BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008520
(563 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1AUA|A Chain A, Phosphatidylinositol Transfer Protein Sec14p From
Saccharomyces Cerevisiae
Length = 296
Score = 195 bits (495), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 97/239 (40%), Positives = 147/239 (61%), Gaps = 2/239 (0%)
Query: 93 DHHMMLRFLKARKFDIEKTKQMWGDMLQWRKEFGADTIMEDFEFKEIDEVLKYYPQGHHG 152
D +LRFL+ARKFD++ K+M+ + +WRK++G DTI++DF + E + K+YPQ +H
Sbjct: 51 DDSTLLRFLRARKFDVQLAKEMFENCEKWRKDYGTDTILQDFHYDEKPLIAKFYPQYYHK 110
Query: 153 VDKDGQPVYIEWLGQVDSNKLMQVTTMDRYLKYHVKEFERTFISKFPACSIAAKKHIDQS 212
DKDG+PVY E LG V+ +++ +VT+ +R LK V E+E + PACS AA ++ S
Sbjct: 111 TDKDGRPVYFEELGAVNLHEMNKVTSEERMLKNLVWEYESVVQYRLPACSRAAGHLVETS 170
Query: 213 TTILDVQGVGLKNFNKAARDLVQRIQKIDGDNYPETLNRMFIVNAGSGFRLLWNTVKSFL 272
TI+D++G+ + + + V+ I + YPE + + +I+NA GF + K FL
Sbjct: 171 CTIMDLKGISISS-AYSVMSYVREASYISQNYYPERMGKFYIINAPFGFSTAFRLFKPFL 229
Query: 273 DPKTTAKIHVLGNKYQSKLLEIIDANELPDFLGGTCTCAD-KGGCMRSDKGPWNDPEIM 330
DP T +KI +LG+ YQ +LL+ I A LP GG + KGG SD GPW DP+ +
Sbjct: 230 DPVTVSKIFILGSSYQKELLKQIPAENLPVKFGGKSEVDESKGGLYLSDIGPWRDPKYI 288
>pdb|3B74|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylethanolamine
pdb|3B7N|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylinositol
pdb|3B7Q|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylcholine
pdb|3B7Q|B Chain B, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylcholine
pdb|3B7Z|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylcholine Or Phosphatidylinositol
Length = 320
Score = 180 bits (456), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 101/272 (37%), Positives = 161/272 (59%), Gaps = 10/272 (3%)
Query: 66 LNAEEMQAVDAFRQALVLDELLPAKHDDHHMMLRFLKARKFDIEKTKQMWGDMLQWRKEF 125
L E+ +A+ FR +++L++ + DD +LRFL+ARKFDI + +M+ + +WR+E+
Sbjct: 35 LTKEQEEALLQFR-SILLEKNYKERLDDS-TLLRFLRARKFDINASVEMFVETERWREEY 92
Query: 126 GADTIMEDFEF------KEIDEVLKYYPQGHHGVDKDGQPVYIEWLGQVDSNKLMQVTTM 179
GA+TI+ED+E KE ++ K YPQ +H VDKDG+P+Y E LG ++ K+ ++TT
Sbjct: 93 GANTIIEDYENNKEAEDKERIKLAKMYPQYYHHVDKDGRPLYFEELGGINLKKMYKITTE 152
Query: 180 DRYLKYHVKEFERTFISKFPACSIAAKKHIDQSTTILDVQGVGLKNFNKAARDLVQRIQK 239
+ L+ VKE+E + PACS A I+ S T+LD++G+ L N ++ +
Sbjct: 153 KQMLRNLVKEYELFATYRVPACSRRAGYLIETSCTVLDLKGISLSNAYHVL-SYIKDVAD 211
Query: 240 IDGDNYPETLNRMFIVNAGSGFRLLWNTVKSFLDPKTTAKIHVLGNKYQSKLLEIIDANE 299
I + YPE + + +I+++ GF ++ VK FLDP T +KI +LG+ Y+ +LL+ I
Sbjct: 212 ISQNYYPERMGKFYIIHSPFGFSTMFKMVKPFLDPVTVSKIFILGSSYKKELLKQIPIEN 271
Query: 300 LPDFLGGTCTCADKGG-CMRSDKGPWNDPEIM 330
LP GGT + SD GPW DP +
Sbjct: 272 LPVKYGGTSVLHNPNDKFYYSDIGPWRDPRYI 303
>pdb|3Q8G|A Chain A, Resurrection Of A Functional Phosphatidylinositol Transfer
Protein From A Pseudo-Sec14 Scaffold By Directed
Evolution
Length = 320
Score = 178 bits (451), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 100/272 (36%), Positives = 160/272 (58%), Gaps = 10/272 (3%)
Query: 66 LNAEEMQAVDAFRQALVLDELLPAKHDDHHMMLRFLKARKFDIEKTKQMWGDMLQWRKEF 125
L E+ +A+ FR +++L++ + DD +LRFL+ARKFDI + +M+ + +WR+E+
Sbjct: 35 LTKEQEEALLQFR-SILLEKNYKERLDDS-TLLRFLRARKFDINASVEMFVETERWREEY 92
Query: 126 GADTIMEDFEF------KEIDEVLKYYPQGHHGVDKDGQPVYIEWLGQVDSNKLMQVTTM 179
GA+TI+ED+E KE ++ K YPQ +H VDKDG+P+Y LG ++ K+ ++TT
Sbjct: 93 GANTIIEDYENNKEAEDKERIKLAKMYPQYYHHVDKDGRPLYFAELGGINLKKMYKITTE 152
Query: 180 DRYLKYHVKEFERTFISKFPACSIAAKKHIDQSTTILDVQGVGLKNFNKAARDLVQRIQK 239
+ L+ VKE+E + PACS A I+ S T+LD++G+ L N ++ +
Sbjct: 153 KQMLRNLVKEYELFATYRVPACSRRAGYLIETSCTVLDLKGISLSNAYHVL-SYIKDVAD 211
Query: 240 IDGDNYPETLNRMFIVNAGSGFRLLWNTVKSFLDPKTTAKIHVLGNKYQSKLLEIIDANE 299
I + YPE + + +I+++ GF ++ VK FLDP T +KI +LG+ Y+ +LL+ I
Sbjct: 212 ISQNYYPERMGKFYIIHSPFGFSTMFKMVKPFLDPVTVSKIFILGSSYKKELLKQIPIEN 271
Query: 300 LPDFLGGTCTCADKGG-CMRSDKGPWNDPEIM 330
LP GGT + SD GPW DP +
Sbjct: 272 LPVKYGGTSVLHNPNDKFYYSDIGPWRDPRYI 303
>pdb|1OLM|E Chain E, Supernatant Protein Factor In Complex With
Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized
Vitamin E And Cholesterol Biosynthesis
Length = 403
Score = 115 bits (287), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 77/256 (30%), Positives = 138/256 (53%), Gaps = 8/256 (3%)
Query: 58 MSVSIEDCLNAEEMQAVDAFRQALVLDELLPA-KHDDHHMMLRFLKARKFDIEKTKQMWG 116
MS + D L+ + +A+ FR+ + ++LPA + D + +LR+L+AR FD++K++ M
Sbjct: 1 MSGRVGD-LSPRQKEALAKFRENV--QDVLPALPNPDDYFLLRWLRARSFDLQKSEAMLR 57
Query: 117 DMLQWRKEFGADTIMEDFEFKEIDEVLKYYPQGHHGVDKDGQPVYIEWLGQVDSNKLMQV 176
+++RK+ D I+ ++ + + +Y G G D DG PV+ + +G +D+ L+
Sbjct: 58 KHVEFRKQKDIDNIIS---WQPPEVIQQYLSGGMCGYDLDGCPVWYDIIGPLDAKGLLFS 114
Query: 177 TTMDRYLKYHVKEFERTFISKFPACSIAAKKHIDQSTTILDVQGVGLKNFNKAARDLVQR 236
+ L+ ++E E + + + + ++ T I D +G+GLK+ K A +
Sbjct: 115 ASKQDLLRTKMRECE-LLLQECAHQTTKLGRKVETITIIYDCEGLGLKHLWKPAVEAYGE 173
Query: 237 IQKIDGDNYPETLNRMFIVNAGSGFRLLWNTVKSFLDPKTTAKIHVLGNKYQSKLLEIID 296
+ +NYPETL R+F+V A F + +N +K FL T KI VLG ++ LL+ I
Sbjct: 174 FLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLGANWKEVLLKHIS 233
Query: 297 ANELPDFLGGTCTCAD 312
+++P GGT T D
Sbjct: 234 PDQVPVEYGGTMTDPD 249
>pdb|1OLM|A Chain A, Supernatant Protein Factor In Complex With
Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized
Vitamin E And Cholesterol Biosynthesis
pdb|1OLM|C Chain C, Supernatant Protein Factor In Complex With
Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized
Vitamin E And Cholesterol Biosynthesis
Length = 403
Score = 114 bits (286), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 77/256 (30%), Positives = 138/256 (53%), Gaps = 8/256 (3%)
Query: 58 MSVSIEDCLNAEEMQAVDAFRQALVLDELLPA-KHDDHHMMLRFLKARKFDIEKTKQMWG 116
MS + D L+ + +A+ FR+ + ++LPA + D + +LR+L+AR FD++K++ M
Sbjct: 1 MSGRVGD-LSPRQKEALAKFRENV--QDVLPALPNPDDYFLLRWLRARSFDLQKSEAMLR 57
Query: 117 DMLQWRKEFGADTIMEDFEFKEIDEVLKYYPQGHHGVDKDGQPVYIEWLGQVDSNKLMQV 176
+++RK+ D I+ ++ + + +Y G G D DG PV+ + +G +D+ L+
Sbjct: 58 KHVEFRKQKDIDNIIS---WQPPEVIQQYLSGGMCGYDLDGCPVWYDIIGPLDAKGLLFS 114
Query: 177 TTMDRYLKYHVKEFERTFISKFPACSIAAKKHIDQSTTILDVQGVGLKNFNKAARDLVQR 236
+ L+ ++E E + + + + ++ T I D +G+GLK+ K A +
Sbjct: 115 ASKQDLLRTKMRECE-LLLQECAHQTTKLGRKVETITIIYDCEGLGLKHLWKPAVEAYGE 173
Query: 237 IQKIDGDNYPETLNRMFIVNAGSGFRLLWNTVKSFLDPKTTAKIHVLGNKYQSKLLEIID 296
+ +NYPETL R+F+V A F + +N +K FL T KI VLG ++ LL+ I
Sbjct: 174 FLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLGANWKEVLLKHIS 233
Query: 297 ANELPDFLGGTCTCAD 312
+++P GGT T D
Sbjct: 234 PDQVPVEYGGTMTDPD 249
>pdb|1O6U|A Chain A, The Crystal Structure Of Human Supernatant Protein Factor
pdb|1O6U|C Chain C, The Crystal Structure Of Human Supernatant Protein Factor
pdb|1O6U|E Chain E, The Crystal Structure Of Human Supernatant Protein Factor
Length = 403
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 73/248 (29%), Positives = 131/248 (52%), Gaps = 7/248 (2%)
Query: 66 LNAEEMQAVDAFRQALVLDELLPA-KHDDHHMMLRFLKARKFDIEKTKQMWGDMLQWRKE 124
L+ + +A+ FR+ + ++LPA + D + +LR+L+AR FD++K++ +++RK+
Sbjct: 8 LSPRQKEALAKFRENV--QDVLPALPNPDDYFLLRWLRARSFDLQKSEAXLRKHVEFRKQ 65
Query: 125 FGADTIMEDFEFKEIDEVLKYYPQGHHGVDKDGQPVYIEWLGQVDSNKLMQVTTMDRYLK 184
D I+ ++ + + +Y G G D DG PV+ + +G +D+ L+ + L+
Sbjct: 66 KDIDNIIS---WQPPEVIQQYLSGGXCGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLR 122
Query: 185 YHVKEFERTFISKFPACSIAAKKHIDQSTTILDVQGVGLKNFNKAARDLVQRIQKIDGDN 244
+E E + + + + ++ T I D +G+GLK+ K A + +N
Sbjct: 123 TKXRECE-LLLQECAHQTTKLGRKVETITIIYDCEGLGLKHLWKPAVEAYGEFLCXFEEN 181
Query: 245 YPETLNRMFIVNAGSGFRLLWNTVKSFLDPKTTAKIHVLGNKYQSKLLEIIDANELPDFL 304
YPETL R+F+V A F + +N +K FL T KI VLG ++ LL+ I +++P
Sbjct: 182 YPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIXVLGANWKEVLLKHISPDQVPVEY 241
Query: 305 GGTCTCAD 312
GGT T D
Sbjct: 242 GGTXTDPD 249
>pdb|1OIP|A Chain A, The Molecular Basis Of Vitamin E Retention: Structure Of
Human Alpha-tocopherol Transfer Protein
pdb|1OIZ|A Chain A, The Molecular Basis Of Vitamin E Retention: Structure Of
Human Alpha-Tocopherol Transfer Protein
pdb|1OIZ|B Chain B, The Molecular Basis Of Vitamin E Retention: Structure Of
Human Alpha-Tocopherol Transfer Protein
Length = 278
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 92/218 (42%), Gaps = 36/218 (16%)
Query: 96 MMLRFLKARKFDIEKTKQMWGDMLQWRKEFGADTIMEDFEFKEIDEVLKYYPQGHHGV-- 153
+LRFL+AR FD++ ++ + +WR E I D + I +LK G+HGV
Sbjct: 51 FLLRFLRARDFDLDLAWRLLKNYYKWRAE--CPEISADLHPRSIIGLLK---AGYHGVLR 105
Query: 154 --DKDGQPVYIEWLGQVD-----SNKLMQVTTMDRYLKYHVKEFERTFISKFPACSIAAK 206
D G V I + D + + +V+ + L E +R I
Sbjct: 106 SRDPTGSKVLIYRIAHWDPKVFTAYDVFRVSLITSELIVQEVETQRNGIK---------- 155
Query: 207 KHIDQSTTILDVQGVGLKNFNKAARDLVQRIQKIDGDNYPETLNRMFIVNAGSGFRLLWN 266
I D++G + + + ++I + D++P + + ++N F +++
Sbjct: 156 -------AIFDLEGWQFSHAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFS 208
Query: 267 TVKSFLDPKTTAKIHVLGNKYQSKLLEIIDANELPDFL 304
+K FL K +IH+ GN Y+ LL+ PD L
Sbjct: 209 MIKPFLTEKIKERIHMHGNNYKQSLLQ-----HFPDIL 241
>pdb|1R5L|A Chain A, Crystal Structure Of Human Alpha-tocopherol Transfer
Protein Bound To Its Ligand
Length = 262
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 91/218 (41%), Gaps = 36/218 (16%)
Query: 96 MMLRFLKARKFDIEKTKQMWGDMLQWRKEFGADTIMEDFEFKEIDEVLKYYPQGHHGV-- 153
+LRFL+AR FD++ ++ + +WR E I D + I +LK G+HGV
Sbjct: 35 FLLRFLRARDFDLDLAWRLLKNYYKWRAE--CPEISADLHPRSIIGLLK---AGYHGVLR 89
Query: 154 --DKDGQPVYIEWLGQVD-----SNKLMQVTTMDRYLKYHVKEFERTFISKFPACSIAAK 206
D G V I + D + + +V+ + L E +R I
Sbjct: 90 SRDPTGSKVLIYRIAHWDPKVFTAYDVFRVSLITSELIVQEVETQRNGIK---------- 139
Query: 207 KHIDQSTTILDVQGVGLKNFNKAARDLVQRIQKIDGDNYPETLNRMFIVNAGSGFRLLWN 266
I D++G + + + ++I + D++P + + ++N F +++
Sbjct: 140 -------AIFDLEGWQFSHAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFS 192
Query: 267 TVKSFLDPKTTAKIHVLGNKYQSKLLEIIDANELPDFL 304
+K FL K +IH GN Y+ LL+ PD L
Sbjct: 193 XIKPFLTEKIKERIHXHGNNYKQSLLQ-----HFPDIL 225
>pdb|3HY5|A Chain A, Crystal Structure Of Cralbp
Length = 316
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 58/244 (23%), Positives = 98/244 (40%), Gaps = 32/244 (13%)
Query: 89 AKHDDHHMMLRFLKARKFDIEKTKQMWGDMLQWRKEFGADTIMEDFEFKEIDEVLKYYPQ 148
+ D LRF++ARKF++ + ++ + +R ++ E F+ + V
Sbjct: 87 VQEKDSGFFLRFIRARKFNVGRAYELLRGYVNFRLQYP-----ELFDSLSPEAVRCTIEA 141
Query: 149 GHHGV----DKDGQPVYI----EWLGQ-VDSNKLMQVTTMDRYLKYHVKEFERTFISKFP 199
G+ GV DK G+ V + W Q + ++++Q ++ + E E T I+ F
Sbjct: 142 GYPGVLSSRDKYGRVVMLFNIENWQSQEITFDEILQAYC---FILEKLLENEETQINGF- 197
Query: 200 ACSIAAKKHIDQSTTILDVQGVGLKNFNKAARDLVQRIQKIDGDNYPETLNRMFIVNAGS 259
C I K Q L+ + R +V +Q D++P + ++
Sbjct: 198 -CIIENFKGFTMQ------QAASLRTSD--LRKMVDMLQ----DSFPARFKAIHFIHQPW 244
Query: 260 GFRLLWNTVKSFLDPKTTAKIHVLGNKYQSKLLEIIDANELPDFLGGTCTCADKGGCMRS 319
F +N VK FL K ++ V G+ S + ID N LP GGT D
Sbjct: 245 YFTTTYNVVKPFLKSKLLERVFVHGDDL-SGFYQEIDENILPSDFGGTLPKYDGKAVAEQ 303
Query: 320 DKGP 323
GP
Sbjct: 304 LFGP 307
>pdb|3HX3|A Chain A, Crystal Structure Of Cralbp Mutant R234w
Length = 316
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 62/264 (23%), Positives = 105/264 (39%), Gaps = 32/264 (12%)
Query: 69 EEMQAVDAFRQALVLDELLPAKHDDHHMMLRFLKARKFDIEKTKQMWGDMLQWRKEFGAD 128
E +QA A + L + + D LRF++ARKF++ + ++ + +R ++
Sbjct: 67 EXVQAQAASGEELAVAVAERVQEKDSGFFLRFIRARKFNVGRAYELLRGYVNFRLQYP-- 124
Query: 129 TIMEDFEFKEIDEVLKYYPQGHHGV----DKDGQPVYI----EWLGQ-VDSNKLMQVTTM 179
E F+ + V G+ GV DK G+ V + W Q + ++++Q
Sbjct: 125 ---ELFDSLSPEAVRCTIEAGYPGVLSSRDKYGRVVXLFNIENWQSQEITFDEILQAYC- 180
Query: 180 DRYLKYHVKEFERTFISKFPACSIAAKKHIDQSTTILDVQGVGLKNFNKAARDLVQRIQK 239
++ + E E T I+ F C I K Q L+ DL + +
Sbjct: 181 --FILEKLLENEETQINGF--CIIENFKGFTXQ------QAASLRT-----SDLRKXVDX 225
Query: 240 IDGDNYPETLNRMFIVNAGSGFRLLWNTVKSFLDPKTTAKIHVLGNKYQSKLLEIIDANE 299
+ D++P + ++ F +N VK FL K ++ V G+ S + ID N
Sbjct: 226 LQ-DSFPAWFKAIHFIHQPWYFTTTYNVVKPFLKSKLLERVFVHGDDL-SGFYQEIDENI 283
Query: 300 LPDFLGGTCTCADKGGCMRSDKGP 323
LP GGT D GP
Sbjct: 284 LPSDFGGTLPKYDGKAVAEQLFGP 307
>pdb|1WG6|A Chain A, Solution Structure Of Pdz Domain In Protein Xp_110852
Length = 127
Score = 32.7 bits (73), Expect = 0.52, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Query: 4 PLDRHNKAGLEKSDHENSEDERKTRLGSLKKKAINASTKFRHSLTKRGRRNSKVMSVSIE 63
PL+ AGL S N E T LG K I+ F+ R R N ++++V+ E
Sbjct: 30 PLNDSGSAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDG---RLRMNDQLIAVNGE 86
Query: 64 DCLNAEEMQAVDAFRQALVLD 84
L +A++ R+++ ++
Sbjct: 87 TLLGKSNHEAMETLRRSMSME 107
>pdb|1U2E|A Chain A, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|B Chain B, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|C Chain C, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|D Chain D, Crystal Structure Of The C-C Bond Hydrolase Mhpc
Length = 289
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 49/108 (45%), Gaps = 10/108 (9%)
Query: 181 RYLKYHVKEFERTFISKFPACSIAAKKHIDQSTTILDVQG---VGLKNFNKAARDLVQRI 237
R+L +V+E +T F C D++ +L G G NF++ LV+
Sbjct: 14 RFL--NVEEAGKTLRIHFNDCGQG-----DETVVLLHGSGPGATGWANFSRNIDPLVEAG 66
Query: 238 QKIDGDNYPETLNRMFIVNAGSGFRLLWNTVKSFLDPKTTAKIHVLGN 285
++ + P +VN+GS L +KS +D AKIH+LGN
Sbjct: 67 YRVILLDCPGWGKSDSVVNSGSRSDLNARILKSVVDQLDIAKIHLLGN 114
>pdb|2K1Z|A Chain A, Solution Structure Of Par-3 Pdz3
pdb|2K20|A Chain A, Solution Structure Of Par-3 Pdz3 In Complex With Pten
Peptide
Length = 104
Score = 30.0 bits (66), Expect = 3.6, Method: Composition-based stats.
Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
Query: 4 PLDRHNKAGLEKSDHENSEDERKTRLGSLKKKAINASTKFRHSLTKRGRRNSKVMSVSIE 63
PL+ AGL S N E LG K IN S R R N ++++V+ E
Sbjct: 11 PLNDSGSAGLGVSVKGNRSKENHADLGIFVKSIINGGAA---SKDGRLRVNDQLIAVNGE 67
Query: 64 DCLNAEEMQAVDAFRQAL 81
L +A++ R+++
Sbjct: 68 SLLGKANQEAMETLRRSM 85
>pdb|2KOH|A Chain A, Nmr Structure Of Mouse Par3-Pdz3 In Complex With
Ve-Cadherin C-Terminus
Length = 111
Score = 30.0 bits (66), Expect = 3.6, Method: Composition-based stats.
Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
Query: 4 PLDRHNKAGLEKSDHENSEDERKTRLGSLKKKAINASTKFRHSLTKRGRRNSKVMSVSIE 63
PL+ AGL S N E LG K IN S R R N ++++V+ E
Sbjct: 14 PLNDSGSAGLGVSVKGNRSKENHADLGIFVKSIINGGAA---SKDGRLRVNDQLIAVNGE 70
Query: 64 DCLNAEEMQAVDAFRQAL 81
L +A++ R+++
Sbjct: 71 SLLGKANQEAMETLRRSM 88
>pdb|2AHD|A Chain A, The Apo Structure Of Methanococcus Jannaschii
Phosphodiesterase Mj0936
pdb|2AHD|B Chain B, The Apo Structure Of Methanococcus Jannaschii
Phosphodiesterase Mj0936
pdb|2AHD|C Chain C, The Apo Structure Of Methanococcus Jannaschii
Phosphodiesterase Mj0936
pdb|2AHD|D Chain D, The Apo Structure Of Methanococcus Jannaschii
Phosphodiesterase Mj0936
Length = 165
Score = 29.6 bits (65), Expect = 4.8, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 120 QWRKEFGADTIMEDFEFKEIDEVLKYYPQGHH 151
+W K+ + I++DF EID++ + GHH
Sbjct: 69 EWLKDINEENIIDDFISVEIDDLKFFITHGHH 100
>pdb|1S3L|A Chain A, Structural And Functional Characterization Of A Novel
Archaeal Phosphodiesterase
pdb|1S3L|B Chain B, Structural And Functional Characterization Of A Novel
Archaeal Phosphodiesterase
pdb|1S3M|A Chain A, Structural And Functional Characterization Of A Novel
Archaeal Phosphodiesterase
pdb|1S3M|B Chain B, Structural And Functional Characterization Of A Novel
Archaeal Phosphodiesterase
pdb|1S3N|A Chain A, Structural And Functional Characterization Of A Novel
Archaeal Phosphodiesterase
pdb|1S3N|B Chain B, Structural And Functional Characterization Of A Novel
Archaeal Phosphodiesterase
Length = 190
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 120 QWRKEFGADTIMEDFEFKEIDEVLKYYPQGHH 151
+W K+ + I++DF EID++ + GHH
Sbjct: 94 EWLKDINEENIIDDFISVEIDDLKFFITHGHH 125
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.131 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,180,378
Number of Sequences: 62578
Number of extensions: 670750
Number of successful extensions: 1773
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 1741
Number of HSP's gapped (non-prelim): 37
length of query: 563
length of database: 14,973,337
effective HSP length: 104
effective length of query: 459
effective length of database: 8,465,225
effective search space: 3885538275
effective search space used: 3885538275
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)