Query 008520
Match_columns 563
No_of_seqs 328 out of 1552
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 05:29:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008520.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008520hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3q8g_A CRAL-TRIO domain-contai 100.0 6.4E-56 2.2E-60 460.9 17.4 265 64-331 33-304 (320)
2 1aua_A Phosphatidylinositol tr 100.0 3.1E-55 1.1E-59 449.2 20.3 264 65-331 25-289 (296)
3 1olm_A SEC14-like protein 2; l 100.0 4.2E-46 1.4E-50 397.5 22.5 243 64-312 6-249 (403)
4 3hx3_A Retinaldehyde-binding p 100.0 5.5E-45 1.9E-49 377.9 16.8 236 59-310 45-294 (316)
5 1r5l_A Alpha-TTP, protein (alp 100.0 1.1E-44 3.8E-49 363.3 15.1 230 65-310 3-235 (262)
6 3pg7_A Neurofibromin; SEC lipi 99.0 2.1E-10 7.1E-15 115.4 6.9 140 136-300 4-144 (256)
7 3peg_A Neurofibromin; SEC14 do 98.7 9E-09 3.1E-13 105.2 5.9 127 152-300 36-163 (290)
8 2hy6_A General control protein 71.9 0.93 3.2E-05 30.9 0.3 15 485-499 1-15 (34)
9 2bni_A General control protein 71.5 0.96 3.3E-05 30.8 0.3 16 485-500 1-16 (34)
10 2wq1_A General control protein 70.1 6.2 0.00021 26.7 4.0 14 486-499 1-14 (33)
11 3c3f_A Alpha/beta peptide with 69.6 6.4 0.00022 26.8 4.0 15 485-499 1-15 (34)
12 1uo4_A General control protein 68.6 5 0.00017 27.4 3.3 15 485-499 1-15 (34)
13 3c3g_A Alpha/beta peptide with 67.9 1.4 4.7E-05 29.8 0.5 14 486-499 1-14 (33)
14 2oxj_A Hybrid alpha/beta pepti 67.8 5.7 0.0002 27.0 3.5 15 485-499 1-15 (34)
15 3m48_A General control protein 65.6 5.7 0.0002 26.9 3.2 13 486-498 1-13 (33)
16 1nkp_A C-MYC, MYC proto-oncoge 63.8 38 0.0013 27.9 8.7 67 485-551 16-86 (88)
17 1kd8_A GABH AIV, GCN4 acid bas 63.3 8.7 0.0003 26.5 3.8 14 485-498 1-14 (36)
18 1nkp_B MAX protein, MYC proto- 63.0 35 0.0012 27.4 8.3 65 485-549 12-79 (83)
19 2dam_A ETEA protein; KIAA0887, 60.7 25 0.00085 27.5 6.7 46 64-117 12-57 (67)
20 1kd8_B GABH BLL, GCN4 acid bas 57.1 19 0.00064 24.8 4.5 16 485-500 1-16 (36)
21 3a8y_C BAG family molecular ch 55.5 26 0.0009 31.6 6.7 68 478-552 34-110 (142)
22 1uk5_A BAG-family molecular ch 55.1 59 0.002 28.1 8.6 68 477-551 29-105 (111)
23 1m62_A BAG-family molecular ch 53.6 49 0.0017 27.4 7.6 67 477-550 10-85 (87)
24 2r2v_A GCN4 leucine zipper; co 51.6 21 0.00071 24.3 4.0 16 485-500 1-16 (34)
25 2dal_A Protein KIAA0794; FAS a 48.5 32 0.0011 26.4 5.4 41 66-115 11-51 (62)
26 1wgl_A TOLL-interacting protei 43.9 29 0.001 26.5 4.4 38 72-117 11-48 (59)
27 1m7k_A Silencer of death domai 43.6 69 0.0024 27.1 7.1 67 476-549 22-97 (99)
28 1yke_B RNA polymerase II holoe 42.4 1.6E+02 0.0055 26.6 10.0 69 475-551 50-126 (151)
29 1ugo_A BCL2-associated athanog 42.3 43 0.0015 28.4 5.6 69 478-550 18-92 (99)
30 1v92_A NSFL1 cofactor P47; 3-h 41.5 35 0.0012 24.0 4.4 37 70-115 5-41 (46)
31 3htk_A Structural maintenance 39.8 1.1E+02 0.0036 22.8 7.1 46 508-553 10-55 (60)
32 1ykh_B RNA polymerase II holoe 39.2 2E+02 0.0068 25.3 10.2 68 475-550 50-125 (132)
33 1ic2_A Tropomyosin alpha chain 39.2 70 0.0024 25.7 6.3 59 480-542 15-73 (81)
34 2dhy_A CUE domain-containing p 38.3 52 0.0018 25.8 5.2 43 68-118 16-58 (67)
35 2oqq_A Transcription factor HY 35.2 24 0.00082 25.2 2.5 15 484-498 16-30 (42)
36 2q9q_C DNA replication complex 31.5 1.2E+02 0.0041 28.3 7.6 27 503-529 20-46 (196)
37 3rrk_A V-type ATPase 116 kDa s 30.8 1.5E+02 0.005 29.9 8.8 65 488-552 199-269 (357)
38 1ufz_A Hypothetical protein BA 30.0 66 0.0022 26.4 4.6 40 72-118 36-75 (83)
39 1z96_A DNA-damage, UBA-domain 29.5 86 0.0029 21.1 4.7 21 95-115 19-39 (40)
40 2dah_A Ubiquilin-3; UBA domain 27.4 1.6E+02 0.0053 21.9 6.1 38 72-118 11-48 (54)
41 3e21_A HFAF1, FAS-associated f 27.4 1.2E+02 0.0041 21.8 5.2 37 70-114 5-41 (45)
42 3etw_A Adhesin A; antiparallel 27.4 98 0.0033 27.0 5.6 72 481-552 5-106 (119)
43 2l5g_B Putative uncharacterize 26.6 1E+02 0.0035 22.0 4.5 36 507-546 3-38 (42)
44 2ke4_A CDC42-interacting prote 26.0 73 0.0025 26.8 4.4 46 490-536 41-88 (98)
45 2z5i_I TM, tropomyosin alpha-1 25.9 44 0.0015 23.7 2.5 20 513-532 20-39 (40)
46 1hlo_A Protein (transcription 24.5 85 0.0029 25.0 4.4 47 485-531 22-71 (80)
47 2dna_A Unnamed protein product 23.9 2.6E+02 0.0089 21.8 7.1 44 65-117 12-57 (67)
48 2ql2_B Neurod1, neurogenic dif 23.7 89 0.003 23.8 4.1 43 485-527 12-58 (60)
49 1oai_A Nuclear RNA export fact 23.4 1.8E+02 0.0063 21.9 5.9 46 65-119 2-47 (59)
50 1wr1_B Ubiquitin-like protein 23.4 1.6E+02 0.0055 22.2 5.5 38 71-117 18-55 (58)
51 2lw1_A ABC transporter ATP-bin 23.2 2.9E+02 0.0099 22.2 7.6 64 477-545 21-84 (89)
52 4aya_A DNA-binding protein inh 22.9 1E+02 0.0036 25.9 4.7 45 484-528 34-82 (97)
53 3u1c_A Tropomyosin alpha-1 cha 22.3 1.9E+02 0.0064 24.2 6.3 57 482-542 20-76 (101)
54 3t98_B Nucleoporin NUP58/NUP45 22.2 2.1E+02 0.0071 23.8 6.5 60 479-542 20-79 (93)
55 1vej_A Riken cDNA 4931431F19; 22.0 1.8E+02 0.006 23.2 5.7 38 71-117 30-67 (74)
56 1g8x_A Myosin II heavy chain f 21.4 3E+02 0.01 32.3 9.9 62 483-547 819-888 (1010)
57 1nlw_A MAD protein, MAX dimeri 20.8 3.2E+02 0.011 21.7 8.4 64 485-548 11-78 (80)
58 2di0_A Activating signal coint 20.1 1.7E+02 0.0059 23.2 5.2 43 67-117 10-52 (71)
No 1
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Probab=100.00 E-value=6.4e-56 Score=460.95 Aligned_cols=265 Identities=37% Similarity=0.656 Sum_probs=244.1
Q ss_pred cCCCHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCCcccccchh------
Q 008520 64 DCLNAEEMQAVDAFRQALVLDELLPAKHDDHHMMLRFLKARKFDIEKTKQMWGDMLQWRKEFGADTIMEDFEFK------ 137 (563)
Q Consensus 64 d~~d~eE~~aV~elR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~k~l~~~l~WRk~~~~D~I~~d~~~~------ 137 (563)
..++++|+++|++||+||..++ ++.+.|| .+|+||||||+||+++|.+||.++++||+++++|+++.++.+.
T Consensus 33 ~~lt~~q~~~l~~lR~~l~~~~-~~~~~dD-~~LLRFLRArkfdv~kA~~mL~~~l~WRk~~~vd~i~~~~~~~~~~~~~ 110 (320)
T 3q8g_A 33 GNLTKEQEEALLQFRSILLEKN-YKERLDD-STLLRFLRARKFDINASVEMFVETERWREEYGANTIIEDYENNKEAEDK 110 (320)
T ss_dssp TCCCHHHHHHHHHHHHHHHHTT-CCSSCSH-HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTGGGHHHHHHHTHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhcC-CCCCCCH-HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCccccccccccccccchh
Confidence 4578999999999999999988 4556666 7999999999999999999999999999999999998776554
Q ss_pred HHHHHHhhcCCCCCcCCCCCCcEEEEEcCccCcchhhhcCCHHHHHHHHHHHHHHHHhhhchhhhHhhcCCCCCEEEEEe
Q 008520 138 EIDEVLKYYPQGHHGVDKDGQPVYIEWLGQVDSNKLMQVTTMDRYLKYHVKEFERTFISKFPACSIAAKKHIDQSTTILD 217 (563)
Q Consensus 138 el~ev~k~yp~g~~G~Dk~GRPV~i~rlg~~d~~~l~~~~~~d~~lk~~v~~lE~~l~~~~pacs~~~~~~i~~~tvIID 217 (563)
+...+.++|+++++|+|++||||+|+++|++|+.++++.++.+++++++++.+|.++...+|+|+...+..++++++|+|
T Consensus 111 e~~~~~~~~~~~~~g~Dk~GRpV~i~r~g~~d~~~l~~~~~~~~~lr~lv~~~E~~~~~~l~~~s~~~G~~ve~~~~IiD 190 (320)
T 3q8g_A 111 ERIKLAKMYPQYYHHVDKDGRPLYFAELGGINLKKMYKITTEKQMLRNLVKEYELFATYRVPACSRRAGYLIETSCTVLD 190 (320)
T ss_dssp HHHHHHTTSCEEEEEECTTCCEEEEEECTTCCHHHHHHHCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEEE
T ss_pred HHHHHHHhCCceecCCCCCcCEEEEEeccccCHHHhhccCCHHHHHHHHHHHHHHHHHHhhhHHHHhcCCCcceeEEEEE
Confidence 44557789999999999999999999999999999888889999999999999999887788888878888999999999
Q ss_pred CCCCCCCCccHHHHHHHHHHHHHhccccccccceEEEEecChHHHHHHHHHhhcCCccccceEEEeCCcchHHHHccCCC
Q 008520 218 VQGVGLKNFNKAARDLVQRIQKIDGDNYPETLNRMFIVNAGSGFRLLWNTVKSFLDPKTTAKIHVLGNKYQSKLLEIIDA 297 (563)
Q Consensus 218 l~Gvsl~~~~k~~~~llk~i~kilqd~YPErL~~I~IINaP~~f~~lW~iVK~FLd~kT~~KI~~l~~~~~~~L~e~Id~ 297 (563)
++|+|++++++ ...+++.+++++|+|||+||+++||||+|++|.++|+++|+||+++|++||+|+++++.+.|.++||+
T Consensus 191 ~~g~sl~~~~~-~~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~~~~~ikpfl~~~t~~KI~~~~~~~~~~L~~~i~~ 269 (320)
T 3q8g_A 191 LKGISLSNAYH-VLSYIKDVADISQNYYPERMGKFYIIHSPFGFSTMFKMVKPFLDPVTVSKIFILGSSYKKELLKQIPI 269 (320)
T ss_dssp CTTCCHHHHHH-THHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHTTTGGGSCHHHHHTEEECCTTHHHHHHHHSCG
T ss_pred CCCCCHHHHHH-HHHHHHHHHHHHHhhCchhhceEEEECCCHHHHHHHHHHHHhCCHHHhhhEEEeCCCcHHHHHhhCCh
Confidence 99999999864 37889999999999999999999999999999999999999999999999999998888999999999
Q ss_pred CCCCccCCCCCCCCC-CCCCccCCCCCCCChHHHH
Q 008520 298 NELPDFLGGTCTCAD-KGGCMRSDKGPWNDPEIMK 331 (563)
Q Consensus 298 s~LP~elGGt~~~~~-~ggc~~sd~gpw~~pe~l~ 331 (563)
++||++|||+++|.+ +|||+.+|.|||++|++++
T Consensus 270 ~~LP~~yGG~~~~~~~~ggc~~~~~gpw~~~~~~~ 304 (320)
T 3q8g_A 270 ENLPVKYGGTSVLHNPNDKFYYSDIGPWRDPRYIG 304 (320)
T ss_dssp GGSBGGGTSCBCCSSTTSCGGGBCBSGGGCTTTCC
T ss_pred hhCChhhCCCCCCCCCCCCeecCCCCCCCChhhcC
Confidence 999999999999987 6999999999999998865
No 2
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1
Probab=100.00 E-value=3.1e-55 Score=449.22 Aligned_cols=264 Identities=39% Similarity=0.692 Sum_probs=243.1
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCCcccccchhHHHHHHh
Q 008520 65 CLNAEEMQAVDAFRQALVLDELLPAKHDDHHMMLRFLKARKFDIEKTKQMWGDMLQWRKEFGADTIMEDFEFKEIDEVLK 144 (563)
Q Consensus 65 ~~d~eE~~aV~elR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~k~l~~~l~WRk~~~~D~I~~d~~~~el~ev~k 144 (563)
.++++|+++|++||+||..++ ++...|| .+|+||||||+||+++|.+||.++++||+++++++++.++.+.+...+.+
T Consensus 25 ~l~~~q~~~l~~lr~~l~~~~-~~~~~dd-~~LlRFLrarkfdv~~A~~~l~~~l~wR~~~~~~~i~~~~~~~~~~~~~~ 102 (296)
T 1aua_A 25 NLDSAQEKALAELRKLLEDAG-FIERLDD-STLLRFLRARKFDVQLAKEMFENCEKWRKDYGTDTILQDFHYDEKPLIAK 102 (296)
T ss_dssp TCCTTHHHHHHHHHHHHHHTT-CCSSCSH-HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTGGGHHHHCCCTTHHHHGG
T ss_pred CCCHHHHHHHHHHHHHHHhcC-CCCCCch-HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCcchhhhccccCcHHHHHH
Confidence 457788999999999999887 4666666 79999999999999999999999999999999999887766555455778
Q ss_pred hcCCCCCcCCCCCCcEEEEEcCccCcchhhhcCCHHHHHHHHHHHHHHHHhhhchhhhHhhcCCCCCEEEEEeCCCCCCC
Q 008520 145 YYPQGHHGVDKDGQPVYIEWLGQVDSNKLMQVTTMDRYLKYHVKEFERTFISKFPACSIAAKKHIDQSTTILDVQGVGLK 224 (563)
Q Consensus 145 ~yp~g~~G~Dk~GRPV~i~rlg~~d~~~l~~~~~~d~~lk~~v~~lE~~l~~~~pacs~~~~~~i~~~tvIIDl~Gvsl~ 224 (563)
+|+++++|+|++||||+|+++|++|+.++++..+.+++++++++.+|.++...+|+|+...+.+++++++|+|++|+|++
T Consensus 103 ~~~~~~~g~Dk~GrpV~i~~~g~~d~~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~s~~~g~~v~~~~~I~D~~g~s~~ 182 (296)
T 1aua_A 103 FYPQYYHKTDKDGRPVYFEELGAVNLHEMNKVTSEERMLKNLVWEYESVVQYRLPACSRAAGHLVETSCTIMDLKGISIS 182 (296)
T ss_dssp GSCCEEEEECTTSCEEEEECGGGCCHHHHTTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEEECTTCCHH
T ss_pred hCCceecccCCCCCEEEEEeeccCChHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEEEEECCCCCHH
Confidence 89988999999999999999999999998888899999999999999999887888988778889999999999999999
Q ss_pred CccHHHHHHHHHHHHHhccccccccceEEEEecChHHHHHHHHHhhcCCccccceEEEeCCcchHHHHccCCCCCCCccC
Q 008520 225 NFNKAARDLVQRIQKIDGDNYPETLNRMFIVNAGSGFRLLWNTVKSFLDPKTTAKIHVLGNKYQSKLLEIIDANELPDFL 304 (563)
Q Consensus 225 ~~~k~~~~llk~i~kilqd~YPErL~~I~IINaP~~f~~lW~iVK~FLd~kT~~KI~~l~~~~~~~L~e~Id~s~LP~el 304 (563)
|++.. +++++.+++++|+|||+||+++||||+|++|.++|+++|+||+++|++||+|+++++.+.|.++||+++||++|
T Consensus 183 ~~~~~-~~~~k~~~~~~q~~YPerl~~i~iiN~P~~f~~~~~iikpfl~~~t~~KI~~~~~~~~~~L~~~i~~~~LP~~y 261 (296)
T 1aua_A 183 SAYSV-MSYVREASYISQNYYPERMGKFYIINAPFGFSTAFRLFKPFLDPVTVSKIFILGSSYQKELLKQIPAENLPVKF 261 (296)
T ss_dssp HHHHH-HHHHHHHHHHHHHHSTTCEEEEEEESCCHHHHHHHHHHGGGSCHHHHTTEEECCSCCHHHHTTTSCSSSSBGGG
T ss_pred HHHHH-HHHHHHHHHHHHHhHHHhhCeEEEECchHHHHHHHHHHHhhcCHhhcceEEEeCcccHHHHHhhCCHhhCcHHh
Confidence 88753 78899999999999999999999999999999999999999999999999999988889999999999999999
Q ss_pred CCCCCCCC-CCCCccCCCCCCCChHHHH
Q 008520 305 GGTCTCAD-KGGCMRSDKGPWNDPEIMK 331 (563)
Q Consensus 305 GGt~~~~~-~ggc~~sd~gpw~~pe~l~ 331 (563)
||+++|.+ +|||+.++.|||++|++++
T Consensus 262 GG~~~~~~~~~g~~~~~~~~w~~~~~~~ 289 (296)
T 1aua_A 262 GGKSEVDESKGGLYLSDIGPWRDPKYIG 289 (296)
T ss_dssp TSCBCCCGGGCCSTTCCCSGGGCGGGCC
T ss_pred CCCCCCCCCCCCceeCCCCCCCChhhcc
Confidence 99999987 6899999999999999864
No 3
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*
Probab=100.00 E-value=4.2e-46 Score=397.47 Aligned_cols=243 Identities=31% Similarity=0.489 Sum_probs=217.6
Q ss_pred cCCCHHHHHHHHHHHHHHHhCC-CCCCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCCcccccchhHHHHH
Q 008520 64 DCLNAEEMQAVDAFRQALVLDE-LLPAKHDDHHMMLRFLKARKFDIEKTKQMWGDMLQWRKEFGADTIMEDFEFKEIDEV 142 (563)
Q Consensus 64 d~~d~eE~~aV~elR~~L~~~~-~Lp~~~dD~~~LLRFLrArkfDvekA~k~l~~~l~WRk~~~~D~I~~d~~~~el~ev 142 (563)
..++++|+++|++||++|.... ++| ..+| .+|+||||||+||+++|.+||.++++||++++++++++.. .++ .+
T Consensus 6 ~~l~~~q~~~l~~lr~~l~~~~~~l~-~~dD-~~LlRFLrarkfdv~~A~~~l~~~l~wR~~~~~~~i~~~~-~~~--~~ 80 (403)
T 1olm_A 6 GDLSPRQKEALAKFRENVQDVLPALP-NPDD-YFLLRWLRARSFDLQKSEAMLRKHVEFRKQKDIDNIISWQ-PPE--VI 80 (403)
T ss_dssp TBCCHHHHHHHHHHHHHHGGGGGGSS-CCCH-HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTGGGGGGSC-CCH--HH
T ss_pred cCCCHHHHHHHHHHHHHHHhhccCCC-CCCh-hHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCcccccC-CHH--HH
Confidence 3568999999999999999873 455 3555 7999999999999999999999999999999999887632 222 35
Q ss_pred HhhcCCCCCcCCCCCCcEEEEEcCccCcchhhhcCCHHHHHHHHHHHHHHHHhhhchhhhHhhcCCCCCEEEEEeCCCCC
Q 008520 143 LKYYPQGHHGVDKDGQPVYIEWLGQVDSNKLMQVTTMDRYLKYHVKEFERTFISKFPACSIAAKKHIDQSTTILDVQGVG 222 (563)
Q Consensus 143 ~k~yp~g~~G~Dk~GRPV~i~rlg~~d~~~l~~~~~~d~~lk~~v~~lE~~l~~~~pacs~~~~~~i~~~tvIIDl~Gvs 222 (563)
.++++++++|+|++||||+|+++|.+|+.++++..+.+++++++++.+|.++... +.++...+.++.++++|+|++|++
T Consensus 81 ~~~~~~~~~g~Dk~GrpV~~~~~g~~d~~~l~~~~~~~~~~r~~~~~~E~~~~~~-~~~s~~~g~~v~~~~~I~D~~g~s 159 (403)
T 1olm_A 81 QQYLSGGMCGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKMRECELLLQEC-AHQTTKLGRKVETITIIYDCEGLG 159 (403)
T ss_dssp HHHCCBEEEEECTTSCEEEEEECTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHH-HHHHHHHTSCCCCEEEEEECTTCC
T ss_pred HHhCCceeeccCCCcCEEEEEecCCCChHHhhccCCHHHHHHHHHHHHHHHHHHH-HhhHHhhCCcccceEEEEECCCCC
Confidence 6788889999999999999999999999998888899999999999999998753 344444566789999999999999
Q ss_pred CCCccHHHHHHHHHHHHHhccccccccceEEEEecChHHHHHHHHHhhcCCccccceEEEeCCcchHHHHccCCCCCCCc
Q 008520 223 LKNFNKAARDLVQRIQKIDGDNYPETLNRMFIVNAGSGFRLLWNTVKSFLDPKTTAKIHVLGNKYQSKLLEIIDANELPD 302 (563)
Q Consensus 223 l~~~~k~~~~llk~i~kilqd~YPErL~~I~IINaP~~f~~lW~iVK~FLd~kT~~KI~~l~~~~~~~L~e~Id~s~LP~ 302 (563)
++++++..+++++.+++++|+|||+||+++||||+|++|.++|+++|+||+++|++||+|+++++.+.|.++||+++||+
T Consensus 160 l~~~~~~~~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~i~~~ikpfl~~~t~~KI~~~~~~~~~~L~~~I~~~~LP~ 239 (403)
T 1olm_A 160 LKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLGANWKEVLLKHISPDQVPV 239 (403)
T ss_dssp GGGGCHHHHHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHHHHGGGSCHHHHHTEEECCTTHHHHHTTTSCGGGSBG
T ss_pred HHHHhhHHHHHHHHHHHHHHhhCcHhhCeEEEEeCCHHHHHHHHHHHhhcCHhhhceEEEEChhHHHHHHhhcChhhCch
Confidence 99998878899999999999999999999999999999999999999999999999999999888889999999999999
Q ss_pred cCCCCCCCCC
Q 008520 303 FLGGTCTCAD 312 (563)
Q Consensus 303 elGGt~~~~~ 312 (563)
+|||++++++
T Consensus 240 ~yGG~~~~~~ 249 (403)
T 1olm_A 240 EYGGTMTDPD 249 (403)
T ss_dssp GGTSSBCCTT
T ss_pred hhCCCcCCCC
Confidence 9999998853
No 4
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A*
Probab=100.00 E-value=5.5e-45 Score=377.88 Aligned_cols=236 Identities=20% Similarity=0.328 Sum_probs=197.5
Q ss_pred ccccccCCCHHH--HHHHHHHHHHHHhCCCCC-----------CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHc
Q 008520 59 SVSIEDCLNAEE--MQAVDAFRQALVLDELLP-----------AKHDDHHMMLRFLKARKFDIEKTKQMWGDMLQWRKEF 125 (563)
Q Consensus 59 s~~ied~~d~eE--~~aV~elR~~L~~~~~Lp-----------~~~dD~~~LLRFLrArkfDvekA~k~l~~~l~WRk~~ 125 (563)
..+.+++++.++ +++|++||+||.++|+++ .++|| .+|+||||||+||+++|.+||.++++||+++
T Consensus 45 ~~a~~eL~E~~~~~~~~l~~LR~wi~~~p~l~~~l~~~~~~~~~~~dD-~~LlRFLRarkfdv~kA~~~L~~~l~wR~~~ 123 (316)
T 3hx3_A 45 QKAKDELNEREETREEAVRELQEMVQAQAASGEELAVAVAERVQEKDS-GFFLRFIRARKFNVGRAYELLRGYVNFRLQY 123 (316)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHTTTCCH-HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhCCChHHHHHHHHHHHHHHHhCCCccccccccccccCCCCCH-HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhC
Confidence 345566655444 689999999999998874 34555 7999999999999999999999999999999
Q ss_pred CCCCcccccchhHHHHHH-hhcCCCCCcCCCCCCcEEEEEcCccCcchhhhcCCHHHHHHHHHHHHHHHHhhhchhhhHh
Q 008520 126 GADTIMEDFEFKEIDEVL-KYYPQGHHGVDKDGQPVYIEWLGQVDSNKLMQVTTMDRYLKYHVKEFERTFISKFPACSIA 204 (563)
Q Consensus 126 ~~D~I~~d~~~~el~ev~-k~yp~g~~G~Dk~GRPV~i~rlg~~d~~~l~~~~~~d~~lk~~v~~lE~~l~~~~pacs~~ 204 (563)
+. ++.+..+.++.... ..++.+++|+|++||||+|+++|++|+.+ .+.+++++++++.+|.++..
T Consensus 124 ~~--~~~~~~~~~i~~~l~~g~~~~l~g~Dk~GrpVii~r~g~~d~~~----~~~~~~~r~~~~~lE~~l~~-------- 189 (316)
T 3hx3_A 124 PE--LFDSLSPEAVRCTIEAGYPGVLSSRDKYGRVVMLFNIENWQSQE----ITFDEILQAYCFILEKLLEN-------- 189 (316)
T ss_dssp GG--GTTTCCHHHHHHHHHTTSSEECSSCCTTSCEEEEEECTTCCTTT----SCHHHHHHHHHHHHHHHTTS--------
T ss_pred ch--hhcCCCHHHHHHHHHcCCccccCCCCCCCCEEEEEecccCCCCC----CCHHHHHHHHHHHHHHHHhc--------
Confidence 73 44455555554433 45666788999999999999999999987 48899999999999998753
Q ss_pred hcCCCCCEEEEEeCCCCCCCCccHHHHHHHHHHHHHhccccccccceEEEEecChHHHHHHHHHhhcCCccccceEEEeC
Q 008520 205 AKKHIDQSTTILDVQGVGLKNFNKAARDLVQRIQKIDGDNYPETLNRMFIVNAGSGFRLLWNTVKSFLDPKTTAKIHVLG 284 (563)
Q Consensus 205 ~~~~i~~~tvIIDl~Gvsl~~~~k~~~~llk~i~kilqd~YPErL~~I~IINaP~~f~~lW~iVK~FLd~kT~~KI~~l~ 284 (563)
...++.|+++|+|++|+|++|+.+.....++.+++++|+|||+||+++||||+|++|.++|+++|+||+++|++||+|++
T Consensus 190 ~~~~v~g~v~IiD~~g~sl~~~~~~~~~~~k~~~~~lq~~YPerL~~i~iiN~P~~f~~i~~ivkpfl~~kt~~KI~~~~ 269 (316)
T 3hx3_A 190 EETQINGFCIIENFKGFTMQQAASLRTSDLRKMVDMLQDSFPAWFKAIHFIHQPWYFTTTYNVVKPFLKSKLLERVFVHG 269 (316)
T ss_dssp HHHHHHCEEEEEECTTCCHHHHHHCCHHHHHHHHHHHHTTSTTTEEEEEEESCCTTHHHHHHHHGGGCCHHHHTTEEEEE
T ss_pred ccCCcceEEEEEECCCCCHHHhccCChHHHHHHHHHHHHhhhhhhceEEEEeCCHHHHHHHHHHHHhCCHHhhhheEEeC
Confidence 22457899999999999999876555678999999999999999999999999999999999999999999999999998
Q ss_pred CcchHHHHccCCCCCCCccCCCCCCC
Q 008520 285 NKYQSKLLEIIDANELPDFLGGTCTC 310 (563)
Q Consensus 285 ~~~~~~L~e~Id~s~LP~elGGt~~~ 310 (563)
+++ +.|+++||+++||++|||++++
T Consensus 270 ~~~-~~L~~~I~~~~LP~eyGG~~~~ 294 (316)
T 3hx3_A 270 DDL-SGFYQEIDENILPSDFGGTLPK 294 (316)
T ss_dssp TCC-HHHHHHSCGGGSBGGGTSSBCC
T ss_pred CCH-HHHHhhCCHhhCcHhhCCCCCC
Confidence 776 7999999999999999999976
No 5
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A*
Probab=100.00 E-value=1.1e-44 Score=363.27 Aligned_cols=230 Identities=22% Similarity=0.334 Sum_probs=193.1
Q ss_pred CCCHHHHHHHHHHHHHHHhCC--CCCCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCCcccccchhHHHHH
Q 008520 65 CLNAEEMQAVDAFRQALVLDE--LLPAKHDDHHMMLRFLKARKFDIEKTKQMWGDMLQWRKEFGADTIMEDFEFKEIDEV 142 (563)
Q Consensus 65 ~~d~eE~~aV~elR~~L~~~~--~Lp~~~dD~~~LLRFLrArkfDvekA~k~l~~~l~WRk~~~~D~I~~d~~~~el~ev 142 (563)
.++++|+++|++||+++..++ ++|...+| .+|+||||||+||+++|.+||.++++||++++ .+..++.+.++...
T Consensus 3 ~ls~~~~~~l~~lr~~l~~~~~~~~~~~~dd-~~LlRFLra~k~dv~~A~~~l~~~l~wR~~~~--~i~~~~~~~~~~~~ 79 (262)
T 1r5l_A 3 HMSPLLQPGLAALRRRAREAGVPLAPLPLTD-SFLLRFLRARDFDLDLAWRLLKNYYKWRAECP--EISADLHPRSIIGL 79 (262)
T ss_dssp ------CTTHHHHHHHHHHHTCCCSSSCCCH-HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHCH--HHHSCCCGGGTHHH
T ss_pred CccHHHHHHHHHHHHHHHhCCcccCCCCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCh--HhhhcCChHHHHHH
Confidence 467888899999999999865 45666666 79999999999999999999999999999986 23333344444333
Q ss_pred -HhhcCCCCCcCCCCCCcEEEEEcCccCcchhhhcCCHHHHHHHHHHHHHHHHhhhchhhhHhhcCCCCCEEEEEeCCCC
Q 008520 143 -LKYYPQGHHGVDKDGQPVYIEWLGQVDSNKLMQVTTMDRYLKYHVKEFERTFISKFPACSIAAKKHIDQSTTILDVQGV 221 (563)
Q Consensus 143 -~k~yp~g~~G~Dk~GRPV~i~rlg~~d~~~l~~~~~~d~~lk~~v~~lE~~l~~~~pacs~~~~~~i~~~tvIIDl~Gv 221 (563)
...++.+++|+|++||||+|+++|.+|+.+ .+.+++++++++.+|.++... ..++.|+++|+|++|+
T Consensus 80 ~~~g~~~~l~g~D~~GrpV~i~~~~~~d~~~----~~~~~~~r~~~~~~E~~~~~~--------~~~~~g~~~I~D~~g~ 147 (262)
T 1r5l_A 80 LKAGYHGVLRSRDPTGSKVLIYRIAHWDPKV----FTAYDVFRVSLITSELIVQEV--------ETQRNGIKAIFDLEGW 147 (262)
T ss_dssp HHTTCEEECSSCCTTCCEEEEEEGGGCCTTT----SCHHHHHHHHHHHHHHHTTSH--------HHHHHCEEEEEECTTC
T ss_pred HHcCCccCCCCcCCCCCEEEEEeccccCccc----CCHHHHHHHHHHHHHHHHhCh--------hhcccceEEEEECCCC
Confidence 334455678999999999999999999977 478899999999999876531 1235789999999999
Q ss_pred CCCCccHHHHHHHHHHHHHhccccccccceEEEEecChHHHHHHHHHhhcCCccccceEEEeCCcchHHHHccCCCCCCC
Q 008520 222 GLKNFNKAARDLVQRIQKIDGDNYPETLNRMFIVNAGSGFRLLWNTVKSFLDPKTTAKIHVLGNKYQSKLLEIIDANELP 301 (563)
Q Consensus 222 sl~~~~k~~~~llk~i~kilqd~YPErL~~I~IINaP~~f~~lW~iVK~FLd~kT~~KI~~l~~~~~~~L~e~Id~s~LP 301 (563)
|++|+++...++++.+++++|+|||++|+++||||+|++|.++|+++||||+++|++||+|+++++.+.|.++|| ++||
T Consensus 148 s~~~~~~~~~~~~k~~~~~~q~~yPerl~~i~ivN~P~~f~~~~~~vkpfl~~~t~~Ki~~~~~~~~~~L~~~i~-~~LP 226 (262)
T 1r5l_A 148 QFSHAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKERIHMHGNNYKQSLLQHFP-DILP 226 (262)
T ss_dssp CHHHHHHCCHHHHHHHHHHHHTSSSSCEEEEEEESCCGGGHHHHHHHGGGSCHHHHTTEEECCSSCHHHHHHHST-TTSC
T ss_pred CHHHHhccCHHHHHHHHHHHHhhCChhhceEEEEeCCHHHHHHHHHHHHhcCHHHHhheEEeCCCcHHHHHHHhh-hhCc
Confidence 999887656788999999999999999999999999999999999999999999999999999888899999999 9999
Q ss_pred ccCCCCCCC
Q 008520 302 DFLGGTCTC 310 (563)
Q Consensus 302 ~elGGt~~~ 310 (563)
++|||++..
T Consensus 227 ~~yGG~~~~ 235 (262)
T 1r5l_A 227 LEYGGEEFS 235 (262)
T ss_dssp GGGTCSSCC
T ss_pred HhhCCCCCC
Confidence 999999864
No 6
>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A*
Probab=99.03 E-value=2.1e-10 Score=115.37 Aligned_cols=140 Identities=15% Similarity=0.218 Sum_probs=112.0
Q ss_pred hhHHHHHHhhcCCCCCcCCCCCCcEEEEEcCccCcchhhhcCCHHHHHHHHHHHHHHHHhhhchhhhHhhcCCCCCEEEE
Q 008520 136 FKEIDEVLKYYPQGHHGVDKDGQPVYIEWLGQVDSNKLMQVTTMDRYLKYHVKEFERTFISKFPACSIAAKKHIDQSTTI 215 (563)
Q Consensus 136 ~~el~ev~k~yp~g~~G~Dk~GRPV~i~rlg~~d~~~l~~~~~~d~~lk~~v~~lE~~l~~~~pacs~~~~~~i~~~tvI 215 (563)
+.++++..-+|. .|.|++||||+++...++++.. .+++.++.|.+..++... -...++|
T Consensus 4 ~~~i~~~~ify~---~G~d~dGrpViv~~~~~l~~~~----~D~e~Ll~~vl~tl~~~~--------------~~~y~lV 62 (256)
T 3pg7_A 4 FKALKTLSIFYQ---AGTSKAGNPIFYYVARRFKTGQ----INGDLLIYHVLLTLKPYY--------------AKPYEIV 62 (256)
T ss_dssp TTTHHHHTSEEE---EEECTTSCEEEEEEGGGCCBTT----BCHHHHHHHHHHHHTTTT--------------TSCEEEE
T ss_pred hhHHHHcCCEEE---cCcCCCCCEEEEEEeecCCCCC----CCHHHHHHHHHHHHHHhc--------------CCCeEEE
Confidence 345555555553 3789999999999999998765 478888777776666432 2568999
Q ss_pred EeCCCCCCCCccHHHHHHHHHHHHHhccccccccceEEEEecChHHHHHHHHH-hhcCCccccceEEEeCCcchHHHHcc
Q 008520 216 LDVQGVGLKNFNKAARDLVQRIQKIDGDNYPETLNRMFIVNAGSGFRLLWNTV-KSFLDPKTTAKIHVLGNKYQSKLLEI 294 (563)
Q Consensus 216 IDl~Gvsl~~~~k~~~~llk~i~kilqd~YPErL~~I~IINaP~~f~~lW~iV-K~FLd~kT~~KI~~l~~~~~~~L~e~ 294 (563)
+|+.|++..+.+ ..++++.+.+++...|...|+++||+|++++|+..|+.+ ++|.+.+..+|++++++ .++|.++
T Consensus 63 ~d~T~~~~~n~p--~~~wl~~~~~llp~~~~kNlk~~Yivnpt~~~k~~~~~~~~~~~~~k~~~Ki~fv~s--l~eL~~~ 138 (256)
T 3pg7_A 63 VDLTHTGPSNRF--KTDFLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFIDC--PGKLAEH 138 (256)
T ss_dssp EECTTCCGGGCC--CHHHHHHTTTSSCHHHHHTEEEEEEESCCHHHHHHHHHTHHHHTTTTTCTTEEEESS--TTGGGGT
T ss_pred EECCCCCcccCC--cHHHHHHHHHHcCHHHHhcccEEEEECCCHHHHHHHHHHhccccccccCCcEEEECC--HHHHHhh
Confidence 999999987655 367899999999999999999999999999999777664 55666688899999966 5899999
Q ss_pred CCCCCC
Q 008520 295 IDANEL 300 (563)
Q Consensus 295 Id~s~L 300 (563)
|+.++|
T Consensus 139 i~~~~L 144 (256)
T 3pg7_A 139 IEHEQQ 144 (256)
T ss_dssp SCGGGC
T ss_pred cCHHHc
Confidence 987776
No 7
>3peg_A Neurofibromin; SEC14 domain, pleckstrin homology domain, PH domain, phosphatidylethanolamin binding, lipid binding, lipid bindi protein; HET: PEV; 2.52A {Homo sapiens}
Probab=98.72 E-value=9e-09 Score=105.20 Aligned_cols=127 Identities=14% Similarity=0.178 Sum_probs=95.6
Q ss_pred cCCCCCCcEEEEEcCccCcchhhhcCCHHHHHHHHHHHHHHHHhhhchhhhHhhcCCCCCEEEEEeCCCCCCCCccHHHH
Q 008520 152 GVDKDGQPVYIEWLGQVDSNKLMQVTTMDRYLKYHVKEFERTFISKFPACSIAAKKHIDQSTTILDVQGVGLKNFNKAAR 231 (563)
Q Consensus 152 G~Dk~GRPV~i~rlg~~d~~~l~~~~~~d~~lk~~v~~lE~~l~~~~pacs~~~~~~i~~~tvIIDl~Gvsl~~~~k~~~ 231 (563)
|.|++||||+++.+++++... .+.+.++-|.+..++... -...++|+|++|++..+-+ ..
T Consensus 36 g~d~dG~PViv~~~~~~~~~~----~D~e~Lly~il~tl~~~~--------------~~~y~lV~D~T~~~~~n~p--~~ 95 (290)
T 3peg_A 36 GTSKAGNPIFYYVARRFKTGQ----INGDLLIYHVLLTLKPYY--------------AKPYEIVVDLTHTGPSNRF--KT 95 (290)
T ss_dssp EECTTSCEEEEEEGGGCCBTT----BCHHHHHHHHHHHHTTTT--------------TSCEEEEEECTTCCGGGCC--CH
T ss_pred ccCCCCCEEEEEEeecCCccC----CCHHHHHHHHHHHHHHhc--------------CCCeEEEEEcCCCCccCCC--hH
Confidence 789999999999999998765 477777766666555432 2579999999999987654 36
Q ss_pred HHHHHHHHHhccccccccceEEEEecChHHHHHH-HHHhhcCCccccceEEEeCCcchHHHHccCCCCCC
Q 008520 232 DLVQRIQKIDGDNYPETLNRMFIVNAGSGFRLLW-NTVKSFLDPKTTAKIHVLGNKYQSKLLEIIDANEL 300 (563)
Q Consensus 232 ~llk~i~kilqd~YPErL~~I~IINaP~~f~~lW-~iVK~FLd~kT~~KI~~l~~~~~~~L~e~Id~s~L 300 (563)
++++.+..++...|+..++++||+|++.+|+..+ ...++|...+..+|+.++++- ..|..+++++++
T Consensus 96 ~~l~~~~~llp~~~~kNl~~~Yi~np~~~f~~~~k~~~~~~~~~k~~~k~v~~~~~--~~L~~~i~~~~~ 163 (290)
T 3peg_A 96 DFLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFIDCP--GKLAEHIEHEQQ 163 (290)
T ss_dssp HHHGGGGTSSCHHHHHTEEEEEEESCCHHHHHHHHHTTTTGGGGTTCTTEEEESSS--CC----------
T ss_pred HHHHHHHHHCCHHHHhhccEEEEECCCHHHHHHHHHHHhhhhhhhcCceEEEcCCH--HHHHhhCCHHHh
Confidence 7899999999999999999999999999998754 567888888899999998653 458888877643
No 8
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=71.90 E-value=0.93 Score=30.87 Aligned_cols=15 Identities=27% Similarity=0.408 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHhcC
Q 008520 485 KRMAELEDKVKMLTM 499 (563)
Q Consensus 485 ~r~~~lE~kv~~L~~ 499 (563)
+||..||+||.+|-.
T Consensus 1 ~RMnQLEdkVEeLl~ 15 (34)
T 2hy6_A 1 MKVKQLADAVEELAS 15 (34)
T ss_dssp --CHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHH
Confidence 488889999987754
No 9
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=71.51 E-value=0.96 Score=30.85 Aligned_cols=16 Identities=38% Similarity=0.588 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHhcCC
Q 008520 485 KRMAELEDKVKMLTMK 500 (563)
Q Consensus 485 ~r~~~lE~kv~~L~~K 500 (563)
+||..||+||.+|-.+
T Consensus 1 eRMnQLEdKvEeLl~~ 16 (34)
T 2bni_A 1 XRMKQIEDKLEEILSK 16 (34)
T ss_dssp --CHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHc
Confidence 5899999999887543
No 10
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=70.10 E-value=6.2 Score=26.69 Aligned_cols=14 Identities=50% Similarity=0.624 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHhcC
Q 008520 486 RMAELEDKVKMLTM 499 (563)
Q Consensus 486 r~~~lE~kv~~L~~ 499 (563)
||..||+||.+|-.
T Consensus 1 RMnQLEdKVEell~ 14 (33)
T 2wq1_A 1 RMKQLEDKIEENTS 14 (33)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHH
Confidence 68889999987743
No 11
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=69.58 E-value=6.4 Score=26.75 Aligned_cols=15 Identities=27% Similarity=0.452 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHhcC
Q 008520 485 KRMAELEDKVKMLTM 499 (563)
Q Consensus 485 ~r~~~lE~kv~~L~~ 499 (563)
+||..||+||.+|-.
T Consensus 1 eRMnQLEdKVEeLl~ 15 (34)
T 3c3f_A 1 XRMXQIEXKLEXILS 15 (34)
T ss_dssp -CHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHh
Confidence 589999999987743
No 12
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=68.55 E-value=5 Score=27.37 Aligned_cols=15 Identities=33% Similarity=0.443 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHhcC
Q 008520 485 KRMAELEDKVKMLTM 499 (563)
Q Consensus 485 ~r~~~lE~kv~~L~~ 499 (563)
.||..||+||.+|-.
T Consensus 1 ~RM~QLEdKVEeLl~ 15 (34)
T 1uo4_A 1 XRMKQIEDKGEEILS 15 (34)
T ss_dssp --CHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHH
Confidence 388899999987743
No 13
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=67.90 E-value=1.4 Score=29.83 Aligned_cols=14 Identities=29% Similarity=0.385 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHhcC
Q 008520 486 RMAELEDKVKMLTM 499 (563)
Q Consensus 486 r~~~lE~kv~~L~~ 499 (563)
||..||+||.+|-.
T Consensus 1 RMnQLEdKvEeLl~ 14 (33)
T 3c3g_A 1 RMKXIEXKLXEIXS 14 (33)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHH
Confidence 68889999987754
No 14
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=67.81 E-value=5.7 Score=27.03 Aligned_cols=15 Identities=47% Similarity=0.485 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHhcC
Q 008520 485 KRMAELEDKVKMLTM 499 (563)
Q Consensus 485 ~r~~~lE~kv~~L~~ 499 (563)
+||..||+||.+|-.
T Consensus 1 eRMnQLE~kVEeLl~ 15 (34)
T 2oxj_A 1 XRMXQLEXKVXELLX 15 (34)
T ss_dssp -CHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHH
Confidence 588999999988753
No 15
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=65.61 E-value=5.7 Score=26.93 Aligned_cols=13 Identities=62% Similarity=0.741 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHhc
Q 008520 486 RMAELEDKVKMLT 498 (563)
Q Consensus 486 r~~~lE~kv~~L~ 498 (563)
||..||+||.+|-
T Consensus 1 RM~QLE~kVEeLl 13 (33)
T 3m48_A 1 RMAQLEAKVEELL 13 (33)
T ss_dssp --CHHHHHHHHHH
T ss_pred CccHHHHHHHHHH
Confidence 7888999998774
No 16
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=63.78 E-value=38 Score=27.86 Aligned_cols=67 Identities=18% Similarity=0.144 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHhcCCCCCCC----chHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhh
Q 008520 485 KRMAELEDKVKMLTMKPSTMP----PEKEEMLNAAVNRVSTLEQELSATKKALENSLARQEELVAYIEKKK 551 (563)
Q Consensus 485 ~r~~~lE~kv~~L~~KP~~mP----~EKEe~L~aa~~Rv~~~e~~l~~tkkaL~~al~kQ~El~ayie~~~ 551 (563)
+|-..|=+.+..|..-=|.+| ..|-.+|..|++=|+.|+.+...-..-...--.+|.+|.+-|+..+
T Consensus 16 ~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L~ 86 (88)
T 1nkp_A 16 QRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 677888888888877666665 5899999999999999998877665555555566777777666543
No 17
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=63.30 E-value=8.7 Score=26.46 Aligned_cols=14 Identities=21% Similarity=0.392 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHhc
Q 008520 485 KRMAELEDKVKMLT 498 (563)
Q Consensus 485 ~r~~~lE~kv~~L~ 498 (563)
+||..||+||.+|-
T Consensus 1 eRMnQLE~kVEeLl 14 (36)
T 1kd8_A 1 XEVKQLEAEVEEIE 14 (36)
T ss_dssp -CCHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHH
Confidence 47778888887663
No 18
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=63.02 E-value=35 Score=27.44 Aligned_cols=65 Identities=11% Similarity=0.235 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHhcCCCCCCC---chHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Q 008520 485 KRMAELEDKVKMLTMKPSTMP---PEKEEMLNAAVNRVSTLEQELSATKKALENSLARQEELVAYIEK 549 (563)
Q Consensus 485 ~r~~~lE~kv~~L~~KP~~mP---~EKEe~L~aa~~Rv~~~e~~l~~tkkaL~~al~kQ~El~ayie~ 549 (563)
+|...|=+.+..|..=-|..| ..|-.+|..|++=|+.|+.+...-+.-+.+--..+.+|-+-|..
T Consensus 12 ~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~ 79 (83)
T 1nkp_B 12 KRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRA 79 (83)
T ss_dssp HHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577778888888876644332 48999999999999999988877666665555555555555544
No 19
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=60.75 E-value=25 Score=27.49 Aligned_cols=46 Identities=15% Similarity=0.122 Sum_probs=35.3
Q ss_pred cCCCHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Q 008520 64 DCLNAEEMQAVDAFRQALVLDELLPAKHDDHHMMLRFLKARKFDIEKTKQMWGD 117 (563)
Q Consensus 64 d~~d~eE~~aV~elR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~k~l~~ 117 (563)
..++.++.+.|.+|...-. ..|......||.+.+||++.|+..+-+
T Consensus 12 ~~Ls~~~~e~i~qF~~ITg--------~~d~~~A~~~Le~~~WnLe~Av~~ff~ 57 (67)
T 2dam_A 12 RDLTQEQTEKLLQFQDLTG--------IESMDQCRHTLEQHNWNIEAAVQDRLN 57 (67)
T ss_dssp CCCCHHHHHHHHHHHHHHC--------CSCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred hhcChhHHHHHHHHHHHhC--------CCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 3467778889999988643 134468899999999999999877643
No 20
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=57.08 E-value=19 Score=24.84 Aligned_cols=16 Identities=31% Similarity=0.449 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHhcCC
Q 008520 485 KRMAELEDKVKMLTMK 500 (563)
Q Consensus 485 ~r~~~lE~kv~~L~~K 500 (563)
+||..||+||.+|-.+
T Consensus 1 eRMnQLE~KVEeLl~~ 16 (36)
T 1kd8_B 1 XKVKQLKAKVEELKSK 16 (36)
T ss_dssp -CHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHH
Confidence 5888899999877543
No 21
>3a8y_C BAG family molecular chaperone regulator 5; BAG domain, HSP70, ATPase domain, protein complex, triple helix, structural genomics, NPPSFA; 2.30A {Homo sapiens}
Probab=55.55 E-value=26 Score=31.56 Aligned_cols=68 Identities=13% Similarity=0.307 Sum_probs=52.8
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCCCCCchHH-----HHHHHHHHhHHhHHHH----HHHHHHHHHHHHHhHHHHHHHHH
Q 008520 478 ADYMAMAKRMAELEDKVKMLTMKPSTMPPEKE-----EMLNAAVNRVSTLEQE----LSATKKALENSLARQEELVAYIE 548 (563)
Q Consensus 478 ~~~~~~~~r~~~lE~kv~~L~~KP~~mP~EKE-----e~L~aa~~Rv~~~e~~----l~~tkkaL~~al~kQ~El~ayie 548 (563)
..+..+..++++|+.+|+....| +.||| |||.--+=+.|++|.+ +-..+|+ ++-+=.-++++||
T Consensus 34 ~aI~~V~~eVd~L~~eV~~F~G~----~~dkey~~L~E~L~k~LLKLD~IdteGd~~vR~aRK~---aVk~VQ~~Le~LD 106 (142)
T 3a8y_C 34 KAVWNVLGNLSEIQGEVLSFDGN----RTDKNYIRLEELLTKQLLALDAVDPQGEEKCKAARKQ---AVRLAQNILSYLD 106 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCSC----TTSHHHHHHHHHHHHHHHHHHTCCCTTCHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCC----chHHHHHHHHHHHHHHHHHHcCcCCCCCHHHHHHHHH---HHHHHHHHHHHHH
Confidence 35788899999999999999776 57774 8999999999999887 4455554 4555566888888
Q ss_pred hhhh
Q 008520 549 KKKT 552 (563)
Q Consensus 549 ~~~~ 552 (563)
.+..
T Consensus 107 ~k~~ 110 (142)
T 3a8y_C 107 LKSD 110 (142)
T ss_dssp HHHC
T ss_pred HhhH
Confidence 7664
No 22
>1uk5_A BAG-family molecular chaperone regulator-3; triple helix bandle, CAIR-1, BIS, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.7.7.1
Probab=55.08 E-value=59 Score=28.12 Aligned_cols=68 Identities=16% Similarity=0.305 Sum_probs=51.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCCCCCCCchHH-----HHHHHHHHhHHhHHHH----HHHHHHHHHHHHHhHHHHHHHH
Q 008520 477 GADYMAMAKRMAELEDKVKMLTMKPSTMPPEKE-----EMLNAAVNRVSTLEQE----LSATKKALENSLARQEELVAYI 547 (563)
Q Consensus 477 ~~~~~~~~~r~~~lE~kv~~L~~KP~~mP~EKE-----e~L~aa~~Rv~~~e~~----l~~tkkaL~~al~kQ~El~ayi 547 (563)
-..+..+...+.+|+..|+....++ .||| |||.--+=++|++|.| +-..+|+ ++-+=.-++++|
T Consensus 29 ~~~I~~I~~eV~~L~~qV~~f~g~k----~dkey~~L~E~L~k~LLkLD~IeteG~~~vR~aRK~---aVk~iQ~~l~~L 101 (111)
T 1uk5_A 29 VLKVEAILEKVQGLEQAVDSFEGKK----TDKKYLMIEEYLTKELLALDSVDPEGRADVRQARRD---GVRKVQTILEKL 101 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCSCS----SSHHHHHHHHHHHHHHHHHHSCCCSSCHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCc----chHHHHHHHHHHHHHHHHHCCcCcCCcHHHHHHHHH---HHHHHHHHHHHH
Confidence 4567888889999999999998876 6774 8899999999999887 5555554 344445577777
Q ss_pred Hhhh
Q 008520 548 EKKK 551 (563)
Q Consensus 548 e~~~ 551 (563)
|.+.
T Consensus 102 D~k~ 105 (111)
T 1uk5_A 102 EQKA 105 (111)
T ss_dssp HHHH
T ss_pred Hhcc
Confidence 7653
No 23
>1m62_A BAG-family molecular chaperone regulator-4; BAG domain, SODD, silencer of death domains, HSP70/HSC70 CO-chaperone; NMR {Homo sapiens} SCOP: a.7.7.1
Probab=53.64 E-value=49 Score=27.36 Aligned_cols=67 Identities=19% Similarity=0.327 Sum_probs=49.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCCCCCCCchHH-----HHHHHHHHhHHhHHHH----HHHHHHHHHHHHHhHHHHHHHH
Q 008520 477 GADYMAMAKRMAELEDKVKMLTMKPSTMPPEKE-----EMLNAAVNRVSTLEQE----LSATKKALENSLARQEELVAYI 547 (563)
Q Consensus 477 ~~~~~~~~~r~~~lE~kv~~L~~KP~~mP~EKE-----e~L~aa~~Rv~~~e~~----l~~tkkaL~~al~kQ~El~ayi 547 (563)
-.-+..+...+.+|+..|+....| +.||| |||.--+=.+|++|.+ +-..+|+. +-+=.-++++|
T Consensus 10 ~~~I~~I~~ev~~L~~~V~~f~g~----~~dkey~~L~E~L~k~LLkLD~Ie~eG~~~~R~~RK~~---Vk~iQ~~l~~L 82 (87)
T 1m62_A 10 IKKIIHVLEKVQYLEQEVEEFVGK----KTDKAYWLLEEMLTKELLELDSVETGGQDSVRQARKEA---VCKIQAILEKL 82 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCC----TTSHHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCC----cchHHHHHHHHHHHHHHHHHCCcCcCCcHHHHHHHHHH---HHHHHHHHHHH
Confidence 345788889999999999999987 46774 7899999999999887 55555543 33334566666
Q ss_pred Hhh
Q 008520 548 EKK 550 (563)
Q Consensus 548 e~~ 550 (563)
|.+
T Consensus 83 D~k 85 (87)
T 1m62_A 83 EKK 85 (87)
T ss_dssp HHH
T ss_pred Hhc
Confidence 653
No 24
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=51.58 E-value=21 Score=24.34 Aligned_cols=16 Identities=19% Similarity=0.424 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHhcCC
Q 008520 485 KRMAELEDKVKMLTMK 500 (563)
Q Consensus 485 ~r~~~lE~kv~~L~~K 500 (563)
+||..||+||.+|.+|
T Consensus 1 ~RMnQledKvEel~~~ 16 (34)
T 2r2v_A 1 MKLKQVADKLEEVASK 16 (34)
T ss_dssp -CHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHH
Confidence 4788999999887653
No 25
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.55 E-value=32 Score=26.36 Aligned_cols=41 Identities=12% Similarity=0.127 Sum_probs=31.4
Q ss_pred CCHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHcCCCHHHHHHHH
Q 008520 66 LNAEEMQAVDAFRQALVLDELLPAKHDDHHMMLRFLKARKFDIEKTKQMW 115 (563)
Q Consensus 66 ~d~eE~~aV~elR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~k~l 115 (563)
+...+.+.|.+|...-. .+......||.+.+||++.|+..+
T Consensus 11 ~s~~~~e~i~qF~~iTg---------~~~~~A~~~Le~~~WnLe~Av~~f 51 (62)
T 2dal_A 11 ASSALKGLIQQFTTITG---------ASESVGKHMLEACNNNLEMAVTMF 51 (62)
T ss_dssp SCHHHHHHHHHHHHHTC---------CCHHHHHHHHHTTTSCHHHHHHHH
T ss_pred cCccHHHHHHHHHHHhC---------CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 35667778899986532 124688999999999999998766
No 26
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=43.85 E-value=29 Score=26.50 Aligned_cols=38 Identities=13% Similarity=0.240 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Q 008520 72 QAVDAFRQALVLDELLPAKHDDHHMMLRFLKARKFDIEKTKQMWGD 117 (563)
Q Consensus 72 ~aV~elR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~k~l~~ 117 (563)
+.|++|++. .|. .+. ..+..-|+++++|++.|..+|.+
T Consensus 11 e~l~~L~em------FP~-ld~-~~I~~vL~a~~gdvd~aI~~LL~ 48 (59)
T 1wgl_A 11 EDLKAIQDM------FPN-MDQ-EVIRSVLEAQRGNKDAAINSLLQ 48 (59)
T ss_dssp HHHHHHHHH------CSS-SCH-HHHHHHHTTTTTCHHHHHHHHHH
T ss_pred HHHHHHHHH------CCC-CCH-HHHHHHHHHcCCCHHHHHHHHHc
Confidence 556666664 454 344 68999999999999999998865
No 27
>1m7k_A Silencer of death domains; three helix bundle, chaperone; NMR {Homo sapiens} SCOP: a.7.7.1
Probab=43.63 E-value=69 Score=27.10 Aligned_cols=67 Identities=19% Similarity=0.322 Sum_probs=49.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHhcCCCCCCCchHH-----HHHHHHHHhHHhHHHH----HHHHHHHHHHHHHhHHHHHHH
Q 008520 476 SGADYMAMAKRMAELEDKVKMLTMKPSTMPPEKE-----EMLNAAVNRVSTLEQE----LSATKKALENSLARQEELVAY 546 (563)
Q Consensus 476 ~~~~~~~~~~r~~~lE~kv~~L~~KP~~mP~EKE-----e~L~aa~~Rv~~~e~~----l~~tkkaL~~al~kQ~El~ay 546 (563)
.-.-+..+...+.+|+..|+.+..++ .||| |||.--+=.+|++|.+ +-..+|++ +-+=.-++++
T Consensus 22 ~~~kI~~I~~ev~~L~~~V~~f~G~k----~dkey~~L~E~L~k~LLkLD~IeteG~~~vR~~RK~~---Vk~iQ~~l~~ 94 (99)
T 1m7k_A 22 SIKKIIHVLEKVQYLEQEVEEFVGKK----TDKAYWLLEEMLTKELLELDSVETGGQDSVRQARKEA---VCKIQAILEK 94 (99)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHCCSCT----TSHHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCc----hHHHHHHHHHHHHHHHHHHCCcCcCCcHHHHHHHHHH---HHHHHHHHHH
Confidence 34458889999999999999999874 6674 7899999999999887 55555543 3333456666
Q ss_pred HHh
Q 008520 547 IEK 549 (563)
Q Consensus 547 ie~ 549 (563)
||.
T Consensus 95 LD~ 97 (99)
T 1m7k_A 95 LEK 97 (99)
T ss_dssp HHH
T ss_pred Hhc
Confidence 665
No 28
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=42.42 E-value=1.6e+02 Score=26.61 Aligned_cols=69 Identities=10% Similarity=0.311 Sum_probs=53.3
Q ss_pred cchhhHHHHHHHH--------HHHHHHHHHhcCCCCCCCchHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhHHHHHHH
Q 008520 475 ISGADYMAMAKRM--------AELEDKVKMLTMKPSTMPPEKEEMLNAAVNRVSTLEQELSATKKALENSLARQEELVAY 546 (563)
Q Consensus 475 ~~~~~~~~~~~r~--------~~lE~kv~~L~~KP~~mP~EKEe~L~aa~~Rv~~~e~~l~~tkkaL~~al~kQ~El~ay 546 (563)
.+.+.|..-+++| +.+|.-++.| |..=-.|.|+ +.||+.||.|+...-+-|.+++.+=++|++-
T Consensus 50 ~~~~~f~~~~~ela~dli~kakqIe~LIdsL---Pg~~~seeeQ-----~~ri~~Le~E~~~~~~el~~~v~eae~ll~~ 121 (151)
T 1yke_B 50 VPPEEFSNTIDELSTDIILKTRQINKLIDSL---PGVDVSAEEQ-----LRKIDMLQKKLVEVEDEKIEAIKKKEKLLRH 121 (151)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---TTSSSCHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CCCCCCHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777 6778777777 3333345544 5899999999999999999999999999998
Q ss_pred HHhhh
Q 008520 547 IEKKK 551 (563)
Q Consensus 547 ie~~~ 551 (563)
|+..-
T Consensus 122 v~~~l 126 (151)
T 1yke_B 122 VDSLI 126 (151)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87654
No 29
>1ugo_A BCL2-associated athanogene 5; triple helix bundle, riken structural genomics/proteomics initiative, RSGI, structural genomics, chaperone; NMR {Mus musculus} SCOP: a.7.7.1
Probab=42.32 E-value=43 Score=28.41 Aligned_cols=69 Identities=14% Similarity=0.262 Sum_probs=48.2
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCCCCCchH-----HHHHHHHHHhHHhHHHHHHH-HHHHHHHHHHhHHHHHHHHHhh
Q 008520 478 ADYMAMAKRMAELEDKVKMLTMKPSTMPPEK-----EEMLNAAVNRVSTLEQELSA-TKKALENSLARQEELVAYIEKK 550 (563)
Q Consensus 478 ~~~~~~~~r~~~lE~kv~~L~~KP~~mP~EK-----Ee~L~aa~~Rv~~~e~~l~~-tkkaL~~al~kQ~El~ayie~~ 550 (563)
.-+..+...+.+|+..|.....|+ .|| +|||.--+=.+|++|.|=.. .+-|=.+++-+=.-++++||.+
T Consensus 18 ~kI~~I~~ev~~L~~~V~~f~g~k----~dkey~~L~E~L~k~LLkLD~IeteG~~~iR~~RK~~Vk~iQ~~l~~LD~k 92 (99)
T 1ugo_A 18 SRLQEIQREVKAIEPQVVGFSGLS----DDKNYKRLERILTKQLFEIDSVDTEGKGDIQQARKRAAQETERLLKELEQN 92 (99)
T ss_dssp HHHHHHHHHHHHSHHHHHTCCCCT----TSSHHHHHHHHHHHHHHHHHHSCCSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCc----hhHHHHHHHHHHHHHHHHHcCcCcCCcHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 457888899999999999998887 355 48888889999999876222 2222223344445566677664
No 30
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=41.45 E-value=35 Score=24.00 Aligned_cols=37 Identities=14% Similarity=0.206 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHcCCCHHHHHHHH
Q 008520 70 EMQAVDAFRQALVLDELLPAKHDDHHMMLRFLKARKFDIEKTKQMW 115 (563)
Q Consensus 70 E~~aV~elR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~k~l 115 (563)
+.+.|.+|...-. .+......||.+.+||++.|+..+
T Consensus 5 ~~~~i~~F~~iTg---------~~~~~A~~~L~~~~wdle~Ai~~f 41 (46)
T 1v92_A 5 RQDALREFVAVTG---------AEEDRARFFLESAGWDLQIALASF 41 (46)
T ss_dssp HHHHHHHHHHHTC---------CCHHHHHHHHHHTTSCSHHHHHHH
T ss_pred HHHHHHHHHHHhC---------cCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4567888876421 134688999999999999998765
No 31
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=39.85 E-value=1.1e+02 Score=22.82 Aligned_cols=46 Identities=15% Similarity=0.221 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhh
Q 008520 508 KEEMLNAAVNRVSTLEQELSATKKALENSLARQEELVAYIEKKKTK 553 (563)
Q Consensus 508 KEe~L~aa~~Rv~~~e~~l~~tkkaL~~al~kQ~El~ayie~~~~~ 553 (563)
.++-++..=.+++.++.++..++..|..+...+..+.+.|.+++..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~q 55 (60)
T 3htk_A 10 LENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQ 55 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556888899999999999999999999999999888653
No 32
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=39.17 E-value=2e+02 Score=25.27 Aligned_cols=68 Identities=10% Similarity=0.328 Sum_probs=52.2
Q ss_pred cchhhHHHHHHHH--------HHHHHHHHHhcCCCCCCCchHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhHHHHHHH
Q 008520 475 ISGADYMAMAKRM--------AELEDKVKMLTMKPSTMPPEKEEMLNAAVNRVSTLEQELSATKKALENSLARQEELVAY 546 (563)
Q Consensus 475 ~~~~~~~~~~~r~--------~~lE~kv~~L~~KP~~mP~EKEe~L~aa~~Rv~~~e~~l~~tkkaL~~al~kQ~El~ay 546 (563)
.+.+.|..-.++| +.+|.-++.| |..=-.|.|+ ..||+.||.|+...-+-|.+++.+=++|++-
T Consensus 50 ~~~~~f~~~~~ela~dli~k~kqIe~LIdsL---P~~~~see~Q-----~~ri~~L~~E~~~~~~el~~~v~e~e~ll~~ 121 (132)
T 1ykh_B 50 VPPEEFSNTIDELSTDIILKTRQINKLIDSL---PGVDVSAEEQ-----LRKIDMLQKKLVEVEDEKIEAIKKKEKLMRH 121 (132)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS---TTTTCCHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CCCCCCHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777766 6778777777 3333345444 5899999999999999999999999999988
Q ss_pred HHhh
Q 008520 547 IEKK 550 (563)
Q Consensus 547 ie~~ 550 (563)
|+..
T Consensus 122 v~~~ 125 (132)
T 1ykh_B 122 VDSM 125 (132)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 33
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=39.17 E-value=70 Score=25.68 Aligned_cols=59 Identities=19% Similarity=0.185 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhHHH
Q 008520 480 YMAMAKRMAELEDKVKMLTMKPSTMPPEKEEMLNAAVNRVSTLEQELSATKKALENSLARQEE 542 (563)
Q Consensus 480 ~~~~~~r~~~lE~kv~~L~~KP~~mP~EKEe~L~aa~~Rv~~~e~~l~~tkkaL~~al~kQ~E 542 (563)
.-....|+..+|.++.....+- ...|+-+.+=-.||..||.||..+.-.|.++..+-++
T Consensus 15 ~d~a~~~~~~~e~~l~~~e~~~----~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLee 73 (81)
T 1ic2_A 15 KENALDRAEQAEADKKAAEERS----KQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLEL 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566666666666554332 2456667777789999999999999999988877554
No 34
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=38.32 E-value=52 Score=25.82 Aligned_cols=43 Identities=26% Similarity=0.285 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Q 008520 68 AEEMQAVDAFRQALVLDELLPAKHDDHHMMLRFLKARKFDIEKTKQMWGDM 118 (563)
Q Consensus 68 ~eE~~aV~elR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~k~l~~~ 118 (563)
.+..+++++|++. .|. .+. ..+..-|+++++|++.|.+.|.++
T Consensus 16 ~~~~~~v~~L~~M------FP~-lD~-~vI~~vL~a~~G~vd~aId~LL~m 58 (67)
T 2dhy_A 16 LEFNQAMDDFKTM------FPN-MDY-DIIECVLRANSGAVDATIDQLLQM 58 (67)
T ss_dssp CCSHHHHHHHHHH------CSS-SCH-HHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH------CCC-CCH-HHHHHHHHHcCCCHHHHHHHHHhc
Confidence 3345677777775 343 344 689999999999999999888664
No 35
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=35.21 E-value=24 Score=25.19 Aligned_cols=15 Identities=27% Similarity=0.541 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHhc
Q 008520 484 AKRMAELEDKVKMLT 498 (563)
Q Consensus 484 ~~r~~~lE~kv~~L~ 498 (563)
=.|.+|||++|.+|+
T Consensus 16 e~~naeLEervstLq 30 (42)
T 2oqq_A 16 ENKNSELEERLSTLQ 30 (42)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 345555555555554
No 36
>2q9q_C DNA replication complex GINS protein PSF1; elongated spindle, helix bundle, replication; HET: DNA; 2.36A {Homo sapiens}
Probab=31.48 E-value=1.2e+02 Score=28.33 Aligned_cols=27 Identities=15% Similarity=0.286 Sum_probs=17.7
Q ss_pred CCCchHHHHHHHHHHhHHhHHHHHHHH
Q 008520 503 TMPPEKEEMLNAAVNRVSTLEQELSAT 529 (563)
Q Consensus 503 ~mP~EKEe~L~aa~~Rv~~~e~~l~~t 529 (563)
++||=.++++..-+.+|+.+++++.+.
T Consensus 20 ~L~py~~dlv~~v~~ei~~~~~~~~~~ 46 (196)
T 2q9q_C 20 QLPAFNEDGLRQVLEEMKALYEQNQSD 46 (196)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 566666667777777777666666543
No 37
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=30.85 E-value=1.5e+02 Score=29.89 Aligned_cols=65 Identities=14% Similarity=0.162 Sum_probs=51.4
Q ss_pred HHHHHHHHHhcCCCCCCCch-----HHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHh-HHHHHHHHHhhhh
Q 008520 488 AELEDKVKMLTMKPSTMPPE-----KEEMLNAAVNRVSTLEQELSATKKALENSLAR-QEELVAYIEKKKT 552 (563)
Q Consensus 488 ~~lE~kv~~L~~KP~~mP~E-----KEe~L~aa~~Rv~~~e~~l~~tkkaL~~al~k-Q~El~ayie~~~~ 552 (563)
+++++-+..+.-..-.+|.+ =.++|..--.|+..|+.+|..+++.|.+-+.+ ...|.++.+....
T Consensus 199 ~~v~~il~s~~f~~~~~p~~~~~~~p~~~l~~l~~~i~~l~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~ 269 (357)
T 3rrk_A 199 EAARSSLSRLGLAELRFPGAYGAMPLGKAAARMKERARLAPEELVGIREEVARLSRESGEALIALWTRAKD 269 (357)
T ss_dssp HHHHHHHHTTTCCBCCCCGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCeeccCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777888888889853 35888888999999999999999999998888 6667766665543
No 38
>1ufz_A Hypothetical protein BAB28515; HBS1-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, translatio; NMR {Mus musculus} SCOP: a.5.9.1
Probab=30.03 E-value=66 Score=26.39 Aligned_cols=40 Identities=20% Similarity=0.286 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Q 008520 72 QAVDAFRQALVLDELLPAKHDDHHMMLRFLKARKFDIEKTKQMWGDM 118 (563)
Q Consensus 72 ~aV~elR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~k~l~~~ 118 (563)
..|+++|..|.. ...| ..|.+-..+.+||+++|+..+.+-
T Consensus 36 SCLd~iR~VlGd------sV~e-~~Lv~ailk~dfD~ekALd~vL~~ 75 (83)
T 1ufz_A 36 SCLDHMREVLGD------AVPD-DILTEAILKHKFDVQKALSVVLEQ 75 (83)
T ss_dssp HHHHHHHHHTTT------TSCH-HHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcc------cCCH-HHHHHHHHHhcCCHHHHHHHHHhc
Confidence 567888888763 2234 588899999999999999887643
No 39
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=29.51 E-value=86 Score=21.08 Aligned_cols=21 Identities=14% Similarity=0.083 Sum_probs=17.7
Q ss_pred HHHHHHHHHcCCCHHHHHHHH
Q 008520 95 HMMLRFLKARKFDIEKTKQMW 115 (563)
Q Consensus 95 ~~LLRFLrArkfDvekA~k~l 115 (563)
....+-|++.++|++.|...|
T Consensus 19 ~~a~~AL~~~~~n~e~A~~~L 39 (40)
T 1z96_A 19 LEAAQALDAANGDLDVAASFL 39 (40)
T ss_dssp HHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHH
Confidence 466889999999999998754
No 40
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=27.43 E-value=1.6e+02 Score=21.88 Aligned_cols=38 Identities=13% Similarity=0.110 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Q 008520 72 QAVDAFRQALVLDELLPAKHDDHHMMLRFLKARKFDIEKTKQMWGDM 118 (563)
Q Consensus 72 ~aV~elR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~k~l~~~ 118 (563)
..|++|++. + ..|...-++=|++.++|+++|...|..+
T Consensus 11 ~~l~~L~~M----G-----F~d~~~n~~AL~~~~Gdv~~Ave~L~~~ 48 (54)
T 2dah_A 11 VQLEQLRSM----G-----FLNREANLQALIATGGDVDAAVEKLRQS 48 (54)
T ss_dssp HHHHHHHHH----T-----CCCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHc----C-----CCcHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 445666553 2 3443456899999999999999887653
No 41
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=27.39 E-value=1.2e+02 Score=21.83 Aligned_cols=37 Identities=8% Similarity=0.141 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHcCCCHHHHHHH
Q 008520 70 EMQAVDAFRQALVLDELLPAKHDDHHMMLRFLKARKFDIEKTKQM 114 (563)
Q Consensus 70 E~~aV~elR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~k~ 114 (563)
+.+.|.+|.+.-. .+|...-..||.+.+||++.|...
T Consensus 5 ~de~ia~F~~iTG--------~~d~~~A~~~Lea~nWDLe~Av~~ 41 (45)
T 3e21_A 5 REMILADFQACTG--------IENIDEAITLLEQNNWDLVAAING 41 (45)
T ss_dssp HHHHHHHHHHHHC--------CCCHHHHHHHHHHTTTCHHHHHTT
T ss_pred HHHHHHHHHHHHC--------CCCHHHHHHHHHHcCCcHHHHHHH
Confidence 4567888887432 344357788999999999998653
No 42
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=27.37 E-value=98 Score=27.04 Aligned_cols=72 Identities=17% Similarity=0.286 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCC--------------chHHHHHHHHHHhHHhHH----------------HHHHHHH
Q 008520 481 MAMAKRMAELEDKVKMLTMKPSTMP--------------PEKEEMLNAAVNRVSTLE----------------QELSATK 530 (563)
Q Consensus 481 ~~~~~r~~~lE~kv~~L~~KP~~mP--------------~EKEe~L~aa~~Rv~~~e----------------~~l~~tk 530 (563)
.+++.+|..||..+..|..+-.++= .+.++|.+.--.|+..|+ .++...+
T Consensus 5 ~~i~~~l~~Leae~q~L~~~E~qry~~eka~AE~A~~~La~~~~l~~~i~er~~~i~~~~~~~~yk~~y~~l~k~Y~~~~ 84 (119)
T 3etw_A 5 ASLVGELQALDAEYQNLANQEEARFNEERAQADAARQALAQNEQVYNELSQRAQRLQAEANTRFYKSQYQELASKYEDAL 84 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHH
Confidence 3455566666665555554433221 123444444445555554 3577889
Q ss_pred HHHHHHHHhHHHHHHHHHhhhh
Q 008520 531 KALENSLARQEELVAYIEKKKT 552 (563)
Q Consensus 531 kaL~~al~kQ~El~ayie~~~~ 552 (563)
|.|++-+.+|++++.+.|+-+.
T Consensus 85 keLd~~ik~qekiIdnFE~ik~ 106 (119)
T 3etw_A 85 KKLEAEMEQQKAVISDFEKIQA 106 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988775
No 43
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=26.65 E-value=1e+02 Score=22.03 Aligned_cols=36 Identities=22% Similarity=0.442 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhHHHHHHH
Q 008520 507 EKEEMLNAAVNRVSTLEQELSATKKALENSLARQEELVAY 546 (563)
Q Consensus 507 EKEe~L~aa~~Rv~~~e~~l~~tkkaL~~al~kQ~El~ay 546 (563)
-|||+|+. ++||| +|.++|++=+.+-=.||.||-+-
T Consensus 3 tk~~l~qk-I~kVd---rEI~Kte~kI~~lqkKlkeLee~ 38 (42)
T 2l5g_B 3 SKEELIQN-MDRVD---REITMVEQQISKLKKKQQQLEEE 38 (42)
T ss_dssp SSSHHHHH-HHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHH-HHHHH---HHHHHHHHHHHHHHHHHHHHHHh
Confidence 47787764 45554 78999998888888888887653
No 44
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=25.95 E-value=73 Score=26.80 Aligned_cols=46 Identities=17% Similarity=0.312 Sum_probs=38.2
Q ss_pred HHHHHHHhcCCCCCC--CchHHHHHHHHHHhHHhHHHHHHHHHHHHHHH
Q 008520 490 LEDKVKMLTMKPSTM--PPEKEEMLNAAVNRVSTLEQELSATKKALENS 536 (563)
Q Consensus 490 lE~kv~~L~~KP~~m--P~EKEe~L~aa~~Rv~~~e~~l~~tkkaL~~a 536 (563)
|+.+.++....|. | |.--|.-|+.+-.+|+.|+.+|-+-...|.++
T Consensus 41 l~Km~~vY~~nP~-~GD~~s~~~~L~e~~~kid~L~~el~K~q~~L~e~ 88 (98)
T 2ke4_A 41 LKKMKDVYEKTPQ-MGDPASLEPQIAETLSNIERLKLEVQKYEAWLAEA 88 (98)
T ss_dssp HHHHHHHHHHCGG-GCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777776 6 77779999999999999999999998888877
No 45
>2z5i_I TM, tropomyosin alpha-1 chain and general control protein GCN4; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Oryctolagus cuniculus} PDB: 2z5h_I 2g9j_A 1tmz_A
Probab=25.91 E-value=44 Score=23.69 Aligned_cols=20 Identities=35% Similarity=0.503 Sum_probs=17.3
Q ss_pred HHHHHhHHhHHHHHHHHHHH
Q 008520 513 NAAVNRVSTLEQELSATKKA 532 (563)
Q Consensus 513 ~aa~~Rv~~~e~~l~~tkka 532 (563)
.+|++|.+.+|+++..++|.
T Consensus 20 d~A~drAe~~E~~~k~~~~~ 39 (40)
T 2z5i_I 20 ENALDRAEQLENEVARLKKL 39 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHhhcc
Confidence 37899999999999988863
No 46
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=24.53 E-value=85 Score=25.00 Aligned_cols=47 Identities=13% Similarity=0.286 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHhcCCCCCCC---chHHHHHHHHHHhHHhHHHHHHHHHH
Q 008520 485 KRMAELEDKVKMLTMKPSTMP---PEKEEMLNAAVNRVSTLEQELSATKK 531 (563)
Q Consensus 485 ~r~~~lE~kv~~L~~KP~~mP---~EKEe~L~aa~~Rv~~~e~~l~~tkk 531 (563)
+|...|=+.+..|..--|.+| ..|-.+|..|++=|..|+.++..-+.
T Consensus 22 ~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~ 71 (80)
T 1hlo_A 22 KRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQ 71 (80)
T ss_dssp HHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666655433333 47999999999999999988765443
No 47
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=23.90 E-value=2.6e+02 Score=21.83 Aligned_cols=44 Identities=11% Similarity=0.017 Sum_probs=29.9
Q ss_pred CCCHHH--HHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Q 008520 65 CLNAEE--MQAVDAFRQALVLDELLPAKHDDHHMMLRFLKARKFDIEKTKQMWGD 117 (563)
Q Consensus 65 ~~d~eE--~~aV~elR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~k~l~~ 117 (563)
...+++ ..+|.+|++. + ..|...-++=|++.+.|+++|++.|..
T Consensus 12 ~~~pe~~y~~ql~qL~~M----G-----F~d~~an~~AL~at~Gnve~Ave~L~~ 57 (67)
T 2dna_A 12 LQAPEVRFSKEMECLQAM----G-----FVNYNANLQALIATDGDTNAAIYKLKS 57 (67)
T ss_dssp SCCHHHHTHHHHHHHHHH----T-----CCCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHc----C-----CCcHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 334444 4566666653 2 344456689999999999999887654
No 48
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=23.71 E-value=89 Score=23.77 Aligned_cols=43 Identities=26% Similarity=0.217 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHhcCCCCCCCc----hHHHHHHHHHHhHHhHHHHHH
Q 008520 485 KRMAELEDKVKMLTMKPSTMPP----EKEEMLNAAVNRVSTLEQELS 527 (563)
Q Consensus 485 ~r~~~lE~kv~~L~~KP~~mP~----EKEe~L~aa~~Rv~~~e~~l~ 527 (563)
+|+..|-+-+..|..--|.+|+ -|=+.|..|++=|..|+.-|.
T Consensus 12 ~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 12 NRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp HHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 6899999999999888777774 588999999999999987664
No 49
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=23.45 E-value=1.8e+02 Score=21.94 Aligned_cols=46 Identities=15% Similarity=0.253 Sum_probs=35.6
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 008520 65 CLNAEEMQAVDAFRQALVLDELLPAKHDDHHMMLRFLKARKFDIEKTKQMWGDML 119 (563)
Q Consensus 65 ~~d~eE~~aV~elR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~k~l~~~l 119 (563)
.+++++.+.|.+|.+.-. .+- .+-.++|...+||.++|.+.+.+..
T Consensus 2 ~ls~~q~~mv~~~s~~Tg--------mn~-~~s~~cL~~~~Wd~~~A~~~F~~l~ 47 (59)
T 1oai_A 2 TLSPEQQEMLQAFSTQSG--------MNL-EWSQKCLQDNNWDYTRSAQAFTHLK 47 (59)
T ss_dssp CCCHHHHHHHHHHHHHHC--------CCH-HHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHC--------CCH-HHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 367788888888887543 222 5788999999999999998876654
No 50
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=23.37 E-value=1.6e+02 Score=22.20 Aligned_cols=38 Identities=5% Similarity=-0.030 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Q 008520 71 MQAVDAFRQALVLDELLPAKHDDHHMMLRFLKARKFDIEKTKQMWGD 117 (563)
Q Consensus 71 ~~aV~elR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~k~l~~ 117 (563)
.+.|++|++. + ..|....++=|++.++|+++|.+.|..
T Consensus 18 ~~qi~~L~~M----G-----F~d~~~~~~AL~~~~gnve~Ave~L~~ 55 (58)
T 1wr1_B 18 EHQLRQLNDM----G-----FFDFDRNVAALRRSGGSVQGALDSLLN 55 (58)
T ss_dssp HHHHHHHHHH----T-----CCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHc----C-----CCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 4556666653 2 234457789999999999999987754
No 51
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=23.16 E-value=2.9e+02 Score=22.25 Aligned_cols=64 Identities=17% Similarity=0.312 Sum_probs=39.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhHHHHHH
Q 008520 477 GADYMAMAKRMAELEDKVKMLTMKPSTMPPEKEEMLNAAVNRVSTLEQELSATKKALENSLARQEELVA 545 (563)
Q Consensus 477 ~~~~~~~~~r~~~lE~kv~~L~~KP~~mP~EKEe~L~aa~~Rv~~~e~~l~~tkkaL~~al~kQ~El~a 545 (563)
.-++..+=.+|..||.++..|..+=+. |. +-.....++..|=.+|...+..|.++..|=+||-+
T Consensus 21 qrEle~le~~Ie~LE~~i~~le~~lad-p~----~y~~d~~~~~~l~~~l~~~e~eLe~~~erWeeLe~ 84 (89)
T 2lw1_A 21 QRELEQLPQLLEDLEAKLEALQTQVAD-AS----FFSQPHEQTQKVLADMAAAEQELEQAFERWEYLEA 84 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-TT----GGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC-cc----cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446778888899999998888754110 00 00011235556666666666677777777776643
No 52
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=22.88 E-value=1e+02 Score=25.92 Aligned_cols=45 Identities=18% Similarity=0.283 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCch----HHHHHHHHHHhHHhHHHHHHH
Q 008520 484 AKRMAELEDKVKMLTMKPSTMPPE----KEEMLNAAVNRVSTLEQELSA 528 (563)
Q Consensus 484 ~~r~~~lE~kv~~L~~KP~~mP~E----KEe~L~aa~~Rv~~~e~~l~~ 528 (563)
..||..|-+-++.|...-+.+|++ |=|.|..|++-|..|..-|..
T Consensus 34 r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~ 82 (97)
T 4aya_A 34 MSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDS 82 (97)
T ss_dssp HHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhc
Confidence 469999999999999888888887 789999999999998877653
No 53
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=22.28 E-value=1.9e+02 Score=24.19 Aligned_cols=57 Identities=12% Similarity=0.048 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhHHH
Q 008520 482 AMAKRMAELEDKVKMLTMKPSTMPPEKEEMLNAAVNRVSTLEQELSATKKALENSLARQEE 542 (563)
Q Consensus 482 ~~~~r~~~lE~kv~~L~~KP~~mP~EKEe~L~aa~~Rv~~~e~~l~~tkkaL~~al~kQ~E 542 (563)
..+.|...+|.++..+..+-. .+|+=+.+=-.|+..||.||+.+...|.++..+-++
T Consensus 20 ~a~drae~~e~~~k~~e~~~~----~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee 76 (101)
T 3u1c_A 20 NALDRAEQAEADKKAAEERSK----QLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLF 76 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666655544322 366666666688999999999998888888666544
No 54
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=22.23 E-value=2.1e+02 Score=23.79 Aligned_cols=60 Identities=17% Similarity=0.283 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhHHH
Q 008520 479 DYMAMAKRMAELEDKVKMLTMKPSTMPPEKEEMLNAAVNRVSTLEQELSATKKALENSLARQEE 542 (563)
Q Consensus 479 ~~~~~~~r~~~lE~kv~~L~~KP~~mP~EKEe~L~aa~~Rv~~~e~~l~~tkkaL~~al~kQ~E 542 (563)
.+.-+=+.+.+||..+..++ +|+.+-| +-|-.++.++...==.|++.=-.||+.+.+|.|
T Consensus 20 rL~~Yr~~IeelE~~L~s~s-~~~~~Tp---q~L~~~l~~~h~~FiaLAa~l~~lH~~V~~~Ke 79 (93)
T 3t98_B 20 QLQQYRQQIEELENHLATQA-NNSHITP---QDLSMAMQKIYQTFVALAAQLQSIHENVKVLKE 79 (93)
T ss_dssp HHHHHHHHHHHHHHHHSCHH-HHTTSCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcc-CCCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566788888888876 6666654 455555555555544555555555555555544
No 55
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=21.96 E-value=1.8e+02 Score=23.20 Aligned_cols=38 Identities=18% Similarity=0.176 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Q 008520 71 MQAVDAFRQALVLDELLPAKHDDHHMMLRFLKARKFDIEKTKQMWGD 117 (563)
Q Consensus 71 ~~aV~elR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~k~l~~ 117 (563)
.+.|++|++. + ..|....++=|++.++|+++|++.|..
T Consensus 30 e~qi~qL~eM----G-----F~dr~~~~~AL~~t~Gnve~Ave~L~~ 67 (74)
T 1vej_A 30 QQELEELKAL----G-----FANRDANLQALVATDGDIHAAIEMLLG 67 (74)
T ss_dssp HHHHHHHHHH----T-----CCCHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHHHHHc----C-----CCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 4556666653 2 234357789999999999999887643
No 56
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=21.37 E-value=3e+02 Score=32.33 Aligned_cols=62 Identities=21% Similarity=0.322 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHhc------CCCCCCCchH--HHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 008520 483 MAKRMAELEDKVKMLT------MKPSTMPPEK--EEMLNAAVNRVSTLEQELSATKKALENSLARQEELVAYI 547 (563)
Q Consensus 483 ~~~r~~~lE~kv~~L~------~KP~~mP~EK--Ee~L~aa~~Rv~~~e~~l~~tkkaL~~al~kQ~El~ayi 547 (563)
..+-..+||..+..|+ +.|+-+|++- -+-|+.++.+....|+| ...+|.+.+.||+.|..-.
T Consensus 819 r~~ek~~Le~l~~~iqtklrl~~r~~~~p~~gl~~~dL~~~W~~Le~ae~e---Re~~L~~el~Rqe~L~~L~ 888 (1010)
T 1g8x_A 819 KGQEVSELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQE---HAEALRIELKRQKKIAVLL 888 (1010)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTCCCCCCCTTCSHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccCHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 3444455555444444 5577788751 34588888776666665 4469999999998886433
No 57
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=20.75 E-value=3.2e+02 Score=21.74 Aligned_cols=64 Identities=19% Similarity=0.155 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHhcCCCCCCCc----hHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 008520 485 KRMAELEDKVKMLTMKPSTMPP----EKEEMLNAAVNRVSTLEQELSATKKALENSLARQEELVAYIE 548 (563)
Q Consensus 485 ~r~~~lE~kv~~L~~KP~~mP~----EKEe~L~aa~~Rv~~~e~~l~~tkkaL~~al~kQ~El~ayie 548 (563)
+|-.+|=..+..|..-=|.+|. -|=.+|..|++=|..|+.+-.....-.+.--.+|++|-+-|+
T Consensus 11 ~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 11 NRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4666676777777654444432 368999999999999998887766665555555566665554
No 58
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=20.11 E-value=1.7e+02 Score=23.18 Aligned_cols=43 Identities=16% Similarity=0.217 Sum_probs=32.1
Q ss_pred CHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Q 008520 67 NAEEMQAVDAFRQALVLDELLPAKHDDHHMMLRFLKARKFDIEKTKQMWGD 117 (563)
Q Consensus 67 d~eE~~aV~elR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~k~l~~ 117 (563)
.++=...|.++++. +|. ..+ .++.+.|..++.|+|.+...|-+
T Consensus 10 ~~~l~s~I~qV~DL------fPd-LG~-gfi~~~L~~y~~nvE~vin~LLE 52 (71)
T 2di0_A 10 GVELDSLISQVKDL------LPD-LGE-GFILACLEYYHYDPEQVINNILE 52 (71)
T ss_dssp SHHHHHHHHHHHHH------CCS-SCH-HHHHHHHHHTTTCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH------ccc-CCH-HHHHHHHHHhCCCHHHHHHHHHc
Confidence 44445677777765 454 444 58999999999999999888755
Done!