Query 008523
Match_columns 563
No_of_seqs 234 out of 727
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 05:33:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008523.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008523hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ii2_A Phosphoenolpyruvate car 100.0 2E-131 6E-136 1073.1 39.4 409 142-550 2-431 (524)
2 2olr_A Phosphoenolpyruvate car 100.0 2E-128 6E-133 1048.4 40.3 410 131-551 9-454 (540)
3 1ytm_A Phosphoenolpyruvate car 100.0 6E-128 2E-132 1046.1 39.5 412 131-550 4-447 (532)
4 1j3b_A ATP-dependent phosphoen 100.0 2E-121 8E-126 994.2 39.8 416 132-549 2-441 (529)
5 2zci_A Phosphoenolpyruvate car 100.0 1.5E-26 5E-31 251.0 30.5 387 140-537 32-504 (610)
6 2faf_A Phosphoenolpyruvate car 100.0 4.1E-26 1.4E-30 247.1 30.0 398 140-553 24-527 (608)
7 3moe_A Phosphoenolpyruvate car 99.9 1.4E-24 4.7E-29 235.4 26.3 401 140-554 41-544 (624)
8 3tqf_A HPR(Ser) kinase; transf 97.7 1.7E-05 5.8E-10 76.0 3.0 49 321-370 4-56 (181)
9 1knx_A Probable HPR(Ser) kinas 97.4 4.7E-05 1.6E-09 78.5 2.8 47 320-367 134-183 (312)
10 1ko7_A HPR kinase/phosphatase; 97.4 7.1E-05 2.4E-09 77.1 4.1 47 319-366 130-179 (314)
11 2qmh_A HPR kinase/phosphorylas 97.2 0.00014 4.7E-09 71.0 2.5 49 318-367 19-70 (205)
12 4gp7_A Metallophosphoesterase; 94.3 0.011 3.6E-07 54.2 0.9 21 332-352 7-27 (171)
13 3tr0_A Guanylate kinase, GMP k 94.1 0.016 5.3E-07 53.3 1.6 20 333-352 6-25 (205)
14 1zp6_A Hypothetical protein AT 94.0 0.015 5.2E-07 52.9 1.5 21 332-352 7-27 (191)
15 1kgd_A CASK, peripheral plasma 94.0 0.015 5.2E-07 53.4 1.4 20 333-352 4-23 (180)
16 3uie_A Adenylyl-sulfate kinase 93.9 0.017 5.7E-07 53.8 1.4 21 332-352 23-43 (200)
17 1qhx_A CPT, protein (chloramph 93.8 0.018 6.2E-07 51.8 1.4 19 334-352 3-21 (178)
18 1znw_A Guanylate kinase, GMP k 93.7 0.021 7E-07 53.6 1.7 21 332-352 18-38 (207)
19 1z6g_A Guanylate kinase; struc 93.6 0.018 6.2E-07 54.9 1.2 21 332-352 21-41 (218)
20 2j41_A Guanylate kinase; GMP, 93.4 0.024 8.3E-07 52.0 1.6 20 333-352 5-24 (207)
21 3c8u_A Fructokinase; YP_612366 93.3 0.024 8.1E-07 53.2 1.4 21 332-352 20-40 (208)
22 3tau_A Guanylate kinase, GMP k 93.3 0.026 8.9E-07 53.1 1.6 21 332-352 6-26 (208)
23 1kag_A SKI, shikimate kinase I 93.1 0.022 7.4E-07 51.0 0.8 19 334-352 4-22 (173)
24 1s96_A Guanylate kinase, GMP k 93.1 0.03 1E-06 54.1 1.7 21 332-352 14-34 (219)
25 3a00_A Guanylate kinase, GMP k 93.0 0.025 8.5E-07 52.1 0.9 19 334-352 1-19 (186)
26 1lvg_A Guanylate kinase, GMP k 92.9 0.025 8.6E-07 53.0 0.8 20 333-352 3-22 (198)
27 4eun_A Thermoresistant glucoki 92.8 0.032 1.1E-06 51.9 1.5 21 332-352 27-47 (200)
28 1knq_A Gluconate kinase; ALFA/ 92.7 0.032 1.1E-06 50.3 1.3 20 333-352 7-26 (175)
29 3lnc_A Guanylate kinase, GMP k 92.7 0.033 1.1E-06 52.9 1.4 21 332-352 25-45 (231)
30 2qor_A Guanylate kinase; phosp 92.6 0.028 9.5E-07 52.5 0.8 20 333-352 11-30 (204)
31 3asz_A Uridine kinase; cytidin 92.6 0.035 1.2E-06 51.5 1.4 21 332-352 4-24 (211)
32 3ec2_A DNA replication protein 92.5 0.03 1E-06 50.8 0.8 20 333-352 37-56 (180)
33 3tif_A Uncharacterized ABC tra 92.4 0.043 1.5E-06 53.3 1.8 21 332-352 29-49 (235)
34 2pcj_A ABC transporter, lipopr 92.3 0.042 1.4E-06 52.9 1.6 21 332-352 28-48 (224)
35 2bdt_A BH3686; alpha-beta prot 92.3 0.031 1.1E-06 51.1 0.6 19 334-352 2-20 (189)
36 3vaa_A Shikimate kinase, SK; s 92.2 0.043 1.5E-06 50.9 1.5 21 332-352 23-43 (199)
37 1htw_A HI0065; nucleotide-bind 92.2 0.045 1.5E-06 50.3 1.5 21 332-352 31-51 (158)
38 3kb2_A SPBC2 prophage-derived 92.1 0.042 1.4E-06 48.7 1.2 17 336-352 3-19 (173)
39 3lw7_A Adenylate kinase relate 92.1 0.041 1.4E-06 48.2 1.1 17 336-352 3-19 (179)
40 1kht_A Adenylate kinase; phosp 92.0 0.045 1.5E-06 49.3 1.4 19 334-352 3-21 (192)
41 2ehv_A Hypothetical protein PH 91.9 0.047 1.6E-06 51.4 1.4 21 332-352 28-48 (251)
42 4a74_A DNA repair and recombin 91.9 0.045 1.5E-06 50.8 1.3 21 332-352 23-43 (231)
43 2rhm_A Putative kinase; P-loop 91.9 0.051 1.7E-06 49.2 1.6 19 334-352 5-23 (193)
44 2pez_A Bifunctional 3'-phospho 91.9 0.045 1.6E-06 49.6 1.2 21 332-352 3-23 (179)
45 1b0u_A Histidine permease; ABC 91.8 0.055 1.9E-06 53.5 1.8 21 332-352 30-50 (262)
46 1ly1_A Polynucleotide kinase; 91.5 0.051 1.7E-06 48.5 1.1 17 336-352 4-20 (181)
47 3trf_A Shikimate kinase, SK; a 91.5 0.056 1.9E-06 49.0 1.4 19 334-352 5-23 (185)
48 2cbz_A Multidrug resistance-as 91.5 0.063 2.2E-06 52.2 1.8 21 332-352 29-49 (237)
49 3ney_A 55 kDa erythrocyte memb 91.4 0.066 2.3E-06 51.4 1.8 21 332-352 17-37 (197)
50 3fvq_A Fe(3+) IONS import ATP- 91.4 0.067 2.3E-06 55.9 2.0 21 332-352 28-48 (359)
51 2kjq_A DNAA-related protein; s 91.3 0.07 2.4E-06 48.2 1.7 20 333-352 35-54 (149)
52 1nks_A Adenylate kinase; therm 91.2 0.06 2.1E-06 48.4 1.3 17 336-352 3-19 (194)
53 3iij_A Coilin-interacting nucl 91.2 0.052 1.8E-06 49.2 0.8 20 333-352 10-29 (180)
54 3b85_A Phosphate starvation-in 91.2 0.074 2.5E-06 51.0 1.9 21 332-352 20-40 (208)
55 2olj_A Amino acid ABC transpor 91.1 0.071 2.4E-06 53.0 1.8 21 332-352 48-68 (263)
56 1g6h_A High-affinity branched- 91.0 0.065 2.2E-06 52.7 1.4 21 332-352 31-51 (257)
57 2ff7_A Alpha-hemolysin translo 91.0 0.066 2.3E-06 52.5 1.4 21 332-352 33-53 (247)
58 2pze_A Cystic fibrosis transme 91.0 0.067 2.3E-06 51.7 1.4 21 332-352 32-52 (229)
59 1ji0_A ABC transporter; ATP bi 90.9 0.068 2.3E-06 52.0 1.4 21 332-352 30-50 (240)
60 2d2e_A SUFC protein; ABC-ATPas 90.9 0.068 2.3E-06 52.3 1.4 21 332-352 27-47 (250)
61 1mv5_A LMRA, multidrug resista 90.9 0.071 2.4E-06 51.9 1.5 21 332-352 26-46 (243)
62 2wwf_A Thymidilate kinase, put 90.8 0.08 2.7E-06 48.8 1.7 20 333-352 9-28 (212)
63 4g1u_C Hemin import ATP-bindin 90.8 0.07 2.4E-06 53.0 1.4 21 332-352 35-55 (266)
64 2ixe_A Antigen peptide transpo 90.8 0.079 2.7E-06 52.7 1.8 21 332-352 43-63 (271)
65 1cke_A CK, MSSA, protein (cyti 90.8 0.07 2.4E-06 49.8 1.3 19 334-352 5-23 (227)
66 3t61_A Gluconokinase; PSI-biol 90.8 0.056 1.9E-06 50.0 0.7 19 334-352 18-36 (202)
67 3gfo_A Cobalt import ATP-bindi 90.7 0.072 2.5E-06 53.3 1.4 21 332-352 32-52 (275)
68 2qt1_A Nicotinamide riboside k 90.7 0.081 2.8E-06 49.1 1.7 36 332-367 19-59 (207)
69 1vpl_A ABC transporter, ATP-bi 90.7 0.083 2.8E-06 52.3 1.8 21 332-352 39-59 (256)
70 3rlf_A Maltose/maltodextrin im 90.6 0.082 2.8E-06 55.7 1.8 21 332-352 27-47 (381)
71 2ghi_A Transport protein; mult 90.6 0.085 2.9E-06 52.1 1.8 21 332-352 44-64 (260)
72 2yyz_A Sugar ABC transporter, 90.6 0.083 2.8E-06 55.1 1.8 21 332-352 27-47 (359)
73 2yz2_A Putative ABC transporte 90.6 0.086 2.9E-06 52.2 1.8 21 332-352 31-51 (266)
74 2zu0_C Probable ATP-dependent 90.5 0.086 2.9E-06 52.2 1.8 21 332-352 44-64 (267)
75 1rj9_A FTSY, signal recognitio 90.5 0.074 2.5E-06 53.9 1.3 20 333-352 101-120 (304)
76 2it1_A 362AA long hypothetical 90.4 0.087 3E-06 55.0 1.8 21 332-352 27-47 (362)
77 1gvn_B Zeta; postsegregational 90.4 0.08 2.7E-06 52.9 1.5 20 333-352 32-51 (287)
78 1v43_A Sugar-binding transport 90.4 0.088 3E-06 55.1 1.8 21 332-352 35-55 (372)
79 1sgw_A Putative ABC transporte 90.4 0.068 2.3E-06 51.6 0.8 21 332-352 33-53 (214)
80 2plr_A DTMP kinase, probable t 90.3 0.076 2.6E-06 48.6 1.1 19 334-352 4-22 (213)
81 1nn5_A Similar to deoxythymidy 90.3 0.098 3.3E-06 48.2 1.8 20 333-352 8-27 (215)
82 3cm0_A Adenylate kinase; ATP-b 90.3 0.064 2.2E-06 48.5 0.6 19 334-352 4-22 (186)
83 2cdn_A Adenylate kinase; phosp 90.2 0.096 3.3E-06 48.3 1.7 21 332-352 18-38 (201)
84 3aez_A Pantothenate kinase; tr 90.2 0.082 2.8E-06 53.8 1.3 21 332-352 88-108 (312)
85 2ihy_A ABC transporter, ATP-bi 90.2 0.085 2.9E-06 52.8 1.4 21 332-352 45-65 (279)
86 2yvu_A Probable adenylyl-sulfa 90.2 0.088 3E-06 48.0 1.4 20 333-352 12-31 (186)
87 1z47_A CYSA, putative ABC-tran 90.2 0.085 2.9E-06 55.0 1.4 21 332-352 39-59 (355)
88 2jeo_A Uridine-cytidine kinase 90.1 0.087 3E-06 50.7 1.3 21 332-352 23-43 (245)
89 1g29_1 MALK, maltose transport 90.1 0.088 3E-06 55.1 1.4 21 332-352 27-47 (372)
90 2nq2_C Hypothetical ABC transp 90.0 0.089 3.1E-06 51.8 1.4 21 332-352 29-49 (253)
91 1rz3_A Hypothetical protein rb 89.9 0.097 3.3E-06 48.8 1.5 21 332-352 20-40 (201)
92 2qi9_C Vitamin B12 import ATP- 89.8 0.095 3.3E-06 51.6 1.4 21 332-352 24-44 (249)
93 2eyu_A Twitching motility prot 89.8 0.095 3.3E-06 51.8 1.4 21 332-352 23-43 (261)
94 2w0m_A SSO2452; RECA, SSPF, un 89.8 0.097 3.3E-06 48.3 1.4 21 332-352 21-41 (235)
95 2bwj_A Adenylate kinase 5; pho 89.7 0.054 1.8E-06 49.3 -0.4 19 334-352 12-30 (199)
96 2vp4_A Deoxynucleoside kinase; 89.7 0.097 3.3E-06 49.9 1.3 21 332-352 18-38 (230)
97 2cvh_A DNA repair and recombin 89.7 0.11 3.7E-06 47.9 1.6 21 332-352 18-38 (220)
98 2vli_A Antibiotic resistance p 89.7 0.097 3.3E-06 47.1 1.3 19 334-352 5-23 (183)
99 3d31_A Sulfate/molybdate ABC t 89.6 0.08 2.7E-06 54.9 0.7 21 332-352 24-44 (348)
100 2bbw_A Adenylate kinase 4, AK4 89.6 0.1 3.5E-06 50.0 1.4 19 334-352 27-45 (246)
101 2v54_A DTMP kinase, thymidylat 89.6 0.1 3.6E-06 47.7 1.4 20 333-352 3-22 (204)
102 2bbs_A Cystic fibrosis transme 89.5 0.12 4.2E-06 52.0 2.0 21 332-352 62-82 (290)
103 2jaq_A Deoxyguanosine kinase; 89.4 0.099 3.4E-06 47.5 1.1 17 336-352 2-18 (205)
104 2v9p_A Replication protein E1; 89.4 0.12 4.1E-06 52.7 1.8 21 332-352 124-144 (305)
105 2c95_A Adenylate kinase 1; tra 89.4 0.13 4.3E-06 46.7 1.7 20 333-352 8-27 (196)
106 2i3b_A HCR-ntpase, human cance 89.3 0.094 3.2E-06 49.5 0.9 19 334-352 1-19 (189)
107 4e22_A Cytidylate kinase; P-lo 89.3 0.12 4E-06 50.3 1.6 21 332-352 25-45 (252)
108 1n0w_A DNA repair protein RAD5 89.3 0.11 3.8E-06 48.6 1.4 21 332-352 22-42 (243)
109 2pjz_A Hypothetical protein ST 89.3 0.12 4.1E-06 51.3 1.7 20 332-352 29-48 (263)
110 1m7g_A Adenylylsulfate kinase; 89.2 0.11 3.9E-06 48.5 1.3 21 332-352 23-43 (211)
111 3b9q_A Chloroplast SRP recepto 89.1 0.1 3.6E-06 52.7 1.1 47 303-352 71-118 (302)
112 1jbk_A CLPB protein; beta barr 89.1 0.13 4.4E-06 45.3 1.5 19 334-352 43-61 (195)
113 2qz4_A Paraplegin; AAA+, SPG7, 89.0 0.24 8.3E-06 46.9 3.5 45 303-352 13-57 (262)
114 1gtv_A TMK, thymidylate kinase 89.0 0.067 2.3E-06 49.4 -0.4 17 336-352 2-18 (214)
115 1oxx_K GLCV, glucose, ABC tran 89.0 0.076 2.6E-06 55.1 0.0 21 332-352 29-49 (353)
116 3tui_C Methionine import ATP-b 88.9 0.14 4.6E-06 53.8 1.8 21 332-352 52-72 (366)
117 3bos_A Putative DNA replicatio 88.9 0.13 4.4E-06 47.5 1.5 20 333-352 51-70 (242)
118 2p5t_B PEZT; postsegregational 88.8 0.099 3.4E-06 50.7 0.7 20 333-352 31-50 (253)
119 1y63_A LMAJ004144AAA protein; 88.8 0.14 4.7E-06 47.0 1.5 20 333-352 9-28 (184)
120 1tev_A UMP-CMP kinase; ploop, 88.8 0.12 4E-06 46.6 1.1 19 334-352 3-21 (196)
121 1ye8_A Protein THEP1, hypothet 88.7 0.13 4.3E-06 47.9 1.3 17 336-352 2-18 (178)
122 2ze6_A Isopentenyl transferase 88.6 0.12 4.1E-06 50.4 1.1 17 336-352 3-19 (253)
123 3gd7_A Fusion complex of cysti 88.5 0.16 5.3E-06 53.6 2.0 21 332-352 45-65 (390)
124 1sq5_A Pantothenate kinase; P- 88.5 0.14 4.8E-06 51.4 1.5 21 332-352 78-98 (308)
125 2z0h_A DTMP kinase, thymidylat 88.4 0.12 4.1E-06 46.9 0.9 17 336-352 2-18 (197)
126 3fb4_A Adenylate kinase; psych 88.3 0.12 4.2E-06 48.0 0.9 17 336-352 2-18 (216)
127 1ex7_A Guanylate kinase; subst 88.3 0.12 4.1E-06 49.0 0.8 18 335-352 2-19 (186)
128 1ixz_A ATP-dependent metallopr 88.2 0.12 4.2E-06 49.4 0.9 16 337-352 52-67 (254)
129 2p65_A Hypothetical protein PF 88.2 0.12 4.2E-06 45.6 0.8 19 334-352 43-61 (187)
130 1via_A Shikimate kinase; struc 88.2 0.13 4.3E-06 46.5 0.9 17 336-352 6-22 (175)
131 2pbr_A DTMP kinase, thymidylat 88.1 0.14 4.7E-06 46.2 1.1 17 336-352 2-18 (195)
132 1pui_A ENGB, probable GTP-bind 88.0 0.17 5.9E-06 46.2 1.7 21 332-352 24-44 (210)
133 3nh6_A ATP-binding cassette SU 88.0 0.12 4.1E-06 52.7 0.7 21 332-352 78-98 (306)
134 3e70_C DPA, signal recognition 87.9 0.14 4.7E-06 52.7 1.0 21 332-352 127-147 (328)
135 3dl0_A Adenylate kinase; phosp 87.8 0.14 4.6E-06 47.8 0.9 17 336-352 2-18 (216)
136 2onk_A Molybdate/tungstate ABC 87.8 0.17 5.9E-06 49.4 1.7 18 335-352 25-42 (240)
137 1u0l_A Probable GTPase ENGC; p 87.8 0.19 6.5E-06 50.3 2.0 30 323-352 149-187 (301)
138 1nlf_A Regulatory protein REPA 87.7 0.17 5.8E-06 49.5 1.6 21 332-352 28-48 (279)
139 1e6c_A Shikimate kinase; phosp 87.6 0.14 4.7E-06 45.6 0.8 18 335-352 3-20 (173)
140 1lv7_A FTSH; alpha/beta domain 87.6 0.14 4.8E-06 49.1 0.9 44 303-352 19-63 (257)
141 1jjv_A Dephospho-COA kinase; P 87.5 0.16 5.3E-06 47.0 1.1 17 336-352 4-20 (206)
142 2pt5_A Shikimate kinase, SK; a 87.4 0.16 5.4E-06 45.1 1.0 17 336-352 2-18 (168)
143 3cf0_A Transitional endoplasmi 87.4 0.17 5.9E-06 50.3 1.4 20 333-352 48-67 (301)
144 1aky_A Adenylate kinase; ATP:A 87.4 0.18 6.3E-06 47.2 1.5 20 333-352 3-22 (220)
145 2w58_A DNAI, primosome compone 87.3 0.18 6.2E-06 46.3 1.4 18 335-352 55-72 (202)
146 3syl_A Protein CBBX; photosynt 87.3 0.22 7.4E-06 48.7 2.0 21 332-352 65-85 (309)
147 3b9p_A CG5977-PA, isoform A; A 87.2 0.17 6E-06 49.3 1.3 20 333-352 53-72 (297)
148 1ukz_A Uridylate kinase; trans 87.2 0.18 6.3E-06 46.3 1.3 19 334-352 15-33 (203)
149 1zak_A Adenylate kinase; ATP:A 87.1 0.18 6E-06 47.4 1.2 19 334-352 5-23 (222)
150 1zd8_A GTP:AMP phosphotransfer 87.1 0.2 6.8E-06 47.3 1.6 19 334-352 7-25 (227)
151 3nwj_A ATSK2; P loop, shikimat 86.9 0.16 5.3E-06 50.2 0.8 19 334-352 48-66 (250)
152 2og2_A Putative signal recogni 86.9 0.17 5.7E-06 52.8 1.0 46 303-352 128-175 (359)
153 2dpy_A FLII, flagellum-specifi 86.9 0.22 7.4E-06 53.1 1.9 20 333-352 156-175 (438)
154 2dr3_A UPF0273 protein PH0284; 86.9 0.2 6.7E-06 46.9 1.4 21 332-352 21-41 (247)
155 1qf9_A UMP/CMP kinase, protein 86.9 0.19 6.6E-06 45.0 1.3 18 335-352 7-24 (194)
156 2if2_A Dephospho-COA kinase; a 86.8 0.2 6.9E-06 46.1 1.4 17 336-352 3-19 (204)
157 4eaq_A DTMP kinase, thymidylat 86.8 0.19 6.7E-06 48.4 1.3 20 333-352 25-44 (229)
158 2iyv_A Shikimate kinase, SK; t 86.7 0.17 5.9E-06 45.7 0.9 17 336-352 4-20 (184)
159 3h4m_A Proteasome-activating n 86.7 0.21 7.3E-06 48.2 1.6 20 333-352 50-69 (285)
160 2x8a_A Nuclear valosin-contain 86.5 0.17 5.8E-06 50.1 0.8 16 337-352 47-62 (274)
161 1cr0_A DNA primase/helicase; R 86.4 0.24 8.1E-06 48.7 1.8 21 332-352 33-53 (296)
162 1iy2_A ATP-dependent metallopr 86.3 0.18 6.3E-06 49.1 0.9 16 337-352 76-91 (278)
163 2obl_A ESCN; ATPase, hydrolase 86.1 0.24 8.3E-06 51.1 1.7 20 333-352 70-89 (347)
164 2gj8_A MNME, tRNA modification 86.1 0.24 8.1E-06 44.5 1.5 21 332-352 2-22 (172)
165 3a4m_A L-seryl-tRNA(SEC) kinas 86.1 0.22 7.4E-06 48.6 1.2 19 334-352 4-22 (260)
166 2lkc_A Translation initiation 86.0 0.26 9E-06 43.3 1.7 22 331-352 5-26 (178)
167 1oix_A RAS-related protein RAB 86.0 0.29 1E-05 44.7 2.0 17 336-352 31-47 (191)
168 1vht_A Dephospho-COA kinase; s 86.0 0.23 7.8E-06 46.4 1.3 19 334-352 4-22 (218)
169 1in4_A RUVB, holliday junction 86.0 0.19 6.4E-06 50.8 0.8 18 335-352 52-69 (334)
170 1odf_A YGR205W, hypothetical 3 85.9 0.22 7.7E-06 50.0 1.3 20 333-352 30-49 (290)
171 1uf9_A TT1252 protein; P-loop, 85.9 0.25 8.6E-06 45.0 1.5 19 334-352 8-26 (203)
172 3n70_A Transport activator; si 85.8 0.22 7.4E-06 44.1 1.0 20 333-352 23-42 (145)
173 3uk6_A RUVB-like 2; hexameric 85.7 0.25 8.6E-06 49.5 1.5 19 334-352 70-88 (368)
174 3sop_A Neuronal-specific septi 85.6 0.25 8.7E-06 49.0 1.5 17 336-352 4-20 (270)
175 2f1r_A Molybdopterin-guanine d 85.5 0.14 4.8E-06 47.7 -0.4 18 335-352 3-20 (171)
176 3tlx_A Adenylate kinase 2; str 85.4 0.25 8.7E-06 47.7 1.4 19 334-352 29-47 (243)
177 3kta_A Chromosome segregation 85.4 0.27 9.4E-06 44.3 1.5 17 336-352 28-44 (182)
178 2gza_A Type IV secretion syste 85.3 0.24 8.1E-06 51.1 1.1 21 332-352 173-193 (361)
179 1ltq_A Polynucleotide kinase; 85.1 0.24 8.3E-06 48.4 1.1 17 336-352 4-20 (301)
180 2px0_A Flagellar biosynthesis 85.1 0.28 9.6E-06 49.4 1.6 21 332-352 103-123 (296)
181 3co5_A Putative two-component 85.1 0.24 8.2E-06 43.8 0.9 19 334-352 27-45 (143)
182 3cr8_A Sulfate adenylyltranfer 85.0 0.19 6.4E-06 55.3 0.3 21 332-352 367-387 (552)
183 1njg_A DNA polymerase III subu 84.8 0.29 9.8E-06 44.4 1.4 18 335-352 46-63 (250)
184 1zuh_A Shikimate kinase; alpha 84.6 0.27 9.4E-06 43.8 1.1 18 335-352 8-25 (168)
185 1lw7_A Transcriptional regulat 84.6 0.22 7.7E-06 50.9 0.6 19 334-352 170-188 (365)
186 2yhs_A FTSY, cell division pro 84.6 0.29 1E-05 53.4 1.5 21 332-352 291-311 (503)
187 2yv5_A YJEQ protein; hydrolase 84.5 0.31 1E-05 49.0 1.6 20 333-352 164-183 (302)
188 1nrj_B SR-beta, signal recogni 84.5 0.35 1.2E-05 44.5 1.9 19 334-352 12-30 (218)
189 2yl4_A ATP-binding cassette SU 84.4 0.35 1.2E-05 53.0 2.1 21 332-352 368-388 (595)
190 2chg_A Replication factor C sm 84.4 0.26 8.9E-06 44.3 0.9 17 336-352 40-56 (226)
191 1d2n_A N-ethylmaleimide-sensit 84.4 0.26 8.8E-06 47.7 0.9 18 335-352 65-82 (272)
192 3b60_A Lipid A export ATP-bind 84.4 0.34 1.2E-05 52.9 2.0 21 332-352 367-387 (582)
193 1e4v_A Adenylate kinase; trans 84.4 0.28 9.4E-06 45.9 1.1 17 336-352 2-18 (214)
194 1g8f_A Sulfate adenylyltransfe 84.3 0.22 7.5E-06 54.4 0.4 21 332-352 393-413 (511)
195 1vma_A Cell division protein F 84.3 0.28 9.5E-06 49.9 1.1 43 304-352 79-122 (306)
196 1pzn_A RAD51, DNA repair and r 84.2 0.29 9.9E-06 50.3 1.2 21 332-352 129-149 (349)
197 3lda_A DNA repair protein RAD5 84.0 0.33 1.1E-05 51.2 1.6 21 332-352 176-196 (400)
198 2ewv_A Twitching motility prot 84.0 0.32 1.1E-05 50.5 1.5 21 332-352 134-154 (372)
199 2pt7_A CAG-ALFA; ATPase, prote 84.0 0.29 1E-05 49.9 1.1 21 332-352 169-189 (330)
200 1a7j_A Phosphoribulokinase; tr 84.0 0.34 1.1E-05 48.5 1.5 19 334-352 5-23 (290)
201 3tqc_A Pantothenate kinase; bi 84.0 0.29 1E-05 50.2 1.1 18 335-352 93-110 (321)
202 3be4_A Adenylate kinase; malar 83.9 0.35 1.2E-05 45.4 1.6 19 334-352 5-23 (217)
203 2xb4_A Adenylate kinase; ATP-b 83.8 0.28 9.5E-06 46.5 0.9 17 336-352 2-18 (223)
204 1np6_A Molybdopterin-guanine d 83.8 0.34 1.2E-05 45.2 1.4 18 335-352 7-24 (174)
205 1p5z_B DCK, deoxycytidine kina 83.8 0.33 1.1E-05 47.0 1.3 21 332-352 22-42 (263)
206 1xjc_A MOBB protein homolog; s 83.7 0.32 1.1E-05 45.5 1.2 18 335-352 5-22 (169)
207 2qby_A CDC6 homolog 1, cell di 83.6 0.33 1.1E-05 48.1 1.3 20 333-352 44-63 (386)
208 3eie_A Vacuolar protein sortin 83.6 0.33 1.1E-05 48.6 1.4 45 303-352 25-69 (322)
209 1l8q_A Chromosomal replication 83.6 0.28 9.6E-06 48.7 0.8 19 334-352 37-55 (324)
210 4a82_A Cystic fibrosis transme 83.6 0.37 1.3E-05 52.7 1.8 21 332-352 365-385 (578)
211 1ofh_A ATP-dependent HSL prote 83.4 0.3 1E-05 47.3 0.9 20 333-352 49-68 (310)
212 3b5x_A Lipid A export ATP-bind 83.3 0.37 1.3E-05 52.7 1.7 21 332-352 367-387 (582)
213 1ak2_A Adenylate kinase isoenz 83.2 0.39 1.3E-05 45.6 1.6 20 333-352 15-34 (233)
214 3r20_A Cytidylate kinase; stru 83.2 0.33 1.1E-05 47.6 1.1 18 335-352 10-27 (233)
215 1svm_A Large T antigen; AAA+ f 83.1 0.38 1.3E-05 50.4 1.6 21 332-352 167-187 (377)
216 4fcw_A Chaperone protein CLPB; 83.1 0.33 1.1E-05 47.3 1.0 18 335-352 48-65 (311)
217 2npi_A Protein CLP1; CLP1-PCF1 82.9 0.35 1.2E-05 51.9 1.2 21 332-352 136-156 (460)
218 2rcn_A Probable GTPase ENGC; Y 82.9 0.39 1.3E-05 50.1 1.6 20 333-352 214-233 (358)
219 3qf4_B Uncharacterized ABC tra 82.9 0.44 1.5E-05 52.3 2.1 21 332-352 379-399 (598)
220 3ux8_A Excinuclease ABC, A sub 82.9 0.37 1.3E-05 53.5 1.5 20 332-351 346-365 (670)
221 1xwi_A SKD1 protein; VPS4B, AA 82.8 0.36 1.2E-05 48.7 1.3 19 334-352 45-63 (322)
222 2ce2_X GTPase HRAS; signaling 82.8 0.42 1.4E-05 40.9 1.5 17 336-352 5-21 (166)
223 3ux8_A Excinuclease ABC, A sub 82.8 0.37 1.3E-05 53.5 1.5 20 332-351 42-61 (670)
224 1tf7_A KAIC; homohexamer, hexa 82.8 0.37 1.3E-05 51.9 1.4 21 332-352 37-57 (525)
225 1uj2_A Uridine-cytidine kinase 82.7 0.36 1.2E-05 46.5 1.1 18 335-352 23-40 (252)
226 2f9l_A RAB11B, member RAS onco 82.7 0.38 1.3E-05 43.9 1.2 17 336-352 7-23 (199)
227 2zej_A Dardarin, leucine-rich 82.6 0.35 1.2E-05 43.6 1.0 17 336-352 4-20 (184)
228 3zvl_A Bifunctional polynucleo 82.6 0.4 1.4E-05 50.3 1.5 20 333-352 257-276 (416)
229 2r62_A Cell division protease 82.6 0.16 5.6E-06 48.7 -1.3 17 336-352 46-62 (268)
230 3t15_A Ribulose bisphosphate c 82.6 0.39 1.3E-05 47.7 1.4 18 335-352 37-54 (293)
231 3jvv_A Twitching mobility prot 82.5 0.4 1.4E-05 49.7 1.4 19 334-352 123-141 (356)
232 3ake_A Cytidylate kinase; CMP 82.5 0.37 1.3E-05 43.9 1.1 17 336-352 4-20 (208)
233 1yqt_A RNAse L inhibitor; ATP- 82.5 0.44 1.5E-05 52.0 1.8 21 332-352 45-65 (538)
234 3hws_A ATP-dependent CLP prote 82.4 0.33 1.1E-05 49.2 0.8 20 333-352 50-69 (363)
235 1sxj_C Activator 1 40 kDa subu 82.2 0.35 1.2E-05 48.5 0.9 16 337-352 49-64 (340)
236 2wji_A Ferrous iron transport 82.1 0.43 1.5E-05 42.2 1.3 17 336-352 5-21 (165)
237 3ld9_A DTMP kinase, thymidylat 82.0 0.43 1.5E-05 46.5 1.4 21 332-352 19-39 (223)
238 2ocp_A DGK, deoxyguanosine kin 81.8 0.42 1.4E-05 45.5 1.3 19 334-352 2-20 (241)
239 1fnn_A CDC6P, cell division co 81.8 0.48 1.6E-05 47.3 1.7 17 336-352 46-62 (389)
240 2v1u_A Cell division control p 81.8 0.35 1.2E-05 48.1 0.7 20 333-352 43-62 (387)
241 4tmk_A Protein (thymidylate ki 81.8 0.47 1.6E-05 45.6 1.5 19 334-352 3-21 (213)
242 4edh_A DTMP kinase, thymidylat 81.6 0.41 1.4E-05 45.9 1.1 20 333-352 5-24 (213)
243 1t9h_A YLOQ, probable GTPase E 81.5 0.24 8.3E-06 50.5 -0.6 20 333-352 172-191 (307)
244 3m6a_A ATP-dependent protease 81.4 0.42 1.5E-05 52.0 1.2 20 333-352 107-126 (543)
245 3j16_B RLI1P; ribosome recycli 81.4 0.5 1.7E-05 52.5 1.8 21 332-352 101-121 (608)
246 1nij_A Hypothetical protein YJ 81.3 0.5 1.7E-05 47.6 1.7 18 335-352 5-22 (318)
247 3v9p_A DTMP kinase, thymidylat 81.2 0.44 1.5E-05 46.4 1.1 20 333-352 24-43 (227)
248 3qf4_A ABC transporter, ATP-bi 81.2 0.51 1.8E-05 51.8 1.8 21 332-352 367-387 (587)
249 1kao_A RAP2A; GTP-binding prot 81.2 0.49 1.7E-05 40.6 1.3 17 336-352 5-21 (167)
250 3lv8_A DTMP kinase, thymidylat 81.2 0.5 1.7E-05 46.3 1.5 19 334-352 27-45 (236)
251 3ozx_A RNAse L inhibitor; ATP 81.1 0.57 2E-05 51.2 2.1 30 322-352 14-43 (538)
252 1sxj_E Activator 1 40 kDa subu 81.1 0.41 1.4E-05 47.7 0.9 16 337-352 39-54 (354)
253 2qag_B Septin-6, protein NEDD5 81.1 0.54 1.8E-05 50.3 1.9 21 332-352 38-60 (427)
254 2f6r_A COA synthase, bifunctio 81.1 0.46 1.6E-05 47.0 1.3 18 335-352 76-93 (281)
255 3ozx_A RNAse L inhibitor; ATP 80.9 0.48 1.6E-05 51.8 1.4 21 332-352 292-312 (538)
256 2wjg_A FEOB, ferrous iron tran 80.9 0.5 1.7E-05 42.1 1.3 18 335-352 8-25 (188)
257 1u8z_A RAS-related protein RAL 80.9 0.51 1.7E-05 40.5 1.3 17 336-352 6-22 (168)
258 1z2a_A RAS-related protein RAB 80.8 0.51 1.7E-05 40.7 1.3 17 336-352 7-23 (168)
259 2qgz_A Helicase loader, putati 80.7 0.5 1.7E-05 47.6 1.4 19 334-352 152-170 (308)
260 3pih_A Uvrabc system protein A 80.6 0.56 1.9E-05 54.7 1.9 22 332-353 22-43 (916)
261 3pfi_A Holliday junction ATP-d 80.6 0.43 1.5E-05 47.4 0.9 17 336-352 57-73 (338)
262 2dyk_A GTP-binding protein; GT 80.6 0.52 1.8E-05 40.5 1.3 17 336-352 3-19 (161)
263 1ek0_A Protein (GTP-binding pr 80.6 0.52 1.8E-05 40.6 1.3 17 336-352 5-21 (170)
264 2vf7_A UVRA2, excinuclease ABC 80.6 0.47 1.6E-05 54.8 1.3 22 332-353 34-55 (842)
265 3q72_A GTP-binding protein RAD 80.5 0.57 1.9E-05 40.6 1.5 17 336-352 4-20 (166)
266 2qby_B CDC6 homolog 3, cell di 80.4 0.61 2.1E-05 46.6 1.9 19 334-352 45-63 (384)
267 2ged_A SR-beta, signal recogni 80.4 0.53 1.8E-05 42.2 1.3 19 334-352 48-66 (193)
268 3tmk_A Thymidylate kinase; pho 80.3 0.61 2.1E-05 45.0 1.8 20 333-352 4-23 (216)
269 1m8p_A Sulfate adenylyltransfe 80.3 0.52 1.8E-05 51.9 1.5 21 332-352 394-414 (573)
270 1ky3_A GTP-binding protein YPT 80.2 0.55 1.9E-05 41.1 1.3 17 336-352 10-26 (182)
271 1c1y_A RAS-related protein RAP 80.2 0.55 1.9E-05 40.5 1.3 17 336-352 5-21 (167)
272 1q3t_A Cytidylate kinase; nucl 80.2 0.6 2.1E-05 44.4 1.7 20 333-352 15-34 (236)
273 1g16_A RAS-related protein SEC 80.2 0.59 2E-05 40.4 1.5 17 336-352 5-21 (170)
274 2zts_A Putative uncharacterize 80.2 0.54 1.9E-05 43.9 1.4 21 332-352 28-48 (251)
275 3q85_A GTP-binding protein REM 80.1 0.51 1.8E-05 41.0 1.1 17 336-352 4-20 (169)
276 1zu4_A FTSY; GTPase, signal re 80.1 0.48 1.6E-05 48.3 1.0 21 332-352 103-123 (320)
277 2fn4_A P23, RAS-related protei 80.0 0.59 2E-05 40.8 1.5 18 335-352 10-27 (181)
278 2ygr_A Uvrabc system protein A 80.0 0.54 1.8E-05 55.2 1.5 22 332-353 44-65 (993)
279 2r6f_A Excinuclease ABC subuni 79.9 0.56 1.9E-05 55.0 1.6 22 332-353 42-63 (972)
280 1z08_A RAS-related protein RAB 79.8 0.57 2E-05 40.6 1.3 17 336-352 8-24 (170)
281 2bjv_A PSP operon transcriptio 79.6 0.48 1.7E-05 45.5 0.9 18 335-352 30-47 (265)
282 2nzj_A GTP-binding protein REM 79.5 0.59 2E-05 40.7 1.3 17 336-352 6-22 (175)
283 3bk7_A ABC transporter ATP-bin 79.5 0.63 2.2E-05 51.6 1.8 21 332-352 115-135 (607)
284 2c9o_A RUVB-like 1; hexameric 79.5 0.56 1.9E-05 49.5 1.4 19 334-352 63-81 (456)
285 3d8b_A Fidgetin-like protein 1 79.4 0.62 2.1E-05 47.5 1.6 21 332-352 115-135 (357)
286 3pqc_A Probable GTP-binding pr 79.4 0.63 2.2E-05 41.3 1.5 18 335-352 24-41 (195)
287 1um8_A ATP-dependent CLP prote 79.2 0.51 1.7E-05 48.0 0.9 19 334-352 72-90 (376)
288 1r8s_A ADP-ribosylation factor 79.1 0.63 2.2E-05 40.2 1.3 17 336-352 2-18 (164)
289 1g8p_A Magnesium-chelatase 38 79.0 0.45 1.6E-05 47.0 0.5 16 337-352 48-63 (350)
290 2erx_A GTP-binding protein DI- 79.0 0.64 2.2E-05 40.2 1.3 17 336-352 5-21 (172)
291 1wms_A RAB-9, RAB9, RAS-relate 78.9 0.64 2.2E-05 40.7 1.3 17 336-352 9-25 (177)
292 1r2q_A RAS-related protein RAB 78.8 0.65 2.2E-05 40.0 1.3 17 336-352 8-24 (170)
293 2y8e_A RAB-protein 6, GH09086P 78.8 0.69 2.4E-05 40.3 1.5 17 336-352 16-32 (179)
294 1p9r_A General secretion pathw 78.7 0.63 2.2E-05 49.3 1.5 20 333-352 166-185 (418)
295 1hqc_A RUVB; extended AAA-ATPa 78.6 0.47 1.6E-05 46.5 0.4 19 334-352 38-56 (324)
296 1upt_A ARL1, ADP-ribosylation 78.5 0.67 2.3E-05 40.2 1.3 18 335-352 8-25 (171)
297 3j16_B RLI1P; ribosome recycli 78.5 0.69 2.3E-05 51.4 1.7 21 332-352 376-396 (608)
298 2qp9_X Vacuolar protein sortin 78.4 0.55 1.9E-05 48.0 0.9 18 335-352 85-102 (355)
299 4b4t_M 26S protease regulatory 78.4 0.6 2E-05 50.0 1.1 18 335-352 216-233 (434)
300 3bc1_A RAS-related protein RAB 78.2 0.68 2.3E-05 40.9 1.3 17 336-352 13-29 (195)
301 1tf7_A KAIC; homohexamer, hexa 78.2 0.67 2.3E-05 49.9 1.5 21 332-352 279-299 (525)
302 3umf_A Adenylate kinase; rossm 78.2 0.65 2.2E-05 44.9 1.3 21 332-352 27-47 (217)
303 3con_A GTPase NRAS; structural 78.2 0.69 2.3E-05 41.3 1.3 17 336-352 23-39 (190)
304 1yqt_A RNAse L inhibitor; ATP- 78.0 0.69 2.4E-05 50.4 1.6 21 332-352 310-330 (538)
305 3a8t_A Adenylate isopentenyltr 78.0 0.67 2.3E-05 48.2 1.4 20 333-352 39-58 (339)
306 1z0j_A RAB-22, RAS-related pro 78.0 0.71 2.4E-05 39.9 1.3 17 336-352 8-24 (170)
307 2grj_A Dephospho-COA kinase; T 77.8 0.65 2.2E-05 43.8 1.1 18 335-352 13-30 (192)
308 3tw8_B RAS-related protein RAB 77.8 0.71 2.4E-05 40.3 1.3 17 336-352 11-27 (181)
309 1sxj_D Activator 1 41 kDa subu 77.7 0.6 2.1E-05 46.1 0.9 16 337-352 61-76 (353)
310 3pvs_A Replication-associated 77.7 0.64 2.2E-05 49.5 1.1 18 335-352 51-68 (447)
311 2cxx_A Probable GTP-binding pr 77.6 0.77 2.6E-05 40.7 1.5 17 336-352 3-19 (190)
312 3hr8_A Protein RECA; alpha and 77.6 0.67 2.3E-05 48.2 1.3 20 333-352 60-79 (356)
313 4f4c_A Multidrug resistance pr 77.6 1 3.4E-05 54.3 2.9 21 332-352 1103-1123(1321)
314 2zr9_A Protein RECA, recombina 77.6 0.75 2.6E-05 47.4 1.6 20 333-352 60-79 (349)
315 2a9k_A RAS-related protein RAL 77.5 0.74 2.5E-05 40.5 1.3 18 335-352 19-36 (187)
316 4dsu_A GTPase KRAS, isoform 2B 77.5 0.74 2.5E-05 40.7 1.3 17 336-352 6-22 (189)
317 1moz_A ARL1, ADP-ribosylation 77.5 0.78 2.7E-05 40.5 1.5 20 333-352 17-36 (183)
318 3ihw_A Centg3; RAS, centaurin, 77.4 0.73 2.5E-05 41.7 1.3 17 336-352 22-38 (184)
319 1x6v_B Bifunctional 3'-phospho 77.3 0.72 2.5E-05 51.6 1.5 20 333-352 51-70 (630)
320 3vfd_A Spastin; ATPase, microt 77.3 0.71 2.4E-05 47.4 1.3 20 333-352 147-166 (389)
321 1svi_A GTP-binding protein YSX 77.3 0.79 2.7E-05 41.0 1.5 19 334-352 23-41 (195)
322 2z43_A DNA repair and recombin 77.3 0.78 2.7E-05 46.2 1.6 21 332-352 105-125 (324)
323 3k1j_A LON protease, ATP-depen 77.2 0.6 2.1E-05 51.2 0.8 19 334-352 60-78 (604)
324 2fu5_C RAS-related protein RAB 77.1 0.87 3E-05 40.3 1.7 17 336-352 10-26 (183)
325 2g6b_A RAS-related protein RAB 77.1 0.77 2.6E-05 40.3 1.3 17 336-352 12-28 (180)
326 1sky_E F1-ATPase, F1-ATP synth 77.1 0.67 2.3E-05 50.2 1.1 19 334-352 151-169 (473)
327 2oap_1 GSPE-2, type II secreti 77.0 0.72 2.4E-05 50.1 1.3 21 332-352 258-278 (511)
328 2bov_A RAla, RAS-related prote 77.0 0.78 2.7E-05 41.3 1.3 18 335-352 15-32 (206)
329 2hxs_A RAB-26, RAS-related pro 76.9 0.79 2.7E-05 40.2 1.3 17 336-352 8-24 (178)
330 1v5w_A DMC1, meiotic recombina 76.9 0.72 2.5E-05 47.0 1.2 21 332-352 120-140 (343)
331 3t5g_A GTP-binding protein RHE 76.9 0.84 2.9E-05 40.3 1.5 17 336-352 8-24 (181)
332 4b4t_L 26S protease subunit RP 76.8 0.7 2.4E-05 49.5 1.1 18 335-352 216-233 (437)
333 1mh1_A RAC1; GTP-binding, GTPa 76.8 0.73 2.5E-05 40.6 1.1 17 336-352 7-23 (186)
334 1z0f_A RAB14, member RAS oncog 76.7 0.8 2.8E-05 39.9 1.3 18 335-352 16-33 (179)
335 3sr0_A Adenylate kinase; phosp 76.7 0.73 2.5E-05 44.0 1.1 17 336-352 2-18 (206)
336 4b4t_K 26S protease regulatory 76.7 0.7 2.4E-05 49.3 1.1 46 303-352 179-224 (428)
337 2zan_A Vacuolar protein sortin 76.7 0.74 2.5E-05 48.6 1.3 19 334-352 167-185 (444)
338 1fzq_A ADP-ribosylation factor 76.7 0.85 2.9E-05 41.0 1.5 19 334-352 16-34 (181)
339 3exa_A TRNA delta(2)-isopenten 76.6 0.71 2.4E-05 47.8 1.1 19 334-352 3-21 (322)
340 2efe_B Small GTP-binding prote 76.6 0.8 2.7E-05 40.2 1.3 17 336-352 14-30 (181)
341 2axn_A 6-phosphofructo-2-kinas 76.5 1.1 3.6E-05 48.8 2.5 19 334-352 35-53 (520)
342 3bk7_A ABC transporter ATP-bin 76.5 0.81 2.8E-05 50.8 1.6 21 332-352 380-400 (607)
343 2bme_A RAB4A, RAS-related prot 76.5 0.87 3E-05 40.3 1.5 17 336-352 12-28 (186)
344 2qm8_A GTPase/ATPase; G protei 76.4 0.82 2.8E-05 46.7 1.5 21 332-352 53-73 (337)
345 2r44_A Uncharacterized protein 76.3 0.47 1.6E-05 47.2 -0.4 19 334-352 46-64 (331)
346 2oil_A CATX-8, RAS-related pro 76.1 0.82 2.8E-05 41.0 1.2 17 336-352 27-43 (193)
347 3kkq_A RAS-related protein M-R 76.1 0.85 2.9E-05 40.3 1.3 18 335-352 19-36 (183)
348 3crm_A TRNA delta(2)-isopenten 76.0 0.76 2.6E-05 47.3 1.1 18 335-352 6-23 (323)
349 3t1o_A Gliding protein MGLA; G 76.0 0.86 2.9E-05 40.4 1.3 17 336-352 16-32 (198)
350 4bas_A ADP-ribosylation factor 75.8 0.86 2.9E-05 40.8 1.3 18 335-352 18-35 (199)
351 3d3q_A TRNA delta(2)-isopenten 75.7 0.79 2.7E-05 47.6 1.1 18 335-352 8-25 (340)
352 1f6b_A SAR1; gtpases, N-termin 75.6 0.86 3E-05 41.7 1.3 18 335-352 26-43 (198)
353 2z4s_A Chromosomal replication 75.6 0.73 2.5E-05 48.7 0.9 19 334-352 130-148 (440)
354 3bwd_D RAC-like GTP-binding pr 75.6 0.9 3.1E-05 39.9 1.3 18 335-352 9-26 (182)
355 2i1q_A DNA repair and recombin 75.5 0.85 2.9E-05 45.5 1.3 21 332-352 96-116 (322)
356 3cbq_A GTP-binding protein REM 75.4 0.9 3.1E-05 41.6 1.3 17 336-352 25-41 (195)
357 2h57_A ADP-ribosylation factor 75.3 0.97 3.3E-05 40.5 1.5 19 334-352 21-39 (190)
358 2qnr_A Septin-2, protein NEDD5 75.3 0.87 3E-05 45.6 1.3 17 336-352 20-36 (301)
359 1z06_A RAS-related protein RAB 75.3 0.92 3.1E-05 40.7 1.3 18 335-352 21-38 (189)
360 3lxx_A GTPase IMAP family memb 75.3 0.9 3.1E-05 43.0 1.3 18 335-352 30-47 (239)
361 3euj_A Chromosome partition pr 75.2 0.9 3.1E-05 49.3 1.4 18 335-352 30-47 (483)
362 3tkl_A RAS-related protein RAB 75.1 0.94 3.2E-05 40.4 1.3 17 336-352 18-34 (196)
363 1m7b_A RND3/RHOE small GTP-bin 75.0 0.92 3.2E-05 40.6 1.3 17 336-352 9-25 (184)
364 4b4t_J 26S protease regulatory 75.0 0.75 2.6E-05 48.9 0.8 18 335-352 183-200 (405)
365 3l0i_B RAS-related protein RAB 75.0 1.2 4.2E-05 40.4 2.1 17 336-352 35-51 (199)
366 3dz8_A RAS-related protein RAB 74.9 0.93 3.2E-05 40.8 1.3 17 336-352 25-41 (191)
367 3clv_A RAB5 protein, putative; 74.7 0.97 3.3E-05 40.0 1.3 18 335-352 8-25 (208)
368 2hf9_A Probable hydrogenase ni 74.7 1 3.5E-05 41.7 1.5 18 335-352 39-56 (226)
369 2wsm_A Hydrogenase expression/ 74.6 1 3.5E-05 41.5 1.5 18 335-352 31-48 (221)
370 1tq4_A IIGP1, interferon-induc 74.3 1.1 3.7E-05 47.6 1.7 18 335-352 70-87 (413)
371 1iqp_A RFCS; clamp loader, ext 74.3 0.82 2.8E-05 44.4 0.8 17 336-352 48-64 (327)
372 3c5c_A RAS-like protein 12; GD 74.2 0.93 3.2E-05 40.9 1.1 18 335-352 22-39 (187)
373 1ypw_A Transitional endoplasmi 74.2 0.85 2.9E-05 52.1 1.0 21 332-352 236-256 (806)
374 1ksh_A ARF-like protein 2; sma 74.2 1 3.5E-05 40.0 1.3 19 334-352 18-36 (186)
375 2gf9_A RAS-related protein RAB 74.0 1 3.5E-05 40.3 1.3 17 336-352 24-40 (189)
376 2gf0_A GTP-binding protein DI- 73.9 1.2 4.3E-05 39.7 1.8 18 335-352 9-26 (199)
377 3kl4_A SRP54, signal recogniti 73.9 0.7 2.4E-05 49.4 0.2 20 333-352 96-115 (433)
378 1zj6_A ADP-ribosylation factor 73.9 1.1 3.8E-05 40.0 1.5 18 335-352 17-34 (187)
379 2chq_A Replication factor C sm 73.9 0.85 2.9E-05 44.1 0.8 16 337-352 41-56 (319)
380 2h17_A ADP-ribosylation factor 73.9 1 3.5E-05 40.1 1.3 18 335-352 22-39 (181)
381 1ls1_A Signal recognition part 73.8 0.84 2.9E-05 45.7 0.7 20 333-352 97-116 (295)
382 1m2o_B GTP-binding protein SAR 73.8 1.1 3.8E-05 40.6 1.5 20 333-352 22-41 (190)
383 2fh5_B SR-beta, signal recogni 73.7 1 3.6E-05 41.1 1.3 18 335-352 8-25 (214)
384 3ice_A Transcription terminati 73.7 0.94 3.2E-05 48.5 1.1 20 333-352 173-192 (422)
385 3llu_A RAS-related GTP-binding 73.7 1.1 3.8E-05 40.6 1.5 18 335-352 21-38 (196)
386 3llm_A ATP-dependent RNA helic 73.5 1.2 4E-05 42.4 1.6 20 332-351 74-93 (235)
387 3oes_A GTPase rhebl1; small GT 73.5 1.1 3.9E-05 40.6 1.5 18 335-352 25-42 (201)
388 2fg5_A RAB-22B, RAS-related pr 73.5 1.1 3.9E-05 40.3 1.5 17 336-352 25-41 (192)
389 1zbd_A Rabphilin-3A; G protein 73.3 1.1 3.7E-05 40.5 1.3 17 336-352 10-26 (203)
390 3foz_A TRNA delta(2)-isopenten 73.2 0.99 3.4E-05 46.6 1.1 19 334-352 10-28 (316)
391 1vg8_A RAS-related protein RAB 73.1 1.1 3.8E-05 40.4 1.3 18 335-352 9-26 (207)
392 2a5j_A RAS-related protein RAB 73.0 1.1 3.7E-05 40.3 1.2 17 336-352 23-39 (191)
393 2bcg_Y Protein YP2, GTP-bindin 73.0 1.2 4.1E-05 40.5 1.5 17 336-352 10-26 (206)
394 3reg_A RHO-like small GTPase; 72.9 1.1 3.9E-05 40.2 1.3 18 335-352 24-41 (194)
395 2il1_A RAB12; G-protein, GDP, 72.9 1.1 3.9E-05 40.4 1.3 17 336-352 28-44 (192)
396 2iwr_A Centaurin gamma 1; ANK 72.8 0.82 2.8E-05 40.2 0.4 17 336-352 9-25 (178)
397 2atv_A RERG, RAS-like estrogen 72.8 1.1 3.9E-05 40.4 1.3 18 335-352 29-46 (196)
398 2o52_A RAS-related protein RAB 72.8 1.2 4.2E-05 40.6 1.5 17 336-352 27-43 (200)
399 1x3s_A RAS-related protein RAB 72.7 1.2 4E-05 39.7 1.3 17 336-352 17-33 (195)
400 2yc2_C IFT27, small RAB-relate 72.7 0.91 3.1E-05 40.8 0.6 18 335-352 21-38 (208)
401 2ew1_A RAS-related protein RAB 72.6 1.2 4.2E-05 41.2 1.5 18 335-352 27-44 (201)
402 2dhr_A FTSH; AAA+ protein, hex 72.5 0.96 3.3E-05 49.1 0.9 16 337-352 67-82 (499)
403 1jr3_A DNA polymerase III subu 72.5 1.1 3.9E-05 44.5 1.3 18 335-352 39-56 (373)
404 2fv8_A H6, RHO-related GTP-bin 72.5 1.2 4.2E-05 40.7 1.5 17 336-352 27-43 (207)
405 4gzl_A RAS-related C3 botulinu 72.4 1.3 4.3E-05 40.7 1.5 19 334-352 30-48 (204)
406 2q3h_A RAS homolog gene family 72.4 1.1 3.7E-05 40.5 1.1 18 335-352 21-38 (201)
407 1bif_A 6-phosphofructo-2-kinas 72.2 1.1 3.7E-05 47.6 1.1 19 334-352 39-57 (469)
408 2vhj_A Ntpase P4, P4; non- hyd 72.1 1.1 3.6E-05 46.6 1.0 20 333-352 122-141 (331)
409 1sxj_B Activator 1 37 kDa subu 71.9 1 3.6E-05 43.6 0.9 16 337-352 45-60 (323)
410 3k53_A Ferrous iron transport 71.9 1.3 4.4E-05 43.1 1.5 17 336-352 5-21 (271)
411 4b4t_I 26S protease regulatory 71.8 1.1 3.8E-05 48.1 1.1 19 334-352 216-234 (437)
412 2ce7_A Cell division protein F 71.7 1 3.6E-05 48.5 0.9 18 335-352 50-67 (476)
413 1zd9_A ADP-ribosylation factor 71.6 1.3 4.3E-05 39.9 1.3 18 335-352 23-40 (188)
414 3cph_A RAS-related protein SEC 71.6 1.3 4.3E-05 40.2 1.3 19 334-352 20-38 (213)
415 2x77_A ADP-ribosylation factor 71.6 1.3 4.3E-05 39.7 1.3 19 334-352 22-40 (189)
416 3hu3_A Transitional endoplasmi 71.5 1.2 4E-05 48.1 1.2 19 334-352 238-256 (489)
417 3gj0_A GTP-binding nuclear pro 71.5 1.3 4.6E-05 40.8 1.5 17 336-352 17-33 (221)
418 2qu8_A Putative nucleolar GTP- 71.5 1.3 4.3E-05 41.5 1.3 19 334-352 29-47 (228)
419 4djt_A GTP-binding nuclear pro 71.5 1.3 4.3E-05 40.7 1.3 18 335-352 12-29 (218)
420 2atx_A Small GTP binding prote 71.4 1.4 4.7E-05 39.6 1.5 17 336-352 20-36 (194)
421 4b4t_H 26S protease regulatory 71.4 0.98 3.3E-05 48.9 0.6 19 334-352 243-261 (467)
422 2p5s_A RAS and EF-hand domain 71.3 1.3 4.3E-05 40.3 1.2 18 335-352 29-46 (199)
423 3io5_A Recombination and repai 71.2 1.2 4.1E-05 46.3 1.1 20 332-352 27-46 (333)
424 1w1w_A Structural maintenance 71.2 1.4 4.6E-05 46.1 1.6 20 333-352 25-44 (430)
425 1sxj_A Activator 1 95 kDa subu 71.2 1.2 4.1E-05 47.8 1.3 18 335-352 78-95 (516)
426 1ojl_A Transcriptional regulat 71.1 1.1 3.9E-05 44.7 1.0 19 334-352 25-43 (304)
427 2f7s_A C25KG, RAS-related prot 71.1 1.3 4.4E-05 40.6 1.2 17 336-352 27-43 (217)
428 2b6h_A ADP-ribosylation factor 71.0 1.4 4.8E-05 40.0 1.5 19 334-352 29-47 (192)
429 4aby_A DNA repair protein RECN 71.0 0.71 2.4E-05 47.3 -0.6 19 332-351 59-77 (415)
430 2j1l_A RHO-related GTP-binding 70.9 1.4 4.8E-05 40.7 1.5 17 336-352 36-52 (214)
431 1f2t_A RAD50 ABC-ATPase; DNA d 70.7 1.4 4.7E-05 39.6 1.3 17 335-351 24-40 (149)
432 4f4c_A Multidrug resistance pr 70.5 1.5 5.1E-05 52.8 1.9 21 332-352 442-462 (1321)
433 3eph_A TRNA isopentenyltransfe 70.4 1.3 4.5E-05 47.1 1.3 18 335-352 3-20 (409)
434 2j0v_A RAC-like GTP-binding pr 70.3 1.4 4.7E-05 40.2 1.3 18 335-352 10-27 (212)
435 1j8m_F SRP54, signal recogniti 70.2 1.3 4.4E-05 44.6 1.2 19 334-352 98-116 (297)
436 2gco_A H9, RHO-related GTP-bin 70.2 1.5 5.1E-05 39.9 1.5 17 336-352 27-43 (201)
437 2xtp_A GTPase IMAP family memb 70.1 1.5 5E-05 41.9 1.5 18 335-352 23-40 (260)
438 3bh0_A DNAB-like replicative h 70.0 1.5 5.2E-05 44.0 1.6 21 332-352 66-86 (315)
439 2iw3_A Elongation factor 3A; a 70.0 1.4 4.7E-05 51.9 1.4 21 332-352 459-479 (986)
440 3nbx_X ATPase RAVA; AAA+ ATPas 69.8 1.4 4.7E-05 47.8 1.3 19 334-352 41-59 (500)
441 1gwn_A RHO-related GTP-binding 69.7 1.6 5.3E-05 40.5 1.5 18 335-352 29-46 (205)
442 2gks_A Bifunctional SAT/APS ki 69.7 1.3 4.6E-05 48.3 1.2 21 332-352 370-390 (546)
443 2ffh_A Protein (FFH); SRP54, s 69.6 1.2 4.1E-05 47.4 0.8 44 303-352 73-116 (425)
444 3t5d_A Septin-7; GTP-binding p 69.5 1.5 5.3E-05 42.6 1.5 17 336-352 10-26 (274)
445 2qen_A Walker-type ATPase; unk 69.4 1.6 5.5E-05 42.5 1.6 18 335-352 32-49 (350)
446 3qf7_A RAD50; ABC-ATPase, ATPa 69.3 1.6 5.5E-05 45.0 1.6 19 332-351 22-40 (365)
447 2vf7_A UVRA2, excinuclease ABC 69.2 1.5 5.3E-05 50.6 1.6 21 332-352 521-541 (842)
448 2orw_A Thymidine kinase; TMTK, 69.0 1.7 5.7E-05 40.4 1.6 19 334-352 3-21 (184)
449 2hup_A RAS-related protein RAB 69.0 1.6 5.6E-05 39.8 1.5 17 336-352 31-47 (201)
450 3g5u_A MCG1178, multidrug resi 69.0 1.6 5.5E-05 52.4 1.8 21 332-352 414-434 (1284)
451 4dhe_A Probable GTP-binding pr 69.0 0.9 3.1E-05 41.7 -0.3 19 334-352 29-47 (223)
452 1u94_A RECA protein, recombina 68.9 1.5 5.2E-05 45.3 1.4 20 333-352 62-81 (356)
453 2h92_A Cytidylate kinase; ross 68.8 1.3 4.5E-05 41.0 0.8 18 335-352 4-21 (219)
454 2qag_C Septin-7; cell cycle, c 68.7 1.5 5.2E-05 46.5 1.3 17 336-352 33-49 (418)
455 2cjw_A GTP-binding protein GEM 68.7 1.5 5E-05 40.0 1.1 17 336-352 8-24 (192)
456 1e69_A Chromosome segregation 68.6 1.9 6.3E-05 43.3 1.9 18 333-351 24-41 (322)
457 3te6_A Regulatory protein SIR3 68.5 1.2 4.3E-05 45.5 0.6 21 332-352 43-63 (318)
458 3pxg_A Negative regulator of g 67.8 1.7 5.9E-05 46.1 1.6 17 336-352 203-219 (468)
459 3q3j_B RHO-related GTP-binding 67.6 1.6 5.4E-05 40.5 1.1 17 336-352 29-45 (214)
460 3th5_A RAS-related C3 botulinu 70.8 1.1 3.8E-05 40.7 0.0 19 334-352 30-48 (204)
461 3dm5_A SRP54, signal recogniti 67.4 1.4 4.9E-05 47.2 0.8 20 333-352 99-118 (443)
462 4hlc_A DTMP kinase, thymidylat 67.4 1.6 5.5E-05 41.4 1.1 18 335-352 3-20 (205)
463 3hjn_A DTMP kinase, thymidylat 67.3 1.5 5.2E-05 41.2 0.9 16 337-352 3-18 (197)
464 3lxw_A GTPase IMAP family memb 66.9 1.7 5.9E-05 41.8 1.2 18 335-352 22-39 (247)
465 2fna_A Conserved hypothetical 66.5 1.9 6.6E-05 42.0 1.5 18 335-352 31-48 (357)
466 2v3c_C SRP54, signal recogniti 66.5 1.5 5.1E-05 46.7 0.7 19 334-352 99-117 (432)
467 1tue_A Replication protein E1; 66.4 1.1 3.9E-05 43.7 -0.2 19 334-352 58-76 (212)
468 3g5u_A MCG1178, multidrug resi 66.0 2 6.7E-05 51.6 1.7 21 332-352 1057-1077(1284)
469 1g41_A Heat shock protein HSLU 65.8 1.6 5.6E-05 46.8 0.9 18 335-352 51-68 (444)
470 2www_A Methylmalonic aciduria 65.7 2 6.9E-05 43.9 1.5 21 332-352 72-92 (349)
471 3pih_A Uvrabc system protein A 65.6 2 6.7E-05 50.1 1.6 20 332-351 608-627 (916)
472 3cpj_B GTP-binding protein YPT 65.2 2 6.8E-05 39.9 1.2 17 336-352 15-31 (223)
473 2r6a_A DNAB helicase, replicat 65.2 2.1 7.2E-05 45.1 1.6 21 332-352 201-221 (454)
474 2ga8_A Hypothetical 39.9 kDa p 64.8 1.9 6.4E-05 45.2 1.1 17 336-352 26-42 (359)
475 1h65_A Chloroplast outer envel 64.6 2.2 7.6E-05 41.3 1.5 18 335-352 40-57 (270)
476 3qks_A DNA double-strand break 64.6 2.1 7.2E-05 40.2 1.3 17 335-351 24-40 (203)
477 3def_A T7I23.11 protein; chlor 64.6 2.2 7.6E-05 41.2 1.5 18 335-352 37-54 (262)
478 1wb9_A DNA mismatch repair pro 63.9 2.4 8.1E-05 48.7 1.8 21 332-352 605-625 (800)
479 2o5v_A DNA replication and rep 63.8 2.1 7.1E-05 44.5 1.2 20 332-352 25-44 (359)
480 2xxa_A Signal recognition part 63.8 1.8 6.1E-05 46.0 0.7 19 334-352 100-118 (433)
481 3iby_A Ferrous iron transport 63.7 2.4 8.4E-05 41.3 1.6 17 336-352 3-19 (256)
482 1xp8_A RECA protein, recombina 63.3 2.4 8.2E-05 44.1 1.6 20 333-352 73-92 (366)
483 2iw3_A Elongation factor 3A; a 63.3 1.4 4.9E-05 51.7 -0.2 21 332-352 697-717 (986)
484 3pxi_A Negative regulator of g 63.2 2 6.9E-05 48.1 1.0 17 336-352 523-539 (758)
485 3cf2_A TER ATPase, transitiona 63.0 2.2 7.4E-05 49.2 1.2 18 335-352 239-256 (806)
486 3i8s_A Ferrous iron transport 62.9 2.5 8.5E-05 41.5 1.5 17 336-352 5-21 (274)
487 1w5s_A Origin recognition comp 62.8 1.6 5.4E-05 43.9 0.1 19 334-352 50-70 (412)
488 2ygr_A Uvrabc system protein A 62.6 2.4 8.3E-05 49.8 1.6 21 332-352 666-686 (993)
489 3b1v_A Ferrous iron uptake tra 62.5 2.4 8.2E-05 41.9 1.3 18 335-352 4-21 (272)
490 1ni3_A YCHF GTPase, YCHF GTP-b 62.5 2.9 9.9E-05 44.0 2.0 21 332-352 18-38 (392)
491 2g3y_A GTP-binding protein GEM 62.0 2.3 8E-05 40.1 1.1 17 336-352 39-55 (211)
492 4ag6_A VIRB4 ATPase, type IV s 61.9 2.3 7.8E-05 43.6 1.1 19 334-352 35-53 (392)
493 2q6t_A DNAB replication FORK h 61.8 2.8 9.6E-05 44.1 1.8 21 332-352 198-218 (444)
494 3u61_B DNA polymerase accessor 61.6 2 6.9E-05 42.3 0.6 18 335-352 49-66 (324)
495 2b8t_A Thymidine kinase; deoxy 61.5 2.4 8.2E-05 41.2 1.1 21 332-352 10-30 (223)
496 3qkt_A DNA double-strand break 61.0 2.9 9.9E-05 42.3 1.6 19 333-351 22-40 (339)
497 1c9k_A COBU, adenosylcobinamid 60.7 2.5 8.7E-05 39.9 1.1 16 337-352 2-17 (180)
498 1qhl_A Protein (cell division 60.3 0.8 2.7E-05 44.6 -2.6 17 336-352 29-45 (227)
499 3pxi_A Negative regulator of g 60.3 2.9 9.8E-05 46.9 1.6 18 335-352 202-219 (758)
500 1ewq_A DNA mismatch repair pro 60.1 2.8 9.5E-05 47.9 1.4 19 334-352 576-594 (765)
No 1
>1ii2_A Phosphoenolpyruvate carboxykinase; phosphate binding loop, lyase; 2.00A {Trypanosoma cruzi} SCOP: c.91.1.1 c.109.1.1
Probab=100.00 E-value=1.7e-131 Score=1073.06 Aligned_cols=409 Identities=51% Similarity=0.843 Sum_probs=398.3
Q ss_pred ceeEecCCHHHHHHHHHhccCCeEEeccCceEEecCCcccCCCCCeeeecCCCccccccccC----cCccc---------
Q 008523 142 THVLYNLSPAELYEQAIKYEQGSFIASSGALATLSGAKTGRSPRDKRVVKDETTEHELWWGK----MKNHD--------- 208 (563)
Q Consensus 142 ~~v~~Nls~~eL~e~A~~~~~Gt~~t~~GaL~~~tG~~TGRSpkdk~IV~d~~~~~~i~wg~----~~e~~--------- 208 (563)
.+|+||++++||||+|+++++|+.++++|+|+++||++|||||+|||||+++.+++++||++ ++++.
T Consensus 2 ~~v~~n~~~~eL~e~A~~~~eg~~lt~~Gal~~~tg~~tgRsp~dk~iv~~~~~~~~i~w~~~n~~~~~e~f~~l~~~~~ 81 (524)
T 1ii2_A 2 PTIHRNLLSPELVQWALKIEKDSRLTARGALAVMSYAKTGRSPLDKRIVDTDDVRENVDWGKVNMKLSEESFARVRKIAK 81 (524)
T ss_dssp CEEEESCCHHHHHHHHHHHCTTCEECTTSCEEECCTTCSSBCGGGEEEECCHHHHTTSCBTTTBCEECHHHHHHHHHHHH
T ss_pred CeeEeCCCHHHHHHHHHHhCCCcEEcCCCCEEEecCcccCCCcCceEEeCCCCCccccccCcCcccCCHHHHHHHHHHHH
Confidence 57999999999999999999997799999999999999999999999999999999999987 44432
Q ss_pred -----cc-EEEEEeeecCCCCCeeEEEEEcccccHHHHHhccCcCCChHhhccCCCCCEEEEEcCCCCCCccccCCCCcc
Q 008523 209 -----VQ-VFVNDQFLNWDPQNRVKVRIVSARAYHSLFMHNMCIRPTPEELENFGTPDFTIYNAGQFPCNRYTHYMTSST 282 (563)
Q Consensus 209 -----~~-lyv~d~~~G~d~~~~i~vrvit~~a~~alf~~Nlf~rp~~~el~~~~~pd~tI~~~p~f~~~~~~~g~~s~~ 282 (563)
++ |||+|+++|+|++|+++||+|++++||+||++|||+||..+|+++|++|||+||++|+|.+++..+|++|++
T Consensus 82 ~~l~~k~~l~v~d~~~G~d~~~~~~vrvit~~a~~~lf~~nl~~rp~~~e~~~fg~pd~~i~~~p~f~~~~~~~G~~s~~ 161 (524)
T 1ii2_A 82 EFLDTREHLFVVDCFAGHDERYRLKVRVFTTRPYHALFMRDMLIVPTPEELATFGEPDYVIYNAGECKADPSIPGLTSTT 161 (524)
T ss_dssp HHHHTSSEEEEEEEEECSSTTTCEEEEEEESSHHHHHHHHHHSBCCCHHHHHTCCSCSEEEEEETTSCCCTTSTTCCSSC
T ss_pred HHHcCCCcEEEEeeeeecChhhcccEEEEECHHHHHHHHHHhhccCCHHHhcccCCCCEEEEeCCCccCCcccCCcCccc
Confidence 54 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCeEEEEccccchhhHHHHHHHHHHhcccCceeeecccceecCCCCEEEEEecCCCCcccccccCCCceeecC
Q 008523 283 SIDLNLARREMVILGTQYAGEMKKGLFSVMHYLMPKRQILSLHSGCNMGKDGDVALFFGLSGTGKTTLSTDHNRYLIGDD 362 (563)
Q Consensus 283 ~i~id~~~~~i~I~Gt~Y~GEiKK~iltl~n~~l~~~G~L~mH~sanvg~~G~valfFGLSGTGKTTLsad~~r~lIgDD 362 (563)
+|++|+++++++|+||+|+|||||++||+||++++++|+||||||+|++++|++++|||||||||||||+|++|.|||||
T Consensus 162 ~v~~~~~~~~~~I~Gt~Y~GemKK~~ftl~n~~~~~~g~L~~H~san~g~~g~~~~ffGlSGtGKTTLs~d~~r~lIgDD 241 (524)
T 1ii2_A 162 CVALNFKTREQVILGTEYAGEMKKGILTVMFELMPQMNHLCMHASANVGKQGDVTVFFGLSGTGKTTLSADPHRNLIGDD 241 (524)
T ss_dssp EEEEETTTTEEEEESCCCTHHHHHHHHHHHHHHHHHTTCEEESEEEEECTTCCEEEEECCTTSSHHHHHCCTTSEEEESS
T ss_pred EEEEECCCCeEEEECCcchHHHHHHHHHHHHHHHHHCCcEeecceeeeCCCCCEEEEEccCCcchhhhhhccCCeEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeecCCCccccCCceeEeecCCCCCCCchhhhhccccceeeeeEEcCCCCcccCCCCCcccceeEEEecccccCCcCCC
Q 008523 363 EHCWGDNGVSNIEGGCYAKCIDLSREKEPDIWNAIKFGAVLENVVFDEHTREVDYSDKSVTENTRAAYPIEYIPNAKIPC 442 (563)
Q Consensus 363 e~~w~~~Gvfn~EgGcyaK~~dLs~e~EP~I~~ai~f~ailENV~~d~~~~~vdf~d~s~t~NtR~~yPi~~i~N~~~~~ 442 (563)
||+|+++|+||+|+|||+||+||++|.||+||++++|++|+|||+||++++.|||+|+++|+|+|++||+++|+|++.++
T Consensus 242 e~~w~~~Gvfn~E~G~y~K~idl~~e~eP~I~~ai~~~~ilENV~~d~~g~~vd~~d~s~t~NtR~~~P~~~i~n~~~~~ 321 (524)
T 1ii2_A 242 EHVWTDRGVFNIEGGCYAKAIGLNPKTEKDIYDAVRFGAVAENCVLDKRTGEIDFYDESICKNTRVAYPLSHIEGALSKA 321 (524)
T ss_dssp CEEECSSCEEESCSEEEEECTTCCTTTCHHHHHTCSTTCEEESCCBCTTTCSBCTTCCSSCSCCEEEEEGGGSTTCCSSC
T ss_pred hhhccCCCccccccceEEEecCCCcccChhHHHhcCcCceEEEEEECCCCCcccCCCCcccCCceEEEEHHHCCCCCCcc
Confidence 99999999999999999999999999999999999999999999999998999999999999999999999999999998
Q ss_pred CCCCcceEEEEEeccCCCCCCeeecCHHHHHHHHHcccccccccccCC-ccCccccccccccCCCccCChHHHHHHHHHH
Q 008523 443 VGPHPKNVILLACDAFGVLPPVSKLNLAQTMYHFISGYTALVAGTEDG-IKEPTATFSACFGAAFIMLHPTKYAAMLAEK 521 (563)
Q Consensus 443 ~~g~P~~iIflt~Da~gvLPPVskLt~eQA~~~FlsGyTak~aGtE~G-v~ep~atFs~cFg~PF~p~~p~~yae~L~~k 521 (563)
+++||++||||+||+|||||||+|||++||||||+||||||+||||.| ++||+||||+|||+||+|+||.+||++|+++
T Consensus 322 ~~g~P~~Iifl~~Da~gvlPPVskLt~eqa~y~F~sG~Tak~agtE~G~~~ep~~~fs~~fg~PF~~~~~~~ya~~L~~~ 401 (524)
T 1ii2_A 322 IAGHPKNVIFLTNDAFGVMPPVARLTSAQAMFWFVMGYTANVPGVEAGGTRTARPIFSSCFGGPFLVRHATFYGEQLAEK 401 (524)
T ss_dssp EECCEEEEEEEECCTTSCSCSEEEECHHHHHHHHHHCEEEECSSSBTTCCSSCEEEECGGGCGGGCCSCHHHHHHHHHHH
T ss_pred cCCCCceEEEEEcCCcCCCCCcEecCHHHHHHHHhcCccccccccccCccccCceeeccccCCCccCCCHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred HHHcCCEEEEEeccccCCcccc-cccchHH
Q 008523 522 MQKHGATGWLVNTGWSGGRCVL-KMVNLYA 550 (563)
Q Consensus 522 l~~~~v~v~LiNTGw~gg~yg~-G~r~~~~ 550 (563)
|++++++||||||||+||+||+ |+||++.
T Consensus 402 i~~~~~~vylvNTg~~Gg~yg~~g~r~~~~ 431 (524)
T 1ii2_A 402 MQKHNSRVWLLNTGYAGGRADRGAKRMPLR 431 (524)
T ss_dssp HHHHTCEEEEEECSEESSCGGGTCEECCHH
T ss_pred HHHhCCeEEEEeCCccccccCccCccCCHH
Confidence 9999999999999999999999 9999983
No 2
>2olr_A Phosphoenolpyruvate carboxykinase; carbon dioxide, lyase; HET: ATP; 1.60A {Escherichia coli K12} SCOP: c.91.1.1 c.109.1.1 PDB: 1k3c_A* 1k3d_A* 1aq2_A* 2olq_A* 1os1_A* 2pxz_X* 1ayl_A* 2py7_X* 1oen_A 1ylh_A* 1ygg_A*
Probab=100.00 E-value=1.7e-128 Score=1048.41 Aligned_cols=410 Identities=50% Similarity=0.828 Sum_probs=393.6
Q ss_pred ccchhccCccc-ceeEecCCHHHHHHHHHhcc-----CCeEEeccCceEEecCCcccCCCCCeeeecCCCccccccccC-
Q 008523 131 TISVSDSSLKF-THVLYNLSPAELYEQAIKYE-----QGSFIASSGALATLSGAKTGRSPRDKRVVKDETTEHELWWGK- 203 (563)
Q Consensus 131 ~~~l~~~g~~~-~~v~~Nls~~eL~e~A~~~~-----~Gt~~t~~GaL~~~tG~~TGRSpkdk~IV~d~~~~~~i~wg~- 203 (563)
...|..+||.. .+|+||+++++|+|+|++++ +|. ++++|+|+++||++|||||+|||||+++.+++.+|||+
T Consensus 9 ~~~~~~~gi~~~~~v~~n~~~~~L~e~al~~~~~~~eeg~-l~~~Gal~~~tg~~tgRsp~dk~Iv~~~~~~~~i~w~~~ 87 (540)
T 2olr_A 9 PQELEAYGISDVHDIVYNPSYDLLYQEELDPSLTGYERGV-LTNLGAVAVDTGIFTGRSPKDKYIVRDDTTRDTFWWADK 87 (540)
T ss_dssp HHHHHHTTCCCCCCEEESCCHHHHHHHHHCTTCCGGGCEE-ECTTSCEEECCCSCSSCCGGGEEEECSTTTTTTSCCTTS
T ss_pred ccchhhcCCCCCCeEEeCCCHHHHHHHHHhcCCCccccce-ecCCCCEEEcCCCcccCCCCceEEeCCCCCccccccccc
Confidence 34688999985 79999999999999999988 775 99999999999999999999999999999999999976
Q ss_pred ---------cCccc--------------ccEEEEEeeecCCCCCeeEEEEEcccccHHHHHhccCcCCChHhhccCCCCC
Q 008523 204 ---------MKNHD--------------VQVFVNDQFLNWDPQNRVKVRIVSARAYHSLFMHNMCIRPTPEELENFGTPD 260 (563)
Q Consensus 204 ---------~~e~~--------------~~lyv~d~~~G~d~~~~i~vrvit~~a~~alf~~Nlf~rp~~~el~~~~~pd 260 (563)
++++. ++|||+|+++|+|++|+++||+|++++||+||++|||+||..+|+++| +||
T Consensus 88 ~~~~~~N~~~~~e~f~~l~~~~~~~l~~k~lyv~d~~~G~d~~~~~~vr~ite~a~~alf~~nLf~rp~~ee~~~~-~pd 166 (540)
T 2olr_A 88 GKGKNDNKPLSPETWQHLKGLVTRQLSGKRLFVVDAFCGANPDTRLSVRFITEVAWQAHFVKNMFIRPSDEELAGF-KPD 166 (540)
T ss_dssp SSSCCSCEEECHHHHHHHHHHHHHHHTTSCEEEEEEEESSSTTTCEEEEEEESCHHHHHHHHHHSBCCCHHHHHTC-CCS
T ss_pred cccccccCCCCHHHHHHHHHHHHHHHcCCCEEEEeeeeeCChhhceeEEEEeCHHHHHHHHHHhhcCCChHHhcCC-CCC
Confidence 44432 689999999999999999999999999999999999999999999999 999
Q ss_pred EEEEEc-----CCCCCCccccCCCCccEEEEecCCCeEEEEccccchhhHHHHHHHHHHhcccCceeeecccceecCCCC
Q 008523 261 FTIYNA-----GQFPCNRYTHYMTSSTSIDLNLARREMVILGTQYAGEMKKGLFSVMHYLMPKRQILSLHSGCNMGKDGD 335 (563)
Q Consensus 261 ~tI~~~-----p~f~~~~~~~g~~s~~~i~id~~~~~i~I~Gt~Y~GEiKK~iltl~n~~l~~~G~L~mH~sanvg~~G~ 335 (563)
|+||++ |+|.++ |++|+++|++|+++++++|+||+|+|||||++||+||++++++|+||||||+|++++|+
T Consensus 167 ~~i~~~~~~~~p~f~~~----G~~s~~~v~~~~~~~~~~I~Gt~Y~GemKK~~ftl~n~~l~~~G~L~mH~sanvg~~g~ 242 (540)
T 2olr_A 167 FIVMNGAKCTNPQWKEQ----GLNSENFVAFNLTERMQLIGGTWYGGEMKKGMFSMMNYLLPLKGIASMHCSANVGEKGD 242 (540)
T ss_dssp EEEEEETTCCCTTTTTT----TCSSSCEEEEETTTTEEEEESCCCTHHHHHHHHHHHHHHTGGGTCEEECEEEEECTTSC
T ss_pred EEEEEeccCCCCCcccC----CccCccEEEEEccCCeEEEeCCcCchHhhhhHHHHhHHHHHHCCcEeecceeeeCCCCC
Confidence 999999 999877 89999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCCCcccccccCCCceeecCceeecCCCccccCCceeEeecCCCCCCCchhhhhccccceeeeeEEcCCCCcc
Q 008523 336 VALFFGLSGTGKTTLSTDHNRYLIGDDEHCWGDNGVSNIEGGCYAKCIDLSREKEPDIWNAIKFGAVLENVVFDEHTREV 415 (563)
Q Consensus 336 valfFGLSGTGKTTLsad~~r~lIgDDe~~w~~~Gvfn~EgGcyaK~~dLs~e~EP~I~~ai~f~ailENV~~d~~~~~v 415 (563)
+++|||||||||||||+|++|.|||||||+|+++||||+|+|||+|||||++|.||+||+|++|++|+|||++|++++.
T Consensus 243 ~~lffGlSGtGKTTLs~d~~r~lIgDDe~~w~~~Gvfn~EgGcyak~i~Ls~e~EP~i~~ai~~~aileNV~~d~~g~~- 321 (540)
T 2olr_A 243 VAVFFGLSGTGKTTLSTDPKRRLIGDDEHGWDDDGVFNFEGGCYAKTIKLSKEAEPEIYNAIRRDALLENVTVREDGTI- 321 (540)
T ss_dssp EEEEECSTTSSHHHHHCCTTSEEEESSCEEEETTEEEESCSEEEEECTTCCTTTSHHHHHTCSTTCEEESCEECTTSCE-
T ss_pred EEEEEccCCCCHHHHhcCcCCcEEecCceeecCCCcccccCceEEEeccCCcccChhHHHhcCccceeeeeeEcCCCCe-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred cCCCCCcccceeEEEecccccCCcCC-CCCCCcceEEEEEeccCCCCCCeeecCHHHHHHHHHcccccccccccCCccCc
Q 008523 416 DYSDKSVTENTRAAYPIEYIPNAKIP-CVGPHPKNVILLACDAFGVLPPVSKLNLAQTMYHFISGYTALVAGTEDGIKEP 494 (563)
Q Consensus 416 df~d~s~t~NtR~~yPi~~i~N~~~~-~~~g~P~~iIflt~Da~gvLPPVskLt~eQA~~~FlsGyTak~aGtE~Gv~ep 494 (563)
||+|+++|+|+|++||+++|+|+..+ ++++||++||||+||+||+||||+|||++||||||+||||||+||||+||+||
T Consensus 322 df~d~s~t~NtR~~yPi~~i~n~~~~~~~~g~P~~IifLt~Da~gvlPPVskLt~eqA~y~FlsG~tak~aGtE~Gv~ep 401 (540)
T 2olr_A 322 DFDDGSKTENTRVSYPIYHIDNIVKPVSKAGHATKVIFLTADAFGVLPPVSRLTADQTQYHFLSGFTAKLAGTERGITEP 401 (540)
T ss_dssp ETTCCSSCSCCEEEEEGGGSSSBCCSSSEESCEEEEEEEECCTTSCSCSEEECCHHHHHHHHHHCEEEEETTGGGTCCCE
T ss_pred ecCCCCccccceEEEEHHHCCCcCCccccCCCCCEEEEEecCCcCCCCCceeCCHHHHHHHHHhcchhhhhccccCcccc
Confidence 99999999999999999999999877 78899999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCCCccCChHHHHHHHHHHHHHcCCEEEEEeccccCCcccccccchHHh
Q 008523 495 TATFSACFGAAFIMLHPTKYAAMLAEKMQKHGATGWLVNTGWSGGRCVLKMVNLYAD 551 (563)
Q Consensus 495 ~atFs~cFg~PF~p~~p~~yae~L~~kl~~~~v~v~LiNTGw~gg~yg~G~r~~~~~ 551 (563)
+||||+||++||+|+||.+||++|+++|++++++||||||||+|| |+||++..
T Consensus 402 ~~tfs~cFa~PF~p~~p~~ya~~l~~~~~~~~v~vylvNTGw~Gg----gkri~~~~ 454 (540)
T 2olr_A 402 TPTFSACFGAAFLSLHPTQYAEVLVKRMQAAGAQAYLVNTGWNGT----GKRISIKD 454 (540)
T ss_dssp EEEECGGGCGGGCSSCHHHHHHHHHHHHHHHTCEEEEEECSBCTT----SSBCCHHH
T ss_pred CCcccccccCcccCCCHHHHHHHHHHHHHhcCCeEEEEeCCCcCC----CccCCHHH
Confidence 999999999999999999999999999999999999999999997 99999854
No 3
>1ytm_A Phosphoenolpyruvate carboxykinase [ATP], phosphoenolpyruvate; domain closure, nucleotide binding; HET: ATP; 2.20A {Anaerobiospirillum succiniciproducens} PDB: 1yvy_A
Probab=100.00 E-value=6.1e-128 Score=1046.14 Aligned_cols=412 Identities=48% Similarity=0.789 Sum_probs=396.7
Q ss_pred ccchhccCccc-ceeEecCCHHHHHHHHHh---cc--CCeEEeccCceEEecCCcccCCCCCeeeecCCCccccccc---
Q 008523 131 TISVSDSSLKF-THVLYNLSPAELYEQAIK---YE--QGSFIASSGALATLSGAKTGRSPRDKRVVKDETTEHELWW--- 201 (563)
Q Consensus 131 ~~~l~~~g~~~-~~v~~Nls~~eL~e~A~~---~~--~Gt~~t~~GaL~~~tG~~TGRSpkdk~IV~d~~~~~~i~w--- 201 (563)
...|..+||.. .+|+||++++||+|+|++ ++ +|. ++++|+|+++||++|||||+|||||+++.+++ +||
T Consensus 4 ~~~~~~~g~~~~~~i~~n~~~~~L~e~a~~~~~~~~~eg~-l~~~Gal~~~tg~~tgRsp~dk~iv~~~~~~~-i~w~~~ 81 (532)
T 1ytm_A 4 SESLAKYGITGATNIVHNPSHEELFAAETQASLEGFEKGT-VTEMGAVNVMTGVYTGRSPKDKFIVKNEASKE-IWWTSD 81 (532)
T ss_dssp HHHHHHHTCCCCSEEEESCCHHHHHHHHTCTTCCGGGCEE-ECTTSSEEECCTTCCSBCGGGEEEECSGGGTT-SCCCCS
T ss_pred ccchHhcCCCCCCeEEECCCHHHHHHHHHhhccCCcccce-ecCCCCEEEcCCCcccCCCCceEEeCCCCccc-cccccc
Confidence 45688999985 799999999999999998 77 785 99999999999999999999999999999999 999
Q ss_pred --cC----cCccc--------------ccEEEEEeeecCCCCCeeEEEEEcccccHHHHHhccCcCCChHhhccCCCCCE
Q 008523 202 --GK----MKNHD--------------VQVFVNDQFLNWDPQNRVKVRIVSARAYHSLFMHNMCIRPTPEELENFGTPDF 261 (563)
Q Consensus 202 --g~----~~e~~--------------~~lyv~d~~~G~d~~~~i~vrvit~~a~~alf~~Nlf~rp~~~el~~~~~pd~ 261 (563)
++ ++++. ++|||+|+++|+|++|+++||+|++++||+||++|||+||..+|+++| +|||
T Consensus 82 ~~~~~n~~~~~e~f~~l~~~~~~~l~~k~l~v~d~~~G~d~~~~~~vr~it~~a~~~lf~~nLf~rp~~ee~~~f-~pd~ 160 (532)
T 1ytm_A 82 EFKNDNKPVTEEAWAQLKALAGKELSNKPLYVVDLFCGANENTRLKIRFVMEVAWQAHFVTNMFIRPTEEELKGF-EPDF 160 (532)
T ss_dssp SSCCSCEEECHHHHHHHHHHHHHHHSSSEEEEEEEEESSCTTTCEEEEEEESCHHHHHHHHHHSBCCCHHHHTTC-CCSE
T ss_pred ccCcccCCCCHHHHHHHHHHHHHHHcCCCEEEEEEEeeCChhhceeEEEEeCHHHHHHHHHHhccCCChHHhccC-CCCE
Confidence 65 33332 689999999999999999999999999999999999999999999999 9999
Q ss_pred EEEEcCC-CCCCccccCCCCccEEEEecCCCeEEEEccccchhhHHHHHHHHHHhcccCceeeecccceecCCC-CEEEE
Q 008523 262 TIYNAGQ-FPCNRYTHYMTSSTSIDLNLARREMVILGTQYAGEMKKGLFSVMHYLMPKRQILSLHSGCNMGKDG-DVALF 339 (563)
Q Consensus 262 tI~~~p~-f~~~~~~~g~~s~~~i~id~~~~~i~I~Gt~Y~GEiKK~iltl~n~~l~~~G~L~mH~sanvg~~G-~valf 339 (563)
+||++|+ |.+++..+|++|+++|++|+++++++|+||+|+|||||++||+||++++++|+||||||||++++| ++++|
T Consensus 161 ~i~~~p~~f~~~~~~~G~~s~~~v~~n~~~~~~~I~gt~Y~GemKK~~ftl~n~~~~~~G~L~~H~sanv~~~g~~~~~f 240 (532)
T 1ytm_A 161 VVLNASKAKVENFKELGLNSETAVVFNLAEKMQIILNTWYGGEMKKGMFSMMNFYLPLQGIAAMHCSANTDLEGKNTAIF 240 (532)
T ss_dssp EEEEETTCCCTTTTTTTCSSSCEEEEETTTTEEEEESCCCTTHHHHHHHHHHHHHTGGGTCEEEEEEEEEETTSCSEEEE
T ss_pred EEEECCccccCCcccCCCCCceEEEEECCCCEEEEeCCccCchhhHhHHHHHHHHHHHCCcEeecCeeeeCCCCCeEEEE
Confidence 9999999 999999999999999999999999999999999999999999999999999999999999999888 99999
Q ss_pred EecCCCCcccccccCCCceeecCceeecCCCccccCCceeEeecCCCCCCCchhhhhccccceeeeeEEcCCCCcccCCC
Q 008523 340 FGLSGTGKTTLSTDHNRYLIGDDEHCWGDNGVSNIEGGCYAKCIDLSREKEPDIWNAIKFGAVLENVVFDEHTREVDYSD 419 (563)
Q Consensus 340 FGLSGTGKTTLsad~~r~lIgDDe~~w~~~Gvfn~EgGcyaK~~dLs~e~EP~I~~ai~f~ailENV~~d~~~~~vdf~d 419 (563)
||||||||||||+|++|.|||||||+|+++||||+|+|||+|||||+++.||+||++++|++|+|||++|+++ +|||+|
T Consensus 241 fGlSGtGKTTLs~d~~r~lIgDDe~~w~~~Gvfn~EgGcyak~i~Ls~~~EP~i~~ai~~~ailENV~~d~~g-~vd~~d 319 (532)
T 1ytm_A 241 FGLSGTGKTTLSTDPKRLLIGDDEHGWDDDGVFNFEGGCYAKVINLSKENEPDIWGAIKRNALLENVTVDANG-KVDFAD 319 (532)
T ss_dssp ECCTTSSHHHHHCCTTEEEEESSEEEECSSCEEESCSEEEEECTTCCTTTCHHHHHHCSTTCEEESCEECTTC-CEETTC
T ss_pred EecCCCCHHHHhhCcCCCEEECCeeeeccCCceeccceEEEEeccCCCccChhHHHhcCcCceeeeeEECCCC-ccccCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999987 999999
Q ss_pred CCcccceeEEEecccccCCc-CCCCCCCcceEEEEEeccCCCCCCeeecCHHHHHHHHHcccccccccccCCccCccccc
Q 008523 420 KSVTENTRAAYPIEYIPNAK-IPCVGPHPKNVILLACDAFGVLPPVSKLNLAQTMYHFISGYTALVAGTEDGIKEPTATF 498 (563)
Q Consensus 420 ~s~t~NtR~~yPi~~i~N~~-~~~~~g~P~~iIflt~Da~gvLPPVskLt~eQA~~~FlsGyTak~aGtE~Gv~ep~atF 498 (563)
+++|+|+|++||+++|+|++ .++++++|++||||+||+|||||||+|||++||||||++|||||+||||.|++||+|||
T Consensus 320 ~s~t~NtR~~~P~~~i~n~~~~~~~~g~P~~IifL~~DafgvlPPvsklt~~qa~y~FlsG~tak~aGtE~Gv~ep~~tf 399 (532)
T 1ytm_A 320 KSVTENTRVSYPIFHIKNIVKPVSKAPAAKRVIFLSADAFGVLPPVSILSKEQTKYYFLSGFTAKLAGTERGITEPTPTF 399 (532)
T ss_dssp CSSCSCCEEEEEGGGSSSBCCSSSEESCEEEEEEEECCTTSCSCSEEECCHHHHHHHHHHCEEEECTTSBTTCCSCEEEE
T ss_pred CcccccceEEEEHHHCCCcccCCCcCCCCceEEEEecCCCCCCCCceecCHHHHHHHHHcCCcccccccccCccccCCcc
Confidence 99999999999999999998 78888999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCccCChHHHHHHHHHHHHHcCCEEEEEeccccCCcccccccchHH
Q 008523 499 SACFGAAFIMLHPTKYAAMLAEKMQKHGATGWLVNTGWSGGRCVLKMVNLYA 550 (563)
Q Consensus 499 s~cFg~PF~p~~p~~yae~L~~kl~~~~v~v~LiNTGw~gg~yg~G~r~~~~ 550 (563)
|+||++||+|+||.+||++|+++|++++++||||||||+ |+|+||++.
T Consensus 400 s~cF~~PF~~~~~~~ya~~L~~~i~~~~~~vylvNTg~~----G~g~r~~~~ 447 (532)
T 1ytm_A 400 SSCFGAAFLTLPPTKYAEVLVKRMEASGAKAYLVNTGWN----GTGKRISIK 447 (532)
T ss_dssp CGGGCGGGCCSCHHHHHHHHHHHHHHHTCEEEEEECSBC----TTSSBCCHH
T ss_pred cccccCCccCCCHHHHHHHHHHHHHhcCCeEEEEeCCcc----ccCccCCHH
Confidence 999999999999999999999999999999999999999 689999983
No 4
>1j3b_A ATP-dependent phosphoenolpyruvate carboxykinase; adenosine triphosphate, T thermophilus; 2.00A {Thermus thermophilus} SCOP: c.91.1.1 c.109.1.1 PDB: 1xkv_A* 2pc9_A*
Probab=100.00 E-value=2.2e-121 Score=994.20 Aligned_cols=416 Identities=46% Similarity=0.797 Sum_probs=388.4
Q ss_pred cchhccCccc-ceeEecCCHHHHHHHHHhccCCeEEeccCceEEecCCcccCCCCCeeeecCCCccccccccC----cCc
Q 008523 132 ISVSDSSLKF-THVLYNLSPAELYEQAIKYEQGSFIASSGALATLSGAKTGRSPRDKRVVKDETTEHELWWGK----MKN 206 (563)
Q Consensus 132 ~~l~~~g~~~-~~v~~Nls~~eL~e~A~~~~~Gt~~t~~GaL~~~tG~~TGRSpkdk~IV~d~~~~~~i~wg~----~~e 206 (563)
+.|..+||.. .+|+||++.+||+|+|+++++|. ++++|+|++.||++|||||+|||||+++.+++.+|||+ +++
T Consensus 2 ~~~~~~~l~~~~~v~~n~~~~~l~e~a~~~g~g~-~~~~g~~~~~tg~~tgRsp~~~fIv~~~~~~~~~~w~~~n~~~~~ 80 (529)
T 1j3b_A 2 QRLEALGIHPKKRVFWNTVSPVLVEHTLLRGEGL-LAHHGPLVVDTTPYTGRSPKDKFVVREPEVEGEIWWGEVNQPFAP 80 (529)
T ss_dssp CCCGGGTCCCSSCEEESCCHHHHHHHHHHTTSCE-ECTTSCEEECCTTCCSCCGGGEEEECCTTTTTTSCBTTTBEEECH
T ss_pred cchhhccCCCCCeEEECCChHHHHHHHHHcCCCE-ECCCCCEEeCCCCcccCCCCceEEeCCCCcCCccccccccCcCCH
Confidence 4578889985 79999999999999999999995 88999999999999999999999999999999999987 233
Q ss_pred cc--------------ccEEEEEeeecCCCCCeeEEEEEcccccHHHHHhccCcCCC----hHhhccCCCCCEEEEEcCC
Q 008523 207 HD--------------VQVFVNDQFLNWDPQNRVKVRIVSARAYHSLFMHNMCIRPT----PEELENFGTPDFTIYNAGQ 268 (563)
Q Consensus 207 ~~--------------~~lyv~d~~~G~d~~~~i~vrvit~~a~~alf~~Nlf~rp~----~~el~~~~~pd~tI~~~p~ 268 (563)
+. ++|||+|+++|+++++++++|+||+++||+||++|||+||. .+|++.| +|||+||++|+
T Consensus 81 e~f~~l~~~~~~~m~gr~lyV~~~~~G~~~~~~~~~~~itd~a~~~lf~~~m~~rp~~~~~~~el~~~-~pd~~i~~~p~ 159 (529)
T 1j3b_A 81 EAFEALYQRVVQYLSERDLYVQDLYAGADRRYRLAVRVVTESPWHALFARNMFILPRRFGNDDEVEAF-VPGFTVVHAPY 159 (529)
T ss_dssp HHHHHHHHHHHHHHHTSCEEEEEEEECSSTTTCEEEEEEESCHHHHHHHHHHSBCGGGGC------CC-CCSEEEEEETT
T ss_pred HHHHHHHHHHHHHhcCCcEEEEEEeeeCCcccCeeEEEEcChHHHHHHHHHHhcccCcccchhhhccC-CCCEEEEeCCC
Confidence 21 78999999999999999999999999999999999999988 7889999 99999999999
Q ss_pred CCCCccccCCCCccEEEEecCCCeEEEEccccchhhHHHHHHHHHHhcccCceeeecccceecCCCCEEEEEecCCCCcc
Q 008523 269 FPCNRYTHYMTSSTSIDLNLARREMVILGTQYAGEMKKGLFSVMHYLMPKRQILSLHSGCNMGKDGDVALFFGLSGTGKT 348 (563)
Q Consensus 269 f~~~~~~~g~~s~~~i~id~~~~~i~I~Gt~Y~GEiKK~iltl~n~~l~~~G~L~mH~sanvg~~G~valfFGLSGTGKT 348 (563)
|.+++..+|++++++|++|+++++++|+|++|+|||||++||+||++++++|||+||||+|++++|++++||||||||||
T Consensus 160 f~~~~~~~G~~s~~~i~~~~~~~~i~i~Gt~Y~Ge~KK~~l~i~~~~~~~~G~L~~H~sa~~~~~g~~~~ffGlSGtGKT 239 (529)
T 1j3b_A 160 FQAVPERDGTRSEVFVGISFQRRLVLIVGTKYAGEIKKSIFTVMNYLMPKRGVFPMHASANVGKEGDVAVFFGLSGTGKT 239 (529)
T ss_dssp CCCCHHHHCCSSSCEEEEETTTTEEEEESCCCTHHHHHHHHHHHHHHGGGGTCEEEECEEEECTTCCEEEEEECTTSCHH
T ss_pred cccCcccCCCCCceEEEEECccCEEEEeCCccCcchHHHHHHHHHHHHHHCCeEeccceeeeCCCCcEEEEEccccCChh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCceeecCceeecCCCccccCCceeEeecCCCCCCCchhhhhc-cccceeeeeEEcCCCCcccCCCCCccccee
Q 008523 349 TLSTDHNRYLIGDDEHCWGDNGVSNIEGGCYAKCIDLSREKEPDIWNAI-KFGAVLENVVFDEHTREVDYSDKSVTENTR 427 (563)
Q Consensus 349 TLsad~~r~lIgDDe~~w~~~Gvfn~EgGcyaK~~dLs~e~EP~I~~ai-~f~ailENV~~d~~~~~vdf~d~s~t~NtR 427 (563)
|||++|+|.+||||||+|+++|+||+|+|||+||+||+++.||+||+++ +|++|+|||++|++++.|+|+|.++|+|+|
T Consensus 240 tLs~~p~r~lIgDD~~~w~~~Gv~n~E~G~y~k~~~ls~~~eP~i~~ai~~~~~ileNV~~d~dg~~v~~~~~~~t~N~R 319 (529)
T 1j3b_A 240 TLSTDPERPLIGDDEHGWSEDGVFNFEGGCYAKVIRLSPEHEPLIYKASNQFEAILENVVVNPESRRVQWDDDSKTENTR 319 (529)
T ss_dssp HHTCBTTBCEEESSEEEECSSCEEESCSEEEEECTTCCTTTCHHHHHHHSSTTCEEESCEECTTTCCEETTCCSSCSCCE
T ss_pred hHhhccCcceEECchhhhccCceecccCceEEEecCCCCcchHHHHHHhCcCCceeEEeEECCCCCcccCCCCCCCCCcc
Confidence 9999999999999999999999999999999999999999999999999 999999999999988899999999999999
Q ss_pred EEEecccccCCcCCCCCCCcceEEEEEeccCCCCCCeeecCHHHHHHHHHcccccccccccCCccCccccccccccCCCc
Q 008523 428 AAYPIEYIPNAKIPCVGPHPKNVILLACDAFGVLPPVSKLNLAQTMYHFISGYTALVAGTEDGIKEPTATFSACFGAAFI 507 (563)
Q Consensus 428 ~~yPi~~i~N~~~~~~~g~P~~iIflt~Da~gvLPPVskLt~eQA~~~FlsGyTak~aGtE~Gv~ep~atFs~cFg~PF~ 507 (563)
++||+++++|+..++.+++|++||||+||+||+||||++||++||||||+||||||++|||+|++||+||||+||++||+
T Consensus 320 ~~~P~~~~pn~~~~~~~g~P~~Iifl~~da~gvlPpV~~l~~~qa~~~f~sG~Tak~agtE~Gv~ep~ptFs~~f~~PF~ 399 (529)
T 1j3b_A 320 SSYPIAHLENVVESGVAGHPRAIFFLSADAYGVLPPIARLSPEEAMYYFLSGYTARVAGTERGVTEPRATFSACFGAPFL 399 (529)
T ss_dssp EEEEGGGCSSBCTTSEECCEEEEEEEECCTTSCSCSEEEECHHHHHHHHHHCEEEEC---------CEEEECGGGCGGGC
T ss_pred EEEEHHHCCCCCCCCcCCCCCEEEEEEccCCCCCCCeecCCHHHHHHHHHccccccccccccCccccCCcccccccCCcc
Confidence 99999999999888888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHHHcCCEEEEEeccccCCcccccccchH
Q 008523 508 MLHPTKYAAMLAEKMQKHGATGWLVNTGWSGGRCVLKMVNLY 549 (563)
Q Consensus 508 p~~p~~yae~L~~kl~~~~v~v~LiNTGw~gg~yg~G~r~~~ 549 (563)
++||.+||++|+++|++++++||||||||+||+||+|+||++
T Consensus 400 ~~~~~~ya~~L~~~~~~~~~~v~lVNTgw~gg~yg~g~r~~~ 441 (529)
T 1j3b_A 400 PMHPGVYARMLGEKIRKHAPRVYLVNTGWTGGPYGVGYRFPL 441 (529)
T ss_dssp SSCHHHHHHHHHHHHHHHCCEEEEEECSEESSSTTTSEECCH
T ss_pred CCCHHHHHHHHHHhhhhcCCeEEEEcCCcccCccCCCccCCH
Confidence 999999999999999999999999999999999999999998
No 5
>2zci_A Phosphoenolpyruvate carboxykinase [GTP], phosphoenolpyruvate; GTP-dependent, signaling protein, lyase; 2.30A {Corynebacterium glutamicum}
Probab=99.95 E-value=1.5e-26 Score=251.01 Aligned_cols=387 Identities=16% Similarity=0.185 Sum_probs=267.7
Q ss_pred ccceeEecC-CHHH---HHHHHHhccCCeEEec-----cCceEEecC-CcccCCCCCeeeecCCCccc--cccccC---c
Q 008523 140 KFTHVLYNL-SPAE---LYEQAIKYEQGSFIAS-----SGALATLSG-AKTGRSPRDKRVVKDETTEH--ELWWGK---M 204 (563)
Q Consensus 140 ~~~~v~~Nl-s~~e---L~e~A~~~~~Gt~~t~-----~GaL~~~tG-~~TGRSpkdk~IV~d~~~~~--~i~wg~---~ 204 (563)
.+.+|++.- |.+| |.++++.. |+.+-- .+...+.|. .=++|.-...||+-+...+. ...|-. |
T Consensus 32 ~Pd~I~icdGS~eE~~~l~~~~v~~--G~~~~L~~~k~~n~~l~~sdp~DvARve~rTfI~t~~~~dagptnnw~~p~e~ 109 (610)
T 2zci_A 32 QPEAVVFVDGSQAEWDRMAEDLVEA--GTLIKLNEEKRPNSYLARSNPSDVARVESRTFICSEKEEDAGPTNNWAPPQAM 109 (610)
T ss_dssp CCSEEEECCCCHHHHHHHHHHHHHT--TSEEECCTTTSTTCEEECCCGGGSSCCGGGEEECCSSTTTTCTTSCCCCHHHH
T ss_pred CCCEEEEcCCCHHHHHHHHHHHHhC--CCeeecCCCCCCceeecCCChhhcceeccceEEecCchhhcCCCcCccCHHHH
Confidence 367898855 4544 55566543 542211 233444444 33566666678876443322 223533 2
Q ss_pred Ccc----------cccEEEEEeeecC-CCCCeeEEEEEcccccHHHHHhccCcCCChHhhccCC-CCCEE--EEEcCCCC
Q 008523 205 KNH----------DVQVFVNDQFLNW-DPQNRVKVRIVSARAYHSLFMHNMCIRPTPEELENFG-TPDFT--IYNAGQFP 270 (563)
Q Consensus 205 ~e~----------~~~lyv~d~~~G~-d~~~~i~vrvit~~a~~alf~~Nlf~rp~~~el~~~~-~pd~t--I~~~p~f~ 270 (563)
..+ -|.|||+....|- ...+......||+++|..+.|+=|. |--.+.++..+ ..+|+ |++...-.
T Consensus 110 ~~~l~~~f~G~M~GRTMYViPfsMGP~gsp~s~~GVeiTDS~YVv~smrIMt-R~g~~v~~~lg~~~~Fv~~vHSvG~pl 188 (610)
T 2zci_A 110 KDEMSKHYAGSMKGRTMYVVPFCMGPISDPDPKLGVQLTDSEYVVMSMRIMT-RMGIEALDKIGANGSFVRCLHSVGAPL 188 (610)
T ss_dssp HHHHHHHHTTTTTTSEEEEEEEEESCTTCSSCEEEEEEESCHHHHHHHHHHS-EESHHHHHHHTTTCCCEEEEEECSCCC
T ss_pred HHHHHHhCCcccCCCEEEEEeeecCCCCCCcccceeEeeCCHHHHHHHHHHH-hcCHHHHHHhCCCCCeeeeecccCCcC
Confidence 111 1899998877776 7889999999999999999888664 43444443333 24664 55544211
Q ss_pred CC-----ccccCCCCccEEEEecCCCeEEEEccccchh---hHH-HHHHHHHHhcccCceeeecccc-ee-cCCCCEEEE
Q 008523 271 CN-----RYTHYMTSSTSIDLNLARREMVILGTQYAGE---MKK-GLFSVMHYLMPKRQILSLHSGC-NM-GKDGDVALF 339 (563)
Q Consensus 271 ~~-----~~~~g~~s~~~i~id~~~~~i~I~Gt~Y~GE---iKK-~iltl~n~~l~~~G~L~mH~sa-nv-g~~G~valf 339 (563)
.. +|+. +.+..|+.+++.+.|+..|+.|.|+ -|| -.|+++.+++.++|||+.|+-. .+ +++|++..|
T Consensus 189 ~~~~~dv~wPc--~~~~~I~h~pe~r~I~S~GSgYGGNaLLGKKcfALRiAs~~ar~EGWLAEHMlIlgvt~P~g~~~yv 266 (610)
T 2zci_A 189 EPGQEDVAWPC--NDTKYITQFPETKEIWSYGSGYGGNAILAKKCYALRIASVMAREEGWMAEHMLILKLINPEGKAYHI 266 (610)
T ss_dssp CSSCCCCSSCC--CSSCEEEEETTTTEEEEESCCSHHHHCTCCCCCTTHHHHHHHHHHTCEEECCEEEEEECSSSCEEEE
T ss_pred CCCCcCCCCCC--CCceEEEEecCcCeEEEecCCcCcchhhhhHHHHHHHHHHHhhhcChHHHHHHHheecCCCCcEEEE
Confidence 11 1221 2468999999999999999999999 455 4689999999999999999953 22 467876444
Q ss_pred E--ecCCCCcccccc-cC---CC--ceeecCce-e-ecCCCcc--ccCCceeEeecCCCCCCCchhhhhc-cccceeeee
Q 008523 340 F--GLSGTGKTTLST-DH---NR--YLIGDDEH-C-WGDNGVS--NIEGGCYAKCIDLSREKEPDIWNAI-KFGAVLENV 406 (563)
Q Consensus 340 F--GLSGTGKTTLsa-d~---~r--~lIgDDe~-~-w~~~Gvf--n~EgGcyaK~~dLs~e~EP~I~~ai-~f~ailENV 406 (563)
. ++|+||||+|++ .| +- .+||||.. + +..||.+ |.|.|+|.++.+++.+..|.+++++ +-.+|++||
T Consensus 267 aaAfPSacGKTnlAMl~p~~~gwkve~vGDDIawm~~~~dGl~AiNPE~GfFGvapGt~~~tnP~am~~~~~~n~IFtNV 346 (610)
T 2zci_A 267 AAAFPSACGKTNLAMITPTIPGWTAQVVGDDIAWLKLREDGLYAVNPENGFFGVAPGTNYASNPIAMKTMEPGNTLFTNV 346 (610)
T ss_dssp EEECSSSHHHHHHHTCCCSSTTCEEEEEESSCEEEEECSSSEEEECCCSEEEEECTTCCTTTCHHHHHHHTTCCCEEESC
T ss_pred EEecccccchhhHhhcCCCCCCceeEEeecceeeEeeCCCceeEecCCCceeEecCCCCCCcCHHHHHHhccCCceEeee
Confidence 4 599999999998 32 32 38999943 3 4478855 7899999999999999999999999 789999999
Q ss_pred EEcCCCCcccCCCCCc-----------------------ccceeEEEecccccCCc--CCCCCCCcceE-EEEEeccCCC
Q 008523 407 VFDEHTREVDYSDKSV-----------------------TENTRAAYPIEYIPNAK--IPCVGPHPKNV-ILLACDAFGV 460 (563)
Q Consensus 407 ~~d~~~~~vdf~d~s~-----------------------t~NtR~~yPi~~i~N~~--~~~~~g~P~~i-Iflt~Da~gv 460 (563)
.++++| .|.|++... +.|+|++.|++..|++. .++..|+|++. ||-+++ ...
T Consensus 347 a~t~dG-~v~WeG~~~~~p~~~~dw~G~~w~~~~~~paaHpNsRft~p~~qcp~i~~~we~p~GVpIsaiiFggRR-~~~ 424 (610)
T 2zci_A 347 ALTDDG-DIWWEGMDGDAPAHLIDWMGNDWTPESDENAAHPNSRYCVAIDQSPAAAPEFNDWEGVKIDAILFGGRR-ADT 424 (610)
T ss_dssp EEETTS-CEECTTCSSCCCSCEECTTSCEECTTCSSCSSCTTCEEEEEGGGCTTBCGGGGCTTCEECSEEEEECCC-SSS
T ss_pred EEcCCC-cccCCCCCCCCCCcccccCCCccCCCCCCcCcCCccceEeEHhhCCccCccccCCCCceEEEEEEcccC-CCC
Confidence 999874 777765543 49999999999999985 44666889555 455565 478
Q ss_pred CCCeeec-CHHHHHHHHHcccccccc--cc-cCCccCccccccccccCCCccCChHHHHHH---HHHHHHHcCCEEEEEe
Q 008523 461 LPPVSKL-NLAQTMYHFISGYTALVA--GT-EDGIKEPTATFSACFGAAFIMLHPTKYAAM---LAEKMQKHGATGWLVN 533 (563)
Q Consensus 461 LPPVskL-t~eQA~~~FlsGyTak~a--Gt-E~Gv~ep~atFs~cFg~PF~p~~p~~yae~---L~~kl~~~~v~v~LiN 533 (563)
+|+|.+. +.+.+++ .|.+-.+. -. ..| +.-+-.|-|+.-.||+..+..+|-+- +.+++...--++|.||
T Consensus 425 vPlV~ea~~W~hGV~---~Gasm~Se~taa~a~g-~~~~vr~DPfAmlpF~gyn~gdY~~HWL~~g~~~~~k~PkIF~VN 500 (610)
T 2zci_A 425 VPLVTQTYDWEHGTM---VGALLASGQTAASAEA-KVGTLRHDPMAMLPFIGYNAGEYLQNWIDMGNKGGDKMPSIFLVN 500 (610)
T ss_dssp SCSEEECSSHHHHHH---HHHTCBCCC---------CCCCCBCGGGCTTTCCSCHHHHHHHHHHHHHHHGGGSCEEEEEC
T ss_pred CCcEEEccCchhhhh---hhchhcccccchhhcC-CCceEeeCcccccccCcCCHHHHHHHHhhhcccCCCCCCcEEEEe
Confidence 8999998 5777776 67773221 11 234 22234467788899999999999887 3345433446899999
Q ss_pred cccc
Q 008523 534 TGWS 537 (563)
Q Consensus 534 TGw~ 537 (563)
--..
T Consensus 501 wFrk 504 (610)
T 2zci_A 501 WFRR 504 (610)
T ss_dssp TTCB
T ss_pred eeeE
Confidence 6655
No 6
>2faf_A Phosphoenolpyruvate carboxykinase; pepck, phosphoryl transfer, lyase; HET: 20S EPE 1PE; 1.70A {Gallus gallus} PDB: 2fah_A* 2qzy_A*
Probab=99.95 E-value=4.1e-26 Score=247.10 Aligned_cols=398 Identities=18% Similarity=0.187 Sum_probs=271.4
Q ss_pred ccceeEecC-CHHH---HHHHHHhccCCeEEec---cCceEEecC-CcccCCCCCeeeecCCCccc--cc----------
Q 008523 140 KFTHVLYNL-SPAE---LYEQAIKYEQGSFIAS---SGALATLSG-AKTGRSPRDKRVVKDETTEH--EL---------- 199 (563)
Q Consensus 140 ~~~~v~~Nl-s~~e---L~e~A~~~~~Gt~~t~---~GaL~~~tG-~~TGRSpkdk~IV~d~~~~~--~i---------- 199 (563)
.+.+|++.- |.+| |.++++.. |+.+-- .+...+.|. .=++|.-...||+-+...+. ..
T Consensus 24 ~Pd~I~icdGS~eE~~~l~~~~v~~--G~~~~L~k~~n~~l~~sdp~DvARve~rTfI~t~~~~dagp~n~~~g~~~~~~ 101 (608)
T 2faf_A 24 RPREVLLCDGSEEEGKELLRGLQDD--GVLHPLPKYDNCWLARTDPRDVARVESKTVLVTPEQSDAVPPPPPSGGPPQLG 101 (608)
T ss_dssp CCSEEEECCCCHHHHHHHHHHHHHT--TSEEECTTSBSCEEECCCTTCSSCCGGGEEEECSSGGGTSCCCCTTCCCCCSC
T ss_pred CCCEEEEcCCCHHHHHHHHHHHHhC--CCeeecCCCCCceeccCChhhcceeccceEEecCchhhcCCCCcccccccccc
Confidence 367888755 4544 55566543 542210 122333333 33555555668876543322 11
Q ss_pred cccC---cCcc----------cccEEEEEeeecC-CCCCeeEEEEEcccccHHHHHhccCcCCChHhhccCCCCCEE--E
Q 008523 200 WWGK---MKNH----------DVQVFVNDQFLNW-DPQNRVKVRIVSARAYHSLFMHNMCIRPTPEELENFGTPDFT--I 263 (563)
Q Consensus 200 ~wg~---~~e~----------~~~lyv~d~~~G~-d~~~~i~vrvit~~a~~alf~~Nlf~rp~~~el~~~~~pd~t--I 263 (563)
.|-. |..+ -|.|||+....|- ...+......||+++|..+.|+=|. |--.+.++..++ +|+ |
T Consensus 102 nw~~p~e~~~~l~~~f~G~M~GRTMYViPFsMGP~gsp~s~~GVeiTDS~YVv~smriMt-R~g~~v~~~lg~-~Fv~~v 179 (608)
T 2faf_A 102 NWMSPNAFQAAVQERFPGCMAGRPLYVIPFSMGPPTSPLAKLGVQVTDSPYVVLSMRIMT-RVGPAVLQRLDD-DFVRCL 179 (608)
T ss_dssp CEECHHHHHHHHHHHSTTTTTTSEEEEEEEEESCTTCTTCEEEEEEESCHHHHHHHHHHS-EESHHHHTTCCS-CCEEEE
T ss_pred ccCCHHHHHHHHHHhCCcccCCCEEEEEeeecCCCCCCcccceeEeeCCHHHHHHHHHHH-hcCHHHHHHhhC-ccceee
Confidence 3522 2111 1899998887776 7889999999999999999988664 445667766666 775 5
Q ss_pred EEcCC-----------CCCCccccCCCCccEEEEecCCCeEEEEccccchh---hHH-HHHHHHHHhcccCceeeecccc
Q 008523 264 YNAGQ-----------FPCNRYTHYMTSSTSIDLNLARREMVILGTQYAGE---MKK-GLFSVMHYLMPKRQILSLHSGC 328 (563)
Q Consensus 264 ~~~p~-----------f~~~~~~~g~~s~~~i~id~~~~~i~I~Gt~Y~GE---iKK-~iltl~n~~l~~~G~L~mH~sa 328 (563)
++... |+||+ .++.|+.+++.+.|+..|+.|.|+ -|| -.|+++.+++.++|||+.|+-.
T Consensus 180 HSvG~pl~~~~~~~~~WPcn~------~~~~I~h~pe~r~I~S~GSgYGGNaLLGKKcfALRiAs~~ar~EGWLAEHMlI 253 (608)
T 2faf_A 180 HSVGRPLPLTEPLVSSWPCDP------SRVLVAHIPSERRIVSFGSGYGGNSLLGKKCFALRIASRMAQQQGWLAEHMLI 253 (608)
T ss_dssp EECSCCSSCSSCCSTTCCCCG------GGCEEEEEGGGTEEEEESCCSHHHHCTCCCCCTTHHHHHHHHHHTCEEESCEE
T ss_pred cccCCcCCcccccCCCCccCC------CccEEEEECCCCeEEEecCCcCcchhhhhHHHHHHHHHHHhhhcChHHHHHHH
Confidence 54432 33332 248899999999999999999999 455 4689999999999999999953
Q ss_pred -ee-cCCCCEEEEE--ecCCCCcccccc-cC---CC--ceeecCce-e-ecCCCcc---ccCCceeEeecCCCCCCCchh
Q 008523 329 -NM-GKDGDVALFF--GLSGTGKTTLST-DH---NR--YLIGDDEH-C-WGDNGVS---NIEGGCYAKCIDLSREKEPDI 393 (563)
Q Consensus 329 -nv-g~~G~valfF--GLSGTGKTTLsa-d~---~r--~lIgDDe~-~-w~~~Gvf---n~EgGcyaK~~dLs~e~EP~I 393 (563)
.+ +++|++..|. ++|+||||+|++ .| +- ..||||.. + ++.||.. |.|.|+|.++.+.+.+..|.+
T Consensus 254 lgvt~p~g~~~yiaaAfPSacGKTnlAMl~p~~~gwkve~vGDDIawm~~~~dG~l~AiNPE~GfFGvapGt~~~tnP~a 333 (608)
T 2faf_A 254 LGVTSPSGEKRYMAAAFPSACGKTNLAMMTPSLPGWRIHCVGDDIAWMKFDDEGRLRAINPERGFFGVAPGTSSRTNPNA 333 (608)
T ss_dssp EEEECTTSCEEEEEEECSSCTTSCCGGGCCCSSTTCEEEEEESSCEEEEECTTSBEEEECCCSEEEEECTTCCTTTCHHH
T ss_pred heecCCCCcEEEEEEecccccchhhHhhcCCCCCCceeEEeecceeeeEECCCCcEEEecCCCCeeEecCCCCCCcCHHH
Confidence 22 4678764444 599999999998 32 32 38999943 3 4478843 899999999999999999999
Q ss_pred hhhccccceeeeeEEcCCCCcccCCCCCc-------------------------ccceeEEEecccccCCc--CCCCCCC
Q 008523 394 WNAIKFGAVLENVVFDEHTREVDYSDKSV-------------------------TENTRAAYPIEYIPNAK--IPCVGPH 446 (563)
Q Consensus 394 ~~ai~f~ailENV~~d~~~~~vdf~d~s~-------------------------t~NtR~~yPi~~i~N~~--~~~~~g~ 446 (563)
+++++-.+|++||.++++| .|.|++... +.|+|++.|+...|++. .++..|+
T Consensus 334 m~tl~~n~IFTNVa~t~dG-~v~WeG~~~~~~p~~~~~dw~G~~w~~~~g~paaHpNsRft~p~~qcp~id~~we~p~GV 412 (608)
T 2faf_A 334 MATIARNTIFTNVGLRSDG-GVYWDGLDEPTEPGVTYTSWLGKPWKHGDPEPCAHPNSRFCAPADQCPIMDPRWDDPEGV 412 (608)
T ss_dssp HHHTSBSCEEESCEEETTS-CEECTTCCCCCCTTCCEECTTSSEECTTCSSCSSCTTCEEEEEGGGCTTBCTTTTCTTCE
T ss_pred HHHhccCceeeeeEEcCCC-ceecCCCCCCCCCCccccccCCCccCCCCCCcCcCCccceEeEHhhCCccCccccCCCCc
Confidence 9999889999999998874 777765542 38999999999999985 4466688
Q ss_pred cceE-EEEEeccCCCCCCeeec-CHHHHHHHHHccccccc--ccccCCccCccccccccccCCCccCChHHHHHHHHH--
Q 008523 447 PKNV-ILLACDAFGVLPPVSKL-NLAQTMYHFISGYTALV--AGTEDGIKEPTATFSACFGAAFIMLHPTKYAAMLAE-- 520 (563)
Q Consensus 447 P~~i-Iflt~Da~gvLPPVskL-t~eQA~~~FlsGyTak~--aGtE~Gv~ep~atFs~cFg~PF~p~~p~~yae~L~~-- 520 (563)
|++. ||-+++ ...+|+|.+. +.+.+++ .|.+-.+ +-...| +.-+-.|-|+.-.||+..+..+|-+--.+
T Consensus 413 pIsaiiFggRR-~~~vPlV~ea~~W~hGV~---~Gasm~Se~Taaa~g-~~~~vr~DPfAmlpF~gyn~gdY~~HWL~~g 487 (608)
T 2faf_A 413 PIDAIIFGGRR-PRGVPLVVEAFGWRHGVF---MGSAMRSEATAAAEH-KGGRLMHDPFAMRPFFGYNAGRYLEHWLSTG 487 (608)
T ss_dssp EEEEEEEEECC-SSSSCSEEECSSHHHHHH---HHHTCBC-------------CCBCGGGCGGGCSSCHHHHHHHHHHHT
T ss_pred eEEEEEEcccC-CCCCCcEEEccCchhhhh---hhchhccccchhhcC-CCCcEeeCcccccccccCCHHHHHHHHhhhc
Confidence 8555 555566 4788999998 5777776 6777322 222234 22233466788899999999999887332
Q ss_pred -HHHHcCCEEEEEeccccC--Ccc---cccccch-HHhHh
Q 008523 521 -KMQKHGATGWLVNTGWSG--GRC---VLKMVNL-YADIL 553 (563)
Q Consensus 521 -kl~~~~v~v~LiNTGw~g--g~y---g~G~r~~-~~~~l 553 (563)
++...--++|.||--..+ |.| |.|..+- +.|++
T Consensus 488 ~~~~~k~PkIF~VNwFrk~~~GkflwPGfgeN~RvL~Wi~ 527 (608)
T 2faf_A 488 LRSNARLPRLFHVNWFLRDNEGRFVWPGFGHNARVLAWIF 527 (608)
T ss_dssp TSTTCBCCEEEEEESCCBCTTSSBSSCCGGGHHHHHHHHH
T ss_pred cccCCCCCcEEEEeeeeECCCCCCCCCCCccchhHHHHHH
Confidence 221233679999966553 322 4455544 44544
No 7
>3moe_A Phosphoenolpyruvate carboxykinase, cytosolic [GTP; gluconeogenesis, lyase; HET: GTP SPV 1PE; 1.25A {Rattus norvegicus} PDB: 3mof_A* 3moh_A* 3dtb_A* 2qey_A* 2qf1_A* 2qew_A* 2rk7_A 2rk8_A 2rka_A* 2rkd_A 2rke_A 2qf2_A* 3dt2_A* 3dt7_A* 3dt4_A* 1khb_A* 1khe_A* 1khf_A* 1khg_A 1m51_A* ...
Probab=99.93 E-value=1.4e-24 Score=235.37 Aligned_cols=401 Identities=17% Similarity=0.174 Sum_probs=275.5
Q ss_pred ccceeEecC-CH---HHHHHHHHhccCCeEEec-cCceEEecCC-cccCCCCCeeeecCCCccc----------cccccC
Q 008523 140 KFTHVLYNL-SP---AELYEQAIKYEQGSFIAS-SGALATLSGA-KTGRSPRDKRVVKDETTEH----------ELWWGK 203 (563)
Q Consensus 140 ~~~~v~~Nl-s~---~eL~e~A~~~~~Gt~~t~-~GaL~~~tG~-~TGRSpkdk~IV~d~~~~~----------~i~wg~ 203 (563)
.+.+|++.- |. +.|.++++..++-..+.+ -+..++.|.. =+.|--...||+-....+. ...|-.
T Consensus 41 ~Pd~I~icdGS~eE~~~l~~~~ve~G~~~~L~k~pn~~l~~sdP~DvARve~rTfI~t~~~~da~p~~~~g~~~~nnwm~ 120 (624)
T 3moe_A 41 QPEYIHICDGSEEEYGRLLAHMQEEGVIRKLKKYDNCWLALTDPRDVARIESKTVIITQEQRDTVPIPKSGQSQLGRWMS 120 (624)
T ss_dssp CCSEEEECCCCHHHHHHHHHHHHHTTSCEECTTSBSCEEECCCTTCCSCCGGGEEEECSSHHHHSCCCSSSCCSSCCEEC
T ss_pred CCCEEEEeCCCHHHHHHHHHHHHHcCCcccccCCCCCEEEeCChhhccccccceEEecCchhhcCCcccCCcCcccccCC
Confidence 367898855 44 456666665432221210 1233333332 3444444457775433331 234532
Q ss_pred ---c----Ccc------cccEEEEEeeecC-CCCCeeEEEEEcccccHHHHHhccCcCCChHhhccCCCCCEE--EEEcC
Q 008523 204 ---M----KNH------DVQVFVNDQFLNW-DPQNRVKVRIVSARAYHSLFMHNMCIRPTPEELENFGTPDFT--IYNAG 267 (563)
Q Consensus 204 ---~----~e~------~~~lyv~d~~~G~-d~~~~i~vrvit~~a~~alf~~Nlf~rp~~~el~~~~~pd~t--I~~~p 267 (563)
+ .+. -|.|||+....|- ...+......||+++|..+.|+=|. |--.+.++..++.+|+ |++..
T Consensus 121 p~e~~~~l~~~f~G~M~GRTMYViPFsMGP~GSp~s~~GVeiTDS~YVv~smrIMt-R~g~~vld~lg~~~Fv~clHSvG 199 (624)
T 3moe_A 121 EEDFEKAFNARFPGCMKGRTMYVIPFSMGPLGSPLAKIGIELTDSPYVVASMRIMT-RMGTSVLEALGDGEFIKCLHSVG 199 (624)
T ss_dssp HHHHHHHHHTTSTTTTTTSEEEEEEEEESCSSCTTCEEEEEEESCHHHHHHHHHHS-EESHHHHHHHTTCCCEEEEEECS
T ss_pred HHHHHHHHHhhCcccccCCeEEEEeeecCCCCCCccceeEEccCcHHHHHhHHHHh-hCCHHHHHhhcCCCeeeeecccC
Confidence 1 111 1899998877776 7778888999999999999988664 4344455443444674 55542
Q ss_pred C-----------CCCCccccCCCCccEEEEecCCCeEEEEccccchh---hHHH-HHHHHHHhcccCceeeecccc-ee-
Q 008523 268 Q-----------FPCNRYTHYMTSSTSIDLNLARREMVILGTQYAGE---MKKG-LFSVMHYLMPKRQILSLHSGC-NM- 330 (563)
Q Consensus 268 ~-----------f~~~~~~~g~~s~~~i~id~~~~~i~I~Gt~Y~GE---iKK~-iltl~n~~l~~~G~L~mH~sa-nv- 330 (563)
. |+|++ .++.|+.+++.+.|+..|+.|.|+ -||. .|+++.+++.++|||+.|+-. .+
T Consensus 200 ~pl~~~~~~v~~Wpcnp------~k~~I~h~pe~r~I~S~GSgYGGNaLLGKKcfALRiAS~~Ar~EGWLAEHMlIlgit 273 (624)
T 3moe_A 200 CPLPLKKPLVNNWACNP------ELTLIAHLPDRREIISFGSGYGGNSLLGKKCFALRIASRLAKEEGWLAEHMLILGIT 273 (624)
T ss_dssp CCSSCSSCCBTTBCCCG------GGCEEEEEGGGTEEEEESCCSHHHHCTCCCCCTTHHHHHHHHHHTCEEESCEEEEEE
T ss_pred CCCCCCCccCCCCCCCC------CceEEEEecccCeEEEecCCcCcchhhhHHHHHHHHHHHHhhhcccHHHhHHHheec
Confidence 2 23322 246899999999999999999999 6877 999999999999999999963 22
Q ss_pred cCCCCEEEEEe--cCCCCcccccc-cC---CC--ceeecC-ceee-cCCCc---cccCCceeEeecCCCCCCCchhhhhc
Q 008523 331 GKDGDVALFFG--LSGTGKTTLST-DH---NR--YLIGDD-EHCW-GDNGV---SNIEGGCYAKCIDLSREKEPDIWNAI 397 (563)
Q Consensus 331 g~~G~valfFG--LSGTGKTTLsa-d~---~r--~lIgDD-e~~w-~~~Gv---fn~EgGcyaK~~dLs~e~EP~I~~ai 397 (563)
+++|++..|.| +|+||||+|++ .| +- ..|||| +-+| ++||. .|.|.|+|..+.+.+.+..|.+++++
T Consensus 274 ~P~G~~~yiaaAFPSaCGKTnlAMl~p~~~Gwkve~vGDDIAwm~~~~dG~l~AiNPE~GfFGvapGt~~~tnp~am~~l 353 (624)
T 3moe_A 274 NPEGKKKYLAAAFPSACGKTNLAMMNPTLPGWKVECVGDDIAWMKFDAQGNLRAINPENGFFGVAPGTSVKTNPNAIKTI 353 (624)
T ss_dssp CTTSCEEEEEEECCTTSSHHHHHTCCCSSTTCEEEEEESSCEEEEECTTSBEEEECCCSEEEEECTTCSTTTCHHHHHHT
T ss_pred CCCCcEEEEEEEcccccccccHhhcCCCCCCceeEEecccEEEEEECCCccEEeecCCCCeeeecCCCCCccCHHHHHhh
Confidence 47888866655 99999999998 33 33 479999 4444 67995 39999999999999999999999999
Q ss_pred cccceeeeeEEcCCCCcc----------------cCCCC---------CcccceeEEEecccccCCc--CCCCCCCcceE
Q 008523 398 KFGAVLENVVFDEHTREV----------------DYSDK---------SVTENTRAAYPIEYIPNAK--IPCVGPHPKNV 450 (563)
Q Consensus 398 ~f~ailENV~~d~~~~~v----------------df~d~---------s~t~NtR~~yPi~~i~N~~--~~~~~g~P~~i 450 (563)
+-.+|+.||.+++++ .| ||.+. ..++|+|.+.|+...|++. -+...|+|++.
T Consensus 354 ~~n~IFTNVa~t~dG-~v~WeG~~~~~p~~~~~~dw~G~~w~~~~~~p~aHPNsRft~p~~qcp~~~p~we~p~GVpIsa 432 (624)
T 3moe_A 354 QKNTIFTNVAETSDG-GVYWEGIDEPLAPGVTITSWKNKEWRPQDEEPCAHPNSRFCTPASQCPIIDPAWESPEGVPIEG 432 (624)
T ss_dssp TBSCEEESCEEETTS-CEECTTCCCCCCTTCCEECTTSSEECTTSSSCSSCTTCEEEEEGGGCTTBCTTTTCTTCEEEEE
T ss_pred cCCceEeeeEECCCC-CeecCCCCCCCCCCcceeeCCCCCCCCCCCCcCCCCcccccccHhhCCCCCccccCCCCceEEE
Confidence 889999999998863 32 23222 2579999999999999985 34667999777
Q ss_pred EEEE-eccCCCCCCeeec-CHHHHHHHHHcccc--cccccccCCccCccccccccccCCCccCChHHHHHHHHH---HHH
Q 008523 451 ILLA-CDAFGVLPPVSKL-NLAQTMYHFISGYT--ALVAGTEDGIKEPTATFSACFGAAFIMLHPTKYAAMLAE---KMQ 523 (563)
Q Consensus 451 Iflt-~Da~gvLPPVskL-t~eQA~~~FlsGyT--ak~aGtE~Gv~ep~atFs~cFg~PF~p~~p~~yae~L~~---kl~ 523 (563)
|++. +|+ ..+|+|.+- +.+..++ .|.+ +..|..+.|. .-+-.+-|+.-.||+..+..+|-+--.+ +..
T Consensus 433 iiFGGRr~-~~vPlV~ea~~W~hGV~---~gA~m~SE~TAAa~~~-~g~vr~DPmAMlPF~gYn~gdY~~HWL~~g~~~~ 507 (624)
T 3moe_A 433 IIFGGRRP-AGVPLVYEALSWQHGVF---VGAAMRSEATAGAEHK-GKVIMHDPFAMRPFFGYNFGKYLAHWLSMAHRPA 507 (624)
T ss_dssp EEEECCCS-SSCCSEEECSSHHHHHH---HHHTCEEECC-------CCCEEECGGGCTTTCSSCHHHHHHHHHHGGGSTT
T ss_pred EEEcccCC-CCCCcEEEecCcchhhh---hhhhhhhhHhHHhhcC-CCcEEECccccCCCCcCCHHHHHHHHHHhcccCC
Confidence 7766 664 688999975 8999988 4766 3222222221 1122255778889999999999876443 222
Q ss_pred HcCCEEEEEe---ccccCC----cccccccchHHhHhc
Q 008523 524 KHGATGWLVN---TGWSGG----RCVLKMVNLYADILG 554 (563)
Q Consensus 524 ~~~v~v~LiN---TGw~gg----~yg~G~r~~~~~~l~ 554 (563)
..--++|-|| .+--|. .||...|+ +.|++.
T Consensus 508 ~k~PkIF~VNwFrkd~~GkFLWPGfgeN~RV-L~Wi~~ 544 (624)
T 3moe_A 508 AKLPKIFHVNWFRKDKNGKFLWPGFGENSRV-LEWMFG 544 (624)
T ss_dssp CBCCEEEEECSCCBCTTSCBSSCCGGGGHHH-HHHHHH
T ss_pred CCCCcEEEEeeeEECCCCCCcCCCCcchhHH-HHHHHH
Confidence 2447889888 321121 57888998 888765
No 8
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=97.66 E-value=1.7e-05 Score=75.97 Aligned_cols=49 Identities=27% Similarity=0.249 Sum_probs=39.9
Q ss_pred eeeecccceecCCCCEEEEEecCCCCcccccc---cCCCceeecCcee-ecCCC
Q 008523 321 ILSLHSGCNMGKDGDVALFFGLSGTGKTTLST---DHNRYLIGDDEHC-WGDNG 370 (563)
Q Consensus 321 ~L~mH~sanvg~~G~valfFGLSGTGKTTLsa---d~~r~lIgDDe~~-w~~~G 370 (563)
-+.+||++ +..+|..++|.|.||+|||||+. ..+..||+||... +..++
T Consensus 4 ~~~lHas~-v~v~G~gvli~G~SGaGKStlal~L~~rG~~lvaDD~v~i~~~~~ 56 (181)
T 3tqf_A 4 KQTWHANF-LVIDKMGVLITGEANIGKSELSLALIDRGHQLVCDDVIDLKQENN 56 (181)
T ss_dssp CEEEESEE-EEETTEEEEEEESSSSSHHHHHHHHHHTTCEEEESSEEEEEESSS
T ss_pred cEEEEEEE-EEECCEEEEEEcCCCCCHHHHHHHHHHcCCeEecCCEEEEEEeCC
Confidence 36899998 77889999999999999999876 5577899999654 33443
No 9
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=97.43 E-value=4.7e-05 Score=78.46 Aligned_cols=47 Identities=26% Similarity=0.328 Sum_probs=39.4
Q ss_pred ceeeecccceecCCCCEEEEEecCCCCcccccc---cCCCceeecCceeec
Q 008523 320 QILSLHSGCNMGKDGDVALFFGLSGTGKTTLST---DHNRYLIGDDEHCWG 367 (563)
Q Consensus 320 G~L~mH~sanvg~~G~valfFGLSGTGKTTLsa---d~~r~lIgDDe~~w~ 367 (563)
..+.+||++ +..+|..++|.|.||+|||||+. ..+..||+||.....
T Consensus 134 ~~~~~H~~~-v~~~g~gvli~G~sG~GKStlal~l~~~G~~lv~DD~v~i~ 183 (312)
T 1knx_A 134 TVAQIHGVL-LEVFGVGVLLTGRSGIGKSECALDLINKNHLFVGDDAIEIY 183 (312)
T ss_dssp CCEEEEEEE-EEETTEEEEEEESSSSSHHHHHHHHHTTTCEEEEEEEEEEE
T ss_pred hcceeEEEE-EEECCEEEEEEcCCCCCHHHHHHHHHHcCCEEEeCCEEEEE
Confidence 359999987 77788899999999999999876 557889999965543
No 10
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=97.43 E-value=7.1e-05 Score=77.15 Aligned_cols=47 Identities=28% Similarity=0.280 Sum_probs=39.3
Q ss_pred CceeeecccceecCCCCEEEEEecCCCCcccccc---cCCCceeecCceee
Q 008523 319 RQILSLHSGCNMGKDGDVALFFGLSGTGKTTLST---DHNRYLIGDDEHCW 366 (563)
Q Consensus 319 ~G~L~mH~sanvg~~G~valfFGLSGTGKTTLsa---d~~r~lIgDDe~~w 366 (563)
..++++||++ +..+|..++|.|.||+|||||+. ..+..||+||....
T Consensus 130 ~~~~~~H~~~-v~~~g~~vl~~G~sG~GKSt~a~~l~~~g~~lv~dD~~~i 179 (314)
T 1ko7_A 130 ARTTSLHGVL-VDVYGVGVLITGDSGIGKSETALELIKRGHRLVADDNVEI 179 (314)
T ss_dssp CEEEEEESEE-EEETTEEEEEEESTTSSHHHHHHHHHHTTCEEEESSEEEE
T ss_pred ccceeeeEEE-EEECCEEEEEEeCCCCCHHHHHHHHHhcCCceecCCeEEE
Confidence 4579999987 66688999999999999999776 55778999996543
No 11
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=97.17 E-value=0.00014 Score=71.02 Aligned_cols=49 Identities=27% Similarity=0.194 Sum_probs=38.6
Q ss_pred cCceeeecccceecCCCCEEEEEecCCCCcccccc---cCCCceeecCceeec
Q 008523 318 KRQILSLHSGCNMGKDGDVALFFGLSGTGKTTLST---DHNRYLIGDDEHCWG 367 (563)
Q Consensus 318 ~~G~L~mH~sanvg~~G~valfFGLSGTGKTTLsa---d~~r~lIgDDe~~w~ 367 (563)
..+.+++||++ +..+|..++|.|+||+|||||+. .....+|.||...+.
T Consensus 19 ~a~~~~lHa~~-v~~~g~~ilI~GpsGsGKStLA~~La~~g~~iIsdDs~~v~ 70 (205)
T 2qmh_A 19 LAERRSMHGVL-VDIYGLGVLITGDSGVGKSETALELVQRGHRLIADDRVDVY 70 (205)
T ss_dssp --CCCCEESEE-EEETTEEEEEECCCTTTTHHHHHHHHTTTCEEEESSEEEEE
T ss_pred cCcceeeeEEE-EEECCEEEEEECCCCCCHHHHHHHHHHhCCeEEecchhhee
Confidence 46678999998 66788899999999999999886 334579999965544
No 12
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.27 E-value=0.011 Score=54.24 Aligned_cols=21 Identities=29% Similarity=0.583 Sum_probs=18.9
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
..|..+++.|+||||||||..
T Consensus 7 ~~gei~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHH
Confidence 468899999999999999876
No 13
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.10 E-value=0.016 Score=53.32 Aligned_cols=20 Identities=30% Similarity=0.466 Sum_probs=17.9
Q ss_pred CCCEEEEEecCCCCcccccc
Q 008523 333 DGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 333 ~G~valfFGLSGTGKTTLsa 352 (563)
.|..+++.|+||||||||..
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~ 25 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVR 25 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHH
Confidence 57899999999999999765
No 14
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.05 E-value=0.015 Score=52.88 Aligned_cols=21 Identities=33% Similarity=0.678 Sum_probs=18.6
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
+.|..+++.|+||||||||..
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~ 27 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAE 27 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHH
Confidence 467899999999999999765
No 15
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.01 E-value=0.015 Score=53.40 Aligned_cols=20 Identities=15% Similarity=0.419 Sum_probs=17.8
Q ss_pred CCCEEEEEecCCCCcccccc
Q 008523 333 DGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 333 ~G~valfFGLSGTGKTTLsa 352 (563)
.|..+++.|+||+|||||..
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~ 23 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKN 23 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 46789999999999999765
No 16
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=93.88 E-value=0.017 Score=53.83 Aligned_cols=21 Identities=48% Similarity=0.707 Sum_probs=18.7
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
..|.++++.|+||||||||+.
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~ 43 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLAC 43 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHH
Confidence 568899999999999999765
No 17
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=93.76 E-value=0.018 Score=51.78 Aligned_cols=19 Identities=21% Similarity=0.323 Sum_probs=16.8
Q ss_pred CCEEEEEecCCCCcccccc
Q 008523 334 GDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 334 G~valfFGLSGTGKTTLsa 352 (563)
+..+++.|+|||||||++.
T Consensus 3 ~~~i~l~G~~GsGKST~a~ 21 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVR 21 (178)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 4679999999999999875
No 18
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=93.73 E-value=0.021 Score=53.59 Aligned_cols=21 Identities=33% Similarity=0.460 Sum_probs=18.1
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
..|..+++.|+||+|||||..
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~ 38 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVR 38 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 458899999999999999765
No 19
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=93.63 E-value=0.018 Score=54.90 Aligned_cols=21 Identities=33% Similarity=0.340 Sum_probs=18.2
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
+.|..+++.|+||+|||||..
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl~ 41 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLIK 41 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 568899999999999999765
No 20
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=93.42 E-value=0.024 Score=51.97 Aligned_cols=20 Identities=35% Similarity=0.519 Sum_probs=17.9
Q ss_pred CCCEEEEEecCCCCcccccc
Q 008523 333 DGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 333 ~G~valfFGLSGTGKTTLsa 352 (563)
.|..+++.|+||||||||+.
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~ 24 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRK 24 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 57789999999999999875
No 21
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=93.33 E-value=0.024 Score=53.20 Aligned_cols=21 Identities=33% Similarity=0.536 Sum_probs=18.6
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
+.|..+++.|+||+|||||+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~ 40 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSN 40 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHH
Confidence 457899999999999999875
No 22
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=93.28 E-value=0.026 Score=53.12 Aligned_cols=21 Identities=33% Similarity=0.498 Sum_probs=18.5
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
+.|..++|.|+||+|||||..
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~ 26 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVRE 26 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHH
T ss_pred CCCcEEEEECcCCCCHHHHHH
Confidence 468899999999999999765
No 23
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=93.14 E-value=0.022 Score=51.05 Aligned_cols=19 Identities=26% Similarity=0.468 Sum_probs=16.8
Q ss_pred CCEEEEEecCCCCcccccc
Q 008523 334 GDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 334 G~valfFGLSGTGKTTLsa 352 (563)
+..+++.|+||||||||+.
T Consensus 4 ~~~i~l~G~~GsGKSTl~~ 22 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGR 22 (173)
T ss_dssp CCCEEEECCTTSCHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4579999999999999876
No 24
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=93.07 E-value=0.03 Score=54.06 Aligned_cols=21 Identities=29% Similarity=0.468 Sum_probs=18.3
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
+.|..+++.|+||+|||||..
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk 34 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQ 34 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHH
Confidence 578999999999999999765
No 25
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=92.96 E-value=0.025 Score=52.14 Aligned_cols=19 Identities=42% Similarity=0.508 Sum_probs=16.3
Q ss_pred CCEEEEEecCCCCcccccc
Q 008523 334 GDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 334 G~valfFGLSGTGKTTLsa 352 (563)
|+++++.|+||+|||||..
T Consensus 1 ~~ii~l~GpsGaGKsTl~~ 19 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLK 19 (186)
T ss_dssp CCCEEEESSSSSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 4678999999999999764
No 26
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=92.88 E-value=0.025 Score=53.01 Aligned_cols=20 Identities=35% Similarity=0.451 Sum_probs=16.4
Q ss_pred CCCEEEEEecCCCCcccccc
Q 008523 333 DGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 333 ~G~valfFGLSGTGKTTLsa 352 (563)
.|..++|.|+||+|||||..
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~ 22 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLK 22 (198)
T ss_dssp --CCEEEECCTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 46789999999999999765
No 27
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=92.82 E-value=0.032 Score=51.85 Aligned_cols=21 Identities=33% Similarity=0.601 Sum_probs=18.0
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
..|..+++.|+||||||||+.
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~ 47 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAH 47 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHH
Confidence 357899999999999999875
No 28
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=92.72 E-value=0.032 Score=50.26 Aligned_cols=20 Identities=30% Similarity=0.750 Sum_probs=17.7
Q ss_pred CCCEEEEEecCCCCcccccc
Q 008523 333 DGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 333 ~G~valfFGLSGTGKTTLsa 352 (563)
.|..+++.|+||+|||||+.
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~ 26 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVAS 26 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHH
Confidence 46789999999999999875
No 29
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=92.70 E-value=0.033 Score=52.86 Aligned_cols=21 Identities=33% Similarity=0.452 Sum_probs=14.4
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
+.|..+++.|+||||||||..
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl~~ 45 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTVAN 45 (231)
T ss_dssp ECCCEEEEECSCC----CHHH
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 458899999999999999754
No 30
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=92.62 E-value=0.028 Score=52.46 Aligned_cols=20 Identities=35% Similarity=0.321 Sum_probs=17.9
Q ss_pred CCCEEEEEecCCCCcccccc
Q 008523 333 DGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 333 ~G~valfFGLSGTGKTTLsa 352 (563)
.|..++|.|+||+|||||+.
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~ 30 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIK 30 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHH
Confidence 57789999999999999775
No 31
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=92.61 E-value=0.035 Score=51.53 Aligned_cols=21 Identities=33% Similarity=0.260 Sum_probs=17.9
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
+.|..+++.|.||||||||+.
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~ 24 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQ 24 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHH
Confidence 356789999999999999876
No 32
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=92.47 E-value=0.03 Score=50.85 Aligned_cols=20 Identities=40% Similarity=0.662 Sum_probs=17.7
Q ss_pred CCCEEEEEecCCCCcccccc
Q 008523 333 DGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 333 ~G~valfFGLSGTGKTTLsa 352 (563)
.|..++++|++|||||||..
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~ 56 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAV 56 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 37789999999999999875
No 33
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=92.37 E-value=0.043 Score=53.33 Aligned_cols=21 Identities=38% Similarity=0.722 Sum_probs=19.0
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
..|..+++.|+||||||||..
T Consensus 29 ~~Ge~~~iiG~nGsGKSTLl~ 49 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTMLN 49 (235)
T ss_dssp CTTCEEEEECSTTSSHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHH
Confidence 678999999999999999765
No 34
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=92.27 E-value=0.042 Score=52.94 Aligned_cols=21 Identities=43% Similarity=0.676 Sum_probs=18.8
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
..|..+++.|+||+|||||..
T Consensus 28 ~~Ge~~~iiG~nGsGKSTLl~ 48 (224)
T 2pcj_A 28 KKGEFVSIIGASGSGKSTLLY 48 (224)
T ss_dssp ETTCEEEEEECTTSCHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 578899999999999999765
No 35
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=92.25 E-value=0.031 Score=51.07 Aligned_cols=19 Identities=26% Similarity=0.445 Sum_probs=16.4
Q ss_pred CCEEEEEecCCCCcccccc
Q 008523 334 GDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 334 G~valfFGLSGTGKTTLsa 352 (563)
|..+++.|+||+|||||..
T Consensus 2 g~ii~l~G~~GaGKSTl~~ 20 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCK 20 (189)
T ss_dssp EEEEEEECSTTSSHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHH
Confidence 4578999999999999765
No 36
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=92.19 E-value=0.043 Score=50.92 Aligned_cols=21 Identities=33% Similarity=0.395 Sum_probs=18.1
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
..|..+++.|+|||||||++.
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~ 43 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGK 43 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHH
Confidence 457899999999999999876
No 37
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=92.17 E-value=0.045 Score=50.33 Aligned_cols=21 Identities=33% Similarity=0.427 Sum_probs=18.7
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
+.|+++++.|++|+|||||..
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr 51 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTR 51 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 568899999999999999765
No 38
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=92.12 E-value=0.042 Score=48.68 Aligned_cols=17 Identities=18% Similarity=0.192 Sum_probs=15.4
Q ss_pred EEEEEecCCCCcccccc
Q 008523 336 VALFFGLSGTGKTTLST 352 (563)
Q Consensus 336 valfFGLSGTGKTTLsa 352 (563)
.+++.|+|||||||++.
T Consensus 3 ~i~l~G~~GsGKsT~~~ 19 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAA 19 (173)
T ss_dssp EEEEECSSSSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58999999999999876
No 39
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=92.06 E-value=0.041 Score=48.24 Aligned_cols=17 Identities=35% Similarity=0.739 Sum_probs=15.4
Q ss_pred EEEEEecCCCCcccccc
Q 008523 336 VALFFGLSGTGKTTLST 352 (563)
Q Consensus 336 valfFGLSGTGKTTLsa 352 (563)
.+++.|++||||||++.
T Consensus 3 ~I~l~G~~GsGKsT~a~ 19 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAK 19 (179)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 68999999999999776
No 40
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=92.02 E-value=0.045 Score=49.30 Aligned_cols=19 Identities=37% Similarity=0.550 Sum_probs=16.8
Q ss_pred CCEEEEEecCCCCcccccc
Q 008523 334 GDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 334 G~valfFGLSGTGKTTLsa 352 (563)
|..++|.|++||||||++.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~ 21 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQ 21 (192)
T ss_dssp CCEEEEECCTTSCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4679999999999999776
No 41
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=91.94 E-value=0.047 Score=51.35 Aligned_cols=21 Identities=43% Similarity=0.697 Sum_probs=18.5
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
+.|..+++.|++|+|||||..
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~ 48 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAA 48 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHH
Confidence 468899999999999999765
No 42
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=91.91 E-value=0.045 Score=50.79 Aligned_cols=21 Identities=33% Similarity=0.542 Sum_probs=18.3
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
+.|..+++.|+||+|||||..
T Consensus 23 ~~G~~~~l~G~nGsGKSTll~ 43 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLAH 43 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHH
Confidence 457899999999999999765
No 43
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=91.91 E-value=0.051 Score=49.24 Aligned_cols=19 Identities=42% Similarity=0.508 Sum_probs=16.9
Q ss_pred CCEEEEEecCCCCcccccc
Q 008523 334 GDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 334 G~valfFGLSGTGKTTLsa 352 (563)
+..++|.|++||||||++.
T Consensus 5 ~~~I~l~G~~GsGKST~~~ 23 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQ 23 (193)
T ss_dssp CEEEEEEESTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 5679999999999999876
No 44
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=91.90 E-value=0.045 Score=49.63 Aligned_cols=21 Identities=48% Similarity=0.621 Sum_probs=17.7
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
..|..++|.|++||||||++.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~ 23 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSM 23 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHH
Confidence 357789999999999999765
No 45
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=91.79 E-value=0.055 Score=53.51 Aligned_cols=21 Identities=43% Similarity=0.707 Sum_probs=19.0
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
+.|..+++.|+||+|||||..
T Consensus 30 ~~Ge~~~liG~nGsGKSTLlk 50 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFLR 50 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 678999999999999999765
No 46
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=91.52 E-value=0.051 Score=48.47 Aligned_cols=17 Identities=35% Similarity=0.642 Sum_probs=15.5
Q ss_pred EEEEEecCCCCcccccc
Q 008523 336 VALFFGLSGTGKTTLST 352 (563)
Q Consensus 336 valfFGLSGTGKTTLsa 352 (563)
.++|.|++|+||||++.
T Consensus 4 ~I~i~G~~GsGKST~a~ 20 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAR 20 (181)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEecCCCCCHHHHHH
Confidence 58999999999999876
No 47
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=91.50 E-value=0.056 Score=48.95 Aligned_cols=19 Identities=32% Similarity=0.518 Sum_probs=16.9
Q ss_pred CCEEEEEecCCCCcccccc
Q 008523 334 GDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 334 G~valfFGLSGTGKTTLsa 352 (563)
+..+++.|++||||||++.
T Consensus 5 ~~~i~l~G~~GsGKst~a~ 23 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGS 23 (185)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 4679999999999999876
No 48
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=91.47 E-value=0.063 Score=52.24 Aligned_cols=21 Identities=29% Similarity=0.566 Sum_probs=18.9
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
+.|..+++.|+||+|||||..
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~ 49 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSLLS 49 (237)
T ss_dssp CTTCEEEEECSTTSSHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 678999999999999999765
No 49
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=91.38 E-value=0.066 Score=51.40 Aligned_cols=21 Identities=19% Similarity=0.521 Sum_probs=18.5
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
-.|+.++|.|+||+|||||..
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~ 37 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKN 37 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHH
T ss_pred CCCCEEEEECcCCCCHHHHHH
Confidence 357899999999999999765
No 50
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=91.35 E-value=0.067 Score=55.89 Aligned_cols=21 Identities=43% Similarity=0.718 Sum_probs=18.9
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
..|..+++.|+||||||||..
T Consensus 28 ~~Ge~~~llGpsGsGKSTLLr 48 (359)
T 3fvq_A 28 DPGEILFIIGASGCGKTTLLR 48 (359)
T ss_dssp CTTCEEEEEESTTSSHHHHHH
T ss_pred cCCCEEEEECCCCchHHHHHH
Confidence 678999999999999999765
No 51
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=91.26 E-value=0.07 Score=48.20 Aligned_cols=20 Identities=30% Similarity=0.584 Sum_probs=17.8
Q ss_pred CCCEEEEEecCCCCcccccc
Q 008523 333 DGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 333 ~G~valfFGLSGTGKTTLsa 352 (563)
.|..++++|++|+|||||..
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~ 54 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQ 54 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 46789999999999999875
No 52
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=91.21 E-value=0.06 Score=48.42 Aligned_cols=17 Identities=29% Similarity=0.683 Sum_probs=15.4
Q ss_pred EEEEEecCCCCcccccc
Q 008523 336 VALFFGLSGTGKTTLST 352 (563)
Q Consensus 336 valfFGLSGTGKTTLsa 352 (563)
.++|.|++||||||++.
T Consensus 3 ~I~i~G~~GsGKsT~~~ 19 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLA 19 (194)
T ss_dssp EEEEEECTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58999999999999876
No 53
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=91.18 E-value=0.052 Score=49.19 Aligned_cols=20 Identities=40% Similarity=0.390 Sum_probs=17.3
Q ss_pred CCCEEEEEecCCCCcccccc
Q 008523 333 DGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 333 ~G~valfFGLSGTGKTTLsa 352 (563)
.+..++|.|+||+||||++.
T Consensus 10 ~~~~i~i~G~~GsGKst~~~ 29 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGK 29 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHH
Confidence 35679999999999999876
No 54
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=91.16 E-value=0.074 Score=50.95 Aligned_cols=21 Identities=29% Similarity=0.498 Sum_probs=18.3
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
..|..+++.|+||+|||||..
T Consensus 20 ~~Ge~~~liG~nGsGKSTLl~ 40 (208)
T 3b85_A 20 DTNTIVFGLGPAGSGKTYLAM 40 (208)
T ss_dssp HHCSEEEEECCTTSSTTHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 458899999999999999764
No 55
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=91.10 E-value=0.071 Score=52.97 Aligned_cols=21 Identities=38% Similarity=0.781 Sum_probs=19.0
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
+.|..+++.|+||+|||||..
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk 68 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLR 68 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHH
T ss_pred cCCCEEEEEcCCCCcHHHHHH
Confidence 678999999999999999765
No 56
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=91.03 E-value=0.065 Score=52.67 Aligned_cols=21 Identities=48% Similarity=0.831 Sum_probs=18.9
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
+.|..+++.|+||+|||||..
T Consensus 31 ~~Ge~~~liG~nGsGKSTLlk 51 (257)
T 1g6h_A 31 NKGDVTLIIGPNGSGKSTLIN 51 (257)
T ss_dssp ETTCEEEEECSTTSSHHHHHH
T ss_pred eCCCEEEEECCCCCCHHHHHH
Confidence 578899999999999999765
No 57
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=91.00 E-value=0.066 Score=52.47 Aligned_cols=21 Identities=48% Similarity=0.743 Sum_probs=18.9
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
+.|..+++.|+||+|||||..
T Consensus 33 ~~Ge~~~i~G~nGsGKSTLl~ 53 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTLTK 53 (247)
T ss_dssp ETTCEEEEECSTTSSHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 678899999999999999765
No 58
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=90.95 E-value=0.067 Score=51.68 Aligned_cols=21 Identities=33% Similarity=0.539 Sum_probs=18.8
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
+.|..+++.|+||+|||||..
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl~ 52 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSLLM 52 (229)
T ss_dssp ETTCEEEEECCTTSSHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 578899999999999999765
No 59
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.92 E-value=0.068 Score=52.02 Aligned_cols=21 Identities=33% Similarity=0.602 Sum_probs=18.8
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
+.|..+++.|+||+|||||..
T Consensus 30 ~~Ge~~~l~G~nGsGKSTLl~ 50 (240)
T 1ji0_A 30 PRGQIVTLIGANGAGKTTTLS 50 (240)
T ss_dssp ETTCEEEEECSTTSSHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 578899999999999999765
No 60
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=90.90 E-value=0.068 Score=52.32 Aligned_cols=21 Identities=38% Similarity=0.713 Sum_probs=18.9
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
..|..+++.|+||+|||||..
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLlk 47 (250)
T 2d2e_A 27 PKGEVHALMGPNGAGKSTLGK 47 (250)
T ss_dssp ETTCEEEEECSTTSSHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 578899999999999999765
No 61
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=90.87 E-value=0.071 Score=51.91 Aligned_cols=21 Identities=33% Similarity=0.553 Sum_probs=18.9
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
+.|..+++.|+||+|||||..
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~ 46 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFS 46 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 678899999999999999765
No 62
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=90.80 E-value=0.08 Score=48.78 Aligned_cols=20 Identities=40% Similarity=0.632 Sum_probs=17.9
Q ss_pred CCCEEEEEecCCCCcccccc
Q 008523 333 DGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 333 ~G~valfFGLSGTGKTTLsa 352 (563)
.|..++|.|.+||||||++.
T Consensus 9 ~~~~I~l~G~~GsGKST~~~ 28 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSK 28 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHH
Confidence 46789999999999999876
No 63
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=90.80 E-value=0.07 Score=53.01 Aligned_cols=21 Identities=33% Similarity=0.632 Sum_probs=18.9
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
..|..+++.|+||+|||||..
T Consensus 35 ~~Ge~~~liG~nGsGKSTLl~ 55 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTLLR 55 (266)
T ss_dssp ETTCEEEEECCTTSCHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHH
Confidence 578999999999999999765
No 64
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=90.79 E-value=0.079 Score=52.68 Aligned_cols=21 Identities=33% Similarity=0.632 Sum_probs=19.0
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
+.|..+++.|+||+|||||..
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLlk 63 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVAA 63 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 678899999999999999765
No 65
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=90.78 E-value=0.07 Score=49.80 Aligned_cols=19 Identities=42% Similarity=0.469 Sum_probs=16.8
Q ss_pred CCEEEEEecCCCCcccccc
Q 008523 334 GDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 334 G~valfFGLSGTGKTTLsa 352 (563)
+.++++.|+|||||||++.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~ 23 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCK 23 (227)
T ss_dssp SCEEEEECCTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3579999999999999876
No 66
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=90.77 E-value=0.056 Score=49.97 Aligned_cols=19 Identities=26% Similarity=0.594 Sum_probs=16.8
Q ss_pred CCEEEEEecCCCCcccccc
Q 008523 334 GDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 334 G~valfFGLSGTGKTTLsa 352 (563)
...+++.|+||+||||++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~ 36 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGE 36 (202)
T ss_dssp SSCEEEECSTTSCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3579999999999999876
No 67
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=90.74 E-value=0.072 Score=53.34 Aligned_cols=21 Identities=43% Similarity=0.678 Sum_probs=19.0
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
+.|..+++.|+||+|||||..
T Consensus 32 ~~Ge~~~iiGpnGsGKSTLl~ 52 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKSTLFQ 52 (275)
T ss_dssp ETTSEEEEECCTTSSHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 678999999999999999765
No 68
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=90.73 E-value=0.081 Score=49.07 Aligned_cols=36 Identities=28% Similarity=0.350 Sum_probs=25.8
Q ss_pred CCCCEEEEEecCCCCcccccc---cC--CCceeecCceeec
Q 008523 332 KDGDVALFFGLSGTGKTTLST---DH--NRYLIGDDEHCWG 367 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa---d~--~r~lIgDDe~~w~ 367 (563)
+.|..+++.|.||+|||||+. .. +-.+|..|...|.
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D~~~~~ 59 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDFFKP 59 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGGGGBCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCCccccC
Confidence 457889999999999999876 21 2235666655554
No 69
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.68 E-value=0.083 Score=52.26 Aligned_cols=21 Identities=33% Similarity=0.575 Sum_probs=18.9
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
..|..+++.|+||+|||||..
T Consensus 39 ~~Gei~~l~G~NGsGKSTLlk 59 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTTLR 59 (256)
T ss_dssp CTTCEEEEECCTTSSHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHH
Confidence 578999999999999999765
No 70
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=90.61 E-value=0.082 Score=55.70 Aligned_cols=21 Identities=43% Similarity=0.790 Sum_probs=18.9
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
+.|..++++|+||||||||..
T Consensus 27 ~~Ge~~~llGpsGsGKSTLLr 47 (381)
T 3rlf_A 27 HEGEFVVFVGPSGCGKSTLLR 47 (381)
T ss_dssp CTTCEEEEECCTTSSHHHHHH
T ss_pred CCCCEEEEEcCCCchHHHHHH
Confidence 678999999999999999764
No 71
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=90.59 E-value=0.085 Score=52.08 Aligned_cols=21 Identities=29% Similarity=0.635 Sum_probs=18.9
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
+.|..+++.|+||+|||||..
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl~ 64 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIAK 64 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 678899999999999999765
No 72
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=90.59 E-value=0.083 Score=55.09 Aligned_cols=21 Identities=48% Similarity=0.681 Sum_probs=18.9
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
+.|..+++.|+||||||||..
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr 47 (359)
T 2yyz_A 27 KDGEFVALLGPSGCGKTTTLL 47 (359)
T ss_dssp CTTCEEEEECSTTSSHHHHHH
T ss_pred cCCCEEEEEcCCCchHHHHHH
Confidence 678999999999999999765
No 73
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=90.56 E-value=0.086 Score=52.15 Aligned_cols=21 Identities=38% Similarity=0.672 Sum_probs=18.9
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
..|..+++.|+||+|||||..
T Consensus 31 ~~Ge~~~liG~nGsGKSTLl~ 51 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTLLQ 51 (266)
T ss_dssp CTTCEEEEECSTTSSHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHH
Confidence 678999999999999999765
No 74
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=90.55 E-value=0.086 Score=52.25 Aligned_cols=21 Identities=43% Similarity=0.748 Sum_probs=18.9
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
..|..+++.|+||+|||||..
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLlk 64 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLSA 64 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 678899999999999999765
No 75
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=90.52 E-value=0.074 Score=53.94 Aligned_cols=20 Identities=45% Similarity=0.712 Sum_probs=18.0
Q ss_pred CCCEEEEEecCCCCcccccc
Q 008523 333 DGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 333 ~G~valfFGLSGTGKTTLsa 352 (563)
.|.++++.|+||+|||||..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~ 120 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIA 120 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHH
Confidence 57899999999999999776
No 76
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=90.43 E-value=0.087 Score=54.99 Aligned_cols=21 Identities=48% Similarity=0.759 Sum_probs=18.9
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
+.|..+++.|+||||||||..
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr 47 (362)
T 2it1_A 27 KDGEFMALLGPSGSGKSTLLY 47 (362)
T ss_dssp CTTCEEEEECCTTSSHHHHHH
T ss_pred CCCCEEEEECCCCchHHHHHH
Confidence 678899999999999999765
No 77
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=90.42 E-value=0.08 Score=52.87 Aligned_cols=20 Identities=35% Similarity=0.502 Sum_probs=17.7
Q ss_pred CCCEEEEEecCCCCcccccc
Q 008523 333 DGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 333 ~G~valfFGLSGTGKTTLsa 352 (563)
.+..+++.|+||||||||+.
T Consensus 32 ~~~livl~G~sGsGKSTla~ 51 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRS 51 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 46689999999999999876
No 78
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=90.39 E-value=0.088 Score=55.15 Aligned_cols=21 Identities=48% Similarity=0.726 Sum_probs=18.9
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
+.|..+++.|+||||||||..
T Consensus 35 ~~Ge~~~llGpnGsGKSTLLr 55 (372)
T 1v43_A 35 KDGEFLVLLGPSGCGKTTTLR 55 (372)
T ss_dssp CTTCEEEEECCTTSSHHHHHH
T ss_pred CCCCEEEEECCCCChHHHHHH
Confidence 678999999999999999765
No 79
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=90.37 E-value=0.068 Score=51.55 Aligned_cols=21 Identities=48% Similarity=0.729 Sum_probs=18.6
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
+.|..+++.|+||+|||||..
T Consensus 33 ~~Ge~~~iiG~NGsGKSTLlk 53 (214)
T 1sgw_A 33 EKGNVVNFHGPNGIGKTTLLK 53 (214)
T ss_dssp ETTCCEEEECCTTSSHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 568899999999999999765
No 80
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=90.31 E-value=0.076 Score=48.60 Aligned_cols=19 Identities=37% Similarity=0.691 Sum_probs=16.8
Q ss_pred CCEEEEEecCCCCcccccc
Q 008523 334 GDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 334 G~valfFGLSGTGKTTLsa 352 (563)
|..++|.|++||||||++.
T Consensus 4 ~~~I~i~G~~GsGKsT~~~ 22 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQAT 22 (213)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHH
Confidence 4579999999999999876
No 81
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=90.31 E-value=0.098 Score=48.17 Aligned_cols=20 Identities=30% Similarity=0.494 Sum_probs=17.8
Q ss_pred CCCEEEEEecCCCCcccccc
Q 008523 333 DGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 333 ~G~valfFGLSGTGKTTLsa 352 (563)
.|..++|.|.+||||||++.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~ 27 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSR 27 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 46789999999999999876
No 82
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=90.29 E-value=0.064 Score=48.50 Aligned_cols=19 Identities=37% Similarity=0.765 Sum_probs=16.7
Q ss_pred CCEEEEEecCCCCcccccc
Q 008523 334 GDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 334 G~valfFGLSGTGKTTLsa 352 (563)
|..++|.|++||||||++.
T Consensus 4 g~~I~l~G~~GsGKST~~~ 22 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQAS 22 (186)
T ss_dssp EEEEEEECCTTSCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4579999999999999876
No 83
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=90.24 E-value=0.096 Score=48.35 Aligned_cols=21 Identities=29% Similarity=0.377 Sum_probs=17.7
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
..+..++|.|++||||||++.
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~ 38 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAV 38 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHH
Confidence 345689999999999999876
No 84
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=90.22 E-value=0.082 Score=53.77 Aligned_cols=21 Identities=19% Similarity=0.058 Sum_probs=18.9
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
+.|.++.+.|+||+|||||+.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~ 108 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTAR 108 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHH
Confidence 568899999999999999875
No 85
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=90.20 E-value=0.085 Score=52.81 Aligned_cols=21 Identities=48% Similarity=0.824 Sum_probs=18.8
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
+.|..+++.|+||+|||||..
T Consensus 45 ~~Ge~~~liG~NGsGKSTLlk 65 (279)
T 2ihy_A 45 AKGDKWILYGLNGAGKTTLLN 65 (279)
T ss_dssp ETTCEEEEECCTTSSHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHH
Confidence 578899999999999999765
No 86
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=90.17 E-value=0.088 Score=48.01 Aligned_cols=20 Identities=50% Similarity=0.770 Sum_probs=17.7
Q ss_pred CCCEEEEEecCCCCcccccc
Q 008523 333 DGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 333 ~G~valfFGLSGTGKTTLsa 352 (563)
.|..++|.|++|+||||++.
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~ 31 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIAT 31 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHH
Confidence 46789999999999999775
No 87
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=90.16 E-value=0.085 Score=54.98 Aligned_cols=21 Identities=38% Similarity=0.729 Sum_probs=18.7
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
+.|..+++.|+||||||||..
T Consensus 39 ~~Ge~~~llGpnGsGKSTLLr 59 (355)
T 1z47_A 39 REGEMVGLLGPSGSGKTTILR 59 (355)
T ss_dssp ETTCEEEEECSTTSSHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHH
Confidence 578899999999999999765
No 88
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=90.06 E-value=0.087 Score=50.67 Aligned_cols=21 Identities=19% Similarity=0.120 Sum_probs=18.6
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
+.|.++.+.|++|||||||+.
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k 43 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCE 43 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHH
Confidence 457889999999999999876
No 89
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=90.05 E-value=0.088 Score=55.09 Aligned_cols=21 Identities=48% Similarity=0.749 Sum_probs=18.9
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
+.|..+++.|+||||||||..
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr 47 (372)
T 1g29_1 27 KDGEFMILLGPSGCGKTTTLR 47 (372)
T ss_dssp ETTCEEEEECSTTSSHHHHHH
T ss_pred cCCCEEEEECCCCcHHHHHHH
Confidence 578899999999999999765
No 90
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=90.05 E-value=0.089 Score=51.79 Aligned_cols=21 Identities=38% Similarity=0.684 Sum_probs=18.8
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
+.|..+++.|+||+|||||..
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~ 49 (253)
T 2nq2_C 29 NKGDILAVLGQNGCGKSTLLD 49 (253)
T ss_dssp ETTCEEEEECCSSSSHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 568899999999999999765
No 91
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=89.89 E-value=0.097 Score=48.81 Aligned_cols=21 Identities=43% Similarity=0.362 Sum_probs=18.1
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
..|.++.+.|.||+|||||+.
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~ 40 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLAN 40 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHH
Confidence 346789999999999999875
No 92
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=89.84 E-value=0.095 Score=51.60 Aligned_cols=21 Identities=33% Similarity=0.675 Sum_probs=18.8
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
..|..+++.|+||+|||||..
T Consensus 24 ~~Ge~~~liG~NGsGKSTLlk 44 (249)
T 2qi9_C 24 RAGEILHLVGPNGAGKSTLLA 44 (249)
T ss_dssp ETTCEEEEECCTTSSHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHH
Confidence 568899999999999999765
No 93
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=89.84 E-value=0.095 Score=51.82 Aligned_cols=21 Identities=29% Similarity=0.444 Sum_probs=18.3
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
+.|..+++.|+||+|||||..
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~ 43 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIA 43 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHH
Confidence 467799999999999999765
No 94
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=89.79 E-value=0.097 Score=48.28 Aligned_cols=21 Identities=38% Similarity=0.449 Sum_probs=18.3
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
..|..+++.|++|+|||||..
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~ 41 (235)
T 2w0m_A 21 PQGFFIALTGEPGTGKTIFSL 41 (235)
T ss_dssp ETTCEEEEECSTTSSHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHH
Confidence 357899999999999999865
No 95
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=89.73 E-value=0.054 Score=49.31 Aligned_cols=19 Identities=26% Similarity=0.441 Sum_probs=17.0
Q ss_pred CCEEEEEecCCCCcccccc
Q 008523 334 GDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 334 G~valfFGLSGTGKTTLsa 352 (563)
+..+++.|++||||||++.
T Consensus 12 ~~~I~l~G~~GsGKsT~a~ 30 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCE 30 (199)
T ss_dssp SCEEEEEECTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 5689999999999999875
No 96
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=89.72 E-value=0.097 Score=49.93 Aligned_cols=21 Identities=33% Similarity=0.306 Sum_probs=18.7
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
+.|..+.|.|.+|+|||||..
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~ 38 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLN 38 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHH
Confidence 568899999999999999765
No 97
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=89.71 E-value=0.11 Score=47.92 Aligned_cols=21 Identities=33% Similarity=0.502 Sum_probs=18.7
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
+.|..+++.|.+|+|||||+.
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~ 38 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLAL 38 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHH
T ss_pred cCCEEEEEECCCCCCHHHHHH
Confidence 457899999999999999875
No 98
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=89.71 E-value=0.097 Score=47.06 Aligned_cols=19 Identities=26% Similarity=0.331 Sum_probs=12.7
Q ss_pred CCEEEEEecCCCCcccccc
Q 008523 334 GDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 334 G~valfFGLSGTGKTTLsa 352 (563)
+..++|.|++||||||++.
T Consensus 5 ~~~I~l~G~~GsGKST~a~ 23 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAH 23 (183)
T ss_dssp CCEEEEECCC----CHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4579999999999999876
No 99
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=89.61 E-value=0.08 Score=54.95 Aligned_cols=21 Identities=29% Similarity=0.575 Sum_probs=18.9
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
+.|..+++.|+||||||||..
T Consensus 24 ~~Ge~~~llGpnGsGKSTLLr 44 (348)
T 3d31_A 24 ESGEYFVILGPTGAGKTLFLE 44 (348)
T ss_dssp CTTCEEEEECCCTHHHHHHHH
T ss_pred cCCCEEEEECCCCccHHHHHH
Confidence 678999999999999999765
No 100
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=89.59 E-value=0.1 Score=50.03 Aligned_cols=19 Identities=32% Similarity=0.399 Sum_probs=17.0
Q ss_pred CCEEEEEecCCCCcccccc
Q 008523 334 GDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 334 G~valfFGLSGTGKTTLsa 352 (563)
+..+++.|++|+|||||..
T Consensus 27 ~~~i~l~G~~GsGKSTl~k 45 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQ 45 (246)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 5789999999999999775
No 101
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=89.58 E-value=0.1 Score=47.69 Aligned_cols=20 Identities=40% Similarity=0.602 Sum_probs=17.5
Q ss_pred CCCEEEEEecCCCCcccccc
Q 008523 333 DGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 333 ~G~valfFGLSGTGKTTLsa 352 (563)
.|..++|.|.+||||||++.
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~ 22 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCM 22 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHH
Confidence 36789999999999999876
No 102
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=89.51 E-value=0.12 Score=52.03 Aligned_cols=21 Identities=33% Similarity=0.539 Sum_probs=18.9
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
+.|..+++.|+||+|||||..
T Consensus 62 ~~Ge~~~i~G~NGsGKSTLlk 82 (290)
T 2bbs_A 62 ERGQLLAVAGSTGAGKTSLLM 82 (290)
T ss_dssp CTTCEEEEEESTTSSHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHH
Confidence 678999999999999999764
No 103
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=89.43 E-value=0.099 Score=47.54 Aligned_cols=17 Identities=41% Similarity=0.690 Sum_probs=15.2
Q ss_pred EEEEEecCCCCcccccc
Q 008523 336 VALFFGLSGTGKTTLST 352 (563)
Q Consensus 336 valfFGLSGTGKTTLsa 352 (563)
.++|.|.+||||||++.
T Consensus 2 ~I~i~G~~GsGKsT~~~ 18 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISA 18 (205)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCccCHHHHHH
Confidence 47899999999999876
No 104
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=89.41 E-value=0.12 Score=52.74 Aligned_cols=21 Identities=29% Similarity=0.469 Sum_probs=19.0
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
+.|..+++.|+||+|||||..
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~ 144 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCN 144 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHH
Confidence 568899999999999999776
No 105
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=89.36 E-value=0.13 Score=46.71 Aligned_cols=20 Identities=25% Similarity=0.441 Sum_probs=17.5
Q ss_pred CCCEEEEEecCCCCcccccc
Q 008523 333 DGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 333 ~G~valfFGLSGTGKTTLsa 352 (563)
.+..++|.|++||||||++.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~ 27 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCE 27 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 45689999999999999775
No 106
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=89.29 E-value=0.094 Score=49.48 Aligned_cols=19 Identities=37% Similarity=0.494 Sum_probs=16.7
Q ss_pred CCEEEEEecCCCCcccccc
Q 008523 334 GDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 334 G~valfFGLSGTGKTTLsa 352 (563)
|..+++.|++|+|||||..
T Consensus 1 G~~i~i~G~nG~GKTTll~ 19 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIH 19 (189)
T ss_dssp CCCEEEESCCSSCHHHHHH
T ss_pred CCEEEEECCCCChHHHHHH
Confidence 5678999999999999765
No 107
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=89.29 E-value=0.12 Score=50.32 Aligned_cols=21 Identities=38% Similarity=0.344 Sum_probs=18.5
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
..|.++.+.|+||||||||+.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k 45 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCK 45 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHH
Confidence 457899999999999999875
No 108
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=89.26 E-value=0.11 Score=48.58 Aligned_cols=21 Identities=33% Similarity=0.559 Sum_probs=18.5
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
+.|.++++.|++|+|||||..
T Consensus 22 ~~G~~~~i~G~~GsGKTtl~~ 42 (243)
T 1n0w_A 22 ETGSITEMFGEFRTGKTQICH 42 (243)
T ss_dssp ETTSEEEEECCTTSSHHHHHH
T ss_pred cCCeEEEEECCCCCcHHHHHH
Confidence 457899999999999999765
No 109
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=89.26 E-value=0.12 Score=51.33 Aligned_cols=20 Identities=40% Similarity=0.735 Sum_probs=18.2
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
+ |..+++.|+||+|||||..
T Consensus 29 ~-Ge~~~i~G~NGsGKSTLlk 48 (263)
T 2pjz_A 29 N-GEKVIILGPNGSGKTTLLR 48 (263)
T ss_dssp C-SSEEEEECCTTSSHHHHHH
T ss_pred C-CEEEEEECCCCCCHHHHHH
Confidence 5 9999999999999999765
No 110
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=89.19 E-value=0.11 Score=48.53 Aligned_cols=21 Identities=38% Similarity=0.569 Sum_probs=18.2
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
..|..++|.|++|+||||++.
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~ 43 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAV 43 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 457789999999999999876
No 111
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=89.06 E-value=0.1 Score=52.74 Aligned_cols=47 Identities=23% Similarity=0.323 Sum_probs=28.7
Q ss_pred hhHHHHHHHHHHhcccCceeeeccccee-cCCCCEEEEEecCCCCcccccc
Q 008523 303 EMKKGLFSVMHYLMPKRQILSLHSGCNM-GKDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 303 EiKK~iltl~n~~l~~~G~L~mH~sanv-g~~G~valfFGLSGTGKTTLsa 352 (563)
++++.+...+.-++.....+ -..+. ...|.++++.|++|+|||||..
T Consensus 71 ~~~~~~~~~l~~~l~~~~~~---~~l~~~~~~g~vi~lvG~nGsGKTTll~ 118 (302)
T 3b9q_A 71 EIKDALKESVLEMLAKKNSK---TELQLGFRKPAVIMIVGVNGGGKTTSLG 118 (302)
T ss_dssp HHHHHHHHHHHHHHCC--CC---CSCCCCSSSCEEEEEECCTTSCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcccc---cccccccCCCcEEEEEcCCCCCHHHHHH
Confidence 46666666664444321100 01122 2468899999999999999776
No 112
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=89.06 E-value=0.13 Score=45.26 Aligned_cols=19 Identities=26% Similarity=0.517 Sum_probs=16.5
Q ss_pred CCEEEEEecCCCCcccccc
Q 008523 334 GDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 334 G~valfFGLSGTGKTTLsa 352 (563)
...++|.|++|||||||+.
T Consensus 43 ~~~~ll~G~~G~GKT~l~~ 61 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVE 61 (195)
T ss_dssp SCEEEEECCTTSCHHHHHH
T ss_pred CCceEEECCCCCCHHHHHH
Confidence 4568999999999999875
No 113
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=89.03 E-value=0.24 Score=46.93 Aligned_cols=45 Identities=33% Similarity=0.442 Sum_probs=26.8
Q ss_pred hhHHHHHHHHHHhcccCceeeecccceecCCCCEEEEEecCCCCcccccc
Q 008523 303 EMKKGLFSVMHYLMPKRQILSLHSGCNMGKDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 303 EiKK~iltl~n~~l~~~G~L~mH~sanvg~~G~valfFGLSGTGKTTLsa 352 (563)
+.|+.+..+..++...+-+..+ | + .....++|.|++|||||+|+.
T Consensus 13 ~~~~~l~~~~~~~~~~~~~~~~-g-~---~~~~~vll~G~~GtGKT~la~ 57 (262)
T 2qz4_A 13 EAKLEVREFVDYLKSPERFLQL-G-A---KVPKGALLLGPPGCGKTLLAK 57 (262)
T ss_dssp HHHHHHHHHHHHHHCCC--------C---CCCCEEEEESCTTSSHHHHHH
T ss_pred HHHHHHHHHHHHHHCHHHHHHc-C-C---CCCceEEEECCCCCCHHHHHH
Confidence 4677776666553332222111 1 1 234569999999999999875
No 114
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=88.99 E-value=0.067 Score=49.37 Aligned_cols=17 Identities=35% Similarity=0.550 Sum_probs=15.4
Q ss_pred EEEEEecCCCCcccccc
Q 008523 336 VALFFGLSGTGKTTLST 352 (563)
Q Consensus 336 valfFGLSGTGKTTLsa 352 (563)
.++|.|+|||||||++.
T Consensus 2 ~I~i~G~~GsGKsTl~~ 18 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVE 18 (214)
T ss_dssp EEEEEEEEEEEHHHHHH
T ss_pred EEEEEcCCCCCHHHHHH
Confidence 58999999999999876
No 115
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=88.99 E-value=0.076 Score=55.11 Aligned_cols=21 Identities=38% Similarity=0.570 Sum_probs=18.9
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
+.|..+++.|+||||||||..
T Consensus 29 ~~Ge~~~llGpnGsGKSTLLr 49 (353)
T 1oxx_K 29 ENGERFGILGPSGAGKTTFMR 49 (353)
T ss_dssp CTTCEEEEECSCHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHH
Confidence 678999999999999999764
No 116
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=88.88 E-value=0.14 Score=53.80 Aligned_cols=21 Identities=38% Similarity=0.553 Sum_probs=19.1
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
+.|..+.+.|+||||||||..
T Consensus 52 ~~Gei~~IiGpnGaGKSTLlr 72 (366)
T 3tui_C 52 PAGQIYGVIGASGAGKSTLIR 72 (366)
T ss_dssp CTTCEEEEECCTTSSHHHHHH
T ss_pred cCCCEEEEEcCCCchHHHHHH
Confidence 678999999999999999765
No 117
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=88.88 E-value=0.13 Score=47.51 Aligned_cols=20 Identities=20% Similarity=0.330 Sum_probs=17.3
Q ss_pred CCCEEEEEecCCCCcccccc
Q 008523 333 DGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 333 ~G~valfFGLSGTGKTTLsa 352 (563)
.+..++|.|++|||||||+.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~ 70 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIH 70 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 34689999999999999875
No 118
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=88.82 E-value=0.099 Score=50.71 Aligned_cols=20 Identities=40% Similarity=0.454 Sum_probs=17.6
Q ss_pred CCCEEEEEecCCCCcccccc
Q 008523 333 DGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 333 ~G~valfFGLSGTGKTTLsa 352 (563)
.+..+++.|+|||||||++.
T Consensus 31 ~~~~i~l~G~~GsGKSTla~ 50 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHR 50 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 45689999999999999876
No 119
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=88.77 E-value=0.14 Score=47.03 Aligned_cols=20 Identities=40% Similarity=0.592 Sum_probs=17.6
Q ss_pred CCCEEEEEecCCCCcccccc
Q 008523 333 DGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 333 ~G~valfFGLSGTGKTTLsa 352 (563)
.+..+++.|.+||||||++.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~ 28 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAE 28 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 46789999999999999775
No 120
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=88.77 E-value=0.12 Score=46.56 Aligned_cols=19 Identities=32% Similarity=0.389 Sum_probs=16.5
Q ss_pred CCEEEEEecCCCCcccccc
Q 008523 334 GDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 334 G~valfFGLSGTGKTTLsa 352 (563)
+..++|.|.+||||||++.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~ 21 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCA 21 (196)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 3578999999999999875
No 121
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=88.72 E-value=0.13 Score=47.90 Aligned_cols=17 Identities=41% Similarity=0.546 Sum_probs=14.8
Q ss_pred EEEEEecCCCCcccccc
Q 008523 336 VALFFGLSGTGKTTLST 352 (563)
Q Consensus 336 valfFGLSGTGKTTLsa 352 (563)
.+++.|++|+|||||..
T Consensus 2 ~i~l~G~nGsGKTTLl~ 18 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVK 18 (178)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999999765
No 122
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=88.58 E-value=0.12 Score=50.41 Aligned_cols=17 Identities=29% Similarity=0.628 Sum_probs=15.5
Q ss_pred EEEEEecCCCCcccccc
Q 008523 336 VALFFGLSGTGKTTLST 352 (563)
Q Consensus 336 valfFGLSGTGKTTLsa 352 (563)
.+++.|++|||||||+.
T Consensus 3 li~I~G~~GSGKSTla~ 19 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAI 19 (253)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCcCHHHHHH
Confidence 58999999999999876
No 123
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=88.52 E-value=0.16 Score=53.60 Aligned_cols=21 Identities=33% Similarity=0.569 Sum_probs=18.9
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
+.|..+.+.|+||||||||..
T Consensus 45 ~~Ge~~~llGpsGsGKSTLLr 65 (390)
T 3gd7_A 45 SPGQRVGLLGRTGSGKSTLLS 65 (390)
T ss_dssp CTTCEEEEEESTTSSHHHHHH
T ss_pred cCCCEEEEECCCCChHHHHHH
Confidence 678999999999999999754
No 124
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=88.49 E-value=0.14 Score=51.41 Aligned_cols=21 Identities=19% Similarity=0.173 Sum_probs=18.3
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
..|.++.+.|.||+|||||+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~ 98 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTAR 98 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHH
Confidence 457789999999999999875
No 125
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=88.40 E-value=0.12 Score=46.90 Aligned_cols=17 Identities=35% Similarity=0.579 Sum_probs=15.2
Q ss_pred EEEEEecCCCCcccccc
Q 008523 336 VALFFGLSGTGKTTLST 352 (563)
Q Consensus 336 valfFGLSGTGKTTLsa 352 (563)
.++|.|.+||||||++.
T Consensus 2 ~I~l~G~~GsGKsT~~~ 18 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQ 18 (197)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999999876
No 126
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=88.26 E-value=0.12 Score=47.97 Aligned_cols=17 Identities=35% Similarity=0.612 Sum_probs=15.0
Q ss_pred EEEEEecCCCCcccccc
Q 008523 336 VALFFGLSGTGKTTLST 352 (563)
Q Consensus 336 valfFGLSGTGKTTLsa 352 (563)
.++|.|++||||||++.
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAE 18 (216)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999999876
No 127
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=88.26 E-value=0.12 Score=48.96 Aligned_cols=18 Identities=44% Similarity=0.529 Sum_probs=15.5
Q ss_pred CEEEEEecCCCCcccccc
Q 008523 335 DVALFFGLSGTGKTTLST 352 (563)
Q Consensus 335 ~valfFGLSGTGKTTLsa 352 (563)
+.+++.|+||+|||||..
T Consensus 2 RpIVi~GPSG~GK~Tl~~ 19 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLK 19 (186)
T ss_dssp CCEEEECCTTSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 458999999999999764
No 128
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=88.18 E-value=0.12 Score=49.38 Aligned_cols=16 Identities=44% Similarity=0.717 Sum_probs=14.9
Q ss_pred EEEEecCCCCcccccc
Q 008523 337 ALFFGLSGTGKTTLST 352 (563)
Q Consensus 337 alfFGLSGTGKTTLsa 352 (563)
++|+|++|||||||..
T Consensus 52 ~ll~G~~G~GKTtl~~ 67 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLAR 67 (254)
T ss_dssp EEEECCTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 9999999999999875
No 129
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=88.15 E-value=0.12 Score=45.60 Aligned_cols=19 Identities=26% Similarity=0.531 Sum_probs=16.4
Q ss_pred CCEEEEEecCCCCcccccc
Q 008523 334 GDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 334 G~valfFGLSGTGKTTLsa 352 (563)
...++|.|++|||||||+.
T Consensus 43 ~~~vll~G~~G~GKT~la~ 61 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVE 61 (187)
T ss_dssp SCEEEEESCGGGCHHHHHH
T ss_pred CCceEEECCCCCCHHHHHH
Confidence 3568999999999999875
No 130
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=88.15 E-value=0.13 Score=46.49 Aligned_cols=17 Identities=41% Similarity=0.800 Sum_probs=15.2
Q ss_pred EEEEEecCCCCcccccc
Q 008523 336 VALFFGLSGTGKTTLST 352 (563)
Q Consensus 336 valfFGLSGTGKTTLsa 352 (563)
.+++.|++||||||++.
T Consensus 6 ~i~i~G~~GsGKsTla~ 22 (175)
T 1via_A 6 NIVFIGFMGSGKSTLAR 22 (175)
T ss_dssp CEEEECCTTSCHHHHHH
T ss_pred EEEEEcCCCCCHHHHHH
Confidence 58899999999999875
No 131
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=88.09 E-value=0.14 Score=46.15 Aligned_cols=17 Identities=41% Similarity=0.692 Sum_probs=15.2
Q ss_pred EEEEEecCCCCcccccc
Q 008523 336 VALFFGLSGTGKTTLST 352 (563)
Q Consensus 336 valfFGLSGTGKTTLsa 352 (563)
.++|.|.+||||||++.
T Consensus 2 ~I~l~G~~GsGKsT~~~ 18 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAK 18 (195)
T ss_dssp EEEEECSTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 57899999999999876
No 132
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=87.99 E-value=0.17 Score=46.18 Aligned_cols=21 Identities=29% Similarity=0.360 Sum_probs=18.4
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
..|..+++.|.+|+|||||..
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~ 44 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALN 44 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHH
Confidence 457789999999999999765
No 133
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=87.97 E-value=0.12 Score=52.66 Aligned_cols=21 Identities=33% Similarity=0.526 Sum_probs=19.1
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
+.|..+++.|+||+|||||..
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ 98 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILR 98 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHH
T ss_pred cCCCEEEEECCCCchHHHHHH
Confidence 678999999999999999765
No 134
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=87.88 E-value=0.14 Score=52.65 Aligned_cols=21 Identities=38% Similarity=0.631 Sum_probs=18.7
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
+.|.+++|.|+||+|||||..
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~ 147 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIA 147 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHH
Confidence 458899999999999999765
No 135
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=87.82 E-value=0.14 Score=47.77 Aligned_cols=17 Identities=35% Similarity=0.591 Sum_probs=15.0
Q ss_pred EEEEEecCCCCcccccc
Q 008523 336 VALFFGLSGTGKTTLST 352 (563)
Q Consensus 336 valfFGLSGTGKTTLsa 352 (563)
.++|.|++||||||++.
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGE 18 (216)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37899999999999875
No 136
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=87.82 E-value=0.17 Score=49.41 Aligned_cols=18 Identities=28% Similarity=0.630 Sum_probs=16.5
Q ss_pred CEEEEEecCCCCcccccc
Q 008523 335 DVALFFGLSGTGKTTLST 352 (563)
Q Consensus 335 ~valfFGLSGTGKTTLsa 352 (563)
..+++.|+||+|||||..
T Consensus 25 e~~~liG~nGsGKSTLl~ 42 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLE 42 (240)
T ss_dssp SEEEEECCTTSSHHHHHH
T ss_pred EEEEEECCCCCCHHHHHH
Confidence 799999999999999765
No 137
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=87.77 E-value=0.19 Score=50.32 Aligned_cols=30 Identities=30% Similarity=0.587 Sum_probs=23.3
Q ss_pred eecccceecC---------CCCEEEEEecCCCCcccccc
Q 008523 323 SLHSGCNMGK---------DGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 323 ~mH~sanvg~---------~G~valfFGLSGTGKTTLsa 352 (563)
-+-+||+.+. .|..+++.|+||+|||||..
T Consensus 149 ~~~~SAktg~gv~~lf~~l~geiv~l~G~sG~GKSTll~ 187 (301)
T 1u0l_A 149 IVKTSAKTGMGIEELKEYLKGKISTMAGLSGVGKSSLLN 187 (301)
T ss_dssp EEECCTTTCTTHHHHHHHHSSSEEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHhcCCeEEEECCCCCcHHHHHH
Confidence 3456876543 37899999999999999765
No 138
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=87.71 E-value=0.17 Score=49.47 Aligned_cols=21 Identities=29% Similarity=0.471 Sum_probs=18.9
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
..|.++++.|.+|+|||||+.
T Consensus 28 ~~G~i~~i~G~~GsGKTtl~~ 48 (279)
T 1nlf_A 28 VAGTVGALVSPGGAGKSMLAL 48 (279)
T ss_dssp ETTSEEEEEESTTSSHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHH
Confidence 468999999999999999865
No 139
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=87.64 E-value=0.14 Score=45.59 Aligned_cols=18 Identities=28% Similarity=0.506 Sum_probs=15.7
Q ss_pred CEEEEEecCCCCcccccc
Q 008523 335 DVALFFGLSGTGKTTLST 352 (563)
Q Consensus 335 ~valfFGLSGTGKTTLsa 352 (563)
..++|.|++||||||++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~ 20 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGR 20 (173)
T ss_dssp CCEEEESCTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 358999999999999875
No 140
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=87.56 E-value=0.14 Score=49.06 Aligned_cols=44 Identities=32% Similarity=0.482 Sum_probs=25.7
Q ss_pred hhHHHHHHHHHHhcccCceeeecccceec-CCCCEEEEEecCCCCcccccc
Q 008523 303 EMKKGLFSVMHYLMPKRQILSLHSGCNMG-KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 303 EiKK~iltl~n~~l~~~G~L~mH~sanvg-~~G~valfFGLSGTGKTTLsa 352 (563)
+.|+.+..+..++...+- +. +.+ .-...++|.|++|||||||+.
T Consensus 19 ~~~~~l~~~~~~~~~~~~-~~-----~~~~~~~~~vll~G~~GtGKT~la~ 63 (257)
T 1lv7_A 19 EAKEEVAELVEYLREPSR-FQ-----KLGGKIPKGVLMVGPPGTGKTLLAK 63 (257)
T ss_dssp HHHHHTHHHHHHHHCGGG-C----------CCCCEEEEECCTTSCHHHHHH
T ss_pred HHHHHHHHHHHHHhCHHH-HH-----HcCCCCCCeEEEECcCCCCHHHHHH
Confidence 466666666655433211 10 111 112359999999999999875
No 141
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=87.53 E-value=0.16 Score=46.99 Aligned_cols=17 Identities=35% Similarity=0.516 Sum_probs=15.1
Q ss_pred EEEEEecCCCCcccccc
Q 008523 336 VALFFGLSGTGKTTLST 352 (563)
Q Consensus 336 valfFGLSGTGKTTLsa 352 (563)
.+++.|.+||||||++.
T Consensus 4 ~i~l~G~~GsGKST~~~ 20 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIAN 20 (206)
T ss_dssp EEEEECSTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58899999999999765
No 142
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=87.41 E-value=0.16 Score=45.11 Aligned_cols=17 Identities=24% Similarity=0.479 Sum_probs=15.2
Q ss_pred EEEEEecCCCCcccccc
Q 008523 336 VALFFGLSGTGKTTLST 352 (563)
Q Consensus 336 valfFGLSGTGKTTLsa 352 (563)
.++|.|.+||||||++.
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGS 18 (168)
T ss_dssp EEEEESCTTSCHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 47899999999999876
No 143
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=87.39 E-value=0.17 Score=50.26 Aligned_cols=20 Identities=40% Similarity=0.669 Sum_probs=17.5
Q ss_pred CCCEEEEEecCCCCcccccc
Q 008523 333 DGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 333 ~G~valfFGLSGTGKTTLsa 352 (563)
.+..++|+|++|||||||+.
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ 67 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAK 67 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHH
T ss_pred CCceEEEECCCCcCHHHHHH
Confidence 45789999999999999875
No 144
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=87.38 E-value=0.18 Score=47.19 Aligned_cols=20 Identities=25% Similarity=0.403 Sum_probs=17.3
Q ss_pred CCCEEEEEecCCCCcccccc
Q 008523 333 DGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 333 ~G~valfFGLSGTGKTTLsa 352 (563)
.+..++|.|++||||||++.
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~ 22 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAP 22 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 35679999999999999876
No 145
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=87.31 E-value=0.18 Score=46.32 Aligned_cols=18 Identities=33% Similarity=0.355 Sum_probs=16.3
Q ss_pred CEEEEEecCCCCcccccc
Q 008523 335 DVALFFGLSGTGKTTLST 352 (563)
Q Consensus 335 ~valfFGLSGTGKTTLsa 352 (563)
..++|+|++|||||||+.
T Consensus 55 ~~~~l~G~~GtGKT~la~ 72 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLA 72 (202)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 679999999999999875
No 146
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=87.27 E-value=0.22 Score=48.69 Aligned_cols=21 Identities=38% Similarity=0.379 Sum_probs=17.8
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
+.+..++|+|++|||||+|+.
T Consensus 65 ~~~~~vll~G~~GtGKT~la~ 85 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVAL 85 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHH
Confidence 345679999999999999874
No 147
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=87.21 E-value=0.17 Score=49.29 Aligned_cols=20 Identities=40% Similarity=0.609 Sum_probs=17.4
Q ss_pred CCCEEEEEecCCCCcccccc
Q 008523 333 DGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 333 ~G~valfFGLSGTGKTTLsa 352 (563)
.+..++|+|++|||||||+.
T Consensus 53 ~~~~vll~Gp~GtGKT~la~ 72 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLAR 72 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHH
Confidence 45689999999999999875
No 148
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=87.16 E-value=0.18 Score=46.31 Aligned_cols=19 Identities=32% Similarity=0.410 Sum_probs=16.6
Q ss_pred CCEEEEEecCCCCcccccc
Q 008523 334 GDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 334 G~valfFGLSGTGKTTLsa 352 (563)
...++|.|.+||||||++.
T Consensus 15 ~~~I~l~G~~GsGKsT~~~ 33 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCE 33 (203)
T ss_dssp CEEEEEECSTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4579999999999999874
No 149
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=87.08 E-value=0.18 Score=47.39 Aligned_cols=19 Identities=21% Similarity=0.198 Sum_probs=16.3
Q ss_pred CCEEEEEecCCCCcccccc
Q 008523 334 GDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 334 G~valfFGLSGTGKTTLsa 352 (563)
+..++|.|++||||||++.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~ 23 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCE 23 (222)
T ss_dssp SCCEEEEESTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3468999999999999775
No 150
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=87.06 E-value=0.2 Score=47.29 Aligned_cols=19 Identities=37% Similarity=0.475 Sum_probs=16.8
Q ss_pred CCEEEEEecCCCCcccccc
Q 008523 334 GDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 334 G~valfFGLSGTGKTTLsa 352 (563)
+..++|.|++||||||++.
T Consensus 7 ~~~I~l~G~~GsGKsT~a~ 25 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSS 25 (227)
T ss_dssp CCEEEEEECTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4679999999999999875
No 151
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=86.92 E-value=0.16 Score=50.21 Aligned_cols=19 Identities=37% Similarity=0.700 Sum_probs=17.2
Q ss_pred CCEEEEEecCCCCcccccc
Q 008523 334 GDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 334 G~valfFGLSGTGKTTLsa 352 (563)
|..+++.|+|||||||++.
T Consensus 48 g~~i~l~G~~GsGKSTl~~ 66 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGK 66 (250)
T ss_dssp TCCEEEECSTTSCHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 6789999999999999765
No 152
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=86.91 E-value=0.17 Score=52.81 Aligned_cols=46 Identities=24% Similarity=0.309 Sum_probs=28.3
Q ss_pred hhHHHHHHHHHHhcc-cCceeeeccccee-cCCCCEEEEEecCCCCcccccc
Q 008523 303 EMKKGLFSVMHYLMP-KRQILSLHSGCNM-GKDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 303 EiKK~iltl~n~~l~-~~G~L~mH~sanv-g~~G~valfFGLSGTGKTTLsa 352 (563)
++++.+...+--++. ....-+ .+. ...|.++++.|++|+|||||..
T Consensus 128 ~~~~~l~~~l~~~l~~~~~~~~----l~l~~~~g~vi~lvG~nGsGKTTll~ 175 (359)
T 2og2_A 128 EIKDALKESVLEMLAKKNSKTE----LQLGFRKPAVIMIVGVNGGGKTTSLG 175 (359)
T ss_dssp HHHHHHHHHHHHHHCCC---CS----CCCCSSSSEEEEEECCTTSCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcccCCC----cceecCCCeEEEEEcCCCChHHHHHH
Confidence 466666665544443 221001 122 2458899999999999999776
No 153
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=86.89 E-value=0.22 Score=53.13 Aligned_cols=20 Identities=35% Similarity=0.436 Sum_probs=17.6
Q ss_pred CCCEEEEEecCCCCcccccc
Q 008523 333 DGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 333 ~G~valfFGLSGTGKTTLsa 352 (563)
.|..++++|+||||||||..
T Consensus 156 ~Gq~~~IvG~sGsGKSTLl~ 175 (438)
T 2dpy_A 156 RGQRMGLFAGSGVGKSVLLG 175 (438)
T ss_dssp TTCEEEEEECTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 57789999999999999764
No 154
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=86.87 E-value=0.2 Score=46.91 Aligned_cols=21 Identities=43% Similarity=0.597 Sum_probs=18.4
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
+.|..+++.|.+|+|||||+.
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~ 41 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQ 41 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHH
Confidence 457899999999999999865
No 155
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=86.86 E-value=0.19 Score=45.03 Aligned_cols=18 Identities=33% Similarity=0.571 Sum_probs=16.1
Q ss_pred CEEEEEecCCCCcccccc
Q 008523 335 DVALFFGLSGTGKTTLST 352 (563)
Q Consensus 335 ~valfFGLSGTGKTTLsa 352 (563)
..++|.|.+||||||++.
T Consensus 7 ~~I~l~G~~GsGKsT~~~ 24 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCA 24 (194)
T ss_dssp EEEEEEESTTSSHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 479999999999999775
No 156
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=86.81 E-value=0.2 Score=46.07 Aligned_cols=17 Identities=29% Similarity=0.339 Sum_probs=15.3
Q ss_pred EEEEEecCCCCcccccc
Q 008523 336 VALFFGLSGTGKTTLST 352 (563)
Q Consensus 336 valfFGLSGTGKTTLsa 352 (563)
.+++.|.+||||||++.
T Consensus 3 ~i~i~G~~GsGKSTl~~ 19 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQ 19 (204)
T ss_dssp EEEEEECTTSSHHHHHH
T ss_pred EEEEECCCCcCHHHHHH
Confidence 58899999999999775
No 157
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=86.76 E-value=0.19 Score=48.35 Aligned_cols=20 Identities=35% Similarity=0.436 Sum_probs=17.9
Q ss_pred CCCEEEEEecCCCCcccccc
Q 008523 333 DGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 333 ~G~valfFGLSGTGKTTLsa 352 (563)
.|..++|.|++|+||||++.
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~ 44 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVIN 44 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHH
Confidence 57789999999999999776
No 158
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=86.72 E-value=0.17 Score=45.75 Aligned_cols=17 Identities=41% Similarity=0.794 Sum_probs=15.3
Q ss_pred EEEEEecCCCCcccccc
Q 008523 336 VALFFGLSGTGKTTLST 352 (563)
Q Consensus 336 valfFGLSGTGKTTLsa 352 (563)
.+++.|++||||||++.
T Consensus 4 ~I~l~G~~GsGKsT~a~ 20 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGR 20 (184)
T ss_dssp SEEEECSTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 58999999999999875
No 159
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=86.68 E-value=0.21 Score=48.25 Aligned_cols=20 Identities=40% Similarity=0.587 Sum_probs=17.1
Q ss_pred CCCEEEEEecCCCCcccccc
Q 008523 333 DGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 333 ~G~valfFGLSGTGKTTLsa 352 (563)
.+..++|.|++|||||||+.
T Consensus 50 ~~~~~ll~G~~GtGKT~la~ 69 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAK 69 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHH
Confidence 34579999999999999875
No 160
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=86.48 E-value=0.17 Score=50.08 Aligned_cols=16 Identities=44% Similarity=0.642 Sum_probs=14.8
Q ss_pred EEEEecCCCCcccccc
Q 008523 337 ALFFGLSGTGKTTLST 352 (563)
Q Consensus 337 alfFGLSGTGKTTLsa 352 (563)
++++|++|||||||..
T Consensus 47 vlL~Gp~GtGKTtLak 62 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAK 62 (274)
T ss_dssp EEEESSTTSCHHHHHH
T ss_pred EEEECCCCCcHHHHHH
Confidence 9999999999999865
No 161
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=86.44 E-value=0.24 Score=48.69 Aligned_cols=21 Identities=33% Similarity=0.544 Sum_probs=19.0
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
..|..+++.|.+|+|||||..
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~ 53 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVR 53 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHH
Confidence 678999999999999999865
No 162
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=86.27 E-value=0.18 Score=49.12 Aligned_cols=16 Identities=44% Similarity=0.717 Sum_probs=14.8
Q ss_pred EEEEecCCCCcccccc
Q 008523 337 ALFFGLSGTGKTTLST 352 (563)
Q Consensus 337 alfFGLSGTGKTTLsa 352 (563)
++|+|++|||||||..
T Consensus 76 vll~Gp~GtGKTtl~~ 91 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLAR 91 (278)
T ss_dssp EEEECCTTSSHHHHHH
T ss_pred EEEECCCcChHHHHHH
Confidence 9999999999999865
No 163
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=86.14 E-value=0.24 Score=51.13 Aligned_cols=20 Identities=40% Similarity=0.401 Sum_probs=17.6
Q ss_pred CCCEEEEEecCCCCcccccc
Q 008523 333 DGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 333 ~G~valfFGLSGTGKTTLsa 352 (563)
.|..++++|++|+|||||..
T Consensus 70 ~Gq~~gIiG~nGaGKTTLl~ 89 (347)
T 2obl_A 70 IGQRIGIFAGSGVGKSTLLG 89 (347)
T ss_dssp TTCEEEEEECTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 47789999999999999754
No 164
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=86.14 E-value=0.24 Score=44.52 Aligned_cols=21 Identities=24% Similarity=0.382 Sum_probs=16.9
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
+.|..+++.|.+|+|||||..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~ 22 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLN 22 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 346679999999999999765
No 165
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=86.05 E-value=0.22 Score=48.58 Aligned_cols=19 Identities=37% Similarity=0.558 Sum_probs=16.6
Q ss_pred CCEEEEEecCCCCcccccc
Q 008523 334 GDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 334 G~valfFGLSGTGKTTLsa 352 (563)
+..++|.|++||||||++.
T Consensus 4 ~~lIvl~G~pGSGKSTla~ 22 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSK 22 (260)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHH
Confidence 3579999999999999876
No 166
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=86.01 E-value=0.26 Score=43.29 Aligned_cols=22 Identities=32% Similarity=0.309 Sum_probs=18.3
Q ss_pred cCCCCEEEEEecCCCCcccccc
Q 008523 331 GKDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 331 g~~G~valfFGLSGTGKTTLsa 352 (563)
.+....++++|.+|+|||||..
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~ 26 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLD 26 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHH
Confidence 3455689999999999999765
No 167
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=85.98 E-value=0.29 Score=44.66 Aligned_cols=17 Identities=35% Similarity=0.585 Sum_probs=15.3
Q ss_pred EEEEEecCCCCcccccc
Q 008523 336 VALFFGLSGTGKTTLST 352 (563)
Q Consensus 336 valfFGLSGTGKTTLsa 352 (563)
.+++.|++|+|||||..
T Consensus 31 kv~lvG~~g~GKSTLl~ 47 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLS 47 (191)
T ss_dssp EEEEEECTTSSHHHHHH
T ss_pred EEEEECcCCCCHHHHHH
Confidence 58999999999999865
No 168
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=85.97 E-value=0.23 Score=46.37 Aligned_cols=19 Identities=26% Similarity=0.417 Sum_probs=16.5
Q ss_pred CCEEEEEecCCCCcccccc
Q 008523 334 GDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 334 G~valfFGLSGTGKTTLsa 352 (563)
+..+++.|.+||||||++.
T Consensus 4 ~~~I~i~G~~GSGKST~~~ 22 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVAN 22 (218)
T ss_dssp CEEEEEECCTTSCHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 4579999999999999765
No 169
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=85.96 E-value=0.19 Score=50.81 Aligned_cols=18 Identities=50% Similarity=0.669 Sum_probs=16.0
Q ss_pred CEEEEEecCCCCcccccc
Q 008523 335 DVALFFGLSGTGKTTLST 352 (563)
Q Consensus 335 ~valfFGLSGTGKTTLsa 352 (563)
..++|+|++|||||||+.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~ 69 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAH 69 (334)
T ss_dssp CCEEEESSTTSSHHHHHH
T ss_pred CeEEEECCCCCcHHHHHH
Confidence 468999999999999875
No 170
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=85.88 E-value=0.22 Score=50.00 Aligned_cols=20 Identities=30% Similarity=0.313 Sum_probs=17.5
Q ss_pred CCCEEEEEecCCCCcccccc
Q 008523 333 DGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 333 ~G~valfFGLSGTGKTTLsa 352 (563)
.+.++.+.|.||+|||||+.
T Consensus 30 ~~~ii~I~G~sGsGKSTla~ 49 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSI 49 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 45689999999999999875
No 171
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=85.86 E-value=0.25 Score=44.95 Aligned_cols=19 Identities=26% Similarity=0.326 Sum_probs=16.5
Q ss_pred CCEEEEEecCCCCcccccc
Q 008523 334 GDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 334 G~valfFGLSGTGKTTLsa 352 (563)
..++++.|.+||||||++.
T Consensus 8 ~~~I~i~G~~GsGKST~~~ 26 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAA 26 (203)
T ss_dssp CEEEEEEECTTSCHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 3579999999999999875
No 172
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=85.80 E-value=0.22 Score=44.07 Aligned_cols=20 Identities=25% Similarity=0.426 Sum_probs=16.9
Q ss_pred CCCEEEEEecCCCCcccccc
Q 008523 333 DGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 333 ~G~valfFGLSGTGKTTLsa 352 (563)
.+..++|+|.+|||||+++.
T Consensus 23 ~~~~vll~G~~GtGKt~lA~ 42 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGAR 42 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHH
Confidence 34569999999999999875
No 173
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=85.67 E-value=0.25 Score=49.49 Aligned_cols=19 Identities=42% Similarity=0.700 Sum_probs=16.9
Q ss_pred CCEEEEEecCCCCcccccc
Q 008523 334 GDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 334 G~valfFGLSGTGKTTLsa 352 (563)
+..++|.|++|||||+|+.
T Consensus 70 ~~~vLl~GppGtGKT~la~ 88 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAM 88 (368)
T ss_dssp TCEEEEEESTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 4689999999999999875
No 174
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=85.58 E-value=0.25 Score=48.99 Aligned_cols=17 Identities=41% Similarity=0.585 Sum_probs=15.1
Q ss_pred EEEEEecCCCCcccccc
Q 008523 336 VALFFGLSGTGKTTLST 352 (563)
Q Consensus 336 valfFGLSGTGKTTLsa 352 (563)
++++.|.||+|||||..
T Consensus 4 ~v~lvG~nGaGKSTLln 20 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVN 20 (270)
T ss_dssp EEEEEESSSSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58899999999999765
No 175
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=85.52 E-value=0.14 Score=47.66 Aligned_cols=18 Identities=44% Similarity=0.473 Sum_probs=15.8
Q ss_pred CEEEEEecCCCCcccccc
Q 008523 335 DVALFFGLSGTGKTTLST 352 (563)
Q Consensus 335 ~valfFGLSGTGKTTLsa 352 (563)
.++++.|.||+|||||..
T Consensus 3 ~~v~IvG~SGsGKSTL~~ 20 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLIT 20 (171)
T ss_dssp CEEEEEESCHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 368899999999999775
No 176
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=85.41 E-value=0.25 Score=47.66 Aligned_cols=19 Identities=37% Similarity=0.566 Sum_probs=16.9
Q ss_pred CCEEEEEecCCCCcccccc
Q 008523 334 GDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 334 G~valfFGLSGTGKTTLsa 352 (563)
+..++|+|++|+||||++.
T Consensus 29 ~~~I~l~G~~GsGKsT~a~ 47 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSL 47 (243)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4579999999999999876
No 177
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=85.36 E-value=0.27 Score=44.31 Aligned_cols=17 Identities=24% Similarity=0.589 Sum_probs=15.2
Q ss_pred EEEEEecCCCCcccccc
Q 008523 336 VALFFGLSGTGKTTLST 352 (563)
Q Consensus 336 valfFGLSGTGKTTLsa 352 (563)
..+|.|.+|+|||||..
T Consensus 28 ~~~i~G~NGsGKStll~ 44 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGD 44 (182)
T ss_dssp EEEEEECTTSSHHHHHH
T ss_pred cEEEECCCCCCHHHHHH
Confidence 89999999999999643
No 178
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=85.27 E-value=0.24 Score=51.14 Aligned_cols=21 Identities=38% Similarity=0.469 Sum_probs=18.2
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
+.|..+++.|+||+|||||..
T Consensus 173 ~~G~~i~ivG~sGsGKSTll~ 193 (361)
T 2gza_A 173 QLERVIVVAGETGSGKTTLMK 193 (361)
T ss_dssp HTTCCEEEEESSSSCHHHHHH
T ss_pred hcCCEEEEECCCCCCHHHHHH
Confidence 457789999999999999765
No 179
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=85.11 E-value=0.24 Score=48.43 Aligned_cols=17 Identities=35% Similarity=0.642 Sum_probs=15.5
Q ss_pred EEEEEecCCCCcccccc
Q 008523 336 VALFFGLSGTGKTTLST 352 (563)
Q Consensus 336 valfFGLSGTGKTTLsa 352 (563)
.++|.|+|||||||++.
T Consensus 4 ~I~l~G~~GsGKST~a~ 20 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAR 20 (301)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 68999999999999876
No 180
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=85.10 E-value=0.28 Score=49.39 Aligned_cols=21 Identities=33% Similarity=0.529 Sum_probs=18.5
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
..|.+++|.|++|+||||++.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~ 123 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLA 123 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHH
Confidence 457899999999999999776
No 181
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=85.07 E-value=0.24 Score=43.76 Aligned_cols=19 Identities=16% Similarity=0.225 Sum_probs=16.3
Q ss_pred CCEEEEEecCCCCcccccc
Q 008523 334 GDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 334 G~valfFGLSGTGKTTLsa 352 (563)
+..++|.|.+|||||+++.
T Consensus 27 ~~~vll~G~~GtGKt~lA~ 45 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVAR 45 (143)
T ss_dssp SSCEEEEEETTCCHHHHHG
T ss_pred CCcEEEECCCCccHHHHHH
Confidence 3469999999999999875
No 182
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=84.99 E-value=0.19 Score=55.30 Aligned_cols=21 Identities=48% Similarity=0.814 Sum_probs=18.5
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
..|.+++|.|+||||||||..
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar 387 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLAR 387 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHH
T ss_pred ccceEEEEECCCCChHHHHHH
Confidence 467899999999999999765
No 183
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=84.83 E-value=0.29 Score=44.41 Aligned_cols=18 Identities=39% Similarity=0.661 Sum_probs=16.0
Q ss_pred CEEEEEecCCCCcccccc
Q 008523 335 DVALFFGLSGTGKTTLST 352 (563)
Q Consensus 335 ~valfFGLSGTGKTTLsa 352 (563)
..++|.|++|+|||||..
T Consensus 46 ~~~ll~G~~G~GKT~l~~ 63 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIAR 63 (250)
T ss_dssp SEEEEECSTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 478999999999999875
No 184
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=84.64 E-value=0.27 Score=43.81 Aligned_cols=18 Identities=28% Similarity=0.661 Sum_probs=16.0
Q ss_pred CEEEEEecCCCCcccccc
Q 008523 335 DVALFFGLSGTGKTTLST 352 (563)
Q Consensus 335 ~valfFGLSGTGKTTLsa 352 (563)
..+++.|.+||||||++.
T Consensus 8 ~~i~l~G~~GsGKSTva~ 25 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQ 25 (168)
T ss_dssp CEEEEESCTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 479999999999999776
No 185
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=84.59 E-value=0.22 Score=50.87 Aligned_cols=19 Identities=21% Similarity=0.387 Sum_probs=17.2
Q ss_pred CCEEEEEecCCCCcccccc
Q 008523 334 GDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 334 G~valfFGLSGTGKTTLsa 352 (563)
|..+++.|.||||||||..
T Consensus 170 g~k~~IvG~nGsGKSTLlk 188 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVN 188 (365)
T ss_dssp CEEEEEECCTTSHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHH
Confidence 6789999999999999875
No 186
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=84.57 E-value=0.29 Score=53.44 Aligned_cols=21 Identities=43% Similarity=0.502 Sum_probs=18.7
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
..|.+++|.|+||+|||||..
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~ 311 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIG 311 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHH
Confidence 468899999999999999765
No 187
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=84.55 E-value=0.31 Score=48.98 Aligned_cols=20 Identities=30% Similarity=0.650 Sum_probs=17.9
Q ss_pred CCCEEEEEecCCCCcccccc
Q 008523 333 DGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 333 ~G~valfFGLSGTGKTTLsa 352 (563)
.|.+++|.|.||+|||||..
T Consensus 164 ~G~i~~l~G~sG~GKSTLln 183 (302)
T 2yv5_A 164 EGFICILAGPSGVGKSSILS 183 (302)
T ss_dssp TTCEEEEECSTTSSHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHH
Confidence 47899999999999999765
No 188
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=84.52 E-value=0.35 Score=44.47 Aligned_cols=19 Identities=32% Similarity=0.398 Sum_probs=16.5
Q ss_pred CCEEEEEecCCCCcccccc
Q 008523 334 GDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 334 G~valfFGLSGTGKTTLsa 352 (563)
-..++|.|++|+|||||..
T Consensus 12 ~~~i~~~G~~g~GKTsl~~ 30 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLT 30 (218)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 3579999999999999765
No 189
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=84.43 E-value=0.35 Score=52.98 Aligned_cols=21 Identities=38% Similarity=0.659 Sum_probs=19.1
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
+.|..+++.|+||+|||||..
T Consensus 368 ~~G~~~~ivG~sGsGKSTLl~ 388 (595)
T 2yl4_A 368 PSGSVTALVGPSGSGKSTVLS 388 (595)
T ss_dssp CTTCEEEEECCTTSSSTHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 678999999999999999765
No 190
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=84.40 E-value=0.26 Score=44.34 Aligned_cols=17 Identities=47% Similarity=0.606 Sum_probs=15.2
Q ss_pred EEEEEecCCCCcccccc
Q 008523 336 VALFFGLSGTGKTTLST 352 (563)
Q Consensus 336 valfFGLSGTGKTTLsa 352 (563)
.++|.|++|||||||+.
T Consensus 40 ~~ll~G~~G~GKT~l~~ 56 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAI 56 (226)
T ss_dssp CEEEECSTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 39999999999999875
No 191
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=84.38 E-value=0.26 Score=47.74 Aligned_cols=18 Identities=33% Similarity=0.403 Sum_probs=16.0
Q ss_pred CEEEEEecCCCCcccccc
Q 008523 335 DVALFFGLSGTGKTTLST 352 (563)
Q Consensus 335 ~valfFGLSGTGKTTLsa 352 (563)
..++|.|++|||||+|+.
T Consensus 65 ~~vLl~G~~GtGKT~la~ 82 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAA 82 (272)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 469999999999999875
No 192
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=84.36 E-value=0.34 Score=52.91 Aligned_cols=21 Identities=33% Similarity=0.653 Sum_probs=19.0
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
+.|+.+++.|+||+|||||..
T Consensus 367 ~~G~~~~ivG~sGsGKSTLl~ 387 (582)
T 3b60_A 367 PAGKTVALVGRSGSGKSTIAS 387 (582)
T ss_dssp CTTCEEEEEECTTSSHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 678999999999999999765
No 193
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=84.36 E-value=0.28 Score=45.87 Aligned_cols=17 Identities=24% Similarity=0.350 Sum_probs=15.0
Q ss_pred EEEEEecCCCCcccccc
Q 008523 336 VALFFGLSGTGKTTLST 352 (563)
Q Consensus 336 valfFGLSGTGKTTLsa 352 (563)
.++|.|.+||||||++.
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQ 18 (214)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999999775
No 194
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=84.32 E-value=0.22 Score=54.41 Aligned_cols=21 Identities=19% Similarity=0.109 Sum_probs=18.6
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
+.|.+++|.|+|||||||++.
T Consensus 393 ~~~~~I~l~GlsGsGKSTIa~ 413 (511)
T 1g8f_A 393 KQGFSIVLGNSLTVSREQLSI 413 (511)
T ss_dssp GCCEEEEECTTCCSCHHHHHH
T ss_pred ccceEEEecccCCCCHHHHHH
Confidence 467799999999999999876
No 195
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=84.25 E-value=0.28 Score=49.88 Aligned_cols=43 Identities=26% Similarity=0.310 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHhcccCceeeeccccee-cCCCCEEEEEecCCCCcccccc
Q 008523 304 MKKGLFSVMHYLMPKRQILSLHSGCNM-GKDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 304 iKK~iltl~n~~l~~~G~L~mH~sanv-g~~G~valfFGLSGTGKTTLsa 352 (563)
+++.+...+.-++.... ++ +. ...+.+++|.|++|+||||++.
T Consensus 79 ~~~~~~~~l~~~l~~~~--~~----~~~~~~~~vi~ivG~~GsGKTTl~~ 122 (306)
T 1vma_A 79 ALESLKEIILEILNFDT--KL----NVPPEPPFVIMVVGVNGTGKTTSCG 122 (306)
T ss_dssp HHHHHHHHHHHHTCSCC--CC----CCCSSSCEEEEEECCTTSSHHHHHH
T ss_pred HHHHHHHHHHHHhCCCC--CC----cccCCCCeEEEEEcCCCChHHHHHH
Confidence 66766666655554322 22 12 2457899999999999999776
No 196
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=84.20 E-value=0.29 Score=50.30 Aligned_cols=21 Identities=33% Similarity=0.542 Sum_probs=18.6
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
+.|.++.++|++|||||||..
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~ 149 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAH 149 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHH
Confidence 467899999999999999865
No 197
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=84.03 E-value=0.33 Score=51.25 Aligned_cols=21 Identities=33% Similarity=0.569 Sum_probs=18.5
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
+.|..++++|+||+|||||..
T Consensus 176 ~~Gei~~I~G~sGsGKTTLl~ 196 (400)
T 3lda_A 176 ETGSITELFGEFRTGKSQLCH 196 (400)
T ss_dssp ETTSEEEEEESTTSSHHHHHH
T ss_pred CCCcEEEEEcCCCCChHHHHH
Confidence 457899999999999999765
No 198
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=83.99 E-value=0.32 Score=50.45 Aligned_cols=21 Identities=29% Similarity=0.444 Sum_probs=18.1
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
+.|..+++.|+||+|||||..
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~ 154 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIA 154 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 456789999999999999765
No 199
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=83.97 E-value=0.29 Score=49.94 Aligned_cols=21 Identities=33% Similarity=0.442 Sum_probs=17.7
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
+.|..+++.|+||+|||||..
T Consensus 169 ~~g~~v~i~G~~GsGKTTll~ 189 (330)
T 2pt7_A 169 AIGKNVIVCGGTGSGKTTYIK 189 (330)
T ss_dssp HHTCCEEEEESTTSCHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 346789999999999999765
No 200
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=83.96 E-value=0.34 Score=48.54 Aligned_cols=19 Identities=26% Similarity=0.391 Sum_probs=14.0
Q ss_pred CCEEEEEecCCCCcccccc
Q 008523 334 GDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 334 G~valfFGLSGTGKTTLsa 352 (563)
..++++.|.|||||||++.
T Consensus 5 ~~iIgItG~sGSGKSTva~ 23 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKH 23 (290)
T ss_dssp SCEEEEESCC---CCTHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 4579999999999999886
No 201
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=83.95 E-value=0.29 Score=50.23 Aligned_cols=18 Identities=28% Similarity=0.230 Sum_probs=16.0
Q ss_pred CEEEEEecCCCCcccccc
Q 008523 335 DVALFFGLSGTGKTTLST 352 (563)
Q Consensus 335 ~valfFGLSGTGKTTLsa 352 (563)
.++.+.|+||||||||+.
T Consensus 93 ~iigI~GpsGSGKSTl~~ 110 (321)
T 3tqc_A 93 YIIGIAGSVAVGKSTTSR 110 (321)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred EEEEEECCCCCCHHHHHH
Confidence 479999999999999875
No 202
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=83.85 E-value=0.35 Score=45.43 Aligned_cols=19 Identities=26% Similarity=0.443 Sum_probs=16.4
Q ss_pred CCEEEEEecCCCCcccccc
Q 008523 334 GDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 334 G~valfFGLSGTGKTTLsa 352 (563)
+..++|.|++||||||++.
T Consensus 5 ~~~I~l~G~~GsGKsT~a~ 23 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCE 23 (217)
T ss_dssp CCEEEEEECTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 3568999999999999765
No 203
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=83.82 E-value=0.28 Score=46.50 Aligned_cols=17 Identities=41% Similarity=0.643 Sum_probs=15.1
Q ss_pred EEEEEecCCCCcccccc
Q 008523 336 VALFFGLSGTGKTTLST 352 (563)
Q Consensus 336 valfFGLSGTGKTTLsa 352 (563)
.++|.|++||||||++.
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGN 18 (223)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999999776
No 204
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=83.79 E-value=0.34 Score=45.21 Aligned_cols=18 Identities=50% Similarity=0.580 Sum_probs=15.9
Q ss_pred CEEEEEecCCCCcccccc
Q 008523 335 DVALFFGLSGTGKTTLST 352 (563)
Q Consensus 335 ~valfFGLSGTGKTTLsa 352 (563)
..++|.|.||+|||||..
T Consensus 7 ~~i~i~G~sGsGKTTl~~ 24 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLK 24 (174)
T ss_dssp CEEEEECCTTSCHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHH
Confidence 478999999999999765
No 205
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=83.76 E-value=0.33 Score=47.02 Aligned_cols=21 Identities=19% Similarity=0.105 Sum_probs=17.8
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
+.+..++|.|++|+||||++.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~ 42 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVN 42 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHH
Confidence 456789999999999999876
No 206
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=83.68 E-value=0.32 Score=45.51 Aligned_cols=18 Identities=39% Similarity=0.458 Sum_probs=15.9
Q ss_pred CEEEEEecCCCCcccccc
Q 008523 335 DVALFFGLSGTGKTTLST 352 (563)
Q Consensus 335 ~valfFGLSGTGKTTLsa 352 (563)
.+++|.|.||+|||||..
T Consensus 5 ~~i~i~G~sGsGKTTl~~ 22 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLME 22 (169)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred EEEEEECCCCCCHHHHHH
Confidence 468999999999999776
No 207
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=83.63 E-value=0.33 Score=48.08 Aligned_cols=20 Identities=35% Similarity=0.687 Sum_probs=17.3
Q ss_pred CCCEEEEEecCCCCcccccc
Q 008523 333 DGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 333 ~G~valfFGLSGTGKTTLsa 352 (563)
.+..+++.|++|||||||..
T Consensus 44 ~~~~vli~G~~G~GKTtl~~ 63 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVK 63 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 45679999999999999875
No 208
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=83.61 E-value=0.33 Score=48.57 Aligned_cols=45 Identities=22% Similarity=0.276 Sum_probs=26.6
Q ss_pred hhHHHHHHHHHHhcccCceeeecccceecCCCCEEEEEecCCCCcccccc
Q 008523 303 EMKKGLFSVMHYLMPKRQILSLHSGCNMGKDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 303 EiKK~iltl~n~~l~~~G~L~mH~sanvg~~G~valfFGLSGTGKTTLsa 352 (563)
+.|+.+..+..+.+.....+. + ...-...++|+|++|||||+|+.
T Consensus 25 ~~~~~l~~~i~~~~~~~~~~~-~----~~~~~~~vLl~GppGtGKT~la~ 69 (322)
T 3eie_A 25 GAKEALKEAVILPVKFPHLFK-G----NRKPTSGILLYGPPGTGKSYLAK 69 (322)
T ss_dssp HHHHHHHHHTHHHHHCGGGCC-T----TCCCCCEEEEECSSSSCHHHHHH
T ss_pred HHHHHHHHHHHHHHhCHHHHh-c----CCCCCCeEEEECCCCCcHHHHHH
Confidence 577776665544322111111 0 11223569999999999999875
No 209
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=83.60 E-value=0.28 Score=48.71 Aligned_cols=19 Identities=37% Similarity=0.531 Sum_probs=16.7
Q ss_pred CCEEEEEecCCCCcccccc
Q 008523 334 GDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 334 G~valfFGLSGTGKTTLsa 352 (563)
+..++|+|++|||||||+.
T Consensus 37 ~~~lll~G~~GtGKT~la~ 55 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQ 55 (324)
T ss_dssp CSSEEEECSSSSSHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 4579999999999999875
No 210
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=83.59 E-value=0.37 Score=52.69 Aligned_cols=21 Identities=43% Similarity=0.803 Sum_probs=19.1
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
+.|..+++.|+||+|||||..
T Consensus 365 ~~G~~~~ivG~sGsGKSTll~ 385 (578)
T 4a82_A 365 EKGETVAFVGMSGGGKSTLIN 385 (578)
T ss_dssp CTTCEEEEECSTTSSHHHHHT
T ss_pred CCCCEEEEECCCCChHHHHHH
Confidence 678999999999999999765
No 211
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=83.42 E-value=0.3 Score=47.31 Aligned_cols=20 Identities=30% Similarity=0.514 Sum_probs=17.0
Q ss_pred CCCEEEEEecCCCCcccccc
Q 008523 333 DGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 333 ~G~valfFGLSGTGKTTLsa 352 (563)
.+..++|.|++|||||+|+.
T Consensus 49 ~~~~vll~G~~GtGKT~la~ 68 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIAR 68 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHH
Confidence 34579999999999999875
No 212
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=83.28 E-value=0.37 Score=52.66 Aligned_cols=21 Identities=33% Similarity=0.656 Sum_probs=19.0
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
+.|+.+++.|+||+|||||..
T Consensus 367 ~~G~~~~ivG~sGsGKSTll~ 387 (582)
T 3b5x_A 367 PQGKTVALVGRSGSGKSTIAN 387 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 678999999999999999765
No 213
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=83.25 E-value=0.39 Score=45.59 Aligned_cols=20 Identities=35% Similarity=0.552 Sum_probs=17.2
Q ss_pred CCCEEEEEecCCCCcccccc
Q 008523 333 DGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 333 ~G~valfFGLSGTGKTTLsa 352 (563)
.+..++|.|.+||||||++.
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~ 34 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAP 34 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 34679999999999999776
No 214
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=83.16 E-value=0.33 Score=47.60 Aligned_cols=18 Identities=39% Similarity=0.464 Sum_probs=16.3
Q ss_pred CEEEEEecCCCCcccccc
Q 008523 335 DVALFFGLSGTGKTTLST 352 (563)
Q Consensus 335 ~valfFGLSGTGKTTLsa 352 (563)
.++++.|+|||||||++.
T Consensus 10 ~~i~i~G~~GsGKsTla~ 27 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSR 27 (233)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 579999999999999876
No 215
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=83.13 E-value=0.38 Score=50.37 Aligned_cols=21 Identities=38% Similarity=0.415 Sum_probs=18.6
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
+.|..+++.|++|||||||+.
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~ 187 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAA 187 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 567899999999999999875
No 216
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=83.05 E-value=0.33 Score=47.34 Aligned_cols=18 Identities=44% Similarity=0.733 Sum_probs=15.9
Q ss_pred CEEEEEecCCCCcccccc
Q 008523 335 DVALFFGLSGTGKTTLST 352 (563)
Q Consensus 335 ~valfFGLSGTGKTTLsa 352 (563)
..++|.|++|||||||+.
T Consensus 48 ~~~ll~G~~GtGKt~la~ 65 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAK 65 (311)
T ss_dssp EEEEEESCSSSSHHHHHH
T ss_pred eEEEEECCCCcCHHHHHH
Confidence 369999999999999875
No 217
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=82.91 E-value=0.35 Score=51.92 Aligned_cols=21 Identities=43% Similarity=0.509 Sum_probs=18.7
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
+.|..+++.|+||||||||..
T Consensus 136 ~~Ge~v~IvGpnGsGKSTLlr 156 (460)
T 2npi_A 136 FEGPRVVIVGGSQTGKTSLSR 156 (460)
T ss_dssp SSCCCEEEEESTTSSHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 478899999999999999765
No 218
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=82.91 E-value=0.39 Score=50.12 Aligned_cols=20 Identities=40% Similarity=0.783 Sum_probs=18.0
Q ss_pred CCCEEEEEecCCCCcccccc
Q 008523 333 DGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 333 ~G~valfFGLSGTGKTTLsa 352 (563)
.|.+++|.|.||+|||||..
T Consensus 214 ~G~~~~lvG~sG~GKSTLln 233 (358)
T 2rcn_A 214 TGRISIFAGQSGVGKSSLLN 233 (358)
T ss_dssp TTSEEEEECCTTSSHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHH
Confidence 47899999999999999865
No 219
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=82.87 E-value=0.44 Score=52.32 Aligned_cols=21 Identities=38% Similarity=0.640 Sum_probs=19.0
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
+.|+.+++.|+||+|||||..
T Consensus 379 ~~G~~~~ivG~sGsGKSTll~ 399 (598)
T 3qf4_B 379 KPGQKVALVGPTGSGKTTIVN 399 (598)
T ss_dssp CTTCEEEEECCTTSSTTHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHH
Confidence 678999999999999999765
No 220
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=82.86 E-value=0.37 Score=53.53 Aligned_cols=20 Identities=40% Similarity=0.574 Sum_probs=18.3
Q ss_pred CCCCEEEEEecCCCCccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLS 351 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLs 351 (563)
+.|..+++.|+||||||||.
T Consensus 346 ~~Ge~vaIiGpnGsGKSTLl 365 (670)
T 3ux8_A 346 PLGTFVAVTGVSGSGKSTLV 365 (670)
T ss_dssp ETTSEEEEECSTTSSHHHHH
T ss_pred cCCCEEEEEeeCCCCHHHHH
Confidence 56889999999999999986
No 221
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=82.84 E-value=0.36 Score=48.67 Aligned_cols=19 Identities=42% Similarity=0.579 Sum_probs=16.7
Q ss_pred CCEEEEEecCCCCcccccc
Q 008523 334 GDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 334 G~valfFGLSGTGKTTLsa 352 (563)
.+.++|+|++|||||+|+.
T Consensus 45 ~~~iLL~GppGtGKT~la~ 63 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAK 63 (322)
T ss_dssp CSEEEEESSSSSCHHHHHH
T ss_pred CceEEEECCCCccHHHHHH
Confidence 4679999999999999875
No 222
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=82.84 E-value=0.42 Score=40.87 Aligned_cols=17 Identities=29% Similarity=0.556 Sum_probs=15.1
Q ss_pred EEEEEecCCCCcccccc
Q 008523 336 VALFFGLSGTGKTTLST 352 (563)
Q Consensus 336 valfFGLSGTGKTTLsa 352 (563)
.++++|.+|+|||||..
T Consensus 5 ~i~v~G~~~~GKssl~~ 21 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTI 21 (166)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 48999999999999765
No 223
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=82.82 E-value=0.37 Score=53.51 Aligned_cols=20 Identities=40% Similarity=0.808 Sum_probs=18.3
Q ss_pred CCCCEEEEEecCCCCccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLS 351 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLs 351 (563)
+.|+.+.+.|+||||||||.
T Consensus 42 ~~Ge~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 42 PRGKLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp ETTSEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHh
Confidence 56899999999999999994
No 224
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=82.77 E-value=0.37 Score=51.88 Aligned_cols=21 Identities=48% Similarity=0.540 Sum_probs=18.5
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
+.|.++++.|+||||||||..
T Consensus 37 ~~Ge~~~l~G~nGsGKSTL~~ 57 (525)
T 1tf7_A 37 PIGRSTLVSGTSGTGKTLFSI 57 (525)
T ss_dssp ETTSEEEEEESTTSSHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHH
Confidence 468899999999999999765
No 225
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=82.69 E-value=0.36 Score=46.53 Aligned_cols=18 Identities=17% Similarity=0.194 Sum_probs=16.2
Q ss_pred CEEEEEecCCCCcccccc
Q 008523 335 DVALFFGLSGTGKTTLST 352 (563)
Q Consensus 335 ~valfFGLSGTGKTTLsa 352 (563)
.++++.|.+||||||++.
T Consensus 23 ~iI~I~G~~GSGKST~a~ 40 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCA 40 (252)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred EEEEEECCCCCCHHHHHH
Confidence 469999999999999876
No 226
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=82.69 E-value=0.38 Score=43.91 Aligned_cols=17 Identities=35% Similarity=0.585 Sum_probs=15.2
Q ss_pred EEEEEecCCCCcccccc
Q 008523 336 VALFFGLSGTGKTTLST 352 (563)
Q Consensus 336 valfFGLSGTGKTTLsa 352 (563)
.+++.|++|+|||||..
T Consensus 7 kv~lvG~~g~GKSTLl~ 23 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLS 23 (199)
T ss_dssp EEEEESSTTSSHHHHHH
T ss_pred EEEEECcCCCCHHHHHH
Confidence 58999999999999765
No 227
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=82.64 E-value=0.35 Score=43.56 Aligned_cols=17 Identities=41% Similarity=0.606 Sum_probs=15.3
Q ss_pred EEEEEecCCCCcccccc
Q 008523 336 VALFFGLSGTGKTTLST 352 (563)
Q Consensus 336 valfFGLSGTGKTTLsa 352 (563)
.+++.|+||+|||||..
T Consensus 4 kv~ivG~~gvGKStLl~ 20 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQ 20 (184)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58999999999999865
No 228
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=82.64 E-value=0.4 Score=50.33 Aligned_cols=20 Identities=30% Similarity=0.610 Sum_probs=17.6
Q ss_pred CCCEEEEEecCCCCcccccc
Q 008523 333 DGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 333 ~G~valfFGLSGTGKTTLsa 352 (563)
....+++.|+|||||||++.
T Consensus 257 ~~~lIil~G~pGSGKSTla~ 276 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQ 276 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHH
Confidence 35689999999999999876
No 229
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=82.62 E-value=0.16 Score=48.70 Aligned_cols=17 Identities=47% Similarity=0.645 Sum_probs=15.2
Q ss_pred EEEEEecCCCCcccccc
Q 008523 336 VALFFGLSGTGKTTLST 352 (563)
Q Consensus 336 valfFGLSGTGKTTLsa 352 (563)
.++|.|++|||||+|+.
T Consensus 46 ~vll~G~~GtGKT~la~ 62 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAK 62 (268)
T ss_dssp CCCCBCSSCSSHHHHHH
T ss_pred eEEEECCCCCcHHHHHH
Confidence 48999999999999875
No 230
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=82.59 E-value=0.39 Score=47.69 Aligned_cols=18 Identities=22% Similarity=0.270 Sum_probs=15.9
Q ss_pred CEEEEEecCCCCcccccc
Q 008523 335 DVALFFGLSGTGKTTLST 352 (563)
Q Consensus 335 ~valfFGLSGTGKTTLsa 352 (563)
..++|+|++|||||+|+.
T Consensus 37 ~~lLl~GppGtGKT~la~ 54 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCE 54 (293)
T ss_dssp SEEEEEECTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 568999999999999875
No 231
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=82.50 E-value=0.4 Score=49.74 Aligned_cols=19 Identities=32% Similarity=0.489 Sum_probs=16.3
Q ss_pred CCEEEEEecCCCCcccccc
Q 008523 334 GDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 334 G~valfFGLSGTGKTTLsa 352 (563)
|..+++.|++|||||||..
T Consensus 123 ~g~i~I~GptGSGKTTlL~ 141 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLA 141 (356)
T ss_dssp SEEEEEECSTTSCHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 3489999999999999765
No 232
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=82.48 E-value=0.37 Score=43.95 Aligned_cols=17 Identities=24% Similarity=0.440 Sum_probs=15.5
Q ss_pred EEEEEecCCCCcccccc
Q 008523 336 VALFFGLSGTGKTTLST 352 (563)
Q Consensus 336 valfFGLSGTGKTTLsa 352 (563)
++++.|.+||||||++.
T Consensus 4 ~i~i~G~~GsGKst~~~ 20 (208)
T 3ake_A 4 IVTIDGPSASGKSSVAR 20 (208)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 78999999999999876
No 233
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=82.47 E-value=0.44 Score=51.97 Aligned_cols=21 Identities=43% Similarity=0.567 Sum_probs=19.0
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
..|.++++.|+||+|||||..
T Consensus 45 ~~Ge~~~LvG~NGaGKSTLlk 65 (538)
T 1yqt_A 45 KEGMVVGIVGPNGTGKSTAVK 65 (538)
T ss_dssp CTTSEEEEECCTTSSHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 678999999999999999765
No 234
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=82.40 E-value=0.33 Score=49.25 Aligned_cols=20 Identities=35% Similarity=0.557 Sum_probs=17.1
Q ss_pred CCCEEEEEecCCCCcccccc
Q 008523 333 DGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 333 ~G~valfFGLSGTGKTTLsa 352 (563)
.+..++|.|++|||||+++.
T Consensus 50 ~~~~vll~GppGtGKT~la~ 69 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAE 69 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 34579999999999999875
No 235
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=82.18 E-value=0.35 Score=48.50 Aligned_cols=16 Identities=50% Similarity=0.821 Sum_probs=14.7
Q ss_pred EEEEecCCCCcccccc
Q 008523 337 ALFFGLSGTGKTTLST 352 (563)
Q Consensus 337 alfFGLSGTGKTTLsa 352 (563)
.+|.|++|||||||..
T Consensus 49 ~ll~Gp~G~GKTtla~ 64 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIV 64 (340)
T ss_dssp EEEECSSSSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 8999999999999765
No 236
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=82.15 E-value=0.43 Score=42.22 Aligned_cols=17 Identities=24% Similarity=0.350 Sum_probs=15.3
Q ss_pred EEEEEecCCCCcccccc
Q 008523 336 VALFFGLSGTGKTTLST 352 (563)
Q Consensus 336 valfFGLSGTGKTTLsa 352 (563)
.+++.|++|+|||||..
T Consensus 5 ~v~lvG~~gvGKStL~~ 21 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFN 21 (165)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58999999999999865
No 237
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=81.97 E-value=0.43 Score=46.48 Aligned_cols=21 Identities=38% Similarity=0.494 Sum_probs=18.4
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
..|..++|.|++|+||||++.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~ 39 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSH 39 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHH
Confidence 457789999999999999776
No 238
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=81.84 E-value=0.42 Score=45.52 Aligned_cols=19 Identities=21% Similarity=0.127 Sum_probs=16.6
Q ss_pred CCEEEEEecCCCCcccccc
Q 008523 334 GDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 334 G~valfFGLSGTGKTTLsa 352 (563)
+..++|.|.+|+||||++.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~ 20 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVK 20 (241)
T ss_dssp CEEEEEEECTTSSHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHH
Confidence 4568999999999999876
No 239
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=81.83 E-value=0.48 Score=47.31 Aligned_cols=17 Identities=41% Similarity=0.505 Sum_probs=15.7
Q ss_pred EEEEEecCCCCcccccc
Q 008523 336 VALFFGLSGTGKTTLST 352 (563)
Q Consensus 336 valfFGLSGTGKTTLsa 352 (563)
.++|.|++|||||||..
T Consensus 46 ~~li~G~~G~GKTtl~~ 62 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLR 62 (389)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 79999999999999875
No 240
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=81.81 E-value=0.35 Score=48.07 Aligned_cols=20 Identities=45% Similarity=0.791 Sum_probs=17.2
Q ss_pred CCCEEEEEecCCCCcccccc
Q 008523 333 DGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 333 ~G~valfFGLSGTGKTTLsa 352 (563)
.+..++|.|++|||||||+.
T Consensus 43 ~~~~vll~G~~G~GKT~l~~ 62 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVAR 62 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHH
Confidence 34579999999999999875
No 241
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=81.77 E-value=0.47 Score=45.62 Aligned_cols=19 Identities=37% Similarity=0.524 Sum_probs=17.1
Q ss_pred CCEEEEEecCCCCcccccc
Q 008523 334 GDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 334 G~valfFGLSGTGKTTLsa 352 (563)
|..++|.|++|+||||++.
T Consensus 3 g~~i~~eG~~gsGKsT~~~ 21 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARN 21 (213)
T ss_dssp CCEEEEEECTTSCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 6789999999999999765
No 242
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=81.58 E-value=0.41 Score=45.86 Aligned_cols=20 Identities=30% Similarity=0.366 Sum_probs=17.4
Q ss_pred CCCEEEEEecCCCCcccccc
Q 008523 333 DGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 333 ~G~valfFGLSGTGKTTLsa 352 (563)
.|..++|.|++|+||||++.
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~ 24 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRD 24 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHH
Confidence 36689999999999999775
No 243
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=81.46 E-value=0.24 Score=50.52 Aligned_cols=20 Identities=35% Similarity=0.627 Sum_probs=18.2
Q ss_pred CCCEEEEEecCCCCcccccc
Q 008523 333 DGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 333 ~G~valfFGLSGTGKTTLsa 352 (563)
.|.+++|.|.||+|||||..
T Consensus 172 ~G~~~~lvG~sG~GKSTLln 191 (307)
T 1t9h_A 172 QDKTTVFAGQSGVGKSSLLN 191 (307)
T ss_dssp TTSEEEEEESHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 58899999999999999865
No 244
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=81.42 E-value=0.42 Score=51.97 Aligned_cols=20 Identities=35% Similarity=0.614 Sum_probs=17.8
Q ss_pred CCCEEEEEecCCCCcccccc
Q 008523 333 DGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 333 ~G~valfFGLSGTGKTTLsa 352 (563)
.|..++|+|++|||||||+.
T Consensus 107 ~g~~vll~Gp~GtGKTtlar 126 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAK 126 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 47789999999999999865
No 245
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=81.41 E-value=0.5 Score=52.51 Aligned_cols=21 Identities=33% Similarity=0.512 Sum_probs=18.9
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
..|.++.+.|+||+|||||..
T Consensus 101 ~~Gei~~LvGpNGaGKSTLLk 121 (608)
T 3j16_B 101 RPGQVLGLVGTNGIGKSTALK 121 (608)
T ss_dssp CTTSEEEEECCTTSSHHHHHH
T ss_pred CCCCEEEEECCCCChHHHHHH
Confidence 579999999999999999764
No 246
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=81.29 E-value=0.5 Score=47.61 Aligned_cols=18 Identities=50% Similarity=0.698 Sum_probs=15.5
Q ss_pred CEEEEEecCCCCcccccc
Q 008523 335 DVALFFGLSGTGKTTLST 352 (563)
Q Consensus 335 ~valfFGLSGTGKTTLsa 352 (563)
.++++.|.||+|||||..
T Consensus 5 ~v~~i~G~~GaGKTTll~ 22 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLR 22 (318)
T ss_dssp EEEEEEESSSSSCHHHHH
T ss_pred cEEEEEecCCCCHHHHHH
Confidence 368999999999999764
No 247
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=81.21 E-value=0.44 Score=46.42 Aligned_cols=20 Identities=40% Similarity=0.597 Sum_probs=14.9
Q ss_pred CCCEEEEEecCCCCcccccc
Q 008523 333 DGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 333 ~G~valfFGLSGTGKTTLsa 352 (563)
.|..++|.|++|+||||++.
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~ 43 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQ 43 (227)
T ss_dssp CCCEEEEECCC---CHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 47789999999999999776
No 248
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=81.20 E-value=0.51 Score=51.78 Aligned_cols=21 Identities=38% Similarity=0.678 Sum_probs=19.0
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
+.|..+++.|+||+|||||..
T Consensus 367 ~~Ge~~~ivG~sGsGKSTll~ 387 (587)
T 3qf4_A 367 KPGSLVAVLGETGSGKSTLMN 387 (587)
T ss_dssp CTTCEEEEECSSSSSHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 678999999999999999765
No 249
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=81.20 E-value=0.49 Score=40.61 Aligned_cols=17 Identities=29% Similarity=0.612 Sum_probs=15.1
Q ss_pred EEEEEecCCCCcccccc
Q 008523 336 VALFFGLSGTGKTTLST 352 (563)
Q Consensus 336 valfFGLSGTGKTTLsa 352 (563)
.++|.|.+|+|||||..
T Consensus 5 ~i~v~G~~~~GKSsli~ 21 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTV 21 (167)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58999999999999854
No 250
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=81.19 E-value=0.5 Score=46.28 Aligned_cols=19 Identities=32% Similarity=0.492 Sum_probs=17.1
Q ss_pred CCEEEEEecCCCCcccccc
Q 008523 334 GDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 334 G~valfFGLSGTGKTTLsa 352 (563)
|..++|.|++|+||||++.
T Consensus 27 ~~~i~~eG~~GsGKsT~~~ 45 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQ 45 (236)
T ss_dssp CCEEEEEESTTSCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 6789999999999999776
No 251
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=81.15 E-value=0.57 Score=51.17 Aligned_cols=30 Identities=27% Similarity=0.377 Sum_probs=23.0
Q ss_pred eeecccceecCCCCEEEEEecCCCCcccccc
Q 008523 322 LSLHSGCNMGKDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 322 L~mH~sanvg~~G~valfFGLSGTGKTTLsa 352 (563)
+-+|+ ..+-+.|.++.+.|++|+|||||..
T Consensus 14 f~l~~-l~~~~~Gei~gLiGpNGaGKSTLlk 43 (538)
T 3ozx_A 14 FKLFG-LPTPKNNTILGVLGKNGVGKTTVLK 43 (538)
T ss_dssp CEEEC-CCCCCTTEEEEEECCTTSSHHHHHH
T ss_pred eeecC-CCCCCCCCEEEEECCCCCcHHHHHH
Confidence 34454 3345679999999999999999764
No 252
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=81.12 E-value=0.41 Score=47.69 Aligned_cols=16 Identities=44% Similarity=0.706 Sum_probs=14.7
Q ss_pred EEEEecCCCCcccccc
Q 008523 337 ALFFGLSGTGKTTLST 352 (563)
Q Consensus 337 alfFGLSGTGKTTLsa 352 (563)
++|.|++|||||||..
T Consensus 39 ~ll~Gp~G~GKTtl~~ 54 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCM 54 (354)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 8999999999999765
No 253
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=81.10 E-value=0.54 Score=50.28 Aligned_cols=21 Identities=38% Similarity=0.518 Sum_probs=17.6
Q ss_pred CCCCE--EEEEecCCCCcccccc
Q 008523 332 KDGDV--ALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~v--alfFGLSGTGKTTLsa 352 (563)
+.|.. +++.|.||+|||||..
T Consensus 38 ~~Gei~~vaLvG~nGaGKSTLln 60 (427)
T 2qag_B 38 SQGFCFNILCVGETGLGKSTLMD 60 (427)
T ss_dssp C-CCEEEEEEECSTTSSSHHHHH
T ss_pred cCCCeeEEEEECCCCCCHHHHHH
Confidence 56777 9999999999999765
No 254
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=81.07 E-value=0.46 Score=47.04 Aligned_cols=18 Identities=33% Similarity=0.560 Sum_probs=16.2
Q ss_pred CEEEEEecCCCCcccccc
Q 008523 335 DVALFFGLSGTGKTTLST 352 (563)
Q Consensus 335 ~valfFGLSGTGKTTLsa 352 (563)
..+++.|.+||||||++.
T Consensus 76 ~iI~I~G~~GSGKSTva~ 93 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQ 93 (281)
T ss_dssp EEEEEEECTTSCHHHHHH
T ss_pred EEEEEECCCCCCHHHHHH
Confidence 579999999999999775
No 255
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=80.94 E-value=0.48 Score=51.81 Aligned_cols=21 Identities=38% Similarity=0.714 Sum_probs=18.7
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
..|..+.+.|+||||||||..
T Consensus 292 ~~Gei~~i~G~nGsGKSTLl~ 312 (538)
T 3ozx_A 292 KEGEIIGILGPNGIGKTTFAR 312 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 568999999999999999764
No 256
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=80.92 E-value=0.5 Score=42.07 Aligned_cols=18 Identities=22% Similarity=0.279 Sum_probs=15.8
Q ss_pred CEEEEEecCCCCcccccc
Q 008523 335 DVALFFGLSGTGKTTLST 352 (563)
Q Consensus 335 ~valfFGLSGTGKTTLsa 352 (563)
..+++.|++|+|||||..
T Consensus 8 ~~i~lvG~~gvGKStL~~ 25 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFN 25 (188)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 369999999999999765
No 257
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=80.85 E-value=0.51 Score=40.52 Aligned_cols=17 Identities=29% Similarity=0.599 Sum_probs=15.2
Q ss_pred EEEEEecCCCCcccccc
Q 008523 336 VALFFGLSGTGKTTLST 352 (563)
Q Consensus 336 valfFGLSGTGKTTLsa 352 (563)
.++++|.+|+|||||..
T Consensus 6 ~i~v~G~~~~GKssl~~ 22 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTL 22 (168)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58999999999999765
No 258
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=80.81 E-value=0.51 Score=40.75 Aligned_cols=17 Identities=18% Similarity=0.352 Sum_probs=15.3
Q ss_pred EEEEEecCCCCcccccc
Q 008523 336 VALFFGLSGTGKTTLST 352 (563)
Q Consensus 336 valfFGLSGTGKTTLsa 352 (563)
.++++|.+|+|||||..
T Consensus 7 ~i~v~G~~~~GKssl~~ 23 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQ 23 (168)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECcCCCCHHHHHH
Confidence 58999999999999765
No 259
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=80.72 E-value=0.5 Score=47.57 Aligned_cols=19 Identities=26% Similarity=0.373 Sum_probs=16.9
Q ss_pred CCEEEEEecCCCCcccccc
Q 008523 334 GDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 334 G~valfFGLSGTGKTTLsa 352 (563)
+..++|+|++|||||+|+.
T Consensus 152 ~~~lll~G~~GtGKT~La~ 170 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLA 170 (308)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4689999999999999875
No 260
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=80.63 E-value=0.56 Score=54.66 Aligned_cols=22 Identities=32% Similarity=0.655 Sum_probs=19.5
Q ss_pred CCCCEEEEEecCCCCccccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLSTD 353 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsad 353 (563)
+.++-++|.|+||+|||+|+.|
T Consensus 22 p~~~l~v~tG~SGSGKSsLafd 43 (916)
T 3pih_A 22 PKNRLVVITGVSGSGKSSLAMD 43 (916)
T ss_dssp ETTSEEEEEESTTSSSHHHHTT
T ss_pred CCCcEEEEECCCCCcHHHHHHH
Confidence 4578899999999999999875
No 261
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=80.63 E-value=0.43 Score=47.36 Aligned_cols=17 Identities=53% Similarity=0.716 Sum_probs=15.4
Q ss_pred EEEEEecCCCCcccccc
Q 008523 336 VALFFGLSGTGKTTLST 352 (563)
Q Consensus 336 valfFGLSGTGKTTLsa 352 (563)
.++|.|++|||||+|+.
T Consensus 57 ~vll~G~~GtGKT~la~ 73 (338)
T 3pfi_A 57 HILFSGPAGLGKTTLAN 73 (338)
T ss_dssp CEEEECSTTSSHHHHHH
T ss_pred eEEEECcCCCCHHHHHH
Confidence 58999999999999875
No 262
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=80.62 E-value=0.52 Score=40.49 Aligned_cols=17 Identities=24% Similarity=0.413 Sum_probs=15.2
Q ss_pred EEEEEecCCCCcccccc
Q 008523 336 VALFFGLSGTGKTTLST 352 (563)
Q Consensus 336 valfFGLSGTGKTTLsa 352 (563)
.+++.|.+|+|||||..
T Consensus 3 ki~v~G~~~~GKSsli~ 19 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFN 19 (161)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58999999999999765
No 263
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=80.60 E-value=0.52 Score=40.64 Aligned_cols=17 Identities=18% Similarity=0.425 Sum_probs=15.0
Q ss_pred EEEEEecCCCCcccccc
Q 008523 336 VALFFGLSGTGKTTLST 352 (563)
Q Consensus 336 valfFGLSGTGKTTLsa 352 (563)
.++++|.+|+|||||..
T Consensus 5 ~i~v~G~~~~GKssli~ 21 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVL 21 (170)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 48999999999999864
No 264
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=80.56 E-value=0.47 Score=54.80 Aligned_cols=22 Identities=32% Similarity=0.635 Sum_probs=19.4
Q ss_pred CCCCEEEEEecCCCCccccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLSTD 353 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsad 353 (563)
+-+.-++|.|+||+|||||+.|
T Consensus 34 P~~~l~viTGvSGSGKSSLafd 55 (842)
T 2vf7_A 34 PRDALVVFTGVSGSGKSSLAFG 55 (842)
T ss_dssp ESSSEEEEESSTTSSHHHHHTT
T ss_pred cCCCEEEEECCCCCCHHHHHHH
Confidence 4578899999999999999875
No 265
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=80.47 E-value=0.57 Score=40.59 Aligned_cols=17 Identities=35% Similarity=0.698 Sum_probs=15.2
Q ss_pred EEEEEecCCCCcccccc
Q 008523 336 VALFFGLSGTGKTTLST 352 (563)
Q Consensus 336 valfFGLSGTGKTTLsa 352 (563)
.+++.|.+|+|||||..
T Consensus 4 ki~~vG~~~~GKSsli~ 20 (166)
T 3q72_A 4 KVLLLGAPGVGKSALAR 20 (166)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58999999999999865
No 266
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=80.38 E-value=0.61 Score=46.63 Aligned_cols=19 Identities=53% Similarity=0.728 Sum_probs=16.7
Q ss_pred CCEEEEEecCCCCcccccc
Q 008523 334 GDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 334 G~valfFGLSGTGKTTLsa 352 (563)
...++|.|++|||||||+.
T Consensus 45 ~~~vll~G~~G~GKT~la~ 63 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSK 63 (384)
T ss_dssp CCEEEEEECTTSSHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHH
Confidence 4579999999999999875
No 267
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=80.36 E-value=0.53 Score=42.18 Aligned_cols=19 Identities=32% Similarity=0.398 Sum_probs=16.5
Q ss_pred CCEEEEEecCCCCcccccc
Q 008523 334 GDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 334 G~valfFGLSGTGKTTLsa 352 (563)
...++++|++|+|||||..
T Consensus 48 ~~~i~vvG~~g~GKSsll~ 66 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLT 66 (193)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 3579999999999999765
No 268
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=80.31 E-value=0.61 Score=45.04 Aligned_cols=20 Identities=45% Similarity=0.589 Sum_probs=17.8
Q ss_pred CCCEEEEEecCCCCcccccc
Q 008523 333 DGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 333 ~G~valfFGLSGTGKTTLsa 352 (563)
.|..++|.|++|+||||++.
T Consensus 4 ~g~~i~~eG~~g~GKst~~~ 23 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCN 23 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 47789999999999999776
No 269
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=80.29 E-value=0.52 Score=51.94 Aligned_cols=21 Identities=19% Similarity=0.403 Sum_probs=18.1
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
+.+.+++|.|+|||||||++.
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~ 414 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIAR 414 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHH
T ss_pred ccceEEEeecCCCCCHHHHHH
Confidence 346689999999999999876
No 270
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=80.20 E-value=0.55 Score=41.13 Aligned_cols=17 Identities=41% Similarity=0.622 Sum_probs=15.3
Q ss_pred EEEEEecCCCCcccccc
Q 008523 336 VALFFGLSGTGKTTLST 352 (563)
Q Consensus 336 valfFGLSGTGKTTLsa 352 (563)
.++++|.+|+|||||..
T Consensus 10 ~i~v~G~~~~GKSsli~ 26 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMH 26 (182)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 59999999999999765
No 271
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=80.20 E-value=0.55 Score=40.49 Aligned_cols=17 Identities=29% Similarity=0.587 Sum_probs=15.1
Q ss_pred EEEEEecCCCCcccccc
Q 008523 336 VALFFGLSGTGKTTLST 352 (563)
Q Consensus 336 valfFGLSGTGKTTLsa 352 (563)
.++++|.+|+|||||..
T Consensus 5 ki~v~G~~~~GKssli~ 21 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTV 21 (167)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58999999999999765
No 272
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=80.20 E-value=0.6 Score=44.39 Aligned_cols=20 Identities=20% Similarity=0.214 Sum_probs=17.6
Q ss_pred CCCEEEEEecCCCCcccccc
Q 008523 333 DGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 333 ~G~valfFGLSGTGKTTLsa 352 (563)
.+..+++.|.+||||||++.
T Consensus 15 ~~~~i~i~G~~gsGKst~~~ 34 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAK 34 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 46789999999999999765
No 273
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=80.19 E-value=0.59 Score=40.44 Aligned_cols=17 Identities=41% Similarity=0.561 Sum_probs=15.1
Q ss_pred EEEEEecCCCCcccccc
Q 008523 336 VALFFGLSGTGKTTLST 352 (563)
Q Consensus 336 valfFGLSGTGKTTLsa 352 (563)
.++++|++|+|||||..
T Consensus 5 ~i~v~G~~~~GKssli~ 21 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLV 21 (170)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECcCCCCHHHHHH
Confidence 58999999999999765
No 274
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=80.17 E-value=0.54 Score=43.87 Aligned_cols=21 Identities=43% Similarity=0.697 Sum_probs=18.4
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
+.|..+++.|.+|+|||+|+.
T Consensus 28 ~~G~l~~i~G~pG~GKT~l~l 48 (251)
T 2zts_A 28 PEGTTVLLTGGTGTGKTTFAA 48 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHH
Confidence 457899999999999999875
No 275
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=80.08 E-value=0.51 Score=41.01 Aligned_cols=17 Identities=41% Similarity=0.661 Sum_probs=15.1
Q ss_pred EEEEEecCCCCcccccc
Q 008523 336 VALFFGLSGTGKTTLST 352 (563)
Q Consensus 336 valfFGLSGTGKTTLsa 352 (563)
.+++.|++|+|||||..
T Consensus 4 ki~ivG~~~~GKSsli~ 20 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAG 20 (169)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 48999999999999765
No 276
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=80.07 E-value=0.48 Score=48.33 Aligned_cols=21 Identities=33% Similarity=0.534 Sum_probs=18.5
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
..+.+++|.|++|+||||++.
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~ 123 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLA 123 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHH
Confidence 457899999999999999776
No 277
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=80.03 E-value=0.59 Score=40.85 Aligned_cols=18 Identities=28% Similarity=0.473 Sum_probs=15.8
Q ss_pred CEEEEEecCCCCcccccc
Q 008523 335 DVALFFGLSGTGKTTLST 352 (563)
Q Consensus 335 ~valfFGLSGTGKTTLsa 352 (563)
..++++|.+|+|||||..
T Consensus 10 ~~i~v~G~~~~GKssli~ 27 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTI 27 (181)
T ss_dssp EEEEEEECTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 469999999999999765
No 278
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=80.03 E-value=0.54 Score=55.24 Aligned_cols=22 Identities=41% Similarity=0.724 Sum_probs=19.5
Q ss_pred CCCCEEEEEecCCCCccccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLSTD 353 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsad 353 (563)
+.++.++|.|+||+|||+|+.|
T Consensus 44 P~~~lvv~tG~SGSGKSSLafd 65 (993)
T 2ygr_A 44 PRDALIVFTGLSGSGKSSLAFD 65 (993)
T ss_dssp ESSSEEEEEESTTSSHHHHHTT
T ss_pred cCCCEEEEECCCCCcHHHHHHH
Confidence 4578899999999999999885
No 279
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=79.90 E-value=0.56 Score=55.00 Aligned_cols=22 Identities=41% Similarity=0.773 Sum_probs=19.4
Q ss_pred CCCCEEEEEecCCCCccccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLSTD 353 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsad 353 (563)
+.++.++|.|+||+|||+|+.|
T Consensus 42 P~~~lvv~tG~SGSGKSSLafd 63 (972)
T 2r6f_A 42 PRGKLVVLTGLSGSGKSSLAFD 63 (972)
T ss_dssp ETTSEEEEEESTTSSHHHHHTT
T ss_pred cCCcEEEEECCCCCCHHHHHHH
Confidence 4577899999999999999885
No 280
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=79.80 E-value=0.57 Score=40.63 Aligned_cols=17 Identities=29% Similarity=0.431 Sum_probs=15.2
Q ss_pred EEEEEecCCCCcccccc
Q 008523 336 VALFFGLSGTGKTTLST 352 (563)
Q Consensus 336 valfFGLSGTGKTTLsa 352 (563)
.++++|.+|+|||||..
T Consensus 8 ~i~v~G~~~~GKssli~ 24 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVL 24 (170)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECcCCCCHHHHHH
Confidence 58999999999999864
No 281
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=79.65 E-value=0.48 Score=45.49 Aligned_cols=18 Identities=33% Similarity=0.580 Sum_probs=16.0
Q ss_pred CEEEEEecCCCCcccccc
Q 008523 335 DVALFFGLSGTGKTTLST 352 (563)
Q Consensus 335 ~valfFGLSGTGKTTLsa 352 (563)
..++|.|.+|||||+|+.
T Consensus 30 ~~vll~G~~GtGKt~la~ 47 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIAS 47 (265)
T ss_dssp SCEEEECCTTSCHHHHHH
T ss_pred CCEEEECCCCCcHHHHHH
Confidence 569999999999999875
No 282
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=79.53 E-value=0.59 Score=40.73 Aligned_cols=17 Identities=35% Similarity=0.665 Sum_probs=15.3
Q ss_pred EEEEEecCCCCcccccc
Q 008523 336 VALFFGLSGTGKTTLST 352 (563)
Q Consensus 336 valfFGLSGTGKTTLsa 352 (563)
.++++|.+|+|||||..
T Consensus 6 ki~i~G~~~vGKSsl~~ 22 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLAS 22 (175)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCccHHHHHH
Confidence 58999999999999765
No 283
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=79.49 E-value=0.63 Score=51.62 Aligned_cols=21 Identities=52% Similarity=0.615 Sum_probs=19.0
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
..|.++++.|+||+|||||..
T Consensus 115 ~~Ge~~~LiG~NGsGKSTLlk 135 (607)
T 3bk7_A 115 KDGMVVGIVGPNGTGKTTAVK 135 (607)
T ss_dssp CTTSEEEEECCTTSSHHHHHH
T ss_pred CCCCEEEEECCCCChHHHHHH
Confidence 678999999999999999764
No 284
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=79.47 E-value=0.56 Score=49.51 Aligned_cols=19 Identities=47% Similarity=0.714 Sum_probs=16.5
Q ss_pred CCEEEEEecCCCCcccccc
Q 008523 334 GDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 334 G~valfFGLSGTGKTTLsa 352 (563)
+..++|+|++|||||+|+.
T Consensus 63 ~~~iLl~GppGtGKT~la~ 81 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALAL 81 (456)
T ss_dssp TCEEEEECCTTSSHHHHHH
T ss_pred CCeEEEECCCcCCHHHHHH
Confidence 3569999999999999875
No 285
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=79.45 E-value=0.62 Score=47.51 Aligned_cols=21 Identities=38% Similarity=0.542 Sum_probs=17.8
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
.....++|+|++|||||+|+.
T Consensus 115 ~~~~~vLl~GppGtGKT~la~ 135 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGK 135 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHH
Confidence 345679999999999999875
No 286
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=79.36 E-value=0.63 Score=41.30 Aligned_cols=18 Identities=33% Similarity=0.490 Sum_probs=16.0
Q ss_pred CEEEEEecCCCCcccccc
Q 008523 335 DVALFFGLSGTGKTTLST 352 (563)
Q Consensus 335 ~valfFGLSGTGKTTLsa 352 (563)
..++++|.+|+|||||..
T Consensus 24 ~~i~v~G~~~~GKSsli~ 41 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLN 41 (195)
T ss_dssp CEEEEEEBTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 479999999999999865
No 287
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=79.23 E-value=0.51 Score=48.04 Aligned_cols=19 Identities=32% Similarity=0.566 Sum_probs=16.5
Q ss_pred CCEEEEEecCCCCcccccc
Q 008523 334 GDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 334 G~valfFGLSGTGKTTLsa 352 (563)
...++|.|++|||||||+.
T Consensus 72 ~~~ill~Gp~GtGKT~la~ 90 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQ 90 (376)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHH
Confidence 4569999999999999875
No 288
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=79.07 E-value=0.63 Score=40.22 Aligned_cols=17 Identities=41% Similarity=0.563 Sum_probs=15.0
Q ss_pred EEEEEecCCCCcccccc
Q 008523 336 VALFFGLSGTGKTTLST 352 (563)
Q Consensus 336 valfFGLSGTGKTTLsa 352 (563)
.++++|.+|+|||||..
T Consensus 2 ki~~~G~~~~GKssl~~ 18 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILY 18 (164)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47999999999999765
No 289
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=79.04 E-value=0.45 Score=47.04 Aligned_cols=16 Identities=50% Similarity=0.711 Sum_probs=14.8
Q ss_pred EEEEecCCCCcccccc
Q 008523 337 ALFFGLSGTGKTTLST 352 (563)
Q Consensus 337 alfFGLSGTGKTTLsa 352 (563)
++|+|++|||||+|+.
T Consensus 48 vLl~G~~GtGKT~la~ 63 (350)
T 1g8p_A 48 VLVFGDRGTGKSTAVR 63 (350)
T ss_dssp EEEECCGGGCTTHHHH
T ss_pred EEEECCCCccHHHHHH
Confidence 9999999999999875
No 290
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=78.95 E-value=0.64 Score=40.18 Aligned_cols=17 Identities=35% Similarity=0.606 Sum_probs=15.3
Q ss_pred EEEEEecCCCCcccccc
Q 008523 336 VALFFGLSGTGKTTLST 352 (563)
Q Consensus 336 valfFGLSGTGKTTLsa 352 (563)
.++++|.+|+|||||..
T Consensus 5 ~i~v~G~~~~GKssli~ 21 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVL 21 (172)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58999999999999765
No 291
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=78.90 E-value=0.64 Score=40.73 Aligned_cols=17 Identities=29% Similarity=0.602 Sum_probs=15.3
Q ss_pred EEEEEecCCCCcccccc
Q 008523 336 VALFFGLSGTGKTTLST 352 (563)
Q Consensus 336 valfFGLSGTGKTTLsa 352 (563)
.++++|.+|+|||||..
T Consensus 9 ~i~v~G~~~~GKSsli~ 25 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMN 25 (177)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58999999999999765
No 292
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=78.78 E-value=0.65 Score=40.04 Aligned_cols=17 Identities=29% Similarity=0.470 Sum_probs=15.2
Q ss_pred EEEEEecCCCCcccccc
Q 008523 336 VALFFGLSGTGKTTLST 352 (563)
Q Consensus 336 valfFGLSGTGKTTLsa 352 (563)
.++++|.+|+|||||..
T Consensus 8 ~i~v~G~~~~GKssli~ 24 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVL 24 (170)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58999999999999764
No 293
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=78.76 E-value=0.69 Score=40.34 Aligned_cols=17 Identities=41% Similarity=0.604 Sum_probs=15.3
Q ss_pred EEEEEecCCCCcccccc
Q 008523 336 VALFFGLSGTGKTTLST 352 (563)
Q Consensus 336 valfFGLSGTGKTTLsa 352 (563)
.++|+|.+|+|||||..
T Consensus 16 ~i~v~G~~~~GKssli~ 32 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLIT 32 (179)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 59999999999999765
No 294
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=78.70 E-value=0.63 Score=49.32 Aligned_cols=20 Identities=30% Similarity=0.411 Sum_probs=16.7
Q ss_pred CCCEEEEEecCCCCcccccc
Q 008523 333 DGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 333 ~G~valfFGLSGTGKTTLsa 352 (563)
.|..+++.|++|+|||||..
T Consensus 166 ~ggii~I~GpnGSGKTTlL~ 185 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLY 185 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHH
T ss_pred cCCeEEEECCCCCCHHHHHH
Confidence 34578999999999999665
No 295
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=78.61 E-value=0.47 Score=46.50 Aligned_cols=19 Identities=47% Similarity=0.662 Sum_probs=16.4
Q ss_pred CCEEEEEecCCCCcccccc
Q 008523 334 GDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 334 G~valfFGLSGTGKTTLsa 352 (563)
...++|.|++|||||||+.
T Consensus 38 ~~~vll~G~~GtGKT~la~ 56 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAH 56 (324)
T ss_dssp CCCCEEECCTTCCCHHHHH
T ss_pred CCcEEEECCCCCCHHHHHH
Confidence 3569999999999999875
No 296
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=78.54 E-value=0.67 Score=40.24 Aligned_cols=18 Identities=44% Similarity=0.613 Sum_probs=16.0
Q ss_pred CEEEEEecCCCCcccccc
Q 008523 335 DVALFFGLSGTGKTTLST 352 (563)
Q Consensus 335 ~valfFGLSGTGKTTLsa 352 (563)
..++++|.+|+|||||..
T Consensus 8 ~~i~v~G~~~~GKssl~~ 25 (171)
T 1upt_A 8 MRILILGLDGAGKTTILY 25 (171)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 469999999999999865
No 297
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=78.50 E-value=0.69 Score=51.42 Aligned_cols=21 Identities=43% Similarity=0.726 Sum_probs=18.4
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
..|.++.+.|+||+|||||..
T Consensus 376 ~~GEiv~iiG~NGsGKSTLlk 396 (608)
T 3j16_B 376 SDSEILVMMGENGTGKTTLIK 396 (608)
T ss_dssp CTTCEEEEESCTTSSHHHHHH
T ss_pred ccceEEEEECCCCCcHHHHHH
Confidence 457899999999999999764
No 298
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=78.43 E-value=0.55 Score=48.00 Aligned_cols=18 Identities=39% Similarity=0.665 Sum_probs=15.9
Q ss_pred CEEEEEecCCCCcccccc
Q 008523 335 DVALFFGLSGTGKTTLST 352 (563)
Q Consensus 335 ~valfFGLSGTGKTTLsa 352 (563)
..++|+|++|||||+|+.
T Consensus 85 ~~iLL~GppGtGKT~la~ 102 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAK 102 (355)
T ss_dssp CCEEEECSTTSCHHHHHH
T ss_pred ceEEEECCCCCcHHHHHH
Confidence 459999999999999875
No 299
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.38 E-value=0.6 Score=49.97 Aligned_cols=18 Identities=50% Similarity=0.741 Sum_probs=16.0
Q ss_pred CEEEEEecCCCCcccccc
Q 008523 335 DVALFFGLSGTGKTTLST 352 (563)
Q Consensus 335 ~valfFGLSGTGKTTLsa 352 (563)
+.+||+|++|||||.|+.
T Consensus 216 rGvLLyGPPGTGKTllAk 233 (434)
T 4b4t_M 216 KGALMYGPPGTGKTLLAR 233 (434)
T ss_dssp CEEEEESCTTSSHHHHHH
T ss_pred CeeEEECcCCCCHHHHHH
Confidence 569999999999999865
No 300
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=78.23 E-value=0.68 Score=40.85 Aligned_cols=17 Identities=41% Similarity=0.446 Sum_probs=15.3
Q ss_pred EEEEEecCCCCcccccc
Q 008523 336 VALFFGLSGTGKTTLST 352 (563)
Q Consensus 336 valfFGLSGTGKTTLsa 352 (563)
.++++|.+|+|||||..
T Consensus 13 ki~v~G~~~~GKSsli~ 29 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLY 29 (195)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 59999999999999765
No 301
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=78.23 E-value=0.67 Score=49.90 Aligned_cols=21 Identities=38% Similarity=0.494 Sum_probs=18.4
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
..|.++++.|++|+|||||..
T Consensus 279 ~~G~i~~i~G~~GsGKSTLl~ 299 (525)
T 1tf7_A 279 FKDSIILATGATGTGKTLLVS 299 (525)
T ss_dssp ESSCEEEEEECTTSSHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHH
Confidence 457899999999999999865
No 302
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=78.20 E-value=0.65 Score=44.94 Aligned_cols=21 Identities=29% Similarity=0.447 Sum_probs=17.9
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
+..++++++|+.|+||+|++.
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~ 47 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCE 47 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHH
Confidence 445789999999999999775
No 303
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=78.15 E-value=0.69 Score=41.33 Aligned_cols=17 Identities=29% Similarity=0.556 Sum_probs=15.4
Q ss_pred EEEEEecCCCCcccccc
Q 008523 336 VALFFGLSGTGKTTLST 352 (563)
Q Consensus 336 valfFGLSGTGKTTLsa 352 (563)
.++|+|.+|+|||||..
T Consensus 23 ki~vvG~~~~GKSsli~ 39 (190)
T 3con_A 23 KLVVVGAGGVGKSALTI 39 (190)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECcCCCCHHHHHH
Confidence 59999999999999865
No 304
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=78.03 E-value=0.69 Score=50.39 Aligned_cols=21 Identities=43% Similarity=0.626 Sum_probs=18.8
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
..|..+++.|++|+|||||..
T Consensus 310 ~~Ge~~~i~G~NGsGKSTLlk 330 (538)
T 1yqt_A 310 KKGEVIGIVGPNGIGKTTFVK 330 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 568899999999999999765
No 305
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=78.03 E-value=0.67 Score=48.17 Aligned_cols=20 Identities=35% Similarity=0.649 Sum_probs=17.6
Q ss_pred CCCEEEEEecCCCCcccccc
Q 008523 333 DGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 333 ~G~valfFGLSGTGKTTLsa 352 (563)
.+..+++.|++|+|||||+.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~ 58 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSI 58 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHH
Confidence 45689999999999999876
No 306
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=77.97 E-value=0.71 Score=39.91 Aligned_cols=17 Identities=24% Similarity=0.438 Sum_probs=15.2
Q ss_pred EEEEEecCCCCcccccc
Q 008523 336 VALFFGLSGTGKTTLST 352 (563)
Q Consensus 336 valfFGLSGTGKTTLsa 352 (563)
.++++|.+|+|||||..
T Consensus 8 ~i~v~G~~~~GKSsli~ 24 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMW 24 (170)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECcCCCCHHHHHH
Confidence 58999999999999865
No 307
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=77.82 E-value=0.65 Score=43.75 Aligned_cols=18 Identities=39% Similarity=0.381 Sum_probs=15.9
Q ss_pred CEEEEEecCCCCcccccc
Q 008523 335 DVALFFGLSGTGKTTLST 352 (563)
Q Consensus 335 ~valfFGLSGTGKTTLsa 352 (563)
.++.+.|.+||||||++.
T Consensus 13 ~iIgltG~~GSGKSTva~ 30 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCE 30 (192)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 468999999999999876
No 308
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=77.81 E-value=0.71 Score=40.34 Aligned_cols=17 Identities=41% Similarity=0.548 Sum_probs=15.3
Q ss_pred EEEEEecCCCCcccccc
Q 008523 336 VALFFGLSGTGKTTLST 352 (563)
Q Consensus 336 valfFGLSGTGKTTLsa 352 (563)
.++++|.+|+|||||..
T Consensus 11 ~i~v~G~~~~GKssl~~ 27 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLL 27 (181)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 59999999999999765
No 309
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=77.69 E-value=0.6 Score=46.10 Aligned_cols=16 Identities=50% Similarity=0.804 Sum_probs=14.8
Q ss_pred EEEEecCCCCcccccc
Q 008523 337 ALFFGLSGTGKTTLST 352 (563)
Q Consensus 337 alfFGLSGTGKTTLsa 352 (563)
++|.|++|||||||+.
T Consensus 61 ~ll~G~~G~GKT~la~ 76 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTIL 76 (353)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 8999999999999875
No 310
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=77.66 E-value=0.64 Score=49.49 Aligned_cols=18 Identities=44% Similarity=0.754 Sum_probs=16.0
Q ss_pred CEEEEEecCCCCcccccc
Q 008523 335 DVALFFGLSGTGKTTLST 352 (563)
Q Consensus 335 ~valfFGLSGTGKTTLsa 352 (563)
..++|+|++|||||||+.
T Consensus 51 ~~vLL~GppGtGKTtlAr 68 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAE 68 (447)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred cEEEEECCCCCcHHHHHH
Confidence 368999999999999875
No 311
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=77.65 E-value=0.77 Score=40.68 Aligned_cols=17 Identities=41% Similarity=0.546 Sum_probs=15.1
Q ss_pred EEEEEecCCCCcccccc
Q 008523 336 VALFFGLSGTGKTTLST 352 (563)
Q Consensus 336 valfFGLSGTGKTTLsa 352 (563)
.+++.|.+|+|||||..
T Consensus 3 ki~v~G~~~~GKSsli~ 19 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIY 19 (190)
T ss_dssp EEEEEEBTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999999765
No 312
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=77.63 E-value=0.67 Score=48.22 Aligned_cols=20 Identities=40% Similarity=0.669 Sum_probs=17.5
Q ss_pred CCCEEEEEecCCCCcccccc
Q 008523 333 DGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 333 ~G~valfFGLSGTGKTTLsa 352 (563)
.|.+++++|++|+|||||+.
T Consensus 60 ~G~i~~I~GppGsGKSTLal 79 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLAL 79 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 36789999999999999865
No 313
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=77.59 E-value=1 Score=54.28 Aligned_cols=21 Identities=33% Similarity=0.564 Sum_probs=18.6
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
+.|..+++.|.||+|||||..
T Consensus 1103 ~~Ge~vaIVG~SGsGKSTL~~ 1123 (1321)
T 4f4c_A 1103 EPGQTLALVGPSGCGKSTVVA 1123 (1321)
T ss_dssp CTTCEEEEECSTTSSTTSHHH
T ss_pred CCCCEEEEECCCCChHHHHHH
Confidence 458899999999999999765
No 314
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=77.56 E-value=0.75 Score=47.38 Aligned_cols=20 Identities=35% Similarity=0.579 Sum_probs=17.8
Q ss_pred CCCEEEEEecCCCCcccccc
Q 008523 333 DGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 333 ~G~valfFGLSGTGKTTLsa 352 (563)
.|..++++|.+|+|||||+.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal 79 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVAL 79 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 47899999999999999865
No 315
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=77.54 E-value=0.74 Score=40.46 Aligned_cols=18 Identities=28% Similarity=0.573 Sum_probs=15.7
Q ss_pred CEEEEEecCCCCcccccc
Q 008523 335 DVALFFGLSGTGKTTLST 352 (563)
Q Consensus 335 ~valfFGLSGTGKTTLsa 352 (563)
..++|+|.+|+|||||..
T Consensus 19 ~ki~v~G~~~~GKSsli~ 36 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTL 36 (187)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 359999999999999865
No 316
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=77.53 E-value=0.74 Score=40.66 Aligned_cols=17 Identities=29% Similarity=0.558 Sum_probs=15.2
Q ss_pred EEEEEecCCCCcccccc
Q 008523 336 VALFFGLSGTGKTTLST 352 (563)
Q Consensus 336 valfFGLSGTGKTTLsa 352 (563)
.++|+|.+|+|||||..
T Consensus 6 ki~v~G~~~~GKSsli~ 22 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTI 22 (189)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58999999999999765
No 317
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=77.49 E-value=0.78 Score=40.47 Aligned_cols=20 Identities=40% Similarity=0.531 Sum_probs=16.9
Q ss_pred CCCEEEEEecCCCCcccccc
Q 008523 333 DGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 333 ~G~valfFGLSGTGKTTLsa 352 (563)
....+++.|++|+|||||..
T Consensus 17 ~~~~i~v~G~~~~GKssli~ 36 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILY 36 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHH
Confidence 34579999999999999765
No 318
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=77.41 E-value=0.73 Score=41.71 Aligned_cols=17 Identities=24% Similarity=0.259 Sum_probs=15.5
Q ss_pred EEEEEecCCCCcccccc
Q 008523 336 VALFFGLSGTGKTTLST 352 (563)
Q Consensus 336 valfFGLSGTGKTTLsa 352 (563)
.++|+|++|+|||||..
T Consensus 22 ki~ivG~~~vGKSsL~~ 38 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVH 38 (184)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 59999999999999874
No 319
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=77.35 E-value=0.72 Score=51.62 Aligned_cols=20 Identities=50% Similarity=0.675 Sum_probs=17.6
Q ss_pred CCCEEEEEecCCCCcccccc
Q 008523 333 DGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 333 ~G~valfFGLSGTGKTTLsa 352 (563)
.|..++|.|+|||||||++.
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr 70 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSM 70 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHH
Confidence 46689999999999999875
No 320
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=77.32 E-value=0.71 Score=47.42 Aligned_cols=20 Identities=40% Similarity=0.612 Sum_probs=17.4
Q ss_pred CCCEEEEEecCCCCcccccc
Q 008523 333 DGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 333 ~G~valfFGLSGTGKTTLsa 352 (563)
....++|+|++|||||+|+.
T Consensus 147 ~~~~vLL~GppGtGKT~la~ 166 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAK 166 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHH
Confidence 35689999999999999875
No 321
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=77.31 E-value=0.79 Score=40.99 Aligned_cols=19 Identities=21% Similarity=0.198 Sum_probs=16.5
Q ss_pred CCEEEEEecCCCCcccccc
Q 008523 334 GDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 334 G~valfFGLSGTGKTTLsa 352 (563)
-..++++|.+|+|||||..
T Consensus 23 ~~~i~v~G~~~~GKSsli~ 41 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFIN 41 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 3579999999999999765
No 322
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=77.26 E-value=0.78 Score=46.20 Aligned_cols=21 Identities=38% Similarity=0.616 Sum_probs=18.6
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
+.|..++++|.+|+|||||+.
T Consensus 105 ~~G~i~~i~G~~GsGKT~la~ 125 (324)
T 2z43_A 105 ETRTMTEFFGEFGSGKTQLCH 125 (324)
T ss_dssp ETTSEEEEEESTTSSHHHHHH
T ss_pred CCCcEEEEECCCCCCHhHHHH
Confidence 457899999999999999875
No 323
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=77.21 E-value=0.6 Score=51.23 Aligned_cols=19 Identities=37% Similarity=0.564 Sum_probs=16.7
Q ss_pred CCEEEEEecCCCCcccccc
Q 008523 334 GDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 334 G~valfFGLSGTGKTTLsa 352 (563)
|..++|+|++|||||||+.
T Consensus 60 g~~vll~Gp~GtGKTtlar 78 (604)
T 3k1j_A 60 KRHVLLIGEPGTGKSMLGQ 78 (604)
T ss_dssp TCCEEEECCTTSSHHHHHH
T ss_pred CCEEEEEeCCCCCHHHHHH
Confidence 4589999999999999875
No 324
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=77.13 E-value=0.87 Score=40.28 Aligned_cols=17 Identities=41% Similarity=0.487 Sum_probs=9.4
Q ss_pred EEEEEecCCCCcccccc
Q 008523 336 VALFFGLSGTGKTTLST 352 (563)
Q Consensus 336 valfFGLSGTGKTTLsa 352 (563)
.+++.|.+|+|||||..
T Consensus 10 ki~v~G~~~~GKssl~~ 26 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLF 26 (183)
T ss_dssp EEEEECCCCC-------
T ss_pred EEEEECCCCCCHHHHHH
Confidence 59999999999999865
No 325
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=77.13 E-value=0.77 Score=40.29 Aligned_cols=17 Identities=41% Similarity=0.558 Sum_probs=15.4
Q ss_pred EEEEEecCCCCcccccc
Q 008523 336 VALFFGLSGTGKTTLST 352 (563)
Q Consensus 336 valfFGLSGTGKTTLsa 352 (563)
.+++.|.+|+|||||..
T Consensus 12 ~i~v~G~~~~GKssli~ 28 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLV 28 (180)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECcCCCCHHHHHH
Confidence 59999999999999765
No 326
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=77.10 E-value=0.67 Score=50.24 Aligned_cols=19 Identities=42% Similarity=0.583 Sum_probs=17.0
Q ss_pred CCEEEEEecCCCCcccccc
Q 008523 334 GDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 334 G~valfFGLSGTGKTTLsa 352 (563)
|..++|||.||+|||||..
T Consensus 151 Gq~~~i~G~sGvGKTtL~~ 169 (473)
T 1sky_E 151 GGKIGLFGGAGVGKTVLIQ 169 (473)
T ss_dssp TCEEEEECCSSSCHHHHHH
T ss_pred CCEEEEECCCCCCccHHHH
Confidence 5679999999999999876
No 327
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=77.01 E-value=0.72 Score=50.13 Aligned_cols=21 Identities=29% Similarity=0.313 Sum_probs=17.4
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
+.|..+++.|++|||||||..
T Consensus 258 ~~g~~i~I~GptGSGKTTlL~ 278 (511)
T 2oap_1 258 EHKFSAIVVGETASGKTTTLN 278 (511)
T ss_dssp HTTCCEEEEESTTSSHHHHHH
T ss_pred hCCCEEEEECCCCCCHHHHHH
Confidence 346679999999999999654
No 328
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=76.97 E-value=0.78 Score=41.32 Aligned_cols=18 Identities=28% Similarity=0.573 Sum_probs=15.7
Q ss_pred CEEEEEecCCCCcccccc
Q 008523 335 DVALFFGLSGTGKTTLST 352 (563)
Q Consensus 335 ~valfFGLSGTGKTTLsa 352 (563)
..++|+|.+|+|||||..
T Consensus 15 ~ki~v~G~~~~GKSsli~ 32 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTL 32 (206)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred EEEEEECCCCCCHHHHHH
Confidence 359999999999999765
No 329
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=76.89 E-value=0.79 Score=40.15 Aligned_cols=17 Identities=35% Similarity=0.554 Sum_probs=15.3
Q ss_pred EEEEEecCCCCcccccc
Q 008523 336 VALFFGLSGTGKTTLST 352 (563)
Q Consensus 336 valfFGLSGTGKTTLsa 352 (563)
.+++.|++|+|||||..
T Consensus 8 ki~v~G~~~~GKssl~~ 24 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTT 24 (178)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECcCCCCHHHHHH
Confidence 59999999999999865
No 330
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=76.89 E-value=0.72 Score=47.04 Aligned_cols=21 Identities=38% Similarity=0.385 Sum_probs=18.6
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
+.|..++++|.+|+|||||+.
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~ 140 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSH 140 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHH
Confidence 457899999999999999875
No 331
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=76.88 E-value=0.84 Score=40.30 Aligned_cols=17 Identities=24% Similarity=0.468 Sum_probs=15.2
Q ss_pred EEEEEecCCCCcccccc
Q 008523 336 VALFFGLSGTGKTTLST 352 (563)
Q Consensus 336 valfFGLSGTGKTTLsa 352 (563)
.++|+|.+|+|||||..
T Consensus 8 ki~~~G~~~~GKSsli~ 24 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTI 24 (181)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECcCCCCHHHHHH
Confidence 58999999999999854
No 332
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=76.84 E-value=0.7 Score=49.47 Aligned_cols=18 Identities=44% Similarity=0.711 Sum_probs=16.0
Q ss_pred CEEEEEecCCCCcccccc
Q 008523 335 DVALFFGLSGTGKTTLST 352 (563)
Q Consensus 335 ~valfFGLSGTGKTTLsa 352 (563)
+.+||+|++|||||+|+.
T Consensus 216 rGvLL~GPPGtGKTllAk 233 (437)
T 4b4t_L 216 KGVLLYGPPGTGKTLLAK 233 (437)
T ss_dssp CEEEEESCTTSSHHHHHH
T ss_pred CeEEEECCCCCcHHHHHH
Confidence 569999999999999875
No 333
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=76.80 E-value=0.73 Score=40.56 Aligned_cols=17 Identities=29% Similarity=0.343 Sum_probs=15.2
Q ss_pred EEEEEecCCCCcccccc
Q 008523 336 VALFFGLSGTGKTTLST 352 (563)
Q Consensus 336 valfFGLSGTGKTTLsa 352 (563)
.+++.|.+|+|||||..
T Consensus 7 ~i~~~G~~~~GKssl~~ 23 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLI 23 (186)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58999999999999864
No 334
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=76.74 E-value=0.8 Score=39.91 Aligned_cols=18 Identities=28% Similarity=0.309 Sum_probs=15.8
Q ss_pred CEEEEEecCCCCcccccc
Q 008523 335 DVALFFGLSGTGKTTLST 352 (563)
Q Consensus 335 ~valfFGLSGTGKTTLsa 352 (563)
..+++.|.+|+|||||..
T Consensus 16 ~~i~v~G~~~~GKSsli~ 33 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLH 33 (179)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 359999999999999765
No 335
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=76.71 E-value=0.73 Score=43.96 Aligned_cols=17 Identities=35% Similarity=0.694 Sum_probs=15.1
Q ss_pred EEEEEecCCCCcccccc
Q 008523 336 VALFFGLSGTGKTTLST 352 (563)
Q Consensus 336 valfFGLSGTGKTTLsa 352 (563)
.++|+|+.|+||+|++.
T Consensus 2 ~Iil~GpPGsGKgTqa~ 18 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAK 18 (206)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999999776
No 336
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=76.66 E-value=0.7 Score=49.30 Aligned_cols=46 Identities=20% Similarity=0.264 Sum_probs=26.7
Q ss_pred hhHHHHHHHHHHhcccCceeeecccceecCCCCEEEEEecCCCCcccccc
Q 008523 303 EMKKGLFSVMHYLMPKRQILSLHSGCNMGKDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 303 EiKK~iltl~n~~l~~~G~L~mH~sanvg~~G~valfFGLSGTGKTTLsa 352 (563)
+.|+.+.....+-+....+..-+| . +--+.++|+|++|||||+|+.
T Consensus 179 ~~k~~l~e~v~~pl~~p~~~~~~g-~---~~prGiLL~GPPGtGKT~lak 224 (428)
T 4b4t_K 179 MQKQEIREAVELPLVQADLYEQIG-I---DPPRGVLLYGPPGTGKTMLVK 224 (428)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHC-C---CCCCEEEEESCTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHhCHHHHHhCC-C---CCCceEEEECCCCCCHHHHHH
Confidence 577776665543232222211111 1 123569999999999999875
No 337
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=76.66 E-value=0.74 Score=48.62 Aligned_cols=19 Identities=42% Similarity=0.579 Sum_probs=16.7
Q ss_pred CCEEEEEecCCCCcccccc
Q 008523 334 GDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 334 G~valfFGLSGTGKTTLsa 352 (563)
...++|+|++|||||+|+.
T Consensus 167 ~~~vLL~GppGtGKT~lA~ 185 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAK 185 (444)
T ss_dssp CSEEEEECSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 3679999999999999875
No 338
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=76.65 E-value=0.85 Score=40.97 Aligned_cols=19 Identities=42% Similarity=0.534 Sum_probs=16.4
Q ss_pred CCEEEEEecCCCCcccccc
Q 008523 334 GDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 334 G~valfFGLSGTGKTTLsa 352 (563)
...+++.|++|+|||||..
T Consensus 16 ~~ki~ivG~~~vGKSsL~~ 34 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLK 34 (181)
T ss_dssp CEEEEEEESTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 3469999999999999765
No 339
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=76.65 E-value=0.71 Score=47.76 Aligned_cols=19 Identities=26% Similarity=0.372 Sum_probs=16.6
Q ss_pred CCEEEEEecCCCCcccccc
Q 008523 334 GDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 334 G~valfFGLSGTGKTTLsa 352 (563)
+..+++.|+||+|||||+.
T Consensus 3 ~~~i~i~GptgsGKt~la~ 21 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSV 21 (322)
T ss_dssp CEEEEEECCTTSCHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHH
Confidence 3478999999999999876
No 340
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=76.63 E-value=0.8 Score=40.22 Aligned_cols=17 Identities=29% Similarity=0.515 Sum_probs=15.2
Q ss_pred EEEEEecCCCCcccccc
Q 008523 336 VALFFGLSGTGKTTLST 352 (563)
Q Consensus 336 valfFGLSGTGKTTLsa 352 (563)
.++++|.+|+|||||..
T Consensus 14 ki~v~G~~~~GKSsli~ 30 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVL 30 (181)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECcCCCCHHHHHH
Confidence 59999999999999864
No 341
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=76.53 E-value=1.1 Score=48.77 Aligned_cols=19 Identities=37% Similarity=0.550 Sum_probs=16.6
Q ss_pred CCEEEEEecCCCCcccccc
Q 008523 334 GDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 334 G~valfFGLSGTGKTTLsa 352 (563)
..++++.|++|+||||++.
T Consensus 35 ~~lIvlvGlpGSGKSTia~ 53 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISK 53 (520)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3579999999999999876
No 342
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=76.52 E-value=0.81 Score=50.77 Aligned_cols=21 Identities=38% Similarity=0.618 Sum_probs=18.8
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
..|..+++.|++|+|||||..
T Consensus 380 ~~Gei~~i~G~NGsGKSTLlk 400 (607)
T 3bk7_A 380 RKGEVIGIVGPNGIGKTTFVK 400 (607)
T ss_dssp ETTCEEEEECCTTSSHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 568999999999999999765
No 343
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=76.49 E-value=0.87 Score=40.27 Aligned_cols=17 Identities=41% Similarity=0.536 Sum_probs=15.4
Q ss_pred EEEEEecCCCCcccccc
Q 008523 336 VALFFGLSGTGKTTLST 352 (563)
Q Consensus 336 valfFGLSGTGKTTLsa 352 (563)
.+++.|.+|+|||||..
T Consensus 12 ki~v~G~~~~GKSsli~ 28 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLH 28 (186)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 59999999999999765
No 344
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=76.45 E-value=0.82 Score=46.68 Aligned_cols=21 Identities=24% Similarity=0.223 Sum_probs=18.4
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
..|..+.+.|.+|+|||||..
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~ 73 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTID 73 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHH
Confidence 467899999999999999765
No 345
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=76.32 E-value=0.47 Score=47.16 Aligned_cols=19 Identities=32% Similarity=0.394 Sum_probs=16.4
Q ss_pred CCEEEEEecCCCCcccccc
Q 008523 334 GDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 334 G~valfFGLSGTGKTTLsa 352 (563)
|..++|.|++|||||+|+.
T Consensus 46 ~~~vll~G~pGtGKT~la~ 64 (331)
T 2r44_A 46 GGHILLEGVPGLAKTLSVN 64 (331)
T ss_dssp TCCEEEESCCCHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 3579999999999999875
No 346
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=76.08 E-value=0.82 Score=41.01 Aligned_cols=17 Identities=41% Similarity=0.628 Sum_probs=15.4
Q ss_pred EEEEEecCCCCcccccc
Q 008523 336 VALFFGLSGTGKTTLST 352 (563)
Q Consensus 336 valfFGLSGTGKTTLsa 352 (563)
.++|+|.+|+|||||..
T Consensus 27 ki~v~G~~~~GKSsLi~ 43 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLS 43 (193)
T ss_dssp EEEEESSTTSSHHHHHH
T ss_pred EEEEECcCCCCHHHHHH
Confidence 59999999999999765
No 347
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=76.07 E-value=0.85 Score=40.33 Aligned_cols=18 Identities=28% Similarity=0.422 Sum_probs=15.7
Q ss_pred CEEEEEecCCCCcccccc
Q 008523 335 DVALFFGLSGTGKTTLST 352 (563)
Q Consensus 335 ~valfFGLSGTGKTTLsa 352 (563)
..++|+|.+|+|||||..
T Consensus 19 ~ki~v~G~~~~GKSsl~~ 36 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTI 36 (183)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 358999999999999865
No 348
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=75.99 E-value=0.76 Score=47.34 Aligned_cols=18 Identities=28% Similarity=0.517 Sum_probs=16.1
Q ss_pred CEEEEEecCCCCcccccc
Q 008523 335 DVALFFGLSGTGKTTLST 352 (563)
Q Consensus 335 ~valfFGLSGTGKTTLsa 352 (563)
..+++.|++|||||||+.
T Consensus 6 ~~i~i~GptGsGKTtla~ 23 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAM 23 (323)
T ss_dssp EEEEEECCTTSCHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 478999999999999875
No 349
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=75.97 E-value=0.86 Score=40.41 Aligned_cols=17 Identities=29% Similarity=0.415 Sum_probs=15.3
Q ss_pred EEEEEecCCCCcccccc
Q 008523 336 VALFFGLSGTGKTTLST 352 (563)
Q Consensus 336 valfFGLSGTGKTTLsa 352 (563)
.+++.|.+|+|||||..
T Consensus 16 ki~vvG~~~~GKssL~~ 32 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLK 32 (198)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 59999999999999864
No 350
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=75.85 E-value=0.86 Score=40.78 Aligned_cols=18 Identities=33% Similarity=0.492 Sum_probs=16.1
Q ss_pred CEEEEEecCCCCcccccc
Q 008523 335 DVALFFGLSGTGKTTLST 352 (563)
Q Consensus 335 ~valfFGLSGTGKTTLsa 352 (563)
..++|+|.+|+|||||..
T Consensus 18 ~ki~v~G~~~~GKSsl~~ 35 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIIN 35 (199)
T ss_dssp EEEEEECCTTSCHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 469999999999999865
No 351
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=75.67 E-value=0.79 Score=47.57 Aligned_cols=18 Identities=33% Similarity=0.464 Sum_probs=16.3
Q ss_pred CEEEEEecCCCCcccccc
Q 008523 335 DVALFFGLSGTGKTTLST 352 (563)
Q Consensus 335 ~valfFGLSGTGKTTLsa 352 (563)
.++++.|+||+|||||+.
T Consensus 8 ~lI~I~GptgSGKTtla~ 25 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSI 25 (340)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred ceEEEECCCcCcHHHHHH
Confidence 479999999999999886
No 352
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=75.64 E-value=0.86 Score=41.74 Aligned_cols=18 Identities=44% Similarity=0.676 Sum_probs=15.7
Q ss_pred CEEEEEecCCCCcccccc
Q 008523 335 DVALFFGLSGTGKTTLST 352 (563)
Q Consensus 335 ~valfFGLSGTGKTTLsa 352 (563)
..+++.|++|+|||||..
T Consensus 26 ~ki~lvG~~~vGKSsLi~ 43 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLH 43 (198)
T ss_dssp EEEEEEEETTSSHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 368999999999999765
No 353
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=75.63 E-value=0.73 Score=48.66 Aligned_cols=19 Identities=32% Similarity=0.417 Sum_probs=16.6
Q ss_pred CCEEEEEecCCCCcccccc
Q 008523 334 GDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 334 G~valfFGLSGTGKTTLsa 352 (563)
...++|+|++|||||||+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~ 148 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQ 148 (440)
T ss_dssp SCCEEEECSSSSSHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4569999999999999875
No 354
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=75.60 E-value=0.9 Score=39.94 Aligned_cols=18 Identities=28% Similarity=0.211 Sum_probs=15.8
Q ss_pred CEEEEEecCCCCcccccc
Q 008523 335 DVALFFGLSGTGKTTLST 352 (563)
Q Consensus 335 ~valfFGLSGTGKTTLsa 352 (563)
-.+++.|.+|+|||||..
T Consensus 9 ~ki~v~G~~~~GKssl~~ 26 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLI 26 (182)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred EEEEEECCCCCCHHHHHH
Confidence 469999999999999764
No 355
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=75.47 E-value=0.85 Score=45.51 Aligned_cols=21 Identities=33% Similarity=0.544 Sum_probs=18.4
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
+.|..++++|.+|+|||||+.
T Consensus 96 ~~g~i~~i~G~~gsGKT~la~ 116 (322)
T 2i1q_A 96 ESQSVTEFAGVFGSGKTQIMH 116 (322)
T ss_dssp ETTEEEEEEESTTSSHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHH
Confidence 457889999999999999876
No 356
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=75.38 E-value=0.9 Score=41.59 Aligned_cols=17 Identities=41% Similarity=0.661 Sum_probs=15.5
Q ss_pred EEEEEecCCCCcccccc
Q 008523 336 VALFFGLSGTGKTTLST 352 (563)
Q Consensus 336 valfFGLSGTGKTTLsa 352 (563)
.++|.|++|+|||||..
T Consensus 25 ki~vvG~~~vGKSsLi~ 41 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAG 41 (195)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 59999999999999865
No 357
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=75.32 E-value=0.97 Score=40.53 Aligned_cols=19 Identities=37% Similarity=0.508 Sum_probs=16.3
Q ss_pred CCEEEEEecCCCCcccccc
Q 008523 334 GDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 334 G~valfFGLSGTGKTTLsa 352 (563)
.-.++|+|.+|+|||||..
T Consensus 21 ~~ki~v~G~~~~GKSsli~ 39 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIIN 39 (190)
T ss_dssp CEEEEEEECTTSSHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHH
Confidence 3469999999999999765
No 358
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=75.29 E-value=0.87 Score=45.65 Aligned_cols=17 Identities=41% Similarity=0.581 Sum_probs=15.0
Q ss_pred EEEEEecCCCCcccccc
Q 008523 336 VALFFGLSGTGKTTLST 352 (563)
Q Consensus 336 valfFGLSGTGKTTLsa 352 (563)
.+++.|+||+|||||..
T Consensus 20 ~I~lvG~nG~GKSTLl~ 36 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLIN 36 (301)
T ss_dssp EEEEEEETTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47999999999999765
No 359
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=75.28 E-value=0.92 Score=40.66 Aligned_cols=18 Identities=33% Similarity=0.325 Sum_probs=15.8
Q ss_pred CEEEEEecCCCCcccccc
Q 008523 335 DVALFFGLSGTGKTTLST 352 (563)
Q Consensus 335 ~valfFGLSGTGKTTLsa 352 (563)
..++|+|.+|+|||||..
T Consensus 21 ~ki~v~G~~~~GKSsli~ 38 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTY 38 (189)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred EEEEEECCCCCCHHHHHH
Confidence 359999999999999865
No 360
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=75.27 E-value=0.9 Score=42.99 Aligned_cols=18 Identities=22% Similarity=0.405 Sum_probs=15.8
Q ss_pred CEEEEEecCCCCcccccc
Q 008523 335 DVALFFGLSGTGKTTLST 352 (563)
Q Consensus 335 ~valfFGLSGTGKTTLsa 352 (563)
..++++|.+|+|||||..
T Consensus 30 ~~i~lvG~~g~GKStlin 47 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGN 47 (239)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 359999999999999765
No 361
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=75.21 E-value=0.9 Score=49.27 Aligned_cols=18 Identities=33% Similarity=0.370 Sum_probs=16.3
Q ss_pred CEEEEEecCCCCcccccc
Q 008523 335 DVALFFGLSGTGKTTLST 352 (563)
Q Consensus 335 ~valfFGLSGTGKTTLsa 352 (563)
.++++.|+||+|||||..
T Consensus 30 e~~~liG~nGsGKSTLl~ 47 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMA 47 (483)
T ss_dssp SEEEEECCTTSSHHHHHH
T ss_pred ceEEEECCCCCcHHHHHH
Confidence 899999999999999754
No 362
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=75.06 E-value=0.94 Score=40.42 Aligned_cols=17 Identities=41% Similarity=0.528 Sum_probs=15.4
Q ss_pred EEEEEecCCCCcccccc
Q 008523 336 VALFFGLSGTGKTTLST 352 (563)
Q Consensus 336 valfFGLSGTGKTTLsa 352 (563)
.++|+|.+|+|||||..
T Consensus 18 ki~v~G~~~~GKSsli~ 34 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLL 34 (196)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECcCCCCHHHHHH
Confidence 59999999999999765
No 363
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=75.03 E-value=0.92 Score=40.56 Aligned_cols=17 Identities=35% Similarity=0.341 Sum_probs=15.3
Q ss_pred EEEEEecCCCCcccccc
Q 008523 336 VALFFGLSGTGKTTLST 352 (563)
Q Consensus 336 valfFGLSGTGKTTLsa 352 (563)
.++++|.+|+|||||..
T Consensus 9 ki~v~G~~~vGKSsli~ 25 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLH 25 (184)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58999999999999865
No 364
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=75.03 E-value=0.75 Score=48.88 Aligned_cols=18 Identities=39% Similarity=0.684 Sum_probs=15.7
Q ss_pred CEEEEEecCCCCcccccc
Q 008523 335 DVALFFGLSGTGKTTLST 352 (563)
Q Consensus 335 ~valfFGLSGTGKTTLsa 352 (563)
+.+||+|++|||||.|+.
T Consensus 183 rGvLL~GPPGTGKTllAk 200 (405)
T 4b4t_J 183 KGVILYGPPGTGKTLLAR 200 (405)
T ss_dssp CCEEEESCSSSSHHHHHH
T ss_pred CceEEeCCCCCCHHHHHH
Confidence 459999999999999875
No 365
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=74.96 E-value=1.2 Score=40.36 Aligned_cols=17 Identities=41% Similarity=0.528 Sum_probs=15.5
Q ss_pred EEEEEecCCCCcccccc
Q 008523 336 VALFFGLSGTGKTTLST 352 (563)
Q Consensus 336 valfFGLSGTGKTTLsa 352 (563)
.++|+|.+|+|||||..
T Consensus 35 ki~vvG~~~~GKSsli~ 51 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLL 51 (199)
T ss_dssp EEEEECCTTSCCTTTTT
T ss_pred EEEEECCCCCCHHHHHH
Confidence 59999999999999865
No 366
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=74.90 E-value=0.93 Score=40.79 Aligned_cols=17 Identities=35% Similarity=0.409 Sum_probs=15.4
Q ss_pred EEEEEecCCCCcccccc
Q 008523 336 VALFFGLSGTGKTTLST 352 (563)
Q Consensus 336 valfFGLSGTGKTTLsa 352 (563)
.++|+|.+|+|||||..
T Consensus 25 ki~v~G~~~~GKSsli~ 41 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLF 41 (191)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCcCHHHHHH
Confidence 59999999999999765
No 367
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=74.72 E-value=0.97 Score=39.95 Aligned_cols=18 Identities=22% Similarity=0.401 Sum_probs=15.7
Q ss_pred CEEEEEecCCCCcccccc
Q 008523 335 DVALFFGLSGTGKTTLST 352 (563)
Q Consensus 335 ~valfFGLSGTGKTTLsa 352 (563)
-.++|.|.+|+|||||..
T Consensus 8 ~ki~v~G~~~~GKSsli~ 25 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVL 25 (208)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 359999999999999765
No 368
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=74.66 E-value=1 Score=41.66 Aligned_cols=18 Identities=39% Similarity=0.451 Sum_probs=15.8
Q ss_pred CEEEEEecCCCCcccccc
Q 008523 335 DVALFFGLSGTGKTTLST 352 (563)
Q Consensus 335 ~valfFGLSGTGKTTLsa 352 (563)
..++|.|.+|+|||||..
T Consensus 39 ~~i~ivG~~gvGKTtl~~ 56 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIE 56 (226)
T ss_dssp EEEEEEESTTSSHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHH
Confidence 468899999999999875
No 369
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=74.59 E-value=1 Score=41.51 Aligned_cols=18 Identities=33% Similarity=0.403 Sum_probs=15.9
Q ss_pred CEEEEEecCCCCcccccc
Q 008523 335 DVALFFGLSGTGKTTLST 352 (563)
Q Consensus 335 ~valfFGLSGTGKTTLsa 352 (563)
.+++|.|.+|+|||||..
T Consensus 31 ~~i~i~G~~g~GKTTl~~ 48 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIE 48 (221)
T ss_dssp EEEEEEECTTSCHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHH
Confidence 479999999999999765
No 370
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=74.31 E-value=1.1 Score=47.61 Aligned_cols=18 Identities=22% Similarity=0.326 Sum_probs=15.9
Q ss_pred CEEEEEecCCCCcccccc
Q 008523 335 DVALFFGLSGTGKTTLST 352 (563)
Q Consensus 335 ~valfFGLSGTGKTTLsa 352 (563)
-.++|.|.||+|||||..
T Consensus 70 ~~valvG~nGaGKSTLln 87 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFIN 87 (413)
T ss_dssp EEEEEEECTTSSHHHHHH
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 379999999999999765
No 371
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=74.29 E-value=0.82 Score=44.41 Aligned_cols=17 Identities=47% Similarity=0.593 Sum_probs=15.3
Q ss_pred EEEEEecCCCCcccccc
Q 008523 336 VALFFGLSGTGKTTLST 352 (563)
Q Consensus 336 valfFGLSGTGKTTLsa 352 (563)
.++|.|++||||||++.
T Consensus 48 ~~ll~G~~G~GKT~la~ 64 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAAL 64 (327)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred eEEEECcCCCCHHHHHH
Confidence 49999999999999875
No 372
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=74.22 E-value=0.93 Score=40.94 Aligned_cols=18 Identities=28% Similarity=0.451 Sum_probs=15.8
Q ss_pred CEEEEEecCCCCcccccc
Q 008523 335 DVALFFGLSGTGKTTLST 352 (563)
Q Consensus 335 ~valfFGLSGTGKTTLsa 352 (563)
-.++++|++|+|||||..
T Consensus 22 ~ki~vvG~~~vGKTsLi~ 39 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTV 39 (187)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred EEEEEECCCCCcHHHHHH
Confidence 359999999999999865
No 373
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=74.19 E-value=0.85 Score=52.09 Aligned_cols=21 Identities=38% Similarity=0.574 Sum_probs=18.1
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
..+..++|.|+||||||||+.
T Consensus 236 ~~~~~vLL~Gp~GtGKTtLar 256 (806)
T 1ypw_A 236 KPPRGILLYGPPGTGKTLIAR 256 (806)
T ss_dssp CCCCEEEECSCTTSSHHHHHH
T ss_pred CCCCeEEEECcCCCCHHHHHH
Confidence 446789999999999999875
No 374
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=74.16 E-value=1 Score=40.03 Aligned_cols=19 Identities=37% Similarity=0.480 Sum_probs=16.5
Q ss_pred CCEEEEEecCCCCcccccc
Q 008523 334 GDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 334 G~valfFGLSGTGKTTLsa 352 (563)
...++++|++|+|||||..
T Consensus 18 ~~~i~v~G~~~~GKssl~~ 36 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILK 36 (186)
T ss_dssp CEEEEEECSTTSSHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHH
Confidence 4569999999999999765
No 375
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=74.00 E-value=1 Score=40.31 Aligned_cols=17 Identities=35% Similarity=0.428 Sum_probs=15.4
Q ss_pred EEEEEecCCCCcccccc
Q 008523 336 VALFFGLSGTGKTTLST 352 (563)
Q Consensus 336 valfFGLSGTGKTTLsa 352 (563)
.++|+|.+|+|||||..
T Consensus 24 ki~vvG~~~~GKSsli~ 40 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLF 40 (189)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 59999999999999765
No 376
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=73.93 E-value=1.2 Score=39.71 Aligned_cols=18 Identities=33% Similarity=0.577 Sum_probs=15.8
Q ss_pred CEEEEEecCCCCcccccc
Q 008523 335 DVALFFGLSGTGKTTLST 352 (563)
Q Consensus 335 ~valfFGLSGTGKTTLsa 352 (563)
..++++|.+|+|||||..
T Consensus 9 ~ki~vvG~~~~GKSsli~ 26 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVL 26 (199)
T ss_dssp EEEEEEECTTSSHHHHHH
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 469999999999999764
No 377
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=73.92 E-value=0.7 Score=49.39 Aligned_cols=20 Identities=30% Similarity=0.456 Sum_probs=17.7
Q ss_pred CCCEEEEEecCCCCcccccc
Q 008523 333 DGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 333 ~G~valfFGLSGTGKTTLsa 352 (563)
.+.+++|.|++|+||||+++
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~ 115 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAG 115 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 46789999999999999776
No 378
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=73.92 E-value=1.1 Score=40.03 Aligned_cols=18 Identities=33% Similarity=0.527 Sum_probs=16.0
Q ss_pred CEEEEEecCCCCcccccc
Q 008523 335 DVALFFGLSGTGKTTLST 352 (563)
Q Consensus 335 ~valfFGLSGTGKTTLsa 352 (563)
-.+++.|++|+|||||..
T Consensus 17 ~~i~v~G~~~~GKssl~~ 34 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILY 34 (187)
T ss_dssp EEEEEEESTTSSHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 469999999999999865
No 379
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=73.89 E-value=0.85 Score=44.12 Aligned_cols=16 Identities=50% Similarity=0.686 Sum_probs=14.8
Q ss_pred EEEEecCCCCcccccc
Q 008523 337 ALFFGLSGTGKTTLST 352 (563)
Q Consensus 337 alfFGLSGTGKTTLsa 352 (563)
++|.|++||||||++.
T Consensus 41 ~ll~G~~G~GKt~la~ 56 (319)
T 2chq_A 41 LLFSGPPGTGKTATAI 56 (319)
T ss_dssp EEEESSSSSSHHHHHH
T ss_pred EEEECcCCcCHHHHHH
Confidence 8999999999999775
No 380
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=73.87 E-value=1 Score=40.13 Aligned_cols=18 Identities=33% Similarity=0.527 Sum_probs=16.0
Q ss_pred CEEEEEecCCCCcccccc
Q 008523 335 DVALFFGLSGTGKTTLST 352 (563)
Q Consensus 335 ~valfFGLSGTGKTTLsa 352 (563)
..++++|.+|+|||||..
T Consensus 22 ~~i~v~G~~~~GKSsli~ 39 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILY 39 (181)
T ss_dssp EEEEEEEETTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 469999999999999865
No 381
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=73.79 E-value=0.84 Score=45.72 Aligned_cols=20 Identities=40% Similarity=0.705 Sum_probs=17.8
Q ss_pred CCCEEEEEecCCCCcccccc
Q 008523 333 DGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 333 ~G~valfFGLSGTGKTTLsa 352 (563)
.|.+++|.|.+|+||||++.
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~ 116 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAA 116 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 67889999999999999776
No 382
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=73.77 E-value=1.1 Score=40.60 Aligned_cols=20 Identities=45% Similarity=0.630 Sum_probs=16.0
Q ss_pred CCCEEEEEecCCCCcccccc
Q 008523 333 DGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 333 ~G~valfFGLSGTGKTTLsa 352 (563)
....+++.|++|+|||||..
T Consensus 22 ~~~ki~~vG~~~vGKSsli~ 41 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLH 41 (190)
T ss_dssp --CEEEEEESTTSSHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHH
Confidence 34479999999999999765
No 383
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=73.75 E-value=1 Score=41.11 Aligned_cols=18 Identities=44% Similarity=0.658 Sum_probs=16.0
Q ss_pred CEEEEEecCCCCcccccc
Q 008523 335 DVALFFGLSGTGKTTLST 352 (563)
Q Consensus 335 ~valfFGLSGTGKTTLsa 352 (563)
..+++.|.+|+|||||..
T Consensus 8 ~ki~vvG~~~~GKTsli~ 25 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFV 25 (214)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 469999999999999775
No 384
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=73.75 E-value=0.94 Score=48.45 Aligned_cols=20 Identities=30% Similarity=0.376 Sum_probs=17.7
Q ss_pred CCCEEEEEecCCCCcccccc
Q 008523 333 DGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 333 ~G~valfFGLSGTGKTTLsa 352 (563)
.|..+++||+||+|||||..
T Consensus 173 rGQr~~IvG~sG~GKTtLl~ 192 (422)
T 3ice_A 173 RGQRGLIVAPPKAGKTMLLQ 192 (422)
T ss_dssp TTCEEEEECCSSSSHHHHHH
T ss_pred CCcEEEEecCCCCChhHHHH
Confidence 36689999999999999875
No 385
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=73.68 E-value=1.1 Score=40.60 Aligned_cols=18 Identities=28% Similarity=0.573 Sum_probs=15.7
Q ss_pred CEEEEEecCCCCcccccc
Q 008523 335 DVALFFGLSGTGKTTLST 352 (563)
Q Consensus 335 ~valfFGLSGTGKTTLsa 352 (563)
..+++.|++|+|||||..
T Consensus 21 ~ki~~vG~~~vGKTsLi~ 38 (196)
T 3llu_A 21 PRILLMGLRRSGKSSIQK 38 (196)
T ss_dssp CEEEEEESTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 469999999999999843
No 386
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=73.52 E-value=1.2 Score=42.37 Aligned_cols=20 Identities=35% Similarity=0.521 Sum_probs=17.1
Q ss_pred CCCCEEEEEecCCCCccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLS 351 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLs 351 (563)
..|+.+++.|.+||||||+.
T Consensus 74 ~~g~~~~i~g~TGsGKTt~~ 93 (235)
T 3llm_A 74 SQNSVVIIRGATGCGKTTQV 93 (235)
T ss_dssp HHCSEEEEECCTTSSHHHHH
T ss_pred hcCCEEEEEeCCCCCcHHhH
Confidence 35789999999999999843
No 387
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=73.49 E-value=1.1 Score=40.63 Aligned_cols=18 Identities=28% Similarity=0.481 Sum_probs=15.8
Q ss_pred CEEEEEecCCCCcccccc
Q 008523 335 DVALFFGLSGTGKTTLST 352 (563)
Q Consensus 335 ~valfFGLSGTGKTTLsa 352 (563)
..++|+|.+|+|||||..
T Consensus 25 ~ki~vvG~~~~GKSsli~ 42 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAH 42 (201)
T ss_dssp EEEEEEESTTSSHHHHHH
T ss_pred EEEEEECCCCcCHHHHHH
Confidence 359999999999999765
No 388
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=73.48 E-value=1.1 Score=40.32 Aligned_cols=17 Identities=24% Similarity=0.505 Sum_probs=15.4
Q ss_pred EEEEEecCCCCcccccc
Q 008523 336 VALFFGLSGTGKTTLST 352 (563)
Q Consensus 336 valfFGLSGTGKTTLsa 352 (563)
.++++|.+|+|||||..
T Consensus 25 ki~vvG~~~~GKSsli~ 41 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVC 41 (192)
T ss_dssp EEEEEECTTSSHHHHHH
T ss_pred EEEEECcCCCCHHHHHH
Confidence 59999999999999765
No 389
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=73.33 E-value=1.1 Score=40.53 Aligned_cols=17 Identities=35% Similarity=0.417 Sum_probs=15.3
Q ss_pred EEEEEecCCCCcccccc
Q 008523 336 VALFFGLSGTGKTTLST 352 (563)
Q Consensus 336 valfFGLSGTGKTTLsa 352 (563)
.++|+|.+|+|||||..
T Consensus 10 ki~v~G~~~~GKSsli~ 26 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLF 26 (203)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 59999999999999765
No 390
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=73.21 E-value=0.99 Score=46.55 Aligned_cols=19 Identities=26% Similarity=0.510 Sum_probs=16.8
Q ss_pred CCEEEEEecCCCCcccccc
Q 008523 334 GDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 334 G~valfFGLSGTGKTTLsa 352 (563)
...+++.|+||+|||||+.
T Consensus 10 ~~~i~i~GptgsGKt~la~ 28 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAI 28 (316)
T ss_dssp CEEEEEECCTTSCHHHHHH
T ss_pred CcEEEEECCCccCHHHHHH
Confidence 3578999999999999887
No 391
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=73.08 E-value=1.1 Score=40.40 Aligned_cols=18 Identities=39% Similarity=0.529 Sum_probs=15.7
Q ss_pred CEEEEEecCCCCcccccc
Q 008523 335 DVALFFGLSGTGKTTLST 352 (563)
Q Consensus 335 ~valfFGLSGTGKTTLsa 352 (563)
..++++|.+|+|||||..
T Consensus 9 ~ki~v~G~~~~GKSsli~ 26 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMN 26 (207)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred eEEEEECcCCCCHHHHHH
Confidence 359999999999999765
No 392
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=73.03 E-value=1.1 Score=40.32 Aligned_cols=17 Identities=29% Similarity=0.452 Sum_probs=15.4
Q ss_pred EEEEEecCCCCcccccc
Q 008523 336 VALFFGLSGTGKTTLST 352 (563)
Q Consensus 336 valfFGLSGTGKTTLsa 352 (563)
.+++.|.+|+|||||..
T Consensus 23 ki~v~G~~~~GKSsli~ 39 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLL 39 (191)
T ss_dssp EEEEESSTTSSHHHHHH
T ss_pred EEEEECcCCCCHHHHHH
Confidence 59999999999999865
No 393
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=72.99 E-value=1.2 Score=40.47 Aligned_cols=17 Identities=41% Similarity=0.548 Sum_probs=15.3
Q ss_pred EEEEEecCCCCcccccc
Q 008523 336 VALFFGLSGTGKTTLST 352 (563)
Q Consensus 336 valfFGLSGTGKTTLsa 352 (563)
.++|.|.+|+|||||..
T Consensus 10 ki~v~G~~~~GKSsli~ 26 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLL 26 (206)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 59999999999999765
No 394
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=72.94 E-value=1.1 Score=40.22 Aligned_cols=18 Identities=28% Similarity=0.213 Sum_probs=15.8
Q ss_pred CEEEEEecCCCCcccccc
Q 008523 335 DVALFFGLSGTGKTTLST 352 (563)
Q Consensus 335 ~valfFGLSGTGKTTLsa 352 (563)
-.++++|.+|+|||||..
T Consensus 24 ~ki~~vG~~~~GKSsl~~ 41 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLL 41 (194)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECcCCCCHHHHHH
Confidence 359999999999999765
No 395
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=72.92 E-value=1.1 Score=40.44 Aligned_cols=17 Identities=35% Similarity=0.601 Sum_probs=15.3
Q ss_pred EEEEEecCCCCcccccc
Q 008523 336 VALFFGLSGTGKTTLST 352 (563)
Q Consensus 336 valfFGLSGTGKTTLsa 352 (563)
.+++.|.+|+|||||..
T Consensus 28 ki~vvG~~~~GKSsLi~ 44 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLME 44 (192)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 59999999999999765
No 396
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=72.83 E-value=0.82 Score=40.25 Aligned_cols=17 Identities=24% Similarity=0.264 Sum_probs=15.4
Q ss_pred EEEEEecCCCCcccccc
Q 008523 336 VALFFGLSGTGKTTLST 352 (563)
Q Consensus 336 valfFGLSGTGKTTLsa 352 (563)
.+++.|++|+|||||..
T Consensus 9 ki~~vG~~~vGKTsli~ 25 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIH 25 (178)
T ss_dssp EEEEECCGGGCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58999999999999865
No 397
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=72.79 E-value=1.1 Score=40.36 Aligned_cols=18 Identities=33% Similarity=0.519 Sum_probs=15.9
Q ss_pred CEEEEEecCCCCcccccc
Q 008523 335 DVALFFGLSGTGKTTLST 352 (563)
Q Consensus 335 ~valfFGLSGTGKTTLsa 352 (563)
..++++|.+|+|||||..
T Consensus 29 ~ki~v~G~~~vGKSsli~ 46 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVV 46 (196)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 469999999999999765
No 398
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=72.78 E-value=1.2 Score=40.61 Aligned_cols=17 Identities=41% Similarity=0.554 Sum_probs=15.4
Q ss_pred EEEEEecCCCCcccccc
Q 008523 336 VALFFGLSGTGKTTLST 352 (563)
Q Consensus 336 valfFGLSGTGKTTLsa 352 (563)
.++|.|.+|+|||||..
T Consensus 27 ki~v~G~~~~GKSsLi~ 43 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLH 43 (200)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECcCCCCHHHHHH
Confidence 59999999999999865
No 399
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=72.74 E-value=1.2 Score=39.67 Aligned_cols=17 Identities=41% Similarity=0.579 Sum_probs=15.4
Q ss_pred EEEEEecCCCCcccccc
Q 008523 336 VALFFGLSGTGKTTLST 352 (563)
Q Consensus 336 valfFGLSGTGKTTLsa 352 (563)
.++++|.+|+|||||..
T Consensus 17 ~i~v~G~~~~GKssli~ 33 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLL 33 (195)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 59999999999999765
No 400
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=72.71 E-value=0.91 Score=40.81 Aligned_cols=18 Identities=22% Similarity=0.254 Sum_probs=4.8
Q ss_pred CEEEEEecCCCCcccccc
Q 008523 335 DVALFFGLSGTGKTTLST 352 (563)
Q Consensus 335 ~valfFGLSGTGKTTLsa 352 (563)
-.++|+|.+|+|||||..
T Consensus 21 ~~i~v~G~~~~GKssli~ 38 (208)
T 2yc2_C 21 CKVAVVGEATVGKSALIS 38 (208)
T ss_dssp EEEEEC------------
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 369999999999999865
No 401
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=72.63 E-value=1.2 Score=41.15 Aligned_cols=18 Identities=33% Similarity=0.440 Sum_probs=15.8
Q ss_pred CEEEEEecCCCCcccccc
Q 008523 335 DVALFFGLSGTGKTTLST 352 (563)
Q Consensus 335 ~valfFGLSGTGKTTLsa 352 (563)
..++|+|.+|+|||||..
T Consensus 27 ~ki~lvG~~~vGKSsLi~ 44 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVR 44 (201)
T ss_dssp EEEEEEESTTSSHHHHHH
T ss_pred eEEEEECcCCCCHHHHHH
Confidence 359999999999999765
No 402
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=72.54 E-value=0.96 Score=49.08 Aligned_cols=16 Identities=44% Similarity=0.717 Sum_probs=14.9
Q ss_pred EEEEecCCCCcccccc
Q 008523 337 ALFFGLSGTGKTTLST 352 (563)
Q Consensus 337 alfFGLSGTGKTTLsa 352 (563)
++|+|++|||||||+.
T Consensus 67 vLL~GppGtGKTtLar 82 (499)
T 2dhr_A 67 VLLVGPPGVGKTHLAR 82 (499)
T ss_dssp EEEECSSSSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 9999999999999875
No 403
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=72.50 E-value=1.1 Score=44.48 Aligned_cols=18 Identities=39% Similarity=0.661 Sum_probs=15.8
Q ss_pred CEEEEEecCCCCcccccc
Q 008523 335 DVALFFGLSGTGKTTLST 352 (563)
Q Consensus 335 ~valfFGLSGTGKTTLsa 352 (563)
..++|.|++|||||||+.
T Consensus 39 ~~~ll~G~~G~GKT~la~ 56 (373)
T 1jr3_A 39 HAYLFSGTRGVGKTSIAR 56 (373)
T ss_dssp SEEEEESCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 468999999999999865
No 404
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=72.50 E-value=1.2 Score=40.68 Aligned_cols=17 Identities=29% Similarity=0.300 Sum_probs=15.4
Q ss_pred EEEEEecCCCCcccccc
Q 008523 336 VALFFGLSGTGKTTLST 352 (563)
Q Consensus 336 valfFGLSGTGKTTLsa 352 (563)
.++|+|.+|+|||||..
T Consensus 27 ki~vvG~~~~GKSsli~ 43 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLI 43 (207)
T ss_dssp EEEEEECTTSSHHHHHH
T ss_pred EEEEECcCCCCHHHHHH
Confidence 69999999999999865
No 405
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=72.42 E-value=1.3 Score=40.75 Aligned_cols=19 Identities=26% Similarity=0.249 Sum_probs=16.3
Q ss_pred CCEEEEEecCCCCcccccc
Q 008523 334 GDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 334 G~valfFGLSGTGKTTLsa 352 (563)
.-.++++|.+|+|||||..
T Consensus 30 ~~ki~vvG~~~~GKSsLi~ 48 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLI 48 (204)
T ss_dssp CEEEEEEESTTSSHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHH
Confidence 3469999999999999873
No 406
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=72.37 E-value=1.1 Score=40.46 Aligned_cols=18 Identities=28% Similarity=0.374 Sum_probs=15.8
Q ss_pred CEEEEEecCCCCcccccc
Q 008523 335 DVALFFGLSGTGKTTLST 352 (563)
Q Consensus 335 ~valfFGLSGTGKTTLsa 352 (563)
-.++++|++|+|||||..
T Consensus 21 ~ki~~~G~~~~GKssl~~ 38 (201)
T 2q3h_A 21 VKCVLVGDGAVGKTSLVV 38 (201)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 469999999999999765
No 407
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=72.23 E-value=1.1 Score=47.62 Aligned_cols=19 Identities=32% Similarity=0.522 Sum_probs=16.5
Q ss_pred CCEEEEEecCCCCcccccc
Q 008523 334 GDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 334 G~valfFGLSGTGKTTLsa 352 (563)
...+++.|++|+||||++.
T Consensus 39 ~~~IvlvGlpGsGKSTia~ 57 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISK 57 (469)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHH
Confidence 3479999999999999876
No 408
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=72.08 E-value=1.1 Score=46.62 Aligned_cols=20 Identities=25% Similarity=0.410 Sum_probs=17.3
Q ss_pred CCCEEEEEecCCCCcccccc
Q 008523 333 DGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 333 ~G~valfFGLSGTGKTTLsa 352 (563)
.|..++++|++|||||||+.
T Consensus 122 ~gsviLI~GpPGsGKTtLAl 141 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVH 141 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHH
Confidence 35678999999999999876
No 409
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=71.90 E-value=1 Score=43.58 Aligned_cols=16 Identities=38% Similarity=0.574 Sum_probs=14.8
Q ss_pred EEEEecCCCCcccccc
Q 008523 337 ALFFGLSGTGKTTLST 352 (563)
Q Consensus 337 alfFGLSGTGKTTLsa 352 (563)
++|.|++|+||||++.
T Consensus 45 ~ll~G~~G~GKt~la~ 60 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVH 60 (323)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECcCCCCHHHHHH
Confidence 8999999999999875
No 410
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=71.86 E-value=1.3 Score=43.08 Aligned_cols=17 Identities=29% Similarity=0.407 Sum_probs=15.4
Q ss_pred EEEEEecCCCCcccccc
Q 008523 336 VALFFGLSGTGKTTLST 352 (563)
Q Consensus 336 valfFGLSGTGKTTLsa 352 (563)
.++|.|.+|+|||||..
T Consensus 5 ~i~lvG~~g~GKTTL~n 21 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFN 21 (271)
T ss_dssp EEEEEECSSSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 68999999999999865
No 411
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=71.83 E-value=1.1 Score=48.13 Aligned_cols=19 Identities=37% Similarity=0.644 Sum_probs=16.4
Q ss_pred CCEEEEEecCCCCcccccc
Q 008523 334 GDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 334 G~valfFGLSGTGKTTLsa 352 (563)
-+.+||+|++|||||.|+.
T Consensus 216 prGvLLyGPPGTGKTlLAk 234 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAK 234 (437)
T ss_dssp CSEEEEESSTTTTHHHHHH
T ss_pred CCCCceECCCCchHHHHHH
Confidence 3569999999999999875
No 412
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=71.66 E-value=1 Score=48.54 Aligned_cols=18 Identities=44% Similarity=0.597 Sum_probs=15.6
Q ss_pred CEEEEEecCCCCcccccc
Q 008523 335 DVALFFGLSGTGKTTLST 352 (563)
Q Consensus 335 ~valfFGLSGTGKTTLsa 352 (563)
..++|.|++|||||||+.
T Consensus 50 ~gvLL~GppGtGKT~Lar 67 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLAR 67 (476)
T ss_dssp SEEEEECCTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 349999999999999874
No 413
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=71.64 E-value=1.3 Score=39.88 Aligned_cols=18 Identities=33% Similarity=0.359 Sum_probs=15.9
Q ss_pred CEEEEEecCCCCcccccc
Q 008523 335 DVALFFGLSGTGKTTLST 352 (563)
Q Consensus 335 ~valfFGLSGTGKTTLsa 352 (563)
..++++|.+|+|||||..
T Consensus 23 ~ki~v~G~~~~GKSsli~ 40 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVN 40 (188)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 469999999999999765
No 414
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=71.61 E-value=1.3 Score=40.22 Aligned_cols=19 Identities=37% Similarity=0.371 Sum_probs=16.3
Q ss_pred CCEEEEEecCCCCcccccc
Q 008523 334 GDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 334 G~valfFGLSGTGKTTLsa 352 (563)
...++|+|.+|+|||||..
T Consensus 20 ~~~i~v~G~~~~GKSsli~ 38 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLV 38 (213)
T ss_dssp CEEEEEECSTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 3469999999999999765
No 415
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=71.58 E-value=1.3 Score=39.65 Aligned_cols=19 Identities=32% Similarity=0.448 Sum_probs=16.4
Q ss_pred CCEEEEEecCCCCcccccc
Q 008523 334 GDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 334 G~valfFGLSGTGKTTLsa 352 (563)
.-.+++.|.+|+|||||..
T Consensus 22 ~~~i~v~G~~~~GKssli~ 40 (189)
T 2x77_A 22 KIRVLMLGLDNAGKTSILY 40 (189)
T ss_dssp CEEEEEEEETTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 3469999999999999765
No 416
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=71.54 E-value=1.2 Score=48.12 Aligned_cols=19 Identities=37% Similarity=0.590 Sum_probs=16.5
Q ss_pred CCEEEEEecCCCCcccccc
Q 008523 334 GDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 334 G~valfFGLSGTGKTTLsa 352 (563)
...++|+|++|||||+|+.
T Consensus 238 ~~~vLL~GppGtGKT~lAr 256 (489)
T 3hu3_A 238 PRGILLYGPPGTGKTLIAR 256 (489)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CCcEEEECcCCCCHHHHHH
Confidence 3569999999999999875
No 417
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=71.52 E-value=1.3 Score=40.79 Aligned_cols=17 Identities=41% Similarity=0.569 Sum_probs=15.5
Q ss_pred EEEEEecCCCCcccccc
Q 008523 336 VALFFGLSGTGKTTLST 352 (563)
Q Consensus 336 valfFGLSGTGKTTLsa 352 (563)
.++++|.+|+|||||..
T Consensus 17 ki~v~G~~~~GKSsli~ 33 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVK 33 (221)
T ss_dssp EEEEEECTTSSHHHHHT
T ss_pred EEEEECCCCCCHHHHHH
Confidence 59999999999999766
No 418
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=71.50 E-value=1.3 Score=41.46 Aligned_cols=19 Identities=16% Similarity=0.365 Sum_probs=16.5
Q ss_pred CCEEEEEecCCCCcccccc
Q 008523 334 GDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 334 G~valfFGLSGTGKTTLsa 352 (563)
...++|+|.+|+|||||..
T Consensus 29 ~~kI~vvG~~~vGKSsLin 47 (228)
T 2qu8_A 29 KKTIILSGAPNVGKSSFMN 47 (228)
T ss_dssp SEEEEEECSTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 3579999999999999765
No 419
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=71.49 E-value=1.3 Score=40.67 Aligned_cols=18 Identities=33% Similarity=0.359 Sum_probs=15.8
Q ss_pred CEEEEEecCCCCcccccc
Q 008523 335 DVALFFGLSGTGKTTLST 352 (563)
Q Consensus 335 ~valfFGLSGTGKTTLsa 352 (563)
..++|+|.+|+|||||..
T Consensus 12 ~ki~vvG~~~~GKSsli~ 29 (218)
T 4djt_A 12 YKICLIGDGGVGKTTYIN 29 (218)
T ss_dssp EEEEEECCTTSSHHHHHC
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 359999999999999765
No 420
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=71.44 E-value=1.4 Score=39.57 Aligned_cols=17 Identities=29% Similarity=0.343 Sum_probs=15.3
Q ss_pred EEEEEecCCCCcccccc
Q 008523 336 VALFFGLSGTGKTTLST 352 (563)
Q Consensus 336 valfFGLSGTGKTTLsa 352 (563)
.++++|.+|+|||||..
T Consensus 20 ki~v~G~~~~GKssli~ 36 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLM 36 (194)
T ss_dssp EEEEEECTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 59999999999999765
No 421
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=71.36 E-value=0.98 Score=48.91 Aligned_cols=19 Identities=37% Similarity=0.529 Sum_probs=16.4
Q ss_pred CCEEEEEecCCCCcccccc
Q 008523 334 GDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 334 G~valfFGLSGTGKTTLsa 352 (563)
-+.+||+|++|||||+|+.
T Consensus 243 prGILLyGPPGTGKTlLAk 261 (467)
T 4b4t_H 243 PKGILLYGPPGTGKTLCAR 261 (467)
T ss_dssp CSEEEECSCTTSSHHHHHH
T ss_pred CCceEeeCCCCCcHHHHHH
Confidence 3569999999999998765
No 422
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=71.35 E-value=1.3 Score=40.29 Aligned_cols=18 Identities=17% Similarity=0.233 Sum_probs=16.0
Q ss_pred CEEEEEecCCCCcccccc
Q 008523 335 DVALFFGLSGTGKTTLST 352 (563)
Q Consensus 335 ~valfFGLSGTGKTTLsa 352 (563)
..++++|.+|+|||||..
T Consensus 29 ~ki~v~G~~~~GKSsli~ 46 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLM 46 (199)
T ss_dssp EEEEEESSTTSSHHHHHH
T ss_pred eEEEEECcCCCCHHHHHH
Confidence 469999999999999765
No 423
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=71.21 E-value=1.2 Score=46.32 Aligned_cols=20 Identities=20% Similarity=0.330 Sum_probs=17.2
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
+.| +++++|++|+|||||+.
T Consensus 27 ~~G-iteI~G~pGsGKTtL~L 46 (333)
T 3io5_A 27 QSG-LLILAGPSKSFKSNFGL 46 (333)
T ss_dssp CSE-EEEEEESSSSSHHHHHH
T ss_pred cCC-eEEEECCCCCCHHHHHH
Confidence 346 79999999999999866
No 424
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=71.18 E-value=1.4 Score=46.07 Aligned_cols=20 Identities=20% Similarity=0.541 Sum_probs=17.1
Q ss_pred CCCEEEEEecCCCCcccccc
Q 008523 333 DGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 333 ~G~valfFGLSGTGKTTLsa 352 (563)
.|...+|.|++|+|||||..
T Consensus 25 ~~~~~~i~G~nG~GKstll~ 44 (430)
T 1w1w_A 25 ESNFTSIIGPNGSGKSNMMD 44 (430)
T ss_dssp TCSEEEEECSTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 46799999999999999543
No 425
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=71.18 E-value=1.2 Score=47.79 Aligned_cols=18 Identities=39% Similarity=0.689 Sum_probs=16.4
Q ss_pred CEEEEEecCCCCcccccc
Q 008523 335 DVALFFGLSGTGKTTLST 352 (563)
Q Consensus 335 ~valfFGLSGTGKTTLsa 352 (563)
..++|.|++|||||||+.
T Consensus 78 ~~lLL~GppGtGKTtla~ 95 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAH 95 (516)
T ss_dssp SEEEEECSTTSSHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 689999999999999875
No 426
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=71.13 E-value=1.1 Score=44.72 Aligned_cols=19 Identities=37% Similarity=0.524 Sum_probs=16.4
Q ss_pred CCEEEEEecCCCCcccccc
Q 008523 334 GDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 334 G~valfFGLSGTGKTTLsa 352 (563)
+..++|.|.+|||||+++.
T Consensus 25 ~~~vLi~Ge~GtGKt~lAr 43 (304)
T 1ojl_A 25 DATVLIHGDSGTGKELVAR 43 (304)
T ss_dssp TSCEEEESCTTSCHHHHHH
T ss_pred CCcEEEECCCCchHHHHHH
Confidence 4579999999999999874
No 427
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=71.08 E-value=1.3 Score=40.62 Aligned_cols=17 Identities=47% Similarity=0.491 Sum_probs=15.3
Q ss_pred EEEEEecCCCCcccccc
Q 008523 336 VALFFGLSGTGKTTLST 352 (563)
Q Consensus 336 valfFGLSGTGKTTLsa 352 (563)
.++|+|++|+|||||..
T Consensus 27 ki~vvG~~~~GKSsLi~ 43 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLY 43 (217)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred EEEEECcCCCCHHHHHH
Confidence 59999999999999765
No 428
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=71.00 E-value=1.4 Score=39.98 Aligned_cols=19 Identities=37% Similarity=0.434 Sum_probs=16.6
Q ss_pred CCEEEEEecCCCCcccccc
Q 008523 334 GDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 334 G~valfFGLSGTGKTTLsa 352 (563)
...++++|++|+|||||..
T Consensus 29 ~~ki~v~G~~~vGKSsLi~ 47 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILY 47 (192)
T ss_dssp CEEEEEEESTTSSHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHH
Confidence 4569999999999999865
No 429
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=70.99 E-value=0.71 Score=47.32 Aligned_cols=19 Identities=32% Similarity=0.611 Sum_probs=17.0
Q ss_pred CCCCEEEEEecCCCCccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLS 351 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLs 351 (563)
..| ..+|.|.+|+|||||.
T Consensus 59 ~~G-~~~lvG~NGaGKStLl 77 (415)
T 4aby_A 59 GGG-FCAFTGETGAGKSIIV 77 (415)
T ss_dssp CSS-EEEEEESHHHHHHHHT
T ss_pred CCC-cEEEECCCCCCHHHHH
Confidence 567 9999999999999976
No 430
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=70.95 E-value=1.4 Score=40.72 Aligned_cols=17 Identities=35% Similarity=0.520 Sum_probs=15.4
Q ss_pred EEEEEecCCCCcccccc
Q 008523 336 VALFFGLSGTGKTTLST 352 (563)
Q Consensus 336 valfFGLSGTGKTTLsa 352 (563)
.+++.|.+|+|||||..
T Consensus 36 ki~vvG~~~vGKSsli~ 52 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLM 52 (214)
T ss_dssp EEEEEECTTSSHHHHHH
T ss_pred EEEEECcCCCCHHHHHH
Confidence 59999999999999865
No 431
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=70.65 E-value=1.4 Score=39.58 Aligned_cols=17 Identities=35% Similarity=0.737 Sum_probs=14.9
Q ss_pred CEEEEEecCCCCccccc
Q 008523 335 DVALFFGLSGTGKTTLS 351 (563)
Q Consensus 335 ~valfFGLSGTGKTTLs 351 (563)
...++.|+.|+|||||.
T Consensus 24 g~~~I~G~NGsGKStil 40 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLL 40 (149)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 47899999999999953
No 432
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=70.53 E-value=1.5 Score=52.81 Aligned_cols=21 Identities=33% Similarity=0.605 Sum_probs=19.0
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
+.|..+++.|+||+|||||..
T Consensus 442 ~~G~~vaivG~sGsGKSTll~ 462 (1321)
T 4f4c_A 442 NAGQTVALVGSSGCGKSTIIS 462 (1321)
T ss_dssp CTTCEEEEEECSSSCHHHHHH
T ss_pred cCCcEEEEEecCCCcHHHHHH
Confidence 678999999999999999765
No 433
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=70.40 E-value=1.3 Score=47.15 Aligned_cols=18 Identities=39% Similarity=0.628 Sum_probs=15.8
Q ss_pred CEEEEEecCCCCcccccc
Q 008523 335 DVALFFGLSGTGKTTLST 352 (563)
Q Consensus 335 ~valfFGLSGTGKTTLsa 352 (563)
..+++.|+||+|||||+.
T Consensus 3 ~~i~i~GptgsGKttla~ 20 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSI 20 (409)
T ss_dssp EEEEEEECSSSSHHHHHH
T ss_pred cEEEEECcchhhHHHHHH
Confidence 368899999999999876
No 434
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=70.28 E-value=1.4 Score=40.24 Aligned_cols=18 Identities=22% Similarity=0.189 Sum_probs=15.7
Q ss_pred CEEEEEecCCCCcccccc
Q 008523 335 DVALFFGLSGTGKTTLST 352 (563)
Q Consensus 335 ~valfFGLSGTGKTTLsa 352 (563)
-.+++.|++|+|||||..
T Consensus 10 ~ki~i~G~~~~GKTsli~ 27 (212)
T 2j0v_A 10 IKCVTVGDGAVGKTCMLI 27 (212)
T ss_dssp EEEEEEESTTSSHHHHHH
T ss_pred EEEEEECCCCCCHHHHHH
Confidence 359999999999999764
No 435
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=70.22 E-value=1.3 Score=44.57 Aligned_cols=19 Identities=42% Similarity=0.602 Sum_probs=17.3
Q ss_pred CCEEEEEecCCCCcccccc
Q 008523 334 GDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 334 G~valfFGLSGTGKTTLsa 352 (563)
+.+++|.|.+|+||||++.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~ 116 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAG 116 (297)
T ss_dssp SEEEEEECSSCSSTTHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 7889999999999999776
No 436
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=70.22 E-value=1.5 Score=39.92 Aligned_cols=17 Identities=29% Similarity=0.317 Sum_probs=15.4
Q ss_pred EEEEEecCCCCcccccc
Q 008523 336 VALFFGLSGTGKTTLST 352 (563)
Q Consensus 336 valfFGLSGTGKTTLsa 352 (563)
.++|+|.+|+|||||..
T Consensus 27 ki~vvG~~~~GKSsli~ 43 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLI 43 (201)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 59999999999999864
No 437
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=70.11 E-value=1.5 Score=41.95 Aligned_cols=18 Identities=28% Similarity=0.460 Sum_probs=16.0
Q ss_pred CEEEEEecCCCCcccccc
Q 008523 335 DVALFFGLSGTGKTTLST 352 (563)
Q Consensus 335 ~valfFGLSGTGKTTLsa 352 (563)
..++++|.+|+|||||..
T Consensus 23 ~~I~lvG~~g~GKStl~n 40 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGN 40 (260)
T ss_dssp EEEEEEECTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 469999999999999865
No 438
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=70.03 E-value=1.5 Score=44.03 Aligned_cols=21 Identities=24% Similarity=0.322 Sum_probs=19.0
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
..|..+++.|.+|+|||||+.
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l 86 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFAL 86 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHH
Confidence 568999999999999999876
No 439
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=70.01 E-value=1.4 Score=51.86 Aligned_cols=21 Identities=33% Similarity=0.354 Sum_probs=18.7
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
..|+.+++.|++|+|||||..
T Consensus 459 ~~Ge~v~LiGpNGsGKSTLLk 479 (986)
T 2iw3_A 459 KRARRYGICGPNGCGKSTLMR 479 (986)
T ss_dssp ETTCEEEEECSTTSSHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 578999999999999999754
No 440
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=69.83 E-value=1.4 Score=47.83 Aligned_cols=19 Identities=21% Similarity=0.574 Sum_probs=16.7
Q ss_pred CCEEEEEecCCCCcccccc
Q 008523 334 GDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 334 G~valfFGLSGTGKTTLsa 352 (563)
|..++|+|++|||||+|+.
T Consensus 41 ~~~VLL~GpPGtGKT~LAr 59 (500)
T 3nbx_X 41 GESVFLLGPPGIAKSLIAR 59 (500)
T ss_dssp TCEEEEECCSSSSHHHHHH
T ss_pred CCeeEeecCchHHHHHHHH
Confidence 4589999999999999875
No 441
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=69.74 E-value=1.6 Score=40.49 Aligned_cols=18 Identities=33% Similarity=0.263 Sum_probs=15.9
Q ss_pred CEEEEEecCCCCcccccc
Q 008523 335 DVALFFGLSGTGKTTLST 352 (563)
Q Consensus 335 ~valfFGLSGTGKTTLsa 352 (563)
..++|.|.+|+|||||..
T Consensus 29 ~ki~vvG~~~vGKSsLi~ 46 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLH 46 (205)
T ss_dssp EEEEEEESTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 369999999999999865
No 442
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=69.67 E-value=1.3 Score=48.34 Aligned_cols=21 Identities=33% Similarity=0.518 Sum_probs=18.0
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
+.+..++|.|++|+||||++.
T Consensus 370 ~~~~~I~l~G~~GsGKSTia~ 390 (546)
T 2gks_A 370 KQGFCVWLTGLPCAGKSTIAE 390 (546)
T ss_dssp GCCEEEEEECSTTSSHHHHHH
T ss_pred ccceEEEccCCCCCCHHHHHH
Confidence 346789999999999999876
No 443
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=69.59 E-value=1.2 Score=47.43 Aligned_cols=44 Identities=18% Similarity=0.296 Sum_probs=27.4
Q ss_pred hhHHHHHHHHHHhcccCceeeecccceecCCCCEEEEEecCCCCcccccc
Q 008523 303 EMKKGLFSVMHYLMPKRQILSLHSGCNMGKDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 303 EiKK~iltl~n~~l~~~G~L~mH~sanvg~~G~valfFGLSGTGKTTLsa 352 (563)
.++|.+..-+..++.... + ..+.. .+.+++|.|++|+||||++.
T Consensus 73 ~~~~~v~~~L~~~~~~~~----~-~i~l~-~~~vi~i~G~~GsGKTT~~~ 116 (425)
T 2ffh_A 73 VILATVYEALKEALGGEA----R-LPVLK-DRNLWFLVGLQGSGKTTTAA 116 (425)
T ss_dssp HHHHHHHHHHHHHTTSSC----C-CCCCC-SSEEEEEECCTTSSHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCc----c-cccCC-CCeEEEEECCCCCCHHHHHH
Confidence 456666655544443211 1 12222 57789999999999999776
No 444
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=69.55 E-value=1.5 Score=42.65 Aligned_cols=17 Identities=41% Similarity=0.581 Sum_probs=15.5
Q ss_pred EEEEEecCCCCcccccc
Q 008523 336 VALFFGLSGTGKTTLST 352 (563)
Q Consensus 336 valfFGLSGTGKTTLsa 352 (563)
.+++.|.+|+|||||..
T Consensus 10 ~I~vvG~~g~GKSTLin 26 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLIN 26 (274)
T ss_dssp EEEEEECTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 59999999999999875
No 445
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=69.36 E-value=1.6 Score=42.55 Aligned_cols=18 Identities=28% Similarity=0.600 Sum_probs=16.3
Q ss_pred CEEEEEecCCCCcccccc
Q 008523 335 DVALFFGLSGTGKTTLST 352 (563)
Q Consensus 335 ~valfFGLSGTGKTTLsa 352 (563)
..+++.|+.|+|||||..
T Consensus 32 ~~v~i~G~~G~GKT~Ll~ 49 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLR 49 (350)
T ss_dssp SEEEEECCTTSSHHHHHH
T ss_pred CeEEEECCCcCCHHHHHH
Confidence 589999999999999875
No 446
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=69.26 E-value=1.6 Score=44.97 Aligned_cols=19 Identities=32% Similarity=0.644 Sum_probs=15.8
Q ss_pred CCCCEEEEEecCCCCccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLS 351 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLs 351 (563)
..| ..++.|++|+|||||.
T Consensus 22 ~~g-~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 22 QSG-ITVVEGPNGAGKSSLF 40 (365)
T ss_dssp CSE-EEEEECCTTSSHHHHH
T ss_pred CCC-eEEEECCCCCCHHHHH
Confidence 345 7889999999999964
No 447
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=69.19 E-value=1.5 Score=50.55 Aligned_cols=21 Identities=38% Similarity=0.542 Sum_probs=19.1
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
+.|..+++.|.||+|||||..
T Consensus 521 ~~Geiv~I~G~nGSGKSTLl~ 541 (842)
T 2vf7_A 521 PLGVMTSVTGVSGSGKSTLVS 541 (842)
T ss_dssp ESSSEEEEECCTTSSHHHHCC
T ss_pred cCCCEEEEEcCCCcCHHHHHH
Confidence 568999999999999999876
No 448
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=69.04 E-value=1.7 Score=40.39 Aligned_cols=19 Identities=32% Similarity=0.337 Sum_probs=16.8
Q ss_pred CCEEEEEecCCCCcccccc
Q 008523 334 GDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 334 G~valfFGLSGTGKTTLsa 352 (563)
|...++.|+-|+||||+..
T Consensus 3 g~i~vi~G~~gsGKTT~ll 21 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELL 21 (184)
T ss_dssp CCEEEEEESTTSSHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHH
Confidence 6789999999999999764
No 449
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=69.01 E-value=1.6 Score=39.83 Aligned_cols=17 Identities=24% Similarity=0.348 Sum_probs=15.3
Q ss_pred EEEEEecCCCCcccccc
Q 008523 336 VALFFGLSGTGKTTLST 352 (563)
Q Consensus 336 valfFGLSGTGKTTLsa 352 (563)
.++|+|++|+|||||..
T Consensus 31 ki~vvG~~~vGKSsli~ 47 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQ 47 (201)
T ss_dssp EEEEEECTTSSHHHHHH
T ss_pred EEEEECcCCCCHHHHHH
Confidence 49999999999999765
No 450
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=68.99 E-value=1.6 Score=52.36 Aligned_cols=21 Identities=38% Similarity=0.566 Sum_probs=19.0
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
+.|..+++.|.||+|||||..
T Consensus 414 ~~G~~~~ivG~sGsGKSTl~~ 434 (1284)
T 3g5u_A 414 KSGQTVALVGNSGCGKSTTVQ 434 (1284)
T ss_dssp CTTCEEEEECCSSSSHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 678999999999999999765
No 451
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=68.98 E-value=0.9 Score=41.74 Aligned_cols=19 Identities=32% Similarity=0.317 Sum_probs=16.6
Q ss_pred CCEEEEEecCCCCcccccc
Q 008523 334 GDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 334 G~valfFGLSGTGKTTLsa 352 (563)
...++++|.+|+|||||..
T Consensus 29 ~~~i~v~G~~~~GKSslin 47 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAIN 47 (223)
T ss_dssp SCEEEEEESCHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHH
Confidence 3579999999999999865
No 452
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=68.92 E-value=1.5 Score=45.33 Aligned_cols=20 Identities=35% Similarity=0.587 Sum_probs=17.9
Q ss_pred CCCEEEEEecCCCCcccccc
Q 008523 333 DGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 333 ~G~valfFGLSGTGKTTLsa 352 (563)
.|.+++++|.+|+|||||+.
T Consensus 62 ~G~ii~I~G~pGsGKTtLal 81 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTL 81 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 46799999999999999875
No 453
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=68.78 E-value=1.3 Score=40.97 Aligned_cols=18 Identities=22% Similarity=0.257 Sum_probs=15.8
Q ss_pred CEEEEEecCCCCcccccc
Q 008523 335 DVALFFGLSGTGKTTLST 352 (563)
Q Consensus 335 ~valfFGLSGTGKTTLsa 352 (563)
..+++.|.+||||||++.
T Consensus 4 ~~i~i~G~~gsGkst~~~ 21 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAK 21 (219)
T ss_dssp CCEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 468999999999999875
No 454
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=68.72 E-value=1.5 Score=46.48 Aligned_cols=17 Identities=41% Similarity=0.581 Sum_probs=15.1
Q ss_pred EEEEEecCCCCcccccc
Q 008523 336 VALFFGLSGTGKTTLST 352 (563)
Q Consensus 336 valfFGLSGTGKTTLsa 352 (563)
.+++.|.||+|||||..
T Consensus 33 ~I~lvG~sGaGKSTLln 49 (418)
T 2qag_C 33 TLMVVGESGLGKSTLIN 49 (418)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCcHHHHHH
Confidence 47999999999999765
No 455
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=68.68 E-value=1.5 Score=40.05 Aligned_cols=17 Identities=35% Similarity=0.645 Sum_probs=15.4
Q ss_pred EEEEEecCCCCcccccc
Q 008523 336 VALFFGLSGTGKTTLST 352 (563)
Q Consensus 336 valfFGLSGTGKTTLsa 352 (563)
.+++.|++|+|||||..
T Consensus 8 kv~lvG~~~vGKSsL~~ 24 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLAN 24 (192)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58999999999999875
No 456
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=68.59 E-value=1.9 Score=43.32 Aligned_cols=18 Identities=33% Similarity=0.625 Sum_probs=15.6
Q ss_pred CCCEEEEEecCCCCccccc
Q 008523 333 DGDVALFFGLSGTGKTTLS 351 (563)
Q Consensus 333 ~G~valfFGLSGTGKTTLs 351 (563)
.| ..+|.|++|+|||||.
T Consensus 24 ~g-~~~i~G~NGsGKS~ll 41 (322)
T 1e69_A 24 DR-VTAIVGPNGSGKSNII 41 (322)
T ss_dssp SS-EEEEECCTTTCSTHHH
T ss_pred CC-cEEEECCCCCcHHHHH
Confidence 45 8999999999999954
No 457
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=68.53 E-value=1.2 Score=45.51 Aligned_cols=21 Identities=10% Similarity=0.080 Sum_probs=17.6
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
..+..+++.|+.|||||++..
T Consensus 43 ~~~~~lli~GpPGTGKT~~v~ 63 (318)
T 3te6_A 43 SQNKLFYITNADDSTKFQLVN 63 (318)
T ss_dssp TCCCEEEEECCCSHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHH
Confidence 346789999999999998765
No 458
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=67.81 E-value=1.7 Score=46.09 Aligned_cols=17 Identities=29% Similarity=0.597 Sum_probs=15.2
Q ss_pred EEEEEecCCCCcccccc
Q 008523 336 VALFFGLSGTGKTTLST 352 (563)
Q Consensus 336 valfFGLSGTGKTTLsa 352 (563)
.++|+|++|||||+|+.
T Consensus 203 ~~LL~G~pG~GKT~la~ 219 (468)
T 3pxg_A 203 NPVLIGEPGVGKTAIAE 219 (468)
T ss_dssp EEEEESCTTTTTHHHHH
T ss_pred CeEEECCCCCCHHHHHH
Confidence 57999999999999875
No 459
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=67.63 E-value=1.6 Score=40.54 Aligned_cols=17 Identities=24% Similarity=0.290 Sum_probs=15.5
Q ss_pred EEEEEecCCCCcccccc
Q 008523 336 VALFFGLSGTGKTTLST 352 (563)
Q Consensus 336 valfFGLSGTGKTTLsa 352 (563)
.++|+|++|+|||||..
T Consensus 29 ki~vvG~~~vGKSsL~~ 45 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQ 45 (214)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECcCCCCHHHHHH
Confidence 59999999999999865
No 460
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=70.76 E-value=1.1 Score=40.71 Aligned_cols=19 Identities=26% Similarity=0.249 Sum_probs=16.2
Q ss_pred CCEEEEEecCCCCcccccc
Q 008523 334 GDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 334 G~valfFGLSGTGKTTLsa 352 (563)
.-.++++|.+|+|||||..
T Consensus 30 ~~ki~v~G~~~~GKSsli~ 48 (204)
T 3th5_A 30 AIKCVVVGDGAVGKTCLLI 48 (204)
Confidence 3469999999999999864
No 461
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=67.36 E-value=1.4 Score=47.22 Aligned_cols=20 Identities=35% Similarity=0.622 Sum_probs=17.6
Q ss_pred CCCEEEEEecCCCCcccccc
Q 008523 333 DGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 333 ~G~valfFGLSGTGKTTLsa 352 (563)
...+++|.|++|+||||+++
T Consensus 99 ~p~vIlivG~~G~GKTTt~~ 118 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVA 118 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHH
Confidence 35789999999999999776
No 462
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=67.36 E-value=1.6 Score=41.43 Aligned_cols=18 Identities=39% Similarity=0.532 Sum_probs=15.3
Q ss_pred CEEEEEecCCCCcccccc
Q 008523 335 DVALFFGLSGTGKTTLST 352 (563)
Q Consensus 335 ~valfFGLSGTGKTTLsa 352 (563)
.=++|-|+-|+||||++.
T Consensus 3 kFI~~EG~dGsGKsTq~~ 20 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVIN 20 (205)
T ss_dssp EEEEEECCTTSCHHHHHH
T ss_pred CEEEEECCCCCcHHHHHH
Confidence 458899999999999665
No 463
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=67.32 E-value=1.5 Score=41.21 Aligned_cols=16 Identities=38% Similarity=0.613 Sum_probs=14.0
Q ss_pred EEEEecCCCCcccccc
Q 008523 337 ALFFGLSGTGKTTLST 352 (563)
Q Consensus 337 alfFGLSGTGKTTLsa 352 (563)
++|-|+-||||||++.
T Consensus 3 I~~EG~DGsGKsTq~~ 18 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQ 18 (197)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6799999999999655
No 464
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=66.94 E-value=1.7 Score=41.84 Aligned_cols=18 Identities=22% Similarity=0.482 Sum_probs=15.8
Q ss_pred CEEEEEecCCCCcccccc
Q 008523 335 DVALFFGLSGTGKTTLST 352 (563)
Q Consensus 335 ~valfFGLSGTGKTTLsa 352 (563)
-.++++|.+|+|||||..
T Consensus 22 l~I~lvG~~g~GKSSlin 39 (247)
T 3lxw_A 22 RRLILVGRTGAGKSATGN 39 (247)
T ss_dssp EEEEEESSTTSSHHHHHH
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 359999999999999765
No 465
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=66.51 E-value=1.9 Score=42.00 Aligned_cols=18 Identities=33% Similarity=0.647 Sum_probs=16.1
Q ss_pred CEEEEEecCCCCcccccc
Q 008523 335 DVALFFGLSGTGKTTLST 352 (563)
Q Consensus 335 ~valfFGLSGTGKTTLsa 352 (563)
..+++.|++|+|||||..
T Consensus 31 ~~v~i~G~~G~GKT~L~~ 48 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIK 48 (357)
T ss_dssp SEEEEEESTTSSHHHHHH
T ss_pred CcEEEECCCCCCHHHHHH
Confidence 489999999999999875
No 466
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=66.50 E-value=1.5 Score=46.66 Aligned_cols=19 Identities=42% Similarity=0.751 Sum_probs=16.9
Q ss_pred CCEEEEEecCCCCcccccc
Q 008523 334 GDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 334 G~valfFGLSGTGKTTLsa 352 (563)
..+++|.|++|+|||||++
T Consensus 99 ~~vI~ivG~~GvGKTTla~ 117 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAA 117 (432)
T ss_dssp CCCEEEECCSSSSTTHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3589999999999999876
No 467
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=66.43 E-value=1.1 Score=43.69 Aligned_cols=19 Identities=26% Similarity=0.482 Sum_probs=16.3
Q ss_pred CCEEEEEecCCCCcccccc
Q 008523 334 GDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 334 G~valfFGLSGTGKTTLsa 352 (563)
...++|.|+.||||||++.
T Consensus 58 kn~ili~GPPGtGKTt~a~ 76 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGM 76 (212)
T ss_dssp CSEEEEESCGGGCHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHH
Confidence 3469999999999999765
No 468
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=66.00 E-value=2 Score=51.62 Aligned_cols=21 Identities=38% Similarity=0.608 Sum_probs=18.5
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
+.|..+.+.|+||+|||||..
T Consensus 1057 ~~Ge~v~ivG~sGsGKSTl~~ 1077 (1284)
T 3g5u_A 1057 KKGQTLALVGSSGCGKSTVVQ 1077 (1284)
T ss_dssp CSSSEEEEECSSSTTHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 458899999999999999765
No 469
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=65.80 E-value=1.6 Score=46.76 Aligned_cols=18 Identities=33% Similarity=0.601 Sum_probs=15.7
Q ss_pred CEEEEEecCCCCcccccc
Q 008523 335 DVALFFGLSGTGKTTLST 352 (563)
Q Consensus 335 ~valfFGLSGTGKTTLsa 352 (563)
..++|+|++|||||||+.
T Consensus 51 ~~iLl~GppGtGKT~lar 68 (444)
T 1g41_A 51 KNILMIGPTGVGKTEIAR 68 (444)
T ss_dssp CCEEEECCTTSSHHHHHH
T ss_pred ceEEEEcCCCCCHHHHHH
Confidence 459999999999999765
No 470
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=65.67 E-value=2 Score=43.92 Aligned_cols=21 Identities=24% Similarity=0.162 Sum_probs=17.9
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
.++.+++|.|.+|+|||||..
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln 92 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIE 92 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHH
Confidence 346789999999999999765
No 471
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=65.59 E-value=2 Score=50.13 Aligned_cols=20 Identities=35% Similarity=0.504 Sum_probs=18.1
Q ss_pred CCCCEEEEEecCCCCccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLS 351 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLs 351 (563)
+.|..+++.|.||+|||||.
T Consensus 608 ~~Geiv~I~G~SGSGKSTLl 627 (916)
T 3pih_A 608 PLGVFVCVTGVSGSGKSSLV 627 (916)
T ss_dssp ESSSEEEEECSTTSSHHHHH
T ss_pred cCCcEEEEEccCCCChhhhH
Confidence 45889999999999999985
No 472
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=65.21 E-value=2 Score=39.87 Aligned_cols=17 Identities=35% Similarity=0.567 Sum_probs=15.4
Q ss_pred EEEEEecCCCCcccccc
Q 008523 336 VALFFGLSGTGKTTLST 352 (563)
Q Consensus 336 valfFGLSGTGKTTLsa 352 (563)
.++|+|.+|+|||||..
T Consensus 15 ki~v~G~~~vGKSsli~ 31 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLS 31 (223)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred EEEEECcCCCCHHHHHH
Confidence 59999999999999765
No 473
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=65.17 E-value=2.1 Score=45.14 Aligned_cols=21 Identities=19% Similarity=0.346 Sum_probs=19.0
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
..|+.+++.|.+|+|||||+.
T Consensus 201 ~~G~liiI~G~pG~GKTtl~l 221 (454)
T 2r6a_A 201 QRSDLIIVAARPSVGKTAFAL 221 (454)
T ss_dssp CTTCEEEEECCTTSCHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 568899999999999999876
No 474
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=64.80 E-value=1.9 Score=45.20 Aligned_cols=17 Identities=29% Similarity=0.698 Sum_probs=15.0
Q ss_pred EEEEEecCCCCcccccc
Q 008523 336 VALFFGLSGTGKTTLST 352 (563)
Q Consensus 336 valfFGLSGTGKTTLsa 352 (563)
.+++.|.+|+|||||..
T Consensus 26 ~i~l~G~~G~GKTTl~~ 42 (359)
T 2ga8_A 26 CVILVGSPGSGKSTIAE 42 (359)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCcHHHHHH
Confidence 48999999999999864
No 475
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=64.64 E-value=2.2 Score=41.34 Aligned_cols=18 Identities=28% Similarity=0.434 Sum_probs=15.9
Q ss_pred CEEEEEecCCCCcccccc
Q 008523 335 DVALFFGLSGTGKTTLST 352 (563)
Q Consensus 335 ~valfFGLSGTGKTTLsa 352 (563)
..++++|.+|+|||||..
T Consensus 40 ~~I~vvG~~g~GKSSLin 57 (270)
T 1h65_A 40 LTILVMGKGGVGKSSTVN 57 (270)
T ss_dssp EEEEEEESTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 369999999999999765
No 476
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=64.61 E-value=2.1 Score=40.18 Aligned_cols=17 Identities=35% Similarity=0.737 Sum_probs=15.0
Q ss_pred CEEEEEecCCCCccccc
Q 008523 335 DVALFFGLSGTGKTTLS 351 (563)
Q Consensus 335 ~valfFGLSGTGKTTLs 351 (563)
...+|+|+.|+|||||.
T Consensus 24 ~~~~I~G~NgsGKStil 40 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLL 40 (203)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred CeEEEEcCCCCCHHHHH
Confidence 47899999999999964
No 477
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=64.61 E-value=2.2 Score=41.22 Aligned_cols=18 Identities=28% Similarity=0.477 Sum_probs=16.0
Q ss_pred CEEEEEecCCCCcccccc
Q 008523 335 DVALFFGLSGTGKTTLST 352 (563)
Q Consensus 335 ~valfFGLSGTGKTTLsa 352 (563)
..++++|.+|+|||||..
T Consensus 37 ~~I~lvG~~g~GKSSLin 54 (262)
T 3def_A 37 MTVLVLGKGGVGKSSTVN 54 (262)
T ss_dssp EEEEEEECTTSSHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 369999999999999875
No 478
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=63.95 E-value=2.4 Score=48.68 Aligned_cols=21 Identities=19% Similarity=0.221 Sum_probs=18.5
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
..|+.+++.|++|+|||||..
T Consensus 605 ~~g~i~~ItGpNGsGKSTlLr 625 (800)
T 1wb9_A 605 PQRRMLIITGPNMGGKSTYMR 625 (800)
T ss_dssp SSSCEEEEECCTTSSHHHHHH
T ss_pred CCCcEEEEECCCCCChHHHHH
Confidence 568899999999999999754
No 479
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=63.81 E-value=2.1 Score=44.48 Aligned_cols=20 Identities=40% Similarity=0.682 Sum_probs=16.5
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
..| ..+|.|++|+|||||..
T Consensus 25 ~~g-~~~i~G~nG~GKttll~ 44 (359)
T 2o5v_A 25 PEG-VTGIYGENGAGKTNLLE 44 (359)
T ss_dssp CSE-EEEEECCTTSSHHHHHH
T ss_pred cCC-eEEEECCCCCChhHHHH
Confidence 345 89999999999999543
No 480
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=63.80 E-value=1.8 Score=46.03 Aligned_cols=19 Identities=47% Similarity=0.588 Sum_probs=16.8
Q ss_pred CCEEEEEecCCCCcccccc
Q 008523 334 GDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 334 G~valfFGLSGTGKTTLsa 352 (563)
..+++|.|++|+||||+++
T Consensus 100 ~~vI~ivG~~GvGKTT~a~ 118 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVG 118 (433)
T ss_dssp SEEEEEECSTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4689999999999999876
No 481
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=63.71 E-value=2.4 Score=41.27 Aligned_cols=17 Identities=47% Similarity=0.546 Sum_probs=15.3
Q ss_pred EEEEEecCCCCcccccc
Q 008523 336 VALFFGLSGTGKTTLST 352 (563)
Q Consensus 336 valfFGLSGTGKTTLsa 352 (563)
.+++.|.+|+|||||..
T Consensus 3 kI~lvG~~n~GKSTL~n 19 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFN 19 (256)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 68999999999999765
No 482
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=63.34 E-value=2.4 Score=44.06 Aligned_cols=20 Identities=35% Similarity=0.591 Sum_probs=17.7
Q ss_pred CCCEEEEEecCCCCcccccc
Q 008523 333 DGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 333 ~G~valfFGLSGTGKTTLsa 352 (563)
.|+.++++|.+|+|||||+.
T Consensus 73 ~G~li~I~G~pGsGKTtlal 92 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLAL 92 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHH
Confidence 46789999999999999875
No 483
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=63.31 E-value=1.4 Score=51.72 Aligned_cols=21 Identities=29% Similarity=0.366 Sum_probs=18.3
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
..|..+++.|++|+|||||..
T Consensus 697 ~~GeivaIiGpNGSGKSTLLk 717 (986)
T 2iw3_A 697 SLSSRIAVIGPNGAGKSTLIN 717 (986)
T ss_dssp ETTCEEEECSCCCHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 457889999999999999765
No 484
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=63.15 E-value=2 Score=48.14 Aligned_cols=17 Identities=41% Similarity=0.745 Sum_probs=15.6
Q ss_pred EEEEEecCCCCcccccc
Q 008523 336 VALFFGLSGTGKTTLST 352 (563)
Q Consensus 336 valfFGLSGTGKTTLsa 352 (563)
.++|+|++|||||+|+.
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ 539 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELAR 539 (758)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 69999999999999875
No 485
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=62.96 E-value=2.2 Score=49.15 Aligned_cols=18 Identities=39% Similarity=0.652 Sum_probs=16.1
Q ss_pred CEEEEEecCCCCcccccc
Q 008523 335 DVALFFGLSGTGKTTLST 352 (563)
Q Consensus 335 ~valfFGLSGTGKTTLsa 352 (563)
+.+||+|++|||||+|+.
T Consensus 239 ~GILL~GPPGTGKT~LAr 256 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLIAR 256 (806)
T ss_dssp CEEEEECCTTSCHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 569999999999999875
No 486
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=62.92 E-value=2.5 Score=41.45 Aligned_cols=17 Identities=35% Similarity=0.397 Sum_probs=15.4
Q ss_pred EEEEEecCCCCcccccc
Q 008523 336 VALFFGLSGTGKTTLST 352 (563)
Q Consensus 336 valfFGLSGTGKTTLsa 352 (563)
.++++|.+|+|||||..
T Consensus 5 ~I~lvG~~n~GKSTLin 21 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFN 21 (274)
T ss_dssp EEEEEECTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58999999999999765
No 487
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=62.81 E-value=1.6 Score=43.95 Aligned_cols=19 Identities=37% Similarity=0.573 Sum_probs=15.9
Q ss_pred CCEEEE--EecCCCCcccccc
Q 008523 334 GDVALF--FGLSGTGKTTLST 352 (563)
Q Consensus 334 G~valf--FGLSGTGKTTLsa 352 (563)
+..+++ .|++|+|||||..
T Consensus 50 ~~~~li~i~G~~G~GKT~L~~ 70 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTLAK 70 (412)
T ss_dssp CEEEEEECTTCCSSSHHHHHH
T ss_pred CCEEEEeCcCcCCCCHHHHHH
Confidence 456777 9999999999875
No 488
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=62.63 E-value=2.4 Score=49.85 Aligned_cols=21 Identities=38% Similarity=0.529 Sum_probs=18.8
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
+.|..+++.|+||+|||||..
T Consensus 666 ~~GeivaI~G~nGSGKSTLl~ 686 (993)
T 2ygr_A 666 PLGVLTSVTGVSGSGKSTLVN 686 (993)
T ss_dssp ESSSEEEEECSTTSSHHHHHT
T ss_pred CCCCEEEEEcCCCCCHHHHHH
Confidence 458899999999999999875
No 489
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=62.47 E-value=2.4 Score=41.89 Aligned_cols=18 Identities=28% Similarity=0.381 Sum_probs=15.7
Q ss_pred CEEEEEecCCCCcccccc
Q 008523 335 DVALFFGLSGTGKTTLST 352 (563)
Q Consensus 335 ~valfFGLSGTGKTTLsa 352 (563)
..+++.|.+|+|||||..
T Consensus 4 ~kI~lvG~~nvGKSTL~n 21 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFN 21 (272)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 368999999999999765
No 490
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=62.47 E-value=2.9 Score=44.01 Aligned_cols=21 Identities=19% Similarity=0.257 Sum_probs=18.1
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
..|..+.|.|++|+|||||..
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n 38 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFR 38 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 457899999999999999654
No 491
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=62.02 E-value=2.3 Score=40.15 Aligned_cols=17 Identities=35% Similarity=0.645 Sum_probs=15.4
Q ss_pred EEEEEecCCCCcccccc
Q 008523 336 VALFFGLSGTGKTTLST 352 (563)
Q Consensus 336 valfFGLSGTGKTTLsa 352 (563)
.+++.|++|+|||||..
T Consensus 39 kVvlvG~~~vGKSSLl~ 55 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLAN 55 (211)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 59999999999999875
No 492
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=61.88 E-value=2.3 Score=43.56 Aligned_cols=19 Identities=16% Similarity=0.209 Sum_probs=15.8
Q ss_pred CCEEEEEecCCCCcccccc
Q 008523 334 GDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 334 G~valfFGLSGTGKTTLsa 352 (563)
+..++++|.||+|||||..
T Consensus 35 ~~~~~i~G~~G~GKs~~~~ 53 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAK 53 (392)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred cCceEEEcCCCCCHHHHHH
Confidence 3458999999999999765
No 493
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=61.83 E-value=2.8 Score=44.06 Aligned_cols=21 Identities=19% Similarity=0.344 Sum_probs=18.8
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
..|+.+++.|.+|+|||||+.
T Consensus 198 ~~G~l~ii~G~pg~GKT~lal 218 (444)
T 2q6t_A 198 GPGSLNIIAARPAMGKTAFAL 218 (444)
T ss_dssp CTTCEEEEEECTTSCHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHH
Confidence 457899999999999999876
No 494
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=61.61 E-value=2 Score=42.29 Aligned_cols=18 Identities=39% Similarity=0.508 Sum_probs=14.5
Q ss_pred CEEEEEecCCCCcccccc
Q 008523 335 DVALFFGLSGTGKTTLST 352 (563)
Q Consensus 335 ~valfFGLSGTGKTTLsa 352 (563)
..++|.|++||||||++.
T Consensus 49 ~~~L~~G~~G~GKT~la~ 66 (324)
T 3u61_B 49 HIILHSPSPGTGKTTVAK 66 (324)
T ss_dssp SEEEECSSTTSSHHHHHH
T ss_pred eEEEeeCcCCCCHHHHHH
Confidence 356777789999999865
No 495
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=61.47 E-value=2.4 Score=41.15 Aligned_cols=21 Identities=29% Similarity=0.167 Sum_probs=17.0
Q ss_pred CCCCEEEEEecCCCCcccccc
Q 008523 332 KDGDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 332 ~~G~valfFGLSGTGKTTLsa 352 (563)
..|...++.|..|+||||++.
T Consensus 10 ~~G~i~litG~mGsGKTT~ll 30 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELI 30 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHH
T ss_pred CCcEEEEEECCCCCcHHHHHH
Confidence 346789999999999999654
No 496
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=60.96 E-value=2.9 Score=42.28 Aligned_cols=19 Identities=32% Similarity=0.655 Sum_probs=15.7
Q ss_pred CCCEEEEEecCCCCccccc
Q 008523 333 DGDVALFFGLSGTGKTTLS 351 (563)
Q Consensus 333 ~G~valfFGLSGTGKTTLs 351 (563)
+....+|.|+.|+|||||.
T Consensus 22 ~~~~~~i~G~NGsGKS~ll 40 (339)
T 3qkt_A 22 KEGINLIIGQNGSGKSSLL 40 (339)
T ss_dssp CSEEEEEECCTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 3347899999999999964
No 497
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=60.67 E-value=2.5 Score=39.92 Aligned_cols=16 Identities=25% Similarity=0.316 Sum_probs=14.6
Q ss_pred EEEEecCCCCcccccc
Q 008523 337 ALFFGLSGTGKTTLST 352 (563)
Q Consensus 337 alfFGLSGTGKTTLsa 352 (563)
+++.|.+|+||||++.
T Consensus 2 ilV~Gg~~SGKS~~A~ 17 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAE 17 (180)
T ss_dssp EEEEECTTSSHHHHHH
T ss_pred EEEECCCCCcHHHHHH
Confidence 6899999999999876
No 498
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=60.29 E-value=0.8 Score=44.61 Aligned_cols=17 Identities=35% Similarity=0.470 Sum_probs=14.1
Q ss_pred EEEEEecCCCCcccccc
Q 008523 336 VALFFGLSGTGKTTLST 352 (563)
Q Consensus 336 valfFGLSGTGKTTLsa 352 (563)
.+++.|+||||||||..
T Consensus 29 ~~~i~GpnGsGKSTll~ 45 (227)
T 1qhl_A 29 VTTLSGGNGAGKSTTMA 45 (227)
T ss_dssp HHHHHSCCSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46788999999999654
No 499
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=60.27 E-value=2.9 Score=46.93 Aligned_cols=18 Identities=28% Similarity=0.604 Sum_probs=15.6
Q ss_pred CEEEEEecCCCCcccccc
Q 008523 335 DVALFFGLSGTGKTTLST 352 (563)
Q Consensus 335 ~valfFGLSGTGKTTLsa 352 (563)
..++|.|++|||||+++.
T Consensus 202 ~~vLL~G~pGtGKT~la~ 219 (758)
T 3pxi_A 202 NNPVLIGEPGVGKTAIAE 219 (758)
T ss_dssp CEEEEESCTTTTTHHHHH
T ss_pred CCeEEECCCCCCHHHHHH
Confidence 358999999999999765
No 500
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=60.07 E-value=2.8 Score=47.88 Aligned_cols=19 Identities=26% Similarity=0.384 Sum_probs=17.3
Q ss_pred CCEEEEEecCCCCcccccc
Q 008523 334 GDVALFFGLSGTGKTTLST 352 (563)
Q Consensus 334 G~valfFGLSGTGKTTLsa 352 (563)
|..+++.|++|+|||||..
T Consensus 576 g~i~~I~GpNGsGKSTlLr 594 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLR 594 (765)
T ss_dssp SCEEEEESCSSSSHHHHHH
T ss_pred CcEEEEECCCCCChHHHHH
Confidence 8899999999999999754
Done!