Query 008522
Match_columns 563
No_of_seqs 57 out of 59
Neff 3.4
Searched_HMMs 13730
Date Mon Mar 25 05:31:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008522.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/008522hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2ap3a1 a.24.27.1 (A:12-196) H 49.7 49 0.0036 25.0 14.9 22 334-355 22-43 (185)
2 d1ux5a_ a.207.1.1 (A:) Bni1 {B 36.6 45 0.0033 31.7 8.2 126 43-181 242-367 (411)
3 d1grja1 a.2.1.1 (A:2-79) GreA 28.9 64 0.0047 24.8 6.4 24 447-470 46-69 (78)
4 d1v9da_ a.207.1.1 (A:) Diaphan 23.5 1.7E+02 0.012 26.6 9.6 107 59-178 171-277 (332)
5 d1fxka_ a.2.5.1 (A:) Prefoldin 21.7 1.7E+02 0.012 22.6 9.3 78 285-369 5-100 (107)
6 d2bbha1 d.328.1.1 (A:13-244) M 15.6 1.6E+02 0.011 24.8 6.9 61 99-181 156-216 (232)
7 d1seta1 a.2.7.1 (A:1-110) Sery 12.4 2.7E+02 0.019 21.3 6.9 51 62-132 10-60 (110)
8 d1fxkc_ a.2.5.1 (C:) Prefoldin 12.0 3.1E+02 0.023 21.3 10.0 23 500-522 86-108 (133)
9 d1fxka_ a.2.5.1 (A:) Prefoldin 11.4 3.1E+02 0.023 20.9 8.7 22 373-394 62-83 (107)
10 d1hlva1 a.4.1.7 (A:1-66) DNA-b 10.5 79 0.0057 23.7 2.8 30 204-233 4-40 (66)
No 1
>d2ap3a1 a.24.27.1 (A:12-196) Hypothetical protein MW0975 (SA0943) {Staphylococcus aureus [TaxId: 1280]}
Probab=49.66 E-value=49 Score=25.03 Aligned_cols=22 Identities=23% Similarity=0.308 Sum_probs=11.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHH
Q 008522 334 SEVLTMKEKVKSLEEQLKESEI 355 (563)
Q Consensus 334 SE~~sL~eKv~sLEeQLkese~ 355 (563)
..+..+..++..++.++.....
T Consensus 22 ~~~~~~~~k~~~~e~~~~~~~~ 43 (185)
T d2ap3a1 22 EPIKTVGKKIAELDEKKKKLTE 43 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666655554433
No 2
>d1ux5a_ a.207.1.1 (A:) Bni1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=36.64 E-value=45 Score=31.66 Aligned_cols=126 Identities=10% Similarity=0.093 Sum_probs=77.8
Q ss_pred hhhhhhhhhccccchhhhhhHHHHHHHHHhhcCCccccccCCCccchHHHHHHHHHHHhhhhhhhhHHhHHHHHHHHHhh
Q 008522 43 MTVLTRVDLDLAYSSEKLVNLHVLLMYLLARGDDLETLVMENSDVAATSIEKALVYDLLFGILDSELREVERLLDTIHVE 122 (563)
Q Consensus 43 ~~~ltrveldla~~SEKl~NL~~l~M~l~~~~~d~E~~~~~~~~i~~~s~eka~efDlL~gildSEv~Ele~~~~~lq~~ 122 (563)
...|+++- |+=-..=|..=||.++.++.....|+-.+..+- .+|++|-.+|+ +-+.++|.+|.+-+..++.+
T Consensus 242 L~sL~kL~-d~Ks~d~~~tLL~yiv~~~~~~~p~l~~~~~el-----~~v~~a~~~~~--~~l~~~~~~L~~~l~~i~~~ 313 (411)
T d1ux5a_ 242 LSTLQRLT-FIKDTTNSMTFLNYVEKIVRLNYPSFNDFLSEL-----EPVLDVVKVSI--EQLVNDCKDFSQSIVNVERS 313 (411)
T ss_dssp GGGGGGSS-SCBCTTSCSBHHHHHHHHHHHHCGGGGGHHHHT-----HHHHHHTTCCH--HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHhh-hccCCCCCeeHHHHHHHHHHHhCcHhhccHHHH-----HHHHHHhcCCH--HHHHHHHHHHHHHHHHHHHH
Confidence 45555542 222122344456777777777766665544332 34566666552 34778888998888888888
Q ss_pred hhcccceeccccchhhHHHHHHHhhhhhhhhHhhHHHHHHHHHHHHHhhHhhhhhhhhc
Q 008522 123 IVNVHHKISSCKHLREVFTIMEKMEKKLHDCEGSLKESQEHVSELKMQSAKFQRVLSYF 181 (563)
Q Consensus 123 I~~~~~~~~s~~~~~~~f~~~~~~~~kL~~~~~sLkq~qe~~~eik~qsa~f~r~~~~~ 181 (563)
+..+.....+-.+.+..|..- +..=+..++..+..++..+.++... |..+..+|
T Consensus 314 ~~~~~~~~~~~~~~~d~f~~~--~~~fl~~~~~~~~~l~~~~~~~~~~---~~~~~~yf 367 (411)
T d1ux5a_ 314 VEIGNLSDSSKFHPLDKVLIK--TLPVLPEARKKGDLLEDEVKLTIME---FESLMHTY 367 (411)
T ss_dssp HHHSTTTCTTSSCTTCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHT
T ss_pred HHhhcccccccccchhhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHh
Confidence 876555433333334445432 3777888888888888888887765 56666665
No 3
>d1grja1 a.2.1.1 (A:2-79) GreA transcript cleavage protein, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=28.88 E-value=64 Score=24.83 Aligned_cols=24 Identities=29% Similarity=0.322 Sum_probs=16.9
Q ss_pred hhhhhHHHHHhHHHHHhhHHHHHH
Q 008522 447 SSEASQEQQSMLYSAIWDMETLIE 470 (563)
Q Consensus 447 s~eAs~eqQ~ml~sti~DME~vIe 470 (563)
-=.|-+++|+++...|..++..+.
T Consensus 46 eY~aAKe~q~~~e~RI~eLe~~L~ 69 (78)
T d1grja1 46 EYHAAREQQGFCEGRIKDIEAKLS 69 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334557788888888888777653
No 4
>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=23.49 E-value=1.7e+02 Score=26.55 Aligned_cols=107 Identities=14% Similarity=0.158 Sum_probs=68.6
Q ss_pred hhhhHHHHHHHHHhhcCCccccccCCCccchHHHHHHHHHHHhhhhhhhhHHhHHHHHHHHHhhhhcccceeccccchhh
Q 008522 59 KLVNLHVLLMYLLARGDDLETLVMENSDVAATSIEKALVYDLLFGILDSELREVERLLDTIHVEIVNVHHKISSCKHLRE 138 (563)
Q Consensus 59 Kl~NL~~l~M~l~~~~~d~E~~~~~~~~i~~~s~eka~efDlL~gildSEv~Ele~~~~~lq~~I~~~~~~~~s~~~~~~ 138 (563)
|..=||.++-++.....++..+..+=.+ |..|--.|+ .-+.+++.+|.+=+..++.++....... +.+.
T Consensus 171 ~~tLL~~iv~~~~~~~p~l~~~~~eL~~-----v~~ask~~~--~~l~~~~~~l~~~l~~~~~~l~~~~~~~----~~~d 239 (332)
T d1v9da_ 171 KMTLLHFLAELCENDHPEVLKFPDELAH-----VEKASRVSA--ENLQKSLDQMKKQIADVERDVQNFPAAT----DEKD 239 (332)
T ss_dssp TSBHHHHHHHHHHHSCCTTSSGGGGCTT-----HHHHHHCCH--HHHHHHHHHHHHHHHHHHHHHHTCCCCS----SSSC
T ss_pred CccHHHHHHHHHHHhCchhccchhhhhh-----HHHHhcCCH--HHHHHHHHHHHHHHHHHHHHHHhccccc----cchh
Confidence 4444577777777666666655544333 444544443 3467889999888888888887554322 2233
Q ss_pred HHHHHHHhhhhhhhhHhhHHHHHHHHHHHHHhhHhhhhhh
Q 008522 139 VFTIMEKMEKKLHDCEGSLKESQEHVSELKMQSAKFQRVL 178 (563)
Q Consensus 139 ~f~~~~~~~~kL~~~~~sLkq~qe~~~eik~qsa~f~r~~ 178 (563)
.|... +..=+.++...++..+..+.++.....+.-..+
T Consensus 240 ~f~~~--~~~Fl~~a~~~l~~l~~~~~~~~~~~~~~~~yf 277 (332)
T d1v9da_ 240 KFVEK--MTSFVKDAQEQYNKLRMMHSNMETLYKELGDYF 277 (332)
T ss_dssp CHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44442 477788889999988888888887544444333
No 5
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=21.70 E-value=1.7e+02 Score=22.62 Aligned_cols=78 Identities=19% Similarity=0.195 Sum_probs=40.1
Q ss_pred HHHhhhhHHhhhcccchhchhHHHHHHHhHHHHHhhhhHHHHHhhhc-----------------Cchh-hhhHHHHHHHH
Q 008522 285 EMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLEST-----------------KNSE-VLTMKEKVKSL 346 (563)
Q Consensus 285 el~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~Lekl~~s-----------------~~SE-~~sL~eKv~sL 346 (563)
+.+.+++.+|..|... .+++....-++..-+.+++.|..- .-+| ...|.+++..+
T Consensus 5 e~~~~~q~lq~el~~~-------~~q~~~le~q~~E~~~vl~eL~~l~~d~~vyk~vG~vLv~~~~~e~~~~l~~~~e~l 77 (107)
T d1fxka_ 5 HQLAQFQQLQQQAQAI-------SVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEELQEKLETL 77 (107)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHcCCcccHHHHHhcchhhcCcHHHHHHHHHHHHHHH
Confidence 4556666666666533 333444444444444444444332 1122 23566777777
Q ss_pred HHHHHHHHHHHhhhhhchhhhHH
Q 008522 347 EEQLKESEIRLQNANACFQTSQE 369 (563)
Q Consensus 347 EeQLkese~Ql~~akas~ea~~~ 369 (563)
+..++..+.|+.......+..+.
T Consensus 78 ~~~i~~l~~q~~~l~~~l~~~~~ 100 (107)
T d1fxka_ 78 QLREKTIERQEERVMKKLQEMQV 100 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777766666555555433333
No 6
>d2bbha1 d.328.1.1 (A:13-244) Magnesium transport protein CorA, soluble domain {Thermotoga maritima [TaxId: 2336]}
Probab=15.61 E-value=1.6e+02 Score=24.79 Aligned_cols=61 Identities=18% Similarity=0.270 Sum_probs=41.7
Q ss_pred HHhhhhhhhhHHhHHHHHHHHHhhhhcccceeccccchhhHHHHHHHhhhhhhhhHhhHHHHHHHHHHHHHhhHhhhhhh
Q 008522 99 DLLFGILDSELREVERLLDTIHVEIVNVHHKISSCKHLREVFTIMEKMEKKLHDCEGSLKESQEHVSELKMQSAKFQRVL 178 (563)
Q Consensus 99 DlL~gildSEv~Ele~~~~~lq~~I~~~~~~~~s~~~~~~~f~~~~~~~~kL~~~~~sLkq~qe~~~eik~qsa~f~r~~ 178 (563)
.++|.|+|.=|.....+++.|..+|...+..+...... .....+..+|+....|.|++
T Consensus 156 ~ll~~lld~ivd~y~~~l~~l~~~id~lE~~v~~~~~~----------------------~~l~~i~~lrr~l~~lrr~l 213 (232)
T d2bbha1 156 YLLYSLIDALVDDYFVLLEKIDDEIDVLEEEVLERPEK----------------------ETVQRTHQLKRNLVELRKTI 213 (232)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----------------------------CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcH----------------------HHHHHHHHHHHHHHHHHHHH
Confidence 48899999999999999999999998888776654330 11234666777777777766
Q ss_pred hhc
Q 008522 179 SYF 181 (563)
Q Consensus 179 ~~~ 181 (563)
.+.
T Consensus 214 ~p~ 216 (232)
T d2bbha1 214 WPL 216 (232)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 7
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=12.41 E-value=2.7e+02 Score=21.31 Aligned_cols=51 Identities=22% Similarity=0.378 Sum_probs=29.3
Q ss_pred hHHHHHHHHHhhcCCccccccCCCccchHHHHHHHHHHHhhhhhhhhHHhHHHHHHHHHhhhhcccceecc
Q 008522 62 NLHVLLMYLLARGDDLETLVMENSDVAATSIEKALVYDLLFGILDSELREVERLLDTIHVEIVNVHHKISS 132 (563)
Q Consensus 62 NL~~l~M~l~~~~~d~E~~~~~~~~i~~~s~eka~efDlL~gildSEv~Ele~~~~~lq~~I~~~~~~~~s 132 (563)
|...+.--+..|..++. +.+.+++ |.+.|++-.=++.++++.-.+...|..
T Consensus 10 n~e~v~~~l~~R~~~~~-------------ld~i~~l-------d~~rr~l~~~~e~l~~~rN~~sk~i~k 60 (110)
T d1seta1 10 EPEVFHRAIREKGVALD-------------LEALLAL-------DREVQELKKRLQEVQTERNQVAKRVPK 60 (110)
T ss_dssp CHHHHHHHHHHTTCCCC-------------HHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred CHHHHHHHHHHcCCccC-------------HHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555556666654432 2334444 567777777777777766555555543
No 8
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=11.95 E-value=3.1e+02 Score=21.25 Aligned_cols=23 Identities=17% Similarity=0.335 Sum_probs=16.2
Q ss_pred hhhhhhhHHhHHHHHHHhHHHHH
Q 008522 500 LKNKQSFMRDKIKILESSLNRAN 522 (563)
Q Consensus 500 LneELsflrsk~~~LE~sL~~A~ 522 (563)
+.+=+.|+..|++.|+..+....
T Consensus 86 ~~eA~~~l~~ri~~l~~~~~~l~ 108 (133)
T d1fxkc_ 86 FEDAMESIKSQKNELESTLQKMG 108 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44667888888888876665443
No 9
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=11.37 E-value=3.1e+02 Score=20.92 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=10.4
Q ss_pred hhHHHHHHHHHHHHhhhhhhhh
Q 008522 373 EMDNFIESLKESLYGAESRAES 394 (563)
Q Consensus 373 dmEn~IedLK~kvskAESRAe~ 394 (563)
+.+.++.+|+.++.--+.+...
T Consensus 62 ~~~e~~~~l~~~~e~l~~~i~~ 83 (107)
T d1fxka_ 62 AKDELTEELQEKLETLQLREKT 83 (107)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555444444444333
No 10
>d1hlva1 a.4.1.7 (A:1-66) DNA-binding domain of centromere binding protein B (CENP-B) {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.51 E-value=79 Score=23.71 Aligned_cols=30 Identities=17% Similarity=0.381 Sum_probs=24.2
Q ss_pred cccccchHHHHHHHHHHHHh-------hhhhhhHHHh
Q 008522 204 KSKMKNADQQRHILRMLEKS-------LARELDLEKK 233 (563)
Q Consensus 204 ~~~mqt~eqqR~iLrMLekS-------lA~EldLEkk 233 (563)
+-+.=|.++++.|++++|.- ||+++++++.
T Consensus 4 kRk~LT~~eK~~ii~~~e~g~k~sq~eIA~~fGv~~S 40 (66)
T d1hlva1 4 KRRQLTFREKSRIIQEVEENPDLRKGEIARRFNIPPS 40 (66)
T ss_dssp SSCCCCHHHHHHHHHHHHHCTTSCHHHHHHHHTCCHH
T ss_pred ccccCCHHHHHHHHHHHHcCCcchHHHHHHHhCCChh
Confidence 33445889999999999973 9999999864
Done!