BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 008521
         (563 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9QXX8|NUFP1_MOUSE Nuclear fragile X mental retardation-interacting protein 1 OS=Mus
           musculus GN=Nufip1 PE=1 SV=1
          Length = 484

 Score = 39.7 bits (91), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 31/51 (60%), Gaps = 5/51 (9%)

Query: 270 KAIKFGLANQMNQPQEKKRKSLALTYTEQEVKQWCEERRKNYPTKANINKK 320
           K ++F   N M+ P  KK K      T +E+ +W EERRKNYPT ANI +K
Sbjct: 202 KIVQFHWRN-MHAPGMKKIK----LDTPEEIARWREERRKNYPTLANIERK 247


>sp|Q641W3|NUFP1_RAT Nuclear fragile X mental retardation-interacting protein 1
           OS=Rattus norvegicus GN=Nufip1 PE=2 SV=1
          Length = 486

 Score = 38.5 bits (88), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 31/51 (60%), Gaps = 5/51 (9%)

Query: 270 KAIKFGLANQMNQPQEKKRKSLALTYTEQEVKQWCEERRKNYPTKANINKK 320
           K ++F   N M+ P  KK K      T +++ +W EERRKNYPT ANI +K
Sbjct: 204 KIVQFHWRN-MHAPGMKKIK----LDTPEDIARWREERRKNYPTLANIERK 249


>sp|Q9UHK0|NUFP1_HUMAN Nuclear fragile X mental retardation-interacting protein 1 OS=Homo
           sapiens GN=NUFIP1 PE=1 SV=2
          Length = 495

 Score = 37.7 bits (86), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 23/48 (47%), Positives = 29/48 (60%), Gaps = 5/48 (10%)

Query: 270 KAIKFGLANQMNQPQEKKRKSLALTYTEQEVKQWCEERRKNYPTKANI 317
           K ++F   N M+ P  KK K      T +E+ +W EERRKNYPT ANI
Sbjct: 211 KIVQFHWRN-MHAPGMKKIK----LDTPEEIARWREERRKNYPTLANI 253



 Score = 32.3 bits (72), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 3/61 (4%)

Query: 399 RKDQFSKEQKLADKDSSNTSSFNKKK---PTLLQKLLSADVKRDKSHLLQTFRFMAINSF 455
           RK  F K      KD  N  +  + +   P LL+ LL+ D++ +++ +LQ  R++    F
Sbjct: 423 RKKSFEKTNPKRKKDYHNYQTLFEPRTHHPYLLEMLLAPDIRHERNVILQCVRYIIKKDF 482

Query: 456 F 456
           F
Sbjct: 483 F 483


>sp|Q9C5H4|Y3627_ARATH VHS domain-containing protein At3g16270 OS=Arabidopsis thaliana
           GN=At3g16270 PE=1 SV=1
          Length = 690

 Score = 36.2 bits (82), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 54/132 (40%), Gaps = 13/132 (9%)

Query: 10  NQTQSNSSTSTLPQMQAFRPNMLQNSVPMQPQTGIMNPQVPFPLSNSNMPATAPLMN--Q 67
           N  Q  SS+STLPQ     P+   +  P  P  GI+  Q P  + N+ +P      N  Q
Sbjct: 524 NSNQKGSSSSTLPQDLFAMPSTTSHQAPENPVGGILGSQNPGFIQNTMLPGGVMPFNFPQ 583

Query: 68  NNFMN---ASNPLLIAQSNHLGLPQ---LGHMFPVHGNFGNMPL----NVSQGQLLGPNL 117
              MN   AS PL  A    L   Q   LG+M      FGN+      NV      G N 
Sbjct: 584 GMMMNPAFASQPLNYAAMASLLAQQQQYLGNMSNFQ-QFGNLNAQGSGNVLSMGTSGGNQ 642

Query: 118 SNLPQQFNQNMG 129
           S LP  F  N G
Sbjct: 643 SALPDIFQPNFG 654


>sp|O42927|YBD3_SCHPO Uncharacterized protein C16C6.03c OS=Schizosaccharomyces pombe
           (strain 972 / ATCC 24843) GN=SPBC16C6.03c PE=4 SV=4
          Length = 207

 Score = 35.8 bits (81), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 14/34 (41%), Positives = 27/34 (79%), Gaps = 1/34 (2%)

Query: 287 KRKSLALTYTEQEVKQWCEERRKNYPTKANINKK 320
           KR+++++  T +E++ W +ER+KN+PT++NI  K
Sbjct: 93  KRRNISIN-TPEEIEAWIQERKKNWPTESNIRSK 125


>sp|P62500|T22D1_MOUSE TSC22 domain family protein 1 OS=Mus musculus GN=Tsc22d1 PE=2 SV=2
          Length = 1077

 Score = 33.9 bits (76), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 70/152 (46%), Gaps = 19/152 (12%)

Query: 19  STLPQMQAFRPNMLQNSVPMQPQT------GIMNPQVPFPLSNSNMPATAPLMNQNNFMN 72
           S+LPQ     P     +VP QPQ       G+++ Q+P   + S +P+ + +   N   +
Sbjct: 787 SSLPQQLVIAPQSTLVTVPPQPQGVETVAQGVVSQQLP---TGSPLPSASTISVTNQVSS 843

Query: 73  ASNPLLIAQSNHLGLPQLGHMFPVHGNFGNMPLNVSQGQLLGPNLSNLPQQFNQNMGFSN 132
           A+   + +   +L  PQ     P   N G++  +VSQ  L+  N+ NLP    Q +  S+
Sbjct: 844 AAPSGMPSVPTNLVPPQNIAQPPATQN-GSLVQSVSQSPLIATNI-NLP--LAQQIPLSS 899

Query: 133 GQMCLQSVNQLLSMQM------SNPCLFGNPQ 158
            Q   QS+ Q +  QM      + P L G PQ
Sbjct: 900 TQFSTQSLAQAIGSQMEDARRPAEPSLGGLPQ 931


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.312    0.129    0.367 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 219,448,736
Number of Sequences: 539616
Number of extensions: 10288248
Number of successful extensions: 41790
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 373
Number of HSP's that attempted gapping in prelim test: 39182
Number of HSP's gapped (non-prelim): 2115
length of query: 563
length of database: 191,569,459
effective HSP length: 123
effective length of query: 440
effective length of database: 125,196,691
effective search space: 55086544040
effective search space used: 55086544040
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 64 (29.3 bits)