BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008519
(563 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1II2|A Chain A, Crystal Structure Of Phosphoenolpyruvate Carboxykinase
(Pepck) From Trypanosoma Cruzi
pdb|1II2|B Chain B, Crystal Structure Of Phosphoenolpyruvate Carboxykinase
(Pepck) From Trypanosoma Cruzi
Length = 524
Score = 310 bits (795), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 159/355 (44%), Positives = 209/355 (58%), Gaps = 19/355 (5%)
Query: 147 NLSPAELYEQAIKYEQGSFIXXXXXXXXXXXXKTGRSPRDKRVVKDETTEHELWWGKMK- 205
NL EL + A+K E+ S + KTGRSP DKR+V + + WGK+
Sbjct: 7 NLLSPELVQWALKIEKDSRLTARGALAVMSYAKTGRSPLDKRIVDTDDVRENVDWGKVNM 66
Query: 206 ------------------NHDVQVFVNDQFLNWDPQNRVKVRIVSARAYHSLFMHNMCIR 247
+ +FV D F D + R+KVR+ + R YH+LFM +M I
Sbjct: 67 KLSEESFARVRKIAKEFLDTREHLFVVDCFAGHDERYRLKVRVFTTRPYHALFMRDMLIV 126
Query: 248 PTPEELENFGTPDFTIYNAGQFPCNRYTHYMTSSTSIDLNLARREMVILGTQYAGEMKKG 307
PTPEEL FG PD+ IYNAG+ + +TS+T + LN RE VILGT+YAGEMKKG
Sbjct: 127 PTPEELATFGEPDYVIYNAGECKADPSIPGLTSTTCVALNFKTREQVILGTEYAGEMKKG 186
Query: 308 LFSVMHYLMPKRQILSLHSGCNMGKDGDVAXXXXXXXXXXXXXXXDHNRYLIGDDEHCWG 367
+ +VM LMP+ L +H+ N+GK GDV D +R LIGDDEH W
Sbjct: 187 ILTVMFELMPQMNHLCMHASANVGKQGDVTVFFGLSGTGKTTLSADPHRNLIGDDEHVWT 246
Query: 368 DNGVSNIEGGCYAKCIDLSREKEPDIWNAIKFGAVLENVVFDEHTREVDYSDKSVTENTR 427
D GV NIEGGCYAK I L+ + E DI++A++FGAV EN V D+ T E+D+ D+S+ +NTR
Sbjct: 247 DRGVFNIEGGCYAKAIGLNPKTEKDIYDAVRFGAVAENCVLDKRTGEIDFYDESICKNTR 306
Query: 428 AAYPIEYIPNAKIPCVGPHPKNVILLACDAFGVLPPVSKLNLAQTMYHFISGYTA 482
AYP+ +I A + HPKNVI L DAFGV+PPV++L AQ M+ F+ GYTA
Sbjct: 307 VAYPLSHIEGALSKAIAGHPKNVIFLTNDAFGVMPPVARLTSAQAMFWFVMGYTA 361
>pdb|1AYL|A Chain A, Phosphoenolpyruvate Carboxykinase
Length = 541
Score = 267 bits (682), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 153/372 (41%), Positives = 203/372 (54%), Gaps = 34/372 (9%)
Query: 144 VLYNLSPAELYEQAIK-----YEQGSFIXXXXXXXXXXXXKTGRSPRDKRVVKDETTEHE 198
++YN S LY++ + YE+G + TGRSP+DK +V+D+TT
Sbjct: 23 IVYNPSYDLLYQEELDPSLTGYERG-VLTNLGAVAVDTGIFTGRSPKDKYIVRDDTTRDT 81
Query: 199 LWW---GKMKNHDV---------------------QVFVNDQFLNWDPQNRVKVRIVSAR 234
WW GK KN + ++FV D F +P R+ VR ++
Sbjct: 82 FWWADKGKGKNDNKPLSPETWQHLKGLVTRQLSGKRLFVVDAFCGANPDTRLSVRFITEV 141
Query: 235 AYHSLFMHNMCIRPTPEELENFGTPDFTIYNAGQFPCNRYTHY-MTSSTSIDLNLARREM 293
A+ + F+ NM IRP+ EEL F PDF + N + ++ + S + NL R
Sbjct: 142 AWQAHFVKNMFIRPSDEELAGF-KPDFIVMNGAKCTNPQWKEQGLNSENFVAFNLTERMQ 200
Query: 294 VILGTQYAGEMKKGLFSVMHYLMPKRQILSLHSGCNMGKDGDVAXXXXXXXXXXXXXXXD 353
+I GT Y GEMKKG+FS+M+YL+P + I S+H N+G+ GDVA D
Sbjct: 201 LIGGTWYGGEMKKGMFSMMNYLLPLKGIASMHCSANVGEKGDVAVFFGLSGTGKTTLSTD 260
Query: 354 HNRYLIGDDEHCWGDNGVSNIEGGCYAKCIDLSREKEPDIWNAIKFGAVLENVVFDEHTR 413
R LIGDDEH W D+GV N EGGCYAK I LS+E EP+I+NAI+ A+LENV E
Sbjct: 261 PKRRLIGDDEHGWDDDGVFNFEGGCYAKTIKLSKEAEPEIYNAIRRDALLENVTVREDG- 319
Query: 414 EVDYSDKSVTENTRAAYPIEYIPNAKIPCV-GPHPKNVILLACDAFGVLPPVSKLNLAQT 472
+D+ D S TENTR +YPI +I N P H VI L DAFGVLPPVS+L QT
Sbjct: 320 TIDFDDGSKTENTRVSYPIYHIDNIVKPVSKAGHATKVIFLTADAFGVLPPVSRLTADQT 379
Query: 473 MYHFISGYTALL 484
YHF+SG+TA L
Sbjct: 380 QYHFLSGFTAKL 391
>pdb|1K3C|A Chain A, Phosphoenolpyruvate Carboxykinase In Complex With Adp,
Alf3 And Pyruvate
pdb|1K3D|A Chain A, Phosphoenolpyruvate Carboxykinase In Complex With Adp And
Alf3
pdb|1OS1|A Chain A, Structure Of Phosphoenolpyruvate Carboxykinase Complexed
With Atp,Mg, Ca And Pyruvate.
pdb|2OLQ|A Chain A, How Does An Enzyme Recognize Co2?
pdb|2OLR|A Chain A, Crystal Structure Of Escherichia Coli Phosphoenolpyruvate
Carboxykinase Complexed With Carbon Dioxide, Mg2+, Atp
pdb|1AQ2|A Chain A, Phosphoenolpyruvate Carboxykinase
pdb|2PXZ|X Chain X, E. Coli Phosphoenolpyruvate Carboxykinase (Pepck)
Complexed With Atp, Mg2+, Mn2+, Carbon Dioxide And
Oxaloacetate
Length = 540
Score = 266 bits (681), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 153/372 (41%), Positives = 203/372 (54%), Gaps = 34/372 (9%)
Query: 144 VLYNLSPAELYEQAIK-----YEQGSFIXXXXXXXXXXXXKTGRSPRDKRVVKDETTEHE 198
++YN S LY++ + YE+G + TGRSP+DK +V+D+TT
Sbjct: 23 IVYNPSYDLLYQEELDPSLTGYERG-VLTNLGAVAVDTGIFTGRSPKDKYIVRDDTTRDT 81
Query: 199 LWW---GKMKNHDV---------------------QVFVNDQFLNWDPQNRVKVRIVSAR 234
WW GK KN + ++FV D F +P R+ VR ++
Sbjct: 82 FWWADKGKGKNDNKPLSPETWQHLKGLVTRQLSGKRLFVVDAFCGANPDTRLSVRFITEV 141
Query: 235 AYHSLFMHNMCIRPTPEELENFGTPDFTIYNAGQFPCNRYTHY-MTSSTSIDLNLARREM 293
A+ + F+ NM IRP+ EEL F PDF + N + ++ + S + NL R
Sbjct: 142 AWQAHFVKNMFIRPSDEELAGF-KPDFIVMNGAKCTNPQWKEQGLNSENFVAFNLTERMQ 200
Query: 294 VILGTQYAGEMKKGLFSVMHYLMPKRQILSLHSGCNMGKDGDVAXXXXXXXXXXXXXXXD 353
+I GT Y GEMKKG+FS+M+YL+P + I S+H N+G+ GDVA D
Sbjct: 201 LIGGTWYGGEMKKGMFSMMNYLLPLKGIASMHCSANVGEKGDVAVFFGLSGTGKTTLSTD 260
Query: 354 HNRYLIGDDEHCWGDNGVSNIEGGCYAKCIDLSREKEPDIWNAIKFGAVLENVVFDEHTR 413
R LIGDDEH W D+GV N EGGCYAK I LS+E EP+I+NAI+ A+LENV E
Sbjct: 261 PKRRLIGDDEHGWDDDGVFNFEGGCYAKTIKLSKEAEPEIYNAIRRDALLENVTVREDG- 319
Query: 414 EVDYSDKSVTENTRAAYPIEYIPNAKIPCV-GPHPKNVILLACDAFGVLPPVSKLNLAQT 472
+D+ D S TENTR +YPI +I N P H VI L DAFGVLPPVS+L QT
Sbjct: 320 TIDFDDGSKTENTRVSYPIYHIDNIVKPVSKAGHATKVIFLTADAFGVLPPVSRLTADQT 379
Query: 473 MYHFISGYTALL 484
YHF+SG+TA L
Sbjct: 380 QYHFLSGFTAKL 391
>pdb|2PY7|X Chain X, Crystal Structure Of E. Coli Phosphoenolpyruvate
Carboxykinase Mutant Lys213ser Complexed With
Atp-mg2+-mn2+
Length = 540
Score = 265 bits (677), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 152/372 (40%), Positives = 202/372 (54%), Gaps = 34/372 (9%)
Query: 144 VLYNLSPAELYEQAIK-----YEQGSFIXXXXXXXXXXXXKTGRSPRDKRVVKDETTEHE 198
++YN S LY++ + YE+G + TGRSP+DK +V+D+TT
Sbjct: 23 IVYNPSYDLLYQEELDPSLTGYERG-VLTNLGAVAVDTGIFTGRSPKDKYIVRDDTTRDT 81
Query: 199 LWW---GKMKNHDV---------------------QVFVNDQFLNWDPQNRVKVRIVSAR 234
WW GK KN + ++FV D F +P R+ VR ++
Sbjct: 82 FWWADKGKGKNDNKPLSPETWQHLKGLVTRQLSGKRLFVVDAFCGANPDTRLSVRFITEV 141
Query: 235 AYHSLFMHNMCIRPTPEELENFGTPDFTIYNAGQFPCNRYTHY-MTSSTSIDLNLARREM 293
A+ + F+ NM IRP+ EEL F PDF + N + ++ + S + NL R
Sbjct: 142 AWQAHFVKNMFIRPSDEELAGF-KPDFIVMNGAKCTNPQWKEQGLNSENFVAFNLTERMQ 200
Query: 294 VILGTQYAGEMKKGLFSVMHYLMPKRQILSLHSGCNMGKDGDVAXXXXXXXXXXXXXXXD 353
+I GT Y GEMK G+FS+M+YL+P + I S+H N+G+ GDVA D
Sbjct: 201 LIGGTWYGGEMKSGMFSMMNYLLPLKGIASMHCSANVGEKGDVAVFFGLSGTGKTTLSTD 260
Query: 354 HNRYLIGDDEHCWGDNGVSNIEGGCYAKCIDLSREKEPDIWNAIKFGAVLENVVFDEHTR 413
R LIGDDEH W D+GV N EGGCYAK I LS+E EP+I+NAI+ A+LENV E
Sbjct: 261 PKRRLIGDDEHGWDDDGVFNFEGGCYAKTIKLSKEAEPEIYNAIRRDALLENVTVREDG- 319
Query: 414 EVDYSDKSVTENTRAAYPIEYIPNAKIPCV-GPHPKNVILLACDAFGVLPPVSKLNLAQT 472
+D+ D S TENTR +YPI +I N P H VI L DAFGVLPPVS+L QT
Sbjct: 320 TIDFDDGSKTENTRVSYPIYHIDNIVKPVSKAGHATKVIFLTADAFGVLPPVSRLTADQT 379
Query: 473 MYHFISGYTALL 484
YHF+SG+TA L
Sbjct: 380 QYHFLSGFTAKL 391
>pdb|1YVY|A Chain A, Crystal Strucutre Of Anaerobiospirillum Succiniciproducens
Phosphoenolpyruvate Carboxykinase
pdb|1YVY|B Chain B, Crystal Strucutre Of Anaerobiospirillum Succiniciproducens
Phosphoenolpyruvate Carboxykinase
pdb|1YTM|A Chain A, Crystal Structure Of Phosphoenolpyruvate Carboxykinase Of
Anaerobiospirillum Succiniciproducens Complexed With
Atp, Oxalate, Magnesium And Manganese Ions
pdb|1YTM|B Chain B, Crystal Structure Of Phosphoenolpyruvate Carboxykinase Of
Anaerobiospirillum Succiniciproducens Complexed With
Atp, Oxalate, Magnesium And Manganese Ions
Length = 532
Score = 265 bits (676), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 156/389 (40%), Positives = 219/389 (56%), Gaps = 40/389 (10%)
Query: 132 ISVSDSSLKF-----THVLYNLSPAELYEQAIK-----YEQGSFIXXXXXXXXXXXXKTG 181
+S+S+S K+ T++++N S EL+ + +E+G+ + TG
Sbjct: 1 MSLSESLAKYGITGATNIVHNPSHEELFAAETQASLEGFEKGT-VTEMGAVNVMTGVYTG 59
Query: 182 RSPRDKRVVKDETTEHELWW--GKMKNHDVQV---------------------FVNDQFL 218
RSP+DK +VK+E ++ E+WW + KN + V +V D F
Sbjct: 60 RSPKDKFIVKNEASK-EIWWTSDEFKNDNKPVTEEAWAQLKALAGKELSNKPLYVVDLFC 118
Query: 219 NWDPQNRVKVRIVSARAYHSLFMHNMCIRPTPEELENFGTPDFTIYNAGQFPCNRYTHY- 277
+ R+K+R V A+ + F+ NM IRPT EEL+ F PDF + NA + +
Sbjct: 119 GANENTRLKIRFVMEVAWQAHFVTNMFIRPTEEELKGF-EPDFVVLNASKAKVENFKELG 177
Query: 278 MTSSTSIDLNLARREMVILGTQYAGEMKKGLFSVMHYLMPKRQILSLHSGCNMGKDG-DV 336
+ S T++ NLA + +IL T Y GEMKKG+FS+M++ +P + I ++H N +G +
Sbjct: 178 LNSETAVVFNLAEKMQIILNTWYGGEMKKGMFSMMNFYLPLQGIAAMHCSANTDLEGKNT 237
Query: 337 AXXXXXXXXXXXXXXXDHNRYLIGDDEHCWGDNGVSNIEGGCYAKCIDLSREKEPDIWNA 396
A D R LIGDDEH W D+GV N EGGCYAK I+LS+E EPDIW A
Sbjct: 238 AIFFGLSGTGKTTLSTDPKRLLIGDDEHGWDDDGVFNFEGGCYAKVINLSKENEPDIWGA 297
Query: 397 IKFGAVLENVVFDEHTREVDYSDKSVTENTRAAYPIEYIPNAKIPCV-GPHPKNVILLAC 455
IK A+LENV D + + VD++DKSVTENTR +YPI +I N P P K VI L+
Sbjct: 298 IKRNALLENVTVDANGK-VDFADKSVTENTRVSYPIFHIKNIVKPVSKAPAAKRVIFLSA 356
Query: 456 DAFGVLPPVSKLNLAQTMYHFISGYTALL 484
DAFGVLPPVS L+ QT Y+F+SG+TA L
Sbjct: 357 DAFGVLPPVSILSKEQTKYYFLSGFTAKL 385
>pdb|1J3B|A Chain A, Crystal Structure Of Atp-dependent Phosphoenolpyruvate
Carboxykinase From Thermus Thermophilus Hb8
pdb|1J3B|B Chain B, Crystal Structure Of Atp-dependent Phosphoenolpyruvate
Carboxykinase From Thermus Thermophilus Hb8
pdb|1XKV|A Chain A, Crystal Structure Of Atp-Dependent Phosphoenolpyruvate
Carboxykinase From Thermus Thermophilus Hb8
pdb|1XKV|B Chain B, Crystal Structure Of Atp-Dependent Phosphoenolpyruvate
Carboxykinase From Thermus Thermophilus Hb8
pdb|2PC9|A Chain A, Crystal Structure Of Atp-Dependent Phosphoenolpyruvate
Carboxykinase From Thermus Thermophilus Hb8
pdb|2PC9|B Chain B, Crystal Structure Of Atp-Dependent Phosphoenolpyruvate
Carboxykinase From Thermus Thermophilus Hb8
pdb|2PC9|C Chain C, Crystal Structure Of Atp-Dependent Phosphoenolpyruvate
Carboxykinase From Thermus Thermophilus Hb8
pdb|2PC9|D Chain D, Crystal Structure Of Atp-Dependent Phosphoenolpyruvate
Carboxykinase From Thermus Thermophilus Hb8
Length = 529
Score = 258 bits (658), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 133/326 (40%), Positives = 192/326 (58%), Gaps = 24/326 (7%)
Query: 180 TGRSPRDKRVVKDETTEHELWWGKMKN------------------HDVQVFVNDQFLNWD 221
TGRSP+DK VV++ E E+WWG++ + ++V D + D
Sbjct: 50 TGRSPKDKFVVREPEVEGEIWWGEVNQPFAPEAFEALYQRVVQYLSERDLYVQDLYAGAD 109
Query: 222 PQNRVKVRIVSARAYHSLFMHNMCIRP----TPEELENFGTPDFTIYNAGQFPCNRYTHY 277
+ R+ VR+V+ +H+LF NM I P +E+E F P FT+ +A F
Sbjct: 110 RRYRLAVRVVTESPWHALFARNMFILPRRFGNDDEVEAF-VPGFTVVHAPYFQAVPERDG 168
Query: 278 MTSSTSIDLNLARREMVILGTQYAGEMKKGLFSVMHYLMPKRQILSLHSGCNMGKDGDVA 337
S + ++ RR ++I+GT+YAGE+KK +F+VM+YLMPKR + +H+ N+GK+GDVA
Sbjct: 169 TRSEVFVGISFQRRLVLIVGTKYAGEIKKSIFTVMNYLMPKRGVFPMHASANVGKEGDVA 228
Query: 338 XXXXXXXXXXXXXXXDHNRYLIGDDEHCWGDNGVSNIEGGCYAKCIDLSREKEPDIWNAI 397
D R LIGDDEH W ++GV N EGGCYAK I LS E EP I+ A
Sbjct: 229 VFFGLSGTGKTTLSTDPERPLIGDDEHGWSEDGVFNFEGGCYAKVIRLSPEHEPLIYKAS 288
Query: 398 -KFGAVLENVVFDEHTREVDYSDKSVTENTRAAYPIEYIPNAKIPCVGPHPKNVILLACD 456
+F A+LENVV + +R V + D S TENTR++YPI ++ N V HP+ + L+ D
Sbjct: 289 NQFEAILENVVVNPESRRVQWDDDSKTENTRSSYPIAHLENVVESGVAGHPRAIFFLSAD 348
Query: 457 AFGVLPPVSKLNLAQTMYHFISGYTA 482
A+GVLPP+++L+ + MY+F+SGYTA
Sbjct: 349 AYGVLPPIARLSPEEAMYYFLSGYTA 374
>pdb|1OEN|A Chain A, Phosphoenolpyruvate Carboxykinase
Length = 540
Score = 257 bits (657), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 149/370 (40%), Positives = 199/370 (53%), Gaps = 34/370 (9%)
Query: 144 VLYNLSPAELYEQAIK-----YEQGSFIXXXXXXXXXXXXKTGRSPRDKRVVKDETTEHE 198
++YN S LY++ + YE+G + TGRSP+DK +V+D+TT
Sbjct: 23 IVYNPSYDLLYQEELDPSLTGYERG-VLTNLGAVAVDTGIFTGRSPKDKYIVRDDTTRDT 81
Query: 199 LWW---GKMKNHDV---------------------QVFVNDQFLNWDPQNRVKVRIVSAR 234
WW GK KN + ++FV D F +P R+ VR ++
Sbjct: 82 FWWADKGKGKNDNKPLSPETWQHLKGLVTRQLSGKRLFVVDAFCGANPDTRLSVRFITEV 141
Query: 235 AYHSLFMHNMCIRPTPEELENFGTPDFTIYNAGQFPCNRYTHY-MTSSTSIDLNLARREM 293
A+ + F+ NM IRP+ EEL F PDF + N + ++ + S + NL R
Sbjct: 142 AWQAHFVKNMFIRPSDEELAGF-KPDFIVMNGAKCTNPQWKEQGLNSENFVAFNLTERMQ 200
Query: 294 VILGTQYAGEMKKGLFSVMHYLMPKRQILSLHSGCNMGKDGDVAXXXXXXXXXXXXXXXD 353
+I GT Y GEMKKG+FS+M+YL+P + I S+H N+G+ GDVA D
Sbjct: 201 LIGGTWYGGEMKKGMFSMMNYLLPLKGIASMHCSANVGEAGDVAVFFGLSGSGKTTLSTD 260
Query: 354 HNRYLIGDDEHCWGDNGVSNIEGGCYAKCIDLSREKEPDIWNAIKFGAVLENVVFDEHTR 413
R LIGDDEH W D+GV N EGG YAK I LS+E EP+I+ AI+ A+LENV
Sbjct: 261 PARRLIGDDEHGWDDDGVFNFEGGSYAKTIKLSKEAEPEIYAAIRRDALLENVTV-RAGG 319
Query: 414 EVDYSDKSVTENTRAAYPIEYIPNAKIPCV-GPHPKNVILLACDAFGVLPPVSKLNLAQT 472
+D+ D S TENTR +YPI +I N P H VI L DAFGVLPPVS+L QT
Sbjct: 320 TIDFDDGSKTENTRVSYPIYHIDNIVKPVSKAGHATKVIFLTADAFGVLPPVSRLTADQT 379
Query: 473 MYHFISGYTA 482
YHF+SG+TA
Sbjct: 380 QYHFLSGFTA 389
>pdb|1YGG|A Chain A, Crystal Structure Of Phosphoenolpyruvate Carboxykinase
From Actinobacillus Succinogenes
pdb|1YLH|A Chain A, Crystal Structure Of Phosphoenolpyruvate Carboxykinase
From Actinobaccilus Succinogenes In Complex With
Manganese And Pyruvate
Length = 560
Score = 256 bits (655), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 151/374 (40%), Positives = 205/374 (54%), Gaps = 37/374 (9%)
Query: 143 HVLYNLSPAELYEQAIK-----YEQGSFIXXXXXXXXXXXXKTGRSPRDKRVVKDETTEH 197
++YN S +L+E+ K +++G+ TGRSP+DK +V DETT+
Sbjct: 43 EIVYNPSYEQLFEEETKPGLEGFDKGTLTTLGAVAVDTGIF-TGRSPKDKYIVCDETTKD 101
Query: 198 ELWWGK--MKNHDV---------------------QVFVNDQFLNWDPQNRVKVRIVSAR 234
+WW KN + ++FV + + ++R+ VR+V+
Sbjct: 102 TVWWNSEAAKNDNKPMTQETWKSLRELVAKQLSGKRLFVVEGYCGASEKHRIGVRMVTEV 161
Query: 235 AYHSLFMHNMCIRPTPEELENFGTPDFTIYNAGQFPC---NRYTHYMTSSTSIDLNLARR 291
A+ + F+ NM IRPT EEL+NF DFT+ N + C N + S + N+
Sbjct: 162 AWQAHFVKNMFIRPTDEELKNF-KADFTVLNGAK--CTNPNWKEQGLNSENFVAFNITEG 218
Query: 292 EMVILGTQYAGEMKKGLFSVMHYLMPKRQILSLHSGCNMGKDGDVAXXXXXXXXXXXXXX 351
+I GT Y GEMKKG+FS+M+Y +P + + S+H N+GKDGDVA
Sbjct: 219 IQLIGGTWYGGEMKKGMFSMMNYFLPLKGVASMHCSANVGKDGDVAIFFGLSGTGKTTLS 278
Query: 352 XDHNRYLIGDDEHCWGDNGVSNIEGGCYAKCIDLSREKEPDIWNAIKFGAVLENVVFDEH 411
D R LIGDDEH W ++GV N EGGCYAK I+LS+E EPDI+ AI+ A+LENVV
Sbjct: 279 TDPKRQLIGDDEHGWDESGVFNFEGGCYAKTINLSQENEPDIYGAIRRDALLENVVV-RA 337
Query: 412 TREVDYSDKSVTENTRAAYPIEYIPNAKIPCV-GPHPKNVILLACDAFGVLPPVSKLNLA 470
VD+ D S TENTR +YPI +I N P H VI L DAFGVLPPVSKL
Sbjct: 338 DGSVDFDDGSKTENTRVSYPIYHIDNIVRPVSKAGHATKVIFLTADAFGVLPPVSKLTPE 397
Query: 471 QTMYHFISGYTALL 484
QT Y+F+SG+TA L
Sbjct: 398 QTEYYFLSGFTAKL 411
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,506,758
Number of Sequences: 62578
Number of extensions: 597994
Number of successful extensions: 1014
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 977
Number of HSP's gapped (non-prelim): 8
length of query: 563
length of database: 14,973,337
effective HSP length: 104
effective length of query: 459
effective length of database: 8,465,225
effective search space: 3885538275
effective search space used: 3885538275
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)