Query 008522
Match_columns 563
No_of_seqs 57 out of 59
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 05:31:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008522.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008522hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1c1g_A Tropomyosin; contractIl 98.6 0.0001 3.5E-09 66.5 29.4 39 243-281 17-55 (284)
2 1c1g_A Tropomyosin; contractIl 98.5 0.00027 9.2E-09 63.7 28.9 13 546-558 270-282 (284)
3 1i84_S Smooth muscle myosin he 98.1 2.4E-06 8.1E-11 98.4 6.5 20 498-517 1147-1166(1184)
4 1i84_S Smooth muscle myosin he 98.0 6E-06 2.1E-10 95.1 8.1 62 460-521 1074-1135(1184)
5 2efr_A General control protein 97.7 0.00037 1.3E-08 65.0 12.2 125 342-480 1-125 (155)
6 2efr_A General control protein 96.9 0.045 1.5E-06 51.1 16.7 81 338-418 39-119 (155)
7 2b9c_A Striated-muscle alpha t 96.4 0.024 8.1E-07 52.2 11.2 142 286-438 1-142 (147)
8 3na7_A HP0958; flagellar bioge 94.5 0.78 2.7E-05 44.5 14.6 95 338-447 29-126 (256)
9 3o0z_A RHO-associated protein 94.4 1.2 4.1E-05 42.2 15.1 74 421-494 2-75 (168)
10 3na7_A HP0958; flagellar bioge 94.0 2 7E-05 41.6 16.2 109 289-402 12-123 (256)
11 2b9c_A Striated-muscle alpha t 92.8 0.3 1E-05 44.9 7.9 128 386-534 13-140 (147)
12 3o0z_A RHO-associated protein 92.1 3.6 0.00012 39.0 14.4 21 339-359 4-24 (168)
13 3vkg_A Dynein heavy chain, cyt 92.1 5.5 0.00019 51.4 20.1 47 308-355 1909-1955(3245)
14 3u1c_A Tropomyosin alpha-1 cha 89.4 3.1 0.00011 35.7 10.4 53 333-385 43-95 (101)
15 3vkg_A Dynein heavy chain, cyt 89.2 16 0.00055 47.4 20.5 85 470-561 2010-2097(3245)
16 2fxo_A Myosin heavy chain, car 86.8 12 0.00041 33.1 12.8 48 464-518 80-127 (129)
17 2v71_A Nuclear distribution pr 86.6 14 0.00047 35.5 13.8 145 250-415 7-155 (189)
18 2fxo_A Myosin heavy chain, car 86.3 16 0.00055 32.3 13.3 82 462-543 43-124 (129)
19 2dfs_A Myosin-5A; myosin-V, in 86.2 3.6 0.00012 47.9 11.5 82 281-363 921-1006(1080)
20 2dfs_A Myosin-5A; myosin-V, in 85.5 5.7 0.00019 46.3 12.6 56 460-515 984-1043(1080)
21 3u1c_A Tropomyosin alpha-1 cha 81.0 24 0.00083 30.2 11.8 67 377-450 10-76 (101)
22 3oja_B Anopheles plasmodium-re 80.7 31 0.0011 36.0 14.8 26 497-522 560-585 (597)
23 2v71_A Nuclear distribution pr 79.7 45 0.0015 32.0 14.6 36 334-369 3-38 (189)
24 3tnu_B Keratin, type II cytosk 79.5 5.3 0.00018 35.3 7.4 82 405-510 44-125 (129)
25 1ic2_A Tropomyosin alpha chain 78.3 6.3 0.00022 32.4 7.0 61 378-445 8-68 (81)
26 3u59_A Tropomyosin beta chain; 78.0 10 0.00034 32.3 8.4 62 378-446 11-72 (101)
27 3oja_B Anopheles plasmodium-re 77.1 16 0.00055 38.1 11.4 57 374-437 500-556 (597)
28 3tnu_A Keratin, type I cytoske 76.1 6.2 0.00021 35.0 6.9 93 395-511 36-128 (131)
29 1m1j_B Fibrinogen beta chain; 75.7 24 0.00082 37.9 12.4 103 373-491 97-199 (464)
30 2k48_A Nucleoprotein; viral pr 75.5 2.9 0.0001 37.1 4.5 75 279-354 26-102 (107)
31 3u59_A Tropomyosin beta chain; 74.9 20 0.00068 30.5 9.5 49 333-381 43-91 (101)
32 3s4r_A Vimentin; alpha-helix, 74.8 20 0.00067 30.5 9.3 68 336-406 18-86 (93)
33 3i00_A HIP-I, huntingtin-inter 72.2 9.3 0.00032 34.2 7.0 104 298-404 6-113 (120)
34 3mq9_A Bone marrow stromal ant 67.3 14 0.00047 37.8 8.0 71 376-449 397-467 (471)
35 1ic2_A Tropomyosin alpha chain 67.1 24 0.00081 28.9 7.9 69 370-445 7-75 (81)
36 2jee_A YIIU; FTSZ, septum, coi 64.2 16 0.00056 31.0 6.5 59 459-517 19-77 (81)
37 3bas_A Myosin heavy chain, str 63.9 30 0.001 29.0 8.1 27 392-418 58-84 (89)
38 2ic6_A Nucleocapsid protein; h 62.7 12 0.00042 31.6 5.4 67 280-354 4-72 (78)
39 1x8y_A Lamin A/C; structural p 61.8 18 0.00061 30.2 6.3 79 411-513 3-81 (86)
40 3ol1_A Vimentin; structural ge 59.8 67 0.0023 28.2 9.9 78 334-418 20-104 (119)
41 3hnw_A Uncharacterized protein 56.2 42 0.0014 30.4 8.2 62 334-416 68-129 (138)
42 3swk_A Vimentin; cytoskeleton, 54.9 67 0.0023 26.8 8.7 74 338-418 4-84 (86)
43 1gk4_A Vimentin; intermediate 54.8 23 0.00079 29.3 5.8 78 412-513 2-79 (84)
44 2ic9_A Nucleocapsid protein; h 54.2 19 0.00065 31.5 5.3 68 280-355 4-73 (96)
45 3bas_A Myosin heavy chain, str 51.6 26 0.00091 29.3 5.7 46 367-412 12-57 (89)
46 2jee_A YIIU; FTSZ, septum, coi 50.8 33 0.0011 29.1 6.1 53 367-419 18-70 (81)
47 3qh9_A Liprin-beta-2; coiled-c 50.7 59 0.002 27.7 7.6 54 499-559 23-79 (81)
48 3cve_A Homer protein homolog 1 50.2 64 0.0022 26.8 7.6 33 333-365 13-45 (72)
49 4ev6_A Magnesium transport pro 47.9 2.1E+02 0.007 28.3 12.5 60 99-180 156-215 (339)
50 2v66_B Nuclear distribution pr 47.2 1.5E+02 0.0052 26.2 12.0 96 301-414 2-101 (111)
51 3ol1_A Vimentin; structural ge 45.7 1.5E+02 0.0053 25.8 11.4 28 455-482 36-63 (119)
52 1v9d_A Diaphanous protein homo 45.6 1.3E+02 0.0045 30.1 10.7 108 59-182 176-283 (340)
53 3htk_A Structural maintenance 44.7 76 0.0026 24.1 6.9 50 336-385 7-56 (60)
54 3mq9_A Bone marrow stromal ant 44.0 2E+02 0.0068 29.2 11.9 113 214-365 355-467 (471)
55 3s4r_A Vimentin; alpha-helix, 42.0 1E+02 0.0035 26.1 7.9 44 424-477 22-66 (93)
56 3cvf_A Homer-3, homer protein 40.9 68 0.0023 27.0 6.5 33 333-365 19-51 (79)
57 4emc_A Monopolin complex subun 40.8 31 0.0011 33.3 5.0 45 314-358 11-65 (190)
58 3hnw_A Uncharacterized protein 36.3 82 0.0028 28.5 6.8 55 458-519 80-134 (138)
59 2v4h_A NF-kappa-B essential mo 35.9 2.4E+02 0.0081 25.2 9.5 51 305-356 27-77 (110)
60 1t2k_D Cyclic-AMP-dependent tr 35.6 32 0.0011 26.7 3.5 36 483-518 24-59 (61)
61 2wt7_A Proto-oncogene protein 34.7 37 0.0013 26.6 3.8 37 483-519 25-61 (63)
62 1gk4_A Vimentin; intermediate 34.3 1.9E+02 0.0066 23.7 9.6 73 335-417 2-74 (84)
63 1ux5_A BNI1 protein; structura 33.9 1.4E+02 0.0046 30.6 8.8 106 63-182 261-368 (411)
64 3htk_B Structural maintenance 33.3 1.3E+02 0.0045 24.0 6.9 65 340-404 3-67 (73)
65 2ocy_A RAB guanine nucleotide 33.3 3E+02 0.01 25.6 14.8 29 457-485 119-147 (154)
66 3mq7_A Bone marrow stromal ant 33.2 1.2E+02 0.0043 27.4 7.3 24 426-449 72-95 (121)
67 3a7p_A Autophagy protein 16; c 32.2 2.2E+02 0.0077 26.6 9.1 109 428-555 38-146 (152)
68 4fi5_A Nucleoprotein; structur 30.1 69 0.0024 28.7 5.1 64 284-355 25-90 (113)
69 1m1j_B Fibrinogen beta chain; 29.8 2.4E+02 0.0084 30.3 10.2 32 369-400 168-199 (464)
70 4i1l_A Scurfin, forkhead box p 29.4 98 0.0034 26.9 5.8 37 520-556 36-72 (93)
71 3mov_A Lamin-B1; LMNB1, B-type 28.4 1.1E+02 0.0039 26.0 6.0 78 330-417 8-85 (95)
72 3qh9_A Liprin-beta-2; coiled-c 27.3 1.7E+02 0.006 24.8 6.8 53 334-386 26-78 (81)
73 2j1d_G DAAM1, disheveled-assoc 26.3 1.6E+02 0.0056 31.0 8.1 110 58-182 257-366 (483)
74 4emc_A Monopolin complex subun 26.3 1.5E+02 0.0051 28.7 7.0 47 388-441 11-64 (190)
75 3mov_A Lamin-B1; LMNB1, B-type 26.0 87 0.003 26.8 4.9 77 412-512 13-89 (95)
76 3ck6_A Putative membrane trans 25.3 3.4E+02 0.012 25.1 9.3 55 98-180 135-189 (252)
77 3t98_B Nucleoporin NUP58/NUP45 24.2 2.4E+02 0.0081 24.1 7.3 60 501-560 18-77 (93)
78 1x8y_A Lamin A/C; structural p 23.9 2.1E+02 0.0073 23.6 6.8 74 334-417 3-76 (86)
79 3tnu_A Keratin, type I cytoske 23.6 3.7E+02 0.013 23.5 9.9 84 333-416 37-124 (131)
80 2e7s_A RAB guanine nucleotide 22.9 1.4E+02 0.0048 27.4 5.9 6 429-434 121-126 (135)
81 3tnu_B Keratin, type II cytosk 22.7 3.8E+02 0.013 23.3 10.4 48 370-417 76-123 (129)
82 2ocy_A RAB guanine nucleotide 22.1 4.8E+02 0.016 24.2 11.6 9 406-414 117-125 (154)
83 4e61_A Protein BIM1; EB1-like 21.3 2.3E+02 0.0079 25.0 6.7 34 441-474 27-60 (106)
84 3m48_A General control protein 21.2 57 0.0019 23.7 2.3 28 391-418 1-28 (33)
85 3cvf_A Homer-3, homer protein 21.1 1.6E+02 0.0056 24.7 5.5 52 334-385 6-61 (79)
86 1g6u_A Domain swapped dimer; d 20.7 2.1E+02 0.0071 21.7 5.4 39 322-360 6-46 (48)
87 3jsv_C NF-kappa-B essential mo 20.4 4.2E+02 0.015 23.0 8.1 52 305-357 5-56 (94)
No 1
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=98.64 E-value=0.0001 Score=66.45 Aligned_cols=39 Identities=5% Similarity=-0.009 Sum_probs=14.3
Q ss_pred HHHhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhh
Q 008522 243 QLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMG 281 (563)
Q Consensus 243 eLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g 281 (563)
.+..++...+.....++.....+...+-++.....-+..
T Consensus 17 ~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 55 (284)
T 1c1g_A 17 NALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATED 55 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333
No 2
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=98.53 E-value=0.00027 Score=63.70 Aligned_cols=13 Identities=0% Similarity=0.097 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHH
Q 008522 546 LATQRELIQKQVL 558 (563)
Q Consensus 546 La~ERErL~~Qis 558 (563)
+..+.+.+..+++
T Consensus 270 ~~~~~~~~~~~L~ 282 (284)
T 1c1g_A 270 ISEELDHALNDMT 282 (284)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 3344444444443
No 3
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.10 E-value=2.4e-06 Score=98.41 Aligned_cols=20 Identities=5% Similarity=0.116 Sum_probs=0.0
Q ss_pred hhhhhhhhhHHhHHHHHHHh
Q 008522 498 FELKNKQSFMRDKIKILESS 517 (563)
Q Consensus 498 ~eLneELsflrsk~~~LE~s 517 (563)
.+|..++.-++.+++.+...
T Consensus 1147 ~~L~~ele~L~~~Ieel~~v 1166 (1184)
T 1i84_S 1147 RDLSEELEALKTELEDTLDT 1166 (1184)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHHHHHHhhH
Confidence 34455555555555554433
No 4
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.04 E-value=6e-06 Score=95.12 Aligned_cols=62 Identities=16% Similarity=0.194 Sum_probs=0.0
Q ss_pred HHHhhHHHHHHHHHHhhhhhhhhchhhhhhhcccccchhhhhhhhhhHHhHHHHHHHhHHHH
Q 008522 460 SAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRA 521 (563)
Q Consensus 460 sti~DME~vIedLksKv~kaE~rae~~E~kc~~LsEtN~eLneELsflrsk~~~LE~sL~~A 521 (563)
..+.+++.-+.+++.++...+.+.+.+..+.--+...-..+..++.-++.+++.|+..|...
T Consensus 1074 ~el~el~~el~~le~~l~~le~el~~l~~~le~l~~~~~~le~~l~~Le~eie~L~eeLee~ 1135 (1184)
T 1i84_S 1074 EQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESE 1135 (1184)
T ss_dssp --------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555555444444444444444455555555666666555555443
No 5
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=97.69 E-value=0.00037 Score=65.00 Aligned_cols=125 Identities=23% Similarity=0.290 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHhhhhhhhHHHHHHHhhhhcCCC
Q 008522 342 KVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNND 421 (563)
Q Consensus 342 Kv~sLEeQLkese~Ql~~akas~ea~~~~isdmEn~IedLK~kvskAESRAe~AEskc~lLteTN~EL~eEL~~Lks~~s 421 (563)
++..||.||++. ...|.-..+ +++- +-..+.+||.|++.|++||..|-+.--....-|..|.-+..
T Consensus 1 r~~~lE~qlkea---ae~ad~Kye----EvaR-------~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~see 66 (155)
T 2efr_A 1 RMKQLEDKVEEL---LSKNYHLEN----EVAR-------LKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAE 66 (155)
T ss_dssp CHHHHHHHHHHH---HHHHHHHHH----HHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH---HHHhHHHHH----HHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhh
Confidence 367889999987 222222211 2222 77788899999999999999877654444444444433322
Q ss_pred CcchhhhhhHHHHhhHHHHHHHhHhhhhhhHHHHHhHHHHHhhHHHHHHHHHHhhhhhh
Q 008522 422 SNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAE 480 (563)
Q Consensus 422 s~~ek~~~LE~qLkese~QLqhA~As~eAs~eqQ~ml~sti~DME~vIedLksKv~kaE 480 (563)
..++|-..+|.+|+.+..+|..|..-++...-.=..|-.+|.|+|.-+..-|.|+....
T Consensus 67 kasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~ 125 (155)
T 2efr_A 67 KYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAIS 125 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23344555555555555555444433333222222333344444443333344433333
No 6
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=96.92 E-value=0.045 Score=51.10 Aligned_cols=81 Identities=30% Similarity=0.304 Sum_probs=70.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHhhhhhhhHHHHHHHhhhh
Q 008522 338 TMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLK 417 (563)
Q Consensus 338 sL~eKv~sLEeQLkese~Ql~~akas~ea~~~~isdmEn~IedLK~kvskAESRAe~AEskc~lLteTN~EL~eEL~~Lk 417 (563)
+...|+..||+.|+-.+-.+.+..++.+...++...++.-|..|..++-.||.||+-|+..+..|-.+...|-.+|..-|
T Consensus 39 ~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~K 118 (155)
T 2efr_A 39 LSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQK 118 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44568889999999888888888888888888889999999999999999999999999999999888888888776544
Q ss_pred c
Q 008522 418 G 418 (563)
Q Consensus 418 s 418 (563)
.
T Consensus 119 e 119 (155)
T 2efr_A 119 L 119 (155)
T ss_dssp H
T ss_pred H
Confidence 4
No 7
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=96.43 E-value=0.024 Score=52.22 Aligned_cols=142 Identities=24% Similarity=0.266 Sum_probs=94.7
Q ss_pred HHhhhhHHhhhcccchhchhHHHHHHHhHHHHHhhhhHHHHHhhhcCchhhhhHHHHHHHHHHHHHHHHHHHhhhhhchh
Q 008522 286 MLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQ 365 (563)
Q Consensus 286 l~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~Lekl~~s~~SE~~sL~eKv~sLEeQLkese~Ql~~akas~e 365 (563)
|.-|++.++-+|.-+.-|=.....||..+.......+....-|+.. ...--+|+..||.||++.......|.-..+
T Consensus 1 l~Rri~llEeeLer~eerl~~a~~kLeeaek~adE~eR~~k~lE~r----~~~deEr~~~lE~qLkeak~~aeeadrKye 76 (147)
T 2b9c_A 1 MNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESR----AQKDEEKMEIQEIQLKEAKHIAEDADRKYE 76 (147)
T ss_dssp ----------CCGGGGTTTTHHHHHHHHHHHHHHHHTHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hcccHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3467888888888888887777888877776666655555555543 224567899999999988877776665544
Q ss_pred hhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHhhhhhhhHHHHHHHhhhhcCCCCcchhhhhhHHHHhhHH
Q 008522 366 TSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLE 438 (563)
Q Consensus 366 a~~~~isdmEn~IedLK~kvskAESRAe~AEskc~lLteTN~EL~eEL~~Lks~~ss~~ek~~~LE~qLkese 438 (563)
...-++. -+-..+.+||.|++.|+++|..|-+.--.+..-|..|.-+....+.|-...|.+|+.+.
T Consensus 77 E~~RKl~-------~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE~~eekas~rE~~yee~I~~L~ 142 (147)
T 2b9c_A 77 EVARKLV-------IIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEDKVEELLSKNYHLENEVARLK 142 (147)
T ss_dssp HHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTSC
T ss_pred HHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHH
Confidence 4333433 34455669999999999999998887777777777777776555677777777777653
No 8
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=94.51 E-value=0.78 Score=44.51 Aligned_cols=95 Identities=7% Similarity=0.127 Sum_probs=57.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHhhhhhhhHH---HHHHHh
Q 008522 338 TMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLE---LSEEIN 414 (563)
Q Consensus 338 sL~eKv~sLEeQLkese~Ql~~akas~ea~~~~isdmEn~IedLK~kvskAESRAe~AEskc~lLteTN~E---L~eEL~ 414 (563)
.|...|..|+..+.....++..+....+....++...++-|.+++.++.+.+.+..++ .+|-+ |..|+.
T Consensus 29 ~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v--------~~~kE~~aL~kEie 100 (256)
T 3na7_A 29 EKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEI--------KSERELRSLNIEED 100 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------SSSSHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--------CCHHHHHHHHHHHH
Confidence 4455666666666666666666666655555566666666666666666655554321 24543 455777
Q ss_pred hhhcCCCCcchhhhhhHHHHhhHHHHHHHhHhh
Q 008522 415 FLKGNNDSNTKKVGILENQLRDLEIQLQQAKVS 447 (563)
Q Consensus 415 ~Lks~~ss~~ek~~~LE~qLkese~QLqhA~As 447 (563)
+++. +...||..+.+...+++...+.
T Consensus 101 ~~~~-------~i~~lE~eile~~e~ie~~~~~ 126 (256)
T 3na7_A 101 IAKE-------RSNQANREIENLQNEIKRKSEK 126 (256)
T ss_dssp HHHH-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 7765 4778888887776655554433
No 9
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=94.44 E-value=1.2 Score=42.21 Aligned_cols=74 Identities=15% Similarity=0.219 Sum_probs=55.6
Q ss_pred CCcchhhhhhHHHHhhHHHHHHHhHhhhhhhHHHHHhHHHHHhhHHHHHHHHHHhhhhhhhhchhhhhhhcccc
Q 008522 421 DSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLS 494 (563)
Q Consensus 421 ss~~ek~~~LE~qLkese~QLqhA~As~eAs~eqQ~ml~sti~DME~vIedLksKv~kaE~rae~~E~kc~~Ls 494 (563)
+..++|+..||+||.+.+..|..=.-++.-.+-+|..+--++...|..+-||+.++..+++.-+.++..|+.|-
T Consensus 2 ~~~neKi~~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQ 75 (168)
T 3o0z_A 2 SLANEKLSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQ 75 (168)
T ss_dssp --------CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33679999999999999988876555555556678888889999999999999999999998888888887664
No 10
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=93.95 E-value=2 Score=41.56 Aligned_cols=109 Identities=12% Similarity=0.169 Sum_probs=49.1
Q ss_pred hhhHHhhhcccchhchhHHHHHHHhHHHHHhhhhHHHHHhhhc---CchhhhhHHHHHHHHHHHHHHHHHHHhhhhhchh
Q 008522 289 RFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLEST---KNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQ 365 (563)
Q Consensus 289 kLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~Lekl~~s---~~SE~~sL~eKv~sLEeQLkese~Ql~~akas~e 365 (563)
.||.+-..+.....+=..+...+......+......+..+... -..+...+...+..+...++.+..|+.+++
T Consensus 12 ~LQ~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~---- 87 (256)
T 3na7_A 12 EISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIK---- 87 (256)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS----
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC----
Confidence 4555555555555555555555555555544444444333322 122233333333444444444444443333
Q ss_pred hhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHhhh
Q 008522 366 TSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQL 402 (563)
Q Consensus 366 a~~~~isdmEn~IedLK~kvskAESRAe~AEskc~lL 402 (563)
...++.++..-|+.++..+..+|.+......+..-+
T Consensus 88 -~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~ 123 (256)
T 3na7_A 88 -SERELRSLNIEEDIAKERSNQANREIENLQNEIKRK 123 (256)
T ss_dssp -SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112444555555555555555555554444444433
No 11
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=92.82 E-value=0.3 Score=44.94 Aligned_cols=128 Identities=19% Similarity=0.273 Sum_probs=75.6
Q ss_pred HhhhhhhhhHHHHHhhhhhhhHHHHHHHhhhhcCCCCcchhhhhhHHHHhhHHHHHHHhHhhhhhhHHHHHhHHHHHhhH
Q 008522 386 YGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDM 465 (563)
Q Consensus 386 skAESRAe~AEskc~lLteTN~EL~eEL~~Lks~~ss~~ek~~~LE~qLkese~QLqhA~As~eAs~eqQ~ml~sti~DM 465 (563)
.+|+.|...|-.|+.-.+.+-.+-..-...|-.+.....+|+..||.+|++.....+. .-- .| ...
T Consensus 13 er~eerl~~a~~kLeeaek~adE~eR~~k~lE~r~~~deEr~~~lE~qLkeak~~aee-------adr----Ky---eE~ 78 (147)
T 2b9c_A 13 DRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAED-------ADR----KY---EEV 78 (147)
T ss_dssp GGGGTTTTHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHH----HH---HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHH-------HHH----hH---HHH
Confidence 3444444444444444444443333334444333222346777777777765332222 211 12 222
Q ss_pred HHHHHHHHHhhhhhhhhchhhhhhhcccccchhhhhhhhhhHHhHHHHHHHhHHHHHHHHHhhHHHHHH
Q 008522 466 ETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNH 534 (563)
Q Consensus 466 E~vIedLksKv~kaE~rae~~E~kc~~LsEtN~eLneELsflrsk~~~LE~sL~~A~~~K~~TakdI~~ 534 (563)
..=+.-+-..+..++.|++.++.+|. +|-++|......+++||.+=..|...-...-..|..
T Consensus 79 ~RKl~~~E~dLeraeeRae~aE~k~~-------eLEeeL~~~~~nlKsLE~~eekas~rE~~yee~I~~ 140 (147)
T 2b9c_A 79 ARKLVIIESDLERAEERAELSEGKCA-------ELEEELKTVTNNLKSLEDKVEELLSKNYHLENEVAR 140 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHH
Confidence 22333445566788888888888886 788899999999999999988888776666665543
No 12
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=92.14 E-value=3.6 Score=38.97 Aligned_cols=21 Identities=33% Similarity=0.468 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 008522 339 MKEKVKSLEEQLKESEIRLQN 359 (563)
Q Consensus 339 L~eKv~sLEeQLkese~Ql~~ 359 (563)
..+|+..||+||.+.+..+..
T Consensus 4 ~neKi~~LekQL~E~n~kLk~ 24 (168)
T 3o0z_A 4 ANEKLSQLQKQLEEANDLLRT 24 (168)
T ss_dssp ------CTHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999887653
No 13
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=92.08 E-value=5.5 Score=51.44 Aligned_cols=47 Identities=17% Similarity=0.210 Sum_probs=27.0
Q ss_pred HHHHHhHHHHHhhhhHHHHHhhhcCchhhhhHHHHHHHHHHHHHHHHH
Q 008522 308 KSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEI 355 (563)
Q Consensus 308 ~sKL~~~~eqL~~k~~~Lekl~~s~~SE~~sL~eKv~sLEeQLkese~ 355 (563)
..|-+...++...-..=|+||.++ ...|-.|+.++..++.+|.+...
T Consensus 1909 ~~K~~el~~~~~rl~~GL~KL~et-~~~V~~l~~~L~~~~~~L~~k~~ 1955 (3245)
T 3vkg_A 1909 NEKRDQLEEEQLHLNIGLKKLRDT-EAQVKDLQVSLAQKNRELDVKNE 1955 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555557778888887 45555555555555555544433
No 14
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=89.38 E-value=3.1 Score=35.72 Aligned_cols=53 Identities=9% Similarity=0.273 Sum_probs=38.1
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHH
Q 008522 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESL 385 (563)
Q Consensus 333 ~SE~~sL~eKv~sLEeQLkese~Ql~~akas~ea~~~~isdmEn~IedLK~kv 385 (563)
..|+.+|+.|++.+|..|-.++.++..+....+......++.|.-+..|..+|
T Consensus 43 E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~Rri 95 (101)
T 3u1c_A 43 EDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRI 95 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888999999999999998888888777666555555555555555554443
No 15
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=89.20 E-value=16 Score=47.43 Aligned_cols=85 Identities=12% Similarity=0.120 Sum_probs=57.6
Q ss_pred HHHHHhhhhhhhhchhhhhhhcccccchhhhhhhhhhHHhHHHHHHHhHHHHHHHHHhhHHHHH---HHhHHHHHHHHHH
Q 008522 470 EDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVN---HRTKLMMEMVMQL 546 (563)
Q Consensus 470 edLksKv~kaE~rae~~E~kc~~LsEtN~eLneELsflrsk~~~LE~sL~~A~~~K~~TakdI~---~~tK~i~dLv~qL 546 (563)
+=++.++..||.+.+.++.+- .+...+|+-+..++..|+....++..+|..--.++. .+-...+.|+..|
T Consensus 2010 ~Pkr~~l~~ae~~l~~~~~~L-------~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL 2082 (3245)
T 3vkg_A 2010 GPLREEVEQLENAANELKLKQ-------DEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNL 2082 (3245)
T ss_dssp -CHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445556666665543333322 134567777888888888888888888866544443 4456678999999
Q ss_pred HHHHHHHHHHHHHhh
Q 008522 547 ATQRELIQKQVLILL 561 (563)
Q Consensus 547 a~ERErL~~Qissl~ 561 (563)
+.|+.|=..++..+.
T Consensus 2083 ~~Ek~RW~~~~~~l~ 2097 (3245)
T 3vkg_A 2083 NSERGRWEQQSENFN 2097 (3245)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hhccccHHHHHHHHH
Confidence 999999888877653
No 16
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=86.83 E-value=12 Score=33.08 Aligned_cols=48 Identities=21% Similarity=0.336 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHhhhhhhhhchhhhhhhcccccchhhhhhhhhhHHhHHHHHHHhH
Q 008522 464 DMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSL 518 (563)
Q Consensus 464 DME~vIedLksKv~kaE~rae~~E~kc~~LsEtN~eLneELsflrsk~~~LE~sL 518 (563)
+|+..|.++.+.+.. .++.+.-|+..--+|..+++-|+..+.++|..+
T Consensus 80 eLe~~l~el~~rlee-------eee~~~~L~~~kkkle~e~~~Lk~~led~e~~l 127 (129)
T 2fxo_A 80 QLEAKVKEMNKRLED-------EEEMNAELTAKKRKLEDECSELKRDIDDLELTL 127 (129)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444445554444433 334455666666666666666666666665543
No 17
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=86.58 E-value=14 Score=35.54 Aligned_cols=145 Identities=19% Similarity=0.159 Sum_probs=94.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhcccchhchhHHHHHHHhHHHHHhhhhHHHHHhh
Q 008522 250 HTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLE 329 (563)
Q Consensus 250 ~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~Lekl~ 329 (563)
+.+++..+.-+.+..+..++.+++.-..=|..-|+++=.= ++-.|.++..|.++|++++.....
T Consensus 7 s~~ee~~ywk~~~~~~~q~~~~le~El~EFqesSrELE~E---LE~eL~~~Ek~~~~L~~~~~~L~~------------- 70 (189)
T 2v71_A 7 SLKEETAYWKELSMKYKQSFQEARDELVEFQEGSRELEAE---LEAQLVQAEQRNRDLQADNQRLKY------------- 70 (189)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH-------------
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH-------------
Confidence 3455666666677777788888888888888888887654 356777788888888877765553
Q ss_pred hcCchhhhhHHHHHHHHHHH----HHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHhhhhhh
Q 008522 330 STKNSEVLTMKEKVKSLEEQ----LKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDT 405 (563)
Q Consensus 330 ~s~~SE~~sL~eKv~sLEeQ----Lkese~Ql~~akas~ea~~~~isdmEn~IedLK~kvskAESRAe~AEskc~lLteT 405 (563)
|+.++..|....-.+ +...+-++.......+.....|.++|-.+.||-.+.-.+.+-.+--++|.-..-+.
T Consensus 71 -----E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr 145 (189)
T 2v71_A 71 -----EVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIER 145 (189)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 334444444443222 33333334444444555666778888888888877777777777777776666666
Q ss_pred hHHHHHHHhh
Q 008522 406 NLELSEEINF 415 (563)
Q Consensus 406 N~EL~eEL~~ 415 (563)
|+=|..||..
T Consensus 146 ~alLE~El~E 155 (189)
T 2v71_A 146 NAFLESELDE 155 (189)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666666553
No 18
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=86.25 E-value=16 Score=32.28 Aligned_cols=82 Identities=16% Similarity=0.197 Sum_probs=59.0
Q ss_pred HhhHHHHHHHHHHhhhhhhhhchhhhhhhcccccchhhhhhhhhhHHhHHHHHHHhHHHHHHHHHhhHHHHHHHhHHHHH
Q 008522 462 IWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMME 541 (563)
Q Consensus 462 i~DME~vIedLksKv~kaE~rae~~E~kc~~LsEtN~eLneELsflrsk~~~LE~sL~~A~~~K~~TakdI~~~tK~i~d 541 (563)
...+..=+.+|+..+.-....+..+++.|..|.....+|...|.-+..|+++.|.........|...-.++.-.++-|.|
T Consensus 43 ~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led 122 (129)
T 2fxo_A 43 MVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDD 122 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555555554444556677889999999999999999999999988888888888877777777666666666
Q ss_pred HH
Q 008522 542 MV 543 (563)
Q Consensus 542 Lv 543 (563)
+-
T Consensus 123 ~e 124 (129)
T 2fxo_A 123 LE 124 (129)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 19
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=86.25 E-value=3.6 Score=47.90 Aligned_cols=82 Identities=12% Similarity=0.179 Sum_probs=24.3
Q ss_pred hhhHHHHhhhhHHhhhcccchhchhHHHHHHHhHHHHHhhhhH----HHHHhhhcCchhhhhHHHHHHHHHHHHHHHHHH
Q 008522 281 GISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDM----VLQKLESTKNSEVLTMKEKVKSLEEQLKESEIR 356 (563)
Q Consensus 281 g~skel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~----~Lekl~~s~~SE~~sL~eKv~sLEeQLkese~Q 356 (563)
.....+..++..+|-.|.....+=.+|..++....+.+...-. .++.++.. ..|...+..+|.+|++++.+.+.+
T Consensus 921 ~~~~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~~le~~-~~e~~~~~~~v~~L~~e~~~l~~~ 999 (1080)
T 2dfs_A 921 KLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMS-EEEAKNATNRVLSLQEEIAKLRKE 999 (1080)
T ss_dssp ------------------------------CHHHHHHHHHHHHHHHHTHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555555544444444444444333333222111 12222222 455556666666666666666666
Q ss_pred Hhhhhhc
Q 008522 357 LQNANAC 363 (563)
Q Consensus 357 l~~akas 363 (563)
++.+...
T Consensus 1000 ~~~~~ke 1006 (1080)
T 2dfs_A 1000 LHQTQTE 1006 (1080)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5544433
No 20
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=85.47 E-value=5.7 Score=46.30 Aligned_cols=56 Identities=14% Similarity=0.293 Sum_probs=29.8
Q ss_pred HHHhhHHHHHHHHHHhhhhhhhhchhhhhhhcccc----cchhhhhhhhhhHHhHHHHHH
Q 008522 460 SAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLS----EDNFELKNKQSFMRDKIKILE 515 (563)
Q Consensus 460 sti~DME~vIedLksKv~kaE~rae~~E~kc~~Ls----EtN~eLneELsflrsk~~~LE 515 (563)
..++.++.-|++|...+.++.++.+.+|+++.-+. +.-..|.+|.+.||..+.+|+
T Consensus 984 ~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 984 NRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44666666666666666666666666666654443 222233444444444444444
No 21
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=81.00 E-value=24 Score=30.17 Aligned_cols=67 Identities=21% Similarity=0.191 Sum_probs=56.1
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHhhhhhhhHHHHHHHhhhhcCCCCcchhhhhhHHHHhhHHHHHHHhHhhhhh
Q 008522 377 FIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEA 450 (563)
Q Consensus 377 ~IedLK~kvskAESRAe~AEskc~lLteTN~EL~eEL~~Lks~~ss~~ek~~~LE~qLkese~QLqhA~As~eA 450 (563)
=+.-||....+|..||+.++.+++.+...+.++-.++..|.- |...||..|-.+..+|..|....+.
T Consensus 10 Km~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~k-------k~~~lE~eld~~ee~L~ea~~kLee 76 (101)
T 3u1c_A 10 KMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEK-------QLRVTEDSRDQVLEELHKSEDSLLF 76 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356678888899999999999999999999999999999876 5788888888888888777654443
No 22
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=80.68 E-value=31 Score=35.95 Aligned_cols=26 Identities=38% Similarity=0.521 Sum_probs=17.4
Q ss_pred hhhhhhhhhhHHhHHHHHHHhHHHHH
Q 008522 497 NFELKNKQSFMRDKIKILESSLNRAN 522 (563)
Q Consensus 497 N~eLneELsflrsk~~~LE~sL~~A~ 522 (563)
-.++.+|+.-++.+++.|+.++..-.
T Consensus 560 ~~~l~~e~~~~~~~~~~l~~~~~~~~ 585 (597)
T 3oja_B 560 QAELRQETSLKRQKVKQLEAKKNRNP 585 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 35677777778888888888776543
No 23
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=79.74 E-value=45 Score=32.04 Aligned_cols=36 Identities=19% Similarity=0.147 Sum_probs=19.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHH
Q 008522 334 SEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQE 369 (563)
Q Consensus 334 SE~~sL~eKv~sLEeQLkese~Ql~~akas~ea~~~ 369 (563)
|-|-+..+.+.-.-.....+..++..+.+..+.+++
T Consensus 3 ~~f~s~~ee~~ywk~~~~~~~q~~~~le~El~EFqe 38 (189)
T 2v71_A 3 MDFSSLKEETAYWKELSMKYKQSFQEARDELVEFQE 38 (189)
T ss_dssp -CCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555566666666655554
No 24
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=79.49 E-value=5.3 Score=35.30 Aligned_cols=82 Identities=20% Similarity=0.214 Sum_probs=45.9
Q ss_pred hhHHHHHHHhhhhcCCCCcchhhhhhHHHHhhHHHHHHHhHhhhhhhHHHHHhHHHHHhhHHHHHHHHHHhhhhhhhhch
Q 008522 405 TNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTE 484 (563)
Q Consensus 405 TN~EL~eEL~~Lks~~ss~~ek~~~LE~qLkese~QLqhA~As~eAs~eqQ~ml~sti~DME~vIedLksKv~kaE~rae 484 (563)
+=..|..||..+++. -.+||++|.+.+.+... .+.|+...|.+|..-+..+.....
T Consensus 44 ~iq~L~~el~~l~~~-------~~~LE~~l~e~e~~~~~-----------------~l~~~q~~i~~lE~eL~~~r~e~~ 99 (129)
T 3tnu_B 44 MIQRLRAEIDNVKKQ-------CANLQNAIADAEQRGEL-----------------ALKDARNKLAELEEALQKAKQDMA 99 (129)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhH-------HHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHhHHHHHHHHH
Confidence 334566778888875 56788888876533222 234444444444444444443333
Q ss_pred hhhhhhcccccchhhhhhhhhhHHhH
Q 008522 485 SVEEQCIVLSEDNFELKNKQSFMRDK 510 (563)
Q Consensus 485 ~~E~kc~~LsEtN~eLneELsflrsk 510 (563)
.-=..+-.|=..-+-|.-||+-||.=
T Consensus 100 ~ql~EYq~LlnvKl~Ld~EIatYRkL 125 (129)
T 3tnu_B 100 RLLREYQELMNTKLALDVEIATYRKL 125 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 32222344555666677888888753
No 25
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=78.34 E-value=6.3 Score=32.40 Aligned_cols=61 Identities=26% Similarity=0.284 Sum_probs=41.5
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHhhhhhhhHHHHHHHhhhhcCCCCcchhhhhhHHHHhhHHHHHHHhH
Q 008522 378 IESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAK 445 (563)
Q Consensus 378 IedLK~kvskAESRAe~AEskc~lLteTN~EL~eEL~~Lks~~ss~~ek~~~LE~qLkese~QLqhA~ 445 (563)
+.-||....+|..|++.++.++......+.++..++..|.- |...||..|..++.+|..|.
T Consensus 8 m~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~k-------Kiq~lE~eld~~ee~l~~a~ 68 (81)
T 1ic2_A 8 MQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQK-------KLKGTEDELDKYSESLKDAQ 68 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 34556666677777777777777777777777777777765 46677777666665555443
No 26
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=77.99 E-value=10 Score=32.34 Aligned_cols=62 Identities=27% Similarity=0.246 Sum_probs=51.7
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHhhhhhhhHHHHHHHhhhhcCCCCcchhhhhhHHHHhhHHHHHHHhHh
Q 008522 378 IESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKV 446 (563)
Q Consensus 378 IedLK~kvskAESRAe~AEskc~lLteTN~EL~eEL~~Lks~~ss~~ek~~~LE~qLkese~QLqhA~A 446 (563)
+.-||....+|..||+.++.+++.+...+.++..++..|+- |...||..+..+..+|..|..
T Consensus 11 m~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~k-------Kiq~lE~eld~~~e~l~~a~~ 72 (101)
T 3u59_A 11 MQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQK-------KLKGTEDEVEKYSESVKEAQE 72 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 56678888999999999999999999999999999999876 477788887777666665553
No 27
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=77.09 E-value=16 Score=38.11 Aligned_cols=57 Identities=14% Similarity=0.061 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHHHhhhhhhhhHHHHHhhhhhhhHHHHHHHhhhhcCCCCcchhhhhhHHHHhhH
Q 008522 374 MDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDL 437 (563)
Q Consensus 374 mEn~IedLK~kvskAESRAe~AEskc~lLteTN~EL~eEL~~Lks~~ss~~ek~~~LE~qLkes 437 (563)
+....+.++..+.+.+.|.+..+.++..+...-.+.++++..++.. ...+|+++++-
T Consensus 500 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~le~~~~~~ 556 (597)
T 3oja_B 500 LARSSDNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQE-------NIALEKQLDNK 556 (597)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhh-------hHHHHHHHhhh
Confidence 3334455555555666666666666665555555555555444442 44455554443
No 28
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=76.08 E-value=6.2 Score=34.97 Aligned_cols=93 Identities=14% Similarity=0.211 Sum_probs=47.9
Q ss_pred HHHHHhhhhhhhHHHHHHHhhhhcCCCCcchhhhhhHHHHhhHHHHHHHhHhhhhhhHHHHHhHHHHHhhHHHHHHHHHH
Q 008522 395 AEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKS 474 (563)
Q Consensus 395 AEskc~lLteTN~EL~eEL~~Lks~~ss~~ek~~~LE~qLkese~QLqhA~As~eAs~eqQ~ml~sti~DME~vIedLks 474 (563)
+...+.-|..+=..|.-||..+++. -.+||++|.+.+.+... .+.|+...|.+|..
T Consensus 36 ~k~Ei~elrr~iq~L~~el~~l~~~-------~~sLE~~l~e~e~~~~~-----------------~l~~~q~~i~~lE~ 91 (131)
T 3tnu_A 36 GKSEISELRRTMQNLEIELQSQLSM-------KASLENSLEETKGRYCM-----------------QLAQIQEMIGSVEE 91 (131)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-------HHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHH
Confidence 3333333333334566677778775 56788888876533322 23344444444444
Q ss_pred hhhhhhhhchhhhhhhcccccchhhhhhhhhhHHhHH
Q 008522 475 KVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKI 511 (563)
Q Consensus 475 Kv~kaE~rae~~E~kc~~LsEtN~eLneELsflrsk~ 511 (563)
-+..+.......=..+-.|-..-+-|.-||+-||.=+
T Consensus 92 eL~~~r~em~~ql~EYq~Ll~vKl~Ld~EIatYRkLL 128 (131)
T 3tnu_A 92 QLAQLRCEMEQQNQEYKILLDVKTRLEQEIATYRRLL 128 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 4444433322222224445556666778888887543
No 29
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=75.73 E-value=24 Score=37.92 Aligned_cols=103 Identities=11% Similarity=0.181 Sum_probs=66.1
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhHHHHHhhhhhhhHHHHHHHhhhhcCCCCcchhhhhhHHHHhhHHHHHHHhHhhhhhhH
Q 008522 373 EMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQ 452 (563)
Q Consensus 373 dmEn~IedLK~kvskAESRAe~AEskc~lLteTN~EL~eEL~~Lks~~ss~~ek~~~LE~qLkese~QLqhA~As~eAs~ 452 (563)
..+.-|++||..+...+.++..|+.-...|..+-.+....+ ..++..++++..++++..+.+....
T Consensus 97 ~V~~~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi--------------~en~n~~~~~~~~~e~~~~~i~~~~ 162 (464)
T 1m1j_B 97 TVKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQR--------------KDNDIILSEYNTEMELHYNYIKDNL 162 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccccc--------------cchhhHHHHHHHHHHHHHHHHHHHH
Confidence 45666888888888888777777777666655544444333 3334455555555555555544333
Q ss_pred HHHHhHHHHHhhHHHHHHHHHHhhhhhhhhchhhhhhhc
Q 008522 453 EQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCI 491 (563)
Q Consensus 453 eqQ~ml~sti~DME~vIedLksKv~kaE~rae~~E~kc~ 491 (563)
.++ .-+.|..+..+|+.|+.|+.+.+........+|.
T Consensus 163 ~~~--~~~~i~~L~~~~~~l~~ki~~l~~~~~~~~~~~~ 199 (464)
T 1m1j_B 163 DNN--IPSSLRVLRAVIDSLHKKIQKLENAIATQTDYCR 199 (464)
T ss_dssp HTH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hcc--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 211 2456788888888888888888877666666664
No 30
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=75.51 E-value=2.9 Score=37.11 Aligned_cols=75 Identities=23% Similarity=0.290 Sum_probs=49.9
Q ss_pred HhhhhHHHHhhhhHHhhhcccchhchhHHHHHHHhHHHHHhhh--hHHHHHhhhcCchhhhhHHHHHHHHHHHHHHHH
Q 008522 279 LMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAK--DMVLQKLESTKNSEVLTMKEKVKSLEEQLKESE 354 (563)
Q Consensus 279 L~g~skel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k--~~~Lekl~~s~~SE~~sL~eKv~sLEeQLkese 354 (563)
|.||-+-+.+-++-+|-.++.-...=..-+-||++++.+-+.- +.....+.. +.++|.+|++|+..|.+||.+.-
T Consensus 26 ~~~~~~~tM~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~DPDevNK~tl~~-R~~~Vsalq~KiaeLKrqLAd~v 102 (107)
T 2k48_A 26 FQGIDPFTMSTLQELQENITAHEQQLVTARQKLKDAEKAVEVDPDDVNKSTLQN-RRAAVSTLETKLGELKRQLADLV 102 (107)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555544444444567999999988864 333334444 57899999999999999888653
No 31
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=74.91 E-value=20 Score=30.49 Aligned_cols=49 Identities=14% Similarity=0.299 Sum_probs=28.4
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHH
Q 008522 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESL 381 (563)
Q Consensus 333 ~SE~~sL~eKv~sLEeQLkese~Ql~~akas~ea~~~~isdmEn~IedL 381 (563)
..|+.+|+.|++.||.++-.+..++..+....+.........|.-+..|
T Consensus 43 E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasL 91 (101)
T 3u59_A 43 EEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASL 91 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777777777766655555443333333333333333
No 32
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=74.81 E-value=20 Score=30.51 Aligned_cols=68 Identities=16% Similarity=0.203 Sum_probs=44.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhh-hHHHHHHHHHHHHhhhhhhhhHHHHHhhhhhhh
Q 008522 336 VLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNE-MDNFIESLKESLYGAESRAESAEEKVTQLTDTN 406 (563)
Q Consensus 336 ~~sL~eKv~sLEeQLkese~Ql~~akas~ea~~~~isd-mEn~IedLK~kvskAESRAe~AEskc~lLteTN 406 (563)
+-+--+||..||.|=+..+.++...... ..+.+.. .+..|.+|+.+|..+-.--...+.+..-|.+.-
T Consensus 18 lAsyIdKVR~LEqqN~~Le~~i~~l~~~---~~~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~ 86 (93)
T 3s4r_A 18 FANLIDKVRFLEQQNKILLAELEQLKGQ---GKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDI 86 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc---cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466789999999999988887655433 1223444 488888888888877655555555444443333
No 33
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=72.22 E-value=9.3 Score=34.19 Aligned_cols=104 Identities=27% Similarity=0.341 Sum_probs=47.9
Q ss_pred ccchhchhH-HHHHHHhHHHHHhhhhHHHHHhhhcCchhhhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhh--
Q 008522 298 NGSLQRESE-LKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEM-- 374 (563)
Q Consensus 298 ~as~~REse-l~sKL~~~~eqL~~k~~~Lekl~~s~~SE~~sL~eKv~sLEeQLkese~Ql~~akas~ea~~~~isdm-- 374 (563)
+|+..-+.| +..-|+.-++.|. ..++.+....-+.+..|...|..||-+|.+..-+.+.|....+....++.++
T Consensus 6 ~~~~~d~rD~~Ie~Lkreie~lk---~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~~ 82 (120)
T 3i00_A 6 NGVNKDEKDHLIERLYREISGLK---AQLENMKTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELRR 82 (120)
T ss_dssp ----CCTHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCcHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444434444 5555666655554 4455555444688889999999999999999888888877766554444333
Q ss_pred -HHHHHHHHHHHHhhhhhhhhHHHHHhhhhh
Q 008522 375 -DNFIESLKESLYGAESRAESAEEKVTQLTD 404 (563)
Q Consensus 375 -En~IedLK~kvskAESRAe~AEskc~lLte 404 (563)
-..-..+..++-.||-||+.+|.+..-|-+
T Consensus 83 ~~~~~~~~q~~~~e~E~kAqa~Eerf~KLKe 113 (120)
T 3i00_A 83 QREDTEKAQRSLSEIERKAQANEQRYSKLKE 113 (120)
T ss_dssp TCC----------------------------
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333455577788999999999988766543
No 34
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=67.32 E-value=14 Score=37.81 Aligned_cols=71 Identities=25% Similarity=0.313 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHhhhhhhhhHHHHHhhhhhhhHHHHHHHhhhhcCCCCcchhhhhhHHHHhhHHHHHHHhHhhhh
Q 008522 376 NFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSE 449 (563)
Q Consensus 376 n~IedLK~kvskAESRAe~AEskc~lLteTN~EL~eEL~~Lks~~ss~~ek~~~LE~qLkese~QLqhA~As~e 449 (563)
|+..-|-.++.+++-.-.+++.+..--..|=+-|.+-|..-++++- +|+.-||+++++.+.+|+.+.|.++
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (471)
T 3mq9_A 397 NVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQ---KKVEELEGEITTLNHKLQDASAEVE 467 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444455555544444554444445666677777776666643 6899999999999999999888665
No 35
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=67.11 E-value=24 Score=28.93 Aligned_cols=69 Identities=20% Similarity=0.245 Sum_probs=28.0
Q ss_pred HHhhhHHHHHHHHHHHHhhhhhhhhHHHHHhhhhhhhHHHHHHHhhhhcCCCCcchhhhhhHHHHhhHHHHHHHhH
Q 008522 370 QLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAK 445 (563)
Q Consensus 370 ~isdmEn~IedLK~kvskAESRAe~AEskc~lLteTN~EL~eEL~~Lks~~ss~~ek~~~LE~qLkese~QLqhA~ 445 (563)
+|..|.+-.+...+++..|+.....++.++..+.+.-..|+..+..|... +...+.+|......|+.|.
T Consensus 7 Km~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~e-------ld~~ee~l~~a~~kLeeae 75 (81)
T 1ic2_A 7 KMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDE-------LDKYSESLKDAQEKLELAD 75 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333333333332 3344444555555555544
No 36
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=64.25 E-value=16 Score=30.95 Aligned_cols=59 Identities=22% Similarity=0.262 Sum_probs=50.6
Q ss_pred HHHHhhHHHHHHHHHHhhhhhhhhchhhhhhhcccccchhhhhhhhhhHHhHHHHHHHh
Q 008522 459 YSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESS 517 (563)
Q Consensus 459 ~sti~DME~vIedLksKv~kaE~rae~~E~kc~~LsEtN~eLneELsflrsk~~~LE~s 517 (563)
..||.-+.--|++||.|-......++.+...-..|...|-.|.+|.+...+|+..|=++
T Consensus 19 vdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk 77 (81)
T 2jee_A 19 IDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGR 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66788888889999999988888878888888889999999999999999999877444
No 37
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=63.87 E-value=30 Score=28.96 Aligned_cols=27 Identities=33% Similarity=0.444 Sum_probs=19.1
Q ss_pred hhhHHHHHhhhhhhhHHHHHHHhhhhc
Q 008522 392 AESAEEKVTQLTDTNLELSEEINFLKG 418 (563)
Q Consensus 392 Ae~AEskc~lLteTN~EL~eEL~~Lks 418 (563)
...|+.+|..|.....+|...|..|..
T Consensus 58 l~eaEe~~~~L~~~K~eLE~~l~el~~ 84 (89)
T 3bas_A 58 MKQLEDKVEELLSKNYHLENEVARLKK 84 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777777777777666654
No 38
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=62.75 E-value=12 Score=31.58 Aligned_cols=67 Identities=21% Similarity=0.284 Sum_probs=47.3
Q ss_pred hhhhHHHHhhhhHHhhhcccchhchhHHHHHHHhHHHHHhhh--hHHHHHhhhcCchhhhhHHHHHHHHHHHHHHHH
Q 008522 280 MGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAK--DMVLQKLESTKNSEVLTMKEKVKSLEEQLKESE 354 (563)
Q Consensus 280 ~g~skel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k--~~~Lekl~~s~~SE~~sL~eKv~sLEeQLkese 354 (563)
|+..++++.-+...+..|.-+ +-||++++.+-+.- +.....+.. +.++|.+|.+|+..|.+||.+.-
T Consensus 4 M~~l~eLq~e~~~~E~QL~~A-------~QKLkdA~~~~e~DPDevNK~~~~~-R~~~V~~lq~Ki~elkrqlAd~v 72 (78)
T 2ic6_A 4 MSTLKEVQDNITLHEQRLVTT-------RQKLKDAERAVELDPDDVNKSTLQS-RRAAVSALETKLGELKRELADLI 72 (78)
T ss_dssp -CHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhcCCCcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777777777655 45899999888764 333333333 57899999999999998887653
No 39
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=61.76 E-value=18 Score=30.20 Aligned_cols=79 Identities=15% Similarity=0.176 Sum_probs=38.9
Q ss_pred HHHhhhhcCCCCcchhhhhhHHHHhhHHHHHHHhHhhhhhhHHHHHhHHHHHhhHHHHHHHHHHhhhhhhhhchhhhhhh
Q 008522 411 EEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQC 490 (563)
Q Consensus 411 eEL~~Lks~~ss~~ek~~~LE~qLkese~QLqhA~As~eAs~eqQ~ml~sti~DME~vIedLksKv~kaE~rae~~E~kc 490 (563)
.|+..|+++ ..+||++|.+.+.+... .+.++...|..|...+........+--...
T Consensus 3 ~eie~L~~q-------~~~Le~~l~e~E~~~~~-----------------~l~~~q~~i~~lE~el~~~r~e~~~ql~EY 58 (86)
T 1x8y_A 3 CQLSQLQCQ-------LAAKEAKLRDLEDSLAR-----------------ERDTSRRLLAEKEREMAEMRARMQQQLDEY 58 (86)
T ss_dssp ----------------CTTHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHH-------HHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788887 45789999887644322 233333444444444443333322222224
Q ss_pred cccccchhhhhhhhhhHHhHHHH
Q 008522 491 IVLSEDNFELKNKQSFMRDKIKI 513 (563)
Q Consensus 491 ~~LsEtN~eLneELsflrsk~~~ 513 (563)
-.|=..-+.|.-||+-||.=++.
T Consensus 59 q~LlnvK~~Le~EIatYRkLLEG 81 (86)
T 1x8y_A 59 QELLDIKLALDMEIHAYRKLLEG 81 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHcC
Confidence 45556667788899999876654
No 40
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=59.84 E-value=67 Score=28.15 Aligned_cols=78 Identities=26% Similarity=0.344 Sum_probs=38.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHH----H---HhhhHHHHHHHHHHHHhhhhhhhhHHHHHhhhhhhh
Q 008522 334 SEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQE----Q---LNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTN 406 (563)
Q Consensus 334 SE~~sL~eKv~sLEeQLkese~Ql~~akas~ea~~~----~---isdmEn~IedLK~kvskAESRAe~AEskc~lLteTN 406 (563)
++...|+.+|..+-..=.....++.++...++.+.. + -.++|+-|..||..+..|=-.--..|.++.
T Consensus 20 ~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~ie------ 93 (119)
T 3ol1_A 20 EEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVE------ 93 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHH------
Confidence 344445555555544444444555555444443322 1 225566666666555544333333333332
Q ss_pred HHHHHHHhhhhc
Q 008522 407 LELSEEINFLKG 418 (563)
Q Consensus 407 ~EL~eEL~~Lks 418 (563)
-|++||.|||.
T Consensus 94 -sL~eEl~FLKk 104 (119)
T 3ol1_A 94 -SLQEEIAFLKK 104 (119)
T ss_dssp -HHHHHHHHHHH
T ss_pred -HHHHHHHHHHH
Confidence 35678888875
No 41
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=56.20 E-value=42 Score=30.41 Aligned_cols=62 Identities=24% Similarity=0.305 Sum_probs=37.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHhhhhhhhHHHHHHH
Q 008522 334 SEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEI 413 (563)
Q Consensus 334 SE~~sL~eKv~sLEeQLkese~Ql~~akas~ea~~~~isdmEn~IedLK~kvskAESRAe~AEskc~lLteTN~EL~eEL 413 (563)
.|.+.+++++..|+.++. +++.-|.+||..+..+.-+.+.+..+..-|.+-|.+|.+++
T Consensus 68 dEl~k~~~~~~~L~~~l~---------------------~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~ 126 (138)
T 3hnw_A 68 DDYFKAKKMADSLSLDIE---------------------NKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNI 126 (138)
T ss_dssp HHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666655555 44555777777777777777777666665555555555444
Q ss_pred hhh
Q 008522 414 NFL 416 (563)
Q Consensus 414 ~~L 416 (563)
.-|
T Consensus 127 ~~l 129 (138)
T 3hnw_A 127 VKL 129 (138)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 42
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=54.95 E-value=67 Score=26.84 Aligned_cols=74 Identities=27% Similarity=0.359 Sum_probs=34.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhchhhh----HHHHh---hhHHHHHHHHHHHHhhhhhhhhHHHHHhhhhhhhHHHH
Q 008522 338 TMKEKVKSLEEQLKESEIRLQNANACFQTS----QEQLN---EMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELS 410 (563)
Q Consensus 338 sL~eKv~sLEeQLkese~Ql~~akas~ea~----~~~is---dmEn~IedLK~kvskAESRAe~AEskc~lLteTN~EL~ 410 (563)
.|+.++..+--.=.....++.++...++.+ +.+++ ++|+-|.-||..|..|-----.-|.+.. -|+
T Consensus 4 eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kve-------sL~ 76 (86)
T 3swk_A 4 ELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVE-------SLQ 76 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH-------HHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-------HHH
Confidence 344444444333334444444444444332 22222 5566666666655554332222233322 266
Q ss_pred HHHhhhhc
Q 008522 411 EEINFLKG 418 (563)
Q Consensus 411 eEL~~Lks 418 (563)
+||.|||-
T Consensus 77 eEl~fLkk 84 (86)
T 3swk_A 77 EEIAFLKK 84 (86)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHhh
Confidence 78888874
No 43
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=54.79 E-value=23 Score=29.31 Aligned_cols=78 Identities=18% Similarity=0.222 Sum_probs=44.0
Q ss_pred HHhhhhcCCCCcchhhhhhHHHHhhHHHHHHHhHhhhhhhHHHHHhHHHHHhhHHHHHHHHHHhhhhhhhhchhhhhhhc
Q 008522 412 EINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCI 491 (563)
Q Consensus 412 EL~~Lks~~ss~~ek~~~LE~qLkese~QLqhA~As~eAs~eqQ~ml~sti~DME~vIedLksKv~kaE~rae~~E~kc~ 491 (563)
||..|++. -.+||++|.+.+.+...+ +.++...|..|..-+..+.....+--...-
T Consensus 2 el~~l~~~-------~~sLE~~l~e~e~~~~~~-----------------~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq 57 (84)
T 1gk4_A 2 EVDALKGT-------NESLERQMREMEENFAVE-----------------AANYQDTIGRLQDEIQNMKEEMARHLREYQ 57 (84)
T ss_dssp HHHHHHHH-------HHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHH-------HHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666664 567888888765443332 344444444444444444433333222344
Q ss_pred ccccchhhhhhhhhhHHhHHHH
Q 008522 492 VLSEDNFELKNKQSFMRDKIKI 513 (563)
Q Consensus 492 ~LsEtN~eLneELsflrsk~~~ 513 (563)
.|=..-+.|.-||+-||.=++.
T Consensus 58 ~LlnvK~~Ld~EIatYRkLLEG 79 (84)
T 1gk4_A 58 DLLNVKMALDIEIATYRKLLEG 79 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhhHHHHHHHHHHHcC
Confidence 5666667788899999876653
No 44
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=54.24 E-value=19 Score=31.50 Aligned_cols=68 Identities=21% Similarity=0.276 Sum_probs=49.5
Q ss_pred hhhhHHHHhhhhHHhhhcccchhchhHHHHHHHhHHHHHhhh--hHHHHHhhhcCchhhhhHHHHHHHHHHHHHHHHH
Q 008522 280 MGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAK--DMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEI 355 (563)
Q Consensus 280 ~g~skel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k--~~~Lekl~~s~~SE~~sL~eKv~sLEeQLkese~ 355 (563)
|+..++++.-+...+..|.-+ +-||++++.+-+.- +.....+.. +..+|.+|++|+..|.++|.+.-.
T Consensus 4 M~~i~eLq~e~~~~E~QL~~A-------~QKLkdA~~~~e~DPDevNk~~~~~-R~~~V~~lq~Ki~elkr~lAd~v~ 73 (96)
T 2ic9_A 4 MSTLKEVQDNITLHEQRLVTT-------RQKLKDAERAVELDPDDVNKSTLQS-RRAAVSALETKLGELKRELADLIA 73 (96)
T ss_dssp CCTHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhcCCCcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567777777777777777655 45899999888864 333333433 578999999999999999887654
No 45
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=51.57 E-value=26 Score=29.29 Aligned_cols=46 Identities=22% Similarity=0.278 Sum_probs=28.1
Q ss_pred hHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHhhhhhhhHHHHHH
Q 008522 367 SQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEE 412 (563)
Q Consensus 367 ~~~~isdmEn~IedLK~kvskAESRAe~AEskc~lLteTN~EL~eE 412 (563)
...++..++.-+..+|+++.+.+..-..-+.++..|...-..|...
T Consensus 12 ~eeEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~q 57 (89)
T 3bas_A 12 QEEEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGS 57 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777777777777776666655555555554444444433
No 46
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=50.80 E-value=33 Score=29.12 Aligned_cols=53 Identities=21% Similarity=0.214 Sum_probs=45.4
Q ss_pred hHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHhhhhhhhHHHHHHHhhhhcC
Q 008522 367 SQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGN 419 (563)
Q Consensus 367 ~~~~isdmEn~IedLK~kvskAESRAe~AEskc~lLteTN~EL~eEL~~Lks~ 419 (563)
....|.-+.--|++||++-......++.+.+.-..|...|.+|+.|.+..+++
T Consensus 18 avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~R 70 (81)
T 2jee_A 18 AIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQER 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 34566777778999999999999999999999999999999999998887774
No 47
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=50.75 E-value=59 Score=27.67 Aligned_cols=54 Identities=22% Similarity=0.245 Sum_probs=35.0
Q ss_pred hhhhhhhhHHhHHHHHHHhHHHHHHHHHhhHHHHHHHhHHHHHHHHHH---HHHHHHHHHHHHH
Q 008522 499 ELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQL---ATQRELIQKQVLI 559 (563)
Q Consensus 499 eLneELsflrsk~~~LE~sL~~A~~~K~~TakdI~~~tK~i~dLv~qL---a~ERErL~~Qiss 559 (563)
.|-+|+.-||-||..+|+--.+-+-.=-+|-.+| --|-.|| -.|.+|||.|+++
T Consensus 23 ~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El-------~~Lq~qLe~kd~ei~rL~~~l~~ 79 (81)
T 3qh9_A 23 ELLQELRHLKIKVEELENERNQYEWKLKATKAEV-------AQLQEQVALKDAEIERLHSQLSR 79 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH-------HHHHHHHHhhHHHHHHHHHHHhh
Confidence 4778999999999988875554433333333333 3333343 3589999999875
No 48
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=50.16 E-value=64 Score=26.76 Aligned_cols=33 Identities=9% Similarity=0.207 Sum_probs=22.1
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHhhhhhchh
Q 008522 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQ 365 (563)
Q Consensus 333 ~SE~~sL~eKv~sLEeQLkese~Ql~~akas~e 365 (563)
.++.+.|.++|..||.+|.++...-.+.++...
T Consensus 13 E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk 45 (72)
T 3cve_A 13 EIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLK 45 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667778888888888777765555555443
No 49
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=47.92 E-value=2.1e+02 Score=28.34 Aligned_cols=60 Identities=23% Similarity=0.313 Sum_probs=43.3
Q ss_pred HHhhhhhhhhHHhHHHHHHHHHhhhhcccceeccccchhhHHHHHHHhhhhhhhhHhhHHHHHHHHHHHHHhhHhhhhhh
Q 008522 99 DLLFGILDSELREVERLLDTIHVEIVNVHHKISSCKHLREVFTIMEKMEKKLHDCEGSLKESQEHVSELKMQSAKFQRVL 178 (563)
Q Consensus 99 DlL~gildSEv~Ele~~~~~lq~~I~~~~~~~~s~~~~~~~f~~~~~~~~kL~~~~~sLkq~qe~~~eik~qsa~f~r~~ 178 (563)
.+|++|||.=|.....+++.|..+|...+..+..... +..-.++..+|++...|.|.+
T Consensus 156 ~ll~~lld~ivd~~~~~l~~l~~~i~~lE~~l~~~~~----------------------~~~l~~l~~lrr~l~~lrr~l 213 (339)
T 4ev6_A 156 FLLYHILNEITRSYSRILMNLEDELEELEDKLLAGYD----------------------REVMEKILGLRKTLVYFHKSL 213 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCC----------------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh----------------------hhHHHHHHHHHHHHHHHHHHh
Confidence 4788999988888888888888888877776654332 123345677788888888877
Q ss_pred hh
Q 008522 179 SY 180 (563)
Q Consensus 179 ~~ 180 (563)
.+
T Consensus 214 ~~ 215 (339)
T 4ev6_A 214 IA 215 (339)
T ss_dssp HH
T ss_pred hh
Confidence 54
No 50
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=47.15 E-value=1.5e+02 Score=26.24 Aligned_cols=96 Identities=21% Similarity=0.228 Sum_probs=53.6
Q ss_pred hhchhHHHHHHHhHHHHHhhhhHHHHHhhhcCchhhhhHHHHHHHHHHH----HHHHHHHHhhhhhchhhhHHHHhhhHH
Q 008522 301 LQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQ----LKESEIRLQNANACFQTSQEQLNEMDN 376 (563)
Q Consensus 301 ~~REsel~sKL~~~~eqL~~k~~~Lekl~~s~~SE~~sL~eKv~sLEeQ----Lkese~Ql~~akas~ea~~~~isdmEn 376 (563)
.+|+.+|++|..... .|+-++..|....-.. ....+-.+.......+..+..++++|-
T Consensus 2 Ek~~rdL~~~~~~L~------------------~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq 63 (111)
T 2v66_B 2 EQRNRDLQADNQRLK------------------YEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQ 63 (111)
T ss_dssp HHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777777775544 3333444444433221 222222344445555556778888888
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHhhhhhhhHHHHHHHh
Q 008522 377 FIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEIN 414 (563)
Q Consensus 377 ~IedLK~kvskAESRAe~AEskc~lLteTN~EL~eEL~ 414 (563)
-|.||-..--.+-+-.+--++|.-.--|-|+=|-.||.
T Consensus 64 ~NDDLER~~R~t~~SLeD~E~k~n~aiErnalLE~El~ 101 (111)
T 2v66_B 64 ANDDLERAKRATIVSLEDFEQRLNQAIERNAFLESELD 101 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888776655555555555555555555555555554
No 51
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=45.66 E-value=1.5e+02 Score=25.82 Aligned_cols=28 Identities=11% Similarity=0.058 Sum_probs=21.1
Q ss_pred HHhHHHHHhhHHHHHHHHHHhhhhhhhh
Q 008522 455 QSMLYSAIWDMETLIEDLKSKVSKAESK 482 (563)
Q Consensus 455 Q~ml~sti~DME~vIedLksKv~kaE~r 482 (563)
..-+..-+..|...++|++.|+-..-..
T Consensus 36 ~a~l~leldn~~~~~edfk~KyE~E~~~ 63 (119)
T 3ol1_A 36 KARVEVERDNLAEDIMRLREKLQEEMLQ 63 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 3446667889999999999998765443
No 52
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A {Mus musculus} SCOP: a.207.1.1
Probab=45.56 E-value=1.3e+02 Score=30.05 Aligned_cols=108 Identities=16% Similarity=0.230 Sum_probs=71.6
Q ss_pred hhhhHHHHHHHHHhhcCCccccccCCCccchHHHHHHHHHHHhhhhhhhhHHhHHHHHHHHHhhhhcccceeccccchhh
Q 008522 59 KLVNLHVLLMYLLARGDDLETLVMENSDVAATSIEKALVYDLLFGILDSELREVERLLDTIHVEIVNVHHKISSCKHLRE 138 (563)
Q Consensus 59 Kl~NL~~l~M~l~~~~~d~E~~~~~~~~i~~~s~eka~efDlL~gildSEv~Ele~~~~~lq~~I~~~~~~~~s~~~~~~ 138 (563)
|..=||.++..+.....++-.+..+-. +|++|-..|+ .-|.+++..|.+=+..++.++..... ..+.+.
T Consensus 176 k~TLLh~lv~~~~~~~p~l~~f~~eL~-----~v~~Askvs~--~~l~~~l~~l~~~~~~~~~~l~~~~~----~~~~~d 244 (340)
T 1v9d_A 176 KMTLLHFLAELCENDHPEVLKFPDELA-----HVEKASRVSA--ENLQKSLDQMKKQIADVERDVQNFPA----ATDEKD 244 (340)
T ss_dssp TSBHHHHHHHHHHHSCCTTSSGGGGCT-----THHHHHHCCH--HHHHHHHHHHHHHHHHHHHHHHTCCC----CSSSSC
T ss_pred CccHHHHHHHHHHHhCchhccchhHHH-----hHHHHHhCCH--HHHHHHHHHHHHHHHHHHHHHHhccc----ccchhH
Confidence 444478888888777777766664433 3555554442 33567888888888888888765422 122345
Q ss_pred HHHHHHHhhhhhhhhHhhHHHHHHHHHHHHHhhHhhhhhhhhcc
Q 008522 139 VFTIMEKMEKKLHDCEGSLKESQEHVSELKMQSAKFQRVLSYFI 182 (563)
Q Consensus 139 ~f~~~~~~~~kL~~~~~sLkq~qe~~~eik~qsa~f~r~~~~~~ 182 (563)
.|... |..-+.+++..+...+.+...+. ..|..+..+|.
T Consensus 245 ~f~~~--m~~Fl~~a~~~~~~l~~~~~~~~---~~~~~l~~yfg 283 (340)
T 1v9d_A 245 KFVEK--MTSFVKDAQEQYNKLRMMHSNME---TLYKELGDYFV 283 (340)
T ss_dssp CHHHH--HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHTT
T ss_pred HHHHH--HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhC
Confidence 56543 48889999999988888887775 45777777775
No 53
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=44.67 E-value=76 Score=24.07 Aligned_cols=50 Identities=18% Similarity=0.156 Sum_probs=33.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHH
Q 008522 336 VLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESL 385 (563)
Q Consensus 336 ~~sL~eKv~sLEeQLkese~Ql~~akas~ea~~~~isdmEn~IedLK~kv 385 (563)
...+..++...+.........+..++.......+.++.+-.-|..+|.+|
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi 56 (60)
T 3htk_A 7 KKTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQN 56 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566667777667777777777777776666666766666666666655
No 54
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=43.98 E-value=2e+02 Score=29.24 Aligned_cols=113 Identities=17% Similarity=0.183 Sum_probs=64.9
Q ss_pred HHHHHHHHHhhhhhhhHHHhhHHHhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHH
Q 008522 214 RHILRMLEKSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIV 293 (563)
Q Consensus 214 R~iLrMLekSlA~EldLEkkL~~s~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~ 293 (563)
..+-.++++-+.-.++.+..|.++....+.+=.+ +.+-.|+.|...+|+--+-+.+..|.
T Consensus 355 ~~~~~~~~~vl~G~~t~eeal~~~~~~i~~~l~~------------------~~~~~e~~~~~~~~~~~~~~~~~~~~-- 414 (471)
T 3mq9_A 355 YAVRTAVINAASGRQTVDEALKDAQTRITAARDG------------------LRAVMEARNVTHLLQQELTEAQKGFQ-- 414 (471)
T ss_dssp HHHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh------------------hHHHHHhhhHHHHHHHHHHHHhhhHH--
Confidence 4566778888888888888877765433322111 12333555666555544444444443
Q ss_pred hhhcccchhchhHHHHHHHhHHHHHhhhhHHHHHhhhcCchhhhhHHHHHHHHHHHHHHHHHHHhhhhhchh
Q 008522 294 QFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQ 365 (563)
Q Consensus 294 qf~L~as~~REsel~sKL~~~~eqL~~k~~~Lekl~~s~~SE~~sL~eKv~sLEeQLkese~Ql~~akas~e 365 (563)
+.+.|-..-+...=.|..|-+.++..-..||+.||.++++.+-+++++.|..+
T Consensus 415 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (471)
T 3mq9_A 415 -------------------DVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVE 467 (471)
T ss_dssp -------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------------------HHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333332334444446899999999999999998888743
No 55
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=42.04 E-value=1e+02 Score=26.07 Aligned_cols=44 Identities=32% Similarity=0.359 Sum_probs=26.4
Q ss_pred chhhhhhHHHHhhHHHHHHHhHhhhhhhHHHHHhHHHHHhhH-HHHHHHHHHhhh
Q 008522 424 TKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDM-ETLIEDLKSKVS 477 (563)
Q Consensus 424 ~ek~~~LE~qLkese~QLqhA~As~eAs~eqQ~ml~sti~DM-E~vIedLksKv~ 477 (563)
.+||..||.+=+.++.+++...... .+.+++| +..|.+|+.++.
T Consensus 22 IdKVR~LEqqN~~Le~~i~~l~~~~----------~~~~~~~ye~~i~~Lr~~i~ 66 (93)
T 3s4r_A 22 IDKVRFLEQQNKILLAELEQLKGQG----------KSRLGDLYEEEMRELRRQVD 66 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc----------CCCcHHHHHHHHHHHHHHHH
Confidence 4678888888888877776554321 1234444 555666665554
No 56
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=40.94 E-value=68 Score=27.00 Aligned_cols=33 Identities=15% Similarity=0.291 Sum_probs=20.8
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHhhhhhchh
Q 008522 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQ 365 (563)
Q Consensus 333 ~SE~~sL~eKv~sLEeQLkese~Ql~~akas~e 365 (563)
.++-+.|.++|..||.+|.++..+-.++++...
T Consensus 19 E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk 51 (79)
T 3cvf_A 19 ETRNAELEHQLRAMERSLEEARAERERARAEVG 51 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355556777777777777777665555555443
No 57
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=40.75 E-value=31 Score=33.32 Aligned_cols=45 Identities=22% Similarity=0.430 Sum_probs=22.8
Q ss_pred HHHHHhhhhHHHHHhhhc----------CchhhhhHHHHHHHHHHHHHHHHHHHh
Q 008522 314 FIEQLKAKDMVLQKLEST----------KNSEVLTMKEKVKSLEEQLKESEIRLQ 358 (563)
Q Consensus 314 ~~eqL~~k~~~Lekl~~s----------~~SE~~sL~eKv~sLEeQLkese~Ql~ 358 (563)
..+||+..+...++|..- +++|...|++++.+|+.+.+.++.++.
T Consensus 11 ~q~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~ 65 (190)
T 4emc_A 11 VKQQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTS 65 (190)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHH
Confidence 345666655555555431 466777777777777777776666553
No 58
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=36.27 E-value=82 Score=28.47 Aligned_cols=55 Identities=31% Similarity=0.293 Sum_probs=36.0
Q ss_pred HHHHHhhHHHHHHHHHHhhhhhhhhchhhhhhhcccccchhhhhhhhhhHHhHHHHHHHhHH
Q 008522 458 LYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLN 519 (563)
Q Consensus 458 l~sti~DME~vIedLksKv~kaE~rae~~E~kc~~LsEtN~eLneELsflrsk~~~LE~sL~ 519 (563)
|...+.+++.-|.+||..+..+.-+.+ -+...+.+|.+++..|+.++..||+.|.
T Consensus 80 L~~~l~~~~kE~~~lK~el~~~~~k~e-------~~~~e~~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 80 LSLDIENKDKEIYDLKHELIAAQIKAE-------SSAKEIKELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566677777788887776665533 3445566666666667777777766654
No 59
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=35.92 E-value=2.4e+02 Score=25.19 Aligned_cols=51 Identities=24% Similarity=0.261 Sum_probs=29.1
Q ss_pred hHHHHHHHhHHHHHhhhhHHHHHhhhcCchhhhhHHHHHHHHHHHHHHHHHH
Q 008522 305 SELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIR 356 (563)
Q Consensus 305 sel~sKL~~~~eqL~~k~~~Lekl~~s~~SE~~sL~eKv~sLEeQLkese~Q 356 (563)
.+|+.+|..+++.|..+.....+|... ..-...-.+.|.-|+-|+.-|..-
T Consensus 27 ~~L~~~L~~AEeaL~~Kq~~idelk~e-i~q~~~~lE~I~vLkaQv~IY~~D 77 (110)
T 2v4h_A 27 EDLRQQLQQAEEALVAKQELIDKLKEE-AEQHKIVMETVPVLKAQADIYKAD 77 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777777777777776666666553 111112223566666666555544
No 60
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=35.61 E-value=32 Score=26.71 Aligned_cols=36 Identities=25% Similarity=0.355 Sum_probs=26.2
Q ss_pred chhhhhhhcccccchhhhhhhhhhHHhHHHHHHHhH
Q 008522 483 TESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSL 518 (563)
Q Consensus 483 ae~~E~kc~~LsEtN~eLneELsflrsk~~~LE~sL 518 (563)
.+.++.+...|+..|..|..+++.|+..+..|...|
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555566777788888888888888888776544
No 61
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=34.72 E-value=37 Score=26.65 Aligned_cols=37 Identities=16% Similarity=0.209 Sum_probs=27.1
Q ss_pred chhhhhhhcccccchhhhhhhhhhHHhHHHHHHHhHH
Q 008522 483 TESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLN 519 (563)
Q Consensus 483 ae~~E~kc~~LsEtN~eLneELsflrsk~~~LE~sL~ 519 (563)
++.++.+.-.|...|..|..+++.|+..+..|...|.
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l~ 61 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFILA 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666777899999999888888887766554
No 62
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=34.26 E-value=1.9e+02 Score=23.69 Aligned_cols=73 Identities=21% Similarity=0.276 Sum_probs=47.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHhhhhhhhHHHHHHHh
Q 008522 335 EVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEIN 414 (563)
Q Consensus 335 E~~sL~eKv~sLEeQLkese~Ql~~akas~ea~~~~isdmEn~IedLK~kvskAESRAe~AEskc~lLteTN~EL~eEL~ 414 (563)
|..++.....+||.++++.+.+... .+.++...|..|...+.++......--.....|-..-+.|.-|+.
T Consensus 2 el~~l~~~~~sLE~~l~e~e~~~~~----------~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIa 71 (84)
T 1gk4_A 2 EVDALKGTNESLERQMREMEENFAV----------EAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIA 71 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 6677888888899988888776433 334455555555555555555544445566667777777777765
Q ss_pred hhh
Q 008522 415 FLK 417 (563)
Q Consensus 415 ~Lk 417 (563)
.-|
T Consensus 72 tYR 74 (84)
T 1gk4_A 72 TYR 74 (84)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 63
>1ux5_A BNI1 protein; structural protein, FH2 actin cytoskeleton; 2.5A {Saccharomyces cerevisiae} SCOP: a.207.1.1 PDB: 1y64_B* 1ux4_A
Probab=33.87 E-value=1.4e+02 Score=30.64 Aligned_cols=106 Identities=9% Similarity=0.082 Sum_probs=68.1
Q ss_pred HHHHHHHHHhhcCCccccccCCCccchHHHHHHHHHHHhhhhhhhhHHhHHHHHHHHHhhhhcccceeccc--cchhhHH
Q 008522 63 LHVLLMYLLARGDDLETLVMENSDVAATSIEKALVYDLLFGILDSELREVERLLDTIHVEIVNVHHKISSC--KHLREVF 140 (563)
Q Consensus 63 L~~l~M~l~~~~~d~E~~~~~~~~i~~~s~eka~efDlL~gildSEv~Ele~~~~~lq~~I~~~~~~~~s~--~~~~~~f 140 (563)
||.++..+.....++-.+..+- .+|++|--.|+ .-|.++|++|.+=+..++.++.... ++.+ .|.+..|
T Consensus 261 Lh~l~~~v~~~~p~l~~f~~eL-----~~v~~Aakv~~--~~l~~d~~~L~~~l~~v~~~l~~~~--~s~~~~~~~~d~f 331 (411)
T 1ux5_A 261 LNYVEKIVRLNYPSFNDFLSEL-----EPVLDVVKVSI--EQLVNDCKDFSQSIVNVERSVEIGN--LSDSSKFHPLDKV 331 (411)
T ss_dssp HHHHHHHHHHHCGGGGGHHHHT-----HHHHHHTTCCH--HHHHHHHHHHHHHHHHHHHHHHHST--TTCTTSSCTTCCH
T ss_pred HHHHHHHHHHhCcccccccchh-----hhHHHHHCCCH--HHHHHHHHHHHHHHHHHHHHHHhcc--CCcccccCcccHH
Confidence 7777777777666665554332 34555544332 3456889999999999988876422 2221 1334445
Q ss_pred HHHHHhhhhhhhhHhhHHHHHHHHHHHHHhhHhhhhhhhhcc
Q 008522 141 TIMEKMEKKLHDCEGSLKESQEHVSELKMQSAKFQRVLSYFI 182 (563)
Q Consensus 141 ~~~~~~~~kL~~~~~sLkq~qe~~~eik~qsa~f~r~~~~~~ 182 (563)
... |..-+.+++..+...++++..+.. .|.++..+|.
T Consensus 332 ~~~--~~~fl~~a~~~~~~l~~~~~~~~~---~~~~l~~yfg 368 (411)
T 1ux5_A 332 LIK--TLPVLPEARKKGDLLEDEVKLTIM---EFESLMHTYG 368 (411)
T ss_dssp HHH--HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHTT
T ss_pred HHH--HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhC
Confidence 542 377788888888888887776654 6777777775
No 64
>3htk_B Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=33.33 E-value=1.3e+02 Score=23.96 Aligned_cols=65 Identities=12% Similarity=0.218 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHhhhhh
Q 008522 340 KEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTD 404 (563)
Q Consensus 340 ~eKv~sLEeQLkese~Ql~~akas~ea~~~~isdmEn~IedLK~kvskAESRAe~AEskc~lLte 404 (563)
++|++.+|.++.+.-.....+-+.......++.+...=.-...-.+..|.+|..+.+.-|..+.+
T Consensus 3 s~ki~~~e~kI~~~~~~~~~~l~~~~~~~~~l~~~~~el~~~~i~~lE~~N~~~s~~~li~~~~~ 67 (73)
T 3htk_B 3 SQKIKDIDDQIQQLLLKQRHLLSKMASSMKSLKNCQKELISTQILQFEAQNMDVSMNDVIGFFNE 67 (73)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHhHHHHHHHHHHH
Confidence 45777778877777666555555555555566655555555666677777777777776665544
No 65
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=33.31 E-value=3e+02 Score=25.61 Aligned_cols=29 Identities=17% Similarity=0.280 Sum_probs=18.0
Q ss_pred hHHHHHhhHHHHHHHHHHhhhhhhhhchh
Q 008522 457 MLYSAIWDMETLIEDLKSKVSKAESKTES 485 (563)
Q Consensus 457 ml~sti~DME~vIedLksKv~kaE~rae~ 485 (563)
.|...+.|-+.+|+.|+..+.....-.+.
T Consensus 119 ~L~~ql~e~~~~l~~lq~ql~~LK~v~~~ 147 (154)
T 2ocy_A 119 RLTEQLREKDTLLDTLTLQLKNLKKVMHS 147 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777777766655544333
No 66
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=33.20 E-value=1.2e+02 Score=27.36 Aligned_cols=24 Identities=38% Similarity=0.454 Sum_probs=13.9
Q ss_pred hhhhhHHHHhhHHHHHHHhHhhhh
Q 008522 426 KVGILENQLRDLEIQLQQAKVSSE 449 (563)
Q Consensus 426 k~~~LE~qLkese~QLqhA~As~e 449 (563)
++.-|++.|+.++.+|+.|-|.++
T Consensus 72 ~vqeLqgEI~~Lnq~Lq~a~ae~e 95 (121)
T 3mq7_A 72 KVEELEGEITTLNHKLQDASAEVE 95 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555666666666666555444
No 67
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=32.16 E-value=2.2e+02 Score=26.57 Aligned_cols=109 Identities=13% Similarity=0.091 Sum_probs=53.7
Q ss_pred hhhHHHHhhHHHHHHHhHhhhhhhHHHHHhHHHHHhhHHHHHHHHHHhhhhhhhhchhhhhhhcccccchhhhhhhhhhH
Q 008522 428 GILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFM 507 (563)
Q Consensus 428 ~~LE~qLkese~QLqhA~As~eAs~eqQ~ml~sti~DME~vIedLksKv~kaE~rae~~E~kc~~LsEtN~eLneELsfl 507 (563)
+.+|+++.++-...-.+.+.- +.|-.++.-..|..|+.-+...+.+....+.-+-.=+..+-.|+.|+..|
T Consensus 38 d~~E~~~~~l~~e~~~~~~~~---------~vs~~~~~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aL 108 (152)
T 3a7p_A 38 NDKEAHLNELFQDNSGAIGGN---------IVSHDDALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISG 108 (152)
T ss_dssp -------------------CH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhccCCCcc---------cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457777777654433222210 23333333345555555555555554444444656666777888888888
Q ss_pred HhHHHHHHHhHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 008522 508 RDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQK 555 (563)
Q Consensus 508 rsk~~~LE~sL~~A~~~K~~TakdI~~~tK~i~dLv~qLa~ERErL~~ 555 (563)
.-.++.+|.++.....+. .+++.-++.+-+.|-++++.
T Consensus 109 qlq~n~lE~kl~kLq~EN----------~~LV~RWM~rk~qEAe~MN~ 146 (152)
T 3a7p_A 109 TIENNVLQQKLSDLKKEH----------SQLVARWLKKTEKETEAMNS 146 (152)
T ss_dssp HHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHH
Confidence 888888888887766554 34556666666666666553
No 68
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=30.11 E-value=69 Score=28.72 Aligned_cols=64 Identities=16% Similarity=0.243 Sum_probs=40.0
Q ss_pred HHHHhhhhHHhhhcccchhchhHHHHHHHhHHHHHhhh--hHHHHHhhhcCchhhhhHHHHHHHHHHHHHHHHH
Q 008522 284 KEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAK--DMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEI 355 (563)
Q Consensus 284 kel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k--~~~Lekl~~s~~SE~~sL~eKv~sLEeQLkese~ 355 (563)
++++.-+...+..|.-+ +-||++++.+-+.- +.....+.. +.++|.+|.+|+..|.+||.+.-.
T Consensus 25 eeLq~Ei~~~E~QL~~A-------rQKLkdA~~~~e~DPDevNK~tl~~-R~~~Vs~lq~KiaeLKrqLAd~va 90 (113)
T 4fi5_A 25 EELQREINAHEGQLVIA-------RQKVRDAEKQYEKDPDELNKRTLTD-REGVAVSIQAKIDELKRQLADRIA 90 (113)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHhcCCCcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444433 45888888877753 333333333 478888999998888888876543
No 69
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=29.77 E-value=2.4e+02 Score=30.28 Aligned_cols=32 Identities=16% Similarity=0.245 Sum_probs=24.7
Q ss_pred HHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHh
Q 008522 369 EQLNEMDNFIESLKESLYGAESRAESAEEKVT 400 (563)
Q Consensus 369 ~~isdmEn~IedLK~kvskAESRAe~AEskc~ 400 (563)
+.|+.++.+++.++.+|.+-|+....-..+|.
T Consensus 168 ~~i~~L~~~~~~l~~ki~~l~~~~~~~~~~~~ 199 (464)
T 1m1j_B 168 SSLRVLRAVIDSLHKKIQKLENAIATQTDYCR 199 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 46778888888999998888887766666664
No 70
>4i1l_A Scurfin, forkhead box protein P3; FOXP3, dimerization, complex ensemble, stability, regulatory activity, acetyation, DNA-binding, metal-binding; 2.10A {Mus musculus}
Probab=29.40 E-value=98 Score=26.93 Aligned_cols=37 Identities=8% Similarity=0.124 Sum_probs=28.1
Q ss_pred HHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 008522 520 RANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQ 556 (563)
Q Consensus 520 ~A~~~K~~TakdI~~~tK~i~dLv~qLa~ERErL~~Q 556 (563)
.....=+.+.-+--++..++--|=.||+.||+||+-=
T Consensus 36 ~eH~LddrS~AQcrvQ~qvVq~LE~QL~kEreRLqAM 72 (93)
T 4i1l_A 36 ADHLLDEKGKAQCLLQREVVQSLEQQLELEKEKLGAM 72 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445566677778888999999999999999863
No 71
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=28.44 E-value=1.1e+02 Score=26.04 Aligned_cols=78 Identities=15% Similarity=0.216 Sum_probs=39.2
Q ss_pred hcCchhhhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHhhhhhhhHHH
Q 008522 330 STKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLEL 409 (563)
Q Consensus 330 ~s~~SE~~sL~eKv~sLEeQLkese~Ql~~akas~ea~~~~isdmEn~IedLK~kvskAESRAe~AEskc~lLteTN~EL 409 (563)
+++...+..|..+..+||.++++.+.+... ++..+..+|..|...+..+......--..+..|-..-..|
T Consensus 8 ~~~~~~~~~Lq~~~~~LE~~l~e~E~~~~~----------e~~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~L 77 (95)
T 3mov_A 8 SSRENLYFQGQKESRACLERIQELEDLLAK----------EKDNSRRMLTDKEREMAEIRDQMQQQLNDYEQLLDVKLAL 77 (95)
T ss_dssp ----------CCCCHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHhhHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666677788888877775432 3334444555555555444444444445556666666667
Q ss_pred HHHHhhhh
Q 008522 410 SEEINFLK 417 (563)
Q Consensus 410 ~eEL~~Lk 417 (563)
.-|+..-|
T Consensus 78 e~EIatYr 85 (95)
T 3mov_A 78 DMEISAYR 85 (95)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665443
No 72
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=27.32 E-value=1.7e+02 Score=24.82 Aligned_cols=53 Identities=32% Similarity=0.332 Sum_probs=43.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHH
Q 008522 334 SEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLY 386 (563)
Q Consensus 334 SE~~sL~eKv~sLEeQLkese~Ql~~akas~ea~~~~isdmEn~IedLK~kvs 386 (563)
-|+-.|+-||..+|..---|+-.|.++|+.....+.++..=+.-|+-|.++++
T Consensus 26 qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l~ 78 (81)
T 3qh9_A 26 QELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQLS 78 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 56778999999999999999999999998877777777777777777776654
No 73
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin assembly, protein binding; 2.55A {Homo sapiens} PDB: 2z6e_A
Probab=26.30 E-value=1.6e+02 Score=30.95 Aligned_cols=110 Identities=16% Similarity=0.203 Sum_probs=75.5
Q ss_pred hhhhhHHHHHHHHHhhcCCccccccCCCccchHHHHHHHHHHHhhhhhhhhHHhHHHHHHHHHhhhhcccceeccccchh
Q 008522 58 EKLVNLHVLLMYLLARGDDLETLVMENSDVAATSIEKALVYDLLFGILDSELREVERLLDTIHVEIVNVHHKISSCKHLR 137 (563)
Q Consensus 58 EKl~NL~~l~M~l~~~~~d~E~~~~~~~~i~~~s~eka~efDlL~gildSEv~Ele~~~~~lq~~I~~~~~~~~s~~~~~ 137 (563)
=|..=||.++..+.....++-.+..+-. +|++|-..|+ .-|.++|++|.+=+..++.++...... ++.+ +
T Consensus 257 ~k~TLLhylv~~v~~~~p~l~~f~~eL~-----~v~~Askv~~--~~l~~~~~~L~~~l~~v~~~l~~~~~~--~~~~-~ 326 (483)
T 2j1d_G 257 KNITLLHYLITIVENKYPSVLNLNEELR-----DIPQAAKVNM--TELDKEISTLRSGLKAVETELEYQKSQ--PPQP-G 326 (483)
T ss_dssp TTCBHHHHHHHHHHHHCGGGGGHHHHTT-----THHHHHTCCH--HHHHHHHHHHHHHHHHHHHHHHHHHTS--CCCT-T
T ss_pred CCccHHHHHHHHHHHhCchhhchHHHHh-----hHHHHhcCCH--HHHHHHHHHHHHHHHHHHHHHHHhhcc--CCCc-h
Confidence 3555688899888888777776654433 3455655553 446788999999999998888765432 1222 4
Q ss_pred hHHHHHHHhhhhhhhhHhhHHHHHHHHHHHHHhhHhhhhhhhhcc
Q 008522 138 EVFTIMEKMEKKLHDCEGSLKESQEHVSELKMQSAKFQRVLSYFI 182 (563)
Q Consensus 138 ~~f~~~~~~~~kL~~~~~sLkq~qe~~~eik~qsa~f~r~~~~~~ 182 (563)
..|... |..=+..++..+...+.++..+.. .|..+..+|.
T Consensus 327 d~f~~~--m~~Fl~~a~~~~~~L~~~~~~~~~---~~~~l~~yFG 366 (483)
T 2j1d_G 327 DKFVSV--VSQFITVASFSFSDVEDLLAEAKD---LFTKAVKHFG 366 (483)
T ss_dssp CCHHHH--HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHTT
T ss_pred hhHHHH--HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhC
Confidence 456543 478888999999999888888865 5666666664
No 74
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=26.26 E-value=1.5e+02 Score=28.66 Aligned_cols=47 Identities=28% Similarity=0.449 Sum_probs=20.1
Q ss_pred hhhhhhhHHHHHhhhhhhhHHHHHHHh-------hhhcCCCCcchhhhhhHHHHhhHHHHH
Q 008522 388 AESRAESAEEKVTQLTDTNLELSEEIN-------FLKGNNDSNTKKVGILENQLRDLEIQL 441 (563)
Q Consensus 388 AESRAe~AEskc~lLteTN~EL~eEL~-------~Lks~~ss~~ek~~~LE~qLkese~QL 441 (563)
|+.|.++|.--+.-|+.-|.-|+.+|. .|+. ++.+|+.+.+.++.++
T Consensus 11 ~q~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~-------ql~sl~~~~~~~~~~~ 64 (190)
T 4emc_A 11 VKQQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQK-------QIDSLNAQVKELKTQT 64 (190)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhhhhhhhhHH
Confidence 455555555555555555555555444 4443 3555666665555444
No 75
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=25.99 E-value=87 Score=26.76 Aligned_cols=77 Identities=10% Similarity=0.063 Sum_probs=37.8
Q ss_pred HHhhhhcCCCCcchhhhhhHHHHhhHHHHHHHhHhhhhhhHHHHHhHHHHHhhHHHHHHHHHHhhhhhhhhchhhhhhhc
Q 008522 412 EINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCI 491 (563)
Q Consensus 412 EL~~Lks~~ss~~ek~~~LE~qLkese~QLqhA~As~eAs~eqQ~ml~sti~DME~vIedLksKv~kaE~rae~~E~kc~ 491 (563)
.++.|++. -.+||++|++.+.+... .+.++..+|.+|..-+..+......--..+-
T Consensus 13 ~~~~Lq~~-------~~~LE~~l~e~E~~~~~-----------------e~~~~q~~i~~lE~eL~~~r~e~~~ql~EYq 68 (95)
T 3mov_A 13 LYFQGQKE-------SRACLERIQELEDLLAK-----------------EKDNSRRMLTDKEREMAEIRDQMQQQLNDYE 68 (95)
T ss_dssp -----CCC-------CHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-------HHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555554 56888888887643322 1233333333333333333322222222244
Q ss_pred ccccchhhhhhhhhhHHhHHH
Q 008522 492 VLSEDNFELKNKQSFMRDKIK 512 (563)
Q Consensus 492 ~LsEtN~eLneELsflrsk~~ 512 (563)
.|-..-+.|.-||+-||.=++
T Consensus 69 ~LlnvKl~Le~EIatYrkLLE 89 (95)
T 3mov_A 69 QLLDVKLALDMEISAYRKLLE 89 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHc
Confidence 566666778888888886554
No 76
>3ck6_A Putative membrane transport protein; APC91421.1, ZNTB, cytoplasmic domain, PSI-2, protein structure initiative; HET: MSE; 1.90A {Vibrio parahaemolyticus rimd 2210633} PDB: 3bhc_A*
Probab=25.30 E-value=3.4e+02 Score=25.13 Aligned_cols=55 Identities=18% Similarity=0.172 Sum_probs=42.4
Q ss_pred HHHhhhhhhhhHHhHHHHHHHHHhhhhcccceeccccchhhHHHHHHHhhhhhhhhHhhHHHHHHHHHHHHHhhHhhhhh
Q 008522 98 YDLLFGILDSELREVERLLDTIHVEIVNVHHKISSCKHLREVFTIMEKMEKKLHDCEGSLKESQEHVSELKMQSAKFQRV 177 (563)
Q Consensus 98 fDlL~gildSEv~Ele~~~~~lq~~I~~~~~~~~s~~~~~~~f~~~~~~~~kL~~~~~sLkq~qe~~~eik~qsa~f~r~ 177 (563)
.++|+.|||.=|...-.+++.|..+|...+.. . .....+..+|++...|.|.
T Consensus 135 ~~ll~~lld~ivd~y~~~l~~l~~~id~lE~~-----~-----------------------~~~~~l~~lrr~l~~lrr~ 186 (252)
T 3ck6_A 135 ASLLNQIIEGLNGKIDLYLDTIEETLNEFDVN-----D-----------------------ESTYNHIAAQKALISIKRF 186 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTT-----C-----------------------GGGCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----c-----------------------hHHHHHHHHHHHHHHHHHH
Confidence 46899999999988888999998888887754 0 0124577788888888888
Q ss_pred hhh
Q 008522 178 LSY 180 (563)
Q Consensus 178 ~~~ 180 (563)
+.+
T Consensus 187 l~p 189 (252)
T 3ck6_A 187 IRP 189 (252)
T ss_dssp HHH
T ss_pred HHH
Confidence 865
No 77
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=24.19 E-value=2.4e+02 Score=24.10 Aligned_cols=60 Identities=18% Similarity=0.262 Sum_probs=48.9
Q ss_pred hhhhhhHHhHHHHHHHhHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 008522 501 KNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVLIL 560 (563)
Q Consensus 501 neELsflrsk~~~LE~sL~~A~~~K~~TakdI~~~tK~i~dLv~qLa~ERErL~~Qissl 560 (563)
.+-|..||+.++.+|.-|......--.|..+|-.--+-+-+.-+-||.-...||..|-.+
T Consensus 18 e~rL~~Yr~~IeelE~~L~s~s~~~~~Tpq~L~~~l~~~h~~FiaLAa~l~~lH~~V~~~ 77 (93)
T 3t98_B 18 EVQLQQYRQQIEELENHLATQANNSHITPQDLSMAMQKIYQTFVALAAQLQSIHENVKVL 77 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHSCHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345778999999999999886654566788888877778888888999999999888765
No 78
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=23.88 E-value=2.1e+02 Score=23.63 Aligned_cols=74 Identities=15% Similarity=0.258 Sum_probs=38.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHhhhhhhhHHHHHHH
Q 008522 334 SEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEI 413 (563)
Q Consensus 334 SE~~sL~eKv~sLEeQLkese~Ql~~akas~ea~~~~isdmEn~IedLK~kvskAESRAe~AEskc~lLteTN~EL~eEL 413 (563)
+|+.+|.-...+||.++++.+.+... ++.++...|..|...+.++....+.--.....|-..-+.|.-|+
T Consensus 3 ~eie~L~~q~~~Le~~l~e~E~~~~~----------~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EI 72 (86)
T 1x8y_A 3 CQLSQLQCQLAAKEAKLRDLEDSLAR----------ERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEI 72 (86)
T ss_dssp ---------CTTHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 45666666777788888877765432 33444555555555555544444444455666666666666666
Q ss_pred hhhh
Q 008522 414 NFLK 417 (563)
Q Consensus 414 ~~Lk 417 (563)
..-|
T Consensus 73 atYR 76 (86)
T 1x8y_A 73 HAYR 76 (86)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
No 79
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=23.60 E-value=3.7e+02 Score=23.49 Aligned_cols=84 Identities=20% Similarity=0.266 Sum_probs=40.9
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHhhhhhch---hh-hHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHhhhhhhhHH
Q 008522 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACF---QT-SQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLE 408 (563)
Q Consensus 333 ~SE~~sL~eKv~sLEeQLkese~Ql~~akas~---ea-~~~~isdmEn~IedLK~kvskAESRAe~AEskc~lLteTN~E 408 (563)
.+|+..++-.|++|+-++.....+..+..++. +. +...+.++...|.+|...+..+......--..+..|-..-+.
T Consensus 37 k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~vKl~ 116 (131)
T 3tnu_A 37 KSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEMEQQNQEYKILLDVKTR 116 (131)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555544333322222111 11 223555666666666666665555555555556666666666
Q ss_pred HHHHHhhh
Q 008522 409 LSEEINFL 416 (563)
Q Consensus 409 L~eEL~~L 416 (563)
|.-|+..-
T Consensus 117 Ld~EIatY 124 (131)
T 3tnu_A 117 LEQEIATY 124 (131)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666543
No 80
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=22.92 E-value=1.4e+02 Score=27.41 Aligned_cols=6 Identities=50% Similarity=0.390 Sum_probs=0.0
Q ss_pred hhHHHH
Q 008522 429 ILENQL 434 (563)
Q Consensus 429 ~LE~qL 434 (563)
+|..||
T Consensus 121 ~lq~QL 126 (135)
T 2e7s_A 121 TLTLQL 126 (135)
T ss_dssp ------
T ss_pred HHHHHH
Confidence 333333
No 81
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=22.67 E-value=3.8e+02 Score=23.30 Aligned_cols=48 Identities=25% Similarity=0.314 Sum_probs=29.5
Q ss_pred HHhhhHHHHHHHHHHHHhhhhhhhhHHHHHhhhhhhhHHHHHHHhhhh
Q 008522 370 QLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLK 417 (563)
Q Consensus 370 ~isdmEn~IedLK~kvskAESRAe~AEskc~lLteTN~EL~eEL~~Lk 417 (563)
.+.++...|.+|...+..+......--..+..|-..-+.|.-|+..-|
T Consensus 76 ~l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Ld~EIatYR 123 (129)
T 3tnu_B 76 ALKDARNKLAELEEALQKAKQDMARLLREYQELMNTKLALDVEIATYR 123 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666666666655555555556666666666666665443
No 82
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=22.09 E-value=4.8e+02 Score=24.25 Aligned_cols=9 Identities=33% Similarity=0.593 Sum_probs=3.5
Q ss_pred hHHHHHHHh
Q 008522 406 NLELSEEIN 414 (563)
Q Consensus 406 N~EL~eEL~ 414 (563)
|.+|...|.
T Consensus 117 ~~~L~~ql~ 125 (154)
T 2ocy_A 117 NKRLTEQLR 125 (154)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 83
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=21.27 E-value=2.3e+02 Score=25.03 Aligned_cols=34 Identities=15% Similarity=0.328 Sum_probs=20.9
Q ss_pred HHHhHhhhhhhHHHHHhHHHHHhhHHHHHHHHHH
Q 008522 441 LQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKS 474 (563)
Q Consensus 441 LqhA~As~eAs~eqQ~ml~sti~DME~vIedLks 474 (563)
+..-+..++.-..+=..-|++++|+|.++.+-..
T Consensus 27 i~eLk~~ve~lEkERDFYF~KLRdIEiLcQe~~~ 60 (106)
T 4e61_A 27 IEQYKGTVSTLEIEREFYFNKLRDIEILVHTTQD 60 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333433333344568899999999887644
No 84
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=21.25 E-value=57 Score=23.66 Aligned_cols=28 Identities=36% Similarity=0.436 Sum_probs=23.5
Q ss_pred hhhhHHHHHhhhhhhhHHHHHHHhhhhc
Q 008522 391 RAESAEEKVTQLTDTNLELSEEINFLKG 418 (563)
Q Consensus 391 RAe~AEskc~lLteTN~EL~eEL~~Lks 418 (563)
|..+-|.|+..|-..|.+|..|+.-||+
T Consensus 1 RM~QLE~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 1 RMAQLEAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4567789999999999999999988876
No 85
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=21.07 E-value=1.6e+02 Score=24.70 Aligned_cols=52 Identities=23% Similarity=0.272 Sum_probs=21.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHH----hhhHHHHHHHHHHH
Q 008522 334 SEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQL----NEMDNFIESLKESL 385 (563)
Q Consensus 334 SE~~sL~eKv~sLEeQLkese~Ql~~akas~ea~~~~i----sdmEn~IedLK~kv 385 (563)
+|+-+++.|++.+|..=.+.+-++..+....+.++.+. ..+.++++-|=.||
T Consensus 6 ~e~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI 61 (79)
T 3cvf_A 6 AEREETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSL 61 (79)
T ss_dssp ----CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 44555556665554444444444444444433333211 24444455444444
No 86
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=20.73 E-value=2.1e+02 Score=21.73 Aligned_cols=39 Identities=23% Similarity=0.359 Sum_probs=25.4
Q ss_pred hHHHHHhhhc--CchhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 008522 322 DMVLQKLEST--KNSEVLTMKEKVKSLEEQLKESEIRLQNA 360 (563)
Q Consensus 322 ~~~Lekl~~s--~~SE~~sL~eKv~sLEeQLkese~Ql~~a 360 (563)
.++|+.+... ++.|.-.|.-.++.||++|.-..+.++..
T Consensus 6 kselqalkkegfspeelaaleselqalekklaalksklqal 46 (48)
T 1g6u_A 6 KSELQALKKEGFSPEELAALESELQALEKKLAALKSKLQAL 46 (48)
T ss_dssp HHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555443 46667777777888888887777666544
No 87
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=20.44 E-value=4.2e+02 Score=22.99 Aligned_cols=52 Identities=23% Similarity=0.269 Sum_probs=38.3
Q ss_pred hHHHHHHHhHHHHHhhhhHHHHHhhhcCchhhhhHHHHHHHHHHHHHHHHHHH
Q 008522 305 SELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRL 357 (563)
Q Consensus 305 sel~sKL~~~~eqL~~k~~~Lekl~~s~~SE~~sL~eKv~sLEeQLkese~Ql 357 (563)
.+|..+|..+++-|..+...+++|.+. ..-.....+.|.-|..|+.-|..--
T Consensus 5 ~~L~~~L~~aEeaL~~kq~~id~lke~-~~q~~~~~E~i~vLk~Qv~IY~~DF 56 (94)
T 3jsv_C 5 EDLRQQLQQAEEALVAKQELIDKLKEE-AEQHKIVMETVPVLKAQADIYKADF 56 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368889999999999988888888775 3333344477788888877776543
Done!