Query 008522
Match_columns 563
No_of_seqs 57 out of 59
Neff 3.4
Searched_HMMs 46136
Date Thu Mar 28 13:13:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008522.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008522hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00261 Tropomyosin: Tropomyo 98.9 4.8E-07 1E-11 88.9 21.9 231 247-523 2-232 (237)
2 PRK02224 chromosome segregatio 98.7 0.00079 1.7E-08 76.2 42.2 44 229-272 262-305 (880)
3 TIGR02169 SMC_prok_A chromosom 98.6 0.00037 8E-09 79.5 36.1 55 209-263 151-208 (1164)
4 PRK02224 chromosome segregatio 98.6 0.00045 9.8E-09 78.2 36.6 292 217-532 189-504 (880)
5 TIGR02168 SMC_prok_B chromosom 98.4 0.00037 8E-09 79.0 30.6 18 502-519 965-982 (1179)
6 TIGR00606 rad50 rad50. This fa 98.4 0.0057 1.2E-07 73.3 40.2 373 149-535 633-1024(1311)
7 TIGR02169 SMC_prok_A chromosom 98.3 0.0037 8E-08 71.6 35.1 83 335-417 295-377 (1164)
8 TIGR02168 SMC_prok_B chromosom 98.3 0.018 4E-07 65.6 40.9 42 494-535 985-1026(1179)
9 COG1196 Smc Chromosome segrega 98.2 0.0016 3.5E-08 77.0 31.7 79 241-319 690-768 (1163)
10 KOG0161 Myosin class II heavy 98.2 0.018 3.9E-07 71.7 40.8 265 283-560 1507-1862(1930)
11 PF00261 Tropomyosin: Tropomyo 98.1 0.00026 5.6E-09 69.9 19.3 138 278-419 82-219 (237)
12 TIGR00606 rad50 rad50. This fa 98.1 0.041 8.9E-07 66.2 40.9 110 241-354 541-652 (1311)
13 KOG0161 Myosin class II heavy 98.1 0.061 1.3E-06 67.3 42.2 282 212-513 1105-1425(1930)
14 COG1196 Smc Chromosome segrega 98.0 0.024 5.2E-07 67.4 34.7 312 233-555 703-1027(1163)
15 PHA02562 46 endonuclease subun 97.9 0.0089 1.9E-07 64.2 25.7 123 425-547 299-430 (562)
16 KOG4674 Uncharacterized conser 97.7 0.25 5.4E-06 61.6 37.5 311 226-558 655-1021(1822)
17 KOG0971 Microtubule-associated 97.5 0.05 1.1E-06 63.6 27.0 218 338-560 273-551 (1243)
18 PF10174 Cast: RIM-binding pro 97.4 0.41 9E-06 55.7 38.0 315 214-547 230-607 (775)
19 PRK04778 septation ring format 97.3 0.4 8.6E-06 53.3 30.2 114 333-448 255-371 (569)
20 KOG0976 Rho/Rac1-interacting s 97.3 0.15 3.3E-06 59.3 26.7 271 260-554 34-336 (1265)
21 KOG4674 Uncharacterized conser 97.3 0.97 2.1E-05 56.7 39.2 294 217-535 691-1037(1822)
22 PRK04863 mukB cell division pr 97.2 0.72 1.6E-05 57.1 32.6 63 204-266 272-334 (1486)
23 PRK03918 chromosome segregatio 97.1 0.74 1.6E-05 52.5 41.0 12 105-116 174-185 (880)
24 PF01576 Myosin_tail_1: Myosin 97.1 0.00013 2.9E-09 83.9 0.0 203 342-557 575-801 (859)
25 PF12718 Tropomyosin_1: Tropom 97.0 0.014 3E-07 54.6 13.0 128 379-520 3-140 (143)
26 KOG0996 Structural maintenance 97.0 1.3 2.9E-05 53.5 32.9 282 245-555 287-588 (1293)
27 PF10174 Cast: RIM-binding pro 96.9 1.5 3.2E-05 51.3 38.2 145 332-476 299-456 (775)
28 PF12128 DUF3584: Protein of u 96.8 1.9 4E-05 52.2 38.4 203 210-415 415-674 (1201)
29 PF00038 Filament: Intermediat 96.8 0.46 1E-05 47.9 22.1 52 336-387 56-114 (312)
30 PLN02939 transferase, transfer 96.6 0.067 1.4E-06 63.2 17.1 189 335-554 164-368 (977)
31 PF00038 Filament: Intermediat 96.6 0.96 2.1E-05 45.6 24.0 244 230-512 52-307 (312)
32 PF01576 Myosin_tail_1: Myosin 96.6 0.00054 1.2E-08 79.1 0.0 202 336-549 365-593 (859)
33 KOG1003 Actin filament-coating 96.6 0.22 4.7E-06 49.8 17.7 143 337-521 56-198 (205)
34 PF07888 CALCOCO1: Calcium bin 96.4 2.3 5E-05 48.1 32.3 142 375-526 282-434 (546)
35 KOG0933 Structural maintenance 96.4 2.3 5E-05 51.0 27.2 241 189-478 646-889 (1174)
36 KOG0978 E3 ubiquitin ligase in 96.3 3.3 7.3E-05 48.0 31.4 219 272-514 376-620 (698)
37 KOG0996 Structural maintenance 96.2 3.5 7.6E-05 50.2 27.8 198 289-521 385-596 (1293)
38 PF05557 MAD: Mitotic checkpoi 96.2 0.0013 2.9E-08 74.1 0.0 178 372-560 226-425 (722)
39 KOG0933 Structural maintenance 96.1 4.6 0.0001 48.6 30.9 202 335-559 295-504 (1174)
40 PRK03918 chromosome segregatio 96.1 3.6 7.8E-05 47.1 40.0 12 73-84 133-144 (880)
41 PF07888 CALCOCO1: Calcium bin 96.0 3.8 8.2E-05 46.4 30.4 77 228-304 160-236 (546)
42 PHA02562 46 endonuclease subun 96.0 1.9 4E-05 46.7 22.7 85 334-418 299-386 (562)
43 KOG1003 Actin filament-coating 95.9 0.72 1.6E-05 46.2 17.7 174 241-418 6-186 (205)
44 KOG0971 Microtubule-associated 95.9 2.7 5.9E-05 50.1 24.5 66 370-443 411-486 (1243)
45 KOG0612 Rho-associated, coiled 95.9 4.6 0.0001 49.3 26.6 101 380-480 543-650 (1317)
46 KOG0995 Centromere-associated 95.6 5.4 0.00012 45.4 31.4 317 223-560 204-547 (581)
47 PF06160 EzrA: Septation ring 95.6 5.3 0.00011 44.8 31.1 118 333-452 251-371 (560)
48 PRK04863 mukB cell division pr 95.6 5.2 0.00011 50.0 26.5 66 458-525 395-465 (1486)
49 PF09726 Macoilin: Transmembra 95.6 0.58 1.3E-05 53.9 17.5 138 291-435 428-611 (697)
50 COG5185 HEC1 Protein involved 95.5 5.7 0.00012 44.7 27.8 327 209-560 218-588 (622)
51 PF12718 Tropomyosin_1: Tropom 95.4 0.85 1.8E-05 42.8 15.4 35 333-367 34-68 (143)
52 KOG0977 Nuclear envelope prote 95.3 3.7 8E-05 46.5 22.3 310 147-514 48-389 (546)
53 KOG0250 DNA repair protein RAD 95.3 2 4.4E-05 51.6 21.1 343 41-434 74-445 (1074)
54 PF14662 CCDC155: Coiled-coil 95.1 3.4 7.4E-05 41.3 18.9 165 370-559 9-190 (193)
55 PF10473 CENP-F_leu_zip: Leuci 95.1 0.52 1.1E-05 44.6 12.7 96 411-520 10-105 (140)
56 KOG0994 Extracellular matrix g 94.6 16 0.00034 45.2 27.3 175 217-395 1453-1645(1758)
57 KOG0946 ER-Golgi vesicle-tethe 94.6 0.81 1.8E-05 53.6 15.1 129 401-530 727-882 (970)
58 PF12128 DUF3584: Protein of u 94.5 16 0.00035 44.5 36.5 66 492-557 813-878 (1201)
59 PF14915 CCDC144C: CCDC144C pr 94.4 8.3 0.00018 41.0 21.6 219 244-515 75-298 (305)
60 PRK11637 AmiB activator; Provi 94.2 9.7 0.00021 40.9 23.3 83 305-398 43-125 (428)
61 PF09726 Macoilin: Transmembra 93.7 7.4 0.00016 45.2 20.5 211 344-561 421-656 (697)
62 PF14662 CCDC155: Coiled-coil 93.7 6.3 0.00014 39.5 17.2 136 336-482 38-187 (193)
63 PF14915 CCDC144C: CCDC144C pr 93.5 12 0.00026 39.8 20.9 80 459-552 192-271 (305)
64 PF05701 WEMBL: Weak chloropla 93.5 15 0.00033 40.9 36.0 210 208-453 197-414 (522)
65 KOG0995 Centromere-associated 93.3 19 0.0004 41.3 25.5 109 368-479 445-572 (581)
66 PF09787 Golgin_A5: Golgin sub 92.9 18 0.00039 40.2 22.5 111 348-475 221-335 (511)
67 PF05701 WEMBL: Weak chloropla 92.9 19 0.00041 40.2 28.5 177 305-481 238-421 (522)
68 PF10473 CENP-F_leu_zip: Leuci 92.9 4.8 0.0001 38.3 14.5 102 326-442 10-111 (140)
69 KOG0994 Extracellular matrix g 92.6 34 0.00074 42.5 29.7 97 218-320 1334-1461(1758)
70 PRK09039 hypothetical protein; 92.4 6.8 0.00015 41.5 16.5 59 339-397 44-102 (343)
71 PF05911 DUF869: Plant protein 92.3 15 0.00033 43.2 20.5 32 222-253 441-472 (769)
72 PRK11281 hypothetical protein; 91.9 9.7 0.00021 46.5 18.9 24 493-516 283-306 (1113)
73 PF05557 MAD: Mitotic checkpoi 91.9 0.046 1E-06 62.0 0.0 100 453-557 357-463 (722)
74 PF05010 TACC: Transforming ac 91.9 15 0.00033 36.9 21.1 179 343-541 11-193 (207)
75 KOG0018 Structural maintenance 91.3 14 0.0003 44.9 18.9 147 334-482 676-836 (1141)
76 KOG0946 ER-Golgi vesicle-tethe 91.1 23 0.0005 42.3 20.0 72 280-351 645-716 (970)
77 PRK01156 chromosome segregatio 90.9 38 0.00082 39.6 40.8 20 499-518 692-711 (895)
78 TIGR02977 phageshock_pspA phag 90.7 18 0.0004 35.7 17.8 146 333-486 24-185 (219)
79 PF15070 GOLGA2L5: Putative go 90.3 40 0.00088 38.9 23.3 15 544-558 247-261 (617)
80 COG1579 Zn-ribbon protein, pos 89.9 19 0.00041 37.1 16.2 131 427-557 19-151 (239)
81 PRK01156 chromosome segregatio 89.1 52 0.0011 38.5 41.7 26 146-171 195-220 (895)
82 COG1579 Zn-ribbon protein, pos 89.1 19 0.0004 37.1 15.5 130 286-419 50-186 (239)
83 KOG0250 DNA repair protein RAD 89.0 66 0.0014 39.5 27.4 39 490-528 403-441 (1074)
84 PRK11281 hypothetical protein; 88.8 69 0.0015 39.5 25.3 189 244-455 126-329 (1113)
85 PRK10698 phage shock protein P 88.4 29 0.00064 34.8 17.8 146 333-486 24-185 (222)
86 PF14073 Cep57_CLD: Centrosome 88.0 15 0.00033 36.5 13.5 46 469-525 112-157 (178)
87 PF15294 Leu_zip: Leucine zipp 87.9 19 0.0004 38.0 14.8 160 394-558 49-239 (278)
88 PF13851 GAS: Growth-arrest sp 87.7 31 0.00066 34.2 16.8 84 306-389 27-120 (201)
89 PF05483 SCP-1: Synaptonemal c 87.3 70 0.0015 37.8 30.4 146 368-523 505-650 (786)
90 PRK04778 septation ring format 86.6 61 0.0013 36.5 30.8 89 236-331 102-190 (569)
91 PRK10929 putative mechanosensi 86.6 92 0.002 38.5 22.6 62 453-514 208-284 (1109)
92 KOG0977 Nuclear envelope prote 86.4 68 0.0015 36.8 23.2 20 267-288 58-77 (546)
93 PF07926 TPR_MLP1_2: TPR/MLP1/ 85.5 27 0.00058 32.1 13.1 83 378-474 33-119 (132)
94 PF08317 Spc7: Spc7 kinetochor 85.2 43 0.00094 35.1 16.0 133 252-396 125-264 (325)
95 PF15619 Lebercilin: Ciliary p 84.2 30 0.00064 34.3 13.5 98 387-493 47-144 (194)
96 KOG0963 Transcription factor/C 84.0 93 0.002 36.3 31.1 236 143-483 17-265 (629)
97 PRK09039 hypothetical protein; 84.0 30 0.00064 36.8 14.4 48 332-379 135-182 (343)
98 PF13851 GAS: Growth-arrest sp 84.0 47 0.001 32.9 15.6 136 377-523 28-171 (201)
99 KOG4438 Centromere-associated 83.6 81 0.0018 35.3 24.8 206 332-561 171-420 (446)
100 PF05622 HOOK: HOOK protein; 82.4 0.41 8.8E-06 54.5 0.0 145 368-521 362-528 (713)
101 KOG0963 Transcription factor/C 82.3 1.1E+02 0.0023 35.8 32.7 74 92-173 11-84 (629)
102 KOG0804 Cytoplasmic Zn-finger 81.9 17 0.00036 40.8 11.7 74 455-535 370-443 (493)
103 TIGR03007 pepcterm_ChnLen poly 81.8 46 0.001 36.0 15.1 131 334-481 247-383 (498)
104 COG1842 PspA Phage shock prote 80.7 69 0.0015 32.6 17.5 144 333-484 24-183 (225)
105 PF06008 Laminin_I: Laminin Do 80.1 70 0.0015 32.3 20.7 162 230-400 50-216 (264)
106 TIGR01005 eps_transp_fam exopo 78.2 1.3E+02 0.0029 34.6 17.9 42 240-281 181-222 (754)
107 PF09728 Taxilin: Myosin-like 77.3 1E+02 0.0022 32.6 26.2 196 277-523 110-306 (309)
108 KOG0980 Actin-binding protein 77.1 1.8E+02 0.004 35.4 20.7 83 464-546 463-549 (980)
109 KOG1029 Endocytic adaptor prot 76.4 1.9E+02 0.0041 35.2 25.5 78 334-418 444-521 (1118)
110 PF10168 Nup88: Nuclear pore c 74.9 1.5E+02 0.0033 34.9 17.4 117 207-327 538-657 (717)
111 PF05266 DUF724: Protein of un 74.8 51 0.0011 32.7 11.8 110 286-396 77-186 (190)
112 KOG1899 LAR transmembrane tyro 74.3 16 0.00034 42.6 9.2 113 333-445 103-215 (861)
113 TIGR01005 eps_transp_fam exopo 74.0 1.3E+02 0.0027 34.8 16.3 53 341-393 237-305 (754)
114 KOG0612 Rho-associated, coiled 73.8 2.5E+02 0.0055 35.4 32.9 237 229-487 519-769 (1317)
115 PF09728 Taxilin: Myosin-like 73.3 1.3E+02 0.0028 31.8 25.4 149 392-560 123-291 (309)
116 PF10168 Nup88: Nuclear pore c 72.9 91 0.002 36.7 15.0 101 457-560 597-711 (717)
117 PF10267 Tmemb_cc2: Predicted 71.2 27 0.00058 38.4 9.7 53 425-480 258-318 (395)
118 PF05622 HOOK: HOOK protein; 70.9 2.1 4.7E-05 48.8 1.6 50 459-508 362-411 (713)
119 PF08614 ATG16: Autophagy prot 70.4 20 0.00044 34.7 7.9 114 286-417 72-185 (194)
120 PF11559 ADIP: Afadin- and alp 70.2 51 0.0011 30.5 10.2 90 457-560 56-145 (151)
121 PRK10884 SH3 domain-containing 70.2 28 0.00062 34.8 9.0 78 335-436 87-164 (206)
122 smart00787 Spc7 Spc7 kinetocho 70.1 84 0.0018 33.4 12.8 133 253-397 121-260 (312)
123 TIGR03185 DNA_S_dndD DNA sulfu 69.7 2.1E+02 0.0045 32.7 25.6 18 461-478 399-416 (650)
124 PF08647 BRE1: BRE1 E3 ubiquit 68.9 30 0.00065 30.5 7.9 75 229-314 7-81 (96)
125 PF05911 DUF869: Plant protein 68.0 2.7E+02 0.0059 33.4 22.1 47 335-381 618-664 (769)
126 PF04156 IncA: IncA protein; 67.8 1.1E+02 0.0024 28.9 12.2 73 335-414 110-182 (191)
127 PF05010 TACC: Transforming ac 67.5 1.5E+02 0.0032 30.1 19.0 163 371-557 4-170 (207)
128 TIGR00634 recN DNA repair prot 67.2 2.2E+02 0.0048 32.0 20.1 42 509-550 346-388 (563)
129 KOG4809 Rab6 GTPase-interactin 67.1 97 0.0021 35.9 13.1 133 300-508 319-458 (654)
130 TIGR03007 pepcterm_ChnLen poly 67.1 1.9E+02 0.0042 31.4 18.0 22 424-445 274-295 (498)
131 PRK10884 SH3 domain-containing 66.8 43 0.00093 33.6 9.4 34 370-403 133-166 (206)
132 PF06818 Fez1: Fez1; InterPro 66.7 1.5E+02 0.0033 30.1 14.0 152 342-561 11-162 (202)
133 PF11559 ADIP: Afadin- and alp 66.6 83 0.0018 29.1 10.7 67 333-399 65-131 (151)
134 PF04012 PspA_IM30: PspA/IM30 66.2 1.3E+02 0.0029 29.2 20.0 162 333-525 23-188 (221)
135 TIGR03017 EpsF chain length de 65.6 1.9E+02 0.0041 30.8 17.2 21 332-352 280-300 (444)
136 PF04849 HAP1_N: HAP1 N-termin 65.4 2E+02 0.0043 31.0 15.6 56 490-545 222-277 (306)
137 TIGR02680 conserved hypothetic 65.3 3.7E+02 0.008 34.0 21.9 135 284-418 789-935 (1353)
138 PF15397 DUF4618: Domain of un 64.8 1.9E+02 0.0041 30.4 15.2 151 393-559 9-167 (258)
139 COG0419 SbcC ATPase involved i 64.7 3E+02 0.0066 32.8 41.3 73 52-124 118-195 (908)
140 PF12325 TMF_TATA_bd: TATA ele 64.5 94 0.002 29.0 10.5 85 457-541 20-110 (120)
141 PF07111 HCR: Alpha helical co 64.2 3.1E+02 0.0068 32.7 29.3 191 333-524 161-388 (739)
142 TIGR03185 DNA_S_dndD DNA sulfu 64.1 2.7E+02 0.0058 31.9 30.0 80 333-417 390-469 (650)
143 KOG0249 LAR-interacting protei 63.9 2.2E+02 0.0048 34.2 15.4 67 380-446 67-133 (916)
144 PF08614 ATG16: Autophagy prot 63.9 42 0.00092 32.5 8.6 60 485-554 134-193 (194)
145 COG0419 SbcC ATPase involved i 63.6 3.2E+02 0.0069 32.6 40.2 43 256-298 399-441 (908)
146 TIGR03017 EpsF chain length de 63.5 2.1E+02 0.0045 30.5 17.1 20 424-443 281-300 (444)
147 PF09730 BicD: Microtubule-ass 63.3 2.7E+02 0.0059 33.2 16.2 158 297-465 22-182 (717)
148 PF04156 IncA: IncA protein; 63.1 1.4E+02 0.003 28.3 13.2 51 367-417 100-150 (191)
149 TIGR01010 BexC_CtrB_KpsE polys 61.8 2.1E+02 0.0046 30.0 14.6 101 251-360 168-268 (362)
150 PF05278 PEARLI-4: Arabidopsis 60.0 1E+02 0.0023 32.5 11.1 56 333-388 206-261 (269)
151 KOG0804 Cytoplasmic Zn-finger 59.8 83 0.0018 35.6 10.8 74 378-451 363-436 (493)
152 PF08317 Spc7: Spc7 kinetochor 59.2 2.4E+02 0.0051 29.7 22.2 31 452-482 208-238 (325)
153 KOG3850 Predicted membrane pro 58.9 1.1E+02 0.0023 34.2 11.2 52 426-480 307-366 (455)
154 smart00787 Spc7 Spc7 kinetocho 58.4 1.7E+02 0.0037 31.1 12.5 112 231-349 164-286 (312)
155 PRK09841 cryptic autophosphory 56.1 3.8E+02 0.0083 31.2 15.8 107 238-359 252-364 (726)
156 PF14197 Cep57_CLD_2: Centroso 56.0 81 0.0017 26.7 7.8 62 334-416 5-66 (69)
157 PRK11085 magnesium/nickel/coba 55.0 33 0.00073 36.2 6.7 76 96-182 128-203 (316)
158 KOG0239 Kinesin (KAR3 subfamil 54.8 4.2E+02 0.0091 31.2 16.0 33 462-509 282-314 (670)
159 TIGR01843 type_I_hlyD type I s 54.4 2.7E+02 0.0058 28.9 15.9 19 462-480 248-266 (423)
160 TIGR00634 recN DNA repair prot 54.1 3.7E+02 0.0079 30.3 19.4 95 305-399 269-369 (563)
161 PF06008 Laminin_I: Laminin Do 54.0 2.5E+02 0.0054 28.4 18.7 35 500-535 183-217 (264)
162 PHA02414 hypothetical protein 53.4 35 0.00075 31.5 5.6 75 376-474 4-78 (111)
163 PF15070 GOLGA2L5: Putative go 52.1 4.5E+02 0.0097 30.7 34.5 142 267-419 167-315 (617)
164 KOG0239 Kinesin (KAR3 subfamil 47.5 3.7E+02 0.0081 31.6 14.0 76 485-560 231-312 (670)
165 PF15619 Lebercilin: Ciliary p 47.3 3E+02 0.0066 27.4 18.4 85 275-363 59-147 (194)
166 PF12325 TMF_TATA_bd: TATA ele 47.2 2.4E+02 0.0053 26.3 12.2 97 365-472 19-115 (120)
167 PRK10929 putative mechanosensi 45.4 7.2E+02 0.016 31.2 26.6 52 400-458 261-312 (1109)
168 PF06156 DUF972: Protein of un 45.2 34 0.00074 31.2 4.3 53 457-516 5-57 (107)
169 PLN02939 transferase, transfer 44.9 7E+02 0.015 31.0 19.2 87 424-524 299-398 (977)
170 PF03962 Mnd1: Mnd1 family; I 44.5 1.9E+02 0.004 28.5 9.6 73 332-419 60-132 (188)
171 PF02994 Transposase_22: L1 tr 42.4 18 0.0004 38.8 2.5 54 469-522 139-192 (370)
172 PF05266 DUF724: Protein of un 41.9 3.6E+02 0.0079 26.8 11.2 50 336-385 98-147 (190)
173 PF07989 Microtub_assoc: Micro 41.1 1E+02 0.0022 26.5 6.3 52 367-418 5-57 (75)
174 PF04508 Pox_A_type_inc: Viral 40.4 26 0.00057 24.5 2.2 20 502-521 1-20 (23)
175 PF04582 Reo_sigmaC: Reovirus 40.3 29 0.00063 37.3 3.6 54 366-419 32-85 (326)
176 PF12001 DUF3496: Domain of un 39.8 1.8E+02 0.0039 27.1 8.1 78 463-561 3-81 (111)
177 PRK09343 prefoldin subunit bet 39.7 2.2E+02 0.0047 26.2 8.6 108 336-447 2-114 (121)
178 PF07106 TBPIP: Tat binding pr 39.1 1.4E+02 0.003 28.3 7.5 19 401-419 120-138 (169)
179 PF04012 PspA_IM30: PspA/IM30 38.6 3.8E+02 0.0083 26.1 15.3 16 277-292 8-23 (221)
180 PF12329 TMF_DNA_bd: TATA elem 38.2 2E+02 0.0044 24.5 7.7 22 373-394 44-65 (74)
181 PF00170 bZIP_1: bZIP transcri 36.4 34 0.00073 27.6 2.6 29 490-518 35-63 (64)
182 PRK11519 tyrosine kinase; Prov 36.1 6.6E+02 0.014 29.3 13.7 28 332-359 337-364 (719)
183 PF04849 HAP1_N: HAP1 N-termin 35.8 6E+02 0.013 27.5 22.6 125 336-477 162-286 (306)
184 COG4942 Membrane-bound metallo 35.6 6.9E+02 0.015 28.2 21.0 72 314-385 36-110 (420)
185 PF00435 Spectrin: Spectrin re 35.3 2.3E+02 0.005 22.6 11.0 81 336-418 3-87 (105)
186 PF12329 TMF_DNA_bd: TATA elem 35.2 2.4E+02 0.0052 24.0 7.6 46 345-390 2-47 (74)
187 PLN03229 acetyl-coenzyme A car 35.1 9E+02 0.019 29.3 15.9 62 338-437 646-707 (762)
188 TIGR01000 bacteriocin_acc bact 34.5 6.4E+02 0.014 27.5 17.6 24 499-522 288-311 (457)
189 COG2433 Uncharacterized conser 34.4 2E+02 0.0043 33.8 9.1 34 217-253 476-509 (652)
190 PF13514 AAA_27: AAA domain 33.6 9.9E+02 0.021 29.4 36.5 63 104-180 527-589 (1111)
191 PF07989 Microtub_assoc: Micro 33.0 1.1E+02 0.0024 26.2 5.4 18 495-512 14-31 (75)
192 PF07439 DUF1515: Protein of u 33.0 1.5E+02 0.0032 27.8 6.4 53 336-388 10-66 (112)
193 PF09304 Cortex-I_coil: Cortex 32.9 4.1E+02 0.0089 24.8 9.2 43 493-535 42-87 (107)
194 PF02994 Transposase_22: L1 tr 32.3 55 0.0012 35.2 4.2 58 375-439 136-193 (370)
195 PF13870 DUF4201: Domain of un 31.8 4.6E+02 0.0099 25.0 15.3 159 332-520 4-177 (177)
196 COG4942 Membrane-bound metallo 31.1 8.1E+02 0.018 27.6 16.3 15 400-414 150-164 (420)
197 PF12795 MscS_porin: Mechanose 31.0 5.5E+02 0.012 25.6 18.8 124 242-382 81-212 (240)
198 PF07926 TPR_MLP1_2: TPR/MLP1/ 30.8 4.3E+02 0.0092 24.3 14.8 34 523-560 98-131 (132)
199 TIGR01010 BexC_CtrB_KpsE polys 30.2 6.6E+02 0.014 26.3 12.9 58 306-363 174-236 (362)
200 KOG4673 Transcription factor T 29.6 1.1E+03 0.024 28.7 23.8 44 368-411 522-565 (961)
201 PF07544 Med9: RNA polymerase 28.8 1.5E+02 0.0032 25.6 5.5 41 95-135 6-49 (83)
202 PF10234 Cluap1: Clusterin-ass 28.6 4.9E+02 0.011 27.5 10.1 114 222-353 123-237 (267)
203 PF15188 CCDC-167: Coiled-coil 28.5 1.6E+02 0.0035 26.3 5.7 60 223-282 2-65 (85)
204 PF07798 DUF1640: Protein of u 28.2 5.5E+02 0.012 24.7 13.4 100 461-560 45-150 (177)
205 PRK15422 septal ring assembly 28.0 2.2E+02 0.0048 25.3 6.3 52 368-419 17-68 (79)
206 PF05384 DegS: Sensor protein 27.8 5.9E+02 0.013 24.9 10.8 52 425-476 105-156 (159)
207 PF13747 DUF4164: Domain of un 27.7 4.3E+02 0.0093 23.3 8.5 44 372-415 35-78 (89)
208 COG3524 KpsE Capsule polysacch 27.6 3.4E+02 0.0074 29.8 8.9 106 236-352 164-269 (372)
209 PF05335 DUF745: Protein of un 27.4 6.4E+02 0.014 25.3 12.5 89 343-445 83-171 (188)
210 PRK13729 conjugal transfer pil 27.2 1.3E+02 0.0028 34.1 6.0 46 340-385 75-120 (475)
211 PF10212 TTKRSYEDQ: Predicted 27.2 1E+03 0.022 27.6 15.6 88 464-554 417-511 (518)
212 PF12252 SidE: Dot/Icm substra 26.8 9E+02 0.02 30.8 12.9 148 313-487 1018-1217(1439)
213 PF06810 Phage_GP20: Phage min 26.7 4.9E+02 0.011 25.0 9.1 74 338-419 24-97 (155)
214 PF03310 Cauli_DNA-bind: Cauli 26.7 1E+02 0.0022 29.2 4.3 17 171-189 85-101 (121)
215 PF09304 Cortex-I_coil: Cortex 26.6 2.4E+02 0.0051 26.4 6.5 21 367-387 14-34 (107)
216 KOG4360 Uncharacterized coiled 25.5 6.9E+02 0.015 29.2 11.1 96 427-522 200-295 (596)
217 PF00846 Hanta_nucleocap: Hant 25.2 1.6E+02 0.0035 32.9 6.1 68 280-355 1-70 (428)
218 COG2433 Uncharacterized conser 24.9 6.3E+02 0.014 29.9 10.9 69 334-402 436-507 (652)
219 PF10146 zf-C4H2: Zinc finger- 24.8 4.6E+02 0.01 26.9 9.0 45 516-560 39-86 (230)
220 COG1842 PspA Phage shock prote 24.7 7.7E+02 0.017 25.3 15.4 164 341-523 24-187 (225)
221 PRK13169 DNA replication intia 24.5 1.5E+02 0.0031 27.5 4.9 52 457-515 5-56 (110)
222 PF09738 DUF2051: Double stran 24.5 8.9E+02 0.019 26.0 11.4 58 374-438 75-132 (302)
223 KOG0964 Structural maintenance 24.0 1.6E+03 0.034 28.6 30.1 134 279-419 228-371 (1200)
224 PRK04325 hypothetical protein; 23.9 1E+02 0.0022 26.3 3.6 57 461-517 3-59 (74)
225 PF13863 DUF4200: Domain of un 23.8 5.1E+02 0.011 22.9 9.6 66 455-520 41-106 (126)
226 PF04111 APG6: Autophagy prote 23.6 6.2E+02 0.013 26.9 9.9 40 368-407 98-137 (314)
227 KOG0982 Centrosomal protein Nu 23.5 1.2E+03 0.025 26.9 20.6 218 309-545 225-473 (502)
228 PRK04406 hypothetical protein; 23.4 1.9E+02 0.0042 24.8 5.1 23 460-482 4-26 (75)
229 PF07106 TBPIP: Tat binding pr 23.3 3.1E+02 0.0066 26.0 7.0 61 335-395 73-135 (169)
230 PRK02119 hypothetical protein; 23.3 1.2E+02 0.0026 25.8 3.9 56 462-517 4-59 (73)
231 PF04102 SlyX: SlyX; InterPro 23.3 1.5E+02 0.0033 24.7 4.4 18 465-482 2-19 (69)
232 PF00769 ERM: Ezrin/radixin/mo 23.0 8.3E+02 0.018 25.0 15.3 67 370-443 27-93 (246)
233 KOG1962 B-cell receptor-associ 22.6 6.5E+02 0.014 26.0 9.5 65 493-561 149-213 (216)
234 smart00498 FH2 Formin Homology 22.5 6.8E+02 0.015 27.3 10.3 106 59-178 242-347 (432)
235 PRK02793 phi X174 lysis protei 22.4 1.1E+02 0.0025 25.9 3.5 57 461-517 2-58 (72)
236 PF09177 Syntaxin-6_N: Syntaxi 22.4 5.1E+02 0.011 22.5 7.7 82 458-547 10-94 (97)
237 cd07665 BAR_SNX1 The Bin/Amphi 22.4 8.7E+02 0.019 25.0 11.6 121 230-381 78-211 (234)
238 PF05529 Bap31: B-cell recepto 22.4 4.6E+02 0.0099 25.2 8.1 33 370-402 155-187 (192)
239 PRK09841 cryptic autophosphory 22.2 5.2E+02 0.011 30.1 9.9 73 265-360 258-330 (726)
240 PF04582 Reo_sigmaC: Reovirus 22.1 1.2E+02 0.0026 32.9 4.4 105 264-386 32-136 (326)
241 PLN03229 acetyl-coenzyme A car 22.1 1.5E+03 0.032 27.6 15.7 59 256-315 432-492 (762)
242 smart00340 HALZ homeobox assoc 21.8 67 0.0014 25.6 1.9 22 398-419 13-34 (44)
243 PTZ00464 SNF-7-like protein; P 21.8 5.9E+02 0.013 25.8 9.0 58 500-560 37-94 (211)
244 PF02181 FH2: Formin Homology 21.6 9.4E+02 0.02 25.1 11.2 173 107-319 139-322 (370)
245 KOG3647 Predicted coiled-coil 21.6 3.6E+02 0.0079 29.1 7.6 58 275-332 106-163 (338)
246 PF10211 Ax_dynein_light: Axon 21.5 7.9E+02 0.017 24.2 10.3 30 487-516 126-155 (189)
247 COG1382 GimC Prefoldin, chaper 21.3 5.5E+02 0.012 24.3 8.0 71 285-359 10-95 (119)
248 PF07544 Med9: RNA polymerase 21.3 5.4E+02 0.012 22.2 8.2 75 134-233 3-77 (83)
249 KOG0249 LAR-interacting protei 21.2 1.6E+03 0.034 27.6 17.0 83 332-419 103-185 (916)
250 KOG1850 Myosin-like coiled-coi 21.2 1.2E+03 0.025 26.0 20.1 77 442-533 98-174 (391)
251 PF09744 Jnk-SapK_ap_N: JNK_SA 21.1 6.6E+02 0.014 24.5 8.8 49 370-418 90-138 (158)
252 PRK00846 hypothetical protein; 21.1 1.4E+02 0.003 26.1 3.8 54 464-517 10-63 (77)
253 PF06818 Fez1: Fez1; InterPro 20.6 6.1E+02 0.013 26.0 8.7 28 333-360 30-57 (202)
254 KOG4603 TBP-1 interacting prot 20.5 5.9E+02 0.013 25.9 8.5 96 299-394 30-141 (201)
255 COG3937 Uncharacterized conser 20.3 3.1E+02 0.0066 25.7 6.0 26 332-357 81-106 (108)
256 KOG1899 LAR transmembrane tyro 20.3 9.6E+02 0.021 28.9 11.1 53 460-515 139-194 (861)
257 COG3206 GumC Uncharacterized p 20.2 1.1E+03 0.025 25.6 16.9 56 238-293 180-236 (458)
No 1
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.87 E-value=4.8e-07 Score=88.90 Aligned_cols=231 Identities=26% Similarity=0.314 Sum_probs=173.9
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhcccchhchhHHHHHHHhHHHHHhhhhHHHH
Q 008522 247 KLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQ 326 (563)
Q Consensus 247 kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~Le 326 (563)
|+..+.++....++.+..+-..+=+++...+-.-+....|..|++.++-+|..+..|=.....||......+......+.
T Consensus 2 K~~~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k 81 (237)
T PF00261_consen 2 KIQQLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARK 81 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666666666667777777777788899999999999999888888999999999988888777777
Q ss_pred HhhhcCchhhhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHhhhhhhh
Q 008522 327 KLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTN 406 (563)
Q Consensus 327 kl~~s~~SE~~sL~eKv~sLEeQLkese~Ql~~akas~ea~~~~isdmEn~IedLK~kvskAESRAe~AEskc~lLteTN 406 (563)
.|+.. ..+--+|+..||.+|++.......+....+....++.-++ ..+.+||.|++.++++|..|-+.
T Consensus 82 ~lE~r----~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E-------~~Le~aEeR~e~~E~ki~eLE~e- 149 (237)
T PF00261_consen 82 VLENR----EQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLE-------QELERAEERAEAAESKIKELEEE- 149 (237)
T ss_dssp HHHHH----HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhhhchhHHHHHHH-
Confidence 77664 3466778888888888888887777777665555555444 44557777777777777655432
Q ss_pred HHHHHHHhhhhcCCCCcchhhhhhHHHHhhHHHHHHHhHhhhhhhHHHHHhHHHHHhhHHHHHHHHHHhhhhhhhhchhh
Q 008522 407 LELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESV 486 (563)
Q Consensus 407 ~EL~eEL~~Lks~~ss~~ek~~~LE~qLkese~QLqhA~As~eAs~eqQ~ml~sti~DME~vIedLksKv~kaE~rae~~ 486 (563)
|.. +...|+.++ ++.+ -.+....+++.-|.+|..++..+++||+.+
T Consensus 150 ------l~~--------------~~~~lk~lE-----------~~~~---~~~~re~~~e~~i~~L~~~lkeaE~Rae~a 195 (237)
T PF00261_consen 150 ------LKS--------------VGNNLKSLE-----------ASEE---KASEREDEYEEKIRDLEEKLKEAENRAEFA 195 (237)
T ss_dssp ------HHH--------------HHHHHHHHH-----------HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------HHH--------------HHHHHHHhh-----------hhhh---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 222333322 2222 124457888999999999999999999999
Q ss_pred hhhhcccccchhhhhhhhhhHHhHHHHHHHhHHHHHH
Q 008522 487 EEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANI 523 (563)
Q Consensus 487 E~kc~~LsEtN~eLneELsflrsk~~~LE~sL~~A~~ 523 (563)
|.+|..|-..+-.|..+|...+.+..++..-|+.+..
T Consensus 196 E~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~~l~ 232 (237)
T PF00261_consen 196 ERRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQTLN 232 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999987764
No 2
>PRK02224 chromosome segregation protein; Provisional
Probab=98.67 E-value=0.00079 Score=76.23 Aligned_cols=44 Identities=18% Similarity=0.207 Sum_probs=29.4
Q ss_pred hHHHhhHHHhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhc
Q 008522 229 DLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEA 272 (563)
Q Consensus 229 dLEkkL~~s~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EA 272 (563)
.++.++.......+++..++...+.....++.....+....-.+
T Consensus 262 ~l~~~i~~~e~~~~~l~~~i~~~~~~~~~le~e~~~l~~~l~~~ 305 (880)
T PRK02224 262 DLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLD 305 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 36666666666667777777777777777776666655554333
No 3
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.57 E-value=0.00037 Score=79.49 Aligned_cols=55 Identities=18% Similarity=0.262 Sum_probs=29.7
Q ss_pred chHHHHHHHHHH---HHhhhhhhhHHHhhHHHhhhHHHHHhhhhhhhHHHHHHHHHHH
Q 008522 209 NADQQRHILRML---EKSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAE 263 (563)
Q Consensus 209 t~eqqR~iLrML---ekSlA~EldLEkkL~~s~~~eeeLk~kL~~~eqe~~~lEE~~~ 263 (563)
.+..+|.+|..+ .....+--+...+|.....+..+++..+.........++....
T Consensus 151 ~~~~r~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~l~el~~~~~~L~~q~~~l~~~~e 208 (1164)
T TIGR02169 151 SPVERRKIIDEIAGVAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRRERE 208 (1164)
T ss_pred CHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788887654 2222333344555555555666666666555555555544433
No 4
>PRK02224 chromosome segregation protein; Provisional
Probab=98.57 E-value=0.00045 Score=78.16 Aligned_cols=292 Identities=17% Similarity=0.238 Sum_probs=165.3
Q ss_pred HHHHHHhhhhh--hhHHHhhHHHhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHH---HhccchHHHHhhhhHHHHhhhh
Q 008522 217 LRMLEKSLARE--LDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRF---LEAENSAEVLMGISKEMLGRFQ 291 (563)
Q Consensus 217 LrMLekSlA~E--ldLEkkL~~s~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~---~EAENa~EvL~g~skel~gkLq 291 (563)
+.-++..|... -+++..|...+.-..++..++....+....++.....+..++ -...+..+.+.+..+.+..+++
T Consensus 189 ~~~~~~~l~~~~~~~l~~~l~~~~~~l~el~~~i~~~~~~~~~l~~~l~~l~~~~~el~~~~~~l~~l~~~~~~l~~~i~ 268 (880)
T PRK02224 189 LDQLKAQIEEKEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAEIEDLRETIA 268 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444433 344555555555555555555555555555544444443333 2222344555555555556665
Q ss_pred HHhhhcccchhchhHHHHHHHhHHHHHhhhhHHHHHhhhc---Cchhh-------hhHHHHHHHHHHHHHHHHHHHhhhh
Q 008522 292 IVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLEST---KNSEV-------LTMKEKVKSLEEQLKESEIRLQNAN 361 (563)
Q Consensus 292 ~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~Lekl~~s---~~SE~-------~sL~eKv~sLEeQLkese~Ql~~ak 361 (563)
..+..+ ..+..++.....++......++.+... ..... ..+..|...|+..+.+...++....
T Consensus 269 ~~e~~~-------~~l~~~i~~~~~~~~~le~e~~~l~~~l~~~~~~~~~l~~~~~~l~~k~~el~~~l~~~~~~l~~~~ 341 (880)
T PRK02224 269 ETERER-------EELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHN 341 (880)
T ss_pred HHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555 444444444444333333333332222 12222 3455666666666666665556666
Q ss_pred hchhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHhhhhhhhHHHHHHHhhhhcCCCCcchhhhhhHHHHhhHHHHH
Q 008522 362 ACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQL 441 (563)
Q Consensus 362 as~ea~~~~isdmEn~IedLK~kvskAESRAe~AEskc~lLteTN~EL~eEL~~Lks~~ss~~ek~~~LE~qLkese~QL 441 (563)
...+.....+..++.-+.++...+..+.+....++.+...+...-..|..++..++.. +...+..+..++..+
T Consensus 342 ~~~e~~~~~~~~le~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~l~~el~el~~~-------l~~~~~~~~~~e~~l 414 (880)
T PRK02224 342 EEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRER-------FGDAPVDLGNAEDFL 414 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhcchhhhhhhHHHH
Confidence 6566778888899999999999999999999999999998888888888888888775 333334555555555
Q ss_pred HHhHhhhhhhHHHHHhHHHHHhhHHHHHHHHHHhhhhhhhhchhhhhhhcc----cccchh-----hhhhhhhhHHhHHH
Q 008522 442 QQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIV----LSEDNF-----ELKNKQSFMRDKIK 512 (563)
Q Consensus 442 qhA~As~eAs~eqQ~ml~sti~DME~vIedLksKv~kaE~rae~~E~kc~~----LsEtN~-----eLneELsflrsk~~ 512 (563)
+.+....+.-...-+.+.+++...+..|+.++..+.. ..|-+ +..... ++...+.-++...+
T Consensus 415 ~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~---------~~Cp~C~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (880)
T PRK02224 415 EELREERDELREREAELEATLRTARERVEEAEALLEA---------GKCPECGQPVEGSPHVETIEEDRERVEELEAELE 485 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------ccCCCCCCcCCCcchhhhHHHHHHHHHHHHHHHH
Confidence 5555555555555566666777777777777643321 22432 222222 45555555666666
Q ss_pred HHHHhHHHHHHHHHhhHHHH
Q 008522 513 ILESSLNRANIEKAASAKEV 532 (563)
Q Consensus 513 ~LE~sL~~A~~~K~~TakdI 532 (563)
.|+..+..++. +..+++++
T Consensus 486 ~le~~l~~~~~-~~e~l~~~ 504 (880)
T PRK02224 486 DLEEEVEEVEE-RLERAEDL 504 (880)
T ss_pred HHHHHHHHHHH-HHHHHHHH
Confidence 66666665554 33333333
No 5
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.41 E-value=0.00037 Score=78.96 Aligned_cols=18 Identities=22% Similarity=0.425 Sum_probs=8.7
Q ss_pred hhhhhHHhHHHHHHHhHH
Q 008522 502 NKQSFMRDKIKILESSLN 519 (563)
Q Consensus 502 eELsflrsk~~~LE~sL~ 519 (563)
.++.-++.+++.|...+.
T Consensus 965 ~~~~~l~~~i~~lg~aie 982 (1179)
T TIGR02168 965 DDEEEARRRLKRLENKIK 982 (1179)
T ss_pred cCHHHHHHHHHHHHHHHH
Confidence 344455555555544333
No 6
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.36 E-value=0.0057 Score=73.31 Aligned_cols=373 Identities=13% Similarity=0.111 Sum_probs=168.3
Q ss_pred hhhhhHhhHHHHHHHHHHHHHhhHhhhhhhhhcccCCCcccccccccCCcccccccccccchHHHHHHHHHHHHhhhh--
Q 008522 149 KLHDCEGSLKESQEHVSELKMQSAKFQRVLSYFIHGNNDEALEFSANGQLSNINGKSKMKNADQQRHILRMLEKSLAR-- 226 (563)
Q Consensus 149 kL~~~~~sLkq~qe~~~eik~qsa~f~r~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~mqt~eqqR~iLrMLekSlA~-- 226 (563)
-..++..-|.+.++.+...+...+.|.-+..+|...-..-. -..++-|+-- +-++...+-...++.-|+..+.+
T Consensus 633 ~~~~~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~k~ie~a~--~~~~~~C~LC--~R~f~~eee~~~f~~~L~~~~~~~p 708 (1311)
T TIGR00606 633 GSQDEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLT--DENQSCCPVC--QRVFQTEAELQEFISDLQSKLRLAP 708 (1311)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hccCCcCCCC--CCCCCChhHHHHHHHHHHHHHhcch
Confidence 34556677777777777777777766666665541111000 0011222111 12222223234555555555554
Q ss_pred --hhhHHHhhHHHhhhHHHHHhh------hhhh-hHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhc
Q 008522 227 --ELDLEKKISELNQNEEQLKLK------LHHT-EQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNL 297 (563)
Q Consensus 227 --EldLEkkL~~s~~~eeeLk~k------L~~~-eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L 297 (563)
.-.+++.+.+.+..-+.|..- .... ..+...+++....+-..+-...+..+-+......+...++.++. |
T Consensus 709 ~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~l~~~eip~l~~~l~~le~~l~~~~~~le~~~~~l~~~~~~~~~~es-L 787 (1311)
T TIGR00606 709 DKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKV-C 787 (1311)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-H
Confidence 233344444333333332211 1111 12223334444444444444444333333333333333333332 1
Q ss_pred ccchhchhHHHHHHHhHHHHHhhhhHHHHHhhhcCchhhhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhh---
Q 008522 298 NGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEM--- 374 (563)
Q Consensus 298 ~as~~REsel~sKL~~~~eqL~~k~~~Lekl~~s~~SE~~sL~eKv~sLEeQLkese~Ql~~akas~ea~~~~isdm--- 374 (563)
.+....=..+...+.....+++.....+..... +--+..+...+..++.++......+.......+....+|+.+
T Consensus 788 ~~~v~~i~r~~~ei~~l~~qie~l~~~l~~~~~--~~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~k 865 (1311)
T TIGR00606 788 LTDVTIMERFQMELKDVERKIAQQAAKLQGSDL--DRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSK 865 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111100011222333333333332222221111 112334555566666666555555555555555555566666
Q ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHhhhhhhhHHHHHHHhhhhcCCCCcchhhhhhHHHHhhHHHHHHHhHhhhhhhHHH
Q 008522 375 DNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQ 454 (563)
Q Consensus 375 En~IedLK~kvskAESRAe~AEskc~lLteTN~EL~eEL~~Lks~~ss~~ek~~~LE~qLkese~QLqhA~As~eAs~eq 454 (563)
.+-+.+.+.++.++-.+-.+.+.+..-|.+-+.++..++..++.. +.-|...+.....++...+...++...+
T Consensus 866 i~el~~~klkl~~~l~~r~~le~~L~el~~el~~l~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 938 (1311)
T TIGR00606 866 TNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQ-------DSPLETFLEKDQQEKEELISSKETSNKK 938 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666677766677777777777777777777777777664 4555555555555554444444444322
Q ss_pred HHhHHHHHhhHHHHHHHHHHhhhhhhh-----hchhhhhhhcccccchhhhhhhhhhHHhHHHHHHHhHHHHHHHHHhhH
Q 008522 455 QSMLYSAIWDMETLIEDLKSKVSKAES-----KTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASA 529 (563)
Q Consensus 455 Q~ml~sti~DME~vIedLksKv~kaE~-----rae~~E~kc~~LsEtN~eLneELsflrsk~~~LE~sL~~A~~~K~~Ta 529 (563)
...-+..++..-+-|..+-..+..... ..+..+.++..+..+=-.+..++.-+..++..+...++.....|..-.
T Consensus 939 ~~~~~~~~~~~~~~~~~~~~~i~~y~~~~~~~qL~~~e~el~~~~~~ie~le~e~~~l~~~i~~l~kel~~~~~~kr~l~ 1018 (1311)
T TIGR00606 939 AQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQ 1018 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222222222222222222221111 122333333333333345555666666666666666666665555555
Q ss_pred HHHHHH
Q 008522 530 KEVNHR 535 (563)
Q Consensus 530 kdI~~~ 535 (563)
..|..+
T Consensus 1019 dnL~~~ 1024 (1311)
T TIGR00606 1019 DNLTLR 1024 (1311)
T ss_pred HHHHHH
Confidence 555544
No 7
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.29 E-value=0.0037 Score=71.55 Aligned_cols=83 Identities=18% Similarity=0.310 Sum_probs=38.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHhhhhhhhHHHHHHHh
Q 008522 335 EVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEIN 414 (563)
Q Consensus 335 E~~sL~eKv~sLEeQLkese~Ql~~akas~ea~~~~isdmEn~IedLK~kvskAESRAe~AEskc~lLteTN~EL~eEL~ 414 (563)
+...+..++..++.++.....++............++..+..-++.++..+...+......+..+..+.....++..++.
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~ 374 (1164)
T TIGR02169 295 KIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELE 374 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444333444444444445555555544444444444444444444444444444
Q ss_pred hhh
Q 008522 415 FLK 417 (563)
Q Consensus 415 ~Lk 417 (563)
.++
T Consensus 375 ~~~ 377 (1164)
T TIGR02169 375 EVD 377 (1164)
T ss_pred HHH
Confidence 333
No 8
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.26 E-value=0.018 Score=65.57 Aligned_cols=42 Identities=7% Similarity=0.106 Sum_probs=26.7
Q ss_pred ccchhhhhhhhhhHHhHHHHHHHhHHHHHHHHHhhHHHHHHH
Q 008522 494 SEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHR 535 (563)
Q Consensus 494 sEtN~eLneELsflrsk~~~LE~sL~~A~~~K~~TakdI~~~ 535 (563)
.+.|...-+.+.||..+..+|+.........-..--+.+..+
T Consensus 985 ~~~~~~a~er~~~l~~q~~dL~~~~~~L~~~i~~i~~~~~~~ 1026 (1179)
T TIGR02168 985 GPVNLAAIEEYEELKERYDFLTAQKEDLTEAKETLEEAIEEI 1026 (1179)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555557888888888888877777665555444444433
No 9
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.24 E-value=0.0016 Score=77.05 Aligned_cols=79 Identities=18% Similarity=0.197 Sum_probs=37.0
Q ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhcccchhchhHHHHHHHhHHHHHh
Q 008522 241 EEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLK 319 (563)
Q Consensus 241 eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~ 319 (563)
...++..+.+.++....+......+..++-.+.+...-+....+.+.++++.+...+......-.++..++....+.+.
T Consensus 690 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 768 (1163)
T COG1196 690 LKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELE 768 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444445555555555566666665555555433333334444444444433
No 10
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.22 E-value=0.018 Score=71.72 Aligned_cols=265 Identities=25% Similarity=0.327 Sum_probs=177.6
Q ss_pred hHHHHhhhhHHhhhcccchhchhHHHHHHHhHHHHHhhhhHHH-------HHhh-------hc-----------------
Q 008522 283 SKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVL-------QKLE-------ST----------------- 331 (563)
Q Consensus 283 skel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~L-------ekl~-------~s----------------- 331 (563)
-.+.-.+++..|-.++++..+=.||+..|...+..|.+-+..- ..+. ..
T Consensus 1507 ~~e~~k~v~elek~~r~le~e~~elQ~aLeElE~~le~eE~~~lr~~~~~~~~r~e~er~l~ek~Ee~E~~rk~~~~~i~ 1586 (1930)
T KOG0161|consen 1507 KDEGGKRVHELEKEKRRLEQEKEELQAALEELEAALEAEEDKKLRLQLELQQLRSEIERRLQEKDEEIEELRKNLQRQLE 1586 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 3344556677777777777777778888877777666421111 1111 11
Q ss_pred -----CchhhhhHHHHHH---HHHHHHHHHHHHHhhhhhchhhhHH--------------HHhhhHHHHHHHHHHHHhhh
Q 008522 332 -----KNSEVLTMKEKVK---SLEEQLKESEIRLQNANACFQTSQE--------------QLNEMDNFIESLKESLYGAE 389 (563)
Q Consensus 332 -----~~SE~~sL~eKv~---sLEeQLkese~Ql~~akas~ea~~~--------------~isdmEn~IedLK~kvskAE 389 (563)
-++|...=.+-+. -||.++.+.+.++.+|.......+. ++.+--...+++++.+..||
T Consensus 1587 ~~q~~Le~E~r~k~e~~r~KKkle~di~elE~~ld~ank~~~d~~K~lkk~q~~~k~lq~~~e~~~~~~~e~~~q~~~ae 1666 (1930)
T KOG0161|consen 1587 SLQAELEAETRSKSEALRSKKKLEGDINELEIQLDHANKANEDAQKQLKKLQAQLKELQRELEDAQRAREELLEQLAEAE 1666 (1930)
T ss_pred HHHHhhhHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1233333222232 3888888999988877655533222 33355556778999999999
Q ss_pred hhhhhHHHHHhhhhhhhH--------------HHHHHHhhhhcCCCCcchhhhhhHHHHhhHHHHHHHhH----------
Q 008522 390 SRAESAEEKVTQLTDTNL--------------ELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAK---------- 445 (563)
Q Consensus 390 SRAe~AEskc~lLteTN~--------------EL~eEL~~Lks~~ss~~ek~~~LE~qLkese~QLqhA~---------- 445 (563)
-|+..+.++|..|..... |+.+.++.+.+++++.+..=.-||..|.-++..|+...
T Consensus 1667 rr~~~l~~E~eeL~~~l~~~~Rarr~aE~e~~E~~e~i~~~~~~~s~l~~~KrklE~~i~~l~~elee~~~~~~~~~Er~ 1746 (1930)
T KOG0161|consen 1667 RRLAALQAELEELREKLEALERARRQAELELEELAERVNELNAQNSSLTAEKRKLEAEIAQLQSELEEEQSELRAAEERA 1746 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 999999999999987654 45567899998866654544556666655555554443
Q ss_pred --hhhhhhH-------HHHH--hHHHHHhhHHHHHHHHHHhhhhhhhhchhhhhhhcccccchhhhhhhhhhHHhHHHHH
Q 008522 446 --VSSEASQ-------EQQS--MLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKIL 514 (563)
Q Consensus 446 --As~eAs~-------eqQ~--ml~sti~DME~vIedLksKv~kaE~rae~~E~kc~~LsEtN~eLneELsflrsk~~~L 514 (563)
|.++|.+ +|.. -+++.-+-||.-+.||+.++-.+|..| +.-. ..-++-|+.|+.+|
T Consensus 1747 kka~~~a~~~~~el~~Eq~~~~~le~~k~~LE~~~kdLq~rL~e~E~~a---------~~~~----k~~i~~Learir~L 1813 (1930)
T KOG0161|consen 1747 KKAQADAAKLAEELRKEQETSQKLERLKKSLERQVKDLQLRLDEAEQAA---------LKGG----KKQIAKLEARIREL 1813 (1930)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---------hhcc----HHHHHHHHHHHHHH
Confidence 3333322 2111 134456678889999999999998652 2211 13467799999999
Q ss_pred HHhHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHH---HHHHHHHHHh
Q 008522 515 ESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQR---ELIQKQVLIL 560 (563)
Q Consensus 515 E~sL~~A~~~K~~TakdI~~~tK~i~dLv~qLa~ER---ErL~~Qissl 560 (563)
|+.|+.....+..+.|-..-.-+.|.+|-.|...++ +|++.++.-+
T Consensus 1814 E~~l~~E~~~~~e~~k~~rk~er~vkEl~~q~eed~k~~~~~q~~~dkl 1862 (1930)
T KOG0161|consen 1814 ESELEGEQRRKAEAIKGLRKKERRVKELQFQVEEDKKNIERLQDLVDKL 1862 (1930)
T ss_pred HHHHhHhhhhhHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 999999999999999999999999999999998886 5666666544
No 11
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.15 E-value=0.00026 Score=69.85 Aligned_cols=138 Identities=28% Similarity=0.319 Sum_probs=98.2
Q ss_pred HHhhhhHHHHhhhhHHhhhcccchhchhHHHHHHHhHHHHHhhhhHHHHHhhhcCchhhhhHHHHHHHHHHHHHHHHHHH
Q 008522 278 VLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRL 357 (563)
Q Consensus 278 vL~g~skel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~Lekl~~s~~SE~~sL~eKv~sLEeQLkese~Ql 357 (563)
+|-+-....-+|+..++..|..+..+-.+.-.|+..+.-+|..-...|+..+.- +-.+..|+..||..|+.....+
T Consensus 82 ~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR----~e~~E~ki~eLE~el~~~~~~l 157 (237)
T PF00261_consen 82 VLENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEER----AEAAESKIKELEEELKSVGNNL 157 (237)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhhhchhHHHHHHHHHHHHHHH
Confidence 444444444455555555555555555555555555555555544444444432 3356667777777777777777
Q ss_pred hhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHhhhhhhhHHHHHHHhhhhcC
Q 008522 358 QNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGN 419 (563)
Q Consensus 358 ~~akas~ea~~~~isdmEn~IedLK~kvskAESRAe~AEskc~lLteTN~EL~eEL~~Lks~ 419 (563)
.+..++.+........++.-|..|..++..||.||+.|+.+|..|-..+-.|..+|..-+..
T Consensus 158 k~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~ 219 (237)
T PF00261_consen 158 KSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEK 219 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777766677778899999999999999999999999999999999999999998887774
No 12
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.14 E-value=0.041 Score=66.23 Aligned_cols=110 Identities=12% Similarity=0.140 Sum_probs=64.9
Q ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhcccchhchhHHHHHHHhHHHHHhh
Q 008522 241 EEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKA 320 (563)
Q Consensus 241 eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~ 320 (563)
.+++..|...........-+....+.+ .+ ..+ ..|......+...+...+-..++....-..+..++.....++..
T Consensus 541 ~~~~~~k~~~~~~~~~~~~~~~~~~~~-~~-~~~--~~l~~~~~~~~~el~~~~~~~~~~~~el~~~e~~l~~~~~~l~~ 616 (1311)
T TIGR00606 541 TKDKMDKDEQIRKIKSRHSDELTSLLG-YF-PNK--KQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELES 616 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC-CC-CCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444344444444 33 455 55677777777788888888888888888888888888888888
Q ss_pred hhHHHHHhhhc--CchhhhhHHHHHHHHHHHHHHHH
Q 008522 321 KDMVLQKLEST--KNSEVLTMKEKVKSLEEQLKESE 354 (563)
Q Consensus 321 k~~~Lekl~~s--~~SE~~sL~eKv~sLEeQLkese 354 (563)
....|+..... .+.+.-..-+-|..++..+....
T Consensus 617 ~~~eL~~~~~~i~~~~~~~~~~~~L~~~~~~l~~~~ 652 (1311)
T TIGR00606 617 KEEQLSSYEDKLFDVCGSQDEESDLERLKEEIEKSS 652 (1311)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHH
Confidence 77777755543 11122223334444444444444
No 13
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.11 E-value=0.061 Score=67.25 Aligned_cols=282 Identities=18% Similarity=0.207 Sum_probs=140.1
Q ss_pred HHHHHHHHHHHhhhhhhhHHHhhHHHhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHH----HhhhhHHHH
Q 008522 212 QQRHILRMLEKSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEV----LMGISKEML 287 (563)
Q Consensus 212 qqR~iLrMLekSlA~EldLEkkL~~s~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~Ev----L~g~skel~ 287 (563)
+..-+...||..-+.---+|++..+...-.++|+..|--......-..+....-|..+....=..+- .-+....+.
T Consensus 1105 ~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~~~~t~~q~e~~~k~e~e~~~l~~~leee~~~~e~~~~~lr 1184 (1930)
T KOG0161|consen 1105 RIKELEEELEAERASRAKAERQRRDLSEELEELKEELEEQGGTTAAQLELNKKREAEVQKLRRDLEEETLDHEAQIEELR 1184 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3455667777777777777888888777777777777555443433444333333332221110000 001111111
Q ss_pred hhhhHHhhhcccchhchhHHHHHHHhHHHHHhhhhHHHHHhhhcCchhhhhHHHHHH-------HHHHHHHHHHHHHhhh
Q 008522 288 GRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVK-------SLEEQLKESEIRLQNA 360 (563)
Q Consensus 288 gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~Lekl~~s~~SE~~sL~eKv~-------sLEeQLkese~Ql~~a 360 (563)
++=++-..-|....+++...+..+++-.+.-..|+.++...|. .+|+..+-++.|+..+
T Consensus 1185 --------------~~~~~~~~el~~qle~l~~~k~~lekek~~lq~e~~~l~~ev~~~~~~k~~~e~~~k~~E~~l~el 1250 (1930)
T KOG0161|consen 1185 --------------KKHADSLAELQEQLEQLQKDKAKLEKEKSDLQREIADLAAELEQLSSEKKDLEKKDKKLEAQLSEL 1250 (1930)
T ss_pred --------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHH
Confidence 1112222223333333333333333333332222222222222 2233333333333333
Q ss_pred hhchhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHhhhhhhhHHHHHHHhhhhcCCCCcc----------------
Q 008522 361 NACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNT---------------- 424 (563)
Q Consensus 361 kas~ea~~~~isdmEn~IedLK~kvskAESRAe~AEskc~lLteTN~EL~eEL~~Lks~~ss~~---------------- 424 (563)
.+..+.....++++-.-.-.+...+..=.++-+.++++|..++..+..+...|.++|++-...+
T Consensus 1251 q~k~~~~~~~~~~l~~q~~~l~~E~~~l~~~lee~e~~~~~~~r~~~~~~~qle~~k~qle~e~r~k~~l~~~l~~l~~e 1330 (1930)
T KOG0161|consen 1251 QLKLDEQERLRNDLTAKRSRLQNENEELSRQLEEAEAKLSALSRDKQALESQLEELKRQLEEETREKSALENALRQLEHE 1330 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333332222222222233334444444455555555666666666666666655555533222
Q ss_pred ------------hhhhhhHHHHhhHHHHHHHhHhhhhhhHHHHHhHHHHHhhHHHHHHHHHHhhhhhhhhchhhhhhhcc
Q 008522 425 ------------KKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIV 492 (563)
Q Consensus 425 ------------ek~~~LE~qLkese~QLqhA~As~eAs~eqQ~ml~sti~DME~vIedLksKv~kaE~rae~~E~kc~~ 492 (563)
+-.+-|++++.....+++.++.-.++. ....+..++-....|..++..++.+.+-+..+|..
T Consensus 1331 ~~~l~e~leee~e~~~~l~r~lsk~~~e~~~~~~k~e~~------~~~~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~ 1404 (1930)
T KOG0161|consen 1331 LDLLREQLEEEQEAKNELERKLSKANAELAQWKKKFEEE------VLQRLEELEELKKKLQQRLQELEEQIEAANAKNAS 1404 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 233444444444444444443333322 33457788888888899999999999999999999
Q ss_pred cccchhhhhhhhhhHHhHHHH
Q 008522 493 LSEDNFELKNKQSFMRDKIKI 513 (563)
Q Consensus 493 LsEtN~eLneELsflrsk~~~ 513 (563)
|-.+=-.|.+|+.-+..-+..
T Consensus 1405 Lek~k~~l~~el~d~~~d~~~ 1425 (1930)
T KOG0161|consen 1405 LEKAKNRLQQELEDLQLDLER 1425 (1930)
T ss_pred HHHHHHHHHhHHHHHHHHHHH
Confidence 988888888887766655543
No 14
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.98 E-value=0.024 Score=67.40 Aligned_cols=312 Identities=22% Similarity=0.275 Sum_probs=151.7
Q ss_pred hhHHHhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhcccchhchhHHHHHHH
Q 008522 233 KISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLG 312 (563)
Q Consensus 233 kL~~s~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~sKL~ 312 (563)
.+.+.+....+++.++.....+...++.....+..|+-.-++-.+-|.+....+..++...+-++......-..+...+.
T Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~ 782 (1163)
T COG1196 703 LLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIE 782 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555555555566666777777777777777778888888888888888777777666655555555
Q ss_pred hHHHHHhhhhHHHHHhhhcCchhhhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhhh
Q 008522 313 DFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRA 392 (563)
Q Consensus 313 ~~~eqL~~k~~~Lekl~~s~~SE~~sL~eKv~sLEeQLkese~Ql~~akas~ea~~~~isdmEn~IedLK~kvskAESRA 392 (563)
............+..++. +...+...+..++.++.....+...+....+....++...+.-+..++..+...+.+.
T Consensus 783 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~l~~~~~~~~~~~~~l~~~~~~~~~~~ 858 (1163)
T COG1196 783 ELEEKRQALQEELEELEE----ELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKEL 858 (1163)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 444333322222222222 1112223333344444433333333333333333344444444444444444444444
Q ss_pred hhHHHHHhhhhhhhHHHHHHHhhhhcCCCCcchhhhhhHHHHhhHHHHHHHhHhhhhhhHHHHHhHHHHHhhHHHHHHHH
Q 008522 393 ESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDL 472 (563)
Q Consensus 393 e~AEskc~lLteTN~EL~eEL~~Lks~~ss~~ek~~~LE~qLkese~QLqhA~As~eAs~eqQ~ml~sti~DME~vIedL 472 (563)
.+...+..-+...=.+++..+..++.. ...+++++++....+...+....--......+....+-++.-+..+
T Consensus 859 ~~~~~~l~~~~~~~~~l~~~l~~~~~~-------~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 931 (1163)
T COG1196 859 EELKEELEELEAEKEELEDELKELEEE-------KEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPEL 931 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444443333334444444444442 3444444444333333333222222221211111111111111111
Q ss_pred HHhhh---------hhhhhchhhhhhhcccccchhhhhhhhhhHHhHHHHHHHhHHHHHHHHHhh---HHHHHHH-hHHH
Q 008522 473 KSKVS---------KAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAAS---AKEVNHR-TKLM 539 (563)
Q Consensus 473 ksKv~---------kaE~rae~~E~kc~~LsEtN~eLneELsflrsk~~~LE~sL~~A~~~K~~T---akdI~~~-tK~i 539 (563)
..... ..+.+...++.++-.|-..|+.-=+|..-...|...|..........+..- ..++.-. ...+
T Consensus 932 ~~~~~~~~~~~~~~~~~~~i~~le~~i~~lg~VN~~Aiee~e~~~~r~~~l~~~~~dl~~a~~~l~~~i~~~d~~~~~~f 1011 (1163)
T COG1196 932 EEELEEEYEDTLETELEREIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKEKRERF 1011 (1163)
T ss_pred HhhhccccccchhHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11110 345555556666888888887766666666666666666655555544432 2233322 5566
Q ss_pred HHHHHHHHHHHHHHHH
Q 008522 540 MEMVMQLATQRELIQK 555 (563)
Q Consensus 540 ~dLv~qLa~ERErL~~ 555 (563)
++........-.++=.
T Consensus 1012 ~~~f~~In~~F~~if~ 1027 (1163)
T COG1196 1012 KETFDKINENFSEIFK 1027 (1163)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666666665555443
No 15
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.85 E-value=0.0089 Score=64.17 Aligned_cols=123 Identities=10% Similarity=0.174 Sum_probs=76.7
Q ss_pred hhhhhhHHHHhhHHHHHHHhHhhhh---hhHHHHHhHHHHHhhHHHHHHHHHHhhhhhhhhchhhhhhhcccccchhhhh
Q 008522 425 KKVGILENQLRDLEIQLQQAKVSSE---ASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELK 501 (563)
Q Consensus 425 ek~~~LE~qLkese~QLqhA~As~e---As~eqQ~ml~sti~DME~vIedLksKv~kaE~rae~~E~kc~~LsEtN~eLn 501 (563)
.++..|..++...+.|+........ ....+-..+...+..++.-|...++.+.....+...++.+..-|...+.+++
T Consensus 299 ~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~ 378 (562)
T PHA02562 299 DRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNA 378 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchH
Confidence 4555555555555555555554444 3333334455677777777777777776666666777777777777788888
Q ss_pred hhhhhHHhHHHHHHHhHHHHHHHHHhh------HHHHHHHhHHHHHHHHHHH
Q 008522 502 NKQSFMRDKIKILESSLNRANIEKAAS------AKEVNHRTKLMMEMVMQLA 547 (563)
Q Consensus 502 eELsflrsk~~~LE~sL~~A~~~K~~T------akdI~~~tK~i~dLv~qLa 547 (563)
++|..+..++..+....+....++... +++-|++..++...+.++.
T Consensus 379 ~~l~~l~~~l~~~~~~~~~~~ke~~~~~~i~~~~~~~g~~~~i~~~~l~~~n 430 (562)
T PHA02562 379 EELAKLQDELDKIVKTKSELVKEKYHRGIVTDLLKDSGIKASIIKKYIPYFN 430 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 888888888888777766666554432 2344455444444444433
No 16
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=97.71 E-value=0.25 Score=61.62 Aligned_cols=311 Identities=18% Similarity=0.205 Sum_probs=172.9
Q ss_pred hhhhHHHhhHHHhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhcccchhchh
Q 008522 226 RELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRES 305 (563)
Q Consensus 226 ~EldLEkkL~~s~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REs 305 (563)
+..-|++.+...+.-...++..| ..++......-+|+=-..|.++.+++.-..+-.|-+.+|..+.-..++=.
T Consensus 655 ~~~~l~e~~~~l~~ev~~ir~~l-------~k~~~~~~fA~ekle~L~~~ie~~K~e~~tL~er~~~l~~~i~~~~q~~~ 727 (1822)
T KOG4674|consen 655 NLKKLQEDFDSLQKEVTAIRSQL-------EKLKNELNLAKEKLENLEKNLELTKEEVETLEERNKNLQSTISKQEQTVH 727 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444333 34555666777888888999999999999999999999988887777777
Q ss_pred HHHHHHHhHHHHHhhhhHHHHHhhhcC----------chhhhhHHHHH-------------------------HHHHHHH
Q 008522 306 ELKSKLGDFIEQLKAKDMVLQKLESTK----------NSEVLTMKEKV-------------------------KSLEEQL 350 (563)
Q Consensus 306 el~sKL~~~~eqL~~k~~~Lekl~~s~----------~SE~~sL~eKv-------------------------~sLEeQL 350 (563)
.+.+-|-.|-+.++.-+..+..|.+.+ ..|+.+|.-.. ..+|.++
T Consensus 728 ~~s~eL~~a~~k~~~le~ev~~LKqE~~ll~~t~~rL~~e~~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~i 807 (1822)
T KOG4674|consen 728 TLSQELLSANEKLEKLEAELSNLKQEKLLLKETEERLSQELEKLSAEQESLQLLLDNLQTQKNELEESEMATKDKCESRI 807 (1822)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888777777776651 12222222222 2223344
Q ss_pred HHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHhhhhhhhHHHHHHHhhhhcCCCCcchhhhhh
Q 008522 351 KESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGIL 430 (563)
Q Consensus 351 kese~Ql~~akas~ea~~~~isdmEn~IedLK~kvskAESRAe~AEskc~lLteTN~EL~eEL~~Lks~~ss~~ek~~~L 430 (563)
++..--++.++-. .+++..++..++.++...+-.|.++.+........+-..+..+...+.-|.. |+.-|
T Consensus 808 ~eL~~el~~lk~k---lq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~-------k~~eL 877 (1822)
T KOG4674|consen 808 KELERELQKLKKK---LQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEI-------KLSEL 877 (1822)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH
Confidence 4433334444433 3445555556666666666666666666666666666555555555555555 36667
Q ss_pred HHHHhhHHHHHHHhHh---hhhhhHHHHHhHHHHHhhHHHHHHHHHHhhhhhhhhchhhhhhhcccccc----hh-----
Q 008522 431 ENQLRDLEIQLQQAKV---SSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSED----NF----- 498 (563)
Q Consensus 431 E~qLkese~QLqhA~A---s~eAs~eqQ~ml~sti~DME~vIedLksKv~kaE~rae~~E~kc~~LsEt----N~----- 498 (563)
+++|+....|...--. .-++... ..++++...=|++|+.++-.+.+....+.+.......+ |.
T Consensus 878 ~k~l~~~~~~~~~l~~~~~~~d~~~~-----~~~Lr~~~eq~~~l~~~L~~a~s~i~~yqe~~~s~eqsl~~~ks~lde~ 952 (1822)
T KOG4674|consen 878 EKRLKSAKTQLLNLDSKSSNEDATIL-----EDTLRKELEEITDLKEELTDALSQIREYQEEYSSLEQSLESVKSELDET 952 (1822)
T ss_pred HHHHHHhHHHHhhccccchhhhhhhh-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777766666554332 2233332 23344555555555555555444444433333222211 11
Q ss_pred ---------hhhhhhhhHHhHHHHHHHhHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 008522 499 ---------ELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVL 558 (563)
Q Consensus 499 ---------eLneELsflrsk~~~LE~sL~~A~~~K~~TakdI~~~tK~i~dLv~qLa~ERErL~~Qis 558 (563)
.+-.++..+|.++..|++........++...+.-..+.--+..-..-+-.|...+..+++
T Consensus 953 ~~~~ea~ie~~~~k~tslE~~ls~L~~~~~~l~~e~~~~~k~~e~~~~~~~~e~~sl~ne~~~~~~~~s 1021 (1822)
T KOG4674|consen 953 RLELEAKIESLHKKITSLEEELSELEKEIENLREELELSTKGKEDKLLDLSREISSLQNELKSLLKAAS 1021 (1822)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHhHHHHHHHHHHHHHHH
Confidence 123455555566666666555555555555444443333222223333345555554444
No 17
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.55 E-value=0.05 Score=63.64 Aligned_cols=218 Identities=22% Similarity=0.278 Sum_probs=143.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHhhhhhhhHHHHHHHhhhh
Q 008522 338 TMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLK 417 (563)
Q Consensus 338 sL~eKv~sLEeQLkese~Ql~~akas~ea~~~~isdmEn~IedLK~kvskAESRAe~AEskc~lLteTN~EL~eEL~~Lk 417 (563)
.+..+.-+|+++|.+.......|-+-.+....+++|.-..||=+--.--=||-||++-.-....|+|-|-+|..+|-.||
T Consensus 273 kim~qqa~Lqrel~raR~e~keaqe~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILK 352 (1243)
T KOG0971|consen 273 KIMEQQADLQRELKRARKEAKEAQEAKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILK 352 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788889999999998887777777777888899888888887777778999999999999999999999999999988
Q ss_pred cC----CCCcchhhhhhH-HHHhhHHHHHHHhH----------------hhhhhhH--------HHHHh-HHHHHhhHHH
Q 008522 418 GN----NDSNTKKVGILE-NQLRDLEIQLQQAK----------------VSSEASQ--------EQQSM-LYSAIWDMET 467 (563)
Q Consensus 418 s~----~ss~~ek~~~LE-~qLkese~QLqhA~----------------As~eAs~--------eqQ~m-l~sti~DME~ 467 (563)
.- |+ ..--.++-+ +||...+..|-.|. +.-++-. .+|.. |...+..||.
T Consensus 353 aEmeekG~-~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs 431 (1243)
T KOG0971|consen 353 AEMEEKGS-DGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAES 431 (1243)
T ss_pred HHHHhcCC-CCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 53 22 000011111 22222222222222 2222211 12222 3336778888
Q ss_pred HHHHHHHhhhhhhhhchhhhhhhcccccchhhhhhhhhhHHhHHHHHHHhH---------------------HHHH----
Q 008522 468 LIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSL---------------------NRAN---- 522 (563)
Q Consensus 468 vIedLksKv~kaE~rae~~E~kc~~LsEtN~eLneELsflrsk~~~LE~sL---------------------~~A~---- 522 (563)
.|-|||..|--|= .||.=...||+.|++|.+-+.-|+--+++||+-- +.|+
T Consensus 432 ~iadlkEQVDAAl----GAE~MV~qLtdknlnlEekVklLeetv~dlEalee~~EQL~Esn~ele~DLreEld~~~g~~k 507 (1243)
T KOG0971|consen 432 TIADLKEQVDAAL----GAEEMVEQLTDKNLNLEEKVKLLEETVGDLEALEEMNEQLQESNRELELDLREELDMAKGARK 507 (1243)
T ss_pred HHHHHHHHHHHhh----cHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 8888888886443 5677788999999999999999998888887521 1110
Q ss_pred ---H---HHHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 008522 523 ---I---EKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVLIL 560 (563)
Q Consensus 523 ---~---~K~~TakdI~~~tK~i~dLv~qLa~ERErL~~Qissl 560 (563)
. .-..|+-|.....+-|.+||.+|-.--+-+..|..|.
T Consensus 508 el~~r~~aaqet~yDrdqTI~KfRelva~Lqdqlqe~~dq~~Ss 551 (1243)
T KOG0971|consen 508 ELQKRVEAAQETVYDRDQTIKKFRELVAHLQDQLQELTDQQESS 551 (1243)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 0 1123344444444556677777777666666665553
No 18
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=97.44 E-value=0.41 Score=55.71 Aligned_cols=315 Identities=22% Similarity=0.281 Sum_probs=177.7
Q ss_pred HHHHHHHHHhhhhhhhHHHhhHHHhhhHHHHHhhhhhhhHHHHHHHHHHHHH--HHHHHhccchHHHHhhhhHHHHhhhh
Q 008522 214 RHILRMLEKSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVV--WGRFLEAENSAEVLMGISKEMLGRFQ 291 (563)
Q Consensus 214 R~iLrMLekSlA~EldLEkkL~~s~~~eeeLk~kL~~~eqe~~~lEE~~~~~--~er~~EAENa~EvL~g~skel~gkLq 291 (563)
..++.|=+-.|+ .||+.|.++..-..-|+-++.-.+.+..++.-..+.. .-++.- |-.+-+.+.+..--.=+.
T Consensus 230 q~~ie~Kd~ki~---~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK--~k~d~~~~eL~rk~~E~~ 304 (775)
T PF10174_consen 230 QTVIEEKDTKIA---SLERMLRDLEDEIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMK--SKMDRLKLELSRKKSELE 304 (775)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHhhHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 356677776665 4777777766666677777766666666663333222 222211 112222222222222223
Q ss_pred HHhhhcccchhchhHHHHHHHhHHHHHhhhhHHHHHhhhcCchhhhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHH
Q 008522 292 IVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQL 371 (563)
Q Consensus 292 ~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~Lekl~~s~~SE~~sL~eKv~sLEeQLkese~Ql~~akas~ea~~~~i 371 (563)
..|..|.....--+|.+..+.-.-++|.+++..-. .|+--|..|--.|.+...++....++.+..+.+.
T Consensus 305 ~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~-----------~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~ 373 (775)
T PF10174_consen 305 ALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAE-----------MLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEK 373 (775)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333334444444444444444333333 3333344444445555555555555555666666
Q ss_pred hhhHHHHHHHHHHHHhhhhhhhhHHHHHhhhhhhh----HHHHHHHhhhhcCCCC-------------------------
Q 008522 372 NEMDNFIESLKESLYGAESRAESAEEKVTQLTDTN----LELSEEINFLKGNNDS------------------------- 422 (563)
Q Consensus 372 sdmEn~IedLK~kvskAESRAe~AEskc~lLteTN----~EL~eEL~~Lks~~ss------------------------- 422 (563)
+.+..-|.+|++.+...+.+....-.++.-|.+++ -+|..+-.-|++++.+
T Consensus 374 ~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~Rl~~~~d~~~~~~~~~~lEea~~eker~~e~l~ 453 (775)
T PF10174_consen 374 SRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKDRQLDEEKERLSSQADSSNEDEALETLEEALREKERLQERLE 453 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666665555554444333 2333333333322110
Q ss_pred -----------------------cchhhhhhHHHHhhHHHHHHHhH---hhhhhhHHHHHhHHHHHhhHHHHHHHHHHhh
Q 008522 423 -----------------------NTKKVGILENQLRDLEIQLQQAK---VSSEASQEQQSMLYSAIWDMETLIEDLKSKV 476 (563)
Q Consensus 423 -----------------------~~ek~~~LE~qLkese~QLqhA~---As~eAs~eqQ~ml~sti~DME~vIedLksKv 476 (563)
..-++.+|++.|.+-++||.-++ .+..++++++ ++-|+.++.-++-.+.|+
T Consensus 454 e~r~~~e~e~~Eele~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~s~l~s~~~K~---~s~i~~l~I~lEk~rek~ 530 (775)
T PF10174_consen 454 EQRERAEKERQEELETYQKELKELKAKLESLQKELSEKELQLEDAKEEASKLASSQEKK---DSEIERLEIELEKKREKH 530 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHhhccchh---hhHHHHHHHHHHHhhhHH
Confidence 13457778888888888877776 2333334544 577888888888888888
Q ss_pred hhhhhhchhh------hhhhcccccchhhhhhhhhhHHhHHHHHHHhHHHHHHHHHhhHHHHHHHhHHHHHHHHHHH
Q 008522 477 SKAESKTESV------EEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLA 547 (563)
Q Consensus 477 ~kaE~rae~~------E~kc~~LsEtN~eLneELsflrsk~~~LE~sL~~A~~~K~~TakdI~~~tK~i~dLv~qLa 547 (563)
.+.++..+.+ -..|..|-..+....++.+-.+..|+.|=..|+.+..+|..+-+.|+--.+.+++.-++++
T Consensus 531 ~kl~~ql~k~~~~~e~~~r~~~Le~ev~~~~ee~~kaq~EVERLl~~L~~~E~EK~~ke~ki~~LekeLek~~~~~~ 607 (775)
T PF10174_consen 531 EKLEKQLEKLRANAELRDRIQQLEQEVTRYREESEKAQAEVERLLDILREAENEKNDKEKKIGELEKELEKAQMHLA 607 (775)
T ss_pred HHHHHHHHHHHhCHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhccchh
Confidence 8887776552 1233444444455555666667888999999999999999998888887777655444443
No 19
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=97.34 E-value=0.4 Score=53.32 Aligned_cols=114 Identities=25% Similarity=0.317 Sum_probs=89.4
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHhhhhhhhHHHHHH
Q 008522 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEE 412 (563)
Q Consensus 333 ~SE~~sL~eKv~sLEeQLkese~Ql~~akas~ea~~~~isdmEn~IedLK~kvskAESRAe~AEskc~lLteTN~EL~eE 412 (563)
++++..+.+++......|...+ +..+.+..+....+|.+|-.+++.=......++............+.+.|.+|..|
T Consensus 255 ~~~i~~l~~~i~~~~~~l~~l~--l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~E 332 (569)
T PRK04778 255 EKEIQDLKEQIDENLALLEELD--LDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEE 332 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 5666677766666666665543 46677777778889999999999988888999999999999999999999999999
Q ss_pred HhhhhcC---CCCcchhhhhhHHHHhhHHHHHHHhHhhh
Q 008522 413 INFLKGN---NDSNTKKVGILENQLRDLEIQLQQAKVSS 448 (563)
Q Consensus 413 L~~Lks~---~ss~~ek~~~LE~qLkese~QLqhA~As~ 448 (563)
+..|+-+ .....+.+..++++|+..+.++......+
T Consensus 333 i~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i 371 (569)
T PRK04778 333 IDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERI 371 (569)
T ss_pred HHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999887 12246678888888888877777555333
No 20
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=97.30 E-value=0.15 Score=59.29 Aligned_cols=271 Identities=20% Similarity=0.264 Sum_probs=156.8
Q ss_pred HHHHHHHHHHHhccchHHHHhhhhHHHHhhhh---------HHhhhcccchhchhHHHHHHHhHHHHHhhhhHHHHHhhh
Q 008522 260 EAAEVVWGRFLEAENSAEVLMGISKEMLGRFQ---------IVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLES 330 (563)
Q Consensus 260 E~~~~~~er~~EAENa~EvL~g~skel~gkLq---------~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~Lekl~~ 330 (563)
+.+++.--|.+.|+|...=|+..=..+..++= +++.+=+-+-+-+.-++.-.--.+++|.+.++.+--|.-
T Consensus 34 es~edlk~r~L~aeniiqdlrserdalhe~lvdkaglneSviie~sk~vstqetriyRrdv~llEddlk~~~sQiriLQn 113 (1265)
T KOG0976|consen 34 ESHEDLKKRLLDAENIIQDLRSERDALHESLVDKAGLNESVIIEQSKKVSTQETRIYRRDVNLLEDDLKHHESQIRILQN 113 (1265)
T ss_pred cchHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhhhcchhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 45666777888888888877766555555442 112222222222222222222233344443333333333
Q ss_pred c---CchhhhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHh----hhHHHHHHHHHHHHhhhhhhhhHHHHHhhhh
Q 008522 331 T---KNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLN----EMDNFIESLKESLYGAESRAESAEEKVTQLT 403 (563)
Q Consensus 331 s---~~SE~~sL~eKv~sLEeQLkese~Ql~~akas~ea~~~~is----dmEn~IedLK~kvskAESRAe~AEskc~lLt 403 (563)
+ ..+|-++|++-+.-++.++|+.+..+.+..+........++ +.-.+-++|+ .+|+.||
T Consensus 114 ~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf~~~~~L~--------------nk~~~lt 179 (1265)
T KOG0976|consen 114 KCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIFMIGEDLH--------------DKNEELN 179 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHh--------------hhhhHHh
Confidence 2 46888899999999999999999988888877655544444 3333344444 5789999
Q ss_pred hhhHHHHHHHhhhhcCCCCcchhhhhhHHHHhhHHHHHH-HhHhhhhhhH---HHHHhHHH---------HHhhHH---H
Q 008522 404 DTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQ-QAKVSSEASQ---EQQSMLYS---------AIWDME---T 467 (563)
Q Consensus 404 eTN~EL~eEL~~Lks~~ss~~ek~~~LE~qLkese~QLq-hA~As~eAs~---eqQ~ml~s---------ti~DME---~ 467 (563)
+-|.|++..+..--.- -+.||..++.++.-+- .-.-+-+-++ .-|+.+.. ++--+- +
T Consensus 180 ~~~~q~~tkl~e~~~e-------n~~le~k~~k~~e~~~~nD~~sle~~~~q~~tq~vl~ev~QLss~~q~ltp~rk~~s 252 (1265)
T KOG0976|consen 180 EFNMEFQTKLAEANRE-------KKALEEKLEKFKEDLIEKDQKSLELHKDQENTQKVLKEVMQLSSQKQTLTPLRKTCS 252 (1265)
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhhhhH
Confidence 9999988866543221 1233333333221110 0000111111 11111111 111111 2
Q ss_pred HHHHHHHhhhhhhhhchhhhhhhcccccchhhhhhhhhhHHhHHHHHHHhHHHHHHHHHhhHHHHHHHhHHHHHHHHHHH
Q 008522 468 LIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLA 547 (563)
Q Consensus 468 vIedLksKv~kaE~rae~~E~kc~~LsEtN~eLneELsflrsk~~~LE~sL~~A~~~K~~TakdI~~~tK~i~dLv~qLa 547 (563)
+|+++ +--.+--|+-.+++---|--.|.-|..|+|-..-+++.++.-|+.....-....-|+.-.||++.--+|+|.
T Consensus 253 ~i~E~---d~~lq~sak~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gdseqatkylh~enmklt 329 (1265)
T KOG0976|consen 253 MIEEQ---DMDLQASAKEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQTRTRADGDSEQATKYLHLENMKLT 329 (1265)
T ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHH
Confidence 22222 222222344555666667778999999999999999999999999988888888899999999999899888
Q ss_pred HHHHHHH
Q 008522 548 TQRELIQ 554 (563)
Q Consensus 548 ~ERErL~ 554 (563)
.+.--|+
T Consensus 330 rqkadir 336 (1265)
T KOG0976|consen 330 RQKADIR 336 (1265)
T ss_pred HHHHHHH
Confidence 7755444
No 21
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=97.30 E-value=0.97 Score=56.75 Aligned_cols=294 Identities=21% Similarity=0.248 Sum_probs=154.0
Q ss_pred HHHHHHhh-----------hhhhhHHHhhHHHhhhHHHHHhhhhhhhHHHHHHHHHHHHHH----------HHHHhccch
Q 008522 217 LRMLEKSL-----------ARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVW----------GRFLEAENS 275 (563)
Q Consensus 217 LrMLekSl-----------A~EldLEkkL~~s~~~eeeLk~kL~~~eqe~~~lEE~~~~~~----------er~~EAENa 275 (563)
+.||++.| +|--+|..-+..-.+....+...|++...-...++-.+..+- .|+.--
T Consensus 691 le~L~~~ie~~K~e~~tL~er~~~l~~~i~~~~q~~~~~s~eL~~a~~k~~~le~ev~~LKqE~~ll~~t~~rL~~e--- 767 (1822)
T KOG4674|consen 691 LENLEKNLELTKEEVETLEERNKNLQSTISKQEQTVHTLSQELLSANEKLEKLEAELSNLKQEKLLLKETEERLSQE--- 767 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 66666665 555667777888788888888888888777777766555432 222211
Q ss_pred HHHHhhhhHHHHhhhhHHhhhcccchhchhHHHHHHHhHHHHHhhhhHHHHHhhhcCchhhhhHHHHHHHHHHHHHHHHH
Q 008522 276 AEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEI 355 (563)
Q Consensus 276 ~EvL~g~skel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~Lekl~~s~~SE~~sL~eKv~sLEeQLkese~ 355 (563)
.+-|...-..++..+-.+|+..+-...-+...+.++++-++.|. ..|.++...-..+..-+.+=-..+..+|+.+..
T Consensus 768 ~~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~i~eL~---~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~ 844 (1822)
T KOG4674|consen 768 LEKLSAEQESLQLLLDNLQTQKNELEESEMATKDKCESRIKELE---RELQKLKKKLQEKSSDLRELTNSLEKQLENAQN 844 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 12222333344444445555555555566677777666555555 444444442011111122222233444444443
Q ss_pred HHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHhhhhhh----------------hHHHHHHHhhhhcC
Q 008522 356 RLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDT----------------NLELSEEINFLKGN 419 (563)
Q Consensus 356 Ql~~akas~ea~~~~isdmEn~IedLK~kvskAESRAe~AEskc~lLteT----------------N~EL~eEL~~Lks~ 419 (563)
+ +.+|..-+..++..+..++++.+..+.+...|..- |.....-...||-
T Consensus 845 ~--------------i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k~l~~~~~~~~~l~~~~~~~d~~~~~~~Lr~- 909 (1822)
T KOG4674|consen 845 L--------------VDELESELKSLLTSLDSVSTNIAKLEIKLSELEKRLKSAKTQLLNLDSKSSNEDATILEDTLRK- 909 (1822)
T ss_pred H--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhccccchhhhhhhhhHHHHH-
Confidence 3 33444445555555555555555555554433211 2222222222222
Q ss_pred CCCcchhhhhhHHHHhhHHHHHHHhHhhhhhhHH-----HHHhHHHHHhhHHHHHHHHHHhhhhhhhhchhhhhhhcccc
Q 008522 420 NDSNTKKVGILENQLRDLEIQLQQAKVSSEASQE-----QQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLS 494 (563)
Q Consensus 420 ~ss~~ek~~~LE~qLkese~QLqhA~As~eAs~e-----qQ~ml~sti~DME~vIedLksKv~kaE~rae~~E~kc~~Ls 494 (563)
..++...|..+|+.+..+..+-++.....-. +. -+-.+-.+.+.=|+.+..|+.-.|.+.-.++..|+-|.
T Consensus 910 ---~~eq~~~l~~~L~~a~s~i~~yqe~~~s~eqsl~~~ks-~lde~~~~~ea~ie~~~~k~tslE~~ls~L~~~~~~l~ 985 (1822)
T KOG4674|consen 910 ---ELEEITDLKEELTDALSQIREYQEEYSSLEQSLESVKS-ELDETRLELEAKIESLHKKITSLEEELSELEKEIENLR 985 (1822)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2344555555555555444443332222210 00 01123455556666666666666655444555555554
Q ss_pred -----------cchhhhhhhhhhHHhHHHHHHHhHHHHHHHHHhhHHHHHHH
Q 008522 495 -----------EDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHR 535 (563)
Q Consensus 495 -----------EtN~eLneELsflrsk~~~LE~sL~~A~~~K~~TakdI~~~ 535 (563)
..++.+..+++.++.-++++.....+|+..-...-.|+..-
T Consensus 986 ~e~~~~~k~~e~~~~~~~~e~~sl~ne~~~~~~~~s~~~~~~~~~k~dl~~~ 1037 (1822)
T KOG4674|consen 986 EELELSTKGKEDKLLDLSREISSLQNELKSLLKAASQANEQIEDLQNDLKTE 1037 (1822)
T ss_pred HHHhccccchhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34888889999999999998888888876554444455444
No 22
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.19 E-value=0.72 Score=57.12 Aligned_cols=63 Identities=10% Similarity=0.077 Sum_probs=36.7
Q ss_pred cccccchHHHHHHHHHHHHhhhhhhhHHHhhHHHhhhHHHHHhhhhhhhHHHHHHHHHHHHHH
Q 008522 204 KSKMKNADQQRHILRMLEKSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVW 266 (563)
Q Consensus 204 ~~~mqt~eqqR~iLrMLekSlA~EldLEkkL~~s~~~eeeLk~kL~~~eqe~~~lEE~~~~~~ 266 (563)
--=|.+++++|.++-=.=+-=.+--.-.++|.....+-.++...+...+.....|+..+...-
T Consensus 272 ad~~r~~eERR~liEEAag~r~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~ 334 (1486)
T PRK04863 272 ADYMRHANERRVHLEEALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAAS 334 (1486)
T ss_pred HHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333889998888764432212333444555556666666666666666666666666555543
No 23
>PRK03918 chromosome segregation protein; Provisional
Probab=97.15 E-value=0.74 Score=52.52 Aligned_cols=12 Identities=8% Similarity=0.556 Sum_probs=6.7
Q ss_pred hhhhHHhHHHHH
Q 008522 105 LDSELREVERLL 116 (563)
Q Consensus 105 ldSEv~Ele~~~ 116 (563)
++..+..++..+
T Consensus 174 ~~~~~~~l~~~l 185 (880)
T PRK03918 174 IKRRIERLEKFI 185 (880)
T ss_pred HHHHHHHHHHHH
Confidence 555555555555
No 24
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=97.07 E-value=0.00013 Score=83.91 Aligned_cols=203 Identities=25% Similarity=0.327 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHhhhhhhhHHHHHHHhhhhcCCC
Q 008522 342 KVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNND 421 (563)
Q Consensus 342 Kv~sLEeQLkese~Ql~~akas~ea~~~~isdmEn~IedLK~kvskAESRAe~AEskc~lLteTN~EL~eEL~~Lks~~s 421 (563)
.++-+..|++++..++..+....+.....+..++.-+..|...+..+.+..++|+--+..+...-.++.++++.|..+++
T Consensus 575 ~~kk~q~qlkdlq~~lee~~~~~~~~~~~~~~~e~r~~~l~~elee~~~~~~~a~r~rk~aE~el~e~~~~~~~l~~~~~ 654 (859)
T PF01576_consen 575 QLKKLQAQLKDLQRELEEAQRAREELREQLAVSERRLRALQAELEELREALEQAERARKQAESELDELQERLNELTSQNS 654 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 34445555555555555555555555555555555555566666666666666666666666666777777887776655
Q ss_pred CcchhhhhhHHHHhhHHHHHHHhHhh------------hhhhHH------HHH---hHHHHHhhHHHHHHHHHHhhhhhh
Q 008522 422 SNTKKVGILENQLRDLEIQLQQAKVS------------SEASQE------QQS---MLYSAIWDMETLIEDLKSKVSKAE 480 (563)
Q Consensus 422 s~~ek~~~LE~qLkese~QLqhA~As------------~eAs~e------qQ~---ml~sti~DME~vIedLksKv~kaE 480 (563)
+...-...||..+..++.+|+.+... +.+... .|. -+-+.=+.||.-|.||+.++..+|
T Consensus 655 ~l~~~kr~le~~i~~l~~eleE~~~~~~~~~ek~kka~~~~~~l~~eL~~Eq~~~~~le~~k~~LE~q~keLq~rl~e~E 734 (859)
T PF01576_consen 655 SLSEEKRKLEAEIQQLEEELEEEQSEAEAAEEKAKKAQAQAAQLAEELRQEQDHNQHLEKEKKALERQVKELQARLEEAE 734 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445556777777777777766522 222221 011 011233456678888999888888
Q ss_pred hhchhhhhhhcccccchhhhhhhhhhHHhHHHHHHHhHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHH---HHHHHHH
Q 008522 481 SKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQR---ELIQKQV 557 (563)
Q Consensus 481 ~rae~~E~kc~~LsEtN~eLneELsflrsk~~~LE~sL~~A~~~K~~TakdI~~~tK~i~dLv~qLa~ER---ErL~~Qi 557 (563)
+- +++.. ..-++.|.+|+..||+.|..-.-.+..+.+-+--.-+-+++|+.|.-.+| ++++.++
T Consensus 735 ~~---------~~~~~----k~~i~kLE~ri~eLE~~Le~E~r~~~~~~k~~rk~er~~kEl~~q~ee~~k~~~~~~d~~ 801 (859)
T PF01576_consen 735 QS---------ALKGG----KKQIAKLEARIRELEEELESEQRRRAEAQKQLRKLERRVKELQFQVEEERKNAERLQDLV 801 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred Hh---------hhccc----ccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHH
Confidence 44 23221 23578899999999999999999999999999988999999999998888 3444443
No 25
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=97.04 E-value=0.014 Score=54.55 Aligned_cols=128 Identities=31% Similarity=0.362 Sum_probs=90.7
Q ss_pred HHHHHHHHhhhhhhhhHHHHHhhhhhhhHHHHHHHhhhhcCCCCcchhhhhhHHHHhhHHHHHHHhHhhhhhhHHHHH--
Q 008522 379 ESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQS-- 456 (563)
Q Consensus 379 edLK~kvskAESRAe~AEskc~lLteTN~EL~eEL~~Lks~~ss~~ek~~~LE~qLkese~QLqhA~As~eAs~eqQ~-- 456 (563)
..||-....|..|++.++++++.|...|.++..++..|.. |...||.+|-.++.+|..++..++.+-...+
T Consensus 3 ~~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~-------K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~ 75 (143)
T PF12718_consen 3 QALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQK-------KNQQLEEELDKLEEQLKEAKEKLEESEKRKSNA 75 (143)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhH
Confidence 4678889999999999999999999999999999999987 5899999999999999999977776642111
Q ss_pred -hHHHHHhhHH-------HHHHHHHHhhhhhhhhchhhhhhhcccccchhhhhhhhhhHHhHHHHHHHhHHH
Q 008522 457 -MLYSAIWDME-------TLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNR 520 (563)
Q Consensus 457 -ml~sti~DME-------~vIedLksKv~kaE~rae~~E~kc~~LsEtN~eLneELsflrsk~~~LE~sL~~ 520 (563)
-|-..|.-|| .-..+...|+..+..+|+++|-++..|-..... +..|++.|+.++..
T Consensus 76 E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~-------~E~k~eel~~k~~~ 140 (143)
T PF12718_consen 76 EQLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQ-------WEEKYEELEEKYKE 140 (143)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHH-------HHHHHHHHHHHHHH
Confidence 1222333333 344445556666666666666666655544444 55555555554443
No 26
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.04 E-value=1.3 Score=53.52 Aligned_cols=282 Identities=18% Similarity=0.177 Sum_probs=158.7
Q ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhh-----HHHHhhhhHHhhhcccchhchhHHHHHHH-hHHHHH
Q 008522 245 KLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGIS-----KEMLGRFQIVQFNLNGSLQRESELKSKLG-DFIEQL 318 (563)
Q Consensus 245 k~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~s-----kel~gkLq~~qf~L~as~~REsel~sKL~-~~~eqL 318 (563)
.-++.+++.|+..||..-.. ...|+..||-+=.+++.. -+...|+-..+..+.+..--.-+...|.. .+-+..
T Consensus 287 ~~~~k~~e~ek~~lE~~k~~-al~fL~kenel~~~~~~~~q~~~~~~~~ki~~~~~~~~~~~e~lk~~~ek~~~e~~~~~ 365 (1293)
T KOG0996|consen 287 ENRVKLVEKEKKALEGPKNE-ALEFLKKENELFRKKNKLCQYILYESRAKIAEMQEELEKIEEGLKDENEKFDIESNEEV 365 (1293)
T ss_pred HHHHHHHHHHHHHHhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHH
Confidence 34455678888888876554 456888888655444432 22333444444444333222222222222 111100
Q ss_pred ---hhhhHHHHHhhhcCchhhhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhH
Q 008522 319 ---KAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESA 395 (563)
Q Consensus 319 ---~~k~~~Lekl~~s~~SE~~sL~eKv~sLEeQLkese~Ql~~akas~ea~~~~isdmEn~IedLK~kvskAESRAe~A 395 (563)
++.+..+......-...+-++..|.+.+|.+=..-+.++.+ +..++.-++--|+..+.+++.+|+--+.+
T Consensus 366 ~k~e~~~~~~~e~~~~~kn~~~~~k~~~~~~e~~~vk~~E~lK~-------~~~k~kKleke~ek~~~~~~e~e~~pe~~ 438 (1293)
T KOG0996|consen 366 EKNEAVKKEIKERAKELKNKFESLKKKFQDLEREDVKREEKLKR-------LTSKIKKLEKEIEKARRKKSELEKAPEKA 438 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhHHHHHhCchhh
Confidence 11111111111111224445555555555544444444433 33344455555555555555555544444
Q ss_pred HHHHhhhh-----------hhhHHHHHHHhhhhcCCCCcchhhhhhHHHHhhHHHHHHHhHhhhhhhHHHHHhHHHHHhh
Q 008522 396 EEKVTQLT-----------DTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWD 464 (563)
Q Consensus 396 Eskc~lLt-----------eTN~EL~eEL~~Lks~~ss~~ek~~~LE~qLkese~QLqhA~As~eAs~eqQ~ml~sti~D 464 (563)
.-....+. ..|-+|.+.+..|+.......++...+|+.|.-...|+..|++-..-...+-.+|.++..+
T Consensus 439 ~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~ 518 (1293)
T KOG0996|consen 439 RIEIQKCQTEIEQLEELLEKEERELDEILDSLKQETEGIREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHET 518 (1293)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43333333 3455555566677766554577888899999999999999988877777666666666666
Q ss_pred HHHHHHHHHHhhhhhhhhchhhhhhhcccccchhhhhhhhhhHHhHHHHHHHhHHHHHHHHHhhHHHHHHHhHHHHHHHH
Q 008522 465 METLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVM 544 (563)
Q Consensus 465 ME~vIedLksKv~kaE~rae~~E~kc~~LsEtN~eLneELsflrsk~~~LE~sL~~A~~~K~~TakdI~~~tK~i~dLv~ 544 (563)
.-.-+++||+++....+ ++-+ -+..+.++...|..-+.+...-.|++...++....+.+
T Consensus 519 ~~~~~e~lk~~L~~~~~--------------~~~e-------~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~ 577 (1293)
T KOG0996|consen 519 GLKKVEELKGKLLASSE--------------SLKE-------KKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKS 577 (1293)
T ss_pred HHHHHHHHHHHHHHHHH--------------HHHH-------HHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 66667777777775553 2334 33344555566666666666677788888888888888
Q ss_pred HHHHHHHHHHH
Q 008522 545 QLATQRELIQK 555 (563)
Q Consensus 545 qLa~ERErL~~ 555 (563)
|+..=|+|+..
T Consensus 578 ~~~~~rqrveE 588 (1293)
T KOG0996|consen 578 QLNKLRQRVEE 588 (1293)
T ss_pred HHHHHHHHHHH
Confidence 88887777643
No 27
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=96.87 E-value=1.5 Score=51.34 Aligned_cols=145 Identities=25% Similarity=0.329 Sum_probs=98.9
Q ss_pred CchhhhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHhhhhhhhHHHHH
Q 008522 332 KNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSE 411 (563)
Q Consensus 332 ~~SE~~sL~eKv~sLEeQLkese~Ql~~akas~ea~~~~isdmEn~IedLK~kvskAESRAe~AEskc~lLteTN~EL~e 411 (563)
+++|..+++-|+..++++..++...+.-.+.+.-+-+.+-+-+.+-|+.|..++..+.+-.......+.-+.+-=.-+..
T Consensus 299 k~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~ 378 (775)
T PF10174_consen 299 KKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQG 378 (775)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777777777777777776667767777666666666666667777766666666666666555555555555555
Q ss_pred HHhhhhcCCCC-------cchhhhhhHHHHhhHHHHHHHhHhhhhh----h--HHHHHhHHHHHhhHHHHHHHHHHhh
Q 008522 412 EINFLKGNNDS-------NTKKVGILENQLRDLEIQLQQAKVSSEA----S--QEQQSMLYSAIWDMETLIEDLKSKV 476 (563)
Q Consensus 412 EL~~Lks~~ss-------~~ek~~~LE~qLkese~QLqhA~As~eA----s--~eqQ~ml~sti~DME~vIedLksKv 476 (563)
||..|++.-.. .-.|.+.||.+|++-+.||..++...-+ . ..-+.-|..++.|-+.+|+.|...-
T Consensus 379 Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~Rl~~~~d~~~~~~~~~~lEea~~eker~~e~l~e~r 456 (775)
T PF10174_consen 379 EIEDLRDMLDKKERKINVLQKKIENLEEQLREKDRQLDEEKERLSSQADSSNEDEALETLEEALREKERLQERLEEQR 456 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666665221 2346788999999999999888854442 1 1234557779999999999987543
No 28
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=96.85 E-value=1.9 Score=52.21 Aligned_cols=203 Identities=22% Similarity=0.296 Sum_probs=111.8
Q ss_pred hHHHHHHHHHHHHhhhhhhh-----HHHhhHHHhhhHHHHHhhhhhh---hHH---HHHHHHHHHHHHHHHHhccchHHH
Q 008522 210 ADQQRHILRMLEKSLARELD-----LEKKISELNQNEEQLKLKLHHT---EQV---AFRMEEAAEVVWGRFLEAENSAEV 278 (563)
Q Consensus 210 ~eqqR~iLrMLekSlA~Eld-----LEkkL~~s~~~eeeLk~kL~~~---eqe---~~~lEE~~~~~~er~~EAENa~Ev 278 (563)
-++.++-++-|+..+..+.. +.........-...++..+++. +++ ....+.+.+..-+..-.+.+....
T Consensus 415 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~e~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 494 (1201)
T PF12128_consen 415 REQIEEEYQALEQELRQQSQEQLEELQEQREQLKSELAELKQQLKNPQYTEEEKEQLEQADKRLEQAQEQQNQAQQAVEE 494 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777778777765433 1112222222233344444432 222 222333334444555556666666
Q ss_pred HhhhhHHHHhhhhHHhhhcccchhchhHHHHHHHhHHHHHhh-hhHHHHHhhhc--------------------------
Q 008522 279 LMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKA-KDMVLQKLEST-------------------------- 331 (563)
Q Consensus 279 L~g~skel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~-k~~~Lekl~~s-------------------------- 331 (563)
+......+....+..+..|.....+=.+++..+.....+|.. +++-++=|...
T Consensus 495 ~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L~p~~gSL~~fL~~~~p~We~tIGKVid~eLL~r~dL~P~l 574 (1201)
T PF12128_consen 495 LQAEEQELRKERDQAEEELRQARRELEELRAQIAELQRQLDPQKGSLLEFLRKNKPGWEQTIGKVIDEELLYRTDLEPQL 574 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHhCCCcHHHHhHhhCCHHHhcCCCCCCee
Confidence 666677777777777777777766666777777777777763 22222222211
Q ss_pred -------------------CchhhhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhhh
Q 008522 332 -------------------KNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRA 392 (563)
Q Consensus 332 -------------------~~SE~~sL~eKv~sLEeQLkese~Ql~~akas~ea~~~~isdmEn~IedLK~kvskAESRA 392 (563)
..|+....-+ .|+.++...+.+++.+....++.+..+......++.++..+..|+...
T Consensus 575 ~~~~~~dslyGl~LdL~~I~~pd~~~~ee---~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~ 651 (1201)
T PF12128_consen 575 VEDSGSDSLYGLSLDLSAIDVPDYAASEE---ELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQEL 651 (1201)
T ss_pred cCCCcccccceeEeehhhcCCchhhcChH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1132221111 455555555555555555555556666666677777777777777777
Q ss_pred hhHHHHHhhhhhhhHHHHHHHhh
Q 008522 393 ESAEEKVTQLTDTNLELSEEINF 415 (563)
Q Consensus 393 e~AEskc~lLteTN~EL~eEL~~ 415 (563)
.+++.+...|-.--..+..++..
T Consensus 652 ~~~~~~~~~l~~~~~~~~~~~~~ 674 (1201)
T PF12128_consen 652 KQAEQDLQRLKNEREQLKQEIEE 674 (1201)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHH
Confidence 77777766666555555554433
No 29
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=96.76 E-value=0.46 Score=47.90 Aligned_cols=52 Identities=13% Similarity=0.330 Sum_probs=23.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHH-------HHhhhHHHHHHHHHHHHh
Q 008522 336 VLTMKEKVKSLEEQLKESEIRLQNANACFQTSQE-------QLNEMDNFIESLKESLYG 387 (563)
Q Consensus 336 ~~sL~eKv~sLEeQLkese~Ql~~akas~ea~~~-------~isdmEn~IedLK~kvsk 387 (563)
...|+..|..+-..-...+.++.++...++.+.. ...+|+.-|..|+..+..
T Consensus 56 l~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~ 114 (312)
T PF00038_consen 56 LRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDE 114 (312)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 3344444444444444444444444444433322 334555555555544443
No 30
>PLN02939 transferase, transferring glycosyl groups
Probab=96.63 E-value=0.067 Score=63.25 Aligned_cols=189 Identities=24% Similarity=0.358 Sum_probs=115.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhhh-hchhhhHHHHhhhHHHHHHHHHHHHhhhh----hhhhHHHHHhhhhhhhHHH
Q 008522 335 EVLTMKEKVKSLEEQLKESEIRLQNAN-ACFQTSQEQLNEMDNFIESLKESLYGAES----RAESAEEKVTQLTDTNLEL 409 (563)
Q Consensus 335 E~~sL~eKv~sLEeQLkese~Ql~~ak-as~ea~~~~isdmEn~IedLK~kvskAES----RAe~AEskc~lLteTN~EL 409 (563)
|--.|+-||+.||-.|.+.+.++.-+. +... .+ -+|.-.+.|...+..-.. -...-..++..|-+.|+-|
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (977)
T PLN02939 164 EKEALQGKINILEMRLSETDARIKLAAQEKIH---VE--ILEEQLEKLRNELLIRGATEGLCVHSLSKELDVLKEENMLL 238 (977)
T ss_pred HHHHHHhhHHHHHHHhhhhhhhhhhhhhcccc---ch--hhHHHHHHHhhhhhccccccccccccHHHHHHHHHHHhHHH
Confidence 334788899999999999988864322 2210 01 112222333332222111 1112245788999999999
Q ss_pred HHHHhhhhcCCCC---cchhh-------hhhHHHHhhHHHHHHHhHhhhhh-hHHHHHhHHHHHhhHHHHHHHHHHhhhh
Q 008522 410 SEEINFLKGNNDS---NTKKV-------GILENQLRDLEIQLQQAKVSSEA-SQEQQSMLYSAIWDMETLIEDLKSKVSK 478 (563)
Q Consensus 410 ~eEL~~Lks~~ss---~~ek~-------~~LE~qLkese~QLqhA~As~eA-s~eqQ~ml~sti~DME~vIedLksKv~k 478 (563)
+..+.|||...+. +.+++ ..|+..|++++..+--|.+-+-. +-.|..-++.++..++.+.+-...++.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 317 (977)
T PLN02939 239 KDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESKFIVAQEDVSKLSPLQYDCWWEKVENLQDLLDRATNQVE- 317 (977)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 9999999987442 23333 34555666666555333222111 113444456666666666655554443
Q ss_pred hhhhchhhhhhhcccccchhhhhhhhhhHHhHHHHHHHhHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 008522 479 AESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQ 554 (563)
Q Consensus 479 aE~rae~~E~kc~~LsEtN~eLneELsflrsk~~~LE~sL~~A~~~K~~TakdI~~~tK~i~dLv~qLa~ERErL~ 554 (563)
+.+++...|-+ |+.|+..||++|.+|+..|.++- .|+-|-.++...++||+
T Consensus 318 ----------~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~ 368 (977)
T PLN02939 318 ----------KAALVLDQNQD-------LRDKVDKLEASLKEANVSKFSSY--------KVELLQQKLKLLEERLQ 368 (977)
T ss_pred ----------HHHHHhccchH-------HHHHHHHHHHHHHHhhHhhhhHH--------HHHHHHHHHHHHHHHHH
Confidence 34566777877 89999999999999999998654 44555577777777765
No 31
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=96.60 E-value=0.96 Score=45.64 Aligned_cols=244 Identities=18% Similarity=0.237 Sum_probs=130.1
Q ss_pred HHHhhHHHhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhcccchhchhHHHH
Q 008522 230 LEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKS 309 (563)
Q Consensus 230 LEkkL~~s~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~s 309 (563)
++..+.+.|....++...-...+-+...+...+..+-.||-+.-.....+. .-+..+.-++......=.++..
T Consensus 52 ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le-------~el~~lrk~ld~~~~~r~~le~ 124 (312)
T PF00038_consen 52 YEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLE-------EELESLRKDLDEETLARVDLEN 124 (312)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH-------HHHhhhhhhhhhhhhhHhHHHH
Confidence 344455566666666665566666677777777777666666533322222 2223333444444444455666
Q ss_pred HHHhHHHHHhhhhHH----HHHhhhc----CchhhhhHHHHHHHHHHHHH----HHHHHHhhhhhchhhhHHHHhhhHHH
Q 008522 310 KLGDFIEQLKAKDMV----LQKLEST----KNSEVLTMKEKVKSLEEQLK----ESEIRLQNANACFQTSQEQLNEMDNF 377 (563)
Q Consensus 310 KL~~~~eqL~~k~~~----Lekl~~s----~~SE~~sL~eKv~sLEeQLk----ese~Ql~~akas~ea~~~~isdmEn~ 377 (563)
++....++|...... +..|... ...++-. -.-..|..-|+ +|+..+...+...++ .+..-
T Consensus 125 ~i~~L~eEl~fl~~~heeEi~~L~~~~~~~~~~e~~~--~~~~dL~~~L~eiR~~ye~~~~~~~~e~e~------~y~~k 196 (312)
T PF00038_consen 125 QIQSLKEELEFLKQNHEEEIEELREQIQSSVTVEVDQ--FRSSDLSAALREIRAQYEEIAQKNREELEE------WYQSK 196 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSTT------------------HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhccccccceeecc--cccccchhhhhhHHHHHHHHHhhhhhhhhh------hcccc
Confidence 666666666543221 1111111 0011100 00011222222 333333333333322 22333
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHhhhhhhhHHHHHHHhhhhcCCCCcchhhhhhHHHHhhHHHHHHHhHhhhhhhHHHHHh
Q 008522 378 IESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSM 457 (563)
Q Consensus 378 IedLK~kvskAESRAe~AEskc~lLteTN~EL~eEL~~Lks~~ss~~ek~~~LE~qLkese~QLqhA~As~eAs~eqQ~m 457 (563)
+.+++..+..+.+.+..+...+.-+...=..|..+|..|++. -..||++|.+.+.++.... ..
T Consensus 197 ~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~-------~~~Le~~l~~le~~~~~~~----------~~ 259 (312)
T PF00038_consen 197 LEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAK-------NASLERQLRELEQRLDEER----------EE 259 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH----------HH
T ss_pred cccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccc-------hhhhhhhHHHHHHHHHHHH----------HH
Confidence 455555555555555555555555555556777778888874 6788888888765444222 12
Q ss_pred HHHHHhhHHHHHHHHHHhhhhhhhhchhhhhhhcccccchhhhhhhhhhHHhHHH
Q 008522 458 LYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIK 512 (563)
Q Consensus 458 l~sti~DME~vIedLksKv~kaE~rae~~E~kc~~LsEtN~eLneELsflrsk~~ 512 (563)
+-..|.++|.-|.+++..+...-.. +-.|-+.++-|..||+-||.=++
T Consensus 260 ~~~~i~~le~el~~l~~~~~~~~~e-------y~~Ll~~K~~Ld~EIatYR~LLE 307 (312)
T PF00038_consen 260 YQAEIAELEEELAELREEMARQLRE-------YQELLDVKLALDAEIATYRKLLE 307 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhhhccchhHHHHHHHHHHHHHH-------HHHHHHHHHhHHHHHHHHHHHHh
Confidence 3345666666666666666554443 88899999999999999997665
No 32
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=96.59 E-value=0.00054 Score=79.08 Aligned_cols=202 Identities=19% Similarity=0.238 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhh-------hchhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHhhhhhhhHH
Q 008522 336 VLTMKEKVKSLEEQLKESEIRLQNAN-------ACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLE 408 (563)
Q Consensus 336 ~~sL~eKv~sLEeQLkese~Ql~~ak-------as~ea~~~~isdmEn~IedLK~kvskAESRAe~AEskc~lLteTN~E 408 (563)
+-...-.+..||+..+..+.++...+ +..++++.+...+++-|-.|+..+..+ ...+..|...|-.
T Consensus 365 Le~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~~~Lk~~lee~-------~e~~e~lere~k~ 437 (859)
T PF01576_consen 365 LEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQREARELETELFKLKNELEEL-------QEQLEELERENKQ 437 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHH-------HHHHHHHHHHHHH
Confidence 33334444455555555555544444 444445555555555555555555444 4445556677888
Q ss_pred HHHHHhhhhcCCCCcchhhhhhHHHHhhHHHHHHHhH-------hhhhhhHHHHHhHH--HHHhhHHHHHHHHHHhhhhh
Q 008522 409 LSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAK-------VSSEASQEQQSMLY--SAIWDMETLIEDLKSKVSKA 479 (563)
Q Consensus 409 L~eEL~~Lks~~ss~~ek~~~LE~qLkese~QLqhA~-------As~eAs~eqQ~ml~--sti~DME~vIedLksKv~ka 479 (563)
|..+|..|.++.+....-+..||+..+.++.++.+.. ++..+- .+..+. ..|.+|-. ++.-.+..-
T Consensus 438 L~~El~dl~~q~~~~~k~v~eLek~kr~LE~e~~El~~~leE~E~~l~~~--E~~~lRl~~el~~~r~---e~er~l~eK 512 (859)
T PF01576_consen 438 LQDELEDLTSQLDDAGKSVHELEKAKRRLEQEKEELQEQLEEAEDALEAE--EQKKLRLQVELQQLRQ---EIERELQEK 512 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhhccchhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH---HHHHHHHhh
Confidence 8888888887754344456667776666666555544 222221 111111 11111111 110111100
Q ss_pred hhhchhhhhhhc-ccccchhh----------hhhhhhhHHhHHHHHHHhHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHH
Q 008522 480 ESKTESVEEQCI-VLSEDNFE----------LKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLAT 548 (563)
Q Consensus 480 E~rae~~E~kc~-~LsEtN~e----------LneELsflrsk~~~LE~sL~~A~~~K~~TakdI~~~tK~i~dLv~qLa~ 548 (563)
+...+.+-.+|. -|-.-+.. +...=.-|++.+.+|+..|..++..+..+.|.|..-...|+||-.++-.
T Consensus 513 eeE~E~~Rr~~qr~l~~le~~LE~E~k~r~~~~r~kkKLE~~l~eLe~~ld~~n~~~~e~~k~~kk~q~qlkdlq~~lee 592 (859)
T PF01576_consen 513 EEEFEETRRNHQRQLESLEAELEEERKERAEALREKKKLESDLNELEIQLDHANRANEEAQKQLKKLQAQLKDLQRELEE 592 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 111111111110 00000011 1111123778888889999999988888888887777888888776654
Q ss_pred H
Q 008522 549 Q 549 (563)
Q Consensus 549 E 549 (563)
.
T Consensus 593 ~ 593 (859)
T PF01576_consen 593 A 593 (859)
T ss_dssp -
T ss_pred H
Confidence 3
No 33
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=96.58 E-value=0.22 Score=49.80 Aligned_cols=143 Identities=23% Similarity=0.289 Sum_probs=76.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHhhhhhhhHHHHHHHhhh
Q 008522 337 LTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFL 416 (563)
Q Consensus 337 ~sL~eKv~sLEeQLkese~Ql~~akas~ea~~~~isdmEn~IedLK~kvskAESRAe~AEskc~lLteTN~EL~eEL~~L 416 (563)
+.+.+|+..+|.||++...-.+.|....+ +-..-+--+ -..+-.||-||+.++++|..|.+.=--+...|.+|
T Consensus 56 ~kdEE~~e~~e~qLkEAk~iaE~adrK~e---EVarkL~ii----E~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l 128 (205)
T KOG1003|consen 56 QKLEEKMEAQEAQLKEAKHIAEKADRKYE---EVARKLVII----EGELERAEERAEAAESQSEELEEDLRILDSNLKSL 128 (205)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH----HhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHH
Confidence 34555666666666665554444444422 222222111 23455788999999999988766544444333333
Q ss_pred hcCCCCcchhhhhhHHHHhhHHHHHHHhHhhhhhhHHHHHhHHHHHhhHHHHHHHHHHhhhhhhhhchhhhhhhcccccc
Q 008522 417 KGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSED 496 (563)
Q Consensus 417 ks~~ss~~ek~~~LE~qLkese~QLqhA~As~eAs~eqQ~ml~sti~DME~vIedLksKv~kaE~rae~~E~kc~~LsEt 496 (563)
.-. -.. +.-.....+..|..|-.|+-.|++||+.+|....-|-.+
T Consensus 129 ~~~--------------ee~---------------------~~q~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke 173 (205)
T KOG1003|consen 129 SAK--------------EEK---------------------LEQKEEKYEEELKELTDKLKEAETRAEFAERRVAKLEKE 173 (205)
T ss_pred HHH--------------HHH---------------------HhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHccc
Confidence 322 111 112344455666667777778888888877655555554
Q ss_pred hhhhhhhhhhHHhHHHHHHHhHHHH
Q 008522 497 NFELKNKQSFMRDKIKILESSLNRA 521 (563)
Q Consensus 497 N~eLneELsflrsk~~~LE~sL~~A 521 (563)
=-.|-..+...+.+-.++..-|+++
T Consensus 174 ~DdlE~kl~~~k~ky~~~~~eLD~~ 198 (205)
T KOG1003|consen 174 RDDLEEKLEEAKEKYEEAKKELDET 198 (205)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444433
No 34
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=96.44 E-value=2.3 Score=48.05 Aligned_cols=142 Identities=22% Similarity=0.220 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHhhhhhhhHHHHHHHhhhhcCCCCcch----hhhhhHHHHhhHHHHHHHhHhhhhh
Q 008522 375 DNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTK----KVGILENQLRDLEIQLQQAKVSSEA 450 (563)
Q Consensus 375 En~IedLK~kvskAESRAe~AEskc~lLteTN~EL~eEL~~Lks~~ss~~e----k~~~LE~qLkese~QLqhA~As~eA 450 (563)
+--++.||+.+..|+.+.+.++.+...|..-. ..+...|++..+... -+..|-.+|.+...+|.++++- -
T Consensus 282 ~~e~e~LkeqLr~~qe~lqaSqq~~~~L~~EL----~~~~~~RDrt~aeLh~aRLe~aql~~qLad~~l~lke~~~q--~ 355 (546)
T PF07888_consen 282 QQENEALKEQLRSAQEQLQASQQEAELLRKEL----SDAVNVRDRTMAELHQARLEAAQLKLQLADASLELKEGRSQ--W 355 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH--H
Confidence 33467788888899999888888777765432 222333333211111 1233444555555555444422 2
Q ss_pred hHHHHHhHHHHHhhHHHHHHHHHHhhhhhhh-------hchhhhhhhcccccchhhhhhhhhhHHhHHHHHHHhHHHHHH
Q 008522 451 SQEQQSMLYSAIWDMETLIEDLKSKVSKAES-------KTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANI 523 (563)
Q Consensus 451 s~eqQ~ml~sti~DME~vIedLksKv~kaE~-------rae~~E~kc~~LsEtN~eLneELsflrsk~~~LE~sL~~A~~ 523 (563)
.+++|... -++.-...-|++|+.-+.+++. +-..++.+.+-.++.|.- -|+-.|-.+..|+++|..|--
T Consensus 356 ~qEk~~l~-~~~e~~k~~ie~L~~el~~~e~~lqEer~E~qkL~~ql~ke~D~n~v---qlsE~~rel~Elks~lrv~qk 431 (546)
T PF07888_consen 356 AQEKQALQ-HSAEADKDEIEKLSRELQMLEEHLQEERMERQKLEKQLGKEKDCNRV---QLSENRRELQELKSSLRVAQK 431 (546)
T ss_pred HHHHHHHH-HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 23444322 2222223456666655554443 234455666666777731 233344444455555555555
Q ss_pred HHH
Q 008522 524 EKA 526 (563)
Q Consensus 524 ~K~ 526 (563)
+|.
T Consensus 432 EKE 434 (546)
T PF07888_consen 432 EKE 434 (546)
T ss_pred HHH
Confidence 553
No 35
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.40 E-value=2.3 Score=51.00 Aligned_cols=241 Identities=21% Similarity=0.268 Sum_probs=152.7
Q ss_pred cccccccCCc---ccccccccccchHHHHHHHHHHHHhhhhhhhHHHhhHHHhhhHHHHHhhhhhhhHHHHHHHHHHHHH
Q 008522 189 ALEFSANGQL---SNINGKSKMKNADQQRHILRMLEKSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVV 265 (563)
Q Consensus 189 ~~~~~e~~~~---~~~~~~~~mqt~eqqR~iLrMLekSlA~EldLEkkL~~s~~~eeeLk~kL~~~eqe~~~lEE~~~~~ 265 (563)
-+.+.+++.| |-+.+-..-+.++ +|+-|++-=+.+-.|+..=.+...++++|+.- +..
T Consensus 646 rsVTl~GDV~dP~GtlTGGs~~~~a~----~L~~l~~l~~~~~~~~~~q~el~~le~eL~~l---------------e~~ 706 (1174)
T KOG0933|consen 646 RSVTLEGDVYDPSGTLTGGSRSKGAD----LLRQLQKLKQAQKELRAIQKELEALERELKSL---------------EAQ 706 (1174)
T ss_pred ceeeecCceeCCCCcccCCCCCCccc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHH
Confidence 3445555555 3333434433333 57777766666666655555555555555421 111
Q ss_pred HHHHHhccchHHHHhhhhHHHHhhhhHHhhhcccchhchhHHHHHHHhHHHHHhhhhHHHHHhhhcCchhhhhHHHHHHH
Q 008522 266 WGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKS 345 (563)
Q Consensus 266 ~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~Lekl~~s~~SE~~sL~eKv~s 345 (563)
..+|---.+-.+..+-.+-....|++...|.-.+... -++.+-++.+..|+..+...+.+ -.+|+.-
T Consensus 707 ~~kf~~l~~ql~l~~~~l~l~~~r~~~~e~~~~~~~~--~~~~e~v~e~~~~Ike~~~~~k~-----------~~~~i~~ 773 (1174)
T KOG0933|consen 707 SQKFRDLKQQLELKLHELALLEKRLEQNEFHKLLDDL--KELLEEVEESEQQIKEKERALKK-----------CEDKIST 773 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcChHhhHHHHH--HHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHH
Confidence 1222222333444555555555666655555444332 23555566666666654444432 2446777
Q ss_pred HHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHhhhhhhhHHHHHHHhhhhcCCCCcch
Q 008522 346 LEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTK 425 (563)
Q Consensus 346 LEeQLkese~Ql~~akas~ea~~~~isdmEn~IedLK~kvskAESRAe~AEskc~lLteTN~EL~eEL~~Lks~~ss~~e 425 (563)
||+..++... . -..++.+++.-|+..|.++.....+-+..+-....|.-+=-+|+.++..++++
T Consensus 774 lE~~~~d~~~-------~---re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~------ 837 (1174)
T KOG0933|consen 774 LEKKMKDAKA-------N---RERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQ------ 837 (1174)
T ss_pred HHHHHhHhhh-------h---hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 7776665433 3 34588899999999999999999999999999999999999999999999997
Q ss_pred hhhhhHHHHhhHHHHHHHhHhhhhhhHHHHHhHHHHHhhHHHHHHHHHHhhhh
Q 008522 426 KVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSK 478 (563)
Q Consensus 426 k~~~LE~qLkese~QLqhA~As~eAs~eqQ~ml~sti~DME~vIedLksKv~k 478 (563)
+..++.++..+..++..+.|.+.+....+.-+...|.|.-..+.+.-+....
T Consensus 838 -l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~ 889 (1174)
T KOG0933|consen 838 -LEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISG 889 (1174)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhh
Confidence 8899999999999999988888887765665565566555555555444433
No 36
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=96.25 E-value=3.3 Score=48.01 Aligned_cols=219 Identities=23% Similarity=0.248 Sum_probs=115.5
Q ss_pred ccchHHHHhhhhHHHHhhhhHHhhhcccchhchhHHHHHHHhHHHHHhhhhHHHHHhhhc------------CchhhhhH
Q 008522 272 AENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLEST------------KNSEVLTM 339 (563)
Q Consensus 272 AENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~Lekl~~s------------~~SE~~sL 339 (563)
+.=..+.++|-+++-.++|+ .|...-.+.+.++-..+.+..-+ +-.++-.+
T Consensus 376 ~~~~le~~k~~~ke~~~~~~-----------------~ka~~E~e~l~q~l~~~~k~e~~e~~k~~~d~~~r~~~~~~~~ 438 (698)
T KOG0978|consen 376 NELRLEMLKSLLKEQRDKLQ-----------------VKARAETESLLQRLKALDKEERSEIRKQALDDAERQIRQVEEL 438 (698)
T ss_pred HHHHHHHHhCCCHHHHhHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHH
Confidence 33445777888888888777 45555555666555555544443 01233333
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhhh-------hhHHHHHhhhhhhhHHHHHH
Q 008522 340 KEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRA-------ESAEEKVTQLTDTNLELSEE 412 (563)
Q Consensus 340 ~eKv~sLEeQLkese~Ql~~akas~ea~~~~isdmEn~IedLK~kvskAESRA-------e~AEskc~lLteTN~EL~eE 412 (563)
.+-++.+++-.+.+-...+.+.+ -..+|+..|-.|=..+-+++-+. .++-.+...|.+.=..|++.
T Consensus 439 ~e~Lqk~~~~~k~ll~e~~t~gs-------A~ed~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~ 511 (698)
T KOG0978|consen 439 SEELQKKEKNFKCLLSEMETIGS-------AFEDMQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQ 511 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333322222222222 33456666666655555555444 34444445555555555555
Q ss_pred HhhhhcCCCCcchhhhhhHHHHhhHHHHHHHhHhhhhhhHHHHHhHHHHHhhHHHHHHHHHHhhhhhhhhchhhhhhhcc
Q 008522 413 INFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIV 492 (563)
Q Consensus 413 L~~Lks~~ss~~ek~~~LE~qLkese~QLqhA~As~eAs~eqQ~ml~sti~DME~vIedLksKv~kaE~rae~~E~kc~~ 492 (563)
+.-|+.+....-.++.-||.|++-+-.+...-.+.....+-.-.|...++-|...-.++||.++.+.++..+....+|.-
T Consensus 512 i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e 591 (698)
T KOG0978|consen 512 ILTLKASVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAE 591 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555542222344455555555443332222222222222223445578888899999999999999998888888764
Q ss_pred cc-------cchhhhhhhhhhHHhHHHHH
Q 008522 493 LS-------EDNFELKNKQSFMRDKIKIL 514 (563)
Q Consensus 493 Ls-------EtN~eLneELsflrsk~~~L 514 (563)
++ ..+..|-+|+.-|+.+++.+
T Consensus 592 ~~~ele~~~~k~~rleEE~e~L~~kle~~ 620 (698)
T KOG0978|consen 592 LELELEIEKFKRKRLEEELERLKRKLERL 620 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 43 33444455555555555444
No 37
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.23 E-value=3.5 Score=50.15 Aligned_cols=198 Identities=18% Similarity=0.270 Sum_probs=124.4
Q ss_pred hhhHHhhhcccchhchhHHHHHHHhHHHHHhhh----------hHHHHHhhhcCchhhhhHHHHHHHHHHHHHHHHHH--
Q 008522 289 RFQIVQFNLNGSLQRESELKSKLGDFIEQLKAK----------DMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIR-- 356 (563)
Q Consensus 289 kLq~~qf~L~as~~REsel~sKL~~~~eqL~~k----------~~~Lekl~~s~~SE~~sL~eKv~sLEeQLkese~Q-- 356 (563)
++...+--++-...+.-.++++|+.+.-+.+-- ..+++++-+...-+.+.++..+..|++++..-+.-
T Consensus 385 ~~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~ 464 (1293)
T KOG0996|consen 385 KFESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELD 464 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444555555666555555444433 34444444433445555666666666665544443
Q ss_pred --HhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHhhhhhhhHHHHHHHhhhhcCCCCcchhhhhhHHHH
Q 008522 357 --LQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQL 434 (563)
Q Consensus 357 --l~~akas~ea~~~~isdmEn~IedLK~kvskAESRAe~AEskc~lLteTN~EL~eEL~~Lks~~ss~~ek~~~LE~qL 434 (563)
+...+...++..+++...+--...+..++-.|.++.+-|+++..+|...-..+...+..|+++ +......+
T Consensus 465 e~~~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~-------L~~~~~~~ 537 (1293)
T KOG0996|consen 465 EILDSLKQETEGIREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGK-------LLASSESL 537 (1293)
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH
Confidence 455666667788899999999999999999999999999999999988777666666555553 22222222
Q ss_pred hhHHHHHHHhHhhhhhhHHHHHhHHHHHhhHHHHHHHHHHhhhhhhhhchhhhhhhcccccchhhhhhhhhhHHhHHHHH
Q 008522 435 RDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKIL 514 (563)
Q Consensus 435 kese~QLqhA~As~eAs~eqQ~ml~sti~DME~vIedLksKv~kaE~rae~~E~kc~~LsEtN~eLneELsflrsk~~~L 514 (563)
. + ....+.++...|.++|.+...+++...++.. ++. .|+.-+..+|.|++.+
T Consensus 538 ~-----------------e----~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~-----e~~--~~~~~~~~~rqrveE~ 589 (1293)
T KOG0996|consen 538 K-----------------E----KKTELDDLKEELPSLKQELKEKEKELPKLRK-----EER--NLKSQLNKLRQRVEEA 589 (1293)
T ss_pred H-----------------H----HHHHHHHHHHhhhhHHHHHHHHHHhHHHHHH-----HHH--HHHHHHHHHHHHHHHH
Confidence 1 2 2445778888999999888888877444332 222 2445566677777766
Q ss_pred HHhHHHH
Q 008522 515 ESSLNRA 521 (563)
Q Consensus 515 E~sL~~A 521 (563)
-++++..
T Consensus 590 ks~~~~~ 596 (1293)
T KOG0996|consen 590 KSSLSSS 596 (1293)
T ss_pred HHHHHhh
Confidence 5555443
No 38
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=96.17 E-value=0.0013 Score=74.07 Aligned_cols=178 Identities=22% Similarity=0.275 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHhhhhhhhhH------HHHHhhhhhhhHHHHHHHhhhhcCCCCcchhhhhhHHHHhhHHHHHHHhH
Q 008522 372 NEMDNFIESLKESLYGAESRAESA------EEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAK 445 (563)
Q Consensus 372 sdmEn~IedLK~kvskAESRAe~A------Eskc~lLteTN~EL~eEL~~Lks~~ss~~ek~~~LE~qLkese~QLqhA~ 445 (563)
++.+..|..|+..+...++.+... -..+.-|..+|.+|..|+..||..- +.+..|+.+.+-+..+|+.+.
T Consensus 226 ~e~e~~i~~Le~el~~~~~~~~i~k~l~~ql~~i~~LE~en~~l~~Elk~Lr~~~----~n~elLeEe~~sLq~kl~~~E 301 (722)
T PF05557_consen 226 AEAEQKIKELEAELKDQESDAEINKELKEQLAHIRELEKENRRLREELKHLRQSQ----ENVELLEEEKRSLQRKLERLE 301 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHHHHH
Confidence 344666666666555555543111 2356778899999999999999963 346666666666666665554
Q ss_pred hhhh---hhHHHHHhHHHHHhhHHHHH----------HHHHHhhhhhhhhchhhhhhhcccccchhhhhhhhhhHHhHHH
Q 008522 446 VSSE---ASQEQQSMLYSAIWDMETLI----------EDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIK 512 (563)
Q Consensus 446 As~e---As~eqQ~ml~sti~DME~vI----------edLksKv~kaE~rae~~E~kc~~LsEtN~eLneELsflrsk~~ 512 (563)
..-. .-+.+-..|......+..++ +++...+...+.+ ++.|.+.+-.+.-++.-++..+.
T Consensus 302 ~~~~el~~lq~e~~~Le~el~sW~sl~~~~~~~~~sPe~l~~~l~~lq~~-------~~~L~ek~g~~~~~~~~l~~~~~ 374 (722)
T PF05557_consen 302 ELEEELAELQLENEKLEDELNSWESLLQDIGLEFDSPEDLARALVQLQQE-------NASLTEKLGSLQSELRELEEEIQ 374 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHH-------HHHHHHHHhhhhHHHHHHHHHHH
Confidence 2111 11111112333333334333 3444455544444 66667766666666666666666
Q ss_pred HHHHhHHHHHHHHHhhHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHh
Q 008522 513 ILESSLNRANIEKAASAKEVNHRTKLMMEM---VMQLATQRELIQKQVLIL 560 (563)
Q Consensus 513 ~LE~sL~~A~~~K~~TakdI~~~tK~i~dL---v~qLa~ERErL~~Qissl 560 (563)
.|+.....+...-...-..+...++.+.-| +.=+.-||+.|..|+-++
T Consensus 375 ~Le~e~~~l~~~~~~l~~~~~~~~~~~~RLerq~~L~~kE~d~LR~~L~sy 425 (722)
T PF05557_consen 375 ELEQEKEQLLKEIEELEASLEALKKLIRRLERQKALATKERDYLRAQLKSY 425 (722)
T ss_dssp ---------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 665554433222111111111222222222 222345777777666553
No 39
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.15 E-value=4.6 Score=48.62 Aligned_cols=202 Identities=19% Similarity=0.241 Sum_probs=123.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHhhhhhhhHHHHH---
Q 008522 335 EVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSE--- 411 (563)
Q Consensus 335 E~~sL~eKv~sLEeQLkese~Ql~~akas~ea~~~~isdmEn~IedLK~kvskAESRAe~AEskc~lLteTN~EL~e--- 411 (563)
++.+|.+++.++=.-......-+...+.+...-.+++..|..-|++++.++.+-+++....++-...+-+.=.++..
T Consensus 295 ~~~~L~~~~~~~~~~~tr~~t~l~~~~~tl~~e~~k~e~i~~~i~e~~~~l~~k~~~~~~~~~~~~~~ke~~~~~s~~~e 374 (1174)
T KOG0933|consen 295 EVKALEDKLDSLQNEITREETSLNLKKETLNGEEEKLEEIRKNIEEDRKKLKEKEKAMAKVEEGYEKLKEAFQEDSKLLE 374 (1174)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 34566666666655555555555556666665666888899999999999988888888777766666666555544
Q ss_pred ----HHhhhhcCCCCcchh-hhhhHHHHhhHHHHHHHhHhhhhhhHHHHHhHHHHHhhHHHHHHHHHHhhhhhhhhchhh
Q 008522 412 ----EINFLKGNNDSNTKK-VGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESV 486 (563)
Q Consensus 412 ----EL~~Lks~~ss~~ek-~~~LE~qLkese~QLqhA~As~eAs~eqQ~ml~sti~DME~vIedLksKv~kaE~rae~~ 486 (563)
.++.|.- |.|.++. -.+|+.||+..- .++.++.+-|+-.+-|..+.+......
T Consensus 375 ~~e~~~eslt~-G~Ss~~~~e~~l~~ql~~aK---------------------~~~~~~~t~~k~a~~k~e~~~~elk~~ 432 (1174)
T KOG0933|consen 375 KAEELVESLTA-GLSSNEDEEKTLEDQLRDAK---------------------ITLSEASTEIKQAKLKLEHLRKELKLR 432 (1174)
T ss_pred HHHHHHHHHhc-ccccCccchhhHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444 3344444 778888888753 344444445555555555555555555
Q ss_pred hhhhcccccchhhhhhhhhhHHhHHHHHHHhHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 008522 487 EEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVLI 559 (563)
Q Consensus 487 E~kc~~LsEtN~eLneELsflrsk~~~LE~sL~~A~~~K~~TakdI~~~tK~i~dLv~qLa~ERErL~~Qiss 559 (563)
+-+....+..+....+++..+.--++.|+..|...+- +..--+++.-+..-.-.-+.+|-.+.+||..++..
T Consensus 433 e~e~~t~~~~~~~~~~~ld~~q~eve~l~~~l~~l~~-~~~~~e~l~q~~~~l~~~~~~lk~~~~~l~a~~~~ 504 (1174)
T KOG0933|consen 433 EGELATASAEYVKDIEELDALQNEVEKLKKRLQSLGY-KIGQEEALKQRRAKLHEDIGRLKDELDRLLARLAN 504 (1174)
T ss_pred hhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 5555556666777788888888777777776654321 22222223333333333456677777777776643
No 40
>PRK03918 chromosome segregation protein; Provisional
Probab=96.11 E-value=3.6 Score=47.09 Aligned_cols=12 Identities=8% Similarity=0.490 Sum_probs=6.4
Q ss_pred hcCCccccccCC
Q 008522 73 RGDDLETLVMEN 84 (563)
Q Consensus 73 ~~~d~E~~~~~~ 84 (563)
+-.+|..+..+|
T Consensus 133 ~Qg~~~~~~~~~ 144 (880)
T PRK03918 133 RQGEIDAILESD 144 (880)
T ss_pred eccchHHHhcCc
Confidence 455666665443
No 41
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=96.01 E-value=3.8 Score=46.42 Aligned_cols=77 Identities=18% Similarity=0.213 Sum_probs=44.3
Q ss_pred hhHHHhhHHHhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhcccchhch
Q 008522 228 LDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRE 304 (563)
Q Consensus 228 ldLEkkL~~s~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~RE 304 (563)
.-|++.....+.-...|+..|.+..++...|......+....-....=.+.|.-...++..|+...+.++....++.
T Consensus 160 ~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~~l~qk~ 236 (546)
T PF07888_consen 160 EQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELEEDIKTLTQKE 236 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555566666666666666666666666555554444333333334555566666667666666666555554
No 42
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.00 E-value=1.9 Score=46.72 Aligned_cols=85 Identities=21% Similarity=0.337 Sum_probs=56.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhh---hhhchhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHhhhhhhhHHHH
Q 008522 334 SEVLTMKEKVKSLEEQLKESEIRLQN---ANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELS 410 (563)
Q Consensus 334 SE~~sL~eKv~sLEeQLkese~Ql~~---akas~ea~~~~isdmEn~IedLK~kvskAESRAe~AEskc~lLteTN~EL~ 410 (563)
..+-.|.+.+..|+.+++..+..+.. ..........++.++++.|...+..+.....+....+++..-|...+.++.
T Consensus 299 ~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~ 378 (562)
T PHA02562 299 DRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNA 378 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchH
Confidence 45666777777777777777776553 333333345577788888888888877777777777777777777766666
Q ss_pred HHHhhhhc
Q 008522 411 EEINFLKG 418 (563)
Q Consensus 411 eEL~~Lks 418 (563)
++|..|..
T Consensus 379 ~~l~~l~~ 386 (562)
T PHA02562 379 EELAKLQD 386 (562)
T ss_pred HHHHHHHH
Confidence 66655554
No 43
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=95.95 E-value=0.72 Score=46.20 Aligned_cols=174 Identities=20% Similarity=0.245 Sum_probs=136.1
Q ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhcc-------chHHHHhhhhHHHHhhhhHHhhhcccchhchhHHHHHHHh
Q 008522 241 EEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAE-------NSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGD 313 (563)
Q Consensus 241 eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAE-------Na~EvL~g~skel~gkLq~~qf~L~as~~REsel~sKL~~ 313 (563)
+.-|+.|+..++++...-+|-......++-+|+ |..-||-+.+.-+-.|....+..|+-+-+.+-+---|.+.
T Consensus 6 va~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~adrK~eE 85 (205)
T KOG1003|consen 6 VAALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEAKHIAEKADRKYEE 85 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888888888888888888887765 6667888888888889999999999999888888888888
Q ss_pred HHHHHhhhhHHHHHhhhcCchhhhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhhhh
Q 008522 314 FIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAE 393 (563)
Q Consensus 314 ~~eqL~~k~~~Lekl~~s~~SE~~sL~eKv~sLEeQLkese~Ql~~akas~ea~~~~isdmEn~IedLK~kvskAESRAe 393 (563)
-.-+|.-.+..|+....- .|+-- .++..|+++++-.+.-+.+..++.+-.....-..+..|..|-+|+-.||.||+
T Consensus 86 VarkL~iiE~dLE~~eer--aE~~E--s~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE 161 (205)
T KOG1003|consen 86 VARKLVIIEGELERAEER--AEAAE--SQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAETRAE 161 (205)
T ss_pred HHHHHHHHHhHHHHHHHH--HHHHH--HHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHH
Confidence 888888777777766653 33322 26777788888777777777777777777888999999999999999999999
Q ss_pred hHHHHHhhhhhhhHHHHHHHhhhhc
Q 008522 394 SAEEKVTQLTDTNLELSEEINFLKG 418 (563)
Q Consensus 394 ~AEskc~lLteTN~EL~eEL~~Lks 418 (563)
.|+-.+.-|-.+=-.|-..+-..+.
T Consensus 162 ~aERsVakLeke~DdlE~kl~~~k~ 186 (205)
T KOG1003|consen 162 FAERRVAKLEKERDDLEEKLEEAKE 186 (205)
T ss_pred HHHHHHHHHcccHHHHHHhhHHHHH
Confidence 9997777666655555544444433
No 44
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=95.93 E-value=2.7 Score=50.07 Aligned_cols=66 Identities=45% Similarity=0.563 Sum_probs=43.0
Q ss_pred HHhhhHHHHHHHHHHHHhhhhh----------hhhHHHHHhhhhhhhHHHHHHHhhhhcCCCCcchhhhhhHHHHhhHHH
Q 008522 370 QLNEMDNFIESLKESLYGAESR----------AESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEI 439 (563)
Q Consensus 370 ~isdmEn~IedLK~kvskAESR----------Ae~AEskc~lLteTN~EL~eEL~~Lks~~ss~~ek~~~LE~qLkese~ 439 (563)
+++.+..+-|.|+.++..||+. |--||+=+++||+-|.+|-+.+..|+.- ++-||. +++.+.
T Consensus 411 E~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~qLtdknlnlEekVklLeet-------v~dlEa-lee~~E 482 (1243)
T KOG0971|consen 411 ELEELRRQKERLSRELDQAESTIADLKEQVDAALGAEEMVEQLTDKNLNLEEKVKLLEET-------VGDLEA-LEEMNE 482 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHhhccCHHHHHHHHHHH-------HHHHHH-HHHHHH
Confidence 4444444445555555555543 3569999999999999999998888874 555552 344444
Q ss_pred HHHH
Q 008522 440 QLQQ 443 (563)
Q Consensus 440 QLqh 443 (563)
||++
T Consensus 483 QL~E 486 (1243)
T KOG0971|consen 483 QLQE 486 (1243)
T ss_pred HHHH
Confidence 5543
No 45
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=95.86 E-value=4.6 Score=49.35 Aligned_cols=101 Identities=24% Similarity=0.264 Sum_probs=54.7
Q ss_pred HHHHHHHhhhhhhhhHHHHHhhhhhhhHHHHHHHhhhhcCCCCcchhhhhhHHHHhhHHHHHHHhHhhhhhhHHHHH---
Q 008522 380 SLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQS--- 456 (563)
Q Consensus 380 dLK~kvskAESRAe~AEskc~lLteTN~EL~eEL~~Lks~~ss~~ek~~~LE~qLkese~QLqhA~As~eAs~eqQ~--- 456 (563)
.++.++..++--+....++|.-|..++.+++..+..+...+....++...|+.....+..-...-.+.+++...++.
T Consensus 543 ~~rk~le~~~~d~~~e~~~~~kl~~~~~e~~~~iq~~~e~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~~~ 622 (1317)
T KOG0612|consen 543 SLRKQLEEAELDMRAESEDAGKLRKHSKELSKQIQQELEENRDLEDKLSLLEESKSKLSKENKKLRSELEKERRQRTEIS 622 (1317)
T ss_pred HHHHHHHHhhhhhhhhHHHHhhHhhhhhhhhHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444555677888888888888888777755445667777766644443333333344444444333
Q ss_pred ----hHHHHHhhHHHHHHHHHHhhhhhh
Q 008522 457 ----MLYSAIWDMETLIEDLKSKVSKAE 480 (563)
Q Consensus 457 ----ml~sti~DME~vIedLksKv~kaE 480 (563)
++...|..++.-++.++.-..|++
T Consensus 623 e~~~~l~~~i~sL~~~~~~~~~~l~k~~ 650 (1317)
T KOG0612|consen 623 EIIAELKEEISSLEETLKAGKKELLKVE 650 (1317)
T ss_pred HHHHHHHhHHHHHHHHHHhhhhHHHHHH
Confidence 334444444444444444444443
No 46
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.64 E-value=5.4 Score=45.41 Aligned_cols=317 Identities=18% Similarity=0.168 Sum_probs=170.2
Q ss_pred hhhhhhhHHHhhHHHhhhHHHHHhhhhhhhH----HHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhcc
Q 008522 223 SLARELDLEKKISELNQNEEQLKLKLHHTEQ----VAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLN 298 (563)
Q Consensus 223 SlA~EldLEkkL~~s~~~eeeLk~kL~~~eq----e~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~ 298 (563)
|--+=|+.+-. ....+.+|+.++...-+ +...|+.....+.+.+- ..+-.-|--..+..+-..+|.|.|
T Consensus 204 ~Y~~fl~g~d~---~~~~~~Elk~~l~~~~~~i~~~ie~l~~~n~~l~e~i~----e~ek~~~~~eslre~~~~L~~D~n 276 (581)
T KOG0995|consen 204 SYTSFLKGEDN---SSELEDELKHRLEKYFTSIANEIEDLKKTNRELEEMIN----EREKDPGKEESLREKKARLQDDVN 276 (581)
T ss_pred HHHHHhccCcc---cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhcCcchHHHHHHHHHHHHhHHH
Confidence 33344444443 34556677766654444 23334444444444443 333344444445555555555555
Q ss_pred cchhchhHHHHHHHhHHHHHhhhhHHHHHhhhcCchhhhhHHHHHHHHHHHHHH---HHHHHhhhhhchhhhHHHHhhhH
Q 008522 299 GSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKE---SEIRLQNANACFQTSQEQLNEMD 375 (563)
Q Consensus 299 as~~REsel~sKL~~~~eqL~~k~~~Lekl~~s~~SE~~sL~eKv~sLEeQLke---se~Ql~~akas~ea~~~~isdmE 375 (563)
-..--.+.+++|-..-...|+....+++. +.+|+.+|+.++..|-+|+.- |..+...+....++-...+..+.
T Consensus 277 K~~~y~~~~~~k~~~~~~~l~~l~~Eie~----kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~ 352 (581)
T KOG0995|consen 277 KFQAYVSQMKSKKQHMEKKLEMLKSEIEE----KEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQ 352 (581)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333322222222222222 467888888888888777653 22333344444455555666666
Q ss_pred HHHHHHHHHHHhh----hhhhhhHHHHHhhhhhhhHHHHHH-Hhhhhc--------C--CCCcchhhh-hhHHHHhhHHH
Q 008522 376 NFIESLKESLYGA----ESRAESAEEKVTQLTDTNLELSEE-INFLKG--------N--NDSNTKKVG-ILENQLRDLEI 439 (563)
Q Consensus 376 n~IedLK~kvskA----ESRAe~AEskc~lLteTN~EL~eE-L~~Lks--------~--~ss~~ek~~-~LE~qLkese~ 439 (563)
.-++.|-.+|-+- +.+...-+.+...+...=..|.-- +.+.++ . +......|. .|..-+.+...
T Consensus 353 ~~~d~l~k~vw~~~l~~~~~f~~le~~~~~~~~l~~~i~l~~~~~~~n~~~~pe~~~~~~~d~k~~V~~~l~el~~ei~~ 432 (581)
T KOG0995|consen 353 SELDRLSKEVWELKLEIEDFFKELEKKFIDLNSLIRRIKLGIAENSKNLERNPERAATNGVDLKSYVKPLLKELLDEISE 432 (581)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCccCccccccchhHhHHHHHHHHHHHHH
Confidence 6666665555443 444444444444333322222222 223333 1 000111111 12222222222
Q ss_pred HHHHhHhhhhhhHHHHHhHHHHHhhHHHHHHHHHHhhhhhhhhchhhhhhhcccccchhhhhhhhhhHHhHHHHHHHhHH
Q 008522 440 QLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLN 519 (563)
Q Consensus 440 QLqhA~As~eAs~eqQ~ml~sti~DME~vIedLksKv~kaE~rae~~E~kc~~LsEtN~eLneELsflrsk~~~LE~sL~ 519 (563)
++..|+ .+-.-|-.+++.|.+.|++++.-+...+.++-.++++|-..-+++-+ |..--|..++.||..|+
T Consensus 433 ~~~~~~-------~~~~tLq~~~~~~~~~i~E~~~~l~~~~~el~~~~~~~~~~k~e~ee---e~~k~~~E~e~le~~l~ 502 (581)
T KOG0995|consen 433 ELHEAE-------NELETLQEHFSNKASTIEEKIQILGEIELELKKAESKYELKKEEAEE---EWKKCRKEIEKLEEELL 502 (581)
T ss_pred HHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 222221 11123556889999999999999999999999999999988887766 55567888888888888
Q ss_pred HHHHHHHhhHHHHHHHhHHHH----HHHHHHHHHHHHHHHHHHHh
Q 008522 520 RANIEKAASAKEVNHRTKLMM----EMVMQLATQRELIQKQVLIL 560 (563)
Q Consensus 520 ~A~~~K~~TakdI~~~tK~i~----dLv~qLa~ERErL~~Qissl 560 (563)
..+..=...-++.+-.-+.+. .+|.-...||+.+++||.-+
T Consensus 503 ~l~l~~~~~m~~a~~~v~s~e~el~~~~~~~~eer~ki~~ql~~~ 547 (581)
T KOG0995|consen 503 NLKLVLNTSMKEAEELVKSIELELDRMVATGEEERQKIAKQLFAV 547 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 877665555555555544443 35556667899999988654
No 47
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=95.56 E-value=5.3 Score=44.77 Aligned_cols=118 Identities=20% Similarity=0.255 Sum_probs=85.7
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHhhhhhhhHHHHHH
Q 008522 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEE 412 (563)
Q Consensus 333 ~SE~~sL~eKv~sLEeQLkese~Ql~~akas~ea~~~~isdmEn~IedLK~kvskAESRAe~AEskc~lLteTN~EL~eE 412 (563)
+.++..+++++..+-..|+.. .+..|....+....+|.+|=.+++.=-..-...+.....-......+...|.+|..|
T Consensus 251 ~~~i~~i~~~l~~~~~~L~~l--~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e 328 (560)
T PF06160_consen 251 EEEIEQIEEQLEEALALLKNL--ELDEVEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEE 328 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 466666666666666666443 345666666667777777777776655666666777777788888899999999999
Q ss_pred HhhhhcCC---CCcchhhhhhHHHHhhHHHHHHHhHhhhhhhH
Q 008522 413 INFLKGNN---DSNTKKVGILENQLRDLEIQLQQAKVSSEASQ 452 (563)
Q Consensus 413 L~~Lks~~---ss~~ek~~~LE~qLkese~QLqhA~As~eAs~ 452 (563)
+..++.+= ....+++..++++|+....+...........+
T Consensus 329 ~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~ 371 (560)
T PF06160_consen 329 LERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQ 371 (560)
T ss_pred HHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999872 12466888999999988888877776665554
No 48
>PRK04863 mukB cell division protein MukB; Provisional
Probab=95.56 E-value=5.2 Score=50.00 Aligned_cols=66 Identities=18% Similarity=0.154 Sum_probs=35.7
Q ss_pred HHHHHhhHHHHHHHHHHhhhh---hhhhchhhhhhhc--ccccchhhhhhhhhhHHhHHHHHHHhHHHHHHHH
Q 008522 458 LYSAIWDMETLIEDLKSKVSK---AESKTESVEEQCI--VLSEDNFELKNKQSFMRDKIKILESSLNRANIEK 525 (563)
Q Consensus 458 l~sti~DME~vIedLksKv~k---aE~rae~~E~kc~--~LsEtN~eLneELsflrsk~~~LE~sL~~A~~~K 525 (563)
+...+.+...-+..+++++.. +-.+.+.|+.-|. .||+.|++ ..+..+..++..++..+......-
T Consensus 395 LqeqLaelqqel~elQ~el~q~qq~i~~Le~~~~~~~~~~~SdEeLe--~~LenF~aklee~e~qL~elE~kL 465 (1486)
T PRK04863 395 LKSQLADYQQALDVQQTRAIQYQQAVQALERAKQLCGLPDLTADNAE--DWLEEFQAKEQEATEELLSLEQKL 465 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444422 2234467788886 88888865 555566655555555554444333
No 49
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=95.55 E-value=0.58 Score=53.88 Aligned_cols=138 Identities=22% Similarity=0.341 Sum_probs=80.8
Q ss_pred hHHhhhcccchhchhHHHHHHH---h-------HHHHHhhhhHHHH----HhhhcC---chhhhhHHHHHHHHHHHHHHH
Q 008522 291 QIVQFNLNGSLQRESELKSKLG---D-------FIEQLKAKDMVLQ----KLESTK---NSEVLTMKEKVKSLEEQLKES 353 (563)
Q Consensus 291 q~~qf~L~as~~REsel~sKL~---~-------~~eqL~~k~~~Le----kl~~s~---~SE~~sL~eKv~sLEeQLkes 353 (563)
..+..+|.++.+.|.||++++. . .+.|+......|+ .|...+ ..-..+|..|+...-++-...
T Consensus 428 kkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~l 507 (697)
T PF09726_consen 428 KKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASL 507 (697)
T ss_pred HHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467889999999999999932 2 2333333322222 222221 222334444444433333333
Q ss_pred HHHHhh------------hhh----------chhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHhhhhhhh-----
Q 008522 354 EIRLQN------------ANA----------CFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTN----- 406 (563)
Q Consensus 354 e~Ql~~------------aka----------s~ea~~~~isdmEn~IedLK~kvskAESRAe~AEskc~lLteTN----- 406 (563)
+.||.. |++ ..|.|.....+||+-+..|...+-..|.+...+|.++..|-..+
T Consensus 508 EkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~ 587 (697)
T PF09726_consen 508 EKQLQEERKARKEEEEKAARALAQAQATRQECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEK 587 (697)
T ss_pred HHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 444321 111 11335568889999999999999999999999998885444331
Q ss_pred --HHHHHHHhhhhcCCCCcchhhhhhHHHHh
Q 008522 407 --LELSEEINFLKGNNDSNTKKVGILENQLR 435 (563)
Q Consensus 407 --~EL~eEL~~Lks~~ss~~ek~~~LE~qLk 435 (563)
..|-..|+.+++ |-.-||+.|.
T Consensus 588 ~~e~L~~aL~amqd-------k~~~LE~sLs 611 (697)
T PF09726_consen 588 DTEVLMSALSAMQD-------KNQHLENSLS 611 (697)
T ss_pred hHHHHHHHHHHHHH-------HHHHHHHhhh
Confidence 234445666665 5677887774
No 50
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=95.49 E-value=5.7 Score=44.66 Aligned_cols=327 Identities=21% Similarity=0.258 Sum_probs=196.7
Q ss_pred chHHHHHHHHHHHHhhh--------hhhhHHHhhHHHhhhHHHHHhhhhhhhHH----HHHHHHHHHHHHHHHHhccchH
Q 008522 209 NADQQRHILRMLEKSLA--------RELDLEKKISELNQNEEQLKLKLHHTEQV----AFRMEEAAEVVWGRFLEAENSA 276 (563)
Q Consensus 209 t~eqqR~iLrMLekSlA--------~EldLEkkL~~s~~~eeeLk~kL~~~eqe----~~~lEE~~~~~~er~~EAENa~ 276 (563)
|.+||---=+|.||.|- +=|+++-.-. ..++||+......-+- ...+-+.-..+++++-||.-.+
T Consensus 218 tl~qq~~~e~~Vek~lfdY~~~~Y~~fl~~~~~~~---~~e~Elk~~f~~~~~~i~~~i~~lk~~n~~l~e~i~ea~k~s 294 (622)
T COG5185 218 TLDQQDRYELMVEKLLFDYFTESYKSFLKLEDNYE---PSEQELKLGFEKFVHIINTDIANLKTQNDNLYEKIQEAMKIS 294 (622)
T ss_pred hHhhccHHHHHHHHHHHHHHHHHHHHHhcCCCccC---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666444567777653 3444444332 3566777666544443 3345555666777777777665
Q ss_pred HHHhhhhHHHHhhhhHHhhhcccchhchhHHHHHHHhHHHHHhhhhHHHHHhhhcCchhhhhHHHHHHHHHHHHHHHHHH
Q 008522 277 EVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIR 356 (563)
Q Consensus 277 EvL~g~skel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~Lekl~~s~~SE~~sL~eKv~sLEeQLkese~Q 356 (563)
+-. +.+-.|--.++.|++-..--++-++.|-+.-.-.++.-..+.++ +.+|.+.|+.+...|-.|++.-++-
T Consensus 295 ~~i----~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~----kEeei~~L~~~~d~L~~q~~kq~Is 366 (622)
T COG5185 295 QKI----KTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIEL----KEEEIKALQSNIDELHKQLRKQGIS 366 (622)
T ss_pred HHH----HHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH----HHHHHHHHHhhHHHHHHHHHhcCCC
Confidence 532 56666777777777655555555555544333222222222222 4678899999999999988865443
Q ss_pred H---hhhhhchhhhHHHHhhh----HHHHHHHHHHHHhhhhhhhhHHHHHhhhhhhhHHHH------------------H
Q 008522 357 L---QNANACFQTSQEQLNEM----DNFIESLKESLYGAESRAESAEEKVTQLTDTNLELS------------------E 411 (563)
Q Consensus 357 l---~~akas~ea~~~~isdm----En~IedLK~kvskAESRAe~AEskc~lLteTN~EL~------------------e 411 (563)
. .-+.+.-+..--++.-| +.+-...++.-..|+.++++-|.+.-.+-.-=..+. -
T Consensus 367 ~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~~~leaq~~~~slek~~~~~~sl~~~i~~~~~~i~~~~nd~~l~iN~ 446 (622)
T COG5185 367 TEQFELMNQEREKLTRELDKINIQSDKLTKSVKSRKLEAQGIFKSLEKTLRQYDSLIQNITRSRSQIGHNVNDSSLKINI 446 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHhhcCCCCceeecc
Confidence 2 22333333222233333 333444556667788888877776665533211111 1
Q ss_pred HHhhhhcCCCCcchhhhhhHHHHhhHHHHHHHhHhhhhhhHHHHH--h-HHHHHhhHHHHHHHHHHhhhhhhhhchhhhh
Q 008522 412 EINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQS--M-LYSAIWDMETLIEDLKSKVSKAESKTESVEE 488 (563)
Q Consensus 412 EL~~Lks~~ss~~ek~~~LE~qLkese~QLqhA~As~eAs~eqQ~--m-l~sti~DME~vIedLksKv~kaE~rae~~E~ 488 (563)
|-.|-++.| .+.++--++..|+.. +|+ -..+.|+ . |...++..++.|-+|..-+.+.|.+.-.|-+
T Consensus 447 E~~~~~~sg--~~~~I~~~i~eln~~-i~~--------~~~~e~nksi~Lee~i~~~~~~i~El~~~l~~~e~~L~~a~s 515 (622)
T COG5185 447 EQLFPKGSG--INESIKKSILELNDE-IQE--------RIKTEENKSITLEEDIKNLKHDINELTQILEKLELELSEANS 515 (622)
T ss_pred ccCCccccC--chHhHHHHHHHHhHH-HHH--------HHHHHhccceeHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 111222222 245555555555542 221 1222232 3 5668899999999999999999999999999
Q ss_pred hhcccccchhhhhhhhhhHHhHHHHHHHhHHHHHHH---HHhhHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHh
Q 008522 489 QCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIE---KAASAKEVNHRTKL-MMEMVMQLATQRELIQKQVLIL 560 (563)
Q Consensus 489 kc~~LsEtN~eLneELsflrsk~~~LE~sL~~A~~~---K~~TakdI~~~tK~-i~dLv~qLa~ERErL~~Qissl 560 (563)
+|-.+-++|-. |+-..+-.++-||+.|...+.. ++--+.+.-.++.+ ...+.--+..+|..+|+||.-+
T Consensus 516 ~~~~~ke~~e~---e~~a~~~E~eklE~el~~lnL~s~ts~l~~eq~vqs~~i~ld~~~~~~n~~r~~i~k~V~~v 588 (622)
T COG5185 516 KFELSKEENER---ELVAQRIEIEKLEKELNDLNLLSKTSILDAEQLVQSTEIKLDELKVDLNRKRYKIHKQVIHV 588 (622)
T ss_pred HHHHHHHhhHH---HHHHHHHHHHHHHHHHHHhhhhccchHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999865 7777888889999998887754 44445554444433 3456667788999999998644
No 51
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=95.45 E-value=0.85 Score=42.81 Aligned_cols=35 Identities=29% Similarity=0.455 Sum_probs=20.0
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHhhhhhchhhh
Q 008522 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTS 367 (563)
Q Consensus 333 ~SE~~sL~eKv~sLEeQLkese~Ql~~akas~ea~ 367 (563)
+-|+.+|+.|+..||.+|-.++.++..++..++..
T Consensus 34 E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~ 68 (143)
T PF12718_consen 34 EQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEES 68 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34556666666666666666665555555444433
No 52
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=95.34 E-value=3.7 Score=46.50 Aligned_cols=310 Identities=15% Similarity=0.162 Sum_probs=164.3
Q ss_pred hhhhhhhHhhHHHHHHHHHHHHHhhHhhhhhhhhcccCCCcccccccccCCcccccccccccchHHHHHHHHHHHHhhhh
Q 008522 147 EKKLHDCEGSLKESQEHVSELKMQSAKFQRVLSYFIHGNNDEALEFSANGQLSNINGKSKMKNADQQRHILRMLEKSLAR 226 (563)
Q Consensus 147 ~~kL~~~~~sLkq~qe~~~eik~qsa~f~r~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~mqt~eqqR~iLrMLekSlA~ 226 (563)
.++|.+|=+..+++..|=..+..+.--|+.++.. +. ++++...
T Consensus 48 NDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~------~t----------s~ik~~y--------------------- 90 (546)
T KOG0977|consen 48 NDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGR------ET----------SGIKAKY--------------------- 90 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC------CC----------cchhHHh---------------------
Confidence 5667777777777777766666666666655421 11 2222222
Q ss_pred hhhHHHhhHHHhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhcccchhchhH
Q 008522 227 ELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESE 306 (563)
Q Consensus 227 EldLEkkL~~s~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REse 306 (563)
|.-|..++...++-.-..+-++.+...+.+....+-.||.+++.....-+.......++|..++.-++=.-.|=..
T Consensus 91 ----e~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~ 166 (546)
T KOG0977|consen 91 ----EAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKA 166 (546)
T ss_pred ----hhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHH
Confidence 2234455666666666667777888888888888888888888888888888888888887777766655444333
Q ss_pred HHHHHHhHHHHHhhhhHHHHHhhhcC----------chhhhhHHHHHHHHH----HHHHHHHHHHhhhh--hchhhhHHH
Q 008522 307 LKSKLGDFIEQLKAKDMVLQKLESTK----------NSEVLTMKEKVKSLE----EQLKESEIRLQNAN--ACFQTSQEQ 370 (563)
Q Consensus 307 l~sKL~~~~eqL~~k~~~Lekl~~s~----------~SE~~sL~eKv~sLE----eQLkese~Ql~~ak--as~ea~~~~ 370 (563)
+.+.++....+...-...|..++.-. ...+++|.+.+.-+. ..+++.....+-.- ...+.+..+
T Consensus 167 le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t~~~r~~F~~e 246 (546)
T KOG0977|consen 167 LEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARRDTTADNREYFKNE 246 (546)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhcccccchHHHHHH
Confidence 33333333333333333344333321 234455555544433 33333322222111 111222222
Q ss_pred Hh---------------hhHHHHHH-HHHHHHhhhhhhhhHHHHHhhhhhhhHHHHHHHhhhhcCCCCcchhhhhhHHHH
Q 008522 371 LN---------------EMDNFIES-LKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQL 434 (563)
Q Consensus 371 is---------------dmEn~Ied-LK~kvskAESRAe~AEskc~lLteTN~EL~eEL~~Lks~~ss~~ek~~~LE~qL 434 (563)
+. .-..-|+. .+.+|.++...+..+-.-.-..-|-=......++.||++-+-...+-..|++++
T Consensus 247 L~~Ai~eiRaqye~~~~~nR~diE~~Y~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I 326 (546)
T KOG0977|consen 247 LALAIREIRAQYEAISRQNRKDIESWYKRKIQEIRTSAERANVEQNYAREELRRIRSRISGLRAKLSELESRNSALEKRI 326 (546)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHhcccchhhhhccccccChhHHHHH
Confidence 11 11111111 345666665544433222222222222222223333333221222345677777
Q ss_pred hhHHHHHHHhHhhhhhhHHHHHhHHHHHhhHHHHHHHHHHhhhhhhhhchhhhhhhcccccchhhhhhhhhhHHhHHHHH
Q 008522 435 RDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKIL 514 (563)
Q Consensus 435 kese~QLqhA~As~eAs~eqQ~ml~sti~DME~vIedLksKv~kaE~rae~~E~kc~~LsEtN~eLneELsflrsk~~~L 514 (563)
..++.||.. .|.+...++-|-+.-|..+...+...-.+ .-.|=+++.-|.-||+-||.=|+.=
T Consensus 327 ~dL~~ql~e----------~~r~~e~~L~~kd~~i~~mReec~~l~~E-------lq~LlD~ki~Ld~EI~~YRkLLege 389 (546)
T KOG0977|consen 327 EDLEYQLDE----------DQRSFEQALNDKDAEIAKMREECQQLSVE-------LQKLLDTKISLDAEIAAYRKLLEGE 389 (546)
T ss_pred HHHHhhhhh----------hhhhhhhhhhhHHHHHHHHHHHHHHHHHH-------HHHhhchHhHHHhHHHHHHHHhccc
Confidence 777666543 23334455666666666666666554443 4567789999999999999766543
No 53
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=95.31 E-value=2 Score=51.56 Aligned_cols=343 Identities=18% Similarity=0.256 Sum_probs=185.3
Q ss_pred chhhhhhhhhhcccc---chhhhhhHHHHHHHHH--------hhcCCccccc--cCCCccchH--HHHHHHHHHHhh---
Q 008522 41 CTMTVLTRVDLDLAY---SSEKLVNLHVLLMYLL--------ARGDDLETLV--MENSDVAAT--SIEKALVYDLLF--- 102 (563)
Q Consensus 41 ~~~~~ltrveldla~---~SEKl~NL~~l~M~l~--------~~~~d~E~~~--~~~~~i~~~--s~eka~efDlL~--- 102 (563)
+=..|||-+-++|.+ +++.=.||.-|+=.=. -.-..+.|+- -..++|..+ -=..+...+++.
T Consensus 74 GKSAIltAl~lglG~rAs~tnRgsslK~lIK~G~~~A~IsItL~N~G~~Afk~eiyG~~IiIER~I~~~~S~~~~~~~~~ 153 (1074)
T KOG0250|consen 74 GKSAILTALTLGLGGRASATNRGSSLKDLIKDGCSSAKISITLSNSGLDAFKPEIYGNSIIIERTIRRSSSTYYLLRSAN 153 (1074)
T ss_pred cHHHHHHHHHHhhccccccccchhhHHHHHhCCCcceEEEEEEecCCcccCChhhcCCeeEEEEeeccccchHHHHhhcc
Confidence 346788888888755 4566667766653211 1122344443 222333110 001133344443
Q ss_pred -hhhhhhHHhHHHHHHHHHhhhhcccceeccccchhhHHHHHHHhhh--hhhhhHhhHHHHHHHHHHHHHhhHhhhhhhh
Q 008522 103 -GILDSELREVERLLDTIHVEIVNVHHKISSCKHLREVFTIMEKMEK--KLHDCEGSLKESQEHVSELKMQSAKFQRVLS 179 (563)
Q Consensus 103 -gildSEv~Ele~~~~~lq~~I~~~~~~~~s~~~~~~~f~~~~~~~~--kL~~~~~sLkq~qe~~~eik~qsa~f~r~~~ 179 (563)
.++-.=..+|+.+++..-..+.|---+.+.... +-|..=.+=.. ||==---.|.|+.+-.+.|=.-.-.+...|+
T Consensus 154 grvVStKk~dl~~vv~~f~I~veNP~~~lsQD~a--R~FL~~~~p~dkYklfmkaT~L~qi~~~~~~~~~~~~~~~~~i~ 231 (1074)
T KOG0250|consen 154 GRVVSTKKEDLDTVVDHFNIQVENPMFVLSQDAA--RSFLANSNPKDKYKLFMKATQLEQITESYSEIMESLDHAKELID 231 (1074)
T ss_pred CccccccHHHHHHHHHHhCcCCCCcchhhcHHHH--HHHHhcCChHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566679999999888888775555544433 22322000000 1110111244444444444333333333331
Q ss_pred hcccCCCcccccccccCCcccccccccccchHHHHHHHHHHHHhhhhhhhHHHhhHHHhhhHHHHHhhhhhhhHHHHHHH
Q 008522 180 YFIHGNNDEALEFSANGQLSNINGKSKMKNADQQRHILRMLEKSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRME 259 (563)
Q Consensus 180 ~~~~~~~~~~~~~~e~~~~~~~~~~~~mqt~eqqR~iLrMLekSlA~EldLEkkL~~s~~~eeeLk~kL~~~eqe~~~lE 259 (563)
- .-.=+-+|+|-|+++- .++..+++++ +++.++ .+=
T Consensus 232 ~--------------------------------~~e~i~~l~k~i~e~~---e~~~~~~~~e-~~~~~l---~~L----- 267 (1074)
T KOG0250|consen 232 L--------------------------------KEEEIKNLKKKIKEEE---EKLDNLEQLE-DLKENL---EQL----- 267 (1074)
T ss_pred H--------------------------------HHhhhHHHHHHHHHHH---HHHHHHHHHH-HHHHHH---HHH-----
Confidence 1 1112555555555432 2232222221 122222 221
Q ss_pred HHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhcccchhchhHHHHHHHhHHHHH-------hhhhHHHHHhhhcC
Q 008522 260 EAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQL-------KAKDMVLQKLESTK 332 (563)
Q Consensus 260 E~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL-------~~k~~~Lekl~~s~ 332 (563)
-++-+|-..++-++...-+...-+-.+.|.-..+-.+.-.-.+=.+++.|+.+.+.++ .+++.+++.+..+
T Consensus 268 -k~k~~W~~V~~~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~- 345 (1074)
T KOG0250|consen 268 -KAKMAWAWVNEVERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKD- 345 (1074)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHH-
Confidence 1345777777777766655555555555555555544444444444444444444444 3455555555554
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHH-HHHHHHHHhhhhhhhhHHHHHhhhhhhhHHHHH
Q 008522 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFI-ESLKESLYGAESRAESAEEKVTQLTDTNLELSE 411 (563)
Q Consensus 333 ~SE~~sL~eKv~sLEeQLkese~Ql~~akas~ea~~~~isdmEn~I-edLK~kvskAESRAe~AEskc~lLteTN~EL~e 411 (563)
+..+.-.+..++.+.++++......+...+.+..+|++.+.-. .++.....+.|.+..+-..++.-|.+-+..|.+
T Consensus 346 ---~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~ 422 (1074)
T KOG0250|consen 346 ---LDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLRE 422 (1074)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566777888888888888888888888888888776544 888888888888888888888888888888888
Q ss_pred HHhhhhcCCCCcchhhhhhHHHH
Q 008522 412 EINFLKGNNDSNTKKVGILENQL 434 (563)
Q Consensus 412 EL~~Lks~~ss~~ek~~~LE~qL 434 (563)
|++.++......-+.....++.+
T Consensus 423 e~~~~~~~~~~~~ee~~~i~~~i 445 (1074)
T KOG0250|consen 423 ELNEVKEKAKEEEEEKEHIEGEI 445 (1074)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHH
Confidence 88888776332223333344433
No 54
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=95.08 E-value=3.4 Score=41.28 Aligned_cols=165 Identities=19% Similarity=0.205 Sum_probs=93.4
Q ss_pred HHhhhHHHHHHHHHHHHhhhhhhhhHHHHHhhhhhhhHHHHHHHhhhhcCCCCcchhhhhhHHHHhhHHHHHHHhHhhhh
Q 008522 370 QLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSE 449 (563)
Q Consensus 370 ~isdmEn~IedLK~kvskAESRAe~AEskc~lLteTN~EL~eEL~~Lks~~ss~~ek~~~LE~qLkese~QLqhA~As~e 449 (563)
.+.|++.-+..|.+...+-.- ...-..++|..|.+++..||.+ ++- +|||.--+.
T Consensus 9 ~v~dL~~~n~~L~~en~kL~~-------~ve~~ee~na~L~~e~~~L~~q--------------~~s----~Qqal~~aK 63 (193)
T PF14662_consen 9 CVEDLQLNNQKLADENAKLQR-------SVETAEEGNAQLAEEITDLRKQ--------------LKS----LQQALQKAK 63 (193)
T ss_pred HHHHHHHHhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH--------------HHH----HHHHHHHHH
Confidence 344444444444444433322 2334556777777777777764 332 245554444
Q ss_pred hhHHHHHhHHHHHhhHHHHHHHHHHhhhhhhhhchhhhhhhcccccchhhhhhhhhhHHhHHHHH-------HHhHHHHH
Q 008522 450 ASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKIL-------ESSLNRAN 522 (563)
Q Consensus 450 As~eqQ~ml~sti~DME~vIedLksKv~kaE~rae~~E~kc~~LsEtN~eLneELsflrsk~~~L-------E~sL~~A~ 522 (563)
|-.+.-.-|.+.++-+|-.=.-|-......|++..++..+...|-+.|-+|.-|..-+..|.+.| ...++.-.
T Consensus 64 ~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e 143 (193)
T PF14662_consen 64 ALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFE 143 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHH
Confidence 44444444566666666666666666666777777777778888888888888888877777776 22232222
Q ss_pred HHHHhhHHHHHHHhHHHHHH----------HHHHHHHHHHHHHHHHH
Q 008522 523 IEKAASAKEVNHRTKLMMEM----------VMQLATQRELIQKQVLI 559 (563)
Q Consensus 523 ~~K~~TakdI~~~tK~i~dL----------v~qLa~ERErL~~Qiss 559 (563)
.....--.-+.-+|+-|.+| +..|-.|.-||..|++-
T Consensus 144 ~l~~~~da~l~e~t~~i~eL~~~ieEy~~~teeLR~e~s~LEeql~q 190 (193)
T PF14662_consen 144 SLICQRDAILSERTQQIEELKKTIEEYRSITEELRLEKSRLEEQLSQ 190 (193)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 21111112222233334433 45566777788887754
No 55
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=95.06 E-value=0.52 Score=44.61 Aligned_cols=96 Identities=21% Similarity=0.203 Sum_probs=71.9
Q ss_pred HHHhhhhcCCCCcchhhhhhHHHHhhHHHHHHHhHhhhhhhHHHHHhHHHHHhhHHHHHHHHHHhhhhhhhhchhhhhhh
Q 008522 411 EEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQC 490 (563)
Q Consensus 411 eEL~~Lks~~ss~~ek~~~LE~qLkese~QLqhA~As~eAs~eqQ~ml~sti~DME~vIedLksKv~kaE~rae~~E~kc 490 (563)
++|..-++.+++.-+++.+||+.|..+...++++..-+++++. +|+.|+.+++..-+.....+..-
T Consensus 10 ~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~--------------eie~L~~el~~lt~el~~L~~EL 75 (140)
T PF10473_consen 10 EKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKA--------------EIETLEEELEELTSELNQLELEL 75 (140)
T ss_pred HHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555556678999999999998888888877777765 45555666665555555666668
Q ss_pred cccccchhhhhhhhhhHHhHHHHHHHhHHH
Q 008522 491 IVLSEDNFELKNKQSFMRDKIKILESSLNR 520 (563)
Q Consensus 491 ~~LsEtN~eLneELsflrsk~~~LE~sL~~ 520 (563)
..|+..+-.|.+++--..+|+..||....-
T Consensus 76 ~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~ 105 (140)
T PF10473_consen 76 DTLRSEKENLDKELQKKQEKVSELESLNSS 105 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 889999999999999999999999876544
No 56
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=94.63 E-value=16 Score=45.17 Aligned_cols=175 Identities=20% Similarity=0.231 Sum_probs=84.6
Q ss_pred HHHHHHhhhhhhhHHHhhHHHhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhcc-chHHHHhhhhHHHHhhhhHHh-
Q 008522 217 LRMLEKSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAE-NSAEVLMGISKEMLGRFQIVQ- 294 (563)
Q Consensus 217 LrMLekSlA~EldLEkkL~~s~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAE-Na~EvL~g~skel~gkLq~~q- 294 (563)
=|.|||+=|.-=-.++...+.+.+..+++.=|..-.-.-..+|+.|+.|-+.++-++ -.++-|+|.-++-+.+|..+.
T Consensus 1453 q~~~~~a~as~~q~~~s~~el~~Li~~v~~Flt~~~adp~si~~vA~~vL~l~lp~tpeqi~~L~~~I~e~v~sL~nVd~ 1532 (1758)
T KOG0994|consen 1453 QRALEQANASRSQMEESNRELRNLIQQVRDFLTQPDADPDSIEEVAEEVLALELPLTPEQIQQLTGEIQERVASLPNVDA 1532 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcccHHH
Confidence 456666666666666666666666666666555544445556666666665555443 234455555555555554444
Q ss_pred ----------------hhcccchhchhHHHHHHHhHHHHHhhhhHHHHHhhhcCchhhhhHHHHHHHHHHHHHHHHHHHh
Q 008522 295 ----------------FNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQ 358 (563)
Q Consensus 295 ----------------f~L~as~~REsel~sKL~~~~eqL~~k~~~Lekl~~s~~SE~~sL~eKv~sLEeQLkese~Ql~ 358 (563)
..-+.+..+=.+++.+-++-.+.|+.-+.+....... .+....-+...+.-|...+....
T Consensus 1533 IL~~T~~di~ra~~L~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~a----i~~a~~~~~~a~~~l~kv~~~t~ 1608 (1758)
T KOG0994|consen 1533 ILSRTKGDIARAENLQSEAERARSRAEDVKGQAEDVVEALEEADVAQGEAQDA----IQGADRDIRLAQQLLAKVQEETA 1608 (1758)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhhHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444333332222221 00001111112222222222222
Q ss_pred hhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhH
Q 008522 359 NANACFQTSQEQLNEMDNFIESLKESLYGAESRAESA 395 (563)
Q Consensus 359 ~akas~ea~~~~isdmEn~IedLK~kvskAESRAe~A 395 (563)
.|.+.+-..-.++++++..++.||-++.+----|.+|
T Consensus 1609 ~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a 1645 (1758)
T KOG0994|consen 1609 AAEKLATSATQQLGELETRMEELKHKAAQNSAEAKQA 1645 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 2222222234578889999999998876533333333
No 57
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.61 E-value=0.81 Score=53.58 Aligned_cols=129 Identities=23% Similarity=0.236 Sum_probs=84.1
Q ss_pred hhhhhhHHHHHHHhhhhcCCCCcchhhhhhHHHHhhHHHHHHHhHhhhhhhHHHHHhHHHHHhhHHHHHHHHHH------
Q 008522 401 QLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKS------ 474 (563)
Q Consensus 401 lLteTN~EL~eEL~~Lks~~ss~~ek~~~LE~qLkese~QLqhA~As~eAs~eqQ~ml~sti~DME~vIedLks------ 474 (563)
...+.+.-.+++|+.++...-+...+.+.|.++|.+.+.-.+.-+|....-...|+-+.-..+|=|.|||+++.
T Consensus 727 q~~e~~~t~~eel~a~~~e~k~l~~~q~~l~~~L~k~~~~~es~k~~~~~a~~~~~~~~~~~~~qeqv~El~~~l~e~~~ 806 (970)
T KOG0946|consen 727 QGAEASKTQNEELNAALSENKKLENDQELLTKELNKKNADIESFKATQRSAELSQGSLNDNLGDQEQVIELLKNLSEEST 806 (970)
T ss_pred hHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchhhhhhhhHHHHHHHHHhhhhhhh
Confidence 34455666667777777764434557778888885555555555555553344455566677777788887333
Q ss_pred -------h--------------hhhhhhhchhhhhhhcccccchhhhhhhhhhHHhHHHHHHHhHHHHHHHHHhhHH
Q 008522 475 -------K--------------VSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAK 530 (563)
Q Consensus 475 -------K--------------v~kaE~rae~~E~kc~~LsEtN~eLneELsflrsk~~~LE~sL~~A~~~K~~Tak 530 (563)
+ .+-+-...++....|..++.++-...++++.|.+|++.+ +.+-.+..+|..+.+
T Consensus 807 ~l~~~q~e~~~~keq~~t~~~~tsa~a~~le~m~~~~~~la~e~~~ieq~ls~l~~~~k~~-~nli~~ltEk~~sl~ 882 (970)
T KOG0946|consen 807 RLQELQSELTQLKEQIQTLLERTSAAADSLESMGSTEKNLANELKLIEQKLSNLQEKIKFG-NNLIKELTEKISSLE 882 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhccccchhhHHHHHHHHHHHHHHHhhhh-hhHHHHHhhhhhhHH
Confidence 1 111112235667788899999999999999999998887 666777777755544
No 58
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=94.45 E-value=16 Score=44.54 Aligned_cols=66 Identities=24% Similarity=0.288 Sum_probs=42.7
Q ss_pred ccccchhhhhhhhhhHHhHHHHHHHhHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 008522 492 VLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQV 557 (563)
Q Consensus 492 ~LsEtN~eLneELsflrsk~~~LE~sL~~A~~~K~~TakdI~~~tK~i~dLv~qLa~ERErL~~Qi 557 (563)
.+++....|..+++-++.++..++..+......=..+.+.+....+.+.+...++..-..+|..-.
T Consensus 813 ~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~l~~l~~~~ 878 (1201)
T PF12128_consen 813 ELREEKPELEEQLRDLEQELQELEQELNQLQKEVKQRRKELEEELKALEEQLEQLEEQLRRLRDLL 878 (1201)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344466777777777777777777777776666666666666666666666666655444444333
No 59
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=94.37 E-value=8.3 Score=40.95 Aligned_cols=219 Identities=22% Similarity=0.347 Sum_probs=136.5
Q ss_pred HHhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhcccchhchhH----HHHHHHhHHHHHh
Q 008522 244 LKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESE----LKSKLGDFIEQLK 319 (563)
Q Consensus 244 Lk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REse----l~sKL~~~~eqL~ 319 (563)
|+-||-.-.|-+..||-.++++.-|+..|-+=. ++=|+..-||.-+.+|+.| |+.|+..-.-+|.
T Consensus 75 L~SkLe~EKq~kerLEtEiES~rsRLaaAi~d~-----------dqsq~skrdlelafqr~rdEw~~lqdkmn~d~S~lk 143 (305)
T PF14915_consen 75 LNSKLEKEKQNKERLETEIESYRSRLAAAIQDH-----------DQSQTSKRDLELAFQRARDEWVRLQDKMNSDVSNLK 143 (305)
T ss_pred HhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhH-----------HHHHhhHHHHHHHHHHHhhHHHHHHHHhcchHHhHH
Confidence 445555556778889999999999999875432 3557778888889999988 5666654444444
Q ss_pred hhh-HHHHHhhhcCchhhhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHH
Q 008522 320 AKD-MVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEK 398 (563)
Q Consensus 320 ~k~-~~Lekl~~s~~SE~~sL~eKv~sLEeQLkese~Ql~~akas~ea~~~~isdmEn~IedLK~kvskAESRAe~AEsk 398 (563)
... ..-++|... .+-+-+|..++.-.=..|++--+-+.++.......+-++..||++.-.=..+|.+.-.+-++.+.+
T Consensus 144 d~ne~LsQqLska-esK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eER 222 (305)
T PF14915_consen 144 DNNEILSQQLSKA-ESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEER 222 (305)
T ss_pred HHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 322 122233222 233333333333333333333333444444444456688899999999999999999999999999
Q ss_pred HhhhhhhhHHHHHHHhhhhcCCCCcchhhhhhHHHHhhHHHHHHHhHhhhhhhHHHHHhHHHHHhhHHHHHHHHHHhhhh
Q 008522 399 VTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSK 478 (563)
Q Consensus 399 c~lLteTN~EL~eEL~~Lks~~ss~~ek~~~LE~qLkese~QLqhA~As~eAs~eqQ~ml~sti~DME~vIedLksKv~k 478 (563)
..+|---|+=|...|.....+|. .-| -++-|+..=+.|...|+.
T Consensus 223 L~QlqsEN~LLrQQLddA~~K~~-------~ke----------------------------k~ViniQ~~f~d~~~~L~- 266 (305)
T PF14915_consen 223 LSQLQSENMLLRQQLDDAHNKAD-------NKE----------------------------KTVINIQDQFQDIVKKLQ- 266 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHH----------------------------HHHhhHHHHHHHHHHHHH-
Confidence 88888888877776666665432 111 134444433334444432
Q ss_pred hhhhchhhhhhhcccccchhhhhhhhhhHHhHHHHHH
Q 008522 479 AESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILE 515 (563)
Q Consensus 479 aE~rae~~E~kc~~LsEtN~eLneELsflrsk~~~LE 515 (563)
|+ .+.++.+|-|.|-+|-.|-+.|+-|+--.|
T Consensus 267 ae-----~ekq~lllEErNKeL~ne~n~LkEr~~qyE 298 (305)
T PF14915_consen 267 AE-----SEKQVLLLEERNKELINECNHLKERLYQYE 298 (305)
T ss_pred HH-----HHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 22 235578888999997777777766655443
No 60
>PRK11637 AmiB activator; Provisional
Probab=94.16 E-value=9.7 Score=40.87 Aligned_cols=83 Identities=23% Similarity=0.344 Sum_probs=39.5
Q ss_pred hHHHHHHHhHHHHHhhhhHHHHHhhhcCchhhhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHH
Q 008522 305 SELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKES 384 (563)
Q Consensus 305 sel~sKL~~~~eqL~~k~~~Lekl~~s~~SE~~sL~eKv~sLEeQLkese~Ql~~akas~ea~~~~isdmEn~IedLK~k 384 (563)
++++.+|++...++......+..+ ..++..++.+++..+.++..+.......+.+|+..+.-|..+...
T Consensus 43 ~~~~~~l~~l~~qi~~~~~~i~~~-----------~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~e 111 (428)
T PRK11637 43 SDNRDQLKSIQQDIAAKEKSVRQQ-----------QQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNAS 111 (428)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666666666554444433 333444444444444444444444444444444444444444444
Q ss_pred HHhhhhhhhhHHHH
Q 008522 385 LYGAESRAESAEEK 398 (563)
Q Consensus 385 vskAESRAe~AEsk 398 (563)
|..++.+.......
T Consensus 112 I~~~q~~l~~~~~~ 125 (428)
T PRK11637 112 IAKLEQQQAAQERL 125 (428)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444333
No 61
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=93.74 E-value=7.4 Score=45.20 Aligned_cols=211 Identities=19% Similarity=0.211 Sum_probs=125.6
Q ss_pred HHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHhhhhhhhH-------HHHHHHhhh
Q 008522 344 KSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNL-------ELSEEINFL 416 (563)
Q Consensus 344 ~sLEeQLkese~Ql~~akas~ea~~~~isdmEn~IedLK~kvskAESRAe~AEskc~lLteTN~-------EL~eEL~~L 416 (563)
.-||.-++.+...+++++..-++...+++-+.+--..+|..+....-.-+..+.|+.-|+-.=- .|-..|...
T Consensus 421 ~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE 500 (697)
T PF09726_consen 421 SRLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEE 500 (697)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3688888888888888777766666666666665555666555555555555555444443322 222223333
Q ss_pred hcCCCCcchhhhhhHHHHhhHHHHHHHhH-hhhh-------hhHHHHHhHHHHHhhHHHHHHHHHHhhhhhhhhchhhhh
Q 008522 417 KGNNDSNTKKVGILENQLRDLEIQLQQAK-VSSE-------ASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEE 488 (563)
Q Consensus 417 ks~~ss~~ek~~~LE~qLkese~QLqhA~-As~e-------As~eqQ~ml~sti~DME~vIedLksKv~kaE~rae~~E~ 488 (563)
+. +-..+|+||.+-..+-..+. +++. .+.+-...+.....|||.=|.-|...+-..|.+...+|.
T Consensus 501 ~~-------~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~ 573 (697)
T PF09726_consen 501 RR-------QRASLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCRQRRRQLESELKKLRRELKQKEEQIRELES 573 (697)
T ss_pred HH-------HHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 24455555554332211111 1111 112444567888999998887777777666666666666
Q ss_pred hhccc----ccc---hhhhhhhhhhHHhHHHHHHHhHHHHHHHHHhhHHHHHHHhHH---HHHHHHHHHHHHHHHHHHHH
Q 008522 489 QCIVL----SED---NFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKL---MMEMVMQLATQRELIQKQVL 558 (563)
Q Consensus 489 kc~~L----sEt---N~eLneELsflrsk~~~LE~sL~~A~~~K~~TakdI~~~tK~---i~dLv~qLa~ERErL~~Qis 558 (563)
+.-.| .|. -=.|--.|+.++.|---||++|++-.-.|..=-.-+|--++- +...+.+=-.|..-|+..|.
T Consensus 574 ~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~ 653 (697)
T PF09726_consen 574 ELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIA 653 (697)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55322 221 123666789999999999999999999998766666655433 33444445566666777665
Q ss_pred Hhh
Q 008522 559 ILL 561 (563)
Q Consensus 559 sl~ 561 (563)
-|+
T Consensus 654 ~~~ 656 (697)
T PF09726_consen 654 QLL 656 (697)
T ss_pred HHH
Confidence 544
No 62
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=93.65 E-value=6.3 Score=39.48 Aligned_cols=136 Identities=24% Similarity=0.262 Sum_probs=77.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHhh--------------
Q 008522 336 VLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQ-------------- 401 (563)
Q Consensus 336 ~~sL~eKv~sLEeQLkese~Ql~~akas~ea~~~~isdmEn~IedLK~kvskAESRAe~AEskc~l-------------- 401 (563)
...|.+.+..|.+|++...--++-||+ ++.-++|||.-+..-|......-+.|.+
T Consensus 38 na~L~~e~~~L~~q~~s~Qqal~~aK~-----------l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~ 106 (193)
T PF14662_consen 38 NAQLAEEITDLRKQLKSLQQALQKAKA-----------LEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIET 106 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347888899999999977533444433 2333455555444444444444444444
Q ss_pred hhhhhHHHHHHHhhhhcCCCCcchhhhhhHHHHhhHHHHHHHhHhhhhhhHHHHHhHHHHHhhHHHHHHHHHHhhhhhhh
Q 008522 402 LTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAES 481 (563)
Q Consensus 402 LteTN~EL~eEL~~Lks~~ss~~ek~~~LE~qLkese~QLqhA~As~eAs~eqQ~ml~sti~DME~vIedLksKv~kaE~ 481 (563)
|-+-|..|..+..-|+.+.-..+.+-..|=+||.+++.=+-+-.|.+.-+--+..-|..+|--.-.++++|+.+.++.|.
T Consensus 107 Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~l~e~t~~i~eL~~~ieEy~~~teeLR~e~s~LEe 186 (193)
T PF14662_consen 107 LQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFESLICQRDAILSERTQQIEELKKTIEEYRSITEELRLEKSRLEE 186 (193)
T ss_pred HHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555554422223455566777776654444433443333334455666777777888888888887774
Q ss_pred h
Q 008522 482 K 482 (563)
Q Consensus 482 r 482 (563)
.
T Consensus 187 q 187 (193)
T PF14662_consen 187 Q 187 (193)
T ss_pred H
Confidence 3
No 63
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=93.52 E-value=12 Score=39.80 Aligned_cols=80 Identities=21% Similarity=0.310 Sum_probs=58.3
Q ss_pred HHHHhhHHHHHHHHHHhhhhhhhhchhhhhhhcccccchhhhhhhhhhHHhHHHHHHHhHHHHHHHHHhhHHHHHHHhHH
Q 008522 459 YSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKL 538 (563)
Q Consensus 459 ~sti~DME~vIedLksKv~kaE~rae~~E~kc~~LsEtN~eLneELsflrsk~~~LE~sL~~A~~~K~~TakdI~~~tK~ 538 (563)
..-|+.||++--.=+.||.+.-.+-+++|+...-|--.|+= ||.-+++..++- ..|.-|+-+|..+
T Consensus 192 q~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~L-------LrQQLddA~~K~----~~kek~ViniQ~~--- 257 (305)
T PF14915_consen 192 QCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENML-------LRQQLDDAHNKA----DNKEKTVINIQDQ--- 257 (305)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH----HHHHHHHhhHHHH---
Confidence 55699999999999999999999999999998888888888 444444432221 1344456666543
Q ss_pred HHHHHHHHHHHHHH
Q 008522 539 MMEMVMQLATQREL 552 (563)
Q Consensus 539 i~dLv~qLa~EREr 552 (563)
+.|+|.+|-.|+++
T Consensus 258 f~d~~~~L~ae~ek 271 (305)
T PF14915_consen 258 FQDIVKKLQAESEK 271 (305)
T ss_pred HHHHHHHHHHHHHH
Confidence 56777787777765
No 64
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=93.50 E-value=15 Score=40.93 Aligned_cols=210 Identities=20% Similarity=0.263 Sum_probs=125.2
Q ss_pred cchHHHHHHHHHHHHhhhhhhhHHHhhHHHhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHH
Q 008522 208 KNADQQRHILRMLEKSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEML 287 (563)
Q Consensus 208 qt~eqqR~iLrMLekSlA~EldLEkkL~~s~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~ 287 (563)
++.+++.+|+. ++. ..-..+++.|..+....+.|+..+-....-. .++..+-.....|.+..+...
T Consensus 197 eAeee~~~~~~--~~~-~~~~~~~~~leeae~~l~~L~~e~~~~k~Le-----------~kL~~a~~~l~~Lq~El~~~~ 262 (522)
T PF05701_consen 197 EAEEERIEIAA--ERE-QDAEEWEKELEEAEEELEELKEELEAAKDLE-----------SKLAEASAELESLQAELEAAK 262 (522)
T ss_pred HHHHHHHHHHH--HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHH
Confidence 44556666653 332 2334678888888888888887774433333 344444445555665555544
Q ss_pred h-hhhHHhhhcccchhchhHHHHHHHhHHHHHhhhhHHHHHhhhcCchhhhhHHHHHHHHHHHHHHHHHHHhhhhhchhh
Q 008522 288 G-RFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQT 366 (563)
Q Consensus 288 g-kLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~Lekl~~s~~SE~~sL~eKv~sLEeQLkese~Ql~~akas~ea 366 (563)
. ++.... ........+...|.+....|+.-...|++.. .|..+|+..|.+|...|.....-+..++..
T Consensus 263 ~~~l~~~~----~~~~~~~~~~~~l~s~~~ELe~ak~~L~~~k----~E~~~L~~~vesL~~ELe~~K~el~~lke~--- 331 (522)
T PF05701_consen 263 ESKLEEEA----EAKEKSSELQSSLASAKKELEEAKKELEKAK----EEASSLRASVESLRSELEKEKEELERLKER--- 331 (522)
T ss_pred HHHHhhhH----HhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 3 222211 3556677788888899989988888888765 578899999999988876555555544443
Q ss_pred hHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHh-------hhhhhhHHHHHHHhhhhcCCCCcchhhhhhHHHHhhHHH
Q 008522 367 SQEQLNEMDNFIESLKESLYGAESRAESAEEKVT-------QLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEI 439 (563)
Q Consensus 367 ~~~~isdmEn~IedLK~kvskAESRAe~AEskc~-------lLteTN~EL~eEL~~Lks~~ss~~ek~~~LE~qLkese~ 439 (563)
.......|..|+.++.++.++.+.+..... -|+.+=-+++.|....|. .+...-..+...-.
T Consensus 332 ----e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lqql~~Eae~Ak~-------ea~~~~~E~~~~k~ 400 (522)
T PF05701_consen 332 ----EKEASSEVSSLEAELNKTRSELEAAKAEEEKAKEAMSELPKALQQLSSEAEEAKK-------EAEEAKEEVEKAKE 400 (522)
T ss_pred ----HHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 344444455555555555555544444333 333344444444444443 24444555666667
Q ss_pred HHHHhHhhhhhhHH
Q 008522 440 QLQQAKVSSEASQE 453 (563)
Q Consensus 440 QLqhA~As~eAs~e 453 (563)
+++++++.+.+-..
T Consensus 401 E~e~~ka~i~t~E~ 414 (522)
T PF05701_consen 401 EAEQTKAAIKTAEE 414 (522)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777776654
No 65
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=93.28 E-value=19 Score=41.30 Aligned_cols=109 Identities=19% Similarity=0.154 Sum_probs=75.0
Q ss_pred HHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHhhhhhhhHHHHH-----------HHhhhhcCCCCcchhhhhhHHHHhh
Q 008522 368 QEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSE-----------EINFLKGNNDSNTKKVGILENQLRD 436 (563)
Q Consensus 368 ~~~isdmEn~IedLK~kvskAESRAe~AEskc~lLteTN~EL~e-----------EL~~Lks~~ss~~ek~~~LE~qLke 436 (563)
++.++.+.++|+++++-+..-+.++..|+++|.+.-+++.++.. +|..|+.. .+-.....+..++.
T Consensus 445 q~~~~~~~~~i~E~~~~l~~~~~el~~~~~~~~~~k~e~eee~~k~~~E~e~le~~l~~l~l~---~~~~m~~a~~~v~s 521 (581)
T KOG0995|consen 445 QEHFSNKASTIEEKIQILGEIELELKKAESKYELKKEEAEEEWKKCRKEIEKLEEELLNLKLV---LNTSMKEAEELVKS 521 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 34777999999999999999999999999999999999988765 24444332 23345566777788
Q ss_pred HHHHHHHhHhhhhhhHHH-----HHhHHHHHhhHH---HHHHHHHHhhhhh
Q 008522 437 LEIQLQQAKVSSEASQEQ-----QSMLYSAIWDME---TLIEDLKSKVSKA 479 (563)
Q Consensus 437 se~QLqhA~As~eAs~eq-----Q~ml~sti~DME---~vIedLksKv~ka 479 (563)
.+..++.++++.+--..+ +..+-.++..+. .=|+|++..+.++
T Consensus 522 ~e~el~~~~~~~~eer~ki~~ql~~~i~~i~~~k~~iqs~le~~k~~~~~~ 572 (581)
T KOG0995|consen 522 IELELDRMVATGEEERQKIAKQLFAVIDQISDFKVSIQSSLENLKADLHKE 572 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888776554321 222233444444 4456666665543
No 66
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=92.93 E-value=18 Score=40.16 Aligned_cols=111 Identities=23% Similarity=0.291 Sum_probs=57.1
Q ss_pred HHHHHHHHHHhhhhhchhhhHH----HHhhhHHHHHHHHHHHHhhhhhhhhHHHHHhhhhhhhHHHHHHHhhhhcCCCCc
Q 008522 348 EQLKESEIRLQNANACFQTSQE----QLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSN 423 (563)
Q Consensus 348 eQLkese~Ql~~akas~ea~~~----~isdmEn~IedLK~kvskAESRAe~AEskc~lLteTN~EL~eEL~~Lks~~ss~ 423 (563)
.+++-+..-..+.++....+.. -+.+=|..|..||.+...-......+-.++. +|..|...++..
T Consensus 221 ~~l~l~~~~~~~~~~el~~Yk~kA~~iLq~kEklI~~LK~~~~~~~~~~~~~~~el~-------~l~~E~~~~~ee---- 289 (511)
T PF09787_consen 221 EQLELLKAEGESEEAELQQYKQKAQRILQSKEKLIESLKEGCLEEGFDSSTNSIELE-------ELKQERDHLQEE---- 289 (511)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccccccccchhcch-------hhHHHHHHHHHH----
Confidence 3333333334455555555553 3457888999999844431111111112222 344455555543
Q ss_pred chhhhhhHHHHhhHHHHHHHhHhhhhhhHHHHHhHHHHHhhHHHHHHHHHHh
Q 008522 424 TKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSK 475 (563)
Q Consensus 424 ~ek~~~LE~qLkese~QLqhA~As~eAs~eqQ~ml~sti~DME~vIedLksK 475 (563)
...|+.||.....+++++.+......+ .+..-...++..+.-+.++
T Consensus 290 ---~~~l~~Qi~~l~~e~~d~e~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 335 (511)
T PF09787_consen 290 ---IQLLERQIEQLRAELQDLEAQLEGEQE---SFREQPQELSQQLEPELTT 335 (511)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHhch
Confidence 566666776666666666654444322 3444455555555555554
No 67
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=92.88 E-value=19 Score=40.23 Aligned_cols=177 Identities=18% Similarity=0.242 Sum_probs=100.6
Q ss_pred hHHHHHHHhHHHHHhhhhHHHHHhhhcC-c------hhhhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHH
Q 008522 305 SELKSKLGDFIEQLKAKDMVLQKLESTK-N------SEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNF 377 (563)
Q Consensus 305 sel~sKL~~~~eqL~~k~~~Lekl~~s~-~------SE~~sL~eKv~sLEeQLkese~Ql~~akas~ea~~~~isdmEn~ 377 (563)
.+|.+||...-..+......|......+ + ...-.++..+.+....|.+....|+.++.........+..+.+-
T Consensus 238 k~Le~kL~~a~~~l~~Lq~El~~~~~~~l~~~~~~~~~~~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~E 317 (522)
T PF05701_consen 238 KDLESKLAEASAELESLQAELEAAKESKLEEEAEAKEKSSELQSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSE 317 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556555555554444444444321 1 11223334456666666666666666665555555555555666
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHhhhhhhhHHHHHHHhhhhcCCCCcchhhhhhHHHHhhHHHHHHHhHhhhhhhHHHHHh
Q 008522 378 IESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSM 457 (563)
Q Consensus 378 IedLK~kvskAESRAe~AEskc~lLteTN~EL~eEL~~Lks~~ss~~ek~~~LE~qLkese~QLqhA~As~eAs~eqQ~m 457 (563)
++..|..+.....|...+.+.+..|..-=..+..+|...+.......+....+-..|+......+.|+.-+...+..-..
T Consensus 318 Le~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~ 397 (522)
T PF05701_consen 318 LEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKAKEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEK 397 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666666555554555556655555422122345668888888888888888777666655555
Q ss_pred HHHHHhhHHHHHHHHHHhhhhhhh
Q 008522 458 LYSAIWDMETLIEDLKSKVSKAES 481 (563)
Q Consensus 458 l~sti~DME~vIedLksKv~kaE~ 481 (563)
+...+......|.....++.-+..
T Consensus 398 ~k~E~e~~ka~i~t~E~rL~aa~k 421 (522)
T PF05701_consen 398 AKEEAEQTKAAIKTAEERLEAALK 421 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555556555555544433
No 68
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=92.86 E-value=4.8 Score=38.28 Aligned_cols=102 Identities=25% Similarity=0.268 Sum_probs=67.3
Q ss_pred HHhhhcCchhhhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHhhhhhh
Q 008522 326 QKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDT 405 (563)
Q Consensus 326 ekl~~s~~SE~~sL~eKv~sLEeQLkese~Ql~~akas~ea~~~~isdmEn~IedLK~kvskAESRAe~AEskc~lLteT 405 (563)
++|..+ .++.-+|.++|-+||..|..++.....+...++.+...+.+ |+..++..-+.-...+....-|+.-
T Consensus 10 ~kLK~~-~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~-------L~~el~~lt~el~~L~~EL~~l~sE 81 (140)
T PF10473_consen 10 EKLKES-ESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIET-------LEEELEELTSELNQLELELDTLRSE 81 (140)
T ss_pred HHHHHH-HHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444 57788999999999999999999888877776655555444 4444444444455555556666666
Q ss_pred hHHHHHHHhhhhcCCCCcchhhhhhHHHHhhHHHHHH
Q 008522 406 NLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQ 442 (563)
Q Consensus 406 N~EL~eEL~~Lks~~ss~~ek~~~LE~qLkese~QLq 442 (563)
+..|..++.-.+++ +..||.....+...|+
T Consensus 82 k~~L~k~lq~~q~k-------v~eLE~~~~~~~~~l~ 111 (140)
T PF10473_consen 82 KENLDKELQKKQEK-------VSELESLNSSLENLLQ 111 (140)
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHhHHHHHHHH
Confidence 66666666666663 6666665555443333
No 69
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=92.58 E-value=34 Score=42.48 Aligned_cols=97 Identities=16% Similarity=0.142 Sum_probs=54.1
Q ss_pred HHHHHhhhhhhhHHHhhHHHhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHH----------------------------H
Q 008522 218 RMLEKSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGR----------------------------F 269 (563)
Q Consensus 218 rMLekSlA~EldLEkkL~~s~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er----------------------------~ 269 (563)
|.=+-+.+++=|.++ +.+-...-.+|...|+..+ |=+..+-+++. .
T Consensus 1334 R~e~l~~k~k~~f~~-~~~n~~~L~el~~~l~sL~-----L~~lne~vCG~p~apC~s~CGG~gC~~~~~cGg~sC~Ga~ 1407 (1758)
T KOG0994|consen 1334 RVEELLVKQKGDFGG-LAENSRLLVELRAELSSLP-----LTPLNEQVCGAPGAPCDSLCGGAGCRQDGTCGGLSCRGAV 1407 (1758)
T ss_pred HHHHHHHHhhhcccc-cccccHHHHHHHHHhcCCC-----CchhhHHhcCCCCCCCCCCCCCCCCCCCCCccCccccchh
Confidence 444444555666666 5555556677777777766 44444444432 2
Q ss_pred HhccchHHHHhhhhHHHHhhhhHHhhhc---ccchhchhHHHHHHHhHHHHHhh
Q 008522 270 LEAENSAEVLMGISKEMLGRFQIVQFNL---NGSLQRESELKSKLGDFIEQLKA 320 (563)
Q Consensus 270 ~EAENa~EvL~g~skel~gkLq~~qf~L---~as~~REsel~sKL~~~~eqL~~ 320 (563)
.-|++|..+-+..--.+.+++-..+--| ..+..+=++.+.|-+.+.+|-++
T Consensus 1408 t~A~~A~~~A~~~~~~l~~~~ae~eq~~~~v~ea~~~aseA~~~Aq~~~~~a~a 1461 (1758)
T KOG0994|consen 1408 TRAGGALLMAGDADTQLRSKLAEAEQTLSMVREAKLSASEAQQSAQRALEQANA 1461 (1758)
T ss_pred cccchHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3455666555555555555554444333 33444556677777777666654
No 70
>PRK09039 hypothetical protein; Validated
Probab=92.38 E-value=6.8 Score=41.53 Aligned_cols=59 Identities=10% Similarity=0.239 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHH
Q 008522 339 MKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEE 397 (563)
Q Consensus 339 L~eKv~sLEeQLkese~Ql~~akas~ea~~~~isdmEn~IedLK~kvskAESRAe~AEs 397 (563)
|++-+.-++++|...+.|+...-....--.....+++..+.+|+..+..|+.+-...+.
T Consensus 44 Ls~~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~ 102 (343)
T PRK09039 44 LSREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQA 102 (343)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555544322222222334456666666666665555544443333
No 71
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=92.27 E-value=15 Score=43.24 Aligned_cols=32 Identities=16% Similarity=0.290 Sum_probs=20.0
Q ss_pred HhhhhhhhHHHhhHHHhhhHHHHHhhhhhhhH
Q 008522 222 KSLARELDLEKKISELNQNEEQLKLKLHHTEQ 253 (563)
Q Consensus 222 kSlA~EldLEkkL~~s~~~eeeLk~kL~~~eq 253 (563)
+++-.-++-.+.+...+.+.++++.-+++...
T Consensus 441 qsv~k~v~~q~~~s~i~~ILedI~~al~~~~~ 472 (769)
T PF05911_consen 441 QSVLKLVLEQKEVSKISEILEDIEIALDSINN 472 (769)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcc
Confidence 34455555566666666777777777766554
No 72
>PRK11281 hypothetical protein; Provisional
Probab=91.95 E-value=9.7 Score=46.47 Aligned_cols=24 Identities=21% Similarity=0.210 Sum_probs=17.5
Q ss_pred cccchhhhhhhhhhHHhHHHHHHH
Q 008522 493 LSEDNFELKNKQSFMRDKIKILES 516 (563)
Q Consensus 493 LsEtN~eLneELsflrsk~~~LE~ 516 (563)
+.+.|..|+++|.-.-.|++.+-.
T Consensus 283 ~~~~N~~Ls~~L~~~t~~~~~l~~ 306 (1113)
T PRK11281 283 ELEINLQLSQRLLKATEKLNTLTQ 306 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446788888888888777776633
No 73
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=91.95 E-value=0.046 Score=61.96 Aligned_cols=100 Identities=15% Similarity=0.219 Sum_probs=0.0
Q ss_pred HHHHhHHHHHhhHHHHHHHHHHhhhhhhhhchhhhhhhcccccchhh-------hhhhhhhHHhHHHHHHHhHHHHHHHH
Q 008522 453 EQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFE-------LKNKQSFMRDKIKILESSLNRANIEK 525 (563)
Q Consensus 453 eqQ~ml~sti~DME~vIedLksKv~kaE~rae~~E~kc~~LsEtN~e-------LneELsflrsk~~~LE~sL~~A~~~K 525 (563)
++.+-+.+.+.+++..|.+|...+..+...++.++.+...+...+.. +.+|..|||.-+++.+.-....+..
T Consensus 357 ek~g~~~~~~~~l~~~~~~Le~e~~~l~~~~~~l~~~~~~~~~~~~RLerq~~L~~kE~d~LR~~L~syd~e~~~~~~~- 435 (722)
T PF05557_consen 357 EKLGSLQSELRELEEEIQELEQEKEQLLKEIEELEASLEALKKLIRRLERQKALATKERDYLRAQLKSYDKEETTMNPS- 435 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCc-
Confidence 44455667788888888888777777777777776666666655544 4678888998888877655433221
Q ss_pred HhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 008522 526 AASAKEVNHRTKLMMEMVMQLATQRELIQKQV 557 (563)
Q Consensus 526 ~~TakdI~~~tK~i~dLv~qLa~ERErL~~Qi 557 (563)
..-..+.+-+.+|+..+-..+..++.+|
T Consensus 436 ----~~~~~~~~~~~~l~~~~~~~~~ele~~l 463 (722)
T PF05557_consen 436 ----EQDTQRIKEIEDLEQLVDEYKAELEAQL 463 (722)
T ss_dssp --------------------------------
T ss_pred ----hhHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 1112345556666665554444444333
No 74
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=91.90 E-value=15 Score=36.92 Aligned_cols=179 Identities=18% Similarity=0.266 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhh----hhhhHHHHHhhhhhhhHHHHHHHhhhhc
Q 008522 343 VKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAES----RAESAEEKVTQLTDTNLELSEEINFLKG 418 (563)
Q Consensus 343 v~sLEeQLkese~Ql~~akas~ea~~~~isdmEn~IedLK~kvskAES----RAe~AEskc~lLteTN~EL~eEL~~Lks 418 (563)
+..+.+++.+++..........++.......|..+|.++...|+..-. ....+...+..+..-..++...
T Consensus 11 ~~~~~~e~~~~E~e~~~l~~k~~e~~~~~~~m~~i~~e~Ek~i~~~i~e~~~~~~~~~~~i~~~~~erdq~~~d------ 84 (207)
T PF05010_consen 11 IKKVQEEVAEKEEEEQELKKKYEELHKENQEMRKIMEEYEKTIAQMIEEKQKQKELSEAEIQKLLKERDQAYAD------ 84 (207)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHhhHHHHHHH------
Confidence 344445555555556666666666666777888888888777766433 2333333343333333333333
Q ss_pred CCCCcchhhhhhHHHHhhHHHHHHHhHhhhhhhHHHHHhHHHHHhhHHHHHHHHHHhhhhhhhhchhhhhhhcccccchh
Q 008522 419 NNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNF 498 (563)
Q Consensus 419 ~~ss~~ek~~~LE~qLkese~QLqhA~As~eAs~eqQ~ml~sti~DME~vIedLksKv~kaE~rae~~E~kc~~LsEtN~ 498 (563)
++++|+..-.+-.+.+..+..++.-+.--..|...+.|+..-|.....++...- .+|+.| |.-.|-
T Consensus 85 --------L~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK---~hAeek---L~~ANe 150 (207)
T PF05010_consen 85 --------LNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALK---AHAEEK---LEKANE 150 (207)
T ss_pred --------HHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH---HHHHHH
Confidence 556666666666667777777666653333466667777766666666654333 334433 333444
Q ss_pred hhhhhhhhHHhHHHHHHHhHHHHHHHHHhhHHHHHHHhHHHHH
Q 008522 499 ELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMME 541 (563)
Q Consensus 499 eLneELsflrsk~~~LE~sL~~A~~~K~~TakdI~~~tK~i~d 541 (563)
++.+--+.+.+.+-.|+++|..+...-.+..+.+.-+++=..+
T Consensus 151 ei~~v~~~~~~e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~E 193 (207)
T PF05010_consen 151 EIAQVRSKHQAELLALQASLKKEEMKVQSLEESLEQKTKENEE 193 (207)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444555667777766665555555444444443333
No 75
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=91.31 E-value=14 Score=44.94 Aligned_cols=147 Identities=23% Similarity=0.285 Sum_probs=90.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHhhhhhhhHHHHHHH
Q 008522 334 SEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEI 413 (563)
Q Consensus 334 SE~~sL~eKv~sLEeQLkese~Ql~~akas~ea~~~~isdmEn~IedLK~kvskAESRAe~AEskc~lLteTN~EL~eEL 413 (563)
.|+.+-.-|+..||.+++-+..++.+.+-+++..+.++.-+++.|..+.-+++.-+-+.++.|....-|.+-=.++-..+
T Consensus 676 ~e~~~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~~El~~~~~~i~~~~p~i~~i~r~l~~~e~~~~~L~~~~n~ved~i 755 (1141)
T KOG0018|consen 676 KEVSSVESKIHGLEMRLKYSKLDLEQLKRSLEQNELELQRTESEIDEFGPEISEIKRKLQNREGEMKELEERMNKVEDRI 755 (1141)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 38899999999999999999999999998888777788888888777777777666666666665554444333332221
Q ss_pred --hhhhcCCCC------------cchhhhhhHHHHhhHHHHHHHhHhhhhhhHHHHHhHHHHHhhHHHHHHHHHHhhhhh
Q 008522 414 --NFLKGNNDS------------NTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKA 479 (563)
Q Consensus 414 --~~Lks~~ss------------~~ek~~~LE~qLkese~QLqhA~As~eAs~eqQ~ml~sti~DME~vIedLksKv~ka 479 (563)
+|-+.-|.. -.+|.-.+++|+-.++.||+--+- .++ +..=.+....+.|.+.-|+.++....-+
T Consensus 756 f~~f~~~igv~ir~Yee~~~~~~~a~k~~ef~~q~~~l~~~l~fe~~-~d~-~~~ve~~~~~v~~~~~~~~~~~~~e~~~ 833 (1141)
T KOG0018|consen 756 FKGFCRRIGVRIREYEERELQQEFAKKRLEFENQKAKLENQLDFEKQ-KDT-QRRVERWERSVEDLEKEIEGLKKDEEAA 833 (1141)
T ss_pred HHHhhhhcCeeeehHHHHHHHHHHHHHHHHHHHHHHHHhhhhhheec-ccH-HHHHHHHHHHHHHHHHhHHhhHHHHHHH
Confidence 222222221 134445555555555555544333 111 1112245556777777777776655444
Q ss_pred hhh
Q 008522 480 ESK 482 (563)
Q Consensus 480 E~r 482 (563)
++.
T Consensus 834 ~k~ 836 (1141)
T KOG0018|consen 834 EKI 836 (1141)
T ss_pred HHH
Confidence 433
No 76
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.14 E-value=23 Score=42.25 Aligned_cols=72 Identities=15% Similarity=0.180 Sum_probs=37.7
Q ss_pred hhhhHHHHhhhhHHhhhcccchhchhHHHHHHHhHHHHHhhhhHHHHHhhhcCchhhhhHHHHHHHHHHHHH
Q 008522 280 MGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLK 351 (563)
Q Consensus 280 ~g~skel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~Lekl~~s~~SE~~sL~eKv~sLEeQLk 351 (563)
.-+++.....++.++++++|.+.+=+-=.+.+++..+.|...+..|+.=-....|+-..|.+.+..|+-||.
T Consensus 645 ~~~~~k~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg 716 (970)
T KOG0946|consen 645 TQLAEKYHEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLG 716 (970)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 346777888999999999987765443344444433333322222211101123444455555555555554
No 77
>PRK01156 chromosome segregation protein; Provisional
Probab=90.88 E-value=38 Score=39.56 Aligned_cols=20 Identities=20% Similarity=0.436 Sum_probs=9.4
Q ss_pred hhhhhhhhHHhHHHHHHHhH
Q 008522 499 ELKNKQSFMRDKIKILESSL 518 (563)
Q Consensus 499 eLneELsflrsk~~~LE~sL 518 (563)
.|...++.++++++.++..+
T Consensus 692 ~l~~~~~~l~~~i~~l~~~~ 711 (895)
T PRK01156 692 DAKANRARLESTIEILRTRI 711 (895)
T ss_pred HHHHHHHHHHHHHHHHHhhH
Confidence 34444444555555444433
No 78
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=90.73 E-value=18 Score=35.70 Aligned_cols=146 Identities=16% Similarity=0.197 Sum_probs=89.3
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhh-----hhhhHHHHHhhhhhhhH
Q 008522 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAES-----RAESAEEKVTQLTDTNL 407 (563)
Q Consensus 333 ~SE~~sL~eKv~sLEeQLkese~Ql~~akas~ea~~~~isdmEn~IedLK~kvskAES-----RAe~AEskc~lLteTN~ 407 (563)
||+ ..|.--+..++..|.+....+..+.+.......++.+.+..+.++..+.-.|=. =|-.|-.+-....++-.
T Consensus 24 DP~-~~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~~~~~~~ 102 (219)
T TIGR02977 24 DPE-KMIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAALIEKQKAQELAE 102 (219)
T ss_pred CHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 555 245556777777777777767666666665666777777777777777766643 34445555566667777
Q ss_pred HHHHHHhhhhcCCCCcchhhhhhHHHHhhHHHHHHHhHhhhh-------hhHHHHHh---HHH-HHhhHHHHHHHHHHhh
Q 008522 408 ELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSE-------ASQEQQSM---LYS-AIWDMETLIEDLKSKV 476 (563)
Q Consensus 408 EL~eEL~~Lks~~ss~~ek~~~LE~qLkese~QLqhA~As~e-------As~eqQ~m---l~s-ti~DME~vIedLksKv 476 (563)
.|...+..++.. +..|..+|..++.+++.+++--. +-+-+..+ +.+ ...+-...++.+..|+
T Consensus 103 ~l~~~~~~~~~~-------v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~~~~~~~~~~~~~~a~~~fer~e~ki 175 (219)
T TIGR02977 103 ALERELAAVEET-------LAKLQEDIAKLQAKLAEARARQKALAIRHQAASSRLDVRRQLDSGRSDEAMARFEQYERRV 175 (219)
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHH
Confidence 777777777775 66677777777777766664433 11111111 110 1223335566677888
Q ss_pred hhhhhhchhh
Q 008522 477 SKAESKTESV 486 (563)
Q Consensus 477 ~kaE~rae~~ 486 (563)
...|.+++-.
T Consensus 176 ~~~ea~aea~ 185 (219)
T TIGR02977 176 DELEAQAESY 185 (219)
T ss_pred HHHHHHHHHh
Confidence 8777776654
No 79
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=90.26 E-value=40 Score=38.88 Aligned_cols=15 Identities=47% Similarity=0.678 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHH
Q 008522 544 MQLATQRELIQKQVL 558 (563)
Q Consensus 544 ~qLa~ERErL~~Qis 558 (563)
.||+.|.|-||+|+.
T Consensus 247 q~l~~e~e~L~~q~l 261 (617)
T PF15070_consen 247 QQLASEKEELHKQLL 261 (617)
T ss_pred HHHHHHHHHHHHHHH
Confidence 679999999999864
No 80
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=89.86 E-value=19 Score=37.07 Aligned_cols=131 Identities=19% Similarity=0.278 Sum_probs=93.0
Q ss_pred hhhhHHHHhhHHHHHHHhHhhhhhhHHHHHhHHHHHhhHHHHHHHHHHhhhhhhhhchhhhhhhcccccch--hhhhhhh
Q 008522 427 VGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDN--FELKNKQ 504 (563)
Q Consensus 427 ~~~LE~qLkese~QLqhA~As~eAs~eqQ~ml~sti~DME~vIedLksKv~kaE~rae~~E~kc~~LsEtN--~eLneEL 504 (563)
...|+...+....-|..|++--++....=.-+.-++.||++-|-.+.+-+.+++.|.+.++.+-...++.+ ..|+.|+
T Consensus 19 ~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~ 98 (239)
T COG1579 19 KDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEI 98 (239)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 34455555555555666665555543222224446788888888888888888888888888887766655 3688888
Q ss_pred hhHHhHHHHHHHhHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 008522 505 SFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQV 557 (563)
Q Consensus 505 sflrsk~~~LE~sL~~A~~~K~~TakdI~~~tK~i~dLv~qLa~ERErL~~Qi 557 (563)
.....|..+|+..|.....+...-.+.|..-..-+..+...++..+.++-.-+
T Consensus 99 ~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~ 151 (239)
T COG1579 99 QIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEV 151 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888877777777777777778777777777665433
No 81
>PRK01156 chromosome segregation protein; Provisional
Probab=89.11 E-value=52 Score=38.47 Aligned_cols=26 Identities=8% Similarity=0.070 Sum_probs=13.4
Q ss_pred hhhhhhhhHhhHHHHHHHHHHHHHhh
Q 008522 146 MEKKLHDCEGSLKESQEHVSELKMQS 171 (563)
Q Consensus 146 ~~~kL~~~~~sLkq~qe~~~eik~qs 171 (563)
++..|.+....++.....+..++.+.
T Consensus 195 ~e~eL~~~~~~i~el~~~~~~l~~~i 220 (895)
T PRK01156 195 SNLELENIKKQIADDEKSHSITLKEI 220 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555555555555554444
No 82
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=89.06 E-value=19 Score=37.14 Aligned_cols=130 Identities=18% Similarity=0.244 Sum_probs=83.1
Q ss_pred HHhhhhHHhhhcccchhchhHHHHHHHhHHHHHhh--hhHHHHHhhhcCchhhhhHHHHHHHHHHHHHHHHHHHhhhhhc
Q 008522 286 MLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKA--KDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANAC 363 (563)
Q Consensus 286 l~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~--k~~~Lekl~~s~~SE~~sL~eKv~sLEeQLkese~Ql~~akas 363 (563)
+.-.+..++..-++...+-.+++.|++...+++.+ ....+..| ++|+.++.++..+||.+|.+..-....-...
T Consensus 50 ~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL----~~E~~~ak~r~~~le~el~~l~~~~~~l~~~ 125 (239)
T COG1579 50 LEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRAL----NIEIQIAKERINSLEDELAELMEEIEKLEKE 125 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444455556666777777666632 22333333 4788888888888888888888877777666
Q ss_pred hhhhHHHHhhhHHHHHHHHHHHHhhhhhhh----hHHHHHhhhh-hhhHHHHHHHhhhhcC
Q 008522 364 FQTSQEQLNEMDNFIESLKESLYGAESRAE----SAEEKVTQLT-DTNLELSEEINFLKGN 419 (563)
Q Consensus 364 ~ea~~~~isdmEn~IedLK~kvskAESRAe----~AEskc~lLt-eTN~EL~eEL~~Lks~ 419 (563)
.+.-...+..+++-+.+.+..+..+-..+. ...+++..|+ ++|.+|-.+..-++..
T Consensus 126 i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~~~~~~~~L~~~l~~ell~~yeri~~~ 186 (239)
T COG1579 126 IEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELSSKREELKEKLDPELLSEYERIRKN 186 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhc
Confidence 666677777777777776666655544443 3566676665 5677777776666554
No 83
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=89.02 E-value=66 Score=39.54 Aligned_cols=39 Identities=13% Similarity=0.166 Sum_probs=19.3
Q ss_pred hcccccchhhhhhhhhhHHhHHHHHHHhHHHHHHHHHhh
Q 008522 490 CIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAAS 528 (563)
Q Consensus 490 c~~LsEtN~eLneELsflrsk~~~LE~sL~~A~~~K~~T 528 (563)
.--|...+-++.+.++.|+.+..++-..+..-.+++...
T Consensus 403 ~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i 441 (1074)
T KOG0250|consen 403 LEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHI 441 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 444444444455555555555555555554444444443
No 84
>PRK11281 hypothetical protein; Provisional
Probab=88.82 E-value=69 Score=39.54 Aligned_cols=189 Identities=19% Similarity=0.138 Sum_probs=101.7
Q ss_pred HHhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhcccchhch----hHHHHHHHhHHHHHh
Q 008522 244 LKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRE----SELKSKLGDFIEQLK 319 (563)
Q Consensus 244 Lk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~RE----sel~sKL~~~~eqL~ 319 (563)
|..+|...++...........+...+..+.+..|--+....+.+.|+|.+...|++..--. ...+-+|..-..-++
T Consensus 126 LEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L~~~~~~~~~l~~~~~~~l~ae~~~l~ 205 (1113)
T PRK11281 126 LESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQALLN 205 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHHHHH
Confidence 5555555566666677778888899999999999999999999999999999998843221 122334433333333
Q ss_pred hhhHHHHHhhhcCchhhhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHH--
Q 008522 320 AKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEE-- 397 (563)
Q Consensus 320 ~k~~~Lekl~~s~~SE~~sL~eKv~sLEeQLkese~Ql~~akas~ea~~~~isdmEn~IedLK~kvskAESRAe~AEs-- 397 (563)
++...++..-.+ .+.-+.|. ..|..-+++..+..+.++..+.+.|..-..+- ||.++..|+.
T Consensus 206 ~~~~~~~~~l~~-~~~l~~l~-------------~~q~d~~~~~~~~~~~~~~~lq~~in~kr~~~--se~~~~~a~~~~ 269 (1113)
T PRK11281 206 AQNDLQRKSLEG-NTQLQDLL-------------QKQRDYLTARIQRLEHQLQLLQEAINSKRLTL--SEKTVQEAQSQD 269 (1113)
T ss_pred HHHHHHHHHHhc-chHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhhh
Confidence 332222222221 22212111 11111122222222333334444443322211 1112222211
Q ss_pred ---------HHhhhhhhhHHHHHHHhhhhcCCCCcchhhhhhHHHHhhHHHHHHHhHhhhhhhHHHH
Q 008522 398 ---------KVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQ 455 (563)
Q Consensus 398 ---------kc~lLteTN~EL~eEL~~Lks~~ss~~ek~~~LE~qLkese~QLqhA~As~eAs~eqQ 455 (563)
-...+.+.|.+|...|..+-. +.+.|-.+-.....|++....+-.+.+||=
T Consensus 270 ~~~~~~~~p~i~~~~~~N~~Ls~~L~~~t~-------~~~~l~~~~~~~~~~l~~~~q~~~~i~eqi 329 (1113)
T PRK11281 270 EAARIQANPLVAQELEINLQLSQRLLKATE-------KLNTLTQQNLRVKNWLDRLTQSERNIKEQI 329 (1113)
T ss_pred hhcccCCChHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 133455778888888776544 577777777777777777766655555543
No 85
>PRK10698 phage shock protein PspA; Provisional
Probab=88.38 E-value=29 Score=34.75 Aligned_cols=146 Identities=16% Similarity=0.216 Sum_probs=76.5
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhh-----hhhHHHHHhhhhhhhH
Q 008522 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESR-----AESAEEKVTQLTDTNL 407 (563)
Q Consensus 333 ~SE~~sL~eKv~sLEeQLkese~Ql~~akas~ea~~~~isdmEn~IedLK~kvskAESR-----Ae~AEskc~lLteTN~ 407 (563)
||+ ..|.--+..+++.+.+....+..+.+.......++.+.+..+.+...+.-.|=.+ |-.|-.+-....+.-.
T Consensus 24 DP~-k~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~~~~~~ 102 (222)
T PRK10698 24 DPQ-KLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKLTDLIA 102 (222)
T ss_pred CHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 455 2344466666666666666666666665556666667777777776666655443 2333333344445555
Q ss_pred HHHHHHhhhhcCCCCcchhhhhhHHHHhhHHHHHHHhH----------hhhhhhHHHHHhHHH-HHhhHHHHHHHHHHhh
Q 008522 408 ELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAK----------VSSEASQEQQSMLYS-AIWDMETLIEDLKSKV 476 (563)
Q Consensus 408 EL~eEL~~Lks~~ss~~ek~~~LE~qLkese~QLqhA~----------As~eAs~eqQ~ml~s-ti~DME~vIedLksKv 476 (563)
.|..++...+.. +..|..++..+...++.|+ .++.|.+.=+.++.. ...+--..++.+..|+
T Consensus 103 ~l~~~~~~~~~~-------~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~~~~~~~~a~~~f~rmE~ki 175 (222)
T PRK10698 103 TLEHEVTLVDET-------LARMKKEIGELENKLSETRARQQALMLRHQAASSSRDVRRQLDSGKLDEAMARFESFERRI 175 (222)
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHH
Confidence 555555555554 4445555555555554444 122222211111111 1111224566677788
Q ss_pred hhhhhhchhh
Q 008522 477 SKAESKTESV 486 (563)
Q Consensus 477 ~kaE~rae~~ 486 (563)
...|.+++.+
T Consensus 176 ~~~Ea~aea~ 185 (222)
T PRK10698 176 DQMEAEAESH 185 (222)
T ss_pred HHHHHHHhHh
Confidence 8778777765
No 86
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=87.97 E-value=15 Score=36.46 Aligned_cols=46 Identities=28% Similarity=0.443 Sum_probs=32.9
Q ss_pred HHHHHHhhhhhhhhchhhhhhhcccccchhhhhhhhhhHHhHHHHHHHhHHHHHHHH
Q 008522 469 IEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEK 525 (563)
Q Consensus 469 IedLksKv~kaE~rae~~E~kc~~LsEtN~eLneELsflrsk~~~LE~sL~~A~~~K 525 (563)
.-++++|.-|.+ .+|..|.-||-+- ++-.+|+..||.+|..-.+.+
T Consensus 112 ~~~~~~klekLe----~LE~E~~rLt~~Q-------~~ae~Ki~~LE~KL~eEehqR 157 (178)
T PF14073_consen 112 QSELQAKLEKLE----KLEKEYLRLTATQ-------SLAETKIKELEEKLQEEEHQR 157 (178)
T ss_pred hhhHHHHHHHHH----HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 445676666554 6677798777654 447899999999998876543
No 87
>PF15294 Leu_zip: Leucine zipper
Probab=87.87 E-value=19 Score=37.97 Aligned_cols=160 Identities=18% Similarity=0.253 Sum_probs=105.1
Q ss_pred hHHHHHhhhhhhhHHHHHHHh------hhhcCCCCcchhhhhhHHH-HhhHHHHHHHhHhhhhh--hHHHHHhHHHHHhh
Q 008522 394 SAEEKVTQLTDTNLELSEEIN------FLKGNNDSNTKKVGILENQ-LRDLEIQLQQAKVSSEA--SQEQQSMLYSAIWD 464 (563)
Q Consensus 394 ~AEskc~lLteTN~EL~eEL~------~Lks~~ss~~ek~~~LE~q-Lkese~QLqhA~As~eA--s~eqQ~ml~sti~D 464 (563)
..|++.+--.+||+-|=..|= -||-+.+ .+.||++ |-+-=...+.+-+++.. +..-.......+.+
T Consensus 49 ~vesEL~N~~htn~lllrql~~qAek~~lkl~~d-----iselEn~eLLe~i~~~E~~~~~~~~~~~~~~~~~KL~pl~e 123 (278)
T PF15294_consen 49 EVESELINTSHTNVLLLRQLFSQAEKWYLKLQTD-----ISELENRELLEQIAEFEKQEFTSSFKPNQETSKPKLEPLNE 123 (278)
T ss_pred HHHHHHHhHHHhHHHHHHHHHHHHHHHHHHhccc-----HHHHHHHHHHHHHHHHHHhhhcccCCccccccccccccccc
Confidence 346666777788887766532 2333332 4444443 33322233344444443 11111111222322
Q ss_pred ------HHHHHHHHHHhhhhhhhhchhhhhhhcccccchhhhhhhhhhHHh----------------HHHHHHHhHHHHH
Q 008522 465 ------METLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRD----------------KIKILESSLNRAN 522 (563)
Q Consensus 465 ------ME~vIedLksKv~kaE~rae~~E~kc~~LsEtN~eLneELsflrs----------------k~~~LE~sL~~A~ 522 (563)
+-.-|.+|+.-.-++..|.-+.+.+|+..-+.+.+|...|.-++. .+.+||+++.++.
T Consensus 124 ~g~~~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a~lK 203 (278)
T PF15294_consen 124 SGGSELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMAALK 203 (278)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHH
Confidence 336799999999999999999999999999999999999999887 2466888888888
Q ss_pred HHHHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 008522 523 IEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVL 558 (563)
Q Consensus 523 ~~K~~TakdI~~~tK~i~dLv~qLa~ERErL~~Qis 558 (563)
.+=..|+.|.....+.+++-|.--=.+.-|.+.|++
T Consensus 204 ~e~ek~~~d~~~~~k~L~e~L~~~KhelL~~QeqL~ 239 (278)
T PF15294_consen 204 SELEKALQDKESQQKALEETLQSCKHELLRVQEQLS 239 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhh
Confidence 777778888888877777776655556666666644
No 88
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=87.75 E-value=31 Score=34.20 Aligned_cols=84 Identities=25% Similarity=0.290 Sum_probs=45.3
Q ss_pred HHHHHHHhHHHHHhhhhHHHHHhhhcCchhhhhHHHHHHHHHHHHHHHHHHHh----------hhhhchhhhHHHHhhhH
Q 008522 306 ELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQ----------NANACFQTSQEQLNEMD 375 (563)
Q Consensus 306 el~sKL~~~~eqL~~k~~~Lekl~~s~~SE~~sL~eKv~sLEeQLkese~Ql~----------~akas~ea~~~~isdmE 375 (563)
++...|+.-+.++..++...+++-..-..|...|.+-++.+++.+.+..-++. ++++.......++.+++
T Consensus 27 ~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk 106 (201)
T PF13851_consen 27 ELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLK 106 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777666666655554455666666666655555555555443 34444333444444444
Q ss_pred HHHHHHHHHHHhhh
Q 008522 376 NFIESLKESLYGAE 389 (563)
Q Consensus 376 n~IedLK~kvskAE 389 (563)
--.+.|..++.+-+
T Consensus 107 ~e~evL~qr~~kle 120 (201)
T PF13851_consen 107 WEHEVLEQRFEKLE 120 (201)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444333
No 89
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=87.27 E-value=70 Score=37.82 Aligned_cols=146 Identities=14% Similarity=0.181 Sum_probs=83.4
Q ss_pred HHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHhhhhhhhHHHHHHHhhhhcCCCCcchhhhhhHHHHhhHHHHHHHhHhh
Q 008522 368 QEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVS 447 (563)
Q Consensus 368 ~~~isdmEn~IedLK~kvskAESRAe~AEskc~lLteTN~EL~eEL~~Lks~~ss~~ek~~~LE~qLkese~QLqhA~As 447 (563)
..+.++|-.-...+...+.....+.+..--...-|-+||.+|..+|.++|.. .-.|..-++..|..++.-..+
T Consensus 505 aQE~~~~~~elKk~qedi~~~k~qee~~~kqie~Lee~~~~Lrneles~~ee---l~~k~~Ev~~kl~ksEen~r~---- 577 (786)
T PF05483_consen 505 AQETSDMALELKKQQEDINNSKKQEEKMLKQIENLEETNTQLRNELESVKEE---LKQKGEEVKCKLDKSEENARS---- 577 (786)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhhHHHhhHH----
Confidence 3355677777777788888888888888888889999999999999999986 235556666666665432211
Q ss_pred hhhhHHHHHhHHHHHhhHHHHHHHHHHhhhhhhhhchhhhhhhcccccchhhhhhhhhhHHhHHHHHHHhHHHHHH
Q 008522 448 SEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANI 523 (563)
Q Consensus 448 ~eAs~eqQ~ml~sti~DME~vIedLksKv~kaE~rae~~E~kc~~LsEtN~eLneELsflrsk~~~LE~sL~~A~~ 523 (563)
.+--.. .....|+.+++-+.-|+..|.--.+..+-+...--.|-..-..-+.-+++|..+++.|+.-+..+..
T Consensus 578 ~e~e~~---~k~kq~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e~~kk 650 (786)
T PF05483_consen 578 IECEIL---KKEKQMKILENKCNNLRKQVENKNKNIEELQQENKALKKKITAESKQSNVYEIKVNKLQEELENLKK 650 (786)
T ss_pred HHHHHh---hhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 111111 1122333333333333333332222212111111222222223344567788888888777766654
No 90
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=86.64 E-value=61 Score=36.51 Aligned_cols=89 Identities=12% Similarity=0.105 Sum_probs=46.7
Q ss_pred HHhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhcccchhchhHHHHHHHhHH
Q 008522 236 ELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFI 315 (563)
Q Consensus 236 ~s~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~sKL~~~~ 315 (563)
.++....++...|..++.....+-+....+-+ .+.+|-.+ -..+..+.+.+.-+|-+-...=|.-...|+..+
T Consensus 102 ~a~~~~~~~~~~l~~~e~~~~~i~~~l~~l~~--~e~~nr~~-----v~~l~~~y~~~rk~ll~~~~~~G~a~~~le~~l 174 (569)
T PRK04778 102 KAKHEINEIESLLDLIEEDIEQILEELQELLE--SEEKNREE-----VEQLKDLYRELRKSLLANRFSFGPALDELEKQL 174 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH-----HHHHHHHHHHHHHHHHhcCccccchHHHHHHHH
Confidence 34444555555555555555555554444433 23444333 345555666666666555555555556666666
Q ss_pred HHHhhhhHHHHHhhhc
Q 008522 316 EQLKAKDMVLQKLEST 331 (563)
Q Consensus 316 eqL~~k~~~Lekl~~s 331 (563)
.+++..=.....+.++
T Consensus 175 ~~~e~~f~~f~~l~~~ 190 (569)
T PRK04778 175 ENLEEEFSQFVELTES 190 (569)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 6666554444555544
No 91
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=86.64 E-value=92 Score=38.54 Aligned_cols=62 Identities=18% Similarity=0.207 Sum_probs=36.5
Q ss_pred HHHHhHHHHHhhHHHHHHHHHHhhhh-----hhhhchhhh---hhhcc-------cccchhhhhhhhhhHHhHHHHH
Q 008522 453 EQQSMLYSAIWDMETLIEDLKSKVSK-----AESKTESVE---EQCIV-------LSEDNFELKNKQSFMRDKIKIL 514 (563)
Q Consensus 453 eqQ~ml~sti~DME~vIedLksKv~k-----aE~rae~~E---~kc~~-------LsEtN~eLneELsflrsk~~~L 514 (563)
.|+..+...+...+.-|+.|++.+.. +|..++.++ ++... +.+.|.+|+++|.-.-.|++.+
T Consensus 208 ~q~dl~~~~~~~l~~~~~~Lq~~in~kR~~~se~~~~~~~~~~~~~~~~~~~i~~~~~~N~~Ls~~L~~~t~~~n~l 284 (1109)
T PRK10929 208 LRSELAKKRSQQLDAYLQALRNQLNSQRQREAERALESTELLAEQSGDLPKSIVAQFKINRELSQALNQQAQRMDLI 284 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555677777777777766543 122222222 23322 2367899888888888887766
No 92
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=86.43 E-value=68 Score=36.82 Aligned_cols=20 Identities=40% Similarity=0.371 Sum_probs=11.6
Q ss_pred HHHHhccchHHHHhhhhHHHHh
Q 008522 267 GRFLEAENSAEVLMGISKEMLG 288 (563)
Q Consensus 267 er~~EAENa~EvL~g~skel~g 288 (563)
.||+||+|- .|.-+.+.+.+
T Consensus 58 VR~LEaqN~--~L~~di~~lr~ 77 (546)
T KOG0977|consen 58 VRFLEAQNR--KLEHDINLLRG 77 (546)
T ss_pred HHHHHHHHH--HHHHHHHHHHh
Confidence 488999995 23334444433
No 93
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=85.48 E-value=27 Score=32.09 Aligned_cols=83 Identities=25% Similarity=0.316 Sum_probs=43.6
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHhhhhhhhHHHHHHHhhhhcCCCCcchhhhhhHHHHhhHHHHHHHhHhhhhhhH----H
Q 008522 378 IESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQ----E 453 (563)
Q Consensus 378 IedLK~kvskAESRAe~AEskc~lLteTN~EL~eEL~~Lks~~ss~~ek~~~LE~qLkese~QLqhA~As~eAs~----e 453 (563)
++....-+-.|+.+-+.--.+..- .-..|..||.. +..+..++..+...++-|++..+... +
T Consensus 33 l~~q~~~a~~Aq~~YE~El~~Ha~-------~~~~L~~lr~e-------~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~ 98 (132)
T PF07926_consen 33 LESQAKIAQEAQQKYERELVKHAE-------DIKELQQLREE-------LQELQQEINELKAEAESAKAELEESEASWEE 98 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHH-------HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 333334444444444443333333 33444444443 34444455555555555555444443 4
Q ss_pred HHHhHHHHHhhHHHHHHHHHH
Q 008522 454 QQSMLYSAIWDMETLIEDLKS 474 (563)
Q Consensus 454 qQ~ml~sti~DME~vIedLks 474 (563)
+..+|..-|.+++.=|+||..
T Consensus 99 qk~~le~e~~~~~~r~~dL~~ 119 (132)
T PF07926_consen 99 QKEQLEKELSELEQRIEDLNE 119 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455677778888888888764
No 94
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=85.19 E-value=43 Score=35.06 Aligned_cols=133 Identities=18% Similarity=0.254 Sum_probs=69.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhcccchhchhHHHHHHHhHHHHHhhhhHHHHHhhh-
Q 008522 252 EQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLES- 330 (563)
Q Consensus 252 eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~Lekl~~- 330 (563)
...|.+--=.|...|=-|= ...+.|+-..|..++..++.|.........-+..-+....+...+-...+..|..
T Consensus 125 ~~vK~~aRl~aK~~WYeWR-----~~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~ 199 (325)
T PF08317_consen 125 QLVKTYARLEAKKMWYEWR-----MQLLEGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQL 199 (325)
T ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555556777777775 6778888888888888888887766655544443333333222222222222222
Q ss_pred ------cCchhhhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHH
Q 008522 331 ------TKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAE 396 (563)
Q Consensus 331 ------s~~SE~~sL~eKv~sLEeQLkese~Ql~~akas~ea~~~~isdmEn~IedLK~kvskAESRAe~AE 396 (563)
....|+..++ ..|.+...++..-+......+.++.....-|++++.+..+..+....|+
T Consensus 200 ~~e~~~~D~~eL~~lr-------~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~ 264 (325)
T PF08317_consen 200 VEEIESCDQEELEALR-------QELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAE 264 (325)
T ss_pred HhhhhhcCHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2223333444 3444444444444444444444455555555555555555555544444
No 95
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=84.15 E-value=30 Score=34.35 Aligned_cols=98 Identities=23% Similarity=0.266 Sum_probs=57.6
Q ss_pred hhhhhhhhHHHHHhhhhhhhHHHHHHHhhhhcCCCCcchhhhhhHHHHhhHHHHHHHhHhhhhhhHHHHHhHHHHHhhHH
Q 008522 387 GAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDME 466 (563)
Q Consensus 387 kAESRAe~AEskc~lLteTN~EL~eEL~~Lks~~ss~~ek~~~LE~qLkese~QLqhA~As~eAs~eqQ~ml~sti~DME 466 (563)
+|=.+.+.+++....|- ..-++|+-.||.+--..-++...+++.+++.+.++.........-+- ++.-+++.
T Consensus 47 kAL~k~e~~e~~Lpqll---~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~-----L~~dknL~ 118 (194)
T PF15619_consen 47 KALQKYEDTEAELPQLL---QRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKK-----LSEDKNLA 118 (194)
T ss_pred HHHHHHHhhhhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHcCCch
Confidence 34455566666665554 23345555555542112356788899999988888876655443222 23344444
Q ss_pred HHHHHHHHhhhhhhhhchhhhhhhccc
Q 008522 467 TLIEDLKSKVSKAESKTESVEEQCIVL 493 (563)
Q Consensus 467 ~vIedLksKv~kaE~rae~~E~kc~~L 493 (563)
. .++|..+++.++.+++..+.+...|
T Consensus 119 e-ReeL~~kL~~~~~~l~~~~~ki~~L 144 (194)
T PF15619_consen 119 E-REELQRKLSQLEQKLQEKEKKIQEL 144 (194)
T ss_pred h-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 4677777777777766666555544
No 96
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=84.00 E-value=93 Score=36.29 Aligned_cols=236 Identities=19% Similarity=0.226 Sum_probs=130.0
Q ss_pred HHHhhhhhhhhHhhHHHHHHHHHHHHHhhHhhhhhhhhcccCCCcccccccccCCcccccccccccchHHHHHHHHHHHH
Q 008522 143 MEKMEKKLHDCEGSLKESQEHVSELKMQSAKFQRVLSYFIHGNNDEALEFSANGQLSNINGKSKMKNADQQRHILRMLEK 222 (563)
Q Consensus 143 ~~~~~~kL~~~~~sLkq~qe~~~eik~qsa~f~r~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~mqt~eqqR~iLrMLek 222 (563)
++.++..|++.--.|.+.|+.--.=|+..+.--|-|- -++++-.|..-+=|=|
T Consensus 17 le~LQreLd~~~~~l~~~Q~~S~~srk~L~e~trefk---------------------------k~~pe~k~k~~~~llK 69 (629)
T KOG0963|consen 17 LERLQRELDAEATEIAQRQDESEISRKRLAEETREFK---------------------------KNTPEDKLKMVNPLLK 69 (629)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHh---------------------------ccCcHHHHHHHHHHHH
Confidence 3445666777777777777765555555544433331 1355556666666667
Q ss_pred hhhhhhhHHHhhHHHhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhcccchh
Q 008522 223 SLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQ 302 (563)
Q Consensus 223 SlA~EldLEkkL~~s~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~ 302 (563)
+--+|+|. .+...++-|-+--+||+++.+|.---=+|-+.. ...++++- +
T Consensus 70 ~yQ~EiD~--------------------LtkRsk~aE~afl~vye~L~eaPDP~pll~sa~-~~l~k~~~------~--- 119 (629)
T KOG0963|consen 70 SYQSEIDN--------------------LTKRSKFAEAAFLDVYEKLIEAPDPVPLLASAA-ELLNKQQK------A--- 119 (629)
T ss_pred HHHHHHHH--------------------HHHHHHhhHHHHHHHHHHHhhCCCCchHHHHHH-HHhhhhhh------h---
Confidence 77777664 355677888888999999999998776666543 33344433 2
Q ss_pred chhHHHHHHHhHHHHHhhhhHHHHHhhhcCchhhhhHHHHHHHHHHHHHHHHHHHhhhhh----chhh-----hHHHHhh
Q 008522 303 RESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANA----CFQT-----SQEQLNE 373 (563)
Q Consensus 303 REsel~sKL~~~~eqL~~k~~~Lekl~~s~~SE~~sL~eKv~sLEeQLkese~Ql~~aka----s~ea-----~~~~isd 373 (563)
+++.+... ++|+..+.++.. ..++..+|.-|++.+++++.++....- ..+. ..+....
T Consensus 120 -~~e~~~lk----~~lee~~~el~~--------~k~qq~~v~~l~e~l~k~~~~~~~~ie~~a~~~e~~~~q~~~e~e~~ 186 (629)
T KOG0963|consen 120 -SEENEELK----EELEEVNNELAD--------LKTQQVTVRNLKERLRKLEQLLEIFIENAANETEEKLEQEWAEREAG 186 (629)
T ss_pred -hhhHHHHH----HHHHHHHHHHhh--------hhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222 222222223322 235566777777777777776432221 1111 1123444
Q ss_pred hHHHHHHHHHHHHhhhhhhhhHHHHHhhhhhhhHHHHHHHhhhhcCCCCcchhhhhhHHHHhhHHHHHHHhHhh----hh
Q 008522 374 MDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVS----SE 449 (563)
Q Consensus 374 mEn~IedLK~kvskAESRAe~AEskc~lLteTN~EL~eEL~~Lks~~ss~~ek~~~LE~qLkese~QLqhA~As----~e 449 (563)
+.+....+++++..||. |+..|...+.....++-.++.. +.
T Consensus 187 L~~~~~~~~~q~~~le~-----------------------------------ki~~lq~a~~~t~~el~~~~s~~dee~~ 231 (629)
T KOG0963|consen 187 LKDEEQNLQEQLEELEK-----------------------------------KISSLQSAIEDTQNELFDLKSKYDEEVA 231 (629)
T ss_pred HHHHHHHHHHHHHHHHH-----------------------------------HHHHHHHHHHhhhhHHHHHHHhhhhhhH
Confidence 44444444444444443 3445555555555555555544 33
Q ss_pred hhHHHHHhHHHHHhhHHHHHHHHHHhhhhhhhhc
Q 008522 450 ASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKT 483 (563)
Q Consensus 450 As~eqQ~ml~sti~DME~vIedLksKv~kaE~ra 483 (563)
+-..+=++++..+.|=-+.|.+|+.-+...+..+
T Consensus 232 ~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql 265 (629)
T KOG0963|consen 232 AKAAEVSLIMTELEDAQQRIVFLEREVEQLREQL 265 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455566555555578888777776666543
No 97
>PRK09039 hypothetical protein; Validated
Probab=83.99 E-value=30 Score=36.85 Aligned_cols=48 Identities=17% Similarity=0.257 Sum_probs=31.3
Q ss_pred CchhhhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHH
Q 008522 332 KNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIE 379 (563)
Q Consensus 332 ~~SE~~sL~eKv~sLEeQLkese~Ql~~akas~ea~~~~isdmEn~Ie 379 (563)
..|.+..|...+..|.+||...+.+|..+++.-...+.++.+++.-++
T Consensus 135 ~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~ 182 (343)
T PRK09039 135 ALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLN 182 (343)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468888888888888888777777777666664444444444443333
No 98
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=83.98 E-value=47 Score=32.90 Aligned_cols=136 Identities=22% Similarity=0.271 Sum_probs=64.3
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHhhhhhhhHHHHHHHhhhhcCCCCcchhhhhhHHHHhhHHHHHHHhHhhhhhhHHHHH
Q 008522 377 FIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQS 456 (563)
Q Consensus 377 ~IedLK~kvskAESRAe~AEskc~lLteTN~EL~eEL~~Lks~~ss~~ek~~~LE~qLkese~QLqhA~As~eAs~eqQ~ 456 (563)
+|..||+.|.....+....+....-+..-|-.|.+-|.-++-. +..|.++|+.++ .-+++-...+....
T Consensus 28 lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e-------~~eL~k~L~~y~----kdK~~L~~~k~rl~ 96 (201)
T PF13851_consen 28 LIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEE-------VEELRKQLKNYE----KDKQSLQNLKARLK 96 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-------HHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 3555555555555555555555555555555555555554442 555555665542 22233222222222
Q ss_pred hHHHHHhhHHHHHHHHHHhhhhhhhhchhhhhhhcc--------cccchhhhhhhhhhHHhHHHHHHHhHHHHHH
Q 008522 457 MLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIV--------LSEDNFELKNKQSFMRDKIKILESSLNRANI 523 (563)
Q Consensus 457 ml~sti~DME~vIedLksKv~kaE~rae~~E~kc~~--------LsEtN~eLneELsflrsk~~~LE~sL~~A~~ 523 (563)
.+-..+++++.=-+.|.-++.+.+.+-+.+..+... -.-.|+=|-.-|.-+...++.-+..|.....
T Consensus 97 ~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~keaqL~evl~ 171 (201)
T PF13851_consen 97 ELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQLNEVLA 171 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445555555555555555555443333333221 1124555555555555555555555554443
No 99
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=83.59 E-value=81 Score=35.33 Aligned_cols=206 Identities=24% Similarity=0.345 Sum_probs=109.3
Q ss_pred CchhhhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHhhhhhhhHHHHH
Q 008522 332 KNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSE 411 (563)
Q Consensus 332 ~~SE~~sL~eKv~sLEeQLkese~Ql~~akas~ea~~~~isdmEn~IedLK~kvskAESRAe~AEskc~lLteTN~EL~e 411 (563)
..+|++.|.+.++.|..++.+---|-..+.+... +|--..-..|.++++|.+- |+ +.|++
T Consensus 171 d~ee~kqlEe~ieeL~qsl~kd~~~~~~l~~e~n-------~~k~s~~s~~~k~l~al~l----------lv---~tLee 230 (446)
T KOG4438|consen 171 DEEEVKQLEENIEELNQSLLKDFNQQMSLLAEYN-------KMKKSSTSEKNKILNALKL----------LV---VTLEE 230 (446)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhHhhHHHHHHHHHHHHH----------HH---HHHHH
Confidence 3588999999998888888776655444444322 1111122223333333221 11 12444
Q ss_pred HHhhhhcCCCCcchhhhhhHHHHhhHHHHHHHhHhhhhhhHHHHHhHHHHHhhHHHHHHHHHHhhhhhhhhc---hhhhh
Q 008522 412 EINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKT---ESVEE 488 (563)
Q Consensus 412 EL~~Lks~~ss~~ek~~~LE~qLkese~QLqhA~As~eAs~eqQ~ml~sti~DME~vIedLksKv~kaE~ra---e~~E~ 488 (563)
.-+-|+++--+..+| |=+-+.+..--++.-+-+-..-++|+..|-.++--|.+++.|++.=.-++.+.- ++.|-
T Consensus 231 ~~~~LktqIV~sPeK---L~~~leemk~~l~k~k~~~~~l~~K~~iL~ekv~~~qti~~e~~~~lk~i~~~~~e~d~~Et 307 (446)
T KOG4438|consen 231 NANCLKTQIVQSPEK---LKEALEEMKDLLQKEKSAMVELQEKAKILEEKVTNLQTIEKELKALLKKISSDGVEYDSLET 307 (446)
T ss_pred HHHHHHHHHcCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhhhhhhhhHH
Confidence 444455441111122 222233333334443434444567788888899999999999887777776655 66666
Q ss_pred hhcccccchhhhhhhhhhHHhHHH------HHHHhHHHHHHHHHhhHHHHHHHh----HHHH------------------
Q 008522 489 QCIVLSEDNFELKNKQSFMRDKIK------ILESSLNRANIEKAASAKEVNHRT----KLMM------------------ 540 (563)
Q Consensus 489 kc~~LsEtN~eLneELsflrsk~~------~LE~sL~~A~~~K~~TakdI~~~t----K~i~------------------ 540 (563)
...+| .+|++|+.-+-...+.++ .+-..|.-+..+|..++.|...|. +.++
T Consensus 308 ~~v~l-ke~~~Le~q~e~~~~e~~~lk~~e~~~kqL~~~~kek~~~~Qd~~~r~~E~v~~~md~~~~~~n~V~~kr~a~~ 386 (446)
T KOG4438|consen 308 KVVEL-KEILELEDQIELNQLELEKLKMFENLTKQLNELKKEKESRRQDLENRKTESVKAMMDDNIEKYNVVRQKRNAKV 386 (446)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcccchhhccHH
Confidence 65555 457777654433333222 223344444445555554443331 1111
Q ss_pred -------------HHHHHHHHHHHHHHHHHHHhh
Q 008522 541 -------------EMVMQLATQRELIQKQVLILL 561 (563)
Q Consensus 541 -------------dLv~qLa~ERErL~~Qissl~ 561 (563)
++.-.++..|+.+.+||+.++
T Consensus 387 ~kie~~~~~ik~~e~~l~~~~~r~e~~~~i~aI~ 420 (446)
T KOG4438|consen 387 KKIEEKNEEIKKIELFLEIARGREELESQIVAIT 420 (446)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 122267888888999988775
No 100
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=82.45 E-value=0.41 Score=54.51 Aligned_cols=145 Identities=26% Similarity=0.293 Sum_probs=0.0
Q ss_pred HHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHhhhhhhhHHHHHHHhhhhcCCCCcchhhhhhHH---HHhhHHHHHHHh
Q 008522 368 QEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILEN---QLRDLEIQLQQA 444 (563)
Q Consensus 368 ~~~isdmEn~IedLK~kvskAESRAe~AEskc~lLteTN~EL~eEL~~Lks~~ss~~ek~~~LE~---qLkese~QLqhA 444 (563)
..++-..+.-|.+|+.+......|++..+-++..|.+.+..|..+-..|.... ..|.. .|+... .+..
T Consensus 362 ~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~l~~eke~l~~e~-------~~L~e~~eeL~~~~--~~~~ 432 (713)
T PF05622_consen 362 KSQLEEYKKQIQELEQKLSEESRRADKLEFENKQLEEKLEALEEEKERLQEER-------DSLRETNEELECSQ--AQQE 432 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhhcc--cccc
Confidence 34555666677777777777777788777788888777777666544443321 11111 111111 1100
Q ss_pred Hhh---hhhh-------HHHH-HhHHHHHhhHHHHHHHHHH--------hhhhhhhhchhhhhhhcccccchhhhhhhhh
Q 008522 445 KVS---SEAS-------QEQQ-SMLYSAIWDMETLIEDLKS--------KVSKAESKTESVEEQCIVLSEDNFELKNKQS 505 (563)
Q Consensus 445 ~As---~eAs-------~eqQ-~ml~sti~DME~vIedLks--------Kv~kaE~rae~~E~kc~~LsEtN~eLneELs 505 (563)
..+ ...+ .+-+ .-+...|-.+++=-+-|+. ++.......+.+...+.-|.+.|...++.+.
T Consensus 433 ~l~~~~~~~~~~~~~l~~El~~~~l~erl~rLe~ENk~Lk~~~e~~~~e~~~~L~~~Leda~~~~~~Le~~~~~~~~~~~ 512 (713)
T PF05622_consen 433 QLSQSGEESSSSGDNLSAELNPAELRERLLRLEHENKRLKEKQEESEEEKLEELQSQLEDANRRKEKLEEENREANEKIL 512 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccchhhhccchHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 0000 0100 0122233333322222322 2233344555566667777788888888888
Q ss_pred hHHhHHHHHHHhHHHH
Q 008522 506 FMRDKIKILESSLNRA 521 (563)
Q Consensus 506 flrsk~~~LE~sL~~A 521 (563)
.+++.++.+...|...
T Consensus 513 ~lq~qle~lq~~l~~~ 528 (713)
T PF05622_consen 513 ELQSQLEELQKSLQEQ 528 (713)
T ss_dssp ----------------
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888887776544
No 101
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=82.33 E-value=1.1e+02 Score=35.80 Aligned_cols=74 Identities=22% Similarity=0.195 Sum_probs=48.6
Q ss_pred HHHHHHHHHhhhhhhhhHHhHHHHHHHHHhhhhcccceeccccchhhHHHHHHHhhhhhhhhHhhHHHHHHHHHHHHHhh
Q 008522 92 IEKALVYDLLFGILDSELREVERLLDTIHVEIVNVHHKISSCKHLREVFTIMEKMEKKLHDCEGSLKESQEHVSELKMQS 171 (563)
Q Consensus 92 ~eka~efDlL~gildSEv~Ele~~~~~lq~~I~~~~~~~~s~~~~~~~f~~~~~~~~kL~~~~~sLkq~qe~~~eik~qs 171 (563)
.-|-|.|+=|-.-||+++++|.+-=++.+. .|+...+-. +-|=.- -=+.|+.-..--||++|..|--+-+-|
T Consensus 11 ~Wk~~dle~LQreLd~~~~~l~~~Q~~S~~----srk~L~e~t---refkk~-~pe~k~k~~~~llK~yQ~EiD~LtkRs 82 (629)
T KOG0963|consen 11 YWKRFDLERLQRELDAEATEIAQRQDESEI----SRKRLAEET---REFKKN-TPEDKLKMVNPLLKSYQSEIDNLTKRS 82 (629)
T ss_pred HHHhccHHHHHHHHHHHHHHHHhhhhhHHH----HHHHHHHhH---HHHhcc-CcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677888999999999999887665543 333322211 111110 015688888888999999999887766
Q ss_pred Hh
Q 008522 172 AK 173 (563)
Q Consensus 172 a~ 173 (563)
--
T Consensus 83 k~ 84 (629)
T KOG0963|consen 83 KF 84 (629)
T ss_pred Hh
Confidence 43
No 102
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=81.85 E-value=17 Score=40.79 Aligned_cols=74 Identities=23% Similarity=0.212 Sum_probs=61.3
Q ss_pred HHhHHHHHhhHHHHHHHHHHhhhhhhhhchhhhhhhcccccchhhhhhhhhhHHhHHHHHHHhHHHHHHHHHhhHHHHHH
Q 008522 455 QSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNH 534 (563)
Q Consensus 455 Q~ml~sti~DME~vIedLksKv~kaE~rae~~E~kc~~LsEtN~eLneELsflrsk~~~LE~sL~~A~~~K~~TakdI~~ 534 (563)
|+-+.+.-+-+|.....+++|+.+-.++ --.+.|.|..|.+.+...+++++.++..+.++...|.....||.-
T Consensus 370 ~~~~e~~kk~~e~k~~q~q~k~~k~~ke-------l~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqE 442 (493)
T KOG0804|consen 370 SSDLEAEKKIVERKLQQLQTKLKKCQKE-------LKEEREENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQE 442 (493)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445666666778888888888877776 334459999999999999999999999999999999998888877
Q ss_pred H
Q 008522 535 R 535 (563)
Q Consensus 535 ~ 535 (563)
+
T Consensus 443 Q 443 (493)
T KOG0804|consen 443 Q 443 (493)
T ss_pred H
Confidence 6
No 103
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=81.82 E-value=46 Score=36.00 Aligned_cols=131 Identities=18% Similarity=0.197 Sum_probs=57.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHhhhhhhh---HHHH
Q 008522 334 SEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTN---LELS 410 (563)
Q Consensus 334 SE~~sL~eKv~sLEeQLkese~Ql~~akas~ea~~~~isdmEn~IedLK~kvskAESRAe~AEskc~lLteTN---~EL~ 410 (563)
+....+..++..|+.++.+...... ...-.+-++..-|..++..+.+...+....... -..+| .+|.
T Consensus 247 ~~~~~l~~~l~~l~~~l~~l~~~y~-------~~hP~v~~l~~qi~~l~~~l~~~~~~~~~~~~~---~~~~~~~~~~l~ 316 (498)
T TIGR03007 247 VANSELDGRIEALEKQLDALRLRYT-------DKHPDVIATKREIAQLEEQKEEEGSAKNGGPER---GEIANPVYQQLQ 316 (498)
T ss_pred cCCCchHHHHHHHHHHHHHHHHHhc-------ccChHHHHHHHHHHHHHHHHHhhccccccCccc---ccccChHHHHHH
Confidence 3455666666666666665544322 222234444444555555443332221110000 01122 1233
Q ss_pred HHHhhhhcCCCCcchhhhhhHHHHhhHHHHHHHhHhhhhhhHHHHHhHHHHHhhH---HHHHHHHHHhhhhhhh
Q 008522 411 EEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDM---ETLIEDLKSKVSKAES 481 (563)
Q Consensus 411 eEL~~Lks~~ss~~ek~~~LE~qLkese~QLqhA~As~eAs~eqQ~ml~sti~DM---E~vIedLksKv~kaE~ 481 (563)
..+..++.. +..+..++..+..+++..+.....-...|..+..--+|. +...+.+..++..++.
T Consensus 317 ~~l~~~~~~-------~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~el~~L~Re~~~~~~~Y~~l~~r~eea~~ 383 (498)
T TIGR03007 317 IELAEAEAE-------IASLEARVAELTARIERLESLLRTIPEVEAELTQLNRDYEVNKSNYEQLLTRRESAEV 383 (498)
T ss_pred HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333332 445555555555555555444433332222222223333 4667777777766553
No 104
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=80.72 E-value=69 Score=32.58 Aligned_cols=144 Identities=20% Similarity=0.252 Sum_probs=87.1
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhh------------hhhhHHHHHh
Q 008522 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAES------------RAESAEEKVT 400 (563)
Q Consensus 333 ~SE~~sL~eKv~sLEeQLkese~Ql~~akas~ea~~~~isdmEn~IedLK~kvskAES------------RAe~AEskc~ 400 (563)
||+ -.|.-.+...+..|.+....+..+.+..-..+-++..+...++++..+.-.|=. +..+.+..|.
T Consensus 24 Dp~-~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le~~~~ 102 (225)
T COG1842 24 DPE-KMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLEDLAK 102 (225)
T ss_pred CHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 566 566666666666666666666666666666666777777777777776655533 3344455555
Q ss_pred hhhhhhHHHHHHHhhhhcCCCCcchhhhhhHHHHhhHHHHHHHhHhhhhhhHHHHHhHHH--HH--hhHHHHHHHHHHhh
Q 008522 401 QLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYS--AI--WDMETLIEDLKSKV 476 (563)
Q Consensus 401 lLteTN~EL~eEL~~Lks~~ss~~ek~~~LE~qLkese~QLqhA~As~eAs~eqQ~ml~s--ti--~DME~vIedLksKv 476 (563)
.+-....++.+-+.-||.. +..||.++.++..+.+..+|..-+-+-++.|-.+ .+ .+=....+....|+
T Consensus 103 ~~~~~~~~~~~~~~~l~~~-------~~~Le~Ki~e~~~~~~~l~ar~~~akA~~~v~~~~~~~s~~sa~~~fer~e~ki 175 (225)
T COG1842 103 ALEAELQQAEEQVEKLKKQ-------LAALEQKIAELRAKKEALKARKAAAKAQEKVNRSLGGGSSSSAMAAFERMEEKI 175 (225)
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 5555555666666666654 7788888888888777777655555544443221 11 12234455666666
Q ss_pred hhhhhhch
Q 008522 477 SKAESKTE 484 (563)
Q Consensus 477 ~kaE~rae 484 (563)
...|.+++
T Consensus 176 ee~ea~a~ 183 (225)
T COG1842 176 EEREARAE 183 (225)
T ss_pred HHHHHHHH
Confidence 66665533
No 105
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=80.08 E-value=70 Score=32.26 Aligned_cols=162 Identities=19% Similarity=0.252 Sum_probs=99.8
Q ss_pred HHHhhHHHhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhcccchhchhHHHH
Q 008522 230 LEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKS 309 (563)
Q Consensus 230 LEkkL~~s~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~s 309 (563)
+|+.+.....-.+.|..+...+-.-...+...++..+.|-..-.-.+.-+.....+++.++...-- ++....-.+|..
T Consensus 50 ~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~--~~~~~~~~~l~~ 127 (264)
T PF06008_consen 50 LEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESLNE--NGDQLPSEDLQR 127 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc--ccCCCCHHHHHH
Confidence 455566666666777777777777777788888888887776666666666666677766654433 666677889999
Q ss_pred HHHhHHHHHhhh-hHHHHHhhhc---CchhhhhHHHHHHHH-HHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHH
Q 008522 310 KLGDFIEQLKAK-DMVLQKLEST---KNSEVLTMKEKVKSL-EEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKES 384 (563)
Q Consensus 310 KL~~~~eqL~~k-~~~Lekl~~s---~~SE~~sL~eKv~sL-EeQLkese~Ql~~akas~ea~~~~isdmEn~IedLK~k 384 (563)
+|+.+..=|..- ...+...+.. --.+|..|-.+|+.. .+...+.+.-+. .....++++..=..||.+.
T Consensus 128 ~l~ea~~mL~emr~r~f~~~~~~Ae~El~~A~~LL~~v~~~~~~~~~~~~~l~~-------~i~~~L~~~~~kL~Dl~~~ 200 (264)
T PF06008_consen 128 ALAEAQRMLEEMRKRDFTPQRQNAEDELKEAEDLLSRVQKWFQKPQQENESLAE-------AIRDDLNDYNAKLQDLRDL 200 (264)
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 998887666531 1112222222 124556666666554 444443333222 2444566666666667777
Q ss_pred HHhhhhhhhhHHHHHh
Q 008522 385 LYGAESRAESAEEKVT 400 (563)
Q Consensus 385 vskAESRAe~AEskc~ 400 (563)
+-+|...+..|+..+.
T Consensus 201 l~eA~~~~~ea~~ln~ 216 (264)
T PF06008_consen 201 LNEAQNKTREAEDLNR 216 (264)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777776666664443
No 106
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=78.16 E-value=1.3e+02 Score=34.59 Aligned_cols=42 Identities=12% Similarity=-0.081 Sum_probs=24.0
Q ss_pred hHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhh
Q 008522 240 NEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMG 281 (563)
Q Consensus 240 ~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g 281 (563)
++..+..|......-..||++-...+..++-+||...+-++-
T Consensus 181 ~~~~~~~k~~~~~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~ 222 (754)
T TIGR01005 181 IAGQGAAKSESNTAAADFLAPEIADLSKQSRDAEAEVAAYRA 222 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555566666666666666666666655544
No 107
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=77.26 E-value=1e+02 Score=32.56 Aligned_cols=196 Identities=23% Similarity=0.292 Sum_probs=112.8
Q ss_pred HHHhhhhHHHHhhhhHHhhhcccchhchhHHHHHHHhHHHHHhhhhHHHHHhhhcCchhhhhHHHHHHHHHHHHHHHHHH
Q 008522 277 EVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIR 356 (563)
Q Consensus 277 EvL~g~skel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~Lekl~~s~~SE~~sL~eKv~sLEeQLkese~Q 356 (563)
+-|.+..+.+..+++.--..=.....--..|+.||++.++|.+.++.-++++-.. ..||-||.+...+
T Consensus 110 ~kFq~~L~dIq~~~ee~~~~~~k~~~eN~~L~eKlK~l~eQye~rE~~~~~~~k~------------keLE~Ql~~AKl~ 177 (309)
T PF09728_consen 110 EKFQATLKDIQAQMEEQSERNIKLREENEELREKLKSLIEQYELREEHFEKLLKQ------------KELEVQLAEAKLE 177 (309)
T ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH------------HHHHHHHHHHHHH
Confidence 3444455555554443222222223334567888888888888777666655433 3444444444443
Q ss_pred HhhhhhchhhhHHHHhh-hHHHHHHHHHHHHhhhhhhhhHHHHHhhhhhhhHHHHHHHhhhhcCCCCcchhhhhhHHHHh
Q 008522 357 LQNANACFQTSQEQLNE-MDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLR 435 (563)
Q Consensus 357 l~~akas~ea~~~~isd-mEn~IedLK~kvskAESRAe~AEskc~lLteTN~EL~eEL~~Lks~~ss~~ek~~~LE~qLk 435 (563)
-+...+..+ .++... -+.++++.. +|..+.+|-.+|...|+.--+ |..-++..|.
T Consensus 178 q~~~~~~~e--~~k~~~~~~~~l~~~~---------------~~~~~~~~E~~Lr~QL~~Y~~-------Kf~efq~tL~ 233 (309)
T PF09728_consen 178 QQQEEAEQE--KEKAKQEKEILLEEAA---------------QVQTLKETEKELREQLNLYSE-------KFEEFQDTLN 233 (309)
T ss_pred HHHHHHHhH--HHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
Confidence 332222211 111111 111222221 889999999999988876544 5666666665
Q ss_pred hHHHHHHHhHhhhhhhHHHHHhHHHHHhhHHHHHHHHHHhhhhhhhhchhhhhhhcccccchhhhhhhhhhHHhHHHHHH
Q 008522 436 DLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILE 515 (563)
Q Consensus 436 ese~QLqhA~As~eAs~eqQ~ml~sti~DME~vIedLksKv~kaE~rae~~E~kc~~LsEtN~eLneELsflrsk~~~LE 515 (563)
.|+.--. + +..-|..|-.-|..|-.......++.|..-...+-+++.+-.+.+++.-++.++..||
T Consensus 234 kSNe~F~-------t-------fk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kLe 299 (309)
T PF09728_consen 234 KSNEVFE-------T-------FKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKLE 299 (309)
T ss_pred HhHHHHH-------H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5531111 0 1112455556666666666666666666667789999999999999999999999995
Q ss_pred HhHHHHHH
Q 008522 516 SSLNRANI 523 (563)
Q Consensus 516 ~sL~~A~~ 523 (563)
+|++|..
T Consensus 300 -~LcRaLQ 306 (309)
T PF09728_consen 300 -KLCRALQ 306 (309)
T ss_pred -HHHHHHh
Confidence 5666643
No 108
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=77.13 E-value=1.8e+02 Score=35.41 Aligned_cols=83 Identities=13% Similarity=0.196 Sum_probs=46.5
Q ss_pred hHHHHHHHHHHhhhhhhhhchhhhhhhcccccchhhhhhhhhhHHhHHHHHHHhHHHHHHHHH---hhHHHHHHH-hHHH
Q 008522 464 DMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKA---ASAKEVNHR-TKLM 539 (563)
Q Consensus 464 DME~vIedLksKv~kaE~rae~~E~kc~~LsEtN~eLneELsflrsk~~~LE~sL~~A~~~K~---~TakdI~~~-tK~i 539 (563)
||+..+..|-.++.+.-.....++-|.-...+.=-.|..|+.-+-.+++.|+..+.-..+.+. +--.|.... -+.+
T Consensus 463 ~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~~~~~~qs~~~~~~~l~~~l~~KD~~~ 542 (980)
T KOG0980|consen 463 DVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRTLSNLAQSHNNQLAQLEDLLKQKDRLA 542 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 666555555555554444444444445555555567788888888888888877443333332 223333333 4455
Q ss_pred HHHHHHH
Q 008522 540 MEMVMQL 546 (563)
Q Consensus 540 ~dLv~qL 546 (563)
..+|.++
T Consensus 543 ~~~~~~~ 549 (980)
T KOG0980|consen 543 AELVARE 549 (980)
T ss_pred HHHHHHH
Confidence 5566655
No 109
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=76.40 E-value=1.9e+02 Score=35.15 Aligned_cols=78 Identities=18% Similarity=0.282 Sum_probs=47.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHhhhhhhhHHHHHHH
Q 008522 334 SEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEI 413 (563)
Q Consensus 334 SE~~sL~eKv~sLEeQLkese~Ql~~akas~ea~~~~isdmEn~IedLK~kvskAESRAe~AEskc~lLteTN~EL~eEL 413 (563)
-|..+|..|++.|+..|-+....+..++-..+..-...-.|-..|..|+..|- ..-.+...|+-.-.+|+..|
T Consensus 444 ~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarik-------E~q~kl~~l~~Ekq~l~~ql 516 (1118)
T KOG1029|consen 444 QELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIK-------ELQEKLQKLAPEKQELNHQL 516 (1118)
T ss_pred HHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHH-------HHHHHHHhhhhHHHHHHHHH
Confidence 35558999999999999999999888887766544444444444444443332 22234444544444555544
Q ss_pred hhhhc
Q 008522 414 NFLKG 418 (563)
Q Consensus 414 ~~Lks 418 (563)
....+
T Consensus 517 kq~q~ 521 (1118)
T KOG1029|consen 517 KQKQS 521 (1118)
T ss_pred HHhhh
Confidence 44333
No 110
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=74.88 E-value=1.5e+02 Score=34.90 Aligned_cols=117 Identities=26% Similarity=0.358 Sum_probs=84.7
Q ss_pred ccchHHHHHHHH--HHH-HhhhhhhhHHHhhHHHhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhh
Q 008522 207 MKNADQQRHILR--MLE-KSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGIS 283 (563)
Q Consensus 207 mqt~eqqR~iLr--MLe-kSlA~EldLEkkL~~s~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~s 283 (563)
.+.--|--.+|| -++ .-+|++ .+++...-....-+.--.+|....+++..+.+.++.+-+|+-+|..--+.|+--.
T Consensus 538 l~lL~~a~~vlreeYi~~~~~ar~-ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~ 616 (717)
T PF10168_consen 538 LELLSQATKVLREEYIEKQDLARE-EIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRV 616 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455565 222 333443 4677766666666666778899999999999999999999999999999999988
Q ss_pred HHHHhhhhHHhhhcccchhchhHHHHHHHhHHHHHhhhhHHHHH
Q 008522 284 KEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQK 327 (563)
Q Consensus 284 kel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~Lek 327 (563)
+.++.+++ ..+-....-|.+.+..|+....++.+-...+++
T Consensus 617 ~~vl~~l~---~~~P~LS~AEr~~~~EL~~~~~~l~~l~~si~~ 657 (717)
T PF10168_consen 617 DRVLQLLN---SQLPVLSEAEREFKKELERMKDQLQDLKASIEQ 657 (717)
T ss_pred HHHHHHHh---ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888775 445666667888888888888777654444433
No 111
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=74.79 E-value=51 Score=32.68 Aligned_cols=110 Identities=20% Similarity=0.241 Sum_probs=75.7
Q ss_pred HHhhhhHHhhhcccchhchhHHHHHHHhHHHHHhhhhHHHHHhhhcCchhhhhHHHHHHHHHHHHHHHHHHHhhhhhchh
Q 008522 286 MLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQ 365 (563)
Q Consensus 286 l~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~Lekl~~s~~SE~~sL~eKv~sLEeQLkese~Ql~~akas~e 365 (563)
+..-|+--=||......|=..|-+--.+...-++.++..=+++... ..|...+..++..||..+-+++.+.+.++...+
T Consensus 77 tl~~LE~~GFnV~~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~-~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke 155 (190)
T PF05266_consen 77 TLSELEEHGFNVKFLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEK-EAELKELESEIKELEMKILELQRQAAKLKEKKE 155 (190)
T ss_pred HHHHHHHcCCccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555556666555555554444444443333333322333322 445667888999999999999999888888888
Q ss_pred hhHHHHhhhHHHHHHHHHHHHhhhhhhhhHH
Q 008522 366 TSQEQLNEMDNFIESLKESLYGAESRAESAE 396 (563)
Q Consensus 366 a~~~~isdmEn~IedLK~kvskAESRAe~AE 396 (563)
+.-.+|+.|+.-++.+++.+.++|.+-++..
T Consensus 156 ~~~~ei~~lks~~~~l~~~~~~~e~~F~~~~ 186 (190)
T PF05266_consen 156 AKDKEISRLKSEAEALKEEIENAELEFQSVA 186 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8889999999999999999999998876543
No 112
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=74.35 E-value=16 Score=42.56 Aligned_cols=113 Identities=19% Similarity=0.220 Sum_probs=83.4
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHhhhhhhhHHHHHH
Q 008522 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEE 412 (563)
Q Consensus 333 ~SE~~sL~eKv~sLEeQLkese~Ql~~akas~ea~~~~isdmEn~IedLK~kvskAESRAe~AEskc~lLteTN~EL~eE 412 (563)
-++-..++|++.-||.--....+|..-....++|..++|.|+|.+|+.-..++.-+|--.++---..+-|.---+.|=.|
T Consensus 103 ~~~~~~yQerLaRLe~dkesL~LQvsvLteqVeaQgEKIrDLE~cie~kr~kLnatEEmLQqellsrtsLETqKlDLmae 182 (861)
T KOG1899|consen 103 CPEYPEYQERLARLEMDKESLQLQVSVLTEQVEAQGEKIRDLETCIEEKRNKLNATEEMLQQELLSRTSLETQKLDLMAE 182 (861)
T ss_pred CCcchHHHHHHHHHhcchhhheehHHHHHHHHHHhhhhHHHHHHHHHHHHhhhchHHHHHHHHHHhhhhHHHHHhHHHHH
Confidence 37788899999999887777777777667778889999999999999999999999988877666666777777788889
Q ss_pred HhhhhcCCCCcchhhhhhHHHHhhHHHHHHHhH
Q 008522 413 INFLKGNNDSNTKKVGILENQLRDLEIQLQQAK 445 (563)
Q Consensus 413 L~~Lks~~ss~~ek~~~LE~qLkese~QLqhA~ 445 (563)
++.||=+-....+-.+--|+++|.++.-+||-.
T Consensus 183 vSeLKLkltalEkeq~e~E~K~R~se~l~qevn 215 (861)
T KOG1899|consen 183 VSELKLKLTALEKEQNETEKKLRLSENLMQEVN 215 (861)
T ss_pred HHHhHHHHHHHHHHhhhHHHHHHhHHHHHHHHH
Confidence 999887511111112334455566655555554
No 113
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=73.99 E-value=1.3e+02 Score=34.77 Aligned_cols=53 Identities=13% Similarity=0.284 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhchhhhHHHHh----------------hhHHHHHHHHHHHHhhhhhhh
Q 008522 341 EKVKSLEEQLKESEIRLQNANACFQTSQEQLN----------------EMDNFIESLKESLYGAESRAE 393 (563)
Q Consensus 341 eKv~sLEeQLkese~Ql~~akas~ea~~~~is----------------dmEn~IedLK~kvskAESRAe 393 (563)
.++..|+.||.....+...+.+..+.....+. .....|.+|+.+....+.+..
T Consensus 237 ~~L~~l~~ql~~a~~~~~~a~a~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~L~~~l~~l~~~~~ 305 (754)
T TIGR01005 237 QQLAELNTELSRARANRAAAEGTADSVKKALQNGGSLDVLPEVLSSQLKLEDLIQRLRERQAELRATIA 305 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhhhcCcccccHHHHHHHHHHHHHHHHHH
Confidence 55666666666666655555554443332221 122566777776666665543
No 114
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=73.77 E-value=2.5e+02 Score=35.41 Aligned_cols=237 Identities=18% Similarity=0.210 Sum_probs=122.1
Q ss_pred hHHHhhHHHhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhH----------HHHhhhhHHhhhcc
Q 008522 229 DLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISK----------EMLGRFQIVQFNLN 298 (563)
Q Consensus 229 dLEkkL~~s~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~sk----------el~gkLq~~qf~L~ 298 (563)
+++..|.++.+....+...+..+....+.+|++-.+..-.+..+--+.....+-++ .+.+++..+|+...
T Consensus 519 ~~~eele~~q~~~~~~~~~~~kv~~~rk~le~~~~d~~~e~~~~~kl~~~~~e~~~~iq~~~e~~~~~~d~l~~le~~k~ 598 (1317)
T KOG0612|consen 519 QLEEELEDAQKKNDNAADSLEKVNSLRKQLEEAELDMRAESEDAGKLRKHSKELSKQIQQELEENRDLEDKLSLLEESKS 598 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHhhHhhhhhhhhHHHHHHhhccccHHHHHHHHHHHHH
Confidence 45556666666666777777777888888887766665443333333333322222 33344444443332
Q ss_pred cchhchhHHHHHHHhHHHHHhhhhHHHHHhhhcCchhhhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHH--
Q 008522 299 GSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDN-- 376 (563)
Q Consensus 299 as~~REsel~sKL~~~~eqL~~k~~~Lekl~~s~~SE~~sL~eKv~sLEeQLkese~Ql~~akas~ea~~~~isdmEn-- 376 (563)
..+ ....++.+..+....+...+ .-++-.+.+.+.+|+..++.-..++..+..--.+.++.++++|.
T Consensus 599 ~ls----~~~~~~~~~~e~~~~~~~~~-------~e~~~~l~~~i~sL~~~~~~~~~~l~k~~el~r~~~e~~~~~ek~~ 667 (1317)
T KOG0612|consen 599 KLS----KENKKLRSELEKERRQRTEI-------SEIIAELKEEISSLEETLKAGKKELLKVEELKRENQERISDSEKEA 667 (1317)
T ss_pred HHH----HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 12222222222222222222 23444677777888877777777777777643445667777776
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHhhh--hhhhHHHHHHHhhhhcCCCCcchhhhhhHHHHhhHHHHHHHhHhhhhhhHHH
Q 008522 377 FIESLKESLYGAESRAESAEEKVTQL--TDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQ 454 (563)
Q Consensus 377 ~IedLK~kvskAESRAe~AEskc~lL--teTN~EL~eEL~~Lks~~ss~~ek~~~LE~qLkese~QLqhA~As~eAs~eq 454 (563)
+=.++-.+..-.+.+.++..++|..+ +..-.+..+=.+.|-...+ =.+-+++.+.+.+.+++--++..-.++
T Consensus 668 ~e~~~e~~lk~~q~~~eq~~~E~~~~~L~~~e~~~~e~~~~lseek~----ar~k~e~~~~~i~~e~e~L~~d~~~~~-- 741 (1317)
T KOG0612|consen 668 LEIKLERKLKMLQNELEQENAEHHRLRLQDKEAQMKEIESKLSEEKS----AREKAENLLLEIEAELEYLSNDYKQSQ-- 741 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccc----HHHHHHHHHHHHHHHHHHHhhhhhhhc--
Confidence 44455556666677777777777666 1111111111112211110 123455666666655555555544444
Q ss_pred HHhHHHHHhhHHHHHHHHHHhhhhhhhhchhhh
Q 008522 455 QSMLYSAIWDMETLIEDLKSKVSKAESKTESVE 487 (563)
Q Consensus 455 Q~ml~sti~DME~vIedLksKv~kaE~rae~~E 487 (563)
.+.|+....-..+.+.+.+.+...+.--
T Consensus 742 -----~~~~~l~r~~~~~~~~vl~Lq~~LEqe~ 769 (1317)
T KOG0612|consen 742 -----EKLNELRRSKDQLITEVLKLQSMLEQEI 769 (1317)
T ss_pred -----cchhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 2356666555555555555555544433
No 115
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=73.26 E-value=1.3e+02 Score=31.82 Aligned_cols=149 Identities=24% Similarity=0.361 Sum_probs=88.7
Q ss_pred hhhHHHHHhhhhhhhHHHHHHHhhhhcCCCCcchhhhhhHHHHhh--HHHHHHHhHhhhhhhHHHHHhHHHHHhh-HHHH
Q 008522 392 AESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRD--LEIQLQQAKVSSEASQEQQSMLYSAIWD-METL 468 (563)
Q Consensus 392 Ae~AEskc~lLteTN~EL~eEL~~Lks~~ss~~ek~~~LE~qLke--se~QLqhA~As~eAs~eqQ~ml~sti~D-ME~v 468 (563)
.+.--..+..+.+-|..|.+.|..|-.+-. -+=.-+++.++- ++.||-.|+-....-...+. .....- -+.+
T Consensus 123 ~ee~~~~~~k~~~eN~~L~eKlK~l~eQye---~rE~~~~~~~k~keLE~Ql~~AKl~q~~~~~~~e--~~k~~~~~~~~ 197 (309)
T PF09728_consen 123 MEEQSERNIKLREENEELREKLKSLIEQYE---LREEHFEKLLKQKELEVQLAEAKLEQQQEEAEQE--KEKAKQEKEIL 197 (309)
T ss_pred HHhccchhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHH
Confidence 333444555588889999999998877622 122233333333 33333333311111000000 001111 1123
Q ss_pred HHHHHHhhhhhhhhchhhhhhhcccccchhhhhhhhhhHHhHHHHHHHhHHHHHHHHHhhHHHHHHHhHHHHHH------
Q 008522 469 IEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEM------ 542 (563)
Q Consensus 469 IedLksKv~kaE~rae~~E~kc~~LsEtN~eLneELsflrsk~~~LE~sL~~A~~~K~~TakdI~~~tK~i~dL------ 542 (563)
+++.. +|..++++-..|...|+.|-.|.+..+..|...|..=..-=+|+.--+|-|+.|
T Consensus 198 l~~~~---------------~~~~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~ 262 (309)
T PF09728_consen 198 LEEAA---------------QVQTLKETEKELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQT 262 (309)
T ss_pred HHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333 588999999999999999999999999999999987666667777666666554
Q ss_pred -----------HHHHHHHHHHHHHHHHHh
Q 008522 543 -----------VMQLATQRELIQKQVLIL 560 (563)
Q Consensus 543 -----------v~qLa~ERErL~~Qissl 560 (563)
+..++.||..+..++-.+
T Consensus 263 ~k~k~e~~n~~l~~m~eer~~~~~~~~~~ 291 (309)
T PF09728_consen 263 WKSKWEKSNKALIEMAEERQKLEKELEKL 291 (309)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 445677777665555443
No 116
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=72.93 E-value=91 Score=36.67 Aligned_cols=101 Identities=19% Similarity=0.243 Sum_probs=64.4
Q ss_pred hHHHHHhhHHHHHHHHHHhhhhhhhhchhhhhhhcccccchhhhhhhhhhHHhHHHHHHHhHHHHHHHHHhhHHHHH---
Q 008522 457 MLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVN--- 533 (563)
Q Consensus 457 ml~sti~DME~vIedLksKv~kaE~rae~~E~kc~~LsEtN~eLneELsflrsk~~~LE~sL~~A~~~K~~TakdI~--- 533 (563)
.|...+.+....=+.|..++...-. .+..+--.||+...+..+||.-++.++..|.+++.++......-...+.
T Consensus 597 ~LaeR~e~a~d~Qe~L~~R~~~vl~---~l~~~~P~LS~AEr~~~~EL~~~~~~l~~l~~si~~lk~k~~~Q~~~i~~~~ 673 (717)
T PF10168_consen 597 KLAERYEEAKDKQEKLMKRVDRVLQ---LLNSQLPVLSEAEREFKKELERMKDQLQDLKASIEQLKKKLDYQQRQIESQK 673 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3444444444333334333333222 2233445688888899999999999999999999887654433222221
Q ss_pred -----------HHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 008522 534 -----------HRTKLMMEMVMQLATQRELIQKQVLIL 560 (563)
Q Consensus 534 -----------~~tK~i~dLv~qLa~ERErL~~Qissl 560 (563)
.+.+.|.+...|.+.+-.++-+||-.+
T Consensus 674 ~~~~~s~~L~~~Q~~~I~~iL~~~~~~I~~~v~~ik~i 711 (717)
T PF10168_consen 674 SPKKKSIVLSESQKRTIKEILKQQGEEIDELVKQIKNI 711 (717)
T ss_pred cccCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 235689999999999988888887654
No 117
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=71.23 E-value=27 Score=38.38 Aligned_cols=53 Identities=34% Similarity=0.411 Sum_probs=43.8
Q ss_pred hhhhhhHHHHhhHHHHHHHh--------HhhhhhhHHHHHhHHHHHhhHHHHHHHHHHhhhhhh
Q 008522 425 KKVGILENQLRDLEIQLQQA--------KVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAE 480 (563)
Q Consensus 425 ek~~~LE~qLkese~QLqhA--------~As~eAs~eqQ~ml~sti~DME~vIedLksKv~kaE 480 (563)
.|...||.|+.++ +||+++ -|+.+....=|+ |...+|+.-+||-.+++++|.|
T Consensus 258 ~R~erLEeqlNd~-~elHq~Ei~~LKqeLa~~EEK~~Yqs--~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 258 YRYERLEEQLNDL-TELHQNEIYNLKQELASMEEKMAYQS--YERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhHHHHHHHHH--HHHHhHHHHHHHHHHHHHHHHH
Confidence 3577788888776 555444 488888888888 9999999999999999999999
No 118
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=70.93 E-value=2.1 Score=48.83 Aligned_cols=50 Identities=18% Similarity=0.256 Sum_probs=0.0
Q ss_pred HHHHhhHHHHHHHHHHhhhhhhhhchhhhhhhcccccchhhhhhhhhhHH
Q 008522 459 YSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMR 508 (563)
Q Consensus 459 ~sti~DME~vIedLksKv~kaE~rae~~E~kc~~LsEtN~eLneELsflr 508 (563)
.+.+.-...-|.+|+.|......+++.++-.+.-|.+.+..|..|-..+.
T Consensus 362 ~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~l~~eke~l~ 411 (713)
T PF05622_consen 362 KSQLEEYKKQIQELEQKLSEESRRADKLEFENKQLEEKLEALEEEKERLQ 411 (713)
T ss_dssp --------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555778888888888888888888888888887766555444443
No 119
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=70.43 E-value=20 Score=34.74 Aligned_cols=114 Identities=23% Similarity=0.290 Sum_probs=43.4
Q ss_pred HHhhhhHHhhhcccchhchhHHHHHHHhHHHHHhhhhHHHHHhhhcCchhhhhHHHHHHHHHHHHHHHHHHHhhhhhchh
Q 008522 286 MLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQ 365 (563)
Q Consensus 286 l~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~Lekl~~s~~SE~~sL~eKv~sLEeQLkese~Ql~~akas~e 365 (563)
+-.++-..+-+|..+-++=+++..+|.....++.. +..++......|+.....+........
T Consensus 72 le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~------------------l~~~~~~~~~~l~~l~~~~~~L~~~~~ 133 (194)
T PF08614_consen 72 LEQKLAKLQEELAELYRSKGELAQQLVELNDELQE------------------LEKELSEKERRLAELEAELAQLEEKIK 133 (194)
T ss_dssp ------------------------------------------------------------HHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccch------------------hhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566666666556655555544444433 333333333333333333333333333
Q ss_pred hhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHhhhhhhhHHHHHHHhhhh
Q 008522 366 TSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLK 417 (563)
Q Consensus 366 a~~~~isdmEn~IedLK~kvskAESRAe~AEskc~lLteTN~EL~eEL~~Lk 417 (563)
.....+..+...|+.|++.+.--.-....+|.++.-|..-|.+|-+-+=..+
T Consensus 134 ~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~k 185 (194)
T PF08614_consen 134 DLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQRK 185 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666777777777777777777888888888888888766544433
No 120
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=70.23 E-value=51 Score=30.48 Aligned_cols=90 Identities=14% Similarity=0.171 Sum_probs=56.3
Q ss_pred hHHHHHhhHHHHHHHHHHhhhhhhhhchhhhhhhcccccchhhhhhhhhhHHhHHHHHHHhHHHHHHHHHhhHHHHHHHh
Q 008522 457 MLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRT 536 (563)
Q Consensus 457 ml~sti~DME~vIedLksKv~kaE~rae~~E~kc~~LsEtN~eLneELsflrsk~~~LE~sL~~A~~~K~~TakdI~~~t 536 (563)
-+..++..+..-|+-|+..+..++.+ +.++-.+++....+...++..+..+...=.....|+..-+
T Consensus 56 ~l~~~~~~l~~d~~~l~~~~~rL~~~--------------~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk 121 (151)
T PF11559_consen 56 DLSDKLRRLRSDIERLQNDVERLKEQ--------------LEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLK 121 (151)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555544433 4455556666666666666666666555555556666667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 008522 537 KLMMEMVMQLATQRELIQKQVLIL 560 (563)
Q Consensus 537 K~i~dLv~qLa~ERErL~~Qissl 560 (563)
..+...-+|.+.|.-|-..+|..|
T Consensus 122 ~~~~~~~tq~~~e~rkke~E~~kL 145 (151)
T PF11559_consen 122 NQLQQRKTQYEHELRKKEREIEKL 145 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888888888877777766654
No 121
>PRK10884 SH3 domain-containing protein; Provisional
Probab=70.22 E-value=28 Score=34.82 Aligned_cols=78 Identities=21% Similarity=0.324 Sum_probs=47.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHhhhhhhhHHHHHHHh
Q 008522 335 EVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEIN 414 (563)
Q Consensus 335 E~~sL~eKv~sLEeQLkese~Ql~~akas~ea~~~~isdmEn~IedLK~kvskAESRAe~AEskc~lLteTN~EL~eEL~ 414 (563)
.-.++.+.+..||.|+.+...++.++..+.. +..++|...+...+.. ...|.+.|.+|+++|.
T Consensus 87 ~~p~~~~rlp~le~el~~l~~~l~~~~~~~~---~~~~~l~~~~~~~~~~--------------~~~L~~~n~~L~~~l~ 149 (206)
T PRK10884 87 TTPSLRTRVPDLENQVKTLTDKLNNIDNTWN---QRTAEMQQKVAQSDSV--------------INGLKEENQKLKNQLI 149 (206)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHH
Confidence 3457788889999999999988888775532 2333333333332222 2226777777777777
Q ss_pred hhhcCCCCcchhhhhhHHHHhh
Q 008522 415 FLKGNNDSNTKKVGILENQLRD 436 (563)
Q Consensus 415 ~Lks~~ss~~ek~~~LE~qLke 436 (563)
.++.. +..|+.++..
T Consensus 150 ~~~~~-------~~~l~~~~~~ 164 (206)
T PRK10884 150 VAQKK-------VDAANLQLDD 164 (206)
T ss_pred HHHHH-------HHHHHHHHHH
Confidence 76663 5555555443
No 122
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=70.07 E-value=84 Score=33.36 Aligned_cols=133 Identities=20% Similarity=0.246 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhcccchhchh---HHHHHHHhHHHHHhhhhHHHHH--
Q 008522 253 QVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRES---ELKSKLGDFIEQLKAKDMVLQK-- 327 (563)
Q Consensus 253 qe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REs---el~sKL~~~~eqL~~k~~~Lek-- 327 (563)
-.+.+--=.|...|==|= ...+.|+-..+...+..++.|..-....+. ++..+|..-...|...-..|..
T Consensus 121 lvK~~aRl~ak~~WYeWR-----~kllegLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~ 195 (312)
T smart00787 121 LVKTFARLEAKKMWYEWR-----MKLLEGLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLE 195 (312)
T ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 344444445666665553 234666666666666666666544443333 2222222222222222222222
Q ss_pred --hhhcCchhhhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHH
Q 008522 328 --LESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEE 397 (563)
Q Consensus 328 --l~~s~~SE~~sL~eKv~sLEeQLkese~Ql~~akas~ea~~~~isdmEn~IedLK~kvskAESRAe~AEs 397 (563)
+..+...|...+++++..+..+ +...+...+..+.++.+....|++.+.+...-.+....|+.
T Consensus 196 ~e~~~~d~~eL~~lk~~l~~~~~e-------i~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~ 260 (312)
T smart00787 196 DELEDCDPTELDRAKEKLKKLLQE-------IMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEK 260 (312)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222344555555554444333 33344444445555556666666666665555555555554
No 123
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=69.68 E-value=2.1e+02 Score=32.74 Aligned_cols=18 Identities=17% Similarity=0.444 Sum_probs=8.3
Q ss_pred HHhhHHHHHHHHHHhhhh
Q 008522 461 AIWDMETLIEDLKSKVSK 478 (563)
Q Consensus 461 ti~DME~vIedLksKv~k 478 (563)
.+..++.=|.++..|+..
T Consensus 399 ~~~~~e~el~~l~~~l~~ 416 (650)
T TIGR03185 399 ELRELEEELAEVDKKIST 416 (650)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 344444444444444443
No 124
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=68.86 E-value=30 Score=30.47 Aligned_cols=75 Identities=23% Similarity=0.288 Sum_probs=59.4
Q ss_pred hHHHhhHHHhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhcccchhchhHHH
Q 008522 229 DLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELK 308 (563)
Q Consensus 229 dLEkkL~~s~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~ 308 (563)
.+++...+.+...-.+...++..++.+..|+-.-...-.++|+|....+.|....+-+- ....+-+++.
T Consensus 7 ~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~-----------~~~~Ks~~~i 75 (96)
T PF08647_consen 7 SMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLN-----------TQLSKSSELI 75 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-----------HHHHHhHHHH
Confidence 46777888888888899999999999999999999999999999999999988876543 3334445555
Q ss_pred HHHHhH
Q 008522 309 SKLGDF 314 (563)
Q Consensus 309 sKL~~~ 314 (563)
++|++.
T Consensus 76 ~~L~~~ 81 (96)
T PF08647_consen 76 EQLKET 81 (96)
T ss_pred HHHHHH
Confidence 555543
No 125
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=67.95 E-value=2.7e+02 Score=33.38 Aligned_cols=47 Identities=28% Similarity=0.394 Sum_probs=21.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHH
Q 008522 335 EVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESL 381 (563)
Q Consensus 335 E~~sL~eKv~sLEeQLkese~Ql~~akas~ea~~~~isdmEn~IedL 381 (563)
...++..+++.+|..|.+...++..++.+..+...++..|...+++|
T Consensus 618 ~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~l 664 (769)
T PF05911_consen 618 QLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESL 664 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444444444433
No 126
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=67.81 E-value=1.1e+02 Score=28.94 Aligned_cols=73 Identities=22% Similarity=0.398 Sum_probs=29.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHhhhhhhhHHHHHHHh
Q 008522 335 EVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEIN 414 (563)
Q Consensus 335 E~~sL~eKv~sLEeQLkese~Ql~~akas~ea~~~~isdmEn~IedLK~kvskAESRAe~AEskc~lLteTN~EL~eEL~ 414 (563)
+...+.+-...+.+.++.....+............++.++. .++.+.+.+++.-...+..+.++-..+.+.+.
T Consensus 110 ~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~-------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 182 (191)
T PF04156_consen 110 ELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ-------KELQDSREEVQELRSQLERLQENLQQLEEKIQ 182 (191)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334344444444444444444444444333333333333 33333334444444444444444444444333
No 127
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=67.52 E-value=1.5e+02 Score=30.11 Aligned_cols=163 Identities=14% Similarity=0.204 Sum_probs=102.7
Q ss_pred HhhhHHHHHHHHHHHHhhhhhhhhHHHHHhhhhhhhHHHHHHHhhhhcCCCCcchhhhhhHHHHhhHHHHHHHhH----h
Q 008522 371 LNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAK----V 446 (563)
Q Consensus 371 isdmEn~IedLK~kvskAESRAe~AEskc~lLteTN~EL~eEL~~Lks~~ss~~ek~~~LE~qLkese~QLqhA~----A 446 (563)
..||+.++.-++..+..+|.+....-.+|.-|..+|.++..=+..+... +-..-...++.+ +
T Consensus 4 ~~d~d~~~~~~~~e~~~~E~e~~~l~~k~~e~~~~~~~m~~i~~e~Ek~--------------i~~~i~e~~~~~~~~~~ 69 (207)
T PF05010_consen 4 QKDLDAAIKKVQEEVAEKEEEEQELKKKYEELHKENQEMRKIMEEYEKT--------------IAQMIEEKQKQKELSEA 69 (207)
T ss_pred HHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH--------------HHHHHHHHHhhHHhHHH
Confidence 3589999999999999999999999999999999999887755544442 222211122222 2
Q ss_pred hhhhhHHHHHhHHHHHhhHHHHHHHHHHhhhhhhhhchhhhhhhcccccchhhhhhhhhhHHhHHHHHHHhHHHHHHHHH
Q 008522 447 SSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKA 526 (563)
Q Consensus 447 s~eAs~eqQ~ml~sti~DME~vIedLksKv~kaE~rae~~E~kc~~LsEtN~eLneELsflrsk~~~LE~sL~~A~~~K~ 526 (563)
.+......-.-++.-+.-||+-+-||-.++-+...-.+.+-. -=-.|...+.-|..|+...+... ...|.
T Consensus 70 ~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~-------NEE~Lkk~~~ey~~~l~~~eqry---~aLK~ 139 (207)
T PF05010_consen 70 EIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKK-------NEETLKKCIEEYEERLKKEEQRY---QALKA 139 (207)
T ss_pred HHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Confidence 222221112225777888888889999888887766333332 11223355555667776555332 33445
Q ss_pred hhHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 008522 527 ASAKEVNHRTKLMMEMVMQLATQRELIQKQV 557 (563)
Q Consensus 527 ~TakdI~~~tK~i~dLv~qLa~ERErL~~Qi 557 (563)
-+...|..-+.-|..+..++..|--.|+-+|
T Consensus 140 hAeekL~~ANeei~~v~~~~~~e~~aLqa~l 170 (207)
T PF05010_consen 140 HAEEKLEKANEEIAQVRSKHQAELLALQASL 170 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 5555666666677777777777766666544
No 128
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=67.22 E-value=2.2e+02 Score=32.04 Aligned_cols=42 Identities=12% Similarity=0.181 Sum_probs=21.4
Q ss_pred hHHHHHHHhHHHHHHHHHhhHHHHHHH-hHHHHHHHHHHHHHH
Q 008522 509 DKIKILESSLNRANIEKAASAKEVNHR-TKLMMEMVMQLATQR 550 (563)
Q Consensus 509 sk~~~LE~sL~~A~~~K~~TakdI~~~-tK~i~dLv~qLa~ER 550 (563)
..++.|+..+..+...=...|..|... .++...|-.....+-
T Consensus 346 ~~le~L~~el~~l~~~l~~~a~~Ls~~R~~~a~~l~~~v~~~l 388 (563)
T TIGR00634 346 ESLEALEEEVDKLEEELDKAAVALSLIRRKAAERLAKRVEQEL 388 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555545555555544 555555544444443
No 129
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.13 E-value=97 Score=35.90 Aligned_cols=133 Identities=21% Similarity=0.262 Sum_probs=0.0
Q ss_pred chhchhHHHHHHHhHHHHHhhhhHHHHHhhhcCchhhhhHHHHHHHH-------HHHHHHHHHHHhhhhhchhhhHHHHh
Q 008522 300 SLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSL-------EEQLKESEIRLQNANACFQTSQEQLN 372 (563)
Q Consensus 300 s~~REsel~sKL~~~~eqL~~k~~~Lekl~~s~~SE~~sL~eKv~sL-------EeQLkese~Ql~~akas~ea~~~~is 372 (563)
+.+|+-+=++++ +++++- .-|.+-|-+||..| |.++.+|.....+.+++-.--.++++
T Consensus 319 keqr~rderE~~--------------EeIe~~-~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk 383 (654)
T KOG4809|consen 319 KEQRERDERERL--------------EEIESF-RKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLK 383 (654)
T ss_pred cchhhhhHHHHH--------------HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhHHHHHhhhhhhhHHHHHHHhhhhcCCCCcchhhhhhHHHHhhHHHHHHHhHhhhhhhH
Q 008522 373 EMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQ 452 (563)
Q Consensus 373 dmEn~IedLK~kvskAESRAe~AEskc~lLteTN~EL~eEL~~Lks~~ss~~ek~~~LE~qLkese~QLqhA~As~eAs~ 452 (563)
+++-.+|.=|+++++ +|.+|+....-+..|.++-+..-
T Consensus 384 ~leIalEqkkEec~k------------------------------------------me~qLkkAh~~~ddar~~pe~~d 421 (654)
T KOG4809|consen 384 SLEIALEQKKEECSK------------------------------------------MEAQLKKAHNIEDDARMNPEFAD 421 (654)
T ss_pred HHHHHHHHHHHHHHH------------------------------------------HHHHHHHHHHhhHhhhcChhhHH
Q ss_pred HHHHhHHHHHhhHHHHHHHHHHhhhhhhhhchhhhhhhcccccchhhhhhhhhhHH
Q 008522 453 EQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMR 508 (563)
Q Consensus 453 eqQ~ml~sti~DME~vIedLksKv~kaE~rae~~E~kc~~LsEtN~eLneELsflr 508 (563)
. |+|+|.-+...+.-++||... -+.|+++..|...+.
T Consensus 422 ~--------i~~le~e~~~y~de~~kaqae-----------vdrlLeilkeveneK 458 (654)
T KOG4809|consen 422 Q--------IKQLEKEASYYRDECGKAQAE-----------VDRLLEILKEVENEK 458 (654)
T ss_pred H--------HHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHhhh
No 130
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=67.09 E-value=1.9e+02 Score=31.37 Aligned_cols=22 Identities=18% Similarity=0.161 Sum_probs=13.0
Q ss_pred chhhhhhHHHHhhHHHHHHHhH
Q 008522 424 TKKVGILENQLRDLEIQLQQAK 445 (563)
Q Consensus 424 ~ek~~~LE~qLkese~QLqhA~ 445 (563)
.-++-.+.+++.....++....
T Consensus 274 hP~v~~l~~qi~~l~~~l~~~~ 295 (498)
T TIGR03007 274 HPDVIATKREIAQLEEQKEEEG 295 (498)
T ss_pred ChHHHHHHHHHHHHHHHHHhhc
Confidence 3456666666666666655543
No 131
>PRK10884 SH3 domain-containing protein; Provisional
Probab=66.79 E-value=43 Score=33.58 Aligned_cols=34 Identities=18% Similarity=0.250 Sum_probs=18.9
Q ss_pred HHhhhHHHHHHHHHHHHhhhhhhhhHHHHHhhhh
Q 008522 370 QLNEMDNFIESLKESLYGAESRAESAEEKVTQLT 403 (563)
Q Consensus 370 ~isdmEn~IedLK~kvskAESRAe~AEskc~lLt 403 (563)
.++++++-+..|+.++..+.++.+.++++..-+-
T Consensus 133 ~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~ 166 (206)
T PRK10884 133 VINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQ 166 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666666666665555555544433
No 132
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=66.69 E-value=1.5e+02 Score=30.08 Aligned_cols=152 Identities=23% Similarity=0.320 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHhhhhhhhHHHHHHHhhhhcCCC
Q 008522 342 KVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNND 421 (563)
Q Consensus 342 Kv~sLEeQLkese~Ql~~akas~ea~~~~isdmEn~IedLK~kvskAESRAe~AEskc~lLteTN~EL~eEL~~Lks~~s 421 (563)
-+..|--|||++..-+.. =.+-|-.||..+-.+-+...+.+..+.-|.++.. +
T Consensus 11 EIsLLKqQLke~q~E~~~--------------K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~----------~--- 63 (202)
T PF06818_consen 11 EISLLKQQLKESQAEVNQ--------------KDSEIVSLRAQLRELRAELRNKESQIQELQDSLR----------T--- 63 (202)
T ss_pred hHHHHHHHHHHHHHHHHH--------------HHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH----------H---
Confidence 367788888887664432 3334777777766666655555555544433221 1
Q ss_pred CcchhhhhhHHHHhhHHHHHHHhHhhhhhhHHHHHhHHHHHhhHHHHHHHHHHhhhhhhhhchhhhhhhcccccchhhhh
Q 008522 422 SNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELK 501 (563)
Q Consensus 422 s~~ek~~~LE~qLkese~QLqhA~As~eAs~eqQ~ml~sti~DME~vIedLksKv~kaE~rae~~E~kc~~LsEtN~eLn 501 (563)
|---|| ..+ ..|+..+.-+ ..|..++-.++.-|-+|+.-+..+ -.....|.+|+++
T Consensus 64 ----K~~ELE--~ce--~ELqr~~~Ea-------~lLrekl~~le~El~~Lr~~l~~~----~~~~~~~~~l~~~----- 119 (202)
T PF06818_consen 64 ----KQLELE--VCE--NELQRKKNEA-------ELLREKLGQLEAELAELREELACA----GRLKRQCQLLSES----- 119 (202)
T ss_pred ----hhHhHH--HhH--HHHHHHhCHH-------HHhhhhhhhhHHHHHHHHHHHHhh----ccchhhhcccccc-----
Confidence 111111 111 1222222111 234556677777777777776654 1122345555411
Q ss_pred hhhhhHHhHHHHHHHhHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008522 502 NKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVLILL 561 (563)
Q Consensus 502 eELsflrsk~~~LE~sL~~A~~~K~~TakdI~~~tK~i~dLv~qLa~ERErL~~Qissl~ 561 (563)
+.|.......+..++....-++-|-..|+.||.+...|..++-
T Consensus 120 -----------------deak~~~~~~~~~~~~l~~e~erL~aeL~~er~~~e~q~~~Fe 162 (202)
T PF06818_consen 120 -----------------DEAKAQRQAGEDELGSLRREVERLRAELQRERQRREEQRSSFE 162 (202)
T ss_pred -----------------chhHHhhccccccchhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 1111112224456676777888899999999999988887763
No 133
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=66.57 E-value=83 Score=29.13 Aligned_cols=67 Identities=24% Similarity=0.315 Sum_probs=35.8
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHH
Q 008522 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKV 399 (563)
Q Consensus 333 ~SE~~sL~eKv~sLEeQLkese~Ql~~akas~ea~~~~isdmEn~IedLK~kvskAESRAe~AEskc 399 (563)
.++...|...+..|+.++.+++-.+..+.+..-+...++.+....+...|+.+.+..+..++...+|
T Consensus 65 ~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~ 131 (151)
T PF11559_consen 65 RSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQY 131 (151)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555666666555555555544444444444555555555555555555555555544444
No 134
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=66.21 E-value=1.3e+02 Score=29.23 Aligned_cols=162 Identities=23% Similarity=0.262 Sum_probs=77.9
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHhhhhhhhHHHHHH
Q 008522 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEE 412 (563)
Q Consensus 333 ~SE~~sL~eKv~sLEeQLkese~Ql~~akas~ea~~~~isdmEn~IedLK~kvskAESRAe~AEskc~lLteTN~EL~eE 412 (563)
||+ ..|.-.+..+++++......+..+.+... .++.-+.++...+.+=+.+|..|-.+- |-.|=.+
T Consensus 23 DP~-~~l~q~ird~e~~l~~a~~~~a~~~a~~~-------~le~~~~~~~~~~~~~~~~A~~Al~~g------~edLAr~ 88 (221)
T PF04012_consen 23 DPE-KMLEQAIRDMEEQLRKARQALARVMANQK-------RLERKLDEAEEEAEKWEKQAELALAAG------REDLARE 88 (221)
T ss_pred CHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHcC------CHHHHHH
Confidence 566 45555555556655555555555555433 344444444444444455554443321 2222111
Q ss_pred HhhhhcCCCCcchhhhhhHHHHhhHHHHHHHhHhhhhhhHHHHHhHHHHHhhHHHHHHHHHHhhhhhhhhchhhhhhhc-
Q 008522 413 INFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCI- 491 (563)
Q Consensus 413 L~~Lks~~ss~~ek~~~LE~qLkese~QLqhA~As~eAs~eqQ~ml~sti~DME~vIedLksKv~kaE~rae~~E~kc~- 491 (563)
. | .+...++.++..+..+++.+...++ .|+..|..|+.-|.++++|..-.-.|...+.-+--
T Consensus 89 a--l--------~~k~~~e~~~~~l~~~~~~~~~~~~-------~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~~~~ 151 (221)
T PF04012_consen 89 A--L--------QRKADLEEQAERLEQQLDQAEAQVE-------KLKEQLEELEAKLEELKSKREELKARENAAKAQKKV 151 (221)
T ss_pred H--H--------HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0 1233444444444444444333322 45667777777777777776655555433332211
Q ss_pred --ccccc-hhhhhhhhhhHHhHHHHHHHhHHHHHHHH
Q 008522 492 --VLSED-NFELKNKQSFMRDKIKILESSLNRANIEK 525 (563)
Q Consensus 492 --~LsEt-N~eLneELsflrsk~~~LE~sL~~A~~~K 525 (563)
.++.. .......+.-++.|+..+|..-......-
T Consensus 152 ~~~~~~~~~~~a~~~~er~e~ki~~~ea~a~a~~el~ 188 (221)
T PF04012_consen 152 NEALASFSVSSAMDSFERMEEKIEEMEARAEASAELA 188 (221)
T ss_pred HHHhccCCccchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 11111 23334455566666666665555444433
No 135
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=65.61 E-value=1.9e+02 Score=30.78 Aligned_cols=21 Identities=19% Similarity=0.346 Sum_probs=15.7
Q ss_pred CchhhhhHHHHHHHHHHHHHH
Q 008522 332 KNSEVLTMKEKVKSLEEQLKE 352 (563)
Q Consensus 332 ~~SE~~sL~eKv~sLEeQLke 352 (563)
..|.+..+..++..|+++++.
T Consensus 280 ~hP~v~~l~~~i~~l~~~l~~ 300 (444)
T TIGR03017 280 NHPQYKRAQAEINSLKSQLNA 300 (444)
T ss_pred CCcHHHHHHHHHHHHHHHHHH
Confidence 467788888887777777764
No 136
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=65.44 E-value=2e+02 Score=30.95 Aligned_cols=56 Identities=9% Similarity=0.077 Sum_probs=39.7
Q ss_pred hcccccchhhhhhhhhhHHhHHHHHHHhHHHHHHHHHhhHHHHHHHhHHHHHHHHH
Q 008522 490 CIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQ 545 (563)
Q Consensus 490 c~~LsEtN~eLneELsflrsk~~~LE~sL~~A~~~K~~TakdI~~~tK~i~dLv~q 545 (563)
...=++.|..-.+|++.|.+++-+|+.++.+--.++..-...+...+..=..|.+.
T Consensus 222 La~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aE 277 (306)
T PF04849_consen 222 LARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAE 277 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 44446788888999999999999999999888777766665555554433333333
No 137
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=65.32 E-value=3.7e+02 Score=33.95 Aligned_cols=135 Identities=12% Similarity=0.100 Sum_probs=82.5
Q ss_pred HHHHhhhhHHhhhcccchhchhHHHHHHHhHHHHHhhhhHHHHHhhhc-----CchhhhhHHHHHHHHHHHHHHHHHH--
Q 008522 284 KEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLEST-----KNSEVLTMKEKVKSLEEQLKESEIR-- 356 (563)
Q Consensus 284 kel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~Lekl~~s-----~~SE~~sL~eKv~sLEeQLkese~Q-- 356 (563)
......+......+.+...+=.....++..+...+.+....+...... ....+..+.+-+..+..++......
T Consensus 789 ~~A~~~l~~A~~~~~~a~~~l~~a~~~l~~a~~~~~~a~~~l~~aaa~l~L~a~~~~l~~~~~aL~~y~~~l~~l~~~~~ 868 (1353)
T TIGR02680 789 RAAHRRAAEAERQAESAERELARAARKAAAAAAAWKQARRELERDAADLDLPTDPDALEAVGLALKRFGDHLHTLEVAVR 868 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555666666666666666655555544443 2455666677776666666555443
Q ss_pred -HhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHhhhhhhh----HHHHHHHhhhhc
Q 008522 357 -LQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTN----LELSEEINFLKG 418 (563)
Q Consensus 357 -l~~akas~ea~~~~isdmEn~IedLK~kvskAESRAe~AEskc~lLteTN----~EL~eEL~~Lks 418 (563)
+.+|..........+.+.+.-+.+....+..++..+..+..++..|.++= .++..+|..++.
T Consensus 869 ~L~~A~~~~~~a~~~le~ae~~l~~~~~e~~~~~~e~~~a~~~l~~l~e~l~~~~eel~a~L~e~r~ 935 (1353)
T TIGR02680 869 ELRHAATRAAEQRARAARAESDAREAAEDAAEARAEAEEASLRLRTLEESVGAMVDEIRARLAETRA 935 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455554555667777777788888888888888888877777776663 344444444443
No 138
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=64.75 E-value=1.9e+02 Score=30.41 Aligned_cols=151 Identities=18% Similarity=0.170 Sum_probs=0.0
Q ss_pred hhHHHHHhhhhhhhHHHHHHHhhhhcCCCCcchhhhhhHHHHhhHHHHHHHhHhhhhhhHHHHHhHHHHHhhHHHHHHHH
Q 008522 393 ESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDL 472 (563)
Q Consensus 393 e~AEskc~lLteTN~EL~eEL~~Lks~~ss~~ek~~~LE~qLkese~QLqhA~As~eAs~eqQ~ml~sti~DME~vIedL 472 (563)
+.....|..|+.+|.+|-.++...-.+ +-.||..| .|=++--+.+-+.-+ |+-=+.|+....||
T Consensus 9 ~el~~h~~~L~~~N~~L~~~IqdtE~s---t~~~Vr~l--------Lqqy~~~~~~i~~le-----~~~~~~l~~ak~eL 72 (258)
T PF15397_consen 9 QELKKHEDFLTKLNKELIKEIQDTEDS---TALKVRKL--------LQQYDIYRTAIDILE-----YSNHKQLQQAKAEL 72 (258)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHhHHhh---HHHHHHHH--------HHHHHHHHHHHHHHH-----ccChHHHHHHHHHH
Q ss_pred HHhhhhhhhhchhhhhhhcccccchhhhhhhhhhHHh--------HHHHHHHhHHHHHHHHHhhHHHHHHHhHHHHHHHH
Q 008522 473 KSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRD--------KIKILESSLNRANIEKAASAKEVNHRTKLMMEMVM 544 (563)
Q Consensus 473 ksKv~kaE~rae~~E~kc~~LsEtN~eLneELsflrs--------k~~~LE~sL~~A~~~K~~TakdI~~~tK~i~dLv~ 544 (563)
++--.+++++.-.++.+---|.-.--+.++||+||.. |.-..-+-.++....|..-..+++--...+.-...
T Consensus 73 qe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~vqIa~L~rqlq~lk~~qqdEldel~e~~~~el~ 152 (258)
T PF15397_consen 73 QEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQIANLVRQLQQLKDSQQDELDELNEMRQMELA 152 (258)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHH
Q 008522 545 QLATQRELIQKQVLI 559 (563)
Q Consensus 545 qLa~ERErL~~Qiss 559 (563)
.+....+.-..+|-+
T Consensus 153 ~l~~~~q~k~~~il~ 167 (258)
T PF15397_consen 153 SLSRKIQEKKEEILS 167 (258)
T ss_pred HHHHHHHHHHHHHHH
No 139
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=64.68 E-value=3e+02 Score=32.77 Aligned_cols=73 Identities=10% Similarity=0.221 Sum_probs=42.3
Q ss_pred ccccchhhhhhH--HHHHHHHHhhcCCccccccCCCccchHHHHHHHHHHH---hhhhhhhhHHhHHHHHHHHHhhhh
Q 008522 52 DLAYSSEKLVNL--HVLLMYLLARGDDLETLVMENSDVAATSIEKALVYDL---LFGILDSELREVERLLDTIHVEIV 124 (563)
Q Consensus 52 dla~~SEKl~NL--~~l~M~l~~~~~d~E~~~~~~~~i~~~s~eka~efDl---L~gildSEv~Ele~~~~~lq~~I~ 124 (563)
|+...=+.++.| .+|..-|.-+-..|-.+...+..-=..-+.+.|..|. ++-.+-.-++++..-...++..+.
T Consensus 118 ~v~~~i~~llgld~~~f~~~v~l~QGe~~~fl~~~~~er~~il~~l~~l~~~e~~~~~l~e~~~~~~~~~e~l~~~~~ 195 (908)
T COG0419 118 DVNEKIEELLGLDKDTFTRSVYLPQGEFDAFLKSKPKERKEILDELFGLEKYEKLSELLKEVIKEAKAKIEELEGQLS 195 (908)
T ss_pred hHHHHHHHHhCCCHHHHhHHheeccHhHHHHHhcCcHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555566554 6888888888888887766554433344556665555 333333444455555555555554
No 140
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=64.55 E-value=94 Score=28.96 Aligned_cols=85 Identities=20% Similarity=0.299 Sum_probs=60.2
Q ss_pred hHHHHHhhHHHHHHHHHHhhhhhhhhchhhhhhhcccccchhh---hhhhhhhHHhHHHHHHHhHHHHHH---HHHhhHH
Q 008522 457 MLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFE---LKNKQSFMRDKIKILESSLNRANI---EKAASAK 530 (563)
Q Consensus 457 ml~sti~DME~vIedLksKv~kaE~rae~~E~kc~~LsEtN~e---LneELsflrsk~~~LE~sL~~A~~---~K~~Tak 530 (563)
.|-++|+..|.=|--|+..+...+..-+.+....+-|+..|-+ ...++.-|+..+.+|+.....+.+ +|.+-+.
T Consensus 20 ~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~ve 99 (120)
T PF12325_consen 20 RLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKSEEVE 99 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 4667888888888888888888888888888888888888844 456677777777777777666554 4555555
Q ss_pred HHHHHhHHHHH
Q 008522 531 EVNHRTKLMME 541 (563)
Q Consensus 531 dI~~~tK~i~d 541 (563)
++-..-.=+++
T Consensus 100 EL~~Dv~DlK~ 110 (120)
T PF12325_consen 100 ELRADVQDLKE 110 (120)
T ss_pred HHHHHHHHHHH
Confidence 55444333333
No 141
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=64.15 E-value=3.1e+02 Score=32.74 Aligned_cols=191 Identities=19% Similarity=0.217 Sum_probs=96.2
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHH-------hhhhhchhhhHHHHh-------hhHHHHHHHHHHHHhh---hhhhhhH
Q 008522 333 NSEVLTMKEKVKSLEEQLKESEIRL-------QNANACFQTSQEQLN-------EMDNFIESLKESLYGA---ESRAESA 395 (563)
Q Consensus 333 ~SE~~sL~eKv~sLEeQLkese~Ql-------~~akas~ea~~~~is-------dmEn~IedLK~kvskA---ESRAe~A 395 (563)
--++.+|..|+..||+.|.+.+.+. .-+....+....+++ +--++++.|+.-|-.. +.+.+.-
T Consensus 161 q~~l~sL~~k~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk~~~~le~q~tlv~~LR~YvGeq~p~~~~~~~w 240 (739)
T PF07111_consen 161 QEALASLTSKAEELEKSLESLETRRAGEAKELAEAQREADLLREQLSKTQEELEAQVTLVEQLRKYVGEQVPPEVHSQAW 240 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhCCcccccHHH
Confidence 4677899999999999999998863 223333333333333 3334577777777443 3444445
Q ss_pred HHHHhhhhhhhHHHHHHHhhhhcCCCCcchhhhhhHHHHhhHHHHHHHhHh------hhhhhHHHHHhHHH---------
Q 008522 396 EEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKV------SSEASQEQQSMLYS--------- 460 (563)
Q Consensus 396 Eskc~lLteTN~EL~eEL~~Lks~~ss~~ek~~~LE~qLkese~QLqhA~A------s~eAs~eqQ~ml~s--------- 460 (563)
+.+-..|-+|=..|.++=+.|.....-..=+|++|.-=|.-=+.-|-+-+- +-.+.+- |++|..
T Consensus 241 e~Er~~L~~tVq~L~edR~~L~~T~ELLqVRvqSLt~IL~LQEeEL~~Kvqp~d~Le~e~~~K~-q~LL~~WREKVFaLm 319 (739)
T PF07111_consen 241 EPEREELLETVQHLQEDRDALQATAELLQVRVQSLTDILTLQEEELCRKVQPSDPLEPEFSRKC-QQLLSRWREKVFALM 319 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCchhHHHH-HHHHHHHHHHHHHHH
Confidence 556677777777777775555554221122233333222221111111111 1112222 232321
Q ss_pred ---HHhhHH--HHHHHHHHhhhhhhhhchhhhhhhcccccchhhhhhhhhhHHhHHHHHHHhHHHHHHH
Q 008522 461 ---AIWDME--TLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIE 524 (563)
Q Consensus 461 ---ti~DME--~vIedLksKv~kaE~rae~~E~kc~~LsEtN~eLneELsflrsk~~~LE~sL~~A~~~ 524 (563)
+..|++ +-+..|+.||+-.+.+..+...+-++|.-+==.=.-|+.+=|...+.|...|..|..+
T Consensus 320 VQLkaQeleh~~~~~qL~~qVAsLQeev~sq~qEqaiLq~SLqDK~AElevERv~sktLQ~ELsrAqea 388 (739)
T PF07111_consen 320 VQLKAQELEHRDSVKQLRGQVASLQEEVASQQQEQAILQHSLQDKAAELEVERVGSKTLQAELSRAQEA 388 (739)
T ss_pred HHhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 223333 4556666666666655555555555554432222334444455555566666555543
No 142
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=64.07 E-value=2.7e+02 Score=31.91 Aligned_cols=80 Identities=15% Similarity=0.252 Sum_probs=50.7
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHhhhhhhhHHHHHH
Q 008522 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEE 412 (563)
Q Consensus 333 ~SE~~sL~eKv~sLEeQLkese~Ql~~akas~ea~~~~isdmEn~IedLK~kvskAESRAe~AEskc~lLteTN~EL~eE 412 (563)
...+..+.+++..+|.++.+.+.++..+-.. +.+..+..-.+.+..++.+++........++..+...-..++.+
T Consensus 390 ~~~~~~~~~~~~~~e~el~~l~~~l~~~~~~-----e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~ 464 (650)
T TIGR03185 390 QDAKSQLLKELRELEEELAEVDKKISTIPSE-----EQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKT 464 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677788888888888888888887765432 34455555555556666666655555555665555555555555
Q ss_pred Hhhhh
Q 008522 413 INFLK 417 (563)
Q Consensus 413 L~~Lk 417 (563)
+..+.
T Consensus 465 ~~~~~ 469 (650)
T TIGR03185 465 LDEKT 469 (650)
T ss_pred HHHHH
Confidence 54443
No 143
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=63.94 E-value=2.2e+02 Score=34.21 Aligned_cols=67 Identities=25% Similarity=0.253 Sum_probs=38.9
Q ss_pred HHHHHHHhhhhhhhhHHHHHhhhhhhhHHHHHHHhhhhcCCCCcchhhhhhHHHHhhHHHHHHHhHh
Q 008522 380 SLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKV 446 (563)
Q Consensus 380 dLK~kvskAESRAe~AEskc~lLteTN~EL~eEL~~Lks~~ss~~ek~~~LE~qLkese~QLqhA~A 446 (563)
+.-.+|.--|.|--||-...+--.+-|.+|+.+|..-..----+-+|..+|-.+|...+.+|+++-+
T Consensus 67 d~E~ritt~e~rflnaqre~t~~~d~ndklE~~Lankda~lrq~eekn~slqerLelaE~~l~qs~r 133 (916)
T KOG0249|consen 67 DMEERITTLEKRFLNAQRESTSIHDLNDKLENELANKDADLRQNEEKNRSLQERLELAEPKLQQSLR 133 (916)
T ss_pred ccccccchHHHHHHhccCCCCCcccchHHHHHHHhCcchhhchhHHhhhhhhHHHHHhhHhhHhHHh
Confidence 3334444455666666666666777788888877654332111345555666666666666665555
No 144
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=63.85 E-value=42 Score=32.54 Aligned_cols=60 Identities=18% Similarity=0.244 Sum_probs=34.3
Q ss_pred hhhhhhcccccchhhhhhhhhhHHhHHHHHHHhHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 008522 485 SVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQ 554 (563)
Q Consensus 485 ~~E~kc~~LsEtN~eLneELsflrsk~~~LE~sL~~A~~~K~~TakdI~~~tK~i~dLv~qLa~ERErL~ 554 (563)
..+...-.....|-.|+-|+..|.-.++.+|.++.....+.. .++.-++..-+.|-++++
T Consensus 134 ~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~----------~Lv~Rwm~~k~~eAe~mN 193 (194)
T PF08614_consen 134 DLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENR----------ELVERWMQRKAQEAERMN 193 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHhc
Confidence 333335555566667777777777777777777766665543 344444444455555443
No 145
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=63.61 E-value=3.2e+02 Score=32.62 Aligned_cols=43 Identities=19% Similarity=0.146 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhcc
Q 008522 256 FRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLN 298 (563)
Q Consensus 256 ~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~ 298 (563)
.........+-.++.+..|-.+-+...+.....++-.++..++
T Consensus 399 ~~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~~~~~~~ 441 (908)
T COG0419 399 AELSAALEEIQEELEELEKELEELERELEELEEEIKKLEEQIN 441 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444555555444444444444444444443333
No 146
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=63.50 E-value=2.1e+02 Score=30.49 Aligned_cols=20 Identities=15% Similarity=0.204 Sum_probs=11.2
Q ss_pred chhhhhhHHHHhhHHHHHHH
Q 008522 424 TKKVGILENQLRDLEIQLQQ 443 (563)
Q Consensus 424 ~ek~~~LE~qLkese~QLqh 443 (563)
.-++-.+..++...+.++..
T Consensus 281 hP~v~~l~~~i~~l~~~l~~ 300 (444)
T TIGR03017 281 HPQYKRAQAEINSLKSQLNA 300 (444)
T ss_pred CcHHHHHHHHHHHHHHHHHH
Confidence 34555566666665555544
No 147
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=63.31 E-value=2.7e+02 Score=33.18 Aligned_cols=158 Identities=17% Similarity=0.161 Sum_probs=0.0
Q ss_pred cccchhchhHHHHHHHhHHHHHhhhhHHHHHhhhc---CchhhhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhh
Q 008522 297 LNGSLQRESELKSKLGDFIEQLKAKDMVLQKLEST---KNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNE 373 (563)
Q Consensus 297 L~as~~REsel~sKL~~~~eqL~~k~~~Lekl~~s---~~SE~~sL~eKv~sLEeQLkese~Ql~~akas~ea~~~~isd 373 (563)
|..+.-||..+..++......|.+....+.-.... -......+.+-...+|.|.+.....+...|..--......++
T Consensus 22 l~esa~~E~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyse 101 (717)
T PF09730_consen 22 LQESASKEAYLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSE 101 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q ss_pred hHHHHHHHHHHHHhhhhhhhhHHHHHhhhhhhhHHHHHHHhhhhcCCCCcchhhhhhHHHHhhHHHHHHHhHhhhhhhHH
Q 008522 374 MDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQE 453 (563)
Q Consensus 374 mEn~IedLK~kvskAESRAe~AEskc~lLteTN~EL~eEL~~Lks~~ss~~ek~~~LE~qLkese~QLqhA~As~eAs~e 453 (563)
+|--|-.|...|+- .-++-.+..-|-.-+--|.+|+.+|+++ ++-+.+-=+-++.||+.|--+...--+
T Consensus 102 lEeENislQKqvs~----Lk~sQvefE~~Khei~rl~Ee~~~l~~q-------lee~~rLk~iae~qleEALesl~~ERe 170 (717)
T PF09730_consen 102 LEEENISLQKQVSV----LKQSQVEFEGLKHEIKRLEEEIELLNSQ-------LEEAARLKEIAEKQLEEALESLKSERE 170 (717)
T ss_pred HHHHHHHHHHHHHH----HHHhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhHHHHHhhH
Q 008522 454 QQSMLYSAIWDM 465 (563)
Q Consensus 454 qQ~ml~sti~DM 465 (563)
|=.-|.--+.+.
T Consensus 171 qk~~LrkEL~~~ 182 (717)
T PF09730_consen 171 QKNALRKELDQH 182 (717)
T ss_pred HHHHHHHHHHHh
No 148
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=63.10 E-value=1.4e+02 Score=28.33 Aligned_cols=51 Identities=33% Similarity=0.444 Sum_probs=24.9
Q ss_pred hHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHhhhhhhhHHHHHHHhhhh
Q 008522 367 SQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLK 417 (563)
Q Consensus 367 ~~~~isdmEn~IedLK~kvskAESRAe~AEskc~lLteTN~EL~eEL~~Lk 417 (563)
.+..+++...-+.+++........--....++..-+.+....+.+++..|+
T Consensus 100 l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 100 LQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445555555544444444444455555555555555554444
No 149
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=61.82 E-value=2.1e+02 Score=29.97 Aligned_cols=101 Identities=16% Similarity=0.140 Sum_probs=59.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhcccchhchhHHHHHHHhHHHHHhhhhHHHHHhhh
Q 008522 251 TEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLES 330 (563)
Q Consensus 251 ~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~Lekl~~ 330 (563)
..+-..|+++-...+-.++-+|+.+..-++.....+- ..+...--....+.|+.-+.+++.+-..+...-.
T Consensus 168 ~~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d---------~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~ 238 (362)
T TIGR01010 168 RKDTIAFAENEVKEAEQRLNATKAELLKYQIKNKVFD---------PKAQSSAQLSLISTLEGELIRVQAQLAQLRSITP 238 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcC---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 3556678888888888888888888777766433221 1111111122233333333333333222222222
Q ss_pred cCchhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 008522 331 TKNSEVLTMKEKVKSLEEQLKESEIRLQNA 360 (563)
Q Consensus 331 s~~SE~~sL~eKv~sLEeQLkese~Ql~~a 360 (563)
...|.+..+..++..|+.|+..-..++...
T Consensus 239 ~~~P~v~~l~~~i~~l~~~i~~e~~~i~~~ 268 (362)
T TIGR01010 239 EQNPQVPSLQARIKSLRKQIDEQRNQLSGG 268 (362)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 247999999999999999999877666543
No 150
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=60.04 E-value=1e+02 Score=32.49 Aligned_cols=56 Identities=18% Similarity=0.265 Sum_probs=41.0
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhh
Q 008522 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGA 388 (563)
Q Consensus 333 ~SE~~sL~eKv~sLEeQLkese~Ql~~akas~ea~~~~isdmEn~IedLK~kvskA 388 (563)
..|.-.+.+++...|+.+++...++...++..-....+-+.|...|..+|+||-+=
T Consensus 206 ~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~kf 261 (269)
T PF05278_consen 206 KEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVEKF 261 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45555677788888888888888887777776666666677777788888877654
No 151
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=59.84 E-value=83 Score=35.57 Aligned_cols=74 Identities=22% Similarity=0.244 Sum_probs=49.8
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHhhhhhhhHHHHHHHhhhhcCCCCcchhhhhhHHHHhhHHHHHHHhHhhhhhh
Q 008522 378 IESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEAS 451 (563)
Q Consensus 378 IedLK~kvskAESRAe~AEskc~lLteTN~EL~eEL~~Lks~~ss~~ek~~~LE~qLkese~QLqhA~As~eAs 451 (563)
...|+..-+.+|++-.++|.++.+|..+=..+..|+.++|.-.-...+-....=+++++.+.|+..|..+-+..
T Consensus 363 ~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~ 436 (493)
T KOG0804|consen 363 ADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEALGSKDEK 436 (493)
T ss_pred HHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677788888899999999999888888888888885322122234455566666666665555544443
No 152
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=59.16 E-value=2.4e+02 Score=29.70 Aligned_cols=31 Identities=19% Similarity=0.251 Sum_probs=18.0
Q ss_pred HHHHHhHHHHHhhHHHHHHHHHHhhhhhhhh
Q 008522 452 QEQQSMLYSAIWDMETLIEDLKSKVSKAESK 482 (563)
Q Consensus 452 ~eqQ~ml~sti~DME~vIedLksKv~kaE~r 482 (563)
+.+-..+...+.+...-|+..+.++...+.+
T Consensus 208 ~~eL~~lr~eL~~~~~~i~~~k~~l~el~~e 238 (325)
T PF08317_consen 208 QEELEALRQELAEQKEEIEAKKKELAELQEE 238 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445556666666666666666655544
No 153
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=58.88 E-value=1.1e+02 Score=34.24 Aligned_cols=52 Identities=37% Similarity=0.479 Sum_probs=44.2
Q ss_pred hhhhhHHHHhhHHHHHHHhH--------hhhhhhHHHHHhHHHHHhhHHHHHHHHHHhhhhhh
Q 008522 426 KVGILENQLRDLEIQLQQAK--------VSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAE 480 (563)
Q Consensus 426 k~~~LE~qLkese~QLqhA~--------As~eAs~eqQ~ml~sti~DME~vIedLksKv~kaE 480 (563)
|...||.||.+. ++||++. |+.+..+.=|+ |.-.+|++-..|-+++.++|.|
T Consensus 307 R~erLEEqLNdl-teLqQnEi~nLKqElasmeervaYQs--yERaRdIqEalEscqtrisKlE 366 (455)
T KOG3850|consen 307 RYERLEEQLNDL-TELQQNEIANLKQELASMEERVAYQS--YERARDIQEALESCQTRISKLE 366 (455)
T ss_pred HHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888876 5666654 89999998898 9999999999999999999888
No 154
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=58.41 E-value=1.7e+02 Score=31.09 Aligned_cols=112 Identities=13% Similarity=0.171 Sum_probs=57.2
Q ss_pred HHhhHHHhhhHHHHHhhhhhhhHHHHHHHHH-----------HHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhccc
Q 008522 231 EKKISELNQNEEQLKLKLHHTEQVAFRMEEA-----------AEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNG 299 (563)
Q Consensus 231 EkkL~~s~~~eeeLk~kL~~~eqe~~~lEE~-----------~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~a 299 (563)
.+.+.....+..+|..+......+...+... ...+-+++.+-..-.+..++.+.++...|+.+...+.
T Consensus 164 ~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~- 242 (312)
T smart00787 164 MKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIE- 242 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 3444444444444444444444444433333 3334455555555555555555555555555554444
Q ss_pred chhchhHHHHHHHhHHHHHhhhhHHHHHhhhcCchhhhhHHHHHHHHHHH
Q 008522 300 SLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQ 349 (563)
Q Consensus 300 s~~REsel~sKL~~~~eqL~~k~~~Lekl~~s~~SE~~sL~eKv~sLEeQ 349 (563)
+...+...+.+++..-+..++.-..-...|+..|..++..||++
T Consensus 243 ------~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~~Le~l 286 (312)
T smart00787 243 ------DLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQSL 286 (312)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 23333333344444334444444444567888888888887765
No 155
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=56.12 E-value=3.8e+02 Score=31.24 Aligned_cols=107 Identities=13% Similarity=0.163 Sum_probs=65.1
Q ss_pred hhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHH------HHhhhhHHhhhcccchhchhHHHHHH
Q 008522 238 NQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKE------MLGRFQIVQFNLNGSLQRESELKSKL 311 (563)
Q Consensus 238 ~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~ske------l~gkLq~~qf~L~as~~REsel~sKL 311 (563)
..+...+..|...+.+-..|+++-...+..++-.+|++.+-++-..+. ....++.+ .+++.+
T Consensus 252 ~Yi~~~l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~~~ea~~~l~~~-----------~~l~~q- 319 (726)
T PRK09841 252 NYLQQNIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQI-----------VNVDNQ- 319 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH-----------HHHHHH-
Confidence 346667777777777777788888888888888888877777653321 11111111 112222
Q ss_pred HhHHHHHhhhhHHHHHhhhcCchhhhhHHHHHHHHHHHHHHHHHHHhh
Q 008522 312 GDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQN 359 (563)
Q Consensus 312 ~~~~eqL~~k~~~Lekl~~s~~SE~~sL~eKv~sLEeQLkese~Ql~~ 359 (563)
+.++..+...+...-....|.+++|..++..|++++...+.++..
T Consensus 320 ---l~~l~~~~~~l~~~~~~~hP~v~~l~~~~~~L~~~~~~l~~~~~~ 364 (726)
T PRK09841 320 ---LNELTFREAEISQLYKKDHPTYRALLEKRQTLEQERKRLNKRVSA 364 (726)
T ss_pred ---HHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 222233333333333336899999999999999998887766543
No 156
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=55.95 E-value=81 Score=26.75 Aligned_cols=62 Identities=26% Similarity=0.315 Sum_probs=36.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHhhhhhhhHHHHHHH
Q 008522 334 SEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEI 413 (563)
Q Consensus 334 SE~~sL~eKv~sLEeQLkese~Ql~~akas~ea~~~~isdmEn~IedLK~kvskAESRAe~AEskc~lLteTN~EL~eEL 413 (563)
+++.+|++++.++..++.-++. .+..|-..=..|.+++..|-..|.-|..-|--|..||
T Consensus 5 a~~~~Lr~rLd~~~rk~~~~~~---------------------~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el 63 (69)
T PF14197_consen 5 AEIATLRNRLDSLTRKNSVHEI---------------------ENKRLRRERDSAERQLGDAYEENNKLKEENEALRKEL 63 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888888777765554 3444444445555555555555555555555555554
Q ss_pred hhh
Q 008522 414 NFL 416 (563)
Q Consensus 414 ~~L 416 (563)
..+
T Consensus 64 ~~~ 66 (69)
T PF14197_consen 64 EEL 66 (69)
T ss_pred HHh
Confidence 433
No 157
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=55.02 E-value=33 Score=36.19 Aligned_cols=76 Identities=13% Similarity=0.326 Sum_probs=63.1
Q ss_pred HHHHHhhhhhhhhHHhHHHHHHHHHhhhhcccceeccccchhhHHHHHHHhhhhhhhhHhhHHHHHHHHHHHHHhhHhhh
Q 008522 96 LVYDLLFGILDSELREVERLLDTIHVEIVNVHHKISSCKHLREVFTIMEKMEKKLHDCEGSLKESQEHVSELKMQSAKFQ 175 (563)
Q Consensus 96 ~efDlL~gildSEv~Ele~~~~~lq~~I~~~~~~~~s~~~~~~~f~~~~~~~~kL~~~~~sLkq~qe~~~eik~qsa~f~ 175 (563)
-.+++|+++||.-|.-+-..+..+..+|.+.++.|.+-.+ + ..+.+.-..+.+.++.++.+|.-...++
T Consensus 128 ~~~~vl~~Lld~iVd~~ad~lE~~~~~ld~ls~~if~~~~-~----------~~~~~~l~~i~~l~~~~~~~r~~l~~~~ 196 (316)
T PRK11085 128 NAYELLLDLFETKIEQLADEIENIYSDLEKLSRVIMEGHQ-G----------DEYDEALSTLAELEDIGWKVRLCLMDTQ 196 (316)
T ss_pred CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCCC-c----------hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3489999999999999999999999999999999876432 1 1234444779999999999999999999
Q ss_pred hhhhhcc
Q 008522 176 RVLSYFI 182 (563)
Q Consensus 176 r~~~~~~ 182 (563)
|++.++.
T Consensus 197 r~l~~l~ 203 (316)
T PRK11085 197 RALNFLV 203 (316)
T ss_pred HHHHHHh
Confidence 9998765
No 158
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=54.76 E-value=4.2e+02 Score=31.24 Aligned_cols=33 Identities=30% Similarity=0.353 Sum_probs=21.4
Q ss_pred HhhHHHHHHHHHHhhhhhhhhchhhhhhhcccccchhhhhhhhhhHHh
Q 008522 462 IWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRD 509 (563)
Q Consensus 462 i~DME~vIedLksKv~kaE~rae~~E~kc~~LsEtN~eLneELsflrs 509 (563)
+.+++.....|+.+. +.+ +.|.+|-.++-+|+|
T Consensus 282 ~~~L~~~~~~l~~~~-~e~--------------~~r~kL~N~i~eLkG 314 (670)
T KOG0239|consen 282 QSDLESLEENLVEKK-KEK--------------EERRKLHNEILELKG 314 (670)
T ss_pred HHHHHHHHHHHHHHH-HHH--------------HHHHHHHHHHHHhhc
Confidence 566666666666666 222 357788888877776
No 159
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=54.36 E-value=2.7e+02 Score=28.86 Aligned_cols=19 Identities=16% Similarity=0.443 Sum_probs=8.2
Q ss_pred HhhHHHHHHHHHHhhhhhh
Q 008522 462 IWDMETLIEDLKSKVSKAE 480 (563)
Q Consensus 462 i~DME~vIedLksKv~kaE 480 (563)
+.++..-|.+++.++..++
T Consensus 248 l~~~~~~l~~~~~~l~~~~ 266 (423)
T TIGR01843 248 LTEAQARLAELRERLNKAR 266 (423)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444433
No 160
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=54.14 E-value=3.7e+02 Score=30.33 Aligned_cols=95 Identities=15% Similarity=0.260 Sum_probs=57.9
Q ss_pred hHHHHHHHhHHHHHhhhhHHHHHhhhc---CchhhhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHh---hhHHHH
Q 008522 305 SELKSKLGDFIEQLKAKDMVLQKLEST---KNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLN---EMDNFI 378 (563)
Q Consensus 305 sel~sKL~~~~eqL~~k~~~Lekl~~s---~~SE~~sL~eKv~sLEeQLkese~Ql~~akas~ea~~~~is---dmEn~I 378 (563)
.++...+.++..+|+.-...+...-+. .+.+...+.+++..+....+.|+..+.......+..+.++. ..+.-+
T Consensus 269 ~~~~~~l~~~~~~l~d~~~~l~~~~~~l~~dp~~L~ele~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~l~~~~~~l 348 (563)
T TIGR00634 269 RELAEQVGNALTEVEEATRELQNYLDELEFDPERLNEIEERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQLDDSDESL 348 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 345555555555555444444333322 25567788889998888888888777666666555555444 334456
Q ss_pred HHHHHHHHhhhhhhhhHHHHH
Q 008522 379 ESLKESLYGAESRAESAEEKV 399 (563)
Q Consensus 379 edLK~kvskAESRAe~AEskc 399 (563)
+.|+.++.+++.+....-.+.
T Consensus 349 e~L~~el~~l~~~l~~~a~~L 369 (563)
T TIGR00634 349 EALEEEVDKLEEELDKAAVAL 369 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 677777777776665543333
No 161
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=54.00 E-value=2.5e+02 Score=28.39 Aligned_cols=35 Identities=23% Similarity=0.327 Sum_probs=24.9
Q ss_pred hhhhhhhHHhHHHHHHHhHHHHHHHHHhhHHHHHHH
Q 008522 500 LKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHR 535 (563)
Q Consensus 500 LneELsflrsk~~~LE~sL~~A~~~K~~TakdI~~~ 535 (563)
+..-|+-|.+|+.+|...|..| ..+..-|.++...
T Consensus 183 i~~~L~~~~~kL~Dl~~~l~eA-~~~~~ea~~ln~~ 217 (264)
T PF06008_consen 183 IRDDLNDYNAKLQDLRDLLNEA-QNKTREAEDLNRA 217 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 4556678889999999998888 4455555555554
No 162
>PHA02414 hypothetical protein
Probab=53.42 E-value=35 Score=31.47 Aligned_cols=75 Identities=24% Similarity=0.255 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHhhhhhhhhHHHHHhhhhhhhHHHHHHHhhhhcCCCCcchhhhhhHHHHhhHHHHHHHhHhhhhhhHHHH
Q 008522 376 NFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQ 455 (563)
Q Consensus 376 n~IedLK~kvskAESRAe~AEskc~lLteTN~EL~eEL~~Lks~~ss~~ek~~~LE~qLkese~QLqhA~As~eAs~eqQ 455 (563)
.-|.+|=++|-.-|++.+..+--- -++|.+|+.++..||+- +.+|.+.+- -+-|+|
T Consensus 4 ~~in~Lv~~v~~ledKiQ~Gelt~---kgdn~eL~~av~ELRdi-------vvslDKd~A--------------v~sEKq 59 (111)
T PHA02414 4 KEINNLVSQVETLEDKIQEGELTD---KGDNKELEVAVAELRDI-------VVSLDKDVA--------------VNSEKQ 59 (111)
T ss_pred hHHHHHHHHHHHHHHHHhcCcccc---CCchHHHHHHHHHHHHH-------HHHhhhHhh--------------hhHHHh
Confidence 345555556655555555544211 13899999999999985 778877662 345889
Q ss_pred HhHHHHHhhHHHHHHHHHH
Q 008522 456 SMLYSAIWDMETLIEDLKS 474 (563)
Q Consensus 456 ~ml~sti~DME~vIedLks 474 (563)
+-+|.-|.-+|.-|+.|-.
T Consensus 60 shi~yQi~~Lee~i~aL~~ 78 (111)
T PHA02414 60 SHIYYQIERLEEKISALAE 78 (111)
T ss_pred hHHHHHHHHHHHHHHHHHh
Confidence 9999999888888887753
No 163
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=52.08 E-value=4.5e+02 Score=30.74 Aligned_cols=142 Identities=18% Similarity=0.195 Sum_probs=82.2
Q ss_pred HHHHhccchHHHHhhhhHHHHhhhhHHhhhcccchhchhHHHHHHHhHHHHHhhhhHHHHHhhhcCchhhhhHHHHHHHH
Q 008522 267 GRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSL 346 (563)
Q Consensus 267 er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~Lekl~~s~~SE~~sL~eKv~sL 346 (563)
..+.|-.|+.-.|.+.--++-.+||+-|+--+....+=+++..||.... ++++. ++.|+..|+..-..+
T Consensus 167 ~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~----------e~le~-K~qE~~~Lq~q~dq~ 235 (617)
T PF15070_consen 167 EQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLK----------EKLEL-KSQEAQSLQEQRDQY 235 (617)
T ss_pred HHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHh-hhHHHHHHHHHHHHH
Confidence 4444555555555555555555555555443333222233333333333 34444 367888888877777
Q ss_pred HHHHHHHHHHHhhhhhchhhhHHH-------HhhhHHHHHHHHHHHHhhhhhhhhHHHHHhhhhhhhHHHHHHHhhhhcC
Q 008522 347 EEQLKESEIRLQNANACFQTSQEQ-------LNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGN 419 (563)
Q Consensus 347 EeQLkese~Ql~~akas~ea~~~~-------isdmEn~IedLK~kvskAESRAe~AEskc~lLteTN~EL~eEL~~Lks~ 419 (563)
-.+|.-|...-+......++...+ +..+.+--..-|..+-.+-.--+.+......++..|-+|...|+.+...
T Consensus 236 ~~~Lqqy~a~~q~l~~e~e~L~~q~l~Qtql~d~lq~eE~q~~~~~E~~~~ELq~~qe~Lea~~qqNqqL~~qls~~~~~ 315 (617)
T PF15070_consen 236 LGHLQQYVAAYQQLASEKEELHKQLLQQTQLMDRLQHEESQGKVQLEMAHQELQEAQEHLEALSQQNQQLQAQLSLMALP 315 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCC
Confidence 777777766555555555553322 2344333333344444566666788899999999999999999875443
No 164
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=47.49 E-value=3.7e+02 Score=31.65 Aligned_cols=76 Identities=16% Similarity=0.185 Sum_probs=35.6
Q ss_pred hhhhhhcccccchhhhhhhhhhHHhHHHHHHHhHHHHHHHHHhhHHHHHHHhHHHH----HHHHHH--HHHHHHHHHHHH
Q 008522 485 SVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMM----EMVMQL--ATQRELIQKQVL 558 (563)
Q Consensus 485 ~~E~kc~~LsEtN~eLneELsflrsk~~~LE~sL~~A~~~K~~TakdI~~~tK~i~----dLv~qL--a~ERErL~~Qis 558 (563)
.++..|...-+.+..|.+++..++.++..+.......-.+=....+.++...+-.. .++.++ -.+|-+||.+|-
T Consensus 231 ~l~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~e~~~r~kL~N~i~ 310 (670)
T KOG0239|consen 231 PLEGLESTIKKKIQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKKKEKEERRKLHNEIL 310 (670)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555554444443333333333333333322222 222222 155667777775
Q ss_pred Hh
Q 008522 559 IL 560 (563)
Q Consensus 559 sl 560 (563)
-|
T Consensus 311 eL 312 (670)
T KOG0239|consen 311 EL 312 (670)
T ss_pred Hh
Confidence 43
No 165
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=47.29 E-value=3e+02 Score=27.41 Aligned_cols=85 Identities=26% Similarity=0.323 Sum_probs=57.8
Q ss_pred hHHHHhhhhHHHHhhhhHHhhhcccchhchhHHHHHHHhHHHHHhhhhHHHHHhhhc----CchhhhhHHHHHHHHHHHH
Q 008522 275 SAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLEST----KNSEVLTMKEKVKSLEEQL 350 (563)
Q Consensus 275 a~EvL~g~skel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~Lekl~~s----~~SE~~sL~eKv~sLEeQL 350 (563)
+..++.+-..+ +......|+-+--++.++.-+++....++-.-...+.+|+.- .=+|...|..+|..++..+
T Consensus 59 Lpqll~~h~eE----vr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l 134 (194)
T PF15619_consen 59 LPQLLQRHNEE----VRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKL 134 (194)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHH
Confidence 34444444333 335566677777788888888888888887766666666654 2377788888888888888
Q ss_pred HHHHHHHhhhhhc
Q 008522 351 KESEIRLQNANAC 363 (563)
Q Consensus 351 kese~Ql~~akas 363 (563)
.+.+-.+....-.
T Consensus 135 ~~~~~ki~~Lek~ 147 (194)
T PF15619_consen 135 QEKEKKIQELEKQ 147 (194)
T ss_pred HHHHHHHHHHHHH
Confidence 8877776554433
No 166
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=47.19 E-value=2.4e+02 Score=26.28 Aligned_cols=97 Identities=24% Similarity=0.305 Sum_probs=63.9
Q ss_pred hhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHhhhhhhhHHHHHHHhhhhcCCCCcchhhhhhHHHHhhHHHHHHHh
Q 008522 365 QTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQA 444 (563)
Q Consensus 365 ea~~~~isdmEn~IedLK~kvskAESRAe~AEskc~lLteTN~EL~eEL~~Lks~~ss~~ek~~~LE~qLkese~QLqhA 444 (563)
+...+.|+..|.-+--+|..+...+..-+.+..+..-|+..|-++.... ..+..|+.++++.+...+-+
T Consensus 19 e~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~-----------~~~~~L~~el~~l~~ry~t~ 87 (120)
T PF12325_consen 19 ERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALK-----------KEVEELEQELEELQQRYQTL 87 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHH
Confidence 3345577777777888888888888888888888888887777764432 34566777888777666665
Q ss_pred HhhhhhhHHHHHhHHHHHhhHHHHHHHH
Q 008522 445 KVSSEASQEQQSMLYSAIWDMETLIEDL 472 (563)
Q Consensus 445 ~As~eAs~eqQ~ml~sti~DME~vIedL 472 (563)
----+-.-|+=..|..-|.||-.+....
T Consensus 88 LellGEK~E~veEL~~Dv~DlK~myr~Q 115 (120)
T PF12325_consen 88 LELLGEKSEEVEELRADVQDLKEMYREQ 115 (120)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 5444444444445666666666554443
No 167
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=45.44 E-value=7.2e+02 Score=31.23 Aligned_cols=52 Identities=23% Similarity=0.261 Sum_probs=35.8
Q ss_pred hhhhhhhHHHHHHHhhhhcCCCCcchhhhhhHHHHhhHHHHHHHhHhhhhhhHHHHHhH
Q 008522 400 TQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSML 458 (563)
Q Consensus 400 ~lLteTN~EL~eEL~~Lks~~ss~~ek~~~LE~qLkese~QLqhA~As~eAs~eqQ~ml 458 (563)
..+.+.|.+|..+|...- ++.+.|-.+-.....|++....+-.+.+||=+.|
T Consensus 261 ~~~~~~N~~Ls~~L~~~t-------~~~n~l~~~~~~~~~~l~~~~q~~~~i~eQi~~l 312 (1109)
T PRK10929 261 VAQFKINRELSQALNQQA-------QRMDLIASQQRQAASQTLQVRQALNTLREQSQWL 312 (1109)
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334467888888877654 4577787777777777777777766666654433
No 168
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=45.23 E-value=34 Score=31.18 Aligned_cols=53 Identities=19% Similarity=0.341 Sum_probs=45.4
Q ss_pred hHHHHHhhHHHHHHHHHHhhhhhhhhchhhhhhhcccccchhhhhhhhhhHHhHHHHHHH
Q 008522 457 MLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILES 516 (563)
Q Consensus 457 ml~sti~DME~vIedLksKv~kaE~rae~~E~kc~~LsEtN~eLneELsflrsk~~~LE~ 516 (563)
-||..+..||.=|..|-.++...... ..-|-|.|..|.-|-.-||.|+..++.
T Consensus 5 ~l~~~l~~le~~l~~l~~~~~~LK~~-------~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 5 ELFDRLDQLEQQLGQLLEELEELKKQ-------LQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 37888899998888888888766655 788899999999999999999998766
No 169
>PLN02939 transferase, transferring glycosyl groups
Probab=44.94 E-value=7e+02 Score=30.97 Aligned_cols=87 Identities=22% Similarity=0.303 Sum_probs=44.4
Q ss_pred chhhhhhHHHHhhHHHHHHHhHhhhhhhHHHHHhHHHHHhhHH-------------HHHHHHHHhhhhhhhhchhhhhhh
Q 008522 424 TKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDME-------------TLIEDLKSKVSKAESKTESVEEQC 490 (563)
Q Consensus 424 ~ek~~~LE~qLkese~QLqhA~As~eAs~eqQ~ml~sti~DME-------------~vIedLksKv~kaE~rae~~E~kc 490 (563)
-+||+.|.--|-..-.|.++|.....-++. |.-++.-+| ..|+-|+.|+--.|.|
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 366 (977)
T PLN02939 299 WEKVENLQDLLDRATNQVEKAALVLDQNQD----LRDKVDKLEASLKEANVSKFSSYKVELLQQKLKLLEER-------- 366 (977)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchH----HHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHH--------
Confidence 466777777776666666666555444433 222222222 1334444444444433
Q ss_pred cccccchhhhhhhhhhHHhHHHHHHHhHHHHHHH
Q 008522 491 IVLSEDNFELKNKQSFMRDKIKILESSLNRANIE 524 (563)
Q Consensus 491 ~~LsEtN~eLneELsflrsk~~~LE~sL~~A~~~ 524 (563)
|-.++.+++-.+.-|..-++..+.+|+....+
T Consensus 367 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (977)
T PLN02939 367 --LQASDHEIHSYIQLYQESIKEFQDTLSKLKEE 398 (977)
T ss_pred --HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44455555555555555555555555554333
No 170
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=44.54 E-value=1.9e+02 Score=28.55 Aligned_cols=73 Identities=22% Similarity=0.291 Sum_probs=44.9
Q ss_pred CchhhhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHhhhhhhhHHHHH
Q 008522 332 KNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSE 411 (563)
Q Consensus 332 ~~SE~~sL~eKv~sLEeQLkese~Ql~~akas~ea~~~~isdmEn~IedLK~kvskAESRAe~AEskc~lLteTN~EL~e 411 (563)
+.-+...+..++..|.+++......+...... |++.|..-...+.|+. ...++..|...+.+|..
T Consensus 60 ps~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~--------------i~~~~~~r~~~~eR~~-~l~~l~~l~~~~~~l~~ 124 (188)
T PF03962_consen 60 PSQAKQKRQNKLEKLQKEIEELEKKIEELEEK--------------IEEAKKGREESEEREE-LLEELEELKKELKELKK 124 (188)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHhcccccHHHHH-HHHHHHHHHHHHHHHHH
Confidence 45566666677666666666555544433333 5555444434444544 56677778888888888
Q ss_pred HHhhhhcC
Q 008522 412 EINFLKGN 419 (563)
Q Consensus 412 EL~~Lks~ 419 (563)
+|..++..
T Consensus 125 el~~~~~~ 132 (188)
T PF03962_consen 125 ELEKYSEN 132 (188)
T ss_pred HHHHHHhc
Confidence 88866665
No 171
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=42.36 E-value=18 Score=38.76 Aligned_cols=54 Identities=24% Similarity=0.339 Sum_probs=31.5
Q ss_pred HHHHHHhhhhhhhhchhhhhhhcccccchhhhhhhhhhHHhHHHHHHHhHHHHH
Q 008522 469 IEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRAN 522 (563)
Q Consensus 469 IedLksKv~kaE~rae~~E~kc~~LsEtN~eLneELsflrsk~~~LE~sL~~A~ 522 (563)
++.|.+.+..+|.|...+|+.+.-++.+.-.+...+..+..++.+||+...+.|
T Consensus 139 ~~~l~~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnrsRRnN 192 (370)
T PF02994_consen 139 DESLNSRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLENRSRRNN 192 (370)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTE
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhccCCc
Confidence 345555555555555555555666666666666677777777777777665543
No 172
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=41.92 E-value=3.6e+02 Score=26.83 Aligned_cols=50 Identities=20% Similarity=0.340 Sum_probs=23.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHH
Q 008522 336 VLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESL 385 (563)
Q Consensus 336 ~~sL~eKv~sLEeQLkese~Ql~~akas~ea~~~~isdmEn~IedLK~kv 385 (563)
.+++.+.-..+=+..+..+.++....+......++|..+|.-|-+|++..
T Consensus 98 LL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~ 147 (190)
T PF05266_consen 98 LLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQA 147 (190)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 33333333333334444444444444444444556666666666665543
No 173
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=41.11 E-value=1e+02 Score=26.49 Aligned_cols=52 Identities=29% Similarity=0.394 Sum_probs=42.5
Q ss_pred hHHHHhhhHHHHHHHHHHHHhhhhhhhh-HHHHHhhhhhhhHHHHHHHhhhhc
Q 008522 367 SQEQLNEMDNFIESLKESLYGAESRAES-AEEKVTQLTDTNLELSEEINFLKG 418 (563)
Q Consensus 367 ~~~~isdmEn~IedLK~kvskAESRAe~-AEskc~lLteTN~EL~eEL~~Lks 418 (563)
...+|+.+..-|=+||-+|+=-|.|..+ +..-..-+-..|++|+-++..|+.
T Consensus 5 qe~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~ 57 (75)
T PF07989_consen 5 QEEQIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKR 57 (75)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 4557778888899999999999999985 566777788889999888777776
No 174
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=40.44 E-value=26 Score=24.49 Aligned_cols=20 Identities=25% Similarity=0.406 Sum_probs=17.3
Q ss_pred hhhhhHHhHHHHHHHhHHHH
Q 008522 502 NKQSFMRDKIKILESSLNRA 521 (563)
Q Consensus 502 eELsflrsk~~~LE~sL~~A 521 (563)
+|+.-||.|+.+||..|...
T Consensus 1 ~E~~rlr~rI~dLer~L~~C 20 (23)
T PF04508_consen 1 REMNRLRNRISDLERQLSEC 20 (23)
T ss_pred ChHHHHHHHHHHHHHHHHHH
Confidence 47889999999999999754
No 175
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=40.27 E-value=29 Score=37.35 Aligned_cols=54 Identities=19% Similarity=0.330 Sum_probs=0.0
Q ss_pred hhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHhhhhhhhHHHHHHHhhhhcC
Q 008522 366 TSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGN 419 (563)
Q Consensus 366 a~~~~isdmEn~IedLK~kvskAESRAe~AEskc~lLteTN~EL~eEL~~Lks~ 419 (563)
+..+.++.||..++.|-+.|....++...-++.|.-++.+=.+++.+|+.|.+.
T Consensus 32 ~I~eRLsaLEssv~sL~~SVs~lss~iSdLss~L~~l~~sl~~~~s~L~sLsst 85 (326)
T PF04582_consen 32 PIRERLSALESSVASLSDSVSSLSSTISDLSSDLQDLASSLADMTSELNSLSST 85 (326)
T ss_dssp ------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777888888888888887777777777777777777777777777665
No 176
>PF12001 DUF3496: Domain of unknown function (DUF3496); InterPro: IPR021885 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 110 amino acids in length.
Probab=39.75 E-value=1.8e+02 Score=27.10 Aligned_cols=78 Identities=19% Similarity=0.246 Sum_probs=46.8
Q ss_pred hhHHHHHHHHHHhhhhhhh-hchhhhhhhcccccchhhhhhhhhhHHhHHHHHHHhHHHHHHHHHhhHHHHHHHhHHHHH
Q 008522 463 WDMETLIEDLKSKVSKAES-KTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMME 541 (563)
Q Consensus 463 ~DME~vIedLksKv~kaE~-rae~~E~kc~~LsEtN~eLneELsflrsk~~~LE~sL~~A~~~K~~TakdI~~~tK~i~d 541 (563)
+.||.-|.||.++++|..+ ..|+ +.+. |--|+.-. +. +.....+-.+.+.-.++-+.+
T Consensus 3 sQmElrIkdLeselsk~Ktsq~d~--------~~~e------LEkYkqly------~e-Elk~r~SLs~kL~ktnerLae 61 (111)
T PF12001_consen 3 SQMELRIKDLESELSKMKTSQEDS--------NKTE------LEKYKQLY------LE-ELKLRKSLSNKLNKTNERLAE 61 (111)
T ss_pred hHHHHHHHHHHHHHHHhHhHhhhh--------hHHH------HHHHHHHH------HH-HHHHHHHHHHHHHHHHHHHHH
Confidence 3689999999999999883 2111 1222 22232211 11 111112223444455667788
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 008522 542 MVMQLATQRELIQKQVLILL 561 (563)
Q Consensus 542 Lv~qLa~ERErL~~Qissl~ 561 (563)
.-++|-.|+|+=.+.+++++
T Consensus 62 vstkLl~Ekeq~rs~lstlt 81 (111)
T PF12001_consen 62 VSTKLLVEKEQNRSLLSTLT 81 (111)
T ss_pred HhhHHHHHHHhccccccccC
Confidence 88999999999888888774
No 177
>PRK09343 prefoldin subunit beta; Provisional
Probab=39.72 E-value=2.2e+02 Score=26.17 Aligned_cols=108 Identities=17% Similarity=0.208 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHH-----HHHhhhhhhhhHHHHHhhhhhhhHHHH
Q 008522 336 VLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKE-----SLYGAESRAESAEEKVTQLTDTNLELS 410 (563)
Q Consensus 336 ~~sL~eKv~sLEeQLkese~Ql~~akas~ea~~~~isdmEn~IedLK~-----kvskAESRAe~AEskc~lLteTN~EL~ 410 (563)
.+.|..++..+=.++..+.-++..+.........+++..+.++++|.. +|++.=-+.---. -..+....|+
T Consensus 2 ~~~~~~~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L~~d~~VYk~VG~vlv~q----d~~e~~~~l~ 77 (121)
T PRK09343 2 AENIPPEVQAQLAQLQQLQQQLERLLQQKSQIDLELREINKALEELEKLPDDTPIYKIVGNLLVKV----DKTKVEKELK 77 (121)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhhHHHhhc----cHHHHHHHHH
Q ss_pred HHHhhhhcCCCCcchhhhhhHHHHhhHHHHHHHhHhh
Q 008522 411 EEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVS 447 (563)
Q Consensus 411 eEL~~Lks~~ss~~ek~~~LE~qLkese~QLqhA~As 447 (563)
+.+.++..+-....++...|++++.+...+|+.+.++
T Consensus 78 ~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~~ 114 (121)
T PRK09343 78 ERKELLELRSRTLEKQEKKLREKLKELQAKINEMLSK 114 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 178
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=39.08 E-value=1.4e+02 Score=28.27 Aligned_cols=19 Identities=26% Similarity=0.407 Sum_probs=11.4
Q ss_pred hhhhhhHHHHHHHhhhhcC
Q 008522 401 QLTDTNLELSEEINFLKGN 419 (563)
Q Consensus 401 lLteTN~EL~eEL~~Lks~ 419 (563)
.|...+.+|...|..|++.
T Consensus 120 ~l~~e~~~l~~kL~~l~~~ 138 (169)
T PF07106_consen 120 ELEEEIEELEEKLEKLRSG 138 (169)
T ss_pred HHHHHHHHHHHHHHHHHhC
Confidence 3444455666667777774
No 179
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=38.61 E-value=3.8e+02 Score=26.11 Aligned_cols=16 Identities=13% Similarity=0.160 Sum_probs=9.3
Q ss_pred HHHhhhhHHHHhhhhH
Q 008522 277 EVLMGISKEMLGRFQI 292 (563)
Q Consensus 277 EvL~g~skel~gkLq~ 292 (563)
-+++|..+.+++++.-
T Consensus 8 ~~~~a~~~~~ld~~ED 23 (221)
T PF04012_consen 8 TLVKANINELLDKAED 23 (221)
T ss_pred HHHHHHHHHHHHhhcC
Confidence 3566666666666553
No 180
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=38.23 E-value=2e+02 Score=24.46 Aligned_cols=22 Identities=36% Similarity=0.444 Sum_probs=8.9
Q ss_pred hhHHHHHHHHHHHHhhhhhhhh
Q 008522 373 EMDNFIESLKESLYGAESRAES 394 (563)
Q Consensus 373 dmEn~IedLK~kvskAESRAe~ 394 (563)
+.|..|.+++.++.+++...++
T Consensus 44 e~e~~~~~l~~~~~~~e~~~~~ 65 (74)
T PF12329_consen 44 ELEKQIKELKKKLEELEKELES 65 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444443333
No 181
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=36.42 E-value=34 Score=27.61 Aligned_cols=29 Identities=28% Similarity=0.308 Sum_probs=17.9
Q ss_pred hcccccchhhhhhhhhhHHhHHHHHHHhH
Q 008522 490 CIVLSEDNFELKNKQSFMRDKIKILESSL 518 (563)
Q Consensus 490 c~~LsEtN~eLneELsflrsk~~~LE~sL 518 (563)
+..|+..|-.|..++..|...+..|.+.+
T Consensus 35 ~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 35 VEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33444556666677777777777666544
No 182
>PRK11519 tyrosine kinase; Provisional
Probab=36.12 E-value=6.6e+02 Score=29.30 Aligned_cols=28 Identities=25% Similarity=0.275 Sum_probs=22.1
Q ss_pred CchhhhhHHHHHHHHHHHHHHHHHHHhh
Q 008522 332 KNSEVLTMKEKVKSLEEQLKESEIRLQN 359 (563)
Q Consensus 332 ~~SE~~sL~eKv~sLEeQLkese~Ql~~ 359 (563)
..|.+.+|..+...|+.++...+.+...
T Consensus 337 ~hP~v~~l~~~~~~L~~~~~~l~~~~~~ 364 (719)
T PRK11519 337 EHPAYRTLLEKRKALEDEKAKLNGRVTA 364 (719)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5789999998888888888877765543
No 183
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=35.81 E-value=6e+02 Score=27.51 Aligned_cols=125 Identities=22% Similarity=0.274 Sum_probs=77.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHhhhhhhhHHHHHHHhh
Q 008522 336 VLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINF 415 (563)
Q Consensus 336 ~~sL~eKv~sLEeQLkese~Ql~~akas~ea~~~~isdmEn~IedLK~kvskAESRAe~AEskc~lLteTN~EL~eEL~~ 415 (563)
.-.|+.|++.||+.-........+.+.....++++= ..+|.|-=...+.|-.....-......=++.|..-.+|+..
T Consensus 162 le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekE---qqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~ 238 (306)
T PF04849_consen 162 LEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKE---QQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITS 238 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHH---HHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458999999999876666555444443222222211 11233344445666666666667777778888888999999
Q ss_pred hhcCCCCcchhhhhhHHHHhhHHHHHHHhHhhhhhhHHHHHhHHHHHhhHHHHHHHHHHhhh
Q 008522 416 LKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVS 477 (563)
Q Consensus 416 Lks~~ss~~ek~~~LE~qLkese~QLqhA~As~eAs~eqQ~ml~sti~DME~vIedLksKv~ 477 (563)
|.++ +--|++++|.+=..-++...-..+.++-|.-|-+- +.||+.||.
T Consensus 239 Llsq-------ivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aE-------L~elqdkY~ 286 (306)
T PF04849_consen 239 LLSQ-------IVDLQQRCKQLAAENEELQQHLQASKESQRQLQAE-------LQELQDKYA 286 (306)
T ss_pred HHHH-------HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH
Confidence 9986 77788888876544444444444555555544433 556666665
No 184
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=35.56 E-value=6.9e+02 Score=28.18 Aligned_cols=72 Identities=18% Similarity=0.262 Sum_probs=42.6
Q ss_pred HHHHHhhhhHHHHHhhhc---CchhhhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHH
Q 008522 314 FIEQLKAKDMVLQKLEST---KNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESL 385 (563)
Q Consensus 314 ~~eqL~~k~~~Lekl~~s---~~SE~~sL~eKv~sLEeQLkese~Ql~~akas~ea~~~~isdmEn~IedLK~kv 385 (563)
...+|.+-...++.+..+ ..-+...|..-++++|+.+...+-|+.............|++++.-++.|..+-
T Consensus 36 ~~~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 36 DDKQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 335666655666655554 244555666666666666666666666666665556666666666666555443
No 185
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=35.26 E-value=2.3e+02 Score=22.56 Aligned_cols=81 Identities=25% Similarity=0.356 Sum_probs=46.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHhhhhhh----hHHHHH
Q 008522 336 VLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDT----NLELSE 411 (563)
Q Consensus 336 ~~sL~eKv~sLEeQLkese~Ql~~akas~ea~~~~isdmEn~IedLK~kvskAESRAe~AEskc~lLteT----N~EL~e 411 (563)
.+.....+..+..||...+..+..... ......+..+-.-...++..+...+.+.+.....+..|..+ ...+..
T Consensus 3 ~~~f~~~~~~l~~Wl~~~e~~l~~~~~--~~~~~~~~~~~~~~~~~~~ei~~~~~~l~~l~~~~~~L~~~~~~~~~~i~~ 80 (105)
T PF00435_consen 3 LQQFQQEADELLDWLQETEAKLSSSEP--GSDLEELEEQLKKHKELQEEIESRQERLESLNEQAQQLIDSGPEDSDEIQE 80 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSCTH--SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCC--CCCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHH
Confidence 456677889999999999888854433 22233333333344455555555555566666666666444 344555
Q ss_pred HHhhhhc
Q 008522 412 EINFLKG 418 (563)
Q Consensus 412 EL~~Lks 418 (563)
.+..|..
T Consensus 81 ~~~~l~~ 87 (105)
T PF00435_consen 81 KLEELNQ 87 (105)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555554
No 186
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=35.18 E-value=2.4e+02 Score=24.04 Aligned_cols=46 Identities=20% Similarity=0.234 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhh
Q 008522 345 SLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAES 390 (563)
Q Consensus 345 sLEeQLkese~Ql~~akas~ea~~~~isdmEn~IedLK~kvskAES 390 (563)
+|++.|++=+.|++.....-+..-.+.-.+.++|..|+.++...|.
T Consensus 2 sl~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~ 47 (74)
T PF12329_consen 2 SLEKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEK 47 (74)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 5667777777777766665555444555677777777777666554
No 187
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=35.10 E-value=9e+02 Score=29.34 Aligned_cols=62 Identities=23% Similarity=0.352 Sum_probs=41.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHhhhhhhhHHHHHHHhhhh
Q 008522 338 TMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLK 417 (563)
Q Consensus 338 sL~eKv~sLEeQLkese~Ql~~akas~ea~~~~isdmEn~IedLK~kvskAESRAe~AEskc~lLteTN~EL~eEL~~Lk 417 (563)
++..||..|++|++..=. .|-.+ +++.+.||.||..|.+|=+..+..
T Consensus 646 ~~k~KIe~L~~eIkkkIe---~av~s--------s~LK~k~E~Lk~Evaka~~~pd~~---------------------- 692 (762)
T PLN03229 646 NLQEKIESLNEEINKKIE---RVIRS--------SDLKSKIELLKLEVAKASKTPDVT---------------------- 692 (762)
T ss_pred hhHHHHHHHHHHHHHHHH---HHhcc--------hhHHHHHHHHHHHHHhcCCCCCcc----------------------
Confidence 458899999999885433 33222 367788888888885553332221
Q ss_pred cCCCCcchhhhhhHHHHhhH
Q 008522 418 GNNDSNTKKVGILENQLRDL 437 (563)
Q Consensus 418 s~~ss~~ek~~~LE~qLkes 437 (563)
...|++.||.|+|..
T Consensus 693 -----~k~kieal~~qik~~ 707 (762)
T PLN03229 693 -----EKEKIEALEQQIKQK 707 (762)
T ss_pred -----hHHHHHHHHHHHHHH
Confidence 137899999999864
No 188
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=34.46 E-value=6.4e+02 Score=27.49 Aligned_cols=24 Identities=21% Similarity=0.297 Sum_probs=11.8
Q ss_pred hhhhhhhhHHhHHHHHHHhHHHHH
Q 008522 499 ELKNKQSFMRDKIKILESSLNRAN 522 (563)
Q Consensus 499 eLneELsflrsk~~~LE~sL~~A~ 522 (563)
...+++.-.+.++..++..+..|.
T Consensus 288 ~~~~~l~~~~~~l~~~~~~l~~a~ 311 (457)
T TIGR01000 288 KVKQEITDLNQKLLELESKIKSLK 311 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555444443
No 189
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=34.44 E-value=2e+02 Score=33.78 Aligned_cols=34 Identities=26% Similarity=0.444 Sum_probs=29.1
Q ss_pred HHHHHHhhhhhhhHHHhhHHHhhhHHHHHhhhhhhhH
Q 008522 217 LRMLEKSLARELDLEKKISELNQNEEQLKLKLHHTEQ 253 (563)
Q Consensus 217 LrMLekSlA~EldLEkkL~~s~~~eeeLk~kL~~~eq 253 (563)
+||++.-|. .|+++|.+.....++|+-+|....+
T Consensus 476 i~~~~~~I~---~L~~~L~e~~~~ve~L~~~l~~l~k 509 (652)
T COG2433 476 IRARDRRIE---RLEKELEEKKKRVEELERKLAELRK 509 (652)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777776 4999999999999999999988774
No 190
>PF13514 AAA_27: AAA domain
Probab=33.61 E-value=9.9e+02 Score=29.38 Aligned_cols=63 Identities=14% Similarity=0.241 Sum_probs=43.3
Q ss_pred hhhhhHHhHHHHHHHHHhhhhcccceeccccchhhHHHHHHHhhhhhhhhHhhHHHHHHHHHHHHHhhHhhhhhhhh
Q 008522 104 ILDSELREVERLLDTIHVEIVNVHHKISSCKHLREVFTIMEKMEKKLHDCEGSLKESQEHVSELKMQSAKFQRVLSY 180 (563)
Q Consensus 104 ildSEv~Ele~~~~~lq~~I~~~~~~~~s~~~~~~~f~~~~~~~~kL~~~~~sLkq~qe~~~eik~qsa~f~r~~~~ 180 (563)
.+..=|++-|.+.|.+..+-..+... ..+...+......+.+.+..+.+...+.+.|......
T Consensus 527 ~fe~a~~~aD~laD~~~~~a~~~a~~--------------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~ 589 (1111)
T PF13514_consen 527 AFEAAVREADELADRRLREAERAARL--------------AQLRARLEEARARLARAQARLAAAEAALAALEAAWAA 589 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556788888888888777766552 1235566666777777777777777777777776654
No 191
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=32.98 E-value=1.1e+02 Score=26.23 Aligned_cols=18 Identities=28% Similarity=0.715 Sum_probs=8.8
Q ss_pred cchhhhhhhhhhHHhHHH
Q 008522 495 EDNFELKNKQSFMRDKIK 512 (563)
Q Consensus 495 EtN~eLneELsflrsk~~ 512 (563)
..|+-|.-.+-||+.++.
T Consensus 14 KENF~LKLrI~fLee~l~ 31 (75)
T PF07989_consen 14 KENFNLKLRIYFLEERLQ 31 (75)
T ss_pred HhhhhHHHHHHHHHHHHH
Confidence 345555555555544444
No 192
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=32.98 E-value=1.5e+02 Score=27.82 Aligned_cols=53 Identities=23% Similarity=0.349 Sum_probs=41.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhhc----hhhhHHHHhhhHHHHHHHHHHHHhh
Q 008522 336 VLTMKEKVKSLEEQLKESEIRLQNANAC----FQTSQEQLNEMDNFIESLKESLYGA 388 (563)
Q Consensus 336 ~~sL~eKv~sLEeQLkese~Ql~~akas----~ea~~~~isdmEn~IedLK~kvskA 388 (563)
..+|..+|+.|.+-+|+|+-......++ .++.+..+.++|..+..+|.+|+.-
T Consensus 10 ~~~l~~~v~~lRed~r~SEdrsa~SRa~mhrRlDElV~Rv~~lEs~~~~lk~dVsem 66 (112)
T PF07439_consen 10 LGTLNAEVKELREDIRRSEDRSAASRASMHRRLDELVERVTTLESSVSTLKADVSEM 66 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHhhHHhc
Confidence 4578889999999999999876544444 3667788889999999999888653
No 193
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=32.86 E-value=4.1e+02 Score=24.84 Aligned_cols=43 Identities=23% Similarity=0.357 Sum_probs=31.3
Q ss_pred cccchhhhhhhhhhHHhHHHHHHHhHHHHH--HHHHhhHH-HHHHH
Q 008522 493 LSEDNFELKNKQSFMRDKIKILESSLNRAN--IEKAASAK-EVNHR 535 (563)
Q Consensus 493 LsEtN~eLneELsflrsk~~~LE~sL~~A~--~~K~~Tak-dI~~~ 535 (563)
|..+|--|..+-...-.|+.+|+.++..|. .+.+-.|| ++..|
T Consensus 42 L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK~ak~~l~~r 87 (107)
T PF09304_consen 42 LRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDEKQAKLELESR 87 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777788888888888888888888887663 34455566 55544
No 194
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=32.35 E-value=55 Score=35.21 Aligned_cols=58 Identities=29% Similarity=0.385 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHhhhhhhhHHHHHHHhhhhcCCCCcchhhhhhHHHHhhHHH
Q 008522 375 DNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEI 439 (563)
Q Consensus 375 En~IedLK~kvskAESRAe~AEskc~lLteTN~EL~eEL~~Lks~~ss~~ek~~~LE~qLkese~ 439 (563)
++++.+|...|..+|.|....+..+..++.+...+...+..|.+ ++.-||++.+..++
T Consensus 136 ~~~~~~l~~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~-------kl~DlEnrsRRnNi 193 (370)
T PF02994_consen 136 ENIDESLNSRIDELEERISELEDRIEEIEQAIKELEKRIKKLED-------KLDDLENRSRRNNI 193 (370)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHTTTEE
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHH-------HHHHHHhhccCCce
Confidence 33445677888888888888888888888887777777776665 47777777766543
No 195
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=31.82 E-value=4.6e+02 Score=24.97 Aligned_cols=159 Identities=19% Similarity=0.260 Sum_probs=0.0
Q ss_pred CchhhhhHHHHHHHHHHHHHHHHHHHh---------------hhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHH
Q 008522 332 KNSEVLTMKEKVKSLEEQLKESEIRLQ---------------NANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAE 396 (563)
Q Consensus 332 ~~SE~~sL~eKv~sLEeQLkese~Ql~---------------~akas~ea~~~~isdmEn~IedLK~kvskAESRAe~AE 396 (563)
++.++..++-+...|--+++..+.|+. +.+.....+..+|..=..-+..||.++.++=--..+.-
T Consensus 4 k~~~i~~~Rl~~~~lk~~l~k~~~ql~~ke~lge~L~~iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~k 83 (177)
T PF13870_consen 4 KRNEISKLRLKNITLKHQLAKLEEQLRQKEELGEGLHLIDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVK 83 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhhhhhhhHHHHHHHhhhhcCCCCcchhhhhhHHHHhhHHHHHHHhHhhhhhhHHHHHhHHHHHhhHHHHHHHHHHhh
Q 008522 397 EKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKV 476 (563)
Q Consensus 397 skc~lLteTN~EL~eEL~~Lks~~ss~~ek~~~LE~qLkese~QLqhA~As~eAs~eqQ~ml~sti~DME~vIedLksKv 476 (563)
.|...++..+..+..+|...... +..+...+.....+...+......-..+-+ +-.+-.|..|....+
T Consensus 84 eKl~~~~~~~~~l~~~l~~~~~~-------~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~-----~~~~P~ll~Dy~~~~ 151 (177)
T PF13870_consen 84 EKLHFLSEELERLKQELKDREEE-------LAKLREELYRVKKERDKLRKQNKKLRQQGG-----LLGVPALLRDYDKTK 151 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----CCCCcHHHHHHHHHH
Q ss_pred hhhhhhchhhhhhhcccccchhhhhhhhhhHHhHHHHHHHhHHH
Q 008522 477 SKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNR 520 (563)
Q Consensus 477 ~kaE~rae~~E~kc~~LsEtN~eLneELsflrsk~~~LE~sL~~ 520 (563)
...+ +|-..+.-++.+++.++..+.+
T Consensus 152 ~~~~------------------~l~~~i~~l~rk~~~l~~~i~~ 177 (177)
T PF13870_consen 152 EEVE------------------ELRKEIKELERKVEILEMRIKQ 177 (177)
T ss_pred HHHH------------------HHHHHHHHHHHHHHHHHHhhcC
No 196
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=31.09 E-value=8.1e+02 Score=27.64 Aligned_cols=15 Identities=20% Similarity=0.127 Sum_probs=6.3
Q ss_pred hhhhhhhHHHHHHHh
Q 008522 400 TQLTDTNLELSEEIN 414 (563)
Q Consensus 400 ~lLteTN~EL~eEL~ 414 (563)
+.+-.-|.++-+.++
T Consensus 150 i~~~~l~~~~~~~i~ 164 (420)
T COG4942 150 IYYGALNPARAERID 164 (420)
T ss_pred HHHHHhhHHHHHHHH
Confidence 334444444444333
No 197
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=31.01 E-value=5.5e+02 Score=25.64 Aligned_cols=124 Identities=18% Similarity=0.216 Sum_probs=73.1
Q ss_pred HHHHhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhcccchhch-hHHHHHHHhHHHHHhh
Q 008522 242 EQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRE-SELKSKLGDFIEQLKA 320 (563)
Q Consensus 242 eeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~RE-sel~sKL~~~~eqL~~ 320 (563)
.+|..+|..+....-........+..++.+..+..+-+....-+...+++.+...|++....- +.+..=.....
T Consensus 81 ~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L~~~~~~~~~~l~~a~~~~l----- 155 (240)
T PF12795_consen 81 EELEQRLSQEQAQLQELQEQLQQENSQLIEIQTRPERAQQQLSEARQRLQEIRNQLQNLPPNGESPLSEAQRWLL----- 155 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhccCCCCcchhhHHHHHHH-----
Confidence 344445545555555566677778888888999999999999999999999999999842222 22221111111
Q ss_pred hhHHHHHhhhcCchhhhhHHHHHHHHHHHHHHHHHHHhhhhhch-------hhhHHHHhhhHHHHHHHH
Q 008522 321 KDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACF-------QTSQEQLNEMDNFIESLK 382 (563)
Q Consensus 321 k~~~Lekl~~s~~SE~~sL~eKv~sLEeQLkese~Ql~~akas~-------ea~~~~isdmEn~IedLK 382 (563)
..|...|.-++.-|+..+........-++... ......+..+.+.|....
T Consensus 156 ------------~ae~~~l~~~~~~le~el~s~~~rq~L~~~qrdl~~~~~~~l~~~l~~Lq~~ln~~R 212 (240)
T PF12795_consen 156 ------------QAELAALEAQIEMLEQELLSNNNRQELLQLQRDLLKARIQRLQQQLQALQNLLNQKR 212 (240)
T ss_pred ------------HHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 24555555566666655555444433333333 333445555555555544
No 198
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=30.84 E-value=4.3e+02 Score=24.31 Aligned_cols=34 Identities=21% Similarity=0.217 Sum_probs=20.9
Q ss_pred HHHHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 008522 523 IEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVLIL 560 (563)
Q Consensus 523 ~~K~~TakdI~~~tK~i~dLv~qLa~ERErL~~Qissl 560 (563)
..|..--++|.--.+-+.||..|= .-||.||-++
T Consensus 98 ~qk~~le~e~~~~~~r~~dL~~QN----~lLh~QlE~l 131 (132)
T PF07926_consen 98 EQKEQLEKELSELEQRIEDLNEQN----KLLHDQLESL 131 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhc
Confidence 345555666666666666666554 3477777654
No 199
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=30.24 E-value=6.6e+02 Score=26.34 Aligned_cols=58 Identities=14% Similarity=0.155 Sum_probs=34.9
Q ss_pred HHHHHHHhHHHHHhhhhHHHHHhhhc-----CchhhhhHHHHHHHHHHHHHHHHHHHhhhhhc
Q 008522 306 ELKSKLGDFIEQLKAKDMVLQKLEST-----KNSEVLTMKEKVKSLEEQLKESEIRLQNANAC 363 (563)
Q Consensus 306 el~sKL~~~~eqL~~k~~~Lekl~~s-----~~SE~~sL~eKv~sLEeQLkese~Ql~~akas 363 (563)
-+...+.....+|..-+..|...... .+.+......-+..|+.|+.+.+.|+..+...
T Consensus 174 fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~~ 236 (362)
T TIGR01010 174 FAENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQLAQLRSI 236 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44555555555555555555555443 23345566677888888888888877765543
No 200
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=29.62 E-value=1.1e+03 Score=28.73 Aligned_cols=44 Identities=18% Similarity=0.138 Sum_probs=32.1
Q ss_pred HHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHhhhhhhhHHHHH
Q 008522 368 QEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSE 411 (563)
Q Consensus 368 ~~~isdmEn~IedLK~kvskAESRAe~AEskc~lLteTN~EL~e 411 (563)
++.|--|......-|+..++..++++--+++..-+-.||..+..
T Consensus 522 ~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~ 565 (961)
T KOG4673|consen 522 QETIEKHQAELTRQKDYYSNSRALAAALEAQALAEQATNDEARS 565 (961)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 34555666666667777777777777778888888888887776
No 201
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=28.82 E-value=1.5e+02 Score=25.60 Aligned_cols=41 Identities=12% Similarity=0.284 Sum_probs=29.6
Q ss_pred HHHHHHhhhhhh---hhHHhHHHHHHHHHhhhhcccceeccccc
Q 008522 95 ALVYDLLFGILD---SELREVERLLDTIHVEIVNVHHKISSCKH 135 (563)
Q Consensus 95 a~efDlL~gild---SEv~Ele~~~~~lq~~I~~~~~~~~s~~~ 135 (563)
+.-||+++.|-+ ...+.++.-++.|..-|.+|+.-|.+-..
T Consensus 6 P~i~~~l~~~~~d~~~~~kd~~~~~~~lk~Klq~ar~~i~~lpg 49 (83)
T PF07544_consen 6 PLIFDILHQISKDPPLSSKDLDTATGSLKHKLQKARAAIRELPG 49 (83)
T ss_pred chHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 455788877765 36788888888888888888776555444
No 202
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=28.58 E-value=4.9e+02 Score=27.53 Aligned_cols=114 Identities=24% Similarity=0.295 Sum_probs=82.7
Q ss_pred Hhhhhhh-hHHHhhHHHhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhcccc
Q 008522 222 KSLAREL-DLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGS 300 (563)
Q Consensus 222 kSlA~El-dLEkkL~~s~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as 300 (563)
++||+|+ +....|.+.=..|-+++......-. |-++-.-.-..++...+.+...++.++-.|+..
T Consensus 123 R~Laseit~~GA~LydlL~kE~~lr~~R~~a~~--------------r~~e~~~iE~~l~~ai~~~~~~~~~~~~~l~~l 188 (267)
T PF10234_consen 123 RQLASEITQRGASLYDLLGKEVELREERQRALA--------------RPLELNEIEKALKEAIKAVQQQLQQTQQQLNNL 188 (267)
T ss_pred HHHHHHHHHHHHHHHHHHhchHhHHHHHHHHHc--------------CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578876 5677888877766666655433222 555555556678888899999999999999999
Q ss_pred hhchhHHHHHHHhHHHHHhhhhHHHHHhhhcCchhhhhHHHHHHHHHHHHHHH
Q 008522 301 LQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKES 353 (563)
Q Consensus 301 ~~REsel~sKL~~~~eqL~~k~~~Lekl~~s~~SE~~sL~eKv~sLEeQLkes 353 (563)
...|..|-.|++.-.-.|+.-..-|+.|.+-++ .-.+-...||..|+..
T Consensus 189 ~~de~~Le~KIekkk~ELER~qKRL~sLq~vRP----AfmdEyEklE~EL~~l 237 (267)
T PF10234_consen 189 ASDEANLEAKIEKKKQELERNQKRLQSLQSVRP----AFMDEYEKLEEELQKL 237 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh----HHHHHHHHHHHHHHHH
Confidence 999999999998888888877777888877744 3444444555555543
No 203
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=28.48 E-value=1.6e+02 Score=26.25 Aligned_cols=60 Identities=20% Similarity=0.308 Sum_probs=51.4
Q ss_pred hhhhhhh-HHHhhHHHhhhHHHHHhhhhhh---hHHHHHHHHHHHHHHHHHHhccchHHHHhhh
Q 008522 223 SLARELD-LEKKISELNQNEEQLKLKLHHT---EQVAFRMEEAAEVVWGRFLEAENSAEVLMGI 282 (563)
Q Consensus 223 SlA~Eld-LEkkL~~s~~~eeeLk~kL~~~---eqe~~~lEE~~~~~~er~~EAENa~EvL~g~ 282 (563)
|+|.|+| +|.++..-+..-+...-||+.. .+...-||+....+.+++-.-|+-...|++.
T Consensus 2 ~V~~eId~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~LrkE 65 (85)
T PF15188_consen 2 SVAKEIDGLEEKLAQCRRRLEAVESRLRRRELSPEARRSLEKELNELKEKLENNEKELKLLRKE 65 (85)
T ss_pred cHHHHHhhHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhccHHHHHHHHHh
Confidence 5788886 9999999999888888888764 4568899999999999999999999888874
No 204
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=28.22 E-value=5.5e+02 Score=24.73 Aligned_cols=100 Identities=16% Similarity=0.191 Sum_probs=62.0
Q ss_pred HHhhHHHHHHHHHHhhhhhhhhchhhhh-hhcccccchhhhhhhhhhHHhHHHHHHHhHHH-----HHHHHHhhHHHHHH
Q 008522 461 AIWDMETLIEDLKSKVSKAESKTESVEE-QCIVLSEDNFELKNKQSFMRDKIKILESSLNR-----ANIEKAASAKEVNH 534 (563)
Q Consensus 461 ti~DME~vIedLksKv~kaE~rae~~E~-kc~~LsEtN~eLneELsflrsk~~~LE~sL~~-----A~~~K~~TakdI~~ 534 (563)
+=.|+|+..-.+++.+++..+.....+. ...-|...+-.|..|+.-++.++..==.++.. .|.+|...-.+...
T Consensus 45 tk~d~e~~~~~~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~~~L~~ei~~l~a~~klD~n~eK~~~r~e~~~ 124 (177)
T PF07798_consen 45 TKSDLENQEYLFKAAIAELRSELQNSRKSEFAELRSENEKLQREIEKLRQELREEINKLRAEVKLDLNLEKGRIREEQAK 124 (177)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 4567777777777777777766544432 23345555666666666666666531122221 34456665556666
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHh
Q 008522 535 RTKLMMEMVMQLATQRELIQKQVLIL 560 (563)
Q Consensus 535 ~tK~i~dLv~qLa~ERErL~~Qissl 560 (563)
...-|.++-.++..|...|..+|-++
T Consensus 125 ~~~ki~e~~~ki~~ei~~lr~~iE~~ 150 (177)
T PF07798_consen 125 QELKIQELNNKIDTEIANLRTEIESL 150 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66667888888888888888887654
No 205
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=27.98 E-value=2.2e+02 Score=25.31 Aligned_cols=52 Identities=21% Similarity=0.211 Sum_probs=41.6
Q ss_pred HHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHhhhhhhhHHHHHHHhhhhcC
Q 008522 368 QEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGN 419 (563)
Q Consensus 368 ~~~isdmEn~IedLK~kvskAESRAe~AEskc~lLteTN~EL~eEL~~Lks~ 419 (563)
...|.=+.=-|++||++-......++.+-+--.-|...|.+|+.|-+.-.++
T Consensus 17 vdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~Wqer 68 (79)
T PRK15422 17 IDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQER 68 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3455656666999999988888888888888888999999999987776664
No 206
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=27.84 E-value=5.9e+02 Score=24.94 Aligned_cols=52 Identities=23% Similarity=0.255 Sum_probs=37.9
Q ss_pred hhhhhhHHHHhhHHHHHHHhHhhhhhhHHHHHhHHHHHhhHHHHHHHHHHhh
Q 008522 425 KKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKV 476 (563)
Q Consensus 425 ek~~~LE~qLkese~QLqhA~As~eAs~eqQ~ml~sti~DME~vIedLksKv 476 (563)
.|-+-||++|+....-++.|---+.-..-=-+.|-+-+.++...|++++.|-
T Consensus 105 ~rRD~LErrl~~l~~tierAE~l~sqi~vvl~yL~~dl~~v~~~~e~~~~~q 156 (159)
T PF05384_consen 105 ERRDELERRLRNLEETIERAENLVSQIGVVLNYLSGDLQQVSEQIEDAQQKQ 156 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 4578899999988888887775554443334456667888889999988763
No 207
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=27.68 E-value=4.3e+02 Score=23.32 Aligned_cols=44 Identities=20% Similarity=0.342 Sum_probs=32.3
Q ss_pred hhhHHHHHHHHHHHHhhhhhhhhHHHHHhhhhhhhHHHHHHHhh
Q 008522 372 NEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINF 415 (563)
Q Consensus 372 sdmEn~IedLK~kvskAESRAe~AEskc~lLteTN~EL~eEL~~ 415 (563)
++++.-|..|...-++=.-+-++++++|.-|.++|-+++..|+.
T Consensus 35 ~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~ 78 (89)
T PF13747_consen 35 DELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDS 78 (89)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555666666666667778888899999999999988764
No 208
>COG3524 KpsE Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=27.62 E-value=3.4e+02 Score=29.79 Aligned_cols=106 Identities=19% Similarity=0.161 Sum_probs=75.3
Q ss_pred HHhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhcccchhchhHHHHHHHhHH
Q 008522 236 ELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFI 315 (563)
Q Consensus 236 ~s~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~sKL~~~~ 315 (563)
.+....-+|.++- -.+..-|-|+++...-+|.-+|-|.+--.+. ..=.||+.+-..----|-++|+.-+
T Consensus 164 qse~lIN~Ls~rA--r~dt~r~Ae~eV~~~eerv~kAs~~L~~yr~---------kngvfdp~~qaevq~~Lvs~Le~eL 232 (372)
T COG3524 164 QSEKLINQLSERA--RRDTVRFAEEEVQKAEERVKKASNDLTDYRI---------KNGVFDPKAQAEVQMSLVSKLEDEL 232 (372)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh---------hcCccChhhhhHHHHHHHHHHHHHH
Confidence 3344444444442 3455677888888888999998887654443 3335677666555567888998888
Q ss_pred HHHhhhhHHHHHhhhcCchhhhhHHHHHHHHHHHHHH
Q 008522 316 EQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKE 352 (563)
Q Consensus 316 eqL~~k~~~Lekl~~s~~SE~~sL~eKv~sLEeQLke 352 (563)
-++.++=..++......+|++..|.-.+.+|++||.-
T Consensus 233 ~~iqaqL~tvks~m~~~nPqi~~LkarieSlrkql~q 269 (372)
T COG3524 233 IVIQAQLDTVKSVMNPENPQIPGLKARIESLRKQLLQ 269 (372)
T ss_pred HHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHH
Confidence 8888776666666644689999999999999999864
No 209
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=27.43 E-value=6.4e+02 Score=25.27 Aligned_cols=89 Identities=26% Similarity=0.387 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHhhhhhhhHHHHHHHhhhhcCCCC
Q 008522 343 VKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDS 422 (563)
Q Consensus 343 v~sLEeQLkese~Ql~~akas~ea~~~~isdmEn~IedLK~kvskAESRAe~AEskc~lLteTN~EL~eEL~~Lks~~ss 422 (563)
|..--..|..++.-...+.........++..|...++..+..+..++..+..+-. +|.+.-..|-.
T Consensus 83 V~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a~~~a~~AQ~----------el~eK~qLLea---- 148 (188)
T PF05335_consen 83 VQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQANLANAEQVAEGAQQ----------ELAEKTQLLEA---- 148 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHH----
Confidence 3333344444444444555555556678889999999999999999988877643 34444222222
Q ss_pred cchhhhhhHHHHhhHHHHHHHhH
Q 008522 423 NTKKVGILENQLRDLEIQLQQAK 445 (563)
Q Consensus 423 ~~ek~~~LE~qLkese~QLqhA~ 445 (563)
--.|++.|.++|.....-++..+
T Consensus 149 Ak~Rve~L~~QL~~Ar~D~~~tk 171 (188)
T PF05335_consen 149 AKRRVEELQRQLQAARADYEKTK 171 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 12468888888887776666655
No 210
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=27.22 E-value=1.3e+02 Score=34.12 Aligned_cols=46 Identities=15% Similarity=0.178 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHH
Q 008522 340 KEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESL 385 (563)
Q Consensus 340 ~eKv~sLEeQLkese~Ql~~akas~ea~~~~isdmEn~IedLK~kv 385 (563)
+.|+..||+||......++-..+.....+.+|.+++..|..|+.++
T Consensus 75 Q~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 75 QVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 4477777777777655555444444455667777777777777776
No 211
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=27.18 E-value=1e+03 Score=27.59 Aligned_cols=88 Identities=25% Similarity=0.294 Sum_probs=59.7
Q ss_pred hHHHHHHHHHHhhhhhhhhchhhhhhhcccccchh-------hhhhhhhhHHhHHHHHHHhHHHHHHHHHhhHHHHHHHh
Q 008522 464 DMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNF-------ELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRT 536 (563)
Q Consensus 464 DME~vIedLksKv~kaE~rae~~E~kc~~LsEtN~-------eLneELsflrsk~~~LE~sL~~A~~~K~~TakdI~~~t 536 (563)
+-..=|++|-++...+++++-++...|-.|...=. .+.+||....+++..||.-|... +...-.+|..-+
T Consensus 417 ~Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TT---r~NYE~QLs~MS 493 (518)
T PF10212_consen 417 YYMSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETT---RRNYEEQLSMMS 493 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhHHHHHHHHH
Confidence 34577889999999999999999999987765422 34455555555555555444432 333456677777
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 008522 537 KLMMEMVMQLATQRELIQ 554 (563)
Q Consensus 537 K~i~dLv~qLa~ERErL~ 554 (563)
.-+-.|.-||+..++.++
T Consensus 494 EHLasmNeqL~~Q~eeI~ 511 (518)
T PF10212_consen 494 EHLASMNEQLAKQREEIQ 511 (518)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777778888887777765
No 212
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=26.75 E-value=9e+02 Score=30.79 Aligned_cols=148 Identities=21% Similarity=0.302 Sum_probs=0.0
Q ss_pred hHHHHHhhhhHHHHHhhhc--------------------CchhhhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHh
Q 008522 313 DFIEQLKAKDMVLQKLEST--------------------KNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLN 372 (563)
Q Consensus 313 ~~~eqL~~k~~~Lekl~~s--------------------~~SE~~sL~eKv~sLEeQLkese~Ql~~akas~ea~~~~is 372 (563)
+++.|+..++..|+-|.++ ++.|..+ ==++...|+++++-..+..|..+.
T Consensus 1018 DaIKqmIekKv~L~~L~qCqdALeKqnIa~AL~ALn~IPSdKEms~----------Is~eLReQIq~~KQ~LesLQRAV~ 1087 (1439)
T PF12252_consen 1018 DAIKQMIEKKVVLQALTQCQDALEKQNIAGALQALNNIPSDKEMSK----------ISSELREQIQSVKQDLESLQRAVV 1087 (1439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCchhhhhh----------hhHHHHHHHHHHHHHHHHHHHhhc
Q ss_pred ------------hhHHHHHHHHHHHHhhhhhhhhHHHHHhhhhhhhHHHHHHHhhhhcC-------------CCCcchhh
Q 008522 373 ------------EMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGN-------------NDSNTKKV 427 (563)
Q Consensus 373 ------------dmEn~IedLK~kvskAESRAe~AEskc~lLteTN~EL~eEL~~Lks~-------------~ss~~ek~ 427 (563)
.++.+|.++..+|..-|.-..---+..+---.-=.-|.+||..||.- ++ +
T Consensus 1088 TPVvtd~eKvr~rYe~LI~~iTKrIt~LEk~k~~~l~~ikK~ia~lnnlqqElklLRnEK~Rmh~~~dkVDFSD-----I 1162 (1439)
T PF12252_consen 1088 TPVVTDAEKVRVRYETLITDITKRITDLEKAKLDNLDSIKKAIANLNNLQQELKLLRNEKIRMHSGTDKVDFSD-----I 1162 (1439)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHhHHHhhccCCCcccHHH-----H
Q ss_pred hhhHHHHhhHHHHHHHhHhhhhhhHHHHHhHHHHHhhHHHHHH-------HHHHhhhhhhhhchhhh
Q 008522 428 GILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIE-------DLKSKVSKAESKTESVE 487 (563)
Q Consensus 428 ~~LE~qLkese~QLqhA~As~eAs~eqQ~ml~sti~DME~vIe-------dLksKv~kaE~rae~~E 487 (563)
+.||+||+..+.-|--| .|.+..+++-.+-+ |+|++.+++=.+....|
T Consensus 1163 EkLE~qLq~~~~kL~dA------------yl~eitKqIsaLe~e~PKnltdvK~missf~d~laeiE 1217 (1439)
T PF12252_consen 1163 EKLEKQLQVIHTKLYDA------------YLVEITKQISALEKEKPKNLTDVKSMISSFNDRLAEIE 1217 (1439)
T ss_pred HHHHHHHHHhhhhhHHH------------HHHHHHHHHHHHHhhCCCchhhHHHHHHHHHhhhhHHH
No 213
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=26.71 E-value=4.9e+02 Score=25.00 Aligned_cols=74 Identities=19% Similarity=0.271 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHhhhhhhhHHHHHHHhhhh
Q 008522 338 TMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLK 417 (563)
Q Consensus 338 sL~eKv~sLEeQLkese~Ql~~akas~ea~~~~isdmEn~IedLK~kvskAESRAe~AEskc~lLteTN~EL~eEL~~Lk 417 (563)
.+.+.+..|..||.+.+-|+...+.+. .-..++..-|++|+.++..|....+.-...... |..++..|...+
T Consensus 24 ~~~~e~~~~k~ql~~~d~~i~~Lk~~~----~d~eeLk~~i~~lq~~~~~~~~~~e~~l~~~~~----~~ai~~al~~ak 95 (155)
T PF06810_consen 24 KVKEERDNLKTQLKEADKQIKDLKKSA----KDNEELKKQIEELQAKNKTAKEEYEAKLAQMKK----DSAIKSALKGAK 95 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHcC
Confidence 333444444444444444443333311 123344444555555554443333332222222 555666555555
Q ss_pred cC
Q 008522 418 GN 419 (563)
Q Consensus 418 s~ 419 (563)
.+
T Consensus 96 ak 97 (155)
T PF06810_consen 96 AK 97 (155)
T ss_pred CC
Confidence 54
No 214
>PF03310 Cauli_DNA-bind: Caulimovirus DNA-binding protein; InterPro: IPR004986 The gene III product (P15) of cauliflower mosaic virus (CaMV) is a DNA binding protein in which the DNA binding activity is located on its C-terminal part. A family of related proteins is expressed by other members of the Caulimoviridae.; GO: 0003677 DNA binding; PDB: 3F6N_A 3K4T_D.
Probab=26.71 E-value=1e+02 Score=29.21 Aligned_cols=17 Identities=12% Similarity=0.149 Sum_probs=0.0
Q ss_pred hHhhhhhhhhcccCCCccc
Q 008522 171 SAKFQRVLSYFIHGNNDEA 189 (563)
Q Consensus 171 sa~f~r~~~~~~~~~~~~~ 189 (563)
..+|++ -+|.||++||.
T Consensus 85 ~~~~~k--YSyPN~~VGne 101 (121)
T PF03310_consen 85 GSSLQK--YSYPNWNVGNE 101 (121)
T ss_dssp -------------------
T ss_pred CCCCcc--cCCCCCCCCch
Confidence 478888 34679999885
No 215
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=26.57 E-value=2.4e+02 Score=26.35 Aligned_cols=21 Identities=24% Similarity=0.207 Sum_probs=15.9
Q ss_pred hHHHHhhhHHHHHHHHHHHHh
Q 008522 367 SQEQLNEMDNFIESLKESLYG 387 (563)
Q Consensus 367 ~~~~isdmEn~IedLK~kvsk 387 (563)
.+..++.|+..|++.|-....
T Consensus 14 l~n~La~Le~slE~~K~S~~e 34 (107)
T PF09304_consen 14 LQNRLASLERSLEDEKTSQGE 34 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHH
Confidence 455888999999988876543
No 216
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=25.46 E-value=6.9e+02 Score=29.17 Aligned_cols=96 Identities=17% Similarity=0.172 Sum_probs=44.0
Q ss_pred hhhhHHHHhhHHHHHHHhHhhhhhhHHHHHhHHHHHhhHHHHHHHHHHhhhhhhhhchhhhhhhcccccchhhhhhhhhh
Q 008522 427 VGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSF 506 (563)
Q Consensus 427 ~~~LE~qLkese~QLqhA~As~eAs~eqQ~ml~sti~DME~vIedLksKv~kaE~rae~~E~kc~~LsEtN~eLneELsf 506 (563)
++.++++|+..+.|.---.--..--..+-+-.|.-+..+.+.|-|++.|..-..-+.+-.-.--+.-.+.--.+.-|+.-
T Consensus 200 y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~E 279 (596)
T KOG4360|consen 200 YGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEE 279 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 66777888877654322110001111222333556777777777777765533322222212222233344444444444
Q ss_pred HHhHHHHHHHhHHHHH
Q 008522 507 MRDKIKILESSLNRAN 522 (563)
Q Consensus 507 lrsk~~~LE~sL~~A~ 522 (563)
+..|--....-+|.|.
T Consensus 280 leDkyAE~m~~~~Eae 295 (596)
T KOG4360|consen 280 LEDKYAECMQMLHEAE 295 (596)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444433334444443
No 217
>PF00846 Hanta_nucleocap: Hantavirus nucleocapsid protein; InterPro: IPR002214 Hantaviruses are ssRNA negative-strand viruses. The nucleocapsid protein is an internal protein of the virus particle [, ].; GO: 0019013 viral nucleocapsid; PDB: 2IC9_A 2IC6_A 2K48_A 4FI5_A.
Probab=25.17 E-value=1.6e+02 Score=32.85 Aligned_cols=68 Identities=21% Similarity=0.224 Sum_probs=47.1
Q ss_pred hhhhHHHHhhhhHHhhhcccchhchhHHHHHHHhHHHHHhhhhH--HHHHhhhcCchhhhhHHHHHHHHHHHHHHHHH
Q 008522 280 MGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDM--VLQKLESTKNSEVLTMKEKVKSLEEQLKESEI 355 (563)
Q Consensus 280 ~g~skel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~--~Lekl~~s~~SE~~sL~eKv~sLEeQLkese~ 355 (563)
|+..++++.-+...+..|.-+ +-||++++++-+.--. ....+.. +..+|.++++|+..|.+||.+.-.
T Consensus 1 m~~~~elq~e~~~~E~qL~~a-------~qkl~da~~~~e~dpD~~nk~~~~~-R~~~v~~~~~Ki~elkr~lAd~v~ 70 (428)
T PF00846_consen 1 MSTLEELQEEITQHEQQLVIA-------RQKLKDAEKQYEKDPDDVNKSTLQQ-RQSVVSALQDKIAELKRQLADRVA 70 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH---HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhcCCChHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456677777766666666544 5689999998886432 2333333 578999999999999999988543
No 218
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=24.90 E-value=6.3e+02 Score=29.94 Aligned_cols=69 Identities=22% Similarity=0.336 Sum_probs=45.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhhhhchhhh---HHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHhhh
Q 008522 334 SEVLTMKEKVKSLEEQLKESEIRLQNANACFQTS---QEQLNEMDNFIESLKESLYGAESRAESAEEKVTQL 402 (563)
Q Consensus 334 SE~~sL~eKv~sLEeQLkese~Ql~~akas~ea~---~~~isdmEn~IedLK~kvskAESRAe~AEskc~lL 402 (563)
.|...|..++..+.+.+-.++.++..++.+.... .-++..+++-|+.|..++.+..++.+.-+.+...|
T Consensus 436 ~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l 507 (652)
T COG2433 436 EENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAEL 507 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666666666666666666666555421 12677788888888888888877777665555443
No 219
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=24.79 E-value=4.6e+02 Score=26.92 Aligned_cols=45 Identities=18% Similarity=0.273 Sum_probs=30.2
Q ss_pred HhHHHHHHHHHhhHHHH---HHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 008522 516 SSLNRANIEKAASAKEV---NHRTKLMMEMVMQLATQRELIQKQVLIL 560 (563)
Q Consensus 516 ~sL~~A~~~K~~TakdI---~~~tK~i~dLv~qLa~ERErL~~Qissl 560 (563)
+-......+|++-+++| ..-...+++++.|.-.||++....|.-+
T Consensus 39 kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~ 86 (230)
T PF10146_consen 39 KEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRL 86 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444456666666554 5556778888888888888887777544
No 220
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=24.74 E-value=7.7e+02 Score=25.26 Aligned_cols=164 Identities=23% Similarity=0.220 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHhhhhhhhHHHHHHHhhhhcCC
Q 008522 341 EKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNN 420 (563)
Q Consensus 341 eKv~sLEeQLkese~Ql~~akas~ea~~~~isdmEn~IedLK~kvskAESRAe~AEskc~lLteTN~EL~eEL~~Lks~~ 420 (563)
+.-+.|+.-+++-+.++..++-.+........-++.=.+++...+-+=+++|..|..+- |-.|-.+.
T Consensus 24 Dp~~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g------~E~LAr~a------- 90 (225)
T COG1842 24 DPEKMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAG------NEDLAREA------- 90 (225)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------CHHHHHHH-------
Confidence 33456666777777777777766655555566666667777777777777777664432 22222221
Q ss_pred CCcchhhhhhHHHHhhHHHHHHHhHhhhhhhHHHHHhHHHHHhhHHHHHHHHHHhhhhhhhhchhhhhhhcccccchhhh
Q 008522 421 DSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFEL 500 (563)
Q Consensus 421 ss~~ek~~~LE~qLkese~QLqhA~As~eAs~eqQ~ml~sti~DME~vIedLksKv~kaE~rae~~E~kc~~LsEtN~eL 500 (563)
-.+.-.||.++...+.+++.+...++.-..+-.-|..+|.++..-..-++....-++.. +.+..-....+. ..=
T Consensus 91 ---l~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~~akA~-~~v~~~~~~~s~--~sa 164 (225)
T COG1842 91 ---LEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARKAAAKAQ-EKVNRSLGGGSS--SSA 164 (225)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCc--hhh
Confidence 24566788888888888887777776655433334444444444444444333322222 222233333332 122
Q ss_pred hhhhhhHHhHHHHHHHhHHHHHH
Q 008522 501 KNKQSFMRDKIKILESSLNRANI 523 (563)
Q Consensus 501 neELsflrsk~~~LE~sL~~A~~ 523 (563)
...+.-.+.|+...|.....+.+
T Consensus 165 ~~~fer~e~kiee~ea~a~~~~e 187 (225)
T COG1842 165 MAAFERMEEKIEEREARAEAAAE 187 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHH
Confidence 23455667777777766666554
No 221
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=24.53 E-value=1.5e+02 Score=27.49 Aligned_cols=52 Identities=21% Similarity=0.325 Sum_probs=42.5
Q ss_pred hHHHHHhhHHHHHHHHHHhhhhhhhhchhhhhhhcccccchhhhhhhhhhHHhHHHHHH
Q 008522 457 MLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILE 515 (563)
Q Consensus 457 ml~sti~DME~vIedLksKv~kaE~rae~~E~kc~~LsEtN~eLneELsflrsk~~~LE 515 (563)
-+|.++..||.-|..+-..+...... ..-|-|.|..|.-|-.-||.|+..++
T Consensus 5 elfd~l~~le~~l~~l~~el~~LK~~-------~~el~EEN~~L~iEN~~Lr~~l~~~~ 56 (110)
T PRK13169 5 EIFDALDDLEQNLGVLLKELGALKKQ-------LAELLEENTALRLENDKLRERLEELE 56 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 37888888888888887777766555 77788999999999999999999763
No 222
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=24.52 E-value=8.9e+02 Score=25.95 Aligned_cols=58 Identities=28% Similarity=0.350 Sum_probs=36.5
Q ss_pred hHHHHHHHHHHHHhhhhhhhhHHHHHhhhhhhhHHHHHHHhhhhcCCCCcchhhhhhHHHHhhHH
Q 008522 374 MDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLE 438 (563)
Q Consensus 374 mEn~IedLK~kvskAESRAe~AEskc~lLteTN~EL~eEL~~Lks~~ss~~ek~~~LE~qLkese 438 (563)
=++.+.+||..+..-|.|--.|=.-+.+|---...|-=++..||+ ++.-+|..+-++.
T Consensus 75 se~s~r~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd-------~lee~eE~~~~~~ 132 (302)
T PF09738_consen 75 SEASLRDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKD-------KLEELEETLAQLQ 132 (302)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 344677888888888777777666555555555555555666666 3666666655443
No 223
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=23.97 E-value=1.6e+03 Score=28.56 Aligned_cols=134 Identities=13% Similarity=0.203 Sum_probs=76.1
Q ss_pred HhhhhHHHHhhhhHHhhhcccchhchhHHHHHHHhHHHHHhhhhHHHHHhhhc----C------chhhhhHHHHHHHHHH
Q 008522 279 LMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLEST----K------NSEVLTMKEKVKSLEE 348 (563)
Q Consensus 279 L~g~skel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~Lekl~~s----~------~SE~~sL~eKv~sLEe 348 (563)
.-.+.++..+.|.-+.-+-+.+..+=...++.+....+....-++.+-.|+.+ . +.+-.....|---||=
T Consensus 228 YdrEl~E~~~~l~~le~~r~~~~e~s~~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel 307 (1200)
T KOG0964|consen 228 YDRELNEINGELERLEEDRSSAPEESEQYIDALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLEL 307 (1200)
T ss_pred hhhHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 34567888888888888877777776666666666665555444444444332 0 0000011111222232
Q ss_pred HHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHhhhhhhhHHHHHHHhhhhcC
Q 008522 349 QLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGN 419 (563)
Q Consensus 349 QLkese~Ql~~akas~ea~~~~isdmEn~IedLK~kvskAESRAe~AEskc~lLteTN~EL~eEL~~Lks~ 419 (563)
++++..-|++. ..++-+...++...+++++.+-+.....-+-+..-|+++-..++.-|..|+.+
T Consensus 308 ~~kdlq~~i~~-------n~q~r~~~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~ 371 (1200)
T KOG0964|consen 308 KIKDLQDQITG-------NEQQRNLALHVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQK 371 (1200)
T ss_pred hhHHHHHHhhh-------hhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHH
Confidence 33332222221 11122345566777777777777777777777777888877888777777763
No 224
>PRK04325 hypothetical protein; Provisional
Probab=23.93 E-value=1e+02 Score=26.27 Aligned_cols=57 Identities=12% Similarity=0.170 Sum_probs=0.0
Q ss_pred HHhhHHHHHHHHHHhhhhhhhhchhhhhhhcccccchhhhhhhhhhHHhHHHHHHHh
Q 008522 461 AIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESS 517 (563)
Q Consensus 461 ti~DME~vIedLksKv~kaE~rae~~E~kc~~LsEtN~eLneELsflrsk~~~LE~s 517 (563)
.+.+|+.=|++|..|+++-|.-.+.+-+-.+--...-..|...|..|..|+.+++..
T Consensus 3 ~~~~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~~~ 59 (74)
T PRK04325 3 AVQEMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDANPD 59 (74)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
No 225
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=23.79 E-value=5.1e+02 Score=22.90 Aligned_cols=66 Identities=17% Similarity=0.246 Sum_probs=45.6
Q ss_pred HHhHHHHHhhHHHHHHHHHHhhhhhhhhchhhhhhhcccccchhhhhhhhhhHHhHHHHHHHhHHH
Q 008522 455 QSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNR 520 (563)
Q Consensus 455 Q~ml~sti~DME~vIedLksKv~kaE~rae~~E~kc~~LsEtN~eLneELsflrsk~~~LE~sL~~ 520 (563)
+..|...+--....|.+-..|...|..+|+.....+.-....=..|..+|+.++++...++..+..
T Consensus 41 e~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~ 106 (126)
T PF13863_consen 41 EQELEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEEKLEE 106 (126)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555566677888888899999998877777666666555566666666666666666655543
No 226
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=23.63 E-value=6.2e+02 Score=26.87 Aligned_cols=40 Identities=20% Similarity=0.245 Sum_probs=23.8
Q ss_pred HHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHhhhhhhhH
Q 008522 368 QEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNL 407 (563)
Q Consensus 368 ~~~isdmEn~IedLK~kvskAESRAe~AEskc~lLteTN~ 407 (563)
-...+.+....-.+.+.......+-+.+..+...|..||+
T Consensus 98 ~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~ktNv 137 (314)
T PF04111_consen 98 WREYNELQLELIEFQEERDSLKNQYEYASNQLDRLRKTNV 137 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT--T
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 3344555555555666666666666777777777777775
No 227
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=23.47 E-value=1.2e+03 Score=26.91 Aligned_cols=218 Identities=19% Similarity=0.191 Sum_probs=0.0
Q ss_pred HHHHhHHHHHhhhhHHHHHhhhcCchhhhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhh
Q 008522 309 SKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGA 388 (563)
Q Consensus 309 sKL~~~~eqL~~k~~~Lekl~~s~~SE~~sL~eKv~sLEeQLkese~Ql~~akas~ea~~~~isdmEn~IedLK~kvskA 388 (563)
.+|+.-.-+|+.-...-...++.-..|+..|..++.-||+|+|+.+.....+-+.-+.-+.+| +=.+--.|
T Consensus 225 ~flerkv~eledd~~~~gd~~SrlkqEnlqLvhR~h~LEEq~reqElraeE~l~Ee~rrhrEi---------l~k~eRea 295 (502)
T KOG0982|consen 225 RFLERKVQELEDDQNIAGDRSSRLKQENLQLVHRYHMLEEQRREQELRAEESLSEEERRHREI---------LIKKEREA 295 (502)
T ss_pred HHHHHHHHHhhcchhccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH---------HHHHHHHH
Q ss_pred hhhhhhHHHHHhhhhhhhHHHHHHHhhhhcCCCCcchhhhhhHHHHhhHHHHHHHhHhhhhhhHHHHHhHHHHHhhHH--
Q 008522 389 ESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDME-- 466 (563)
Q Consensus 389 ESRAe~AEskc~lLteTN~EL~eEL~~Lks~~ss~~ek~~~LE~qLkese~QLqhA~As~eAs~eqQ~ml~sti~DME-- 466 (563)
.--.++-..+.-+|.+.|-+|...+..||+. ..-|+.-...+.-+|+-+.--..-.|.----..-.++...
T Consensus 296 sle~Enlqmr~qqleeentelRs~~arlksl-------~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrrfq~e 368 (502)
T KOG0982|consen 296 SLEKENLQMRDQQLEEENTELRSLIARLKSL-------ADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILRRFQEE 368 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred -----HHHHHHHHhhhhhhhhchhhh----------------------hhhcccccchhhhhhhhhhHHhHHHHHHHhHH
Q 008522 467 -----TLIEDLKSKVSKAESKTESVE----------------------EQCIVLSEDNFELKNKQSFMRDKIKILESSLN 519 (563)
Q Consensus 467 -----~vIedLksKv~kaE~rae~~E----------------------~kc~~LsEtN~eLneELsflrsk~~~LE~sL~ 519 (563)
-+|+||.-.+.+++-+.--++ .+--+|.+-|-+||--+.-+---.- ..+|
T Consensus 369 keatqELieelrkelehlr~~kl~~a~p~rgrsSaRe~eleqevkrLrq~nr~l~eqneelngtilTls~q~l---kn~h 445 (502)
T KOG0982|consen 369 KEATQELIEELRKELEHLRRRKLVLANPVRGRSSAREIELEQEVKRLRQPNRILSEQNEELNGTILTLSTQFL---KNWH 445 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccccCchhHHHHHHHHHHHHhccccchhhhhhhhhhhhhhhHHHHHH---HHHH
Q ss_pred HHHHHHHhhHHHHH--HHhHHHHHHHHH
Q 008522 520 RANIEKAASAKEVN--HRTKLMMEMVMQ 545 (563)
Q Consensus 520 ~A~~~K~~TakdI~--~~tK~i~dLv~q 545 (563)
.++..=.+-|-+|. .+..++.-+--|
T Consensus 446 a~~~~~~Slaaeid~~sqdeLmqafqeq 473 (502)
T KOG0982|consen 446 ATFSLFFSLAAEIDEMSQDELMQAFQEQ 473 (502)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHH
No 228
>PRK04406 hypothetical protein; Provisional
Probab=23.38 E-value=1.9e+02 Score=24.82 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=16.0
Q ss_pred HHHhhHHHHHHHHHHhhhhhhhh
Q 008522 460 SAIWDMETLIEDLKSKVSKAESK 482 (563)
Q Consensus 460 sti~DME~vIedLksKv~kaE~r 482 (563)
.|+.+|+.=|.+|..|+++.|.-
T Consensus 4 ~~~~~le~Ri~~LE~~lAfQE~t 26 (75)
T PRK04406 4 KTIEQLEERINDLECQLAFQEQT 26 (75)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 35666777777777777777744
No 229
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=23.33 E-value=3.1e+02 Score=25.96 Aligned_cols=61 Identities=23% Similarity=0.318 Sum_probs=25.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHH--HHhhhHHHHHHHHHHHHhhhhhhhhH
Q 008522 335 EVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQE--QLNEMDNFIESLKESLYGAESRAESA 395 (563)
Q Consensus 335 E~~sL~eKv~sLEeQLkese~Ql~~akas~ea~~~--~isdmEn~IedLK~kvskAESRAe~A 395 (563)
|...+...+..|.+++++.........+....... ...+|...|..|+..+..-++|....
T Consensus 73 el~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l 135 (169)
T PF07106_consen 73 ELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKL 135 (169)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443333333222222 12244444555555555555444443
No 230
>PRK02119 hypothetical protein; Provisional
Probab=23.30 E-value=1.2e+02 Score=25.84 Aligned_cols=56 Identities=20% Similarity=0.224 Sum_probs=0.0
Q ss_pred HhhHHHHHHHHHHhhhhhhhhchhhhhhhcccccchhhhhhhhhhHHhHHHHHHHh
Q 008522 462 IWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESS 517 (563)
Q Consensus 462 i~DME~vIedLksKv~kaE~rae~~E~kc~~LsEtN~eLneELsflrsk~~~LE~s 517 (563)
+.+|+.=|.+|..|+++.|.-.+.+-+-.+--...-..|...|..|+.|+.+++..
T Consensus 4 ~~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~~~ 59 (73)
T PRK02119 4 QQNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQPS 59 (73)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
No 231
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=23.26 E-value=1.5e+02 Score=24.71 Aligned_cols=18 Identities=33% Similarity=0.457 Sum_probs=11.4
Q ss_pred HHHHHHHHHHhhhhhhhh
Q 008522 465 METLIEDLKSKVSKAESK 482 (563)
Q Consensus 465 ME~vIedLksKv~kaE~r 482 (563)
|+.=|++|.+|+++.+.-
T Consensus 2 le~Ri~~LE~~la~qe~~ 19 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDT 19 (69)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 556666666666666644
No 232
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=23.00 E-value=8.3e+02 Score=25.03 Aligned_cols=67 Identities=30% Similarity=0.396 Sum_probs=30.0
Q ss_pred HHhhhHHHHHHHHHHHHhhhhhhhhHHHHHhhhhhhhHHHHHHHhhhhcCCCCcchhhhhhHHHHhhHHHHHHH
Q 008522 370 QLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQ 443 (563)
Q Consensus 370 ~isdmEn~IedLK~kvskAESRAe~AEskc~lLteTN~EL~eEL~~Lks~~ss~~ek~~~LE~qLkese~QLqh 443 (563)
.+..-+..+..|-.+.-.|+.-+..-+.+-.-+-+.+..|...-..... + -..|+.++.+.......
T Consensus 27 ~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~e------E-k~~Le~e~~e~~~~i~~ 93 (246)
T PF00769_consen 27 ALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEE------E-KEQLEQELREAEAEIAR 93 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------H-HHHHHHHHHHHHHHHHH
Confidence 3444455566666666666665555555544444444444433222221 1 23466666666555443
No 233
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=22.63 E-value=6.5e+02 Score=26.01 Aligned_cols=65 Identities=18% Similarity=0.145 Sum_probs=52.3
Q ss_pred cccchhhhhhhhhhHHhHHHHHHHhHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008522 493 LSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVLILL 561 (563)
Q Consensus 493 LsEtN~eLneELsflrsk~~~LE~sL~~A~~~K~~TakdI~~~tK~i~dLv~qLa~ERErL~~Qissl~ 561 (563)
|-+.|..+++++.-++.+++..+.+|..|...+.+=-|+. .-+.+=--.|..|-++|+.||-+=+
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~----e~~~~EydrLlee~~~Lq~~i~~~~ 213 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQS----EGLQDEYDRLLEEYSKLQEQIESGG 213 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHcccHHHHHHHHHHHHHHHHhccC
Confidence 7888999999999999999999999999987766544443 3444556788889999999997644
No 234
>smart00498 FH2 Formin Homology 2 Domain. FH proteins control rearrangements of the actin cytoskeleton, especially in the context of cytokinesis and cell polarisation. Members of this family have been found to interact with Rho-GTPases, profilin and other actin-assoziated proteins. These interactions are mediated by the proline-rich FH1 domain, usually located in front of FH2 (but not listed in SMART). Despite this cytosolic function, vertebrate formins have been assigned functions within the nucleus. A set of Formin-Binding Proteins (FBPs) has been shown to bind FH1 with their WW domain.
Probab=22.54 E-value=6.8e+02 Score=27.33 Aligned_cols=106 Identities=20% Similarity=0.302 Sum_probs=72.2
Q ss_pred hhhhHHHHHHHHHhhcCCccccccCCCccchHHHHHHHHHHHhhhhhhhhHHhHHHHHHHHHhhhhcccceeccccchhh
Q 008522 59 KLVNLHVLLMYLLARGDDLETLVMENSDVAATSIEKALVYDLLFGILDSELREVERLLDTIHVEIVNVHHKISSCKHLRE 138 (563)
Q Consensus 59 Kl~NL~~l~M~l~~~~~d~E~~~~~~~~i~~~s~eka~efDlL~gildSEv~Ele~~~~~lq~~I~~~~~~~~s~~~~~~ 138 (563)
|..=||.++-++.....++-.+..+ + .+|++|-.++ ..|.++++++.+=+..++.++..... ......
T Consensus 242 k~tLLhylv~~i~~~~p~~~~f~~e---l--~~v~~askvs---~~l~~~~~~l~~~~~~~e~~~~~l~~----~~~~~d 309 (432)
T smart00498 242 KTTLLHFLVKIIRKKYPDLLDFYSD---L--HHLDKAKVNL---EQLEKDVKQLERQIKNLETDLGGLSD----PENLDD 309 (432)
T ss_pred CccHHHHHHHHHHHhChhhccchhh---h--ccHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhcCC----CCCccc
Confidence 5555777777787777777655333 2 3466676666 67889999999988888876644322 112234
Q ss_pred HHHHHHHhhhhhhhhHhhHHHHHHHHHHHHHhhHhhhhhh
Q 008522 139 VFTIMEKMEKKLHDCEGSLKESQEHVSELKMQSAKFQRVL 178 (563)
Q Consensus 139 ~f~~~~~~~~kL~~~~~sLkq~qe~~~eik~qsa~f~r~~ 178 (563)
.|... |..=+.++...+..++..+..+.....+.-+.+
T Consensus 310 ~f~~~--m~~F~~~a~~~~~~l~~~~~~~~~~~~~~~~yf 347 (432)
T smart00498 310 KFIEV--MKPFLKAAKEKYDKLQKDLSDLKTRFEKLVEYY 347 (432)
T ss_pred hHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55543 477889999999999998888887666555555
No 235
>PRK02793 phi X174 lysis protein; Provisional
Probab=22.43 E-value=1.1e+02 Score=25.88 Aligned_cols=57 Identities=16% Similarity=0.234 Sum_probs=0.0
Q ss_pred HHhhHHHHHHHHHHhhhhhhhhchhhhhhhcccccchhhhhhhhhhHHhHHHHHHHh
Q 008522 461 AIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESS 517 (563)
Q Consensus 461 ti~DME~vIedLksKv~kaE~rae~~E~kc~~LsEtN~eLneELsflrsk~~~LE~s 517 (563)
+..+|+.=|.+|..|+++.|.-.+.+-+-.+--...-..|...|..|..|+.+++.+
T Consensus 2 ~~~~~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~~ 58 (72)
T PRK02793 2 QDSSLEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQPS 58 (72)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
No 236
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=22.42 E-value=5.1e+02 Score=22.53 Aligned_cols=82 Identities=18% Similarity=0.174 Sum_probs=54.6
Q ss_pred HHHHHhhHHHHHHHHHHhhhhhhhhchhhhhhhcccccchhhhhhhhhhHHhHHHHHHHhHHHHHHH--H-HhhHHHHHH
Q 008522 458 LYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIE--K-AASAKEVNH 534 (563)
Q Consensus 458 l~sti~DME~vIedLksKv~kaE~rae~~E~kc~~LsEtN~eLneELsflrsk~~~LE~sL~~A~~~--K-~~TakdI~~ 534 (563)
..++|..|+.++.....-....- ...-+...-.+|...|..++.-+++|+.....+... | --+..+|.-
T Consensus 10 v~~sl~~l~~~~~~~~~~~~~~~--------~~~e~~~~~~eL~~~l~~ie~~L~DL~~aV~ive~np~kF~l~~~Ei~~ 81 (97)
T PF09177_consen 10 VQSSLDRLESLYRRWQRLRSDTS--------SSEELKWLKRELRNALQSIEWDLEDLEEAVRIVEKNPSKFNLSEEEISR 81 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHCC---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHT-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCC--------CcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCCHHHHHH
Confidence 34455555555554443332111 122344556788899999999999999998886544 3 358999999
Q ss_pred HhHHHHHHHHHHH
Q 008522 535 RTKLMMEMVMQLA 547 (563)
Q Consensus 535 ~tK~i~dLv~qLa 547 (563)
|...|.++-.++.
T Consensus 82 Rr~fv~~~~~~i~ 94 (97)
T PF09177_consen 82 RRQFVSAIRNQIK 94 (97)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999998887764
No 237
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=22.40 E-value=8.7e+02 Score=25.03 Aligned_cols=121 Identities=20% Similarity=0.211 Sum_probs=72.2
Q ss_pred HHHhhHHHhhhHHHHHhhhh-hhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhcccchhchhHHH
Q 008522 230 LEKKISELNQNEEQLKLKLH-HTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELK 308 (563)
Q Consensus 230 LEkkL~~s~~~eeeLk~kL~-~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~ 308 (563)
|-..|+..-.+++.++..+. +..++...|++...++ -|++.+= =..+-.|..+.+.
T Consensus 78 Ls~als~laev~~~i~~~~~~qa~qd~~~f~e~l~eY-iRli~SV---------K~~f~~R~k~~~~------------- 134 (234)
T cd07665 78 LSRALSQLAEVEEKIEQLHQEQANNDFFLLAELLADY-IRLLSAV---------RGAFDQRMKTWQR------------- 134 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH-HHHHHHH---------HHHHHHHHHHHHH-------------
Confidence 34556666666666655543 3456677777766553 3333221 1223334444433
Q ss_pred HHHHhHHHHHhhhhHHHHHhhhcCchhhhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhH------------HHHhhhHH
Q 008522 309 SKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQ------------EQLNEMDN 376 (563)
Q Consensus 309 sKL~~~~eqL~~k~~~Lekl~~s~~SE~~sL~eKv~sLEeQLkese~Ql~~akas~ea~~------------~~isdmEn 376 (563)
...+...|..|+..+.||.... -.+|+..++..+++.+.+...++...+.+- +++.||.+
T Consensus 135 --~~~~~~~l~kKr~~~~Kl~~~~------~~dK~~~a~~Ev~e~e~k~~~a~~~fe~is~~ik~El~rFe~er~~Dfk~ 206 (234)
T cd07665 135 --WQDAQAMLQKKREAEARLLWAN------KPDKLQQAKDEIAEWESRVTQYERDFERISATVRKEVIRFEKEKSKDFKN 206 (234)
T ss_pred --HHHHHHHHHHHHHHHHHHHhcC------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666667777775431 257999999999999998888887776542 25557777
Q ss_pred HHHHH
Q 008522 377 FIESL 381 (563)
Q Consensus 377 ~IedL 381 (563)
.|+..
T Consensus 207 ~v~~f 211 (234)
T cd07665 207 HIIKY 211 (234)
T ss_pred HHHHH
Confidence 66653
No 238
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=22.38 E-value=4.6e+02 Score=25.24 Aligned_cols=33 Identities=24% Similarity=0.302 Sum_probs=19.6
Q ss_pred HHhhhHHHHHHHHHHHHhhhhhhhhHHHHHhhh
Q 008522 370 QLNEMDNFIESLKESLYGAESRAESAEEKVTQL 402 (563)
Q Consensus 370 ~isdmEn~IedLK~kvskAESRAe~AEskc~lL 402 (563)
+......-|++||.++.+++.-.+.--.+++.|
T Consensus 155 ~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l 187 (192)
T PF05529_consen 155 ENKKLSEEIEKLKKELEKKEKEIEALKKQSEGL 187 (192)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556667777777777666555544444443
No 239
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=22.22 E-value=5.2e+02 Score=30.14 Aligned_cols=73 Identities=19% Similarity=0.186 Sum_probs=42.9
Q ss_pred HHHHHHhccchHHHHhhhhHHHHhhhhHHhhhcccchhchhHHHHHHHhHHHHHhhhhHHHHHhhhcCchhhhhHHHHHH
Q 008522 265 VWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVK 344 (563)
Q Consensus 265 ~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~Lekl~~s~~SE~~sL~eKv~ 344 (563)
+-.|.-.+.++.+.|..-...+..+|...|..|+....+..=+ . .+.|+..+.+.+.
T Consensus 258 l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~---------------------d--~~~ea~~~l~~~~ 314 (726)
T PRK09841 258 IARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSV---------------------D--LNLEAKAVLEQIV 314 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC---------------------C--CCHHHHHHHHHHH
Confidence 3345666677777776666666666666665554443332100 0 1355666777777
Q ss_pred HHHHHHHHHHHHHhhh
Q 008522 345 SLEEQLKESEIRLQNA 360 (563)
Q Consensus 345 sLEeQLkese~Ql~~a 360 (563)
.|+.|+.+...+....
T Consensus 315 ~l~~ql~~l~~~~~~l 330 (726)
T PRK09841 315 NVDNQLNELTFREAEI 330 (726)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7888877776665443
No 240
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=22.14 E-value=1.2e+02 Score=32.87 Aligned_cols=105 Identities=14% Similarity=0.202 Sum_probs=9.5
Q ss_pred HHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhcccchhchhHHHHHHHhHHHHHhhhhHHHHHhhhcCchhhhhHHHHH
Q 008522 264 VVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKV 343 (563)
Q Consensus 264 ~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~Lekl~~s~~SE~~sL~eKv 343 (563)
.+++|+..=|.+..-|.+....+..++..++.+|+....-=++++.-|.... +.+.+|+..|
T Consensus 32 ~I~eRLsaLEssv~sL~~SVs~lss~iSdLss~L~~l~~sl~~~~s~L~sLs------------------stV~~lq~Sl 93 (326)
T PF04582_consen 32 PIRERLSALESSVASLSDSVSSLSSTISDLSSDLQDLASSLADMTSELNSLS------------------STVTSLQSSL 93 (326)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHH
Confidence 4566666666666666666666666666666666554443334433333222 3344444455
Q ss_pred HHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHH
Q 008522 344 KSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLY 386 (563)
Q Consensus 344 ~sLEeQLkese~Ql~~akas~ea~~~~isdmEn~IedLK~kvs 386 (563)
..|+.-+...-..+.....+.-..+..++.|..-|-.||..|+
T Consensus 94 ~~lsssVs~lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLksdVS 136 (326)
T PF04582_consen 94 SSLSSSVSSLSSTLSDHSSSISDLQSSVSALSTDVSNLKSDVS 136 (326)
T ss_dssp ------------------------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHhhhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhhh
Confidence 4444444443333333333333334444555555555555543
No 241
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=22.10 E-value=1.5e+03 Score=27.62 Aligned_cols=59 Identities=15% Similarity=0.239 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHhccchHHHHhh-hhHHHHhhhh-HHhhhcccchhchhHHHHHHHhHH
Q 008522 256 FRMEEAAEVVWGRFLEAENSAEVLMG-ISKEMLGRFQ-IVQFNLNGSLQRESELKSKLGDFI 315 (563)
Q Consensus 256 ~~lEE~~~~~~er~~EAENa~EvL~g-~skel~gkLq-~~qf~L~as~~REsel~sKL~~~~ 315 (563)
..||+..+.+-+-++.|.|+...++. .+++++.||. .+...|+++..-.+ |+.||...-
T Consensus 432 ~~Le~elekLk~eilKAk~s~~~~~~~~L~e~IeKLk~E~d~e~S~A~~~~g-Lk~kL~~Lr 492 (762)
T PLN03229 432 RELEGEVEKLKEQILKAKESSSKPSELALNEMIEKLKKEIDLEYTEAVIAMG-LQERLENLR 492 (762)
T ss_pred ccHHHHHHHHHHHHHhcccccCCCCChHHHHHHHHHHHHHHHHHHHhhhhhh-HHHHHHHHH
Confidence 35777777788888888666654443 6778888875 35555555554433 555554444
No 242
>smart00340 HALZ homeobox associated leucin zipper.
Probab=21.81 E-value=67 Score=25.64 Aligned_cols=22 Identities=27% Similarity=0.327 Sum_probs=19.7
Q ss_pred HHhhhhhhhHHHHHHHhhhhcC
Q 008522 398 KVTQLTDTNLELSEEINFLKGN 419 (563)
Q Consensus 398 kc~lLteTN~EL~eEL~~Lks~ 419 (563)
=|.-||+.|-.|..|+..||..
T Consensus 13 cce~LteeNrRL~ke~~eLral 34 (44)
T smart00340 13 CCESLTEENRRLQKEVQELRAL 34 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3778999999999999999986
No 243
>PTZ00464 SNF-7-like protein; Provisional
Probab=21.79 E-value=5.9e+02 Score=25.82 Aligned_cols=58 Identities=5% Similarity=0.074 Sum_probs=42.0
Q ss_pred hhhhhhhHHhHHHHHHHhHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 008522 500 LKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVLIL 560 (563)
Q Consensus 500 LneELsflrsk~~~LE~sL~~A~~~K~~TakdI~~~tK~i~dLv~qLa~ERErL~~Qissl 560 (563)
+..|++.++..+...-+ .+...+...|.-+.-++|..+....++..=+..|..++.++
T Consensus 37 ld~E~~~ak~~~k~~~~---~~~~~~K~~Al~~LK~KK~~E~ql~~l~~q~~nleq~~~~i 94 (211)
T PTZ00464 37 IDAELMKLKEQIQRTRG---MTQSRHKQRAMQLLQQKRMYQNQQDMMMQQQFNMDQLQFTT 94 (211)
T ss_pred HHHHHHHHHHHHHHhcc---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777778766653221 34444566788888889999998888888888888777765
No 244
>PF02181 FH2: Formin Homology 2 Domain; InterPro: IPR015425 Formin homology (FH) proteins play a crucial role in the reorganisation of the actin cytoskeleton, which mediates various functions of the cell cortex including motility, adhesion, and cytokinesis []. Formins are multidomain proteins that interact with diverse signalling molecules and cytoskeletal proteins, although some formins have been assigned functions within the nucleus. Formins are characterised by the presence of three FH domains (FH1, FH2 and FH3), although members of the formin family do not necessarily contain all three domains []. The proline-rich FH1 domain mediates interactions with a variety of proteins, including the actin-binding protein profilin, SH3 (Src homology 3) domain proteins, and WW domain proteins. The FH2 domain is required for the self-association of formin proteins through the ability of FH2 domains to directly bind each other [], and may also act to inhibit actin polymerisation []. The FH3 domain (IPR010472 from INTERPRO) is less well conserved and may be important for determining intracellular localisation of formin family proteins. In addition, some formins can contain a GTPase-binding domain (GBD) (IPR010473 from INTERPRO) required for binding to Rho small GTPases, and a C-terminal conserved Dia-autoregulatory domain (DAD). This entry represents the FH2 domain, which was shown by X-ray crystallography to have an elongated, crescent shape containing three helical subdomains [].; PDB: 1Y64_B 1UX4_A 1UX5_A 3O4X_H 3OBV_E 1V9D_D 2Z6E_B 2J1D_G.
Probab=21.57 E-value=9.4e+02 Score=25.14 Aligned_cols=173 Identities=20% Similarity=0.324 Sum_probs=89.7
Q ss_pred hhHHhHHHHHHHHHhhhhcccceeccccchhhHHHHHHHhhhhhhhhHhhHHHHHHHHHHHHHhhHhhhhhhhhcc----
Q 008522 107 SELREVERLLDTIHVEIVNVHHKISSCKHLREVFTIMEKMEKKLHDCEGSLKESQEHVSELKMQSAKFQRVLSYFI---- 182 (563)
Q Consensus 107 SEv~Ele~~~~~lq~~I~~~~~~~~s~~~~~~~f~~~~~~~~kL~~~~~sLkq~qe~~~eik~qsa~f~r~~~~~~---- 182 (563)
+.+...|.|+-.+-. |-+.+.++..+ .-+..+.+.+.+....|.....-+.+|| .|..|.+++...-
T Consensus 139 ~~L~~~E~f~~~l~~-ip~~~~rl~~~-------~~~~~f~~~~~~l~~~l~~l~~a~~~l~-~S~~l~~lL~~iL~~GN 209 (370)
T PF02181_consen 139 ATLGPAEQFLLELSK-IPRLKERLEAL-------LFKSEFEEQLEELKEKLEKLEAACEELR-ESKSLRRLLEIILAIGN 209 (370)
T ss_dssp TTB-HHHHHHHHHTT-STTHHHHHHHH-------HHHHTHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHH
T ss_pred HhhccHHHHHHHHHH-HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCchHHHHHHHHHHHHH
Confidence 556667777777765 66666665443 3333457888888888888888888885 7889999887632
Q ss_pred --cCCC--cccccccccCCcccccccccccchHHHHHHHHHHHHhhhhhhhHHHhhHHHhhhHHHHHhhhhhhhHHHHHH
Q 008522 183 --HGNN--DEALEFSANGQLSNINGKSKMKNADQQRHILRMLEKSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRM 258 (563)
Q Consensus 183 --~~~~--~~~~~~~e~~~~~~~~~~~~mqt~eqqR~iLrMLekSlA~EldLEkkL~~s~~~eeeLk~kL~~~eqe~~~l 258 (563)
|+.+ ++..+|.-+.=..- ..+.+.+.....|+.+-+.+.... -+.-....+| ..+
T Consensus 210 ~lN~g~~~g~A~GF~L~sL~kL----~~~Ks~d~~~tLL~~l~~~~~~~~------~~~~~~~~eL-----------~~v 268 (370)
T PF02181_consen 210 FLNGGTPRGNAKGFKLSSLSKL----KDTKSNDNKTTLLHYLVKIVEEKF------PDLLDLEDEL-----------SSV 268 (370)
T ss_dssp HHSTCSTTCS-SEE-GGGGGGC----CCSB-STTTSBHHHHHHHHHHTTS------GGGGGHHHHT-----------TTH
T ss_pred HhccCCCccccceecHHhHHHH----HhcccccCCchHHHHHHHHHHhcC------hHHhccHHHH-----------hhH
Confidence 2222 22222222221111 122223456778888877766521 1111111111 111
Q ss_pred HHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhcccchh---chhHHHHHHHhHHHHHh
Q 008522 259 EEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQ---RESELKSKLGDFIEQLK 319 (563)
Q Consensus 259 EE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~---REsel~sKL~~~~eqL~ 319 (563)
..++ .- -...+.+..+.+..++..++..+..... -.+....++....+...
T Consensus 269 ~~a~---------~~-~~~~l~~~i~~l~~~~~~~~~~l~~~~~~~~~~~~f~~~~~~f~~~~~ 322 (370)
T PF02181_consen 269 EKAS---------KV-SLDELEQDIKELEKGLEKIKKELEAIEKDEEDDDKFKEKMKEFLEEAE 322 (370)
T ss_dssp HHCC---------TS--HHHHHHHHHHHHHHHHHHHHHHHHCCTTSSTT-THHHHHHHHHHHHH
T ss_pred Hhhh---------hh-hHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHH
Confidence 1111 11 1334555566666666666666655544 44555666655554444
No 245
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=21.56 E-value=3.6e+02 Score=29.09 Aligned_cols=58 Identities=24% Similarity=0.248 Sum_probs=52.5
Q ss_pred hHHHHhhhhHHHHhhhhHHhhhcccchhchhHHHHHHHhHHHHHhhhhHHHHHhhhcC
Q 008522 275 SAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTK 332 (563)
Q Consensus 275 a~EvL~g~skel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~Lekl~~s~ 332 (563)
+--||+-.-+..+-++|.+-..||....-|..|-+|++.-.-.|+.-..-|++|++-+
T Consensus 106 ~Ekvlk~aIq~i~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~LqsiR 163 (338)
T KOG3647|consen 106 VEKVLKSAIQAIQVRLQSSRAQLNNVASDEAALGSKIERRKAELERTRKRLEALQSIR 163 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3457888999999999999999999999999999999999888998888899999873
No 246
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=21.49 E-value=7.9e+02 Score=24.23 Aligned_cols=30 Identities=30% Similarity=0.371 Sum_probs=14.4
Q ss_pred hhhhcccccchhhhhhhhhhHHhHHHHHHH
Q 008522 487 EEQCIVLSEDNFELKNKQSFMRDKIKILES 516 (563)
Q Consensus 487 E~kc~~LsEtN~eLneELsflrsk~~~LE~ 516 (563)
+.++.-|...+..|..++..++.+++.++.
T Consensus 126 ~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek 155 (189)
T PF10211_consen 126 EEEIEELEEEKEELEKQVQELKNKCEQLEK 155 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444455555555555555554443
No 247
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=21.34 E-value=5.5e+02 Score=24.28 Aligned_cols=71 Identities=21% Similarity=0.321 Sum_probs=35.7
Q ss_pred HHHhhhhHHhhhcccchhchhHHHHHHHhHHHHHhhhhHHHHHhhhc--------------Cchhh-hhHHHHHHHHHHH
Q 008522 285 EMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLEST--------------KNSEV-LTMKEKVKSLEEQ 349 (563)
Q Consensus 285 el~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~Lekl~~s--------------~~SE~-~sL~eKv~sLEeQ 349 (563)
....++|..|..|.....+=.-+..-|+. .+.--.+|+++..+ +.+++ ..|.+++..||.+
T Consensus 10 ~~l~q~QqLq~ql~~~~~qk~~le~qL~E----~~~al~Ele~l~eD~~vYk~VG~llvk~~k~~~~~eL~er~E~Le~r 85 (119)
T COG1382 10 AQLAQLQQLQQQLQKVILQKQQLEAQLKE----IEKALEELEKLDEDAPVYKKVGNLLVKVSKEEAVDELEERKETLELR 85 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhcCCcccHHHHHhhhHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 45667777777777666553333222222 22222344455444 12332 2466666666666
Q ss_pred HHHHHHHHhh
Q 008522 350 LKESEIRLQN 359 (563)
Q Consensus 350 Lkese~Ql~~ 359 (563)
++..+.|-..
T Consensus 86 i~tLekQe~~ 95 (119)
T COG1382 86 IKTLEKQEEK 95 (119)
T ss_pred HHHHHHHHHH
Confidence 6655554433
No 248
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=21.28 E-value=5.4e+02 Score=22.20 Aligned_cols=75 Identities=19% Similarity=0.265 Sum_probs=49.4
Q ss_pred cchhhHHHHHHHhhhhhhhhHhhHHHHHHHHHHHHHhhHhhhhhhhhcccCCCcccccccccCCcccccccccccchHHH
Q 008522 134 KHLREVFTIMEKMEKKLHDCEGSLKESQEHVSELKMQSAKFQRVLSYFIHGNNDEALEFSANGQLSNINGKSKMKNADQQ 213 (563)
Q Consensus 134 ~~~~~~f~~~~~~~~kL~~~~~sLkq~qe~~~eik~qsa~f~r~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~mqt~eqq 213 (563)
+.+..+|..+..+.. |..-+-+++-..+..||....+...++..+.... .|+++|
T Consensus 3 e~lP~i~~~l~~~~~---d~~~~~kd~~~~~~~lk~Klq~ar~~i~~lpgi~----------------------~s~eeq 57 (83)
T PF07544_consen 3 EFLPLIFDILHQISK---DPPLSSKDLDTATGSLKHKLQKARAAIRELPGID----------------------RSVEEQ 57 (83)
T ss_pred cccchHHHHHHHHhh---cCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCcc----------------------CCHHHH
Confidence 344455555521111 1455677888888999988888777776644211 377888
Q ss_pred HHHHHHHHHhhhhhhhHHHh
Q 008522 214 RHILRMLEKSLARELDLEKK 233 (563)
Q Consensus 214 R~iLrMLekSlA~EldLEkk 233 (563)
-..++.||..+++--.+=.+
T Consensus 58 ~~~i~~Le~~i~~k~~~L~~ 77 (83)
T PF07544_consen 58 EEEIEELEEQIRKKREVLQK 77 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999998876555333
No 249
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=21.24 E-value=1.6e+03 Score=27.61 Aligned_cols=83 Identities=27% Similarity=0.299 Sum_probs=57.0
Q ss_pred CchhhhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHhhhhhhhHHHHH
Q 008522 332 KNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSE 411 (563)
Q Consensus 332 ~~SE~~sL~eKv~sLEeQLkese~Ql~~akas~ea~~~~isdmEn~IedLK~kvskAESRAe~AEskc~lLteTN~EL~e 411 (563)
++.++-.+.+|+.+|-++|.=.+-+++.+-. +++..+-=+.+.+=+ ....+||-+..+.+.....|-+.|.++|.
T Consensus 103 kda~lrq~eekn~slqerLelaE~~l~qs~r-ae~lpeveael~qr~----~al~~aee~~~~~eer~~kl~~~~qe~na 177 (916)
T KOG0249|consen 103 KDADLRQNEEKNRSLQERLELAEPKLQQSLR-AETLPEVEAELAQRN----AALTKAEEHSGNIEERTRKLEEQLEELNA 177 (916)
T ss_pred cchhhchhHHhhhhhhHHHHHhhHhhHhHHh-hhhhhhhHHHHHHHH----HHHHHHHHhhccHHHHHHHHHHHHHHHHH
Confidence 4677777778888887777776666655444 332222111222222 23567888899999999999999999999
Q ss_pred HHhhhhcC
Q 008522 412 EINFLKGN 419 (563)
Q Consensus 412 EL~~Lks~ 419 (563)
||...+.+
T Consensus 178 eL~rarqr 185 (916)
T KOG0249|consen 178 ELQRARQR 185 (916)
T ss_pred HHHHHHHH
Confidence 99888875
No 250
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=21.22 E-value=1.2e+03 Score=26.04 Aligned_cols=77 Identities=21% Similarity=0.231 Sum_probs=52.3
Q ss_pred HHhHhhhhhhHHHHHhHHHHHhhHHHHHHHHHHhhhhhhhhchhhhhhhcccccchhhhhhhhhhHHhHHHHHHHhHHHH
Q 008522 442 QQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRA 521 (563)
Q Consensus 442 qhA~As~eAs~eqQ~ml~sti~DME~vIedLksKv~kaE~rae~~E~kc~~LsEtN~eLneELsflrsk~~~LE~sL~~A 521 (563)
++++.--+-+++-+.-+.+|++|++.....--++ .+-|.+.|.+|.+++.-|..+....+.-++.-
T Consensus 98 ~q~k~eEerRkea~~~fqvtL~diqktla~~~~~--------------n~klre~NieL~eKlkeL~eQy~~re~hidk~ 163 (391)
T KOG1850|consen 98 AQMKKEEERRKEAVEQFQVTLKDIQKTLAEGRSK--------------NDKLREDNIELSEKLKELGEQYEEREKHIDKQ 163 (391)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchh--------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455565666788999988765544333 45677889999999999888888877777776
Q ss_pred HHHHHhhHHHHH
Q 008522 522 NIEKAASAKEVN 533 (563)
Q Consensus 522 ~~~K~~TakdI~ 533 (563)
+.-|. --++.|
T Consensus 164 ~e~ke-l~~ql~ 174 (391)
T KOG1850|consen 164 IQKKE-LWEQLG 174 (391)
T ss_pred HHHHH-HHHHHh
Confidence 66665 444443
No 251
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=21.13 E-value=6.6e+02 Score=24.48 Aligned_cols=49 Identities=20% Similarity=0.318 Sum_probs=21.3
Q ss_pred HHhhhHHHHHHHHHHHHhhhhhhhhHHHHHhhhhhhhHHHHHHHhhhhc
Q 008522 370 QLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKG 418 (563)
Q Consensus 370 ~isdmEn~IedLK~kvskAESRAe~AEskc~lLteTN~EL~eEL~~Lks 418 (563)
+-.++.+-|+.|....-.-+.++.+.-....-|.+...+|+.+++.+..
T Consensus 90 e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~~l~e 138 (158)
T PF09744_consen 90 ERKDLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEYNRLHE 138 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHH
Confidence 3334444444444444444444444434444444444444444444433
No 252
>PRK00846 hypothetical protein; Provisional
Probab=21.07 E-value=1.4e+02 Score=26.14 Aligned_cols=54 Identities=11% Similarity=0.108 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhhhhhhhhchhhhhhhcccccchhhhhhhhhhHHhHHHHHHHh
Q 008522 464 DMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESS 517 (563)
Q Consensus 464 DME~vIedLksKv~kaE~rae~~E~kc~~LsEtN~eLneELsflrsk~~~LE~s 517 (563)
+|+.=|++|..|++..|.-.+.+-.-.+-.-..-..|...|..+..|+++++.+
T Consensus 10 ~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~~s 63 (77)
T PRK00846 10 ALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVRST 63 (77)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
No 253
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=20.64 E-value=6.1e+02 Score=25.96 Aligned_cols=28 Identities=21% Similarity=0.577 Sum_probs=14.6
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 008522 333 NSEVLTMKEKVKSLEEQLKESEIRLQNA 360 (563)
Q Consensus 333 ~SE~~sL~eKv~sLEeQLkese~Ql~~a 360 (563)
.+|+++|..-++.+=.+++..+.++...
T Consensus 30 ~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l 57 (202)
T PF06818_consen 30 DSEIVSLRAQLRELRAELRNKESQIQEL 57 (202)
T ss_pred HhHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 4556666555555555555555544433
No 254
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=20.55 E-value=5.9e+02 Score=25.92 Aligned_cols=96 Identities=22% Similarity=0.313 Sum_probs=0.0
Q ss_pred cchhchhHHHHHHHhHHHHHhhhhHHHHHhhhc--------------CchhhhhHHHHHHHHHHHHHHHHHHHhhhhhch
Q 008522 299 GSLQRESELKSKLGDFIEQLKAKDMVLQKLEST--------------KNSEVLTMKEKVKSLEEQLKESEIRLQNANACF 364 (563)
Q Consensus 299 as~~REsel~sKL~~~~eqL~~k~~~Lekl~~s--------------~~SE~~sL~eKv~sLEeQLkese~Ql~~akas~ 364 (563)
|..+||-==+.-....+++|.+....-.|.-+. ++.|.+.|-.|+.-|++++++..--.-.+.|..
T Consensus 30 ~~lq~e~lgktavqk~Ld~La~~Gki~~K~YGKqKIY~a~QDqF~~~~~eel~~ld~~i~~l~ek~q~l~~t~s~veaEi 109 (201)
T KOG4603|consen 30 GNLQREHLGKTAVQKTLDQLAQQGKIKEKMYGKQKIYFADQDQFDMVSDEELQVLDGKIVALTEKVQSLQQTCSYVEAEI 109 (201)
T ss_pred HHHHHHhccchHHHHHHHHHHHcCchhHHhccceeeEeecHHhhcCCChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhHH--HHhhhHHHHHHHHHHHHhhhhhhhh
Q 008522 365 QTSQE--QLNEMDNFIESLKESLYGAESRAES 394 (563)
Q Consensus 365 ea~~~--~isdmEn~IedLK~kvskAESRAe~ 394 (563)
-...+ .+-.|..-|.+||..|..-+-|..+
T Consensus 110 k~L~s~Lt~eemQe~i~~L~kev~~~~erl~~ 141 (201)
T KOG4603|consen 110 KELSSALTTEEMQEEIQELKKEVAGYRERLKN 141 (201)
T ss_pred HHHHHhcChHHHHHHHHHHHHHHHHHHHHHHH
No 255
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=20.27 E-value=3.1e+02 Score=25.69 Aligned_cols=26 Identities=35% Similarity=0.528 Sum_probs=22.6
Q ss_pred CchhhhhHHHHHHHHHHHHHHHHHHH
Q 008522 332 KNSEVLTMKEKVKSLEEQLKESEIRL 357 (563)
Q Consensus 332 ~~SE~~sL~eKv~sLEeQLkese~Ql 357 (563)
+.|++..|.++|..||+|++..+-++
T Consensus 81 r~~~~~~l~~rvd~Lerqv~~Lenk~ 106 (108)
T COG3937 81 RQSEMDELTERVDALERQVADLENKL 106 (108)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHh
Confidence 56899999999999999999887654
No 256
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=20.26 E-value=9.6e+02 Score=28.88 Aligned_cols=53 Identities=26% Similarity=0.401 Sum_probs=33.0
Q ss_pred HHHhhHHHHHHHHHHhhhhhhhhchhhhhhh---cccccchhhhhhhhhhHHhHHHHHH
Q 008522 460 SAIWDMETLIEDLKSKVSKAESKTESVEEQC---IVLSEDNFELKNKQSFMRDKIKILE 515 (563)
Q Consensus 460 sti~DME~vIedLksKv~kaE~rae~~E~kc---~~LsEtN~eLneELsflrsk~~~LE 515 (563)
.+|+|+|.+|++-..|+--.|.- +..+. .-|--.-++|--|+|.|.=|+-.||
T Consensus 139 EKIrDLE~cie~kr~kLnatEEm---LQqellsrtsLETqKlDLmaevSeLKLkltalE 194 (861)
T KOG1899|consen 139 EKIRDLETCIEEKRNKLNATEEM---LQQELLSRTSLETQKLDLMAEVSELKLKLTALE 194 (861)
T ss_pred hhHHHHHHHHHHHHhhhchHHHH---HHHHHHhhhhHHHHHhHHHHHHHHhHHHHHHHH
Confidence 47999999999988888766522 22111 2233345566667776666665555
No 257
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=20.19 E-value=1.1e+03 Score=25.58 Aligned_cols=56 Identities=21% Similarity=0.170 Sum_probs=43.3
Q ss_pred hhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHH-hhhhHH
Q 008522 238 NQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEML-GRFQIV 293 (563)
Q Consensus 238 ~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~-gkLq~~ 293 (563)
-.+...+..+......-..++.+-...+-.+..++|+..+..+....-+- ++-+..
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~l~~lr~~~~~ae~~~~~~~~~~~l~~~~~~~~~ 236 (458)
T COG3206 180 AYLADQLEAQLEAFRRASDSLDERLEELRARLQEAEAQVEDFRAQHGLTDAARGQLL 236 (458)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchhH
Confidence 44667777888888888999999999999999999999888877665554 444443
Done!