Query 008521
Match_columns 563
No_of_seqs 101 out of 113
Neff 2.9
Searched_HMMs 29240
Date Mon Mar 25 05:30:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008521.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008521hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lvh_D LCB, clathrin light cha 78.3 2.2 7.5E-05 41.4 4.9 32 292-323 94-125 (205)
2 2cqe_A KIAA1064 protein; CCCH 77.1 0.83 2.9E-05 38.8 1.4 14 424-437 65-78 (98)
3 3lvg_D LCB, clathrin light cha 72.4 5.6 0.00019 38.1 5.8 30 292-321 79-108 (190)
4 1m9o_A Tristetraproline; Cys3H 71.1 2.2 7.4E-05 33.6 2.4 29 379-408 9-37 (77)
5 2d9n_A Cleavage and polyadenyl 65.2 2.8 9.5E-05 33.8 1.9 28 379-408 7-34 (77)
6 2rhk_C Cleavage and polyadenyl 60.8 2.9 0.0001 33.6 1.3 28 379-408 13-40 (72)
7 2cqe_A KIAA1064 protein; CCCH 55.2 5.7 0.00019 33.7 2.2 24 381-406 12-35 (98)
8 1m9o_A Tristetraproline; Cys3H 47.9 3.8 0.00013 32.1 0.0 27 381-408 49-75 (77)
9 3hym_A Anaphase-promoting comp 44.4 7.5 0.00026 27.6 1.0 23 287-309 3-25 (29)
10 2d9m_A Zinc finger CCCH-type d 39.9 8.2 0.00028 31.8 0.8 26 381-408 19-44 (69)
11 1xi4_J LCA, clathrin light cha 34.4 42 0.0014 27.6 4.1 18 292-309 3-20 (70)
12 1oy3_D Transcription factor in 25.0 23 0.00078 31.2 1.1 13 444-456 205-217 (282)
13 2b3g_B Cellular tumor antigen 24.8 30 0.001 24.1 1.4 15 292-306 10-24 (28)
14 3u1l_A PRE-mRNA-splicing facto 24.2 19 0.00066 34.8 0.5 29 378-408 66-94 (240)
15 2bze_A KIAA0252 protein; human 23.7 73 0.0025 28.9 4.2 29 295-323 116-147 (153)
16 2xpi_B Anaphase-promoting comp 22.4 22 0.00075 30.2 0.5 22 287-308 4-25 (81)
17 2e5s_A Otthump00000018578; ZF- 21.9 10 0.00035 32.3 -1.7 28 379-408 17-45 (98)
No 1
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 9.00A {Bos taurus}
Probab=78.27 E-value=2.2 Score=41.43 Aligned_cols=32 Identities=25% Similarity=0.467 Sum_probs=23.9
Q ss_pred ccccCHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 008521 292 ALTYTEQEVKQWCEERRKNYPTKANINKKLTE 323 (563)
Q Consensus 292 ~l~~t~eeI~~WreERrKNyPT~anIe~K~~e 323 (563)
.+..-||-|++|||||+|.-=-+.-.++++++
T Consensus 94 ~leeEPEsIRkWREEq~kRLeekDa~sekkk~ 125 (205)
T 3lvh_D 94 RLTQEPESIRKWREEQRKRLQELDAASKVMEQ 125 (205)
T ss_dssp TTTBSTTHHHHHHHHHTTTSTHHHHHHHHHHH
T ss_pred ccccCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788999999999999987655555554443
No 2
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=77.06 E-value=0.83 Score=38.82 Aligned_cols=14 Identities=36% Similarity=0.591 Sum_probs=8.4
Q ss_pred CchHHHHHHHHHHH
Q 008521 424 KPTLLQKLLSADVK 437 (563)
Q Consensus 424 rpTLLqKLL~~DIr 437 (563)
.+.+|.++|..|.+
T Consensus 65 ~~~~l~~~l~~~~~ 78 (98)
T 2cqe_A 65 TRELLDKMLADDAE 78 (98)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred chhHHhhhcchhhh
Confidence 45667777665543
No 3
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus}
Probab=72.41 E-value=5.6 Score=38.13 Aligned_cols=30 Identities=27% Similarity=0.480 Sum_probs=22.0
Q ss_pred ccccCHHHHHHHHHHHHhcCCChHHHHHHH
Q 008521 292 ALTYTEQEVKQWCEERRKNYPTKANINKKL 321 (563)
Q Consensus 292 ~l~~t~eeI~~WreERrKNyPT~anIe~K~ 321 (563)
.+..-||-|+.|||||++.-=-+.-.++++
T Consensus 79 ~LeEEPEsIRKWREEQkkRLEeRDA~Sekk 108 (190)
T 3lvg_D 79 RLTQEPESIRKWREEQRKRLQELDAASKVM 108 (190)
T ss_dssp TTTTSTTHHHHHHHHHTTTSTHHHHHHHHH
T ss_pred ccccCchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 367889999999999998875544444333
No 4
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=71.10 E-value=2.2 Score=33.58 Aligned_cols=29 Identities=24% Similarity=0.149 Sum_probs=22.7
Q ss_pred CCCCCCcceeccCCCCcccCCCCccchhhh
Q 008521 379 MPLNKRGRFQNNYDKRGRYKRKDQFSKEQK 408 (563)
Q Consensus 379 ~~~~K~CKF~nrGg~RgRcgRKcRFsh~~k 408 (563)
+-.++.|+||.+.| .|++|.+|+|+|...
T Consensus 9 ~~kt~~C~~f~~~G-~C~~G~~C~f~H~~~ 37 (77)
T 1m9o_A 9 RYKTELCRTYSESG-RCRYGAKCQFAHGLG 37 (77)
T ss_dssp CCCSCCCSGGGGTS-CCTTTTTCSSCSSSC
T ss_pred CccchhCHHhhhCC-CcCCCCCccCCCCCh
Confidence 34678999997544 567999999999875
No 5
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=65.22 E-value=2.8 Score=33.82 Aligned_cols=28 Identities=7% Similarity=-0.199 Sum_probs=19.1
Q ss_pred CCCCCCcceeccCCCCcccCCCCccchhhh
Q 008521 379 MPLNKRGRFQNNYDKRGRYKRKDQFSKEQK 408 (563)
Q Consensus 379 ~~~~K~CKF~nrGg~RgRcgRKcRFsh~~k 408 (563)
...+..||||.+|. |+.|..|+|+|+..
T Consensus 7 ~~k~~~C~~fl~G~--C~~G~~C~fsH~~~ 34 (77)
T 2d9n_A 7 GEKTVVCKHWLRGL--CKKGDQCEFLHEYD 34 (77)
T ss_dssp CCTTSBCHHHHTTC--CSCTTSSSSBCSCC
T ss_pred CCcceeCHhHccCc--CCCCCCCCCccccc
Confidence 34566788888844 44777788888754
No 6
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=60.84 E-value=2.9 Score=33.63 Aligned_cols=28 Identities=7% Similarity=-0.199 Sum_probs=21.8
Q ss_pred CCCCCCcceeccCCCCcccCCCCccchhhh
Q 008521 379 MPLNKRGRFQNNYDKRGRYKRKDQFSKEQK 408 (563)
Q Consensus 379 ~~~~K~CKF~nrGg~RgRcgRKcRFsh~~k 408 (563)
......||||.+|. |+.|..|+|+|+..
T Consensus 13 ~~k~~vCk~fl~G~--C~~G~~C~fsH~~~ 40 (72)
T 2rhk_C 13 GEKTVVCKHWLRGL--CKKGDQCEFLHEYD 40 (72)
T ss_dssp CCCCSBCHHHHTTC--CCCGGGSSSBCSCC
T ss_pred CCcCeeCHHHhcCC--CCCCCCCCCccccc
Confidence 45677999999955 45888899999854
No 7
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=55.16 E-value=5.7 Score=33.69 Aligned_cols=24 Identities=4% Similarity=-0.151 Sum_probs=15.2
Q ss_pred CCCCcceeccCCCCcccCCCCccchh
Q 008521 381 LNKRGRFQNNYDKRGRYKRKDQFSKE 406 (563)
Q Consensus 381 ~~K~CKF~nrGg~RgRcgRKcRFsh~ 406 (563)
.+..|+||.+|. |+.|.+|+|+|.
T Consensus 12 k~~lC~~f~~G~--C~~G~~C~f~H~ 35 (98)
T 2cqe_A 12 KRELCKFYITGF--CARAENCPYMHG 35 (98)
T ss_dssp CCSBCTTTTTTC--CSCSTTCSSBSS
T ss_pred CCccCcccccCc--CCCCCCCCCCCC
Confidence 455677775443 446777777776
No 8
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=47.94 E-value=3.8 Score=32.13 Aligned_cols=27 Identities=11% Similarity=0.026 Sum_probs=0.0
Q ss_pred CCCCcceeccCCCCcccCCCCccchhhh
Q 008521 381 LNKRGRFQNNYDKRGRYKRKDQFSKEQK 408 (563)
Q Consensus 381 ~~K~CKF~nrGg~RgRcgRKcRFsh~~k 408 (563)
.++.|++|...| .|++|.+|+|.|...
T Consensus 49 k~~~C~~f~~~G-~C~~G~~C~f~H~~~ 75 (77)
T 1m9o_A 49 KTELCHKFKLQG-RCPYGSRCHFIHNPT 75 (77)
T ss_dssp ----------------------------
T ss_pred cCCcccchhhCc-CCCCcCcCCCCCCCC
Confidence 467898665444 466999999999764
No 9
>3hym_A Anaphase-promoting complex subunit CDC26; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=44.36 E-value=7.5 Score=27.60 Aligned_cols=23 Identities=17% Similarity=0.387 Sum_probs=20.5
Q ss_pred cccccccccCHHHHHHHHHHHHh
Q 008521 287 KRKSLALTYTEQEVKQWCEERRK 309 (563)
Q Consensus 287 krks~~l~~t~eeI~~WreERrK 309 (563)
+|++..|.-+.+||++|-+.|+.
T Consensus 3 RRkPT~I~l~~eDi~e~E~~rke 25 (29)
T 3hym_A 3 RRKPTRLELKLDDIEEFENIRKD 25 (29)
T ss_dssp CCCCCCCCCCSGGGHHHHHHHHH
T ss_pred CCCCcEEEecHHHHHHHHHHHHH
Confidence 68899999999999999988874
No 10
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.90 E-value=8.2 Score=31.82 Aligned_cols=26 Identities=8% Similarity=-0.189 Sum_probs=20.6
Q ss_pred CCCCcceeccCCCCcccCCCCccchhhh
Q 008521 381 LNKRGRFQNNYDKRGRYKRKDQFSKEQK 408 (563)
Q Consensus 381 ~~K~CKF~nrGg~RgRcgRKcRFsh~~k 408 (563)
..+-|+.|.+| .|++|.+|.|+|-..
T Consensus 19 k~~LC~~~~~G--~C~~G~~C~FAHG~~ 44 (69)
T 2d9m_A 19 YFSICDRYMNG--TCPEGNSCKFAHGNA 44 (69)
T ss_dssp CCSBCHHHHHS--CCSSCSSCSSBSSHH
T ss_pred CcccCcccCcC--CCCCCCccCCcCCHH
Confidence 44889999666 567999999998753
No 11
>1xi4_J LCA, clathrin light chain A; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 3iyv_J
Probab=34.42 E-value=42 Score=27.60 Aligned_cols=18 Identities=22% Similarity=0.589 Sum_probs=14.3
Q ss_pred ccccCHHHHHHHHHHHHh
Q 008521 292 ALTYTEQEVKQWCEERRK 309 (563)
Q Consensus 292 ~l~~t~eeI~~WreERrK 309 (563)
++-.-|+-|+.||++|.+
T Consensus 3 ~~~~EpE~Ir~WRE~~~~ 20 (70)
T 1xi4_J 3 RLQSEPESIRKWREEQTE 20 (70)
T ss_pred CcccCcHHHHHHHHHHHH
Confidence 344567899999999975
No 12
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=24.99 E-value=23 Score=31.18 Aligned_cols=13 Identities=0% Similarity=-0.095 Sum_probs=9.2
Q ss_pred HHHHHHHHHcCCC
Q 008521 444 LQTFRFMAINSFF 456 (563)
Q Consensus 444 LQcIRFLVeNnFF 456 (563)
+.+|+||++++.=
T Consensus 205 ~~~v~~Ll~~gad 217 (282)
T 1oy3_D 205 ASVLELLLKAGAD 217 (282)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHHcCCC
Confidence 4678888887643
No 13
>2b3g_B Cellular tumor antigen P53; OB-fold, ssDNA mimicry, replication; 1.60A {Homo sapiens}
Probab=24.79 E-value=30 Score=24.14 Aligned_cols=15 Identities=27% Similarity=0.702 Sum_probs=12.7
Q ss_pred ccccCHHHHHHHHHH
Q 008521 292 ALTYTEQEVKQWCEE 306 (563)
Q Consensus 292 ~l~~t~eeI~~WreE 306 (563)
+++-+|.||.+|..+
T Consensus 10 dlmlspddi~qw~s~ 24 (28)
T 2b3g_B 10 DLMLSPDDIEQWFTE 24 (28)
T ss_dssp GGGCCHHHHHHHHHC
T ss_pred hhhcChHHHHHHhhc
Confidence 478899999999864
No 14
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=24.24 E-value=19 Score=34.79 Aligned_cols=29 Identities=7% Similarity=-0.287 Sum_probs=22.6
Q ss_pred CCCCCCCcceeccCCCCcccCCCCccchhhh
Q 008521 378 TMPLNKRGRFQNNYDKRGRYKRKDQFSKEQK 408 (563)
Q Consensus 378 k~~~~K~CKF~nrGg~RgRcgRKcRFsh~~k 408 (563)
+...+..|-||.+|.| ++|..|.+.|+.+
T Consensus 66 ~~~~~~~C~ffakG~C--~~G~~C~y~H~lP 94 (240)
T 3u1l_A 66 NDGQLFFCLFFAKGMC--CLGPKCEYLHHIP 94 (240)
T ss_dssp HTTCCSBCHHHHTTCC--SCGGGCSSBBSCC
T ss_pred cCCCCeEcCccccCCC--CCCCCCCccCCCC
Confidence 3456779999999665 5999999988743
No 15
>2bze_A KIAA0252 protein; human RTF1 PLUS3 domain, transcription, elongation, PAF1 complex, histone H3 methylation, H2B ubiquitination, CDC73, LEO1, CTR9; NMR {Homo sapiens} SCOP: b.34.21.1
Probab=23.72 E-value=73 Score=28.87 Aligned_cols=29 Identities=38% Similarity=0.518 Sum_probs=25.2
Q ss_pred cCHHHHHHHHHHHHh---cCCChHHHHHHHHH
Q 008521 295 YTEQEVKQWCEERRK---NYPTKANINKKLTE 323 (563)
Q Consensus 295 ~t~eeI~~WreERrK---NyPT~anIe~K~~e 323 (563)
-|++|..+|++.=++ .+||..-|++|.++
T Consensus 116 fte~Ef~~w~~~~~~~~~~~PT~~~v~~K~~~ 147 (153)
T 2bze_A 116 FTESEFMKWKEAMFSAGMQLPTLDEINKKELS 147 (153)
T ss_dssp CCHHHHHHHHHHHHHHTCCCCBHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 368999999988777 79999999999865
No 16
>2xpi_B Anaphase-promoting complex subunit HCN1 HCN1/CDC2 cyclosome/APC complex protein HCN1,...; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=22.36 E-value=22 Score=30.23 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=19.0
Q ss_pred cccccccccCHHHHHHHHHHHH
Q 008521 287 KRKSLALTYTEQEVKQWCEERR 308 (563)
Q Consensus 287 krks~~l~~t~eeI~~WreERr 308 (563)
+|++..|.-|+|||.+|-++|-
T Consensus 4 RR~PTaI~iT~EDI~ayEd~rl 25 (81)
T 2xpi_B 4 RRNPTAIQITAEDVLAYDEEKL 25 (81)
T ss_dssp CCCCCCCCCCHHHHHHHHCCC-
T ss_pred ccCCceEEeCHHHHHHHHHHHH
Confidence 6889999999999999987753
No 17
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.86 E-value=10 Score=32.30 Aligned_cols=28 Identities=7% Similarity=-0.121 Sum_probs=20.2
Q ss_pred CCCCCCcceeccCCCCcccCC-CCccchhhh
Q 008521 379 MPLNKRGRFQNNYDKRGRYKR-KDQFSKEQK 408 (563)
Q Consensus 379 ~~~~K~CKF~nrGg~RgRcgR-KcRFsh~~k 408 (563)
.+....||||.+|.| ..|. .|+|+|...
T Consensus 17 ~~k~~VCr~FlrG~C--~rgd~~C~FsH~~~ 45 (98)
T 2e5s_A 17 TDKLEVCREFQRGNC--ARGETDCRFAHPAD 45 (98)
T ss_dssp SSEEEBCSHHHHTCC--SSHHHHCSSBCCSS
T ss_pred hhhhhhhHHHhcCcC--CCCCCCCCCcCCch
Confidence 345568999999543 3555 599999975
Done!