BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008518
(563 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q651U1|CRYD_ORYSJ Cryptochrome DASH, chloroplastic/mitochondrial OS=Oryza sativa
subsp. japonica GN=CRYD PE=2 SV=1
Length = 582
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 94/176 (53%), Gaps = 24/176 (13%)
Query: 42 GRSGSAVIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILSRYSNEM---------L 91
G G A++WF+ DLRV D+ +V A + AV+P+Y D RI + ++
Sbjct: 81 GGGGVAIVWFRNDLRVLDNEAVVRAWAASDAVLPVYCVDPRISAGSTHYFGFPKTGALRA 140
Query: 92 ELVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEE-------VEYH 144
+ +I LEDL+++L +QG DL+IR G+ E+++ + + V A +V+A +E VE+
Sbjct: 141 QFLIECLEDLKRNLTKQGLDLLIRHGKPEDILPSIAKAVTAHTVYAHKETCSEELLVEHL 200
Query: 145 LRQMM--AIVDETLAKVSLVDGKPKICL-WQTPFYDIKNL----NDLPVSHNEFRK 193
+R+ + ++ + A PK+ L W Y + +L N+LP + +FRK
Sbjct: 201 VRKGLEQVVIPQGGASNQKKPRNPKLQLIWGATLYHVDDLPFSVNNLPDVYTQFRK 256
>sp|Q84KJ5|CRYD_ARATH Cryptochrome DASH, chloroplastic/mitochondrial OS=Arabidopsis
thaliana GN=CRYD PE=1 SV=2
Length = 569
Score = 74.7 bits (182), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 101/211 (47%), Gaps = 23/211 (10%)
Query: 34 PTAAATSKGRSGSAVIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILSRYSNEMLE 92
P++++ + G ++WF+ DLRV D+ L A S ++P+Y D R+ ++
Sbjct: 73 PSSSSVKRKGKGVTILWFRNDLRVLDNDALYKAWSSSDTILPVYCLDPRLF--HTTHFFN 130
Query: 93 L----------VIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVE 142
++ L DLRK+L ++G +L+IR G+ E ++ L ++ A +VFA +E
Sbjct: 131 FPKTGALRGGFLMECLVDLRKNLMKRGLNLLIRSGKPEEILPSLAKDFGARTVFAHKETC 190
Query: 143 YHLRQMMAIVDETLAKVSLVDGKPKICLWQTPFYDIKNLN----DLPVSHNEFRKLQRP- 197
+ +V++ L +V + +W + Y +L DLP + +FRK
Sbjct: 191 SEEVDVERLVNQGLKRVG--NSTKLELIWGSTMYHKDDLPFDVFDLPDVYTQFRKSVEAK 248
Query: 198 ---LTSPILPPTLAGAKLEADWGPLPTFDEL 225
+S +P +L DWG +PT ++L
Sbjct: 249 CSIRSSTRIPLSLGPTPSVDDWGDVPTLEKL 279
>sp|Q38JU2|CRYD_SOLLC Cryptochrome DASH, chloroplastic/mitochondrial OS=Solanum
lycopersicum GN=CRYD PE=3 SV=2
Length = 577
Score = 73.9 bits (180), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 82/346 (23%), Positives = 142/346 (41%), Gaps = 89/346 (25%)
Query: 47 AVIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRI--------LSRYSNEMLELVIFA 97
A++WF+ DLRV D+ L+ A +A++P+Y D R+ + + + +I
Sbjct: 80 AIVWFRNDLRVLDNEALLRAWVSSEAILPVYCVDPRLFGTTHYFGMPKTGALRAQFIIEC 139
Query: 98 LEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLA 157
L DL+++L ++G DL+I+ G+ E+++ L + KA +V+A +E ++ +V L
Sbjct: 140 LNDLKRNLVKRGLDLLIQHGKPEDIVPSLAKAYKAHTVYAHKETCSEEVKVEKMVTRNLQ 199
Query: 158 K-VSLVDG----------KPKICL-WQTPFYDIKNL----NDLPVSHNEFRK----LQRP 197
K VS G K+ L W + Y I +L LP + +FRK +
Sbjct: 200 KLVSPSSGGIGNDPGSGNTTKLELVWGSTMYHIDDLPFDCESLPDVYTQFRKSVEYKSKV 259
Query: 198 LTSPILPPTLAGAKLEADWGPLPTFDELKEFVNENPWKLEESWTLINNMSAETILTDKLS 257
LP + DWG +P ++S
Sbjct: 260 RNCTKLPTSFGPPPEVGDWGHVP----------------------------------QVS 285
Query: 258 KLGKRSKRNLNNQHSPRKRLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRDDWQ 317
+LG + ++ KG GG +A L + Y + D
Sbjct: 286 ELGLQQEK------------------VSKGMNFVGGESAALGRVHDYF------WKKDLL 321
Query: 318 ELQEKLRNAESRDGASFATLFGPALCLGIISRRGVHYEAIKFEKER 363
++ ++ RN GA ++T F P L G +S R ++ E ++EKER
Sbjct: 322 KVYKETRNGML--GADYSTKFSPWLASGSLSPRFIYEEVKRYEKER 365
>sp|Q3IPX9|CRYD_NATPD Cryptochrome DASH OS=Natronomonas pharaonis (strain DSM 2160 / ATCC
35678) GN=cry PE=3 SV=1
Length = 474
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/213 (29%), Positives = 98/213 (46%), Gaps = 41/213 (19%)
Query: 46 SAVIWFKQDLRVDDHLGLV-AASKYQAVVPLYVFDHRILSRYSNEML-------ELVIF- 96
+AV+WF+ DLRV D+ L A + + V+P+Y FD RY+ +F
Sbjct: 3 TAVVWFRDDLRVTDNPTLADAVAAAETVIPVYTFDP---DRYTESEYGPPKTGGHRAVFR 59
Query: 97 --ALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDE 154
A+ DLR SL+++G DL++R GR V+ EL + A +V+A+ + R+ A V
Sbjct: 60 RQAVADLRASLRDRGGDLLVRSGRPATVVPELAQRAGADAVYAQTKPATEERRRAADVAS 119
Query: 155 TLAKVSLVDGKPKICLWQTPFYDIKNLNDLPVSHNE-------FRK-------LQRPLTS 200
L I L Q + + + +DLP + +RK ++ P ++
Sbjct: 120 ALDDAG-------IALRQRWTHTLYHPDDLPTPPTDIDDTFTPWRKETEAAATVRDPRSA 172
Query: 201 PILPPTLAGAKLEADWGPLPTFDELKEFVNENP 233
P PT G GP+PT + L V+E P
Sbjct: 173 PETVPTPDGLTP----GPVPTVESLG--VSEPP 199
>sp|Q8LB72|PHR2_ARATH Blue-light photoreceptor PHR2 OS=Arabidopsis thaliana GN=PHR2 PE=2
SV=2
Length = 447
Score = 69.7 bits (169), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 89/160 (55%), Gaps = 17/160 (10%)
Query: 50 WFKQDLRVDDHLGLVAAS-KYQAVVPLYVFDHRILSRYSNEM-------LELVIFALEDL 101
WF+ DLRV D+ L +A+ + +V+P+Y FD R + S+ + +I ++ +L
Sbjct: 120 WFRNDLRVHDNECLNSANDECVSVLPVYCFDPRDYGKSSSGFDKTGPFRAQFLIESVSEL 179
Query: 102 RKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSL 161
RK+L+ +GS+L++R G+ E V+ EL +E+ A +V+A EV + + + ET K
Sbjct: 180 RKNLQARGSNLVVRVGKPEAVLVELAKEIGADAVYAHREVSHDEVKAEGKI-ETAMKEEG 238
Query: 162 VDGKPKICLWQTPFYDIKNL----NDLPVSHNEFR-KLQR 196
V+ K W + Y + +L DLP ++ F+ K+Q+
Sbjct: 239 VEVK---YFWGSTLYHLDDLPFKIEDLPSNYGAFKDKVQK 275
>sp|Q4KML2|CRYD_DANRE Cryptochrome DASH OS=Danio rerio GN=cry-dash PE=2 SV=2
Length = 520
Score = 62.4 bits (150), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 96/206 (46%), Gaps = 29/206 (14%)
Query: 44 SGSAVIWFKQDLRV-DDHLGLVAASKYQAVVPLYVFD--------HRILSRYSNEMLELV 94
S + + + DLR+ D+ + A + ++PLY FD H + L +
Sbjct: 4 SRTVICLLRNDLRLHDNEVFHWAQRNAEHIIPLYCFDPRHYQGTYHYNFPKTGPFRLRFL 63
Query: 95 IFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFA-EEEVEYHLRQMMAIVD 153
+ +++DLR LK+ GS L++R G+ E+V+ EL++++ + S A EEV + V+
Sbjct: 64 LDSVKDLRALLKKHGSTLLVRQGKPEDVVCELIKQLGSVSTVAFHEEVASEEKS----VE 119
Query: 154 ETLAKVSLVDGKPKICLWQTPFYDIKNLNDLPVSH--------NEFRKL--QRPLTSPIL 203
E L ++ + W + Y + +DLP SH +FRK + P+L
Sbjct: 120 EKLKEICCQNKVRVQTFWGSTLY---HRDDLPFSHIGGLPDVYTQFRKAVEAQGRVRPVL 176
Query: 204 --PPTLAGAKLEADWGPLPTFDELKE 227
P + + GP+PTFD L +
Sbjct: 177 STPEQVKSPPSGLEEGPIPTFDSLGQ 202
Score = 33.5 bits (75), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 331 GASFATLFGPALCLGIISRRGVHYEAIKFEKERNA 365
G F+T F P L LG IS R ++ + K+E ER A
Sbjct: 248 GVDFSTKFSPWLALGCISPRYIYEQIKKYEVERTA 282
>sp|Q75WS4|CRYD_XENLA Cryptochrome DASH OS=Xenopus laevis GN=cry-dash PE=2 SV=1
Length = 523
Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 80/331 (24%), Positives = 139/331 (41%), Gaps = 75/331 (22%)
Query: 51 FKQDLRVDDHLGLVAASK-YQAVVPLYVFD--HRILSRYSN------EMLELVIFALEDL 101
+ DLR+ D+ L A + +VPLY FD H + + Y N L+ ++ ++ DL
Sbjct: 12 LRNDLRLHDNEVLHWAHRNADQIVPLYCFDPRHYVGTHYFNFPKTGPHRLKFLLESVRDL 71
Query: 102 RKSLKEQGSDLMIRFGRVENVIRELVEEV-KATSVFAEEEVEYHLRQMMAIVDETLAKVS 160
R +LK++GS+L++R G+ E VI +LV+++ ++V EE + + V + ++
Sbjct: 72 RITLKKKGSNLLLRRGKPEEVIEDLVKQLGNVSAVTLHEEATKEETDVESAVKQACTRL- 130
Query: 161 LVDGKPKICLWQTPFYD-----IKNLNDLPVSHNEFRKLQRPLTSPILPPTLAGAKLEAD 215
G W + Y ++++ LP + +FRK +E
Sbjct: 131 ---GIKYQTFWGSTLYHREDLPFRHISSLPDVYTQFRK-----------------AVETQ 170
Query: 216 WGPLPTFDELKEFVNENPWKLEE-SWTLINNMSAETILTDKLSKLGKRSKRNLNNQHSPR 274
PTF ++ + + P LEE S + + LTD PR
Sbjct: 171 GKVRPTF-QMPDKLKPLPSGLEEGSVPSHEDFDQQDPLTD------------------PR 211
Query: 275 KRLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRDDWQELQEKLRNAESRDGASF 334
S GG + L L+ Y + E + +++ + L G +
Sbjct: 212 TAFPCS-----------GGESQALQRLEHY--FWETNLVASYKDTRNGLI------GLDY 252
Query: 335 ATLFGPALCLGIISRRGVHYEAIKFEKERNA 365
+T F P L LG +S R ++ + K+EKER A
Sbjct: 253 STKFAPWLALGCVSPRYIYEQIGKYEKERTA 283
>sp|Q7NMD1|CRYD_GLOVI Cryptochrome DASH OS=Gloeobacter violaceus (strain PCC 7421) GN=cry
PE=3 SV=1
Length = 500
Score = 60.1 bits (144), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 59/106 (55%), Gaps = 8/106 (7%)
Query: 44 SGSAVIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILSR--YSNEML-----ELVI 95
+ + ++W++ DLRV DH L +A K VV LY FD R + + E ++
Sbjct: 3 TKTVLVWYRNDLRVHDHEPLTSALHKNARVVALYCFDPRQFGKAPFGFEKTGPFRARFLL 62
Query: 96 FALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141
++ DLR+SL++ GSDL++R G E VI LV E++ +V EV
Sbjct: 63 ESVADLRRSLRQLGSDLLVRRGHPEEVIPALVSELEIAAVHYHGEV 108
>sp|Q5IFN2|CRYD_OSTTA Cryptochrome DASH, chloroplastic/mitochondrial OS=Ostreococcus
tauri GN=Ot01g06320 PE=3 SV=1
Length = 546
Score = 55.8 bits (133), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 87/350 (24%), Positives = 130/350 (37%), Gaps = 82/350 (23%)
Query: 48 VIWFKQDLRVDDHL------GLVAASKYQAVVPLYVFDH-------RILSRYSNEMLELV 94
VIWF+ DLR+ D+ L + S VVP+YVFD R L+R+ +
Sbjct: 7 VIWFRNDLRLLDNACVARAATLASESSDVEVVPVYVFDETYFKPSKRGLARFGAGRGKFT 66
Query: 95 IFALEDLRKSLKEQGSDLMIRFGRVENVIRE--LVEEVKATSVFAEEEVEYHLRQMMAIV 152
+ + DL+ SL+ GSDL++R G+ +VI E L T + + EV +M V
Sbjct: 67 LECVGDLKTSLRALGSDLLVRCGKSRDVIAELTLTGANDRTIILTQTEVTSEETEMDVAV 126
Query: 153 DETLAKVSLVDGKPKICL---WQTPFYDIKN--------LNDLPVSHNEFRKLQRPLTSP 201
E + G + W + Y I + L+DLP FR
Sbjct: 127 -ERATRERARGGAASATMERHWGSTLYHIDDVPFDVTSGLSDLPDVFTPFRN-------- 177
Query: 202 ILPPTLAGAKLEA-----DWGPLPTFDELKEFVNENPWKLEE-SWTLINNMSAETILTDK 255
K+E+ D P PT +EL P +E W M + L
Sbjct: 178 ---------KVESKCKVRDVIPAPTANELGHV----PASVEGFEW-----MPKPSDLPFA 219
Query: 256 LSKLGKRSKRNLNNQHSPRKRLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRDD 315
S++ + + + R LD GG + L ++ YL
Sbjct: 220 SSEIAMDCDKRIKDCLDERSVLD-----------FKGGESNALARVKYYL---------- 258
Query: 316 WQ--ELQEKLRNAESRDGASFATLFGPALCLGIISRRGVHYEAIKFEKER 363
W+ L G ++T P L LG +S R V E ++E ER
Sbjct: 259 WESDRLATYFETRNGMLGGDYSTKLAPWLALGCVSPRHVVSEIRRYESER 308
>sp|P77967|CRYD_SYNY3 Cryptochrome DASH OS=Synechocystis sp. (strain PCC 6803 / Kazusa)
GN=cry PE=1 SV=2
Length = 489
Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 74/330 (22%), Positives = 131/330 (39%), Gaps = 71/330 (21%)
Query: 46 SAVIWFKQDLRVDDHLGLVAASKYQ-AVVPLYVFDHRILSRYSNEMLE-------LVIFA 97
+ ++WF+ DLR+ DH L A K A+ +Y +D R ++ + + +
Sbjct: 7 TVLVWFRNDLRLHDHEPLHRALKSGLAITAVYCYDPRQFAQTHQGFAKTGPWRSNFLQQS 66
Query: 98 LEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLA 157
+++L +SL++ G+ L++ G E VI ++ +++ A +++ EV Q V+ L
Sbjct: 67 VQNLAESLQKVGNKLLVTTGLPEQVIPQIAKQINAKTIYYHREVT----QEELDVERNLV 122
Query: 158 KVSLVDGKPKICLWQTPFYDIKNL----NDLPVSHNEFRKLQRPLTSPILPPTLAGAKLE 213
K + G W + ++L DLP +FRK I P A ++L
Sbjct: 123 KQLTILGIEAKGYWGSTLCHPEDLPFSIQDLPDLFTKFRKDIEKKKISIRPCFFAPSQL- 181
Query: 214 ADWGPLPTFDELKEFVNENPWKLEESWTLINNMSAETILTDKLSKLGKRSKRNLNNQHSP 273
LP+ + E P E + I N ++L
Sbjct: 182 -----LPSPNIKLELTAPPP----EFFPQI-NFDHRSVL--------------------- 210
Query: 274 RKRLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRDDWQELQEKLRNAESRDGAS 333
GG A L LQ Y + G D++E + + GA
Sbjct: 211 ---------------AFQGGETAGLARLQDY--FWHGDRLKDYKETRNGMV------GAD 247
Query: 334 FATLFGPALCLGIISRRGVHYEAIKFEKER 363
+++ F P L LG +S R ++ E ++E+ER
Sbjct: 248 YSSKFSPWLALGCLSPRFIYQEVKRYEQER 277
>sp|Q05380|YAT1_SYNP1 Uncharacterized 31.6 kDa protein in atpI 5'region OS=Synechococcus
sp. (strain PCC 6716) PE=4 SV=1
Length = 284
Score = 52.8 bits (125), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 66/118 (55%), Gaps = 3/118 (2%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQ-AVVPLYVFDHRILSRYSNEMLEL--VIFALEDLRKS 104
+ W ++DLR+ D+LGL AA ++ VV ++ FD +L + + ++ L+ L+++
Sbjct: 7 LFWHRRDLRLADNLGLYAARQHTPTVVGVFCFDPALLQGQDVAAVRVAYLLGCLQALKEA 66
Query: 105 LKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLV 162
+++G L++ G VI E+ +KAT+V E+VE + R+ +V TL + +
Sbjct: 67 YQQRGGCLLMVQGDPRQVIPEVATTLKATAVHWHEDVEPYARERDRVVAATLNDLGIA 124
>sp|Q5QXE0|CRYD_IDILO Cryptochrome DASH OS=Idiomarina loihiensis (strain ATCC BAA-735 /
DSM 15497 / L2-TR) GN=cry PE=3 SV=1
Length = 449
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 76/160 (47%), Gaps = 16/160 (10%)
Query: 51 FKQDLRVDDHLGLV-AASKYQAVVPLYVFD-------HRILSRYSNEMLELVIFALEDLR 102
F+ DLRV+D+L L AA + + ++ + F+ H + + +L+ LR
Sbjct: 21 FRNDLRVEDNLALYEAAQRSETLICCFCFNPTQNKYGHYGIPAMGKHRFTFLQQSLKQLR 80
Query: 103 KSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLV 162
L+ +G L++ G + ++ EL+ E + ++F + Y+ R + ++ + +
Sbjct: 81 TELEMRGQKLIVLTGTFDRILTELISERQVDAIFLSQHQGYYERLQLGLLQQRFPFLPFH 140
Query: 163 DGKPKICLW---QTPFYDIKNLNDLPVSHNEFRKLQRPLT 199
+ P L+ + PF L DLP + ++FRK PL+
Sbjct: 141 E-TPNNTLFSEQELPF----ELADLPETFSQFRKKVEPLS 175
>sp|Q7UJB1|CRYD_RHOBA Cryptochrome DASH OS=Rhodopirellula baltica (strain SH1) GN=cry
PE=3 SV=2
Length = 488
Score = 50.1 bits (118), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 77/197 (39%), Gaps = 20/197 (10%)
Query: 45 GSAVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRI-------LSRYSNEMLELVIFA 97
+A++WF+ DLR DH + AS ++ D R R +I
Sbjct: 2 ANALVWFRNDLRTIDHEPFLRASTADRCFAVHCIDPRQFETTELGFQRTGPFRARFLIEN 61
Query: 98 LEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYH----LRQMMAIVD 153
L DLR L+ G +L++R GR E V++ L+ + +V E + + D
Sbjct: 62 LTDLRSRLRSLGGELIVRVGRPETVLQHLLPSLAIDAVHFHHEPRTEEADTAESVQQLCD 121
Query: 154 ETLAKVSLVDGKPKICLWQTPFYDIKNLNDLPVSHNEFRK---LQRPLTSPILPPTLAGA 210
+ + G I + PF + D P +FRK Q SP+ P
Sbjct: 122 QHGIATHVAYGDTLIHPDELPF----EIADTPELFTDFRKEIEKQCEARSPLEEPIRIHG 177
Query: 211 KL--EADWGPLPTFDEL 225
L E + G +PT + L
Sbjct: 178 TLPEEVNAGDIPTLESL 194
>sp|O48652|UVR3_ARATH (6-4)DNA photolyase OS=Arabidopsis thaliana GN=UVR3 PE=1 SV=2
Length = 556
Score = 49.7 bits (117), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 57/229 (24%), Positives = 101/229 (44%), Gaps = 28/229 (12%)
Query: 28 CVCCVSPTA----AATSKGRSGSAVIWFKQDLRVDDHLGLVAASK-YQAVVPLYVFDHRI 82
CVC SP++ TS ++IWF++ LRV D+ L ASK + + P++V D
Sbjct: 5 CVC--SPSSYRLNPITSMATGSGSLIWFRKGLRVHDNPALEYASKGSEFMYPVFVIDPHY 62
Query: 83 L-----------SRYSNEMLELVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVK 131
+ SR + ++ +L+DL SLK+ GS L++ G V+ ++E K
Sbjct: 63 MESDPSAFSPGSSRAGVNRIRFLLESLKDLDSSLKKLGSRLLVFKGEPGEVLVRCLQEWK 122
Query: 132 ATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDGKPKICLWQTPFYDI-KNLNDLPVSHNE 190
+ E + + + + + V + + + P P + I KN P+S+
Sbjct: 123 VKRLCFEYDTDPYYQALDVKVKDYASSTGVEVFSPVSHTLFNPAHIIEKNGGKPPLSYQS 182
Query: 191 FRKLQRPLTSPILPPTLAGAKLEADWGPLPTFDELKEF-VNENPWKLEE 238
F K+ P+ A ++L + LP ++ ++E P LEE
Sbjct: 183 FLKVAG-------EPSCAKSELVMSYSSLPPIGDIGNLGISEVP-SLEE 223
>sp|Q73Y99|DHMA_MYCPA Haloalkane dehalogenase OS=Mycobacterium paratuberculosis (strain
ATCC BAA-968 / K-10) GN=dhmA PE=3 SV=1
Length = 301
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 31/47 (65%)
Query: 426 EGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPN 472
+GP I+L+HG + YR I + D GNRV A L+GFGRS+KP+
Sbjct: 45 DGPPIVLLHGEPTWSYLYRTMITPLTDAGNRVLAPDLIGFGRSDKPS 91
>sp|Q93K00|DHMA_MYCAV Haloalkane dehalogenase OS=Mycobacterium avium GN=dhmA PE=1 SV=1
Length = 301
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 31/47 (65%)
Query: 426 EGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPN 472
+GP I+L+HG + YR I + D GNRV A L+GFGRS+KP+
Sbjct: 45 DGPPIVLLHGEPTWSYLYRTMITPLTDAGNRVLAPDLIGFGRSDKPS 91
>sp|P05327|PHR_SYNP6 Deoxyribodipyrimidine photo-lyase OS=Synechococcus sp. (strain ATCC
27144 / PCC 6301 / SAUG 1402/1) GN=phr PE=1 SV=4
Length = 484
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 59/102 (57%), Gaps = 3/102 (2%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQA-VVPLYVFDHRILSRYSNEMLELVIFA--LEDLRKS 104
+ W ++DLR+ D++GL AA A ++ L+ D +IL + L++L++
Sbjct: 6 LFWHRRDLRLSDNIGLAAARAQSAQLIGLFCLDPQILQSADMAPARVAYLQGCLQELQQR 65
Query: 105 LKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLR 146
++ GS L++ G +++I +L ++++A +V+ +++E + R
Sbjct: 66 YQQAGSRLLLLQGDPQHLIPQLAQQLQAEAVYWNQDIEPYGR 107
>sp|P0A573|Y2734_MYCBO Uncharacterized protein Mb2734 OS=Mycobacterium bovis (strain ATCC
BAA-935 / AF2122/97) GN=Mb2734 PE=3 SV=1
Length = 341
Score = 47.0 bits (110), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 50/92 (54%), Gaps = 2/92 (2%)
Query: 414 NGYQIQYTVAGKEGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNI 473
+GY+ + +AG GPAILL+HG G + +A V A LLG G+S+KP
Sbjct: 25 HGYRRAFRIAGS-GPAILLIHGIGDNSTTWNGVHAKLAQRFT-VIAPDLLGHGQSDKPRA 82
Query: 474 VYTELMWSELLRDFTVEVVGEPVHLIGNSIGG 505
Y+ ++ +RD + E V ++G+S+GG
Sbjct: 83 DYSVAAYANGMRDLLSVLDIERVTIVGHSLGG 114
>sp|P0A572|Y2715_MYCTU Uncharacterized protein Rv2715/MT2788 OS=Mycobacterium tuberculosis
GN=Rv2715 PE=3 SV=1
Length = 341
Score = 47.0 bits (110), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 50/92 (54%), Gaps = 2/92 (2%)
Query: 414 NGYQIQYTVAGKEGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNI 473
+GY+ + +AG GPAILL+HG G + +A V A LLG G+S+KP
Sbjct: 25 HGYRRAFRIAGS-GPAILLIHGIGDNSTTWNGVHAKLAQRFT-VIAPDLLGHGQSDKPRA 82
Query: 474 VYTELMWSELLRDFTVEVVGEPVHLIGNSIGG 505
Y+ ++ +RD + E V ++G+S+GG
Sbjct: 83 DYSVAAYANGMRDLLSVLDIERVTIVGHSLGG 114
>sp|Q9HQ46|PHR_HALSA Deoxyribodipyrimidine photo-lyase OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=phr PE=3
SV=2
Length = 481
Score = 46.6 bits (109), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 49/98 (50%), Gaps = 10/98 (10%)
Query: 48 VIWFKQDLRVDDHLGLVAAS----------KYQAVVPLYVFDHRILSRYSNEMLELVIFA 97
+ W ++DLR D+ GL AA+ V ++ FD +L+ + + ++ A
Sbjct: 3 LFWHRRDLRTTDNRGLAAAAPGVTAVDGGHDQGPVAAVFCFDDEVLAHAAPPRVAFMLDA 62
Query: 98 LEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSV 135
L LR+ ++ GSDL++R G V+ + ++ AT V
Sbjct: 63 LAALRERYRDLGSDLIVRHGDPAAVLPAVANDLDATRV 100
>sp|B2HJU9|DHMA_MYCMM Haloalkane dehalogenase OS=Mycobacterium marinum (strain ATCC
BAA-535 / M) GN=dhmA PE=3 SV=1
Length = 297
Score = 46.6 bits (109), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 426 EGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNIV--YTELMWSEL 483
+GP I+L+HG + YR I +A GG RV A L+GFGRS+KP + YT L E
Sbjct: 45 DGPPIVLLHGEPTWSYLYRTMIPPLAAGGYRVLAPDLIGFGRSDKPTRIADYTYLRHVEW 104
Query: 484 LRDFTVEV 491
++ + E+
Sbjct: 105 VKSWFEEL 112
>sp|O31581|YFHM_BACSU AB hydrolase superfamily protein YfhM OS=Bacillus subtilis (strain
168) GN=yfhM PE=3 SV=1
Length = 286
Score = 46.2 bits (108), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 48/97 (49%), Gaps = 7/97 (7%)
Query: 414 NGYQIQYTVAGKE-GPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPN 472
NG + AG+E GP I+L+HGF F +++ I + D G RV A G+ S+KP
Sbjct: 12 NGITLHVAAAGREDGPLIVLLHGFPEFWYGWKNQIKPLVDAGYRVIAPDQRGYNLSDKPE 71
Query: 473 IVYTELMWSELLRD----FTVEVVGEPVHLIGNSIGG 505
+ + + + LRD + E +IG+ GG
Sbjct: 72 GIDSYRI--DTLRDDIIGLITQFTDEKAIVIGHDWGG 106
>sp|P00914|PHR_ECOLI Deoxyribodipyrimidine photo-lyase OS=Escherichia coli (strain K12)
GN=phrB PE=1 SV=1
Length = 472
Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 59/120 (49%), Gaps = 8/120 (6%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQA--VVPLYVFDHRILSRY--SNEMLELVIFALEDLRK 103
++WF+QDLR+ D+L L AA + + V+ LY+ R + + S EL+ L L+
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLNGLQI 64
Query: 104 SLKEQGSDLMIR----FGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKV 159
+L E+G L+ R F +++++ E T +F + E + R V+ L V
Sbjct: 65 ALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERALRNV 124
>sp|Q9KR33|CRYD_VIBCH Cryptochrome DASH OS=Vibrio cholerae serotype O1 (strain ATCC 39315
/ El Tor Inaba N16961) GN=cry1 PE=1 SV=1
Length = 461
Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 77/184 (41%), Gaps = 22/184 (11%)
Query: 47 AVIWFKQDLRVDDHLGLVAAS-KYQAVVPLYVFDH--RILSRYSNEML------ELVIFA 97
+ WF DLRV+D+ L AS + ++ LY + L+RY+ + +
Sbjct: 6 GLYWFTNDLRVNDNPLLEQASQQVDRLICLYCYPSITPFLARYAQQTQWGEAKKRFLNQT 65
Query: 98 LEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLA 157
L DL SL G L + +R L+ +V+ T ++ + RQ +A + + +
Sbjct: 66 LADLDHSLSTLGQKLWVTPLLPYQALRHLLTQVEITDIYVDAVAGSDERQAIARIHQDFS 125
Query: 158 KVSLVDGKPKICLW--QTPFYDIKNLNDLPVSHNEFRK------LQRPLTSP-ILPPTLA 208
V + L Q PF L LP + +FRK L P+ P +LPP
Sbjct: 126 SVHIHQQALHSLLSEPQLPF----ALEALPSTFTQFRKQVETISLSAPMGYPHVLPPIEQ 181
Query: 209 GAKL 212
G +L
Sbjct: 182 GWQL 185
>sp|P40115|CRY1_SINAL Cryptochrome-1 OS=Sinapis alba GN=PHR1 PE=2 SV=1
Length = 501
Score = 43.1 bits (100), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 65/121 (53%), Gaps = 12/121 (9%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVF-----DHRILSRYSNEMLELVIFALEDLR 102
++WF++DLR++D+ L AA+ +V P++++ R S ++ +L LR
Sbjct: 8 IVWFRRDLRIEDNPALAAAAHEGSVFPVFIWCPEEEGQFYPGRASRWWMKQ---SLAHLR 64
Query: 103 KSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLV 162
+SLK GS+L + + + + +++ V+AT A + V HL +++V + K LV
Sbjct: 65 QSLKALGSELTLI--KTHSTVSAILDCVRATG--ATKVVFNHLYDPVSLVRDHTVKEKLV 120
Query: 163 D 163
+
Sbjct: 121 E 121
>sp|P64301|DHMA1_MYCTU Haloalkane dehalogenase 1 OS=Mycobacterium tuberculosis GN=dhmA1
PE=3 SV=1
Length = 300
Score = 43.1 bits (100), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Query: 417 QIQYTVAGK-EGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNIV- 474
++ Y G +GP I+L+HG + YR I ++ G+RV A L+GFGRS+KP +
Sbjct: 35 RMHYVDEGPGDGPPIVLLHGEPTWSYLYRTMIPPLSAAGHRVLAPDLIGFGRSDKPTRIE 94
Query: 475 -YTEL 478
YT L
Sbjct: 95 DYTYL 99
>sp|P64302|DHMA1_MYCBO Haloalkane dehalogenase 1 OS=Mycobacterium bovis (strain ATCC
BAA-935 / AF2122/97) GN=dhmA1 PE=3 SV=1
Length = 300
Score = 43.1 bits (100), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Query: 417 QIQYTVAGK-EGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNIV- 474
++ Y G +GP I+L+HG + YR I ++ G+RV A L+GFGRS+KP +
Sbjct: 35 RMHYVDEGPGDGPPIVLLHGEPTWSYLYRTMIPPLSAAGHRVLAPDLIGFGRSDKPTRIE 94
Query: 475 -YTEL 478
YT L
Sbjct: 95 DYTYL 99
>sp|Q17DK5|CRY1_AEDAE Cryptochrome-1 OS=Aedes aegypti GN=cry PE=3 SV=1
Length = 545
Score = 42.7 bits (99), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 51/104 (49%), Gaps = 9/104 (8%)
Query: 48 VIWFKQDLRVDDHLGLVAA-------SKYQAVVPLYVFDHRILSR--YSNEMLELVIFAL 98
++WF+ LR+ D+ L+ A S+ + P+++FD ++ ++ +L
Sbjct: 6 ILWFRHGLRLHDNPSLLEALRNDGTGSESVRLYPIFIFDGESAGTKLVGFNRMKFLLESL 65
Query: 99 EDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVE 142
DL + L+E G L + G NV+R L EE+ + E++ E
Sbjct: 66 ADLDRQLREIGGQLYVFKGNAVNVMRRLFEELNIRKLCFEQDCE 109
>sp|Q96524|CRY2_ARATH Cryptochrome-2 OS=Arabidopsis thaliana GN=CRY2 PE=1 SV=2
Length = 612
Score = 42.7 bits (99), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 63/121 (52%), Gaps = 12/121 (9%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVF-----DHRILSRYSNEMLELVIFALEDLR 102
++WF++DLR++D+ L AA+ +V P++++ R S ++ +L L
Sbjct: 8 IVWFRRDLRIEDNPALAAAAHEGSVFPVFIWCPEEEGQFYPGRASRWWMKQ---SLAHLS 64
Query: 103 KSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLV 162
+SLK GSDL + + N I +++ ++ T A + V HL +++V + K LV
Sbjct: 65 QSLKALGSDLTLI--KTHNTISAILDCIRVTG--ATKVVFNHLYDPVSLVRDHTVKEKLV 120
Query: 163 D 163
+
Sbjct: 121 E 121
>sp|P27747|ACOC_CUPNH Dihydrolipoyllysine-residue acetyltransferase component of acetoin
cleaving system OS=Cupriavidus necator (strain ATCC
17699 / H16 / DSM 428 / Stanier 337) GN=acoC PE=1 SV=3
Length = 374
Score = 42.4 bits (98), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 49/93 (52%), Gaps = 3/93 (3%)
Query: 414 NGYQIQYTVAGKEGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNI 473
+G +++Y G +L +HGFG L+++ N+ +AD V A+ L G G+S P +
Sbjct: 122 DGIRVRYARKGGGAETVLFIHGFGGDLDNWLFNLDPLAD-AYTVVALDLPGHGQS-SPRL 179
Query: 474 VYTEL-MWSELLRDFTVEVVGEPVHLIGNSIGG 505
T L + + F E E H++G+S+GG
Sbjct: 180 AGTTLAQMAGFVARFMDETGIEAAHVVGHSMGG 212
>sp|P52278|PIP_LACHE Proline iminopeptidase OS=Lactobacillus helveticus GN=pip PE=1 SV=1
Length = 294
Score = 41.2 bits (95), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 6/99 (6%)
Query: 415 GYQIQYTVAGK--EGPAILLVHGFGAFLEHYRDNIYDIAD-GGNRVWAITLLGFGRSEKP 471
GY+ Y + G+ E P ++L+HG +Y + + ++A G R+ LG G S P
Sbjct: 12 GYETYYRIVGERSEKPPLVLLHGGPGSSHNYFEVLDELAQKDGRRIIMYDQLGCGESSIP 71
Query: 472 NI---VYTELMWSELLRDFTVEVVGEPVHLIGNSIGGMF 507
+ +YT+ W + L + +HL+G S GGM
Sbjct: 72 DDHPELYTKETWVKELEALREHLALRKMHLLGQSWGGML 110
>sp|A8YWL3|PIP_LACH4 Proline iminopeptidase OS=Lactobacillus helveticus (strain DPC
4571) GN=pip PE=3 SV=1
Length = 294
Score = 41.2 bits (95), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 6/99 (6%)
Query: 415 GYQIQYTVAGK--EGPAILLVHGFGAFLEHYRDNIYDIAD-GGNRVWAITLLGFGRSEKP 471
GY+ Y + G+ E P ++L+HG +Y + + ++A G R+ LG G S P
Sbjct: 12 GYETYYRIVGERSEKPPLVLLHGGPGSSHNYFEVLDELAQKDGRRIIMYDQLGCGESSIP 71
Query: 472 NI---VYTELMWSELLRDFTVEVVGEPVHLIGNSIGGMF 507
+ +YT+ W + L + +HL+G S GGM
Sbjct: 72 DDHPELYTKETWVKELEALREHLALRKMHLLGQSWGGML 110
>sp|Q890D8|PIP_LACPL Proline iminopeptidase OS=Lactobacillus plantarum (strain ATCC
BAA-793 / NCIMB 8826 / WCFS1) GN=pip PE=3 SV=2
Length = 287
Score = 40.8 bits (94), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 45/101 (44%), Gaps = 6/101 (5%)
Query: 413 WNGYQIQYTVAG---KEGPAILLVHGFGAFLEHYRDNIYDIA-DGGNRVWAITLLGFGRS 468
+NGYQ Y + G ++L+HG +Y + D+A G + LG GRS
Sbjct: 3 FNGYQTYYRIVGDRQSNKTPLVLLHGGPGSTHNYFEGFDDLAAQTGRPIVMYDQLGCGRS 62
Query: 469 EKPN--IVYTELMWSELLRDFTVEVVGEPVHLIGNSIGGMF 507
P+ ++ MW LR + +HL+G S GGM
Sbjct: 63 SIPDDDQLWQAAMWVAELRALRTYLDLPEIHLLGQSWGGML 103
>sp|B0SY51|DHMA_CAUSK Haloalkane dehalogenase OS=Caulobacter sp. (strain K31) GN=dhmA
PE=3 SV=1
Length = 302
Score = 40.4 bits (93), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 417 QIQYTVAG-KEGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKP 471
++ Y G ++G +LL+HG ++ YR I +A G+RV A L+GFGRS+KP
Sbjct: 35 RLHYVDEGPRDGAPVLLMHGEPSWAYLYRKIIPALAARGHRVIAPDLIGFGRSDKP 90
>sp|Q7SI68|CRYD_NEUCR Putative cryptochrome DASH, mitochondrial OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=B22I21.260 PE=3 SV=1
Length = 745
Score = 40.4 bits (93), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 63/149 (42%), Gaps = 28/149 (18%)
Query: 100 DLRKSLKEQGSDLMIRFGRVENVIRELVEEVKAT-----SVFAEEEVEYHLRQMMAIVDE 154
DL+ SL+ GSDL++R G ++VI+ LVE +KA +V+ + V
Sbjct: 90 DLKTSLQSIGSDLLVRAGPYKDVIQSLVEGLKAKECQVGAVWMTSHEGSEEKSEEKTVAS 149
Query: 155 TLAKVSLVDGKPKICLWQTPFY-------DIKNLNDLPVSHNEFRKLQRPL---TSPILP 204
AK S +D K LW Y I +LNDLP +RK PL LP
Sbjct: 150 FCAK-SGIDFK----LWDDEKYLIHDRDTGITHLNDLPDVFTTYRKQIEPLREKARKTLP 204
Query: 205 PTLAGAKLEADWGPLPTFDELKEFVNENP 233
GA LP + ++ ++ P
Sbjct: 205 VPEKGA--------LPAYPDIDMIPSQQP 225
>sp|Q7PYI7|CRY1_ANOGA Cryptochrome-1 OS=Anopheles gambiae GN=Cry1 PE=2 SV=4
Length = 545
Score = 40.0 bits (92), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 53/109 (48%), Gaps = 17/109 (15%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAV---------VPLYVFD-----HRILSRYSNEMLEL 93
++WF+ LR+ D+ L+ A K V P+++FD RI+ N M +
Sbjct: 6 ILWFRHGLRLHDNPSLLEALKSDCVNQSSEAVKLFPIFIFDGESAGTRIVG--YNRM-KF 62
Query: 94 VIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVE 142
++ +L DL + ++ G L++ G V+R L EE+ + E++ E
Sbjct: 63 LLESLADLDRQFRDLGGQLLVFRGDSVTVLRRLFEELNIKKLCYEQDCE 111
>sp|P25078|PHR_SALTY Deoxyribodipyrimidine photo-lyase OS=Salmonella typhimurium (strain
LT2 / SGSC1412 / ATCC 700720) GN=phrB PE=1 SV=2
Length = 473
Score = 40.0 bits (92), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 57/120 (47%), Gaps = 8/120 (6%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLE----LVIFALEDLRK 103
++WF++DLR+ D+L L AA + + L ++ +++M + L L+
Sbjct: 5 LVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLNALQT 64
Query: 104 SLKEQGSDLMIR----FGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKV 159
+L E+G L+ F ++ + + + +F + E++ RQ A V++TL V
Sbjct: 65 ALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKTLPSV 124
>sp|Q9KS67|CRY2_VIBCH Cryptochrome-like protein cry2 OS=Vibrio cholerae serotype O1
(strain ATCC 39315 / El Tor Inaba N16961) GN=cry2 PE=1
SV=1
Length = 504
Score = 40.0 bits (92), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 49/97 (50%), Gaps = 3/97 (3%)
Query: 48 VIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRIL--SRYSNEMLELVIFALEDLRKS 104
++W K+DLR+ DH L AA + + + LY+F+ +L + YS V +L+ + +
Sbjct: 6 LVWLKRDLRLTDHAPLQAALTSGRPTLLLYLFEPMLLGDAHYSERHWRFVWQSLQAINRD 65
Query: 105 LKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141
L + +++I + + E ++++ +EV
Sbjct: 66 LAQSKGEVLIVTSDWQTCFARIAERYAIEAIYSHQEV 102
>sp|Q9A919|DHMA_CAUCR Haloalkane dehalogenase OS=Caulobacter crescentus (strain ATCC
19089 / CB15) GN=dhmA PE=3 SV=1
Length = 302
Score = 39.7 bits (91), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 31/50 (62%), Gaps = 4/50 (8%)
Query: 426 EGP----AILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKP 471
EGP ILL+HG ++ YR I ++ G+RV A L+GFGRS+KP
Sbjct: 41 EGPKDQRPILLMHGEPSWAYLYRKVIAELVAKGHRVVAPDLVGFGRSDKP 90
>sp|B8H3S9|DHMA_CAUCN Haloalkane dehalogenase OS=Caulobacter crescentus (strain NA1000 /
CB15N) GN=dhmA PE=3 SV=1
Length = 302
Score = 39.7 bits (91), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 31/50 (62%), Gaps = 4/50 (8%)
Query: 426 EGP----AILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKP 471
EGP ILL+HG ++ YR I ++ G+RV A L+GFGRS+KP
Sbjct: 41 EGPKDQRPILLMHGEPSWAYLYRKVIAELVAKGHRVVAPDLVGFGRSDKP 90
>sp|Q98C03|DHAA_RHILO Haloalkane dehalogenase OS=Rhizobium loti (strain MAFF303099)
GN=dhaA PE=3 SV=1
Length = 309
Score = 39.3 bits (90), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 418 IQYTVAGKEGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNIVY 475
+ Y AG GP +L +HG +R+ I +A G R A L+G+G+S KP+I Y
Sbjct: 27 MSYVEAGASGPTVLFLHGNPTSSHIWRNIIPHVAPFG-RCIAPDLIGYGQSGKPDIDY 83
>sp|P80299|HYES_RAT Bifunctional epoxide hydrolase 2 OS=Rattus norvegicus GN=Ephx2 PE=1
SV=1
Length = 554
Score = 39.3 bits (90), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 415 GYQIQYTVAGKEGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKP 471
G ++ + G GPAI L HGF +R I +A G RV AI + G+G S P
Sbjct: 245 GIRLHFVEMGS-GPAICLCHGFPESWFSWRYQIPALAQAGFRVLAIDMKGYGDSSSP 300
>sp|Q43125|CRY1_ARATH Cryptochrome-1 OS=Arabidopsis thaliana GN=CRY1 PE=1 SV=2
Length = 681
Score = 38.9 bits (89), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 61/120 (50%), Gaps = 12/120 (10%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVF-----DHRILSRYSNEMLELVIFALEDLR 102
++WF++DLRV+D+ L AA + V+ L+V+ H R S L+ +L L
Sbjct: 15 IVWFRRDLRVEDNPALAAAVRAGPVIALFVWAPEEEGHYHPGRVSRWWLK---NSLAQLD 71
Query: 103 KSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLV 162
SL+ G+ L+ + R + + L++ VK+T A + HL +++V + AK L
Sbjct: 72 SSLRSLGTCLITK--RSTDSVASLLDVVKSTG--ASQIFFNHLYDPLSLVRDHRAKDVLT 127
>sp|Q5FMT1|PIP_LACAC Proline iminopeptidase OS=Lactobacillus acidophilus (strain ATCC
700396 / NCK56 / N2 / NCFM) GN=pip PE=3 SV=1
Length = 293
Score = 38.9 bits (89), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 10/101 (9%)
Query: 415 GYQIQYTVAGK---EGPAILLVHGFGAFLEHYR--DNIYDIADGGNRVWAITLLGFGRSE 469
GY+ Y + G+ + P +LL G G+ ++ D + I D R+ LG G S
Sbjct: 12 GYETHYRIVGRRSEKSPLVLLHGGPGSTHNYFEVLDKLAKIDD--RRIIMYDQLGCGNSS 69
Query: 470 KPNI---VYTELMWSELLRDFTVEVVGEPVHLIGNSIGGMF 507
P+ +YT+ W + L+ + +HL+G S GGM
Sbjct: 70 IPDDHPELYTKETWVKELKTLREHLALRKIHLLGQSWGGML 110
>sp|P34913|HYES_HUMAN Bifunctional epoxide hydrolase 2 OS=Homo sapiens GN=EPHX2 PE=1 SV=2
Length = 555
Score = 38.5 bits (88), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Query: 427 GPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNIVY---TELMWSEL 483
GPA+ L HGF +R I +A G RV A+ + G+G S P + E++ E+
Sbjct: 258 GPAVCLCHGFPESWYSWRYQIPALAQAGYRVLAMDMKGYGESSAPPEIEEYCMEVLCKEM 317
Query: 484 LRDFTVEVVGEPVHLIGNSIGGMFL 508
+ + + V IG+ GGM +
Sbjct: 318 VTFLDKLGLSQAV-FIGHDWGGMLV 341
>sp|P24640|LIP3_MORS1 Lipase 3 OS=Moraxella sp. (strain TA144) GN=lip3 PE=1 SV=1
Length = 315
Score = 38.1 bits (87), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 38/83 (45%), Gaps = 8/83 (9%)
Query: 427 GPAILLVHGFGAFLEHYRDNIYDIADG--GNRVWAITLLGFGRSEKPNIV--YTELMWSE 482
G +LL+HGFG +DN IAD G + LLGFG S KP + +
Sbjct: 67 GEPLLLIHGFGG----NKDNFTRIADKLEGYHLIIPDLLGFGNSSKPMTADYRADAQATR 122
Query: 483 LLRDFTVEVVGEPVHLIGNSIGG 505
L + + H+ GNS+GG
Sbjct: 123 LHELMQAKGLASNTHVGGNSMGG 145
>sp|O52866|HYES_CORS2 Soluble epoxide hydrolase OS=Corynebacterium sp. (strain C12) PE=1
SV=3
Length = 286
Score = 38.1 bits (87), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 59/137 (43%), Gaps = 16/137 (11%)
Query: 414 NGYQIQYTVAGKEGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNI 473
NGY++ Y AG P +LL HG+ +R+ I +A+ + A L G G SEKP
Sbjct: 13 NGYRMHYVTAGSGYPLVLL-HGWPQSWYEWRNVIPALAEQFTVI-APDLRGLGDSEKPMT 70
Query: 474 VYTELMWSELLRDFTVEVVGEPVHLIGNSIGGMFLSTNLTRGKLYAFLLSVNYLLSRSII 533
+ + + +R+ + + V +IG+ GG AF + + +R ++
Sbjct: 71 GFDKRTMATDVRELVSHLGYDKVGVIGHDWGGSV-----------AFYFAYD---NRDLV 116
Query: 534 CRLFCCHCCLSLACGGQ 550
RLF L G
Sbjct: 117 ERLFILDMIPGLIKAGD 133
>sp|D5H0J3|PIP_LACCS Proline iminopeptidase OS=Lactobacillus crispatus (strain ST1)
GN=pip PE=3 SV=1
Length = 293
Score = 38.1 bits (87), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 6/99 (6%)
Query: 415 GYQIQYTVAGK--EGPAILLVHGFGAFLEHYRDNIYDIADGGNR-VWAITLLGFGRSEKP 471
GY+ Y + G+ E ++L+HG +Y + + +A+ NR + LG G+S P
Sbjct: 12 GYETYYRIVGRRSEKTPLVLLHGGPGSSHNYFEVLDKLAEIDNRRIIMYDQLGCGKSSIP 71
Query: 472 NI---VYTELMWSELLRDFTVEVVGEPVHLIGNSIGGMF 507
+ +YT+ W + L + +HL+G S GGM
Sbjct: 72 DDHPELYTKETWVKELMALREHLALRKIHLLGQSWGGML 110
>sp|Q6Q2C2|HYES_PIG Bifunctional epoxide hydrolase 2 OS=Sus scrofa GN=EPHX2 PE=2 SV=1
Length = 555
Score = 37.7 bits (86), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 415 GYQIQYTVAGKEGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKP 471
G ++ + G GPA+ L HGF +R I +A G RV A+ + G+G S P
Sbjct: 247 GVRLHFVEMGS-GPAVCLCHGFPESWFSWRYQIPALAQAGFRVLAVDMKGYGESSAP 302
>sp|P34914|HYES_MOUSE Bifunctional epoxide hydrolase 2 OS=Mus musculus GN=Ephx2 PE=1 SV=2
Length = 554
Score = 37.7 bits (86), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 415 GYQIQYTVAGKEGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKP 471
G ++ + G GPA+ L HGF +R I +A G RV AI + G+G S P
Sbjct: 245 GIRLHFVEMGS-GPALCLCHGFPESWFSWRYQIPALAQAGFRVLAIDMKGYGDSSSP 300
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.137 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 211,942,683
Number of Sequences: 539616
Number of extensions: 9206329
Number of successful extensions: 24821
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 78
Number of HSP's that attempted gapping in prelim test: 24736
Number of HSP's gapped (non-prelim): 134
length of query: 563
length of database: 191,569,459
effective HSP length: 123
effective length of query: 440
effective length of database: 125,196,691
effective search space: 55086544040
effective search space used: 55086544040
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)