 161 APKTYPVCTITS 172 (563)
Q Consensus 161 ~~~~~p~cti~~ 172 (563)
.+...|.|+...
T Consensus 170 ~~~~~~~~~~~~ 181 (202)
T TIGR02356 170 IADTGPSCATAG 181 (202)
T ss_pred CcccCCCCccCC
Confidence 555667786554
No 11
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=100.00 E-value=8.4e-36 Score=303.96 Aligned_cols=178 Identities=20% Similarity=0.456 Sum_probs=163.9
Q ss_pred CCHHHHHHHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 008516 2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ 81 (563)
Q Consensus 2 ~~~~~q~kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~ 81 (563)
+++++|+||++++|+|+|+||+|+|++|||+++|||+|+|+|.|.|+.+||+|||+|+++|||++||++++++++++||.
T Consensus 9 ~G~eaq~kL~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eLNp~ 88 (286)
T cd01491 9 LGHEAMKKLQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELNPY 88 (286)
T ss_pred cCHHHHHHHhcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHHHCCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEeccCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEeccccceeeEEEEeCCCCccccccCCCC
Q 008516 82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPA 161 (563)
Q Consensus 82 v~I~~~~~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~G~~G~v~v~~~~~t~Cy~C~~~~~ 161 (563)
++|+++...+ +.+++++||+||++.|+.++|.++|++|+++++|+|.+++.|+.|++++.++....|+++ +.++
T Consensus 89 V~V~~~~~~~-----~~~~l~~fdvVV~~~~~~~~~~~in~~c~~~~ipfI~a~~~G~~G~vf~dfg~~f~~~d~-~ge~ 162 (286)
T cd01491 89 VPVTVSTGPL-----TTDELLKFQVVVLTDASLEDQLKINEFCHSPGIKFISADTRGLFGSIFCDFGDEFTVYDP-NGEE 162 (286)
T ss_pred CEEEEEeccC-----CHHHHhcCCEEEEecCCHHHHHHHHHHHHHcCCEEEEEeccccEEEEEecCCCeEEEeCC-CCCc
Confidence 9999998764 457899999999999999999999999999999999999999999999987755555542 2467
Q ss_pred CCCCCceeeccCCCCchhHHHHHH
Q 008516 162 PKTYPVCTITSTPSKFVHCIVWAK 185 (563)
Q Consensus 162 ~~~~p~cti~~~p~~~~hci~~a~ 185 (563)
|+++++|+|.+.+...+||+.-.+
T Consensus 163 p~~~~i~~I~~~~~g~V~~~~~~~ 186 (286)
T cd01491 163 PKSGMISSISKDNPGVVTCLDETR 186 (286)
T ss_pred CCccceeeeecCCceEEEEECCcc
Confidence 899999999999999999975443
No 12
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=100.00 E-value=1.2e-34 Score=288.56 Aligned_cols=159 Identities=35% Similarity=0.594 Sum_probs=150.3
Q ss_pred CCHHHHHHHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 008516 2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ 81 (563)
Q Consensus 2 ~~~~~q~kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~ 81 (563)
++++.|++|++++|+|+|+||+||+++++|+++|||+|+|+|.|.|+.+||+|||||+++|+|++||++++++++++||+
T Consensus 11 ~g~~~q~~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~ 90 (228)
T cd00757 11 IGEEGQEKLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPD 90 (228)
T ss_pred cCHHHHHHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEeccCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEeccccceeeEEEEeCCCCccccccCCCC
Q 008516 82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPA 161 (563)
Q Consensus 82 v~I~~~~~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~G~~G~v~v~~~~~t~Cy~C~~~~~ 161 (563)
++|+.+...++.. ...++++++|+||+|+||.++|.++++.|+++++|+|++|+.|+.|++.++.|+.++||.|.....
T Consensus 91 ~~i~~~~~~i~~~-~~~~~~~~~DvVi~~~d~~~~r~~l~~~~~~~~ip~i~~g~~g~~g~v~~~~p~~~~c~~c~~~~~ 169 (228)
T cd00757 91 VEIEAYNERLDAE-NAEELIAGYDLVLDCTDNFATRYLINDACVKLGKPLVSGAVLGFEGQVTVFIPGEGPCYRCLFPEP 169 (228)
T ss_pred CEEEEecceeCHH-HHHHHHhCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEeccCEEEEEEECCCCCCCccccCCCC
Confidence 9999999888543 235788999999999999999999999999999999999999999999999999999999986543
No 13
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=100.00 E-value=6.9e-35 Score=292.99 Aligned_cols=160 Identities=34% Similarity=0.590 Sum_probs=149.8
Q ss_pred CCHHHHHHHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 008516 2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ 81 (563)
Q Consensus 2 ~~~~~q~kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~ 81 (563)
+++++|++|++++|+|+|+||+||+++++|+++|||+|+|+|.|+|+.|||+||+||+++|||++|+++++++++++||+
T Consensus 22 ~g~~~Q~~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~ 101 (245)
T PRK05690 22 FDFDGQEKLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPH 101 (245)
T ss_pred cCHHHHHHhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEeccCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEeccccceeeEEEEeCCC-CccccccCCC
Q 008516 82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGK-TECYECQPKP 160 (563)
Q Consensus 82 v~I~~~~~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~G~~G~v~v~~~~~-t~Cy~C~~~~ 160 (563)
++|+++...+++.. ..++++++|+||+|+||.++|.++|++|+++++|+|.+++.|+.|++.++.|+. ++||+|....
T Consensus 102 v~i~~~~~~i~~~~-~~~~~~~~DiVi~~~D~~~~r~~ln~~~~~~~ip~v~~~~~g~~G~v~~~~~~~~~~c~~c~~~~ 180 (245)
T PRK05690 102 IAIETINARLDDDE-LAALIAGHDLVLDCTDNVATRNQLNRACFAAKKPLVSGAAIRMEGQVTVFTYQDDEPCYRCLSRL 180 (245)
T ss_pred CEEEEEeccCCHHH-HHHHHhcCCEEEecCCCHHHHHHHHHHHHHhCCEEEEeeeccCCceEEEEecCCCCceeeeccCC
Confidence 99999998886532 357899999999999999999999999999999999999999999999998765 8999998654
Q ss_pred CC
Q 008516 161 AP 162 (563)
Q Consensus 161 ~~ 162 (563)
.+
T Consensus 181 ~~ 182 (245)
T PRK05690 181 FG 182 (245)
T ss_pred CC
Confidence 33
No 14
>PRK07411 hypothetical protein; Validated
Probab=100.00 E-value=1.2e-34 Score=309.46 Aligned_cols=170 Identities=29% Similarity=0.465 Sum_probs=156.7
Q ss_pred CCHHHHHHHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 008516 2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ 81 (563)
Q Consensus 2 ~~~~~q~kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~ 81 (563)
+++++|++|++++|+||||||+||+++++|+++|||+|+|+|.|+|+.|||+|||||+.+|||++||++++++++++||.
T Consensus 28 ~g~~~q~~L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~ 107 (390)
T PRK07411 28 VGLEGQKRLKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPY 107 (390)
T ss_pred cCHHHHHHHhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCC
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEeccCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEeccccceeeEEEEeCCCCccccccCCC-
Q 008516 82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKP- 160 (563)
Q Consensus 82 v~I~~~~~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~G~~G~v~v~~~~~t~Cy~C~~~~- 160 (563)
++|+++..+++.. ...++++++|+||+|+||.++|.++|++|+..++|+|.+++.|+.|++.++.++.++||+|..+.
T Consensus 108 v~v~~~~~~~~~~-~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~~~~~~p~v~~~~~g~~g~~~v~~~~~~~c~~c~~~~~ 186 (390)
T PRK07411 108 CQVDLYETRLSSE-NALDILAPYDVVVDGTDNFPTRYLVNDACVLLNKPNVYGSIFRFEGQATVFNYEGGPNYRDLYPEP 186 (390)
T ss_pred CeEEEEecccCHH-hHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEEccCEEEEEEECCCCCCChHHhcCCC
Confidence 9999999988754 34678999999999999999999999999999999999999999999999887889999999652
Q ss_pred -CCCCCCceeecc
Q 008516 161 -APKTYPVCTITS 172 (563)
Q Consensus 161 -~~~~~p~cti~~ 172 (563)
++...|.|....
T Consensus 187 ~~~~~~~~c~~~g 199 (390)
T PRK07411 187 PPPGMVPSCAEGG 199 (390)
T ss_pred CCcccCCCCccCC
Confidence 334567777543
No 15
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=100.00 E-value=3.3e-34 Score=302.57 Aligned_cols=191 Identities=29% Similarity=0.432 Sum_probs=165.3
Q ss_pred CCHHHHHHHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 008516 2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ 81 (563)
Q Consensus 2 ~~~~~q~kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~ 81 (563)
+++++|++|++++|+|+|+||+||+++++|+++|||+|+|+|.|+|+.|||+|||||+++|+|++||++++++++++||.
T Consensus 18 ~g~~~q~~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~ 97 (355)
T PRK05597 18 IGQQGQQSLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPD 97 (355)
T ss_pred cCHHHHHHHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCC
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEeccCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEeccccceeeEEEEeCCCCccccccCCC-
Q 008516 82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKP- 160 (563)
Q Consensus 82 v~I~~~~~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~G~~G~v~v~~~~~t~Cy~C~~~~- 160 (563)
++|+++...++.. ...++++++|+||+|+||.++|..+|+.|+++++|+|.+++.|+.|++.++.|+.++||+|..+.
T Consensus 98 v~v~~~~~~i~~~-~~~~~~~~~DvVvd~~d~~~~r~~~n~~c~~~~ip~v~~~~~g~~g~v~~~~~~~~~~~~~~~~~~ 176 (355)
T PRK05597 98 VKVTVSVRRLTWS-NALDELRDADVILDGSDNFDTRHLASWAAARLGIPHVWASILGFDAQLSVFHAGHGPIYEDLFPTP 176 (355)
T ss_pred cEEEEEEeecCHH-HHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEEecCeEEEEEEcCCCCCCHHHhCCCC
Confidence 9999999888643 23578999999999999999999999999999999999999999999999988899999998643
Q ss_pred -CCCCCCceeeccCCCC--chhHHHHHHHHHHHHHhC
Q 008516 161 -APKTYPVCTITSTPSK--FVHCIVWAKDLLFAKLFG 194 (563)
Q Consensus 161 -~~~~~p~cti~~~p~~--~~hci~~a~~~lf~~lf~ 194 (563)
++...|.|+....... ......-|.+ ..+.+.|
T Consensus 177 ~~~~~~~~c~~~gv~g~~~~~~g~~~a~e-~ik~l~g 212 (355)
T PRK05597 177 PPPGSVPSCSQAGVLGPVVGVVGSAMAME-ALKLITG 212 (355)
T ss_pred CCccCCCCccccCcchhHHHHHHHHHHHH-HHHHHhC
Confidence 3346778875544321 1222223445 4555555
No 16
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=100.00 E-value=7.1e-34 Score=284.65 Aligned_cols=157 Identities=34% Similarity=0.647 Sum_probs=146.6
Q ss_pred CCHHHHHHHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 008516 2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ 81 (563)
Q Consensus 2 ~~~~~q~kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~ 81 (563)
+++++|++|++++|+|+|+||+|++++++|+++|||+|+|+|.|.|+.|||+||+||.++|||++||++++++++++||+
T Consensus 14 ~g~~~q~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~ 93 (240)
T TIGR02355 14 FDFDGQEALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPH 93 (240)
T ss_pred CCHHHHHHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEeccCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEeccccceeeEEEEe-CCCCccccccCC
Q 008516 82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHV-KGKTECYECQPK 159 (563)
Q Consensus 82 v~I~~~~~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~G~~G~v~v~~-~~~t~Cy~C~~~ 159 (563)
++|+++...+++. ...++++++|+||+|+||.++|.++|++|+++++|+|.+++.|+.|++.++. +..++||+|...
T Consensus 94 v~i~~~~~~i~~~-~~~~~~~~~DlVvd~~D~~~~r~~ln~~~~~~~ip~v~~~~~g~~G~v~~~~~~~~~~c~~C~~~ 171 (240)
T TIGR02355 94 IAINPINAKLDDA-ELAALIAEHDIVVDCTDNVEVRNQLNRQCFAAKVPLVSGAAIRMEGQVSVFTYQDGEPCYRCLSR 171 (240)
T ss_pred cEEEEEeccCCHH-HHHHHhhcCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEecccEeEEEEEecCCCCCccccccc
Confidence 9999999888653 2457899999999999999999999999999999999999999999998765 556899999854
No 17
>PRK08328 hypothetical protein; Provisional
Probab=100.00 E-value=5.6e-34 Score=284.09 Aligned_cols=158 Identities=31% Similarity=0.434 Sum_probs=149.6
Q ss_pred CCHHHHHHHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCc-hHHHHHHHHHHhhCC
Q 008516 2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQ-SKAKVARDAVLKFRP 80 (563)
Q Consensus 2 ~~~~~q~kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk-~Ka~va~~~l~~~np 80 (563)
+++++|++|++++|+|+|+||+||+++++|+++|||+|+|+|.|.|+.|||+||++|+++|+|+ +|+++++++++++||
T Consensus 17 ~g~~~q~~L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~np 96 (231)
T PRK08328 17 FGVEGQEKLKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERFNS 96 (231)
T ss_pred cCHHHHHHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHhCC
Confidence 6789999999999999999999999999999999999999999999999999999999999999 699999999999999
Q ss_pred CceEEEeccCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEeccccceeeEEEEeCCCCccccccCCC
Q 008516 81 QMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKP 160 (563)
Q Consensus 81 ~v~I~~~~~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~G~~G~v~v~~~~~t~Cy~C~~~~ 160 (563)
+++|+++...+++.. ..++++++|+||+|+||.++|..++++|+++++|+|.+++.|+.|++.++.|+.++||+|..+.
T Consensus 97 ~v~v~~~~~~~~~~~-~~~~l~~~D~Vid~~d~~~~r~~l~~~~~~~~ip~i~g~~~g~~G~v~~~~p~~~~c~~~~~~~ 175 (231)
T PRK08328 97 DIKIETFVGRLSEEN-IDEVLKGVDVIVDCLDNFETRYLLDDYAHKKGIPLVHGAVEGTYGQVTTIVPGKTKRLREIFPK 175 (231)
T ss_pred CCEEEEEeccCCHHH-HHHHHhcCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEeeccCEEEEEEECCCCCCCHHHhCCC
Confidence 999999998886543 3568999999999999999999999999999999999999999999999999999999998654
No 18
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=100.00 E-value=2.1e-33 Score=300.28 Aligned_cols=169 Identities=33% Similarity=0.525 Sum_probs=154.3
Q ss_pred CCHHHHHHHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 008516 2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ 81 (563)
Q Consensus 2 ~~~~~q~kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~ 81 (563)
+++++|++|++++|+|||+||+||+++++|+++|||+|+|+|.|+|+.|||+|||||+.+|||++||++++++++++||+
T Consensus 32 ~g~~~q~~L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~ 111 (392)
T PRK07878 32 VGVDGQKRLKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEINPL 111 (392)
T ss_pred cCHHHHHHHhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHhCCC
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEeccCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEeccccceeeEEEEeC----CCCcccccc
Q 008516 82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVK----GKTECYECQ 157 (563)
Q Consensus 82 v~I~~~~~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~G~~G~v~v~~~----~~t~Cy~C~ 157 (563)
++|+++..+++.. ...++++++|+||+|+||.++|.++|++|+.+++|+|.+++.|+.|++.++.+ +.++||+|.
T Consensus 112 v~i~~~~~~i~~~-~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~~~~~~p~v~~~~~g~~G~v~~~~~~~~~~~~~c~~c~ 190 (392)
T PRK07878 112 VNVRLHEFRLDPS-NAVELFSQYDLILDGTDNFATRYLVNDAAVLAGKPYVWGSIYRFEGQASVFWEDAPDGLGLNYRDL 190 (392)
T ss_pred cEEEEEeccCChh-HHHHHHhcCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEeccCEEEEEEEecCCCCCCCCeeeee
Confidence 9999999888654 34678999999999999999999999999999999999999999999998864 378999998
Q ss_pred CCCC--CCCCCceeec
Q 008516 158 PKPA--PKTYPVCTIT 171 (563)
Q Consensus 158 ~~~~--~~~~p~cti~ 171 (563)
.+.. +...|.|.-.
T Consensus 191 ~~~~~~~~~~~~~~~~ 206 (392)
T PRK07878 191 YPEPPPPGMVPSCAEG 206 (392)
T ss_pred cCCCCCccCCCCCccC
Confidence 6533 3445677543
No 19
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=100.00 E-value=5.7e-33 Score=270.38 Aligned_cols=144 Identities=26% Similarity=0.491 Sum_probs=137.6
Q ss_pred CCHHHHHHHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 008516 2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ 81 (563)
Q Consensus 2 ~~~~~q~kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~ 81 (563)
+++++|++|++++|+|+|+||+|||++|+|+++|||+|+++|.|.|+.+||+|||||+.+|+|++||++++++++++||+
T Consensus 11 ~G~e~Q~~L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~ 90 (197)
T cd01492 11 WGLEAQKRLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPR 90 (197)
T ss_pred hCHHHHHHHHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEeccCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEeccccceeeEEEEe
Q 008516 82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHV 147 (563)
Q Consensus 82 v~I~~~~~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~G~~G~v~v~~ 147 (563)
++|+++...+++ ...++++++|+||++.|+.++|.++|+.|+++++|+|.+++.|+.|++++.+
T Consensus 91 v~i~~~~~~~~~--~~~~~~~~~dvVi~~~~~~~~~~~ln~~c~~~~ip~i~~~~~G~~G~v~~d~ 154 (197)
T cd01492 91 VKVSVDTDDISE--KPEEFFSQFDVVVATELSRAELVKINELCRKLGVKFYATGVHGLFGFVFADL 154 (197)
T ss_pred CEEEEEecCccc--cHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEecCCEEEEEEec
Confidence 999999988863 3578999999999999999999999999999999999999999999998653
No 20
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=100.00 E-value=1.2e-32 Score=288.67 Aligned_cols=158 Identities=28% Similarity=0.458 Sum_probs=149.1
Q ss_pred CCHHHHHHHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCC--chHHHHHHHHHHhhC
Q 008516 2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVG--QSKAKVARDAVLKFR 79 (563)
Q Consensus 2 ~~~~~q~kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diG--k~Ka~va~~~l~~~n 79 (563)
+++++|++|++++|+|||+||+|++++++|+++|||+|+|+|.|.||.|||+||+||+++|+| ++||++++++++++|
T Consensus 14 ~G~~~Q~~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~in 93 (338)
T PRK12475 14 IGEEGQRKIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKIN 93 (338)
T ss_pred cCHHHHHhhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHC
Confidence 589999999999999999999999999999999999999999999999999999999999985 899999999999999
Q ss_pred CCceEEEeccCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEeccccceeeEEEEeCCCCccccccCC
Q 008516 80 PQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPK 159 (563)
Q Consensus 80 p~v~I~~~~~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~G~~G~v~v~~~~~t~Cy~C~~~ 159 (563)
|+++|+++..+++.. ...++++++|+||+|+||.++|..+|++|+++++|+|.+++.|+.|++.++.|+.++||+|..+
T Consensus 94 p~v~i~~~~~~~~~~-~~~~~~~~~DlVid~~D~~~~r~~in~~~~~~~ip~i~~~~~g~~G~~~~~~P~~tpC~~Cl~~ 172 (338)
T PRK12475 94 SEVEIVPVVTDVTVE-ELEELVKEVDLIIDATDNFDTRLLINDLSQKYNIPWIYGGCVGSYGVTYTIIPGKTPCLRCLME 172 (338)
T ss_pred CCcEEEEEeccCCHH-HHHHHhcCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEecccEEEEEEECCCCCCCHHHhcC
Confidence 999999998887643 2356789999999999999999999999999999999999999999999999999999999964
Q ss_pred C
Q 008516 160 P 160 (563)
Q Consensus 160 ~ 160 (563)
.
T Consensus 173 ~ 173 (338)
T PRK12475 173 H 173 (338)
T ss_pred C
Confidence 3
No 21
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=100.00 E-value=1.8e-32 Score=267.11 Aligned_cols=146 Identities=23% Similarity=0.489 Sum_probs=137.6
Q ss_pred CCHHHHHHHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCC--CCCCchHHHHHHHHHHhhC
Q 008516 2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQ--SHVGQSKAKVARDAVLKFR 79 (563)
Q Consensus 2 ~~~~~q~kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~--~diGk~Ka~va~~~l~~~n 79 (563)
+++++|++|++++|+|+|+||+|||++|||+++|||+|+++|.|.|+.+||+|||||++ +|+|++||++++++++++|
T Consensus 9 ~G~~~q~~L~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~lN 88 (198)
T cd01485 9 WGDEAQNKLRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQELN 88 (198)
T ss_pred cCHHHHHHHhhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHHHC
Confidence 68999999999999999999999999999999999999999999999999999999998 8999999999999999999
Q ss_pred CCceEEEeccCCCC-CcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEeccccceeeEEEEe
Q 008516 80 PQMSITAHHANVKD-PKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHV 147 (563)
Q Consensus 80 p~v~I~~~~~~i~~-~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~G~~G~v~v~~ 147 (563)
|+++|+++...+.+ .....++++++|+||+|.|+.++|.++|++|+++++|+|.+++.|+.|++++..
T Consensus 89 p~v~i~~~~~~~~~~~~~~~~~~~~~dvVi~~~d~~~~~~~ln~~c~~~~ip~i~~~~~G~~G~v~~~~ 157 (198)
T cd01485 89 PNVKLSIVEEDSLSNDSNIEEYLQKFTLVIATEENYERTAKVNDVCRKHHIPFISCATYGLIGYAFFDF 157 (198)
T ss_pred CCCEEEEEecccccchhhHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEeecCEEEEEEch
Confidence 99999999887742 234578999999999999999999999999999999999999999999998653
No 22
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=100.00 E-value=1.6e-32 Score=290.70 Aligned_cols=169 Identities=30% Similarity=0.504 Sum_probs=153.8
Q ss_pred CCHHHHHHHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 008516 2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ 81 (563)
Q Consensus 2 ~~~~~q~kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~ 81 (563)
+++++|++|++++|+|+|+||+|++++++|+++|+|+|+|+|.|.|+.|||+||+||+++|||++||++++++++++||+
T Consensus 31 ~g~~~q~~l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~ 110 (370)
T PRK05600 31 FGIEQQERLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPD 110 (370)
T ss_pred hCHHHHHHhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEeccCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEeccccceeeEEEEeCC---CCccccccC
Q 008516 82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKG---KTECYECQP 158 (563)
Q Consensus 82 v~I~~~~~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~G~~G~v~v~~~~---~t~Cy~C~~ 158 (563)
++|+++...+++.. ..++++++|+||+|+||.++|.++|+.|+.+++|+|.+++.|+.|++.++.++ .++||+|..
T Consensus 111 v~i~~~~~~i~~~~-~~~~~~~~DlVid~~Dn~~~r~~in~~~~~~~iP~v~~~~~g~~G~v~v~~~~~~~~~~~~~~l~ 189 (370)
T PRK05600 111 IRVNALRERLTAEN-AVELLNGVDLVLDGSDSFATKFLVADAAEITGTPLVWGTVLRFHGELAVFNSGPDHRGVGLRDLF 189 (370)
T ss_pred CeeEEeeeecCHHH-HHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEEecCEEEEEEEecCCCCCCCCcHhhC
Confidence 99999999886443 45789999999999999999999999999999999999999999999998765 378999996
Q ss_pred CCC--CCCCCceeec
Q 008516 159 KPA--PKTYPVCTIT 171 (563)
Q Consensus 159 ~~~--~~~~p~cti~ 171 (563)
+.. ....|.|...
T Consensus 190 ~~~~~~~~~~~c~~~ 204 (370)
T PRK05600 190 PEQPSGDSIPDCATA 204 (370)
T ss_pred CCCCccccCCCCccC
Confidence 532 2345667433
No 23
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=100.00 E-value=2.4e-32 Score=286.37 Aligned_cols=160 Identities=26% Similarity=0.435 Sum_probs=149.7
Q ss_pred CCHHHHHHHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCC--chHHHHHHHHHHhhC
Q 008516 2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVG--QSKAKVARDAVLKFR 79 (563)
Q Consensus 2 ~~~~~q~kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diG--k~Ka~va~~~l~~~n 79 (563)
+++++|++|++++|+||||||+||+++++|+++|||+|+|+|.|.|+.|||+||+||+++|+| ++|+++++++++++|
T Consensus 14 ~G~~~Q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~in 93 (339)
T PRK07688 14 IGEEGQQKLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEIN 93 (339)
T ss_pred cCHHHHHHhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHC
Confidence 689999999999999999999999999999999999999999999999999999999999995 599999999999999
Q ss_pred CCceEEEeccCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEeccccceeeEEEEeCCCCccccccCC
Q 008516 80 PQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPK 159 (563)
Q Consensus 80 p~v~I~~~~~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~G~~G~v~v~~~~~t~Cy~C~~~ 159 (563)
|.++|+++..++++.. ..++++++|+||+|+||.++|.++|+.|+++++|+|.+++.|+.|++.++.|+.++||+|...
T Consensus 94 p~v~v~~~~~~~~~~~-~~~~~~~~DlVid~~Dn~~~r~~ln~~~~~~~iP~i~~~~~g~~G~~~~~~p~~~pC~~Cl~~ 172 (339)
T PRK07688 94 SDVRVEAIVQDVTAEE-LEELVTGVDLIIDATDNFETRFIVNDAAQKYGIPWIYGACVGSYGLSYTIIPGKTPCLRCLLQ 172 (339)
T ss_pred CCcEEEEEeccCCHHH-HHHHHcCCCEEEEcCCCHHHHHHHHHHHHHhCCCEEEEeeeeeeeEEEEECCCCCCCeEeecC
Confidence 9999999998886543 356789999999999999999999999999999999999999999999999999999999865
Q ss_pred CCC
Q 008516 160 PAP 162 (563)
Q Consensus 160 ~~~ 162 (563)
..+
T Consensus 173 ~~~ 175 (339)
T PRK07688 173 SIP 175 (339)
T ss_pred CCC
Confidence 433
No 24
>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]
Probab=99.98 E-value=1.1e-31 Score=271.34 Aligned_cols=160 Identities=41% Similarity=0.709 Sum_probs=151.6
Q ss_pred CHHHHHHHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCc
Q 008516 3 SERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQM 82 (563)
Q Consensus 3 ~~~~q~kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v 82 (563)
+.++|++|+++||+|+|+||+||+++++|+++|+|+++|+|.|+|+.|||+||++|+..|+|++|++++++.++++||.+
T Consensus 21 ~~~~q~~l~~s~vlvvG~GglG~~~~~~la~aGvg~l~i~D~d~v~~snL~rq~~~~~~dig~~Ka~~a~~~l~~ln~~v 100 (254)
T COG0476 21 GGEGQQKLKDSRVLVVGAGGLGSPAAKYLALAGVGKLTIVDFDTVELSNLQRQFLFTEADVGKPKAEVAAKALRKLNPLV 100 (254)
T ss_pred CHHHHHHHhhCCEEEEecChhHHHHHHHHHHcCCCeEEEEcCCcccccccCceeeecccccCCcHHHHHHHHHHHhCCCC
Confidence 45669999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEeccCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEeccccceeeEEEEeCC-CCccccccCCCC
Q 008516 83 SITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKG-KTECYECQPKPA 161 (563)
Q Consensus 83 ~I~~~~~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~G~~G~v~v~~~~-~t~Cy~C~~~~~ 161 (563)
+++++...++.... .++++++|+|++++||.++|..+|+.|+..++|++++++.|+.|++.++.|+ .++||+|..+..
T Consensus 101 ~v~~~~~~l~~~~~-~~~~~~~d~v~d~~dn~~~r~~iN~~~~~~~~pli~~~~~~~~g~~~~~~~~~~~~c~~~~~~~~ 179 (254)
T COG0476 101 EVVAYLERLDEENA-EELIAQFDVVLDCTDNFETRYLINDACVKLGIPLVHGGAIGFEGQVTVIIPGDKTPCYRCLFPEK 179 (254)
T ss_pred eEEEeecccChhhH-HHHhccCCEEEECCCCHHHHHHHHHHHHHhCCCeEeeeeccceEEEEEEecCCCCCcccccCCCC
Confidence 99999999876655 7899999999999999999999999999999999999999999999999999 599999997654
Q ss_pred CC
Q 008516 162 PK 163 (563)
Q Consensus 162 ~~ 163 (563)
+.
T Consensus 180 ~~ 181 (254)
T COG0476 180 PP 181 (254)
T ss_pred CC
Confidence 43
No 25
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=99.97 E-value=4.4e-31 Score=289.60 Aligned_cols=191 Identities=27% Similarity=0.391 Sum_probs=161.2
Q ss_pred CCCHHHHHHHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCC---CchHHHHHHHHHHh
Q 008516 1 MVSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHV---GQSKAKVARDAVLK 77 (563)
Q Consensus 1 ~~~~~~q~kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~di---Gk~Ka~va~~~l~~ 77 (563)
++|+-+.++|+++||+||||||+||+++++|+++|||+|++||.|+|+.|||+||+||+.+|+ |++||++|++++++
T Consensus 327 llP~l~~ekL~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D~Ve~SNL~RQ~Lf~~~Dv~~~Gk~KA~aAa~~Lk~ 406 (664)
T TIGR01381 327 LHPDLQLERYSQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNGKVSYSNPVRQSLSNFEDCLLGGRGKAETAQKALKR 406 (664)
T ss_pred cCChhhHHHHhcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEECCCccccccccchhhhhhcCCcHHHHHHHHHHH
Confidence 478888999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred hCCCceEEEeccCC-------CCC---------cchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEecccccee
Q 008516 78 FRPQMSITAHHANV-------KDP---------KFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLG 141 (563)
Q Consensus 78 ~np~v~I~~~~~~i-------~~~---------~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~G~~G 141 (563)
+||+++|+++..++ ++. ..-.++++++|+|++|+||.++|..++.+|..+++|+|+++ .|+.|
T Consensus 407 InP~v~i~~~~~~Ipm~Gh~i~~~~~~~~~~d~~~l~~Li~~~DvV~d~tDn~esR~L~n~~c~~~~kplI~aA-lGfdg 485 (664)
T TIGR01381 407 IFPSIQATGHRLTVPMPGHPIDEKDVPELEKDIARLEQLIKDHDVVFLLLDSREARWLPTVLCSRHKKIAISAA-LGFDS 485 (664)
T ss_pred HCCCcEEEEeeeeeccccccCCchhhhhccccHHHHHHHHhhCCEEEECCCCHHHHHHHHHHHHHhCCCEEEEE-eccce
Confidence 99999999998774 221 11246889999999999999999999999999999999985 89999
Q ss_pred eEEEEeC------------------CCCccccccC---CCCCCCC----CceeeccCCCCchhHHHHHHHHHHHHHhC
Q 008516 142 QVTVHVK------------------GKTECYECQP---KPAPKTY----PVCTITSTPSKFVHCIVWAKDLLFAKLFG 194 (563)
Q Consensus 142 ~v~v~~~------------------~~t~Cy~C~~---~~~~~~~----p~cti~~~p~~~~hci~~a~~~lf~~lf~ 194 (563)
++.+..+ ...+||.|.. +..+... +.||+.. |......-..|.| ++..+..
T Consensus 486 ~lvmrhG~~~~~~~~~~~~~~~~~~~~~gCYfC~Dv~aP~~s~~~rtlDqqCtVtr-Pgv~~ias~~AvE-ll~~llq 561 (664)
T TIGR01381 486 YVVMRHGIGRSESVSDVSSSDSVPYSRLGCYFCNDVTAPGDSTTDRTLDQQCTVTR-PGTAMIASGLAVE-LLVSVLQ 561 (664)
T ss_pred EEEEEecccccccccccccccccCCCCCCccccCCCCCCCcccccccccccceEec-chHHHHHHHHHHH-HHHHHhc
Confidence 9988622 2588999993 2222233 6899654 5544445567788 4555544
No 26
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=99.97 E-value=5.2e-30 Score=274.82 Aligned_cols=158 Identities=23% Similarity=0.391 Sum_probs=146.0
Q ss_pred CCHHHHHHHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 008516 2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ 81 (563)
Q Consensus 2 ~~~~~q~kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~ 81 (563)
.++++|++|++++|+|||+||+|||++|||+++|||+|+|+|.|.|+.+||+|||+++.+|+|++||+++++.++++||+
T Consensus 10 wG~~gQ~~L~~s~VlliG~gglGsEilKNLvL~GIg~~tIvD~~~V~~sDL~~nFfl~~~diGk~kA~~~~~~L~eLNp~ 89 (425)
T cd01493 10 WGEHGQAALESAHVCLLNATATGTEILKNLVLPGIGSFTIVDGSKVDEEDLGNNFFLDASSLGKSRAEATCELLQELNPD 89 (425)
T ss_pred hHHHHHHHHhhCeEEEEcCcHHHHHHHHHHHHcCCCeEEEECCCcCchhhccccccCChhhcCcHHHHHHHHHHHHHCCC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEeccCCCCC-cchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEeccccceeeEEEEeCCCCccccccCCC
Q 008516 82 MSITAHHANVKDP-KFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKP 160 (563)
Q Consensus 82 v~I~~~~~~i~~~-~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~G~~G~v~v~~~~~t~Cy~C~~~~ 160 (563)
++++.+...+.+. ..+.+||++||+||.+.++...+..++++|+..++|+|.+++.|+.|++++..+. +.+.++.+++
T Consensus 90 V~i~~~~e~~~~ll~~~~~f~~~fdiVI~t~~~~~~~~~L~~~c~~~~iPlI~~~s~G~~G~v~v~~~~-h~i~et~p~~ 168 (425)
T cd01493 90 VNGSAVEESPEALLDNDPSFFSQFTVVIATNLPESTLLRLADVLWSANIPLLYVRSYGLYGYIRIQLKE-HTIVESHPDN 168 (425)
T ss_pred CEEEEEecccchhhhhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEecccCEEEEEEEECC-eEEEECCCCC
Confidence 9999998877432 2357899999999999999999999999999999999999999999999999984 5577776553
No 27
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.97 E-value=3.7e-31 Score=281.86 Aligned_cols=169 Identities=31% Similarity=0.547 Sum_probs=153.1
Q ss_pred CCHHHHHHHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 008516 2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ 81 (563)
Q Consensus 2 ~~~~~q~kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~ 81 (563)
++.++|++|++++|+|+|+||+|++++++|+++|||+|+|+|.|.|+.|||+||+||+++|||++||++++++++++||.
T Consensus 125 ~g~~~q~~l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~ 204 (376)
T PRK08762 125 VGEEGQRRLLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPD 204 (376)
T ss_pred cCHHHHHHHhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCC
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEeccCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEeccccceeeEEEEeCCC----Ccccccc
Q 008516 82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGK----TECYECQ 157 (563)
Q Consensus 82 v~I~~~~~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~G~~G~v~v~~~~~----t~Cy~C~ 157 (563)
++|+++...+++.. ..++++++|+||+|+||.++|.++|++|+++++|+|.+++.|+.|++.++.|+. ++||+|.
T Consensus 205 v~v~~~~~~~~~~~-~~~~~~~~D~Vv~~~d~~~~r~~ln~~~~~~~ip~i~~~~~g~~g~v~~~~p~~~~~~~~c~~c~ 283 (376)
T PRK08762 205 VQVEAVQERVTSDN-VEALLQDVDVVVDGADNFPTRYLLNDACVKLGKPLVYGAVFRFEGQVSVFDAGRQRGQAPCYRCL 283 (376)
T ss_pred CEEEEEeccCChHH-HHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEeccCEEEEEEEeCCCCCCCCCCHhhc
Confidence 99999988876432 356789999999999999999999999999999999999999999999998876 8999998
Q ss_pred CCC--CCCCCCceeec
Q 008516 158 PKP--APKTYPVCTIT 171 (563)
Q Consensus 158 ~~~--~~~~~p~cti~ 171 (563)
... .+...|.|...
T Consensus 284 ~~~~~~~~~~~~~~~~ 299 (376)
T PRK08762 284 FPEPPPPELAPSCAEA 299 (376)
T ss_pred CCCCCCcccCCCCccC
Confidence 532 22334566543
No 28
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=99.97 E-value=1.2e-30 Score=260.26 Aligned_cols=178 Identities=25% Similarity=0.352 Sum_probs=150.2
Q ss_pred HcCCcEEEECCcHHHHHHHHHHHHhCC-----C-----eEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhC
Q 008516 10 IKGAKVLMVGAGGIGCELLKTLALSGF-----Q-----DIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFR 79 (563)
Q Consensus 10 L~~~~VlvvGaGgiG~ellknLal~Gv-----g-----~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~n 79 (563)
-+..+|+||||||+||+++++|+++|+ | +|+|+|+|+|++|||||| +|...|||++||+++++++.+++
T Consensus 9 ~~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve~sNLnRQ-lf~~~dVG~~Ka~v~~~ri~~~~ 87 (244)
T TIGR03736 9 SRPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEANVGRQ-AFYPADVGQNKAIVLVNRLNQAM 87 (244)
T ss_pred hCCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEccchhhcc-cCChhHCCcHHHHHHHHHHHhcc
Confidence 478999999999999999999999973 4 899999999999999999 58889999999999999999988
Q ss_pred CCceEEEeccCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHh--c-CCCEEEecc--------ccc-----eeeE
Q 008516 80 PQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLA--A-DVPLVESGT--------TGF-----LGQV 143 (563)
Q Consensus 80 p~v~I~~~~~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~--~-~~pli~~gt--------~G~-----~G~v 143 (563)
+++|+++...+.+ .+++.++|+||+|+||.++|.++++.|.+ . ++||+++|+ .|. +|+.
T Consensus 88 -~~~i~a~~~~~~~----~~~~~~~DiVi~avDn~~aR~~l~~~~~~~~~~~~~~ld~Gn~~~~gqv~~g~i~~~~k~~~ 162 (244)
T TIGR03736 88 -GTDWTAHPERVER----SSTLHRPDIVIGCVDNRAARLAILRAFEGGYSGYAYWLDLGNRADDGQVILGQVPSRAKGEN 162 (244)
T ss_pred -CceEEEEEeeeCc----hhhhcCCCEEEECCCCHHHHHHHHHHHHHhcccccceecccCCCCCCcEEEEecccccccCC
Confidence 8999999988864 23467899999999999999999999988 3 489999999 555 6777
Q ss_pred EEEeCCCCccccccCCC---CCCCCCceeeccCCCC---c--hhHHHHHHHHHHHHHh
Q 008516 144 TVHVKGKTECYECQPKP---APKTYPVCTITSTPSK---F--VHCIVWAKDLLFAKLF 193 (563)
Q Consensus 144 ~v~~~~~t~Cy~C~~~~---~~~~~p~cti~~~p~~---~--~hci~~a~~~lf~~lf 193 (563)
++++|+.|+||.|..++ ++.+.|+||+...-.. . .-....|..+||+.+.
T Consensus 163 ~~~lP~vte~y~~~~d~~~~~~~~~PsCsla~al~~Q~l~iN~~~a~~~~~~L~~lf~ 220 (244)
T TIGR03736 163 RLRLPHVGELFPELIDPSVDPDDDRPSCSLAEALAKQSLFINQAIAVFAMNLLWKLFR 220 (244)
T ss_pred ceecCCchhhCcccccCccCCCCCCCCchHHHHhcCchhHHHHHHHHHHHHHHHHHHh
Confidence 88899999999998776 6679999998753221 1 1224566777777544
No 29
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=99.97 E-value=2.4e-30 Score=236.93 Aligned_cols=134 Identities=36% Similarity=0.707 Sum_probs=123.1
Q ss_pred cCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccC
Q 008516 11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN 90 (563)
Q Consensus 11 ~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~ 90 (563)
+++||+|+|+||+|++++++|+++|+++|+|+|.|.|+.+||+||+||+.+|+|++|+++++++++++||.++++++..+
T Consensus 1 r~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~ 80 (135)
T PF00899_consen 1 RNKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEK 80 (135)
T ss_dssp HT-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESH
T ss_pred CCCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeecc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEeccccceeeEEE
Q 008516 91 VKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTV 145 (563)
Q Consensus 91 i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~G~~G~v~v 145 (563)
+++. ...++++++|+||+|+|+.++|.+++++|+.+++|+|++|+.|+.|++..
T Consensus 81 ~~~~-~~~~~~~~~d~vi~~~d~~~~~~~l~~~~~~~~~p~i~~~~~g~~G~~~~ 134 (135)
T PF00899_consen 81 IDEE-NIEELLKDYDIVIDCVDSLAARLLLNEICREYGIPFIDAGVNGFYGQVVM 134 (135)
T ss_dssp CSHH-HHHHHHHTSSEEEEESSSHHHHHHHHHHHHHTT-EEEEEEEETTEEEEEE
T ss_pred cccc-cccccccCCCEEEEecCCHHHHHHHHHHHHHcCCCEEEEEeecCEEEEEE
Confidence 8543 34677899999999999999999999999999999999999999999864
No 30
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=99.97 E-value=8.6e-30 Score=258.78 Aligned_cols=177 Identities=27% Similarity=0.394 Sum_probs=148.1
Q ss_pred cEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCC--CCchHHHHHHHHHHhhCCCceEEEeccCC
Q 008516 14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSH--VGQSKAKVARDAVLKFRPQMSITAHHANV 91 (563)
Q Consensus 14 ~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~d--iGk~Ka~va~~~l~~~np~v~I~~~~~~i 91 (563)
||+|+|+||+||+++++|+++|||+|+|+|.|+|+.|||+||+||+.+| +|++||++++++++++||+++|+++...+
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D~Ve~sNL~RQ~L~~~~D~~iGk~Ka~aaa~~L~~iNP~v~v~~~~~~I 80 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSGKVSYSNPVRQSLFTFEDCKGGKPKAEAAAERLKEIFPSIDATGIVLSI 80 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEeccccCCcccccccchhhcCccHHHHHHHHHHHHCCCcEEEEeeeec
Confidence 6999999999999999999999999999999999999999999999999 99999999999999999999999987665
Q ss_pred C----------------CCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEeccccceeeEEEEeCC------
Q 008516 92 K----------------DPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKG------ 149 (563)
Q Consensus 92 ~----------------~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~G~~G~v~v~~~~------ 149 (563)
. +...-.++++++|+|++++||.++|..++.+|..+++|+|++ ..|+.|++....+.
T Consensus 81 pmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~d~tDn~esR~L~~~~~~~~~k~~I~a-alGfdg~lvmrhg~~~~~~~ 159 (307)
T cd01486 81 PMPGHPISESEVPSTLKDVKRLEELIKDHDVIFLLTDSRESRWLPTLLSAAKNKLVINA-ALGFDSYLVMRHGAGPQSQS 159 (307)
T ss_pred cccccccccccccccccCHHHHHHHHhhCCEEEECCCCHHHHHHHHHHHHHhCCcEEEE-EeccceEEEEEeCCCccccc
Confidence 1 011135788999999999999999999999999999999985 67999998876432
Q ss_pred -------------CCccccccCCCCCC------C-CCceeeccCCCCchhHHHHHHHHHHHHHh
Q 008516 150 -------------KTECYECQPKPAPK------T-YPVCTITSTPSKFVHCIVWAKDLLFAKLF 193 (563)
Q Consensus 150 -------------~t~Cy~C~~~~~~~------~-~p~cti~~~p~~~~hci~~a~~~lf~~lf 193 (563)
.-.||.|..--.|. + =..||+.. |...-.+-..|.|+ +-.+.
T Consensus 160 ~~~~~~~~~~~~~~lgCYfCnDv~ap~~s~~drtlDqqctvtr-pG~a~ias~~avEl-~~s~l 221 (307)
T cd01486 160 GSGDSSSDSIPGSRLGCYFCNDVVAPGDSLKDRTLDQQCTVTR-PGLSMIASSIAVEL-LVSLL 221 (307)
T ss_pred ccccccccccCCCCcceeeeCCEecCCCCCCCcccCcccceec-CchHHHHHHHHHHH-HHHHH
Confidence 47899998643332 1 25799876 55555556788884 44444
No 31
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=99.97 E-value=6.3e-30 Score=254.22 Aligned_cols=139 Identities=27% Similarity=0.396 Sum_probs=129.1
Q ss_pred CCHHHHHHHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 008516 2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ 81 (563)
Q Consensus 2 ~~~~~q~kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~ 81 (563)
+++++|++|++++|+|+|+||+|++++++|+++|||+|+|+|.|.|+.||||||+++..+|||++|+++++++++++||+
T Consensus 1 ~G~e~~~~L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~ 80 (231)
T cd00755 1 YGEEGLEKLRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPE 80 (231)
T ss_pred CCHHHHHHHhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEeccCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEeccccce
Q 008516 82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFL 140 (563)
Q Consensus 82 v~I~~~~~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~G~~ 140 (563)
++|+++...++.+....-+..++|+||+|.|+.+++..++++|+.+++|+|.++..|.+
T Consensus 81 ~~V~~~~~~i~~~~~~~l~~~~~D~VvdaiD~~~~k~~L~~~c~~~~ip~I~s~g~g~~ 139 (231)
T cd00755 81 CEVDAVEEFLTPDNSEDLLGGDPDFVVDAIDSIRAKVALIAYCRKRKIPVISSMGAGGK 139 (231)
T ss_pred cEEEEeeeecCHhHHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHHhCCCEEEEeCCcCC
Confidence 99999999887554444444679999999999999999999999999999999877654
No 32
>PRK14851 hypothetical protein; Provisional
Probab=99.97 E-value=7.1e-30 Score=287.43 Aligned_cols=157 Identities=27% Similarity=0.439 Sum_probs=147.4
Q ss_pred CCHHHHHHHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 008516 2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ 81 (563)
Q Consensus 2 ~~~~~q~kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~ 81 (563)
++++.|++|++++|+|||+||+||+++++|+++|||+|+|+|.|+|++||||||++|+.+|||++|+++++++++++||.
T Consensus 33 ~g~e~Q~kL~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~inP~ 112 (679)
T PRK14851 33 FTPGEQERLAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSINPF 112 (679)
T ss_pred cCHHHHHHHhcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHhCCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEeccCCCCCcchHhhcccccEEEEccCC--HHHHHHHHHHHHhcCCCEEEeccccceeeEEEEeCCCCccccccCC
Q 008516 82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDN--LDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPK 159 (563)
Q Consensus 82 v~I~~~~~~i~~~~~~~~~~~~~dvVi~alDn--~~ar~~in~~c~~~~~pli~~gt~G~~G~v~v~~~~~t~Cy~C~~~ 159 (563)
++|+++...+++.+ ..+|++++|+||+|+|| .++|.++++.|+.+++|+|.+|+.|+.|++.++.|+ +.|++|..+
T Consensus 113 ~~I~~~~~~i~~~n-~~~~l~~~DvVid~~D~~~~~~r~~l~~~c~~~~iP~i~~g~~G~~g~~~~~~p~-~~~~~~~~~ 190 (679)
T PRK14851 113 LEITPFPAGINADN-MDAFLDGVDVVLDGLDFFQFEIRRTLFNMAREKGIPVITAGPLGYSSAMLVFTPQ-GMGFDDYFN 190 (679)
T ss_pred CeEEEEecCCChHH-HHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHCCCCEEEeecccccceEEEEcCC-CCCHhHhcc
Confidence 99999999997543 36789999999999997 568999999999999999999999999999999886 788888765
Q ss_pred C
Q 008516 160 P 160 (563)
Q Consensus 160 ~ 160 (563)
-
T Consensus 191 ~ 191 (679)
T PRK14851 191 I 191 (679)
T ss_pred C
Confidence 4
No 33
>PRK14852 hypothetical protein; Provisional
Probab=99.96 E-value=1.2e-29 Score=289.52 Aligned_cols=157 Identities=24% Similarity=0.405 Sum_probs=146.9
Q ss_pred CCHHHHHHHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 008516 2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ 81 (563)
Q Consensus 2 ~~~~~q~kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~ 81 (563)
++.++|+||++++|+|||+||+|++++++|+++|||+|+|+|.|+|+.|||||||+++.+|||++|+++++++++++||.
T Consensus 322 ig~e~Q~kL~~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~INP~ 401 (989)
T PRK14852 322 VDYAGQRRLLRSRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSVNPF 401 (989)
T ss_pred cCHHHHHHHhcCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHHHCCC
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEeccCCCCCcchHhhcccccEEEEccCCH--HHHHHHHHHHHhcCCCEEEeccccceeeEEEEeCCCCccccccCC
Q 008516 82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNL--DARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPK 159 (563)
Q Consensus 82 v~I~~~~~~i~~~~~~~~~~~~~dvVi~alDn~--~ar~~in~~c~~~~~pli~~gt~G~~G~v~v~~~~~t~Cy~C~~~ 159 (563)
++|+++...+++++ ..+|++++|+||+|+|+. ++|+++++.|+++++|+|.+|+.|+.|++.++.|+. .|++|..+
T Consensus 402 v~I~~~~~~I~~en-~~~fl~~~DiVVDa~D~~~~~~rr~l~~~c~~~~IP~I~ag~~G~~g~v~v~~p~~-~~~~~~f~ 479 (989)
T PRK14852 402 LDIRSFPEGVAAET-IDAFLKDVDLLVDGIDFFALDIRRRLFNRALELGIPVITAGPLGYSCALLVFMPGG-MNFDSYFG 479 (989)
T ss_pred CeEEEEecCCCHHH-HHHHhhCCCEEEECCCCccHHHHHHHHHHHHHcCCCEEEeeccccCeeEEEEcCCC-CCHHHhCC
Confidence 99999999986643 468999999999999984 578899999999999999999999999999998764 99999865
Q ss_pred C
Q 008516 160 P 160 (563)
Q Consensus 160 ~ 160 (563)
-
T Consensus 480 ~ 480 (989)
T PRK14852 480 I 480 (989)
T ss_pred C
Confidence 3
No 34
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=99.96 E-value=3.7e-29 Score=231.15 Aligned_cols=133 Identities=38% Similarity=0.682 Sum_probs=126.6
Q ss_pred cEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccCCCC
Q 008516 14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKD 93 (563)
Q Consensus 14 ~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~i~~ 93 (563)
+|+|+|+||+|++++++|+++|+++|+|+|.|.|+++||+||++++.+|+|++|+++++++++++||+++++.+...+.+
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~~ 80 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGISE 80 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecCh
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999988754
Q ss_pred CcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEeccccceeeEEEEe
Q 008516 94 PKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHV 147 (563)
Q Consensus 94 ~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~G~~G~v~v~~ 147 (563)
.. ..++++++|+||+|.|+.++|.+++++|+++++|+|++|+.|+.|+++++.
T Consensus 81 ~~-~~~~~~~~diVi~~~d~~~~~~~l~~~~~~~~i~~i~~~~~g~~g~~~~~~ 133 (143)
T cd01483 81 DN-LDDFLDGVDLVIDAIDNIAVRRALNRACKELGIPVIDAGGLGLGGDIQVID 133 (143)
T ss_pred hh-HHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcCCCcEEEEEEEE
Confidence 43 267899999999999999999999999999999999999999999999886
No 35
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=99.96 E-value=3e-30 Score=260.10 Aligned_cols=167 Identities=29% Similarity=0.529 Sum_probs=153.7
Q ss_pred CCHHHHHHHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 008516 2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ 81 (563)
Q Consensus 2 ~~~~~q~kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~ 81 (563)
++-.+|.+|++++||||||||+||..+..|+.+|+|+|-|||.|.||.|||.||.++.+..+|++||+.|++.++++||+
T Consensus 56 ~gV~GQ~~Lk~s~VLVVGaGGLGcPa~~YLaaaGvG~lGiVD~DvVe~sNlhRQVlh~ea~vg~~Ka~sA~~~lr~lNs~ 135 (427)
T KOG2017|consen 56 FGVHGQLSLKNSSVLVVGAGGLGCPAAQYLAAAGVGRLGIVDYDVVELSNLHRQVLHTEARVGMHKAESAAAFLRRLNSH 135 (427)
T ss_pred cccccccccCCccEEEEccCCCCCHHHHHHHHcCCCeecccccceeehhhHHHHHhhhhhhhhhHHHHHHHHHHHhcCCC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEeccCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEeccccceeeEEEEeCCCCccccccCCC-
Q 008516 82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKP- 160 (563)
Q Consensus 82 v~I~~~~~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~G~~G~v~v~~~~~t~Cy~C~~~~- 160 (563)
++|+.|...+..++ ..+.++++|+|++|+||+..|..+++.|+..++|+|.+...++.||+.+..-...+||+|..+.
T Consensus 136 v~v~~y~~~L~~sN-a~~Ii~~YdvVlDCTDN~~TRYLisD~CVlLgkpLVSgSaLr~EGQLtvYny~~GPCYRClFP~P 214 (427)
T KOG2017|consen 136 VEVQTYNEFLSSSN-AFDIIKQYDVVLDCTDNVPTRYLISDVCVLLGKPLVSGSALRWEGQLTVYNYNNGPCYRCLFPNP 214 (427)
T ss_pred ceeeechhhccchh-HHHHhhccceEEEcCCCccchhhhhhHHHHcCCcccccccccccceeEEeecCCCceeeecCCCC
Confidence 99999999886543 4688999999999999999999999999999999999999999999999988999999999543
Q ss_pred -CCCCCCcee
Q 008516 161 -APKTYPVCT 169 (563)
Q Consensus 161 -~~~~~p~ct 169 (563)
+|.....|.
T Consensus 215 pp~~~vt~C~ 224 (427)
T KOG2017|consen 215 PPPEAVTNCA 224 (427)
T ss_pred cChHHhcccc
Confidence 233555564
No 36
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=99.96 E-value=4.4e-29 Score=245.73 Aligned_cols=153 Identities=29% Similarity=0.481 Sum_probs=136.0
Q ss_pred CCHHHHHHHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 008516 2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ 81 (563)
Q Consensus 2 ~~~~~q~kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~ 81 (563)
+++++|++|++++|+|+|+||+||+++++|+++|+++|+|+|.|.|+.+||+||+++ .+|+|++|+++++++++++||+
T Consensus 18 ~g~~~q~~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~-~~dvG~~Ka~~a~~~l~~lnp~ 96 (212)
T PRK08644 18 HTPKLLEKLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYF-ISQIGMPKVEALKENLLEINPF 96 (212)
T ss_pred cCHHHHHHHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEee-hhhCCChHHHHHHHHHHHHCCC
Confidence 688999999999999999999999999999999999999999999999999999976 7899999999999999999999
Q ss_pred ceEEEeccCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhc-CCCEEEeccccceeeEEEEeCCC--Cccccc
Q 008516 82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAA-DVPLVESGTTGFLGQVTVHVKGK--TECYEC 156 (563)
Q Consensus 82 v~I~~~~~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~-~~pli~~gt~G~~G~v~v~~~~~--t~Cy~C 156 (563)
++|+++...+++.. ..++++++|+||+|+||.++|..+++.|+++ ++|+|.++..|..|++..+.+.. ..||.|
T Consensus 97 v~v~~~~~~i~~~~-~~~~~~~~DvVI~a~D~~~~r~~l~~~~~~~~~~p~I~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (212)
T PRK08644 97 VEIEAHNEKIDEDN-IEELFKDCDIVVEAFDNAETKAMLVETVLEHPGKKLVAASGMAGYGDSNSIKTRRIGKNFYIV 173 (212)
T ss_pred CEEEEEeeecCHHH-HHHHHcCCCEEEECCCCHHHHHHHHHHHHHhCCCCEEEeehhhccCCceEEEecCCCCCeeEC
Confidence 99999998886532 3478999999999999999999999999998 99999986666667766554433 455544
No 37
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=99.95 E-value=5.2e-28 Score=281.86 Aligned_cols=149 Identities=19% Similarity=0.473 Sum_probs=140.4
Q ss_pred CCHHHHHHHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 008516 2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ 81 (563)
Q Consensus 2 ~~~~~q~kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~ 81 (563)
+|.++|+||++++|+|+|+||+|+|++|||+++|||+|+|+|.|.|+.+||+||||++++|||++||++++++++++||.
T Consensus 14 ~G~eaq~kL~~s~VLIiG~gGLG~EiaKnL~laGVg~iti~D~d~v~~sdL~rQf~~~~~dIGk~Kaea~~~~L~eLNp~ 93 (1008)
T TIGR01408 14 LGDEAMQKMAKSNVLISGMGGLGLEIAKNLVLAGVKSVTLHDTEKCQAWDLSSNFFLSEDDVGRNRAEAVVKKLAELNPY 93 (1008)
T ss_pred cCHHHHHHHhhCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCeecHhhCCCceecchHHcCchHHHHHHHHHHHHCCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEeccCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcC--CCEEEeccccceeeEEEEeCCCCcccc
Q 008516 82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAAD--VPLVESGTTGFLGQVTVHVKGKTECYE 155 (563)
Q Consensus 82 v~I~~~~~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~--~pli~~gt~G~~G~v~v~~~~~t~Cy~ 155 (563)
++|+++...+ +.+++++||+||+|.++.+.+..+|++|+.++ +|+|.+++.|+.|++++.++....|.+
T Consensus 94 V~V~~~~~~l-----~~e~l~~fdvVV~t~~~~~~~~~in~~cr~~~~~I~fI~~~~~G~~G~vf~D~g~~f~~~d 164 (1008)
T TIGR01408 94 VHVSSSSVPF-----NEEFLDKFQCVVLTEMSLPLQKEINDFCHSQCPPIAFISADVRGLFGSLFCDFGDEFEVLD 164 (1008)
T ss_pred ceEEEecccC-----CHHHHcCCCEEEECCCCHHHHHHHHHHHHHcCCCeEEEEEeecceEEEEEecCCCceEEEe
Confidence 9999998766 35789999999999999999999999999999 899999999999999998765555544
No 38
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=99.95 E-value=1.1e-27 Score=228.82 Aligned_cols=142 Identities=26% Similarity=0.437 Sum_probs=129.1
Q ss_pred cEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccCCCC
Q 008516 14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKD 93 (563)
Q Consensus 14 ~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~i~~ 93 (563)
||+|+|+||+|++++++|+++|+++|+|+|.|.|+.+||+||++ ..+|+|++|+++++++++++||+++++++...+++
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~-~~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~~~ 79 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQY-FLSQIGEPKVEALKENLREINPFVKIEAINIKIDE 79 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccc-cHhhCCChHHHHHHHHHHHHCCCCEEEEEEeecCh
Confidence 69999999999999999999999999999999999999999995 56899999999999999999999999999988865
Q ss_pred CcchHhhcccccEEEEccCCHHHHHHHHHHHHhc-CCCEEEeccccceeeEEEEeCCC--Ccccccc
Q 008516 94 PKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAA-DVPLVESGTTGFLGQVTVHVKGK--TECYECQ 157 (563)
Q Consensus 94 ~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~-~~pli~~gt~G~~G~v~v~~~~~--t~Cy~C~ 157 (563)
. ...++++++|+||+|+||.++|..+++.|.+. ++|+|.++..|..|++..+.++. .+||+|.
T Consensus 80 ~-~~~~~l~~~DlVi~~~d~~~~r~~i~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (174)
T cd01487 80 N-NLEGLFGDCDIVVEAFDNAETKAMLAESLLGNKNKPVVCASGMAGFGDSNNIKTKKISDNFYICG 145 (174)
T ss_pred h-hHHHHhcCCCEEEECCCCHHHHHHHHHHHHHHCCCCEEEEehhhccCCeEEEEecCCCCCeEEee
Confidence 3 24578999999999999999999888877776 99999998889999998876654 5799998
No 39
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=99.95 E-value=8.4e-28 Score=243.19 Aligned_cols=137 Identities=27% Similarity=0.468 Sum_probs=125.8
Q ss_pred CCHHHHHHHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 008516 2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ 81 (563)
Q Consensus 2 ~~~~~q~kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~ 81 (563)
+++++|++|++++|+|+|+||+||+++++|+++|||+|+|+|+|.|+.||+|||+++..+|||++|++++++++.++||+
T Consensus 20 ~G~e~~~kL~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~INP~ 99 (268)
T PRK15116 20 YGEKALQLFADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPE 99 (268)
T ss_pred hCHHHHHHhcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhHCCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEeccCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEecccc
Q 008516 82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTG 138 (563)
Q Consensus 82 v~I~~~~~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~G 138 (563)
++|+++...++.+.....+..++|+||+|.|+..++..++++|+.+++|+|.+|..|
T Consensus 100 ~~V~~i~~~i~~e~~~~ll~~~~D~VIdaiD~~~~k~~L~~~c~~~~ip~I~~gGag 156 (268)
T PRK15116 100 CRVTVVDDFITPDNVAEYMSAGFSYVIDAIDSVRPKAALIAYCRRNKIPLVTTGGAG 156 (268)
T ss_pred cEEEEEecccChhhHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEECCcc
Confidence 999999877764433333335799999999999999999999999999999997555
No 40
>PRK07877 hypothetical protein; Provisional
Probab=99.95 E-value=2.4e-27 Score=267.66 Aligned_cols=162 Identities=20% Similarity=0.323 Sum_probs=143.6
Q ss_pred CCHHHHHHHcCCcEEEECCcHHHHHHHHHHHHhCC-CeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCC
Q 008516 2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGF-QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRP 80 (563)
Q Consensus 2 ~~~~~q~kL~~~~VlvvGaGgiG~ellknLal~Gv-g~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np 80 (563)
+++++|++|++++|+|||+| +||.++.+|+++|| |+|+|+|.|+||.|||||| +|+..|+|++|+++++++++++||
T Consensus 97 ig~~~Q~~L~~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq-~~~~~diG~~Kv~~a~~~l~~inp 174 (722)
T PRK07877 97 ITAEEQERLGRLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRV-PAGVFDLGVNKAVVAARRIAELDP 174 (722)
T ss_pred CCHHHHHHHhcCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccc-cCChhhcccHHHHHHHHHHHHHCC
Confidence 78999999999999999997 99999999999996 9999999999999999999 589999999999999999999999
Q ss_pred CceEEEeccCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEeccccceeeEE---EEeCCCCcccccc
Q 008516 81 QMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVT---VHVKGKTECYECQ 157 (563)
Q Consensus 81 ~v~I~~~~~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~G~~G~v~---v~~~~~t~Cy~C~ 157 (563)
+++|+++...+++++ -.++++++|+|++|+||.++|..+|+.|+++++|+|.++..+ |++. ..+...++||.|.
T Consensus 175 ~i~v~~~~~~i~~~n-~~~~l~~~DlVvD~~D~~~~R~~ln~~a~~~~iP~i~~~~~~--g~~~~e~~~~~p~~pc~~cl 251 (722)
T PRK07877 175 YLPVEVFTDGLTEDN-VDAFLDGLDVVVEECDSLDVKVLLREAARARRIPVLMATSDR--GLLDVERFDLEPDRPILHGL 251 (722)
T ss_pred CCEEEEEeccCCHHH-HHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcCCC--CCcCcceeeeCCCCceeecc
Confidence 999999999997543 467899999999999999999999999999999999998555 7773 2234589999999
Q ss_pred CCCCC-CCCCce
Q 008516 158 PKPAP-KTYPVC 168 (563)
Q Consensus 158 ~~~~~-~~~p~c 168 (563)
.+..+ ..++.+
T Consensus 252 ~~~~~~~~~~~~ 263 (722)
T PRK07877 252 LGDIDAAKLAGL 263 (722)
T ss_pred CCCCChhhhccC
Confidence 75433 334433
No 41
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=99.94 E-value=5.3e-26 Score=221.90 Aligned_cols=153 Identities=25% Similarity=0.439 Sum_probs=127.0
Q ss_pred CCHHHHHHHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 008516 2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ 81 (563)
Q Consensus 2 ~~~~~q~kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~ 81 (563)
++++.|++|++++|+|+|+||+|++++++|+++|+++++|+|.|.|+.+||+||+ |..+|+|++|++++++.++++||.
T Consensus 11 ~~~~~q~~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~-~~~~~iG~~Ka~~~~~~l~~inp~ 89 (200)
T TIGR02354 11 HTPKIVQKLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQ-YKASQVGEPKTEALKENISEINPY 89 (200)
T ss_pred cCHHHHHHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEccccccccc-CChhhCCCHHHHHHHHHHHHHCCC
Confidence 5789999999999999999999999999999999999999999999999999997 567899999999999999999999
Q ss_pred ceEEEeccCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHH-HhcC-CCEEEeccccceeeE--EEE-e-CCCCcccc
Q 008516 82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLC-LAAD-VPLVESGTTGFLGQV--TVH-V-KGKTECYE 155 (563)
Q Consensus 82 v~I~~~~~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c-~~~~-~pli~~gt~G~~G~v--~v~-~-~~~t~Cy~ 155 (563)
++++++..++++.. ..++++++|+||+|+||.++|..+++.| ...+ .+++.+ .|..|+. ..+ . +....||.
T Consensus 90 ~~i~~~~~~i~~~~-~~~~~~~~DlVi~a~Dn~~~k~~l~~~~~~~~~~~~ii~~--~g~~g~~~~~~~~~~~~~~~~~~ 166 (200)
T TIGR02354 90 TEIEAYDEKITEEN-IDKFFKDADIVCEAFDNAEAKAMLVNAVLEKYKDKYLIAA--SGLAGYDDANSIKTRKISKHFYL 166 (200)
T ss_pred CEEEEeeeeCCHhH-HHHHhcCCCEEEECCCCHHHHHHHHHHHHHHcCCCcEEEE--eccccCCCCceEEecccCCCEEE
Confidence 99999999886543 3567899999999999999998876555 4444 444442 3444444 223 2 23457899
Q ss_pred ccC
Q 008516 156 CQP 158 (563)
Q Consensus 156 C~~ 158 (563)
|..
T Consensus 167 ~~~ 169 (200)
T TIGR02354 167 CGD 169 (200)
T ss_pred cCC
Confidence 943
No 42
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=99.94 E-value=2e-26 Score=224.40 Aligned_cols=137 Identities=29% Similarity=0.491 Sum_probs=128.9
Q ss_pred CCHHHHHHHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 008516 2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ 81 (563)
Q Consensus 2 ~~~~~q~kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~ 81 (563)
+++++.++|++++|+|+|+||+|+.++..|+++|+|+|+|||+|.|+.+|+|||.--...+||++|+++++++++.+||.
T Consensus 20 ~G~~~lekl~~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv~vm~eri~~InP~ 99 (263)
T COG1179 20 YGEDGLEKLKQAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALLGDIGKPKVEVMKERIKQINPE 99 (263)
T ss_pred cChhHHHHHhhCcEEEEecCchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhhhhhcccHHHHHHHHHHHhhCCC
Confidence 68999999999999999999999999999999999999999999999999999976667899999999999999999999
Q ss_pred ceEEEeccCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEecccc
Q 008516 82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTG 138 (563)
Q Consensus 82 v~I~~~~~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~G 138 (563)
++|.++...+++++..+-+..+||+||+|.|++.+...+-.+|+.+++|+|.+|-.|
T Consensus 100 c~V~~~~~f~t~en~~~~~~~~~DyvIDaiD~v~~Kv~Li~~c~~~ki~vIss~Gag 156 (263)
T COG1179 100 CEVTAINDFITEENLEDLLSKGFDYVIDAIDSVRAKVALIAYCRRNKIPVISSMGAG 156 (263)
T ss_pred ceEeehHhhhCHhHHHHHhcCCCCEEEEchhhhHHHHHHHHHHHHcCCCEEeecccc
Confidence 999999999998877666677899999999999999999999999999999997544
No 43
>TIGR03603 cyclo_dehy_ocin bacteriocin biosynthesis cyclodehydratase, SagC family. Members of this protein family include enzymes related to SagC, a cyclodehydratase involved in the biosynthesis of streptolysin S in Streptococcus pyogenes from the protoxin polypeptide (product of the sagA gene). This protein family serves as a marker for widely distributed prokaryotic systems for making a general class of heterocycle-containing bacteriocins. Note that this model does not find all possible examples of bacteriocin biosynthesis cyclodehydratases, an in particular misses the E. coli plasmid protein McbB of microcin B17 biosynthesis.
Probab=99.93 E-value=6.4e-26 Score=235.70 Aligned_cols=139 Identities=16% Similarity=0.230 Sum_probs=131.7
Q ss_pred HHHHHHHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCce
Q 008516 4 ERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMS 83 (563)
Q Consensus 4 ~~~q~kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~ 83 (563)
+++|++|++++|+ +||+|+.++..|+. |||+|+|+|.|.|+.|||+ +||+++|||++|+++|++++.++||.++
T Consensus 68 ~~~Q~kL~~s~Vl---~GGLGs~va~~La~-GVg~L~ivD~D~Ve~SNL~--~L~~~~diG~~K~~~a~~~L~~lnp~v~ 141 (318)
T TIGR03603 68 EDYQKHLKKSKVL---LGKFGANIAYNLCN-NVGALFISDKTYFQETAEI--DLYSKEFILKKDIRDLTSNLDALELTKN 141 (318)
T ss_pred HHHHHHHhhCeee---cccchHHHHHHHhC-CCCEEEEEcCCEechhhHH--HHhChhhcCcHHHHHHHHHHHHhCCCCE
Confidence 5589999999999 99999999999999 9999999999999999999 8999999999999999999999999999
Q ss_pred EEEeccCCCCCcchHhhcccccEEEEccCCHHHHHH--HHHHHHhcCCCEEEeccccceeeEEEEeCCCCccccccC
Q 008516 84 ITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRH--VNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQP 158 (563)
Q Consensus 84 I~~~~~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~--in~~c~~~~~pli~~gt~G~~G~v~v~~~~~t~Cy~C~~ 158 (563)
|+.. .++++++|+|++|+||+..|.. +|+.|++.++|+|.++..|+.|++.++.|+.++||+|..
T Consensus 142 i~~~----------~~li~~~DlVid~tDn~~~r~L~~iN~ac~~~~~PlV~gav~g~~Gqv~~~~P~~t~C~~Cl~ 208 (318)
T TIGR03603 142 VDEL----------KDLLKDYNYIIICTEHSNISLLRGLNKLSKETKKPNTIAFIDGPFVFITCTLPPETGCFECLE 208 (318)
T ss_pred EeeH----------HHHhCCCCEEEECCCCccHhHHHHHHHHHHHHCCCEEEEEEccCEEEEEEEeCCCCCcHHHcc
Confidence 9763 3578999999999999999955 999999999999999999999999999999999999984
No 44
>PRK06153 hypothetical protein; Provisional
Probab=99.92 E-value=4.7e-25 Score=230.65 Aligned_cols=147 Identities=18% Similarity=0.283 Sum_probs=126.1
Q ss_pred HHHHHHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCcccc-CCCCCCCCc--hHHHHHHHHHHhhCCC
Q 008516 5 RQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQF-LFRQSHVGQ--SKAKVARDAVLKFRPQ 81 (563)
Q Consensus 5 ~~q~kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqf-Lf~~~diGk--~Ka~va~~~l~~~np~ 81 (563)
+.|++|++++|+||||||+||.++..|+++||++|+|+|.|.|+.|||+||+ +|+.+|+|+ +|++++++++.++||
T Consensus 169 ~~q~kL~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~~in~- 247 (393)
T PRK06153 169 ALSAKLEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYSNMRR- 247 (393)
T ss_pred HHHHHHhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCCEecccccccccccCCHhHcCCcchHHHHHHHHHHHhCC-
Confidence 5699999999999999999999999999999999999999999999999998 678999999 999999999999998
Q ss_pred ceEEEeccCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEeccccceeeEEEEeCCCCccccccCCC
Q 008516 82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKP 160 (563)
Q Consensus 82 v~I~~~~~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~G~~G~v~v~~~~~t~Cy~C~~~~ 160 (563)
.|+++...+++. +.+.+.++|+||+|+|+.++|..++++|..+++|+|++|+. +.+.-.....|.+|+...
T Consensus 248 -~I~~~~~~I~~~--n~~~L~~~DiV~dcvDn~~aR~~ln~~a~~~gIP~Id~G~~-----l~~~~g~l~G~~Rvt~~~ 318 (393)
T PRK06153 248 -GIVPHPEYIDED--NVDELDGFTFVFVCVDKGSSRKLIVDYLEALGIPFIDVGMG-----LELSNGSLGGILRVTLST 318 (393)
T ss_pred -eEEEEeecCCHH--HHHHhcCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEeeec-----ceecCCCcCcEEEEEEec
Confidence 567777777543 34578999999999999999999999999999999999853 111111124577776533
No 45
>PF02134 UBACT: Repeat in ubiquitin-activating (UBA) protein; InterPro: IPR000127 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme is responsible for activating ubiquitin, the first step in ubiquitinylation. The E1 enzyme hydrolyses ATP and adenylates the C-terminal glycine residue of ubiquitin, and then links this residue to the active site cysteine of E1, yielding a ubiquitin-thioester and free AMP. To be fully active, E1 must non-covalently bind to and adenylate a second ubiquitin molecule. The E1 enzyme can then transfer the thioester-linked ubiquitin molecule to a cysteine residue on the ubiquitin-conjugating enzyme, E2, in an ATP-dependent reaction. This domain is found 2 times in each member of the ubiquitin activating enzymes and is located downstream of the active site cysteine [].; GO: 0005524 ATP binding, 0008641 small protein activating enzyme activity, 0006464 protein modification process; PDB: 1Z7L_A 3CMM_A 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H ....
Probab=99.91 E-value=1.1e-24 Score=175.40 Aligned_cols=67 Identities=52% Similarity=0.681 Sum_probs=56.4
Q ss_pred ccCCCcHhHHHHHHHHHHHHHHHcCCCCCCHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHHhcC
Q 008516 333 SFDKDDQLAVEFVTAAANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLLKD 399 (563)
Q Consensus 333 ~FdKDDd~h~dFV~AasNLRA~~f~I~~~s~~~~K~iAGnIIPAIATTnAiVAGl~vlE~~K~l~~~ 399 (563)
+|||||++|++||+|+|||||++||||+.|++++++++|+||||++||||||||++++|++|+++++
T Consensus 1 ~Fd~dd~~h~~fI~a~anLrA~~f~I~~~~~~~~~~i~~~iIP~~~~t~~iva~~~~~e~~k~~~~~ 67 (67)
T PF02134_consen 1 EFDKDDPLHLDFIYAAANLRAQNFGIPPLDREEIKKIAGNIIPAFAPTNAIVAGIAVNELYKLLQNC 67 (67)
T ss_dssp ---TTSHHHHHHHHHHHHHHHHHTT---S-HHHHHHHHTTEE-B-HHHHHHHHHHHHHHHHHHHTT-
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHhcCcCCCcCCchhHHHHHHHHHHHHHHhcC
Confidence 5999999999999999999999999999999999999999999999999999999999999999863
No 46
>KOG2336 consensus Molybdopterin biosynthesis-related protein [Coenzyme transport and metabolism]
Probab=99.89 E-value=4.9e-23 Score=202.64 Aligned_cols=153 Identities=31% Similarity=0.611 Sum_probs=139.9
Q ss_pred HHHHHHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceE
Q 008516 5 RQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSI 84 (563)
Q Consensus 5 ~~q~kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I 84 (563)
...+||+...|.|||.||+|+-.+..|.++|+|++.+.|.|+||..|+||-| |+++..|.+|+++|.+.+..+||++.|
T Consensus 75 ~dYErIR~~aVAiVGvGGVGSV~AeMLTRCGIGkLlLfDYDkVElANMNRLF-f~P~QaGlsKv~AA~~TL~~iNPDV~i 153 (422)
T KOG2336|consen 75 DDYERIREFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLF-FQPDQAGLSKVDAAVQTLAEINPDVVI 153 (422)
T ss_pred hhHHHHhhheeEEEecCchhHHHHHHHHhcCcceEEEeecchhhhhcccccc-cCcccccchHHHHHHHHHHhcCCCeEE
Confidence 4578999999999999999999999999999999999999999999999997 899999999999999999999999999
Q ss_pred EEeccCCCC-CcchHhhc-----------ccccEEEEccCCHHHHHHHHHHHHhcCCCEEEeccc--cceeeEEEEeCCC
Q 008516 85 TAHHANVKD-PKFNVEFF-----------KQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTT--GFLGQVTVHVKGK 150 (563)
Q Consensus 85 ~~~~~~i~~-~~~~~~~~-----------~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~--G~~G~v~v~~~~~ 150 (563)
+.|.-+|+. ..|+ .|. +..|+|+.|+||.+||..+|..|-..+.-|+++|.. ...||++.+.||.
T Consensus 154 E~hn~NITTvenFd-~F~~~is~g~~~~gkpvDLVLSCVDNfEARMavN~ACNE~~q~WmESGVSEnAVSGHIQ~i~PGe 232 (422)
T KOG2336|consen 154 EVHNYNITTVENFD-TFTDRISNGSLCPGKPVDLVLSCVDNFEARMAVNQACNELNQTWMESGVSENAVSGHIQLIVPGE 232 (422)
T ss_pred EEeecceeeehhHH-HHHHHhhcCCCCCCCcceEEeeehhhHHHHHHHHHHHHHhhhHHHHccCccccccceeEEecCCc
Confidence 999999853 2222 222 358999999999999999999999999999999976 5779999999999
Q ss_pred CccccccCC
Q 008516 151 TECYECQPK 159 (563)
Q Consensus 151 t~Cy~C~~~ 159 (563)
|.|+.|.|+
T Consensus 233 tACFACaPP 241 (422)
T KOG2336|consen 233 TACFACAPP 241 (422)
T ss_pred cceecccCc
Confidence 999999976
No 47
>KOG2014 consensus SMT3/SUMO-activating complex, AOS1/RAD31 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=3e-22 Score=199.73 Aligned_cols=146 Identities=21% Similarity=0.473 Sum_probs=138.5
Q ss_pred CHHHHHHHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCc
Q 008516 3 SERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQM 82 (563)
Q Consensus 3 ~~~~q~kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v 82 (563)
+-++|++|+++||||+|.+|+|.|++|||+++|||++++.|.-.|...+++-|||.+.+++|+.||++..++++.+||.|
T Consensus 22 G~~AQ~~lr~s~VLlig~k~lgaEiaKnivLaGV~~ltlLD~~~Vt~Ed~~~qFli~~~~vg~~raeas~erl~~LNPmV 101 (331)
T KOG2014|consen 22 GLEAQRRLRKSHVLLIGGKGLGAEIAKNIVLAGVGSLTLLDDRLVTEEDVGAQFLISASSVGQTRAEASLERLQDLNPMV 101 (331)
T ss_pred cHHHHHhhhhceEEEecCchHHHHHHHHhhhcccceeEEeeccccchhcCCceeEEchhhhchHHHHHHHHHHHhcCCce
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEeccCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEeccccceeeEEEEeCCC
Q 008516 83 SITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGK 150 (563)
Q Consensus 83 ~I~~~~~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~G~~G~v~v~~~~~ 150 (563)
+|....+++.+. +++||.+||+||..--+.+.+..+|.+|++.+++++.++..|+.|+++..+.++
T Consensus 102 ~v~~d~edl~ek--~eeff~qFdlVV~~~~s~e~~~kvn~icrk~~i~F~a~d~~g~~Gy~F~dL~~h 167 (331)
T KOG2014|consen 102 DVSVDKEDLSEK--DEEFFTQFDLVVATDQSREEKCKVNEICRKLNIAFYAGDCFGLCGYAFADLQEH 167 (331)
T ss_pred EEEechhhhhhc--chhhhhceeEEEEeccchhhhhhHHHHHHhcCceEEeccccceeeeeeeehhhh
Confidence 999999988653 589999999999988889999999999999999999999999999999987654
No 48
>PTZ00245 ubiquitin activating enzyme; Provisional
Probab=99.87 E-value=6.5e-22 Score=194.76 Aligned_cols=106 Identities=15% Similarity=0.283 Sum_probs=97.8
Q ss_pred CCHHHHHHHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 008516 2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ 81 (563)
Q Consensus 2 ~~~~~q~kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~ 81 (563)
++.++|+||++++|+|+|+||+|+|++|||+++|||+|+|+|.|.|+.+||+|||+++. ++|++|+++++++++++||.
T Consensus 16 wG~EgQ~KL~~SrVLVVG~GGLGsEVAKnLaLAGVGsItIvDdD~Ve~SNL~RQfl~~~-dvGk~KAeaAa~~L~eLNP~ 94 (287)
T PTZ00245 16 WGKSTQQQLMHTSVALHGVAGAAAEAAKNLVLAGVRAVAVADEGLVTDADVCTNYLMQG-EAGGTRGARALGALQRLNPH 94 (287)
T ss_pred hCHHHHHHHhhCeEEEECCCchHHHHHHHHHHcCCCeEEEecCCccchhhhcccccccc-ccCCcHHHHHHHHHHHHCCC
Confidence 68899999999999999999999999999999999999999999999999999999987 68999999999999999999
Q ss_pred ceEEEeccCCCCCcchHhhcccccEEEEccCCHH
Q 008516 82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLD 115 (563)
Q Consensus 82 v~I~~~~~~i~~~~~~~~~~~~~dvVi~alDn~~ 115 (563)
++|+++..+++. -.+|++||.+.-+.+
T Consensus 95 V~V~~i~~rld~-------~n~fqvvV~~~~~le 121 (287)
T PTZ00245 95 VSVYDAVTKLDG-------SSGTRVTMAAVITEE 121 (287)
T ss_pred cEEEEcccccCC-------cCCceEEEEEcccHH
Confidence 999999887754 348899998876543
No 49
>KOG2012 consensus Ubiquitin activating enzyme UBA1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=7.9e-22 Score=216.64 Aligned_cols=179 Identities=20% Similarity=0.442 Sum_probs=164.6
Q ss_pred CCHHHHHHHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 008516 2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ 81 (563)
Q Consensus 2 ~~~~~q~kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~ 81 (563)
+|+++.+||+.++|||.|+||+|.|+||||+++||+++||.|...+..++|+.||+++++|||+++|++..+++.++|+.
T Consensus 27 lG~eAM~~m~~S~VLisGl~GLGvEIAKNliLaGVksvTlhD~~~~~~~DLssqf~L~E~DigknRA~as~~~LaeLN~y 106 (1013)
T KOG2012|consen 27 LGHEAMRRMQGSNVLISGLQGLGVEIAKNLILAGVKSVTLHDPRPVQLSDLSSQFYLSEEDIGKNRAEASVEKLAELNNY 106 (1013)
T ss_pred ccHHHHHHHhhCcEEEecCCcccHHHHhhHhhhccceEEeeCCCcccHHhhccceeeeHHhcCCchHHHHHHHHHHhhcc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEeccCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEeccccceeeEEEEeCCCCccccccCCCC
Q 008516 82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPA 161 (563)
Q Consensus 82 v~I~~~~~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~G~~G~v~v~~~~~t~Cy~C~~~~~ 161 (563)
|.|..+.+.. +.+|+++|++||-+--..+....||++|+++++.+|.+.+.|..|+++..++....|++ ..+..
T Consensus 107 V~V~v~t~~~-----~~e~L~~FqvVVlt~~~le~q~~i~~fch~~~i~fi~ad~RGLfg~lFCDFG~eF~v~D-~tGee 180 (1013)
T KOG2012|consen 107 VPVVVLTGPL-----TEEFLSDFQVVVLTDASLEEQLKINDFCHSHGIAFIAADTRGLFGQLFCDFGEEFTVLD-PTGEE 180 (1013)
T ss_pred eeeEEecCcc-----cHHHHhCCcEEEEecCchHHHHHHHHHHHhcCeEEEEeccchhhhhhhccCCCceEEeC-CCCCc
Confidence 9999998766 47899999999998888899999999999999999999999999999999999988887 45667
Q ss_pred CCCCCceeeccCCCCchhHHHHHHH
Q 008516 162 PKTYPVCTITSTPSKFVHCIVWAKD 186 (563)
Q Consensus 162 ~~~~p~cti~~~p~~~~hci~~a~~ 186 (563)
|.+.-+-.|...-...+.|+.-+++
T Consensus 181 P~t~mI~~Is~d~pGvvT~ld~~rH 205 (1013)
T KOG2012|consen 181 PLTGMIASISQDNPGVVTCLDGARH 205 (1013)
T ss_pred chhhHHhhccCCCCceEEEecCccc
Confidence 7777777777665577888877765
No 50
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=9.7e-20 Score=182.05 Aligned_cols=136 Identities=25% Similarity=0.379 Sum_probs=126.3
Q ss_pred CCHHHHHHHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 008516 2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ 81 (563)
Q Consensus 2 ~~~~~q~kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~ 81 (563)
|+|++++||+++-|+||||||+|+.++..|+++|+++|.|||.|.|..|-||||---...|||.||+.+++++++++.|.
T Consensus 64 fGee~m~kl~~syVVVVG~GgVGSwv~nmL~RSG~qKi~iVDfdqVSlsSLNrHs~Atl~DVG~PK~~clkkh~skiaPw 143 (430)
T KOG2018|consen 64 FGEEGMEKLTNSYVVVVGAGGVGSWVANMLLRSGVQKIRIVDFDQVSLSSLNRHSCATLADVGTPKVMCLKKHFSKIAPW 143 (430)
T ss_pred hhhhHHHHhcCcEEEEEecCchhHHHHHHHHHhcCceEEEechhhccHhhhhhhhhhhHhhcCCchHHHHHHHHHhhCcc
Confidence 78999999999999999999999999999999999999999999999999999998889999999999999999999999
Q ss_pred ceEEEeccCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEeccc
Q 008516 82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTT 137 (563)
Q Consensus 82 v~I~~~~~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~ 137 (563)
++|++...-++.+.-.+-.+.+.|+|++|.||.+...-+-++|..+++++|.+.-.
T Consensus 144 ~eIdar~~l~~~~s~edll~gnPdFvvDciDNidtKVdLL~y~~~~~l~Viss~Ga 199 (430)
T KOG2018|consen 144 CEIDARNMLWTSSSEEDLLSGNPDFVVDCIDNIDTKVDLLEYCYNHGLKVISSTGA 199 (430)
T ss_pred ceecHHHhhcCCCchhhhhcCCCCeEeEhhhhhhhhhHHHHHHHHcCCceEeccCc
Confidence 99999887776655445566789999999999999999999999999999987533
No 51
>KOG2016 consensus NEDD8-activating complex, APP-BP1/UBA5 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=1.9e-19 Score=187.03 Aligned_cols=157 Identities=24% Similarity=0.386 Sum_probs=139.2
Q ss_pred CCHHHHHHHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 008516 2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ 81 (563)
Q Consensus 2 ~~~~~q~kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~ 81 (563)
-++++|..|..++|+++|||++|||++|||++.|+|.++++|...|+.++++.+|+...+++||+||++..+.++++||+
T Consensus 17 wge~gQ~~le~a~vCll~~~~~g~e~lKnLvl~Gigs~tvvd~~~v~~~d~g~nF~~~~~~~GksrA~a~~e~LqeLN~~ 96 (523)
T KOG2016|consen 17 WGEEGQAALESASVCLLNATPLGSEALKNLVLPGIGSFTVVDGSKVEQGDLGNNFFLDAKSIGKSRAEATLEFLQELNPS 96 (523)
T ss_pred HHHHhHhhhhhceEEEecCChhHHHHHHhhcccccccEEEEecceeeecchhhHHHHHHHhhchhHHHHHHHHHHHhChh
Confidence 36899999999999999999999999999999999999999999999999999999899999999999999999999999
Q ss_pred ceEEEeccCCCC-CcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEeccccceeeEEEEeCCCCccccccCC
Q 008516 82 MSITAHHANVKD-PKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPK 159 (563)
Q Consensus 82 v~I~~~~~~i~~-~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~G~~G~v~v~~~~~t~Cy~C~~~ 159 (563)
|+-.......+. ...+.+||.+|++|+.+--+.+....+.+.|+.+++|++.+.+.|+.|.++..+..+ .-.+.+|+
T Consensus 97 V~~~~vee~p~~Li~~~p~ff~qFtvViatnl~E~~~~kl~~~l~~~~vpll~~rs~Gl~G~iRI~ikEH-~iieshPD 174 (523)
T KOG2016|consen 97 VSGSFVEESPDFLIDNDPSFFSQFTVVIATNLNEQTLLKLAEILREANVPLLLTRSYGLAGTIRISIKEH-TIIESHPD 174 (523)
T ss_pred hhcCccccChhhhhhcCchhhheeeeeeccccchhhhhhhHHHHHhcCCceEEEeeecceEEEEEEeeec-cccccCCC
Confidence 987776655421 133578999999999998888888899999999999999999999999999998763 33343443
No 52
>KOG2337 consensus Ubiquitin activating E1 enzyme-like protein [Coenzyme transport and metabolism]
Probab=99.74 E-value=6.4e-18 Score=178.27 Aligned_cols=191 Identities=25% Similarity=0.370 Sum_probs=151.7
Q ss_pred CCHHHHHHHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCC---CchHHHHHHHHHHhh
Q 008516 2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHV---GQSKAKVARDAVLKF 78 (563)
Q Consensus 2 ~~~~~q~kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~di---Gk~Ka~va~~~l~~~ 78 (563)
+|.-..+++.+.|+|+.|||.+||.++++|...||+|||.+|..+|..||-.||.||..+|. |++||++|+++++++
T Consensus 330 vPdLnLd~is~~KcLLLGAGTLGC~VAR~Ll~WGvRhITFvDn~kVsySNPVRQsLy~FEDc~~~g~~KAe~Aa~rLk~I 409 (669)
T KOG2337|consen 330 VPDLNLDIISQTKCLLLGAGTLGCNVARNLLGWGVRHITFVDNGKVSYSNPVRQSLYTFEDCLGGGRPKAETAAQRLKEI 409 (669)
T ss_pred cCccchhhhhcceeEEecCcccchHHHHHHHhhccceEEEEecCeeeccchhhhhhhhhhhhhccCCcchHHHHHHHHHh
Confidence 57778899999999999999999999999999999999999999999999999999999997 599999999999999
Q ss_pred CCCceEEEeccCC-------CCC---------cchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEeccccceee
Q 008516 79 RPQMSITAHHANV-------KDP---------KFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQ 142 (563)
Q Consensus 79 np~v~I~~~~~~i-------~~~---------~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~G~~G~ 142 (563)
+|.++-+.+.-.| .+. .--+.+++..|+|+-.+|+.++|..-.-+|...++-+|++. .|+..+
T Consensus 410 fP~m~atG~~lsIPMpGH~I~e~~~e~~~~D~~~Le~LI~~HDviFLLtDsRESRWLPtll~a~~~KivINaA-LGFDsy 488 (669)
T KOG2337|consen 410 FPSMEATGYVLSIPMPGHPIGESLLEQTKKDLKRLEQLIKDHDVIFLLTDSRESRWLPTLLAAAKNKIVINAA-LGFDSY 488 (669)
T ss_pred CccccccceEEeccCCCCccchhhHHHHHHHHHHHHHHHhhcceEEEEeccchhhhhHHHHHhhhcceEeeee-ccccee
Confidence 9999887776555 111 01134688999999999999999999999999998888875 466655
Q ss_pred EEEE--------------------eCCCCccccccCCCCCCC-------CCceeeccCCCCchhHHHHHHHHHHHHHhC
Q 008516 143 VTVH--------------------VKGKTECYECQPKPAPKT-------YPVCTITSTPSKFVHCIVWAKDLLFAKLFG 194 (563)
Q Consensus 143 v~v~--------------------~~~~t~Cy~C~~~~~~~~-------~p~cti~~~p~~~~hci~~a~~~lf~~lf~ 194 (563)
+..- -+.+-.||.|..--+|.. =..||+.. |....-.-..|.|++-..+.+
T Consensus 489 lVMRHG~~~~~~~~d~q~s~~~~i~~~qLGCYFCnDV~AP~nSl~DRTLDQqCTVtR-PG~a~IA~alAVELlvslLQh 566 (669)
T KOG2337|consen 489 LVMRHGTGRKEASDDGQSSDLKCINGDQLGCYFCNDVVAPGNSLTDRTLDQQCTVTR-PGVANIASALAVELLVSLLQH 566 (669)
T ss_pred EEEecCCCCcccccccccccccccCcccceeEeEcceecCCCcccccchhheeeccC-CchhHHHHHHHHHHHHHHHhC
Confidence 5433 123567999986544321 25799875 555444567888844444443
No 53
>PF10585 UBA_e1_thiolCys: Ubiquitin-activating enzyme active site ; InterPro: IPR019572 Ubiquitin-activating enzyme (E1 enzyme) activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin-conjugating enzymes (E2) []. This domain carries the last of five conserved cysteines that is part of the active site of the enzyme, responsible for ubiquitin thiolester complex formation, the active site being represented by the sequence motif PICTLKNFP []. Not all proteins in this entry contain a functional active site.; PDB: 3CMM_A 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B 2PX9_A 1Z7L_A 3GZN_D 3DBL_F 1R4N_H ....
Probab=99.52 E-value=2.7e-15 Score=110.88 Aligned_cols=45 Identities=62% Similarity=1.249 Sum_probs=39.8
Q ss_pred CCCccccccCCCCCCCCCceeeccCCCCchhHHHHHHHHHHHHHhC
Q 008516 149 GKTECYECQPKPAPKTYPVCTITSTPSKFVHCIVWAKDLLFAKLFG 194 (563)
Q Consensus 149 ~~t~Cy~C~~~~~~~~~p~cti~~~p~~~~hci~~a~~~lf~~lf~ 194 (563)
+.|+||+|.+++.++++|+|||||+|+.++|||+||++ +|+.+|+
T Consensus 1 ~~Tecy~c~~~~~~~~~P~CTir~~P~~~~HcI~wAk~-~f~~~F~ 45 (45)
T PF10585_consen 1 HVTECYECSPDPPEKSYPVCTIRNFPRTPEHCIEWAKD-LFEELFG 45 (45)
T ss_dssp TTS--TTCSGGGSSSSEEHHHHHTS-SSHHHHHHHHHH-HHHHHHT
T ss_pred CccccccCCCCCCCCCCCcchhhcCCCCchHHHHHHHH-HHHHHhC
Confidence 47999999999999999999999999999999999997 8999996
No 54
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=99.51 E-value=4.8e-14 Score=154.51 Aligned_cols=136 Identities=24% Similarity=0.384 Sum_probs=115.1
Q ss_pred HHHHHHHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCce
Q 008516 4 ERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMS 83 (563)
Q Consensus 4 ~~~q~kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~ 83 (563)
....++-+++||+|+|.||+|+.++.+|+.+|+++|+.+|.|.+ .||++| ||+. ++.|++ +||+++
T Consensus 121 ~~rF~~qR~akVlVlG~Gg~~s~lv~sL~~sG~~~I~~vd~D~v-~SNlnR--------IgEl-~e~A~~----~n~~v~ 186 (637)
T TIGR03693 121 ALKFELSRNAKILAAGSGDFLTKLVRSLIDSGFPRFHAIVTDAE-EHALDR--------IHEL-AEIAEE----TDDALL 186 (637)
T ss_pred hhhhhhhhcccEEEEecCchHHHHHHHHHhcCCCcEEEEecccc-chhhhH--------HHHH-HHHHHH----hCCCCc
Confidence 44556669999999999999999999999999999999999999 999999 8876 666555 999999
Q ss_pred EEEeccCCCCCcchHhhcccccEEEEccCC--HHHHHHHHHHHHhcC---CCEEEeccccceeeEEEEeCCCCcccccc
Q 008516 84 ITAHHANVKDPKFNVEFFKQFNVVLNGLDN--LDARRHVNRLCLAAD---VPLVESGTTGFLGQVTVHVKGKTECYECQ 157 (563)
Q Consensus 84 I~~~~~~i~~~~~~~~~~~~~dvVi~alDn--~~ar~~in~~c~~~~---~pli~~gt~G~~G~v~v~~~~~t~Cy~C~ 157 (563)
|+.+.. +....-.+.++++|+|+...|+ ..-.+++|+.|++.+ +|++-+|..++.|-++. |+.++|++|.
T Consensus 187 v~~i~~--~~~~dl~ev~~~~DiVi~vsDdy~~~~Lr~lN~acvkegk~~IPai~~G~~~liGPlft--PgkTGCWeCa 261 (637)
T TIGR03693 187 VQEIDF--AEDQHLHEAFEPADWVLYVSDNGDIDDLHALHAFCKEEGKGFIPAICLKQVGLAGPVFQ--QHGDECFEAA 261 (637)
T ss_pred eEeccC--CcchhHHHhhcCCcEEEEECCCCChHHHHHHHHHHHHcCCCeEEEEEcccceeecceEC--CCCCcHHHHH
Confidence 999875 2233346778999999999995 445678999999999 56677788888887766 9999999994
No 55
>PF14732 UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquitin-like domain; PDB: 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B.
Probab=99.28 E-value=2.4e-12 Score=109.12 Aligned_cols=77 Identities=27% Similarity=0.401 Sum_probs=60.5
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhcCCCcCeEEecCeEEEeeCCCchHHHHHHhhhhhhcchhhhcCcccCCCcceeeccCC
Q 008516 439 SLEINTSRSKLRDFVEKIVKAKLGINFPLIMHGSNLLYEVGDDLDEVEVANYAANLEKVKIQASSVTLCSSPPDFCCSCN 518 (563)
Q Consensus 439 ~l~i~~~~~TL~~li~~~lk~~~~l~~~~i~~g~~~LY~~~~~~~~~~~~~~~~nl~k~L~el~~gv~~g~~~~~~~~~~ 518 (563)
++.+|.+++||++|++.|+|+++||..|.|+.++++||++++. .+++|++|+|++| |+++|++|.+.+...
T Consensus 1 tv~~d~~~~TL~~lv~~Vlk~~Lg~~~P~v~~~~~ilyd~de~-------~~~~~l~k~L~el--gi~~gs~L~v~D~~q 71 (87)
T PF14732_consen 1 TVKVDTKKMTLGDLVEKVLKKKLGMNEPDVSVGGTILYDSDEE-------EYDDNLPKKLSEL--GIVNGSILTVDDFDQ 71 (87)
T ss_dssp EEEE-TTT-BHHHHHHHCCCCCS--SSEEEEES-EEEE-SSSS-------SSTTCTTSBGGGG--T--TT-EEEEEETTT
T ss_pred CEEEechhCcHHHHHHHHHHhccCCCCCEEEeCCCEEEcCCcc-------hhhhcccCChhHc--CCCCCCEEEEEEcCC
Confidence 4678899999999999999999999999999999999999862 4789999999999 999999999999988
Q ss_pred Ccccee
Q 008516 519 DADVLL 524 (563)
Q Consensus 519 ~~d~~~ 524 (563)
++.+-+
T Consensus 72 ~~~~~i 77 (87)
T PF14732_consen 72 DFNLEI 77 (87)
T ss_dssp TEEEEE
T ss_pred CcEEEE
Confidence 765544
No 56
>PF09358 UBA_e1_C: Ubiquitin-activating enzyme e1 C-terminal domain; InterPro: IPR018965 This presumed domain found at the C terminus of Ubiquitin-activating enzyme e1 proteins is functionally uncharacterised. ; PDB: 3CMM_A.
Probab=99.13 E-value=1.5e-11 Score=111.18 Aligned_cols=90 Identities=20% Similarity=0.281 Sum_probs=59.6
Q ss_pred cceeeecccccccccccccCCCCCCCCcccCCCccE--EEEEcCCCCCHHHHHHHHHHHhcCCCcCeEEecCeEEEeeCC
Q 008516 403 YRMTYCLEHITKKMLLMPVEPYEPNKSCYVCSETPL--SLEINTSRSKLRDFVEKIVKAKLGINFPLIMHGSNLLYEVGD 480 (563)
Q Consensus 403 ~r~~f~~~~~~~~~~~~p~~~~~pn~~C~vC~~~~~--~l~i~~~~~TL~~li~~~lk~~~~l~~~~i~~g~~~LY~~~~ 480 (563)
|||+|+|++.+...+..|.+ |....+.-..+++ +++++. ++||++|+++ ++++||+++.||++|+++||+.+
T Consensus 1 yrN~F~NLAlP~~~fsEP~~---~~k~k~~~~~~T~WDr~~v~~-~~Tl~~li~~-~~~~~~lev~ml~~g~~~LY~~f- 74 (125)
T PF09358_consen 1 YRNSFLNLALPFFSFSEPIP---APKTKYNDKEWTLWDRIEVNG-DMTLQELIDY-FKEKYGLEVTMLSQGVSLLYSSF- 74 (125)
T ss_dssp --EEEEETTTTEEEEE---B-----EEEETTEEETTT-EEEEES---BHHHHHHH-HHHTTS-EEEEEEETTEEEEETT-
T ss_pred CccEEEEcCccceeeeeccC---CCceEecCccccceeEEEEcC-CCCHHHHHHH-HHHHhCceEEEEEeCCEEEEecC-
Confidence 79999999965545555443 3333331113444 456664 7999999999 79999999999999999999988
Q ss_pred CchHHHHHHhhhhhhcchhhhcC
Q 008516 481 DLDEVEVANYAANLEKVKIQASS 503 (563)
Q Consensus 481 ~~~~~~~~~~~~nl~k~L~el~~ 503 (563)
+.+ ..+++|++++++|..
T Consensus 75 ~~~-----~~~~rl~~~i~elv~ 92 (125)
T PF09358_consen 75 PPP-----KHKERLKMPISELVE 92 (125)
T ss_dssp -HH-----HHHHHTTSBHHHHHH
T ss_pred Chh-----hhHHHhCCcHHHHHH
Confidence 322 357899999999954
No 57
>PF08825 E2_bind: E2 binding domain; InterPro: IPR014929 E1 and E2 enzymes play a central role in ubiquitin and ubiquitin-like protein transfer cascades. This is an E2 binding domain that is found on NEDD8 activating E1 enzyme. The protein resembles ubiquitin, and recruits the catalytic core of the E2 enzyme Ubc12 in a similar manner to that in which ubiquitin interacts with ubiquitin binding domains []. ; GO: 0005524 ATP binding, 0016881 acid-amino acid ligase activity, 0045116 protein neddylation; PDB: 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H 1YOV_B 3FN1_A ....
Probab=98.36 E-value=3.8e-07 Score=76.73 Aligned_cols=69 Identities=14% Similarity=0.147 Sum_probs=56.0
Q ss_pred EEEcCCCCCHHHHHHHHHHHh--cCCCcCeEEecCeEEEeeCCCchHHHHHHhhhhhhcchhhhcCcccCCCcceeecc
Q 008516 440 LEINTSRSKLRDFVEKIVKAK--LGINFPLIMHGSNLLYEVGDDLDEVEVANYAANLEKVKIQASSVTLCSSPPDFCCS 516 (563)
Q Consensus 440 l~i~~~~~TL~~li~~~lk~~--~~l~~~~i~~g~~~LY~~~~~~~~~~~~~~~~nl~k~L~el~~gv~~g~~~~~~~~ 516 (563)
++++ .++||++||+. +.++ +.|..|+|+.+++.||.... ++.+++++.||.|+|.|| +.+|..+.|++.
T Consensus 1 i~v~-~~~TL~~lid~-L~~~~~~qlk~PSlt~~~k~LYm~~p---p~Lee~Tr~NL~k~l~eL---~~~g~ei~VtD~ 71 (84)
T PF08825_consen 1 IEVS-PSWTLQDLIDS-LCEKPEFQLKKPSLTTANKTLYMQSP---PSLEEATRPNLSKKLKEL---LSDGEEITVTDP 71 (84)
T ss_dssp EEES-TTSBSHHHHHH-HHHSTTT--SS-EEESSEEEEEESSS---HHHHHHTGGGGSSBTTTT---HHSSEEEEEEET
T ss_pred CCcC-ccchHHHHHHH-HHhChhhhcCCCcccCCCceEEEeCC---HHHHHHhhhhhhhhHHHH---hcCCCEEEEECC
Confidence 3555 57999999999 5555 89999999999999998864 577889999999999999 789998888654
No 58
>TIGR03882 cyclo_dehyd_2 bacteriocin biosynthesis cyclodehydratase domain. This model describes a ThiF-like domain of a fusion protein found in clusters associated with the production of TOMMs (thiazole/oxazole-modified microcins), small bacteriocins with characteristic heterocycle modifications. This domain is presumed to act as a cyclodehydratase, as do members of the SagC family modeled by TIGR03603.
Probab=98.04 E-value=4.7e-06 Score=81.19 Aligned_cols=96 Identities=24% Similarity=0.288 Sum_probs=75.0
Q ss_pred CHHHHHHHcCCcEEEECCcHHHHH-HHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 008516 3 SERQLEAIKGAKVLMVGAGGIGCE-LLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ 81 (563)
Q Consensus 3 ~~~~q~kL~~~~VlvvGaGgiG~e-llknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~ 81 (563)
+.+.++++++.+|.|+|.|+.|++ ++..|+.+|++.+. + .+
T Consensus 96 ~~~a~~~l~~~~V~V~~~G~~~~~~l~~aLaa~Gv~~~~------------------~-------------------~a- 137 (193)
T TIGR03882 96 PAAALERLRQLTVTVLSFGEGGAAALAAALAAAGIRIAP------------------S-------------------EA- 137 (193)
T ss_pred HHHHHHHHhcCcEEEEecCCCcHHHHHHHHHHcCCCccC------------------C-------------------CC-
Confidence 456799999999999999999999 99999999998654 0 01
Q ss_pred ceEEEeccCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEeccccceeeEEEE-eCCCCcccccc
Q 008516 82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVH-VKGKTECYECQ 157 (563)
Q Consensus 82 v~I~~~~~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~G~~G~v~v~-~~~~t~Cy~C~ 157 (563)
..++|+.......-...+|+..++.++|++-....|..+.+.+. .|+.|+|+.|.
T Consensus 138 ---------------------~l~vVl~~Dyl~p~L~~~n~~~l~~~~~~l~v~~~~~~~~~gp~~~p~~~~c~~c~ 193 (193)
T TIGR03882 138 ---------------------DLTVVLTDDYLDPELAAINQRALAAGRPWLLVKPGGVQPWIGPLFKPGKTGCWHCL 193 (193)
T ss_pred ---------------------CEEEEEeCCCCChHHHHHHHHHHHcCCceEEEEeCCceEEECCeecCCCCcccccC
Confidence 12334433222233456899999999999999999999999875 69999999995
No 59
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=97.84 E-value=7.4e-05 Score=79.85 Aligned_cols=101 Identities=23% Similarity=0.399 Sum_probs=74.9
Q ss_pred CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccCCC
Q 008516 13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVK 92 (563)
Q Consensus 13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~i~ 92 (563)
.+|+|+|||++|+.++.+|++.|.++|++.|... .|+. ++...... ++++..-++.
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~-------------------~~~~----~i~~~~~~-~v~~~~vD~~ 57 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSK-------------------EKCA----RIAELIGG-KVEALQVDAA 57 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCH-------------------HHHH----HHHhhccc-cceeEEeccc
Confidence 5899999999999999999999999999987211 1222 22222111 6777776665
Q ss_pred CCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEecccc
Q 008516 93 DPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTG 138 (563)
Q Consensus 93 ~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~G 138 (563)
+..-..+.++++|+||++..-.-.+ .+-+.|.+.++++++.....
T Consensus 58 d~~al~~li~~~d~VIn~~p~~~~~-~i~ka~i~~gv~yvDts~~~ 102 (389)
T COG1748 58 DVDALVALIKDFDLVINAAPPFVDL-TILKACIKTGVDYVDTSYYE 102 (389)
T ss_pred ChHHHHHHHhcCCEEEEeCCchhhH-HHHHHHHHhCCCEEEcccCC
Confidence 5444568899999999998865544 67788999999999987543
No 60
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=97.73 E-value=4.2e-05 Score=83.00 Aligned_cols=32 Identities=41% Similarity=0.581 Sum_probs=30.3
Q ss_pred cCCcccCCCcHhHHHHHHHHHHHHHHHcCCCC
Q 008516 329 IGNLSFDKDDQLAVEFVTAAANIRAASFGISL 360 (563)
Q Consensus 329 ~~~l~FdKDDd~h~dFV~AasNLRA~~f~I~~ 360 (563)
..|++||.+|+.|++||.++|||||.+|+|+.
T Consensus 245 P~p~~fd~~~~~h~~fv~~~a~l~a~~~~~~~ 276 (435)
T cd01490 245 PTPLEFDVNNPLHLDFVLAAANLYAEVYGIPG 276 (435)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCc
Confidence 56899999999999999999999999999986
No 61
>COG4015 Predicted dinucleotide-utilizing enzyme of the ThiF/HesA family [General function prediction only]
Probab=97.66 E-value=0.0003 Score=65.59 Aligned_cols=117 Identities=15% Similarity=0.252 Sum_probs=92.2
Q ss_pred CCcEEEECCcHHHHHHHHHHH---HhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEec
Q 008516 12 GAKVLMVGAGGIGCELLKTLA---LSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH 88 (563)
Q Consensus 12 ~~~VlvvGaGgiG~ellknLa---l~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~ 88 (563)
...|.++|||.+|--++-+|. +.|..+|.++|...|+..++--- ---..+|.+|++-++ ++.+-.+.-.|++..
T Consensus 18 rGeV~l~G~GRLG~Rval~Lle~HRGGperi~v~Dgqrve~dDiihr--r~Ga~~GEyKv~Fi~-rl~~~~f~r~V~a~p 94 (217)
T COG4015 18 RGEVSLIGCGRLGVRVALDLLEVHRGGPERIYVFDGQRVEEDDIIHR--RLGAKVGEYKVDFIK-RLGRVHFGRRVEAFP 94 (217)
T ss_pred CceEEEEeccchhHHHHHHHHHHhcCCCeEEEEecCcccCchhhHHH--HhCCCcchhHHHHHH-HhCcCCCCceeeccc
Confidence 345999999999999999997 56888999999999999998311 113579999999765 456677888999999
Q ss_pred cCCCCCcchHhhcccccEEEEc---cCCHHHHHHHHHHHHhcCCCEEEe
Q 008516 89 ANVKDPKFNVEFFKQFNVVLNG---LDNLDARRHVNRLCLAADVPLVES 134 (563)
Q Consensus 89 ~~i~~~~~~~~~~~~~dvVi~a---lDn~~ar~~in~~c~~~~~pli~~ 134 (563)
+++++++ ...+++ |+|+.+ -|+...-..+-+.|++.++.-|..
T Consensus 95 E~it~dN--lhll~g-DVvvi~IAGGdT~PvTaaii~ya~~rG~~TisT 140 (217)
T COG4015 95 ENITKDN--LHLLKG-DVVVICIAGGDTIPVTAAIINYAKERGIKTIST 140 (217)
T ss_pred ccccccc--hhhhcC-CEEEEEecCCCcchhHHHHHHHHHHcCceEeec
Confidence 9997653 456666 776554 577788888889999999876654
No 62
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=97.62 E-value=0.00021 Score=73.86 Aligned_cols=77 Identities=21% Similarity=0.316 Sum_probs=60.1
Q ss_pred HcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEecc
Q 008516 10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA 89 (563)
Q Consensus 10 L~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~ 89 (563)
++.++|+|+|+||.|..++..|+..|+++|+|+|.+ ..|++.+++.+.+..+.+.+....
T Consensus 125 ~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~-------------------~~ka~~la~~l~~~~~~~~~~~~~- 184 (284)
T PRK12549 125 ASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVD-------------------PARAAALADELNARFPAARATAGS- 184 (284)
T ss_pred ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCC-------------------HHHHHHHHHHHHhhCCCeEEEecc-
Confidence 566799999999999999999999999999999754 268888888887777765543321
Q ss_pred CCCCCcchHhhcccccEEEEccC
Q 008516 90 NVKDPKFNVEFFKQFNVVLNGLD 112 (563)
Q Consensus 90 ~i~~~~~~~~~~~~~dvVi~alD 112 (563)
++ .+.+.++|+||+|+.
T Consensus 185 ~~------~~~~~~aDiVInaTp 201 (284)
T PRK12549 185 DL------AAALAAADGLVHATP 201 (284)
T ss_pred ch------HhhhCCCCEEEECCc
Confidence 11 234578999999964
No 63
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=97.61 E-value=0.00017 Score=66.09 Aligned_cols=80 Identities=26% Similarity=0.426 Sum_probs=57.9
Q ss_pred HHHHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEE
Q 008516 7 LEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITA 86 (563)
Q Consensus 7 q~kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~ 86 (563)
...+.+++++|+|+||.|..+++.|...|+++|+|+. |. ..|++.+++.+ +..++..
T Consensus 7 ~~~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~n----------Rt---------~~ra~~l~~~~----~~~~~~~ 63 (135)
T PF01488_consen 7 FGDLKGKRVLVIGAGGAARAVAAALAALGAKEITIVN----------RT---------PERAEALAEEF----GGVNIEA 63 (135)
T ss_dssp HSTGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEE----------SS---------HHHHHHHHHHH----TGCSEEE
T ss_pred cCCcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEE----------CC---------HHHHHHHHHHc----Cccccce
Confidence 3468999999999999999999999999999999975 32 25677666666 3333433
Q ss_pred eccCCCCCcchHhhcccccEEEEccCCH
Q 008516 87 HHANVKDPKFNVEFFKQFNVVLNGLDNL 114 (563)
Q Consensus 87 ~~~~i~~~~~~~~~~~~~dvVi~alDn~ 114 (563)
..-. + -.+.+.++|+||+|+...
T Consensus 64 ~~~~--~---~~~~~~~~DivI~aT~~~ 86 (135)
T PF01488_consen 64 IPLE--D---LEEALQEADIVINATPSG 86 (135)
T ss_dssp EEGG--G---HCHHHHTESEEEE-SSTT
T ss_pred eeHH--H---HHHHHhhCCeEEEecCCC
Confidence 3211 0 125678999999998754
No 64
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=97.50 E-value=0.00093 Score=65.63 Aligned_cols=93 Identities=15% Similarity=0.164 Sum_probs=64.8
Q ss_pred HHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEec
Q 008516 9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH 88 (563)
Q Consensus 9 kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~ 88 (563)
.|.+++|+|||.|.+|...++.|...| .+|++++.+. .+ .+.+.. +.-.+....
T Consensus 7 ~l~~k~vLVIGgG~va~~ka~~Ll~~g-a~V~VIs~~~------~~---------------~l~~l~----~~~~i~~~~ 60 (202)
T PRK06718 7 DLSNKRVVIVGGGKVAGRRAITLLKYG-AHIVVISPEL------TE---------------NLVKLV----EEGKIRWKQ 60 (202)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCC-CeEEEEcCCC------CH---------------HHHHHH----hCCCEEEEe
Confidence 378999999999999999999999999 6899986421 00 011111 111233322
Q ss_pred cCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEE
Q 008516 89 ANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVE 133 (563)
Q Consensus 89 ~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~ 133 (563)
.. +....+.++|+||.|+++.+.-..+.+.| ..++++-.
T Consensus 61 ~~-----~~~~~l~~adlViaaT~d~elN~~i~~~a-~~~~lvn~ 99 (202)
T PRK06718 61 KE-----FEPSDIVDAFLVIAATNDPRVNEQVKEDL-PENALFNV 99 (202)
T ss_pred cC-----CChhhcCCceEEEEcCCCHHHHHHHHHHH-HhCCcEEE
Confidence 22 33455789999999999999999998899 45665433
No 65
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=97.35 E-value=0.0005 Score=60.06 Aligned_cols=89 Identities=18% Similarity=0.291 Sum_probs=63.8
Q ss_pred HHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEec
Q 008516 9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH 88 (563)
Q Consensus 9 kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~ 88 (563)
.|++.+|+|||.|.+|..=++.|..+| .+++++..+. +. +. ..++ .+.
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~g-A~v~vis~~~-~~---------------------~~-------~~i~--~~~ 51 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEAG-AKVTVISPEI-EF---------------------SE-------GLIQ--LIR 51 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCCT-BEEEEEESSE-HH---------------------HH-------TSCE--EEE
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCC-CEEEEECCch-hh---------------------hh-------hHHH--HHh
Confidence 478999999999999999999999999 5899998665 00 00 1122 222
Q ss_pred cCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEec
Q 008516 89 ANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESG 135 (563)
Q Consensus 89 ~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~g 135 (563)
.. +. +.+.++++|+.|+++.+....+.+.|++.++|+-.+.
T Consensus 52 ~~-----~~-~~l~~~~lV~~at~d~~~n~~i~~~a~~~~i~vn~~D 92 (103)
T PF13241_consen 52 RE-----FE-EDLDGADLVFAATDDPELNEAIYADARARGILVNVVD 92 (103)
T ss_dssp SS------G-GGCTTESEEEE-SS-HHHHHHHHHHHHHTTSEEEETT
T ss_pred hh-----HH-HHHhhheEEEecCCCHHHHHHHHHHHhhCCEEEEECC
Confidence 22 22 4578899999999999999999999999999765543
No 66
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=97.22 E-value=0.0043 Score=61.10 Aligned_cols=96 Identities=19% Similarity=0.240 Sum_probs=71.1
Q ss_pred HcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEecc
Q 008516 10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA 89 (563)
Q Consensus 10 L~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~ 89 (563)
|++++|+|||.|.+|..-++.|...|. ++++++.+.- ..+.+ +.+. -+|+.+..
T Consensus 7 l~gk~vlVvGgG~va~rk~~~Ll~~ga-~VtVvsp~~~---------------------~~l~~-l~~~---~~i~~~~~ 60 (205)
T TIGR01470 7 LEGRAVLVVGGGDVALRKARLLLKAGA-QLRVIAEELE---------------------SELTL-LAEQ---GGITWLAR 60 (205)
T ss_pred cCCCeEEEECcCHHHHHHHHHHHHCCC-EEEEEcCCCC---------------------HHHHH-HHHc---CCEEEEeC
Confidence 678999999999999999999999995 7999986421 00111 1111 14555544
Q ss_pred CCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEecc
Q 008516 90 NVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGT 136 (563)
Q Consensus 90 ~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt 136 (563)
.. ....+.++++||.|+++.+....+-..|+..++|+-.++-
T Consensus 61 ~~-----~~~dl~~~~lVi~at~d~~ln~~i~~~a~~~~ilvn~~d~ 102 (205)
T TIGR01470 61 CF-----DADILEGAFLVIAATDDEELNRRVAHAARARGVPVNVVDD 102 (205)
T ss_pred CC-----CHHHhCCcEEEEECCCCHHHHHHHHHHHHHcCCEEEECCC
Confidence 43 3455789999999999988888999999999998855543
No 67
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=97.02 E-value=0.0019 Score=69.34 Aligned_cols=96 Identities=26% Similarity=0.454 Sum_probs=65.9
Q ss_pred EEEECCcHHHHHHHHHHHHhCC-CeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccCCCC
Q 008516 15 VLMVGAGGIGCELLKTLALSGF-QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKD 93 (563)
Q Consensus 15 VlvvGaGgiG~ellknLal~Gv-g~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~i~~ 93 (563)
|+|+|+|.+|..+++.|+..+- .++++.|.+. .|++.+++.+ ...++....-++.+
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~-------------------~~~~~~~~~~----~~~~~~~~~~d~~~ 57 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNP-------------------EKAERLAEKL----LGDRVEAVQVDVND 57 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSH-------------------HHHHHHHT------TTTTEEEEE--TTT
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCH-------------------HHHHHHHhhc----cccceeEEEEecCC
Confidence 7899999999999999999884 4899987332 2333333322 34467777766755
Q ss_pred CcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEe
Q 008516 94 PKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVES 134 (563)
Q Consensus 94 ~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~ 134 (563)
...-.+++++.|+||+|+... ....+-+.|.+.+++++|.
T Consensus 58 ~~~l~~~~~~~dvVin~~gp~-~~~~v~~~~i~~g~~yvD~ 97 (386)
T PF03435_consen 58 PESLAELLRGCDVVINCAGPF-FGEPVARACIEAGVHYVDT 97 (386)
T ss_dssp HHHHHHHHTTSSEEEE-SSGG-GHHHHHHHHHHHT-EEEES
T ss_pred HHHHHHHHhcCCEEEECCccc-hhHHHHHHHHHhCCCeecc
Confidence 443467899999999999765 5667889999999999994
No 68
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=97.02 E-value=0.0066 Score=57.22 Aligned_cols=85 Identities=14% Similarity=0.231 Sum_probs=61.3
Q ss_pred HHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEec
Q 008516 9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH 88 (563)
Q Consensus 9 kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~ 88 (563)
.|++.+|+|||.|.+|...++.|...|. ++++|+.+..+ .+.++ +. ++...
T Consensus 10 ~l~~~~vlVvGGG~va~rka~~Ll~~ga-~V~VIsp~~~~-------------------------~l~~l-~~--i~~~~ 60 (157)
T PRK06719 10 NLHNKVVVIIGGGKIAYRKASGLKDTGA-FVTVVSPEICK-------------------------EMKEL-PY--ITWKQ 60 (157)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCccCH-------------------------HHHhc-cC--cEEEe
Confidence 4789999999999999999999999996 78998654211 01111 11 22222
Q ss_pred cCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhc
Q 008516 89 ANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAA 127 (563)
Q Consensus 89 ~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~ 127 (563)
. .+....+.++|+|+.|+|+.+.-..+.+.|...
T Consensus 61 ~-----~~~~~dl~~a~lViaaT~d~e~N~~i~~~a~~~ 94 (157)
T PRK06719 61 K-----TFSNDDIKDAHLIYAATNQHAVNMMVKQAAHDF 94 (157)
T ss_pred c-----ccChhcCCCceEEEECCCCHHHHHHHHHHHHHC
Confidence 2 233455789999999999999888888888764
No 69
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=96.86 E-value=0.011 Score=58.81 Aligned_cols=96 Identities=18% Similarity=0.245 Sum_probs=69.7
Q ss_pred HcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEecc
Q 008516 10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA 89 (563)
Q Consensus 10 L~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~ 89 (563)
+++.+|+|||.|.+|..=++.|...|. +||||-++.-+ . +.+ +.+ ++ +|+.+..
T Consensus 23 ~~~~~VLVVGGG~VA~RK~~~Ll~~gA-~VtVVap~i~~------------------e---l~~-l~~-~~--~i~~~~r 76 (223)
T PRK05562 23 SNKIKVLIIGGGKAAFIKGKTFLKKGC-YVYILSKKFSK------------------E---FLD-LKK-YG--NLKLIKG 76 (223)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCCCH------------------H---HHH-HHh-CC--CEEEEeC
Confidence 567899999999999999999999994 79998654210 0 001 111 22 3444443
Q ss_pred CCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEecc
Q 008516 90 NVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGT 136 (563)
Q Consensus 90 ~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt 136 (563)
. |....+.++++||.|+|+.+.-..+.+.|...++++..+..
T Consensus 77 ~-----~~~~dl~g~~LViaATdD~~vN~~I~~~a~~~~~lvn~vd~ 118 (223)
T PRK05562 77 N-----YDKEFIKDKHLIVIATDDEKLNNKIRKHCDRLYKLYIDCSD 118 (223)
T ss_pred C-----CChHHhCCCcEEEECCCCHHHHHHHHHHHHHcCCeEEEcCC
Confidence 3 34556789999999999999999999999999988776543
No 70
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=96.63 E-value=0.0081 Score=62.23 Aligned_cols=85 Identities=19% Similarity=0.302 Sum_probs=55.0
Q ss_pred HcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEecc
Q 008516 10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA 89 (563)
Q Consensus 10 L~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~ 89 (563)
+++++++|+|+||+|..++..|+..|+.+|+|++.+. -...|++.+++.+.+..+.+.+...
T Consensus 124 ~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~----------------~~~~~a~~l~~~l~~~~~~~~~~~~-- 185 (289)
T PRK12548 124 VKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD----------------DFYERAEQTAEKIKQEVPECIVNVY-- 185 (289)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc----------------hHHHHHHHHHHHHhhcCCCceeEEe--
Confidence 4567899999999999999999999999999986321 0123566666666555454444322
Q ss_pred CCCCCcchHhhcccccEEEEccC
Q 008516 90 NVKDPKFNVEFFKQFNVVLNGLD 112 (563)
Q Consensus 90 ~i~~~~~~~~~~~~~dvVi~alD 112 (563)
++.+...-.+.+..+|+|||++-
T Consensus 186 d~~~~~~~~~~~~~~DilINaTp 208 (289)
T PRK12548 186 DLNDTEKLKAEIASSDILVNATL 208 (289)
T ss_pred chhhhhHHHhhhccCCEEEEeCC
Confidence 22211111234566788888763
No 71
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=96.52 E-value=0.0077 Score=62.16 Aligned_cols=77 Identities=23% Similarity=0.304 Sum_probs=52.6
Q ss_pred HcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEecc
Q 008516 10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA 89 (563)
Q Consensus 10 L~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~ 89 (563)
+++++|+|+|+||.|..++..|+..|+++|+|++.+ ..|++.+++.+.... .+.....
T Consensus 123 ~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt-------------------~~ka~~La~~~~~~~---~~~~~~~ 180 (282)
T TIGR01809 123 LAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRN-------------------PDKLSRLVDLGVQVG---VITRLEG 180 (282)
T ss_pred cCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCC-------------------HHHHHHHHHHhhhcC---cceeccc
Confidence 467899999999999999999999999999998532 247777766654321 1211110
Q ss_pred CCCCCcchHhhcccccEEEEccC
Q 008516 90 NVKDPKFNVEFFKQFNVVLNGLD 112 (563)
Q Consensus 90 ~i~~~~~~~~~~~~~dvVi~alD 112 (563)
. + . ......++|+||+|+-
T Consensus 181 -~-~-~-~~~~~~~~DiVInaTp 199 (282)
T TIGR01809 181 -D-S-G-GLAIEKAAEVLVSTVP 199 (282)
T ss_pred -h-h-h-hhhcccCCCEEEECCC
Confidence 0 0 0 0133467999999975
No 72
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=96.50 E-value=0.0093 Score=61.65 Aligned_cols=79 Identities=23% Similarity=0.352 Sum_probs=54.4
Q ss_pred HcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEecc
Q 008516 10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA 89 (563)
Q Consensus 10 L~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~ 89 (563)
+.+++++|+|+||.|..++-.|+..|+.+|+|+|.+ ..|++.+++.+....+...+....
T Consensus 125 ~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~-------------------~~ka~~La~~~~~~~~~~~~~~~~- 184 (283)
T PRK14027 125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLD-------------------TSRAQALADVINNAVGREAVVGVD- 184 (283)
T ss_pred cCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCC-------------------HHHHHHHHHHHhhccCcceEEecC-
Confidence 456789999999999999999999999999998633 247777777765443332222211
Q ss_pred CCCCCcchHhhcccccEEEEccC
Q 008516 90 NVKDPKFNVEFFKQFNVVLNGLD 112 (563)
Q Consensus 90 ~i~~~~~~~~~~~~~dvVi~alD 112 (563)
.. .. .+...++|+||||+.
T Consensus 185 -~~--~~-~~~~~~~divINaTp 203 (283)
T PRK14027 185 -AR--GI-EDVIAAADGVVNATP 203 (283)
T ss_pred -Hh--HH-HHHHhhcCEEEEcCC
Confidence 10 00 123467899999874
No 73
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=96.42 E-value=0.0064 Score=65.66 Aligned_cols=77 Identities=27% Similarity=0.347 Sum_probs=59.1
Q ss_pred HHHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEe
Q 008516 8 EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH 87 (563)
Q Consensus 8 ~kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~ 87 (563)
..|.+++|+|||+|-+|.-++++|...|+.+|+|. ||++ .||+-+++.+. .++...
T Consensus 174 ~~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~Ia----------NRT~---------erA~~La~~~~-----~~~~~l 229 (414)
T COG0373 174 GSLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIA----------NRTL---------ERAEELAKKLG-----AEAVAL 229 (414)
T ss_pred cccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEE----------cCCH---------HHHHHHHHHhC-----CeeecH
Confidence 34788899999999999999999999999999995 6764 47777777664 222222
Q ss_pred ccCCCCCcchHhhcccccEEEEccCCHH
Q 008516 88 HANVKDPKFNVEFFKQFNVVLNGLDNLD 115 (563)
Q Consensus 88 ~~~i~~~~~~~~~~~~~dvVi~alDn~~ 115 (563)
. .-.+++..+|+||.++..+.
T Consensus 230 ~-------el~~~l~~~DvVissTsa~~ 250 (414)
T COG0373 230 E-------ELLEALAEADVVISSTSAPH 250 (414)
T ss_pred H-------HHHHhhhhCCEEEEecCCCc
Confidence 1 12467899999999987644
No 74
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=96.28 E-value=0.015 Score=59.80 Aligned_cols=74 Identities=20% Similarity=0.373 Sum_probs=52.1
Q ss_pred HcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEecc
Q 008516 10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA 89 (563)
Q Consensus 10 L~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~ 89 (563)
+.+++|+|+|+||+|..+++.|...|+.+|++++.+ ..|++.+++.+....+ +.+ ..
T Consensus 121 ~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~-------------------~~~a~~l~~~~~~~~~-~~~---~~ 177 (278)
T PRK00258 121 LKGKRILILGAGGAARAVILPLLDLGVAEITIVNRT-------------------VERAEELAKLFGALGK-AEL---DL 177 (278)
T ss_pred CCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCC-------------------HHHHHHHHHHhhhccc-eee---cc
Confidence 567899999999999999999999999999998632 2356656655543221 121 10
Q ss_pred CCCCCcchHhhcccccEEEEccC
Q 008516 90 NVKDPKFNVEFFKQFNVVLNGLD 112 (563)
Q Consensus 90 ~i~~~~~~~~~~~~~dvVi~alD 112 (563)
. ..+.+.++|+||+|+-
T Consensus 178 ~------~~~~~~~~DivInaTp 194 (278)
T PRK00258 178 E------LQEELADFDLIINATS 194 (278)
T ss_pred c------chhccccCCEEEECCc
Confidence 1 1244678999999975
No 75
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=96.21 E-value=0.0089 Score=65.05 Aligned_cols=76 Identities=21% Similarity=0.293 Sum_probs=54.1
Q ss_pred HHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEec
Q 008516 9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH 88 (563)
Q Consensus 9 kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~ 88 (563)
.+.+++|+|+|+|+.|..++++|+..|+.+|+|+. |. ..|++.+++.+. ...+..+.
T Consensus 178 ~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~n----------Rt---------~~ra~~La~~~~----~~~~~~~~ 234 (414)
T PRK13940 178 NISSKNVLIIGAGQTGELLFRHVTALAPKQIMLAN----------RT---------IEKAQKITSAFR----NASAHYLS 234 (414)
T ss_pred CccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEC----------CC---------HHHHHHHHHHhc----CCeEecHH
Confidence 46789999999999999999999999999999973 32 135555555432 12222111
Q ss_pred cCCCCCcchHhhcccccEEEEccCCH
Q 008516 89 ANVKDPKFNVEFFKQFNVVLNGLDNL 114 (563)
Q Consensus 89 ~~i~~~~~~~~~~~~~dvVi~alDn~ 114 (563)
...+.+.++|+||+|+..+
T Consensus 235 -------~l~~~l~~aDiVI~aT~a~ 253 (414)
T PRK13940 235 -------ELPQLIKKADIIIAAVNVL 253 (414)
T ss_pred -------HHHHHhccCCEEEECcCCC
Confidence 1146688999999998754
No 76
>PRK04148 hypothetical protein; Provisional
Probab=96.19 E-value=0.057 Score=49.59 Aligned_cols=96 Identities=24% Similarity=0.416 Sum_probs=73.0
Q ss_pred cCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccC
Q 008516 11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN 90 (563)
Q Consensus 11 ~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~ 90 (563)
++.++++||+| -|..+++.|+..|. .++.+|.+. ...+.+++ . .+++..++
T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~~G~-~ViaIDi~~-------------------~aV~~a~~----~----~~~~v~dD 66 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKESGF-DVIVIDINE-------------------KAVEKAKK----L----GLNAFVDD 66 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHHHHCCC-EEEEEECCH-------------------HHHHHHHH----h----CCeEEECc
Confidence 34679999999 99999999999996 788888332 12222222 2 24566677
Q ss_pred CCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEeccc
Q 008516 91 VKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTT 137 (563)
Q Consensus 91 i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~ 137 (563)
+.+. +.++++++|+|....-.++....+-+++.+.+.+++-.-..
T Consensus 67 lf~p--~~~~y~~a~liysirpp~el~~~~~~la~~~~~~~~i~~l~ 111 (134)
T PRK04148 67 LFNP--NLEIYKNAKLIYSIRPPRDLQPFILELAKKINVPLIIKPLS 111 (134)
T ss_pred CCCC--CHHHHhcCCEEEEeCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 7654 46789999999999999999999999999999988765433
No 77
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.16 E-value=0.04 Score=58.00 Aligned_cols=165 Identities=13% Similarity=0.137 Sum_probs=93.7
Q ss_pred CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccCCC
Q 008516 13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVK 92 (563)
Q Consensus 13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~i~ 92 (563)
++|.|||+|-+|+.++..++..|. .++++|.+.=....+ +.+.....+.+.+..+. -.....++.
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~-~V~l~D~~~~~~~~~------------~~~i~~~~~~~~~~~~~--~~~~~~~i~ 72 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGL-DVVAWDPAPGAEAAL------------RANVANAWPALERQGLA--PGASPARLR 72 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHH------------HHHHHHHHHHHHHcCCC--hhhHHhhce
Confidence 579999999999999999999997 688988554211110 01111111111111110 001111221
Q ss_pred CCcchHhhcccccEEEEcc-CCHHHHHHHHHHHHhcCC--CEEEeccccceee-EEEEeCCCCccccccCCCCCCCCCce
Q 008516 93 DPKFNVEFFKQFNVVLNGL-DNLDARRHVNRLCLAADV--PLVESGTTGFLGQ-VTVHVKGKTECYECQPKPAPKTYPVC 168 (563)
Q Consensus 93 ~~~~~~~~~~~~dvVi~al-Dn~~ar~~in~~c~~~~~--pli~~gt~G~~G~-v~v~~~~~t~Cy~C~~~~~~~~~p~c 168 (563)
-...-.+.++++|+|+.++ .+.+.+..+-+.....-. .+|.+.|.|..-. +.-...+..-|...++-.++...|.-
T Consensus 73 ~~~~l~~av~~aDlViEavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS~l~~s~la~~~~~p~R~~g~HffnP~~~~pLV 152 (321)
T PRK07066 73 FVATIEACVADADFIQESAPEREALKLELHERISRAAKPDAIIASSTSGLLPTDFYARATHPERCVVGHPFNPVYLLPLV 152 (321)
T ss_pred ecCCHHHHhcCCCEEEECCcCCHHHHHHHHHHHHHhCCCCeEEEECCCccCHHHHHHhcCCcccEEEEecCCccccCceE
Confidence 1111235678999999986 456666554433322211 3788887765321 11112233345555565666677888
Q ss_pred eeccCCCCchhHHHHHHHHHHHHHhC
Q 008516 169 TITSTPSKFVHCIVWAKDLLFAKLFG 194 (563)
Q Consensus 169 ti~~~p~~~~hci~~a~~~lf~~lf~ 194 (563)
.|...+.+..-.+.++.+ ++.. .|
T Consensus 153 EVv~g~~T~~e~~~~~~~-f~~~-lG 176 (321)
T PRK07066 153 EVLGGERTAPEAVDAAMG-IYRA-LG 176 (321)
T ss_pred EEeCCCCCCHHHHHHHHH-HHHH-cC
Confidence 888888888888999998 4554 44
No 78
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=96.02 E-value=0.024 Score=58.83 Aligned_cols=84 Identities=21% Similarity=0.298 Sum_probs=54.1
Q ss_pred HcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEecc
Q 008516 10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA 89 (563)
Q Consensus 10 L~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~ 89 (563)
+++++++|+|+||.+..++-.|+..|+++|+|++.+. -...|++.+++.+....+ ..+....
T Consensus 122 ~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~----------------~~~~ka~~la~~~~~~~~-~~~~~~~- 183 (288)
T PRK12749 122 IKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRD----------------EFFDKALAFAQRVNENTD-CVVTVTD- 183 (288)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc----------------cHHHHHHHHHHHhhhccC-ceEEEec-
Confidence 4667899999999999999999999999999986221 124577777777654322 2222221
Q ss_pred CCCCCcchHhhcccccEEEEccC
Q 008516 90 NVKDPKFNVEFFKQFNVVLNGLD 112 (563)
Q Consensus 90 ~i~~~~~~~~~~~~~dvVi~alD 112 (563)
..+...-.+-..++|+||||+-
T Consensus 184 -~~~~~~l~~~~~~aDivINaTp 205 (288)
T PRK12749 184 -LADQQAFAEALASADILTNGTK 205 (288)
T ss_pred -hhhhhhhhhhcccCCEEEECCC
Confidence 1100000123467899999863
No 79
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=95.99 E-value=0.049 Score=54.37 Aligned_cols=99 Identities=18% Similarity=0.279 Sum_probs=65.8
Q ss_pred CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccCCC
Q 008516 13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVK 92 (563)
Q Consensus 13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~i~ 92 (563)
++++|+|+|.+|..++++|+..|- .+++||.|.- .+.+.+. ......++..+.+
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~-~Vv~Id~d~~----------------------~~~~~~~---~~~~~~~v~gd~t 54 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGH-NVVLIDRDEE----------------------RVEEFLA---DELDTHVVIGDAT 54 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCC-ceEEEEcCHH----------------------HHHHHhh---hhcceEEEEecCC
Confidence 479999999999999999999997 5777775431 1112121 1223444544444
Q ss_pred CCcch-HhhcccccEEEEccCCHHHHHHHHHHHHh-cCCCEEEeccc
Q 008516 93 DPKFN-VEFFKQFNVVLNGLDNLDARRHVNRLCLA-ADVPLVESGTT 137 (563)
Q Consensus 93 ~~~~~-~~~~~~~dvVi~alDn~~ar~~in~~c~~-~~~pli~~gt~ 137 (563)
+...- ..-+.++|+++.++++...-..+-.++.+ .++|-+.+-+.
T Consensus 55 ~~~~L~~agi~~aD~vva~t~~d~~N~i~~~la~~~~gv~~viar~~ 101 (225)
T COG0569 55 DEDVLEEAGIDDADAVVAATGNDEVNSVLALLALKEFGVPRVIARAR 101 (225)
T ss_pred CHHHHHhcCCCcCCEEEEeeCCCHHHHHHHHHHHHhcCCCcEEEEec
Confidence 32211 22367899999999987777777677655 78988877543
No 80
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=95.87 E-value=0.021 Score=52.75 Aligned_cols=35 Identities=40% Similarity=0.587 Sum_probs=30.8
Q ss_pred HcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516 10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM 44 (563)
Q Consensus 10 L~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~ 44 (563)
+.+++|+|+|+|++|..+++.|...|...++++|.
T Consensus 17 ~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r 51 (155)
T cd01065 17 LKGKKVLILGAGGAARAVAYALAELGAAKIVIVNR 51 (155)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcC
Confidence 45789999999999999999999998667888873
No 81
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=95.83 E-value=0.035 Score=57.39 Aligned_cols=75 Identities=23% Similarity=0.383 Sum_probs=53.7
Q ss_pred cCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccC
Q 008516 11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN 90 (563)
Q Consensus 11 ~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~ 90 (563)
..++++|+|+||.+-.++..|+..|+.+|+|++ |. ..|++.+++...+..+.+.......
T Consensus 125 ~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~N----------Rt---------~~ra~~La~~~~~~~~~~~~~~~~~- 184 (283)
T COG0169 125 TGKRVLILGAGGAARAVAFALAEAGAKRITVVN----------RT---------RERAEELADLFGELGAAVEAAALAD- 184 (283)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEe----------CC---------HHHHHHHHHHhhhcccccccccccc-
Confidence 358899999999999999999999999999974 32 3578888888877765222211110
Q ss_pred CCCCcchHhhcccccEEEEccC
Q 008516 91 VKDPKFNVEFFKQFNVVLNGLD 112 (563)
Q Consensus 91 i~~~~~~~~~~~~~dvVi~alD 112 (563)
.+-..++|+||||+.
T Consensus 185 -------~~~~~~~dliINaTp 199 (283)
T COG0169 185 -------LEGLEEADLLINATP 199 (283)
T ss_pred -------cccccccCEEEECCC
Confidence 011117899999975
No 82
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.82 E-value=0.04 Score=57.01 Aligned_cols=165 Identities=15% Similarity=0.205 Sum_probs=88.2
Q ss_pred CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCc---cccCCCCCCCCchHHHHHHHHHHhhCCCceEEEecc
Q 008516 13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLN---RQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA 89 (563)
Q Consensus 13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLn---RqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~ 89 (563)
.+|.|||+|.+|+.++.+|++.|. .++++|.+.=...... ++.+=+...-|+-..+.+.+.+.++. +
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~----~----- 75 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGV-DVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLR----F----- 75 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeE----e-----
Confidence 489999999999999999999997 6999985533222100 00000001112222221222222211 1
Q ss_pred CCCCCcchHhhcccccEEEEcc-CCHHHHHHHHHHHHh----cCCCEEEeccccce-eeEEEEeCCCCccccccCCCCCC
Q 008516 90 NVKDPKFNVEFFKQFNVVLNGL-DNLDARRHVNRLCLA----ADVPLVESGTTGFL-GQVTVHVKGKTECYECQPKPAPK 163 (563)
Q Consensus 90 ~i~~~~~~~~~~~~~dvVi~al-Dn~~ar~~in~~c~~----~~~pli~~gt~G~~-G~v~v~~~~~t~Cy~C~~~~~~~ 163 (563)
. ..+ +-++++|+|+.|+ ++.+.+..+-..... .+. ++-+.|.+.. ..+.........+...+.-.++.
T Consensus 76 --~-~~~--~~~~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~-il~snTS~~~~~~la~~~~~~~r~~g~hf~~P~~ 149 (286)
T PRK07819 76 --T-TDL--GDFADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDA-VLASNTSSIPIMKLAAATKRPGRVLGLHFFNPVP 149 (286)
T ss_pred --e-CCH--HHhCCCCEEEEecccCHHHHHHHHHHHHHhhCCCCc-EEEECCCCCCHHHHHhhcCCCccEEEEecCCCcc
Confidence 1 111 3368999999986 556666655433332 233 3444443321 11111112222233444434444
Q ss_pred CCCceeeccCCCCchhHHHHHHHHHHHHHhC
Q 008516 164 TYPVCTITSTPSKFVHCIVWAKDLLFAKLFG 194 (563)
Q Consensus 164 ~~p~cti~~~p~~~~hci~~a~~~lf~~lf~ 194 (563)
..|..++...+.+....+++++. ++....+
T Consensus 150 ~~~lvElv~~~~T~~~~~~~~~~-~~~~~lg 179 (286)
T PRK07819 150 VLPLVELVPTLVTSEATVARAEE-FASDVLG 179 (286)
T ss_pred cCceEEEeCCCCCCHHHHHHHHH-HHHHhCC
Confidence 55777888888888999999998 4454454
No 83
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.73 E-value=0.037 Score=57.04 Aligned_cols=32 Identities=34% Similarity=0.636 Sum_probs=28.9
Q ss_pred CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516 13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD 45 (563)
Q Consensus 13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D 45 (563)
.+|.|+|+|.+|..++..|+..|. +++++|.+
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~-~V~l~d~~ 35 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGF-DVTIYDIS 35 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCC
Confidence 579999999999999999999997 69999854
No 84
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.61 E-value=0.13 Score=53.43 Aligned_cols=159 Identities=13% Similarity=0.140 Sum_probs=79.5
Q ss_pred CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCc---eEE-Eec
Q 008516 13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQM---SIT-AHH 88 (563)
Q Consensus 13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v---~I~-~~~ 88 (563)
++|.|||+|.+|+.++..|+..|. +++++|.+.=. .+.+.+.+.+..... .+. ...
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~-~V~~~d~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGL-QVVLIDVMEGA-------------------LERARGVIERALGVYAPLGIASAGM 64 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHH-------------------HHHHHHHHHHHHHHhhhcccHHHHh
Confidence 479999999999999999999997 68888854311 111211111000000 000 000
Q ss_pred cCCCCCcchHhhcccccEEEEccCCHH-H-HHHHHHHHHh-cCCCEEEecccccee-eEEEEeCCCCccccccCCCCCCC
Q 008516 89 ANVKDPKFNVEFFKQFNVVLNGLDNLD-A-RRHVNRLCLA-ADVPLVESGTTGFLG-QVTVHVKGKTECYECQPKPAPKT 164 (563)
Q Consensus 89 ~~i~~~~~~~~~~~~~dvVi~alDn~~-a-r~~in~~c~~-~~~pli~~gt~G~~G-~v~v~~~~~t~Cy~C~~~~~~~~ 164 (563)
.++.-.....+..+++|+||.|+-... . +..+.++... .+..+|.+.+.|..- .+.-..+....+..+++-.++..
T Consensus 65 ~~i~~~~~~~~~~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~~~~~l~~~~~~~~~~ig~h~~~p~~~ 144 (311)
T PRK06130 65 GRIRMEAGLAAAVSGADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLPITAIAQAVTRPERFVGTHFFTPADV 144 (311)
T ss_pred hceEEeCCHHHHhccCCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEccCCCCcc
Confidence 001000112345788999999985432 2 3333333221 223356666665321 11111222233444444434433
Q ss_pred CCceeeccCCCCchhHHHHHHHHHHHHH
Q 008516 165 YPVCTITSTPSKFVHCIVWAKDLLFAKL 192 (563)
Q Consensus 165 ~p~cti~~~p~~~~hci~~a~~~lf~~l 192 (563)
.+..++...+......+.++++ +|+.+
T Consensus 145 ~~l~~i~~g~~t~~~~~~~v~~-l~~~~ 171 (311)
T PRK06130 145 IPLVEVVRGDKTSPQTVATTMA-LLRSI 171 (311)
T ss_pred CceEEEeCCCCCCHHHHHHHHH-HHHHc
Confidence 4455555555555666788887 56654
No 85
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.57 E-value=0.049 Score=59.56 Aligned_cols=95 Identities=22% Similarity=0.229 Sum_probs=60.3
Q ss_pred HcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEecc
Q 008516 10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA 89 (563)
Q Consensus 10 L~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~ 89 (563)
+++++|+|+|+|++|-++++.|+..|. +++++|.+.-+ ..+-..+.+.+. .+..+..
T Consensus 3 ~~~k~v~iiG~g~~G~~~A~~l~~~G~-~V~~~d~~~~~------------------~~~~~~~~l~~~----~~~~~~~ 59 (450)
T PRK14106 3 LKGKKVLVVGAGVSGLALAKFLKKLGA-KVILTDEKEED------------------QLKEALEELGEL----GIELVLG 59 (450)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchH------------------HHHHHHHHHHhc----CCEEEeC
Confidence 578999999999999999999999997 69998865310 111111223222 2333333
Q ss_pred CCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEE
Q 008516 90 NVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVE 133 (563)
Q Consensus 90 ~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~ 133 (563)
+.. .+...++|+||.+...... .-.-..|++.++|++.
T Consensus 60 ~~~-----~~~~~~~d~vv~~~g~~~~-~~~~~~a~~~~i~~~~ 97 (450)
T PRK14106 60 EYP-----EEFLEGVDLVVVSPGVPLD-SPPVVQAHKKGIEVIG 97 (450)
T ss_pred Ccc-----hhHhhcCCEEEECCCCCCC-CHHHHHHHHCCCcEEe
Confidence 332 2446789999997654222 2244566777888764
No 86
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=95.53 E-value=0.028 Score=53.67 Aligned_cols=35 Identities=26% Similarity=0.367 Sum_probs=30.8
Q ss_pred HHcCCcEEEECCcHH-HHHHHHHHHHhCCCeEEEEeC
Q 008516 9 AIKGAKVLMVGAGGI-GCELLKTLALSGFQDIHIIDM 44 (563)
Q Consensus 9 kL~~~~VlvvGaGgi-G~ellknLal~Gvg~I~iiD~ 44 (563)
.|.+++|+|||+|.+ |..++++|...|+ ++++++.
T Consensus 41 ~l~gk~vlViG~G~~~G~~~a~~L~~~g~-~V~v~~r 76 (168)
T cd01080 41 DLAGKKVVVVGRSNIVGKPLAALLLNRNA-TVTVCHS 76 (168)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHhhCCC-EEEEEEC
Confidence 478899999999985 8889999999998 6888873
No 87
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=95.52 E-value=0.056 Score=56.55 Aligned_cols=82 Identities=26% Similarity=0.352 Sum_probs=55.6
Q ss_pred HcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEecc
Q 008516 10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA 89 (563)
Q Consensus 10 L~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~ 89 (563)
+.+.+|+|+|+|.+|..+++.|...|..+++++|.+. .|+..+++.+. ..+....
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~-------------------~ra~~la~~~g-----~~~~~~~- 230 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTY-------------------ERAEELAKELG-----GNAVPLD- 230 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCH-------------------HHHHHHHHHcC-----CeEEeHH-
Confidence 5789999999999999999999998999999987432 34444444331 1221111
Q ss_pred CCCCCcchHhhcccccEEEEccCCHHHHHHHHH
Q 008516 90 NVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNR 122 (563)
Q Consensus 90 ~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~ 122 (563)
. ..+.+.++|+||.|+.+......+..
T Consensus 231 ~------~~~~l~~aDvVi~at~~~~~~~~~~~ 257 (311)
T cd05213 231 E------LLELLNEADVVISATGAPHYAKIVER 257 (311)
T ss_pred H------HHHHHhcCCEEEECCCCCchHHHHHH
Confidence 0 13456789999999987766333333
No 88
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=95.44 E-value=0.054 Score=53.57 Aligned_cols=97 Identities=16% Similarity=0.269 Sum_probs=69.2
Q ss_pred HHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEec
Q 008516 9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH 88 (563)
Q Consensus 9 kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~ 88 (563)
+|.+++|+|||.|.+|.-=++.|..+|. +++++-.+. + +. .+..+. .+ ++....
T Consensus 9 ~l~~k~VlvvGgG~va~rKa~~ll~~ga-~v~Vvs~~~-~-----------------~e---l~~~~~-~~---~i~~~~ 62 (210)
T COG1648 9 DLEGKKVLVVGGGSVALRKARLLLKAGA-DVTVVSPEF-E-----------------PE---LKALIE-EG---KIKWIE 62 (210)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhcCC-EEEEEcCCc-c-----------------HH---HHHHHH-hc---Ccchhh
Confidence 4678999999999999999999999996 688874433 1 11 111111 11 132222
Q ss_pred cCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEecc
Q 008516 89 ANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGT 136 (563)
Q Consensus 89 ~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt 136 (563)
..|+.+.+..+++|+.|+||.+.-..+.+.|..+++|.-.+.-
T Consensus 63 -----~~~~~~~~~~~~lviaAt~d~~ln~~i~~~a~~~~i~vNv~D~ 105 (210)
T COG1648 63 -----REFDAEDLDDAFLVIAATDDEELNERIAKAARERRILVNVVDD 105 (210)
T ss_pred -----cccChhhhcCceEEEEeCCCHHHHHHHHHHHHHhCCceeccCC
Confidence 2345566777999999999999999999999999997655543
No 89
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=95.39 E-value=0.12 Score=46.27 Aligned_cols=96 Identities=22% Similarity=0.294 Sum_probs=58.1
Q ss_pred cEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCC-CCchHHHHHHHHHHhhCCCceEEEeccCC
Q 008516 14 KVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSH-VGQSKAKVARDAVLKFRPQMSITAHHANV 91 (563)
Q Consensus 14 ~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~d-iGk~Ka~va~~~l~~~np~v~I~~~~~~i 91 (563)
||.||| .|-+|.++++.|...---++.. ++..+. .|+.=+.... ......++....
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~---------------~~~~~~~~g~~~~~~~~----~~~~~~~~~~~~--- 58 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVA---------------LVSSSRSAGKPLSEVFP----HPKGFEDLSVED--- 58 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEE---------------EEESTTTTTSBHHHTTG----GGTTTEEEBEEE---
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEE---------------eeeeccccCCeeehhcc----ccccccceeEee---
Confidence 799999 8999999999999843222222 122233 5654333221 111111222211
Q ss_pred CCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEecc
Q 008516 92 KDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGT 136 (563)
Q Consensus 92 ~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt 136 (563)
.+.+-+.+.|+|+.|+++..++.+..+. ...++++||.+.
T Consensus 59 ----~~~~~~~~~Dvvf~a~~~~~~~~~~~~~-~~~g~~ViD~s~ 98 (121)
T PF01118_consen 59 ----ADPEELSDVDVVFLALPHGASKELAPKL-LKAGIKVIDLSG 98 (121)
T ss_dssp ----TSGHHHTTESEEEE-SCHHHHHHHHHHH-HHTTSEEEESSS
T ss_pred ----cchhHhhcCCEEEecCchhHHHHHHHHH-hhCCcEEEeCCH
Confidence 1234469999999999987776666555 888999998653
No 90
>PRK10637 cysG siroheme synthase; Provisional
Probab=95.34 E-value=0.09 Score=58.06 Aligned_cols=95 Identities=12% Similarity=0.147 Sum_probs=69.2
Q ss_pred HHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEec
Q 008516 9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH 88 (563)
Q Consensus 9 kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~ 88 (563)
.|++.+|+|||.|.+|..=++.|...|. +|++|-.+. . +.++++-..-+|+.+.
T Consensus 9 ~l~~~~vlvvGgG~vA~rk~~~ll~~ga-~v~visp~~------------~-------------~~~~~l~~~~~i~~~~ 62 (457)
T PRK10637 9 QLRDRDCLLVGGGDVAERKARLLLDAGA-RLTVNALAF------------I-------------PQFTAWADAGMLTLVE 62 (457)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCC------------C-------------HHHHHHHhCCCEEEEe
Confidence 4789999999999999999999999996 788874331 1 0111111122344444
Q ss_pred cCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEe
Q 008516 89 ANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVES 134 (563)
Q Consensus 89 ~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~ 134 (563)
.. |..+.++++++|+.|+|+.+.-..+.+.|...++++-.+
T Consensus 63 ~~-----~~~~dl~~~~lv~~at~d~~~n~~i~~~a~~~~~lvN~~ 103 (457)
T PRK10637 63 GP-----FDESLLDTCWLAIAATDDDAVNQRVSEAAEARRIFCNVV 103 (457)
T ss_pred CC-----CChHHhCCCEEEEECCCCHHHhHHHHHHHHHcCcEEEEC
Confidence 33 345668899999999999999999999999998865434
No 91
>KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only]
Probab=95.25 E-value=0.048 Score=54.17 Aligned_cols=80 Identities=25% Similarity=0.386 Sum_probs=59.9
Q ss_pred HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEec
Q 008516 10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH 88 (563)
Q Consensus 10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~ 88 (563)
+.+++++++| +||||-+++|.|..-|+..+.|.| +.+. -.+...++++||.+++..+.
T Consensus 3 ~tGKna~vtggagGIGl~~sk~Ll~kgik~~~i~~---------------~~En------~~a~akL~ai~p~~~v~F~~ 61 (261)
T KOG4169|consen 3 LTGKNALVTGGAGGIGLATSKALLEKGIKVLVIDD---------------SEEN------PEAIAKLQAINPSVSVIFIK 61 (261)
T ss_pred ccCceEEEecCCchhhHHHHHHHHHcCchheeehh---------------hhhC------HHHHHHHhccCCCceEEEEE
Confidence 4577888885 999999999999999998877754 1111 23556789999999999999
Q ss_pred cCCCCCcchH-------hhcccccEEEEc
Q 008516 89 ANVKDPKFNV-------EFFKQFNVVLNG 110 (563)
Q Consensus 89 ~~i~~~~~~~-------~~~~~~dvVi~a 110 (563)
.++++...-. .-|...|++||.
T Consensus 62 ~DVt~~~~~~~~f~ki~~~fg~iDIlINg 90 (261)
T KOG4169|consen 62 CDVTNRGDLEAAFDKILATFGTIDILING 90 (261)
T ss_pred eccccHHHHHHHHHHHHHHhCceEEEEcc
Confidence 9986532111 235677999994
No 92
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=95.24 E-value=0.073 Score=55.54 Aligned_cols=73 Identities=22% Similarity=0.337 Sum_probs=50.0
Q ss_pred CcEEEECCcHHHHHHHHHHHHhCCC-eEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhC----CCceEEEe
Q 008516 13 AKVLMVGAGGIGCELLKTLALSGFQ-DIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFR----PQMSITAH 87 (563)
Q Consensus 13 ~~VlvvGaGgiG~ellknLal~Gvg-~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~n----p~v~I~~~ 87 (563)
+||.|+|+|++|+.++..|+..|+. +|.++|.+ ..|++..+..+.+.. ..+++..
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~-------------------~~~~~~~a~dL~~~~~~~~~~~~i~~- 60 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDIN-------------------EEKAEGEALDLEDALAFLPSPVKIKA- 60 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC-------------------cchhhHhHhhHHHHhhccCCCeEEEc-
Confidence 3799999999999999999999985 89999843 234444455554332 1222321
Q ss_pred ccCCCCCcchHhhcccccEEEEccCC
Q 008516 88 HANVKDPKFNVEFFKQFNVVLNGLDN 113 (563)
Q Consensus 88 ~~~i~~~~~~~~~~~~~dvVi~alDn 113 (563)
. +.+-++++|+||++...
T Consensus 61 -~-------~~~~l~~aDIVIitag~ 78 (306)
T cd05291 61 -G-------DYSDCKDADIVVITAGA 78 (306)
T ss_pred -C-------CHHHhCCCCEEEEccCC
Confidence 1 12336899999998764
No 93
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=95.01 E-value=0.075 Score=51.39 Aligned_cols=83 Identities=20% Similarity=0.239 Sum_probs=54.1
Q ss_pred HHcCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEe
Q 008516 9 AIKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH 87 (563)
Q Consensus 9 kL~~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~ 87 (563)
.+++++++|+|+ |++|..+++.|+..| .++++++.+ ..|++.+++.+.+.. ...+...
T Consensus 25 ~l~~~~vlVlGgtG~iG~~~a~~l~~~g-~~V~l~~R~-------------------~~~~~~l~~~l~~~~-~~~~~~~ 83 (194)
T cd01078 25 DLKGKTAVVLGGTGPVGQRAAVLLAREG-ARVVLVGRD-------------------LERAQKAADSLRARF-GEGVGAV 83 (194)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEcCC-------------------HHHHHHHHHHHHhhc-CCcEEEe
Confidence 457789999996 999999999999988 488887532 245555666554322 2333332
Q ss_pred ccCCCCCcchHhhcccccEEEEccCCH
Q 008516 88 HANVKDPKFNVEFFKQFNVVLNGLDNL 114 (563)
Q Consensus 88 ~~~i~~~~~~~~~~~~~dvVi~alDn~ 114 (563)
...+.....+.++++|+||+++...
T Consensus 84 --~~~~~~~~~~~~~~~diVi~at~~g 108 (194)
T cd01078 84 --ETSDDAARAAAIKGADVVFAAGAAG 108 (194)
T ss_pred --eCCCHHHHHHHHhcCCEEEECCCCC
Confidence 1111111235678899999987643
No 94
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=94.97 E-value=0.098 Score=62.82 Aligned_cols=99 Identities=21% Similarity=0.278 Sum_probs=63.2
Q ss_pred cCCcEEEECCcHHHHHHHHHHHHhCCC-------------eEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHh
Q 008516 11 KGAKVLMVGAGGIGCELLKTLALSGFQ-------------DIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLK 77 (563)
Q Consensus 11 ~~~~VlvvGaGgiG~ellknLal~Gvg-------------~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~ 77 (563)
+.+||+|+|||.+|..+++.|+..+-- .+++.|.+ ..+++.+++.
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~-------------------~~~a~~la~~--- 625 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLY-------------------LKDAKETVEG--- 625 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCC-------------------HHHHHHHHHh---
Confidence 467999999999999999999976432 24444422 2334433332
Q ss_pred hCCCceEEEeccCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEec
Q 008516 78 FRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESG 135 (563)
Q Consensus 78 ~np~v~I~~~~~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~g 135 (563)
.|+++ +..-++.+...-.+++++.|+||+|+-+ ..=..+.+.|.++++.+++..
T Consensus 626 -~~~~~--~v~lDv~D~e~L~~~v~~~DaVIsalP~-~~H~~VAkaAieaGkHvv~ek 679 (1042)
T PLN02819 626 -IENAE--AVQLDVSDSESLLKYVSQVDVVISLLPA-SCHAVVAKACIELKKHLVTAS 679 (1042)
T ss_pred -cCCCc--eEEeecCCHHHHHHhhcCCCEEEECCCc-hhhHHHHHHHHHcCCCEEECc
Confidence 24332 2232233222223455789999999976 334557888999999998764
No 95
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=94.93 E-value=0.033 Score=55.64 Aligned_cols=37 Identities=27% Similarity=0.532 Sum_probs=34.7
Q ss_pred HHcCCcEEEECCcHHHHHHHHHHHHhCCC--eEEEEeCC
Q 008516 9 AIKGAKVLMVGAGGIGCELLKTLALSGFQ--DIHIIDMD 45 (563)
Q Consensus 9 kL~~~~VlvvGaGgiG~ellknLal~Gvg--~I~iiD~D 45 (563)
.+++.||+|+|+|+.|..+++.|+..|++ +|+|+|.+
T Consensus 22 ~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~ 60 (226)
T cd05311 22 KIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK 60 (226)
T ss_pred CccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence 47889999999999999999999999999 99999976
No 96
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=94.79 E-value=0.12 Score=54.18 Aligned_cols=75 Identities=21% Similarity=0.274 Sum_probs=50.6
Q ss_pred CCcEEEECCcHHHHHHHHHHHHhCCC-eEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCc-eEEEecc
Q 008516 12 GAKVLMVGAGGIGCELLKTLALSGFQ-DIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQM-SITAHHA 89 (563)
Q Consensus 12 ~~~VlvvGaGgiG~ellknLal~Gvg-~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v-~I~~~~~ 89 (563)
..||.|+|+|.+|+.++-.|+..|+. +|.|+|- -+.|+...+.-+.+..|.. ++....+
T Consensus 6 ~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~-------------------~~~~~~g~~~Dl~~~~~~~~~~~i~~~ 66 (315)
T PRK00066 6 HNKVVLVGDGAVGSSYAYALVNQGIADELVIIDI-------------------NKEKAEGDAMDLSHAVPFTSPTKIYAG 66 (315)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC-------------------CCchhHHHHHHHHhhccccCCeEEEeC
Confidence 46899999999999999999999985 7999883 2334444455555554321 2222211
Q ss_pred CCCCCcchHhhcccccEEEEccC
Q 008516 90 NVKDPKFNVEFFKQFNVVLNGLD 112 (563)
Q Consensus 90 ~i~~~~~~~~~~~~~dvVi~alD 112 (563)
+.+-++++|+||.+..
T Consensus 67 -------~~~~~~~adivIitag 82 (315)
T PRK00066 67 -------DYSDCKDADLVVITAG 82 (315)
T ss_pred -------CHHHhCCCCEEEEecC
Confidence 1234799999988654
No 97
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=94.78 E-value=0.14 Score=57.15 Aligned_cols=88 Identities=19% Similarity=0.263 Sum_probs=67.3
Q ss_pred HHHHHHHcCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCc
Q 008516 4 ERQLEAIKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQM 82 (563)
Q Consensus 4 ~~~q~kL~~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v 82 (563)
++....+.+++|+|-|+ |++|+|+++.++..+.++|.++|.|. .|-..+...+++..|..
T Consensus 242 ~~i~~~~~gK~vLVTGagGSiGsel~~qil~~~p~~i~l~~~~E-------------------~~~~~i~~el~~~~~~~ 302 (588)
T COG1086 242 ELIGAMLTGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDE-------------------YKLYLIDMELREKFPEL 302 (588)
T ss_pred HHHHhHcCCCEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecCch-------------------HHHHHHHHHHHhhCCCc
Confidence 34567789999999985 56899999999999999999987554 44455677778888888
Q ss_pred eEEEeccCCCCCcchHhhccc--ccEEEEc
Q 008516 83 SITAHHANVKDPKFNVEFFKQ--FNVVLNG 110 (563)
Q Consensus 83 ~I~~~~~~i~~~~~~~~~~~~--~dvVi~a 110 (563)
++..+-+++.+..--...+++ .|+|+-|
T Consensus 303 ~~~~~igdVrD~~~~~~~~~~~kvd~VfHA 332 (588)
T COG1086 303 KLRFYIGDVRDRDRVERAMEGHKVDIVFHA 332 (588)
T ss_pred ceEEEecccccHHHHHHHHhcCCCceEEEh
Confidence 888888888654333455565 6777765
No 98
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=94.73 E-value=0.11 Score=48.08 Aligned_cols=75 Identities=24% Similarity=0.352 Sum_probs=52.0
Q ss_pred CcEEEECC-cHHHHHHHHHHHHhCCC-eEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC--ceEEEec
Q 008516 13 AKVLMVGA-GGIGCELLKTLALSGFQ-DIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ--MSITAHH 88 (563)
Q Consensus 13 ~~VlvvGa-GgiG~ellknLal~Gvg-~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~--v~I~~~~ 88 (563)
.||.|||+ |.+|+.++-.|+..|+. +|.|+|.+ ..|++.-+.-+.+..+. ..+....
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~-------------------~~~~~g~a~Dl~~~~~~~~~~~~i~~ 61 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDIN-------------------EDKAEGEALDLSHASAPLPSPVRITS 61 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESS-------------------HHHHHHHHHHHHHHHHGSTEEEEEEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccC-------------------cccceeeehhhhhhhhhccccccccc
Confidence 48999999 99999999999999985 59999832 23555555555544322 2333333
Q ss_pred cCCCCCcchHhhcccccEEEEccCC
Q 008516 89 ANVKDPKFNVEFFKQFNVVLNGLDN 113 (563)
Q Consensus 89 ~~i~~~~~~~~~~~~~dvVi~alDn 113 (563)
+ +.+-+++.|+||.+...
T Consensus 62 ~-------~~~~~~~aDivvitag~ 79 (141)
T PF00056_consen 62 G-------DYEALKDADIVVITAGV 79 (141)
T ss_dssp S-------SGGGGTTESEEEETTST
T ss_pred c-------cccccccccEEEEeccc
Confidence 2 23457899999997543
No 99
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=94.72 E-value=0.036 Score=53.36 Aligned_cols=163 Identities=15% Similarity=0.266 Sum_probs=83.0
Q ss_pred cEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCcccc---CCCCCCCCchHHHHHHHHHHhhCCCceEEEeccC
Q 008516 14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQF---LFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN 90 (563)
Q Consensus 14 ~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqf---Lf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~ 90 (563)
+|.|||+|.+|.-++-.+++.|. +++++|.+.-.....-+.. |=+..+-|+...+.+.+.+.++. + ..+
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~----~---~~d 72 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGY-EVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARIS----F---TTD 72 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTS-EEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEE----E---ESS
T ss_pred CEEEEcCCHHHHHHHHHHHhCCC-cEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcc----c---ccC
Confidence 68999999999999999999997 7999997554322211110 00001112222233333333322 1 111
Q ss_pred CCCCcchHhhcccccEEEEcc-CCHHHHHHHHHHHHhc--CCCEEEeccccce-eeEEEEeCCCCccccccCCCCCCCCC
Q 008516 91 VKDPKFNVEFFKQFNVVLNGL-DNLDARRHVNRLCLAA--DVPLVESGTTGFL-GQVTVHVKGKTECYECQPKPAPKTYP 166 (563)
Q Consensus 91 i~~~~~~~~~~~~~dvVi~al-Dn~~ar~~in~~c~~~--~~pli~~gt~G~~-G~v~v~~~~~t~Cy~C~~~~~~~~~p 166 (563)
+ .+. .++|+||.|. .+.+.++.+-+..... .-.++.+.|.++. ..+....+...-+...+.-.++..-|
T Consensus 73 l------~~~-~~adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~la~~~~~p~R~ig~Hf~~P~~~~~ 145 (180)
T PF02737_consen 73 L------EEA-VDADLVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLSISELAAALSRPERFIGMHFFNPPHLMP 145 (180)
T ss_dssp G------GGG-CTESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHHHHTTSSTGGGEEEEEE-SSTTT--
T ss_pred H------HHH-hhhheehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHHHHhccCcCceEEEEecccccccCc
Confidence 1 233 3999999986 5666666554443332 2235555555432 11100011222233444444556678
Q ss_pred ceeeccCCCCchhHHHHHHHHHHHHH
Q 008516 167 VCTITSTPSKFVHCIVWAKDLLFAKL 192 (563)
Q Consensus 167 ~cti~~~p~~~~hci~~a~~~lf~~l 192 (563)
...|...|.+..-++.++.+ +...+
T Consensus 146 lVEvv~~~~T~~~~~~~~~~-~~~~~ 170 (180)
T PF02737_consen 146 LVEVVPGPKTSPETVDRVRA-LLRSL 170 (180)
T ss_dssp EEEEEE-TTS-HHHHHHHHH-HHHHT
T ss_pred eEEEeCCCCCCHHHHHHHHH-HHHHC
Confidence 88888889888889999998 45544
No 100
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=94.71 E-value=0.16 Score=45.70 Aligned_cols=98 Identities=29% Similarity=0.322 Sum_probs=60.2
Q ss_pred cEEEECC-cHHHHHHHHHHHH-hCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccCC
Q 008516 14 KVLMVGA-GGIGCELLKTLAL-SGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV 91 (563)
Q Consensus 14 ~VlvvGa-GgiG~ellknLal-~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~i 91 (563)
||.|+|+ |-+|.++++.+.. .|+.-.-.+|... |. +-.+|+|. .+......+.+.
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~---~~------~~g~d~g~--------~~~~~~~~~~v~------ 58 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKP---SA------KVGKDVGE--------LAGIGPLGVPVT------ 58 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTT---ST------TTTSBCHH--------HCTSST-SSBEB------
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCC---cc------cccchhhh--------hhCcCCcccccc------
Confidence 7999999 9999999999998 6665555555333 00 11234431 111111122221
Q ss_pred CCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEeccccc
Q 008516 92 KDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGF 139 (563)
Q Consensus 92 ~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~G~ 139 (563)
..-.+.+..+|+||+.+ ++++-...-+.|.++++|+|-+ |+|+
T Consensus 59 ---~~l~~~~~~~DVvIDfT-~p~~~~~~~~~~~~~g~~~ViG-TTG~ 101 (124)
T PF01113_consen 59 ---DDLEELLEEADVVIDFT-NPDAVYDNLEYALKHGVPLVIG-TTGF 101 (124)
T ss_dssp ---S-HHHHTTH-SEEEEES--HHHHHHHHHHHHHHT-EEEEE--SSS
T ss_pred ---hhHHHhcccCCEEEEcC-ChHHhHHHHHHHHhCCCCEEEE-CCCC
Confidence 11256677799999998 6787777888899999998865 4454
No 101
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=94.61 E-value=0.063 Score=44.19 Aligned_cols=54 Identities=26% Similarity=0.377 Sum_probs=39.1
Q ss_pred cEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhC
Q 008516 14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFR 79 (563)
Q Consensus 14 ~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~n 79 (563)
||+|||+|.+|+|++..|+..|. ++++++...- +. ...+..=+..+.+.+++.+
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~-~vtli~~~~~----------~~-~~~~~~~~~~~~~~l~~~g 54 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGK-EVTLIERSDR----------LL-PGFDPDAAKILEEYLRKRG 54 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTS-EEEEEESSSS----------SS-TTSSHHHHHHHHHHHHHTT
T ss_pred CEEEECcCHHHHHHHHHHHHhCc-EEEEEeccch----------hh-hhcCHHHHHHHHHHHHHCC
Confidence 68999999999999999999995 7898874332 11 2334444556667776663
No 102
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=94.55 E-value=0.43 Score=49.28 Aligned_cols=164 Identities=16% Similarity=0.204 Sum_probs=79.7
Q ss_pred CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCce--EEEeccC
Q 008516 13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMS--ITAHHAN 90 (563)
Q Consensus 13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~--I~~~~~~ 90 (563)
++|.|||+|.+|+.++..|+..|. +++++|.+.=. +.+ ++...+-..+.+.+...-.. .......
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~---~~~---------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 71 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGM-DVWLLDSDPAA---LSR---------GLDSISSSLARLVKKGKMSQEEADATLGR 71 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCHHH---HHH---------HHHHHHHHHHHHHHcCCCCHHHHHHHHhc
Confidence 579999999999999999999996 78888854311 110 00000001111111100000 0000000
Q ss_pred CCCCcchHhhcccccEEEEccC-CHHHHHHHHHHHHh--cCCCEEEeccccce-eeEEEEeCCCCccccccCCCCCCCCC
Q 008516 91 VKDPKFNVEFFKQFNVVLNGLD-NLDARRHVNRLCLA--ADVPLVESGTTGFL-GQVTVHVKGKTECYECQPKPAPKTYP 166 (563)
Q Consensus 91 i~~~~~~~~~~~~~dvVi~alD-n~~ar~~in~~c~~--~~~pli~~gt~G~~-G~v~v~~~~~t~Cy~C~~~~~~~~~p 166 (563)
+.-. .+.+-++++|+||.|+- +.+....+-+.... ..-.+|-+.+.|.. ..+.-.......+...++-.++...+
T Consensus 72 ~~~~-~~~~~~~~aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~~~l~~~~~~~~r~~g~h~~~pp~~~~ 150 (295)
T PLN02545 72 IRCT-TNLEELRDADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISITRLASATQRPQQVIGMHFMNPPPIMK 150 (295)
T ss_pred eEee-CCHHHhCCCCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCcceEEEeccCCcccCc
Confidence 0000 01234689999999875 34444443332222 11234544444432 11111122223344444444555566
Q ss_pred ceeeccCCCCchhHHHHHHHHHHHH
Q 008516 167 VCTITSTPSKFVHCIVWAKDLLFAK 191 (563)
Q Consensus 167 ~cti~~~p~~~~hci~~a~~~lf~~ 191 (563)
...+...+......+..+++ +|+.
T Consensus 151 lveiv~g~~t~~e~~~~~~~-ll~~ 174 (295)
T PLN02545 151 LVEIIRGADTSDEVFDATKA-LAER 174 (295)
T ss_pred eEEEeCCCCCCHHHHHHHHH-HHHH
Confidence 76776666666666777777 5664
No 103
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.54 E-value=0.32 Score=49.88 Aligned_cols=157 Identities=17% Similarity=0.231 Sum_probs=81.3
Q ss_pred CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC---------ce
Q 008516 13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ---------MS 83 (563)
Q Consensus 13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~---------v~ 83 (563)
.+|.|||+|-+|+.++..|+..|. +++++|.+.=. +.+ ++...+...+.+.+...- .+
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~-~V~~~d~~~~~---~~~---------~~~~i~~~l~~~~~~g~~~~~~~~~~~~~ 70 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGY-DVVMVDISDAA---VDR---------GLATITKSLDRLVKKGKMTEADKEAALAR 70 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCC-ceEEEeCCHHH---HHH---------HHHHHHHHHHHHHHcCCCCHHHHHHHHhC
Confidence 479999999999999999999997 78888854321 111 111111111111111000 01
Q ss_pred EEEeccCCCCCcchHhhcccccEEEEcc-CCHHHHH-HHHHHHHhc-CCCEEEeccccceee-EEEEeCCCCccccccCC
Q 008516 84 ITAHHANVKDPKFNVEFFKQFNVVLNGL-DNLDARR-HVNRLCLAA-DVPLVESGTTGFLGQ-VTVHVKGKTECYECQPK 159 (563)
Q Consensus 84 I~~~~~~i~~~~~~~~~~~~~dvVi~al-Dn~~ar~-~in~~c~~~-~~pli~~gt~G~~G~-v~v~~~~~t~Cy~C~~~ 159 (563)
+... . . .+-.+++|+||.|+ .+..... .+.++.... .-.++.+.+.|..-. +.-..+....+...++-
T Consensus 71 l~~~-----~-~--~~~~~~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~~la~~~~~~~r~ig~h~~ 142 (282)
T PRK05808 71 ITGT-----T-D--LDDLKDADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSLSITELAAATKRPDKVIGMHFF 142 (282)
T ss_pred eEEe-----C-C--HHHhccCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhhCCCcceEEeecc
Confidence 2111 1 1 12368899999987 4555443 333332221 123555666554322 11112222334444444
Q ss_pred CCCCCCCceeeccCCCCchhHHHHHHHHHHHH
Q 008516 160 PAPKTYPVCTITSTPSKFVHCIVWAKDLLFAK 191 (563)
Q Consensus 160 ~~~~~~p~cti~~~p~~~~hci~~a~~~lf~~ 191 (563)
.+...-|..++...+......+..++. ++..
T Consensus 143 ~P~~~~~~vev~~g~~t~~e~~~~~~~-l~~~ 173 (282)
T PRK05808 143 NPVPVMKLVEIIRGLATSDATHEAVEA-LAKK 173 (282)
T ss_pred CCcccCccEEEeCCCCCCHHHHHHHHH-HHHH
Confidence 333334555666666666667777777 4553
No 104
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=94.52 E-value=0.17 Score=53.37 Aligned_cols=35 Identities=29% Similarity=0.577 Sum_probs=31.6
Q ss_pred HcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516 10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM 44 (563)
Q Consensus 10 L~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~ 44 (563)
++..||.|||+|.+|+.++-.++..|+..+.++|-
T Consensus 4 ~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi 38 (321)
T PTZ00082 4 IKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDI 38 (321)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeC
Confidence 45689999999999999999999999867999984
No 105
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.43 E-value=0.16 Score=53.13 Aligned_cols=71 Identities=17% Similarity=0.281 Sum_probs=49.2
Q ss_pred cEEEECCcHHHHHHHHHHHHhCC-CeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCC-----CceEEEe
Q 008516 14 KVLMVGAGGIGCELLKTLALSGF-QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRP-----QMSITAH 87 (563)
Q Consensus 14 ~VlvvGaGgiG~ellknLal~Gv-g~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np-----~v~I~~~ 87 (563)
||.|||+|.+|+.++-.|+..|+ ++|.|+|- -+.|++.-+.-+.+..+ +++|.
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di-------------------~~~~a~g~a~DL~~~~~~~~~~~~~i~-- 59 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDV-------------------NEGVAEGEALDFHHATALTYSTNTKIR-- 59 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC-------------------CcchhhHHHHHHHhhhccCCCCCEEEE--
Confidence 68999999999999999999998 57999982 23345444445554332 23333
Q ss_pred ccCCCCCcchHhhcccccEEEEccC
Q 008516 88 HANVKDPKFNVEFFKQFNVVLNGLD 112 (563)
Q Consensus 88 ~~~i~~~~~~~~~~~~~dvVi~alD 112 (563)
.+ +.+-++++|+||.+..
T Consensus 60 ~~-------~y~~~~~aDivvitaG 77 (307)
T cd05290 60 AG-------DYDDCADADIIVITAG 77 (307)
T ss_pred EC-------CHHHhCCCCEEEECCC
Confidence 22 1355899999988654
No 106
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=94.23 E-value=0.24 Score=51.18 Aligned_cols=33 Identities=27% Similarity=0.589 Sum_probs=29.8
Q ss_pred CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCc
Q 008516 13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT 46 (563)
Q Consensus 13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~ 46 (563)
.+|.|+|+|.+|+.++..|+..|. +++++|.+.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~ 36 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGY-DVTIVDVSE 36 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCC-eEEEEeCCH
Confidence 579999999999999999999998 699998654
No 107
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=94.17 E-value=0.08 Score=54.86 Aligned_cols=77 Identities=26% Similarity=0.441 Sum_probs=46.5
Q ss_pred EEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCC--Cc--eEEEecc
Q 008516 15 VLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRP--QM--SITAHHA 89 (563)
Q Consensus 15 VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np--~v--~I~~~~~ 89 (563)
|||-| +|.||+|+++.|+..|..+|.++|.|--...++.+. +++..| .+ .+.+...
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~-------------------l~~~~~~~~v~~~~~~vig 61 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERE-------------------LRSRFPDPKVRFEIVPVIG 61 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHH-------------------CHHHC--TTCEEEEE--CT
T ss_pred CEEEccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHH-------------------HhhcccccCcccccCceee
Confidence 67886 788999999999999999999999776555444444 333222 23 2344555
Q ss_pred CCCCCcchHhhcc--cccEEEEc
Q 008516 90 NVKDPKFNVEFFK--QFNVVLNG 110 (563)
Q Consensus 90 ~i~~~~~~~~~~~--~~dvVi~a 110 (563)
++.+...-...++ +.|+|+.|
T Consensus 62 Dvrd~~~l~~~~~~~~pdiVfHa 84 (293)
T PF02719_consen 62 DVRDKERLNRIFEEYKPDIVFHA 84 (293)
T ss_dssp SCCHHHHHHHHTT--T-SEEEE-
T ss_pred cccCHHHHHHHHhhcCCCEEEEC
Confidence 6644333334455 67777775
No 108
>PLN00203 glutamyl-tRNA reductase
Probab=94.11 E-value=0.12 Score=57.83 Aligned_cols=78 Identities=21% Similarity=0.342 Sum_probs=52.6
Q ss_pred HcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEecc
Q 008516 10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA 89 (563)
Q Consensus 10 L~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~ 89 (563)
|.+.+|+|||+|.+|..++++|...|+.+|++++.+ ..|++.+++.+ +++.+.....
T Consensus 264 l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs-------------------~era~~La~~~----~g~~i~~~~~ 320 (519)
T PLN00203 264 HASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRS-------------------EERVAALREEF----PDVEIIYKPL 320 (519)
T ss_pred CCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCC-------------------HHHHHHHHHHh----CCCceEeecH
Confidence 557999999999999999999999999999997522 13444444433 2333322111
Q ss_pred CCCCCcchHhhcccccEEEEccCCHH
Q 008516 90 NVKDPKFNVEFFKQFNVVLNGLDNLD 115 (563)
Q Consensus 90 ~i~~~~~~~~~~~~~dvVi~alDn~~ 115 (563)
. ...+.+.++|+||.|+....
T Consensus 321 --~---dl~~al~~aDVVIsAT~s~~ 341 (519)
T PLN00203 321 --D---EMLACAAEADVVFTSTSSET 341 (519)
T ss_pred --h---hHHHHHhcCCEEEEccCCCC
Confidence 0 12356789999999975433
No 109
>PRK07063 short chain dehydrogenase; Provisional
Probab=94.11 E-value=0.23 Score=49.67 Aligned_cols=64 Identities=27% Similarity=0.394 Sum_probs=43.9
Q ss_pred HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEe
Q 008516 9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH 87 (563)
Q Consensus 9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~ 87 (563)
++.+++++|.| .||||.++++.|+..|. ++.++|.+ ..+.+.+++.+...++..++..+
T Consensus 4 ~l~~k~vlVtGas~gIG~~~a~~l~~~G~-~vv~~~r~-------------------~~~~~~~~~~~~~~~~~~~~~~~ 63 (260)
T PRK07063 4 RLAGKVALVTGAAQGIGAAIARAFAREGA-AVALADLD-------------------AALAERAAAAIARDVAGARVLAV 63 (260)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCC-------------------HHHHHHHHHHHHhccCCceEEEE
Confidence 46788999998 58999999999999997 57776621 23444455555544445556666
Q ss_pred ccCCC
Q 008516 88 HANVK 92 (563)
Q Consensus 88 ~~~i~ 92 (563)
..+++
T Consensus 64 ~~Dl~ 68 (260)
T PRK07063 64 PADVT 68 (260)
T ss_pred EccCC
Confidence 55554
No 110
>PRK06197 short chain dehydrogenase; Provisional
Probab=94.01 E-value=0.22 Score=51.40 Aligned_cols=36 Identities=22% Similarity=0.332 Sum_probs=29.9
Q ss_pred HHHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516 8 EAIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM 44 (563)
Q Consensus 8 ~kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~ 44 (563)
..+.+++|+|.| .||||.++++.|+..|. ++.+++.
T Consensus 12 ~~~~~k~vlItGas~gIG~~~a~~l~~~G~-~vi~~~r 48 (306)
T PRK06197 12 PDQSGRVAVVTGANTGLGYETAAALAAKGA-HVVLAVR 48 (306)
T ss_pred ccCCCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeC
Confidence 356788899998 59999999999999997 5767653
No 111
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=93.90 E-value=0.22 Score=50.89 Aligned_cols=73 Identities=19% Similarity=0.332 Sum_probs=48.3
Q ss_pred cCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccC
Q 008516 11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN 90 (563)
Q Consensus 11 ~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~ 90 (563)
.+++++|+|+||+|..++..|+..|. +++++|.+ ..|++.+++.+... +. +....
T Consensus 116 ~~k~vliiGaGg~g~aia~~L~~~g~-~v~v~~R~-------------------~~~~~~la~~~~~~-~~--~~~~~-- 170 (270)
T TIGR00507 116 PNQRVLIIGAGGAARAVALPLLKADC-NVIIANRT-------------------VSKAEELAERFQRY-GE--IQAFS-- 170 (270)
T ss_pred cCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEeCC-------------------HHHHHHHHHHHhhc-Cc--eEEec--
Confidence 46789999999999999999999996 88887632 24566566655432 11 11111
Q ss_pred CCCCcchHhhcccccEEEEccCC
Q 008516 91 VKDPKFNVEFFKQFNVVLNGLDN 113 (563)
Q Consensus 91 i~~~~~~~~~~~~~dvVi~alDn 113 (563)
. +.....++|+||+++-.
T Consensus 171 ~-----~~~~~~~~DivInatp~ 188 (270)
T TIGR00507 171 M-----DELPLHRVDLIINATSA 188 (270)
T ss_pred h-----hhhcccCccEEEECCCC
Confidence 1 11123578999998753
No 112
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=93.89 E-value=0.52 Score=47.76 Aligned_cols=79 Identities=19% Similarity=0.265 Sum_probs=49.0
Q ss_pred CcEEEECCcHHHHHHHHHHHHhCC--CeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccC
Q 008516 13 AKVLMVGAGGIGCELLKTLALSGF--QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN 90 (563)
Q Consensus 13 ~~VlvvGaGgiG~ellknLal~Gv--g~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~ 90 (563)
.+|.|||+|.+|..++..|...|. ..+.++|.+. .+++.+++. + ++.+
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~-------------------~~~~~~~~~---~--g~~~------ 52 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSP-------------------EKRAALAEE---Y--GVRA------ 52 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCH-------------------HHHHHHHHh---c--CCee------
Confidence 579999999999999999999984 3566655221 122222221 1 1221
Q ss_pred CCCCcchHhhcccccEEEEccCCHHHHHHHHHHH
Q 008516 91 VKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLC 124 (563)
Q Consensus 91 i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c 124 (563)
.. ...+...++|+|+.|+-....+..+.++.
T Consensus 53 -~~--~~~~~~~~advVil~v~~~~~~~v~~~l~ 83 (267)
T PRK11880 53 -AT--DNQEAAQEADVVVLAVKPQVMEEVLSELK 83 (267)
T ss_pred -cC--ChHHHHhcCCEEEEEcCHHHHHHHHHHHH
Confidence 11 12345678999999987665666555543
No 113
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=93.79 E-value=0.13 Score=48.43 Aligned_cols=116 Identities=17% Similarity=0.288 Sum_probs=59.5
Q ss_pred CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccC--
Q 008516 13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN-- 90 (563)
Q Consensus 13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~-- 90 (563)
++|.+||+|..|+.++++|+..|+ .+++.|.+.-....+..+ |-..+...++.+++- ++-+......
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~-~v~~~d~~~~~~~~~~~~--------g~~~~~s~~e~~~~~--dvvi~~v~~~~~ 70 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGY-EVTVYDRSPEKAEALAEA--------GAEVADSPAEAAEQA--DVVILCVPDDDA 70 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTT-EEEEEESSHHHHHHHHHT--------TEEEESSHHHHHHHB--SEEEE-SSSHHH
T ss_pred CEEEEEchHHHHHHHHHHHHhcCC-eEEeeccchhhhhhhHHh--------hhhhhhhhhhHhhcc--cceEeecccchh
Confidence 479999999999999999999998 588877442111111100 111111122222222 2222222211
Q ss_pred CCCCcc---hHhhcccccEEEE-ccCCHHHHHHHHHHHHhcCCCEEEeccccc
Q 008516 91 VKDPKF---NVEFFKQFNVVLN-GLDNLDARRHVNRLCLAADVPLVESGTTGF 139 (563)
Q Consensus 91 i~~~~~---~~~~~~~~dvVi~-alDn~~ar~~in~~c~~~~~pli~~gt~G~ 139 (563)
+.+-.+ -......=.++|+ ++-+++.-+.+.+.+...++.++++...|.
T Consensus 71 v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapV~Gg 123 (163)
T PF03446_consen 71 VEAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKGVRYVDAPVSGG 123 (163)
T ss_dssp HHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEEEEEEESH
T ss_pred hhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhccceeeeeeeecc
Confidence 000000 1122334456666 445566677778888888888888887764
No 114
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=93.78 E-value=0.54 Score=53.15 Aligned_cols=82 Identities=16% Similarity=0.245 Sum_probs=50.5
Q ss_pred HcCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhh-------CCC
Q 008516 10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKF-------RPQ 81 (563)
Q Consensus 10 L~~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~-------np~ 81 (563)
-.++.|+|.|+ |+||..+++.|+..|. ++++++.+. .|.+.+.+.+.++ .+.
T Consensus 78 ~~gKvVLVTGATGgIG~aLAr~LLk~G~-~Vval~Rn~-------------------ekl~~l~~~l~~~~L~~~Ga~~~ 137 (576)
T PLN03209 78 KDEDLAFVAGATGKVGSRTVRELLKLGF-RVRAGVRSA-------------------QRAESLVQSVKQMKLDVEGTQPV 137 (576)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-eEEEEeCCH-------------------HHHHHHHHHhhhhcccccccccc
Confidence 35567889985 9999999999999996 566654321 2233333332221 112
Q ss_pred ceEEEeccCCCCCcchHhhcccccEEEEcc
Q 008516 82 MSITAHHANVKDPKFNVEFFKQFNVVLNGL 111 (563)
Q Consensus 82 v~I~~~~~~i~~~~~~~~~~~~~dvVi~al 111 (563)
.+++.+..++.+...-.+.+.+.|+||++.
T Consensus 138 ~~v~iV~gDLtD~esI~~aLggiDiVVn~A 167 (576)
T PLN03209 138 EKLEIVECDLEKPDQIGPALGNASVVICCI 167 (576)
T ss_pred CceEEEEecCCCHHHHHHHhcCCCEEEEcc
Confidence 245666667754332345578899999875
No 115
>PRK05854 short chain dehydrogenase; Provisional
Probab=93.78 E-value=0.24 Score=51.52 Aligned_cols=63 Identities=19% Similarity=0.394 Sum_probs=42.8
Q ss_pred HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEe
Q 008516 9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH 87 (563)
Q Consensus 9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~ 87 (563)
.|++++++|.| .||||.++++.|+..|. ++.+++.+ ..|.+.+.+.+.+.+|+.++..+
T Consensus 11 ~l~gk~~lITGas~GIG~~~a~~La~~G~-~Vil~~R~-------------------~~~~~~~~~~l~~~~~~~~v~~~ 70 (313)
T PRK05854 11 DLSGKRAVVTGASDGLGLGLARRLAAAGA-EVILPVRN-------------------RAKGEAAVAAIRTAVPDAKLSLR 70 (313)
T ss_pred ccCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCC-------------------HHHHHHHHHHHHHhCCCCceEEE
Confidence 46778899998 68999999999999996 67776532 13444455555555555555555
Q ss_pred ccCC
Q 008516 88 HANV 91 (563)
Q Consensus 88 ~~~i 91 (563)
..++
T Consensus 71 ~~Dl 74 (313)
T PRK05854 71 ALDL 74 (313)
T ss_pred EecC
Confidence 4444
No 116
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=93.76 E-value=0.67 Score=51.76 Aligned_cols=164 Identities=17% Similarity=0.209 Sum_probs=82.7
Q ss_pred CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccCCC
Q 008516 13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVK 92 (563)
Q Consensus 13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~i~ 92 (563)
++|.|||+|.+|+.++.+|+..|+ .+++.|.+.=....+.+ ....+.+.+..+.. .... ...++.
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~-~V~v~D~~~~~~~~~~~------------~~~~~~~~~~~l~~-~~~~-~~g~i~ 69 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGI-DVAVFDPHPEAERIIGE------------VLANAERAYAMLTD-APLP-PEGRLT 69 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHH------------HHHHHHHHHhhhcc-chhh-hhhceE
Confidence 479999999999999999999998 68898864322111100 00000111111100 0000 000110
Q ss_pred CCcchHhhcccccEEEEccCC-HHHHHHH-HHHHHh-cCCCEEEecccccee-eEEEEeCCCCccccccCCCCCCCCCce
Q 008516 93 DPKFNVEFFKQFNVVLNGLDN-LDARRHV-NRLCLA-ADVPLVESGTTGFLG-QVTVHVKGKTECYECQPKPAPKTYPVC 168 (563)
Q Consensus 93 ~~~~~~~~~~~~dvVi~alDn-~~ar~~i-n~~c~~-~~~pli~~gt~G~~G-~v~v~~~~~t~Cy~C~~~~~~~~~p~c 168 (563)
-.....+.++++|+|+.++-. .+.+..+ .++... ..-.+|.+.|.|..- .+.-.......++..++-.++...|.-
T Consensus 70 ~~~~~~ea~~~aD~Vieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi~~s~l~~~~~~~~r~~~~hP~nP~~~~~Lv 149 (495)
T PRK07531 70 FCASLAEAVAGADWIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLPSDLQEGMTHPERLFVAHPYNPVYLLPLV 149 (495)
T ss_pred eeCCHHHHhcCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcceEEEEecCCCcccCceE
Confidence 001123567899999998744 3334332 332211 222478888877431 111112233344444443334444555
Q ss_pred eeccCCCCchhHHHHHHHHHHHHH
Q 008516 169 TITSTPSKFVHCIVWAKDLLFAKL 192 (563)
Q Consensus 169 ti~~~p~~~~hci~~a~~~lf~~l 192 (563)
.+...+......+..+++ +++.+
T Consensus 150 evv~g~~t~~e~~~~~~~-~~~~l 172 (495)
T PRK07531 150 ELVGGGKTSPETIRRAKE-ILREI 172 (495)
T ss_pred EEcCCCCCCHHHHHHHHH-HHHHc
Confidence 565655555666888887 46543
No 117
>PRK09242 tropinone reductase; Provisional
Probab=93.70 E-value=0.27 Score=49.04 Aligned_cols=65 Identities=28% Similarity=0.424 Sum_probs=46.8
Q ss_pred HHcCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEe
Q 008516 9 AIKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH 87 (563)
Q Consensus 9 kL~~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~ 87 (563)
++++++++|+|+ ||||.++++.|+..|. ++.+++.+ ..+.+.+.+.+...+|+.++..+
T Consensus 6 ~~~~k~~lItGa~~gIG~~~a~~l~~~G~-~v~~~~r~-------------------~~~~~~~~~~l~~~~~~~~~~~~ 65 (257)
T PRK09242 6 RLDGQTALITGASKGIGLAIAREFLGLGA-DVLIVARD-------------------ADALAQARDELAEEFPEREVHGL 65 (257)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCC-------------------HHHHHHHHHHHHhhCCCCeEEEE
Confidence 367889999985 8999999999999997 57777632 12344455566666677777777
Q ss_pred ccCCCC
Q 008516 88 HANVKD 93 (563)
Q Consensus 88 ~~~i~~ 93 (563)
..++.+
T Consensus 66 ~~Dl~~ 71 (257)
T PRK09242 66 AADVSD 71 (257)
T ss_pred ECCCCC
Confidence 766643
No 118
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.63 E-value=0.14 Score=52.95 Aligned_cols=34 Identities=18% Similarity=0.333 Sum_probs=31.0
Q ss_pred HHcCCcEEEECCcH-HHHHHHHHHHHhCCCeEEEEe
Q 008516 9 AIKGAKVLMVGAGG-IGCELLKTLALSGFQDIHIID 43 (563)
Q Consensus 9 kL~~~~VlvvGaGg-iG~ellknLal~Gvg~I~iiD 43 (563)
.+++++|+|+|+|+ +|..++..|...|. .+++.+
T Consensus 156 ~l~Gk~vvViG~gg~vGkpia~~L~~~ga-tVtv~~ 190 (283)
T PRK14192 156 ELAGKHAVVVGRSAILGKPMAMMLLNANA-TVTICH 190 (283)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHhCCC-EEEEEe
Confidence 36788999999999 99999999999998 899886
No 119
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.63 E-value=0.57 Score=48.34 Aligned_cols=33 Identities=33% Similarity=0.563 Sum_probs=29.4
Q ss_pred CCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516 12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD 45 (563)
Q Consensus 12 ~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D 45 (563)
-++|.|||+|.+|..++.+|+..|. .++++|.+
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~G~-~V~l~d~~ 36 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALAGY-DVLLNDVS 36 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCC
Confidence 3689999999999999999999997 68888854
No 120
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=93.62 E-value=0.33 Score=50.57 Aligned_cols=33 Identities=18% Similarity=0.354 Sum_probs=29.4
Q ss_pred CCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516 12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD 45 (563)
Q Consensus 12 ~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D 45 (563)
.++|.|+|+|.+|+.+++.|+..|. .+++.|.+
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G~-~V~~~~r~ 36 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANGH-RVRVWSRR 36 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 4689999999999999999999996 68888865
No 121
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.62 E-value=0.39 Score=49.48 Aligned_cols=33 Identities=33% Similarity=0.660 Sum_probs=29.3
Q ss_pred CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCc
Q 008516 13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT 46 (563)
Q Consensus 13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~ 46 (563)
++|.|||+|.+|..++.+|+..|. +++++|.+.
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~-~V~~~d~~~ 34 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGF-QTTLVDIKQ 34 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCC-cEEEEeCCH
Confidence 479999999999999999999997 688988654
No 122
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=93.56 E-value=0.58 Score=47.63 Aligned_cols=133 Identities=21% Similarity=0.247 Sum_probs=76.4
Q ss_pred CcEEEECC-cHHHHHHHHHHHHh-CCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccC
Q 008516 13 AKVLMVGA-GGIGCELLKTLALS-GFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN 90 (563)
Q Consensus 13 ~~VlvvGa-GgiG~ellknLal~-Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~ 90 (563)
.||.|+|+ |.+|..+++.+... ++.-..++|.+.- ...+ + ....+.. ..
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~---~~~~---~---------------------~~~~i~~-~~- 52 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGS---PLVG---Q---------------------GALGVAI-TD- 52 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCc---cccc---c---------------------CCCCccc-cC-
Confidence 48999999 99999999988764 5554555664421 1100 0 0011111 01
Q ss_pred CCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEeccccceeeEEEEeCCCCccccccCCCCCCCCCceee
Q 008516 91 VKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTI 170 (563)
Q Consensus 91 i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~G~~G~v~v~~~~~t~Cy~C~~~~~~~~~p~cti 170 (563)
. -.+.+..+|+|++++ +++.-..+-..|.++++|++-+ ++|+.-. .+ +-... ..+..|+.-.
T Consensus 53 ----d-l~~ll~~~DvVid~t-~p~~~~~~~~~al~~G~~vvig-ttG~s~~---------~~-~~l~~-aa~~~~v~~s 114 (257)
T PRK00048 53 ----D-LEAVLADADVLIDFT-TPEATLENLEFALEHGKPLVIG-TTGFTEE---------QL-AELEE-AAKKIPVVIA 114 (257)
T ss_pred ----C-HHHhccCCCEEEECC-CHHHHHHHHHHHHHcCCCEEEE-CCCCCHH---------HH-HHHHH-HhcCCCEEEE
Confidence 1 134456799999988 4555577788999999999944 6675421 11 00111 1244555555
Q ss_pred ccCCCCchhHHHHHHHHHHHHHhC
Q 008516 171 TSTPSKFVHCIVWAKDLLFAKLFG 194 (563)
Q Consensus 171 ~~~p~~~~hci~~a~~~lf~~lf~ 194 (563)
.|+-..+.--...++. ....|+
T Consensus 115 ~n~s~g~~~~~~l~~~--aa~~l~ 136 (257)
T PRK00048 115 PNFSIGVNLLMKLAEK--AAKYLG 136 (257)
T ss_pred CcchHHHHHHHHHHHH--HHHhcC
Confidence 5655555555566665 235665
No 123
>PLN02240 UDP-glucose 4-epimerase
Probab=93.52 E-value=0.52 Score=49.34 Aligned_cols=33 Identities=33% Similarity=0.691 Sum_probs=28.5
Q ss_pred HcCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEe
Q 008516 10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIID 43 (563)
Q Consensus 10 L~~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD 43 (563)
|++++|+|.|+ |.+|..+++.|+..|. +++++|
T Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~ 36 (352)
T PLN02240 3 LMGRTILVTGGAGYIGSHTVLQLLLAGY-KVVVID 36 (352)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEe
Confidence 56789999985 9999999999999985 677776
No 124
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=93.52 E-value=0.69 Score=48.37 Aligned_cols=78 Identities=17% Similarity=0.264 Sum_probs=48.8
Q ss_pred HcCCcEEEEC-CcHHHHHHHHHHHHhC-CCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEe
Q 008516 10 IKGAKVLMVG-AGGIGCELLKTLALSG-FQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH 87 (563)
Q Consensus 10 L~~~~VlvvG-aGgiG~ellknLal~G-vg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~ 87 (563)
+++++|+|.| +|+||..+++.|+..| ..+++++|.+.- +...+.+.+ +.-+++.+
T Consensus 2 ~~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~-------------------~~~~~~~~~----~~~~~~~v 58 (324)
T TIGR03589 2 FNNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDEL-------------------KQWEMQQKF----PAPCLRFF 58 (324)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChh-------------------HHHHHHHHh----CCCcEEEE
Confidence 3567899998 5899999999999987 457888774321 111111111 11245556
Q ss_pred ccCCCCCcchHhhcccccEEEEc
Q 008516 88 HANVKDPKFNVEFFKQFNVVLNG 110 (563)
Q Consensus 88 ~~~i~~~~~~~~~~~~~dvVi~a 110 (563)
..++.+...-.+.++++|+||.+
T Consensus 59 ~~Dl~d~~~l~~~~~~iD~Vih~ 81 (324)
T TIGR03589 59 IGDVRDKERLTRALRGVDYVVHA 81 (324)
T ss_pred EccCCCHHHHHHHHhcCCEEEEC
Confidence 66665443334566778888884
No 125
>PF05237 MoeZ_MoeB: MoeZ/MoeB domain; InterPro: IPR007901 This putative domain is found in the MoeZ protein and the MoeB protein. The domain has two CXXC motifs that are only partly conserved. MoeZ is necessary for the synthesis of pyridine-2,6-bis(thiocarboxylic acid), a small secreted metabolite that has a high affinity for transition metals, increases iron uptake efficiency by 20% in Pseudomonas stutzeri, has the ability to reduce both soluble and mineral forms of iron, and has antimicrobial activity towards several species of bacteria. MoeB is the molybdopterin synthase activating enzyme in the molybdopterin cofactor biosynthesis pathway. Both these enzymes are members of a superfamily consisting of related but structurally distinct proteins that are members of pathways involved in the transfer of sulphur-containing moieties to metabolites [] and both also contain the UBA/THIF-type NAD/FAD binding fold (IPR000594 from INTERPRO). ; PDB: 1JWA_B 1JW9_B 1JWB_B 1ZKM_D 1ZUD_3 1ZFN_D.
Probab=93.51 E-value=0.11 Score=43.60 Aligned_cols=58 Identities=22% Similarity=0.249 Sum_probs=30.3
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHhcCccc--cceeeecccccccccccccCCCCCCCCcccCCC
Q 008516 374 VHAVATTNAIIAGLIVIEAIKVLLKDTDK--YRMTYCLEHITKKMLLMPVEPYEPNKSCYVCSE 435 (563)
Q Consensus 374 IPAIATTnAiVAGl~vlE~~K~l~~~~~~--~r~~f~~~~~~~~~~~~p~~~~~pn~~C~vC~~ 435 (563)
+.-+.++.++|+++++.|++|+|.|..+. .+-.+++..... +.... ..++|+|.+|+.
T Consensus 23 ~GVlg~~~giigslqA~eaik~l~g~~~~l~~~l~~~D~~~~~---~~~i~-~~k~~~C~~C~~ 82 (84)
T PF05237_consen 23 AGVLGPVVGIIGSLQANEAIKLLLGIGEPLSGKLLTIDLLNMS---FRSIR-IKKNPDCPVCGP 82 (84)
T ss_dssp S-B-HHHHHHHHHHHHHHHHHHHCT-S---BTEEEEEETTTTE---EEEEE-----TT-TTT--
T ss_pred cccccchHHHHHHHHHHHHHHHHHhcCCchhhheeeEECCCCe---EEEEe-cCCCccCcCcCc
Confidence 35678888999999999999999975322 233333322111 11111 236899999985
No 126
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=93.49 E-value=0.29 Score=53.48 Aligned_cols=36 Identities=25% Similarity=0.410 Sum_probs=32.3
Q ss_pred HcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCc
Q 008516 10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT 46 (563)
Q Consensus 10 L~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~ 46 (563)
+.+++|+|+|+|.+|..+++.|...|. +++++|.|.
T Consensus 210 l~Gk~VlViG~G~IG~~vA~~lr~~Ga-~ViV~d~dp 245 (425)
T PRK05476 210 IAGKVVVVAGYGDVGKGCAQRLRGLGA-RVIVTEVDP 245 (425)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCc
Confidence 578899999999999999999999999 798888554
No 127
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=93.44 E-value=0.49 Score=51.65 Aligned_cols=91 Identities=19% Similarity=0.317 Sum_probs=57.9
Q ss_pred CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccCCC
Q 008516 13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVK 92 (563)
Q Consensus 13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~i~ 92 (563)
++|+|+|+|.+|..+++.|...|. .++++|.+. .+.+.++ + ...+..+.++.+
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~-~v~vid~~~-------------------~~~~~~~----~---~~~~~~~~gd~~ 53 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENN-DVTVIDTDE-------------------ERLRRLQ----D---RLDVRTVVGNGS 53 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC-cEEEEECCH-------------------HHHHHHH----h---hcCEEEEEeCCC
Confidence 379999999999999999999987 577887432 1122211 1 112344444443
Q ss_pred CCcchHh-hcccccEEEEccCCHHHHHHHHHHHHhc-CCC
Q 008516 93 DPKFNVE-FFKQFNVVLNGLDNLDARRHVNRLCLAA-DVP 130 (563)
Q Consensus 93 ~~~~~~~-~~~~~dvVi~alDn~~ar~~in~~c~~~-~~p 130 (563)
+...-.+ -++++|.|+.++++...-..+-..++.. +.+
T Consensus 54 ~~~~l~~~~~~~a~~vi~~~~~~~~n~~~~~~~r~~~~~~ 93 (453)
T PRK09496 54 SPDVLREAGAEDADLLIAVTDSDETNMVACQIAKSLFGAP 93 (453)
T ss_pred CHHHHHHcCCCcCCEEEEecCChHHHHHHHHHHHHhcCCC
Confidence 3221122 2678999999998877666666667664 444
No 128
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=93.38 E-value=0.51 Score=44.44 Aligned_cols=94 Identities=26% Similarity=0.359 Sum_probs=59.6
Q ss_pred EEEECC-cHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccCCCC
Q 008516 15 VLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKD 93 (563)
Q Consensus 15 VlvvGa-GgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~i~~ 93 (563)
|+|+|+ |.+|..+++.|...| .+++.+= |. ..|.+. .+ +++....++.+
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~-~~V~~~~---------------R~----~~~~~~--------~~--~~~~~~~d~~d 50 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRG-HEVTALV---------------RS----PSKAED--------SP--GVEIIQGDLFD 50 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT-SEEEEEE---------------SS----GGGHHH--------CT--TEEEEESCTTC
T ss_pred eEEECCCChHHHHHHHHHHHCC-CEEEEEe---------------cC----chhccc--------cc--ccccceeeehh
Confidence 789997 999999999999999 4666631 21 112222 34 45556666654
Q ss_pred CcchHhhcccccEEEEccCC----HHHHHHHHHHHHhcCCCE-EEecccc
Q 008516 94 PKFNVEFFKQFNVVLNGLDN----LDARRHVNRLCLAADVPL-VESGTTG 138 (563)
Q Consensus 94 ~~~~~~~~~~~dvVi~alDn----~~ar~~in~~c~~~~~pl-i~~gt~G 138 (563)
...-.+.++++|.|+.+... ...-..+-+.|...+++- +..++.|
T Consensus 51 ~~~~~~al~~~d~vi~~~~~~~~~~~~~~~~~~a~~~~~~~~~v~~s~~~ 100 (183)
T PF13460_consen 51 PDSVKAALKGADAVIHAAGPPPKDVDAAKNIIEAAKKAGVKRVVYLSSAG 100 (183)
T ss_dssp HHHHHHHHTTSSEEEECCHSTTTHHHHHHHHHHHHHHTTSSEEEEEEETT
T ss_pred hhhhhhhhhhcchhhhhhhhhcccccccccccccccccccccceeeeccc
Confidence 43335567899999998752 333445666677777653 3334344
No 129
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=93.24 E-value=0.24 Score=46.43 Aligned_cols=97 Identities=15% Similarity=0.279 Sum_probs=55.9
Q ss_pred cEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHH--hhCCCceEEEeccCC
Q 008516 14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVL--KFRPQMSITAHHANV 91 (563)
Q Consensus 14 ~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~--~~np~v~I~~~~~~i 91 (563)
||.|+|+|..|+.++..|+..| .++++...|.= ..+.+.+.=. ..-|+.++.. .-.+
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g-~~V~l~~~~~~-------------------~~~~i~~~~~n~~~~~~~~l~~-~i~~ 59 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNG-HEVTLWGRDEE-------------------QIEEINETRQNPKYLPGIKLPE-NIKA 59 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCT-EEEEEETSCHH-------------------HHHHHHHHTSETTTSTTSBEET-TEEE
T ss_pred CEEEECcCHHHHHHHHHHHHcC-CEEEEEeccHH-------------------HHHHHHHhCCCCCCCCCcccCc-cccc
Confidence 6899999999999999999999 57887765541 1111111100 1113322221 1111
Q ss_pred CCCcchHhhcccccEEEEccCCHHHHHHHHHHHH--hcCCCEEE
Q 008516 92 KDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCL--AADVPLVE 133 (563)
Q Consensus 92 ~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~--~~~~pli~ 133 (563)
+. ...+.+++.|+|+.++-....|..+.++.. ..+.+++.
T Consensus 60 t~--dl~~a~~~ad~IiiavPs~~~~~~~~~l~~~l~~~~~ii~ 101 (157)
T PF01210_consen 60 TT--DLEEALEDADIIIIAVPSQAHREVLEQLAPYLKKGQIIIS 101 (157)
T ss_dssp ES--SHHHHHTT-SEEEE-S-GGGHHHHHHHHTTTSHTT-EEEE
T ss_pred cc--CHHHHhCcccEEEecccHHHHHHHHHHHhhccCCCCEEEE
Confidence 21 124678999999999998887877777643 34455554
No 130
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=93.23 E-value=0.82 Score=48.03 Aligned_cols=103 Identities=21% Similarity=0.249 Sum_probs=58.5
Q ss_pred CcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccCC
Q 008516 13 AKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV 91 (563)
Q Consensus 13 ~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~i 91 (563)
++|+|.|+ |-+|+.+++.|...|=-+++.+|...-. + .+..+.-.++.+..++
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r~~~~---~-----------------------~~~~~~~~~~~~~~Dl 55 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILETTDWEVYGMDMQTDR---L-----------------------GDLVNHPRMHFFEGDI 55 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeCcHHH---H-----------------------HHhccCCCeEEEeCCC
Confidence 47999996 9999999999987631367777643210 0 0111112344445555
Q ss_pred C-CCcchHhhcccccEEEEcc--C---------------CHHHHHHHHHHHHhcCCCEEEecccccee
Q 008516 92 K-DPKFNVEFFKQFNVVLNGL--D---------------NLDARRHVNRLCLAADVPLVESGTTGFLG 141 (563)
Q Consensus 92 ~-~~~~~~~~~~~~dvVi~al--D---------------n~~ar~~in~~c~~~~~pli~~gt~G~~G 141 (563)
. +...-.+.++++|+||.+. . |...-..+-+.|++.+..+|..++.+.+|
T Consensus 56 ~~~~~~~~~~~~~~d~ViH~aa~~~~~~~~~~p~~~~~~n~~~~~~ll~aa~~~~~~~v~~SS~~vyg 123 (347)
T PRK11908 56 TINKEWIEYHVKKCDVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYGKHLVFPSTSEVYG 123 (347)
T ss_pred CCCHHHHHHHHcCCCEEEECcccCChHHhhcCcHHHHHHHHHHHHHHHHHHHhcCCeEEEEecceeec
Confidence 3 2111123455677777531 1 11222344556777778899888766554
No 131
>PLN02427 UDP-apiose/xylose synthase
Probab=93.21 E-value=0.43 Score=51.03 Aligned_cols=114 Identities=19% Similarity=0.271 Sum_probs=64.2
Q ss_pred HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEe
Q 008516 9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH 87 (563)
Q Consensus 9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~ 87 (563)
+++.+||+|.| +|-||+.+++.|+..|--++..+|...- .+ ++ +.. .|. ....+ +++.+
T Consensus 11 ~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~---~~-~~-l~~---~~~----------~~~~~--~~~~~ 70 (386)
T PLN02427 11 PIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYND---KI-KH-LLE---PDT----------VPWSG--RIQFH 70 (386)
T ss_pred cccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCch---hh-hh-hhc---ccc----------ccCCC--CeEEE
Confidence 56678999999 5999999999999885236777774311 00 00 000 000 00111 35555
Q ss_pred ccCCCCCcchHhhcccccEEEEccC---------C--------HHHHHHHHHHHHhcCCCEEEeccccceee
Q 008516 88 HANVKDPKFNVEFFKQFNVVLNGLD---------N--------LDARRHVNRLCLAADVPLVESGTTGFLGQ 142 (563)
Q Consensus 88 ~~~i~~~~~~~~~~~~~dvVi~alD---------n--------~~ar~~in~~c~~~~~pli~~gt~G~~G~ 142 (563)
..++.+...-.+.++++|+||.+.. + ...-..+-+.|++.++.+|..++.+.+|.
T Consensus 71 ~~Dl~d~~~l~~~~~~~d~ViHlAa~~~~~~~~~~~~~~~~~n~~gt~~ll~aa~~~~~r~v~~SS~~vYg~ 142 (386)
T PLN02427 71 RINIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGK 142 (386)
T ss_pred EcCCCChHHHHHHhhcCCEEEEcccccChhhhhhChHHHHHHHHHHHHHHHHHHHhcCCEEEEEeeeeeeCC
Confidence 5566443222345667888887431 0 00111223456667788998888776664
No 132
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=93.18 E-value=0.58 Score=50.96 Aligned_cols=36 Identities=22% Similarity=0.417 Sum_probs=31.6
Q ss_pred HcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCc
Q 008516 10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT 46 (563)
Q Consensus 10 L~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~ 46 (563)
+.+.+|+|+|+|.+|..+++.+...|. +++++|.|.
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~ 235 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDP 235 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECCh
Confidence 467899999999999999999999999 688887543
No 133
>PRK08251 short chain dehydrogenase; Provisional
Probab=93.15 E-value=0.51 Score=46.63 Aligned_cols=62 Identities=21% Similarity=0.426 Sum_probs=43.9
Q ss_pred CCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccC
Q 008516 12 GAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN 90 (563)
Q Consensus 12 ~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~ 90 (563)
+++++|.| .||||.++++.|+..|. ++.+++.+. .+.+.+.+.+.+.+|..+++.+..+
T Consensus 2 ~k~vlItGas~giG~~la~~l~~~g~-~v~~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~D 61 (248)
T PRK08251 2 RQKILITGASSGLGAGMAREFAAKGR-DLALCARRT-------------------DRLEELKAELLARYPGIKVAVAALD 61 (248)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCH-------------------HHHHHHHHHHHhhCCCceEEEEEcC
Confidence 56788987 89999999999999995 677776431 2333444555566677777777766
Q ss_pred CCC
Q 008516 91 VKD 93 (563)
Q Consensus 91 i~~ 93 (563)
+++
T Consensus 62 ~~~ 64 (248)
T PRK08251 62 VND 64 (248)
T ss_pred CCC
Confidence 643
No 134
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=93.11 E-value=0.38 Score=52.52 Aligned_cols=108 Identities=22% Similarity=0.275 Sum_probs=74.9
Q ss_pred CcEEEECCcHHHH-HHHHHHHH----hCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEe
Q 008516 13 AKVLMVGAGGIGC-ELLKTLAL----SGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH 87 (563)
Q Consensus 13 ~~VlvvGaGgiG~-ellknLal----~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~ 87 (563)
.||.|||+|+.-+ ++.+.|+. .++++|.++|-|. ...|+.- ...+++.+.+..+.++|+..
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~--~~rl~~v------------~~~~~~~~~~~~~~~~v~~t 66 (419)
T cd05296 1 MKLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDE--EEKLEIV------------GALAKRMVKKAGLPIKVHLT 66 (419)
T ss_pred CEEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCCh--HHHHHHH------------HHHHHHHHHhhCCCeEEEEe
Confidence 4799999999855 77888776 4678999999764 3333221 23456666777778888776
Q ss_pred ccCCCCCcchHhhcccccEEEEcc--CCHHHHHHHHHHHHhcCCCEEEeccccceeeE
Q 008516 88 HANVKDPKFNVEFFKQFNVVLNGL--DNLDARRHVNRLCLAADVPLVESGTTGFLGQV 143 (563)
Q Consensus 88 ~~~i~~~~~~~~~~~~~dvVi~al--Dn~~ar~~in~~c~~~~~pli~~gt~G~~G~v 143 (563)
.+. .+-++++|+||++. ...++|..-.+...++|+- -..|.|..|-.
T Consensus 67 ~d~-------~~al~gadfVi~~~~vg~~~~r~~de~i~~~~Gi~--gqET~G~GG~~ 115 (419)
T cd05296 67 TDR-------REALEGADFVFTQIRVGGLEARALDERIPLKHGVI--GQETTGAGGFA 115 (419)
T ss_pred CCH-------HHHhCCCCEEEEEEeeCCcchhhhhhhhHHHcCCc--cccCCCcchHH
Confidence 542 46688999999963 4456777777778888763 35677766643
No 135
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.08 E-value=0.28 Score=48.33 Aligned_cols=35 Identities=26% Similarity=0.552 Sum_probs=29.9
Q ss_pred HcCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516 10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMD 45 (563)
Q Consensus 10 L~~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~D 45 (563)
+++++++|.|+ |++|.++++.|+..|.. +++++.+
T Consensus 3 ~~~~~vlItGasg~iG~~l~~~l~~~G~~-V~~~~r~ 38 (251)
T PRK07231 3 LEGKVAIVTGASSGIGEGIARRFAAEGAR-VVVTDRN 38 (251)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCC
Confidence 56789999995 89999999999999975 8887644
No 136
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.06 E-value=0.36 Score=50.65 Aligned_cols=74 Identities=19% Similarity=0.220 Sum_probs=50.0
Q ss_pred CCcEEEECCcHHHHHHHHHHHHhCCC-eEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC---ceEEEe
Q 008516 12 GAKVLMVGAGGIGCELLKTLALSGFQ-DIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ---MSITAH 87 (563)
Q Consensus 12 ~~~VlvvGaGgiG~ellknLal~Gvg-~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~---v~I~~~ 87 (563)
..||.|||+|.+|+.++-.|+..|.. +|.|+|.. +.|++..+.-+....|. .+|...
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~-------------------~~~~~g~a~Dl~~~~~~~~~~~v~~~ 63 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVV-------------------EDKLKGEAMDLQHGSAFLKNPKIEAD 63 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC-------------------ccHHHHHHHHHHHhhccCCCCEEEEC
Confidence 46899999999999999999999985 69999832 23444444555544432 233321
Q ss_pred ccCCCCCcchHhhcccccEEEEccC
Q 008516 88 HANVKDPKFNVEFFKQFNVVLNGLD 112 (563)
Q Consensus 88 ~~~i~~~~~~~~~~~~~dvVi~alD 112 (563)
. +.+-++++|+||.+..
T Consensus 64 -~-------dy~~~~~adivvitaG 80 (312)
T cd05293 64 -K-------DYSVTANSKVVIVTAG 80 (312)
T ss_pred -C-------CHHHhCCCCEEEECCC
Confidence 1 1234799999988644
No 137
>PLN02602 lactate dehydrogenase
Probab=93.04 E-value=0.32 Score=51.86 Aligned_cols=73 Identities=15% Similarity=0.260 Sum_probs=49.7
Q ss_pred CcEEEECCcHHHHHHHHHHHHhCC-CeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCC---CceEEEec
Q 008516 13 AKVLMVGAGGIGCELLKTLALSGF-QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRP---QMSITAHH 88 (563)
Q Consensus 13 ~~VlvvGaGgiG~ellknLal~Gv-g~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np---~v~I~~~~ 88 (563)
.||.|||+|.+|+.++-.|+..|+ ++|.|+|- .+.|++..+.-+....| .++|...
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi-------------------~~~~~~g~a~DL~~~~~~~~~~~i~~~- 97 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDV-------------------NPDKLRGEMLDLQHAAAFLPRTKILAS- 97 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeC-------------------CCchhhHHHHHHHhhhhcCCCCEEEeC-
Confidence 699999999999999999999998 57999983 22344444444444332 2344321
Q ss_pred cCCCCCcchHhhcccccEEEEccC
Q 008516 89 ANVKDPKFNVEFFKQFNVVLNGLD 112 (563)
Q Consensus 89 ~~i~~~~~~~~~~~~~dvVi~alD 112 (563)
. +.+.++++|+||.+..
T Consensus 98 ~-------dy~~~~daDiVVitAG 114 (350)
T PLN02602 98 T-------DYAVTAGSDLCIVTAG 114 (350)
T ss_pred C-------CHHHhCCCCEEEECCC
Confidence 1 1344899999998754
No 138
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=92.97 E-value=0.2 Score=42.41 Aligned_cols=89 Identities=21% Similarity=0.266 Sum_probs=54.4
Q ss_pred cEEEECCcHHHHHHHHHHHHhCC--CeEEEE-eCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccC
Q 008516 14 KVLMVGAGGIGCELLKTLALSGF--QDIHII-DMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN 90 (563)
Q Consensus 14 ~VlvvGaGgiG~ellknLal~Gv--g~I~ii-D~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~ 90 (563)
||.++|+|.+|..+++.|+..|+ .++.++ +. ...|+..+++ ..+ +.+..
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r-------------------~~~~~~~~~~----~~~-~~~~~---- 52 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSR-------------------SPEKAAELAK----EYG-VQATA---- 52 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEES-------------------SHHHHHHHHH----HCT-TEEES----
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccC-------------------cHHHHHHHHH----hhc-ccccc----
Confidence 68899999999999999999995 345543 31 1123222222 222 22211
Q ss_pred CCCCcchHhhcccccEEEEccCCHHHHHHHHHH-HHhcCCCEEEe
Q 008516 91 VKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRL-CLAADVPLVES 134 (563)
Q Consensus 91 i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~-c~~~~~pli~~ 134 (563)
....+..+..|+|+.|+........+.++ ....++-+|+.
T Consensus 53 ----~~~~~~~~~advvilav~p~~~~~v~~~i~~~~~~~~vis~ 93 (96)
T PF03807_consen 53 ----DDNEEAAQEADVVILAVKPQQLPEVLSEIPHLLKGKLVISI 93 (96)
T ss_dssp ----EEHHHHHHHTSEEEE-S-GGGHHHHHHHHHHHHTTSEEEEE
T ss_pred ----CChHHhhccCCEEEEEECHHHHHHHHHHHhhccCCCEEEEe
Confidence 01356788999999999877777766666 34455555554
No 139
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=92.97 E-value=0.5 Score=49.73 Aligned_cols=81 Identities=19% Similarity=0.204 Sum_probs=54.7
Q ss_pred HHHHHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEE
Q 008516 6 QLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSIT 85 (563)
Q Consensus 6 ~q~kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~ 85 (563)
..+.|++++|.|||.|.+|..+++||..+|+ ++++.|.. + ++...++ . .+..+.
T Consensus 10 ~~~~LkgKtVGIIG~GsIG~amA~nL~d~G~-~ViV~~r~------------------~--~s~~~A~---~--~G~~v~ 63 (335)
T PRK13403 10 NVELLQGKTVAVIGYGSQGHAQAQNLRDSGV-EVVVGVRP------------------G--KSFEVAK---A--DGFEVM 63 (335)
T ss_pred ChhhhCcCEEEEEeEcHHHHHHHHHHHHCcC-EEEEEECc------------------c--hhhHHHH---H--cCCEEC
Confidence 4678999999999999999999999999998 56665411 1 1111011 1 122211
Q ss_pred EeccCCCCCcchHhhcccccEEEEccCCHHHHHHHHH
Q 008516 86 AHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNR 122 (563)
Q Consensus 86 ~~~~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~ 122 (563)
. -.+.+++.|+|+..+-+...+..++.
T Consensus 64 ----s------l~Eaak~ADVV~llLPd~~t~~V~~~ 90 (335)
T PRK13403 64 ----S------VSEAVRTAQVVQMLLPDEQQAHVYKA 90 (335)
T ss_pred ----C------HHHHHhcCCEEEEeCCChHHHHHHHH
Confidence 1 25778999999998877666665554
No 140
>PRK08618 ornithine cyclodeaminase; Validated
Probab=92.91 E-value=0.5 Score=49.74 Aligned_cols=77 Identities=10% Similarity=0.170 Sum_probs=54.2
Q ss_pred cCCcEEEECCcHHHHHHHHHHH-HhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEecc
Q 008516 11 KGAKVLMVGAGGIGCELLKTLA-LSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA 89 (563)
Q Consensus 11 ~~~~VlvvGaGgiG~ellknLa-l~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~ 89 (563)
...+++|+|+|+.|-..+..+. ..|+.++.++|.+ ..|++..++.++... .+++..+..
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~-------------------~~~a~~~~~~~~~~~-~~~~~~~~~ 185 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRT-------------------FEKAYAFAQEIQSKF-NTEIYVVNS 185 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCC-------------------HHHHHHHHHHHHHhc-CCcEEEeCC
Confidence 4678999999999999988875 5689999998633 346777777665432 233333211
Q ss_pred CCCCCcchHhhcccccEEEEccCCH
Q 008516 90 NVKDPKFNVEFFKQFNVVLNGLDNL 114 (563)
Q Consensus 90 ~i~~~~~~~~~~~~~dvVi~alDn~ 114 (563)
..+.+++.|+|++|+.+.
T Consensus 186 -------~~~~~~~aDiVi~aT~s~ 203 (325)
T PRK08618 186 -------ADEAIEEADIIVTVTNAK 203 (325)
T ss_pred -------HHHHHhcCCEEEEccCCC
Confidence 145668999999999765
No 141
>PRK14982 acyl-ACP reductase; Provisional
Probab=92.86 E-value=0.45 Score=50.50 Aligned_cols=36 Identities=28% Similarity=0.511 Sum_probs=31.4
Q ss_pred HHcCCcEEEECC-cHHHHHHHHHHHH-hCCCeEEEEeC
Q 008516 9 AIKGAKVLMVGA-GGIGCELLKTLAL-SGFQDIHIIDM 44 (563)
Q Consensus 9 kL~~~~VlvvGa-GgiG~ellknLal-~Gvg~I~iiD~ 44 (563)
.|++++|+|+|+ |.+|+++++.|+. .|+.++++++.
T Consensus 152 ~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R 189 (340)
T PRK14982 152 DLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVAR 189 (340)
T ss_pred CcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcC
Confidence 467899999998 8999999999985 58899998764
No 142
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=92.85 E-value=0.13 Score=51.99 Aligned_cols=57 Identities=21% Similarity=0.201 Sum_probs=37.5
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHhcCccc--cceeeecccccccccccccCCCCCCCCcccC
Q 008516 373 IVHAVATTNAIIAGLIVIEAIKVLLKDTDK--YRMTYCLEHITKKMLLMPVEPYEPNKSCYVC 433 (563)
Q Consensus 373 IIPAIATTnAiVAGl~vlE~~K~l~~~~~~--~r~~f~~~~~~~~~~~~p~~~~~pn~~C~vC 433 (563)
..+.++.++++||++++.|++|+|.|..+. .|-..++...... ....-+++|+|++|
T Consensus 182 ~~gv~~p~~~~~~~~~a~e~ik~l~g~~~~l~g~ll~~d~~~~~~----~~~~~~~~~~C~~C 240 (240)
T TIGR02355 182 EAGVMAPVVGVVGSLQAMEAIKVLAGIGKPLSGKILMIDAMTMSF----REMKLPKNPTCPVC 240 (240)
T ss_pred ccCccchHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEEECCCCEE----EEEeccCCccCCCC
Confidence 456788899999999999999999975433 2333343321111 11223568999998
No 143
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=92.80 E-value=0.45 Score=46.83 Aligned_cols=35 Identities=31% Similarity=0.577 Sum_probs=29.8
Q ss_pred HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516 10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD 45 (563)
Q Consensus 10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D 45 (563)
+++++|+|.| .|++|..+++.|+..|. ++.+++.+
T Consensus 4 ~~~~~ilItGasg~iG~~l~~~l~~~g~-~V~~~~r~ 39 (251)
T PRK12826 4 LEGRVALVTGAARGIGRAIAVRLAADGA-EVIVVDIC 39 (251)
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeCC
Confidence 5678899998 69999999999999997 67777654
No 144
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=92.77 E-value=0.19 Score=42.13 Aligned_cols=35 Identities=34% Similarity=0.545 Sum_probs=32.8
Q ss_pred HcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516 10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM 44 (563)
Q Consensus 10 L~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~ 44 (563)
+..++++|+|+|+.|..++..|...|..++++.|.
T Consensus 21 ~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 21 LKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 67899999999999999999999998889999987
No 145
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=92.74 E-value=1.1 Score=46.60 Aligned_cols=33 Identities=30% Similarity=0.506 Sum_probs=29.5
Q ss_pred CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCc
Q 008516 13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT 46 (563)
Q Consensus 13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~ 46 (563)
.+|.|||+|.+|+.++.+|+..|. +++++|.+.
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~-~V~v~d~~~ 35 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGH-EVRLWDADP 35 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCC-eeEEEeCCH
Confidence 379999999999999999999997 699998664
No 146
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=92.72 E-value=0.49 Score=47.08 Aligned_cols=35 Identities=29% Similarity=0.529 Sum_probs=29.7
Q ss_pred HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516 9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM 44 (563)
Q Consensus 9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~ 44 (563)
.+.+++|+|.| .|++|.++++.|+..|. ++.++|.
T Consensus 7 ~~~~k~vlItGa~g~iG~~ia~~l~~~G~-~V~~~~r 42 (255)
T PRK07523 7 DLTGRRALVTGSSQGIGYALAEGLAQAGA-EVILNGR 42 (255)
T ss_pred CCCCCEEEEECCcchHHHHHHHHHHHcCC-EEEEEeC
Confidence 36788999998 59999999999999997 5777664
No 147
>PRK07831 short chain dehydrogenase; Provisional
Probab=92.70 E-value=0.48 Score=47.43 Aligned_cols=34 Identities=32% Similarity=0.494 Sum_probs=28.5
Q ss_pred HHcCCcEEEECC-c-HHHHHHHHHHHHhCCCeEEEEe
Q 008516 9 AIKGAKVLMVGA-G-GIGCELLKTLALSGFQDIHIID 43 (563)
Q Consensus 9 kL~~~~VlvvGa-G-giG~ellknLal~Gvg~I~iiD 43 (563)
.+.+++++|.|+ | |||..+++.|+..|.. +.++|
T Consensus 14 ~~~~k~vlItG~sg~gIG~~ia~~l~~~G~~-V~~~~ 49 (262)
T PRK07831 14 LLAGKVVLVTAAAGTGIGSATARRALEEGAR-VVISD 49 (262)
T ss_pred ccCCCEEEEECCCcccHHHHHHHHHHHcCCE-EEEEe
Confidence 456789999997 6 8999999999999974 77765
No 148
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=92.70 E-value=0.8 Score=47.20 Aligned_cols=106 Identities=18% Similarity=0.275 Sum_probs=67.6
Q ss_pred HHHcCCcEEEECCcHHHHHHHHHHHHh----CC------CeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHh
Q 008516 8 EAIKGAKVLMVGAGGIGCELLKTLALS----GF------QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLK 77 (563)
Q Consensus 8 ~kL~~~~VlvvGaGgiG~ellknLal~----Gv------g~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~ 77 (563)
.+|.+.||+++|+|+-|.-+++.|... |+ ++|.++|.+-+=..+ | .|.-..|..-++ .
T Consensus 21 ~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~--r------~~l~~~~~~~a~----~ 88 (279)
T cd05312 21 KPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKD--R------KDLTPFKKPFAR----K 88 (279)
T ss_pred CChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCC--C------CcchHHHHHHHh----h
Confidence 468899999999999999999999988 99 699999977542211 1 123333333222 2
Q ss_pred hCCCceEEEeccCCCCCcchHhhcc--cccEEEEccC--CHHHHHHHHHHHHhcCCCEEEecc
Q 008516 78 FRPQMSITAHHANVKDPKFNVEFFK--QFNVVLNGLD--NLDARRHVNRLCLAADVPLVESGT 136 (563)
Q Consensus 78 ~np~v~I~~~~~~i~~~~~~~~~~~--~~dvVi~alD--n~~ar~~in~~c~~~~~pli~~gt 136 (563)
.++ ... ..-.+.++ +.|++|.+.. ..=.+..|-.|+.....|+|..-+
T Consensus 89 ~~~--------~~~---~~L~e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLS 140 (279)
T cd05312 89 DEE--------KEG---KSLLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSNERPIIFALS 140 (279)
T ss_pred cCc--------ccC---CCHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCCCCEEEECC
Confidence 222 000 11245566 6788777542 333466777777777788887654
No 149
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.67 E-value=0.46 Score=52.56 Aligned_cols=35 Identities=23% Similarity=0.371 Sum_probs=31.0
Q ss_pred HcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516 10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD 45 (563)
Q Consensus 10 L~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D 45 (563)
+...+|+|+|+|++|.+++..|...|. +++++|..
T Consensus 14 ~~~~~v~viG~G~~G~~~A~~L~~~G~-~V~~~d~~ 48 (480)
T PRK01438 14 WQGLRVVVAGLGVSGFAAADALLELGA-RVTVVDDG 48 (480)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 457799999999999999999999997 59998854
No 150
>PRK05875 short chain dehydrogenase; Provisional
Probab=92.64 E-value=0.54 Score=47.37 Aligned_cols=35 Identities=23% Similarity=0.413 Sum_probs=29.8
Q ss_pred HHcCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeC
Q 008516 9 AIKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDM 44 (563)
Q Consensus 9 kL~~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~ 44 (563)
.+++++++|.|+ |+||.++++.|+..|. ++.+++.
T Consensus 4 ~~~~k~vlItGasg~IG~~la~~l~~~G~-~V~~~~r 39 (276)
T PRK05875 4 SFQDRTYLVTGGGSGIGKGVAAGLVAAGA-AVMIVGR 39 (276)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEeC
Confidence 367889999996 8999999999999998 6777653
No 151
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=92.54 E-value=0.83 Score=48.09 Aligned_cols=35 Identities=31% Similarity=0.292 Sum_probs=29.2
Q ss_pred HcCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516 10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMD 45 (563)
Q Consensus 10 L~~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~D 45 (563)
+++++|+|.|+ |.||+.+++.|+..|. +++++|.+
T Consensus 2 ~~~k~ilItGatG~IG~~l~~~L~~~G~-~V~~~~r~ 37 (349)
T TIGR02622 2 WQGKKVLVTGHTGFKGSWLSLWLLELGA-EVYGYSLD 37 (349)
T ss_pred cCCCEEEEECCCChhHHHHHHHHHHCCC-EEEEEeCC
Confidence 45789999995 8899999999999995 57777654
No 152
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=92.47 E-value=0.69 Score=50.82 Aligned_cols=107 Identities=18% Similarity=0.259 Sum_probs=75.0
Q ss_pred CcEEEECCcHH-HHHHHHHHHHh----CCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEe
Q 008516 13 AKVLMVGAGGI-GCELLKTLALS----GFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH 87 (563)
Q Consensus 13 ~~VlvvGaGgi-G~ellknLal~----Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~ 87 (563)
.||.|||+|+. +-++++.|+.. ++++|+++|-|. ..|.+ =...+++.+++..+.++|++.
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~DId~---~rl~~------------v~~l~~~~~~~~g~~~~v~~T 65 (437)
T cd05298 1 FKIVIAGGGSTYTPGIVKSLLDRKEDFPLRELVLYDIDA---ERQEK------------VAEAVKILFKENYPEIKFVYT 65 (437)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCcccCCCCEEEEECCCH---HHHHH------------HHHHHHHHHHhhCCCeEEEEE
Confidence 48999999987 34677777644 467999999554 22222 123455556667778888876
Q ss_pred ccCCCCCcchHhhcccccEEEEc--cCCHHHHHHHHHHHHhcCCCEEEeccccceeeE
Q 008516 88 HANVKDPKFNVEFFKQFNVVLNG--LDNLDARRHVNRLCLAADVPLVESGTTGFLGQV 143 (563)
Q Consensus 88 ~~~i~~~~~~~~~~~~~dvVi~a--lDn~~ar~~in~~c~~~~~pli~~gt~G~~G~v 143 (563)
.+. .+-++++|+||++ ....++|..--+...++|+ +-..|.|..|-.
T Consensus 66 tdr-------~eAl~gADfVi~~irvGg~~~r~~De~Ip~kyGi--~gqET~G~GG~~ 114 (437)
T cd05298 66 TDP-------EEAFTDADFVFAQIRVGGYAMREQDEKIPLKHGV--VGQETCGPGGFA 114 (437)
T ss_pred CCH-------HHHhCCCCEEEEEeeeCCchHHHHHHhHHHHcCc--ceecCccHHHHH
Confidence 543 4668999999996 4666888888888999996 544676776643
No 153
>PRK07062 short chain dehydrogenase; Provisional
Probab=92.44 E-value=0.52 Score=47.22 Aligned_cols=64 Identities=22% Similarity=0.335 Sum_probs=44.7
Q ss_pred HcCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEec
Q 008516 10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH 88 (563)
Q Consensus 10 L~~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~ 88 (563)
++++.++|.|+ ||||.++++.|+..|. ++.+++.+. .+.+.+.+.+.+..|..++..+.
T Consensus 6 l~~k~~lItGas~giG~~ia~~l~~~G~-~V~~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~~~ 65 (265)
T PRK07062 6 LEGRVAVVTGGSSGIGLATVELLLEAGA-SVAICGRDE-------------------ERLASAEARLREKFPGARLLAAR 65 (265)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCH-------------------HHHHHHHHHHHhhCCCceEEEEE
Confidence 66788999985 7999999999999998 477766431 23444455555556666666666
Q ss_pred cCCCC
Q 008516 89 ANVKD 93 (563)
Q Consensus 89 ~~i~~ 93 (563)
.++++
T Consensus 66 ~D~~~ 70 (265)
T PRK07062 66 CDVLD 70 (265)
T ss_pred ecCCC
Confidence 56543
No 154
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=92.40 E-value=0.96 Score=47.46 Aligned_cols=90 Identities=19% Similarity=0.266 Sum_probs=57.3
Q ss_pred HHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEec
Q 008516 9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH 88 (563)
Q Consensus 9 kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~ 88 (563)
.+..++|.|||.|.||.++++.|...|+ ++..+|... + .. +.+. ...
T Consensus 133 ~l~g~tvgIvG~G~IG~~vA~~l~afG~-~V~~~~~~~--------~-----~~-----------------~~~~--~~~ 179 (312)
T PRK15469 133 HREDFTIGILGAGVLGSKVAQSLQTWGF-PLRCWSRSR--------K-----SW-----------------PGVQ--SFA 179 (312)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCC--------C-----CC-----------------CCce--eec
Confidence 4778999999999999999999998887 566766321 0 00 0000 000
Q ss_pred cCCCCCcchHhhcccccEEEEcc-CCHHHHHHHHHHHHh---cCCCEEEec
Q 008516 89 ANVKDPKFNVEFFKQFNVVLNGL-DNLDARRHVNRLCLA---ADVPLVESG 135 (563)
Q Consensus 89 ~~i~~~~~~~~~~~~~dvVi~al-Dn~~ar~~in~~c~~---~~~pli~~g 135 (563)
. . ..-.+++++.|+|+.++ .+.+.+..+|+--.. .+.-+|+.|
T Consensus 180 ~-~---~~l~e~l~~aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~a 226 (312)
T PRK15469 180 G-R---EELSAFLSQTRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLA 226 (312)
T ss_pred c-c---ccHHHHHhcCCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECC
Confidence 0 0 11257789999999976 456677777754332 334456655
No 155
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=92.38 E-value=0.33 Score=49.97 Aligned_cols=33 Identities=27% Similarity=0.417 Sum_probs=30.3
Q ss_pred CCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516 12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM 44 (563)
Q Consensus 12 ~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~ 44 (563)
+++++|+|+||.|..++-.|...|+++|+|++.
T Consensus 122 ~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR 154 (272)
T PRK12550 122 DLVVALRGSGGMAKAVAAALRDAGFTDGTIVAR 154 (272)
T ss_pred CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeC
Confidence 358999999999999999999999999999863
No 156
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=92.31 E-value=0.63 Score=47.84 Aligned_cols=32 Identities=25% Similarity=0.468 Sum_probs=27.2
Q ss_pred CcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516 13 AKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD 45 (563)
Q Consensus 13 ~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D 45 (563)
++|+|.| +|.+|..+++.|+..|. +++.+|..
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~-~V~~~~r~ 33 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGE-EVRVLVRP 33 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCC-EEEEEEec
Confidence 3689998 59999999999999995 68888754
No 157
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=92.14 E-value=0.77 Score=48.43 Aligned_cols=36 Identities=28% Similarity=0.318 Sum_probs=30.0
Q ss_pred HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516 9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD 45 (563)
Q Consensus 9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D 45 (563)
+++.++|+|.| +|=||+.+++.|...|. +++.+|..
T Consensus 12 ~~~~~~vlVtGatGfiG~~lv~~L~~~g~-~V~~~d~~ 48 (348)
T PRK15181 12 VLAPKRWLITGVAGFIGSGLLEELLFLNQ-TVIGLDNF 48 (348)
T ss_pred cccCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 35569999999 49999999999999985 67788754
No 158
>PRK06141 ornithine cyclodeaminase; Validated
Probab=92.13 E-value=0.57 Score=49.12 Aligned_cols=77 Identities=12% Similarity=0.104 Sum_probs=54.3
Q ss_pred HHcCCcEEEECCcHHHHHHHHHHHH-hCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEe
Q 008516 9 AIKGAKVLMVGAGGIGCELLKTLAL-SGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH 87 (563)
Q Consensus 9 kL~~~~VlvvGaGgiG~ellknLal-~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~ 87 (563)
+-..++|+|+|+|+.|...++.+.+ .|+.+|++.+. ...|++..++.+++.. ..+...
T Consensus 122 ~~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~R-------------------s~~~a~~~a~~~~~~g--~~~~~~ 180 (314)
T PRK06141 122 RKDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGR-------------------DPAKAEALAAELRAQG--FDAEVV 180 (314)
T ss_pred CCCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcC-------------------CHHHHHHHHHHHHhcC--CceEEe
Confidence 3456889999999999999997765 68888998752 2467777777776542 223321
Q ss_pred ccCCCCCcchHhhcccccEEEEccCC
Q 008516 88 HANVKDPKFNVEFFKQFNVVLNGLDN 113 (563)
Q Consensus 88 ~~~i~~~~~~~~~~~~~dvVi~alDn 113 (563)
. ...+...++|+|++++..
T Consensus 181 ~-------~~~~av~~aDIVi~aT~s 199 (314)
T PRK06141 181 T-------DLEAAVRQADIISCATLS 199 (314)
T ss_pred C-------CHHHHHhcCCEEEEeeCC
Confidence 1 124567899999999874
No 159
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=92.07 E-value=0.57 Score=48.74 Aligned_cols=33 Identities=27% Similarity=0.387 Sum_probs=28.8
Q ss_pred CCcEEEECCcHHHHHHHHHHHHhCC-CeEEEEeC
Q 008516 12 GAKVLMVGAGGIGCELLKTLALSGF-QDIHIIDM 44 (563)
Q Consensus 12 ~~~VlvvGaGgiG~ellknLal~Gv-g~I~iiD~ 44 (563)
..+|.|||+|.+|..+++.|...|. .+++++|.
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr 39 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADR 39 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 4689999999999999999999997 47888774
No 160
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=91.98 E-value=0.61 Score=48.57 Aligned_cols=72 Identities=17% Similarity=0.262 Sum_probs=50.0
Q ss_pred EEEECCcHHHHHHHHHHHHhCC-CeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC---ceEEEeccC
Q 008516 15 VLMVGAGGIGCELLKTLALSGF-QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ---MSITAHHAN 90 (563)
Q Consensus 15 VlvvGaGgiG~ellknLal~Gv-g~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~---v~I~~~~~~ 90 (563)
|.|||+|++|+.++-.|+..|+ .+|+++|.+ +.|++..+.-+.+..+. +++... .
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~-------------------~~~~~g~~~DL~~~~~~~~~~~i~~~-~- 59 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVN-------------------EEKAKGDALDLSHASAFLATGTIVRG-G- 59 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC-------------------ccHHHHHHHhHHHhccccCCCeEEEC-C-
Confidence 5799999999999999999997 569999832 34555555566655543 222211 1
Q ss_pred CCCCcchHhhcccccEEEEccCC
Q 008516 91 VKDPKFNVEFFKQFNVVLNGLDN 113 (563)
Q Consensus 91 i~~~~~~~~~~~~~dvVi~alDn 113 (563)
+.+-++++|+||.+...
T Consensus 60 ------~~~~l~~aDiVIitag~ 76 (300)
T cd00300 60 ------DYADAADADIVVITAGA 76 (300)
T ss_pred ------CHHHhCCCCEEEEcCCC
Confidence 13468899999998654
No 161
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=91.96 E-value=0.65 Score=48.61 Aligned_cols=84 Identities=25% Similarity=0.354 Sum_probs=50.4
Q ss_pred CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccCC-
Q 008516 13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV- 91 (563)
Q Consensus 13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~i- 91 (563)
+||+|+|+|++||.++-.|++.| ..++++- | ++- .+++++- +..|.....+.
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g-~~V~~~~---------------R------~~~---~~~l~~~--GL~i~~~~~~~~ 53 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAG-HDVTLLV---------------R------SRR---LEALKKK--GLRIEDEGGNFT 53 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCC-CeEEEEe---------------c------HHH---HHHHHhC--CeEEecCCCccc
Confidence 48999999999999999999999 7666642 1 111 1222222 34444433311
Q ss_pred --CCCcchHhhcccccEEEEccCCHHHHHHHHHH
Q 008516 92 --KDPKFNVEFFKQFNVVLNGLDNLDARRHVNRL 123 (563)
Q Consensus 92 --~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~ 123 (563)
.....+.+....+|+||.++-+......+..+
T Consensus 54 ~~~~~~~~~~~~~~~Dlviv~vKa~q~~~al~~l 87 (307)
T COG1893 54 TPVVAATDAEALGPADLVIVTVKAYQLEEALPSL 87 (307)
T ss_pred cccccccChhhcCCCCEEEEEeccccHHHHHHHh
Confidence 11122345566899999987655544444443
No 162
>PRK05867 short chain dehydrogenase; Provisional
Probab=91.92 E-value=0.71 Score=45.95 Aligned_cols=33 Identities=27% Similarity=0.501 Sum_probs=28.1
Q ss_pred HcCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEe
Q 008516 10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIID 43 (563)
Q Consensus 10 L~~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD 43 (563)
+++++++|.|+ ||||.++++.|+..|. ++.+++
T Consensus 7 ~~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~ 40 (253)
T PRK05867 7 LHGKRALITGASTGIGKRVALAYVEAGA-QVAIAA 40 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEc
Confidence 56788999996 8999999999999997 566654
No 163
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=91.90 E-value=1.4 Score=43.90 Aligned_cols=82 Identities=12% Similarity=0.244 Sum_probs=49.7
Q ss_pred cCCcEEEECCcHHHHHHHHHHHHhCC---CeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEe
Q 008516 11 KGAKVLMVGAGGIGCELLKTLALSGF---QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH 87 (563)
Q Consensus 11 ~~~~VlvvGaGgiG~ellknLal~Gv---g~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~ 87 (563)
+..||.|+|+|.+|..+++.|...|. ..+.+++.. ...|++.+++ ++ ++.+ .
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~------------------~~~~~~~~~~---~~--~~~~--~ 57 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRS------------------NVEKLDQLQA---RY--NVST--T 57 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCC------------------CHHHHHHHHH---Hc--CcEE--e
Confidence 45789999999999999999998873 224333210 0122222222 22 1221 1
Q ss_pred ccCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHH
Q 008516 88 HANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLC 124 (563)
Q Consensus 88 ~~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c 124 (563)
. + ..+.+++.|+|+.++-+...+..+.++.
T Consensus 58 ~-~------~~~~~~~~DiViiavp~~~~~~v~~~l~ 87 (245)
T PRK07634 58 T-D------WKQHVTSVDTIVLAMPPSAHEELLAELS 87 (245)
T ss_pred C-C------hHHHHhcCCEEEEecCHHHHHHHHHHHH
Confidence 1 1 2345688999999998766666665543
No 164
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=91.87 E-value=0.79 Score=48.33 Aligned_cols=75 Identities=15% Similarity=0.173 Sum_probs=54.1
Q ss_pred CCcEEEECCcHHHHHHHHHHH-HhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccC
Q 008516 12 GAKVLMVGAGGIGCELLKTLA-LSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN 90 (563)
Q Consensus 12 ~~~VlvvGaGgiG~ellknLa-l~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~ 90 (563)
.++++|+|+|+.|-..++.|. ..|+.+++|.+. ...|++..++.+.+.. .+++.... +
T Consensus 129 ~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R-------------------~~~~a~~~a~~~~~~~-g~~v~~~~-~ 187 (326)
T TIGR02992 129 SSVVAIFGAGMQARLQLEALTLVRDIRSARIWAR-------------------DSAKAEALALQLSSLL-GIDVTAAT-D 187 (326)
T ss_pred CcEEEEECCCHHHHHHHHHHHHhCCccEEEEECC-------------------CHHHHHHHHHHHHhhc-CceEEEeC-C
Confidence 468999999999999999997 578889998742 2357777777776433 24443321 1
Q ss_pred CCCCcchHhhcccccEEEEccCC
Q 008516 91 VKDPKFNVEFFKQFNVVLNGLDN 113 (563)
Q Consensus 91 i~~~~~~~~~~~~~dvVi~alDn 113 (563)
..+.+.++|+|++|+..
T Consensus 188 ------~~~av~~aDiVvtaT~s 204 (326)
T TIGR02992 188 ------PRAAMSGADIIVTTTPS 204 (326)
T ss_pred ------HHHHhccCCEEEEecCC
Confidence 24557899999999865
No 165
>PRK05866 short chain dehydrogenase; Provisional
Probab=91.87 E-value=0.69 Score=47.64 Aligned_cols=36 Identities=25% Similarity=0.460 Sum_probs=29.7
Q ss_pred HHHcCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeC
Q 008516 8 EAIKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDM 44 (563)
Q Consensus 8 ~kL~~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~ 44 (563)
..+.+++++|.|+ ||||.++++.|+..|. ++.++|.
T Consensus 36 ~~~~~k~vlItGasggIG~~la~~La~~G~-~Vi~~~R 72 (293)
T PRK05866 36 VDLTGKRILLTGASSGIGEAAAEQFARRGA-TVVAVAR 72 (293)
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEEC
Confidence 3456788999985 9999999999999996 6777663
No 166
>PRK09186 flagellin modification protein A; Provisional
Probab=91.85 E-value=0.66 Score=46.01 Aligned_cols=33 Identities=36% Similarity=0.555 Sum_probs=27.2
Q ss_pred HcCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEe
Q 008516 10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIID 43 (563)
Q Consensus 10 L~~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD 43 (563)
+.+++|+|.|+ |+||.++++.|+..|. ++.+++
T Consensus 2 ~~~k~vlItGas~giG~~~a~~l~~~g~-~v~~~~ 35 (256)
T PRK09186 2 LKGKTILITGAGGLIGSALVKAILEAGG-IVIAAD 35 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEe
Confidence 45788999985 8999999999999997 466654
No 167
>PRK07340 ornithine cyclodeaminase; Validated
Probab=91.83 E-value=0.58 Score=48.89 Aligned_cols=76 Identities=11% Similarity=0.134 Sum_probs=55.2
Q ss_pred HcCCcEEEECCcHHHHHHHHHHHH-hCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEec
Q 008516 10 IKGAKVLMVGAGGIGCELLKTLAL-SGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH 88 (563)
Q Consensus 10 L~~~~VlvvGaGgiG~ellknLal-~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~ 88 (563)
....+++|+|+|+.|...++.+.. .|+.++.+.|. ...|++..++.+++..+ .+. .
T Consensus 123 ~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r-------------------~~~~a~~~a~~~~~~~~--~~~--~ 179 (304)
T PRK07340 123 APPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGR-------------------TAASAAAFCAHARALGP--TAE--P 179 (304)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcC-------------------CHHHHHHHHHHHHhcCC--eeE--E
Confidence 456889999999999999999974 68888888753 24678888888765422 222 1
Q ss_pred cCCCCCcchHhhcccccEEEEccCCH
Q 008516 89 ANVKDPKFNVEFFKQFNVVLNGLDNL 114 (563)
Q Consensus 89 ~~i~~~~~~~~~~~~~dvVi~alDn~ 114 (563)
.+ ..+.+.++|+|++|+-+.
T Consensus 180 ~~------~~~av~~aDiVitaT~s~ 199 (304)
T PRK07340 180 LD------GEAIPEAVDLVVTATTSR 199 (304)
T ss_pred CC------HHHHhhcCCEEEEccCCC
Confidence 11 245678999999998753
No 168
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=91.82 E-value=0.87 Score=47.92 Aligned_cols=90 Identities=22% Similarity=0.344 Sum_probs=53.2
Q ss_pred CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccCCC
Q 008516 13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVK 92 (563)
Q Consensus 13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~i~ 92 (563)
.+|.|+|+|+.|+.+++.|+..| ..+++...|.-....++..- .-.+.-|++.. +.++.
T Consensus 2 ~kI~ViGaGswGTALA~~la~ng-~~V~lw~r~~~~~~~i~~~~-----------------~N~~yLp~i~l---p~~l~ 60 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARNG-HEVRLWGRDEEIVAEINETR-----------------ENPKYLPGILL---PPNLK 60 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhcC-CeeEEEecCHHHHHHHHhcC-----------------cCccccCCccC---Ccccc
Confidence 68999999999999999999999 45665543321111111100 00011122221 11111
Q ss_pred CCcchHhhcccccEEEEccCCHHHHHHHHHH
Q 008516 93 DPKFNVEFFKQFNVVLNGLDNLDARRHVNRL 123 (563)
Q Consensus 93 ~~~~~~~~~~~~dvVi~alDn~~ar~~in~~ 123 (563)
-...-.+..+++|+|+-++-+...|..+.++
T Consensus 61 at~Dl~~a~~~ad~iv~avPs~~~r~v~~~l 91 (329)
T COG0240 61 ATTDLAEALDGADIIVIAVPSQALREVLRQL 91 (329)
T ss_pred cccCHHHHHhcCCEEEEECChHHHHHHHHHH
Confidence 1112245677899999999988888877776
No 169
>PRK08339 short chain dehydrogenase; Provisional
Probab=91.75 E-value=0.76 Score=46.35 Aligned_cols=34 Identities=24% Similarity=0.467 Sum_probs=28.7
Q ss_pred HcCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeC
Q 008516 10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDM 44 (563)
Q Consensus 10 L~~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~ 44 (563)
|+++.++|.|+ ||||.++++.|+..|. ++.++|.
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G~-~V~~~~r 40 (263)
T PRK08339 6 LSGKLAFTTASSKGIGFGVARVLARAGA-DVILLSR 40 (263)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeC
Confidence 56778899985 7999999999999997 5777763
No 170
>PRK06194 hypothetical protein; Provisional
Probab=91.64 E-value=0.76 Score=46.62 Aligned_cols=34 Identities=24% Similarity=0.462 Sum_probs=28.9
Q ss_pred HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516 10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM 44 (563)
Q Consensus 10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~ 44 (563)
+++++++|.| +||||.++++.|+..|. +++++|.
T Consensus 4 ~~~k~vlVtGasggIG~~la~~l~~~G~-~V~~~~r 38 (287)
T PRK06194 4 FAGKVAVITGAASGFGLAFARIGAALGM-KLVLADV 38 (287)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEeC
Confidence 4567899998 58999999999999997 6888774
No 171
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=91.59 E-value=0.45 Score=49.45 Aligned_cols=117 Identities=20% Similarity=0.315 Sum_probs=65.0
Q ss_pred cEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhh-CCCceEEEeccC-C
Q 008516 14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKF-RPQMSITAHHAN-V 91 (563)
Q Consensus 14 ~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~-np~v~I~~~~~~-i 91 (563)
+|.+||+|.+|..++++|+..|. ++++.|.+.-....+. +.|-.-+....+.+... ++++-+...... .
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~g~-~v~v~dr~~~~~~~~~--------~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~ 72 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGGH-EVVGYDRNPEAVEALA--------EEGATGADSLEELVAKLPAPRVVWLMVPAGEI 72 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHH--------HCCCeecCCHHHHHhhcCCCCEEEEEecCCcH
Confidence 79999999999999999999996 5888886532111110 01211111122222222 344444444332 1
Q ss_pred CCCcch--HhhcccccEEEEc-cCCHHHHHHHHHHHHhcCCCEEEeccccc
Q 008516 92 KDPKFN--VEFFKQFNVVLNG-LDNLDARRHVNRLCLAADVPLVESGTTGF 139 (563)
Q Consensus 92 ~~~~~~--~~~~~~~dvVi~a-lDn~~ar~~in~~c~~~~~pli~~gt~G~ 139 (563)
.+.... ...++.-++||++ +-++..-..+.+.+...++.++++...|.
T Consensus 73 ~~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~~dapvsG~ 123 (301)
T PRK09599 73 TDATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHFVDVGTSGG 123 (301)
T ss_pred HHHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCEEEeCCCCcC
Confidence 011000 1123444677775 33444455566778888888888877764
No 172
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=91.55 E-value=1.5 Score=44.72 Aligned_cols=31 Identities=19% Similarity=0.456 Sum_probs=25.0
Q ss_pred cEEEECC-cHHHHHHHHHHHHhCC-CeEEEEeC
Q 008516 14 KVLMVGA-GGIGCELLKTLALSGF-QDIHIIDM 44 (563)
Q Consensus 14 ~VlvvGa-GgiG~ellknLal~Gv-g~I~iiD~ 44 (563)
+|+|.|+ |.+|..+++.|...|- .+++++|.
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~ 33 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDK 33 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecC
Confidence 5899985 9999999999998873 36776653
No 173
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=91.55 E-value=0.66 Score=47.87 Aligned_cols=105 Identities=21% Similarity=0.266 Sum_probs=59.1
Q ss_pred CcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccCC
Q 008516 13 AKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV 91 (563)
Q Consensus 13 ~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~i 91 (563)
+||||.|+ |-||+.+++.|...| +++.+|...- +...|+-. .+.+.+.+....|++-|+. .-.
T Consensus 1 m~iLVtG~~GfiGs~l~~~L~~~g--~V~~~~~~~~----------~~~~Dl~d--~~~~~~~~~~~~~D~Vih~--Aa~ 64 (299)
T PRK09987 1 MNILLFGKTGQVGWELQRALAPLG--NLIALDVHST----------DYCGDFSN--PEGVAETVRKIRPDVIVNA--AAH 64 (299)
T ss_pred CeEEEECCCCHHHHHHHHHhhccC--CEEEeccccc----------cccCCCCC--HHHHHHHHHhcCCCEEEEC--Ccc
Confidence 37999995 999999999999888 5777774310 11234433 2334455555556544332 111
Q ss_pred CCCc---chHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEecccccee
Q 008516 92 KDPK---FNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLG 141 (563)
Q Consensus 92 ~~~~---~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~G~~G 141 (563)
.... .+.+.. -..|..+-..+-+.|...++++|..++...+|
T Consensus 65 ~~~~~~~~~~~~~--------~~~N~~~~~~l~~aa~~~g~~~v~~Ss~~Vy~ 109 (299)
T PRK09987 65 TAVDKAESEPEFA--------QLLNATSVEAIAKAANEVGAWVVHYSTDYVFP 109 (299)
T ss_pred CCcchhhcCHHHH--------HHHHHHHHHHHHHHHHHcCCeEEEEccceEEC
Confidence 1000 000000 01234444566778888899999887765443
No 174
>PRK07576 short chain dehydrogenase; Provisional
Probab=91.46 E-value=0.59 Score=47.06 Aligned_cols=37 Identities=22% Similarity=0.426 Sum_probs=30.8
Q ss_pred HHHcCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516 8 EAIKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMD 45 (563)
Q Consensus 8 ~kL~~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~D 45 (563)
.++.+++++|.|+ ||||.++++.|+..|. ++.++|.+
T Consensus 5 ~~~~~k~ilItGasggIG~~la~~l~~~G~-~V~~~~r~ 42 (264)
T PRK07576 5 FDFAGKNVVVVGGTSGINLGIAQAFARAGA-NVAVASRS 42 (264)
T ss_pred ccCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 3577889999986 8999999999999986 47777754
No 175
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=91.44 E-value=1.4 Score=45.31 Aligned_cols=31 Identities=29% Similarity=0.275 Sum_probs=27.6
Q ss_pred cEEEECCcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516 14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMD 45 (563)
Q Consensus 14 ~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D 45 (563)
+|.|||+|.+|..+++.|...|. +++++|.+
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~-~V~~~d~~ 32 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGH-TVYGVSRR 32 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCC-EEEEEECC
Confidence 79999999999999999999986 68888753
No 176
>PRK08655 prephenate dehydrogenase; Provisional
Probab=91.41 E-value=0.71 Score=50.75 Aligned_cols=90 Identities=17% Similarity=0.270 Sum_probs=55.6
Q ss_pred CcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccCC
Q 008516 13 AKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV 91 (563)
Q Consensus 13 ~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~i 91 (563)
++|.|+| +|++|..+++.|...|. +++++|.+. .++...+ .+. ++.+ ..
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~-~V~v~~r~~-------------------~~~~~~a---~~~--gv~~---~~-- 50 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGF-EVIVTGRDP-------------------KKGKEVA---KEL--GVEY---AN-- 50 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCC-EEEEEECCh-------------------HHHHHHH---HHc--CCee---cc--
Confidence 3799997 89999999999999996 678777431 1111111 111 1111 00
Q ss_pred CCCcchHhhcccccEEEEccCCHHHHHHHHHHHH--hcCCCEEEecc
Q 008516 92 KDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCL--AADVPLVESGT 136 (563)
Q Consensus 92 ~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~--~~~~pli~~gt 136 (563)
...+...++|+||.|+-.......+.++.. ..+..+++.++
T Consensus 51 ----~~~e~~~~aDvVIlavp~~~~~~vl~~l~~~l~~~~iViDvsS 93 (437)
T PRK08655 51 ----DNIDAAKDADIVIISVPINVTEDVIKEVAPHVKEGSLLMDVTS 93 (437)
T ss_pred ----CHHHHhccCCEEEEecCHHHHHHHHHHHHhhCCCCCEEEEccc
Confidence 123456789999999876555555555543 23556777775
No 177
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=91.39 E-value=0.73 Score=45.35 Aligned_cols=34 Identities=26% Similarity=0.571 Sum_probs=29.4
Q ss_pred HcCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeC
Q 008516 10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDM 44 (563)
Q Consensus 10 L~~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~ 44 (563)
+++.+++|.|+ |+||..+++.|+..|. ++.++|.
T Consensus 3 ~~~~~~lItG~~g~iG~~~a~~l~~~G~-~vi~~~r 37 (253)
T PRK08217 3 LKDKVIVITGGAQGLGRAMAEYLAQKGA-KLALIDL 37 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence 56789999997 9999999999999997 5777763
No 178
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=91.33 E-value=0.25 Score=53.93 Aligned_cols=36 Identities=36% Similarity=0.564 Sum_probs=32.9
Q ss_pred HHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516 9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM 44 (563)
Q Consensus 9 kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~ 44 (563)
.+.+.+|+|+|+|.+|..+++.|...|+.+++++|.
T Consensus 177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~r 212 (417)
T TIGR01035 177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANR 212 (417)
T ss_pred CccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeC
Confidence 367899999999999999999999999999999864
No 179
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=91.30 E-value=0.35 Score=56.37 Aligned_cols=160 Identities=16% Similarity=0.225 Sum_probs=90.4
Q ss_pred CcEEEECCcHHHHHHHHHHH-HhCCCeEEEEeCCccCcccCcccc--C---C-CCCCCCchHHHHHHHHHHhhCCCceEE
Q 008516 13 AKVLMVGAGGIGCELLKTLA-LSGFQDIHIIDMDTIEVSNLNRQF--L---F-RQSHVGQSKAKVARDAVLKFRPQMSIT 85 (563)
Q Consensus 13 ~~VlvvGaGgiG~ellknLa-l~Gvg~I~iiD~D~Ve~sNLnRqf--L---f-~~~diGk~Ka~va~~~l~~~np~v~I~ 85 (563)
++|.|||+|.+|+.++-.++ ..|+ .++++|.+. ..+.|-. + + ..-.-|+-..+.+.+.+. +|+
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~-~V~l~d~~~---~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~------~i~ 379 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGL-PVRIKDINP---QGINHALKYSWDLLDKKVKRRHLKPSERDKQMA------LIS 379 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCC-eEEEEeCCH---HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHh------cEE
Confidence 57999999999999999999 8897 689998653 2221110 0 0 000011111111111111 121
Q ss_pred EeccCCCCCcchHhhcccccEEEEcc-CCHHHHHHHHHHHHhcCC--CEEEeccccce-eeEEEEeCCCCccccccCCCC
Q 008516 86 AHHANVKDPKFNVEFFKQFNVVLNGL-DNLDARRHVNRLCLAADV--PLVESGTTGFL-GQVTVHVKGKTECYECQPKPA 161 (563)
Q Consensus 86 ~~~~~i~~~~~~~~~~~~~dvVi~al-Dn~~ar~~in~~c~~~~~--pli~~gt~G~~-G~v~v~~~~~t~Cy~C~~~~~ 161 (563)
... +.+-++++|+||.|. .+.+..+.+-+..-..-. .++.+.|.+.. ..+.-......-+...+.-.+
T Consensus 380 ~~~--------~~~~~~~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~~la~~~~~p~r~ig~Hff~P 451 (708)
T PRK11154 380 GTT--------DYRGFKHADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSSLPIGQIAAAAARPEQVIGLHYFSP 451 (708)
T ss_pred EeC--------ChHHhccCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhcCcccceEEEecCCc
Confidence 111 113368999999985 667777666555444322 46666666532 111111122223444445556
Q ss_pred CCCCCceeeccCCCCchhHHHHHHHHHHHH
Q 008516 162 PKTYPVCTITSTPSKFVHCIVWAKDLLFAK 191 (563)
Q Consensus 162 ~~~~p~cti~~~p~~~~hci~~a~~~lf~~ 191 (563)
+..-|...|...|.+....+..+.+ +...
T Consensus 452 ~~~~~lVEvv~g~~Ts~~~~~~~~~-~~~~ 480 (708)
T PRK11154 452 VEKMPLVEVIPHAKTSAETIATTVA-LAKK 480 (708)
T ss_pred cccCceEEEECCCCCCHHHHHHHHH-HHHH
Confidence 6667889998888888888998887 3443
No 180
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=91.20 E-value=0.83 Score=49.68 Aligned_cols=36 Identities=22% Similarity=0.322 Sum_probs=31.9
Q ss_pred HcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCc
Q 008516 10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT 46 (563)
Q Consensus 10 L~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~ 46 (563)
+.+++|+|+|+|.+|.-+++.+...|. +++++|.|.
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~Ga-~ViV~d~dp 228 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGMGA-RVIVTEVDP 228 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhCcC-EEEEEeCCh
Confidence 578899999999999999999999998 588888554
No 181
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=91.15 E-value=0.42 Score=49.65 Aligned_cols=32 Identities=28% Similarity=0.506 Sum_probs=27.5
Q ss_pred cEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCc
Q 008516 14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT 46 (563)
Q Consensus 14 ~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~ 46 (563)
+|.|||+|.+|..++.+|+..|. ++.+.|.+.
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~-~V~~~dr~~ 33 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGH-DCVGYDHDQ 33 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCC-EEEEEECCH
Confidence 79999999999999999999996 577777543
No 182
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=91.09 E-value=1.4 Score=38.39 Aligned_cols=84 Identities=20% Similarity=0.277 Sum_probs=54.9
Q ss_pred EEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccCCCCC
Q 008516 15 VLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKDP 94 (563)
Q Consensus 15 VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~i~~~ 94 (563)
|+|+|.|.+|-++++.|...| -.++++|.|.-. .+.+++.. +..+.++.++.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~-~~vvvid~d~~~-----------------------~~~~~~~~----~~~i~gd~~~~ 52 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGG-IDVVVIDRDPER-----------------------VEELREEG----VEVIYGDATDP 52 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTT-SEEEEEESSHHH-----------------------HHHHHHTT----SEEEES-TTSH
T ss_pred eEEEcCCHHHHHHHHHHHhCC-CEEEEEECCcHH-----------------------HHHHHhcc----cccccccchhh
Confidence 689999999999999999954 579999866421 11222221 23444555332
Q ss_pred -cchHhhcccccEEEEccCCHHHHHHHHHHHHh
Q 008516 95 -KFNVEFFKQFNVVLNGLDNLDARRHVNRLCLA 126 (563)
Q Consensus 95 -~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~ 126 (563)
.+...-+++++.|+.++++...-..+-..++.
T Consensus 53 ~~l~~a~i~~a~~vv~~~~~d~~n~~~~~~~r~ 85 (116)
T PF02254_consen 53 EVLERAGIEKADAVVILTDDDEENLLIALLARE 85 (116)
T ss_dssp HHHHHTTGGCESEEEEESSSHHHHHHHHHHHHH
T ss_pred hHHhhcCccccCEEEEccCCHHHHHHHHHHHHH
Confidence 12233467889999999888777777777776
No 183
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=91.07 E-value=0.43 Score=55.73 Aligned_cols=163 Identities=13% Similarity=0.125 Sum_probs=89.2
Q ss_pred CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCccc----CccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEec
Q 008516 13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSN----LNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH 88 (563)
Q Consensus 13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sN----LnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~ 88 (563)
.+|.|||+|.+|+.++-.++..|. .++++|.+.=.... +.+. |=+.-.-|+-..+.+.+.+.++ +...
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~~~~~~~-l~~~~~~g~~~~~~~~~~~~~i------~~~~ 385 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGV-PVIMKDINQKALDLGMTEAAKL-LNKQVERGKIDGAKMAGVLSSI------RPTL 385 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHH-HHHHHHcCCCChhhHHHHHhCe------EEeC
Confidence 479999999999999999999997 79999955322111 0000 0000011222222222222222 1111
Q ss_pred cCCCCCcchHhhcccccEEEEcc-CCHHHHHHHHHHHHhcCC--CEEEeccccce-eeEEEEeCCCCccccccCCCCCCC
Q 008516 89 ANVKDPKFNVEFFKQFNVVLNGL-DNLDARRHVNRLCLAADV--PLVESGTTGFL-GQVTVHVKGKTECYECQPKPAPKT 164 (563)
Q Consensus 89 ~~i~~~~~~~~~~~~~dvVi~al-Dn~~ar~~in~~c~~~~~--pli~~gt~G~~-G~v~v~~~~~t~Cy~C~~~~~~~~ 164 (563)
. .+-++++|+||.|. .+.+..+.+-+..-..-. .++.+.|.+.. ..+.-......-+..-+.-.++..
T Consensus 386 ------~--~~~~~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~~g~Hff~P~~~ 457 (715)
T PRK11730 386 ------D--YAGFERVDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTSTISISLLAKALKRPENFCGMHFFNPVHR 457 (715)
T ss_pred ------C--HHHhcCCCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCCccEEEEecCCcccc
Confidence 1 13368999999985 667776665544433222 46666665532 111111122222334344445555
Q ss_pred CCceeeccCCCCchhHHHHHHHHHHHHH
Q 008516 165 YPVCTITSTPSKFVHCIVWAKDLLFAKL 192 (563)
Q Consensus 165 ~p~cti~~~p~~~~hci~~a~~~lf~~l 192 (563)
-|...|...+.+...++..+.+ +...+
T Consensus 458 ~~lVEvv~g~~T~~~~~~~~~~-~~~~l 484 (715)
T PRK11730 458 MPLVEVIRGEKTSDETIATVVA-YASKM 484 (715)
T ss_pred cceEEeeCCCCCCHHHHHHHHH-HHHHh
Confidence 6777787778888888998888 44443
No 184
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=91.04 E-value=3.1 Score=41.09 Aligned_cols=83 Identities=27% Similarity=0.232 Sum_probs=50.3
Q ss_pred CcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCC--Cc--eEEEe
Q 008516 13 AKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRP--QM--SITAH 87 (563)
Q Consensus 13 ~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np--~v--~I~~~ 87 (563)
++|.|+| +|.+|+.+++.|+..| .++++.|.+ ..|++.+++....... .. ++...
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G-~~V~v~~r~-------------------~~~~~~l~~~~~~~~~~~g~~~~~~~~ 60 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAG-NKIIIGSRD-------------------LEKAEEAAAKALEELGHGGSDIKVTGA 60 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCC-CEEEEEEcC-------------------HHHHHHHHHHHHhhccccCCCceEEEe
Confidence 3799997 8999999999999999 467776532 2233333322211111 11 11111
Q ss_pred ccCCCCCcchHhhcccccEEEEccCCHHHHHHHHHH
Q 008516 88 HANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRL 123 (563)
Q Consensus 88 ~~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~ 123 (563)
...+..+++|+||.|+-....+..+.++
T Consensus 61 --------~~~ea~~~aDvVilavp~~~~~~~l~~l 88 (219)
T TIGR01915 61 --------DNAEAAKRADVVILAVPWDHVLKTLESL 88 (219)
T ss_pred --------ChHHHHhcCCEEEEECCHHHHHHHHHHH
Confidence 1234577899999998876666665554
No 185
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=91.02 E-value=1.2 Score=45.78 Aligned_cols=64 Identities=28% Similarity=0.529 Sum_probs=49.8
Q ss_pred HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEec
Q 008516 10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH 88 (563)
Q Consensus 10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~ 88 (563)
++.++++|-| .+|||-|+++.|++-|. ++.++- | -+.|-+.+++.+++.+ .++++.+.
T Consensus 4 ~~~~~~lITGASsGIG~~~A~~lA~~g~-~liLva---------------R----~~~kL~~la~~l~~~~-~v~v~vi~ 62 (265)
T COG0300 4 MKGKTALITGASSGIGAELAKQLARRGY-NLILVA---------------R----REDKLEALAKELEDKT-GVEVEVIP 62 (265)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEe---------------C----cHHHHHHHHHHHHHhh-CceEEEEE
Confidence 4677899999 58999999999999997 466652 1 2356778888888877 78888888
Q ss_pred cCCCCC
Q 008516 89 ANVKDP 94 (563)
Q Consensus 89 ~~i~~~ 94 (563)
.++++.
T Consensus 63 ~DLs~~ 68 (265)
T COG0300 63 ADLSDP 68 (265)
T ss_pred CcCCCh
Confidence 887543
No 186
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=90.98 E-value=1.4 Score=48.01 Aligned_cols=94 Identities=20% Similarity=0.275 Sum_probs=59.1
Q ss_pred cCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccC
Q 008516 11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN 90 (563)
Q Consensus 11 ~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~ 90 (563)
...+++|+|+|.+|..+++.|...|. .++++|.|.= +.+ .+++..+++. .+.++
T Consensus 230 ~~~~iiIiG~G~~g~~l~~~L~~~~~-~v~vid~~~~-------------------~~~----~~~~~~~~~~--~i~gd 283 (453)
T PRK09496 230 PVKRVMIVGGGNIGYYLAKLLEKEGY-SVKLIERDPE-------------------RAE----ELAEELPNTL--VLHGD 283 (453)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHH-------------------HHH----HHHHHCCCCe--EEECC
Confidence 36889999999999999999999887 5888874431 111 1222222332 23334
Q ss_pred CCCC-cchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCC
Q 008516 91 VKDP-KFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVP 130 (563)
Q Consensus 91 i~~~-~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~p 130 (563)
.++. .+...-++++|.|+.++++...-..+...++..+.+
T Consensus 284 ~~~~~~L~~~~~~~a~~vi~~~~~~~~n~~~~~~~~~~~~~ 324 (453)
T PRK09496 284 GTDQELLEEEGIDEADAFIALTNDDEANILSSLLAKRLGAK 324 (453)
T ss_pred CCCHHHHHhcCCccCCEEEECCCCcHHHHHHHHHHHHhCCC
Confidence 3321 122234678999999988766665665666665543
No 187
>PRK08291 ectoine utilization protein EutC; Validated
Probab=90.92 E-value=1.2 Score=47.10 Aligned_cols=75 Identities=13% Similarity=0.189 Sum_probs=53.0
Q ss_pred CCcEEEECCcHHHHHHHHHHHH-hCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccC
Q 008516 12 GAKVLMVGAGGIGCELLKTLAL-SGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN 90 (563)
Q Consensus 12 ~~~VlvvGaGgiG~ellknLal-~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~ 90 (563)
.++++|+|+|+.|...+..|.. .|+.+++|++. ...|++..++.+++.. .+++.....
T Consensus 132 ~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R-------------------~~~~a~~l~~~~~~~~-g~~v~~~~d- 190 (330)
T PRK08291 132 ASRAAVIGAGEQARLQLEALTLVRPIREVRVWAR-------------------DAAKAEAYAADLRAEL-GIPVTVARD- 190 (330)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcC-------------------CHHHHHHHHHHHhhcc-CceEEEeCC-
Confidence 4689999999999999999985 57889999742 2347777777765432 234433211
Q ss_pred CCCCcchHhhcccccEEEEccCC
Q 008516 91 VKDPKFNVEFFKQFNVVLNGLDN 113 (563)
Q Consensus 91 i~~~~~~~~~~~~~dvVi~alDn 113 (563)
..+.+.++|+|++|+..
T Consensus 191 ------~~~al~~aDiVi~aT~s 207 (330)
T PRK08291 191 ------VHEAVAGADIIVTTTPS 207 (330)
T ss_pred ------HHHHHccCCEEEEeeCC
Confidence 13557889999999865
No 188
>PLN02206 UDP-glucuronate decarboxylase
Probab=90.88 E-value=1.5 Score=48.29 Aligned_cols=104 Identities=18% Similarity=0.247 Sum_probs=60.8
Q ss_pred cCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEecc
Q 008516 11 KGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA 89 (563)
Q Consensus 11 ~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~ 89 (563)
+++||+|.| .|-||+.+++.|...|. ++..+|..... . +... .... .++ +++.+..
T Consensus 118 ~~~kILVTGatGfIGs~Lv~~Ll~~G~-~V~~ld~~~~~----------------~-~~~~-~~~~--~~~--~~~~i~~ 174 (442)
T PLN02206 118 KGLRVVVTGGAGFVGSHLVDRLMARGD-SVIVVDNFFTG----------------R-KENV-MHHF--SNP--NFELIRH 174 (442)
T ss_pred CCCEEEEECcccHHHHHHHHHHHHCcC-EEEEEeCCCcc----------------c-hhhh-hhhc--cCC--ceEEEEC
Confidence 568999999 59999999999999996 56666642210 0 0000 0000 122 2333444
Q ss_pred CCCCCcchHhhcccccEEEEccC---------CHH--------HHHHHHHHHHhcCCCEEEeccccceee
Q 008516 90 NVKDPKFNVEFFKQFNVVLNGLD---------NLD--------ARRHVNRLCLAADVPLVESGTTGFLGQ 142 (563)
Q Consensus 90 ~i~~~~~~~~~~~~~dvVi~alD---------n~~--------ar~~in~~c~~~~~pli~~gt~G~~G~ 142 (563)
++.+ ..+.++|+||.+.. ++. .-..+-+.|+..++++|..++...+|.
T Consensus 175 D~~~-----~~l~~~D~ViHlAa~~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~g~r~V~~SS~~VYg~ 239 (442)
T PLN02206 175 DVVE-----PILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGD 239 (442)
T ss_pred CccC-----hhhcCCCEEEEeeeecchhhhhcCHHHHHHHHHHHHHHHHHHHHHhCCEEEEECChHHhCC
Confidence 4422 23457898888431 111 113445677788888998888765553
No 189
>PTZ00325 malate dehydrogenase; Provisional
Probab=90.86 E-value=0.6 Score=49.23 Aligned_cols=35 Identities=34% Similarity=0.493 Sum_probs=30.2
Q ss_pred HcCCcEEEECC-cHHHHHHHHHHHHhCCC-eEEEEeC
Q 008516 10 IKGAKVLMVGA-GGIGCELLKTLALSGFQ-DIHIIDM 44 (563)
Q Consensus 10 L~~~~VlvvGa-GgiG~ellknLal~Gvg-~I~iiD~ 44 (563)
++-.||.|+|+ |.+|+.++-.|+..|.. +|.++|-
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di 42 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDI 42 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEec
Confidence 44569999998 99999999999988874 7999985
No 190
>PRK06223 malate dehydrogenase; Reviewed
Probab=90.85 E-value=1 Score=46.75 Aligned_cols=32 Identities=34% Similarity=0.678 Sum_probs=29.5
Q ss_pred CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516 13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDM 44 (563)
Q Consensus 13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~ 44 (563)
.||.|+|+|.+|..++..++..|.+++.++|.
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~ 34 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDI 34 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEEC
Confidence 58999999999999999999998769999985
No 191
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=90.84 E-value=0.62 Score=49.99 Aligned_cols=96 Identities=13% Similarity=0.194 Sum_probs=56.0
Q ss_pred cCCcEEEECCcHHHHHHHHHHHHhCC-----C-eEEEEeCCccCcccCccccCCCCCCC-CchHHHHHHHHHH--hhCCC
Q 008516 11 KGAKVLMVGAGGIGCELLKTLALSGF-----Q-DIHIIDMDTIEVSNLNRQFLFRQSHV-GQSKAKVARDAVL--KFRPQ 81 (563)
Q Consensus 11 ~~~~VlvvGaGgiG~ellknLal~Gv-----g-~I~iiD~D~Ve~sNLnRqfLf~~~di-Gk~Ka~va~~~l~--~~np~ 81 (563)
...+|.|+|+|+.|+.++..|+..|. + ++++...|. ++ |+.-++.+.+.=. +.-|+
T Consensus 10 ~~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~---------------~~~~~~~~~~in~~~~N~~ylp~ 74 (365)
T PTZ00345 10 GPLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEE---------------IVEGEKLSDIINTKHENVKYLPG 74 (365)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecc---------------cccchHHHHHHHhcCCCcccCCC
Confidence 45689999999999999999999873 3 566653322 21 2222222211100 11133
Q ss_pred ceEEEeccCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHH
Q 008516 82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLC 124 (563)
Q Consensus 82 v~I~~~~~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c 124 (563)
+++ +.++.-.....+..++.|+|+.|+-....|..+.++.
T Consensus 75 ~~L---p~ni~~tsdl~eav~~aDiIvlAVPsq~l~~vl~~l~ 114 (365)
T PTZ00345 75 IKL---PDNIVAVSDLKEAVEDADLLIFVIPHQFLESVLSQIK 114 (365)
T ss_pred CcC---CCceEEecCHHHHHhcCCEEEEEcChHHHHHHHHHhc
Confidence 322 2222111112356789999999999888787777764
No 192
>PTZ00117 malate dehydrogenase; Provisional
Probab=90.83 E-value=0.32 Score=51.18 Aligned_cols=36 Identities=28% Similarity=0.471 Sum_probs=32.3
Q ss_pred HcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516 10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD 45 (563)
Q Consensus 10 L~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D 45 (563)
.++.||.|||+|.+|..++-.|++.|+..+.|+|-+
T Consensus 3 ~~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~ 38 (319)
T PTZ00117 3 VKRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVI 38 (319)
T ss_pred CCCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECC
Confidence 357899999999999999999999998889999953
No 193
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=90.83 E-value=0.35 Score=46.30 Aligned_cols=36 Identities=25% Similarity=0.414 Sum_probs=30.8
Q ss_pred HHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516 9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD 45 (563)
Q Consensus 9 kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D 45 (563)
.|.+++|.|+|.|.||.++++-|...|. ++..+|..
T Consensus 33 ~l~g~tvgIiG~G~IG~~vA~~l~~fG~-~V~~~d~~ 68 (178)
T PF02826_consen 33 ELRGKTVGIIGYGRIGRAVARRLKAFGM-RVIGYDRS 68 (178)
T ss_dssp -STTSEEEEESTSHHHHHHHHHHHHTT--EEEEEESS
T ss_pred ccCCCEEEEEEEcCCcCeEeeeeecCCc-eeEEeccc
Confidence 5789999999999999999999999998 78887743
No 194
>CHL00194 ycf39 Ycf39; Provisional
Probab=90.79 E-value=1.3 Score=46.04 Aligned_cols=98 Identities=14% Similarity=0.219 Sum_probs=58.7
Q ss_pred CcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccCC
Q 008516 13 AKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV 91 (563)
Q Consensus 13 ~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~i 91 (563)
++|+|.|+ |-+|..+++.|...|. +++.++.+. .++. .+.. + .++....++
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~-~V~~l~R~~-------------------~~~~----~l~~--~--~v~~v~~Dl 52 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGY-QVRCLVRNL-------------------RKAS----FLKE--W--GAELVYGDL 52 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC-eEEEEEcCh-------------------HHhh----hHhh--c--CCEEEECCC
Confidence 37999995 9999999999999996 576665321 1111 1111 1 344555666
Q ss_pred CCCcchHhhcccccEEEEccCC------------HHHHHHHHHHHHhcCC-CEEEecccc
Q 008516 92 KDPKFNVEFFKQFNVVLNGLDN------------LDARRHVNRLCLAADV-PLVESGTTG 138 (563)
Q Consensus 92 ~~~~~~~~~~~~~dvVi~alDn------------~~ar~~in~~c~~~~~-pli~~gt~G 138 (563)
++...-.+.++++|+|+++... ...-..+-+.|...++ .+|..++.|
T Consensus 53 ~d~~~l~~al~g~d~Vi~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~gvkr~I~~Ss~~ 112 (317)
T CHL00194 53 SLPETLPPSFKGVTAIIDASTSRPSDLYNAKQIDWDGKLALIEAAKAAKIKRFIFFSILN 112 (317)
T ss_pred CCHHHHHHHHCCCCEEEECCCCCCCCccchhhhhHHHHHHHHHHHHHcCCCEEEEecccc
Confidence 5443334567888998886421 1222345566777775 566665543
No 195
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=90.76 E-value=0.45 Score=53.60 Aligned_cols=34 Identities=26% Similarity=0.417 Sum_probs=30.6
Q ss_pred HcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516 10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM 44 (563)
Q Consensus 10 L~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~ 44 (563)
+++++++|+|+||+|..+++.|+..|+ +|++++.
T Consensus 377 ~~~k~vlIlGaGGagrAia~~L~~~G~-~V~i~nR 410 (529)
T PLN02520 377 LAGKLFVVIGAGGAGKALAYGAKEKGA-RVVIANR 410 (529)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEcC
Confidence 567889999999999999999999999 8988763
No 196
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=90.76 E-value=0.98 Score=44.26 Aligned_cols=32 Identities=34% Similarity=0.595 Sum_probs=26.7
Q ss_pred HcCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEE
Q 008516 10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHII 42 (563)
Q Consensus 10 L~~~~VlvvGa-GgiG~ellknLal~Gvg~I~ii 42 (563)
|++++++|.|+ |++|.++++.|+..|.. +.++
T Consensus 3 ~~~~~ilI~Gasg~iG~~la~~l~~~g~~-v~~~ 35 (247)
T PRK05565 3 LMGKVAIVTGASGGIGRAIAELLAKEGAK-VVIA 35 (247)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEE
Confidence 66789999985 99999999999999975 4444
No 197
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=90.75 E-value=1.4 Score=48.40 Aligned_cols=108 Identities=19% Similarity=0.254 Sum_probs=75.3
Q ss_pred CcEEEECCcHH-HHHHHHHHHHh----CCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEe
Q 008516 13 AKVLMVGAGGI-GCELLKTLALS----GFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH 87 (563)
Q Consensus 13 ~~VlvvGaGgi-G~ellknLal~----Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~ 87 (563)
.||.|||+|+. +-++++.|+.. .+++|.++|-|. ..|.+ =...+++.+++..+.++|+..
T Consensus 1 ~KI~iIGgGS~~tp~li~~l~~~~~~l~~~ei~L~Did~---~Rl~~------------v~~l~~~~~~~~g~~~~v~~t 65 (425)
T cd05197 1 VKIAIIGGGSSFTPELVSGLLKTPEELPISEVTLYDIDE---ERLDI------------ILTIAKRYVEEVGADIKFEKT 65 (425)
T ss_pred CEEEEECCchHhHHHHHHHHHcChhhCCCCEEEEEcCCH---HHHHH------------HHHHHHHHHHhhCCCeEEEEe
Confidence 37999999996 45778888744 458999999553 22211 123455666677788888876
Q ss_pred ccCCCCCcchHhhcccccEEEEc--cCCHHHHHHHHHHHHhcCCCEEEeccccceeeEE
Q 008516 88 HANVKDPKFNVEFFKQFNVVLNG--LDNLDARRHVNRLCLAADVPLVESGTTGFLGQVT 144 (563)
Q Consensus 88 ~~~i~~~~~~~~~~~~~dvVi~a--lDn~~ar~~in~~c~~~~~pli~~gt~G~~G~v~ 144 (563)
.+. .+-++++|+||++ ....++|..--+...++|+- -..|.|..|-..
T Consensus 66 tD~-------~~Al~gADfVi~~irvGg~~~r~~De~Iplk~G~~--gqeT~G~GG~~~ 115 (425)
T cd05197 66 MDL-------EDAIIDADFVINQFRVGGLTYREKDEQIPLKYGVI--GQETVGPGGTFS 115 (425)
T ss_pred CCH-------HHHhCCCCEEEEeeecCChHHHHHHHhHHHHcCcc--cccccCcchhhh
Confidence 543 4668999999996 46678888777888898863 366777766443
No 198
>PLN02253 xanthoxin dehydrogenase
Probab=90.73 E-value=0.83 Score=46.21 Aligned_cols=35 Identities=29% Similarity=0.560 Sum_probs=29.4
Q ss_pred HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516 9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM 44 (563)
Q Consensus 9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~ 44 (563)
++.+++++|.| .||||.++++.|+..|. ++.++|.
T Consensus 15 ~l~~k~~lItGas~gIG~~la~~l~~~G~-~v~~~~~ 50 (280)
T PLN02253 15 RLLGKVALVTGGATGIGESIVRLFHKHGA-KVCIVDL 50 (280)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeC
Confidence 46778899998 68999999999999996 5777763
No 199
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=90.71 E-value=1.4 Score=46.78 Aligned_cols=91 Identities=18% Similarity=0.199 Sum_probs=55.6
Q ss_pred cEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEecc-CCC
Q 008516 14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA-NVK 92 (563)
Q Consensus 14 ~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~-~i~ 92 (563)
+|+|+|+|.||.-.+..+...|.+.|.++|.+. .|-+.|++... .-.+..... ...
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~-------------------~Rl~~A~~~~g----~~~~~~~~~~~~~ 227 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSP-------------------ERLELAKEAGG----ADVVVNPSEDDAG 227 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCH-------------------HHHHHHHHhCC----CeEeecCccccHH
Confidence 799999999999999999999999999987432 23333333211 000100000 000
Q ss_pred CCcchHhhc--ccccEEEEccCCHHHHHHHHHHHHhcCC
Q 008516 93 DPKFNVEFF--KQFNVVLNGLDNLDARRHVNRLCLAADV 129 (563)
Q Consensus 93 ~~~~~~~~~--~~~dvVi~alDn~~ar~~in~~c~~~~~ 129 (563)
....+.- ..+|+|+.|+.+..+.....++++..+.
T Consensus 228 --~~~~~~t~g~g~D~vie~~G~~~~~~~ai~~~r~gG~ 264 (350)
T COG1063 228 --AEILELTGGRGADVVIEAVGSPPALDQALEALRPGGT 264 (350)
T ss_pred --HHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhcCCCE
Confidence 0001111 4699999999988766666666655544
No 200
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=90.67 E-value=0.84 Score=47.40 Aligned_cols=33 Identities=33% Similarity=0.523 Sum_probs=28.7
Q ss_pred CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCc
Q 008516 13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT 46 (563)
Q Consensus 13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~ 46 (563)
.+|.|+|+|.+|+.++..|+..|. +++++|.+.
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~-~V~~~~r~~ 34 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGH-DVTLWARDP 34 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC-EEEEEECCH
Confidence 379999999999999999999997 588887543
No 201
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=90.60 E-value=0.9 Score=49.06 Aligned_cols=99 Identities=19% Similarity=0.268 Sum_probs=61.8
Q ss_pred cCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEecc
Q 008516 11 KGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA 89 (563)
Q Consensus 11 ~~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~ 89 (563)
+..||.|+|+ |.+|.|+++.|......+|+.+-. ....|+.- ...+|.+.-... .
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s---------------~~saG~~i--------~~~~~~l~~~~~-~ 92 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTA---------------DRKAGQSF--------GSVFPHLITQDL-P 92 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEC---------------hhhcCCCc--------hhhCccccCccc-c
Confidence 4569999996 899999999999886667777532 22233321 111222111000 0
Q ss_pred CCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEeccc
Q 008516 90 NVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTT 137 (563)
Q Consensus 90 ~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~ 137 (563)
++. ..+.+-+++.|+|+.|+.+..++.++..+ ..+.++|+.++.
T Consensus 93 ~~~--~~~~~~~~~~DvVf~Alp~~~s~~i~~~~--~~g~~VIDlSs~ 136 (381)
T PLN02968 93 NLV--AVKDADFSDVDAVFCCLPHGTTQEIIKAL--PKDLKIVDLSAD 136 (381)
T ss_pred cee--cCCHHHhcCCCEEEEcCCHHHHHHHHHHH--hCCCEEEEcCch
Confidence 011 11222248899999999998888888875 467888887654
No 202
>PRK06940 short chain dehydrogenase; Provisional
Probab=90.59 E-value=1 Score=45.74 Aligned_cols=31 Identities=29% Similarity=0.608 Sum_probs=25.8
Q ss_pred CCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516 12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM 44 (563)
Q Consensus 12 ~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~ 44 (563)
++.++|.|+||||.++++.|+ .|. ++.++|.
T Consensus 2 ~k~~lItGa~gIG~~la~~l~-~G~-~Vv~~~r 32 (275)
T PRK06940 2 KEVVVVIGAGGIGQAIARRVG-AGK-KVLLADY 32 (275)
T ss_pred CCEEEEECCChHHHHHHHHHh-CCC-EEEEEeC
Confidence 567889999999999999996 774 6777764
No 203
>PRK07478 short chain dehydrogenase; Provisional
Probab=90.58 E-value=1.1 Score=44.43 Aligned_cols=34 Identities=24% Similarity=0.403 Sum_probs=28.3
Q ss_pred HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516 10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM 44 (563)
Q Consensus 10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~ 44 (563)
+++++++|.| .||||.++++.|+..|. ++.+++.
T Consensus 4 ~~~k~~lItGas~giG~~ia~~l~~~G~-~v~~~~r 38 (254)
T PRK07478 4 LNGKVAIITGASSGIGRAAAKLFAREGA-KVVVGAR 38 (254)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence 5677899998 58999999999999998 5777653
No 204
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=90.56 E-value=1 Score=50.36 Aligned_cols=162 Identities=12% Similarity=0.182 Sum_probs=78.9
Q ss_pred CCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCccc----CccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEe
Q 008516 12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSN----LNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH 87 (563)
Q Consensus 12 ~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sN----LnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~ 87 (563)
-++|.|||+|..|+.++.+|+..|. .++++|.+.=.... +.+.+ =+...-|+...+.+.+.+.++ +..
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~aG~-~V~l~d~~~e~l~~~~~~i~~~l-~~~~~~G~~~~~~~~~~~~~i------~~~ 76 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASAGH-QVLLYDIRAEALARAIAGIEARL-NSLVTKGKLTAEECERTLKRL------IPV 76 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHH-HHHHhcCCCCHHHHHHHHhcc------EEe
Confidence 4579999999999999999999997 58888754321111 00000 000111322222222222222 111
Q ss_pred ccCCCCCcchHhhcccccEEEEcc-CCHHHHHHHHHHHHhc--CCCEEEeccccceee-EEEEeCCCCccccccCC-CCC
Q 008516 88 HANVKDPKFNVEFFKQFNVVLNGL-DNLDARRHVNRLCLAA--DVPLVESGTTGFLGQ-VTVHVKGKTECYECQPK-PAP 162 (563)
Q Consensus 88 ~~~i~~~~~~~~~~~~~dvVi~al-Dn~~ar~~in~~c~~~--~~pli~~gt~G~~G~-v~v~~~~~t~Cy~C~~~-~~~ 162 (563)
. . .+-+.++|+||.|+ ++.+.+..+-+..... .-.++.+.|....-. +.-.......+...+.- |++
T Consensus 77 -----~-~--~~~l~~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i~~iA~~~~~p~r~~G~HFf~Pap 148 (503)
T TIGR02279 77 -----T-D--LHALADAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSITAIAAGLARPERVAGLHFFNPAP 148 (503)
T ss_pred -----C-C--HHHhCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHhcCcccceEEEeccCccc
Confidence 1 1 12257899999986 4455555543322221 123455444432211 00001111112222322 233
Q ss_pred CCCCceeeccCCCCchhHHHHHHHHHHHH
Q 008516 163 KTYPVCTITSTPSKFVHCIVWAKDLLFAK 191 (563)
Q Consensus 163 ~~~p~cti~~~p~~~~hci~~a~~~lf~~ 191 (563)
. -+.-.+...+.+....+..+++ +++.
T Consensus 149 v-~~LvEvv~g~~Ts~e~~~~~~~-l~~~ 175 (503)
T TIGR02279 149 V-MALVEVVSGLATAAEVAEQLYE-TALA 175 (503)
T ss_pred c-CceEEEeCCCCCCHHHHHHHHH-HHHH
Confidence 3 2555666666667777887777 4544
No 205
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=90.56 E-value=1.2 Score=44.33 Aligned_cols=33 Identities=21% Similarity=0.479 Sum_probs=27.3
Q ss_pred CCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516 12 GAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMD 45 (563)
Q Consensus 12 ~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~D 45 (563)
+++|+|.|+ |+||.++++.|+..|. ++.++|.+
T Consensus 2 ~k~ilItG~~~~IG~~la~~l~~~g~-~vi~~~r~ 35 (259)
T PRK12384 2 NQVAVVIGGGQTLGAFLCHGLAEEGY-RVAVADIN 35 (259)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence 467999985 7999999999999996 67777743
No 206
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=90.46 E-value=0.97 Score=41.61 Aligned_cols=61 Identities=21% Similarity=0.252 Sum_probs=42.3
Q ss_pred CcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccCC
Q 008516 13 AKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV 91 (563)
Q Consensus 13 ~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~i 91 (563)
+.++|.| .||||-++++.|+..|-.++.+++.+ ....+.+.+.+.+... +.++.....++
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~-----------------~~~~~~~~l~~~l~~~--~~~~~~~~~D~ 61 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRGARVVILTSRS-----------------EDSEGAQELIQELKAP--GAKITFIECDL 61 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESS-----------------CHHHHHHHHHHHHHHT--TSEEEEEESET
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeec-----------------cccccccccccccccc--ccccccccccc
Confidence 3578887 89999999999999998888887643 1123444445555533 36777776665
Q ss_pred C
Q 008516 92 K 92 (563)
Q Consensus 92 ~ 92 (563)
.
T Consensus 62 ~ 62 (167)
T PF00106_consen 62 S 62 (167)
T ss_dssp T
T ss_pred c
Confidence 4
No 207
>PRK07814 short chain dehydrogenase; Provisional
Probab=90.42 E-value=1.2 Score=44.65 Aligned_cols=35 Identities=20% Similarity=0.399 Sum_probs=29.5
Q ss_pred HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516 10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD 45 (563)
Q Consensus 10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D 45 (563)
+.+++++|.| .||||.++++.|+..|. ++.++|.+
T Consensus 8 ~~~~~vlItGasggIG~~~a~~l~~~G~-~Vi~~~r~ 43 (263)
T PRK07814 8 LDDQVAVVTGAGRGLGAAIALAFAEAGA-DVLIAART 43 (263)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence 5678899998 55899999999999998 78887754
No 208
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=90.40 E-value=1 Score=44.42 Aligned_cols=33 Identities=33% Similarity=0.448 Sum_probs=28.7
Q ss_pred HcCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEe
Q 008516 10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIID 43 (563)
Q Consensus 10 L~~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD 43 (563)
|++++++|.|+ |+||..+++.|+..|. ++.+++
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G~-~vi~~~ 36 (248)
T TIGR01832 3 LEGKVALVTGANTGLGQGIAVGLAEAGA-DIVGAG 36 (248)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEc
Confidence 57789999996 8999999999999997 577765
No 209
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=90.37 E-value=0.77 Score=48.53 Aligned_cols=92 Identities=18% Similarity=0.195 Sum_probs=57.3
Q ss_pred HHHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEe
Q 008516 8 EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH 87 (563)
Q Consensus 8 ~kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~ 87 (563)
+.+..++|.|+|+|+||.++++.|...| ..|.- ....-..++. + .+.+..
T Consensus 158 ~~~~gK~vgilG~G~IG~~ia~rL~~Fg-~~i~y-----------------~~r~~~~~~~--~----~~~~~~------ 207 (336)
T KOG0069|consen 158 YDLEGKTVGILGLGRIGKAIAKRLKPFG-CVILY-----------------HSRTQLPPEE--A----YEYYAE------ 207 (336)
T ss_pred ccccCCEEEEecCcHHHHHHHHhhhhcc-ceeee-----------------ecccCCchhh--H----HHhccc------
Confidence 4678899999999999999999999855 33332 1111111111 1 111111
Q ss_pred ccCCCCCcchHhhcccccEEEE-ccCCHHHHHHHHHHHHhc---CCCEEEec
Q 008516 88 HANVKDPKFNVEFFKQFNVVLN-GLDNLDARRHVNRLCLAA---DVPLVESG 135 (563)
Q Consensus 88 ~~~i~~~~~~~~~~~~~dvVi~-alDn~~ar~~in~~c~~~---~~pli~~g 135 (563)
....++++.++|+|+. +-.+.+.+..+|+....+ +.-+|+.+
T Consensus 208 ------~~d~~~~~~~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~a 253 (336)
T KOG0069|consen 208 ------FVDIEELLANSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTA 253 (336)
T ss_pred ------ccCHHHHHhhCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEecc
Confidence 1123678899997655 668899999999875443 33455554
No 210
>PRK06181 short chain dehydrogenase; Provisional
Probab=90.37 E-value=1.4 Score=44.00 Aligned_cols=31 Identities=32% Similarity=0.453 Sum_probs=26.5
Q ss_pred CcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeC
Q 008516 13 AKVLMVGA-GGIGCELLKTLALSGFQDIHIIDM 44 (563)
Q Consensus 13 ~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~ 44 (563)
++|+|.|+ |++|.++++.|+..|. +++++|.
T Consensus 2 ~~vlVtGasg~iG~~la~~l~~~g~-~Vi~~~r 33 (263)
T PRK06181 2 KVVIITGASEGIGRALAVRLARAGA-QLVLAAR 33 (263)
T ss_pred CEEEEecCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence 57899986 9999999999999996 7877764
No 211
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=90.33 E-value=1.9 Score=44.21 Aligned_cols=80 Identities=18% Similarity=0.286 Sum_probs=50.6
Q ss_pred CCcEEEECCcHHHHHHHHHHHHhCC---CeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEec
Q 008516 12 GAKVLMVGAGGIGCELLKTLALSGF---QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH 88 (563)
Q Consensus 12 ~~~VlvvGaGgiG~ellknLal~Gv---g~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~ 88 (563)
+.+|.+||+|-+|..+++.|...|. .+|.+.|.+ +.+++.+++ ++ ++++ ..
T Consensus 2 ~~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~-------------------~~~~~~l~~---~~--g~~~--~~ 55 (272)
T PRK12491 2 NKQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLN-------------------VSNLKNASD---KY--GITI--TT 55 (272)
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCC-------------------HHHHHHHHH---hc--CcEE--eC
Confidence 5689999999999999999999985 246654421 123222222 12 2222 11
Q ss_pred cCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHH
Q 008516 89 ANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLC 124 (563)
Q Consensus 89 ~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c 124 (563)
...+..++.|+||-|+-....+..+.++.
T Consensus 56 -------~~~e~~~~aDiIiLavkP~~~~~vl~~l~ 84 (272)
T PRK12491 56 -------NNNEVANSADILILSIKPDLYSSVINQIK 84 (272)
T ss_pred -------CcHHHHhhCCEEEEEeChHHHHHHHHHHH
Confidence 12345678999999998666666666654
No 212
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=90.26 E-value=2.7 Score=43.69 Aligned_cols=30 Identities=37% Similarity=0.598 Sum_probs=25.3
Q ss_pred CcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEe
Q 008516 13 AKVLMVG-AGGIGCELLKTLALSGFQDIHIID 43 (563)
Q Consensus 13 ~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD 43 (563)
++|+|.| .|.||..+++.|+..|. +++++|
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~ 31 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQNGH-DVVILD 31 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHHCCC-eEEEEe
Confidence 3799999 59999999999999986 466665
No 213
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=90.20 E-value=1 Score=46.75 Aligned_cols=34 Identities=24% Similarity=0.374 Sum_probs=28.0
Q ss_pred HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516 10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM 44 (563)
Q Consensus 10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~ 44 (563)
+.+++++|.| .||||.++++.|+..|. ++.+++.
T Consensus 4 ~~~k~vlVTGas~gIG~~~a~~L~~~G~-~V~~~~r 38 (322)
T PRK07453 4 DAKGTVIITGASSGVGLYAAKALAKRGW-HVIMACR 38 (322)
T ss_pred CCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEEC
Confidence 3467899998 59999999999999995 6777763
No 214
>PRK06138 short chain dehydrogenase; Provisional
Probab=90.02 E-value=1.2 Score=44.00 Aligned_cols=34 Identities=26% Similarity=0.451 Sum_probs=28.2
Q ss_pred HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516 10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM 44 (563)
Q Consensus 10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~ 44 (563)
|++++++|.| .|++|..+++.|+..|. ++.+++.
T Consensus 3 ~~~k~~lItG~sg~iG~~la~~l~~~G~-~v~~~~r 37 (252)
T PRK06138 3 LAGRVAIVTGAGSGIGRATAKLFAREGA-RVVVADR 37 (252)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHHCCC-eEEEecC
Confidence 5678899998 58999999999999996 5777653
No 215
>PRK12939 short chain dehydrogenase; Provisional
Probab=89.98 E-value=1.5 Score=43.14 Aligned_cols=33 Identities=30% Similarity=0.589 Sum_probs=27.5
Q ss_pred HcCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEe
Q 008516 10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIID 43 (563)
Q Consensus 10 L~~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD 43 (563)
+.+++++|.|+ |+||.++++.|+..|. ++.+++
T Consensus 5 ~~~~~vlItGa~g~iG~~la~~l~~~G~-~v~~~~ 38 (250)
T PRK12939 5 LAGKRALVTGAARGLGAAFAEALAEAGA-TVAFND 38 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHcCC-EEEEEe
Confidence 56788999995 8999999999999997 466654
No 216
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=89.97 E-value=1.5 Score=45.86 Aligned_cols=35 Identities=26% Similarity=0.303 Sum_probs=29.0
Q ss_pred HcCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516 10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMD 45 (563)
Q Consensus 10 L~~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~D 45 (563)
+.+++|+|.|+ |+||+++++.|+..|. +++++|.+
T Consensus 4 ~~~~~vlVTGatGfiG~~l~~~L~~~G~-~V~~~~r~ 39 (340)
T PLN02653 4 PPRKVALITGITGQDGSYLTEFLLSKGY-EVHGIIRR 39 (340)
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHCCC-EEEEEecc
Confidence 45688999995 8999999999999997 57777643
No 217
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=89.93 E-value=1.5 Score=44.24 Aligned_cols=35 Identities=31% Similarity=0.579 Sum_probs=29.6
Q ss_pred HHcCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeC
Q 008516 9 AIKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDM 44 (563)
Q Consensus 9 kL~~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~ 44 (563)
.+++++++|.|+ ||||.++++.|+..|. ++.++|.
T Consensus 7 ~~~~k~vlVtGas~giG~~ia~~l~~~G~-~V~~~~r 42 (278)
T PRK08277 7 SLKGKVAVITGGGGVLGGAMAKELARAGA-KVAILDR 42 (278)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence 467788999985 8999999999999998 5777764
No 218
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=89.90 E-value=2.2 Score=42.63 Aligned_cols=39 Identities=31% Similarity=0.502 Sum_probs=31.2
Q ss_pred CHHHHHHHcCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEE
Q 008516 3 SERQLEAIKGAKVLMVGA-GGIGCELLKTLALSGFQDIHII 42 (563)
Q Consensus 3 ~~~~q~kL~~~~VlvvGa-GgiG~ellknLal~Gvg~I~ii 42 (563)
.||.-+....++|+|+|+ |++|..+++.|+..|. +++.+
T Consensus 8 ~~~~~~~~~~~~ilItGasG~iG~~l~~~L~~~g~-~V~~~ 47 (251)
T PLN00141 8 SEEDAENVKTKTVFVAGATGRTGKRIVEQLLAKGF-AVKAG 47 (251)
T ss_pred cccccccccCCeEEEECCCcHHHHHHHHHHHhCCC-EEEEE
Confidence 455666777899999995 9999999999999886 35443
No 219
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=89.90 E-value=0.44 Score=46.65 Aligned_cols=36 Identities=25% Similarity=0.519 Sum_probs=31.6
Q ss_pred HHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516 9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD 45 (563)
Q Consensus 9 kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D 45 (563)
.|++++|.|+|.|.+|..+++.|...|. +++++|.+
T Consensus 25 ~l~gk~v~I~G~G~vG~~~A~~L~~~G~-~Vvv~D~~ 60 (200)
T cd01075 25 SLEGKTVAVQGLGKVGYKLAEHLLEEGA-KLIVADIN 60 (200)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCC
Confidence 3678899999999999999999999997 67787754
No 220
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=89.89 E-value=1.7 Score=46.43 Aligned_cols=33 Identities=24% Similarity=0.349 Sum_probs=28.4
Q ss_pred cCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeC
Q 008516 11 KGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDM 44 (563)
Q Consensus 11 ~~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~ 44 (563)
.+++|+|.|+ |-||+.+++.|...|. +++.+|.
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~-~V~~v~r 53 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAEGH-YIIASDW 53 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhCCC-EEEEEEe
Confidence 4678999996 9999999999999985 6888774
No 221
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=89.87 E-value=0.69 Score=51.32 Aligned_cols=122 Identities=12% Similarity=0.226 Sum_probs=67.3
Q ss_pred CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCch--HHHHHHHHHHhh-CCCceEEEec-
Q 008516 13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQS--KAKVARDAVLKF-RPQMSITAHH- 88 (563)
Q Consensus 13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~--Ka~va~~~l~~~-np~v~I~~~~- 88 (563)
++|.|||+|..|..++.||+..|+ ++++.|.+.=....+...- ..-|.. -+...++.+..+ .|++-+....
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~-~V~v~dr~~~~~~~l~~~~----~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~ 76 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGF-KISVYNRTYEKTEEFVKKA----KEGNTRVKGYHTLEELVNSLKKPRKVILLIKA 76 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHhh----hhcCCcceecCCHHHHHhcCCCCCEEEEEeCC
Confidence 579999999999999999999998 6888886443222221100 000100 122233444433 2443333211
Q ss_pred cCCCCCcc--hHhhcccccEEEEccCC-HHHHHHHHHHHHhcCCCEEEeccccc
Q 008516 89 ANVKDPKF--NVEFFKQFNVVLNGLDN-LDARRHVNRLCLAADVPLVESGTTGF 139 (563)
Q Consensus 89 ~~i~~~~~--~~~~~~~~dvVi~alDn-~~ar~~in~~c~~~~~pli~~gt~G~ 139 (563)
....+... -...++.-|+||++... .+.-....+.+...++.++++++.|-
T Consensus 77 ~~~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG 130 (470)
T PTZ00142 77 GEAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGG 130 (470)
T ss_pred hHHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCC
Confidence 11111100 12234556899996543 33333334677788999999998873
No 222
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=89.82 E-value=2.3 Score=44.56 Aligned_cols=32 Identities=25% Similarity=0.464 Sum_probs=26.7
Q ss_pred CcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeC
Q 008516 13 AKVLMVGA-GGIGCELLKTLALSGFQDIHIIDM 44 (563)
Q Consensus 13 ~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~ 44 (563)
++|+|.|+ |.||+.+++.|...|...+.++|.
T Consensus 2 ~~vlVtGatGfIG~~l~~~L~~~g~~~v~~~~~ 34 (355)
T PRK10217 2 RKILITGGAGFIGSALVRYIINETSDAVVVVDK 34 (355)
T ss_pred cEEEEEcCCcHHHHHHHHHHHHcCCCEEEEEec
Confidence 47999985 889999999999999766666663
No 223
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=89.82 E-value=1.9 Score=46.47 Aligned_cols=33 Identities=33% Similarity=0.552 Sum_probs=27.1
Q ss_pred cCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeC
Q 008516 11 KGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDM 44 (563)
Q Consensus 11 ~~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~ 44 (563)
...+|+|.|+ |.||..+++.|...|. ++++++.
T Consensus 59 ~~~kVLVtGatG~IG~~l~~~Ll~~G~-~V~~l~R 92 (390)
T PLN02657 59 KDVTVLVVGATGYIGKFVVRELVRRGY-NVVAVAR 92 (390)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEEe
Confidence 3568999985 9999999999999996 5666653
No 224
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.78 E-value=1.8 Score=47.65 Aligned_cols=40 Identities=30% Similarity=0.315 Sum_probs=34.1
Q ss_pred HHHHHHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516 5 RQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD 45 (563)
Q Consensus 5 ~~q~kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D 45 (563)
|...-+.++||+|+|.|+.|..+++.|...|. .+++.|.+
T Consensus 7 ~~~~~~~~~~i~v~G~G~sG~a~a~~L~~~G~-~V~~~D~~ 46 (458)
T PRK01710 7 EFKKFIKNKKVAVVGIGVSNIPLIKFLVKLGA-KVTAFDKK 46 (458)
T ss_pred HHhhhhcCCeEEEEcccHHHHHHHHHHHHCCC-EEEEECCC
Confidence 34456778899999999999999999999997 68888854
No 225
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=89.72 E-value=0.41 Score=50.71 Aligned_cols=35 Identities=23% Similarity=0.329 Sum_probs=32.5
Q ss_pred HHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEe
Q 008516 9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIID 43 (563)
Q Consensus 9 kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD 43 (563)
.|.+++|+|||+|-+|..++++|...|+++|+++.
T Consensus 171 ~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~n 205 (338)
T PRK00676 171 KSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCS 205 (338)
T ss_pred CccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEc
Confidence 47889999999999999999999999999999973
No 226
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=89.68 E-value=0.99 Score=47.24 Aligned_cols=154 Identities=17% Similarity=0.253 Sum_probs=81.7
Q ss_pred CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccC--------cccCccccCCCCCCCCchHHHHHHHHHHhhCCCceE
Q 008516 13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIE--------VSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSI 84 (563)
Q Consensus 13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve--------~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I 84 (563)
++|.|||+|-.|+-++..++..|+ .+++.|...=. ..+|.|+. .-|+-+.+.+.+.+.++.|...
T Consensus 4 ~kv~ViGaG~MG~gIA~~~A~~G~-~V~l~D~~~~~~~~~~~~i~~~l~k~~-----~~g~l~~~~~~~~l~~i~~~~~- 76 (307)
T COG1250 4 KKVAVIGAGVMGAGIAAVFALAGY-DVVLKDISPEALERALAYIEKNLEKLV-----EKGKLTEEEADAALARITPTTD- 76 (307)
T ss_pred cEEEEEcccchhHHHHHHHhhcCC-ceEEEeCCHHHHHHHHHHHHHHHHHHH-----hcCCCChhhHHHHHhhccccCc-
Confidence 589999999999999999999666 68888865111 11233321 1144444444444444443222
Q ss_pred EEeccCCCCCcchHhhcccccEEEEcc-CCHHHHHHHHHHHHhcCC--CEEEeccccceeeE-EEEeCCCCccccccCCC
Q 008516 85 TAHHANVKDPKFNVEFFKQFNVVLNGL-DNLDARRHVNRLCLAADV--PLVESGTTGFLGQV-TVHVKGKTECYECQPKP 160 (563)
Q Consensus 85 ~~~~~~i~~~~~~~~~~~~~dvVi~al-Dn~~ar~~in~~c~~~~~--pli~~gt~G~~G~v-~v~~~~~t~Cy~C~~~~ 160 (563)
..-++++|+||-|. -|.+..+.+-+..-..-. .++.+.|++....- .-......-|..=+.-.
T Consensus 77 -------------~~~l~~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSsl~it~ia~~~~rper~iG~HFfN 143 (307)
T COG1250 77 -------------LAALKDADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSLSITELAEALKRPERFIGLHFFN 143 (307)
T ss_pred -------------hhHhccCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCCCCHHHHHHHhCCchhEEEEeccC
Confidence 12478999999975 667766655444333322 36777776543110 00001111122222233
Q ss_pred CCCCCCceeeccCCCCchhHHHHHHH
Q 008516 161 APKTYPVCTITSTPSKFVHCIVWAKD 186 (563)
Q Consensus 161 ~~~~~p~cti~~~p~~~~hci~~a~~ 186 (563)
++.--|.-.+-....+..-++.-+.+
T Consensus 144 P~~~m~LVEvI~g~~T~~e~~~~~~~ 169 (307)
T COG1250 144 PVPLMPLVEVIRGEKTSDETVERVVE 169 (307)
T ss_pred CCCcceeEEEecCCCCCHHHHHHHHH
Confidence 33444554544445555555555554
No 227
>PRK06172 short chain dehydrogenase; Provisional
Probab=89.67 E-value=1.2 Score=44.05 Aligned_cols=34 Identities=29% Similarity=0.446 Sum_probs=28.7
Q ss_pred HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516 10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM 44 (563)
Q Consensus 10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~ 44 (563)
+.+++++|.| .|+||.++++.|+..|. ++.+++.
T Consensus 5 l~~k~ilItGas~~iG~~ia~~l~~~G~-~v~~~~r 39 (253)
T PRK06172 5 FSGKVALVTGGAAGIGRATALAFAREGA-KVVVADR 39 (253)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeC
Confidence 5678999998 58999999999999996 5777764
No 228
>PLN02214 cinnamoyl-CoA reductase
Probab=89.67 E-value=3 Score=43.95 Aligned_cols=107 Identities=17% Similarity=0.169 Sum_probs=61.5
Q ss_pred HcCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEec
Q 008516 10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH 88 (563)
Q Consensus 10 L~~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~ 88 (563)
+++++|+|.|+ |.||+.+++.|+..|. +++.++.+. ++. +.. ..+.+... .-+++.+.
T Consensus 8 ~~~~~vlVTGatGfIG~~l~~~L~~~G~-~V~~~~r~~---~~~--------------~~~-~~~~~~~~--~~~~~~~~ 66 (342)
T PLN02214 8 PAGKTVCVTGAGGYIASWIVKILLERGY-TVKGTVRNP---DDP--------------KNT-HLRELEGG--KERLILCK 66 (342)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCcC-EEEEEeCCc---hhh--------------hHH-HHHHhhCC--CCcEEEEe
Confidence 46788999996 9999999999999996 466554321 000 000 01111111 11355556
Q ss_pred cCCCCCcchHhhcccccEEEEcc----CC--------HHHHHHHHHHHHhcCC-CEEEeccc
Q 008516 89 ANVKDPKFNVEFFKQFNVVLNGL----DN--------LDARRHVNRLCLAADV-PLVESGTT 137 (563)
Q Consensus 89 ~~i~~~~~~~~~~~~~dvVi~al----Dn--------~~ar~~in~~c~~~~~-pli~~gt~ 137 (563)
.++++...-.+.++++|+||.+. ++ ...-..+-+.|++.++ .+|..++.
T Consensus 67 ~Dl~d~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~nv~gt~~ll~aa~~~~v~r~V~~SS~ 128 (342)
T PLN02214 67 ADLQDYEALKAAIDGCDGVFHTASPVTDDPEQMVEPAVNGAKFVINAAAEAKVKRVVITSSI 128 (342)
T ss_pred cCcCChHHHHHHHhcCCEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeccc
Confidence 66654333345667889888853 11 2222344556677775 47776654
No 229
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=89.66 E-value=0.48 Score=50.32 Aligned_cols=59 Identities=19% Similarity=0.292 Sum_probs=34.6
Q ss_pred cchhhHHHHHHHHHHHHHHHHHhcCccccc--eeeecccccccccccccCCCCCCCCcccCCC
Q 008516 375 HAVATTNAIIAGLIVIEAIKVLLKDTDKYR--MTYCLEHITKKMLLMPVEPYEPNKSCYVCSE 435 (563)
Q Consensus 375 PAIATTnAiVAGl~vlE~~K~l~~~~~~~r--~~f~~~~~~~~~~~~p~~~~~pn~~C~vC~~ 435 (563)
+.++++.+++|++++.|++|+|.|..+... ...+...... ....... .-++|+|++|+.
T Consensus 185 Gvl~p~v~~iaslqa~EalK~L~g~~~~l~~~Ll~~D~~~~~-~~~~~~~-~~k~p~Cp~Cg~ 245 (338)
T PRK12475 185 GIIQPAVQIVVAYQVTEALKILVEDFEALRETFLSFDIWNNQ-NMSIKVN-KQKKDTCPSCGL 245 (338)
T ss_pred CcCchHHHHHHHHHHHHHHHHHhCCCCCCcCeEEEEECCCCe-EEEEEec-cCCCCCCCcCCC
Confidence 445556689999999999999998654332 2222222110 0111111 124799999984
No 230
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=89.64 E-value=0.44 Score=52.06 Aligned_cols=35 Identities=37% Similarity=0.619 Sum_probs=32.3
Q ss_pred HcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516 10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM 44 (563)
Q Consensus 10 L~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~ 44 (563)
+.+.+|+|+|+|++|..+++.|...|+.+++++|.
T Consensus 180 ~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r 214 (423)
T PRK00045 180 LSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANR 214 (423)
T ss_pred ccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeC
Confidence 67899999999999999999999999999999864
No 231
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=89.64 E-value=1.9 Score=45.26 Aligned_cols=34 Identities=29% Similarity=0.622 Sum_probs=30.0
Q ss_pred cCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516 11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM 44 (563)
Q Consensus 11 ~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~ 44 (563)
...+|+|.|+|++|...+..+..+|..++.++|.
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~ 202 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADV 202 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeC
Confidence 4678999999999999999998999988888763
No 232
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=89.57 E-value=1.5 Score=43.03 Aligned_cols=35 Identities=26% Similarity=0.542 Sum_probs=29.8
Q ss_pred HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516 10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD 45 (563)
Q Consensus 10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D 45 (563)
+.+.+++|.| .|++|..+++.|+..|. ++.+++.+
T Consensus 5 ~~~~~vlVtG~sg~iG~~l~~~L~~~G~-~Vi~~~r~ 40 (239)
T PRK07666 5 LQGKNALITGAGRGIGRAVAIALAKEGV-NVGLLART 40 (239)
T ss_pred CCCCEEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 5677899998 67999999999999998 78888744
No 233
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=89.57 E-value=0.43 Score=49.75 Aligned_cols=33 Identities=27% Similarity=0.406 Sum_probs=29.3
Q ss_pred CCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516 12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD 45 (563)
Q Consensus 12 ~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D 45 (563)
..||+|+|+||+|+.++-.|+++|. .+++++..
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G~-~V~lv~r~ 34 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAGL-PVRLILRD 34 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCCC-CeEEEEec
Confidence 5689999999999999999999995 68888754
No 234
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=89.53 E-value=1.5 Score=43.58 Aligned_cols=34 Identities=35% Similarity=0.613 Sum_probs=28.9
Q ss_pred HcCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeC
Q 008516 10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDM 44 (563)
Q Consensus 10 L~~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~ 44 (563)
+++++++|.|+ |+||..+++.|+..|. ++.+++.
T Consensus 5 ~~~~~vlItGasg~iG~~la~~l~~~G~-~v~~~~r 39 (262)
T PRK13394 5 LNGKTAVVTGAASGIGKEIALELARAGA-AVAIADL 39 (262)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEeC
Confidence 56788999996 9999999999999998 5777764
No 235
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=89.51 E-value=0.49 Score=48.12 Aligned_cols=107 Identities=15% Similarity=0.252 Sum_probs=63.5
Q ss_pred HHHcCCcEEEECCcHHHHHHHHHHHHh----CC------CeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHh
Q 008516 8 EAIKGAKVLMVGAGGIGCELLKTLALS----GF------QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLK 77 (563)
Q Consensus 8 ~kL~~~~VlvvGaGgiG~ellknLal~----Gv------g~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~ 77 (563)
.+|.+.||+++|+|+-|.-+++.|+.. |+ ++|.++|.+-+=..+ .+|.-..| +...+.
T Consensus 21 ~~l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~--------r~~l~~~~----~~~a~~ 88 (255)
T PF03949_consen 21 KKLSDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDD--------REDLNPHK----KPFARK 88 (255)
T ss_dssp S-GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTT--------TSSHSHHH----HHHHBS
T ss_pred CCHHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEecc--------CccCChhh----hhhhcc
Confidence 368999999999999999999999999 99 899999977542111 11221112 223333
Q ss_pred hCCCceEEEeccCCCCCcchHhhcccc--cEEEEccC--CHHHHHHHHHHHHhcCCCEEEecc
Q 008516 78 FRPQMSITAHHANVKDPKFNVEFFKQF--NVVLNGLD--NLDARRHVNRLCLAADVPLVESGT 136 (563)
Q Consensus 78 ~np~v~I~~~~~~i~~~~~~~~~~~~~--dvVi~alD--n~~ar~~in~~c~~~~~pli~~gt 136 (563)
.+|.-.. ..-.+.+++. |++|.+.. +.=....+-.|+.....|+|..-+
T Consensus 89 ~~~~~~~----------~~L~eav~~~kPtvLIG~S~~~g~ft~evv~~Ma~~~erPIIF~LS 141 (255)
T PF03949_consen 89 TNPEKDW----------GSLLEAVKGAKPTVLIGLSGQGGAFTEEVVRAMAKHNERPIIFPLS 141 (255)
T ss_dssp SSTTT------------SSHHHHHHCH--SEEEECSSSTTSS-HHHHHHCHHHSSSEEEEE-S
T ss_pred Ccccccc----------cCHHHHHHhcCCCEEEEecCCCCcCCHHHHHHHhccCCCCEEEECC
Confidence 3332111 0123455555 77777542 222466777778777888887654
No 236
>PRK07024 short chain dehydrogenase; Provisional
Probab=89.49 E-value=1.3 Score=44.34 Aligned_cols=33 Identities=27% Similarity=0.469 Sum_probs=28.0
Q ss_pred CCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516 12 GAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD 45 (563)
Q Consensus 12 ~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D 45 (563)
.++|+|.| .||||.++++.|+..|. ++.++|.+
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~G~-~v~~~~r~ 35 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQGA-TLGLVARR 35 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 45788987 78999999999999997 68887753
No 237
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=89.45 E-value=0.96 Score=52.73 Aligned_cols=162 Identities=15% Similarity=0.199 Sum_probs=89.6
Q ss_pred CcEEEECCcHHHHHHHHHHH-HhCCCeEEEEeCCccCcccCcccc--C---CC-CCCCCchHHHHHHHHHHhhCCCceEE
Q 008516 13 AKVLMVGAGGIGCELLKTLA-LSGFQDIHIIDMDTIEVSNLNRQF--L---FR-QSHVGQSKAKVARDAVLKFRPQMSIT 85 (563)
Q Consensus 13 ~~VlvvGaGgiG~ellknLa-l~Gvg~I~iiD~D~Ve~sNLnRqf--L---f~-~~diGk~Ka~va~~~l~~~np~v~I~ 85 (563)
++|.|||+|.+|+.++-.++ .+|+ .++++|.+.= .+.|-. . +. ...-|+...+...+.+. +|+
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~-~V~l~d~~~~---~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~------~i~ 374 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGI-PVRIKDINPQ---GINNALKYAWKLLDKGVKRRHMTPAERDNQMA------LIT 374 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCC-eEEEEeCCHH---HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHc------CeE
Confidence 47999999999999999998 4897 6899986532 121110 0 00 00001100111111111 122
Q ss_pred EeccCCCCCcchHhhcccccEEEEcc-CCHHHHHHHHHHHHhcCC--CEEEecccccee-eEEEEeCCCCccccccCCCC
Q 008516 86 AHHANVKDPKFNVEFFKQFNVVLNGL-DNLDARRHVNRLCLAADV--PLVESGTTGFLG-QVTVHVKGKTECYECQPKPA 161 (563)
Q Consensus 86 ~~~~~i~~~~~~~~~~~~~dvVi~al-Dn~~ar~~in~~c~~~~~--pli~~gt~G~~G-~v~v~~~~~t~Cy~C~~~~~ 161 (563)
... +.+-++++|+||.|. .+.+..+.+-+.....-. .++.+.|.+..= .+.-......-+...+.-.+
T Consensus 375 ~~~--------~~~~~~~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~~~~~p~r~~g~HffnP 446 (699)
T TIGR02440 375 GTT--------DYRGFKDVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSSLPIGQIAAAASRPENVIGLHYFSP 446 (699)
T ss_pred EeC--------ChHHhccCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHHHHHhcCCcccEEEEecCCc
Confidence 111 123468999999975 566766665544433322 356666665321 11111122233444455555
Q ss_pred CCCCCceeeccCCCCchhHHHHHHHHHHHHHhC
Q 008516 162 PKTYPVCTITSTPSKFVHCIVWAKDLLFAKLFG 194 (563)
Q Consensus 162 ~~~~p~cti~~~p~~~~hci~~a~~~lf~~lf~ 194 (563)
+..-|...|...+.+...++.++.+ +... .|
T Consensus 447 ~~~~~lVEvv~g~~T~~~~~~~~~~-~~~~-~g 477 (699)
T TIGR02440 447 VEKMPLVEVIPHAGTSEQTIATTVA-LAKK-QG 477 (699)
T ss_pred cccCceEEEeCCCCCCHHHHHHHHH-HHHH-cC
Confidence 6667888888888888999999988 4554 44
No 238
>PRK07680 late competence protein ComER; Validated
Probab=89.34 E-value=1.4 Score=45.04 Aligned_cols=78 Identities=19% Similarity=0.318 Sum_probs=49.0
Q ss_pred cEEEECCcHHHHHHHHHHHHhCC---CeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccC
Q 008516 14 KVLMVGAGGIGCELLKTLALSGF---QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN 90 (563)
Q Consensus 14 ~VlvvGaGgiG~ellknLal~Gv---g~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~ 90 (563)
+|.|||+|.+|..+++.|...|+ ..++++|.+. .+++. +.+..+++++. .
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~-------------------~~~~~----~~~~~~g~~~~--~-- 54 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTP-------------------AKAYH----IKERYPGIHVA--K-- 54 (273)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCH-------------------HHHHH----HHHHcCCeEEE--C--
Confidence 69999999999999999999985 3566655321 12222 22222333221 1
Q ss_pred CCCCcchHhhcccccEEEEccCCHHHHHHHHHH
Q 008516 91 VKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRL 123 (563)
Q Consensus 91 i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~ 123 (563)
...+...+.|+||.++-....+..+.++
T Consensus 55 -----~~~~~~~~aDiVilav~p~~~~~vl~~l 82 (273)
T PRK07680 55 -----TIEEVISQSDLIFICVKPLDIYPLLQKL 82 (273)
T ss_pred -----CHHHHHHhCCEEEEecCHHHHHHHHHHH
Confidence 1234567899999998655555555554
No 239
>PRK12829 short chain dehydrogenase; Provisional
Probab=89.27 E-value=0.96 Score=44.96 Aligned_cols=38 Identities=34% Similarity=0.669 Sum_probs=31.7
Q ss_pred HHHHHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516 6 QLEAIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM 44 (563)
Q Consensus 6 ~q~kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~ 44 (563)
....+++++++|.| .|++|..+++.|+..|. ++.+++.
T Consensus 5 ~~~~~~~~~vlItGa~g~iG~~~a~~L~~~g~-~V~~~~r 43 (264)
T PRK12829 5 LLKPLDGLRVLVTGGASGIGRAIAEAFAEAGA-RVHVCDV 43 (264)
T ss_pred HhhccCCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeC
Confidence 34457889999998 59999999999999998 4788763
No 240
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=89.25 E-value=0.5 Score=48.95 Aligned_cols=35 Identities=23% Similarity=0.462 Sum_probs=31.4
Q ss_pred HHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516 9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM 44 (563)
Q Consensus 9 kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~ 44 (563)
.|.+++|+|+|+|++|..+++.|...|. +++++|.
T Consensus 148 ~l~gk~v~IiG~G~iG~avA~~L~~~G~-~V~v~~R 182 (287)
T TIGR02853 148 TIHGSNVMVLGFGRTGMTIARTFSALGA-RVFVGAR 182 (287)
T ss_pred CCCCCEEEEEcChHHHHHHHHHHHHCCC-EEEEEeC
Confidence 4678999999999999999999999997 8888764
No 241
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=89.24 E-value=1.5 Score=43.23 Aligned_cols=34 Identities=41% Similarity=0.648 Sum_probs=28.2
Q ss_pred HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516 10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM 44 (563)
Q Consensus 10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~ 44 (563)
+++++|+|.| .|++|.++++.|+..|. ++.++|.
T Consensus 2 ~~~~~vlItG~sg~iG~~la~~l~~~g~-~v~~~~r 36 (258)
T PRK12429 2 LKGKVALVTGAASGIGLEIALALAKEGA-KVVIADL 36 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeC
Confidence 4567899998 69999999999999987 5666653
No 242
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=89.23 E-value=0.88 Score=47.13 Aligned_cols=77 Identities=14% Similarity=0.345 Sum_probs=55.0
Q ss_pred HHcCCcEEEECCcH-HHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEe
Q 008516 9 AIKGAKVLMVGAGG-IGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH 87 (563)
Q Consensus 9 kL~~~~VlvvGaGg-iG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~ 87 (563)
.|++++|+|||.|. +|..+++.|...|. .+++.+..+
T Consensus 155 ~l~Gk~vvVIGrs~~VG~pla~lL~~~ga-tVtv~~s~t----------------------------------------- 192 (286)
T PRK14175 155 DLEGKNAVVIGRSHIVGQPVSKLLLQKNA-SVTILHSRS----------------------------------------- 192 (286)
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHCCC-eEEEEeCCc-----------------------------------------
Confidence 37899999999999 99999999998885 677776321
Q ss_pred ccCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEeccc
Q 008516 88 HANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTT 137 (563)
Q Consensus 88 ~~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~ 137 (563)
.+ -.+..+++|+||.|+.... .+..--.+.+.-+||.|+.
T Consensus 193 -~~------l~~~~~~ADIVIsAvg~p~---~i~~~~vk~gavVIDvGi~ 232 (286)
T PRK14175 193 -KD------MASYLKDADVIVSAVGKPG---LVTKDVVKEGAVIIDVGNT 232 (286)
T ss_pred -hh------HHHHHhhCCEEEECCCCCc---ccCHHHcCCCcEEEEcCCC
Confidence 00 1355788999999987543 2322224556678888864
No 243
>PRK05876 short chain dehydrogenase; Provisional
Probab=89.22 E-value=1.4 Score=44.75 Aligned_cols=35 Identities=29% Similarity=0.434 Sum_probs=29.0
Q ss_pred HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516 10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD 45 (563)
Q Consensus 10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D 45 (563)
+.+++++|.| .||||.++++.|+..|. ++.++|.+
T Consensus 4 ~~~k~vlVTGas~gIG~ala~~La~~G~-~Vv~~~r~ 39 (275)
T PRK05876 4 FPGRGAVITGGASGIGLATGTEFARRGA-RVVLGDVD 39 (275)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 5677899997 78999999999999998 57777633
No 244
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=89.19 E-value=2.9 Score=48.36 Aligned_cols=38 Identities=26% Similarity=0.382 Sum_probs=29.3
Q ss_pred HHHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516 8 EAIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD 45 (563)
Q Consensus 8 ~kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D 45 (563)
..-++++|+|.| +|-||+.+++.|...|=-+++.+|..
T Consensus 311 ~~~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~r~ 349 (660)
T PRK08125 311 SAKRRTRVLILGVNGFIGNHLTERLLRDDNYEVYGLDIG 349 (660)
T ss_pred hhhcCCEEEEECCCchHHHHHHHHHHhCCCcEEEEEeCC
Confidence 345678899999 59999999999998632367777753
No 245
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=89.06 E-value=0.59 Score=53.66 Aligned_cols=88 Identities=17% Similarity=0.258 Sum_probs=62.0
Q ss_pred CCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccCC
Q 008516 12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV 91 (563)
Q Consensus 12 ~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~i 91 (563)
+.+|+|+|+|.+|..+++.|...|+ +++++|.|.- +++.+ ++. + ...+.++.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~-------------------~v~~~----~~~--g--~~v~~GDa 451 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGV-KMTVLDHDPD-------------------HIETL----RKF--G--MKVFYGDA 451 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCC-CEEEEECCHH-------------------HHHHH----Hhc--C--CeEEEEeC
Confidence 4689999999999999999999998 5889997752 22222 221 2 23455555
Q ss_pred CCCc-chHhhcccccEEEEccCCHHHHHHHHHHHHhc
Q 008516 92 KDPK-FNVEFFKQFNVVLNGLDNLDARRHVNRLCLAA 127 (563)
Q Consensus 92 ~~~~-~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~ 127 (563)
++.. ....-.++++.||.++||.+....+-..+++.
T Consensus 452 t~~~~L~~agi~~A~~vvv~~~d~~~n~~i~~~ar~~ 488 (621)
T PRK03562 452 TRMDLLESAGAAKAEVLINAIDDPQTSLQLVELVKEH 488 (621)
T ss_pred CCHHHHHhcCCCcCCEEEEEeCCHHHHHHHHHHHHHh
Confidence 4321 11233568999999999988888877777765
No 246
>PRK07326 short chain dehydrogenase; Provisional
Probab=89.01 E-value=1.5 Score=42.92 Aligned_cols=34 Identities=29% Similarity=0.595 Sum_probs=27.7
Q ss_pred HcCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeC
Q 008516 10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDM 44 (563)
Q Consensus 10 L~~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~ 44 (563)
+.+.+|+|.|+ |++|..+++.|+..|. ++.+++.
T Consensus 4 ~~~~~ilItGatg~iG~~la~~l~~~g~-~V~~~~r 38 (237)
T PRK07326 4 LKGKVALITGGSKGIGFAIAEALLAEGY-KVAITAR 38 (237)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHCCC-EEEEeeC
Confidence 34678999985 8999999999999987 4777653
No 247
>PLN02572 UDP-sulfoquinovose synthase
Probab=88.98 E-value=4 Score=44.83 Aligned_cols=35 Identities=29% Similarity=0.503 Sum_probs=30.4
Q ss_pred HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516 9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM 44 (563)
Q Consensus 9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~ 44 (563)
++++++|+|.| +|.||+.+++.|+..|. +++++|.
T Consensus 44 ~~~~k~VLVTGatGfIGs~Lv~~L~~~G~-~V~~~d~ 79 (442)
T PLN02572 44 SSKKKKVMVIGGDGYCGWATALHLSKRGY-EVAIVDN 79 (442)
T ss_pred cccCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEec
Confidence 56778999998 59999999999999996 6888884
No 248
>PRK05872 short chain dehydrogenase; Provisional
Probab=88.91 E-value=1.5 Score=45.01 Aligned_cols=34 Identities=35% Similarity=0.689 Sum_probs=29.2
Q ss_pred HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516 10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM 44 (563)
Q Consensus 10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~ 44 (563)
+.+++++|.| .||||.++++.|+..|. ++.+++.
T Consensus 7 l~gk~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r 41 (296)
T PRK05872 7 LAGKVVVVTGAARGIGAELARRLHARGA-KLALVDL 41 (296)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence 5678899998 58999999999999997 6777764
No 249
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=88.90 E-value=2.4 Score=43.48 Aligned_cols=91 Identities=14% Similarity=0.237 Sum_probs=55.2
Q ss_pred cCCcEEEECCcHHHHHHHHHHHHhCC---CeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEe
Q 008516 11 KGAKVLMVGAGGIGCELLKTLALSGF---QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH 87 (563)
Q Consensus 11 ~~~~VlvvGaGgiG~ellknLal~Gv---g~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~ 87 (563)
...+|.+||+|.+|..+++.|...|+ .++++.| |.. ..+++.+++ .. ++++.
T Consensus 2 ~~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~----------r~~--------~~~~~~l~~---~~--g~~~~-- 56 (279)
T PRK07679 2 SIQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSN----------RSN--------ETRLQELHQ---KY--GVKGT-- 56 (279)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCCCcceEEEEC----------CCC--------HHHHHHHHH---hc--CceEe--
Confidence 45689999999999999999999983 2344432 110 112222222 11 23221
Q ss_pred ccCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHh--cCCCEEE
Q 008516 88 HANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLA--ADVPLVE 133 (563)
Q Consensus 88 ~~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~--~~~pli~ 133 (563)
. ...+..++.|+||.|+-+...+..+..+... .+..+|+
T Consensus 57 ~-------~~~e~~~~aDvVilav~p~~~~~vl~~l~~~~~~~~liIs 97 (279)
T PRK07679 57 H-------NKKELLTDANILFLAMKPKDVAEALIPFKEYIHNNQLIIS 97 (279)
T ss_pred C-------CHHHHHhcCCEEEEEeCHHHHHHHHHHHHhhcCCCCEEEE
Confidence 1 1234567899999999888887777766432 3344555
No 250
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=88.85 E-value=2.6 Score=46.25 Aligned_cols=104 Identities=16% Similarity=0.232 Sum_probs=60.6
Q ss_pred cCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEecc
Q 008516 11 KGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA 89 (563)
Q Consensus 11 ~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~ 89 (563)
+.+||+|.| .|-||+.+++.|...|. +++.+|.+... ++ ... . .+. -++ .++....
T Consensus 119 ~~mkILVTGatGFIGs~Lv~~Ll~~G~-~V~~ldr~~~~-----~~------------~~~-~-~~~-~~~--~~~~~~~ 175 (436)
T PLN02166 119 KRLRIVVTGGAGFVGSHLVDKLIGRGD-EVIVIDNFFTG-----RK------------ENL-V-HLF-GNP--RFELIRH 175 (436)
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCCCCc-----cH------------hHh-h-hhc-cCC--ceEEEEC
Confidence 346899998 68999999999999986 67777743211 00 000 0 000 012 2333333
Q ss_pred CCCCCcchHhhcccccEEEEccC-----------------CHHHHHHHHHHHHhcCCCEEEeccccceee
Q 008516 90 NVKDPKFNVEFFKQFNVVLNGLD-----------------NLDARRHVNRLCLAADVPLVESGTTGFLGQ 142 (563)
Q Consensus 90 ~i~~~~~~~~~~~~~dvVi~alD-----------------n~~ar~~in~~c~~~~~pli~~gt~G~~G~ 142 (563)
++.+ ..+.++|+||.+.. |...-..+-+.|..+++.+|..++.+.+|.
T Consensus 176 Di~~-----~~~~~~D~ViHlAa~~~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~g~r~V~~SS~~VYg~ 240 (436)
T PLN02166 176 DVVE-----PILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGARFLLTSTSEVYGD 240 (436)
T ss_pred cccc-----ccccCCCEEEECceeccchhhccCHHHHHHHHHHHHHHHHHHHHHhCCEEEEECcHHHhCC
Confidence 3322 22457888888431 111123445667777888998888776653
No 251
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=88.85 E-value=2.7 Score=46.88 Aligned_cols=122 Identities=18% Similarity=0.265 Sum_probs=69.0
Q ss_pred CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCch---HHHHHHHHHHhh-CCCceEEEec
Q 008516 13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQS---KAKVARDAVLKF-RPQMSITAHH 88 (563)
Q Consensus 13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~---Ka~va~~~l~~~-np~v~I~~~~ 88 (563)
.+|-+||+|..|..+++||+..|+ ++++.|.+.=....+... ...-|.. -+...++.+..+ .|++-+....
T Consensus 7 ~~IG~IGLG~MG~~mA~nL~~~G~-~V~V~NRt~~k~~~l~~~----~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~ 81 (493)
T PLN02350 7 SRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVER----AKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVK 81 (493)
T ss_pred CCEEEEeeHHHHHHHHHHHHhCCC-eEEEECCCHHHHHHHHHh----hhhcCCcccccCCCHHHHHhcCCCCCEEEEECC
Confidence 479999999999999999999998 688877542211111100 0000211 122233444332 2444444332
Q ss_pred cCC-CCCcch--HhhcccccEEEEccC-CHHHHHHHHHHHHhcCCCEEEeccccc
Q 008516 89 ANV-KDPKFN--VEFFKQFNVVLNGLD-NLDARRHVNRLCLAADVPLVESGTTGF 139 (563)
Q Consensus 89 ~~i-~~~~~~--~~~~~~~dvVi~alD-n~~ar~~in~~c~~~~~pli~~gt~G~ 139 (563)
..- .+..++ ...++.=|+||++.- +++.-+.+.+.+.+.++.+++++..|.
T Consensus 82 ~~~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG 136 (493)
T PLN02350 82 AGAPVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGG 136 (493)
T ss_pred CcHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCC
Confidence 221 001110 122445688998643 355555557788888999999998874
No 252
>PLN02650 dihydroflavonol-4-reductase
Probab=88.81 E-value=4.5 Score=42.52 Aligned_cols=33 Identities=24% Similarity=0.334 Sum_probs=26.9
Q ss_pred cCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516 11 KGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM 44 (563)
Q Consensus 11 ~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~ 44 (563)
.+++|+|.| +|.||+.+++.|+..|. ++++++.
T Consensus 4 ~~k~iLVTGatGfIGs~l~~~L~~~G~-~V~~~~r 37 (351)
T PLN02650 4 QKETVCVTGASGFIGSWLVMRLLERGY-TVRATVR 37 (351)
T ss_pred CCCEEEEeCCcHHHHHHHHHHHHHCCC-EEEEEEc
Confidence 356899998 59999999999999987 5665553
No 253
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=88.80 E-value=1 Score=49.97 Aligned_cols=119 Identities=17% Similarity=0.271 Sum_probs=67.1
Q ss_pred cEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCc--hHHHHHHHHHHhh-CCCceEEEecc-
Q 008516 14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQ--SKAKVARDAVLKF-RPQMSITAHHA- 89 (563)
Q Consensus 14 ~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk--~Ka~va~~~l~~~-np~v~I~~~~~- 89 (563)
.|.+||+|..|..++.||+..|+ ++++.|.+.-....+..++ ..|+ .-+...++.+..+ .|++-+.....
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~-~V~v~drt~~~~~~l~~~~-----~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~ 74 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGF-TVSVYNRTPEKTDEFLAEH-----AKGKKIVGAYSIEEFVQSLERPRKIMLMVKAG 74 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHhhc-----cCCCCceecCCHHHHHhhcCCCCEEEEECCCc
Confidence 47899999999999999999998 6888886543332222110 0010 0111223333333 35544444332
Q ss_pred CCCCCcc--hHhhcccccEEEEccC-CHH-HHHHHHHHHHhcCCCEEEeccccc
Q 008516 90 NVKDPKF--NVEFFKQFNVVLNGLD-NLD-ARRHVNRLCLAADVPLVESGTTGF 139 (563)
Q Consensus 90 ~i~~~~~--~~~~~~~~dvVi~alD-n~~-ar~~in~~c~~~~~pli~~gt~G~ 139 (563)
...+... -...++.=|+||++.. ++. +++. .+.+...++.++++++.|-
T Consensus 75 ~~v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~-~~~l~~~gi~fvdapVsGG 127 (467)
T TIGR00873 75 APVDAVINQLLPLLEKGDIIIDGGNSHYPDTERR-YKELKAKGILFVGSGVSGG 127 (467)
T ss_pred HHHHHHHHHHHhhCCCCCEEEECCCcCHHHHHHH-HHHHHhcCCEEEcCCCCCC
Confidence 1111111 0123455689999753 333 3444 4557788999999998873
No 254
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=88.73 E-value=1.9 Score=45.89 Aligned_cols=89 Identities=18% Similarity=0.267 Sum_probs=52.4
Q ss_pred cEEEECCcHHHHHHHHHHHHhC------C-CeEEEEeCCccCcccCccccCCCCCCC-CchHHHHHHHHHHhh--C----
Q 008516 14 KVLMVGAGGIGCELLKTLALSG------F-QDIHIIDMDTIEVSNLNRQFLFRQSHV-GQSKAKVARDAVLKF--R---- 79 (563)
Q Consensus 14 ~VlvvGaGgiG~ellknLal~G------v-g~I~iiD~D~Ve~sNLnRqfLf~~~di-Gk~Ka~va~~~l~~~--n---- 79 (563)
||.|+|+|+.|+.++..|+..| | .++++...+ +++ +.. ..+.+.+- |
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~---------------~~~~~~~----~~~~in~~~~n~~yl 61 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFE---------------EEIEGRN----LTEIINTTHENVKYL 61 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEec---------------cccCCHH----HHHHHHhcCCCcccc
Confidence 6899999999999999999988 2 356665431 112 111 12222211 1
Q ss_pred CCceEEEeccCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHH
Q 008516 80 PQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLC 124 (563)
Q Consensus 80 p~v~I~~~~~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c 124 (563)
|+++. ..++.-.....+.+++.|+|+.++-+...|..+.++.
T Consensus 62 pgi~L---p~~i~at~dl~eal~~ADiIIlAVPs~~i~~vl~~l~ 103 (342)
T TIGR03376 62 PGIKL---PANLVAVPDLVEAAKGADILVFVIPHQFLEGICKQLK 103 (342)
T ss_pred CCCcC---CCCeEEECCHHHHHhcCCEEEEECChHHHHHHHHHHH
Confidence 22211 1111100112456789999999998877777776663
No 255
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=88.72 E-value=3.2 Score=42.37 Aligned_cols=88 Identities=18% Similarity=0.127 Sum_probs=52.0
Q ss_pred CcEEEECCcHHHHHHHHHHHHhC--CCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccC
Q 008516 13 AKVLMVGAGGIGCELLKTLALSG--FQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN 90 (563)
Q Consensus 13 ~~VlvvGaGgiG~ellknLal~G--vg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~ 90 (563)
.||.|||+|.+|..+++.|...+ +.-+.++|.+ ..|++.+++ ... +. .+.
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~-------------------~~~a~~~a~---~~~--~~--~~~-- 53 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRN-------------------LEKAENLAS---KTG--AK--ACL-- 53 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCC-------------------HHHHHHHHH---hcC--Ce--eEC--
Confidence 48999999999999999998764 3233344432 223333322 211 11 111
Q ss_pred CCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEe
Q 008516 91 VKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVES 134 (563)
Q Consensus 91 i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~ 134 (563)
. ..+++.+.|+|+.|+... +...+-..+.++++.++..
T Consensus 54 ----~-~~ell~~~DvVvi~a~~~-~~~~~~~~al~~Gk~Vvv~ 91 (265)
T PRK13304 54 ----S-IDELVEDVDLVVECASVN-AVEEVVPKSLENGKDVIIM 91 (265)
T ss_pred ----C-HHHHhcCCCEEEEcCChH-HHHHHHHHHHHcCCCEEEE
Confidence 1 134457899999987643 3333444556678877664
No 256
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=88.70 E-value=1.7 Score=45.10 Aligned_cols=31 Identities=32% Similarity=0.668 Sum_probs=28.2
Q ss_pred EEEECCcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516 15 VLMVGAGGIGCELLKTLALSGFQDIHIIDMD 45 (563)
Q Consensus 15 VlvvGaGgiG~ellknLal~Gvg~I~iiD~D 45 (563)
|.|||+|.+|.-++-.|+..|.++++++|.+
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~ 31 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIV 31 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCC
Confidence 5799999999999999999887699999976
No 257
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=88.70 E-value=4.7 Score=41.45 Aligned_cols=79 Identities=19% Similarity=0.221 Sum_probs=47.3
Q ss_pred CCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhC-CCceEEEecc
Q 008516 12 GAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFR-PQMSITAHHA 89 (563)
Q Consensus 12 ~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~n-p~v~I~~~~~ 89 (563)
+++|+|.| +|.||+.+++.|...|. ++++++.+.-.. + +. ..+.... ..-+++.+..
T Consensus 4 ~~~ilVtGatGfIG~~l~~~L~~~g~-~V~~~~r~~~~~--------------~--~~----~~~~~~~~~~~~~~~~~~ 62 (322)
T PLN02662 4 GKVVCVTGASGYIASWLVKLLLQRGY-TVKATVRDPNDP--------------K--KT----EHLLALDGAKERLHLFKA 62 (322)
T ss_pred CCEEEEECChHHHHHHHHHHHHHCCC-EEEEEEcCCCch--------------h--hH----HHHHhccCCCCceEEEec
Confidence 57899999 69999999999999987 566655432110 0 00 0111110 0124555666
Q ss_pred CCCCCcchHhhcccccEEEEcc
Q 008516 90 NVKDPKFNVEFFKQFNVVLNGL 111 (563)
Q Consensus 90 ~i~~~~~~~~~~~~~dvVi~al 111 (563)
++.+...-...++++|+||.+.
T Consensus 63 Dl~~~~~~~~~~~~~d~Vih~A 84 (322)
T PLN02662 63 NLLEEGSFDSVVDGCEGVFHTA 84 (322)
T ss_pred cccCcchHHHHHcCCCEEEEeC
Confidence 6654433345677889888853
No 258
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=88.63 E-value=0.59 Score=46.45 Aligned_cols=38 Identities=32% Similarity=0.460 Sum_probs=34.5
Q ss_pred HHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCc
Q 008516 9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT 46 (563)
Q Consensus 9 kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~ 46 (563)
.|+.++|+|.|.|.+|..+++.|...|...+.+.|.+-
T Consensus 20 ~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g 57 (217)
T cd05211 20 SLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDG 57 (217)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence 46789999999999999999999999998999998654
No 259
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=88.61 E-value=1.9 Score=45.82 Aligned_cols=98 Identities=24% Similarity=0.276 Sum_probs=57.9
Q ss_pred CcEEEECC-cHHHHHHHHHHHHhCCCeEE-EEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccC
Q 008516 13 AKVLMVGA-GGIGCELLKTLALSGFQDIH-IIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN 90 (563)
Q Consensus 13 ~~VlvvGa-GgiG~ellknLal~Gvg~I~-iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~ 90 (563)
.||.|+|+ |.+|.++++.|...-.-++. +++.+. ..|+.= .+..|.+.... ...
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~---------------sagk~~--------~~~~~~l~~~~-~~~ 56 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRE---------------SAGKPV--------SEVHPHLRGLV-DLN 56 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccch---------------hcCCCh--------HHhCccccccC-Cce
Confidence 37999998 99999999999966333444 444331 123221 11122211100 001
Q ss_pred CCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEecc
Q 008516 91 VKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGT 136 (563)
Q Consensus 91 i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt 136 (563)
+.+. ...++.++.|+|+.|+.+..++.++.++ ...++.+||.++
T Consensus 57 ~~~~-~~~~~~~~~DvVf~alP~~~s~~~~~~~-~~~G~~VIDlS~ 100 (346)
T TIGR01850 57 LEPI-DEEEIAEDADVVFLALPHGVSAELAPEL-LAAGVKVIDLSA 100 (346)
T ss_pred eecC-CHHHhhcCCCEEEECCCchHHHHHHHHH-HhCCCEEEeCCh
Confidence 1111 1134446899999999998777777665 457888888764
No 260
>PRK12367 short chain dehydrogenase; Provisional
Probab=88.54 E-value=0.9 Score=45.65 Aligned_cols=42 Identities=19% Similarity=0.317 Sum_probs=35.9
Q ss_pred CHHHHHHHcCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516 3 SERQLEAIKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMD 45 (563)
Q Consensus 3 ~~~~q~kL~~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~D 45 (563)
..-.|+++++++++|.|+ ||||.++++.|+..|. ++.++|.+
T Consensus 5 ~~~~~~~l~~k~~lITGas~gIG~ala~~l~~~G~-~Vi~~~r~ 47 (245)
T PRK12367 5 DPMAQSTWQGKRIGITGASGALGKALTKAFRAKGA-KVIGLTHS 47 (245)
T ss_pred chhhHHhhCCCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence 456799999999999985 8999999999999997 67777654
No 261
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=88.41 E-value=2.3 Score=43.76 Aligned_cols=32 Identities=28% Similarity=0.483 Sum_probs=27.3
Q ss_pred CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516 13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD 45 (563)
Q Consensus 13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D 45 (563)
.+|.|||+|.+|..++++|+..|. ++.+.|.+
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~-~v~~~d~~ 34 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGY-SLVVYDRN 34 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCC-eEEEEcCC
Confidence 479999999999999999999996 46676643
No 262
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=88.40 E-value=2.9 Score=43.83 Aligned_cols=32 Identities=25% Similarity=0.351 Sum_probs=26.3
Q ss_pred CcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516 13 AKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMD 45 (563)
Q Consensus 13 ~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~D 45 (563)
++|+|.|+ |.||+.+++.|...|. +++.+|..
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~G~-~V~~~~r~ 33 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEKGY-EVHGLIRR 33 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHCCC-EEEEEecC
Confidence 47899985 8899999999999997 57776643
No 263
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=88.37 E-value=0.58 Score=50.32 Aligned_cols=57 Identities=25% Similarity=0.336 Sum_probs=36.3
Q ss_pred cchhhHHHHHHHHHHHHHHHHHhcCcccc--ceeeecccccccccccccCCCCCCCCcccCCC
Q 008516 375 HAVATTNAIIAGLIVIEAIKVLLKDTDKY--RMTYCLEHITKKMLLMPVEPYEPNKSCYVCSE 435 (563)
Q Consensus 375 PAIATTnAiVAGl~vlE~~K~l~~~~~~~--r~~f~~~~~~~~~~~~p~~~~~pn~~C~vC~~ 435 (563)
+.+.+|+++||++++.|++|+|.|..+.. |-..++..... +... .-+++|.|.+|+.
T Consensus 300 gv~g~~~~~~~~~~a~e~~k~l~g~~~~~~~~~~~~d~~~~~---~~~~-~~~~~~~C~~C~~ 358 (376)
T PRK08762 300 GVLGVLPGVIGLLQATEAIKLLLGIGDPLTGRLLTFDALAMR---FREL-RLPPDPHCPVCAP 358 (376)
T ss_pred CcchhhHHHHHHHHHHHHHHHHhCCCCCCCCeEEEEECCCCe---EEEE-eccCCCCCCCCCC
Confidence 35677999999999999999999864332 22222221111 1111 2246899999985
No 264
>PRK07035 short chain dehydrogenase; Provisional
Probab=88.26 E-value=2.6 Score=41.74 Aligned_cols=36 Identities=28% Similarity=0.446 Sum_probs=30.5
Q ss_pred HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516 9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD 45 (563)
Q Consensus 9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D 45 (563)
.+++++|+|.| .|+||.++++.|+..|. ++.++|.+
T Consensus 5 ~l~~k~vlItGas~gIG~~l~~~l~~~G~-~Vi~~~r~ 41 (252)
T PRK07035 5 DLTGKIALVTGASRGIGEAIAKLLAQQGA-HVIVSSRK 41 (252)
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 36778899998 78999999999999997 78888753
No 265
>PRK12744 short chain dehydrogenase; Provisional
Probab=88.25 E-value=2.1 Score=42.57 Aligned_cols=32 Identities=34% Similarity=0.572 Sum_probs=26.5
Q ss_pred HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEE
Q 008516 10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHI 41 (563)
Q Consensus 10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~i 41 (563)
|++++++|.| .||||.++++.|+..|...+.+
T Consensus 6 l~~k~vlItGa~~gIG~~~a~~l~~~G~~vv~i 38 (257)
T PRK12744 6 LKGKVVLIAGGAKNLGGLIARDLAAQGAKAVAI 38 (257)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCCcEEEE
Confidence 5678899998 7899999999999999863433
No 266
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=88.20 E-value=1.7 Score=49.76 Aligned_cols=89 Identities=12% Similarity=0.217 Sum_probs=61.9
Q ss_pred CCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccCC
Q 008516 12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV 91 (563)
Q Consensus 12 ~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~i 91 (563)
+.+|+|+|.|.+|..+++.|...|. +++++|.|.- +++. +++. ....+.++.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~-------------------~v~~----~~~~----g~~v~~GDa 451 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKM-RITVLERDIS-------------------AVNL----MRKY----GYKVYYGDA 451 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCC-CEEEEECCHH-------------------HHHH----HHhC----CCeEEEeeC
Confidence 4689999999999999999999998 5899997652 2222 2221 223455555
Q ss_pred CCCc-chHhhcccccEEEEccCCHHHHHHHHHHHHhcC
Q 008516 92 KDPK-FNVEFFKQFNVVLNGLDNLDARRHVNRLCLAAD 128 (563)
Q Consensus 92 ~~~~-~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~ 128 (563)
++.. ....-.+++|.|+.++||.+.-..+-..+++.+
T Consensus 452 t~~~~L~~agi~~A~~vv~~~~d~~~n~~i~~~~r~~~ 489 (601)
T PRK03659 452 TQLELLRAAGAEKAEAIVITCNEPEDTMKIVELCQQHF 489 (601)
T ss_pred CCHHHHHhcCCccCCEEEEEeCCHHHHHHHHHHHHHHC
Confidence 4321 122336789999999999888777777777653
No 267
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=88.17 E-value=0.66 Score=47.66 Aligned_cols=32 Identities=31% Similarity=0.541 Sum_probs=28.3
Q ss_pred CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516 13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD 45 (563)
Q Consensus 13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D 45 (563)
.+|+|+|+|++|+.++..|+..|. +++++|.+
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~-~V~~~~r~ 32 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGH-DVTLVARR 32 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC-eEEEEECC
Confidence 379999999999999999999994 78998853
No 268
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=88.13 E-value=2 Score=45.11 Aligned_cols=35 Identities=40% Similarity=0.491 Sum_probs=31.2
Q ss_pred cCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516 11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD 45 (563)
Q Consensus 11 ~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D 45 (563)
..++|||.|||.||--.....-.+|.++|.++|..
T Consensus 169 ~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~ 203 (354)
T KOG0024|consen 169 KGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLV 203 (354)
T ss_pred cCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecC
Confidence 36799999999999999999999999999999843
No 269
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=88.11 E-value=2.2 Score=45.31 Aligned_cols=92 Identities=14% Similarity=0.188 Sum_probs=59.6
Q ss_pred cCCcEEEECC-cHHHHHHHHHHHH--hCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEe
Q 008516 11 KGAKVLMVGA-GGIGCELLKTLAL--SGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH 87 (563)
Q Consensus 11 ~~~~VlvvGa-GgiG~ellknLal--~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~ 87 (563)
++.+|.|||+ |-+|.|+++.|.. ..+.+|..+-.+ +..|+.=. +. ..++.++
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~---------------~saG~~~~------~~--~~~~~v~-- 57 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASE---------------ESAGETLR------FG--GKSVTVQ-- 57 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEcc---------------CcCCceEE------EC--CcceEEE--
Confidence 4678999996 8899999999998 456666665322 23333211 00 1123333
Q ss_pred ccCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEec
Q 008516 88 HANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESG 135 (563)
Q Consensus 88 ~~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~g 135 (563)
.+ +..-|+++|+|+.|+.+-.++.+..+. ...+.++||-+
T Consensus 58 --~~-----~~~~~~~~Dvvf~a~p~~~s~~~~~~~-~~~g~~VIDlS 97 (336)
T PRK08040 58 --DA-----AEFDWSQAQLAFFVAGREASAAYAEEA-TNAGCLVIDSS 97 (336)
T ss_pred --eC-----chhhccCCCEEEECCCHHHHHHHHHHH-HHCCCEEEECC
Confidence 12 112347899999999987777776665 56788899865
No 270
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=88.09 E-value=1.2 Score=46.18 Aligned_cols=31 Identities=23% Similarity=0.460 Sum_probs=27.4
Q ss_pred cEEEECCcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516 14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMD 45 (563)
Q Consensus 14 ~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D 45 (563)
+|.+||+|.+|..++++|+..|. .+++.|.+
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g~-~v~v~dr~ 32 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDGH-EVVGYDVN 32 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCCC-EEEEEECC
Confidence 69999999999999999999996 57787754
No 271
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=88.07 E-value=2 Score=36.74 Aligned_cols=92 Identities=22% Similarity=0.382 Sum_probs=54.7
Q ss_pred cCCcEEEECCcHHHHHHHH-HHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEecc
Q 008516 11 KGAKVLMVGAGGIGCELLK-TLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA 89 (563)
Q Consensus 11 ~~~~VlvvGaGgiG~ellk-nLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~ 89 (563)
++.+|+|+|+|++|..++. .+...|++-..+.|.|. +.+|+.- . ++.|-.
T Consensus 2 k~~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~--------------~~~G~~i-----------~-gipV~~--- 52 (96)
T PF02629_consen 2 KKTNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDP--------------EKIGKEI-----------G-GIPVYG--- 52 (96)
T ss_dssp TTEEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECT--------------TTTTSEE-----------T-TEEEES---
T ss_pred CCCeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCC--------------CccCcEE-----------C-CEEeec---
Confidence 3568999999999998864 44577888888888332 2333211 0 222221
Q ss_pred CCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEecc
Q 008516 90 NVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGT 136 (563)
Q Consensus 90 ~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt 136 (563)
.+. .-.++. +.|+.+.++....++..+.+++. .++..|..-+
T Consensus 53 ~~~---~l~~~~-~i~iaii~VP~~~a~~~~~~~~~-~gIk~i~nft 94 (96)
T PF02629_consen 53 SMD---ELEEFI-EIDIAIITVPAEAAQEVADELVE-AGIKGIVNFT 94 (96)
T ss_dssp SHH---HHHHHC-TTSEEEEES-HHHHHHHHHHHHH-TT-SEEEEES
T ss_pred cHH---Hhhhhh-CCCEEEEEcCHHHHHHHHHHHHH-cCCCEEEEeC
Confidence 110 112333 48999999877677776666654 7777665543
No 272
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=88.06 E-value=1.2 Score=46.87 Aligned_cols=31 Identities=35% Similarity=0.602 Sum_probs=27.6
Q ss_pred CcEEEECC-cHHHHHHHHHHHHhCC-C-----eEEEEe
Q 008516 13 AKVLMVGA-GGIGCELLKTLALSGF-Q-----DIHIID 43 (563)
Q Consensus 13 ~~VlvvGa-GgiG~ellknLal~Gv-g-----~I~iiD 43 (563)
.||.|||+ |.+|+.++-.|+..|+ + +|.|+|
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~D 41 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLD 41 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEe
Confidence 48999998 9999999999999987 4 688887
No 273
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=88.06 E-value=1.2 Score=46.79 Aligned_cols=33 Identities=36% Similarity=0.581 Sum_probs=29.4
Q ss_pred CcEEEECC-cHHHHHHHHHHHHhCC-CeEEEEeCC
Q 008516 13 AKVLMVGA-GGIGCELLKTLALSGF-QDIHIIDMD 45 (563)
Q Consensus 13 ~~VlvvGa-GgiG~ellknLal~Gv-g~I~iiD~D 45 (563)
.||.|||+ |.+|+.++-.|+..|+ .+|.|+|-.
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~ 35 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV 35 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC
Confidence 38999999 9999999999999997 579999954
No 274
>PRK06949 short chain dehydrogenase; Provisional
Probab=88.02 E-value=2.3 Score=42.16 Aligned_cols=34 Identities=26% Similarity=0.544 Sum_probs=28.8
Q ss_pred HcCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeC
Q 008516 10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDM 44 (563)
Q Consensus 10 L~~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~ 44 (563)
+.+++|+|.|+ |+||..+++.|+..|. ++++++.
T Consensus 7 ~~~k~ilItGasg~IG~~~a~~l~~~G~-~Vi~~~r 41 (258)
T PRK06949 7 LEGKVALVTGASSGLGARFAQVLAQAGA-KVVLASR 41 (258)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence 56789999985 9999999999999998 5777654
No 275
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=88.00 E-value=1.9 Score=44.56 Aligned_cols=34 Identities=24% Similarity=0.238 Sum_probs=29.1
Q ss_pred cCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516 11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM 44 (563)
Q Consensus 11 ~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~ 44 (563)
+..+|+|+|+|++|...+..+..+|...+.++|.
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~ 177 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWET 177 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCC
Confidence 4568999999999999998888899988877753
No 276
>PRK06196 oxidoreductase; Provisional
Probab=87.98 E-value=1.7 Score=44.98 Aligned_cols=36 Identities=22% Similarity=0.458 Sum_probs=29.4
Q ss_pred HHcCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516 9 AIKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMD 45 (563)
Q Consensus 9 kL~~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~D 45 (563)
.+.+++|+|.|+ ||||.++++.|+..|. ++.+++.+
T Consensus 23 ~l~~k~vlITGasggIG~~~a~~L~~~G~-~Vv~~~R~ 59 (315)
T PRK06196 23 DLSGKTAIVTGGYSGLGLETTRALAQAGA-HVIVPARR 59 (315)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 356778999985 8999999999999997 57777643
No 277
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=87.97 E-value=1.4 Score=51.59 Aligned_cols=162 Identities=13% Similarity=0.099 Sum_probs=87.5
Q ss_pred CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCccc----CccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEec
Q 008516 13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSN----LNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH 88 (563)
Q Consensus 13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sN----LnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~ 88 (563)
.+|.|||+|.+|+.++-.++..|+ .++++|.+.=.... +.+. +=..-.-|+...+.+.+.+.++. ...
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~i~------~~~ 385 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGT-PIVMKDINQHSLDLGLTEAAKL-LNKQVERGRITPAKMAGVLNGIT------PTL 385 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHH-HHHHHHcCCCChhhHHHHHhCeE------EeC
Confidence 469999999999999999999998 68999865432211 1110 00000112222222222222221 111
Q ss_pred cCCCCCcchHhhcccccEEEEcc-CCHHHHHHHHHHHHhcCC--CEEEecccccee-eEEEEeCCCCccccccCCCCCCC
Q 008516 89 ANVKDPKFNVEFFKQFNVVLNGL-DNLDARRHVNRLCLAADV--PLVESGTTGFLG-QVTVHVKGKTECYECQPKPAPKT 164 (563)
Q Consensus 89 ~~i~~~~~~~~~~~~~dvVi~al-Dn~~ar~~in~~c~~~~~--pli~~gt~G~~G-~v~v~~~~~t~Cy~C~~~~~~~~ 164 (563)
+.+-++++|+||.|. .+.+..+.+-+..-..-. .++.+.|.+..- .+.-..+...-+..-+.-.++..
T Consensus 386 --------~~~~~~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~l~i~~ia~~~~~p~r~ig~Hff~P~~~ 457 (714)
T TIGR02437 386 --------SYAGFDNVDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTSTISISLLAKALKRPENFCGMHFFNPVHR 457 (714)
T ss_pred --------CHHHhcCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEecCCCccc
Confidence 123368999999985 566666665444433322 356666655321 00001111222333333344455
Q ss_pred CCceeeccCCCCchhHHHHHHHHHHHH
Q 008516 165 YPVCTITSTPSKFVHCIVWAKDLLFAK 191 (563)
Q Consensus 165 ~p~cti~~~p~~~~hci~~a~~~lf~~ 191 (563)
-|.-.|...+.+...++..+.+ +...
T Consensus 458 ~~lvEvv~g~~Ts~~~~~~~~~-~~~~ 483 (714)
T TIGR02437 458 MPLVEVIRGEKSSDETIATVVA-YASK 483 (714)
T ss_pred CceEeecCCCCCCHHHHHHHHH-HHHH
Confidence 6777777777788888888887 3443
No 278
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=87.92 E-value=2.3 Score=43.73 Aligned_cols=91 Identities=16% Similarity=0.122 Sum_probs=53.3
Q ss_pred HcCCcEEEECCcHHHHHHHHHHHHh--CCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEe
Q 008516 10 IKGAKVLMVGAGGIGCELLKTLALS--GFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH 87 (563)
Q Consensus 10 L~~~~VlvvGaGgiG~ellknLal~--Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~ 87 (563)
+...||.|||+|.+|..++++|... |+.-..+.|.+ ..|++.+++ +.+ ....
T Consensus 4 m~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~-------------------~~~a~~~a~---~~g-~~~~--- 57 (271)
T PRK13302 4 RPELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRD-------------------PQRHADFIW---GLR-RPPP--- 57 (271)
T ss_pred CCeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCC-------------------HHHHHHHHH---hcC-CCcc---
Confidence 3457899999999999999999864 43222233321 123333222 221 0000
Q ss_pred ccCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEE
Q 008516 88 HANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVE 133 (563)
Q Consensus 88 ~~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~ 133 (563)
.+ . .++++.+.|+|+.++.+...+ .+...+.+++++++.
T Consensus 58 ---~~--~-~eell~~~D~Vvi~tp~~~h~-e~~~~aL~aGk~Vi~ 96 (271)
T PRK13302 58 ---VV--P-LDQLATHADIVVEAAPASVLR-AIVEPVLAAGKKAIV 96 (271)
T ss_pred ---cC--C-HHHHhcCCCEEEECCCcHHHH-HHHHHHHHcCCcEEE
Confidence 01 1 234567789999998765444 444666778888764
No 279
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=87.90 E-value=2.5 Score=43.73 Aligned_cols=86 Identities=23% Similarity=0.329 Sum_probs=58.0
Q ss_pred HHHHHHcCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCce
Q 008516 5 RQLEAIKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMS 83 (563)
Q Consensus 5 ~~q~kL~~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~ 83 (563)
...++++++.|+|-|| .|||-++|+.|+..|..-+.++= + ..+-+..++.+++.-|.-+
T Consensus 5 ~~~e~~~~kvVvITGASsGIG~~lA~~la~~G~~l~lvar---------------~-----~rrl~~v~~~l~~~~~~~~ 64 (282)
T KOG1205|consen 5 LFMERLAGKVVLITGASSGIGEALAYELAKRGAKLVLVAR---------------R-----ARRLERVAEELRKLGSLEK 64 (282)
T ss_pred ccHHHhCCCEEEEeCCCcHHHHHHHHHHHhCCCceEEeeh---------------h-----hhhHHHHHHHHHHhCCcCc
Confidence 4567899999999995 79999999999999997555430 1 1223444455554444337
Q ss_pred EEEeccCCCCCcchH-------hhcccccEEEEc
Q 008516 84 ITAHHANVKDPKFNV-------EFFKQFNVVLNG 110 (563)
Q Consensus 84 I~~~~~~i~~~~~~~-------~~~~~~dvVi~a 110 (563)
+..+..++++...-. .-|.+.|++||.
T Consensus 65 v~~~~~Dvs~~~~~~~~~~~~~~~fg~vDvLVNN 98 (282)
T KOG1205|consen 65 VLVLQLDVSDEESVKKFVEWAIRHFGRVDVLVNN 98 (282)
T ss_pred cEEEeCccCCHHHHHHHHHHHHHhcCCCCEEEec
Confidence 888888886543333 235677888873
No 280
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=87.89 E-value=0.49 Score=48.08 Aligned_cols=107 Identities=12% Similarity=0.121 Sum_probs=64.6
Q ss_pred HHHcCCcEEEECCcHHHHHHHHHHHHhCCC----------eEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHh
Q 008516 8 EAIKGAKVLMVGAGGIGCELLKTLALSGFQ----------DIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLK 77 (563)
Q Consensus 8 ~kL~~~~VlvvGaGgiG~ellknLal~Gvg----------~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~ 77 (563)
.+|.+.||+++|+|+-|.-+++.|...|+. +|.++|..-+=..+- .+.-..|... ++..
T Consensus 21 ~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r--------~~l~~~~~~~-~~~~-- 89 (254)
T cd00762 21 KKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNR--------KETCPNEYHL-ARFA-- 89 (254)
T ss_pred CChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCC--------CccCHHHHHH-HHHc--
Confidence 368899999999999999999999999987 899999775422111 1122222221 1111
Q ss_pred hCCCceEEEeccCCCCCcchHhhcc--cccEEEEccC--CHHHHHHHHHHHHhcCCCEEEecc
Q 008516 78 FRPQMSITAHHANVKDPKFNVEFFK--QFNVVLNGLD--NLDARRHVNRLCLAADVPLVESGT 136 (563)
Q Consensus 78 ~np~v~I~~~~~~i~~~~~~~~~~~--~~dvVi~alD--n~~ar~~in~~c~~~~~pli~~gt 136 (563)
|+.-. .. .-.+.++ +.|++|-... +.=.+..+..|+.....|+|.+-+
T Consensus 90 -~~~~~----~~------~L~eav~~~kptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLS 141 (254)
T cd00762 90 -NPERE----SG------DLEDAVEAAKPDFLIGVSRVGGAFTPEVIRAXAEINERPVIFALS 141 (254)
T ss_pred -Ccccc----cC------CHHHHHHhhCCCEEEEeCCCCCCCCHHHHHHHhhcCCCCEEEECC
Confidence 11100 00 1134455 6677766432 223456677777777788887654
No 281
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=87.85 E-value=1.9 Score=45.57 Aligned_cols=89 Identities=20% Similarity=0.264 Sum_probs=57.0
Q ss_pred HHcCCcEEEECCcHHHHHHHHHHHHhCCC-eEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEe
Q 008516 9 AIKGAKVLMVGAGGIGCELLKTLALSGFQ-DIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH 87 (563)
Q Consensus 9 kL~~~~VlvvGaGgiG~ellknLal~Gvg-~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~ 87 (563)
.+.++++.|+|.|.||..+++.+. ||| +|...|...- ++.+. ..+ ...
T Consensus 143 ~l~gktvGIiG~GrIG~avA~r~~--~Fgm~v~y~~~~~~------------------~~~~~------~~~----~~y- 191 (324)
T COG1052 143 DLRGKTLGIIGLGRIGQAVARRLK--GFGMKVLYYDRSPN------------------PEAEK------ELG----ARY- 191 (324)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHh--cCCCEEEEECCCCC------------------hHHHh------hcC----cee-
Confidence 478999999999999999999999 776 4444432110 11110 000 000
Q ss_pred ccCCCCCcchHhhcccccEEEE-ccCCHHHHHHHHHHHHhcCC---CEEEec
Q 008516 88 HANVKDPKFNVEFFKQFNVVLN-GLDNLDARRHVNRLCLAADV---PLVESG 135 (563)
Q Consensus 88 ~~~i~~~~~~~~~~~~~dvVi~-alDn~~ar~~in~~c~~~~~---pli~~g 135 (563)
+ . -++.+++.|+|+. +-.+.+.+..||+.-.+.-+ -+|+.+
T Consensus 192 ---~---~-l~ell~~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNta 236 (324)
T COG1052 192 ---V---D-LDELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTA 236 (324)
T ss_pred ---c---c-HHHHHHhCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEECC
Confidence 1 1 3678899998866 55778889999887665433 355554
No 282
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=87.83 E-value=2.7 Score=44.51 Aligned_cols=91 Identities=18% Similarity=0.212 Sum_probs=51.2
Q ss_pred CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccCCC
Q 008516 13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVK 92 (563)
Q Consensus 13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~i~ 92 (563)
.||.|+|+|++|+.++..|+..| +++++..+.-....+++.- .+....+.. .++.+. +.+ +
T Consensus 8 mkI~IiGaGa~G~alA~~La~~g--~v~l~~~~~~~~~~i~~~~-~~~~~l~~~---------~~l~~~--i~~-----t 68 (341)
T PRK12439 8 PKVVVLGGGSWGTTVASICARRG--PTLQWVRSAETADDINDNH-RNSRYLGND---------VVLSDT--LRA-----T 68 (341)
T ss_pred CeEEEECCCHHHHHHHHHHHHCC--CEEEEeCCHHHHHHHHhcC-CCcccCCCC---------cccCCC--eEE-----E
Confidence 68999999999999999999998 4555543332221122110 000111100 001111 111 1
Q ss_pred CCcchHhhcccccEEEEccCCHHHHHHHHHHH
Q 008516 93 DPKFNVEFFKQFNVVLNGLDNLDARRHVNRLC 124 (563)
Q Consensus 93 ~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c 124 (563)
. . ..+.++++|+|+.++-....+..+.++.
T Consensus 69 ~-d-~~~a~~~aDlVilavps~~~~~vl~~i~ 98 (341)
T PRK12439 69 T-D-FAEAANCADVVVMGVPSHGFRGVLTELA 98 (341)
T ss_pred C-C-HHHHHhcCCEEEEEeCHHHHHHHHHHHH
Confidence 1 1 1244688999999998777777777664
No 283
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=87.80 E-value=1.7 Score=46.79 Aligned_cols=32 Identities=38% Similarity=0.727 Sum_probs=28.5
Q ss_pred CcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516 13 AKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD 45 (563)
Q Consensus 13 ~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D 45 (563)
.+|.||| +|.+|..+++.|...|. .++++|.+
T Consensus 99 ~~I~IiGG~GlmG~slA~~l~~~G~-~V~~~d~~ 131 (374)
T PRK11199 99 RPVVIVGGKGQLGRLFAKMLTLSGY-QVRILEQD 131 (374)
T ss_pred ceEEEEcCCChhhHHHHHHHHHCCC-eEEEeCCC
Confidence 6799998 99999999999999995 58888864
No 284
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=87.79 E-value=5 Score=42.22 Aligned_cols=32 Identities=28% Similarity=0.401 Sum_probs=26.6
Q ss_pred cCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEe
Q 008516 11 KGAKVLMVG-AGGIGCELLKTLALSGFQDIHIID 43 (563)
Q Consensus 11 ~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD 43 (563)
++++|+|.| +|.||+.+++.|+..|. ++++++
T Consensus 9 ~~~~vLVtG~~GfIG~~l~~~L~~~G~-~V~~~~ 41 (353)
T PLN02896 9 ATGTYCVTGATGYIGSWLVKLLLQRGY-TVHATL 41 (353)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEe
Confidence 467899999 58999999999999996 455554
No 285
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=87.75 E-value=3.5 Score=45.30 Aligned_cols=34 Identities=26% Similarity=0.406 Sum_probs=30.4
Q ss_pred cCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516 11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD 45 (563)
Q Consensus 11 ~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D 45 (563)
...+|+|||+|..|.+.+..|++.|. +++|+|..
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~G~-~V~vie~~ 165 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKAGH-SVTVFEAL 165 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCC-cEEEEecC
Confidence 45689999999999999999999997 69999864
No 286
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=87.67 E-value=2.4 Score=43.82 Aligned_cols=36 Identities=25% Similarity=0.378 Sum_probs=29.6
Q ss_pred HHHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516 8 EAIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM 44 (563)
Q Consensus 8 ~kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~ 44 (563)
..+++++++|.| .||||.++++.|+..|. ++.++|.
T Consensus 8 ~~l~~k~~lVTGas~gIG~~ia~~L~~~Ga-~Vv~~~~ 44 (306)
T PRK07792 8 TDLSGKVAVVTGAAAGLGRAEALGLARLGA-TVVVNDV 44 (306)
T ss_pred cCCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEecC
Confidence 457788999998 57999999999999997 5666653
No 287
>PRK06545 prephenate dehydrogenase; Validated
Probab=87.63 E-value=3.1 Score=44.44 Aligned_cols=93 Identities=24% Similarity=0.300 Sum_probs=54.9
Q ss_pred CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccCCC
Q 008516 13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVK 92 (563)
Q Consensus 13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~i~ 92 (563)
.+|.|||+|.+|..+++.|...|. .++++|.|.- +...+. . ... .+. . ...
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~-~v~i~~~~~~-------------------~~~~~~-a-~~~----~~~--~-~~~ 51 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGP-DVFIIGYDPS-------------------AAQLAR-A-LGF----GVI--D-ELA 51 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCC-CeEEEEeCCC-------------------HHHHHH-H-hcC----CCC--c-ccc
Confidence 379999999999999999999997 5677764321 111111 0 000 100 0 011
Q ss_pred CCcchHhhcccccEEEEccCCHHHHHHHHHHHH---hcCCCEEEecc
Q 008516 93 DPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCL---AADVPLVESGT 136 (563)
Q Consensus 93 ~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~---~~~~pli~~gt 136 (563)
. ...+..+++|+||.|+-....+..+.++.. ..+..+.+.++
T Consensus 52 ~--~~~~~~~~aDlVilavP~~~~~~vl~~l~~~~l~~~~ivtDv~S 96 (359)
T PRK06545 52 A--DLQRAAAEADLIVLAVPVDATAALLAELADLELKPGVIVTDVGS 96 (359)
T ss_pred c--CHHHHhcCCCEEEEeCCHHHHHHHHHHHhhcCCCCCcEEEeCcc
Confidence 0 123457889999999877666666666652 22344445543
No 288
>PRK08265 short chain dehydrogenase; Provisional
Probab=87.51 E-value=1.8 Score=43.42 Aligned_cols=35 Identities=26% Similarity=0.546 Sum_probs=30.0
Q ss_pred HcCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516 10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMD 45 (563)
Q Consensus 10 L~~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~D 45 (563)
+++++++|.|+ ||||.++++.|+..|. ++.++|.+
T Consensus 4 ~~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~ 39 (261)
T PRK08265 4 LAGKVAIVTGGATLIGAAVARALVAAGA-RVAIVDID 39 (261)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence 56789999985 9999999999999997 78887643
No 289
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=87.48 E-value=2.8 Score=43.32 Aligned_cols=80 Identities=18% Similarity=0.165 Sum_probs=46.2
Q ss_pred CCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccC
Q 008516 12 GAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN 90 (563)
Q Consensus 12 ~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~ 90 (563)
+++|+|.| +|+||+.+++.|+..|. ++.+++.|.-.. ..............+++.+..+
T Consensus 5 ~k~vlVtG~~G~IG~~l~~~L~~~G~-~V~~~~r~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~D 64 (325)
T PLN02989 5 GKVVCVTGASGYIASWIVKLLLFRGY-TINATVRDPKDR-------------------KKTDHLLALDGAKERLKLFKAD 64 (325)
T ss_pred CCEEEEECCchHHHHHHHHHHHHCCC-EEEEEEcCCcch-------------------hhHHHHHhccCCCCceEEEeCC
Confidence 46899998 59999999999999997 465554332110 0001111000011245556666
Q ss_pred CCCCcchHhhcccccEEEEcc
Q 008516 91 VKDPKFNVEFFKQFNVVLNGL 111 (563)
Q Consensus 91 i~~~~~~~~~~~~~dvVi~al 111 (563)
+++...-.+++++.|+||.+.
T Consensus 65 ~~d~~~~~~~~~~~d~vih~A 85 (325)
T PLN02989 65 LLDEGSFELAIDGCETVFHTA 85 (325)
T ss_pred CCCchHHHHHHcCCCEEEEeC
Confidence 655433345677788888753
No 290
>PRK06125 short chain dehydrogenase; Provisional
Probab=87.44 E-value=2.6 Score=42.05 Aligned_cols=34 Identities=32% Similarity=0.672 Sum_probs=29.5
Q ss_pred HcCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeC
Q 008516 10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDM 44 (563)
Q Consensus 10 L~~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~ 44 (563)
+.+++++|.|+ ||+|.++++.|+..|. ++.++|.
T Consensus 5 ~~~k~vlItG~~~giG~~ia~~l~~~G~-~V~~~~r 39 (259)
T PRK06125 5 LAGKRVLITGASKGIGAAAAEAFAAEGC-HLHLVAR 39 (259)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeC
Confidence 56788999996 7999999999999998 7888764
No 291
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=87.40 E-value=3 Score=42.78 Aligned_cols=81 Identities=12% Similarity=0.194 Sum_probs=50.4
Q ss_pred CcEEEECCcHHHHHHHHHHHHhCC---CeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEecc
Q 008516 13 AKVLMVGAGGIGCELLKTLALSGF---QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA 89 (563)
Q Consensus 13 ~~VlvvGaGgiG~ellknLal~Gv---g~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~ 89 (563)
.+|.|||+|.+|..+++.|...|. .++.++|.+. ..|.+. +....+.+.+.
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~------------------~~~~~~----l~~~~~~~~~~---- 55 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSK------------------NEHFNQ----LYDKYPTVELA---- 55 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCc------------------HHHHHH----HHHHcCCeEEe----
Confidence 369999999999999999999983 4577665421 011111 12222222211
Q ss_pred CCCCCcchHhhcccccEEEEccCCHHHHHHHHHHH
Q 008516 90 NVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLC 124 (563)
Q Consensus 90 ~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c 124 (563)
. ...+..+++|+||.|+-....+..+.++.
T Consensus 56 ---~--~~~e~~~~aDvVilavpp~~~~~vl~~l~ 85 (277)
T PRK06928 56 ---D--NEAEIFTKCDHSFICVPPLAVLPLLKDCA 85 (277)
T ss_pred ---C--CHHHHHhhCCEEEEecCHHHHHHHHHHHH
Confidence 1 12345678999999988666666666553
No 292
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=87.36 E-value=2.7 Score=41.84 Aligned_cols=37 Identities=22% Similarity=0.433 Sum_probs=31.0
Q ss_pred HHHHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516 7 LEAIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM 44 (563)
Q Consensus 7 q~kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~ 44 (563)
..++.+++++|.| .|+||..+++.|+..|. ++.++|.
T Consensus 7 ~~~~~~k~ilItGa~g~IG~~la~~l~~~G~-~V~~~~r 44 (259)
T PRK08213 7 LFDLSGKTALVTGGSRGLGLQIAEALGEAGA-RVVLSAR 44 (259)
T ss_pred hhCcCCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeC
Confidence 3457789999998 69999999999999997 5777663
No 293
>PRK05855 short chain dehydrogenase; Validated
Probab=87.35 E-value=1.4 Score=49.05 Aligned_cols=36 Identities=31% Similarity=0.460 Sum_probs=30.1
Q ss_pred HHHcCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeC
Q 008516 8 EAIKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDM 44 (563)
Q Consensus 8 ~kL~~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~ 44 (563)
..+++.+++|+|+ ||||.++++.|+..|.. +.+++.
T Consensus 311 ~~~~~~~~lv~G~s~giG~~~a~~l~~~G~~-v~~~~r 347 (582)
T PRK05855 311 GPFSGKLVVVTGAGSGIGRETALAFAREGAE-VVASDI 347 (582)
T ss_pred ccCCCCEEEEECCcCHHHHHHHHHHHHCCCE-EEEEeC
Confidence 4567788999985 99999999999999985 777663
No 294
>PRK07074 short chain dehydrogenase; Provisional
Probab=87.34 E-value=2.4 Score=42.14 Aligned_cols=33 Identities=33% Similarity=0.580 Sum_probs=27.6
Q ss_pred CCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516 12 GAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMD 45 (563)
Q Consensus 12 ~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~D 45 (563)
+++++|.|+ |+||.++++.|+..|. ++.++|.+
T Consensus 2 ~k~ilItGat~~iG~~la~~L~~~g~-~v~~~~r~ 35 (257)
T PRK07074 2 KRTALVTGAAGGIGQALARRFLAAGD-RVLALDID 35 (257)
T ss_pred CCEEEEECCcchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 467999996 8999999999999996 68887643
No 295
>PRK07774 short chain dehydrogenase; Provisional
Probab=87.33 E-value=2.8 Score=41.26 Aligned_cols=34 Identities=29% Similarity=0.538 Sum_probs=28.8
Q ss_pred HcCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeC
Q 008516 10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDM 44 (563)
Q Consensus 10 L~~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~ 44 (563)
+++++++|.|+ |++|..+++.|+..|. ++.++|.
T Consensus 4 ~~~k~vlItGasg~iG~~la~~l~~~g~-~vi~~~r 38 (250)
T PRK07774 4 FDDKVAIVTGAAGGIGQAYAEALAREGA-SVVVADI 38 (250)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence 56788999996 9999999999999996 5777663
No 296
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=87.33 E-value=0.76 Score=50.27 Aligned_cols=34 Identities=29% Similarity=0.373 Sum_probs=30.1
Q ss_pred CCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCc
Q 008516 12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT 46 (563)
Q Consensus 12 ~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~ 46 (563)
..+|+|||+|-+||++|-.|++.|+ +++|+|+..
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~Gl-~V~LiE~rp 35 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKRGV-PVELYEMRP 35 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCC-cEEEEEccC
Confidence 4689999999999999999999997 589998644
No 297
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=87.31 E-value=3.1 Score=48.12 Aligned_cols=34 Identities=26% Similarity=0.458 Sum_probs=30.5
Q ss_pred cCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516 11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD 45 (563)
Q Consensus 11 ~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D 45 (563)
.+.+|+|||+|..|-..+..|++.|.. ++|+|.+
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~-V~V~E~~ 359 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVA-VTVYDRH 359 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCe-EEEEecC
Confidence 467999999999999999999999984 9999864
No 298
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=87.30 E-value=2.2 Score=42.38 Aligned_cols=36 Identities=28% Similarity=0.515 Sum_probs=30.5
Q ss_pred HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516 9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD 45 (563)
Q Consensus 9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D 45 (563)
++.+++++|.| .|+||..+++.|+..|. ++.++|.+
T Consensus 8 ~~~~k~ilItGas~~IG~~la~~l~~~G~-~v~~~~r~ 44 (256)
T PRK06124 8 SLAGQVALVTGSARGLGFEIARALAGAGA-HVLVNGRN 44 (256)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHcCC-eEEEEeCC
Confidence 36788999998 58999999999999997 68887754
No 299
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=87.29 E-value=2.6 Score=43.31 Aligned_cols=31 Identities=29% Similarity=0.582 Sum_probs=26.8
Q ss_pred cEEEECCcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516 14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMD 45 (563)
Q Consensus 14 ~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D 45 (563)
+|.|||+|.+|..++++|+..|. +++++|.+
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~-~V~~~dr~ 31 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGY-QLHVTTIG 31 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCC-eEEEEcCC
Confidence 58999999999999999999996 67777643
No 300
>PRK12827 short chain dehydrogenase; Provisional
Probab=87.25 E-value=3.1 Score=40.71 Aligned_cols=33 Identities=33% Similarity=0.704 Sum_probs=28.2
Q ss_pred HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEe
Q 008516 10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIID 43 (563)
Q Consensus 10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD 43 (563)
+++++++|.| .|+||.++++.|+..|. ++++++
T Consensus 4 ~~~~~ilItGasg~iG~~la~~l~~~g~-~v~~~~ 37 (249)
T PRK12827 4 LDSRRVLITGGSGGLGRAIAVRLAADGA-DVIVLD 37 (249)
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEc
Confidence 4678899998 69999999999999997 467766
No 301
>PRK07102 short chain dehydrogenase; Provisional
Probab=87.25 E-value=3 Score=41.04 Aligned_cols=32 Identities=22% Similarity=0.386 Sum_probs=26.7
Q ss_pred CcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516 13 AKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD 45 (563)
Q Consensus 13 ~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D 45 (563)
++++|.| .||||.++++.|+..|. +++++|.+
T Consensus 2 ~~vlItGas~giG~~~a~~l~~~G~-~Vi~~~r~ 34 (243)
T PRK07102 2 KKILIIGATSDIARACARRYAAAGA-RLYLAARD 34 (243)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhcCC-EEEEEeCC
Confidence 4788998 69999999999999996 57777643
No 302
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=87.22 E-value=0.79 Score=47.83 Aligned_cols=34 Identities=29% Similarity=0.502 Sum_probs=29.2
Q ss_pred CCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCc
Q 008516 12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT 46 (563)
Q Consensus 12 ~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~ 46 (563)
+.+|+|+|+|++|+.++..|+..|. .++++..+.
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g~-~V~~~~r~~ 38 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAGF-DVHFLLRSD 38 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCC-eEEEEEeCC
Confidence 4689999999999999999999994 688876543
No 303
>PRK07109 short chain dehydrogenase; Provisional
Probab=87.20 E-value=2.4 Score=44.61 Aligned_cols=35 Identities=23% Similarity=0.419 Sum_probs=29.1
Q ss_pred HHcCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeC
Q 008516 9 AIKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDM 44 (563)
Q Consensus 9 kL~~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~ 44 (563)
.+.+++|+|.|+ ||||.++++.|+..|. ++.+++.
T Consensus 5 ~l~~k~vlITGas~gIG~~la~~la~~G~-~Vvl~~R 40 (334)
T PRK07109 5 PIGRQVVVITGASAGVGRATARAFARRGA-KVVLLAR 40 (334)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEEC
Confidence 356788999985 9999999999999997 6777763
No 304
>PLN02780 ketoreductase/ oxidoreductase
Probab=87.19 E-value=3.5 Score=43.18 Aligned_cols=62 Identities=21% Similarity=0.312 Sum_probs=43.2
Q ss_pred cCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEecc
Q 008516 11 KGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA 89 (563)
Q Consensus 11 ~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~ 89 (563)
.++.++|.| .||||.++++.|+..|. ++.+++.+ ..|.+.+++.+++..+..++..+..
T Consensus 52 ~g~~~lITGAs~GIG~alA~~La~~G~-~Vil~~R~-------------------~~~l~~~~~~l~~~~~~~~~~~~~~ 111 (320)
T PLN02780 52 YGSWALVTGPTDGIGKGFAFQLARKGL-NLVLVARN-------------------PDKLKDVSDSIQSKYSKTQIKTVVV 111 (320)
T ss_pred cCCEEEEeCCCcHHHHHHHHHHHHCCC-CEEEEECC-------------------HHHHHHHHHHHHHHCCCcEEEEEEE
Confidence 467888998 58999999999999998 58777632 1344555566666555556655554
Q ss_pred CCC
Q 008516 90 NVK 92 (563)
Q Consensus 90 ~i~ 92 (563)
+++
T Consensus 112 Dl~ 114 (320)
T PLN02780 112 DFS 114 (320)
T ss_pred ECC
Confidence 443
No 305
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=87.18 E-value=1.3 Score=44.96 Aligned_cols=32 Identities=28% Similarity=0.504 Sum_probs=27.4
Q ss_pred EEEECC-cHHHHHHHHHHHHhC--C-CeEEEEeCCc
Q 008516 15 VLMVGA-GGIGCELLKTLALSG--F-QDIHIIDMDT 46 (563)
Q Consensus 15 VlvvGa-GgiG~ellknLal~G--v-g~I~iiD~D~ 46 (563)
|.|||+ |.+|..++-.|+..| . .+|.++|.+.
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~ 36 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDE 36 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCc
Confidence 579999 999999999999999 4 5899998443
No 306
>PRK06139 short chain dehydrogenase; Provisional
Probab=87.16 E-value=2 Score=45.29 Aligned_cols=35 Identities=29% Similarity=0.468 Sum_probs=29.4
Q ss_pred HHcCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeC
Q 008516 9 AIKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDM 44 (563)
Q Consensus 9 kL~~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~ 44 (563)
.+.+++|+|.|+ ||||.++++.|+..|. ++.+++.
T Consensus 4 ~l~~k~vlITGAs~GIG~aia~~la~~G~-~Vvl~~R 39 (330)
T PRK06139 4 PLHGAVVVITGASSGIGQATAEAFARRGA-RLVLAAR 39 (330)
T ss_pred CCCCCEEEEcCCCCHHHHHHHHHHHHCCC-EEEEEEC
Confidence 366789999996 8999999999999997 5777653
No 307
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=87.14 E-value=3.1 Score=42.23 Aligned_cols=74 Identities=15% Similarity=0.157 Sum_probs=49.2
Q ss_pred cCCcEEEECCcHHHHHHHHHHHHhCC---CeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEe
Q 008516 11 KGAKVLMVGAGGIGCELLKTLALSGF---QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH 87 (563)
Q Consensus 11 ~~~~VlvvGaGgiG~ellknLal~Gv---g~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~ 87 (563)
++.+|.++|+|.+|+.+++.|...|. .++.+.|.+.- ..+ +...
T Consensus 2 ~~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~--------------~~~-------------------~~~~ 48 (260)
T PTZ00431 2 ENIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKK--------------NTP-------------------FVYL 48 (260)
T ss_pred CCCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChh--------------cCC-------------------eEEe
Confidence 45789999999999999999999884 23666553220 000 0111
Q ss_pred ccCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHH
Q 008516 88 HANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLC 124 (563)
Q Consensus 88 ~~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c 124 (563)
. .+.+..+++|+||-|+.....+..+.++.
T Consensus 49 ----~---~~~~~~~~~D~Vilavkp~~~~~vl~~i~ 78 (260)
T PTZ00431 49 ----Q---SNEELAKTCDIIVLAVKPDLAGKVLLEIK 78 (260)
T ss_pred ----C---ChHHHHHhCCEEEEEeCHHHHHHHHHHHH
Confidence 1 12344678899999988777777666653
No 308
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=87.12 E-value=1.9 Score=42.85 Aligned_cols=34 Identities=29% Similarity=0.542 Sum_probs=28.9
Q ss_pred HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEe
Q 008516 9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIID 43 (563)
Q Consensus 9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD 43 (563)
++.+++|+|.| .|+||..+++.|+..|. ++.++|
T Consensus 8 ~l~~k~vlVtG~s~gIG~~la~~l~~~G~-~vv~~~ 42 (255)
T PRK06113 8 RLDGKCAIITGAGAGIGKEIAITFATAGA-SVVVSD 42 (255)
T ss_pred CcCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEe
Confidence 57789999998 78999999999999997 466655
No 309
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=87.11 E-value=1.6 Score=44.67 Aligned_cols=115 Identities=14% Similarity=0.196 Sum_probs=61.8
Q ss_pred CCcEEEECCcHHHHHHHHHHHHhCCCeEE---EEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEec
Q 008516 12 GAKVLMVGAGGIGCELLKTLALSGFQDIH---IIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH 88 (563)
Q Consensus 12 ~~~VlvvGaGgiG~ellknLal~Gvg~I~---iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~ 88 (563)
..||.|||||+||..+++.|..-+...+. +.|.+.-...++ .+..++-.--+.+....|++-|++-+
T Consensus 2 ~~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~----------~~~~~~~~~l~~ll~~~~DlVVE~A~ 71 (267)
T PRK13301 2 THRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPAL----------AGRVALLDGLPGLLAWRPDLVVEAAG 71 (267)
T ss_pred ceEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHh----------hccCcccCCHHHHhhcCCCEEEECCC
Confidence 46899999999999999998654433232 333222000011 01111111122233445666666433
Q ss_pred cCCCCCcchHhhcc-cccEEEE---ccCCHHHHHHHHHHHHhcCC-CEEEeccc
Q 008516 89 ANVKDPKFNVEFFK-QFNVVLN---GLDNLDARRHVNRLCLAADV-PLVESGTT 137 (563)
Q Consensus 89 ~~i~~~~~~~~~~~-~~dvVi~---alDn~~ar~~in~~c~~~~~-pli~~gt~ 137 (563)
...- ..+...+++ +.|+|+. |+-+.+.+..+.+.|++.+. -+|-+|..
T Consensus 72 ~~av-~e~~~~iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~~g~~i~ipSGAi 124 (267)
T PRK13301 72 QQAI-AEHAEGCLTAGLDMIICSAGALADDALRARLIAAAEAGGARIRVPAGAI 124 (267)
T ss_pred HHHH-HHHHHHHHhcCCCEEEEChhHhcCHHHHHHHHHHHHhCCCEEEEeChHH
Confidence 3221 123455565 6788876 45556677777888877664 34455543
No 310
>PRK09072 short chain dehydrogenase; Provisional
Probab=87.06 E-value=2.2 Score=42.59 Aligned_cols=35 Identities=34% Similarity=0.667 Sum_probs=29.4
Q ss_pred HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516 10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD 45 (563)
Q Consensus 10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D 45 (563)
+++++++|.| .|++|.++++.|+..|. ++.+++.+
T Consensus 3 ~~~~~vlItG~s~~iG~~ia~~l~~~G~-~V~~~~r~ 38 (263)
T PRK09072 3 LKDKRVLLTGASGGIGQALAEALAAAGA-RLLLVGRN 38 (263)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEECC
Confidence 4678899998 59999999999999996 58887743
No 311
>PRK07806 short chain dehydrogenase; Provisional
Probab=87.04 E-value=2.5 Score=41.69 Aligned_cols=33 Identities=30% Similarity=0.484 Sum_probs=27.5
Q ss_pred HcCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEe
Q 008516 10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIID 43 (563)
Q Consensus 10 L~~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD 43 (563)
+.+++++|.|+ |+||..+++.|+..|. ++.+++
T Consensus 4 ~~~k~vlItGasggiG~~l~~~l~~~G~-~V~~~~ 37 (248)
T PRK07806 4 LPGKTALVTGSSRGIGADTAKILAGAGA-HVVVNY 37 (248)
T ss_pred CCCcEEEEECCCCcHHHHHHHHHHHCCC-EEEEEe
Confidence 56788999995 9999999999999996 465554
No 312
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=87.02 E-value=2.5 Score=42.73 Aligned_cols=30 Identities=30% Similarity=0.558 Sum_probs=25.5
Q ss_pred cEEEECC-cHHHHHHHHHHHHhCCCeEEEEeC
Q 008516 14 KVLMVGA-GGIGCELLKTLALSGFQDIHIIDM 44 (563)
Q Consensus 14 ~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~ 44 (563)
||+|.|+ |.+|..+++.|...|. ++++++.
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g~-~v~~~~r 31 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEGR-VVVALTS 31 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCC-EEEEeCC
Confidence 6899995 9999999999999985 6777764
No 313
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=86.99 E-value=1.9 Score=43.56 Aligned_cols=88 Identities=18% Similarity=0.208 Sum_probs=50.4
Q ss_pred cEEEECCcHHHHHHHHHHHHhCCC--eEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccCC
Q 008516 14 KVLMVGAGGIGCELLKTLALSGFQ--DIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV 91 (563)
Q Consensus 14 ~VlvvGaGgiG~ellknLal~Gvg--~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~i 91 (563)
+|.+||+|.+|..+++.|...|.. .+.+.| | ...|++.+++ ..+.+.+. .
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~----------r---------~~~~~~~l~~----~~~~~~~~--~--- 53 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSP----------R---------NAQIAARLAE----RFPKVRIA--K--- 53 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhCCCChheEEEEC----------C---------CHHHHHHHHH----HcCCceEe--C---
Confidence 699999999999999999998853 233322 1 1223332222 22322221 1
Q ss_pred CCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEE
Q 008516 92 KDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVE 133 (563)
Q Consensus 92 ~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~ 133 (563)
...+..++.|+|+.|+-.......+.......+.-+|+
T Consensus 54 ----~~~~~~~~aDvVilav~p~~~~~vl~~l~~~~~~~vis 91 (258)
T PRK06476 54 ----DNQAVVDRSDVVFLAVRPQIAEEVLRALRFRPGQTVIS 91 (258)
T ss_pred ----CHHHHHHhCCEEEEEeCHHHHHHHHHHhccCCCCEEEE
Confidence 12345678999999988544555554432223333444
No 314
>PRK13018 cell division protein FtsZ; Provisional
Probab=86.94 E-value=3.5 Score=44.43 Aligned_cols=38 Identities=26% Similarity=0.489 Sum_probs=32.5
Q ss_pred HcCCcEEEECCcHHHHHHHHHHHHhCCC--eEEEEeCCcc
Q 008516 10 IKGAKVLMVGAGGIGCELLKTLALSGFQ--DIHIIDMDTI 47 (563)
Q Consensus 10 L~~~~VlvvGaGgiG~ellknLal~Gvg--~I~iiD~D~V 47 (563)
..+.+|.|||+||-||-++.+|...|+. .+..++.|.-
T Consensus 26 ~~~~~I~ViGvGGaG~N~v~~m~~~~~~~v~~iaiNTD~q 65 (378)
T PRK13018 26 FGNPKIVVVGCGGAGNNTINRLYEIGIEGAETIAINTDAQ 65 (378)
T ss_pred cCCCeEEEEEeCCcHHHHHHHHHHcCCCCceEEEEECCHH
Confidence 3568999999999999999999999976 5677788773
No 315
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=86.94 E-value=1.2 Score=38.96 Aligned_cols=85 Identities=21% Similarity=0.359 Sum_probs=52.4
Q ss_pred cEEEECCcHHHHHHHHHHHHhC--CCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccCC
Q 008516 14 KVLMVGAGGIGCELLKTLALSG--FQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV 91 (563)
Q Consensus 14 ~VlvvGaGgiG~ellknLal~G--vg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~i 91 (563)
||.|||+|.+|...+..+...+ +.-..++|.+ ..+++.+++ +. ++. .+.+
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~-------------------~~~~~~~~~---~~--~~~--~~~~-- 53 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPD-------------------PERAEAFAE---KY--GIP--VYTD-- 53 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSS-------------------HHHHHHHHH---HT--TSE--EESS--
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCC-------------------HHHHHHHHH---Hh--ccc--chhH--
Confidence 7999999999999999999883 3223344432 233333322 22 222 2211
Q ss_pred CCCcchHhhcc--cccEEEEccCCHHHHHHHHHHHHhcCCCEE
Q 008516 92 KDPKFNVEFFK--QFNVVLNGLDNLDARRHVNRLCLAADVPLV 132 (563)
Q Consensus 92 ~~~~~~~~~~~--~~dvVi~alDn~~ar~~in~~c~~~~~pli 132 (563)
-.++++ +.|+|+.++.+ .....+-..|.++|++++
T Consensus 54 -----~~~ll~~~~~D~V~I~tp~-~~h~~~~~~~l~~g~~v~ 90 (120)
T PF01408_consen 54 -----LEELLADEDVDAVIIATPP-SSHAEIAKKALEAGKHVL 90 (120)
T ss_dssp -----HHHHHHHTTESEEEEESSG-GGHHHHHHHHHHTTSEEE
T ss_pred -----HHHHHHhhcCCEEEEecCC-cchHHHHHHHHHcCCEEE
Confidence 134454 78999998876 446666777778877544
No 316
>PRK08643 acetoin reductase; Validated
Probab=86.91 E-value=3.5 Score=40.92 Aligned_cols=32 Identities=34% Similarity=0.635 Sum_probs=26.7
Q ss_pred CCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516 12 GAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM 44 (563)
Q Consensus 12 ~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~ 44 (563)
+++++|.| .|+||.++++.|+..|. ++.++|.
T Consensus 2 ~k~~lItGas~giG~~la~~l~~~G~-~v~~~~r 34 (256)
T PRK08643 2 SKVALVTGAGQGIGFAIAKRLVEDGF-KVAIVDY 34 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence 46788887 78999999999999997 6777763
No 317
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=86.89 E-value=0.96 Score=48.04 Aligned_cols=58 Identities=22% Similarity=0.275 Sum_probs=34.5
Q ss_pred cchhhHHHHHHHHHHHHHHHHHhcCcccc--ceeeeccc-ccccccccccCCCCCCCCcccCCC
Q 008516 375 HAVATTNAIIAGLIVIEAIKVLLKDTDKY--RMTYCLEH-ITKKMLLMPVEPYEPNKSCYVCSE 435 (563)
Q Consensus 375 PAIATTnAiVAGl~vlE~~K~l~~~~~~~--r~~f~~~~-~~~~~~~~p~~~~~pn~~C~vC~~ 435 (563)
+.++.+.++||++++.|++|+|.|..+.. |...++.. ..... ... ....+|+|++|+.
T Consensus 185 gv~~p~~~~i~~~~a~ealk~l~g~~~~l~~~l~~~d~~~~~~~~--~~~-~~~~~~~Cp~Cg~ 245 (339)
T PRK07688 185 GIISPAVQIVASYQVTEALKLLVGDYEALRDGLVSFDVWKNEYSC--MNV-QKLKKDNCPSCGE 245 (339)
T ss_pred CcccHHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEEECCCCeEEE--EEe-cCCCCCCCCCCCC
Confidence 34555778999999999999999864332 22222221 11111 111 1134689999985
No 318
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=86.86 E-value=0.88 Score=44.09 Aligned_cols=106 Identities=24% Similarity=0.275 Sum_probs=64.0
Q ss_pred cEEEECCcHHHHH-HHHHHHHh----CCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEec
Q 008516 14 KVLMVGAGGIGCE-LLKTLALS----GFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH 88 (563)
Q Consensus 14 ~VlvvGaGgiG~e-llknLal~----Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~ 88 (563)
||.+||+|+.-.. .+..+... +.++|.++|-|. ..|.. =...+++.+++.++.++|+...
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~---~RL~~------------~~~~~~~~~~~~~~~~~v~~tt 65 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDE---ERLEI------------VERLARRMVEEAGADLKVEATT 65 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCH---HHHHH------------HHHHHHHHHHHCTTSSEEEEES
T ss_pred CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCH---HHHHH------------HHHHHHHHHHhcCCCeEEEEeC
Confidence 6899999987554 33333322 235888888554 11111 0234555666788888988765
Q ss_pred cCCCCCcchHhhcccccEEEEcc--CCHHHHHHHHHHHHhcCCCEEEecccccee
Q 008516 89 ANVKDPKFNVEFFKQFNVVLNGL--DNLDARRHVNRLCLAADVPLVESGTTGFLG 141 (563)
Q Consensus 89 ~~i~~~~~~~~~~~~~dvVi~al--Dn~~ar~~in~~c~~~~~pli~~gt~G~~G 141 (563)
+. .+-++++|+||++. ...++|..=-+...++|+.-....|.|..|
T Consensus 66 d~-------~eAl~gADfVi~~irvGg~~~r~~De~Ip~k~Gi~~~~~eT~G~GG 113 (183)
T PF02056_consen 66 DR-------REALEGADFVINQIRVGGLEAREIDEEIPLKYGIVGTIQETVGPGG 113 (183)
T ss_dssp SH-------HHHHTTESEEEE---TTHHHHHHHHHHTGGCCTTT-BTTSSSTHHH
T ss_pred CH-------HHHhCCCCEEEEEeeecchHHHHHHHHHHHHhCCccccccccCccH
Confidence 43 46688999999964 555666665566777776554455555444
No 319
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=86.86 E-value=0.96 Score=53.00 Aligned_cols=163 Identities=12% Similarity=0.096 Sum_probs=86.9
Q ss_pred CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCc---cccCCCCCCCCchHHHHHHHHHHhhCCCceEEEecc
Q 008516 13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLN---RQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA 89 (563)
Q Consensus 13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLn---RqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~ 89 (563)
.+|.|||+|-+|+-++-.++..|+ .++++|.+.=...... ++.+=..-.-|+-..+...+.+.+ |+...
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~------i~~~~- 407 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGL-KTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSN------LTPTL- 407 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCC-cEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhC------eEEeC-
Confidence 479999999999999999999998 6888885542211100 000000001111111111122211 11111
Q ss_pred CCCCCcchHhhcccccEEEEcc-CCHHHHHHHHHHHHhcCC--CEEEecccccee-eEEEEeCCCCccccccCCCCCCCC
Q 008516 90 NVKDPKFNVEFFKQFNVVLNGL-DNLDARRHVNRLCLAADV--PLVESGTTGFLG-QVTVHVKGKTECYECQPKPAPKTY 165 (563)
Q Consensus 90 ~i~~~~~~~~~~~~~dvVi~al-Dn~~ar~~in~~c~~~~~--pli~~gt~G~~G-~v~v~~~~~t~Cy~C~~~~~~~~~ 165 (563)
+.+-++++|+||.|. .+.+....+-+..-..-. .++.+.|.+..- .+.-......-+..-+.-.++..-
T Consensus 408 -------~~~~~~~aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~ig~Hff~P~~~m 480 (737)
T TIGR02441 408 -------DYSGFKNADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSALPIKDIAAVSSRPEKVIGMHYFSPVDKM 480 (737)
T ss_pred -------CHHHhccCCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCccceEEEeccCCcccC
Confidence 113468999999975 667766666554443322 355555554321 010011111223333333445556
Q ss_pred CceeeccCCCCchhHHHHHHHHHHHH
Q 008516 166 PVCTITSTPSKFVHCIVWAKDLLFAK 191 (563)
Q Consensus 166 p~cti~~~p~~~~hci~~a~~~lf~~ 191 (563)
|...|...+.+...++..+.+ +...
T Consensus 481 ~LvEvv~g~~Ts~~~~~~~~~-~~~~ 505 (737)
T TIGR02441 481 QLLEIITHDGTSKDTLASAVA-VGLK 505 (737)
T ss_pred ceEEEeCCCCCCHHHHHHHHH-HHHH
Confidence 788888888888888998887 3443
No 320
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=86.78 E-value=2.9 Score=41.14 Aligned_cols=34 Identities=26% Similarity=0.583 Sum_probs=28.3
Q ss_pred HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516 10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM 44 (563)
Q Consensus 10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~ 44 (563)
|++++++|.| .|++|.++++.|+..|. ++.++|.
T Consensus 1 ~~~~~ilItGas~~iG~~la~~l~~~g~-~v~~~~r 35 (250)
T TIGR03206 1 LKDKTAIVTGGGGGIGGATCRRFAEEGA-KVAVFDL 35 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEecC
Confidence 4578899998 58999999999999987 5777653
No 321
>PRK06523 short chain dehydrogenase; Provisional
Probab=86.78 E-value=2 Score=42.78 Aligned_cols=55 Identities=18% Similarity=0.330 Sum_probs=38.5
Q ss_pred HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCch
Q 008516 9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQS 66 (563)
Q Consensus 9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~ 66 (563)
++++++++|.| .||||.++++.|+..|. ++.+++.+.-+ ++.....+-.-|+...
T Consensus 6 ~~~~k~vlItGas~gIG~~ia~~l~~~G~-~v~~~~r~~~~--~~~~~~~~~~~D~~~~ 61 (260)
T PRK06523 6 ELAGKRALVTGGTKGIGAATVARLLEAGA-RVVTTARSRPD--DLPEGVEFVAADLTTA 61 (260)
T ss_pred CCCCCEEEEECCCCchhHHHHHHHHHCCC-EEEEEeCChhh--hcCCceeEEecCCCCH
Confidence 46788999999 58999999999999997 58888765422 2222232334566554
No 322
>PRK08589 short chain dehydrogenase; Validated
Probab=86.70 E-value=2.3 Score=42.94 Aligned_cols=34 Identities=26% Similarity=0.381 Sum_probs=28.6
Q ss_pred HHcCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEe
Q 008516 9 AIKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIID 43 (563)
Q Consensus 9 kL~~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD 43 (563)
++.+++++|.|+ ||||.++++.|+..|. ++.++|
T Consensus 3 ~l~~k~vlItGas~gIG~aia~~l~~~G~-~vi~~~ 37 (272)
T PRK08589 3 RLENKVAVITGASTGIGQASAIALAQEGA-YVLAVD 37 (272)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEe
Confidence 366788999985 8999999999999996 566665
No 323
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=86.67 E-value=3 Score=43.25 Aligned_cols=32 Identities=22% Similarity=0.578 Sum_probs=27.9
Q ss_pred CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516 13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD 45 (563)
Q Consensus 13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D 45 (563)
.+|.+||+|.+|..++.+|+..|. .++++|.+
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~-~V~v~d~~ 33 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGH-QLQVFDVN 33 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCC-eEEEEcCC
Confidence 379999999999999999999996 68887753
No 324
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=86.62 E-value=4.5 Score=43.00 Aligned_cols=95 Identities=23% Similarity=0.253 Sum_probs=54.2
Q ss_pred CcEEEECC-cHHHHHHHHHHHHhCCCeEE-EEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccC
Q 008516 13 AKVLMVGA-GGIGCELLKTLALSGFQDIH-IIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN 90 (563)
Q Consensus 13 ~~VlvvGa-GgiG~ellknLal~Gvg~I~-iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~ 90 (563)
.||+|+|+ |.+|.++++.|....--++. +.|. ...|+. +.+..|..... ....
T Consensus 3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~----------------~~~g~~--------l~~~~~~~~~~-~~~~ 57 (343)
T PRK00436 3 IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSR----------------SSAGKP--------LSDVHPHLRGL-VDLV 57 (343)
T ss_pred eEEEEECCCCHHHHHHHHHHHcCCCceEEEEECc----------------cccCcc--------hHHhCcccccc-cCce
Confidence 68999998 88999999999976433443 3331 112221 11111211100 0001
Q ss_pred CCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEec
Q 008516 91 VKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESG 135 (563)
Q Consensus 91 i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~g 135 (563)
+.+ .+...+.+.|+|+.|+.+.....++.. +.+.++++||.+
T Consensus 58 ~~~--~~~~~~~~vD~Vf~alP~~~~~~~v~~-a~~aG~~VID~S 99 (343)
T PRK00436 58 LEP--LDPEILAGADVVFLALPHGVSMDLAPQ-LLEAGVKVIDLS 99 (343)
T ss_pred eec--CCHHHhcCCCEEEECCCcHHHHHHHHH-HHhCCCEEEECC
Confidence 111 112245789999999998666655544 566889999865
No 325
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=86.56 E-value=2.6 Score=41.03 Aligned_cols=35 Identities=31% Similarity=0.560 Sum_probs=29.2
Q ss_pred HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516 10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD 45 (563)
Q Consensus 10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D 45 (563)
+.+++|+|.| .|++|.++++.|+..|.. +.+++.+
T Consensus 3 ~~~~~ilItGasg~iG~~l~~~l~~~g~~-v~~~~r~ 38 (246)
T PRK05653 3 LQGKTALVTGASRGIGRAIALRLAADGAK-VVIYDSN 38 (246)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCC
Confidence 4567899998 499999999999999986 7777654
No 326
>PRK06114 short chain dehydrogenase; Provisional
Probab=86.55 E-value=2.7 Score=41.79 Aligned_cols=35 Identities=29% Similarity=0.582 Sum_probs=29.1
Q ss_pred HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516 9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM 44 (563)
Q Consensus 9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~ 44 (563)
++.+++++|.| .||||.++++.|+..|. ++.++|.
T Consensus 5 ~~~~k~~lVtG~s~gIG~~ia~~l~~~G~-~v~~~~r 40 (254)
T PRK06114 5 DLDGQVAFVTGAGSGIGQRIAIGLAQAGA-DVALFDL 40 (254)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence 36678899997 77999999999999997 6777764
No 327
>PRK06198 short chain dehydrogenase; Provisional
Probab=86.54 E-value=3 Score=41.43 Aligned_cols=37 Identities=22% Similarity=0.454 Sum_probs=31.4
Q ss_pred HHcCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516 9 AIKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMD 45 (563)
Q Consensus 9 kL~~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~D 45 (563)
.+.+++++|.|+ |+||..+++.|+..|..++.++|.+
T Consensus 3 ~~~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~ 40 (260)
T PRK06198 3 RLDGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRN 40 (260)
T ss_pred CCCCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCC
Confidence 367788999984 8999999999999998778888754
No 328
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=86.32 E-value=2.7 Score=41.45 Aligned_cols=28 Identities=32% Similarity=0.573 Sum_probs=23.9
Q ss_pred HcCCcEEEEC-CcHHHHHHHHHHHHhCCC
Q 008516 10 IKGAKVLMVG-AGGIGCELLKTLALSGFQ 37 (563)
Q Consensus 10 L~~~~VlvvG-aGgiG~ellknLal~Gvg 37 (563)
+.+++++|.| .|+||.++++.|+..|..
T Consensus 2 ~~~~~vlItGa~g~iG~~~a~~l~~~g~~ 30 (250)
T PRK08063 2 FSGKVALVTGSSRGIGKAIALRLAEEGYD 30 (250)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCE
Confidence 4567899998 589999999999999864
No 329
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=86.32 E-value=2.9 Score=41.46 Aligned_cols=32 Identities=19% Similarity=0.319 Sum_probs=26.6
Q ss_pred CcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516 13 AKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD 45 (563)
Q Consensus 13 ~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D 45 (563)
++|+|.| .|++|.++++.|+..|. ++.++|.+
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~-~V~~~~r~ 33 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGH-KVIATGRR 33 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC-EEEEEECC
Confidence 3689998 59999999999999997 57777643
No 330
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=86.27 E-value=3.7 Score=43.19 Aligned_cols=33 Identities=30% Similarity=0.547 Sum_probs=28.7
Q ss_pred cCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516 11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM 44 (563)
Q Consensus 11 ~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~ 44 (563)
.+.+|+|.|+|++|...+..+..+|. +++++|.
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~ 204 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNR 204 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEec
Confidence 56899999999999999999989998 5777764
No 331
>PRK08324 short chain dehydrogenase; Validated
Probab=86.25 E-value=4.4 Score=47.07 Aligned_cols=34 Identities=41% Similarity=0.609 Sum_probs=29.0
Q ss_pred cCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516 11 KGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD 45 (563)
Q Consensus 11 ~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D 45 (563)
.+++|+|.| .|+||..+++.|+..|. ++.++|.+
T Consensus 421 ~gk~vLVTGasggIG~~la~~L~~~Ga-~Vvl~~r~ 455 (681)
T PRK08324 421 AGKVALVTGAAGGIGKATAKRLAAEGA-CVVLADLD 455 (681)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCcC-EEEEEeCC
Confidence 457899999 59999999999999997 68888743
No 332
>PLN02688 pyrroline-5-carboxylate reductase
Probab=86.17 E-value=3.2 Score=41.94 Aligned_cols=78 Identities=21% Similarity=0.299 Sum_probs=48.1
Q ss_pred CcEEEECCcHHHHHHHHHHHHhCC---CeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEecc
Q 008516 13 AKVLMVGAGGIGCELLKTLALSGF---QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA 89 (563)
Q Consensus 13 ~~VlvvGaGgiG~ellknLal~Gv---g~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~ 89 (563)
.||.+||+|.+|..++++|...|. ..|++++ +| ...|++.+ .+. ++.+..
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~---------~r---------~~~~~~~~----~~~--g~~~~~--- 53 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTAD---------DS---------NPARRDVF----QSL--GVKTAA--- 53 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEe---------CC---------CHHHHHHH----HHc--CCEEeC---
Confidence 479999999999999999999985 2455541 11 11232222 222 233211
Q ss_pred CCCCCcchHhhcccccEEEEccCCHHHHHHHHHH
Q 008516 90 NVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRL 123 (563)
Q Consensus 90 ~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~ 123 (563)
...+..++.|+||.++.....+..+..+
T Consensus 54 ------~~~e~~~~aDvVil~v~~~~~~~vl~~l 81 (266)
T PLN02688 54 ------SNTEVVKSSDVIILAVKPQVVKDVLTEL 81 (266)
T ss_pred ------ChHHHHhcCCEEEEEECcHHHHHHHHHH
Confidence 1234567899999999765556665554
No 333
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=86.16 E-value=1 Score=46.88 Aligned_cols=35 Identities=31% Similarity=0.510 Sum_probs=31.6
Q ss_pred HcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516 10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD 45 (563)
Q Consensus 10 L~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D 45 (563)
+.+++|+|+|+|++|..+++.|...|. +++++|.+
T Consensus 150 l~g~kvlViG~G~iG~~~a~~L~~~Ga-~V~v~~r~ 184 (296)
T PRK08306 150 IHGSNVLVLGFGRTGMTLARTLKALGA-NVTVGARK 184 (296)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence 568999999999999999999999997 89998744
No 334
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=86.15 E-value=1.2 Score=40.59 Aligned_cols=83 Identities=17% Similarity=0.285 Sum_probs=45.0
Q ss_pred HcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEecc
Q 008516 10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA 89 (563)
Q Consensus 10 L~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~ 89 (563)
-...||-|||+|-+|..+++.|...|. .|.-+ +. + +...++.+..+-+...+..
T Consensus 8 ~~~l~I~iIGaGrVG~~La~aL~~ag~-~v~~v---------------~s-----r--s~~sa~~a~~~~~~~~~~~--- 61 (127)
T PF10727_consen 8 AARLKIGIIGAGRVGTALARALARAGH-EVVGV---------------YS-----R--SPASAERAAAFIGAGAILD--- 61 (127)
T ss_dssp ----EEEEECTSCCCCHHHHHHHHTTS-EEEEE---------------SS-----C--HH-HHHHHHC--TT--------
T ss_pred CCccEEEEECCCHHHHHHHHHHHHCCC-eEEEE---------------Ee-----C--Ccccccccccccccccccc---
Confidence 346789999999999999999999996 34332 21 1 1223344444444433221
Q ss_pred CCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHH
Q 008516 90 NVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCL 125 (563)
Q Consensus 90 ~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~ 125 (563)
..+...++|+|+.++-+........+++.
T Consensus 62 -------~~~~~~~aDlv~iavpDdaI~~va~~La~ 90 (127)
T PF10727_consen 62 -------LEEILRDADLVFIAVPDDAIAEVAEQLAQ 90 (127)
T ss_dssp -------TTGGGCC-SEEEE-S-CCHHHHHHHHHHC
T ss_pred -------cccccccCCEEEEEechHHHHHHHHHHHH
Confidence 13557889999998865555555555543
No 335
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=86.12 E-value=3.5 Score=45.11 Aligned_cols=35 Identities=26% Similarity=0.555 Sum_probs=30.6
Q ss_pred HcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516 10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD 45 (563)
Q Consensus 10 L~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D 45 (563)
+.+++|+|+|.|+.|..+++.|+..|. ++++.|.+
T Consensus 3 ~~~~~~~v~G~g~~G~~~a~~l~~~g~-~v~~~d~~ 37 (445)
T PRK04308 3 FQNKKILVAGLGGTGISMIAYLRKNGA-EVAAYDAE 37 (445)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 457899999999999999999999997 68888854
No 336
>PRK08226 short chain dehydrogenase; Provisional
Probab=86.10 E-value=2.7 Score=41.87 Aligned_cols=35 Identities=26% Similarity=0.566 Sum_probs=29.4
Q ss_pred HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516 9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM 44 (563)
Q Consensus 9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~ 44 (563)
++.+++++|.| .|+||..+++.|+..|. ++.+++.
T Consensus 3 ~~~~~~~lItG~s~giG~~la~~l~~~G~-~Vv~~~r 38 (263)
T PRK08226 3 KLTGKTALITGALQGIGEGIARVFARHGA-NLILLDI 38 (263)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEecC
Confidence 46678899998 78999999999999997 4777753
No 337
>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional
Probab=86.08 E-value=4.6 Score=42.26 Aligned_cols=30 Identities=23% Similarity=0.454 Sum_probs=24.9
Q ss_pred cEEEECC-cHHHHHHHHHHHHhCCCeEEEEe
Q 008516 14 KVLMVGA-GGIGCELLKTLALSGFQDIHIID 43 (563)
Q Consensus 14 ~VlvvGa-GgiG~ellknLal~Gvg~I~iiD 43 (563)
||+|.|+ |.||..+++.|...|...+..+|
T Consensus 2 kilITGgtG~iG~~l~~~L~~~g~~~v~~~~ 32 (352)
T PRK10084 2 KILVTGGAGFIGSAVVRHIINNTQDSVVNVD 32 (352)
T ss_pred eEEEECCCcHHhHHHHHHHHHhCCCeEEEec
Confidence 7999985 99999999999999875555555
No 338
>PRK07677 short chain dehydrogenase; Provisional
Probab=86.08 E-value=2.9 Score=41.50 Aligned_cols=33 Identities=24% Similarity=0.431 Sum_probs=27.2
Q ss_pred CCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516 12 GAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD 45 (563)
Q Consensus 12 ~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D 45 (563)
+++++|.| .||||..+++.|+..|. ++.++|.+
T Consensus 1 ~k~~lItG~s~giG~~ia~~l~~~G~-~Vi~~~r~ 34 (252)
T PRK07677 1 EKVVIITGGSSGMGKAMAKRFAEEGA-NVVITGRT 34 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence 35788888 57899999999999998 68887644
No 339
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=86.00 E-value=2.5 Score=44.92 Aligned_cols=91 Identities=19% Similarity=0.320 Sum_probs=56.4
Q ss_pred cEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccCCC
Q 008516 14 KVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVK 92 (563)
Q Consensus 14 ~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~i~ 92 (563)
+|+||| .|.+|.|+++.|...|...+.++= +.+..+.|+.=. + .+..+ ...++.
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~-------------~as~~~~g~~~~---------~-~~~~~--~~~~~~ 55 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVL-------------LASDRSAGRKVT---------F-KGKEL--EVNEAK 55 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEE-------------EeccccCCCeee---------e-CCeeE--EEEeCC
Confidence 689999 789999999999987765443321 123334444211 0 11111 111121
Q ss_pred CCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEec
Q 008516 93 DPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESG 135 (563)
Q Consensus 93 ~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~g 135 (563)
.+-+++.|+|+.|+.+..++.+..+. ...|..+||..
T Consensus 56 -----~~~~~~~D~v~~a~g~~~s~~~a~~~-~~~G~~VID~s 92 (339)
T TIGR01296 56 -----IESFEGIDIALFSAGGSVSKEFAPKA-AKCGAIVIDNT 92 (339)
T ss_pred -----hHHhcCCCEEEECCCHHHHHHHHHHH-HHCCCEEEECC
Confidence 22348999999999988888776554 55677788765
No 340
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=86.00 E-value=2.4 Score=48.00 Aligned_cols=77 Identities=18% Similarity=0.224 Sum_probs=50.2
Q ss_pred CCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccCC
Q 008516 12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV 91 (563)
Q Consensus 12 ~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~i 91 (563)
+.+++|+|+|.+|..+++.|...|. .++++|.|.- |++.+ ++. ......++.
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~g~-~vvvId~d~~-------------------~~~~~----~~~----g~~~i~GD~ 468 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAAGI-PLVVIETSRT-------------------RVDEL----RER----GIRAVLGNA 468 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHCCC-CEEEEECCHH-------------------HHHHH----HHC----CCeEEEcCC
Confidence 4789999999999999999999997 5889986642 22222 221 233455555
Q ss_pred CCCc-chHhhcccccEEEEccCCHHH
Q 008516 92 KDPK-FNVEFFKQFNVVLNGLDNLDA 116 (563)
Q Consensus 92 ~~~~-~~~~~~~~~dvVi~alDn~~a 116 (563)
++.. ....-.+++|.|+.+++|...
T Consensus 469 ~~~~~L~~a~i~~a~~viv~~~~~~~ 494 (558)
T PRK10669 469 ANEEIMQLAHLDCARWLLLTIPNGYE 494 (558)
T ss_pred CCHHHHHhcCccccCEEEEEcCChHH
Confidence 4321 122335788988887765443
No 341
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=85.96 E-value=2.7 Score=42.14 Aligned_cols=34 Identities=35% Similarity=0.529 Sum_probs=28.2
Q ss_pred HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEe
Q 008516 9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIID 43 (563)
Q Consensus 9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD 43 (563)
++.+++++|.| .|+||.++++.|+..|.. +.++|
T Consensus 7 ~~~~k~~lItGa~~~iG~~ia~~l~~~G~~-vv~~~ 41 (265)
T PRK07097 7 SLKGKIALITGASYGIGFAIAKAYAKAGAT-IVFND 41 (265)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCe-EEEEe
Confidence 45678899998 589999999999999974 66665
No 342
>PRK07856 short chain dehydrogenase; Provisional
Probab=85.89 E-value=1.6 Score=43.28 Aligned_cols=36 Identities=22% Similarity=0.473 Sum_probs=30.4
Q ss_pred HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCc
Q 008516 10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDT 46 (563)
Q Consensus 10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~ 46 (563)
+.+++++|.| .||||.++++.|+..|. ++.++|.+.
T Consensus 4 ~~~k~~lItGas~gIG~~la~~l~~~g~-~v~~~~r~~ 40 (252)
T PRK07856 4 LTGRVVLVTGGTRGIGAGIARAFLAAGA-TVVVCGRRA 40 (252)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCh
Confidence 5678899998 58999999999999997 688887653
No 343
>PLN00198 anthocyanidin reductase; Provisional
Probab=85.74 E-value=9.1 Score=39.89 Aligned_cols=35 Identities=20% Similarity=0.325 Sum_probs=28.3
Q ss_pred HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516 10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD 45 (563)
Q Consensus 10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D 45 (563)
+++++|+|.| +|.||+.+++.|...|. ++++++.|
T Consensus 7 ~~~~~vlItG~~GfIG~~l~~~L~~~g~-~V~~~~r~ 42 (338)
T PLN00198 7 TGKKTACVIGGTGFLASLLIKLLLQKGY-AVNTTVRD 42 (338)
T ss_pred CCCCeEEEECCchHHHHHHHHHHHHCCC-EEEEEECC
Confidence 3567899998 78899999999999996 56655543
No 344
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=85.73 E-value=3.6 Score=40.78 Aligned_cols=34 Identities=41% Similarity=0.588 Sum_probs=28.4
Q ss_pred HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEe
Q 008516 9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIID 43 (563)
Q Consensus 9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD 43 (563)
.|.+++++|.| .||||..+++.|+..|. ++.++|
T Consensus 6 ~l~~k~~lItGas~giG~~ia~~L~~~G~-~vvl~~ 40 (254)
T PRK08085 6 SLAGKNILITGSAQGIGFLLATGLAEYGA-EIIIND 40 (254)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHcCC-EEEEEc
Confidence 36678899998 68999999999999996 566665
No 345
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=85.68 E-value=2.9 Score=40.86 Aligned_cols=34 Identities=26% Similarity=0.429 Sum_probs=28.7
Q ss_pred HcCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeC
Q 008516 10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDM 44 (563)
Q Consensus 10 L~~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~ 44 (563)
+++++|+|.|+ |++|..+++.|+..|. ++.+++.
T Consensus 3 ~~~~~vlItGa~g~iG~~~a~~l~~~G~-~V~~~~r 37 (238)
T PRK05786 3 LKGKKVAIIGVSEGLGYAVAYFALKEGA-QVCINSR 37 (238)
T ss_pred cCCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence 56789999985 7899999999999998 5777654
No 346
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=85.65 E-value=1.3 Score=47.52 Aligned_cols=39 Identities=23% Similarity=0.390 Sum_probs=33.5
Q ss_pred CCcEEEECCcHHHHHHHHHHHHh-CCCeEEEEeCCccCcc
Q 008516 12 GAKVLMVGAGGIGCELLKTLALS-GFQDIHIIDMDTIEVS 50 (563)
Q Consensus 12 ~~~VlvvGaGgiG~ellknLal~-Gvg~I~iiD~D~Ve~s 50 (563)
...|+|||+|-+|+.+|-.|++. |..+++|+|.+.+-..
T Consensus 30 ~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~~~~g 69 (407)
T TIGR01373 30 TYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWLGGG 69 (407)
T ss_pred cCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEcccccCc
Confidence 34699999999999999999985 8778999998876543
No 347
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=85.63 E-value=3.9 Score=43.40 Aligned_cols=92 Identities=20% Similarity=0.298 Sum_probs=55.4
Q ss_pred CcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccCC
Q 008516 13 AKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV 91 (563)
Q Consensus 13 ~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~i 91 (563)
.||.|+|+ |-+|.|+++.|...+.-...+.= +...+..|++= . + .+.... +
T Consensus 5 ~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~-------------v~s~~~aG~~l--------~-~-~~~~l~-----~ 56 (336)
T PRK05671 5 LDIAVVGATGTVGEALVQILEERDFPVGTLHL-------------LASSESAGHSV--------P-F-AGKNLR-----V 56 (336)
T ss_pred CEEEEEccCCHHHHHHHHHHhhCCCCceEEEE-------------EECcccCCCee--------c-c-CCcceE-----E
Confidence 68999996 88999999999976654333221 11223345431 1 1 111111 1
Q ss_pred CCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEec
Q 008516 92 KDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESG 135 (563)
Q Consensus 92 ~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~g 135 (563)
.+.. ..+ ++++|+|+.|+.+-.++.++.+. .+.++.+||.+
T Consensus 57 ~~~~-~~~-~~~vD~vFla~p~~~s~~~v~~~-~~~G~~VIDlS 97 (336)
T PRK05671 57 REVD-SFD-FSQVQLAFFAAGAAVSRSFAEKA-RAAGCSVIDLS 97 (336)
T ss_pred eeCC-hHH-hcCCCEEEEcCCHHHHHHHHHHH-HHCCCeEEECc
Confidence 1111 123 48899999999976666665554 66788899865
No 348
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=85.62 E-value=1.3 Score=40.50 Aligned_cols=28 Identities=36% Similarity=0.729 Sum_probs=24.7
Q ss_pred EEEECCcHHHHHHHHHHHHhCCCeEEEEe
Q 008516 15 VLMVGAGGIGCELLKTLALSGFQDIHIID 43 (563)
Q Consensus 15 VlvvGaGgiG~ellknLal~Gvg~I~iiD 43 (563)
|+|+|+|++|+.++-.|...|. ++++++
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~-~V~l~~ 28 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGH-DVTLVS 28 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTC-EEEEEE
T ss_pred CEEECcCHHHHHHHHHHHHCCC-ceEEEE
Confidence 7899999999999999999776 577765
No 349
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=85.60 E-value=4.7 Score=44.61 Aligned_cols=34 Identities=32% Similarity=0.537 Sum_probs=30.0
Q ss_pred cCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516 11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD 45 (563)
Q Consensus 11 ~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D 45 (563)
.+.+|+|||+|..|.+.+..|++.|.. ++|+|..
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~-V~i~e~~ 173 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQ-VVVFDRH 173 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCe-EEEEecC
Confidence 457899999999999999999999984 8888754
No 350
>PRK05717 oxidoreductase; Validated
Probab=85.48 E-value=2.6 Score=41.96 Aligned_cols=35 Identities=31% Similarity=0.551 Sum_probs=29.5
Q ss_pred HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516 10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD 45 (563)
Q Consensus 10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D 45 (563)
+++++++|.| .|+||.++++.|+..|. ++.++|.+
T Consensus 8 ~~~k~vlItG~sg~IG~~~a~~l~~~g~-~v~~~~~~ 43 (255)
T PRK05717 8 HNGRVALVTGAARGIGLGIAAWLIAEGW-QVVLADLD 43 (255)
T ss_pred cCCCEEEEeCCcchHHHHHHHHHHHcCC-EEEEEcCC
Confidence 5678899998 58999999999999996 68887743
No 351
>PRK09330 cell division protein FtsZ; Validated
Probab=85.47 E-value=3.4 Score=44.62 Aligned_cols=39 Identities=26% Similarity=0.462 Sum_probs=31.9
Q ss_pred HHHcCCcEEEECCcHHHHHHHHHHHHhCCC--eEEEEeCCc
Q 008516 8 EAIKGAKVLMVGAGGIGCELLKTLALSGFQ--DIHIIDMDT 46 (563)
Q Consensus 8 ~kL~~~~VlvvGaGgiG~ellknLal~Gvg--~I~iiD~D~ 46 (563)
..-...+|-|||.||-||-++.+|...|+. .+..++.|.
T Consensus 9 ~~~~~~~IkViGvGG~G~Nav~~m~~~~~~~v~fia~NTD~ 49 (384)
T PRK09330 9 EENQGAVIKVIGVGGGGGNAVNRMIEEGIQGVEFIAANTDA 49 (384)
T ss_pred ccccCCeEEEEEECCcHHHHHHHHHHcCCCCceEEEEeCcH
Confidence 344578999999999999999999999986 456666665
No 352
>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional
Probab=85.41 E-value=4.2 Score=41.73 Aligned_cols=31 Identities=35% Similarity=0.611 Sum_probs=26.6
Q ss_pred EEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516 15 VLMVG-AGGIGCELLKTLALSGFQDIHIIDMD 45 (563)
Q Consensus 15 VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D 45 (563)
|+|.| +|-||+++++.|+..|...+.++|..
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~g~~~v~~~~~~ 33 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNL 33 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhCCCceEEEecCC
Confidence 67887 69999999999999998778888754
No 353
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=85.34 E-value=1 Score=47.24 Aligned_cols=32 Identities=38% Similarity=0.685 Sum_probs=29.7
Q ss_pred CcEEEECCcHHHHHHHHHHHHhCCC-eEEEEeC
Q 008516 13 AKVLMVGAGGIGCELLKTLALSGFQ-DIHIIDM 44 (563)
Q Consensus 13 ~~VlvvGaGgiG~ellknLal~Gvg-~I~iiD~ 44 (563)
.||.|+|+|++|+.++-.|+.-+++ .+.|+|-
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi 33 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDI 33 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEc
Confidence 4899999999999999999999999 9999983
No 354
>PRK13243 glyoxylate reductase; Reviewed
Probab=85.32 E-value=1.1 Score=47.54 Aligned_cols=92 Identities=14% Similarity=0.147 Sum_probs=57.9
Q ss_pred HHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEec
Q 008516 9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH 88 (563)
Q Consensus 9 kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~ 88 (563)
.|.+++|.|||.|.||.++++.|...|. ++..+|...- + ... ... .+.
T Consensus 147 ~L~gktvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~-------------------~-~~~----~~~--~~~----- 194 (333)
T PRK13243 147 DVYGKTIGIIGFGRIGQAVARRAKGFGM-RILYYSRTRK-------------------P-EAE----KEL--GAE----- 194 (333)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCCC-------------------h-hhH----HHc--CCE-----
Confidence 5889999999999999999999998887 5777764210 0 000 001 111
Q ss_pred cCCCCCcchHhhcccccEEEEcc-CCHHHHHHHHHHHHh---cCCCEEEeccc
Q 008516 89 ANVKDPKFNVEFFKQFNVVLNGL-DNLDARRHVNRLCLA---ADVPLVESGTT 137 (563)
Q Consensus 89 ~~i~~~~~~~~~~~~~dvVi~al-Dn~~ar~~in~~c~~---~~~pli~~gt~ 137 (563)
.. .-.+.+++.|+|+.++ .+.+.+..+++-... .+.-+|+.+..
T Consensus 195 --~~---~l~ell~~aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lIN~aRg 242 (333)
T PRK13243 195 --YR---PLEELLRESDFVSLHVPLTKETYHMINEERLKLMKPTAILVNTARG 242 (333)
T ss_pred --ec---CHHHHHhhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECcCc
Confidence 00 1246788999998876 445667777654333 33446666543
No 355
>TIGR00065 ftsZ cell division protein FtsZ. This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.
Probab=85.21 E-value=3.7 Score=43.82 Aligned_cols=41 Identities=22% Similarity=0.394 Sum_probs=32.7
Q ss_pred HHHcCCcEEEECCcHHHHHHHHHHHHhCCCe--EEEEeCCccC
Q 008516 8 EAIKGAKVLMVGAGGIGCELLKTLALSGFQD--IHIIDMDTIE 48 (563)
Q Consensus 8 ~kL~~~~VlvvGaGgiG~ellknLal~Gvg~--I~iiD~D~Ve 48 (563)
+--.+.+|.|||.||-||-++..|.+.|+.. +..+|.|.-.
T Consensus 13 ~~~~~~~i~viGvGg~G~n~v~~l~~~~~~~~~~iainTD~~~ 55 (349)
T TIGR00065 13 QPSNKAKIKVIGVGGGGNNTVNRMLEEGVEGVEFIAINTDAQH 55 (349)
T ss_pred CcccCCeEEEEEeCCcHHHHHHHHHHcCCCceEEEEEECCHHH
Confidence 3335679999999999999999999999864 4557877633
No 356
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=85.20 E-value=2.4 Score=50.81 Aligned_cols=40 Identities=28% Similarity=0.325 Sum_probs=34.4
Q ss_pred cCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCccc
Q 008516 11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSN 51 (563)
Q Consensus 11 ~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sN 51 (563)
..+||+|||+|.-|-+.|..|++.|. +++++|...++.-|
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~Gh-~Vtv~E~~~i~gl~ 421 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRSGH-NVTAIDGLKITLLP 421 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCC-eEEEEccccccccc
Confidence 56799999999999999999999997 69999987665444
No 357
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=85.20 E-value=2.3 Score=43.85 Aligned_cols=101 Identities=19% Similarity=0.329 Sum_probs=55.7
Q ss_pred CcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEecc-C
Q 008516 13 AKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA-N 90 (563)
Q Consensus 13 ~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~-~ 90 (563)
+||||+| .|-+|..+.+.|...|.. +.-++.. .-|+. ..+.+.+.+.+..|++-|..-.- +
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~~-v~~~~r~--------------~~dl~--d~~~~~~~~~~~~pd~Vin~aa~~~ 63 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGYE-VIATSRS--------------DLDLT--DPEAVAKLLEAFKPDVVINCAAYTN 63 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSEE-EEEESTT--------------CS-TT--SHHHHHHHHHHH--SEEEE------
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCCE-EEEeCch--------------hcCCC--CHHHHHHHHHHhCCCeEeccceeec
Confidence 4899999 599999999999987753 3333333 11222 34566777777777755543210 0
Q ss_pred CCCCc-chHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEeccccc
Q 008516 91 VKDPK-FNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGF 139 (563)
Q Consensus 91 i~~~~-~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~G~ 139 (563)
+..-. .....+ .-|..+-..+.+.|...+.++|.-.|...
T Consensus 64 ~~~ce~~p~~a~---------~iN~~~~~~la~~~~~~~~~li~~STd~V 104 (286)
T PF04321_consen 64 VDACEKNPEEAY---------AINVDATKNLAEACKERGARLIHISTDYV 104 (286)
T ss_dssp HHHHHHSHHHHH---------HHHTHHHHHHHHHHHHCT-EEEEEEEGGG
T ss_pred HHhhhhChhhhH---------HHhhHHHHHHHHHHHHcCCcEEEeeccEE
Confidence 10000 000000 01334445777899999999998877653
No 358
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=85.19 E-value=2.8 Score=44.60 Aligned_cols=100 Identities=16% Similarity=0.233 Sum_probs=57.7
Q ss_pred CCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHH----HHhhCCCceEEE
Q 008516 12 GAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDA----VLKFRPQMSITA 86 (563)
Q Consensus 12 ~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~----l~~~np~v~I~~ 86 (563)
..||+|+| .|-+|.++++.|.....-+|+.+... .++.|++-..+..-. +..-...+.+..
T Consensus 3 ~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s--------------~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~ 68 (349)
T PRK08664 3 KLKVGILGATGMVGQRFVQLLANHPWFEVTALAAS--------------ERSAGKTYGEAVRWQLDGPIPEEVADMEVVS 68 (349)
T ss_pred CcEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcC--------------hhhcCCcccccccccccccccccccceEEEe
Confidence 47999998 79999999999997666677765211 223343321110000 000000011211
Q ss_pred eccCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEec
Q 008516 87 HHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESG 135 (563)
Q Consensus 87 ~~~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~g 135 (563)
. +.+-+.+.|+|+.|+..-.+..++ ......++.+|+.+
T Consensus 69 ~---------~~~~~~~~DvVf~a~p~~~s~~~~-~~~~~~G~~vIDls 107 (349)
T PRK08664 69 T---------DPEAVDDVDIVFSALPSDVAGEVE-EEFAKAGKPVFSNA 107 (349)
T ss_pred C---------CHHHhcCCCEEEEeCChhHHHHHH-HHHHHCCCEEEECC
Confidence 1 122347899999999886666666 44466788887754
No 359
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.17 E-value=0.99 Score=50.04 Aligned_cols=41 Identities=27% Similarity=0.318 Sum_probs=36.0
Q ss_pred CHHHHHHHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516 3 SERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM 44 (563)
Q Consensus 3 ~~~~q~kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~ 44 (563)
|-+....+..++|+|+|+|+.|..+++.|...|. .+++.|.
T Consensus 6 ~~~~~~~~~~~~v~v~G~G~sG~a~a~~L~~~G~-~V~~~D~ 46 (473)
T PRK00141 6 PLSALPQELSGRVLVAGAGVSGRGIAAMLSELGC-DVVVADD 46 (473)
T ss_pred hhhhcccccCCeEEEEccCHHHHHHHHHHHHCCC-EEEEECC
Confidence 4556677888999999999999999999999998 8888874
No 360
>PRK07890 short chain dehydrogenase; Provisional
Probab=85.15 E-value=3.3 Score=41.01 Aligned_cols=34 Identities=29% Similarity=0.458 Sum_probs=29.0
Q ss_pred HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516 10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM 44 (563)
Q Consensus 10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~ 44 (563)
|.+++++|.| .|+||..+++.|+.-|. ++.++|.
T Consensus 3 l~~k~vlItGa~~~IG~~la~~l~~~G~-~V~~~~r 37 (258)
T PRK07890 3 LKGKVVVVSGVGPGLGRTLAVRAARAGA-DVVLAAR 37 (258)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHcCC-EEEEEeC
Confidence 5678899998 58999999999999997 6778763
No 361
>PLN02503 fatty acyl-CoA reductase 2
Probab=85.12 E-value=6.8 Score=44.92 Aligned_cols=132 Identities=17% Similarity=0.186 Sum_probs=75.1
Q ss_pred HHHHHHcCCcEEEECC-cHHHHHHHHHHHHhC--CCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCC-
Q 008516 5 RQLEAIKGAKVLMVGA-GGIGCELLKTLALSG--FQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRP- 80 (563)
Q Consensus 5 ~~q~kL~~~~VlvvGa-GgiG~ellknLal~G--vg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np- 80 (563)
..++-+++++|+|-|+ |-+|..+++.|.+.+ +++|.++....=..+-..|.. ..+ +...+-+.+++.+|
T Consensus 112 ~I~~f~~~k~VlVTGaTGFLGk~LlekLLr~~~~v~kIy~LvR~k~~~~a~eRl~----~~l---~~~~lf~~l~~~~g~ 184 (605)
T PLN02503 112 GIAEFLRGKNFLITGATGFLAKVLIEKILRTNPDVGKIYLLIKAKDKEAAIERLK----NEV---IDAELFKCLQETHGK 184 (605)
T ss_pred chhhhhcCCEEEEcCCchHHHHHHHHHHHHhCCCCcEEEEEEecCCchhHHHHHH----HHH---hhhhhHHHHHHhcCc
Confidence 3567789999999996 889999999999764 678887642211111111100 000 00011233444444
Q ss_pred ------CceEEEeccCCCCCcc------hHhhcccccEEEEccCC------HH--------HHHHHHHHHHhcC--CCEE
Q 008516 81 ------QMSITAHHANVKDPKF------NVEFFKQFNVVLNGLDN------LD--------ARRHVNRLCLAAD--VPLV 132 (563)
Q Consensus 81 ------~v~I~~~~~~i~~~~~------~~~~~~~~dvVi~alDn------~~--------ar~~in~~c~~~~--~pli 132 (563)
.-+|+++.+++++..+ -..+.++.|+||.+... .+ .-..+-++|...+ ..++
T Consensus 185 ~~~~~~~~Ki~~v~GDl~d~~LGLs~~~~~~L~~~vDiVIH~AA~v~f~~~~~~a~~vNV~GT~nLLelA~~~~~lk~fV 264 (605)
T PLN02503 185 SYQSFMLSKLVPVVGNVCESNLGLEPDLADEIAKEVDVIINSAANTTFDERYDVAIDINTRGPCHLMSFAKKCKKLKLFL 264 (605)
T ss_pred cccccccccEEEEEeeCCCcccCCCHHHHHHHHhcCCEEEECccccccccCHHHHHHHHHHHHHHHHHHHHHcCCCCeEE
Confidence 2478888888876532 12345679999996322 11 1233445555543 4678
Q ss_pred EeccccceeeE
Q 008516 133 ESGTTGFLGQV 143 (563)
Q Consensus 133 ~~gt~G~~G~v 143 (563)
..+|...+|..
T Consensus 265 ~vSTayVyG~~ 275 (605)
T PLN02503 265 QVSTAYVNGQR 275 (605)
T ss_pred EccCceeecCC
Confidence 88776555543
No 362
>PRK08278 short chain dehydrogenase; Provisional
Probab=85.05 E-value=4 Score=41.29 Aligned_cols=35 Identities=26% Similarity=0.446 Sum_probs=29.5
Q ss_pred HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516 10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD 45 (563)
Q Consensus 10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D 45 (563)
+++++++|.| .||||.++++.|+..|. ++.++|..
T Consensus 4 ~~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~ 39 (273)
T PRK08278 4 LSGKTLFITGASRGIGLAIALRAARDGA-NIVIAAKT 39 (273)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEecc
Confidence 5677899998 69999999999999997 67777644
No 363
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=84.96 E-value=1.3 Score=46.28 Aligned_cols=32 Identities=38% Similarity=0.624 Sum_probs=29.0
Q ss_pred CcEEEECCcHHHHHHHHHHHHhCC-CeEEEEeC
Q 008516 13 AKVLMVGAGGIGCELLKTLALSGF-QDIHIIDM 44 (563)
Q Consensus 13 ~~VlvvGaGgiG~ellknLal~Gv-g~I~iiD~ 44 (563)
.||.|||+|.+|+.++-.|+..|+ .++.++|.
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~ 33 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDI 33 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEEC
Confidence 379999999999999999999996 67999984
No 364
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=84.92 E-value=3.6 Score=41.04 Aligned_cols=31 Identities=26% Similarity=0.400 Sum_probs=26.0
Q ss_pred CcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516 13 AKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM 44 (563)
Q Consensus 13 ~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~ 44 (563)
++++|.| .||||.++++.|+..|. ++.++|.
T Consensus 1 m~vlItGas~gIG~aia~~l~~~G~-~V~~~~r 32 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKGA-RVVISSR 32 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHcCC-EEEEEeC
Confidence 3789998 58999999999999997 5777663
No 365
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=84.82 E-value=2.4 Score=41.87 Aligned_cols=36 Identities=25% Similarity=0.365 Sum_probs=30.3
Q ss_pred HcCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeCCc
Q 008516 10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMDT 46 (563)
Q Consensus 10 L~~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~D~ 46 (563)
+.+++++|.|+ |++|..+++.|+..|. ++.++|.+.
T Consensus 6 ~~~k~vlItGas~~iG~~la~~l~~~G~-~v~~~~~~~ 42 (252)
T PRK08220 6 FSGKTVWVTGAAQGIGYAVALAFVEAGA-KVIGFDQAF 42 (252)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEecch
Confidence 66788999985 7899999999999996 677777654
No 366
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=84.81 E-value=4.7 Score=41.24 Aligned_cols=97 Identities=22% Similarity=0.296 Sum_probs=58.5
Q ss_pred CcEEEEC-CcHHHHHHHHHHHH-hCCCeEEEEe-CCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCC-CceEEEec
Q 008516 13 AKVLMVG-AGGIGCELLKTLAL-SGFQDIHIID-MDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRP-QMSITAHH 88 (563)
Q Consensus 13 ~~VlvvG-aGgiG~ellknLal-~Gvg~I~iiD-~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np-~v~I~~~~ 88 (563)
.||.|+| +|.+|..+++.+.. .++.-+-++| .+.-. +|+. +++ +....+ .+.+ +
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~--------------~~~~----~~~-~~~~~~~gv~~--~- 59 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSL--------------QGTD----AGE-LAGIGKVGVPV--T- 59 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccc--------------cCCC----HHH-hcCcCcCCcee--e-
Confidence 4899999 59999999999985 4665556666 22100 1211 111 111111 1111 1
Q ss_pred cCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEeccccc
Q 008516 89 ANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGF 139 (563)
Q Consensus 89 ~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~G~ 139 (563)
.++ ++....+|+||+++ ++++-...-..|.++++|++-+-+ |+
T Consensus 60 ~d~------~~l~~~~DvVIdfT-~p~~~~~~~~~al~~g~~vVigtt-g~ 102 (266)
T TIGR00036 60 DDL------EAVETDPDVLIDFT-TPEGVLNHLKFALEHGVRLVVGTT-GF 102 (266)
T ss_pred CCH------HHhcCCCCEEEECC-ChHHHHHHHHHHHHCCCCEEEECC-CC
Confidence 111 12234689999998 567777778889999999997665 54
No 367
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=84.79 E-value=3.5 Score=47.94 Aligned_cols=33 Identities=33% Similarity=0.555 Sum_probs=27.8
Q ss_pred cCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516 11 KGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM 44 (563)
Q Consensus 11 ~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~ 44 (563)
.+++++|.| .||||.++++.|+..|. ++.++|.
T Consensus 413 ~gkvvLVTGasggIG~aiA~~La~~Ga-~Vvi~~r 446 (676)
T TIGR02632 413 ARRVAFVTGGAGGIGRETARRLAAEGA-HVVLADL 446 (676)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhCCC-EEEEEeC
Confidence 457788988 58999999999999997 6777764
No 368
>PLN02852 ferredoxin-NADP+ reductase
Probab=84.76 E-value=4.8 Score=44.97 Aligned_cols=42 Identities=26% Similarity=0.279 Sum_probs=33.0
Q ss_pred cCCcEEEECCcHHHHHHHHHHHH--hCCCeEEEEeCCccCcccCcc
Q 008516 11 KGAKVLMVGAGGIGCELLKTLAL--SGFQDIHIIDMDTIEVSNLNR 54 (563)
Q Consensus 11 ~~~~VlvvGaGgiG~ellknLal--~Gvg~I~iiD~D~Ve~sNLnR 54 (563)
...+|+|||+|.-|.+.+..|++ .|. +++|+|... .+-.+.|
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~-~Vtv~E~~p-~pgGlvr 68 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGA-RVDIIERLP-TPFGLVR 68 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCC-eEEEEecCC-CCcceEe
Confidence 35789999999999999999997 564 799999665 2344545
No 369
>PRK08818 prephenate dehydrogenase; Provisional
Probab=84.76 E-value=3.7 Score=44.15 Aligned_cols=35 Identities=26% Similarity=0.164 Sum_probs=28.2
Q ss_pred HcCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeC
Q 008516 10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDM 44 (563)
Q Consensus 10 L~~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~ 44 (563)
+.+.+|.|||. |.+|..+++.|....-.+|+.+|.
T Consensus 2 ~~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~ 37 (370)
T PRK08818 2 IAQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDP 37 (370)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcC
Confidence 45789999999 999999999998653336777775
No 370
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=84.73 E-value=1.3 Score=46.90 Aligned_cols=88 Identities=22% Similarity=0.237 Sum_probs=57.1
Q ss_pred HHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEec
Q 008516 9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH 88 (563)
Q Consensus 9 kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~ 88 (563)
.|++++|.|||+|.+|..+++.|...|. ++..+|...- +.. ..+ .
T Consensus 143 ~l~g~~VgIIG~G~IG~~vA~~L~~~G~-~V~~~d~~~~-------------------~~~---~~~-------~----- 187 (330)
T PRK12480 143 PVKNMTVAIIGTGRIGAATAKIYAGFGA-TITAYDAYPN-------------------KDL---DFL-------T----- 187 (330)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCChh-------------------Hhh---hhh-------h-----
Confidence 5788999999999999999999998887 6788774320 000 000 0
Q ss_pred cCCCCCcchHhhcccccEEEEccCC-HHHHHHHHHHHHh---cCCCEEEec
Q 008516 89 ANVKDPKFNVEFFKQFNVVLNGLDN-LDARRHVNRLCLA---ADVPLVESG 135 (563)
Q Consensus 89 ~~i~~~~~~~~~~~~~dvVi~alDn-~~ar~~in~~c~~---~~~pli~~g 135 (563)
... .-.+.++++|+|+.++-. .+.+..+++-... .+..+|+++
T Consensus 188 --~~~--~l~ell~~aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~a 234 (330)
T PRK12480 188 --YKD--SVKEAIKDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAA 234 (330)
T ss_pred --ccC--CHHHHHhcCCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcC
Confidence 010 124678899999998754 3456666654433 244556654
No 371
>PRK15076 alpha-galactosidase; Provisional
Probab=84.71 E-value=3 Score=45.82 Aligned_cols=108 Identities=18% Similarity=0.260 Sum_probs=60.8
Q ss_pred CcEEEECCcHHHHHHHH--HHH-HhCC--CeEEEEeCCccCcccCccccCCCCCCCCchHHHH-HHHHHHhhCCCceEEE
Q 008516 13 AKVLMVGAGGIGCELLK--TLA-LSGF--QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKV-ARDAVLKFRPQMSITA 86 (563)
Q Consensus 13 ~~VlvvGaGgiG~ellk--nLa-l~Gv--g~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~v-a~~~l~~~np~v~I~~ 86 (563)
.||.|||+|++|...+- .++ ..++ ..++++|-|. .|+ .++.+ +.+.+....+..+|+.
T Consensus 2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~------er~----------~~~~~l~~~~~~~~~~~~~i~~ 65 (431)
T PRK15076 2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDP------ERL----------EESEIVARKLAESLGASAKITA 65 (431)
T ss_pred cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCH------HHH----------HHHHHHHHHHHHhcCCCeEEEE
Confidence 48999999999855443 665 3333 3799998443 010 00121 3333444455566664
Q ss_pred eccCCCCCcchHhhcccccEEEEccCC--HHHHHHHH-HHHHhcCCCEEEeccccceeeE
Q 008516 87 HHANVKDPKFNVEFFKQFNVVLNGLDN--LDARRHVN-RLCLAADVPLVESGTTGFLGQV 143 (563)
Q Consensus 87 ~~~~i~~~~~~~~~~~~~dvVi~alDn--~~ar~~in-~~c~~~~~pli~~gt~G~~G~v 143 (563)
..+. .+-++++|+|+.+.-. .++++..+ ++..++|+----.-+.|..|-.
T Consensus 66 ttD~-------~eal~dADfVv~ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~ 118 (431)
T PRK15076 66 TTDR-------REALQGADYVINAIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIM 118 (431)
T ss_pred ECCH-------HHHhCCCCEEeEeeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchh
Confidence 3221 3557899999997644 34455344 5677888741112455655533
No 372
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=84.66 E-value=1.1 Score=47.21 Aligned_cols=35 Identities=23% Similarity=0.262 Sum_probs=31.4
Q ss_pred CCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCcc
Q 008516 12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTI 47 (563)
Q Consensus 12 ~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~V 47 (563)
...|+|||+|.+|+.+|..|++.|. +++|+|.+..
T Consensus 3 ~~dv~IIGgGi~G~s~A~~L~~~g~-~V~lie~~~~ 37 (376)
T PRK11259 3 RYDVIVIGLGSMGSAAGYYLARRGL-RVLGLDRFMP 37 (376)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCC-eEEEEecccC
Confidence 4579999999999999999999996 7999998764
No 373
>PRK06914 short chain dehydrogenase; Provisional
Probab=84.65 E-value=3.6 Score=41.45 Aligned_cols=34 Identities=18% Similarity=0.237 Sum_probs=27.2
Q ss_pred cCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516 11 KGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD 45 (563)
Q Consensus 11 ~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D 45 (563)
++++++|.| .|++|..+++.|+..|. ++.+++.+
T Consensus 2 ~~k~~lItGasg~iG~~la~~l~~~G~-~V~~~~r~ 36 (280)
T PRK06914 2 NKKIAIVTGASSGFGLLTTLELAKKGY-LVIATMRN 36 (280)
T ss_pred CCCEEEEECCCchHHHHHHHHHHhCCC-EEEEEeCC
Confidence 456788888 58999999999999986 56776644
No 374
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=84.64 E-value=1.3 Score=46.76 Aligned_cols=36 Identities=36% Similarity=0.429 Sum_probs=31.2
Q ss_pred HHHHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEe
Q 008516 7 LEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIID 43 (563)
Q Consensus 7 q~kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD 43 (563)
.+.|++++|.|||+|.+|..++++|..+|+ ++.+.+
T Consensus 12 ~~~L~gktIgIIG~GsmG~AlA~~L~~sG~-~Vvv~~ 47 (330)
T PRK05479 12 LSLIKGKKVAIIGYGSQGHAHALNLRDSGV-DVVVGL 47 (330)
T ss_pred hhhhCCCEEEEEeeHHHHHHHHHHHHHCCC-EEEEEE
Confidence 567899999999999999999999999998 455543
No 375
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=84.60 E-value=1.2 Score=47.75 Aligned_cols=35 Identities=23% Similarity=0.452 Sum_probs=31.4
Q ss_pred HcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516 10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD 45 (563)
Q Consensus 10 L~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D 45 (563)
+...+|+|+|+|++|..+++.+..+|. +++++|.+
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~ 199 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMANGLGA-TVTILDIN 199 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECC
Confidence 466889999999999999999999998 69999854
No 376
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=84.59 E-value=5 Score=42.73 Aligned_cols=92 Identities=15% Similarity=0.295 Sum_probs=57.3
Q ss_pred cCCcEEEEC-CcHHHHHHHHHHHHhCCC--eEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEe
Q 008516 11 KGAKVLMVG-AGGIGCELLKTLALSGFQ--DIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH 87 (563)
Q Consensus 11 ~~~~VlvvG-aGgiG~ellknLal~Gvg--~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~ 87 (563)
...||.|+| .|.+|.|+++.|...+.- ++..+. ..+..|+.=.. ...++.+.
T Consensus 6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~la---------------s~rsaGk~~~~--------~~~~~~v~-- 60 (344)
T PLN02383 6 NGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLA---------------SARSAGKKVTF--------EGRDYTVE-- 60 (344)
T ss_pred CCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEE---------------ccCCCCCeeee--------cCceeEEE--
Confidence 356899999 578899999999986654 444432 22233432211 01111111
Q ss_pred ccCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEec
Q 008516 88 HANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESG 135 (563)
Q Consensus 88 ~~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~g 135 (563)
.+ +.+-+.++|+|+.|+.+-.++.+.-+. .+.+..+||.+
T Consensus 61 --~~-----~~~~~~~~D~vf~a~p~~~s~~~~~~~-~~~g~~VIDlS 100 (344)
T PLN02383 61 --EL-----TEDSFDGVDIALFSAGGSISKKFGPIA-VDKGAVVVDNS 100 (344)
T ss_pred --eC-----CHHHHcCCCEEEECCCcHHHHHHHHHH-HhCCCEEEECC
Confidence 11 122347899999999988777777654 45788899865
No 377
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=84.58 E-value=4.3 Score=43.17 Aligned_cols=39 Identities=13% Similarity=0.204 Sum_probs=29.4
Q ss_pred HhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEeccc
Q 008516 98 VEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTT 137 (563)
Q Consensus 98 ~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~ 137 (563)
.+.+.+.|+|++++.....+.. ...+.++|+++|+.+..
T Consensus 73 ~el~~~vDVVIdaT~~~~~~e~-a~~~~~aGk~VI~~~~~ 111 (341)
T PRK04207 73 EDLLEKADIVVDATPGGVGAKN-KELYEKAGVKAIFQGGE 111 (341)
T ss_pred hHhhccCCEEEECCCchhhHHH-HHHHHHCCCEEEEcCCC
Confidence 3456789999999987655554 45778889999998753
No 378
>TIGR01179 galE UDP-glucose-4-epimerase. This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.
Probab=84.56 E-value=6.8 Score=39.93 Aligned_cols=29 Identities=38% Similarity=0.700 Sum_probs=24.4
Q ss_pred cEEEEC-CcHHHHHHHHHHHHhCCCeEEEEe
Q 008516 14 KVLMVG-AGGIGCELLKTLALSGFQDIHIID 43 (563)
Q Consensus 14 ~VlvvG-aGgiG~ellknLal~Gvg~I~iiD 43 (563)
+|+|.| .|.+|..+++.|...|. +++++|
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~g~-~V~~~~ 30 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLESGH-EVVVLD 30 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhCCC-eEEEEe
Confidence 688997 69999999999999997 466665
No 379
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=84.49 E-value=2.7 Score=43.83 Aligned_cols=68 Identities=21% Similarity=0.293 Sum_probs=45.5
Q ss_pred EECCcHHHHHHHHHHHHhCC-CeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhC----CCceEEEeccCC
Q 008516 17 MVGAGGIGCELLKTLALSGF-QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFR----PQMSITAHHANV 91 (563)
Q Consensus 17 vvGaGgiG~ellknLal~Gv-g~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~n----p~v~I~~~~~~i 91 (563)
|||+|.+|+.++-.|++.|+ ++|.|+|- -+.|++..+.-+.+.. .+++|.. +
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di-------------------~~~~~~g~a~Dl~~~~~~~~~~~~i~~--~-- 57 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLIDI-------------------NKDKAEGEAMDLQHAASFLPTPKKIRS--G-- 57 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEeC-------------------CCChhhHHHHHHHHhhcccCCCeEEec--C--
Confidence 68999999999999999998 57999873 2234444444444432 2233331 1
Q ss_pred CCCcchHhhcccccEEEEccC
Q 008516 92 KDPKFNVEFFKQFNVVLNGLD 112 (563)
Q Consensus 92 ~~~~~~~~~~~~~dvVi~alD 112 (563)
+.+-++++|+||.+..
T Consensus 58 -----~~~~~~daDivVitag 73 (299)
T TIGR01771 58 -----DYSDCKDADLVVITAG 73 (299)
T ss_pred -----CHHHHCCCCEEEECCC
Confidence 2356899999998654
No 380
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=84.48 E-value=3.4 Score=43.29 Aligned_cols=33 Identities=30% Similarity=0.445 Sum_probs=29.4
Q ss_pred CcEEEECC-cHHHHHHHHHHHHhCCC-eEEEEeCC
Q 008516 13 AKVLMVGA-GGIGCELLKTLALSGFQ-DIHIIDMD 45 (563)
Q Consensus 13 ~~VlvvGa-GgiG~ellknLal~Gvg-~I~iiD~D 45 (563)
.||.|+|+ |.+|..++..|+..|.. +++++|.+
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~ 35 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRP 35 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECc
Confidence 48999998 99999999999999974 79999963
No 381
>PRK06128 oxidoreductase; Provisional
Probab=84.34 E-value=4.2 Score=41.76 Aligned_cols=34 Identities=32% Similarity=0.481 Sum_probs=28.3
Q ss_pred HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEe
Q 008516 9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIID 43 (563)
Q Consensus 9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD 43 (563)
+|++++++|.| .||||.++++.|+..|. ++.+++
T Consensus 52 ~l~~k~vlITGas~gIG~~~a~~l~~~G~-~V~i~~ 86 (300)
T PRK06128 52 RLQGRKALITGADSGIGRATAIAFAREGA-DIALNY 86 (300)
T ss_pred ccCCCEEEEecCCCcHHHHHHHHHHHcCC-EEEEEe
Confidence 57788999998 59999999999999997 455543
No 382
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=84.32 E-value=8.6 Score=40.16 Aligned_cols=114 Identities=18% Similarity=0.310 Sum_probs=65.2
Q ss_pred CcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCC------CCCCCchHHHHHHHHHHhhCCCceEE
Q 008516 13 AKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFR------QSHVGQSKAKVARDAVLKFRPQMSIT 85 (563)
Q Consensus 13 ~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~------~~diGk~Ka~va~~~l~~~np~v~I~ 85 (563)
++|||.| +|=|||..++.|...|. .+.++|+ .+|=+|..+-+ ..|+.- .+.+.+.+.+.+|+.-|+
T Consensus 1 ~~iLVtGGAGYIGSHtv~~Ll~~G~-~vvV~DN----L~~g~~~~v~~~~~~f~~gDi~D--~~~L~~vf~~~~idaViH 73 (329)
T COG1087 1 MKVLVTGGAGYIGSHTVRQLLKTGH-EVVVLDN----LSNGHKIALLKLQFKFYEGDLLD--RALLTAVFEENKIDAVVH 73 (329)
T ss_pred CeEEEecCcchhHHHHHHHHHHCCC-eEEEEec----CCCCCHHHhhhccCceEEecccc--HHHHHHHHHhcCCCEEEE
Confidence 4788885 99999999999999997 5777773 34444444332 223332 234555555666654443
Q ss_pred Eecc-CCCCC-cchHhhcccccEEEEccCCHHHHHHHHHHHHhcCC-CEEEeccccceee
Q 008516 86 AHHA-NVKDP-KFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADV-PLVESGTTGFLGQ 142 (563)
Q Consensus 86 ~~~~-~i~~~-~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~-pli~~gt~G~~G~ 142 (563)
.--. .+.|+ ....+++.+ |+---.-+-+.|+++++ .+|.|.|...+|.
T Consensus 74 FAa~~~VgESv~~Pl~Yy~N---------Nv~gTl~Ll~am~~~gv~~~vFSStAavYG~ 124 (329)
T COG1087 74 FAASISVGESVQNPLKYYDN---------NVVGTLNLIEAMLQTGVKKFIFSSTAAVYGE 124 (329)
T ss_pred CccccccchhhhCHHHHHhh---------chHhHHHHHHHHHHhCCCEEEEecchhhcCC
Confidence 2111 11111 112334432 33333334455666665 6888988888775
No 383
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=84.29 E-value=2.8 Score=45.71 Aligned_cols=35 Identities=26% Similarity=0.322 Sum_probs=30.6
Q ss_pred HcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516 10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD 45 (563)
Q Consensus 10 L~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D 45 (563)
+++++|+|+|.|++|-.+++.|+..|. .+++.|.+
T Consensus 3 ~~~k~v~v~G~g~~G~s~a~~l~~~G~-~V~~~d~~ 37 (447)
T PRK02472 3 YQNKKVLVLGLAKSGYAAAKLLHKLGA-NVTVNDGK 37 (447)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEEcCC
Confidence 467889999999999999999999997 68887744
No 384
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=84.24 E-value=2.2 Score=42.37 Aligned_cols=36 Identities=28% Similarity=0.508 Sum_probs=30.5
Q ss_pred HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCc
Q 008516 10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDT 46 (563)
Q Consensus 10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~ 46 (563)
+.+++++|.| .|+||.++++.|+..|. ++.++|.+.
T Consensus 4 l~~~~vlItGas~~iG~~ia~~l~~~G~-~v~~~~r~~ 40 (257)
T PRK07067 4 LQGKVALLTGAASGIGEAVAERYLAEGA-RVVIADIKP 40 (257)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEcCCH
Confidence 5678899998 59999999999999997 577877654
No 385
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=83.97 E-value=3.6 Score=46.59 Aligned_cols=34 Identities=24% Similarity=0.429 Sum_probs=30.4
Q ss_pred cCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516 11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD 45 (563)
Q Consensus 11 ~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D 45 (563)
.+.+|+|||+|.+|-..+..|++.|. +++++|..
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~~G~-~V~v~e~~ 169 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRRMGH-AVTIFEAG 169 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEecC
Confidence 46789999999999999999999998 59999854
No 386
>PRK08374 homoserine dehydrogenase; Provisional
Probab=83.93 E-value=6.4 Score=41.77 Aligned_cols=109 Identities=17% Similarity=0.226 Sum_probs=60.0
Q ss_pred CCcEEEECCcHHHHHHHHHHHH--------hCCC--eEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 008516 12 GAKVLMVGAGGIGCELLKTLAL--------SGFQ--DIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ 81 (563)
Q Consensus 12 ~~~VlvvGaGgiG~ellknLal--------~Gvg--~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~ 81 (563)
..+|.|+|+|.+|..+++.|.. .|+. -+.+.|.+ -.+|.++.+.-.+. .+..++...
T Consensus 2 ~i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~---------~~~~~~~Gid~~~l---~~~~~~~~~- 68 (336)
T PRK08374 2 EVKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTS---------GTIWLPEDIDLREA---KEVKENFGK- 68 (336)
T ss_pred eeEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCC---------ccccCCCCCChHHH---HHhhhccCc-
Confidence 4689999999999999999876 6743 23344532 12344444433332 222222111
Q ss_pred ceEEEeccCCC-CCcchHhhc--ccccEEEEccCCHHHHHHHHHHHHhcCCCEEEecc
Q 008516 82 MSITAHHANVK-DPKFNVEFF--KQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGT 136 (563)
Q Consensus 82 v~I~~~~~~i~-~~~~~~~~~--~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt 136 (563)
+..+..+.. .....++++ ...|+||+++....++.+ -..+...++++|-+..
T Consensus 69 --~~~~~~~~~~~~~~~~ell~~~~~DVvVd~t~~~~a~~~-~~~al~~G~~VVtanK 123 (336)
T PRK08374 69 --LSNWGNDYEVYNFSPEEIVEEIDADIVVDVTNDKNAHEW-HLEALKEGKSVVTSNK 123 (336)
T ss_pred --hhhccccccccCCCHHHHHhcCCCCEEEECCCcHHHHHH-HHHHHhhCCcEEECCH
Confidence 111110000 001123555 478999999976555544 4566788999887653
No 387
>PLN02928 oxidoreductase family protein
Probab=83.91 E-value=1.2 Score=47.35 Aligned_cols=35 Identities=31% Similarity=0.472 Sum_probs=30.9
Q ss_pred HHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516 9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM 44 (563)
Q Consensus 9 kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~ 44 (563)
.|.+++|.|||.|.||.++++.|...|. ++..+|.
T Consensus 156 ~l~gktvGIiG~G~IG~~vA~~l~afG~-~V~~~dr 190 (347)
T PLN02928 156 TLFGKTVFILGYGAIGIELAKRLRPFGV-KLLATRR 190 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHhhCCC-EEEEECC
Confidence 4788999999999999999999998887 6777764
No 388
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=83.90 E-value=3.9 Score=40.73 Aligned_cols=35 Identities=29% Similarity=0.452 Sum_probs=29.0
Q ss_pred HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516 9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM 44 (563)
Q Consensus 9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~ 44 (563)
++.+++|+|.| .||||..+++.|+..|. ++.+++.
T Consensus 12 ~l~~k~vlItGas~gIG~~ia~~l~~~G~-~v~~~~~ 47 (258)
T PRK06935 12 SLDGKVAIVTGGNTGLGQGYAVALAKAGA-DIIITTH 47 (258)
T ss_pred cCCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence 46788999998 58999999999999997 4666654
No 389
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=83.89 E-value=5.9 Score=41.34 Aligned_cols=39 Identities=23% Similarity=0.460 Sum_probs=31.2
Q ss_pred CcEEEECCcHHHHHHHHHHHHhCCC--eEEEEeCCccCccc
Q 008516 13 AKVLMVGAGGIGCELLKTLALSGFQ--DIHIIDMDTIEVSN 51 (563)
Q Consensus 13 ~~VlvvGaGgiG~ellknLal~Gvg--~I~iiD~D~Ve~sN 51 (563)
.+|.|||.||-||-++..|.+.|+. .+..+|.|.-.+..
T Consensus 1 ~~i~viGvGg~G~n~v~~l~~~~~~~~~~~a~ntD~~~L~~ 41 (304)
T cd02201 1 AKIKVIGVGGGGGNAVNRMIESGLEGVEFIAANTDAQALAK 41 (304)
T ss_pred CeEEEEEeCCcHHHHHHHHHHcCCCCceEEEEECCHHHHhc
Confidence 3789999999999999999999986 45667777644443
No 390
>PRK07454 short chain dehydrogenase; Provisional
Probab=83.88 E-value=5.2 Score=39.27 Aligned_cols=32 Identities=28% Similarity=0.523 Sum_probs=26.9
Q ss_pred CCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeC
Q 008516 12 GAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDM 44 (563)
Q Consensus 12 ~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~ 44 (563)
.++++|.|+ |++|..+++.|+..|. ++.++|.
T Consensus 6 ~k~vlItG~sg~iG~~la~~l~~~G~-~V~~~~r 38 (241)
T PRK07454 6 MPRALITGASSGIGKATALAFAKAGW-DLALVAR 38 (241)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence 357889984 9999999999999997 6887764
No 391
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=83.86 E-value=4 Score=40.98 Aligned_cols=33 Identities=15% Similarity=0.338 Sum_probs=28.2
Q ss_pred HcCCcEEEECC---cHHHHHHHHHHHHhCCCeEEEEe
Q 008516 10 IKGAKVLMVGA---GGIGCELLKTLALSGFQDIHIID 43 (563)
Q Consensus 10 L~~~~VlvvGa---GgiG~ellknLal~Gvg~I~iiD 43 (563)
+.++.++|.|+ +|||.++++.|+..|. ++.+++
T Consensus 5 ~~~k~~lItGa~~s~GIG~aia~~la~~G~-~v~~~~ 40 (257)
T PRK08594 5 LEGKTYVVMGVANKRSIAWGIARSLHNAGA-KLVFTY 40 (257)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEec
Confidence 56788999997 5999999999999997 576665
No 392
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=83.83 E-value=1.6 Score=45.05 Aligned_cols=35 Identities=26% Similarity=0.429 Sum_probs=31.4
Q ss_pred cEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCc
Q 008516 14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEV 49 (563)
Q Consensus 14 ~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~ 49 (563)
.|+|||+|-+|+.+|-.|++.|. +++|+|.+.+.-
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G~-~V~l~e~~~~~~ 35 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRGH-SVTLLERGDIGS 35 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTTS-EEEEEESSSTTS
T ss_pred CEEEECcCHHHHHHHHHHHHCCC-eEEEEeeccccc
Confidence 48999999999999999999999 899999885543
No 393
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=83.82 E-value=14 Score=36.24 Aligned_cols=94 Identities=20% Similarity=0.335 Sum_probs=57.9
Q ss_pred EEEECC-cHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccCCCC
Q 008516 15 VLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKD 93 (563)
Q Consensus 15 VlvvGa-GgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~i~~ 93 (563)
|+|+|+ |.+|..++..|...|+. ++++ .|.. ++. ..+.++. +++++. ..+..+
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~-V~~l---------------~R~~-----~~~-~~~~l~~--~g~~vv--~~d~~~ 54 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFS-VRAL---------------VRDP-----SSD-RAQQLQA--LGAEVV--EADYDD 54 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGC-EEEE---------------ESSS-----HHH-HHHHHHH--TTTEEE--ES-TT-
T ss_pred CEEECCccHHHHHHHHHHHhCCCC-cEEE---------------Eecc-----chh-hhhhhhc--ccceEe--ecccCC
Confidence 789996 99999999999997764 5543 2222 111 2233333 355553 444443
Q ss_pred CcchHhhcccccEEEEccC---C--HHHHHHHHHHHHhcCCCEEEe
Q 008516 94 PKFNVEFFKQFNVVLNGLD---N--LDARRHVNRLCLAADVPLVES 134 (563)
Q Consensus 94 ~~~~~~~~~~~dvVi~alD---n--~~ar~~in~~c~~~~~pli~~ 134 (563)
...-.+.+++.|.|+.++. . .+....+-+.|.+.++..+--
T Consensus 55 ~~~l~~al~g~d~v~~~~~~~~~~~~~~~~~li~Aa~~agVk~~v~ 100 (233)
T PF05368_consen 55 PESLVAALKGVDAVFSVTPPSHPSELEQQKNLIDAAKAAGVKHFVP 100 (233)
T ss_dssp HHHHHHHHTTCSEEEEESSCSCCCHHHHHHHHHHHHHHHT-SEEEE
T ss_pred HHHHHHHHcCCceEEeecCcchhhhhhhhhhHHHhhhccccceEEE
Confidence 3334567899999999887 2 334455677788888876643
No 394
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=83.79 E-value=3.7 Score=40.99 Aligned_cols=35 Identities=23% Similarity=0.548 Sum_probs=29.2
Q ss_pred HcCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516 10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMD 45 (563)
Q Consensus 10 L~~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~D 45 (563)
+++++++|.|+ ||||.++++.|+..|. ++.++|.+
T Consensus 4 ~~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r~ 39 (263)
T PRK06200 4 LHGQVALITGGGSGIGRALVERFLAEGA-RVAVLERS 39 (263)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 56788999985 7999999999999997 57777643
No 395
>PLN00016 RNA-binding protein; Provisional
Probab=83.76 E-value=4.7 Score=43.06 Aligned_cols=115 Identities=17% Similarity=0.254 Sum_probs=64.6
Q ss_pred HHHcCCcEEEE----CC-cHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCc
Q 008516 8 EAIKGAKVLMV----GA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQM 82 (563)
Q Consensus 8 ~kL~~~~Vlvv----Ga-GgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v 82 (563)
.....++|+|+ |+ |-+|..+++.|...|. ++++++.+.-....+. . ... .-. ..+. .++
T Consensus 48 ~~~~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~-~V~~l~R~~~~~~~~~-----~-~~~-----~~~-~~l~--~~~- 111 (378)
T PLN00016 48 AAVEKKKVLIVNTNSGGHAFIGFYLAKELVKAGH-EVTLFTRGKEPSQKMK-----K-EPF-----SRF-SELS--SAG- 111 (378)
T ss_pred cccccceEEEEeccCCCceeEhHHHHHHHHHCCC-EEEEEecCCcchhhhc-----c-Cch-----hhh-hHhh--hcC-
Confidence 34566789999 75 8899999999999995 6888775432110000 0 000 000 0111 112
Q ss_pred eEEEeccCCCCCcchHhhc--ccccEEEEccC-CHHHHHHHHHHHHhcCC-CEEEeccccceee
Q 008516 83 SITAHHANVKDPKFNVEFF--KQFNVVLNGLD-NLDARRHVNRLCLAADV-PLVESGTTGFLGQ 142 (563)
Q Consensus 83 ~I~~~~~~i~~~~~~~~~~--~~~dvVi~alD-n~~ar~~in~~c~~~~~-pli~~gt~G~~G~ 142 (563)
++....++.+ -.+.+ .++|+|+++.. +...-..+-+.|.+.++ .+|..++.|.+|.
T Consensus 112 -v~~v~~D~~d---~~~~~~~~~~d~Vi~~~~~~~~~~~~ll~aa~~~gvkr~V~~SS~~vyg~ 171 (378)
T PLN00016 112 -VKTVWGDPAD---VKSKVAGAGFDVVYDNNGKDLDEVEPVADWAKSPGLKQFLFCSSAGVYKK 171 (378)
T ss_pred -ceEEEecHHH---HHhhhccCCccEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEccHhhcCC
Confidence 3333334422 11222 46899998643 23344455667777776 5888887776553
No 396
>PRK05884 short chain dehydrogenase; Provisional
Probab=83.70 E-value=3.3 Score=40.68 Aligned_cols=30 Identities=17% Similarity=0.436 Sum_probs=25.6
Q ss_pred cEEEECC-cHHHHHHHHHHHHhCCCeEEEEeC
Q 008516 14 KVLMVGA-GGIGCELLKTLALSGFQDIHIIDM 44 (563)
Q Consensus 14 ~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~ 44 (563)
|++|.|+ ||+|.++++.|+..|. ++.++|.
T Consensus 2 ~vlItGas~giG~~ia~~l~~~g~-~v~~~~r 32 (223)
T PRK05884 2 EVLVTGGDTDLGRTIAEGFRNDGH-KVTLVGA 32 (223)
T ss_pred eEEEEeCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence 6899985 8999999999999997 6777664
No 397
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=83.61 E-value=1.5 Score=47.26 Aligned_cols=33 Identities=24% Similarity=0.492 Sum_probs=30.2
Q ss_pred CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCc
Q 008516 13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT 46 (563)
Q Consensus 13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~ 46 (563)
++|+|||+|-+|+.+|..|++.|. +++|+|.+.
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~-~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGY-QVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCC
Confidence 489999999999999999999996 799999775
No 398
>PRK00811 spermidine synthase; Provisional
Probab=83.59 E-value=4.1 Score=42.08 Aligned_cols=35 Identities=26% Similarity=0.572 Sum_probs=24.1
Q ss_pred cCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCc
Q 008516 11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT 46 (563)
Q Consensus 11 ~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~ 46 (563)
...+||++|+|+ |.-....|...|+.+++.+|.|.
T Consensus 76 ~p~~VL~iG~G~-G~~~~~~l~~~~~~~V~~VEid~ 110 (283)
T PRK00811 76 NPKRVLIIGGGD-GGTLREVLKHPSVEKITLVEIDE 110 (283)
T ss_pred CCCEEEEEecCc-hHHHHHHHcCCCCCEEEEEeCCH
Confidence 357899999875 33333334445899999998665
No 399
>PRK10537 voltage-gated potassium channel; Provisional
Probab=83.56 E-value=4.3 Score=44.08 Aligned_cols=88 Identities=11% Similarity=0.054 Sum_probs=56.0
Q ss_pred cCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccC
Q 008516 11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN 90 (563)
Q Consensus 11 ~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~ 90 (563)
++.+++|+|.|.+|.++++.|...|. .++++|.|.++ +. ...+. ....++
T Consensus 239 ~k~HvII~G~g~lg~~v~~~L~~~g~-~vvVId~d~~~------~~---------------------~~~g~--~vI~GD 288 (393)
T PRK10537 239 RKDHFIICGHSPLAINTYLGLRQRGQ-AVTVIVPLGLE------HR---------------------LPDDA--DLIPGD 288 (393)
T ss_pred cCCeEEEECCChHHHHHHHHHHHCCC-CEEEEECchhh------hh---------------------ccCCC--cEEEeC
Confidence 46789999999999999999998886 68888876321 00 00111 123334
Q ss_pred CCCC-cchHhhcccccEEEEccCCHHHHHHHHHHHHhcC
Q 008516 91 VKDP-KFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAAD 128 (563)
Q Consensus 91 i~~~-~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~ 128 (563)
.++. .....-.++++.|+.+++|.+.-..+-..+++.+
T Consensus 289 ~td~e~L~~AgI~~A~aVI~~t~dD~~Nl~ivL~ar~l~ 327 (393)
T PRK10537 289 SSDSAVLKKAGAARARAILALRDNDADNAFVVLAAKEMS 327 (393)
T ss_pred CCCHHHHHhcCcccCCEEEEcCCChHHHHHHHHHHHHhC
Confidence 3321 1122235688899998888766666655666554
No 400
>PRK12862 malic enzyme; Reviewed
Probab=83.54 E-value=2.1 Score=50.26 Aligned_cols=40 Identities=25% Similarity=0.444 Sum_probs=35.8
Q ss_pred HHHcCCcEEEECCcHHHHHHHHHHHHhCCC--eEEEEeCCcc
Q 008516 8 EAIKGAKVLMVGAGGIGCELLKTLALSGFQ--DIHIIDMDTI 47 (563)
Q Consensus 8 ~kL~~~~VlvvGaGgiG~ellknLal~Gvg--~I~iiD~D~V 47 (563)
.+|.+.||++.|+|+-|..+++.|...|+. +|.++|..-+
T Consensus 189 ~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~G~ 230 (763)
T PRK12862 189 KDIEDVKLVASGAGAAALACLDLLVSLGVKRENIWVTDIKGV 230 (763)
T ss_pred CChhhcEEEEEChhHHHHHHHHHHHHcCCCcccEEEEcCCCe
Confidence 367889999999999999999999999995 8999996654
No 401
>TIGR01746 Thioester-redct thioester reductase domain. It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.
Probab=83.52 E-value=13 Score=38.46 Aligned_cols=30 Identities=30% Similarity=0.397 Sum_probs=24.3
Q ss_pred cEEEECC-cHHHHHHHHHHHHhCC-CeEEEEe
Q 008516 14 KVLMVGA-GGIGCELLKTLALSGF-QDIHIID 43 (563)
Q Consensus 14 ~VlvvGa-GgiG~ellknLal~Gv-g~I~iiD 43 (563)
+|+|.|+ |.+|..+++.|...|- .++..+.
T Consensus 1 ~vlvtGatG~lG~~l~~~L~~~g~~~~V~~l~ 32 (367)
T TIGR01746 1 TVLLTGATGFLGAYLLEELLRRSTQAKVICLV 32 (367)
T ss_pred CEEEeccchHHHHHHHHHHHhCCCCCEEEEEE
Confidence 5889996 9999999999999984 3566654
No 402
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=83.51 E-value=10 Score=40.33 Aligned_cols=72 Identities=18% Similarity=0.271 Sum_probs=47.6
Q ss_pred CCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccCC
Q 008516 12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV 91 (563)
Q Consensus 12 ~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~i 91 (563)
..+|+|+|+||+|.-.++....+| .+++.+| ++..|.+.|++.-. +.-|.....+
T Consensus 167 G~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~-------------------~~~~K~e~a~~lGA----d~~i~~~~~~- 221 (339)
T COG1064 167 GKWVAVVGAGGLGHMAVQYAKAMG-AEVIAIT-------------------RSEEKLELAKKLGA----DHVINSSDSD- 221 (339)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcC-CeEEEEe-------------------CChHHHHHHHHhCC----cEEEEcCCch-
Confidence 578999999999999999999899 6777765 56677766655422 2222221111
Q ss_pred CCCcchHhhcccccEEEEccC
Q 008516 92 KDPKFNVEFFKQFNVVLNGLD 112 (563)
Q Consensus 92 ~~~~~~~~~~~~~dvVi~alD 112 (563)
.....-+.+|+|+++..
T Consensus 222 ----~~~~~~~~~d~ii~tv~ 238 (339)
T COG1064 222 ----ALEAVKEIADAIIDTVG 238 (339)
T ss_pred ----hhHHhHhhCcEEEECCC
Confidence 11222233999999887
No 403
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=83.49 E-value=4.7 Score=40.26 Aligned_cols=34 Identities=29% Similarity=0.560 Sum_probs=27.9
Q ss_pred HHHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEE
Q 008516 8 EAIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHII 42 (563)
Q Consensus 8 ~kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~ii 42 (563)
..|++++++|.| .||||.++++.|+..|.. +.++
T Consensus 4 ~~l~~k~vlItGas~gIG~~ia~~l~~~G~~-v~~~ 38 (260)
T PRK08416 4 NEMKGKTLVISGGTRGIGKAIVYEFAQSGVN-IAFT 38 (260)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEE
Confidence 346788999998 589999999999999984 5554
No 404
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=83.46 E-value=5 Score=41.62 Aligned_cols=31 Identities=26% Similarity=0.512 Sum_probs=27.5
Q ss_pred cEEEECCcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516 14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMD 45 (563)
Q Consensus 14 ~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D 45 (563)
+|.+||+|-+|..++++|...|. ++++.|.+
T Consensus 2 ~Ig~IGlG~MG~~ma~~L~~~G~-~v~v~~~~ 32 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINLARAGH-QLHVTTIG 32 (292)
T ss_pred eEEEEccCHHHHHHHHHHHHCCC-eEEEEeCC
Confidence 69999999999999999999997 67787754
No 405
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=83.43 E-value=1.1 Score=48.35 Aligned_cols=100 Identities=17% Similarity=0.241 Sum_probs=66.3
Q ss_pred HHHcCCcEEEECCcHHHHHHHHHHHHhCCC--eEEEEeCCccCcccCccccCCCC-CC--CCchHHHHHHHHHHhhCCCc
Q 008516 8 EAIKGAKVLMVGAGGIGCELLKTLALSGFQ--DIHIIDMDTIEVSNLNRQFLFRQ-SH--VGQSKAKVARDAVLKFRPQM 82 (563)
Q Consensus 8 ~kL~~~~VlvvGaGgiG~ellknLal~Gvg--~I~iiD~D~Ve~sNLnRqfLf~~-~d--iGk~Ka~va~~~l~~~np~v 82 (563)
++|++.||++.|+|+-|+.+++.|..+|+. +|.++|.--+ ++.. +| .++.|.+.+.+......
T Consensus 195 k~l~d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~~~D~~G~---------l~~~r~~~~~~~~k~~~a~~~~~~~~--- 262 (432)
T COG0281 195 KKLKDQKIVINGAGAAGIAIADLLVAAGVKEENIFVVDRKGL---------LYDGREDLTMNQKKYAKAIEDTGERT--- 262 (432)
T ss_pred CCccceEEEEeCCcHHHHHHHHHHHHhCCCcccEEEEecCCc---------ccCCCcccccchHHHHHHHhhhcccc---
Confidence 468899999999999999999999999998 9999996543 3322 23 46777766554332222
Q ss_pred eEEEeccCCCCCcchHhhcccccEEEEccCC-HHHHHHHHHHHHhcCCCEEEecc
Q 008516 83 SITAHHANVKDPKFNVEFFKQFNVVLNGLDN-LDARRHVNRLCLAADVPLVESGT 136 (563)
Q Consensus 83 ~I~~~~~~i~~~~~~~~~~~~~dvVi~alDn-~~ar~~in~~c~~~~~pli~~gt 136 (563)
. ..-+.+.|+.|.+... .=...++.+|+.. |+|.+-+
T Consensus 263 ~--------------~~~~~~adv~iG~S~~G~~t~e~V~~Ma~~---PiIfala 300 (432)
T COG0281 263 L--------------DLALAGADVLIGVSGVGAFTEEMVKEMAKH---PIIFALA 300 (432)
T ss_pred c--------------cccccCCCEEEEcCCCCCcCHHHHHHhccC---CEEeecC
Confidence 0 1135677888776543 2234455666543 7776654
No 406
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=83.35 E-value=1.4 Score=46.30 Aligned_cols=32 Identities=41% Similarity=0.696 Sum_probs=28.6
Q ss_pred CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516 13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD 45 (563)
Q Consensus 13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D 45 (563)
.||.|||+|++|+.++..|+..|. +++++|.+
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~-~V~~~~r~ 34 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGA-DVTLIGRA 34 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCC-cEEEEecH
Confidence 589999999999999999999996 68888753
No 407
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=83.35 E-value=2.6 Score=46.46 Aligned_cols=38 Identities=26% Similarity=0.413 Sum_probs=33.1
Q ss_pred HcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccC
Q 008516 10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIE 48 (563)
Q Consensus 10 L~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve 48 (563)
..+++|+|+|.|..|..+++.|...| ..+++.|.+.-.
T Consensus 5 ~~~~kv~V~GLG~sG~a~a~~L~~~G-~~v~v~D~~~~~ 42 (448)
T COG0771 5 FQGKKVLVLGLGKSGLAAARFLLKLG-AEVTVSDDRPAP 42 (448)
T ss_pred ccCCEEEEEecccccHHHHHHHHHCC-CeEEEEcCCCCc
Confidence 44899999999999999999999999 479998866554
No 408
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=83.35 E-value=2.9 Score=43.66 Aligned_cols=77 Identities=10% Similarity=0.242 Sum_probs=55.5
Q ss_pred HHcCCcEEEECCc-HHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEe
Q 008516 9 AIKGAKVLMVGAG-GIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH 87 (563)
Q Consensus 9 kL~~~~VlvvGaG-giG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~ 87 (563)
.+.+++|.|||.| -+|..++.+|...|. .+++.+..+-
T Consensus 156 ~l~Gk~V~vIG~s~ivG~PmA~~L~~~ga-tVtv~~~~t~---------------------------------------- 194 (301)
T PRK14194 156 DLTGKHAVVIGRSNIVGKPMAALLLQAHC-SVTVVHSRST---------------------------------------- 194 (301)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCC-EEEEECCCCC----------------------------------------
Confidence 4788999999996 899999999999996 6777653320
Q ss_pred ccCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEeccc
Q 008516 88 HANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTT 137 (563)
Q Consensus 88 ~~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~ 137 (563)
...+..+++|+||.++..... +..-..+.|.-+||.|+.
T Consensus 195 --------~l~e~~~~ADIVIsavg~~~~---v~~~~ik~GaiVIDvgin 233 (301)
T PRK14194 195 --------DAKALCRQADIVVAAVGRPRL---IDADWLKPGAVVIDVGIN 233 (301)
T ss_pred --------CHHHHHhcCCEEEEecCChhc---ccHhhccCCcEEEEeccc
Confidence 023556788999999876542 223335667778888865
No 409
>PRK08267 short chain dehydrogenase; Provisional
Probab=83.30 E-value=3.9 Score=40.73 Aligned_cols=31 Identities=26% Similarity=0.501 Sum_probs=25.8
Q ss_pred CcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516 13 AKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM 44 (563)
Q Consensus 13 ~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~ 44 (563)
++++|.| .|+||.++++.|+..|. ++.++|.
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G~-~V~~~~r 33 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEGW-RVGAYDI 33 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeC
Confidence 4689998 68999999999999996 5777653
No 410
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=83.25 E-value=4.6 Score=43.06 Aligned_cols=90 Identities=18% Similarity=0.442 Sum_probs=57.2
Q ss_pred CCcEEEECC-cHHHHHHHHHHHH-hCC--CeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhC-CCceEEE
Q 008516 12 GAKVLMVGA-GGIGCELLKTLAL-SGF--QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFR-PQMSITA 86 (563)
Q Consensus 12 ~~~VlvvGa-GgiG~ellknLal-~Gv--g~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~n-p~v~I~~ 86 (563)
+.||.|||+ |.+|.|+++.|.. ..+ +++.++. ..+..|+.= .+. .++.++.
T Consensus 5 ~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~a---------------S~~saGk~~---------~~~~~~l~v~~ 60 (347)
T PRK06728 5 GYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLS---------------SKRSAGKTV---------QFKGREIIIQE 60 (347)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEE---------------CcccCCCCe---------eeCCcceEEEe
Confidence 468999996 8899999999994 554 3455543 223445431 111 1122221
Q ss_pred eccCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEec
Q 008516 87 HHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESG 135 (563)
Q Consensus 87 ~~~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~g 135 (563)
. +.+-|++.|+|+.|+.+-.++.+.... .+.+.++||.+
T Consensus 61 ~---------~~~~~~~~Divf~a~~~~~s~~~~~~~-~~~G~~VID~S 99 (347)
T PRK06728 61 A---------KINSFEGVDIAFFSAGGEVSRQFVNQA-VSSGAIVIDNT 99 (347)
T ss_pred C---------CHHHhcCCCEEEECCChHHHHHHHHHH-HHCCCEEEECc
Confidence 1 223358899999999887777666554 56788899865
No 411
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=83.23 E-value=5.5 Score=43.12 Aligned_cols=76 Identities=17% Similarity=0.128 Sum_probs=49.5
Q ss_pred CcEEEECC-cHHHHHHHHHHHHhCCCe------EEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhC-CCc-e
Q 008516 13 AKVLMVGA-GGIGCELLKTLALSGFQD------IHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFR-PQM-S 83 (563)
Q Consensus 13 ~~VlvvGa-GgiG~ellknLal~Gvg~------I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~n-p~v-~ 83 (563)
.||.|+|+ |.+|+.++-.|+..|+-. |+|+|. |+-+.|++.-+--+.+-. |.. +
T Consensus 45 ~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~di-----------------D~~~~~a~g~a~DL~d~a~~~~~~ 107 (387)
T TIGR01757 45 VNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGS-----------------ERSKEALEGVAMELEDSLYPLLRE 107 (387)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEecc-----------------CccchhhhHHHHHHHHhhhhhcCc
Confidence 47999999 999999999999999843 666653 344455555454444433 322 2
Q ss_pred EEEeccCCCCCcchHhhcccccEEEEccC
Q 008516 84 ITAHHANVKDPKFNVEFFKQFNVVLNGLD 112 (563)
Q Consensus 84 I~~~~~~i~~~~~~~~~~~~~dvVi~alD 112 (563)
+....+ +.+-+++.|+||.+..
T Consensus 108 v~i~~~-------~y~~~kdaDIVVitAG 129 (387)
T TIGR01757 108 VSIGID-------PYEVFEDADWALLIGA 129 (387)
T ss_pred eEEecC-------CHHHhCCCCEEEECCC
Confidence 221111 2356899999998654
No 412
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=83.21 E-value=1.8 Score=45.83 Aligned_cols=41 Identities=20% Similarity=0.298 Sum_probs=36.1
Q ss_pred cCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccC
Q 008516 11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNL 52 (563)
Q Consensus 11 ~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNL 52 (563)
.+.+|+|||+|-+|+..+-.|++.|. +++++|.+.+...+-
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~G~-~V~vie~~~~~~g~s 43 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAERGA-DVTVLEAGEAGGGAA 43 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCC-EEEEEecCccCCcch
Confidence 46789999999999999999999999 999999888865433
No 413
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=83.16 E-value=4.6 Score=40.43 Aligned_cols=85 Identities=26% Similarity=0.368 Sum_probs=46.6
Q ss_pred CcEEEECCcHHHHHHHHHHHHhC---CCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEecc
Q 008516 13 AKVLMVGAGGIGCELLKTLALSG---FQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA 89 (563)
Q Consensus 13 ~~VlvvGaGgiG~ellknLal~G---vg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~ 89 (563)
.+|.|||||+||..+++.+- -| +.-+.+.| -+..|+..+.+.+...- + .
T Consensus 1 l~vgiVGcGaIG~~l~e~v~-~~~~~~e~v~v~D-------------------~~~ek~~~~~~~~~~~~----~----s 52 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVR-DGRVDFELVAVYD-------------------RDEEKAKELEASVGRRC----V----S 52 (255)
T ss_pred CeEEEEeccHHHHHHHHHHh-cCCcceeEEEEec-------------------CCHHHHHHHHhhcCCCc----c----c
Confidence 37899999999999997654 44 43444444 33445444443332211 1 1
Q ss_pred CCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEE
Q 008516 90 NVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLV 132 (563)
Q Consensus 90 ~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli 132 (563)
+ -+++....|+|+.|-.-...|.|+-+ .++.++.+|
T Consensus 53 ~------ide~~~~~DlvVEaAS~~Av~e~~~~-~L~~g~d~i 88 (255)
T COG1712 53 D------IDELIAEVDLVVEAASPEAVREYVPK-ILKAGIDVI 88 (255)
T ss_pred c------HHHHhhccceeeeeCCHHHHHHHhHH-HHhcCCCEE
Confidence 1 13445677777777654444444333 345555554
No 414
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=83.15 E-value=1.5 Score=48.72 Aligned_cols=33 Identities=33% Similarity=0.568 Sum_probs=29.9
Q ss_pred HcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEe
Q 008516 10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIID 43 (563)
Q Consensus 10 L~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD 43 (563)
+.+++++|+|+||+|..+++.|+..|. +++++|
T Consensus 330 ~~~k~vlIiGaGgiG~aia~~L~~~G~-~V~i~~ 362 (477)
T PRK09310 330 LNNQHVAIVGAGGAAKAIATTLARAGA-ELLIFN 362 (477)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEe
Confidence 567899999999999999999999998 888875
No 415
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=83.13 E-value=6.7 Score=33.50 Aligned_cols=77 Identities=21% Similarity=0.299 Sum_probs=49.5
Q ss_pred CCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccCC
Q 008516 12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV 91 (563)
Q Consensus 12 ~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~i 91 (563)
+.+|+-+|||. |......+.+.+-.+++-+|.+. .-.+.+++++.+....-+|+.+..++
T Consensus 2 ~~~vLDlGcG~-G~~~~~l~~~~~~~~v~gvD~s~-------------------~~~~~a~~~~~~~~~~~~i~~~~~d~ 61 (112)
T PF12847_consen 2 GGRVLDLGCGT-GRLSIALARLFPGARVVGVDISP-------------------EMLEIARERAAEEGLSDRITFVQGDA 61 (112)
T ss_dssp TCEEEEETTTT-SHHHHHHHHHHTTSEEEEEESSH-------------------HHHHHHHHHHHHTTTTTTEEEEESCC
T ss_pred CCEEEEEcCcC-CHHHHHHHhcCCCCEEEEEeCCH-------------------HHHHHHHHHHHhcCCCCCeEEEECcc
Confidence 67899999865 44444333344556799888432 22445666665555566777777776
Q ss_pred CCCcchHhhcccccEEEEcc
Q 008516 92 KDPKFNVEFFKQFNVVLNGL 111 (563)
Q Consensus 92 ~~~~~~~~~~~~~dvVi~al 111 (563)
....++..+||+|+...
T Consensus 62 ---~~~~~~~~~~D~v~~~~ 78 (112)
T PF12847_consen 62 ---EFDPDFLEPFDLVICSG 78 (112)
T ss_dssp ---HGGTTTSSCEEEEEECS
T ss_pred ---ccCcccCCCCCEEEECC
Confidence 23345667899999865
No 416
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=83.12 E-value=5.8 Score=43.51 Aligned_cols=32 Identities=22% Similarity=0.418 Sum_probs=28.4
Q ss_pred CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516 13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD 45 (563)
Q Consensus 13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D 45 (563)
+||+|+|+|+.|...++.|...|. .+++.|..
T Consensus 1 ~~v~viG~G~sG~s~a~~l~~~G~-~V~~~D~~ 32 (459)
T PRK02705 1 AIAHVIGLGRSGIAAARLLKAQGW-EVVVSDRN 32 (459)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCC-EEEEECCC
Confidence 479999999999999999999997 68888744
No 417
>PLN02256 arogenate dehydrogenase
Probab=83.07 E-value=1.6 Score=45.71 Aligned_cols=93 Identities=22% Similarity=0.219 Sum_probs=57.4
Q ss_pred HHHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEe
Q 008516 8 EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH 87 (563)
Q Consensus 8 ~kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~ 87 (563)
.+-+..+|.|||+|.+|..+++.|...|. +++++|.+. .+ +.+ .+. ++. ..
T Consensus 32 ~~~~~~kI~IIG~G~mG~slA~~L~~~G~-~V~~~d~~~-------------------~~-~~a----~~~--gv~--~~ 82 (304)
T PLN02256 32 EKSRKLKIGIVGFGNFGQFLAKTFVKQGH-TVLATSRSD-------------------YS-DIA----AEL--GVS--FF 82 (304)
T ss_pred ccCCCCEEEEEeeCHHHHHHHHHHHhCCC-EEEEEECcc-------------------HH-HHH----HHc--CCe--ee
Confidence 34466789999999999999999999885 677777321 01 111 111 111 11
Q ss_pred ccCCCCCcchHhhc-ccccEEEEccCCHHHHHHHHHHH---HhcCCCEEEecc
Q 008516 88 HANVKDPKFNVEFF-KQFNVVLNGLDNLDARRHVNRLC---LAADVPLVESGT 136 (563)
Q Consensus 88 ~~~i~~~~~~~~~~-~~~dvVi~alDn~~ar~~in~~c---~~~~~pli~~gt 136 (563)
. ...+.. .+.|+|+.|+-.......+.++. ...+..+++.++
T Consensus 83 ----~---~~~e~~~~~aDvVilavp~~~~~~vl~~l~~~~l~~~~iviDv~S 128 (304)
T PLN02256 83 ----R---DPDDFCEEHPDVVLLCTSILSTEAVLRSLPLQRLKRSTLFVDVLS 128 (304)
T ss_pred ----C---CHHHHhhCCCCEEEEecCHHHHHHHHHhhhhhccCCCCEEEecCC
Confidence 1 112333 46899999987666666666653 233455777776
No 418
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=82.98 E-value=5.6 Score=42.11 Aligned_cols=92 Identities=17% Similarity=0.272 Sum_probs=55.9
Q ss_pred CcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccCC
Q 008516 13 AKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV 91 (563)
Q Consensus 13 ~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~i 91 (563)
.||+|+| .|.+|.++++.|...|...+.+.= +.+..+.|+.=. ++ +.++... ++
T Consensus 2 ~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~-------------l~s~~~~g~~l~---------~~-g~~i~v~--d~ 56 (334)
T PRK14874 2 YNVAVVGATGAVGREMLNILEERNFPVDKLRL-------------LASARSAGKELS---------FK-GKELKVE--DL 56 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcceEEE-------------EEccccCCCeee---------eC-CceeEEe--eC
Confidence 5899999 588999999999987765433220 122233343211 11 1122211 12
Q ss_pred CCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEec
Q 008516 92 KDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESG 135 (563)
Q Consensus 92 ~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~g 135 (563)
. ..-|++.|+||.|+....++.+..+. ...+..+||.+
T Consensus 57 ~-----~~~~~~vDvVf~A~g~g~s~~~~~~~-~~~G~~VIDlS 94 (334)
T PRK14874 57 T-----TFDFSGVDIALFSAGGSVSKKYAPKA-AAAGAVVIDNS 94 (334)
T ss_pred C-----HHHHcCCCEEEECCChHHHHHHHHHH-HhCCCEEEECC
Confidence 1 12347899999999988888877665 45677777754
No 419
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=82.92 E-value=5.4 Score=39.75 Aligned_cols=32 Identities=19% Similarity=0.379 Sum_probs=26.9
Q ss_pred HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEE
Q 008516 10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHII 42 (563)
Q Consensus 10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~ii 42 (563)
+++++++|.| .|+||.++++.|+..|. ++.++
T Consensus 5 ~~~k~~lItGa~~gIG~~ia~~l~~~G~-~vvi~ 37 (261)
T PRK08936 5 LEGKVVVITGGSTGLGRAMAVRFGKEKA-KVVIN 37 (261)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEE
Confidence 6788999998 78999999999999996 45454
No 420
>PRK12746 short chain dehydrogenase; Provisional
Probab=82.85 E-value=3.7 Score=40.58 Aligned_cols=32 Identities=31% Similarity=0.499 Sum_probs=26.4
Q ss_pred HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEE
Q 008516 9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHI 41 (563)
Q Consensus 9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~i 41 (563)
++++++++|.| .|+||.++++.|+..|.. +.+
T Consensus 3 ~~~~~~ilItGasg~iG~~la~~l~~~G~~-v~i 35 (254)
T PRK12746 3 NLDGKVALVTGASRGIGRAIAMRLANDGAL-VAI 35 (254)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEE
Confidence 36678999998 789999999999998863 444
No 421
>PRK12937 short chain dehydrogenase; Provisional
Probab=82.80 E-value=5.5 Score=38.99 Aligned_cols=32 Identities=25% Similarity=0.583 Sum_probs=26.6
Q ss_pred HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEE
Q 008516 10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHII 42 (563)
Q Consensus 10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~ii 42 (563)
+++++++|.| .|+||..+++.|+..|.. +.++
T Consensus 3 ~~~~~vlItG~~~~iG~~la~~l~~~g~~-v~~~ 35 (245)
T PRK12937 3 LSNKVAIVTGASRGIGAAIARRLAADGFA-VAVN 35 (245)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEe
Confidence 4578899998 599999999999999984 4444
No 422
>PRK06182 short chain dehydrogenase; Validated
Probab=82.76 E-value=2.7 Score=42.28 Aligned_cols=33 Identities=27% Similarity=0.390 Sum_probs=27.0
Q ss_pred cCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeC
Q 008516 11 KGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDM 44 (563)
Q Consensus 11 ~~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~ 44 (563)
++++++|.|+ ||+|.++++.|+..|. ++.+++.
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~G~-~V~~~~r 35 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLAAQGY-TVYGAAR 35 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence 4678999995 8999999999999986 5666654
No 423
>PLN02494 adenosylhomocysteinase
Probab=82.71 E-value=1.7 Score=48.07 Aligned_cols=36 Identities=19% Similarity=0.435 Sum_probs=31.9
Q ss_pred HcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCc
Q 008516 10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT 46 (563)
Q Consensus 10 L~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~ 46 (563)
+.+++|+|+|+|.+|..+++.+...|. ++.++|.|.
T Consensus 252 LaGKtVvViGyG~IGr~vA~~aka~Ga-~VIV~e~dp 287 (477)
T PLN02494 252 IAGKVAVICGYGDVGKGCAAAMKAAGA-RVIVTEIDP 287 (477)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCc
Confidence 578899999999999999999999998 688887654
No 424
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=82.70 E-value=6.7 Score=38.70 Aligned_cols=31 Identities=39% Similarity=0.652 Sum_probs=25.8
Q ss_pred CCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEe
Q 008516 12 GAKVLMVG-AGGIGCELLKTLALSGFQDIHIID 43 (563)
Q Consensus 12 ~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD 43 (563)
++.++|.| .|+||.++++.|+..|. ++.++|
T Consensus 2 ~k~vlItG~sg~iG~~la~~L~~~g~-~vi~~~ 33 (256)
T PRK12745 2 RPVALVTGGRRGIGLGIARALAAAGF-DLAIND 33 (256)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCC-EEEEEe
Confidence 45688887 69999999999999997 566665
No 425
>PRK09291 short chain dehydrogenase; Provisional
Probab=82.66 E-value=6.3 Score=38.93 Aligned_cols=31 Identities=29% Similarity=0.417 Sum_probs=25.1
Q ss_pred CCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEe
Q 008516 12 GAKVLMVGA-GGIGCELLKTLALSGFQDIHIID 43 (563)
Q Consensus 12 ~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD 43 (563)
+++|+|.|+ |+||..+++.|+..|. ++.+++
T Consensus 2 ~~~vlVtGasg~iG~~ia~~l~~~G~-~v~~~~ 33 (257)
T PRK09291 2 SKTILITGAGSGFGREVALRLARKGH-NVIAGV 33 (257)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEe
Confidence 457999985 8999999999999996 455544
No 426
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=82.60 E-value=2.1 Score=42.35 Aligned_cols=37 Identities=27% Similarity=0.421 Sum_probs=31.5
Q ss_pred HHHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516 8 EAIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD 45 (563)
Q Consensus 8 ~kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D 45 (563)
..+++++|+|.| .|++|..+++.|+..|. ++.++|.+
T Consensus 8 ~~~~~k~vlItG~~g~iG~~la~~l~~~G~-~Vi~~~r~ 45 (247)
T PRK08945 8 DLLKDRIILVTGAGDGIGREAALTYARHGA-TVILLGRT 45 (247)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCC-cEEEEeCC
Confidence 467788999997 78899999999999987 77888765
No 427
>PRK08862 short chain dehydrogenase; Provisional
Probab=82.59 E-value=4.9 Score=39.71 Aligned_cols=33 Identities=21% Similarity=0.308 Sum_probs=27.2
Q ss_pred HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEe
Q 008516 10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIID 43 (563)
Q Consensus 10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD 43 (563)
+++++++|.| .+|||-++++.|+..|. ++.+++
T Consensus 3 ~~~k~~lVtGas~GIG~aia~~la~~G~-~V~~~~ 36 (227)
T PRK08862 3 IKSSIILITSAGSVLGRTISCHFARLGA-TLILCD 36 (227)
T ss_pred CCCeEEEEECCccHHHHHHHHHHHHCCC-EEEEEc
Confidence 5678899998 56799999999999997 466654
No 428
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=82.59 E-value=1.7 Score=45.46 Aligned_cols=32 Identities=19% Similarity=0.426 Sum_probs=27.7
Q ss_pred cEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCc
Q 008516 14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT 46 (563)
Q Consensus 14 ~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~ 46 (563)
+|.|+|+|++|+.++..|+..|. ++++++.+.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~-~V~l~~r~~ 33 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKI-SVNLWGRNH 33 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCC-eEEEEecCH
Confidence 69999999999999999999984 578887543
No 429
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=82.59 E-value=3.2 Score=43.30 Aligned_cols=77 Identities=10% Similarity=0.237 Sum_probs=55.7
Q ss_pred HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEe
Q 008516 9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH 87 (563)
Q Consensus 9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~ 87 (563)
.+.+++|+||| .|.+|..++.+|...|. .+++.+..+- +
T Consensus 155 ~~~Gk~V~viGrs~~mG~PmA~~L~~~g~-tVtv~~~rT~--------------~------------------------- 194 (296)
T PRK14188 155 DLSGLNAVVIGRSNLVGKPMAQLLLAANA-TVTIAHSRTR--------------D------------------------- 194 (296)
T ss_pred CCCCCEEEEEcCCcchHHHHHHHHHhCCC-EEEEECCCCC--------------C-------------------------
Confidence 36889999999 89999999999999886 5777642211 0
Q ss_pred ccCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEeccc
Q 008516 88 HANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTT 137 (563)
Q Consensus 88 ~~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~ 137 (563)
-.+..+++|+|+.|+.+.. .+.....+.|.-+|+.|+.
T Consensus 195 ---------l~e~~~~ADIVIsavg~~~---~v~~~~lk~GavVIDvGin 232 (296)
T PRK14188 195 ---------LPAVCRRADILVAAVGRPE---MVKGDWIKPGATVIDVGIN 232 (296)
T ss_pred ---------HHHHHhcCCEEEEecCChh---hcchheecCCCEEEEcCCc
Confidence 1345678999999998765 3444445667778888864
No 430
>PRK06701 short chain dehydrogenase; Provisional
Probab=82.58 E-value=5.8 Score=40.65 Aligned_cols=36 Identities=33% Similarity=0.529 Sum_probs=29.5
Q ss_pred HHHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516 8 EAIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM 44 (563)
Q Consensus 8 ~kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~ 44 (563)
..+++++++|.| .|+||..+++.|+..|. ++.+++.
T Consensus 42 ~~~~~k~iLItGasggIG~~la~~l~~~G~-~V~l~~r 78 (290)
T PRK06701 42 GKLKGKVALITGGDSGIGRAVAVLFAKEGA-DIAIVYL 78 (290)
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence 356678999998 58999999999999997 5667653
No 431
>PRK06057 short chain dehydrogenase; Provisional
Probab=82.51 E-value=1.6 Score=43.49 Aligned_cols=36 Identities=28% Similarity=0.510 Sum_probs=30.7
Q ss_pred HHcCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516 9 AIKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMD 45 (563)
Q Consensus 9 kL~~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~D 45 (563)
+|.+++|+|+|+ |+||..+++.|+..|. ++.++|.+
T Consensus 4 ~~~~~~vlItGasggIG~~~a~~l~~~G~-~v~~~~r~ 40 (255)
T PRK06057 4 RLAGRVAVITGGGSGIGLATARRLAAEGA-TVVVGDID 40 (255)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCC
Confidence 477899999996 9999999999999996 57777643
No 432
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=82.49 E-value=4.9 Score=39.13 Aligned_cols=28 Identities=32% Similarity=0.513 Sum_probs=24.3
Q ss_pred HcCCcEEEEC-CcHHHHHHHHHHHHhCCC
Q 008516 10 IKGAKVLMVG-AGGIGCELLKTLALSGFQ 37 (563)
Q Consensus 10 L~~~~VlvvG-aGgiG~ellknLal~Gvg 37 (563)
++.++|+|.| .|++|.++++.|+..|..
T Consensus 4 ~~~~~vlItGasg~iG~~l~~~l~~~g~~ 32 (249)
T PRK12825 4 LMGRVALVTGAARGLGRAIALRLARAGAD 32 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCe
Confidence 3457899998 699999999999999985
No 433
>TIGR03603 cyclo_dehy_ocin bacteriocin biosynthesis cyclodehydratase, SagC family. Members of this protein family include enzymes related to SagC, a cyclodehydratase involved in the biosynthesis of streptolysin S in Streptococcus pyogenes from the protoxin polypeptide (product of the sagA gene). This protein family serves as a marker for widely distributed prokaryotic systems for making a general class of heterocycle-containing bacteriocins. Note that this model does not find all possible examples of bacteriocin biosynthesis cyclodehydratases, an in particular misses the E. coli plasmid protein McbB of microcin B17 biosynthesis.
Probab=82.47 E-value=2.4 Score=44.66 Aligned_cols=75 Identities=13% Similarity=0.150 Sum_probs=44.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHhcCcc---ccceeeecccccccccccccCCCCCCCCcccCCCccEEEEEcCCCCCHHHH
Q 008516 376 AVATTNAIIAGLIVIEAIKVLLKDTD---KYRMTYCLEHITKKMLLMPVEPYEPNKSCYVCSETPLSLEINTSRSKLRDF 452 (563)
Q Consensus 376 AIATTnAiVAGl~vlE~~K~l~~~~~---~~r~~f~~~~~~~~~~~~p~~~~~pn~~C~vC~~~~~~l~i~~~~~TL~~l 452 (563)
++..++++++++++.|++ ++.|..+ .-|-.-++. +....-. .+-.++|.|++|+.. .++..+...+.-+++
T Consensus 239 v~gp~~giigsl~a~Eai-~i~g~g~~~l~g~ll~id~-~t~~~~~---~~l~k~p~Cp~CG~~-~~~~~~~~~~~~~~~ 312 (318)
T TIGR03603 239 LIFPLLNIKKNLVVSEIF-AIGSLGTSKFEGRLLSINL-PTLEIQF---QDILKQSCCSTCGTF-NKIKFEEQNISTRNI 312 (318)
T ss_pred eehhHHHHHHHHHHHHHH-HHhCCCCcccCCeEEEEEC-CCCeEEE---EecCCCCCCcccCCc-cccchhhhhhhHHHH
Confidence 344577899999999999 8887432 122222221 1111111 122568999999743 234444456777888
Q ss_pred HHHH
Q 008516 453 VEKI 456 (563)
Q Consensus 453 i~~~ 456 (563)
++.+
T Consensus 313 ~~~~ 316 (318)
T TIGR03603 313 VKEL 316 (318)
T ss_pred HHHH
Confidence 7774
No 434
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=82.41 E-value=1.7 Score=45.91 Aligned_cols=33 Identities=30% Similarity=0.463 Sum_probs=29.9
Q ss_pred cEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCcc
Q 008516 14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTI 47 (563)
Q Consensus 14 ~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~V 47 (563)
.|+|||+|-+|+.+|..|++.|. +++|+|...+
T Consensus 2 dvvIIGaGi~G~s~A~~La~~g~-~V~l~e~~~~ 34 (380)
T TIGR01377 2 DVIVVGAGIMGCFAAYHLAKHGK-KTLLLEQFDL 34 (380)
T ss_pred cEEEECCCHHHHHHHHHHHHCCC-eEEEEeccCC
Confidence 58999999999999999999996 6999998654
No 435
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=82.37 E-value=7 Score=40.90 Aligned_cols=100 Identities=13% Similarity=0.241 Sum_probs=55.5
Q ss_pred cCCcEEEECCcHHHHHHHHHHHHhC-CCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEecc
Q 008516 11 KGAKVLMVGAGGIGCELLKTLALSG-FQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA 89 (563)
Q Consensus 11 ~~~~VlvvGaGgiG~ellknLal~G-vg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~ 89 (563)
++.||.|||+|.+|...+..+..+. +.-.-++|.|. .+. ..+..+++ ++. ....
T Consensus 3 ~klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~-------------------es~--gla~A~~~--Gi~--~~~~ 57 (302)
T PRK08300 3 SKLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDP-------------------ESD--GLARARRL--GVA--TSAE 57 (302)
T ss_pred CCCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCCh-------------------hhH--HHHHHHHc--CCC--cccC
Confidence 4678999999999999888887653 32233444321 000 00111122 111 1111
Q ss_pred CCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEeccc
Q 008516 90 NVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTT 137 (563)
Q Consensus 90 ~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~ 137 (563)
.+.+ .....-|.+.|+|++++.+. +-......+..+|+.+|+-...
T Consensus 58 ~ie~-LL~~~~~~dIDiVf~AT~a~-~H~e~a~~a~eaGk~VID~sPA 103 (302)
T PRK08300 58 GIDG-LLAMPEFDDIDIVFDATSAG-AHVRHAAKLREAGIRAIDLTPA 103 (302)
T ss_pred CHHH-HHhCcCCCCCCEEEECCCHH-HHHHHHHHHHHcCCeEEECCcc
Confidence 1100 00111246799999999874 4455577788999999886544
No 436
>PRK06046 alanine dehydrogenase; Validated
Probab=82.30 E-value=6.8 Score=41.27 Aligned_cols=74 Identities=15% Similarity=0.235 Sum_probs=50.3
Q ss_pred CCcEEEECCcHHHHHHHHHHH-HhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccC
Q 008516 12 GAKVLMVGAGGIGCELLKTLA-LSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN 90 (563)
Q Consensus 12 ~~~VlvvGaGgiG~ellknLa-l~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~ 90 (563)
..++.|+|+|+.|...+..|. ..++..+.+.|.+ ..+++.+++.+++.. .+++.... +
T Consensus 129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~-------------------~~~~~~~~~~~~~~~-~~~v~~~~-~ 187 (326)
T PRK06046 129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRT-------------------KSSAEKFVERMSSVV-GCDVTVAE-D 187 (326)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCC-------------------HHHHHHHHHHHHhhc-CceEEEeC-C
Confidence 567999999999999999998 4578888887633 345666666665432 23443322 1
Q ss_pred CCCCcchHhhcccccEEEEccCC
Q 008516 91 VKDPKFNVEFFKQFNVVLNGLDN 113 (563)
Q Consensus 91 i~~~~~~~~~~~~~dvVi~alDn 113 (563)
+ .+... .|+|++|+-+
T Consensus 188 ~------~~~l~-aDiVv~aTps 203 (326)
T PRK06046 188 I------EEACD-CDILVTTTPS 203 (326)
T ss_pred H------HHHhh-CCEEEEecCC
Confidence 1 34455 9999999875
No 437
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=82.29 E-value=2.6 Score=41.98 Aligned_cols=35 Identities=31% Similarity=0.496 Sum_probs=29.3
Q ss_pred HcCCcEEEECCc---HHHHHHHHHHHHhCCCeEEEEeCC
Q 008516 10 IKGAKVLMVGAG---GIGCELLKTLALSGFQDIHIIDMD 45 (563)
Q Consensus 10 L~~~~VlvvGaG---giG~ellknLal~Gvg~I~iiD~D 45 (563)
|+.++|+|.|++ |||..+++.|+..|. ++.+++..
T Consensus 3 l~~k~vlItGas~~~giG~~la~~l~~~G~-~vi~~~r~ 40 (256)
T PRK12748 3 LMKKIALVTGASRLNGIGAAVCRRLAAKGI-DIFFTYWS 40 (256)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHcCC-cEEEEcCC
Confidence 466789999984 799999999999997 67777643
No 438
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=82.22 E-value=1.7 Score=44.67 Aligned_cols=31 Identities=26% Similarity=0.432 Sum_probs=27.1
Q ss_pred CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516 13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDM 44 (563)
Q Consensus 13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~ 44 (563)
.||+|+|+|++|+.++..|+..|. .+++++.
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~-~V~~~~r 31 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGR-DVTFLVR 31 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCC-ceEEEec
Confidence 379999999999999999999985 5788763
No 439
>PRK08264 short chain dehydrogenase; Validated
Probab=82.14 E-value=1.9 Score=42.16 Aligned_cols=36 Identities=33% Similarity=0.501 Sum_probs=31.2
Q ss_pred HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516 10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD 45 (563)
Q Consensus 10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D 45 (563)
+.+++++|.| .|++|.++++.|+..|..++.+++.+
T Consensus 4 ~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~ 40 (238)
T PRK08264 4 IKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARD 40 (238)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecC
Confidence 5678899998 59999999999999998778888754
No 440
>PRK07904 short chain dehydrogenase; Provisional
Probab=82.12 E-value=7.9 Score=38.72 Aligned_cols=33 Identities=12% Similarity=0.280 Sum_probs=25.7
Q ss_pred CCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516 12 GAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM 44 (563)
Q Consensus 12 ~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~ 44 (563)
.++|+|.| .||||.++++.|+..|--++.+++.
T Consensus 8 ~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r 41 (253)
T PRK07904 8 PQTILLLGGTSEIGLAICERYLKNAPARVVLAAL 41 (253)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeC
Confidence 34577877 7899999999999986347777653
No 441
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=82.01 E-value=1.8 Score=47.51 Aligned_cols=32 Identities=28% Similarity=0.425 Sum_probs=28.5
Q ss_pred CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516 13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD 45 (563)
Q Consensus 13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D 45 (563)
.+|+|||+|-.|||+|..|++.|+ +++|+++.
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~-~V~LiE~r 32 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGV-PVILYEMR 32 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCC-cEEEEecc
Confidence 379999999999999999999997 68888854
No 442
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=81.94 E-value=5.7 Score=42.52 Aligned_cols=103 Identities=19% Similarity=0.225 Sum_probs=59.7
Q ss_pred EEEECCcHHHHHHHHHH--HHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccCCC
Q 008516 15 VLMVGAGGIGCELLKTL--ALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVK 92 (563)
Q Consensus 15 VlvvGaGgiG~ellknL--al~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~i~ 92 (563)
|+|||+|.-|..+|..| +..|. ++.|||...--.-.-+|-..|-..+++. ..+.+.+..+...|........
T Consensus 2 viIvGaGpAGlslA~~l~~~~~g~-~Vllid~~~~~~~~~~~tW~~~~~~~~~-----~~~~v~~~w~~~~v~~~~~~~~ 75 (374)
T PF05834_consen 2 VIIVGAGPAGLSLARRLADARPGL-SVLLIDPKPKPPWPNDRTWCFWEKDLGP-----LDSLVSHRWSGWRVYFPDGSRI 75 (374)
T ss_pred EEEECCcHHHHHHHHHHHhcCCCC-EEEEEcCCccccccCCcccccccccccc-----hHHHHheecCceEEEeCCCceE
Confidence 78999999999999999 66665 7999997654422333333444555555 3444555555666654333221
Q ss_pred CCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEE
Q 008516 93 DPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVE 133 (563)
Q Consensus 93 ~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~ 133 (563)
...... ..++......++-+.|...++-++.
T Consensus 76 --------~~~~~Y--~~i~~~~f~~~l~~~~~~~~~~~~~ 106 (374)
T PF05834_consen 76 --------LIDYPY--CMIDRADFYEFLLERAAAGGVIRLN 106 (374)
T ss_pred --------Ecccce--EEEEHHHHHHHHHHHhhhCCeEEEc
Confidence 011121 2345555666666666655554443
No 443
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=81.90 E-value=9 Score=44.20 Aligned_cols=35 Identities=29% Similarity=0.495 Sum_probs=31.0
Q ss_pred cCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCc
Q 008516 11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT 46 (563)
Q Consensus 11 ~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~ 46 (563)
...+|+|||+|..|-..+..|++.|. +++|+|...
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~-~Vtv~e~~~ 343 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGV-QVDVFDRHP 343 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCC-cEEEEeCCC
Confidence 47899999999999999999999998 589988543
No 444
>PRK06720 hypothetical protein; Provisional
Probab=81.88 E-value=5.9 Score=37.59 Aligned_cols=36 Identities=28% Similarity=0.447 Sum_probs=29.6
Q ss_pred HHcCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516 9 AIKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMD 45 (563)
Q Consensus 9 kL~~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~D 45 (563)
++.++.++|.|+ ||||.++++.|+..|. ++.++|.+
T Consensus 13 ~l~gk~~lVTGa~~GIG~aia~~l~~~G~-~V~l~~r~ 49 (169)
T PRK06720 13 KLAGKVAIVTGGGIGIGRNTALLLAKQGA-KVIVTDID 49 (169)
T ss_pred ccCCCEEEEecCCChHHHHHHHHHHHCCC-EEEEEECC
Confidence 467788999986 5799999999999995 68887744
No 445
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=81.87 E-value=5.9 Score=39.45 Aligned_cols=33 Identities=27% Similarity=0.456 Sum_probs=27.5
Q ss_pred HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEe
Q 008516 10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIID 43 (563)
Q Consensus 10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD 43 (563)
+.+++++|.| .||||.++++.|+..|. ++.+++
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G~-~vv~~~ 39 (251)
T PRK12481 6 LNGKVAIITGCNTGLGQGMAIGLAKAGA-DIVGVG 39 (251)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEec
Confidence 5678889998 78999999999999998 465554
No 446
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=81.85 E-value=1.9 Score=44.32 Aligned_cols=33 Identities=33% Similarity=0.468 Sum_probs=27.3
Q ss_pred CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCc
Q 008516 13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT 46 (563)
Q Consensus 13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~ 46 (563)
.+|+|||+|..|+.+|..|++.|+. ++|+|.+.
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~-v~i~E~~~ 34 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGID-VTIIERRP 34 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCE-EEEEESSS
T ss_pred ceEEEECCCHHHHHHHHHHHhcccc-cccchhcc
Confidence 4799999999999999999999985 88888654
No 447
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=81.76 E-value=1.8 Score=46.73 Aligned_cols=35 Identities=26% Similarity=0.408 Sum_probs=30.6
Q ss_pred HHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516 9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM 44 (563)
Q Consensus 9 kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~ 44 (563)
.|.+++|.|||+|.||..+++.|...|+ ++...|.
T Consensus 113 ~L~gktvGIIG~G~IG~~vA~~l~a~G~-~V~~~dp 147 (378)
T PRK15438 113 SLHDRTVGIVGVGNVGRRLQARLEALGI-KTLLCDP 147 (378)
T ss_pred CcCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECC
Confidence 4789999999999999999999999998 5666664
No 448
>PRK06841 short chain dehydrogenase; Provisional
Probab=81.75 E-value=2 Score=42.55 Aligned_cols=34 Identities=24% Similarity=0.530 Sum_probs=29.1
Q ss_pred HcCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeC
Q 008516 10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDM 44 (563)
Q Consensus 10 L~~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~ 44 (563)
+.+++|+|.|+ |+||.++++.|+..|. ++.+++.
T Consensus 13 ~~~k~vlItGas~~IG~~la~~l~~~G~-~Vi~~~r 47 (255)
T PRK06841 13 LSGKVAVVTGGASGIGHAIAELFAAKGA-RVALLDR 47 (255)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence 56889999995 9999999999999997 5777664
No 449
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=81.73 E-value=1.9 Score=47.67 Aligned_cols=37 Identities=24% Similarity=0.419 Sum_probs=32.4
Q ss_pred HHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCc
Q 008516 9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT 46 (563)
Q Consensus 9 kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~ 46 (563)
.|.+++|+|+|.|.+|..+++.|...|. +++++|.|.
T Consensus 251 ~LaGKtVgVIG~G~IGr~vA~rL~a~Ga-~ViV~e~dp 287 (476)
T PTZ00075 251 MIAGKTVVVCGYGDVGKGCAQALRGFGA-RVVVTEIDP 287 (476)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCc
Confidence 3688999999999999999999999998 688887554
No 450
>PRK06398 aldose dehydrogenase; Validated
Probab=81.70 E-value=5.2 Score=40.00 Aligned_cols=74 Identities=16% Similarity=0.253 Sum_probs=45.7
Q ss_pred HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHH-HHHHHHHHhhCCCceEEE
Q 008516 9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKA-KVARDAVLKFRPQMSITA 86 (563)
Q Consensus 9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka-~va~~~l~~~np~v~I~~ 86 (563)
.|++++++|.| .||||.++++.|+..|. ++.++|.+.-+.. +..+-.-|+..+.+ +.+.+.+.+....+.+-.
T Consensus 3 ~l~gk~vlItGas~gIG~~ia~~l~~~G~-~Vi~~~r~~~~~~----~~~~~~~D~~~~~~i~~~~~~~~~~~~~id~li 77 (258)
T PRK06398 3 GLKDKVAIVTGGSQGIGKAVVNRLKEEGS-NVINFDIKEPSYN----DVDYFKVDVSNKEQVIKGIDYVISKYGRIDILV 77 (258)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCccccC----ceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence 36778999998 57999999999999997 6777776542211 12233457766543 233444444333444443
Q ss_pred e
Q 008516 87 H 87 (563)
Q Consensus 87 ~ 87 (563)
+
T Consensus 78 ~ 78 (258)
T PRK06398 78 N 78 (258)
T ss_pred E
Confidence 3
No 451
>PRK08303 short chain dehydrogenase; Provisional
Probab=81.65 E-value=6.7 Score=40.72 Aligned_cols=35 Identities=23% Similarity=0.420 Sum_probs=29.6
Q ss_pred HcCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516 10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMD 45 (563)
Q Consensus 10 L~~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~D 45 (563)
|+++.++|.|+ +|||.++++.|+..|. ++.+++.+
T Consensus 6 l~~k~~lITGgs~GIG~aia~~la~~G~-~Vv~~~r~ 41 (305)
T PRK08303 6 LRGKVALVAGATRGAGRGIAVELGAAGA-TVYVTGRS 41 (305)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEecc
Confidence 67788999986 6999999999999997 67777654
No 452
>PRK05650 short chain dehydrogenase; Provisional
Probab=81.64 E-value=6.5 Score=39.46 Aligned_cols=30 Identities=27% Similarity=0.598 Sum_probs=25.1
Q ss_pred cEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516 14 KVLMVG-AGGIGCELLKTLALSGFQDIHIIDM 44 (563)
Q Consensus 14 ~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~ 44 (563)
+|+|.| .||||.++++.|+..|. ++.++|.
T Consensus 2 ~vlVtGasggIG~~la~~l~~~g~-~V~~~~r 32 (270)
T PRK05650 2 RVMITGAASGLGRAIALRWAREGW-RLALADV 32 (270)
T ss_pred EEEEecCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence 688988 58999999999999997 4666653
No 453
>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase. This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).
Probab=81.57 E-value=6.3 Score=40.24 Aligned_cols=30 Identities=40% Similarity=0.699 Sum_probs=25.2
Q ss_pred EEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516 15 VLMVG-AGGIGCELLKTLALSGFQDIHIIDM 44 (563)
Q Consensus 15 VlvvG-aGgiG~ellknLal~Gvg~I~iiD~ 44 (563)
|+|.| .|.+|+.+++.|...|...+.++|.
T Consensus 1 ilItGatG~iG~~l~~~L~~~g~~~v~~~~~ 31 (314)
T TIGR02197 1 IIVTGGAGFIGSNLVKALNERGITDILVVDN 31 (314)
T ss_pred CEEeCCcchhhHHHHHHHHHcCCceEEEEec
Confidence 57887 6999999999999999767777764
No 454
>PLN00106 malate dehydrogenase
Probab=81.57 E-value=2.2 Score=45.01 Aligned_cols=36 Identities=33% Similarity=0.636 Sum_probs=31.2
Q ss_pred cCCcEEEECC-cHHHHHHHHHHHHhCC-CeEEEEeCCc
Q 008516 11 KGAKVLMVGA-GGIGCELLKTLALSGF-QDIHIIDMDT 46 (563)
Q Consensus 11 ~~~~VlvvGa-GgiG~ellknLal~Gv-g~I~iiD~D~ 46 (563)
...||.|+|+ |.+|+.++-.|++.|. ++|.++|-+.
T Consensus 17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~ 54 (323)
T PLN00106 17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIAN 54 (323)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 3568999999 9999999999999887 5799999644
No 455
>PRK07791 short chain dehydrogenase; Provisional
Probab=81.40 E-value=5.2 Score=40.88 Aligned_cols=35 Identities=29% Similarity=0.518 Sum_probs=28.9
Q ss_pred HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516 9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM 44 (563)
Q Consensus 9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~ 44 (563)
.+.+++++|.| .||||.++++.|+..|. ++.++|.
T Consensus 3 ~l~~k~~lITGas~GIG~aia~~la~~G~-~vii~~~ 38 (286)
T PRK07791 3 LLDGRVVIVTGAGGGIGRAHALAFAAEGA-RVVVNDI 38 (286)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEeeC
Confidence 46778889998 68999999999999997 5666663
No 456
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=81.36 E-value=2.1 Score=44.77 Aligned_cols=32 Identities=28% Similarity=0.471 Sum_probs=29.7
Q ss_pred CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516 13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDM 44 (563)
Q Consensus 13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~ 44 (563)
.||.|||+|-+|+-++-.|+..|.+++.++|.
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi 33 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDV 33 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeC
Confidence 58999999999999999999999878999995
No 457
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=81.30 E-value=6.7 Score=38.81 Aligned_cols=131 Identities=17% Similarity=0.144 Sum_probs=76.5
Q ss_pred CcEEEECCcHHHHHHHHHHHHhCCCeEEEE--------------------------------------------------
Q 008516 13 AKVLMVGAGGIGCELLKTLALSGFQDIHII-------------------------------------------------- 42 (563)
Q Consensus 13 ~~VlvvGaGgiG~ellknLal~Gvg~I~ii-------------------------------------------------- 42 (563)
+++.|+|.|-+|..++..|+..|. +++|-
T Consensus 2 ~~~~i~GtGniG~alA~~~a~ag~-eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP~~a~~~v~~~l 80 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLAKAGH-EVIIGSSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVPFEAIPDVLAEL 80 (211)
T ss_pred cEEEEeccChHHHHHHHHHHhCCC-eEEEecCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEeccHHHHHhHHHHH
Confidence 478999999999999999999985 23332
Q ss_pred -----eCCccCcccCccccCCCCCCCCc-hHHHHHHHHHHhhCCCceEEEeccCCCCCcchHhhc--ccccEEEEccCCH
Q 008516 43 -----DMDTIEVSNLNRQFLFRQSHVGQ-SKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFF--KQFNVVLNGLDNL 114 (563)
Q Consensus 43 -----D~D~Ve~sNLnRqfLf~~~diGk-~Ka~va~~~l~~~np~v~I~~~~~~i~~~~~~~~~~--~~~dvVi~alDn~ 114 (563)
|-=.|+.+|---- .++..+.+. +-...+++.+.+.-|+.+|..-...+....+...-- .+.| |..|.|+.
T Consensus 81 ~~~~~~KIvID~tnp~~~-~~~~~~~~~~~~~~saae~va~~lp~akVVkAFn~i~a~~l~~~~~~~~~~~-v~vagDD~ 158 (211)
T COG2085 81 RDALGGKIVIDATNPIEV-NGEPGDLYLVPSEGSAAEIVAKLLPGAKVVKAFNTIPAAVLADLAKPGGRRD-VLVAGDDA 158 (211)
T ss_pred HHHhCCeEEEecCCCccc-cCCccccccCCCCCcHHHHHHHHCCCcchhhhhcccCHHHhccCCCcCCcee-EEEecCcH
Confidence 0111223332000 234444433 223345667777777776543222221111100001 1233 44466778
Q ss_pred HHHHHHHHHHHhcCCCEEEeccccceeeEEEE
Q 008516 115 DARRHVNRLCLAADVPLVESGTTGFLGQVTVH 146 (563)
Q Consensus 115 ~ar~~in~~c~~~~~pli~~gt~G~~G~v~v~ 146 (563)
+|+..+-+++.+.|.--+++|..-....+...
T Consensus 159 ~Ak~~v~~L~~~iG~~~ld~G~L~~a~~le~~ 190 (211)
T COG2085 159 EAKAVVAELAEDIGFRPLDAGPLENARILEPG 190 (211)
T ss_pred HHHHHHHHHHHhcCcceeeccccccccccccc
Confidence 99999999999999988999987655554443
No 458
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=81.29 E-value=6.7 Score=38.67 Aligned_cols=31 Identities=35% Similarity=0.624 Sum_probs=25.8
Q ss_pred CcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516 13 AKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM 44 (563)
Q Consensus 13 ~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~ 44 (563)
++++|.| .|+||..+++.|+..|. ++.+++.
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G~-~v~~~~r 32 (254)
T TIGR02415 1 KVALVTGGAQGIGKGIAERLAKDGF-AVAVADL 32 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence 3688888 69999999999999997 5777763
No 459
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=81.25 E-value=4.9 Score=43.79 Aligned_cols=33 Identities=36% Similarity=0.590 Sum_probs=27.9
Q ss_pred HcCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEe
Q 008516 10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIID 43 (563)
Q Consensus 10 L~~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD 43 (563)
+++++|+|.|+ ||||.++++.|+..|. ++.++|
T Consensus 176 l~gK~VLITGASgGIG~aLA~~La~~G~-~Vi~l~ 209 (406)
T PRK07424 176 LKGKTVAVTGASGTLGQALLKELHQQGA-KVVALT 209 (406)
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEe
Confidence 56788999985 9999999999999997 566665
No 460
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=81.21 E-value=1.2 Score=37.21 Aligned_cols=62 Identities=16% Similarity=0.054 Sum_probs=31.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHhcCCCcCeEEecCeEEEeeCCCchHHHHHHhhhhhhcchhhhcCcccCCCcce
Q 008516 437 PLSLEINTSRSKLRDFVEKIVKAKLGINFPLIMHGSNLLYEVGDDLDEVEVANYAANLEKVKIQASSVTLCSSPPD 512 (563)
Q Consensus 437 ~~~l~i~~~~~TL~~li~~~lk~~~~l~~~~i~~g~~~LY~~~~~~~~~~~~~~~~nl~k~L~el~~gv~~g~~~~ 512 (563)
..+++++. .-|+.+|.++ +.+.+++..... .||...... +....+..++|+++ |++||++|-
T Consensus 15 ~~Rie~~~-~~t~~~L~~k-I~~~l~~~~~~~-----~L~~~~~~~-----~~l~s~~~~tl~~l--glkHGdmly 76 (80)
T PF11543_consen 15 MKRIEVSP-SSTLSDLKEK-ISEQLSIPDSSQ-----SLSKDRNNK-----EELKSSDSKTLSSL--GLKHGDMLY 76 (80)
T ss_dssp EEEEEE-T-TSBHHHHHHH-HHHHS---TTT--------BSSGGGG-----GCSSS-TT-CCCCT-----TT-EEE
T ss_pred CEEEEcCC-cccHHHHHHH-HHHHcCCCCcce-----EEEecCCCC-----cccccCCcCCHHHc--CCCCccEEE
Confidence 45677774 6699999999 577888775532 334221110 01223457899999 999998763
No 461
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=81.19 E-value=2.1 Score=46.02 Aligned_cols=33 Identities=30% Similarity=0.530 Sum_probs=29.7
Q ss_pred CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCc
Q 008516 13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT 46 (563)
Q Consensus 13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~ 46 (563)
++|+|||+|-+|+.+|..|+..|. +++|+|.+.
T Consensus 1 ~~v~IVG~Gi~Gls~A~~l~~~g~-~V~vle~~~ 33 (416)
T PRK00711 1 MRVVVLGSGVIGVTSAWYLAQAGH-EVTVIDRQP 33 (416)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCC
Confidence 379999999999999999999996 699999873
No 462
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=81.17 E-value=1.9 Score=46.56 Aligned_cols=35 Identities=26% Similarity=0.422 Sum_probs=30.9
Q ss_pred HHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516 9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM 44 (563)
Q Consensus 9 kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~ 44 (563)
.|++++|.|||+|.+|..+++.|...|+ ++...|.
T Consensus 113 ~l~gktvGIIG~G~IG~~va~~l~a~G~-~V~~~Dp 147 (381)
T PRK00257 113 DLAERTYGVVGAGHVGGRLVRVLRGLGW-KVLVCDP 147 (381)
T ss_pred CcCcCEEEEECCCHHHHHHHHHHHHCCC-EEEEECC
Confidence 4788999999999999999999999998 5677764
No 463
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=81.16 E-value=7.3 Score=39.53 Aligned_cols=76 Identities=18% Similarity=0.243 Sum_probs=44.5
Q ss_pred cCCcEEEECCcHHHHHHHHHHHHhCC-CeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEecc
Q 008516 11 KGAKVLMVGAGGIGCELLKTLALSGF-QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA 89 (563)
Q Consensus 11 ~~~~VlvvGaGgiG~ellknLal~Gv-g~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~ 89 (563)
.+.+|+.+|||+ |..........|. ++++.+|.. ..+.+.+++...+.... +++....
T Consensus 77 ~g~~VLDiG~G~-G~~~~~~a~~~g~~~~v~gvD~s-------------------~~~l~~A~~~~~~~g~~-~v~~~~~ 135 (272)
T PRK11873 77 PGETVLDLGSGG-GFDCFLAARRVGPTGKVIGVDMT-------------------PEMLAKARANARKAGYT-NVEFRLG 135 (272)
T ss_pred CCCEEEEeCCCC-CHHHHHHHHHhCCCCEEEEECCC-------------------HHHHHHHHHHHHHcCCC-CEEEEEc
Confidence 467999999998 8765544445565 478888743 23445555555544321 4555555
Q ss_pred CCCCCcchHhhcccccEEEEc
Q 008516 90 NVKDPKFNVEFFKQFNVVLNG 110 (563)
Q Consensus 90 ~i~~~~~~~~~~~~~dvVi~a 110 (563)
++.+..+. -..||+|+..
T Consensus 136 d~~~l~~~---~~~fD~Vi~~ 153 (272)
T PRK11873 136 EIEALPVA---DNSVDVIISN 153 (272)
T ss_pred chhhCCCC---CCceeEEEEc
Confidence 55322111 1368999864
No 464
>PRK06270 homoserine dehydrogenase; Provisional
Probab=81.08 E-value=9.8 Score=40.37 Aligned_cols=23 Identities=30% Similarity=0.547 Sum_probs=20.4
Q ss_pred CCcEEEECCcHHHHHHHHHHHHh
Q 008516 12 GAKVLMVGAGGIGCELLKTLALS 34 (563)
Q Consensus 12 ~~~VlvvGaGgiG~ellknLal~ 34 (563)
..||.|+|+|.+|..+++.|...
T Consensus 2 ~i~V~IiG~G~VG~~~~~~L~~~ 24 (341)
T PRK06270 2 EMKIALIGFGGVGQGVAELLAEK 24 (341)
T ss_pred eEEEEEECCCHHHHHHHHHHHHh
Confidence 35899999999999999999765
No 465
>TIGR01289 LPOR light-dependent protochlorophyllide reductase. This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.
Probab=81.04 E-value=6.4 Score=40.89 Aligned_cols=33 Identities=27% Similarity=0.391 Sum_probs=27.2
Q ss_pred cCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEe
Q 008516 11 KGAKVLMVGA-GGIGCELLKTLALSGFQDIHIID 43 (563)
Q Consensus 11 ~~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD 43 (563)
++++++|.|+ +|||.++++.|+..|..++.+++
T Consensus 2 ~~k~vlITGas~GIG~aia~~L~~~G~~~V~l~~ 35 (314)
T TIGR01289 2 QKPTVIITGASSGLGLYAAKALAATGEWHVIMAC 35 (314)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHcCCCEEEEEe
Confidence 4678899985 79999999999999954677765
No 466
>PRK07201 short chain dehydrogenase; Provisional
Probab=81.00 E-value=5.3 Score=45.71 Aligned_cols=35 Identities=26% Similarity=0.459 Sum_probs=29.3
Q ss_pred HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516 9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM 44 (563)
Q Consensus 9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~ 44 (563)
.+++++++|.| .||||.++++.|+..|. ++.+++.
T Consensus 368 ~~~~k~vlItGas~giG~~la~~l~~~G~-~V~~~~r 403 (657)
T PRK07201 368 PLVGKVVLITGASSGIGRATAIKVAEAGA-TVFLVAR 403 (657)
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEEC
Confidence 45677899998 58999999999999997 6777763
No 467
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=80.66 E-value=8.7 Score=39.23 Aligned_cols=22 Identities=41% Similarity=0.650 Sum_probs=20.2
Q ss_pred CcEEEECCcHHHHHHHHHHHHh
Q 008516 13 AKVLMVGAGGIGCELLKTLALS 34 (563)
Q Consensus 13 ~~VlvvGaGgiG~ellknLal~ 34 (563)
.||.|+|+|.+|..+++.|...
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~ 23 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHD 23 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhC
Confidence 4899999999999999999876
No 468
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=80.62 E-value=2.3 Score=44.66 Aligned_cols=32 Identities=25% Similarity=0.370 Sum_probs=28.1
Q ss_pred CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516 13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD 45 (563)
Q Consensus 13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D 45 (563)
.+|.|+|+|.+|+.++..|+..|. +++++|.+
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G~-~V~~~~r~ 36 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKGV-PVRLWARR 36 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCC-eEEEEeCC
Confidence 589999999999999999999996 58887754
No 469
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=80.56 E-value=2.2 Score=42.71 Aligned_cols=37 Identities=27% Similarity=0.482 Sum_probs=32.7
Q ss_pred HHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516 9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD 45 (563)
Q Consensus 9 kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D 45 (563)
.|+.+||+|.|.|.+|..+++.|...|..-+.+.|.+
T Consensus 28 ~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~ 64 (227)
T cd01076 28 GLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSD 64 (227)
T ss_pred CccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence 4788999999999999999999999998766688754
No 470
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=80.40 E-value=7.7 Score=37.74 Aligned_cols=32 Identities=31% Similarity=0.534 Sum_probs=26.2
Q ss_pred HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEE
Q 008516 10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHII 42 (563)
Q Consensus 10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~ii 42 (563)
+.+++++|.| .|++|.++++.|+..|.. +.++
T Consensus 3 ~~~~~vlItG~sg~iG~~l~~~l~~~G~~-v~~~ 35 (248)
T PRK05557 3 LEGKVALVTGASRGIGRAIAERLAAQGAN-VVIN 35 (248)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEE
Confidence 4567899998 589999999999999975 4443
No 471
>PRK08628 short chain dehydrogenase; Provisional
Probab=80.31 E-value=6.6 Score=38.93 Aligned_cols=34 Identities=32% Similarity=0.416 Sum_probs=28.2
Q ss_pred HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516 10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM 44 (563)
Q Consensus 10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~ 44 (563)
|++++++|.| .||||.++++.|+..|.. +.+++.
T Consensus 5 l~~~~ilItGasggiG~~la~~l~~~G~~-v~~~~r 39 (258)
T PRK08628 5 LKDKVVIVTGGASGIGAAISLRLAEEGAI-PVIFGR 39 (258)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHcCCc-EEEEcC
Confidence 6788999998 579999999999999974 555543
No 472
>PRK07574 formate dehydrogenase; Provisional
Probab=80.27 E-value=2.1 Score=46.25 Aligned_cols=92 Identities=22% Similarity=0.256 Sum_probs=57.6
Q ss_pred HHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEec
Q 008516 9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH 88 (563)
Q Consensus 9 kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~ 88 (563)
.|.+++|.|||.|.||.++++.|...|+ +++.+|.... +.+.. ... + ++.+.
T Consensus 189 ~L~gktVGIvG~G~IG~~vA~~l~~fG~-~V~~~dr~~~-------------------~~~~~----~~~--g--~~~~~ 240 (385)
T PRK07574 189 DLEGMTVGIVGAGRIGLAVLRRLKPFDV-KLHYTDRHRL-------------------PEEVE----QEL--G--LTYHV 240 (385)
T ss_pred ecCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEECCCCC-------------------chhhH----hhc--C--ceecC
Confidence 4888999999999999999999998888 5777663210 00000 001 1 11110
Q ss_pred cCCCCCcchHhhcccccEEEEcc-CCHHHHHHHHHHHHh---cCCCEEEec
Q 008516 89 ANVKDPKFNVEFFKQFNVVLNGL-DNLDARRHVNRLCLA---ADVPLVESG 135 (563)
Q Consensus 89 ~~i~~~~~~~~~~~~~dvVi~al-Dn~~ar~~in~~c~~---~~~pli~~g 135 (563)
.-+++++++|+|+.++ .+.+.+..+|+-... .+.-+|+.+
T Consensus 241 -------~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~a 284 (385)
T PRK07574 241 -------SFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTA 284 (385)
T ss_pred -------CHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECC
Confidence 1256788999998865 456677777654332 344466655
No 473
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=80.26 E-value=2.4 Score=40.24 Aligned_cols=89 Identities=19% Similarity=0.393 Sum_probs=51.8
Q ss_pred HHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEec
Q 008516 9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH 88 (563)
Q Consensus 9 kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~ 88 (563)
.|..++++|+|.|-+|.-+|+.|..+|. +++++|-|.+. +.++.. -.-++..
T Consensus 20 ~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga-~V~V~e~DPi~----------------------alqA~~---dGf~v~~-- 71 (162)
T PF00670_consen 20 MLAGKRVVVIGYGKVGKGIARALRGLGA-RVTVTEIDPIR----------------------ALQAAM---DGFEVMT-- 71 (162)
T ss_dssp --TTSEEEEE--SHHHHHHHHHHHHTT--EEEEE-SSHHH----------------------HHHHHH---TT-EEE---
T ss_pred eeCCCEEEEeCCCcccHHHHHHHhhCCC-EEEEEECChHH----------------------HHHhhh---cCcEecC--
Confidence 4678899999999999999999999995 79999877642 111111 2223322
Q ss_pred cCCCCCcchHhhcccccEEEEccCCHHH--HHHHHHHHHhcCCCEEEec
Q 008516 89 ANVKDPKFNVEFFKQFNVVLNGLDNLDA--RRHVNRLCLAADVPLVESG 135 (563)
Q Consensus 89 ~~i~~~~~~~~~~~~~dvVi~alDn~~a--r~~in~~c~~~~~pli~~g 135 (563)
-++.....|++|.++.+... ..++.++ +.+.-+.+.|
T Consensus 72 --------~~~a~~~adi~vtaTG~~~vi~~e~~~~m--kdgail~n~G 110 (162)
T PF00670_consen 72 --------LEEALRDADIFVTATGNKDVITGEHFRQM--KDGAILANAG 110 (162)
T ss_dssp --------HHHHTTT-SEEEE-SSSSSSB-HHHHHHS---TTEEEEESS
T ss_pred --------HHHHHhhCCEEEECCCCccccCHHHHHHh--cCCeEEeccC
Confidence 13456788999999888653 4455443 3444444444
No 474
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=80.15 E-value=6.4 Score=39.12 Aligned_cols=34 Identities=29% Similarity=0.475 Sum_probs=27.3
Q ss_pred HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEe
Q 008516 9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIID 43 (563)
Q Consensus 9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD 43 (563)
.+.++.++|.| .||||.++++.|+..|. ++.++|
T Consensus 7 ~l~~k~~lItG~~~gIG~a~a~~l~~~G~-~vv~~~ 41 (253)
T PRK08993 7 SLEGKVAVVTGCDTGLGQGMALGLAEAGC-DIVGIN 41 (253)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEec
Confidence 36678899998 67899999999999997 455554
No 475
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=80.08 E-value=6.9 Score=41.25 Aligned_cols=33 Identities=33% Similarity=0.635 Sum_probs=28.7
Q ss_pred CCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516 12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM 44 (563)
Q Consensus 12 ~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~ 44 (563)
+.+|+|.|+|++|..++......|..++..+|.
T Consensus 177 g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~ 209 (358)
T TIGR03451 177 GDSVAVIGCGGVGDAAIAGAALAGASKIIAVDI 209 (358)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC
Confidence 578999999999999998888899887887763
No 476
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=80.08 E-value=7.8 Score=38.63 Aligned_cols=34 Identities=32% Similarity=0.511 Sum_probs=29.1
Q ss_pred HHcCCcEEEECCc---HHHHHHHHHHHHhCCCeEEEEe
Q 008516 9 AIKGAKVLMVGAG---GIGCELLKTLALSGFQDIHIID 43 (563)
Q Consensus 9 kL~~~~VlvvGaG---giG~ellknLal~Gvg~I~iiD 43 (563)
+|.+++++|.|++ |||.++++.|+..|. ++.+++
T Consensus 3 ~l~~k~vlVtGas~~~giG~~~a~~l~~~G~-~vi~~~ 39 (256)
T PRK12859 3 QLKNKVAVVTGVSRLDGIGAAICKELAEAGA-DIFFTY 39 (256)
T ss_pred CcCCcEEEEECCCCCCChHHHHHHHHHHCCC-eEEEEe
Confidence 5788999999985 899999999999997 466654
No 477
>PRK06487 glycerate dehydrogenase; Provisional
Probab=80.05 E-value=2.1 Score=44.95 Aligned_cols=34 Identities=18% Similarity=0.370 Sum_probs=29.4
Q ss_pred HHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEe
Q 008516 9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIID 43 (563)
Q Consensus 9 kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD 43 (563)
.|.+++|.|||.|.||.++++-|...|. ++..+|
T Consensus 145 ~l~gktvgIiG~G~IG~~vA~~l~~fgm-~V~~~~ 178 (317)
T PRK06487 145 ELEGKTLGLLGHGELGGAVARLAEAFGM-RVLIGQ 178 (317)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHhhCCC-EEEEEC
Confidence 5889999999999999999999987776 566655
No 478
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=80.03 E-value=11 Score=43.62 Aligned_cols=34 Identities=35% Similarity=0.540 Sum_probs=30.1
Q ss_pred cCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516 11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD 45 (563)
Q Consensus 11 ~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D 45 (563)
..++|+|||+|..|...+..|++.|. +++|+|..
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~-~Vtv~e~~ 225 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGH-DVTIFDAN 225 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-cEEEEecC
Confidence 35689999999999999999999997 59999854
No 479
>PRK09135 pteridine reductase; Provisional
Probab=80.00 E-value=7.5 Score=38.00 Aligned_cols=32 Identities=28% Similarity=0.478 Sum_probs=26.6
Q ss_pred cCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEe
Q 008516 11 KGAKVLMVG-AGGIGCELLKTLALSGFQDIHIID 43 (563)
Q Consensus 11 ~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD 43 (563)
..++|+|.| .|++|..+++.|+..|. ++.++|
T Consensus 5 ~~~~vlItGa~g~iG~~l~~~l~~~g~-~v~~~~ 37 (249)
T PRK09135 5 SAKVALITGGARRIGAAIARTLHAAGY-RVAIHY 37 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEc
Confidence 457899998 59999999999999997 566665
No 480
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=79.98 E-value=1.8 Score=47.86 Aligned_cols=41 Identities=22% Similarity=0.405 Sum_probs=34.4
Q ss_pred CCCHHHHHHHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516 1 MVSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM 44 (563)
Q Consensus 1 ~~~~~~q~kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~ 44 (563)
|.+. +......+|+|||+|..|-..++.|.+.|+ ++++++.
T Consensus 1 ~~~~--~~~~~~~~VaIIGAG~aGL~aA~~l~~~G~-~v~vfE~ 41 (461)
T PLN02172 1 MAPA--QNPINSQHVAVIGAGAAGLVAARELRREGH-TVVVFER 41 (461)
T ss_pred CCCc--ccCCCCCCEEEECCcHHHHHHHHHHHhcCC-eEEEEec
Confidence 4553 456778999999999999999999999997 6888764
No 481
>PRK06436 glycerate dehydrogenase; Provisional
Probab=79.92 E-value=2.3 Score=44.51 Aligned_cols=35 Identities=20% Similarity=0.271 Sum_probs=30.2
Q ss_pred HHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516 9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM 44 (563)
Q Consensus 9 kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~ 44 (563)
.|.+++|.|+|.|.||.++++.|...|+ ++..+|.
T Consensus 119 ~L~gktvgIiG~G~IG~~vA~~l~afG~-~V~~~~r 153 (303)
T PRK06436 119 LLYNKSLGILGYGGIGRRVALLAKAFGM-NIYAYTR 153 (303)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECC
Confidence 5889999999999999999998877777 6777774
No 482
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=79.88 E-value=5.5 Score=39.53 Aligned_cols=34 Identities=24% Similarity=0.474 Sum_probs=27.8
Q ss_pred HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEe
Q 008516 9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIID 43 (563)
Q Consensus 9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD 43 (563)
++.+++++|.| .||||.++++.|+..|. ++.+++
T Consensus 4 ~l~~k~~lItGas~gIG~~~a~~l~~~G~-~v~~~~ 38 (255)
T PRK06463 4 RFKGKVALITGGTRGIGRAIAEAFLREGA-KVAVLY 38 (255)
T ss_pred CcCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEe
Confidence 45678899998 59999999999999996 455544
No 483
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=79.81 E-value=2.4 Score=44.95 Aligned_cols=35 Identities=29% Similarity=0.444 Sum_probs=31.0
Q ss_pred CCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCcc
Q 008516 12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTI 47 (563)
Q Consensus 12 ~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~V 47 (563)
..+|+|||+|..|+.+|..|++.|+ +++|+|.+.-
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~~G~-~v~v~E~~~~ 39 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQSGL-RVALLAPRAP 39 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCC-eEEEEecCCC
Confidence 3579999999999999999999998 6999997654
No 484
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=79.79 E-value=2.3 Score=44.92 Aligned_cols=33 Identities=36% Similarity=0.621 Sum_probs=28.9
Q ss_pred CcEEEECC-cHHHHHHHHHHHHhCCCe------EEEEeCC
Q 008516 13 AKVLMVGA-GGIGCELLKTLALSGFQD------IHIIDMD 45 (563)
Q Consensus 13 ~~VlvvGa-GgiG~ellknLal~Gvg~------I~iiD~D 45 (563)
.||.|+|+ |.+|+.++..|+..|+-. ++|+|.+
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~ 40 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIP 40 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecC
Confidence 37999999 999999999999988754 9999854
No 485
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=79.75 E-value=2 Score=45.21 Aligned_cols=32 Identities=28% Similarity=0.443 Sum_probs=27.6
Q ss_pred HcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEE
Q 008516 10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHII 42 (563)
Q Consensus 10 L~~~~VlvvGaGgiG~ellknLal~Gvg~I~ii 42 (563)
|++++|.|||+|.+|..++++|..+|+ ++.+.
T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L~~sG~-~Viv~ 32 (314)
T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNLRDSGL-NVIVG 32 (314)
T ss_pred CCcCEEEEEeEcHHHHHHHHHHHHCCC-eEEEE
Confidence 568899999999999999999999997 34443
No 486
>PTZ00188 adrenodoxin reductase; Provisional
Probab=79.74 E-value=12 Score=41.81 Aligned_cols=97 Identities=19% Similarity=0.093 Sum_probs=54.2
Q ss_pred cCCcEEEECCcHHHHHHHHHHH-HhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHh--hCCCceEEEe
Q 008516 11 KGAKVLMVGAGGIGCELLKTLA-LSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLK--FRPQMSITAH 87 (563)
Q Consensus 11 ~~~~VlvvGaGgiG~ellknLa-l~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~--~np~v~I~~~ 87 (563)
...||+|||+|.-|++.|..|+ ..|. +++|+|....-- =|.|.- ..+.+ -..| ...+.+.. .++.++...
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~-~VtlfEk~p~pg-GLvR~G-VaPdh-~~~k--~v~~~f~~~~~~~~v~f~g- 110 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERV-KVDIFEKLPNPY-GLIRYG-VAPDH-IHVK--NTYKTFDPVFLSPNYRFFG- 110 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCC-eEEEEecCCCCc-cEEEEe-CCCCC-ccHH--HHHHHHHHHHhhCCeEEEe-
Confidence 3578999999999999999765 5665 589888654432 222321 12222 1222 22222221 234544431
Q ss_pred ccCCCCCcchHhhcccccEEEEccCCH
Q 008516 88 HANVKDPKFNVEFFKQFNVVLNGLDNL 114 (563)
Q Consensus 88 ~~~i~~~~~~~~~~~~~dvVi~alDn~ 114 (563)
...+..+.--+++...+|.||-|+...
T Consensus 111 nv~VG~Dvt~eeL~~~YDAVIlAtGA~ 137 (506)
T PTZ00188 111 NVHVGVDLKMEELRNHYNCVIFCCGAS 137 (506)
T ss_pred eeEecCccCHHHHHhcCCEEEEEcCCC
Confidence 112222222345667899999998753
No 487
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=79.67 E-value=9.5 Score=37.47 Aligned_cols=32 Identities=31% Similarity=0.547 Sum_probs=27.5
Q ss_pred CcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516 13 AKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD 45 (563)
Q Consensus 13 ~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D 45 (563)
++++|.| .|++|.++++.|+..|. ++.+++.+
T Consensus 2 ~~vlItGa~g~lG~~l~~~l~~~g~-~v~~~~r~ 34 (255)
T TIGR01963 2 KTALVTGAASGIGLAIALALAAAGA-NVVVNDLG 34 (255)
T ss_pred CEEEEcCCcchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 4789998 68999999999999998 68887754
No 488
>KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis]
Probab=79.59 E-value=7.8 Score=40.77 Aligned_cols=114 Identities=26% Similarity=0.390 Sum_probs=69.5
Q ss_pred CCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCC-CceEEEecc
Q 008516 12 GAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRP-QMSITAHHA 89 (563)
Q Consensus 12 ~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np-~v~I~~~~~ 89 (563)
..+|||.| +|=||+..+-.|...|.+ +.++| ||+|-++ .+-++++++.+ .-.|..+..
T Consensus 2 ~~~VLVtGgaGyiGsht~l~L~~~gy~-v~~vD-------Nl~n~~~------------~sl~r~~~l~~~~~~v~f~~~ 61 (343)
T KOG1371|consen 2 GKHVLVTGGAGYIGSHTVLALLKRGYG-VVIVD-------NLNNSYL------------ESLKRVRQLLGEGKSVFFVEG 61 (343)
T ss_pred CcEEEEecCCcceehHHHHHHHhCCCc-EEEEe-------cccccch------------hHHHHHHHhcCCCCceEEEEe
Confidence 46799986 899999999999999986 66666 8888752 22334444433 235666776
Q ss_pred CCCCCcchHhhcc--cccEEEE-cc----------------CCHHHHHHHHHHHHhcCCC-EEEeccccceeeEEE
Q 008516 90 NVKDPKFNVEFFK--QFNVVLN-GL----------------DNLDARRHVNRLCLAADVP-LVESGTTGFLGQVTV 145 (563)
Q Consensus 90 ~i~~~~~~~~~~~--~~dvVi~-al----------------Dn~~ar~~in~~c~~~~~p-li~~gt~G~~G~v~v 145 (563)
++.+...-...|+ .||-|+- |. .|...-.-+-+.|.+++.+ ++.+++.+.+|...-
T Consensus 62 Dl~D~~~L~kvF~~~~fd~V~Hfa~~~~vgeS~~~p~~Y~~nNi~gtlnlLe~~~~~~~~~~V~sssatvYG~p~~ 137 (343)
T KOG1371|consen 62 DLNDAEALEKLFSEVKFDAVMHFAALAAVGESMENPLSYYHNNIAGTLNLLEVMKAHNVKALVFSSSATVYGLPTK 137 (343)
T ss_pred ccCCHHHHHHHHhhcCCceEEeehhhhccchhhhCchhheehhhhhHHHHHHHHHHcCCceEEEecceeeecCcce
Confidence 6654333334443 3555543 11 0111122334456667664 678888888887554
No 489
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=79.50 E-value=2.4 Score=49.08 Aligned_cols=33 Identities=24% Similarity=0.484 Sum_probs=30.4
Q ss_pred CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCc
Q 008516 13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT 46 (563)
Q Consensus 13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~ 46 (563)
..|+|||+|-+|+.+|..|++.|. +++|+|.+.
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~~G~-~V~VlE~~~ 293 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALARRGW-QVTLYEADE 293 (662)
T ss_pred CCEEEECccHHHHHHHHHHHHCCC-eEEEEecCC
Confidence 589999999999999999999997 599999874
No 490
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=79.48 E-value=6.5 Score=43.08 Aligned_cols=145 Identities=18% Similarity=0.158 Sum_probs=85.1
Q ss_pred cCCcEEEECCcHHHHHHH-HHHH----HhCCCeEEEEeCCccCcccCccccCCCCCCCCchH--HHHHHHHHHhhCCCce
Q 008516 11 KGAKVLMVGAGGIGCELL-KTLA----LSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSK--AKVARDAVLKFRPQMS 83 (563)
Q Consensus 11 ~~~~VlvvGaGgiG~ell-knLa----l~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~K--a~va~~~l~~~np~v~ 83 (563)
++.||.+||+|+.+..-. ..+. ...+.+|.++|-|. ++.| ...+++.+++.++.++
T Consensus 2 ~~~KI~iIGgGSt~tp~~v~g~l~~~e~l~~~el~L~Did~-----------------~r~~~i~~~~~~~v~~~g~~~k 64 (442)
T COG1486 2 KKFKIVIIGGGSTYTPKLLLGDLARTEELPVRELALYDIDE-----------------ERLKIIAILAKKLVEEAGAPVK 64 (442)
T ss_pred CcceEEEECCCccccHHHHHHHHhcCccCCcceEEEEeCCH-----------------HHHHHHHHHHHHHHHhhCCCeE
Confidence 456899999999875432 2222 23456888888332 2222 2356677778888888
Q ss_pred EEEeccCCCCCcchHhhcccccEEEEcc--CCHHHHHHHHHHHHhcCCCEEEeccccceeeEEEE--eCCCCccccccCC
Q 008516 84 ITAHHANVKDPKFNVEFFKQFNVVLNGL--DNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVH--VKGKTECYECQPK 159 (563)
Q Consensus 84 I~~~~~~i~~~~~~~~~~~~~dvVi~al--Dn~~ar~~in~~c~~~~~pli~~gt~G~~G~v~v~--~~~~t~Cy~C~~~ 159 (563)
|+...+. .+-++++|+|+++. ...++|..--++..++|+ +-.-|.|..|...-. +|..-.-- +
T Consensus 65 v~~ttd~-------~eAl~gAdfVi~~~rvG~l~~r~~De~IplkyG~--~gqET~G~GGi~~glRtIpvildi~----~ 131 (442)
T COG1486 65 VEATTDR-------REALEGADFVITQIRVGGLEAREKDERIPLKHGL--YGQETNGPGGIFYGLRTIPVILDIA----K 131 (442)
T ss_pred EEEecCH-------HHHhcCCCEEEEEEeeCCcccchhhhccchhhCc--cccccccccHHHhhcccchHHHHHH----H
Confidence 8876542 56789999999973 555677666667777775 336666766653211 12110000 0
Q ss_pred CCCCCCCceeeccCCCCchhHHHHHHH
Q 008516 160 PAPKTYPVCTITSTPSKFVHCIVWAKD 186 (563)
Q Consensus 160 ~~~~~~p~cti~~~p~~~~hci~~a~~ 186 (563)
.-.+-.|-+.+-|+- .|.-.+.||..
T Consensus 132 ~m~~~~P~Aw~lNyt-NP~~~vTeAv~ 157 (442)
T COG1486 132 DMEKVCPNAWMLNYT-NPAAIVTEAVR 157 (442)
T ss_pred HHHHhCCCceEEecc-ChHHHHHHHHH
Confidence 011233555566653 46556677664
No 491
>TIGR01500 sepiapter_red sepiapterin reductase. This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs.
Probab=79.47 E-value=7.1 Score=38.87 Aligned_cols=58 Identities=14% Similarity=0.227 Sum_probs=36.5
Q ss_pred cEEEEC-CcHHHHHHHHHHHH----hCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEec
Q 008516 14 KVLMVG-AGGIGCELLKTLAL----SGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH 88 (563)
Q Consensus 14 ~VlvvG-aGgiG~ellknLal----~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~ 88 (563)
.++|.| .||||.++++.|+. .|. ++.+++.+ ..+.+.+++.++...|..++..+.
T Consensus 2 ~vlItGas~GIG~~~a~~la~~~~~~g~-~V~~~~r~-------------------~~~~~~~~~~l~~~~~~~~v~~~~ 61 (256)
T TIGR01500 2 VCLVTGASRGFGRTIAQELAKCLKSPGS-VLVLSARN-------------------DEALRQLKAEIGAERSGLRVVRVS 61 (256)
T ss_pred EEEEecCCCchHHHHHHHHHHhhccCCc-EEEEEEcC-------------------HHHHHHHHHHHHhcCCCceEEEEE
Confidence 467777 67999999999997 565 57666522 224445555555444555555555
Q ss_pred cCC
Q 008516 89 ANV 91 (563)
Q Consensus 89 ~~i 91 (563)
.++
T Consensus 62 ~Dl 64 (256)
T TIGR01500 62 LDL 64 (256)
T ss_pred ecc
Confidence 444
No 492
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=79.33 E-value=4.9 Score=44.02 Aligned_cols=94 Identities=17% Similarity=0.209 Sum_probs=51.1
Q ss_pred cEEEECCcHHHHHHHH--HHHHh-CC--CeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEec
Q 008516 14 KVLMVGAGGIGCELLK--TLALS-GF--QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH 88 (563)
Q Consensus 14 ~VlvvGaGgiG~ellk--nLal~-Gv--g~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~ 88 (563)
||.|||+|++|...+- .++.. +. .++.++|.|. .-+.+ -...+.+.+....+..+|....
T Consensus 2 KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~---e~l~~------------~~~~~~~~~~~~~~~~~I~~tt 66 (423)
T cd05297 2 KIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDE---ERLET------------VEILAKKIVEELGAPLKIEATT 66 (423)
T ss_pred eEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCH---HHHHH------------HHHHHHHHHHhcCCCeEEEEeC
Confidence 7999999999987554 45422 33 4789987432 11111 0111233333444445554322
Q ss_pred cCCCCCcchHhhcccccEEEEccCC--HHHHHHHHHHHHhcCC
Q 008516 89 ANVKDPKFNVEFFKQFNVVLNGLDN--LDARRHVNRLCLAADV 129 (563)
Q Consensus 89 ~~i~~~~~~~~~~~~~dvVi~alDn--~~ar~~in~~c~~~~~ 129 (563)
+ -.+-++++|+||.+.-. .+.+..-.++..++++
T Consensus 67 D-------~~eal~~AD~Vi~ai~~~~~~~~~~de~i~~K~g~ 102 (423)
T cd05297 67 D-------RREALDGADFVINTIQVGGHEYTETDFEIPEKYGY 102 (423)
T ss_pred C-------HHHHhcCCCEEEEeeEecCccchhhhhhhHHHcCe
Confidence 1 13557899999998643 2233322246666665
No 493
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=79.29 E-value=2.6 Score=44.31 Aligned_cols=33 Identities=36% Similarity=0.626 Sum_probs=29.2
Q ss_pred cEEEECC-cHHHHHHHHHHHHhCC-CeEEEEeCCc
Q 008516 14 KVLMVGA-GGIGCELLKTLALSGF-QDIHIIDMDT 46 (563)
Q Consensus 14 ~VlvvGa-GgiG~ellknLal~Gv-g~I~iiD~D~ 46 (563)
||.|+|+ |.+|+.++-.|+..|+ .+|.|+|-+.
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~ 35 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAG 35 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCC
Confidence 6899999 9999999999999997 5799998643
No 494
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=79.16 E-value=8.4 Score=40.03 Aligned_cols=33 Identities=33% Similarity=0.406 Sum_probs=29.0
Q ss_pred CCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516 12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM 44 (563)
Q Consensus 12 ~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~ 44 (563)
..+|+|.|+|++|..++..+..+|..++..+|.
T Consensus 164 g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~ 196 (339)
T cd08239 164 RDTVLVVGAGPVGLGALMLARALGAEDVIGVDP 196 (339)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECC
Confidence 679999999999999999999999987877763
No 495
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=79.14 E-value=9.1 Score=39.53 Aligned_cols=31 Identities=29% Similarity=0.476 Sum_probs=25.4
Q ss_pred cCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEE
Q 008516 11 KGAKVLMVG-AGGIGCELLKTLALSGFQDIHII 42 (563)
Q Consensus 11 ~~~~VlvvG-aGgiG~ellknLal~Gvg~I~ii 42 (563)
.+++|+|.| .|.||+.+++.|+..|.. ++++
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~g~~-V~~~ 35 (322)
T PLN02986 4 GGKLVCVTGASGYIASWIVKLLLLRGYT-VKAT 35 (322)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEE
Confidence 357899998 699999999999999974 5533
No 496
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=78.96 E-value=2.7 Score=47.55 Aligned_cols=36 Identities=22% Similarity=0.531 Sum_probs=31.8
Q ss_pred CCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccC
Q 008516 12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIE 48 (563)
Q Consensus 12 ~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve 48 (563)
+..|+|||+|.+|+.+|..|++.|. +++|+|...+.
T Consensus 6 ~~DVvIIGGGi~G~~iA~~La~rG~-~V~LlEk~d~~ 41 (546)
T PRK11101 6 ETDVIIIGGGATGAGIARDCALRGL-RCILVERHDIA 41 (546)
T ss_pred cccEEEECcCHHHHHHHHHHHHcCC-eEEEEECCCCC
Confidence 4679999999999999999999998 79999976554
No 497
>PRK07825 short chain dehydrogenase; Provisional
Probab=78.93 E-value=3.2 Score=41.68 Aligned_cols=35 Identities=34% Similarity=0.574 Sum_probs=28.7
Q ss_pred HcCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516 10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMD 45 (563)
Q Consensus 10 L~~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~D 45 (563)
+++++++|.|+ ||||.++++.|+..|.. +.+++.+
T Consensus 3 ~~~~~ilVtGasggiG~~la~~l~~~G~~-v~~~~r~ 38 (273)
T PRK07825 3 LRGKVVAITGGARGIGLATARALAALGAR-VAIGDLD 38 (273)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEECC
Confidence 45678999985 89999999999999974 7776643
No 498
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=78.92 E-value=15 Score=42.45 Aligned_cols=34 Identities=24% Similarity=0.324 Sum_probs=27.8
Q ss_pred cCCcEEEEC-CcHHHHHHHHHHHHhCCC-eEEEEeC
Q 008516 11 KGAKVLMVG-AGGIGCELLKTLALSGFQ-DIHIIDM 44 (563)
Q Consensus 11 ~~~~VlvvG-aGgiG~ellknLal~Gvg-~I~iiD~ 44 (563)
+.++|||.| +|-||+.+++.|...|-+ +|..+|.
T Consensus 5 ~~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~d~ 40 (668)
T PLN02260 5 EPKNILITGAAGFIASHVANRLIRNYPDYKIVVLDK 40 (668)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 467999999 699999999999998643 5777663
No 499
>PRK09126 hypothetical protein; Provisional
Probab=78.89 E-value=2.4 Score=45.13 Aligned_cols=36 Identities=28% Similarity=0.555 Sum_probs=31.2
Q ss_pred cCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCcc
Q 008516 11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTI 47 (563)
Q Consensus 11 ~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~V 47 (563)
++..|+|||+|..|+.+|-.|++.|+ +++|+|....
T Consensus 2 ~~~dviIvGgG~aGl~~A~~L~~~G~-~v~v~E~~~~ 37 (392)
T PRK09126 2 MHSDIVVVGAGPAGLSFARSLAGSGL-KVTLIERQPL 37 (392)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCCC-cEEEEeCCCc
Confidence 45789999999999999999999998 5888886553
No 500
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=78.77 E-value=2.4 Score=45.79 Aligned_cols=31 Identities=29% Similarity=0.539 Sum_probs=28.2
Q ss_pred cEEEECCcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516 14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMD 45 (563)
Q Consensus 14 ~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D 45 (563)
+|+|||+|..|+..+..|++.|+ ++.|+|..
T Consensus 2 ~VvIVGaGPAG~~aA~~la~~G~-~V~llE~~ 32 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLASAGI-QTFLLERK 32 (398)
T ss_pred eEEEECCcHHHHHHHHHHHhCCC-cEEEEecC
Confidence 79999999999999999999998 58888854
Done!