Query 008520
Match_columns 563
No_of_seqs 328 out of 1552
Neff 6.2
Searched_HMMs 46136
Date Thu Mar 28 13:11:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008520.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008520hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1471 Phosphatidylinositol t 100.0 2.6E-45 5.7E-50 380.8 23.0 276 57-335 7-287 (317)
2 KOG1470 Phosphatidylinositol t 100.0 6.7E-38 1.5E-42 320.8 17.9 234 72-338 27-261 (324)
3 PF00650 CRAL_TRIO: CRAL/TRIO 100.0 7.4E-30 1.6E-34 237.2 7.9 156 142-307 3-159 (159)
4 smart00516 SEC14 Domain in hom 100.0 1.1E-27 2.3E-32 222.5 15.0 154 142-309 5-158 (158)
5 cd00170 SEC14 Sec14p-like lipi 99.9 1.6E-24 3.4E-29 198.3 14.2 144 151-307 14-157 (157)
6 PF13716 CRAL_TRIO_2: Divergen 99.4 2E-13 4.2E-18 126.8 3.4 138 151-310 7-146 (149)
7 PF03765 CRAL_TRIO_N: CRAL/TRI 98.6 3.9E-08 8.4E-13 76.7 4.9 47 71-118 1-55 (55)
8 KOG4406 CDC42 Rho GTPase-activ 97.9 5.2E-05 1.1E-09 80.6 9.4 127 153-300 89-215 (467)
9 COG4064 MtrG Tetrahydromethano 88.6 0.61 1.3E-05 38.1 3.8 25 473-497 10-34 (75)
10 PRK01026 tetrahydromethanopter 82.7 1.6 3.5E-05 36.5 3.6 25 474-498 11-35 (77)
11 TIGR01149 mtrG N5-methyltetrah 81.9 1.8 3.8E-05 35.5 3.5 24 475-498 9-32 (70)
12 PF04210 MtrG: Tetrahydrometha 76.8 2.9 6.2E-05 34.3 3.2 23 475-497 9-31 (70)
13 PF14555 UBA_4: UBA-like domai 65.9 21 0.00045 26.3 5.5 36 72-116 2-37 (43)
14 PF10805 DUF2730: Protein of u 49.6 1.4E+02 0.003 26.5 8.9 17 423-439 9-25 (106)
15 KOG1962 B-cell receptor-associ 48.1 91 0.002 31.4 8.2 74 478-551 114-192 (216)
16 PHA01750 hypothetical protein 42.9 99 0.0022 25.3 6.1 42 510-553 30-71 (75)
17 PF02845 CUE: CUE domain; Int 42.5 62 0.0014 23.5 4.7 38 72-117 3-40 (42)
18 TIGR02132 phaR_Bmeg polyhydrox 40.4 86 0.0019 30.6 6.4 73 476-549 70-153 (189)
19 TIGR03185 DNA_S_dndD DNA sulfu 40.0 1.1E+02 0.0023 35.6 8.6 63 477-541 390-452 (650)
20 COG1340 Uncharacterized archae 39.7 1.8E+02 0.0038 30.7 9.1 64 480-552 109-172 (294)
21 PF05377 FlaC_arch: Flagella a 38.1 79 0.0017 25.0 4.8 35 518-552 1-35 (55)
22 TIGR03752 conj_TIGR03752 integ 37.7 1.4E+02 0.0031 33.4 8.5 74 475-548 56-136 (472)
23 smart00546 CUE Domain that may 36.9 76 0.0016 23.1 4.4 38 72-117 4-41 (43)
24 PF12718 Tropomyosin_1: Tropom 34.2 85 0.0019 29.4 5.4 68 477-544 34-107 (143)
25 KOG1838 Alpha/beta hydrolase [ 33.8 2.9E+02 0.0063 30.5 10.0 90 154-268 121-216 (409)
26 KOG3313 Molecular chaperone Pr 33.7 2.5E+02 0.0053 27.5 8.3 63 491-553 21-86 (187)
27 PF05276 SH3BP5: SH3 domain-bi 33.3 2.5E+02 0.0054 28.7 8.9 56 481-538 94-149 (239)
28 PF05529 Bap31: B-cell recepto 31.5 1.3E+02 0.0028 29.2 6.4 64 478-542 118-185 (192)
29 PF11802 CENP-K: Centromere-as 30.8 2.9E+02 0.0064 28.7 8.9 40 476-515 50-89 (268)
30 PF10368 YkyA: Putative cell-w 30.7 1.6E+02 0.0036 29.2 7.0 76 477-552 31-110 (204)
31 PF10212 TTKRSYEDQ: Predicted 30.7 2.6E+02 0.0056 31.8 9.2 55 479-544 442-510 (518)
32 PF13080 DUF3926: Protein of u 30.6 51 0.0011 24.5 2.5 23 527-552 13-35 (44)
33 PHA00687 hypothetical protein 30.5 1E+02 0.0023 23.4 4.2 30 502-531 9-48 (56)
34 PF08317 Spc7: Spc7 kinetochor 30.3 2.2E+02 0.0047 30.2 8.4 72 479-551 178-250 (325)
35 KOG0249 LAR-interacting protei 30.0 2.7E+02 0.0059 32.9 9.2 75 476-550 171-249 (916)
36 COG1579 Zn-ribbon protein, pos 29.2 2.6E+02 0.0056 28.7 8.2 80 479-562 97-204 (239)
37 KOG0612 Rho-associated, coiled 29.2 1.7E+02 0.0036 36.5 7.8 48 479-534 442-492 (1317)
38 TIGR02132 phaR_Bmeg polyhydrox 28.0 2.1E+02 0.0046 28.0 6.9 15 486-500 115-129 (189)
39 PF03961 DUF342: Protein of un 27.4 2.7E+02 0.0059 30.8 8.8 56 478-533 341-398 (451)
40 PF14712 Snapin_Pallidin: Snap 26.9 1.3E+02 0.0028 25.5 4.9 33 520-552 10-42 (92)
41 PF01496 V_ATPase_I: V-type AT 26.9 2.1E+02 0.0046 33.9 8.3 63 488-550 204-270 (759)
42 PF05276 SH3BP5: SH3 domain-bi 26.1 2.3E+02 0.005 29.0 7.3 74 479-552 143-226 (239)
43 PRK14136 recX recombination re 26.0 40 0.00087 35.6 1.8 24 94-117 278-301 (309)
44 PF10158 LOH1CR12: Tumour supp 25.6 2E+02 0.0044 26.6 6.2 60 479-539 50-109 (131)
45 PF05335 DUF745: Protein of un 25.6 1.1E+02 0.0024 30.2 4.7 31 506-536 140-177 (188)
46 PHA02562 46 endonuclease subun 25.5 1.6E+02 0.0034 33.1 6.7 75 477-552 298-372 (562)
47 PF04880 NUDE_C: NUDE protein, 25.4 86 0.0019 30.3 3.8 32 507-539 4-35 (166)
48 PF11221 Med21: Subunit 21 of 23.6 6E+02 0.013 23.6 9.4 59 483-550 78-137 (144)
49 PRK09261 phospho-2-dehydro-3-d 23.2 4E+02 0.0086 28.9 8.7 66 146-222 205-271 (349)
50 PRK13182 racA polar chromosome 22.9 1E+02 0.0023 29.9 3.9 70 477-554 91-165 (175)
51 PF13234 rRNA_proc-arch: rRNA- 22.8 2.2E+02 0.0048 29.0 6.6 70 480-552 182-263 (268)
52 KOG0861 SNARE protein YKT6, sy 22.2 95 0.0021 30.3 3.4 28 504-539 132-159 (198)
53 TIGR00034 aroFGH phospho-2-deh 21.7 1.4E+02 0.0031 32.1 5.0 68 145-223 199-266 (344)
54 PF05308 Mito_fiss_reg: Mitoch 20.7 1E+02 0.0022 31.8 3.5 18 514-531 119-136 (253)
55 PF09789 DUF2353: Uncharacteri 20.3 3.8E+02 0.0083 28.6 7.7 62 475-536 23-98 (319)
56 PRK10884 SH3 domain-containing 20.1 3.4E+02 0.0074 27.1 7.0 75 480-554 95-169 (206)
57 COG5104 PRP40 Splicing factor 20.1 2.7E+02 0.0058 31.1 6.6 33 505-537 323-355 (590)
No 1
>KOG1471 consensus Phosphatidylinositol transfer protein SEC14 and related proteins [Lipid transport and metabolism]
Probab=100.00 E-value=2.6e-45 Score=380.78 Aligned_cols=276 Identities=47% Similarity=0.754 Sum_probs=247.2
Q ss_pred ccccccccCC--CHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCCccccc
Q 008520 57 VMSVSIEDCL--NAEEMQAVDAFRQALVLDELLPAKHDDHHMMLRFLKARKFDIEKTKQMWGDMLQWRKEFGADTIMEDF 134 (563)
Q Consensus 57 ~~s~~ied~~--d~eE~~aV~elR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~k~l~~~l~WRk~~~~D~I~~d~ 134 (563)
++.+..+++. ++.+.+.++++| |+..+++++...+|+.+|+|||||++||+++|+++|.+++.||+.++.|.|+.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~i~~lr-~~~~~~~l~~~~~~d~~LlRfLra~~f~ve~a~~~l~~~l~~r~~~~~d~i~~~- 84 (317)
T KOG1471|consen 7 LAKVAKEELNEITESEEAVIAQLR-WLLQKPHLPNKYDDDFNLLRFLRARKFDVEKAKQMLKRYLNWRKRNKLDEIFED- 84 (317)
T ss_pred cccccccccCCCcHHHHHHHHHHH-HHhhccCCCCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhCCccHhhc-
Confidence 3444454444 466678888888 888889998756666899999999999999999999999999999999999876
Q ss_pred chhHHHHHHhhcCCCCCcCCCCCCcEEEEEcCccCcchhhhcCCHHHHHHHHHHHHHHHHhhhchhhhHhhcCCCCCEEE
Q 008520 135 EFKEIDEVLKYYPQGHHGVDKDGQPVYIEWLGQVDSNKLMQVTTMDRYLKYHVKEFERTFISKFPACSIAAKKHIDQSTT 214 (563)
Q Consensus 135 ~~~el~ev~k~yp~g~~G~Dk~GRPV~i~rlg~~d~~~l~~~~~~d~~lk~~v~~lE~~l~~~~pacs~~~~~~i~~~tv 214 (563)
+....+..+++|++++|+|++|+||++.+.|..+...++..+...+++++++..+|+.+..+++.|.....+++.|+++
T Consensus 85 -~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~e~~~~~~~~~~~g~~~ 163 (317)
T KOG1471|consen 85 -FEEDDELLKYYPQGLHGVDKEGRPVYIERLGKIDPKGLLKRTGSLDYLKYHFKEFEKVFKLVLELELKTGERQISGIVT 163 (317)
T ss_pred -cccchhhhhhccccccccCCCCCEEEEeccCCCCcccceeeccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceeEE
Confidence 2344445668999999999999999999999999999999999999999999999999999999988877788999999
Q ss_pred EEeCCCCCCCCccHHHHHHHHHHHHHhccccccccceEEEEecChHHHHHHHHHhhcCCccccceEEEeCCcchHHHHcc
Q 008520 215 ILDVQGVGLKNFNKAARDLVQRIQKIDGDNYPETLNRMFIVNAGSGFRLLWNTVKSFLDPKTTAKIHVLGNKYQSKLLEI 294 (563)
Q Consensus 215 IIDl~Gvsl~~~~k~~~~llk~i~kilqd~YPErL~~I~IINaP~~f~~lW~iVK~FLd~kT~~KI~~l~~~~~~~L~e~ 294 (563)
|+|++|+++.++.+..+.+++.++.++|+|||++++++||||+|++|+++|++|||||+++|++||+++++++.+.|+++
T Consensus 164 I~Dl~G~~~~~~~~~~~~~~~~~~~~~q~~yPe~l~~~~iIN~P~~f~~~~~~ikpfL~~kt~~ki~~~~~~~~~~L~k~ 243 (317)
T KOG1471|consen 164 IFDLKGVSLSHLLKPAPTLLKKILKILQDNYPERLKRIHIINAPTIFSALWKVVKPFLDEKTRKKIHVLHSKDKESLLKY 243 (317)
T ss_pred EEECCCCcchhHHHHHHHHHHHHHHHHHHhCHHhhceEEEEcCchhHHHHHHHHhccCCHHHHhhheecCCCchhhhhhh
Confidence 99999999999998899999999999999999999999999999999999999999999999999997777788999999
Q ss_pred CCCCCCCccCCCCCCCCC---CCCCccCCCCCCCChHHHHHhhc
Q 008520 295 IDANELPDFLGGTCTCAD---KGGCMRSDKGPWNDPEIMKMVQN 335 (563)
Q Consensus 295 Id~s~LP~elGGt~~~~~---~ggc~~sd~gpw~~pe~l~~~~~ 335 (563)
|+++.||.+|||++.+.+ .++|..++.++|.++++.+....
T Consensus 244 i~~~~LP~~yGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (317)
T KOG1471|consen 244 IPPEVLPEEYGGTCGDLDDPNGGGCDLSDEGPWKEPEIKKGKQE 287 (317)
T ss_pred CCHhhCccccCCCccccccccCCcCccccccccccccccccccc
Confidence 999999999999999974 46699999999999877554443
No 2
>KOG1470 consensus Phosphatidylinositol transfer protein PDR16 and related proteins [Lipid transport and metabolism]
Probab=100.00 E-value=6.7e-38 Score=320.79 Aligned_cols=234 Identities=27% Similarity=0.444 Sum_probs=188.0
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCC-cccccchhHHHHHHhhcCCCC
Q 008520 72 QAVDAFRQALVLDELLPAKHDDHHMMLRFLKARKFDIEKTKQMWGDMLQWRKEFGADT-IMEDFEFKEIDEVLKYYPQGH 150 (563)
Q Consensus 72 ~aV~elR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~k~l~~~l~WRk~~~~D~-I~~d~~~~el~ev~k~yp~g~ 150 (563)
+.+.+++..+......-...+.+.+++|||||||||+++|.+|+.++|.||+.+++.. +..+. +..-.+.++.| .
T Consensus 27 ~k~~~~~~~~~pl~~~~~~~~~d~cllRfLrAr~wnv~kA~kml~~tL~WR~~~~~~~~~~~~E-v~~e~~tGK~y---i 102 (324)
T KOG1470|consen 27 DKINSVKKLLGPLTEKESKWCSDACLLRFLRARKWNVKKASKMLSNTLKWRRSFGPEEVIEADE-VAAELETGKAY---I 102 (324)
T ss_pred HHHHHHHHhhcchhhhhHhcCcHHHHHHHHHHcCCcHHHHHHHHHHHhHHHHhcCCccccCHHH-HHHHhhcCcEE---E
Confidence 4566666665321111123344489999999999999999999999999999999987 43221 22222345555 5
Q ss_pred CcCCCCCCcEEEEEcCccCcchhhhcCCHHHHHHHHHHHHHHHHhhhchhhhHhhcCCCCCEEEEEeCCCCCCCCccHHH
Q 008520 151 HGVDKDGQPVYIEWLGQVDSNKLMQVTTMDRYLKYHVKEFERTFISKFPACSIAAKKHIDQSTTILDVQGVGLKNFNKAA 230 (563)
Q Consensus 151 ~G~Dk~GRPV~i~rlg~~d~~~l~~~~~~d~~lk~~v~~lE~~l~~~~pacs~~~~~~i~~~tvIIDl~Gvsl~~~~k~~ 230 (563)
.|.|++||||+|+++....++. .+.+++.++.||+||.++..+ ++.++++++++|++|+|++|.+
T Consensus 103 ~G~D~~gRPVl~~~~~~~~qn~----~t~~~~~r~~Vy~mE~Ai~~l--------p~~qe~~~~L~D~~~fs~sN~d--- 167 (324)
T KOG1470|consen 103 LGHDKDGRPVLYLRPRPHRQNT----KTQKELERLLVYTLENAILFL--------PPGQEQFVWLFDLTGFSMSNPD--- 167 (324)
T ss_pred ecccCCCCeEEEEecCCCCCCC----CCHHHHHHHHHHHHHHHHHhC--------CCCcceEEEEEecccCcccCCC---
Confidence 6789999999999777655544 588999999999999998753 3567889999999999999887
Q ss_pred HHHHHHHHHHhccccccccceEEEEecChHHHHHHHHHhhcCCccccceEEEeCCcchHHHHccCCCCCCCccCCCCCCC
Q 008520 231 RDLVQRIQKIDGDNYPETLNRMFIVNAGSGFRLLWNTVKSFLDPKTTAKIHVLGNKYQSKLLEIIDANELPDFLGGTCTC 310 (563)
Q Consensus 231 ~~llk~i~kilqd~YPErL~~I~IINaP~~f~~lW~iVK~FLd~kT~~KI~~l~~~~~~~L~e~Id~s~LP~elGGt~~~ 310 (563)
....+.+++++|+||||||+..+|+|+||+|..+|+++|+||||+|++||.|..+. ..|.++||+++||..|||+...
T Consensus 168 ~~~~k~~~~~lq~hYPErLg~a~l~~~P~iF~~~wkiikpflDp~t~~Kv~F~~~~--~~l~~~~d~~~l~s~~GG~~~~ 245 (324)
T KOG1470|consen 168 IKFLKELLHILQDHYPERLGKALLVNAPWIFQPFWKIIKPFLDPKTASKVKFVEPK--DDLSEYFDESQLPSLFGGKLLF 245 (324)
T ss_pred cHHHHHHHHHHHHhChHHhhhhhhcCChHHHHHHHHHhhhccChhhhceeEEecCh--hHHHhhCCccccchhhCCCccc
Confidence 78899999999999999999999999999999999999999999999999999874 5599999999999999996655
Q ss_pred CCCCCCccCCCCCCCChHHHHHhhcccc
Q 008520 311 ADKGGCMRSDKGPWNDPEIMKMVQNGYA 338 (563)
Q Consensus 311 ~~~ggc~~sd~gpw~~pe~l~~~~~g~~ 338 (563)
-++.|++...+...+.
T Consensus 246 ------------~y~~e~~~~~~~~~~~ 261 (324)
T KOG1470|consen 246 ------------EYTHEEYWPQMKEDDS 261 (324)
T ss_pred ------------ccCCcchhhhhhhhHH
Confidence 3555556556655554
No 3
>PF00650 CRAL_TRIO: CRAL/TRIO domain; InterPro: IPR001251 This entry defines the C-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle. Cellular retinaldehyde-binding protein (CRALBP) carries 11-cis-retinol or 11-cis-retinaldehyde as endogenous ligands and may function as a substrate carrier protein that modulates interaction of these retinoids with visual cycle enzymes []. The multidomain protein Trio binds the LAR transmembrane tyrosine phosphatase, contains a protein kinase domain, and has separate rac-specific and rho-specific guanine nucleotide exchange factor domains []. Trio is a multifunctional protein that integrates and amplifies signals involved in coordinating actin remodeling, which is necessary for cell migration and growth. Other members of the family are transfer proteins that include, guanine nucleotide exchange factor that may function as an effector of RAC1, phosphatidylinositol/phosphatidylcholine transfer protein that is required for the transport of secretory proteins from the golgi complex and alpha-tocopherol transfer protein that enhances the transfer of the ligand between separate membranes.; PDB: 1OIZ_A 1R5L_A 1OIP_A 3HX3_A 3HY5_A 1OLM_E 1O6U_E 3Q8G_A 3B7Q_B 3B7Z_A ....
Probab=99.96 E-value=7.4e-30 Score=237.21 Aligned_cols=156 Identities=36% Similarity=0.578 Sum_probs=129.2
Q ss_pred HHhhcCCCCCcCCCCCCcEEEEEcCccCcchhhhcCCHHHHHHHHHHHHHHHHhhhchhhhHhhcCCCCCEEEEEeCCCC
Q 008520 142 VLKYYPQGHHGVDKDGQPVYIEWLGQVDSNKLMQVTTMDRYLKYHVKEFERTFISKFPACSIAAKKHIDQSTTILDVQGV 221 (563)
Q Consensus 142 v~k~yp~g~~G~Dk~GRPV~i~rlg~~d~~~l~~~~~~d~~lk~~v~~lE~~l~~~~pacs~~~~~~i~~~tvIIDl~Gv 221 (563)
..+.++.+++|+|++||||+|+++|++|+.. .+.+++++++++.+|.+++...+ +.++.|+++|+|++|+
T Consensus 3 ~~~~~~~~~~g~D~~gr~v~~~~~~~~~~~~----~~~~~~~~~~~~~~E~~~~~~~~------~~~~~~~~~iiD~~g~ 72 (159)
T PF00650_consen 3 ILKSGPFYLHGRDKDGRPVIYIRLGRFDPKK----FSPEDVIRFFVYLLERMLKRMPE------GGQVEGIVVIIDLSGF 72 (159)
T ss_dssp HHTTSCEEEEEE-TTS-EEEEEEGTT--HHT----S-HHHHHHHHHHHHHHHHHTHHH------TSHHH-EEEEEE-TT-
T ss_pred HHCCeeEEECCCCCCcCEEEEEEcccCCCCc----CCHHHHHHHHHHHHHHHHhhhcc------cccceeEEEEEeCCCc
Confidence 5677888899999999999999999999885 57889999999999998864211 3568999999999999
Q ss_pred CCCCccHHHHHHHHHHHHHhccccccccceEEEEecChHHHHHHHHHhhcCCccccceEEEeCC-cchHHHHccCCCCCC
Q 008520 222 GLKNFNKAARDLVQRIQKIDGDNYPETLNRMFIVNAGSGFRLLWNTVKSFLDPKTTAKIHVLGN-KYQSKLLEIIDANEL 300 (563)
Q Consensus 222 sl~~~~k~~~~llk~i~kilqd~YPErL~~I~IINaP~~f~~lW~iVK~FLd~kT~~KI~~l~~-~~~~~L~e~Id~s~L 300 (563)
+++++.....+.++.+++++|++||++++++||||+|++|+++|+++++||+++|++||+++++ ++.+.|.++||+++|
T Consensus 73 ~~~~~~~~~~~~~k~~~~~~~~~yP~rl~~i~iin~p~~~~~~~~~~~~~l~~~~~~ki~~~~~~~~~~~l~~~i~~~~l 152 (159)
T PF00650_consen 73 SLSNFDWWPISFLKKIIQLLQDHYPERLGKIYIINAPWFFRVLWKIVKPFLSPKTREKIVFHSGSDWKAKLKEYIDPEQL 152 (159)
T ss_dssp -HHHHHCHHHHHHHHHHHHHHHHSTTTEEEEEEES--TTHHHHHHHHGGGS-HHHHCTEEEECTTCHCHHHCCCSTGGGS
T ss_pred eEeccccchhhhhhhhhhhhcccCCccceeEEEEecChhhhhhHhHHHhhcCHhhheeEEEECCcccHHHHHhhCCHhHC
Confidence 9998875458899999999999999999999999999999999999999999999999999965 555799999999999
Q ss_pred CccCCCC
Q 008520 301 PDFLGGT 307 (563)
Q Consensus 301 P~elGGt 307 (563)
|.+|||+
T Consensus 153 P~~~GG~ 159 (159)
T PF00650_consen 153 PVEYGGT 159 (159)
T ss_dssp BGGGTSS
T ss_pred chhcCCC
Confidence 9999997
No 4
>smart00516 SEC14 Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p). Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p) and in RhoGAPs, RhoGEFs and the RasGAP, neurofibromin (NF1). Lipid-binding domain. The SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.
Probab=99.95 E-value=1.1e-27 Score=222.51 Aligned_cols=154 Identities=38% Similarity=0.649 Sum_probs=139.5
Q ss_pred HHhhcCCCCCcCCCCCCcEEEEEcCccCcchhhhcCCHHHHHHHHHHHHHHHHhhhchhhhHhhcCCCCCEEEEEeCCCC
Q 008520 142 VLKYYPQGHHGVDKDGQPVYIEWLGQVDSNKLMQVTTMDRYLKYHVKEFERTFISKFPACSIAAKKHIDQSTTILDVQGV 221 (563)
Q Consensus 142 v~k~yp~g~~G~Dk~GRPV~i~rlg~~d~~~l~~~~~~d~~lk~~v~~lE~~l~~~~pacs~~~~~~i~~~tvIIDl~Gv 221 (563)
...++++|+ |+|++||||+|++++++++.. .+.+++++++++.+|.++... ....++.++++|+|++|+
T Consensus 5 ~~~~~~~~~-g~D~~GrpV~~~~~~~~~~~~----~~~~~~~~~~~~~~e~~~~~~------~~~~~~~~~~~i~D~~~~ 73 (158)
T smart00516 5 GKAYIPGGR-GYDKDGRPVLIFRAGRFDLKS----VTLEELLRYLVYVLEKILQRE------KKTGGIEGFTVIFDLKGL 73 (158)
T ss_pred HHHhcCCCC-CCCCCcCEEEEEeccccccCc----CCHHHHHHHHHHHHHHHHHHH------hcCCCeeeEEEEEECCCC
Confidence 456778777 999999999999999998765 689999999999999987641 134678999999999999
Q ss_pred CCCCccHHHHHHHHHHHHHhccccccccceEEEEecChHHHHHHHHHhhcCCccccceEEEeCCcchHHHHccCCCCCCC
Q 008520 222 GLKNFNKAARDLVQRIQKIDGDNYPETLNRMFIVNAGSGFRLLWNTVKSFLDPKTTAKIHVLGNKYQSKLLEIIDANELP 301 (563)
Q Consensus 222 sl~~~~k~~~~llk~i~kilqd~YPErL~~I~IINaP~~f~~lW~iVK~FLd~kT~~KI~~l~~~~~~~L~e~Id~s~LP 301 (563)
+++++. .+.++.+.++++++||++++++||||+|++|+++|+++++|+++++++||+++++++.+.|.++||+++||
T Consensus 74 ~~~~~~---~~~lk~~~~~~~~~yp~~l~~i~ivn~p~~~~~~~~~~~~~l~~~~~~ki~~~~~~~~~~L~~~i~~~~lP 150 (158)
T smart00516 74 SMSNPD---LSVLRKILKILQDHYPERLGKVLIINPPWFFRVLWKIIKPFLDEKTREKIRFVGNDSKEELLEYIDPEQLP 150 (158)
T ss_pred Cccccc---HHHHHHHHHHHHHHhHHHhCeEEEECCCHHHHHHHHHHHhhcChhhhccEEEeCCCCHHHHHhhCCHhhCc
Confidence 999865 68899999999999999999999999999999999999999999999999999987779999999999999
Q ss_pred ccCCCCCC
Q 008520 302 DFLGGTCT 309 (563)
Q Consensus 302 ~elGGt~~ 309 (563)
.+|||++.
T Consensus 151 ~~~GG~~~ 158 (158)
T smart00516 151 EELGGTLD 158 (158)
T ss_pred HhhCCCCC
Confidence 99999974
No 5
>cd00170 SEC14 Sec14p-like lipid-binding domain. Found in secretory proteins, such as S. cerevisiae phosphatidylinositol transfer protein (Sec14p), and in lipid regulated proteins such as RhoGAPs, RhoGEFs and neurofibromin (NF1). SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.
Probab=99.92 E-value=1.6e-24 Score=198.26 Aligned_cols=144 Identities=36% Similarity=0.611 Sum_probs=128.1
Q ss_pred CcCCCCCCcEEEEEcCccCcchhhhcCCHHHHHHHHHHHHHHHHhhhchhhhHhhcCCCCCEEEEEeCCCCCCCCccHHH
Q 008520 151 HGVDKDGQPVYIEWLGQVDSNKLMQVTTMDRYLKYHVKEFERTFISKFPACSIAAKKHIDQSTTILDVQGVGLKNFNKAA 230 (563)
Q Consensus 151 ~G~Dk~GRPV~i~rlg~~d~~~l~~~~~~d~~lk~~v~~lE~~l~~~~pacs~~~~~~i~~~tvIIDl~Gvsl~~~~k~~ 230 (563)
.|.|++||||++++++..++... .+.+++++++++.+|..+.... ....++++|+|++|+++.++. ..
T Consensus 14 ~~~D~~gr~V~~~~~~~~~~~~~---~~~~~~~~~~~~~~e~~~~~~~--------~~~~~~~~i~D~~~~~~~~~~-~~ 81 (157)
T cd00170 14 GGRDKEGRPVLIIRAGNKDLSKS---LDSEELLRYLVYTLEKLLQEDD--------EQVEGFVVIIDLKGLSLSHLL-PD 81 (157)
T ss_pred CCCCCCcCEEEEEecCCcchhhc---CCHHHHHHHHHHHHHHHHhhhh--------hcccceEEEEECCCCChhccc-hh
Confidence 34699999999999997666543 3458999999999999886532 223799999999999999886 56
Q ss_pred HHHHHHHHHHhccccccccceEEEEecChHHHHHHHHHhhcCCccccceEEEeCCcchHHHHccCCCCCCCccCCCC
Q 008520 231 RDLVQRIQKIDGDNYPETLNRMFIVNAGSGFRLLWNTVKSFLDPKTTAKIHVLGNKYQSKLLEIIDANELPDFLGGT 307 (563)
Q Consensus 231 ~~llk~i~kilqd~YPErL~~I~IINaP~~f~~lW~iVK~FLd~kT~~KI~~l~~~~~~~L~e~Id~s~LP~elGGt 307 (563)
.+.++.++++++++||++++++||||+|++|+.+|+++++|+++++++||++++++ .+.|.++||+++||.+|||+
T Consensus 82 ~~~~k~~~~~~~~~yp~~l~~v~ivn~p~~~~~~~~~~~~~l~~~~~~ki~~~~~~-~~~L~~~i~~~~Lp~~~GG~ 157 (157)
T cd00170 82 PSLLKKILKILQDNYPERLKAVYIINPPWFFKVLWKIVKPFLSEKTRKKIVFLGSD-KEELLKYIDKEQLPEEYGGT 157 (157)
T ss_pred HHHHHHHHHHHHHhChHhhCeEEEECCCHhHHHHHHHHHHhcCHhhhhhEEEecCC-HHHHHhhCChhhCcHhhCCC
Confidence 78999999999999999999999999999999999999999999999999999876 69999999999999999996
No 6
>PF13716 CRAL_TRIO_2: Divergent CRAL/TRIO domain; PDB: 2D4Q_B 3PG7_B 2E2X_B 3P7Z_B 3PEG_A.
Probab=99.38 E-value=2e-13 Score=126.82 Aligned_cols=138 Identities=19% Similarity=0.353 Sum_probs=93.5
Q ss_pred CcCCCCCCcEEEEEcCccCcchhhhcCCHHHHHHHHHHHHHHHHhhhchhhhHhhcCCCCCEEEEEeCCCCCCCCccHHH
Q 008520 151 HGVDKDGQPVYIEWLGQVDSNKLMQVTTMDRYLKYHVKEFERTFISKFPACSIAAKKHIDQSTTILDVQGVGLKNFNKAA 230 (563)
Q Consensus 151 ~G~Dk~GRPV~i~rlg~~d~~~l~~~~~~d~~lk~~v~~lE~~l~~~~pacs~~~~~~i~~~tvIIDl~Gvsl~~~~k~~ 230 (563)
.|+|++||||+++..... +.. .+.+.++.|++..+...+ ...++++|+|++|.+..+.. .
T Consensus 7 gG~d~~g~pV~~~~~~~~-~~~----~~~~~ll~yl~~~l~~~~-------------~~~~f~vVid~~~~~~~~~~--~ 66 (149)
T PF13716_consen 7 GGRDREGRPVVVFIASRL-PSS----DDLERLLLYLLSTLSEEV-------------VDKPFSVVIDHTGFSRSSEP--S 66 (149)
T ss_dssp EEEBTTS-EEEEEEGGG--C-T----THHHHHHHHHHHHH-TTT-------------TTS-EEEEEE-TT--GGG-----
T ss_pred cccCCCcCEEEEEECCcC-cch----hhHHHHHHHHHHhhhHHh-------------cCCCEEEEEEcCCCccccCC--c
Confidence 479999999999997776 332 356666666665552111 13469999999999875432 3
Q ss_pred HHHHHHHHHHhccccccccceEEEEecChHHHHHH-HHHhhcCCccc-cceEEEeCCcchHHHHccCCCCCCCccCCCCC
Q 008520 231 RDLVQRIQKIDGDNYPETLNRMFIVNAGSGFRLLW-NTVKSFLDPKT-TAKIHVLGNKYQSKLLEIIDANELPDFLGGTC 308 (563)
Q Consensus 231 ~~llk~i~kilqd~YPErL~~I~IINaP~~f~~lW-~iVK~FLd~kT-~~KI~~l~~~~~~~L~e~Id~s~LP~elGGt~ 308 (563)
...++.+.+.+...|+..|+++||||++++++.++ .+.+++.+.+. ..||.++.+ .++|.++||+++||..+||+.
T Consensus 67 ~~~l~~~~~~l~~~~~~nl~~vyiv~p~~~~k~~~~~~~~~~~~~~~~~~kv~~~~s--l~~L~~~i~~~qL~~~lp~~~ 144 (149)
T PF13716_consen 67 LSWLKQLYKLLPRKYKKNLKKVYIVHPNWFLKKILATLLRPFVSSKFWKKKVVYVSS--LSELSKHIDPSQLPESLPGVL 144 (149)
T ss_dssp HHHHHHTTTSS-HHHHHTEEEEEEES--HHHHHHHHHTTTTGGGGTT--TTEEEESS--TCGGGGTSGGGG------HHH
T ss_pred hHHHHHHHHHHHHHHhhceEEEEEECCCHHHHHHHHHHhcccccccccceEEEEECC--HHHHHhhCCHHHhcccCCCEE
Confidence 67899999999999999999999999999999999 55567778988 899999966 589999999999999999987
Q ss_pred CC
Q 008520 309 TC 310 (563)
Q Consensus 309 ~~ 310 (563)
..
T Consensus 145 ~~ 146 (149)
T PF13716_consen 145 QY 146 (149)
T ss_dssp --
T ss_pred ec
Confidence 65
No 7
>PF03765 CRAL_TRIO_N: CRAL/TRIO, N-terminal domain; InterPro: IPR008273 This entry defines the N-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle. Cellular retinaldehyde-binding protein (CRALBP) carries 11-cis-retinol or 11-cis-retinaldehyde as endogenous ligands and may function as a substrate carrier protein that modulates interaction of these retinoids with visual cycle enzymes []. The multidomain protein Trio binds the LAR transmembrane tyrosine phosphatase, contains a protein kinase domain, and has separate rac-specific and rho-specific guanine nucleotide exchange factor domains []. Trio is a multifunctional protein that integrates and amplifies signals involved in coordinating actin remodeling, which is necessary for cell migration and growth. Other members of the family are transfer proteins that include, guanine nucleotide exchange factor that may function as an effector of RAC1, phosphatidylinositol/phosphatidylcholine transfer protein that is required for the transport of secretory proteins from the golgi complex and alpha-tocopherol transfer protein that enhances the transfer of the ligand between separate membranes.; PDB: 1OIZ_A 1R5L_A 1OIP_A 3HX3_A 3HY5_A 1AUA_A 3Q8G_A 3B7Q_B 3B7Z_A 3B7N_A ....
Probab=98.64 E-value=3.9e-08 Score=76.71 Aligned_cols=47 Identities=38% Similarity=0.562 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHhC--------CCCCCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Q 008520 71 MQAVDAFRQALVLD--------ELLPAKHDDHHMMLRFLKARKFDIEKTKQMWGDM 118 (563)
Q Consensus 71 ~~aV~elR~~L~~~--------~~Lp~~~dD~~~LLRFLrArkfDvekA~k~l~~~ 118 (563)
+++|++|++.|... +.....++| .+|+||||||+||+++|.+||.++
T Consensus 1 k~~l~~l~~~l~~~~~~~~~~~~~~~~~~~d-~~llRFLRARkf~v~~A~~mL~~t 55 (55)
T PF03765_consen 1 KQKLKQLREHLSELDEKAPGLWDDEKEDHDD-NFLLRFLRARKFDVEKAFKMLKKT 55 (55)
T ss_dssp HHHHHHHHHHHHH--GGGTHHHTTHTSS-SH-HHHHHHHHHTTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhccchhcccccccCCCCH-HHHHHHHHHccCCHHHHHHHHHhC
Confidence 47899999999973 234455666 799999999999999999999875
No 8
>KOG4406 consensus CDC42 Rho GTPase-activating protein [Signal transduction mechanisms; Cytoskeleton]
Probab=97.88 E-value=5.2e-05 Score=80.61 Aligned_cols=127 Identities=22% Similarity=0.296 Sum_probs=96.3
Q ss_pred CCCCCCcEEEEEcCccCcchhhhcCCHHHHHHHHHHHHHHHHhhhchhhhHhhcCCCCCEEEEEeCCCCCCCCccHHHHH
Q 008520 153 VDKDGQPVYIEWLGQVDSNKLMQVTTMDRYLKYHVKEFERTFISKFPACSIAAKKHIDQSTTILDVQGVGLKNFNKAARD 232 (563)
Q Consensus 153 ~Dk~GRPV~i~rlg~~d~~~l~~~~~~d~~lk~~v~~lE~~l~~~~pacs~~~~~~i~~~tvIIDl~Gvsl~~~~k~~~~ 232 (563)
.|+.||.|+++..-++.+..- ..--++++|.++.+++.++. + .+.+.=-.|+...+.. .+.
T Consensus 89 ~D~~gr~iivv~a~rlp~~~e---ld~~~li~~~v~~id~~Ve~-------------D-Yt~vYfh~gl~s~nkp--~l~ 149 (467)
T KOG4406|consen 89 KDKQGRKIIVVYACRLPSSSE---LDDIRLISYLVYTIDKYVEN-------------D-YTLVYFHHGLPSDNKP--YLQ 149 (467)
T ss_pred ccccCCeeEEEEEecCCchhh---hhhHHHHHHHHHHHHHHHhc-------------c-ceeeehhcCCcccccc--hHH
Confidence 699999999998877665541 12223899999999988753 1 5555556666665543 355
Q ss_pred HHHHHHHHhccccccccceEEEEecChHHHHHHHHHhhcCCccccceEEEeCCcchHHHHccCCCCCC
Q 008520 233 LVQRIQKIDGDNYPETLNRMFIVNAGSGFRLLWNTVKSFLDPKTTAKIHVLGNKYQSKLLEIIDANEL 300 (563)
Q Consensus 233 llk~i~kilqd~YPErL~~I~IINaP~~f~~lW~iVK~FLd~kT~~KI~~l~~~~~~~L~e~Id~s~L 300 (563)
++....+-+-.+|=--++.+|+|.+-|+.+++|+++|||++.|..+||+-+ ++.++|.++|.-+.|
T Consensus 150 ~l~~aYke~Dr~~~KNlKalYvvHptwfikvi~n~~kplIS~KF~rKi~Y~--n~lseL~~~l~l~rL 215 (467)
T KOG4406|consen 150 LLFDAYKELDRNFKKNLKALYVVHPTWFIKVIWNLFKPLISLKFTRKIIYF--NSLSELFEALKLNRL 215 (467)
T ss_pred HHHHHHHHHHHHHhhhhhheEEecHHHHHHHHHHHHhhhcchhhhceeEEe--ehHHHHHHhhhhhhh
Confidence 555555555567888999999999999999999999999999999999888 457899888764443
No 9
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=88.61 E-value=0.61 Score=38.10 Aligned_cols=25 Identities=28% Similarity=0.567 Sum_probs=22.1
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHHh
Q 008520 473 PSISGADYMAMAKRMAELEDKVKML 497 (563)
Q Consensus 473 ~~~~~~~~~~~~~r~~~lE~kv~~L 497 (563)
-.++.|+|..+.+||.++|+||+.-
T Consensus 10 v~v~~~dfne~~kRLdeieekvef~ 34 (75)
T COG4064 10 VVVDPDDFNEIHKRLDEIEEKVEFV 34 (75)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHhh
Confidence 3389999999999999999999754
No 10
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=82.67 E-value=1.6 Score=36.49 Aligned_cols=25 Identities=28% Similarity=0.574 Sum_probs=22.1
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHhc
Q 008520 474 SISGADYMAMAKRMAELEDKVKMLT 498 (563)
Q Consensus 474 ~~~~~~~~~~~~r~~~lE~kv~~L~ 498 (563)
.++.++|..+++||.++|+||+.-+
T Consensus 11 iv~~~d~~~i~~rLD~iEeKVEftn 35 (77)
T PRK01026 11 VVDPKDFKEIQKRLDEIEEKVEFTN 35 (77)
T ss_pred ecCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3899999999999999999998643
No 11
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=81.93 E-value=1.8 Score=35.49 Aligned_cols=24 Identities=25% Similarity=0.594 Sum_probs=21.5
Q ss_pred cchhhHHHHHHHHHHHHHHHHHhc
Q 008520 475 ISGADYMAMAKRMAELEDKVKMLT 498 (563)
Q Consensus 475 ~~~~~~~~~~~r~~~lE~kv~~L~ 498 (563)
++.++|..+++||.++|+||+.-+
T Consensus 9 v~~~d~~~i~~rLd~iEeKVEf~~ 32 (70)
T TIGR01149 9 VEPDEFNEVMKRLDEIEEKVEFVN 32 (70)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHH
Confidence 788999999999999999998643
No 12
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=76.84 E-value=2.9 Score=34.35 Aligned_cols=23 Identities=30% Similarity=0.614 Sum_probs=21.1
Q ss_pred cchhhHHHHHHHHHHHHHHHHHh
Q 008520 475 ISGADYMAMAKRMAELEDKVKML 497 (563)
Q Consensus 475 ~~~~~~~~~~~r~~~lE~kv~~L 497 (563)
++.++|..+++||.++|+||+.-
T Consensus 9 v~~~~~~~i~~rLd~iEeKvEf~ 31 (70)
T PF04210_consen 9 VDPDDFNEIMKRLDEIEEKVEFT 31 (70)
T ss_pred eCHHHHHHHHHHHHHHHHHHHhH
Confidence 78999999999999999999754
No 13
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A.
Probab=65.94 E-value=21 Score=26.27 Aligned_cols=36 Identities=17% Similarity=0.370 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Q 008520 72 QAVDAFRQALVLDELLPAKHDDHHMMLRFLKARKFDIEKTKQMWG 116 (563)
Q Consensus 72 ~aV~elR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~k~l~ 116 (563)
+.|.+|..... . +...-..||.+.+||++.|+..+-
T Consensus 2 e~i~~F~~iTg--------~-~~~~A~~~L~~~~wdle~Av~~y~ 37 (43)
T PF14555_consen 2 EKIAQFMSITG--------A-DEDVAIQYLEANNWDLEAAVNAYF 37 (43)
T ss_dssp HHHHHHHHHH---------S-SHHHHHHHHHHTTT-HHHHHHHHH
T ss_pred HHHHHHHHHHC--------c-CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 56788887653 1 236889999999999999988764
No 14
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=49.60 E-value=1.4e+02 Score=26.50 Aligned_cols=17 Identities=12% Similarity=0.028 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 008520 423 FGGVLAFVMGIVTMVRM 439 (563)
Q Consensus 423 ~~~~~~~~~~~~~~~~~ 439 (563)
|.++.+++..+++++..
T Consensus 9 w~ii~a~~~~~~~~~~~ 25 (106)
T PF10805_consen 9 WGIIWAVFGIAGGIFWL 25 (106)
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 45566666666666653
No 15
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=48.07 E-value=91 Score=31.38 Aligned_cols=74 Identities=19% Similarity=0.175 Sum_probs=51.3
Q ss_pred hhHHHHHHHHHHHHHH-----HHHhcCCCCCCCchHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhh
Q 008520 478 ADYMAMAKRMAELEDK-----VKMLTMKPSTMPPEKEEMLNAAVNRVSTLEQELSATKKALENSLARQEELVAYIEKKK 551 (563)
Q Consensus 478 ~~~~~~~~r~~~lE~k-----v~~L~~KP~~mP~EKEe~L~aa~~Rv~~~e~~l~~tkkaL~~al~kQ~El~ayie~~~ 551 (563)
+.++..+.+|..+++- -+....|+.+=+-.+|+=........+.||.||+++++.|+.+-.+=.+|--+.|...
T Consensus 114 ~R~~~ll~~l~~l~~~~~~~~~~~~lk~~~~~~~~~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~ 192 (216)
T KOG1962|consen 114 RRLHTLLRELATLRANEKAMKENEALKKQLENSSKLEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQ 192 (216)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhcccchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 4566778888888871 2333333343444456667777888999999999999999977666666666666544
No 16
>PHA01750 hypothetical protein
Probab=42.92 E-value=99 Score=25.33 Aligned_cols=42 Identities=31% Similarity=0.438 Sum_probs=32.8
Q ss_pred HHHHHHHHhHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhh
Q 008520 510 EMLNAAVNRVSTLEQELSATKKALENSLARQEELVAYIEKKKTK 553 (563)
Q Consensus 510 e~L~aa~~Rv~~~e~~l~~tkkaL~~al~kQ~El~ayie~~~~~ 553 (563)
.+|.+|+.-| +-+||.--++-++++-.||.+|-+-++..|+|
T Consensus 30 q~lkdAvkeI--V~~ELdNL~~ei~~~kikqDnl~~qv~eik~k 71 (75)
T PHA01750 30 QALKDAVKEI--VNSELDNLKTEIEELKIKQDELSRQVEEIKRK 71 (75)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 5677777644 56788888888888889999998888776654
No 17
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=42.50 E-value=62 Score=23.47 Aligned_cols=38 Identities=18% Similarity=0.297 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Q 008520 72 QAVDAFRQALVLDELLPAKHDDHHMMLRFLKARKFDIEKTKQMWGD 117 (563)
Q Consensus 72 ~aV~elR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~k~l~~ 117 (563)
+.|+.|++. .|. .+. ..+..-|.++++|++.|..++.+
T Consensus 3 ~~v~~L~~m------FP~-~~~-~~I~~~L~~~~~~ve~ai~~LL~ 40 (42)
T PF02845_consen 3 EMVQQLQEM------FPD-LDR-EVIEAVLQANNGDVEAAIDALLE 40 (42)
T ss_dssp HHHHHHHHH------SSS-S-H-HHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHHHHHH------CCC-CCH-HHHHHHHHHcCCCHHHHHHHHHc
Confidence 445566554 343 233 58999999999999999998764
No 18
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=40.36 E-value=86 Score=30.60 Aligned_cols=73 Identities=23% Similarity=0.373 Sum_probs=42.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHh-----------cCCCCCCCchHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhHHHHH
Q 008520 476 SGADYMAMAKRMAELEDKVKML-----------TMKPSTMPPEKEEMLNAAVNRVSTLEQELSATKKALENSLARQEELV 544 (563)
Q Consensus 476 ~~~~~~~~~~r~~~lE~kv~~L-----------~~KP~~mP~EKEe~L~aa~~Rv~~~e~~l~~tkkaL~~al~kQ~El~ 544 (563)
+.+++..+-.|+-.||+||+.| ...--.=|.+|++ ++.-=.||.+||.-+.+-=.+|+-----|.||-
T Consensus 70 Sr~DiarvA~lvinlE~kvD~lee~fdd~~d~l~~q~eq~~~~~~~-v~~~~q~~~~l~~K~D~~L~llE~~~~~~~~~~ 148 (189)
T TIGR02132 70 TKEDIANVASLVINLEEKVDLIEEFFDDKFDELEAQQEQAPALKKD-VTKLKQDIKSLDKKLDKILELLEGQQKTQDELK 148 (189)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHhH-HHHHHHHHHHHHHHHHHHHHHHhcCccchhHHH
Confidence 4556666666666666665544 3222245667766 355567888888777766666663333344444
Q ss_pred HHHHh
Q 008520 545 AYIEK 549 (563)
Q Consensus 545 ayie~ 549 (563)
+.|.+
T Consensus 149 ~~~~~ 153 (189)
T TIGR02132 149 ETIQK 153 (189)
T ss_pred HHHHH
Confidence 44443
No 19
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=39.99 E-value=1.1e+02 Score=35.63 Aligned_cols=63 Identities=24% Similarity=0.346 Sum_probs=41.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhHH
Q 008520 477 GADYMAMAKRMAELEDKVKMLTMKPSTMPPEKEEMLNAAVNRVSTLEQELSATKKALENSLARQE 541 (563)
Q Consensus 477 ~~~~~~~~~r~~~lE~kv~~L~~KP~~mP~EKEe~L~aa~~Rv~~~e~~l~~tkkaL~~al~kQ~ 541 (563)
...+..+.+++.+||+..+.|..|=...|.+ +-+..-..+.+.++.++.+.+..+.....+-+
T Consensus 390 ~~~~~~~~~~~~~~e~el~~l~~~l~~~~~~--e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~ 452 (650)
T TIGR03185 390 QDAKSQLLKELRELEEELAEVDKKISTIPSE--EQIAQLLEELGEAQNELFRSEAEIEELLRQLE 452 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888999999999999999998888864 24444455555555555555544444333333
No 20
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=39.69 E-value=1.8e+02 Score=30.74 Aligned_cols=64 Identities=33% Similarity=0.473 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhh
Q 008520 480 YMAMAKRMAELEDKVKMLTMKPSTMPPEKEEMLNAAVNRVSTLEQELSATKKALENSLARQEELVAYIEKKKT 552 (563)
Q Consensus 480 ~~~~~~r~~~lE~kv~~L~~KP~~mP~EKEe~L~aa~~Rv~~~e~~l~~tkkaL~~al~kQ~El~ayie~~~~ 552 (563)
+.+.=+.+.+||.+..+. ..||++|.=| |.+|.-|+.+|...+|++....--| ||.|-|+..+.
T Consensus 109 ~~~ler~i~~Le~~~~T~-----~L~~e~E~~l---vq~I~~L~k~le~~~k~~e~~~~~~-el~aei~~lk~ 172 (294)
T COG1340 109 IKSLEREIERLEKKQQTS-----VLTPEEEREL---VQKIKELRKELEDAKKALEENEKLK-ELKAEIDELKK 172 (294)
T ss_pred HHHHHHHHHHHHHHHHhc-----CCChHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 667778899999998874 4788888766 6677789999999999999988775 55666666654
No 21
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=38.12 E-value=79 Score=25.03 Aligned_cols=35 Identities=26% Similarity=0.415 Sum_probs=15.7
Q ss_pred hHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhh
Q 008520 518 RVSTLEQELSATKKALENSLARQEELVAYIEKKKT 552 (563)
Q Consensus 518 Rv~~~e~~l~~tkkaL~~al~kQ~El~ayie~~~~ 552 (563)
||+.||.+|.+.+-.+...=.-.++|-+.||+.++
T Consensus 1 Ri~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~e 35 (55)
T PF05377_consen 1 RIDELENELPRIESSINTVKKENEEISESVEKIEE 35 (55)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555544444433333333444455554443
No 22
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=37.70 E-value=1.4e+02 Score=33.42 Aligned_cols=74 Identities=15% Similarity=0.276 Sum_probs=51.3
Q ss_pred cchhhHHHHHHHHHHHHHHHHHhcCCCCCCCchHHHHHH--HHH-----HhHHhHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 008520 475 ISGADYMAMAKRMAELEDKVKMLTMKPSTMPPEKEEMLN--AAV-----NRVSTLEQELSATKKALENSLARQEELVAYI 547 (563)
Q Consensus 475 ~~~~~~~~~~~r~~~lE~kv~~L~~KP~~mP~EKEe~L~--aa~-----~Rv~~~e~~l~~tkkaL~~al~kQ~El~ayi 547 (563)
+..|.+..++-++.+|+.++..|...-...=.|.|+|-+ .++ .+|++-..||......|.+...+...++.-+
T Consensus 56 TP~DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l 135 (472)
T TIGR03752 56 TPADTLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQL 135 (472)
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778899999999999999999998776666667676643 111 2344555667767777766666555555555
Q ss_pred H
Q 008520 548 E 548 (563)
Q Consensus 548 e 548 (563)
.
T Consensus 136 ~ 136 (472)
T TIGR03752 136 Q 136 (472)
T ss_pred H
Confidence 3
No 23
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=36.87 E-value=76 Score=23.07 Aligned_cols=38 Identities=18% Similarity=0.318 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Q 008520 72 QAVDAFRQALVLDELLPAKHDDHHMMLRFLKARKFDIEKTKQMWGD 117 (563)
Q Consensus 72 ~aV~elR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~k~l~~ 117 (563)
+.+++|++. +|. .+. ..+.+.|+++++|++.|...|.+
T Consensus 4 ~~v~~L~~m------FP~-l~~-~~I~~~L~~~~g~ve~~i~~LL~ 41 (43)
T smart00546 4 EALHDLKDM------FPN-LDE-EVIKAVLEANNGNVEATINNLLE 41 (43)
T ss_pred HHHHHHHHH------CCC-CCH-HHHHHHHHHcCCCHHHHHHHHHc
Confidence 455666554 454 333 58899999999999999988753
No 24
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=34.19 E-value=85 Score=29.37 Aligned_cols=68 Identities=21% Similarity=0.283 Sum_probs=46.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCCCCCC---CchHHHHHH---HHHHhHHhHHHHHHHHHHHHHHHHHhHHHHH
Q 008520 477 GADYMAMAKRMAELEDKVKMLTMKPSTM---PPEKEEMLN---AAVNRVSTLEQELSATKKALENSLARQEELV 544 (563)
Q Consensus 477 ~~~~~~~~~r~~~lE~kv~~L~~KP~~m---P~EKEe~L~---aa~~Rv~~~e~~l~~tkkaL~~al~kQ~El~ 544 (563)
..++.++-+|++.||..|..+..+=.+. ..+.+.... +.-+||..||.+|..+-+.|.+|..|=.+.-
T Consensus 34 E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d 107 (143)
T PF12718_consen 34 EQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKKLKETTEKLREAD 107 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888887777776553322 223333221 3567899999999999999999987755543
No 25
>KOG1838 consensus Alpha/beta hydrolase [General function prediction only]
Probab=33.75 E-value=2.9e+02 Score=30.55 Aligned_cols=90 Identities=18% Similarity=0.320 Sum_probs=64.8
Q ss_pred CCCCCcEEEEEcCccCcchhhhcCCHHHHHHHHHHHHHHHHhhhchhhhHhhcCCCCCEEEEEeCCCCCCCCccH-----
Q 008520 154 DKDGQPVYIEWLGQVDSNKLMQVTTMDRYLKYHVKEFERTFISKFPACSIAAKKHIDQSTTILDVQGVGLKNFNK----- 228 (563)
Q Consensus 154 Dk~GRPV~i~rlg~~d~~~l~~~~~~d~~lk~~v~~lE~~l~~~~pacs~~~~~~i~~~tvIIDl~Gvsl~~~~k----- 228 (563)
|....|++++-+|... .+.+.|++.++....+ ..--++|++-.|++=..+..
T Consensus 121 ~~~~~P~vvilpGltg-------~S~~~YVr~lv~~a~~----------------~G~r~VVfN~RG~~g~~LtTpr~f~ 177 (409)
T KOG1838|consen 121 DDGTDPIVVILPGLTG-------GSHESYVRHLVHEAQR----------------KGYRVVVFNHRGLGGSKLTTPRLFT 177 (409)
T ss_pred CCCCCcEEEEecCCCC-------CChhHHHHHHHHHHHh----------------CCcEEEEECCCCCCCCccCCCceee
Confidence 3456799999999743 4667899998765432 12347788888865444321
Q ss_pred -HHHHHHHHHHHHhccccccccceEEEEecChHHHHHHHHH
Q 008520 229 -AARDLVQRIQKIDGDNYPETLNRMFIVNAGSGFRLLWNTV 268 (563)
Q Consensus 229 -~~~~llk~i~kilqd~YPErL~~I~IINaP~~f~~lW~iV 268 (563)
....-++.+++.+...||.+ +++.+--+.+-.++||-+
T Consensus 178 ag~t~Dl~~~v~~i~~~~P~a--~l~avG~S~Gg~iL~nYL 216 (409)
T KOG1838|consen 178 AGWTEDLREVVNHIKKRYPQA--PLFAVGFSMGGNILTNYL 216 (409)
T ss_pred cCCHHHHHHHHHHHHHhCCCC--ceEEEEecchHHHHHHHh
Confidence 12356788888889999998 899999998888888765
No 26
>KOG3313 consensus Molecular chaperone Prefoldin, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=33.73 E-value=2.5e+02 Score=27.51 Aligned_cols=63 Identities=21% Similarity=0.247 Sum_probs=55.1
Q ss_pred HHHHHHhcCCCCCCCchHHHHHHHHHHhHHhHHHHHHHHHHHHHH---HHHhHHHHHHHHHhhhhh
Q 008520 491 EDKVKMLTMKPSTMPPEKEEMLNAAVNRVSTLEQELSATKKALEN---SLARQEELVAYIEKKKTK 553 (563)
Q Consensus 491 E~kv~~L~~KP~~mP~EKEe~L~aa~~Rv~~~e~~l~~tkkaL~~---al~kQ~El~ayie~~~~~ 553 (563)
=|-|+...+||.--+.++..+++....--+-+|.-|.++++.|.+ .+.+=.||+.++.+++.+
T Consensus 21 iedV~s~~~qp~~~~~~~l~~~~E~~~kYkfme~~l~a~~~~l~~kIPd~entLeiv~~l~~~~~~ 86 (187)
T KOG3313|consen 21 IEDVESYISQPELESLEALKKLQERYGKYKFMEASLLAQKRRLKTKIPDIENTLEIVQTLIAKKDE 86 (187)
T ss_pred HHHHHHHHcCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhCccc
Confidence 355778889999999999999999999999999999999999986 466778899998887654
No 27
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=33.30 E-value=2.5e+02 Score=28.73 Aligned_cols=56 Identities=25% Similarity=0.239 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHH
Q 008520 481 MAMAKRMAELEDKVKMLTMKPSTMPPEKEEMLNAAVNRVSTLEQELSATKKALENSLA 538 (563)
Q Consensus 481 ~~~~~r~~~lE~kv~~L~~KP~~mP~EKEe~L~aa~~Rv~~~e~~l~~tkkaL~~al~ 538 (563)
..-=..++-+|+.+..-+. ..+=+..-||||.|+.||..-|++-......-.....
T Consensus 94 ~aAKe~v~laEq~l~~~~~--~~~D~~wqEmLn~A~~kVneAE~ek~~ae~eH~~~~~ 149 (239)
T PF05276_consen 94 AAAKEMVALAEQSLMSDSN--WTFDPAWQEMLNHATQKVNEAEQEKTRAEREHQRRAR 149 (239)
T ss_pred HHHHHHHHHHHHHHhcCCc--ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334567778888776444 5688999999999999999999888877766554433
No 28
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=31.51 E-value=1.3e+02 Score=29.22 Aligned_cols=64 Identities=22% Similarity=0.408 Sum_probs=37.9
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCCCCCchHHHHH----HHHHHhHHhHHHHHHHHHHHHHHHHHhHHH
Q 008520 478 ADYMAMAKRMAELEDKVKMLTMKPSTMPPEKEEML----NAAVNRVSTLEQELSATKKALENSLARQEE 542 (563)
Q Consensus 478 ~~~~~~~~r~~~lE~kv~~L~~KP~~mP~EKEe~L----~aa~~Rv~~~e~~l~~tkkaL~~al~kQ~E 542 (563)
..+..+++++..+|+++..+..+...--..+++.+ ...-.-|+.|+.||.++++-+ ++|-+|-|
T Consensus 118 ~r~~~li~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~lk~el~~~~~~~-~~LkkQ~~ 185 (192)
T PF05529_consen 118 RRVHSLIKELIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIEKLKKELEKKEKEI-EALKKQSE 185 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 34668889999999999998887655544444332 222334555555555533332 35555543
No 29
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=30.79 E-value=2.9e+02 Score=28.71 Aligned_cols=40 Identities=18% Similarity=0.210 Sum_probs=34.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHH
Q 008520 476 SGADYMAMAKRMAELEDKVKMLTMKPSTMPPEKEEMLNAA 515 (563)
Q Consensus 476 ~~~~~~~~~~r~~~lE~kv~~L~~KP~~mP~EKEe~L~aa 515 (563)
+...++-.|-|+..|+..++..+.+-+++.+.++++|-+.
T Consensus 50 s~~ql~ll~~~~k~L~aE~~qwqk~~peii~~n~~VL~~l 89 (268)
T PF11802_consen 50 SDAQLSLLMMRVKCLTAELEQWQKRTPEIIPLNPEVLLTL 89 (268)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHhcCCCcCCCCHHHHHHH
Confidence 3456778889999999999999999999999998887644
No 30
>PF10368 YkyA: Putative cell-wall binding lipoprotein; InterPro: IPR019454 The YkyA family of proteins contain a lipoprotein signal and a hydrolase domain. They are similar to cell wall binding proteins and might also be recognisable by a host immune defence system. It is thus likely that they function in pathways important for pathogenicity []. ; PDB: 2AP3_A.
Probab=30.72 E-value=1.6e+02 Score=29.16 Aligned_cols=76 Identities=24% Similarity=0.319 Sum_probs=54.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCCCCCCC----chHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhh
Q 008520 477 GADYMAMAKRMAELEDKVKMLTMKPSTMP----PEKEEMLNAAVNRVSTLEQELSATKKALENSLARQEELVAYIEKKKT 552 (563)
Q Consensus 477 ~~~~~~~~~r~~~lE~kv~~L~~KP~~mP----~EKEe~L~aa~~Rv~~~e~~l~~tkkaL~~al~kQ~El~ayie~~~~ 552 (563)
+..+....+-|.+||++...|-.+=-+.. .+=......|+.-|+.=|..|.+-|+||.++--....+-.||++-+.
T Consensus 31 Ek~~~~~~k~L~~lE~~~q~lY~~ii~~~~~d~~~v~~~~~~a~~nv~~R~k~l~~Ek~ai~~a~~e~~~~~~~i~ki~d 110 (204)
T PF10368_consen 31 EKPFKEQQKKLNELEKKEQELYEQIIQLGKDDNDEVKKLSDEALKNVDEREKELKKEKEAIEKAKEEFKKAKKYIDKIED 110 (204)
T ss_dssp THHHHHHHHHHHHHHHHHHTTTTGG---G-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34688889999999999999988863332 34467788999999999999999999999999888888898887664
No 31
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=30.66 E-value=2.6e+02 Score=31.76 Aligned_cols=55 Identities=31% Similarity=0.472 Sum_probs=37.9
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhHHhHHHHHHHHHH--------------HHHHHHHhHHHHH
Q 008520 479 DYMAMAKRMAELEDKVKMLTMKPSTMPPEKEEMLNAAVNRVSTLEQELSATKK--------------ALENSLARQEELV 544 (563)
Q Consensus 479 ~~~~~~~r~~~lE~kv~~L~~KP~~mP~EKEe~L~aa~~Rv~~~e~~l~~tkk--------------aL~~al~kQ~El~ 544 (563)
+...+.+||...|+.-.. .++=|+.+-.+|..||.||..|++ .|.+.|++|.|=.
T Consensus 442 Ec~aL~~rL~~aE~ek~~-----------l~eeL~~a~~~i~~LqDEL~TTr~NYE~QLs~MSEHLasmNeqL~~Q~eeI 510 (518)
T PF10212_consen 442 ECRALQKRLESAEKEKES-----------LEEELKEANQNISRLQDELETTRRNYEEQLSMMSEHLASMNEQLAKQREEI 510 (518)
T ss_pred HHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666555554433 345588999999999999999998 4566666666543
No 32
>PF13080 DUF3926: Protein of unknown function (DUF3926)
Probab=30.60 E-value=51 Score=24.55 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhhhh
Q 008520 527 SATKKALENSLARQEELVAYIEKKKT 552 (563)
Q Consensus 527 ~~tkkaL~~al~kQ~El~ayie~~~~ 552 (563)
+.+|++|. +-||||.+|...++.
T Consensus 13 QsAkqmln---ILQEELssy~~E~~~ 35 (44)
T PF13080_consen 13 QSAKQMLN---ILQEELSSYPQEQPQ 35 (44)
T ss_pred HHHHHHHH---HHHHHHHhchhhccC
Confidence 46788876 679999999977664
No 33
>PHA00687 hypothetical protein
Probab=30.53 E-value=1e+02 Score=23.35 Aligned_cols=30 Identities=33% Similarity=0.619 Sum_probs=22.1
Q ss_pred CCCCchHHHHHHHH----------HHhHHhHHHHHHHHHH
Q 008520 502 STMPPEKEEMLNAA----------VNRVSTLEQELSATKK 531 (563)
Q Consensus 502 ~~mP~EKEe~L~aa----------~~Rv~~~e~~l~~tkk 531 (563)
...|||--.+|+.| +.||+++|.--+..|+
T Consensus 9 ttlppeamrllqqaaqtpitradplarvkaiekatervkr 48 (56)
T PHA00687 9 TTLPPEAMRLLQQAAQTPITRADPLARVKAIEKATERVKR 48 (56)
T ss_pred ccCCHHHHHHHHHHhcCCccccChHHHHHHHHHHHHHHHH
Confidence 35789988888876 5788888876555543
No 34
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=30.32 E-value=2.2e+02 Score=30.17 Aligned_cols=72 Identities=26% Similarity=0.289 Sum_probs=43.4
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCCCCC-chHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhh
Q 008520 479 DYMAMAKRMAELEDKVKMLTMKPSTMP-PEKEEMLNAAVNRVSTLEQELSATKKALENSLARQEELVAYIEKKK 551 (563)
Q Consensus 479 ~~~~~~~r~~~lE~kv~~L~~KP~~mP-~EKEe~L~aa~~Rv~~~e~~l~~tkkaL~~al~kQ~El~ayie~~~ 551 (563)
.+-.+..|.+.|++.+..|...+.++= +++ +-|+++=.++.+++.++.+-|+-|.+.=.+=.++-+-|+..+
T Consensus 178 ~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~-~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~ 250 (325)
T PF08317_consen 178 LLPKLRERKAELEEELENLKQLVEEIESCDQ-EELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELE 250 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhcCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777888888888888877655 333 345555566666666666555555544444444444444443
No 35
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=30.00 E-value=2.7e+02 Score=32.87 Aligned_cols=75 Identities=25% Similarity=0.209 Sum_probs=45.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHhcCCCCCCCchHHHH----HHHHHHhHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Q 008520 476 SGADYMAMAKRMAELEDKVKMLTMKPSTMPPEKEEM----LNAAVNRVSTLEQELSATKKALENSLARQEELVAYIEKK 550 (563)
Q Consensus 476 ~~~~~~~~~~r~~~lE~kv~~L~~KP~~mP~EKEe~----L~aa~~Rv~~~e~~l~~tkkaL~~al~kQ~El~ayie~~ 550 (563)
+.++...-++|.-..|++=.+=+..=+.--.|.+++ +++|+.++..|++||+.+||-|.++.---+-|...+|+.
T Consensus 171 ~~qe~naeL~rarqreemneeh~~rlsdtvdErlqlhlkermaAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~L 249 (916)
T KOG0249|consen 171 QLEELNAELQRARQREKMNEEHNKRLSDTVDERLQLHLKERMAALEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDL 249 (916)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 345566666666666554332211111111133322 578999999999999999999988765555555555544
No 36
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=29.19 E-value=2.6e+02 Score=28.66 Aligned_cols=80 Identities=23% Similarity=0.353 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhHHH----------------
Q 008520 479 DYMAMAKRMAELEDKVKMLTMKPSTMPPEKEEMLNAAVNRVSTLEQELSATKKALENSLARQEE---------------- 542 (563)
Q Consensus 479 ~~~~~~~r~~~lE~kv~~L~~KP~~mP~EKEe~L~aa~~Rv~~~e~~l~~tkkaL~~al~kQ~E---------------- 542 (563)
++...-+|...||..+..|...-. ++++-+-+...++..+|.++...+.++++++..=.|
T Consensus 97 E~~~ak~r~~~le~el~~l~~~~~----~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~~~~~~~~L~~~l 172 (239)
T COG1579 97 EIQIAKERINSLEDELAELMEEIE----KLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELSSKREELKEKL 172 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q ss_pred ---HHHHHHhhhhhc---------cccccccC
Q 008520 543 ---LVAYIEKKKTKK---------KLLQSSCS 562 (563)
Q Consensus 543 ---l~ayie~~~~~~---------~~~~~~~~ 562 (563)
|++..|+..+.+ .=.|++||
T Consensus 173 ~~ell~~yeri~~~~kg~gvvpl~g~~C~GC~ 204 (239)
T COG1579 173 DPELLSEYERIRKNKKGVGVVPLEGRVCGGCH 204 (239)
T ss_pred CHHHHHHHHHHHhcCCCceEEeecCCcccCCe
No 37
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=29.19 E-value=1.7e+02 Score=36.47 Aligned_cols=48 Identities=27% Similarity=0.429 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCCCCCchHHHH---HHHHHHhHHhHHHHHHHHHHHHH
Q 008520 479 DYMAMAKRMAELEDKVKMLTMKPSTMPPEKEEM---LNAAVNRVSTLEQELSATKKALE 534 (563)
Q Consensus 479 ~~~~~~~r~~~lE~kv~~L~~KP~~mP~EKEe~---L~aa~~Rv~~~e~~l~~tkkaL~ 534 (563)
....-++.++.|+++...++ |+|+| |+.++.+.+..|++|..+.+||.
T Consensus 442 ~l~~~~~~~~~~~~~~~~~~--------~~~~~~keL~e~i~~lk~~~~el~~~q~~l~ 492 (1317)
T KOG0612|consen 442 SLVNEMQEKEKLDEKCQAVA--------ELEEMDKELEETIEKLKSEESELQREQKALL 492 (1317)
T ss_pred chhhHHHHhhhHHHHHHHHh--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36677899999999999998 78887 89999999999999999777763
No 38
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=27.97 E-value=2.1e+02 Score=28.01 Aligned_cols=15 Identities=27% Similarity=0.454 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHhcCC
Q 008520 486 RMAELEDKVKMLTMK 500 (563)
Q Consensus 486 r~~~lE~kv~~L~~K 500 (563)
++..||+.+..|..|
T Consensus 115 ~v~~~~q~~~~l~~K 129 (189)
T TIGR02132 115 DVTKLKQDIKSLDKK 129 (189)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444455555555443
No 39
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=27.44 E-value=2.7e+02 Score=30.77 Aligned_cols=56 Identities=27% Similarity=0.469 Sum_probs=39.4
Q ss_pred hhHHHHHHHHHHHHHHHHHhcC--CCCCCCchHHHHHHHHHHhHHhHHHHHHHHHHHH
Q 008520 478 ADYMAMAKRMAELEDKVKMLTM--KPSTMPPEKEEMLNAAVNRVSTLEQELSATKKAL 533 (563)
Q Consensus 478 ~~~~~~~~r~~~lE~kv~~L~~--KP~~mP~EKEe~L~aa~~Rv~~~e~~l~~tkkaL 533 (563)
+++..+-++|.+|+..+..|.. ++..+|+++.++++........|.++|.+.+.-|
T Consensus 341 ~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~ 398 (451)
T PF03961_consen 341 EELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEEL 398 (451)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666667777777776665 4667899999998888877777777766555443
No 40
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=26.89 E-value=1.3e+02 Score=25.47 Aligned_cols=33 Identities=30% Similarity=0.396 Sum_probs=24.7
Q ss_pred HhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhh
Q 008520 520 STLEQELSATKKALENSLARQEELVAYIEKKKT 552 (563)
Q Consensus 520 ~~~e~~l~~tkkaL~~al~kQ~El~ayie~~~~ 552 (563)
..++-.|...+..|.++...|.+|.+.|++...
T Consensus 10 ~~l~P~l~~~~~~l~el~~sQ~~L~~~i~~~~~ 42 (92)
T PF14712_consen 10 SLLEPDLDRLDQQLQELRQSQEELLQQIDRLNE 42 (92)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346667777777888888888888888877654
No 41
>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the 116kDa subunit (or subunit a) and subunit I found in the V0 or A0 complex of V- or A-ATPases, respectively. The 116kDa subunit is a transmembrane glycoprotein required for the assembly and proton transport activity of the ATPase complex. Several isoforms of the 116kDa subunit exist, providing a potential role in the differential targeting and regulation of the V-ATPase for specific organelles []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 2RPW_X 2NVJ_A 2JTW_A 3RRK_A.
Probab=26.85 E-value=2.1e+02 Score=33.91 Aligned_cols=63 Identities=22% Similarity=0.380 Sum_probs=42.4
Q ss_pred HHHHHHHHHhcCCCCCCCch---HHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhH-HHHHHHHHhh
Q 008520 488 AELEDKVKMLTMKPSTMPPE---KEEMLNAAVNRVSTLEQELSATKKALENSLARQ-EELVAYIEKK 550 (563)
Q Consensus 488 ~~lE~kv~~L~~KP~~mP~E---KEe~L~aa~~Rv~~~e~~l~~tkkaL~~al~kQ-~El~ayie~~ 550 (563)
.++++-+..++-..-.+|.. -++++++--.|++.++++++.|++.|.+.+.+- ++|.++-+..
T Consensus 204 ~kv~~il~~~~f~~~~~p~~~~~p~e~~~~l~~~i~~l~~~~~~~~~~l~~~~~~~~~~l~~~~~~l 270 (759)
T PF01496_consen 204 EKVKKILRSFGFERYDLPEDEGTPEEAIKELEEEIEELEKELEELEEELKKLLEKYAEELEAWYEYL 270 (759)
T ss_dssp HHHHHHHHTTT--B----GGGGG-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccCceecCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777888888777764 468999999999999999999999999776553 3454444433
No 42
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=26.08 E-value=2.3e+02 Score=28.97 Aligned_cols=74 Identities=19% Similarity=0.306 Sum_probs=56.0
Q ss_pred hHHHHHHHHHHHHHHHHHhc---------CCCC-CCCchHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 008520 479 DYMAMAKRMAELEDKVKMLT---------MKPS-TMPPEKEEMLNAAVNRVSTLEQELSATKKALENSLARQEELVAYIE 548 (563)
Q Consensus 479 ~~~~~~~r~~~lE~kv~~L~---------~KP~-~mP~EKEe~L~aa~~Rv~~~e~~l~~tkkaL~~al~kQ~El~ayie 548 (563)
....++.+....|.+|..|. +||= +|=..=+++|++.-.||..||+++..+|.-=.+||-.=++|.+-|=
T Consensus 143 eH~~~~~~~~~ae~~v~~Lek~lkr~I~KSrPYfe~K~~~~~~l~~~k~~v~~Le~~v~~aK~~Y~~ALrnLE~ISeeIH 222 (239)
T PF05276_consen 143 EHQRRARIYNEAEQRVQQLEKKLKRAIKKSRPYFELKAKFNQQLEEQKEKVEELEAKVKQAKSRYSEALRNLEQISEEIH 222 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666655 3331 3444568899999999999999999999999999999999999886
Q ss_pred hhhh
Q 008520 549 KKKT 552 (563)
Q Consensus 549 ~~~~ 552 (563)
.+..
T Consensus 223 ~~R~ 226 (239)
T PF05276_consen 223 EQRR 226 (239)
T ss_pred HHHh
Confidence 5544
No 43
>PRK14136 recX recombination regulator RecX; Provisional
Probab=26.04 E-value=40 Score=35.62 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=19.6
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHH
Q 008520 94 HHMMLRFLKARKFDIEKTKQMWGD 117 (563)
Q Consensus 94 ~~~LLRFLrArkfDvekA~k~l~~ 117 (563)
..-+.|||..++|+.+...+.|..
T Consensus 278 k~K~iRfL~rRGFS~D~I~~vLk~ 301 (309)
T PRK14136 278 RAKQARFLAARGFSSATIVKLLKV 301 (309)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHh
Confidence 367899999999999987776653
No 44
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=25.64 E-value=2e+02 Score=26.64 Aligned_cols=60 Identities=22% Similarity=0.331 Sum_probs=46.0
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHh
Q 008520 479 DYMAMAKRMAELEDKVKMLTMKPSTMPPEKEEMLNAAVNRVSTLEQELSATKKALENSLAR 539 (563)
Q Consensus 479 ~~~~~~~r~~~lE~kv~~L~~KP~~mP~EKEe~L~aa~~Rv~~~e~~l~~tkkaL~~al~k 539 (563)
+-..+-+|+.+.|..+..+...-. -=..+=.-..+.+.+|+.|-..|.++...|++++.-
T Consensus 50 ~Q~~L~~riKevd~~~~~l~~~~~-erqk~~~k~ae~L~kv~els~~L~~~~~lL~~~v~~ 109 (131)
T PF10158_consen 50 DQNALAKRIKEVDQEIAKLLQQMV-ERQKRFAKFAEQLEKVNELSQQLSRCQSLLNQTVPS 109 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677899999998888876533 113444556788999999999999999999988654
No 45
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=25.60 E-value=1.1e+02 Score=30.16 Aligned_cols=31 Identities=42% Similarity=0.538 Sum_probs=24.0
Q ss_pred chHHHHHHHHHHhHHhHHHHH-------HHHHHHHHHH
Q 008520 506 PEKEEMLNAAVNRVSTLEQEL-------SATKKALENS 536 (563)
Q Consensus 506 ~EKEe~L~aa~~Rv~~~e~~l-------~~tkkaL~~a 536 (563)
.||-+||.+|=.||+.|...| ++||++-+-+
T Consensus 140 ~eK~qLLeaAk~Rve~L~~QL~~Ar~D~~~tk~aA~kA 177 (188)
T PF05335_consen 140 AEKTQLLEAAKRRVEELQRQLQAARADYEKTKKAAYKA 177 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 479999999999999998755 5566655543
No 46
>PHA02562 46 endonuclease subunit; Provisional
Probab=25.54 E-value=1.6e+02 Score=33.13 Aligned_cols=75 Identities=16% Similarity=0.277 Sum_probs=57.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhh
Q 008520 477 GADYMAMAKRMAELEDKVKMLTMKPSTMPPEKEEMLNAAVNRVSTLEQELSATKKALENSLARQEELVAYIEKKKT 552 (563)
Q Consensus 477 ~~~~~~~~~r~~~lE~kv~~L~~KP~~mP~EKEe~L~aa~~Rv~~~e~~l~~tkkaL~~al~kQ~El~ayie~~~~ 552 (563)
.+.++.+...+++|++++..|..+=.+.=...++ ++....|+..++.++...+..|++...+..+|-+=|++.+.
T Consensus 298 ~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~-~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~ 372 (562)
T PHA02562 298 PDRITKIKDKLKELQHSLEKLDTAIDELEEIMDE-FNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQA 372 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5678888888888888888888775544444444 77789999999999999999998877776776666666553
No 47
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=25.43 E-value=86 Score=30.31 Aligned_cols=32 Identities=38% Similarity=0.521 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHh
Q 008520 507 EKEEMLNAAVNRVSTLEQELSATKKALENSLAR 539 (563)
Q Consensus 507 EKEe~L~aa~~Rv~~~e~~l~~tkkaL~~al~k 539 (563)
|=|..||.|+.|---||.||+. |..|.+.+-|
T Consensus 4 D~EsklN~AIERnalLE~ELdE-KE~L~~~~QR 35 (166)
T PF04880_consen 4 DFESKLNQAIERNALLESELDE-KENLREEVQR 35 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHHHHHCH--
T ss_pred HHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHH
Confidence 4578899999999999999976 8888877755
No 48
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=23.56 E-value=6e+02 Score=23.59 Aligned_cols=59 Identities=20% Similarity=0.429 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCC-chHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Q 008520 483 MAKRMAELEDKVKMLTMKPSTMP-PEKEEMLNAAVNRVSTLEQELSATKKALENSLARQEELVAYIEKK 550 (563)
Q Consensus 483 ~~~r~~~lE~kv~~L~~KP~~mP-~EKEe~L~aa~~Rv~~~e~~l~~tkkaL~~al~kQ~El~ayie~~ 550 (563)
++..-..+|.-++.| |.+. .|.+++ .||+.||.|+...-+-|.+++.+=++|++-|+..
T Consensus 78 Ii~kakqIe~LIdsL----Pg~~~see~Q~-----~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~ 137 (144)
T PF11221_consen 78 IIRKAKQIEYLIDSL----PGIEVSEEEQL-----KRIKELEEENEEAEEELQEAVKEAEELLKQVQEL 137 (144)
T ss_dssp HHHHHHHHHHHHHHS----TTSSS-HHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC----CCCCCCHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444566666665 3333 344433 8999999999999999999999999999988764
No 49
>PRK09261 phospho-2-dehydro-3-deoxyheptonate aldolase; Validated
Probab=23.22 E-value=4e+02 Score=28.87 Aligned_cols=66 Identities=17% Similarity=0.210 Sum_probs=41.3
Q ss_pred cCCCCCcCCCCCCcEEEEEcCccCcchhhhcC-CHHHHHHHHHHHHHHHHhhhchhhhHhhcCCCCCEEEEEeCCCCC
Q 008520 146 YPQGHHGVDKDGQPVYIEWLGQVDSNKLMQVT-TMDRYLKYHVKEFERTFISKFPACSIAAKKHIDQSTTILDVQGVG 222 (563)
Q Consensus 146 yp~g~~G~Dk~GRPV~i~rlg~~d~~~l~~~~-~~d~~lk~~v~~lE~~l~~~~pacs~~~~~~i~~~tvIIDl~Gvs 222 (563)
.||.|.|.|++|++-++.-.|+-|..-+.+=. +...|-+..+......+.. . -...-+|||++.-+
T Consensus 205 ~~H~fl~~~~~G~~~~i~t~GN~~~hlilRGg~~~pNy~~~~i~~~~~~l~k----------~-~l~~~v~VD~SH~n 271 (349)
T PRK09261 205 APHHFLGITKDGRSAIVSTTGNPDCHVILRGGNKGPNYDAESVAEAKERLEK----------A-GLPPRIMIDCSHAN 271 (349)
T ss_pred CCceeeecCCCCcEEEEECCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHH----------c-CCCCCEEEECCCcc
Confidence 57778899999999999999987765444322 2333444444333332221 1 12467899998754
No 50
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=22.90 E-value=1e+02 Score=29.88 Aligned_cols=70 Identities=29% Similarity=0.380 Sum_probs=47.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCCCCCC-----CchHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhh
Q 008520 477 GADYMAMAKRMAELEDKVKMLTMKPSTM-----PPEKEEMLNAAVNRVSTLEQELSATKKALENSLARQEELVAYIEKKK 551 (563)
Q Consensus 477 ~~~~~~~~~r~~~lE~kv~~L~~KP~~m-----P~EKEe~L~aa~~Rv~~~e~~l~~tkkaL~~al~kQ~El~ayie~~~ 551 (563)
..+...+.+||++||+..+.++.|=..- =.|=|||+ .|+.+||+-+.+ ++...+++..-.+|-...+
T Consensus 91 e~~~~~l~~ri~eLe~~l~~kad~vvsYqll~hr~e~ee~~----~~l~~le~~~~~----~e~~~~~~~~~~~~~~~~~ 162 (175)
T PRK13182 91 EAQLNTITRRLDELERQLQQKADDVVSYQLLQHRREMEEML----ERLQKLEARLKK----LEPIYITPDTEPTYEREKK 162 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHH----HHHHHHHHHHHH----HHhhccCCccccccccccC
Confidence 4456778889999999988888774421 13556654 688888887765 6677777766655554444
Q ss_pred hhc
Q 008520 552 TKK 554 (563)
Q Consensus 552 ~~~ 554 (563)
.|+
T Consensus 163 ~kr 165 (175)
T PRK13182 163 PKR 165 (175)
T ss_pred Ccc
Confidence 333
No 51
>PF13234 rRNA_proc-arch: rRNA-processing arch domain; PDB: 4A4K_E 4A4Z_A 2XGJ_B 3L9O_A.
Probab=22.78 E-value=2.2e+02 Score=29.00 Aligned_cols=70 Identities=20% Similarity=0.217 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCchH-----HHHHHHHHHhHHhHHHHHHHHH-------HHHHHHHHhHHHHHHHH
Q 008520 480 YMAMAKRMAELEDKVKMLTMKPSTMPPEK-----EEMLNAAVNRVSTLEQELSATK-------KALENSLARQEELVAYI 547 (563)
Q Consensus 480 ~~~~~~r~~~lE~kv~~L~~KP~~mP~EK-----Ee~L~aa~~Rv~~~e~~l~~tk-------kaL~~al~kQ~El~ayi 547 (563)
-..+++.|+||... ....++.+-|.| ..=+.+.+.|+..||..|..-. ..+++...+..+|.+-|
T Consensus 182 r~~~~~~l~el~~r---~~~giP~LDPi~DmkI~d~~~~e~~~k~~~Le~rl~~~~~~~~~~~~~~~~~~~~k~~l~~~i 258 (268)
T PF13234_consen 182 RKQVLKSLQELLKR---FPDGIPLLDPIKDMKIKDPEFVELVKKIEALEKRLSSHPLHKCPDFEEHYALYHEKAELQEEI 258 (268)
T ss_dssp HHHHHHHHHHHHHH---SSS--TCHHCHHHH----HHHHHHHHHHHHHHHHHHHSCHCCSSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh---CCCCCCccChHHhCCCCcHHHHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHHHHHH
Confidence 44566666666555 233344444433 3445566666666666665543 45666666666666666
Q ss_pred Hhhhh
Q 008520 548 EKKKT 552 (563)
Q Consensus 548 e~~~~ 552 (563)
+..+.
T Consensus 259 ~~Lk~ 263 (268)
T PF13234_consen 259 KALKR 263 (268)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65553
No 52
>KOG0861 consensus SNARE protein YKT6, synaptobrevin/VAMP syperfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.22 E-value=95 Score=30.32 Aligned_cols=28 Identities=29% Similarity=0.496 Sum_probs=21.6
Q ss_pred CCchHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHh
Q 008520 504 MPPEKEEMLNAAVNRVSTLEQELSATKKALENSLAR 539 (563)
Q Consensus 504 mP~EKEe~L~aa~~Rv~~~e~~l~~tkkaL~~al~k 539 (563)
=|.|+.-|| -+.+||+.||-+||.|++-
T Consensus 132 dP~ead~l~--------kvQ~EldETKiiLhkTies 159 (198)
T KOG0861|consen 132 DPAEADPLL--------KVQNELDETKIILHKTIES 159 (198)
T ss_pred ChhhhChHH--------HHHHHHHHHHHHHHHHHHH
Confidence 466766665 3678999999999999754
No 53
>TIGR00034 aroFGH phospho-2-dehydro-3-deoxyheptonate aldolase.
Probab=21.71 E-value=1.4e+02 Score=32.11 Aligned_cols=68 Identities=16% Similarity=0.182 Sum_probs=41.8
Q ss_pred hcCCCCCcCCCCCCcEEEEEcCccCcchhhhcCCHHHHHHHHHHHHHHHHhhhchhhhHhhcCCCCCEEEEEeCCCCCC
Q 008520 145 YYPQGHHGVDKDGQPVYIEWLGQVDSNKLMQVTTMDRYLKYHVKEFERTFISKFPACSIAAKKHIDQSTTILDVQGVGL 223 (563)
Q Consensus 145 ~yp~g~~G~Dk~GRPV~i~rlg~~d~~~l~~~~~~d~~lk~~v~~lE~~l~~~~pacs~~~~~~i~~~tvIIDl~Gvsl 223 (563)
-+||.|.|.|++|++.++...|+-|..-+.+=.....|-+..+......+.. .+.. -.+|||++.-+-
T Consensus 199 ~~~H~fl~~~~~G~~~~i~t~GN~~~hlilRGg~~pNy~~~di~~~~~~l~~----------~~lp-~~vmVD~SH~ns 266 (344)
T TIGR00034 199 AAPHYFLSVTKDGQMAIVQTSGNPDGHIILRGGKKPNYSAADVAAAKKQLEK----------AGLP-PHLMIDFSHGNS 266 (344)
T ss_pred hCCceeeecCCCCcEEEEECCCCCCEEEEecCCCCCCCCHHHHHHHHHHHHH----------cCCC-CeEEEeCCCccc
Confidence 4688889999999999999999877654433221233444444444333321 1222 469999987643
No 54
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=20.70 E-value=1e+02 Score=31.79 Aligned_cols=18 Identities=44% Similarity=0.641 Sum_probs=15.2
Q ss_pred HHHHhHHhHHHHHHHHHH
Q 008520 514 AAVNRVSTLEQELSATKK 531 (563)
Q Consensus 514 aa~~Rv~~~e~~l~~tkk 531 (563)
+|+.||-|||.||..-+.
T Consensus 119 ~AlqKIsALEdELs~LRa 136 (253)
T PF05308_consen 119 AALQKISALEDELSRLRA 136 (253)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 689999999999987554
No 55
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=20.28 E-value=3.8e+02 Score=28.63 Aligned_cols=62 Identities=26% Similarity=0.474 Sum_probs=45.5
Q ss_pred cchhhHHHHHH----HHHHHHHHHHHhc-----CCCCCCCchHH-----HHHHHHHHhHHhHHHHHHHHHHHHHHH
Q 008520 475 ISGADYMAMAK----RMAELEDKVKMLT-----MKPSTMPPEKE-----EMLNAAVNRVSTLEQELSATKKALENS 536 (563)
Q Consensus 475 ~~~~~~~~~~~----r~~~lE~kv~~L~-----~KP~~mP~EKE-----e~L~aa~~Rv~~~e~~l~~tkkaL~~a 536 (563)
.+.|.|.-++. |-+.|+.+...+. .--+.+||+++ .+|..+-.|.+.|..|+..-+.=|.|+
T Consensus 23 ~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~ 98 (319)
T PF09789_consen 23 SERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEVEELRQKLNEA 98 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666655543 5567888888777 34445888877 899999999999999987776555443
No 56
>PRK10884 SH3 domain-containing protein; Provisional
Probab=20.14 E-value=3.4e+02 Score=27.06 Aligned_cols=75 Identities=12% Similarity=0.133 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhc
Q 008520 480 YMAMAKRMAELEDKVKMLTMKPSTMPPEKEEMLNAAVNRVSTLEQELSATKKALENSLARQEELVAYIEKKKTKK 554 (563)
Q Consensus 480 ~~~~~~r~~~lE~kv~~L~~KP~~mP~EKEe~L~aa~~Rv~~~e~~l~~tkkaL~~al~kQ~El~ayie~~~~~~ 554 (563)
+-.+=+.+++|+++.+.+...-.+--.|..+-+.++=.-+..|+.|...-++-|..+-.+=++|-+-++.+++..
T Consensus 95 lp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~ 169 (206)
T PRK10884 95 VPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTI 169 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344455555555554433222223334445556666666777777777777776666666666677766543
No 57
>COG5104 PRP40 Splicing factor [RNA processing and modification]
Probab=20.07 E-value=2.7e+02 Score=31.05 Aligned_cols=33 Identities=21% Similarity=0.359 Sum_probs=27.5
Q ss_pred CchHHHHHHHHHHhHHhHHHHHHHHHHHHHHHH
Q 008520 505 PPEKEEMLNAAVNRVSTLEQELSATKKALENSL 537 (563)
Q Consensus 505 P~EKEe~L~aa~~Rv~~~e~~l~~tkkaL~~al 537 (563)
|..++++|++=++-|+.||.||+..+.-+..+.
T Consensus 323 ~l~~~d~L~~f~~~v~~lE~el~~~~~e~k~~~ 355 (590)
T COG5104 323 PLDRKDILFSFIRYVRRLEKELLSAIEERKAAA 355 (590)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999987765444433
Done!