Query 008524
Match_columns 563
No_of_seqs 287 out of 1165
Neff 5.2
Searched_HMMs 46136
Date Thu Mar 28 13:14:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008524.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008524hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02718 Probable galacturonos 100.0 2E-138 5E-143 1126.9 43.3 535 1-545 1-551 (603)
2 PLN02829 Probable galacturonos 100.0 5E-138 1E-142 1122.2 41.0 530 4-544 1-586 (639)
3 PLN02910 polygalacturonate 4-a 100.0 8E-108 2E-112 885.7 30.7 391 154-550 192-610 (657)
4 PLN02769 Probable galacturonos 100.0 2E-105 5E-110 872.4 36.3 380 154-544 176-577 (629)
5 PLN02742 Probable galacturonos 100.0 1E-104 3E-109 854.4 33.9 384 155-544 70-482 (534)
6 PLN02870 Probable galacturonos 100.0 2.2E-89 4.7E-94 735.1 26.4 352 182-544 87-479 (533)
7 PLN02523 galacturonosyltransfe 100.0 1.4E-88 3E-93 731.0 29.9 376 157-543 80-505 (559)
8 PLN02867 Probable galacturonos 100.0 1.3E-88 2.8E-93 731.6 24.3 350 193-544 94-481 (535)
9 PLN02659 Probable galacturonos 100.0 1.1E-87 2.3E-92 722.2 25.9 352 182-544 87-480 (534)
10 cd06429 GT8_like_1 GT8_like_1 100.0 2.3E-45 4.9E-50 371.2 16.2 205 308-544 1-217 (257)
11 PRK15171 lipopolysaccharide 1, 100.0 8.4E-39 1.8E-43 334.1 17.7 212 305-540 23-240 (334)
12 cd00505 Glyco_transf_8 Members 100.0 7.8E-37 1.7E-41 304.5 16.9 211 308-542 1-217 (246)
13 cd04194 GT8_A4GalT_like A4GalT 100.0 3.4E-36 7.3E-41 299.0 19.4 211 308-542 1-213 (248)
14 cd06431 GT8_LARGE_C LARGE cata 100.0 1.1E-35 2.3E-40 304.1 19.3 209 308-540 3-223 (280)
15 cd06432 GT8_HUGT1_C_like The C 100.0 8E-36 1.7E-40 300.0 14.0 212 308-539 1-220 (248)
16 COG1442 RfaJ Lipopolysaccharid 100.0 1E-34 2.2E-39 301.8 16.6 213 307-544 2-218 (325)
17 cd06430 GT8_like_2 GT8_like_2 100.0 2.1E-33 4.6E-38 289.2 16.5 218 308-553 1-242 (304)
18 PF01501 Glyco_transf_8: Glyco 100.0 2.4E-31 5.2E-36 258.5 17.6 217 309-542 1-219 (250)
19 cd02537 GT8_Glycogenin Glycoge 99.8 9.1E-21 2E-25 189.3 14.9 174 313-541 7-185 (240)
20 PLN00176 galactinol synthase 99.8 7.8E-19 1.7E-23 183.7 16.8 200 308-540 23-238 (333)
21 cd06914 GT8_GNT1 GNT1 is a fun 99.6 2.1E-15 4.5E-20 154.8 12.8 111 393-539 75-192 (278)
22 KOG1879 UDP-glucose:glycoprote 99.1 7.9E-11 1.7E-15 137.0 9.0 217 304-539 1178-1401(1470)
23 COG5597 Alpha-N-acetylglucosam 95.7 0.0065 1.4E-07 63.6 2.7 128 398-537 155-316 (368)
24 PF03407 Nucleotid_trans: Nucl 94.0 0.071 1.5E-06 52.0 4.7 110 397-533 50-169 (212)
25 PF11051 Mannosyl_trans3: Mann 91.6 0.68 1.5E-05 47.8 8.1 108 310-435 4-114 (271)
26 PF05637 Glyco_transf_34: gala 70.7 2.6 5.6E-05 42.9 2.0 114 409-526 74-192 (239)
27 PF03071 GNT-I: GNT-I family; 70.5 13 0.00028 41.4 7.4 117 305-433 92-213 (434)
28 cd02514 GT13_GLCNAC-TI GT13_GL 70.4 18 0.0004 38.9 8.3 112 308-430 2-116 (334)
29 COG4575 ElaB Uncharacterized c 68.6 22 0.00048 32.2 7.1 75 184-260 11-86 (104)
30 PF03414 Glyco_transf_6: Glyco 61.7 1.2E+02 0.0026 32.9 12.3 199 308-539 101-311 (337)
31 KOG1928 Alpha-1,4-N-acetylgluc 61.4 3.8 8.2E-05 44.7 1.1 32 398-433 228-259 (409)
32 PRK10132 hypothetical protein; 61.0 49 0.0011 30.1 8.0 76 184-261 15-90 (108)
33 cd00761 Glyco_tranf_GTA_type G 56.6 90 0.002 26.4 8.8 42 312-355 4-45 (156)
34 TIGR02977 phageshock_pspA phag 51.1 60 0.0013 32.5 7.6 109 153-261 25-137 (219)
35 cd04186 GT_2_like_c Subfamily 46.7 1.9E+02 0.0042 25.4 9.6 88 318-434 10-98 (166)
36 PRK10807 paraquat-inducible pr 45.9 74 0.0016 36.5 8.2 45 209-257 473-517 (547)
37 PF04012 PspA_IM30: PspA/IM30 45.3 84 0.0018 31.1 7.7 108 154-261 25-136 (221)
38 cd06439 CESA_like_1 CESA_like_ 44.3 2.5E+02 0.0054 27.2 10.8 102 307-434 30-133 (251)
39 cd06423 CESA_like CESA_like is 43.7 1.7E+02 0.0038 25.3 8.7 30 317-348 9-38 (180)
40 PF00535 Glycos_transf_2: Glyc 43.6 1.8E+02 0.004 25.2 8.9 91 315-434 8-102 (169)
41 PF10819 DUF2564: Protein of u 40.7 1.5E+02 0.0032 25.7 7.2 69 188-257 6-78 (79)
42 PF04488 Gly_transf_sug: Glyco 36.7 19 0.00041 31.4 1.4 35 393-431 61-96 (103)
43 PRK10698 phage shock protein P 36.1 1.4E+02 0.003 30.2 7.6 108 153-260 25-136 (222)
44 PF04765 DUF616: Protein of un 33.9 1.1E+02 0.0025 32.6 6.8 95 336-446 91-189 (305)
45 PLN03182 xyloglucan 6-xylosylt 33.3 60 0.0013 36.1 4.7 34 392-426 179-212 (429)
46 PF06103 DUF948: Bacterial pro 31.3 1.8E+02 0.0038 24.8 6.5 61 188-254 22-82 (90)
47 PF05704 Caps_synth: Capsular 31.3 75 0.0016 33.2 4.9 100 301-433 41-143 (276)
48 cd06434 GT2_HAS Hyaluronan syn 30.9 3.9E+02 0.0085 25.4 9.6 96 309-434 3-101 (235)
49 COG0836 {ManC} Mannose-1-phosp 30.5 21 0.00045 38.4 0.7 24 471-494 186-209 (333)
50 PRK10404 hypothetical protein; 30.1 2.7E+02 0.0058 25.0 7.5 78 181-260 5-83 (101)
51 PLN02867 Probable galacturonos 29.7 1.9E+02 0.0042 33.3 8.0 77 181-259 89-167 (535)
52 COG1842 PspA Phage shock prote 28.8 1.8E+02 0.0039 29.7 7.0 101 155-258 27-134 (225)
53 cd02515 Glyco_transf_6 Glycosy 28.5 1.2E+02 0.0026 31.9 5.8 199 307-539 35-246 (271)
54 cd04190 Chitin_synth_C C-termi 28.0 1.4E+02 0.0029 29.7 6.0 25 410-434 72-97 (244)
55 PF05957 DUF883: Bacterial pro 26.9 2.8E+02 0.0061 23.9 7.0 75 185-261 2-77 (94)
56 PRK11204 N-glycosyltransferase 26.5 6.1E+02 0.013 27.1 11.1 112 305-445 53-169 (420)
57 cd04192 GT_2_like_e Subfamily 26.0 3.9E+02 0.0084 25.1 8.5 33 315-347 7-39 (229)
58 cd04196 GT_2_like_d Subfamily 22.9 5.3E+02 0.012 23.8 8.8 97 310-434 2-103 (214)
59 PLN02829 Probable galacturonos 22.1 6.8E+02 0.015 29.6 10.6 66 156-223 206-271 (639)
60 PF10146 zf-C4H2: Zinc finger- 20.7 2.8E+02 0.0061 28.4 6.7 111 170-288 17-127 (230)
61 PF03314 DUF273: Protein of un 20.7 53 0.0012 33.5 1.4 24 404-427 34-57 (222)
No 1
>PLN02718 Probable galacturonosyltransferase
Probab=100.00 E-value=2.4e-138 Score=1126.90 Aligned_cols=535 Identities=64% Similarity=0.997 Sum_probs=496.1
Q ss_pred ChhhhHHHHHHHHHHHHHHhhhceeEEecccCccccccccchhhhhhhcccccccccccccccccccccCCCcEEeeccC
Q 008524 1 MNQVRRWQRISILALLSVSVIAPVIFVSNRLKVFTSIGRWDFAEELSTTKFRAENIRLNAIEQEADEGLKEPKLVVYKDE 80 (563)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (563)
|||+|||+|++||+||||||+|||+|||+||++|||++|+||+|||++++|++|+.+|||||||++++||||++|||+|+
T Consensus 1 ~~~~~~~~r~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lk~~~~~~~~~~ 80 (603)
T PLN02718 1 MKQVRRWQRILILSLLSLSVFAPLIFVSNRLKSITPVGRKEFIEELSTIRYRTDDLRLSAIEQEEGEGLKGPKLVIYQDG 80 (603)
T ss_pred ChHHHHHHHHHHHHHHHHHHhhceeEeeccccccCccchhhhHHHHhhhccccCccccccccccccccccCceeEEeecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Cccccccccc-ccCCccccccccCccccccCCCCcchhhhhhhhhhhhcccCCCC------------ccccccccccCCC
Q 008524 81 DLGSLVSYST-STESDTKQSQYAGDTNILENNGTDEGKEENKKMKQKTASSGSRG------------KDQTNQAGARRSP 147 (563)
Q Consensus 81 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~ 147 (563)
++++.+++++ ..++|.-++ +..++..|...+++.+++|.+..+.+++ +.+.++++.++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (603)
T PLN02718 81 DFNSVVSYNSSDKNNDSLES-------EVDGGNNHKPKEEQAQVSQKTTVSSSEEVQISARDIQLNHKTQFNPPTVKHEK 153 (603)
T ss_pred CcCccccccccccccchhhh-------hccCccccccchhcccchheeecccccccccchhhhhhhhhhccCCCcccccc
Confidence 9999988754 556666444 3345557777777777777776655554 4455568889999
Q ss_pred CcccccccCchHHHHHhhHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHHHhcccCCCCcccHHHHHHHHHHHHHHHH
Q 008524 148 NVQASLLRVSDEKIKEMKDQVIRAQAYLNFAPPGSNSHLVKELKLRIKEVERAVGAATKDSDLSRRAFRRMNQMEATLDK 227 (563)
Q Consensus 148 ~~~~~~~~~~d~~~~~~~dq~~~a~ay~~~a~~~~~~~~~~el~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~ 227 (563)
+.|+++++++|++||+|||||||||||++|||++||++|+|||+++|||+||+||+++.|++||+++.++|++|+++|++
T Consensus 154 ~~~~~~~~~~d~~v~~~~dql~~ak~y~~~a~~~~~~~~~~el~~~i~e~~~~l~~~~~d~~lp~~~~~~~~~m~~~~~~ 233 (603)
T PLN02718 154 NTRVQPRRATDEKVKEIRDKIIQAKAYLNLAPPGSNSQLVKELRLRTKELERAVGDATKDKDLSKSALQRMKSMEVTLYK 233 (603)
T ss_pred cCcCCcccCcHHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccchhhhhchHHHhccCCCCCCCCCCCCCCCCCc
Q 008524 228 ASHVYPDCSAMATKLRAMTYNAEERVRLQKNQATYLVQLASRTTPKGLHCLSMQLTAEYFALQPEERHLPNQQDLHNPDL 307 (563)
Q Consensus 228 a~~~~~d~~~~~~kl~~~~~~~e~~~~~~~~~~~~~~~la~~~~Pk~~hcL~~rLt~e~~~~~~~~~~~~~~~~l~d~~~ 307 (563)
||+++|||++|++|||||++++||++++||+|++|++||||+|+|||||||+||||+|||...+..+++|+.++|+||+.
T Consensus 234 a~~~~~d~~~~~~klr~~~~~~e~~~~~~~~q~~~~~~laa~~~PK~lhCL~~rLt~ey~~~~~~~~~~~~~~~l~d~~~ 313 (603)
T PLN02718 234 ASRVFPNCPAIATKLRAMTYNTEEQVRAQKNQAAYLMQLAARTTPKGLHCLSMRLTAEYFALDPEKRQLPNQQRYNDPDL 313 (603)
T ss_pred HHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccchhhHHHHhhCChhhccCCChhhccCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999998899999999999999
Q ss_pred eeEEEEeCcchhhHHHHHHHHhhcCCCCceEEEEEeCCCCHHHHHHHHhhCCCCCceEEEEEccCCccchhhhhhhhhcc
Q 008524 308 HHYAVFSDNVLACAVVVNSTVSFAKEPEKIVFHVVTDSLNLPAISMWFLLNPPGKATIQIQSIDNFNWLSTKYNATLKKE 387 (563)
Q Consensus 308 iHIv~~sDnvLaasVvI~Siv~Ns~~p~~i~FHIltd~is~~~mk~wf~~n~~~~a~Ie~i~i~~~~~l~~~~~~vl~~l 387 (563)
+|||+++||++++||+|+|++.|+++|++++|||+||++++++|+.||..++..+++|+|+++++|.|++.+|.++++++
T Consensus 314 ~Hia~~sDNvlaasVvInSil~Ns~np~~ivFHVvTD~is~~~mk~wf~l~~~~~a~I~V~~Iddf~~lp~~~~~~lk~l 393 (603)
T PLN02718 314 YHYVVFSDNVLACSVVVNSTISSSKEPEKIVFHVVTDSLNYPAISMWFLLNPPGKATIQILNIDDMNVLPADYNSLLMKQ 393 (603)
T ss_pred eeEEEEcCCceeEEEEhhhhhhccCCCCcEEEEEEeCCCCHHHHHHHHHhCCCCCcEEEEEecchhccccccchhhhhhc
Confidence 99999999999999999999999888889999999999999999999999888899999999999999998888888888
Q ss_pred CCCCCCCCchhhhhhhcccccccCCCeEEEEecceeeccChHHHhccCCCCCEEEEeecccchhhHHHhhhhccCCCChh
Q 008524 388 NSHDPRYTSALNHLRFYLPDVFPALNKVLLFDHDVVVQSDLGRLWNIDMKGKVIGAVDTCKESEASFRRMDLFINFSDPL 467 (563)
Q Consensus 388 ~s~~~~~iS~~~y~RL~LPeLLP~ldKVLYLD~DVIVq~DLseLw~iDL~GkviaAV~Dc~~~~~~~~r~~~~LnfsnP~ 467 (563)
++.+++|+|+++|+||+||++||+++||||||+||||++||++||++||+|+++|||+||......+++++.++||++|.
T Consensus 394 ~s~~~~~~S~~~y~Rl~ipellp~l~KvLYLD~DvVV~~DL~eL~~iDl~~~v~aaVedC~~~~~~~~~~~~~lnfs~p~ 473 (603)
T PLN02718 394 NSHDPRYISALNHARFYLPDIFPGLNKIVLFDHDVVVQRDLSRLWSLDMKGKVVGAVETCLEGEPSFRSMDTFINFSDPW 473 (603)
T ss_pred cccccccccHHHHHHHHHHHHhcccCEEEEEECCEEecCCHHHHhcCCCCCcEEEEeccccccccchhhhhhhhhccchh
Confidence 87778899999999999999999999999999999999999999999999999999999975332456777889999999
Q ss_pred hhhhCCCCCCceeehhhHccHHHHHhhcHHHHHHHHHHHcccccccCCChHHHH---HHhhccceecCcccccccccccc
Q 008524 468 IAKKFDVKACTWAFGMNLFDLQEWRKRKLTAVYHKYLQLVCEYLRFCLNLHFLA---LLIASLCYLLEQYILVYHNILND 544 (563)
Q Consensus 468 i~~~f~~~~cYFNSGVlLiDLkkWRe~nitek~l~~l~~n~~~ll~~dDQDiLN---~vf~g~v~~Ld~~rWN~~gl~~~ 544 (563)
+.++|++++||||+|||||||++||++++++++++|++++.++.+| |||+|| ++|.|+|++||+ +||+.|+|.+
T Consensus 474 i~~~fn~~~CyfNsGVlLIDLk~WReenITe~~~~~l~~n~~~~l~--dqdaLpp~LlvF~gri~~LD~-rWNv~gLG~~ 550 (603)
T PLN02718 474 VAKKFDPKACTWAFGMNLFDLEEWRRQKLTSVYHKYLQLGVKRPLW--KAGSLPIGWLTFYNQTVALDK-RWHVLGLGHE 550 (603)
T ss_pred hhcccCCCccccccceEEEeHHHHHhcChHHHHHHHHHhccCcccc--CcccccHHHHHhcCceeecCh-HHhccCcccc
Confidence 8889999999999999999999999999999999999998776444 467665 999999999999 9999998854
Q ss_pred c
Q 008524 545 Y 545 (563)
Q Consensus 545 ~ 545 (563)
.
T Consensus 551 ~ 551 (603)
T PLN02718 551 S 551 (603)
T ss_pred c
Confidence 4
No 2
>PLN02829 Probable galacturonosyltransferase
Probab=100.00 E-value=5.4e-138 Score=1122.23 Aligned_cols=530 Identities=43% Similarity=0.752 Sum_probs=474.7
Q ss_pred hhHHHHHHHHHHHHHHhhhceeEEecccCc-cccccccchhhhhhhcccccccccccccccccccccCCCcEEeeccCCc
Q 008524 4 VRRWQRISILALLSVSVIAPVIFVSNRLKV-FTSIGRWDFAEELSTTKFRAENIRLNAIEQEADEGLKEPKLVVYKDEDL 82 (563)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (563)
+|||+|++||+||||||+|||+|||+||++ |||++++||+|||+++++++|+.+|||||||++++||||++|||+|+++
T Consensus 1 ~~~~~r~~~~~~l~~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lk~p~~~~~~~~~~ 80 (639)
T PLN02829 1 MRMRLRNLVLGLLLLTVLSPILLYTDRLSASFTPSSKRDFLEDVTALTLGGDASKLNVLPQESSSSLKEPIGIVYSDNSS 80 (639)
T ss_pred CcHHHHHHHHHHHHHHHhhceeEEecccccccCCcchhhhhHHHHhhccCccchhcccccccccccccCceeEEeecccc
Confidence 589999999999999999999999999998 9999999999999999999999999999999999999999999999987
Q ss_pred cccccc---------------ccccCCccccccccCcccccc---CCCCcchhhhhh------------hhhhhhcccCC
Q 008524 83 GSLVSY---------------STSTESDTKQSQYAGDTNILE---NNGTDEGKEENK------------KMKQKTASSGS 132 (563)
Q Consensus 83 ~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~------------~~~~~~~~~~~ 132 (563)
+..... -.+.++|+++|+.++.|+|+- ++..+..++.++ +.+|...++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (639)
T PLN02829 81 KTIEPDSQDLLLDKRGEHKARVLSATDDDTHSQTDDIIKQVTQKAGQDDSDQQEKNSQSQSASQAESLEHVQQSAQTSEK 160 (639)
T ss_pred ccccccccccccccccchhhhhccccccccccccchhHHHhhhcccccccccccccccccccccccchhhhhhhhccccc
Confidence 743221 235578999999999999983 111111111111 11111111111
Q ss_pred CCcccccc-ccccCCCCcccccccCchHHHHHhhHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHHHhcccCCCCccc
Q 008524 133 RGKDQTNQ-AGARRSPNVQASLLRVSDEKIKEMKDQVIRAQAYLNFAPPGSNSHLVKELKLRIKEVERAVGAATKDSDLS 211 (563)
Q Consensus 133 ~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~~~~~dq~~~a~ay~~~a~~~~~~~~~~el~~~~~e~~~~~~~~~~~~~~~ 211 (563)
.+. +.. .+.++.|..+ ..++|++||+|||||||||||++|||+++|++|+|||+++|||+||+||+++.|++||
T Consensus 161 ~~~--~~~~~~~~~~~~~~---~~~~d~~v~~lkDql~~AkaY~~iak~~~~~~l~~el~~~i~e~~r~l~~a~~d~~lp 235 (639)
T PLN02829 161 VDE--KEPLLTKTDKQTDQ---TVMPDARVRQLRDQLIKAKVYLSLPATKANPHFTRELRLRIKEVQRVLGDASKDSDLP 235 (639)
T ss_pred ccc--cccccccccccccc---ccCchHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHhhccCCCCCC
Confidence 111 111 2222333333 3579999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccchhhhhchHHHhccCC
Q 008524 212 RRAFRRMNQMEATLDKASHVYPDCSAMATKLRAMTYNAEERVRLQKNQATYLVQLASRTTPKGLHCLSMQLTAEYFALQP 291 (563)
Q Consensus 212 ~~~~~~~~~m~~~~~~a~~~~~d~~~~~~kl~~~~~~~e~~~~~~~~~~~~~~~la~~~~Pk~~hcL~~rLt~e~~~~~~ 291 (563)
+++.++|++|+++|++||+++|||+++++|||+|++++||++++||+|++||+||||+|+|||||||+||||+|||.+.+
T Consensus 236 ~~~~~~~~~m~~~i~~ak~~~~d~~~~~~KLr~~l~~~Ee~~~~~~~q~~~l~~laa~t~PK~lHCL~mrLt~Ey~~~~~ 315 (639)
T PLN02829 236 KNANEKLKAMEQTLAKGKQMQDDCSIVVKKLRAMLHSAEEQLRVHKKQTMFLTQLTAKTLPKGLHCLPLRLTTEYYNLNS 315 (639)
T ss_pred hhHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCccccchhhHHHHHhCCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCceeEEEEeCcchhhHHHHHHHHhhcCCCCceEEEEEeCCCCHHHHHHHHhhCCCCCceEEEEEcc
Q 008524 292 EERHLPNQQDLHNPDLHHYAVFSDNVLACAVVVNSTVSFAKEPEKIVFHVVTDSLNLPAISMWFLLNPPGKATIQIQSID 371 (563)
Q Consensus 292 ~~~~~~~~~~l~d~~~iHIv~~sDnvLaasVvI~Siv~Ns~~p~~i~FHIltd~is~~~mk~wf~~n~~~~a~Ie~i~i~ 371 (563)
..+++|+.++|+||+++|||++|||+||++|||+|++.|+++|++++||||||.+++.+|++||.+|++++++|+|.+++
T Consensus 316 ~~~~~p~~~~l~dp~l~Hy~ifSdNVLAasVVVnStv~na~~p~k~VFHivTD~~ny~aM~~WF~~n~~~~A~v~V~nie 395 (639)
T PLN02829 316 SEQQFPNQEKLEDPQLYHYALFSDNVLAAAVVVNSTVTNAKHPSKHVFHIVTDRLNYAAMRMWFLVNPPGKATIQVQNIE 395 (639)
T ss_pred hhccCCChhhccCCccceEEEEecceeEEEeeeehhhhcccCccceEEEEecCccchHHHHHHHhhCCCccceEEEEehh
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccchhhhhhhhhccCC---------------------CCCCCCchhhhhhhcccccccCCCeEEEEecceeeccChHH
Q 008524 372 NFNWLSTKYNATLKKENS---------------------HDPRYTSALNHLRFYLPDVFPALNKVLLFDHDVVVQSDLGR 430 (563)
Q Consensus 372 ~~~~l~~~~~~vl~~l~s---------------------~~~~~iS~~~y~RL~LPeLLP~ldKVLYLD~DVIVq~DLse 430 (563)
+|+|++.+|+||++++++ ++++|+|.++|+|||||++||+++||||||+||||++||++
T Consensus 396 ~f~wln~~~~pvl~ql~~~~~~~~yf~~~~~~~~~~~k~r~p~ylS~lnY~RfyLPeLLP~LdKVLYLD~DVVVqgDLse 475 (639)
T PLN02829 396 EFTWLNSSYSPVLKQLGSQSMIDYYFRAHRANSDSNLKYRNPKYLSILNHLRFYLPEIFPKLNKVLFLDDDIVVQKDLTG 475 (639)
T ss_pred hcccccccccHHHHHhhhhhhhhhhhhccccCcccccccCCcchhhHHHHHHHHHHHHhcccCeEEEEeCCEEeCCChHH
Confidence 999999999999998864 46899999999999999999999999999999999999999
Q ss_pred HhccCCCCCEEEEeecccchhhHHHhhhhccCCCChhhhhhCCCCCCceeehhhHccHHHHHhhcHHHHHHHHHHHcccc
Q 008524 431 LWNIDMKGKVIGAVDTCKESEASFRRMDLFINFSDPLIAKKFDVKACTWAFGMNLFDLQEWRKRKLTAVYHKYLQLVCEY 510 (563)
Q Consensus 431 Lw~iDL~GkviaAV~Dc~~~~~~~~r~~~~LnfsnP~i~~~f~~~~cYFNSGVlLiDLkkWRe~nitek~l~~l~~n~~~ 510 (563)
||++||+|+++|||+||.. .+++++.+++|++|.+..+|++..||||+|||||||++||++++|++++.|++.+.++
T Consensus 476 Lw~iDL~gkviAAVedc~~---~f~r~~~~l~fs~p~i~~~Fn~~~CyFNSGVmVINL~~WRe~nITe~y~~wm~~n~~r 552 (639)
T PLN02829 476 LWSIDLKGNVNGAVETCGE---SFHRFDRYLNFSNPLISKNFDPHACGWAYGMNVFDLDEWKRQNITEVYHSWQKLNHDR 552 (639)
T ss_pred HHhCCCCCceEEEeccchh---hhhhhhhhhhccchHhhhccCCcccceecceEEEeHHHHHHhChHHHHHHHHHHccCC
Confidence 9999999999999999987 6788999999999999889999999999999999999999999999999999999887
Q ss_pred cccCCChHHHHH---HhhccceecCcccccccccccc
Q 008524 511 LRFCLNLHFLAL---LIASLCYLLEQYILVYHNILND 544 (563)
Q Consensus 511 ll~~dDQDiLN~---vf~g~v~~Ld~~rWN~~gl~~~ 544 (563)
.+|. |++||. +|.|++++||+ +||++|+|.+
T Consensus 553 ~L~d--lgaLPp~Ll~F~g~i~~LD~-rWNv~GLGy~ 586 (639)
T PLN02829 553 QLWK--LGTLPPGLITFWKRTYPLDR-SWHVLGLGYN 586 (639)
T ss_pred cccc--ccCCChHHHHhcCceEecCh-hheecCCCCC
Confidence 7754 666665 47999999999 9999998854
No 3
>PLN02910 polygalacturonate 4-alpha-galacturonosyltransferase
Probab=100.00 E-value=8e-108 Score=885.71 Aligned_cols=391 Identities=47% Similarity=0.802 Sum_probs=374.2
Q ss_pred ccCchHHHHHhhHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHHHhcccCCCCcccHHHHHHHHHHHHHHHHhhcccc
Q 008524 154 LRVSDEKIKEMKDQVIRAQAYLNFAPPGSNSHLVKELKLRIKEVERAVGAATKDSDLSRRAFRRMNQMEATLDKASHVYP 233 (563)
Q Consensus 154 ~~~~d~~~~~~~dq~~~a~ay~~~a~~~~~~~~~~el~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~a~~~~~ 233 (563)
.+++|++||+|||||||||||++|||++||++|+|||+++|||+||+||+++.|++||+++.++|++|+++|++||+++|
T Consensus 192 ~~~~d~~vk~lkDQl~~AkaY~~iak~~~~~~l~~eL~~~i~e~~r~ls~a~~d~dlp~~~~~k~~~M~~~l~~ak~~~~ 271 (657)
T PLN02910 192 SPNSDSILKLMRDQIIMAKAYANIAKSNNVTNLYVSLMKQFRENKRAIGEATSDAELHSSALDQAKAMGHVLSIAKDQLY 271 (657)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHhhcccccccCchHHHHHHHHHHHHHHHHhccc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccchhhhhchHHHhccCCCCCCCCCCCCCCCCCceeEEEE
Q 008524 234 DCSAMATKLRAMTYNAEERVRLQKNQATYLVQLASRTTPKGLHCLSMQLTAEYFALQPEERHLPNQQDLHNPDLHHYAVF 313 (563)
Q Consensus 234 d~~~~~~kl~~~~~~~e~~~~~~~~~~~~~~~la~~~~Pk~~hcL~~rLt~e~~~~~~~~~~~~~~~~l~d~~~iHIv~~ 313 (563)
||+++++|||||++++||++++||+|++||+||||+|+|||||||+||||+|||.+.+..+++|+.++|+||+++|||++
T Consensus 272 d~~~~~~KLraml~~~Ee~~~~~k~qs~~l~qlaa~t~PK~lHCL~mRLt~Ey~~~~~~~~~~p~~~~l~dp~l~Hy~if 351 (657)
T PLN02910 272 DCHTMARKLRAMLQSTERKVDALKKKSAFLIQLAAKTVPKPLHCLPLQLAADYFLLGFQNKDYVNKKKLEDPSLYHYAIF 351 (657)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccchhhHHHHHhCchhhccCCChhhccCCcceeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999888999999999999999999
Q ss_pred eCcchhhHHHHHHHHhhcCCCCceEEEEEeCCCCHHHHHHHHhhCCCCCceEEEEEccCCccchhhhhhhhhccCC----
Q 008524 314 SDNVLACAVVVNSTVSFAKEPEKIVFHVVTDSLNLPAISMWFLLNPPGKATIQIQSIDNFNWLSTKYNATLKKENS---- 389 (563)
Q Consensus 314 sDnvLaasVvI~Siv~Ns~~p~~i~FHIltd~is~~~mk~wf~~n~~~~a~Ie~i~i~~~~~l~~~~~~vl~~l~s---- 389 (563)
|||+||++|||+|++.|+++|++++||||||.+++.+|++||.+|++++++|+|.++++|+|++.+|+|+++++++
T Consensus 352 SDNVLAaSVVVnSTv~na~~P~k~VFHiVTD~~ny~aM~~WF~~n~~~~A~V~V~nie~f~wln~~~~pvl~qles~~~~ 431 (657)
T PLN02910 352 SDNVLATSVVVNSTVLHAKEPQKHVFHIVTDKLNFAAMKMWFIINPPAKATIQVENIDDFKWLNSSYCSVLRQLESARIK 431 (657)
T ss_pred ecceeeEEeehhhhhhcccCccceEEEEecCccccHHHHHHHhhCCCccceEEEeehhhcccccccccHHHHHHhhhhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988654
Q ss_pred ---------------------CCCCCCchhhhhhhcccccccCCCeEEEEecceeeccChHHHhccCCCCCEEEEeeccc
Q 008524 390 ---------------------HDPRYTSALNHLRFYLPDVFPALNKVLLFDHDVVVQSDLGRLWNIDMKGKVIGAVDTCK 448 (563)
Q Consensus 390 ---------------------~~~~~iS~~~y~RL~LPeLLP~ldKVLYLD~DVIVq~DLseLw~iDL~GkviaAV~Dc~ 448 (563)
++++|+|+++|+|||||++||+++||||||+||||++||++||++||+|+++|||+||.
T Consensus 432 ~~yf~~~~~~~~~~~~~~~k~r~p~ylS~lnY~Rf~LPelLp~l~KVLYLD~DVVV~gDLseLw~iDL~g~v~AAVedc~ 511 (657)
T PLN02910 432 EYYFKANHPSSLSAGADNLKYRNPKYLSMLNHLRFYLPEVYPKLEKILFLDDDIVVQKDLTPLWSIDMQGMVNGAVETCK 511 (657)
T ss_pred hhhhhccccccccccccccccCCcchhhHHHHHHHHHHHHhhhcCeEEEEeCCEEecCchHHHHhCCcCCceEEEecccc
Confidence 45889999999999999999999999999999999999999999999999999999998
Q ss_pred chhhHHHhhhhccCCCChhhhhhCCCCCCceeehhhHccHHHHHhhcHHHHHHHHHHHcccccccCCChHHHH---HHhh
Q 008524 449 ESEASFRRMDLFINFSDPLIAKKFDVKACTWAFGMNLFDLQEWRKRKLTAVYHKYLQLVCEYLRFCLNLHFLA---LLIA 525 (563)
Q Consensus 449 ~~~~~~~r~~~~LnfsnP~i~~~f~~~~cYFNSGVlLiDLkkWRe~nitek~l~~l~~n~~~ll~~dDQDiLN---~vf~ 525 (563)
. .+++++.+++|++|.++++|++++||||+|||||||++||++++|+.+..|++.+.+..+| ||++|| ++|.
T Consensus 512 ~---~f~r~~~ylnfs~P~i~~yFNs~aCyfNsGVmVIDL~~WRe~nITe~ye~w~eln~~~~L~--dqgsLPpgLLvF~ 586 (657)
T PLN02910 512 E---SFHRFDKYLNFSNPKISENFDPNACGWAFGMNMFDLKEWRKRNITGIYHYWQDLNEDRTLW--KLGSLPPGLITFY 586 (657)
T ss_pred h---hhhhhhhhhccCChhhhhccCCCCceeecccEEEeHHHHHHhhHHHHHHHHHHhccccccc--ccCCCChHHHHHh
Confidence 7 6789999999999999999999999999999999999999999999999999988765554 588888 7999
Q ss_pred ccceecCcccccccccccccccccc
Q 008524 526 SLCYLLEQYILVYHNILNDYLQVSC 550 (563)
Q Consensus 526 g~v~~Ld~~rWN~~gl~~~~l~~~~ 550 (563)
|++++||+ +||++|+|.+.....|
T Consensus 587 g~i~pLD~-rWNv~GLGyd~~v~~~ 610 (657)
T PLN02910 587 NLTYPLDR-SWHVLGLGYDPALNQT 610 (657)
T ss_pred CceeecCc-hheecCCCCCcccccc
Confidence 99999999 9999999976544444
No 4
>PLN02769 Probable galacturonosyltransferase
Probab=100.00 E-value=2.3e-105 Score=872.40 Aligned_cols=380 Identities=35% Similarity=0.580 Sum_probs=352.9
Q ss_pred ccCchHHHHHhhHHHHHHHHHH-hhCCCCCCchHHHHHHHHHHHHHHHhcccCCCCcccHHHHHHHHHHHHHHHHhhccc
Q 008524 154 LRVSDEKIKEMKDQVIRAQAYL-NFAPPGSNSHLVKELKLRIKEVERAVGAATKDSDLSRRAFRRMNQMEATLDKASHVY 232 (563)
Q Consensus 154 ~~~~d~~~~~~~dq~~~a~ay~-~~a~~~~~~~~~~el~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~a~~~~ 232 (563)
..++|++||+|||||||||||+ +|||++||++|+|||+++|||+||+|||++.|+|||+++.++|++|+++|++||++.
T Consensus 176 ~~~~d~~~~~l~Dql~~Ak~y~~~iak~~~~~~l~~el~~~i~e~~~~l~~~~~d~dlp~~~~~~~~~m~~~~~~ak~~~ 255 (629)
T PLN02769 176 EVMKDSIVKRLKDQLFVARAYYPSIAKLPGQEKLTRELKQNIQEHERVLSESITDADLPPFIQKKLEKMEQTIARAKSCP 255 (629)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHHhhccccccCChhHHHHHHHHHHHHHHHHhhc
Confidence 4689999999999999999997 999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccchhhhhchHHHhccCCCCCCCCCCCCCCCCCceeEEE
Q 008524 233 PDCSAMATKLRAMTYNAEERVRLQKNQATYLVQLASRTTPKGLHCLSMQLTAEYFALQPEERHLPNQQDLHNPDLHHYAV 312 (563)
Q Consensus 233 ~d~~~~~~kl~~~~~~~e~~~~~~~~~~~~~~~la~~~~Pk~~hcL~~rLt~e~~~~~~~~~~~~~~~~l~d~~~iHIv~ 312 (563)
|||++|++|||||++++||++++|++|++||+||||+|+|||||||+||||+|||.+.+..+++|+.++|+||+++|||+
T Consensus 256 ~dc~~~~~klr~~l~~~E~~~~~~~kq~~~l~~laa~t~PK~lHCL~mrLt~ey~~~~~~~~~~~~~~~l~d~~l~Hy~i 335 (629)
T PLN02769 256 VDCNNVDRKLRQILDMTEDEAHFHMKQSAFLYQLGVQTMPKSHHCLSMRLTVEYFKSSSLDMEDSNSEKFSDPSLRHYVI 335 (629)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccchhhHHHHHhCchhhccCCchhhccCCccceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCcchhhHHHHHHHHhhcCCCCceEEEEEeCCCCHHHHHHHHhhCCCCCceEEEEEccCCccchhhhhhhhhccCC---
Q 008524 313 FSDNVLACAVVVNSTVSFAKEPEKIVFHVVTDSLNLPAISMWFLLNPPGKATIQIQSIDNFNWLSTKYNATLKKENS--- 389 (563)
Q Consensus 313 ~sDnvLaasVvI~Siv~Ns~~p~~i~FHIltd~is~~~mk~wf~~n~~~~a~Ie~i~i~~~~~l~~~~~~vl~~l~s--- 389 (563)
+|||++|++|+|||++.|+++|++++||||||..++.+|++||..+++++++|+|.++++|+|.+. .+++++++.+
T Consensus 336 fSdNvlAasvvvNStv~na~~p~~~VFHiVTD~~n~~am~~WF~~n~~~~a~v~v~n~e~~~~~~~-~~~~~~~l~~~~~ 414 (629)
T PLN02769 336 FSKNVLAASVVINSTVVHSRESGNIVFHVLTDAQNYYAMKHWFDRNSYKEAAVQVLNIEDLILKDL-DKFALKQLSLPEE 414 (629)
T ss_pred EeccceeeeeehhhhhhhccCccceEEEEecChhhHHHHHHHHhcCCCccceEEEeeeeeeeeccc-chHHHHhhccchh
Confidence 999999999999999999999999999999999999999999999999999999999999998653 3456665531
Q ss_pred ---------------CCCCCCchhhhhhhcccccccCCCeEEEEecceeeccChHHHhccCCCCCEEEEeecccchhhHH
Q 008524 390 ---------------HDPRYTSALNHLRFYLPDVFPALNKVLLFDHDVVVQSDLGRLWNIDMKGKVIGAVDTCKESEASF 454 (563)
Q Consensus 390 ---------------~~~~~iS~~~y~RL~LPeLLP~ldKVLYLD~DVIVq~DLseLw~iDL~GkviaAV~Dc~~~~~~~ 454 (563)
++++|+|+++|+|||||++||+++||||||+||||++||++||++||+|+++|||+||.. .+
T Consensus 415 ~~~~~~~~~~~~~~~~~~eyiS~~nh~RfyIPELLP~LdKVLYLD~DVVVqgDLseLw~iDL~gkviAAVedc~~---rl 491 (629)
T PLN02769 415 FRVSFRSVDNPSSKQMRTEYLSVFSHSHFLLPEIFKKLKKVVVLDDDVVVQRDLSFLWNLDMGGKVNGAVQFCGV---RL 491 (629)
T ss_pred hhhhhccCCCCchhccCcccccHHHHHHHHHHHHhhhcCeEEEEeCCEEecCcHHHHhcCCCCCCeEEEehhhhh---hh
Confidence 368999999999999999999999999999999999999999999999999999999975 55
Q ss_pred HhhhhccCCCChhhhhhCCCCCCceeehhhHccHHHHHhhcHHHHHHHHHHHccc--ccccCC-ChHHHHHHhhccceec
Q 008524 455 RRMDLFINFSDPLIAKKFDVKACTWAFGMNLFDLQEWRKRKLTAVYHKYLQLVCE--YLRFCL-NLHFLALLIASLCYLL 531 (563)
Q Consensus 455 ~r~~~~LnfsnP~i~~~f~~~~cYFNSGVlLiDLkkWRe~nitek~l~~l~~n~~--~ll~~d-DQDiLN~vf~g~v~~L 531 (563)
.+++.|++ ..+|++++||||+|||||||++||++++++++++|++++.. ...|.. +|+++|++|.|+|++|
T Consensus 492 ~~~~~yl~------~~~F~~~~CyFNSGVLLINL~~WRk~nITe~~~~~~~~~~~~~~~~~~~~~Lp~lnlvF~g~v~~L 565 (629)
T PLN02769 492 GQLKNYLG------DTNFDTNSCAWMSGLNVIDLDKWRELDVTETYLKLLQKFSKDGEESLRAAALPASLLTFQDLIYPL 565 (629)
T ss_pred hhhhhhhc------ccCCCccccccccCeeEeeHHHHHHhCHHHHHHHHHHHhhhcccccccccCcCHHHHHhcCeEEEC
Confidence 56655543 24688899999999999999999999999999999987643 233322 7899999999999999
Q ss_pred Ccccccccccccc
Q 008524 532 EQYILVYHNILND 544 (563)
Q Consensus 532 d~~rWN~~gl~~~ 544 (563)
|+ +||+.|+|.+
T Consensus 566 D~-rWNv~gLG~~ 577 (629)
T PLN02769 566 DD-RWVLSGLGHD 577 (629)
T ss_pred CH-HHcccccccc
Confidence 99 9999888754
No 5
>PLN02742 Probable galacturonosyltransferase
Probab=100.00 E-value=1.2e-104 Score=854.40 Aligned_cols=384 Identities=38% Similarity=0.622 Sum_probs=365.7
Q ss_pred cCchHHHHHhhHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHHHhcccCCCCcc--cHHHHHHHHHHHHHHHHhhccc
Q 008524 155 RVSDEKIKEMKDQVIRAQAYLNFAPPGSNSHLVKELKLRIKEVERAVGAATKDSDL--SRRAFRRMNQMEATLDKASHVY 232 (563)
Q Consensus 155 ~~~d~~~~~~~dq~~~a~ay~~~a~~~~~~~~~~el~~~~~e~~~~~~~~~~~~~~--~~~~~~~~~~m~~~~~~a~~~~ 232 (563)
.++|++||+|||||||||||++|||++||++|+|||+++|||+||+||+++.|+++ |+++.++|+.|+++|++||+++
T Consensus 70 ~~~~~~~~~l~dql~~Ak~y~~ia~~~~~~~l~~el~~~i~e~~~~l~~a~~d~~~~~~~~~~~~~~~m~~~i~~ak~~~ 149 (534)
T PLN02742 70 LSATSFSRQLADQITLAKAYVVIAKEHNNLQLAWELSAQIRNCQLLLSKAATRGEPITVEEAEPIIRDLAALIYQAQDLH 149 (534)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHHhcc
Confidence 56899999999999999999999999999999999999999999999999998876 3799999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccchhhhhchHHHhccCCC---CCCCCCCCCCCCCCcee
Q 008524 233 PDCSAMATKLRAMTYNAEERVRLQKNQATYLVQLASRTTPKGLHCLSMQLTAEYFALQPE---ERHLPNQQDLHNPDLHH 309 (563)
Q Consensus 233 ~d~~~~~~kl~~~~~~~e~~~~~~~~~~~~~~~la~~~~Pk~~hcL~~rLt~e~~~~~~~---~~~~~~~~~l~d~~~iH 309 (563)
|||+++++|||+|++++||++++||+|++|++||||+|+|||||||+||||+|||.+.+. .++++++++|+||+++|
T Consensus 150 ~d~~~~~~klr~~l~~~e~~~~~~~~q~~~~~~laa~t~PK~lHCL~mrLt~ey~~~~~~~~~~~~~~~~~~l~d~~l~H 229 (534)
T PLN02742 150 YDSATTIMTLKAHIQALEERANAATVQSTKFGQLAAEALPKSLYCLGVRLTTEWFKNPKLQRKAEEKRNSPRLVDNNLYH 229 (534)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccchHhHHHHHhCchhhhccccccccccccCCCcce
Confidence 999999999999999999999999999999999999999999999999999999999876 57788999999999999
Q ss_pred EEEEeCcchhhHHHHHHHHhhcCCCCceEEEEEeCCCCHHHHHHHHhhCCCCCceEEEEEccCCccchhhhhhhhhccCC
Q 008524 310 YAVFSDNVLACAVVVNSTVSFAKEPEKIVFHVVTDSLNLPAISMWFLLNPPGKATIQIQSIDNFNWLSTKYNATLKKENS 389 (563)
Q Consensus 310 Iv~~sDnvLaasVvI~Siv~Ns~~p~~i~FHIltd~is~~~mk~wf~~n~~~~a~Ie~i~i~~~~~l~~~~~~vl~~l~s 389 (563)
+|++|||++|++|+|||++.|+++|++++||||||..++.+|+.||..+++++++|+|+++++|+|++.+|+||++++++
T Consensus 230 y~ifSdNvlAasvvvnStv~nsk~P~~~VFHiVTD~~n~~aM~~WF~~n~~~~a~v~V~n~e~f~wl~~~~~pvl~ql~~ 309 (534)
T PLN02742 230 FCVFSDNILATSVVVNSTVSNAKHPDQLVFHLVTDEVNYGAMQAWFAMNDFKGVTVEVQKIEEFSWLNASYVPVLKQLQD 309 (534)
T ss_pred EEEEeccchhhhhhhhhhHhhhcCCCcEEEEEeechhhHHHHHHHHhhCCCCccEEEEEEeccccccccccchHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988764
Q ss_pred ---------------------CCCCCCchhhhhhhcccccccCCCeEEEEecceeeccChHHHhccCCCCCEEEEeeccc
Q 008524 390 ---------------------HDPRYTSALNHLRFYLPDVFPALNKVLLFDHDVVVQSDLGRLWNIDMKGKVIGAVDTCK 448 (563)
Q Consensus 390 ---------------------~~~~~iS~~~y~RL~LPeLLP~ldKVLYLD~DVIVq~DLseLw~iDL~GkviaAV~Dc~ 448 (563)
++++|+|+.+|+|||||++||+++||||||+||||++||++||++||+|+++|||+||.
T Consensus 310 ~~~~~~yf~~~~~~~~~~~k~r~p~y~s~~~y~R~~lP~llp~l~KvlYLD~DvVV~~DL~eL~~~DL~~~viaAVedC~ 389 (534)
T PLN02742 310 SDTQSYYFSGSQDDGKTEIKFRNPKYLSMLNHLRFYIPEIYPALEKVVFLDDDVVVQKDLTPLFSIDLHGNVNGAVETCL 389 (534)
T ss_pred hhhhhhhcccccccccccccccCcccccHHHHHHHHHHHHhhccCeEEEEeCCEEecCChHHHhcCCCCCCEEEEeCchh
Confidence 34899999999999999999999999999999999999999999999999999999998
Q ss_pred chhhHHHhhhhccCCCChhhhhhCCCCCCceeehhhHccHHHHHhhcHHHHHHHHHHHcccccccCCChHHHH---HHhh
Q 008524 449 ESEASFRRMDLFINFSDPLIAKKFDVKACTWAFGMNLFDLQEWRKRKLTAVYHKYLQLVCEYLRFCLNLHFLA---LLIA 525 (563)
Q Consensus 449 ~~~~~~~r~~~~LnfsnP~i~~~f~~~~cYFNSGVlLiDLkkWRe~nitek~l~~l~~n~~~ll~~dDQDiLN---~vf~ 525 (563)
. .+++|..|+||++|.++.+|++++||||+|||||||++||++++|+.++.|++.+.+..+| ||++|| ++|.
T Consensus 390 ~---~f~ry~~yLnfS~p~i~~~f~~~aC~fNsGV~ViDL~~WRe~nITe~~~~w~e~n~~~~l~--d~gaLpp~LLaF~ 464 (534)
T PLN02742 390 E---TFHRYHKYLNFSHPLISSHFDPDACGWAFGMNVFDLVAWRKANVTAIYHYWQEQNVDRTLW--KLGTLPPGLLTFY 464 (534)
T ss_pred h---hhhhhhhhhcccchhhhccCCCCccccccCcEEEeHHHHHhhcHHHHHHHHHHhccccccc--cccccchHHHHHc
Confidence 7 7899999999999999999999999999999999999999999999999999988766555 366666 5699
Q ss_pred ccceecCcccccccccccc
Q 008524 526 SLCYLLEQYILVYHNILND 544 (563)
Q Consensus 526 g~v~~Ld~~rWN~~gl~~~ 544 (563)
|++++||+ +||+.|+|.+
T Consensus 465 g~~~~LD~-rWNv~gLG~~ 482 (534)
T PLN02742 465 GLTEPLDR-RWHVLGLGYD 482 (534)
T ss_pred CcceecCh-hheecccccc
Confidence 99999999 9999998864
No 6
>PLN02870 Probable galacturonosyltransferase
Probab=100.00 E-value=2.2e-89 Score=735.15 Aligned_cols=352 Identities=35% Similarity=0.625 Sum_probs=323.5
Q ss_pred CCchHHHHHHHHHHHHHHHhcccCCCCcccHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008524 182 SNSHLVKELKLRIKEVERAVGAATKDSDLSRRAFRRMNQMEATLDKASHVYPDCSAMATKLRAMTYNAEERVRLQKNQAT 261 (563)
Q Consensus 182 ~~~~~~~el~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~a~~~~~d~~~~~~kl~~~~~~~e~~~~~~~~~~~ 261 (563)
...++.+||.+-+.|. .-+|++.|++||+++.++|+ +||+.+|||+++++|||+|++++||+++++|+|++
T Consensus 87 ~~~~~~~~~~~~l~~~--~~~~~~~d~~lp~s~~~~~~-------~~~~~~~d~~~~~~kl~~~~~~~e~~~~~~~~~~~ 157 (533)
T PLN02870 87 DSERLVRDFYKILNEV--NTEEIPDGLKLPDSFSQLVS-------DMKNNHYDAKTFAFVLRAMMEKFERELRESKFAEL 157 (533)
T ss_pred chhhhHHHHHHHHHHh--ccccccccccCChhHHHHHH-------HHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3347899999988885 44899999999999988875 77789999999999999999999999999999999
Q ss_pred HHHHHhhcCCCcccchhhhhchHHHhccCCCCCCCCC---CCCCCCCCceeEEEEeCcchhhHHHHHHHHhhcCCCCceE
Q 008524 262 YLVQLASRTTPKGLHCLSMQLTAEYFALQPEERHLPN---QQDLHNPDLHHYAVFSDNVLACAVVVNSTVSFAKEPEKIV 338 (563)
Q Consensus 262 ~~~~la~~~~Pk~~hcL~~rLt~e~~~~~~~~~~~~~---~~~l~d~~~iHIv~~sDnvLaasVvI~Siv~Ns~~p~~i~ 338 (563)
|++||||+|+|||||||+||||+|||...+..++.|. .++|+||+++|+|++|||+||++|+|+|++.|+++|++++
T Consensus 158 ~~~~laa~t~PK~lHCL~mrLt~ey~~~~~~~~~~~~~e~~~~l~dp~~~Hy~ifSdNvLAasVvvnStv~~a~~p~~~V 237 (533)
T PLN02870 158 MNKHFAASSIPKGIHCLSLRLTDEYSSNAHARKQLPSPELLPVLSDNSYHHFVLSTDNILAASVVVSSTVQSSLKPEKIV 237 (533)
T ss_pred HHHHHHHhhcCCCccccchhhHHHHHhCchhhhcCCcccccccccCCcceeEEEEecceeEEEeeeehhhhcccCccceE
Confidence 9999999999999999999999999998866665554 4599999999999999999999999999999999999999
Q ss_pred EEEEeCCCCHHHHHHHHhhCCCCCceEEEEEccCCccchhhhhhhhhccCC-----------------------------
Q 008524 339 FHVVTDSLNLPAISMWFLLNPPGKATIQIQSIDNFNWLSTKYNATLKKENS----------------------------- 389 (563)
Q Consensus 339 FHIltd~is~~~mk~wf~~n~~~~a~Ie~i~i~~~~~l~~~~~~vl~~l~s----------------------------- 389 (563)
||||||.+++.+|++||.+|++++++|+|.++++|+|++.+|+|+++++++
T Consensus 238 FHvvTD~~n~~aM~~WF~~n~~~~a~v~V~~~e~f~wl~~~~~pvl~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (533)
T PLN02870 238 FHVITDKKTYAGMHSWFALNSVSPAIVEVKGVHQFDWLTRENVPVLEAVESHNGIRNYYHGNHIAGANLSETTPRTFASK 317 (533)
T ss_pred EEEecCccccHHHHHHHhhCCCccceEEEEehhhccccccccchHHHHHhhhHHHHHHhhcccccccccccccchhhhcc
Confidence 999999999999999999999999999999999999999999999977762
Q ss_pred ---CCCCCCchhhhhhhcccccccCCCeEEEEecceeeccChHHHhccCCCCCEEEEeecccchh--hHHHhhhhccCCC
Q 008524 390 ---HDPRYTSALNHLRFYLPDVFPALNKVLLFDHDVVVQSDLGRLWNIDMKGKVIGAVDTCKESE--ASFRRMDLFINFS 464 (563)
Q Consensus 390 ---~~~~~iS~~~y~RL~LPeLLP~ldKVLYLD~DVIVq~DLseLw~iDL~GkviaAV~Dc~~~~--~~~~r~~~~Lnfs 464 (563)
++|+|+|+++|+|||||++||+++||||||+||||++||++||++||+|+++|||+||.... ...++++.|+||+
T Consensus 318 l~~~~p~ylS~lny~Rl~LPelLP~LdKVLYLD~DVVVqgDLseLw~iDL~gkviaAVeDc~~~~~~~~~~~~~~YfNfs 397 (533)
T PLN02870 318 LQARSPKYISLLNHLRIYLPELFPNLDKVVFLDDDVVIQRDLSPLWDIDLGGKVNGAVETCRGEDEWVMSKRFRNYFNFS 397 (533)
T ss_pred cccCCccccCHHHHHHHHHHHHhhhcCeEEEEeCCEEecCcHHHHhhCCCCCceEEEEccccccchhhhhhhhhhhcccc
Confidence 36899999999999999999999999999999999999999999999999999999996522 1346788899999
Q ss_pred ChhhhhhCCCCCCceeehhhHccHHHHHhhcHHHHHHHHHHHccc-ccccCCChHHH---HHHhhccceecCcccccccc
Q 008524 465 DPLIAKKFDVKACTWAFGMNLFDLQEWRKRKLTAVYHKYLQLVCE-YLRFCLNLHFL---ALLIASLCYLLEQYILVYHN 540 (563)
Q Consensus 465 nP~i~~~f~~~~cYFNSGVlLiDLkkWRe~nitek~l~~l~~n~~-~ll~~dDQDiL---N~vf~g~v~~Ld~~rWN~~g 540 (563)
||.+..+|++++||||||||||||++||++++++++++|++++.. .+.++ |||+| |++|.|++++||+ +||+.|
T Consensus 398 ~p~i~~~fd~~~cyfNSGVlLINL~~WRe~nITek~~~~l~~n~~~~l~l~-DQdaLp~~livf~g~v~~LD~-rWN~~g 475 (533)
T PLN02870 398 HPLIAKNLDPEECAWAYGMNIFDLRAWRKTNIRETYHSWLKENLKSNLTMW-KLGTLPPALIAFKGHVHPIDP-SWHMLG 475 (533)
T ss_pred cchhhcccCcccceeeccchhccHHHHHHcChHHHHHHHHHhhhhcCceec-ccccccHhHHHhcCceEECCh-HHhcCC
Confidence 999999999999999999999999999999999999999998753 45667 69999 6999999999999 999988
Q ss_pred cccc
Q 008524 541 ILND 544 (563)
Q Consensus 541 l~~~ 544 (563)
+|.+
T Consensus 476 Lgy~ 479 (533)
T PLN02870 476 LGYQ 479 (533)
T ss_pred CCCc
Confidence 7743
No 7
>PLN02523 galacturonosyltransferase
Probab=100.00 E-value=1.4e-88 Score=730.96 Aligned_cols=376 Identities=36% Similarity=0.633 Sum_probs=338.5
Q ss_pred chHHHHHhhHHHHHHHHHHhhCCCC--CCchHHHHHHHHHHHHHHHhcccCC-----------------C--CcccHHHH
Q 008524 157 SDEKIKEMKDQVIRAQAYLNFAPPG--SNSHLVKELKLRIKEVERAVGAATK-----------------D--SDLSRRAF 215 (563)
Q Consensus 157 ~d~~~~~~~dq~~~a~ay~~~a~~~--~~~~~~~el~~~~~e~~~~~~~~~~-----------------~--~~~~~~~~ 215 (563)
-|.+.|+..|+..++.||++.|+.. .+++++|-+. ++.+.+++... | .+||+++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (559)
T PLN02523 80 LDQIRKQADDHRTLVNAYAAYARKLKLDNSKLLRLFA----DLSRNFTDLISKPSYRALLSSDGSAIDEDVLRQFEKEVK 155 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH----HHHhHHHHhhcCccccccccccCCcCchHHHhhcchhHH
Confidence 4899999999999999999999875 5555554322 44444443311 1 35899999
Q ss_pred HHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccchhhhhchHHHhccCCC--C
Q 008524 216 RRMNQMEATLDKASHVYPDCSAMATKLRAMTYNAEERVRLQKNQATYLVQLASRTTPKGLHCLSMQLTAEYFALQPE--E 293 (563)
Q Consensus 216 ~~~~~m~~~~~~a~~~~~d~~~~~~kl~~~~~~~e~~~~~~~~~~~~~~~la~~~~Pk~~hcL~~rLt~e~~~~~~~--~ 293 (563)
+++|.|+++|.+||+ .|||+.+++|||+|++++||+++++|+|++|++||||+|+|||||||+||||+|||.+.+. +
T Consensus 156 ~~~k~~~~~~~~a~~-~~d~~~~~~kl~~~~~~~e~~~~~~~~q~~~~~~laa~t~PK~lHCL~mrLt~ey~~~~~~~~~ 234 (559)
T PLN02523 156 ERVKVARQMIAESKE-SFDNQLKIQKLKDTIFAVNEQLTKAKKNGAFASLIAAKSIPKSLHCLAMRLMEERIAHPEKYKD 234 (559)
T ss_pred HHHHHHHHHHHHHHh-hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCccchhhHhHHHHHhChHhhhc
Confidence 999999999999997 9999999999999999999999999999999999999999999999999999999998755 3
Q ss_pred CCCCCCCCCCCCCceeEEEEeCcchhhHHHHHHHHhhcCCCCceEEEEEeCCCCHHHHHHHHhhCCCCCceEEEEEccCC
Q 008524 294 RHLPNQQDLHNPDLHHYAVFSDNVLACAVVVNSTVSFAKEPEKIVFHVVTDSLNLPAISMWFLLNPPGKATIQIQSIDNF 373 (563)
Q Consensus 294 ~~~~~~~~l~d~~~iHIv~~sDnvLaasVvI~Siv~Ns~~p~~i~FHIltd~is~~~mk~wf~~n~~~~a~Ie~i~i~~~ 373 (563)
.+++++++|+||+++|||+++||++|++|+|+|++.|+++|++++||||||++++.+|+.||..+++.+++|+|++|++|
T Consensus 235 ~~~~~~~~l~dp~l~Hy~ifSdNvlAAsVvInStv~Ns~~p~~~VFHIVTD~ln~~amk~Wf~~n~~~~a~I~V~~Iedf 314 (559)
T PLN02523 235 EGKPPPPELEDPSLYHYAIFSDNVIAASVVVNSAVKNAKEPWKHVFHVVTDRMNLAAMKVMFKMRDLNGAHVEVKAVEDY 314 (559)
T ss_pred cCCCcchhccCCCcceEEEecCcchhhhhhHHHHHHccCCCcceEEEEEeCCCCHHHHHHHHhhCCCCCcEEEEEEeehh
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhhhhhhccCC------------------------CCCCCCchhhhhhhcccccccCCCeEEEEecceeeccChH
Q 008524 374 NWLSTKYNATLKKENS------------------------HDPRYTSALNHLRFYLPDVFPALNKVLLFDHDVVVQSDLG 429 (563)
Q Consensus 374 ~~l~~~~~~vl~~l~s------------------------~~~~~iS~~~y~RL~LPeLLP~ldKVLYLD~DVIVq~DLs 429 (563)
+|+++.|.|+++++++ ++++|+|+++|+|||||++||+++||||||+||||++||+
T Consensus 315 ~~ln~~~~pvlk~l~s~~~~~~~f~~~~~~~~~~~~~~k~~~p~ylS~~ny~Rf~IPeLLP~ldKVLYLD~DVVVq~DLs 394 (559)
T PLN02523 315 KFLNSSYVPVLRQLESANLQKFYFENKLENATKDSSNMKFRNPKYLSMLNHLRFYLPEMYPKLHRILFLDDDVVVQKDLT 394 (559)
T ss_pred hhcccccchHHHhhhhhhhhhhhccccccccccccccccccCcchhhHHHHHHHHHHHHhcccCeEEEEeCCEEecCCHH
Confidence 9999899888765544 3468999999999999999999999999999999999999
Q ss_pred HHhccCCCCCEEEEeecccchhhHHHhhhhccCCCChhhhhhCCCCCCceeehhhHccHHHHHhhcHHHHHHHHHHHccc
Q 008524 430 RLWNIDMKGKVIGAVDTCKESEASFRRMDLFINFSDPLIAKKFDVKACTWAFGMNLFDLQEWRKRKLTAVYHKYLQLVCE 509 (563)
Q Consensus 430 eLw~iDL~GkviaAV~Dc~~~~~~~~r~~~~LnfsnP~i~~~f~~~~cYFNSGVlLiDLkkWRe~nitek~l~~l~~n~~ 509 (563)
+||++||+|+++|||+||.. .++++..+++|++|.++++||+++||||+|||||||++||++++|++++.|.+.+.+
T Consensus 395 eLw~iDL~gkv~aAVeDc~~---~~~r~~~~ln~s~p~i~~yFNs~aC~wnsGVmlINL~~WRe~nITek~~~w~~ln~~ 471 (559)
T PLN02523 395 GLWKIDMDGKVNGAVETCFG---SFHRYAQYLNFSHPLIKEKFNPKACAWAYGMNIFDLDAWRREKCTEQYHYWQNLNEN 471 (559)
T ss_pred HHHhCcCCCceEEEehhhhh---HHHHHHHhhcccchhhhhCcCCCcccccCCcEEEeHHHHHHhchHHHHHHHHHhccc
Confidence 99999999999999999976 568888999999999988999999999999999999999999999999988887765
Q ss_pred ccccCCChHHH---HHHhhccceecCccccccccccc
Q 008524 510 YLRFCLNLHFL---ALLIASLCYLLEQYILVYHNILN 543 (563)
Q Consensus 510 ~ll~~dDQDiL---N~vf~g~v~~Ld~~rWN~~gl~~ 543 (563)
. .++ |||+| |++|.|+|++||+ +||+.|+|.
T Consensus 472 ~-~l~-DqdaLpp~LivF~gri~~LD~-rWNvlglGy 505 (559)
T PLN02523 472 R-TLW-KLGTLPPGLITFYSTTKPLDK-SWHVLGLGY 505 (559)
T ss_pred c-ccc-cccccchHHHHhcCceEecCc-hhhccCCcc
Confidence 4 445 58877 5999999999999 999998774
No 8
>PLN02867 Probable galacturonosyltransferase
Probab=100.00 E-value=1.3e-88 Score=731.56 Aligned_cols=350 Identities=32% Similarity=0.575 Sum_probs=321.5
Q ss_pred HHHHHHHHhcccCCCCcccHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 008524 193 RIKEVERAVGAATKDSDLSRRAFRRMNQMEATLDKASHVYPDCSAMATKLRAMTYNAEERVRLQKNQATYLVQLASRTTP 272 (563)
Q Consensus 193 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~a~~~~~d~~~~~~kl~~~~~~~e~~~~~~~~~~~~~~~la~~~~P 272 (563)
-.+|++|+++|++.|+++|.++.++.+.|++++.++++.++||++|+.|||||++++||+++++|+|++|++||||+|+|
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~kl~am~~~~e~~~~~~~~~~~~~~~laa~t~P 173 (535)
T PLN02867 94 LREELTRALVEAKEQDDGGRGTKGSTESFNDLVKEMTSNRQDIKAFAFRTKAMLLKMERKVQSARQRESIYWHLASHGIP 173 (535)
T ss_pred HHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhhhchHHHhccCCCCCCCC---CCCCCCCCCceeEEEEeCcchhhHHHHHHHHhhcCCCCceEEEEEeCCCCHH
Q 008524 273 KGLHCLSMQLTAEYFALQPEERHLP---NQQDLHNPDLHHYAVFSDNVLACAVVVNSTVSFAKEPEKIVFHVVTDSLNLP 349 (563)
Q Consensus 273 k~~hcL~~rLt~e~~~~~~~~~~~~---~~~~l~d~~~iHIv~~sDnvLaasVvI~Siv~Ns~~p~~i~FHIltd~is~~ 349 (563)
||||||+||||+|||.+.+..++.| ..++|+||+++|+|++|||+||++|+|+|++.|+++|++++||||||.+++.
T Consensus 174 K~lHCL~mrLt~ey~~~~~~~~~~~~~~~~~~l~d~~~~Hy~ifSdNvLAasVvvnStv~~a~~p~~~VfHvvTD~~ny~ 253 (535)
T PLN02867 174 KSLHCLCLKLAEEYAVNAMARSRLPPPESVSRLTDPSFHHVVLLTDNVLAASVVISSTVQNAANPEKLVFHIVTDKKTYT 253 (535)
T ss_pred CCccccchhhHHHHHhCchhhccCCChhhhhhccCCCcceEEEEecceeEEEeeeehhhhcccCccceEEEEecCccccH
Confidence 9999999999999999986666555 4458999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCCceEEEEEccCCccchhhhhhhhhccCC-----------------------------CCCCCCchhhh
Q 008524 350 AISMWFLLNPPGKATIQIQSIDNFNWLSTKYNATLKKENS-----------------------------HDPRYTSALNH 400 (563)
Q Consensus 350 ~mk~wf~~n~~~~a~Ie~i~i~~~~~l~~~~~~vl~~l~s-----------------------------~~~~~iS~~~y 400 (563)
+|++||.+|++++++|||.++++|+|++.++.|+++++++ ++|+|+|+++|
T Consensus 254 aM~~WF~~n~~~~a~v~V~~~~~f~wl~~~~~~v~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pkylS~lnY 333 (535)
T PLN02867 254 PMHAWFAINSIKSAVVEVKGLHQYDWSQEVNVGVKEMLEIHRLIWSHYYQNLKESDFQFEGTHKRSLEALSPSCLSLLNH 333 (535)
T ss_pred HHHHHHhhCCCccceEEEEeehhccccccccccHHHHHHHhhhhhhhhhccccccccccccccccchhhcChhhhhHHHH
Confidence 9999999999999999999999999999999887655532 67899999999
Q ss_pred hhhcccccccCCCeEEEEecceeeccChHHHhccCCCCCEEEEeecccc--hhhHHHhhhhccCCCChhhhhhCCCCCCc
Q 008524 401 LRFYLPDVFPALNKVLLFDHDVVVQSDLGRLWNIDMKGKVIGAVDTCKE--SEASFRRMDLFINFSDPLIAKKFDVKACT 478 (563)
Q Consensus 401 ~RL~LPeLLP~ldKVLYLD~DVIVq~DLseLw~iDL~GkviaAV~Dc~~--~~~~~~r~~~~LnfsnP~i~~~f~~~~cY 478 (563)
+||+||++||+++||||||+||||++||++||++||+|+++|||.|+.. .....+++..|+||++|.+..+|+++.||
T Consensus 334 lRflIPeLLP~LdKVLYLD~DVVVqgDLseLwdiDL~gkviaAV~D~~c~~~~~~~~~~~~YlNfsnp~i~~~~~p~~cY 413 (535)
T PLN02867 334 LRIYIPELFPDLNKIVFLDDDVVVQHDLSSLWELDLNGKVVGAVVDSWCGDNCCPGRKYKDYLNFSHPLISSNLDQERCA 413 (535)
T ss_pred HHHHHHHHhhccCeEEEecCCEEEcCchHHHHhCcCCCCeEEEEeccccccccccchhhhhhccccchhhhccCCCCCcc
Confidence 9999999999999999999999999999999999999999999987432 11123567889999999988889999999
Q ss_pred eeehhhHccHHHHHhhcHHHHHHHHHHHcccc-cccCCChHHHHH---HhhccceecCcccccccccccc
Q 008524 479 WAFGMNLFDLQEWRKRKLTAVYHKYLQLVCEY-LRFCLNLHFLAL---LIASLCYLLEQYILVYHNILND 544 (563)
Q Consensus 479 FNSGVlLiDLkkWRe~nitek~l~~l~~n~~~-ll~~dDQDiLN~---vf~g~v~~Ld~~rWN~~gl~~~ 544 (563)
||||||||||++||++++++++++|++++.+. ..+. |||+||. +|.|+|++||+ +||+.|+|..
T Consensus 414 FNSGVmLINL~~WRe~nITek~~~~Le~n~~~~~~l~-dqd~LN~~LlvF~g~v~~LD~-rWNv~gLgy~ 481 (535)
T PLN02867 414 WLYGMNVFDLKAWRRTNITEAYHKWLKLSLNSGLQLW-QPGALPPALLAFKGHVHPIDP-SWHVAGLGSR 481 (535)
T ss_pred eecceeeeeHHHHHHhcHHHHHHHHHHhchhcccccc-cccccchHHHHhcCcEEECCh-hhcccCCCcc
Confidence 99999999999999999999999999998643 4455 6999995 99999999999 9999877643
No 9
>PLN02659 Probable galacturonosyltransferase
Probab=100.00 E-value=1.1e-87 Score=722.18 Aligned_cols=352 Identities=33% Similarity=0.608 Sum_probs=320.2
Q ss_pred CCchHHHHHHHHHHH-HHHHhcccCCCCcccHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008524 182 SNSHLVKELKLRIKE-VERAVGAATKDSDLSRRAFRRMNQMEATLDKASHVYPDCSAMATKLRAMTYNAEERVRLQKNQA 260 (563)
Q Consensus 182 ~~~~~~~el~~~~~e-~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~a~~~~~d~~~~~~kl~~~~~~~e~~~~~~~~~~ 260 (563)
...++.+||.+.+.| ... .|+..|.++|+++.+++. ++++.+|||++|++|||||++++||+++++|+|+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~--~e~~~~~~~~~~~~~~~~-------~~~~~~~d~~~~~~klr~~l~~~E~~~~~~k~~~ 157 (534)
T PLN02659 87 DSANVPEVMYQVLEQPLSN--DELKGRSDIPQTLEEFMD-------EVKNSRSDARAFALKLREMVTLLEQRTRTAKIQE 157 (534)
T ss_pred cccccHHHHHHHHHhhhcc--cccCCccccchHHHHHHH-------HHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445788999988877 433 478889999999977775 5556899999999999999999999999999999
Q ss_pred HHHHHHhhcCCCcccchhhhhchHHHhccCCCCCCCCC---CCCCCCCCceeEEEEeCcchhhHHHHHHHHhhcCCCCce
Q 008524 261 TYLVQLASRTTPKGLHCLSMQLTAEYFALQPEERHLPN---QQDLHNPDLHHYAVFSDNVLACAVVVNSTVSFAKEPEKI 337 (563)
Q Consensus 261 ~~~~~la~~~~Pk~~hcL~~rLt~e~~~~~~~~~~~~~---~~~l~d~~~iHIv~~sDnvLaasVvI~Siv~Ns~~p~~i 337 (563)
.++.||||+|+|||||||+||||+|||.+.+..++.|+ .++|+||+++|+|++|||+||++|||+|++.|+++|+++
T Consensus 158 ~~~~~laa~t~PK~lHCL~mrLt~ey~~~~~~~~~~~~~~~~~~l~d~~l~Hy~ifSdNvLAasVVvnStv~~a~~p~~~ 237 (534)
T PLN02659 158 YLYRHVASSSIPKQLHCLALRLANEHSTNAAARLQLPLAELVPALVDNSYFHFVLASDNILAASVVANSLVQNALRPHKF 237 (534)
T ss_pred HHHHHHHhhhCCCCccccchhhHHHHHhCchhhhccCCcccccccCCCCcceEEEEecceeEEEeeeehhhhcccCccce
Confidence 99999999999999999999999999999877666554 458999999999999999999999999999999999999
Q ss_pred EEEEEeCCCCHHHHHHHHhhCCCCCceEEEEEccCCccchhhhhhhhhccCC----------------------------
Q 008524 338 VFHVVTDSLNLPAISMWFLLNPPGKATIQIQSIDNFNWLSTKYNATLKKENS---------------------------- 389 (563)
Q Consensus 338 ~FHIltd~is~~~mk~wf~~n~~~~a~Ie~i~i~~~~~l~~~~~~vl~~l~s---------------------------- 389 (563)
+||||||++++.+|++||.+|++++++|+|.++++|+|++.+|+||++++++
T Consensus 238 VFHivTD~~ny~aM~~WF~~n~~~~a~v~V~~~e~f~wl~~~~~pvl~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (534)
T PLN02659 238 VLHIITDRKTYSPMQAWFSLHPLSPAIIEVKALHHFDWFAKGKVPVLEAMEKDQRVRSQFRGGSSAIVANNTEKPHVIAA 317 (534)
T ss_pred EEEEecCccccHHHHHHHhhCCCccceEEEEeehhcccccccccHHHHHHhhhhhhhhhhcccccccccccccCcccccc
Confidence 9999999999999999999999999999999999999999999999998762
Q ss_pred ----CCCCCCchhhhhhhcccccccCCCeEEEEecceeeccChHHHhccCCCCCEEEEeecccchh--hHHHhhhhccCC
Q 008524 390 ----HDPRYTSALNHLRFYLPDVFPALNKVLLFDHDVVVQSDLGRLWNIDMKGKVIGAVDTCKESE--ASFRRMDLFINF 463 (563)
Q Consensus 390 ----~~~~~iS~~~y~RL~LPeLLP~ldKVLYLD~DVIVq~DLseLw~iDL~GkviaAV~Dc~~~~--~~~~r~~~~Lnf 463 (563)
++|+|+|+++|+|||||++||+++||||||+||||++||++||++||+|+++|||+||...+ ...++++.+++|
T Consensus 318 ~l~~~~p~ylS~~nY~RL~IPeLLP~LdKVLYLD~DVVVqgDLseLw~iDL~gkv~AAVeDc~~~d~~~~~~~~~~yL~~ 397 (534)
T PLN02659 318 KLQALSPKYNSVMNHIRIHLPELFPSLNKVVFLDDDIVVQTDLSPLWDIDMNGKVNGAVETCRGEDKFVMSKKLKSYLNF 397 (534)
T ss_pred ccccCCccceeHHHHHHHHHHHHhhhcCeEEEeeCCEEEcCchHHHHhCCCCCcEEEEeeccccccchhhhHHHHHhhcc
Confidence 47899999999999999999999999999999999999999999999999999999996421 123678889999
Q ss_pred CChhhhhhCCCCCCceeehhhHccHHHHHhhcHHHHHHHHHHHccc-ccccCCChHHH---HHHhhccceecCccccccc
Q 008524 464 SDPLIAKKFDVKACTWAFGMNLFDLQEWRKRKLTAVYHKYLQLVCE-YLRFCLNLHFL---ALLIASLCYLLEQYILVYH 539 (563)
Q Consensus 464 snP~i~~~f~~~~cYFNSGVlLiDLkkWRe~nitek~l~~l~~n~~-~ll~~dDQDiL---N~vf~g~v~~Ld~~rWN~~ 539 (563)
++|.+..+|+++.||||+|||||||++||++++++++++|++++.+ .+.++ |||+| |++|.|+|++||+ +||+.
T Consensus 398 s~p~i~~yFn~~~cYfNsGVlLINLk~WRe~nITek~l~~l~~n~~~~l~l~-DQdaLp~~LivF~g~v~~LD~-rWN~~ 475 (534)
T PLN02659 398 SHPLIAKNFDPNECAWAYGMNIFDLEAWRKTNISSTYHHWLEENLKSDLSLW-QLGTLPPGLIAFHGHVHVIDP-FWHML 475 (534)
T ss_pred cchhhhhccCccccceecceeEeeHHHHHhcChHHHHHHHHHhccccccccc-ccccchHHHHHhcCCEEECCh-hheec
Confidence 9999988999999999999999999999999999999999998853 45666 69999 6999999999999 99998
Q ss_pred ccccc
Q 008524 540 NILND 544 (563)
Q Consensus 540 gl~~~ 544 (563)
+++.+
T Consensus 476 gLg~~ 480 (534)
T PLN02659 476 GLGYQ 480 (534)
T ss_pred CCccc
Confidence 87743
No 10
>cd06429 GT8_like_1 GT8_like_1 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=100.00 E-value=2.3e-45 Score=371.15 Aligned_cols=205 Identities=40% Similarity=0.671 Sum_probs=179.1
Q ss_pred eeEEEEeCcchhhHHHHHHHHhhcCCCCceEEEEEeCCCCHHHHHHHHhhCCCCCceEEEEEccCCccchhhhhhhhhcc
Q 008524 308 HHYAVFSDNVLACAVVVNSTVSFAKEPEKIVFHVVTDSLNLPAISMWFLLNPPGKATIQIQSIDNFNWLSTKYNATLKKE 387 (563)
Q Consensus 308 iHIv~~sDnvLaasVvI~Siv~Ns~~p~~i~FHIltd~is~~~mk~wf~~n~~~~a~Ie~i~i~~~~~l~~~~~~vl~~l 387 (563)
+|||+++||+++++|++.|++.|+++|.+++|||+||+++.+.|++|+..++.++++|+|++++++.+......+.++++
T Consensus 1 ~hiv~~~Dn~l~~~v~i~S~l~nn~~~~~~~fhvvtd~~s~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~ 80 (257)
T cd06429 1 IHVVIFSDNRLAAAVVINSSISNNKDPSNLVFHIVTDNQNYGAMRSWFDLNPLKIATVKVLNFDDFKLLGKVKVDSLMQL 80 (257)
T ss_pred CCEEEEecchhHHHHHHHHHHHhCCCCCceEEEEecCccCHHHHHHHHHhcCCCCceEEEEEeCcHHhhcccccchhhhh
Confidence 69999999989999999999999999899999999999999999999999888899999999987655332221222222
Q ss_pred CC---------CCCCCCchhhhhhhcccccccCCCeEEEEecceeeccChHHHhccCCCCCEEEEeecccchhhHHHhhh
Q 008524 388 NS---------HDPRYTSALNHLRFYLPDVFPALNKVLLFDHDVVVQSDLGRLWNIDMKGKVIGAVDTCKESEASFRRMD 458 (563)
Q Consensus 388 ~s---------~~~~~iS~~~y~RL~LPeLLP~ldKVLYLD~DVIVq~DLseLw~iDL~GkviaAV~Dc~~~~~~~~r~~ 458 (563)
.+ .+++++|.++|+||+||++||+++||||||||+||++||++||++||+|+++|||+|
T Consensus 81 ~~~~~~~~~~~~~~~~~s~~~y~Rl~ip~llp~~~kvlYLD~Dviv~~dl~eL~~~dl~~~~~aav~d------------ 148 (257)
T cd06429 81 ESEADTSNLKQRKPEYISLLNFARFYLPELFPKLEKVIYLDDDVVVQKDLTELWNTDLGGGVAGAVET------------ 148 (257)
T ss_pred hccccccccccCCccccCHHHHHHHHHHHHhhhhCeEEEEeCCEEEeCCHHHHhhCCCCCCEEEEEhh------------
Confidence 21 467899999999999999999999999999999999999999999999999999987
Q ss_pred hccCCCChhhhhhCCCCCCceeehhhHccHHHHHhhcHHHHHHHHHHHccccc-ccCC--ChHHHHHHhhccceecCccc
Q 008524 459 LFINFSDPLIAKKFDVKACTWAFGMNLFDLQEWRKRKLTAVYHKYLQLVCEYL-RFCL--NLHFLALLIASLCYLLEQYI 535 (563)
Q Consensus 459 ~~LnfsnP~i~~~f~~~~cYFNSGVlLiDLkkWRe~nitek~l~~l~~n~~~l-l~~d--DQDiLN~vf~g~v~~Ld~~r 535 (563)
|||||||||||++||++++++++++|++.+.++. .+.+ |||+||.+|.|+|+.||+ +
T Consensus 149 -------------------yfNsGV~linl~~wr~~~i~~~~~~~~~~~~~~~~~~~~~~dqd~ln~~~~~~~~~L~~-~ 208 (257)
T cd06429 149 -------------------SWNPGVNVVNLTEWRRQNVTETYEKWMELNQEEEVTLWKLITLPPGLIVFYGLTSPLDP-S 208 (257)
T ss_pred -------------------hcccceEEEeHHHHHhccHHHHHHHHHHHhhhcccchhhcCCccHHHHHccCeeEECCh-H
Confidence 5899999999999999999999999999886542 2222 799999999999999999 9
Q ss_pred ccccccccc
Q 008524 536 LVYHNILND 544 (563)
Q Consensus 536 WN~~gl~~~ 544 (563)
||+++++.+
T Consensus 209 wN~~~l~~~ 217 (257)
T cd06429 209 WHVRGLGYN 217 (257)
T ss_pred HcccCCccc
Confidence 999876643
No 11
>PRK15171 lipopolysaccharide 1,3-galactosyltransferase; Provisional
Probab=100.00 E-value=8.4e-39 Score=334.13 Aligned_cols=212 Identities=19% Similarity=0.264 Sum_probs=166.2
Q ss_pred CCceeEEEEeCcc--hhhHHHHHHHHhhcCCCCceEEEEEeCCCCHHHHHHHHhhCCCCCceEEEEEccCCccchhhhhh
Q 008524 305 PDLHHYAVFSDNV--LACAVVVNSTVSFAKEPEKIVFHVVTDSLNLPAISMWFLLNPPGKATIQIQSIDNFNWLSTKYNA 382 (563)
Q Consensus 305 ~~~iHIv~~sDnv--LaasVvI~Siv~Ns~~p~~i~FHIltd~is~~~mk~wf~~n~~~~a~Ie~i~i~~~~~l~~~~~~ 382 (563)
++.+|||+++|+. .+++|+|+|++.|+++ ..++|||++++++.+..+.+-.+....+..|+++.++. .++
T Consensus 23 ~~~i~Iv~~~D~ny~~~~~vsi~Sil~nn~~-~~~~f~Il~~~is~e~~~~l~~l~~~~~~~i~~~~id~-~~~------ 94 (334)
T PRK15171 23 KNSLDIAYGIDKNFLFGCGVSIASVLLNNPD-KSLVFHVFTDYISDADKQRFSALAKQYNTRINIYLINC-ERL------ 94 (334)
T ss_pred CCceeEEEECcHhhHHHHHHHHHHHHHhCCC-CCEEEEEEeCCCCHHHHHHHHHHHHhcCCeEEEEEeCH-HHH------
Confidence 4689999999984 3799999999999765 47999999999998887776555444456788877753 111
Q ss_pred hhhccCCCCCCCCchhhhhhhcccccccC-CCeEEEEecceeeccChHHHhccCCCCCEEEEe-ecccchhhHHHhhhhc
Q 008524 383 TLKKENSHDPRYTSALNHLRFYLPDVFPA-LNKVLLFDHDVVVQSDLGRLWNIDMKGKVIGAV-DTCKESEASFRRMDLF 460 (563)
Q Consensus 383 vl~~l~s~~~~~iS~~~y~RL~LPeLLP~-ldKVLYLD~DVIVq~DLseLw~iDL~GkviaAV-~Dc~~~~~~~~r~~~~ 460 (563)
+.+. ...++|.++|+||+||++||+ ++||||||+|+||++||++||++||+|+.+||| .|+... .+......
T Consensus 95 --~~~~--~~~~~s~atY~Rl~ip~llp~~~dkvLYLD~Diiv~~dl~~L~~~dl~~~~~aav~~d~~~~--~~~~~~~~ 168 (334)
T PRK15171 95 --KSLP--STKNWTYATYFRFIIADYFIDKTDKVLYLDADIACKGSIKELIDLDFAENEIAAVVAEGDAE--WWSKRAQS 168 (334)
T ss_pred --hCCc--ccCcCCHHHHHHHHHHHhhhhhcCEEEEeeCCEEecCCHHHHHhccCCCCeEEEEEeccchh--HHHHHHHh
Confidence 1111 245899999999999999995 999999999999999999999999997766666 454321 11111222
Q ss_pred cCCCChhhhhhCCCCCCceeehhhHccHHHHHhhcHHHHHHHHHHHc--ccccccCCChHHHHHHhhccceecCcccccc
Q 008524 461 INFSDPLIAKKFDVKACTWAFGMNLFDLQEWRKRKLTAVYHKYLQLV--CEYLRFCLNLHFLALLIASLCYLLEQYILVY 538 (563)
Q Consensus 461 LnfsnP~i~~~f~~~~cYFNSGVlLiDLkkWRe~nitek~l~~l~~n--~~~ll~~dDQDiLN~vf~g~v~~Ld~~rWN~ 538 (563)
++. | .+ ..+|||||||||||++||++++++++++++..+ ..++.++ |||+||++|.|+|++||+ +||+
T Consensus 169 l~~--~----~~--~~~YFNsGVlliNl~~wRe~~i~~k~~~~l~~~~~~~~~~~~-DQDiLN~~~~~~~~~L~~-~wN~ 238 (334)
T PRK15171 169 LQT--P----GL--ASGYFNSGFLLINIPAWAQENISAKAIEMLADPEIVSRITHL-DQDVLNILLAGKVKFIDA-KYNT 238 (334)
T ss_pred cCC--c----cc--cccceecceEEEcHHHHHHhhHHHHHHHHHhccccccceeec-ChhHHHHHHcCCeEECCH-hhCC
Confidence 221 1 01 246999999999999999999999999999875 3567788 799999999999999999 9998
Q ss_pred cc
Q 008524 539 HN 540 (563)
Q Consensus 539 ~g 540 (563)
+.
T Consensus 239 ~~ 240 (334)
T PRK15171 239 QF 240 (334)
T ss_pred cc
Confidence 74
No 12
>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis. Members of this family are involved in lipopolysaccharide biosynthesis and glycogen synthesis. GT-8 comprises enzymes with a number of known activities: lipopolysaccharide galactosyltransferase, lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase, and N-acetylglucosaminyltransferase. GT-8 enzymes contains a conserved DXD motif which is essential in the coordination of a catalytic divalent cation, most commonly Mn2+.
Probab=100.00 E-value=7.8e-37 Score=304.48 Aligned_cols=211 Identities=16% Similarity=0.185 Sum_probs=168.5
Q ss_pred eeEEEEeCc--ch-hhHHHHHHHHhhcCCCCceEEEEEeCCCCHHHHHHHHhhCCCCCceEEEEEccCCccchhhhhhhh
Q 008524 308 HHYAVFSDN--VL-ACAVVVNSTVSFAKEPEKIVFHVVTDSLNLPAISMWFLLNPPGKATIQIQSIDNFNWLSTKYNATL 384 (563)
Q Consensus 308 iHIv~~sDn--vL-aasVvI~Siv~Ns~~p~~i~FHIltd~is~~~mk~wf~~n~~~~a~Ie~i~i~~~~~l~~~~~~vl 384 (563)
|||++++++ ++ +++|+|+|+++|++. .++|||++++++.+..+.+..+....+..++|++++...+.. +
T Consensus 1 ~~i~~~a~d~~y~~~~~v~i~Sl~~~~~~--~~~~~il~~~is~~~~~~L~~~~~~~~~~i~~~~~~~~~~~~--~---- 72 (246)
T cd00505 1 IAIVIVATGDEYLRGAIVLMKSVLRHRTK--PLRFHVLTNPLSDTFKAALDNLRKLYNFNYELIPVDILDSVD--S---- 72 (246)
T ss_pred CeEEEEecCcchhHHHHHHHHHHHHhCCC--CeEEEEEEccccHHHHHHHHHHHhccCceEEEEeccccCcch--h----
Confidence 688886644 33 799999999999875 699999999999888777765555557889999886422111 0
Q ss_pred hccCCCCCCCCchhhhhhhcccccccCCCeEEEEecceeeccChHHHhccCCCCCEEEEeecccchhhHHHhhhhccCCC
Q 008524 385 KKENSHDPRYTSALNHLRFYLPDVFPALNKVLLFDHDVVVQSDLGRLWNIDMKGKVIGAVDTCKESEASFRRMDLFINFS 464 (563)
Q Consensus 385 ~~l~s~~~~~iS~~~y~RL~LPeLLP~ldKVLYLD~DVIVq~DLseLw~iDL~GkviaAV~Dc~~~~~~~~r~~~~Lnfs 464 (563)
. ...++++..+|+||++|++||+++||||||+|+||++||++||++|++|+++|||+||.... ....++..+
T Consensus 73 ---~-~~~~~~~~~~y~RL~i~~llp~~~kvlYLD~D~iv~~di~~L~~~~l~~~~~aav~d~~~~~-~~~~~~~~~--- 144 (246)
T cd00505 73 ---E-HLKRPIKIVTLTKLHLPNLVPDYDKILYVDADILVLTDIDELWDTPLGGQELAAAPDPGDRR-EGKYYRQKR--- 144 (246)
T ss_pred ---h-hhcCccccceeHHHHHHHHhhccCeEEEEcCCeeeccCHHHHhhccCCCCeEEEccCchhhh-ccchhhccc---
Confidence 0 11367899999999999999999999999999999999999999999999999999987421 001111111
Q ss_pred ChhhhhhCCCCCCceeehhhHccHHHHHhhcHHHHHHHHHHHcccccccCCChHHHHHHhhcc---ceecCccccccccc
Q 008524 465 DPLIAKKFDVKACTWAFGMNLFDLQEWRKRKLTAVYHKYLQLVCEYLRFCLNLHFLALLIASL---CYLLEQYILVYHNI 541 (563)
Q Consensus 465 nP~i~~~f~~~~cYFNSGVlLiDLkkWRe~nitek~l~~l~~n~~~ll~~dDQDiLN~vf~g~---v~~Ld~~rWN~~gl 541 (563)
......+|||||||||||++||++++.++++++..++..++.++ |||+||.+|.++ +..||+ +||++..
T Consensus 145 ------~~~~~~~yfNsGVmlinl~~~r~~~~~~~~~~~~~~~~~~~~~~-DQd~LN~~~~~~~~~i~~L~~-~wN~~~~ 216 (246)
T cd00505 145 ------SHLAGPDYFNSGVFVVNLSKERRNQLLKVALEKWLQSLSSLSGG-DQDLLNTFFKQVPFIVKSLPC-IWNVRLT 216 (246)
T ss_pred ------CCCCCCCceeeeeEEEechHHHHHHHHHHHHHHHHhhcccCccC-CcHHHHHHHhcCCCeEEECCC-eeeEEec
Confidence 12235789999999999999999999999888877776677788 799999999999 999999 9999855
Q ss_pred c
Q 008524 542 L 542 (563)
Q Consensus 542 ~ 542 (563)
+
T Consensus 217 ~ 217 (246)
T cd00505 217 G 217 (246)
T ss_pred C
Confidence 4
No 13
>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The members of this family of glycosyltransferases catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The enzymes exhibit broad substrate specificities. The known functions found in this family include: Alpha-1,4-galactosyltransferase, LOS-alpha-1,3-D-galactosyltransferase, UDP-glucose:(galactosyl) LPS alpha1,2-glucosyltransferase, UDP-galactose: (glucosyl) LPS alpha1,2-galactosyltransferase, and UDP-glucose:(glucosyl) LPS alpha1,2-glucosyltransferase. Alpha-1,4-galactosyltransferase from N. meningitidis adds an alpha-galactose from UDP-Gal (the donor) to a terminal lactose (the acceptor) of the LOS structure of outer membrane. LOSs are virulence factors that enable the organism to evade the immune sys
Probab=100.00 E-value=3.4e-36 Score=298.95 Aligned_cols=211 Identities=18% Similarity=0.229 Sum_probs=172.6
Q ss_pred eeEEEEeCcc-h-hhHHHHHHHHhhcCCCCceEEEEEeCCCCHHHHHHHHhhCCCCCceEEEEEccCCccchhhhhhhhh
Q 008524 308 HHYAVFSDNV-L-ACAVVVNSTVSFAKEPEKIVFHVVTDSLNLPAISMWFLLNPPGKATIQIQSIDNFNWLSTKYNATLK 385 (563)
Q Consensus 308 iHIv~~sDnv-L-aasVvI~Siv~Ns~~p~~i~FHIltd~is~~~mk~wf~~n~~~~a~Ie~i~i~~~~~l~~~~~~vl~ 385 (563)
||||+++|+. + +++|++.|+++|++. +.++|||++++++.+.++.+.......+..|+++.++.- .+ .
T Consensus 1 ~~I~~~~d~~y~~~~~~~l~Sl~~~~~~-~~~~~~il~~~is~~~~~~L~~~~~~~~~~i~~~~i~~~-----~~----~ 70 (248)
T cd04194 1 MNIVFAIDDNYAPYLAVTIKSILANNSK-RDYDFYILNDDISEENKKKLKELLKKYNSSIEFIKIDND-----DF----K 70 (248)
T ss_pred CCEEEEecHhhHHHHHHHHHHHHhcCCC-CceEEEEEeCCCCHHHHHHHHHHHHhcCCeEEEEEcCHH-----HH----h
Confidence 6999999984 3 799999999999985 569999999999987776655443335778899887631 11 1
Q ss_pred ccCCCCCCCCchhhhhhhcccccccCCCeEEEEecceeeccChHHHhccCCCCCEEEEeecccchhhHHHhhhhccCCCC
Q 008524 386 KENSHDPRYTSALNHLRFYLPDVFPALNKVLLFDHDVVVQSDLGRLWNIDMKGKVIGAVDTCKESEASFRRMDLFINFSD 465 (563)
Q Consensus 386 ~l~s~~~~~iS~~~y~RL~LPeLLP~ldKVLYLD~DVIVq~DLseLw~iDL~GkviaAV~Dc~~~~~~~~r~~~~Lnfsn 465 (563)
... ....+++..+|+||++|+++|+++||||||+|+||++||++||++|++|+++|||+||... ...... .
T Consensus 71 ~~~-~~~~~~~~~~y~rl~l~~ll~~~~rvlylD~D~lv~~di~~L~~~~~~~~~~aa~~d~~~~---~~~~~~-~---- 141 (248)
T cd04194 71 FFP-ATTDHISYATYYRLLIPDLLPDYDKVLYLDADIIVLGDLSELFDIDLGDNLLAAVRDPFIE---QEKKRK-R---- 141 (248)
T ss_pred cCC-cccccccHHHHHHHHHHHHhcccCEEEEEeCCEEecCCHHHHhcCCcCCCEEEEEecccHH---HHHHHH-h----
Confidence 111 1346789999999999999999999999999999999999999999999999999999862 111111 0
Q ss_pred hhhhhhCCCCCCceeehhhHccHHHHHhhcHHHHHHHHHHHcccccccCCChHHHHHHhhccceecCcccccccccc
Q 008524 466 PLIAKKFDVKACTWAFGMNLFDLQEWRKRKLTAVYHKYLQLVCEYLRFCLNLHFLALLIASLCYLLEQYILVYHNIL 542 (563)
Q Consensus 466 P~i~~~f~~~~cYFNSGVlLiDLkkWRe~nitek~l~~l~~n~~~ll~~dDQDiLN~vf~g~v~~Ld~~rWN~~gl~ 542 (563)
........+||||||||+|+++||+.++++++++++..+.....++ |||+||.+|.|+|..||+ +||++...
T Consensus 142 ---~~~~~~~~~yfNsGv~l~nl~~~r~~~~~~~~~~~~~~~~~~~~~~-DQd~LN~~~~~~~~~L~~-~~N~~~~~ 213 (248)
T cd04194 142 ---RLGGYDDGSYFNSGVLLINLKKWREENITEKLLELIKEYGGRLIYP-DQDILNAVLKDKILYLPP-RYNFQTGF 213 (248)
T ss_pred ---hcCCCcccceeeecchheeHHHHHHhhhHHHHHHHHHhCCCceeeC-ChHHHHHHHhCCeEEcCc-ccccchhH
Confidence 0123346789999999999999999999999999999998778888 799999999999999999 99997554
No 14
>cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis. The catalytic domain of LARGE is a putative glycosyltransferase. Mutations of LARGE in mouse and human cause dystroglycanopathies, a disease associated with hypoglycosylation of the membrane protein alpha-dystroglycan (alpha-DG) and consequent loss of extracellular ligand binding. LARGE needs to both physically interact with alpha-dystroglycan and function as a glycosyltransferase in order to stimulate alpha-dystroglycan hyperglycosylation. LARGE localizes to the Golgi apparatus and contains three conserved DxD motifs. While two of the motifs are indispensible for glycosylation function, one is important for localization of th eenzyme. LARGE was originally named because it covers approximately large trunck of genomic DNA, more than 600bp long. The predicted protein structure contains an N-terminal cytoplasmic domain, a transmembrane region, a coiled-coil
Probab=100.00 E-value=1.1e-35 Score=304.15 Aligned_cols=209 Identities=17% Similarity=0.287 Sum_probs=158.5
Q ss_pred eeEEEEeCcc-hhhHHHHHHHHhhcCCCCceEEEEEeCCCCHHHHHHHHhhCCCCCceEEEEEccCCccchhhhhhhhhc
Q 008524 308 HHYAVFSDNV-LACAVVVNSTVSFAKEPEKIVFHVVTDSLNLPAISMWFLLNPPGKATIQIQSIDNFNWLSTKYNATLKK 386 (563)
Q Consensus 308 iHIv~~sDnv-LaasVvI~Siv~Ns~~p~~i~FHIltd~is~~~mk~wf~~n~~~~a~Ie~i~i~~~~~l~~~~~~vl~~ 386 (563)
+-||++.+++ .+++|+|+|++.|+. ..++|||++++++.+.++.+.......+++|.|++++++. ..+ ..
T Consensus 3 ~~iv~~~~~y~~~~~~~i~Sil~n~~--~~~~fhii~d~~s~~~~~~l~~~~~~~~~~i~f~~i~~~~---~~~----~~ 73 (280)
T cd06431 3 VAIVCAGYNASRDVVTLVKSVLFYRR--NPLHFHLITDEIARRILATLFQTWMVPAVEVSFYNAEELK---SRV----SW 73 (280)
T ss_pred EEEEEccCCcHHHHHHHHHHHHHcCC--CCEEEEEEECCcCHHHHHHHHHhccccCcEEEEEEhHHhh---hhh----cc
Confidence 4577778665 579999999999985 4599999999999999888876656678899999986421 111 11
Q ss_pred cCCCCCCCCchh-hhhhhcccccccC-CCeEEEEecceeeccChHHHhcc--CCCC-CEEEEeecccchhhHHHhhhhcc
Q 008524 387 ENSHDPRYTSAL-NHLRFYLPDVFPA-LNKVLLFDHDVVVQSDLGRLWNI--DMKG-KVIGAVDTCKESEASFRRMDLFI 461 (563)
Q Consensus 387 l~s~~~~~iS~~-~y~RL~LPeLLP~-ldKVLYLD~DVIVq~DLseLw~i--DL~G-kviaAV~Dc~~~~~~~~r~~~~L 461 (563)
....++|.. +|+||+||++||+ ++||||||+|+||++||++||++ |+.| +++|||+|... .+.... .
T Consensus 74 ---~~~~~~s~~y~y~RL~ip~llp~~~dkvLYLD~Diiv~~di~eL~~~~~~~~~~~~~a~v~~~~~---~~~~~~--~ 145 (280)
T cd06431 74 ---IPNKHYSGIYGLMKLVLTEALPSDLEKVIVLDTDITFATDIAELWKIFHKFTGQQVLGLVENQSD---WYLGNL--W 145 (280)
T ss_pred ---CcccchhhHHHHHHHHHHHhchhhcCEEEEEcCCEEEcCCHHHHHHHhhhcCCCcEEEEeccchh---hhhhhh--h
Confidence 112355544 8899999999995 99999999999999999999999 7866 57777877543 111000 0
Q ss_pred CCCChhhhhhCCCCCCceeehhhHccHHHHHhhcHHHHHHHHHHHc---ccccccCCChHHHHHHhhcc---ceecCccc
Q 008524 462 NFSDPLIAKKFDVKACTWAFGMNLFDLQEWRKRKLTAVYHKYLQLV---CEYLRFCLNLHFLALLIASL---CYLLEQYI 535 (563)
Q Consensus 462 nfsnP~i~~~f~~~~cYFNSGVlLiDLkkWRe~nitek~l~~l~~n---~~~ll~~dDQDiLN~vf~g~---v~~Ld~~r 535 (563)
....| +.....|||||||||||++||++++++++..+.+++ ..++.++ |||+||++|.|+ |+.||+ +
T Consensus 146 ~~~~~-----~~~~~~yFNsGVmlinL~~wR~~~~~~~~~~~~~~~~~~~~~~~~~-DQDiLN~v~~~~~~~~~~L~~-~ 218 (280)
T cd06431 146 KNHRP-----WPALGRGFNTGVILLDLDKLRKMKWESMWRLTAERELMSMLSTSLA-DQDIFNAVIKQNPFLVYQLPC-A 218 (280)
T ss_pred hccCC-----CcccccceeeeeeeeeHHHHHhhCHHHHHHHHHHHHHhhcCCCCcC-cHHHHHHHHcCCcceeEECCC-c
Confidence 00011 112245999999999999999999999988777654 2356778 799999999999 899999 9
Q ss_pred ccccc
Q 008524 536 LVYHN 540 (563)
Q Consensus 536 WN~~g 540 (563)
||++.
T Consensus 219 wN~~~ 223 (280)
T cd06431 219 WNVQL 223 (280)
T ss_pred ccccc
Confidence 99984
No 15
>cd06432 GT8_HUGT1_C_like The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family. C-terminal domain of glycoprotein glucosyltransferase (UGT). UGT is a large glycoprotein whose C-terminus contains the catalytic activity. This catalytic C-terminal domain is highly homologous to Glycosyltransferase Family 8 (GT 8) and contains the DXD motif that coordinates donor sugar binding, characteristic for Family 8 glycosyltransferases. GT 8 proteins are retaining enzymes based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. The non-catalytic N-terminal portion of the human UTG1 (HUGT1) has been shown to monitor the protein folding status and activate its glucosyltransferase activity.
Probab=100.00 E-value=8e-36 Score=300.01 Aligned_cols=212 Identities=16% Similarity=0.198 Sum_probs=157.5
Q ss_pred eeEEEE-eCcc--hhhHHHHHHHHhhcCCCCceEEEEEeCCCCHHHHHHHHhhCCCCCceEEEEEccCCccchhhhhhhh
Q 008524 308 HHYAVF-SDNV--LACAVVVNSTVSFAKEPEKIVFHVVTDSLNLPAISMWFLLNPPGKATIQIQSIDNFNWLSTKYNATL 384 (563)
Q Consensus 308 iHIv~~-sDnv--LaasVvI~Siv~Ns~~p~~i~FHIltd~is~~~mk~wf~~n~~~~a~Ie~i~i~~~~~l~~~~~~vl 384 (563)
|||+.. +|+. .+++|+|.|++.|+. ..++|||++++++.+..+.+-.+....++.++++.++.-.|+.
T Consensus 1 ini~~~~~~~~y~~~~~v~l~Sll~nn~--~~~~fyil~~~is~e~~~~l~~~~~~~~~~i~~i~i~~~~~~~------- 71 (248)
T cd06432 1 INIFSVASGHLYERFLRIMMLSVMKNTK--SPVKFWFIKNFLSPQFKEFLPEMAKEYGFEYELVTYKWPRWLH------- 71 (248)
T ss_pred CeEEEEcCcHHHHHHHHHHHHHHHHcCC--CCEEEEEEeCCCCHHHHHHHHHHHHHhCCceEEEEecChhhhh-------
Confidence 466554 4443 479999999999985 5699999999999887777655555557889999885212221
Q ss_pred hccCCCCCCCCchhhhhhhcccccccC-CCeEEEEecceeeccChHHHhccCCCCCEEEEeecccchhhHHHhhhhccCC
Q 008524 385 KKENSHDPRYTSALNHLRFYLPDVFPA-LNKVLLFDHDVVVQSDLGRLWNIDMKGKVIGAVDTCKESEASFRRMDLFINF 463 (563)
Q Consensus 385 ~~l~s~~~~~iS~~~y~RL~LPeLLP~-ldKVLYLD~DVIVq~DLseLw~iDL~GkviaAV~Dc~~~~~~~~r~~~~Lnf 463 (563)
.. .... ....+|.||+++++||. ++||||||+|+||.+||++||++||+|+++|||+||.... .......+
T Consensus 72 -~~--~~~~-~~~~~y~rL~~~~lLP~~vdkvLYLD~Dilv~~dL~eL~~~dl~~~~~Aav~d~~~~~----~~~~~~~~ 143 (248)
T cd06432 72 -KQ--TEKQ-RIIWGYKILFLDVLFPLNVDKVIFVDADQIVRTDLKELMDMDLKGAPYGYTPFCDSRK----EMDGFRFW 143 (248)
T ss_pred -cc--cccc-hhHHHHHHHHHHHhhhhccCEEEEEcCCceecccHHHHHhcCcCCCeEEEeeccccch----hcccchhh
Confidence 00 0111 13567899999999995 9999999999999999999999999999999999987521 00000000
Q ss_pred CChhhhhhCCCCCCceeehhhHccHHHHHhhcHHHHHHHHHH---HcccccccCCChHHHHHHhhcc-ceecCccccccc
Q 008524 464 SDPLIAKKFDVKACTWAFGMNLFDLQEWRKRKLTAVYHKYLQ---LVCEYLRFCLNLHFLALLIASL-CYLLEQYILVYH 539 (563)
Q Consensus 464 snP~i~~~f~~~~cYFNSGVlLiDLkkWRe~nitek~l~~l~---~n~~~ll~~dDQDiLN~vf~g~-v~~Ld~~rWN~~ 539 (563)
......+.+ ....|||||||||||++||++++++++.++++ .+..++.++ |||+||+++.++ +++||+ +||++
T Consensus 144 ~~~~~~~~l-~~~~YfNSGVmliNL~~wR~~~i~~~~~~~~~~l~~~~~~l~~~-DQDiLN~v~~~~~i~~Lp~-~w~~~ 220 (248)
T cd06432 144 KQGYWKSHL-RGRPYHISALYVVDLKRFRRIAAGDRLRGQYQQLSQDPNSLANL-DQDLPNNMQHQVPIFSLPQ-EWLWC 220 (248)
T ss_pred hhhhhhhhc-CCCCccceeeEEEeHHHHHHHhHHHHHHHHHHHHhcCCCccccC-CchhhHHHhccCCeEECCh-HHHHH
Confidence 000001122 24569999999999999999999996666554 566678888 699999999996 999999 99986
No 16
>COG1442 RfaJ Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1e-34 Score=301.76 Aligned_cols=213 Identities=20% Similarity=0.252 Sum_probs=173.3
Q ss_pred ceeEEEEeCcch--hhHHHHHHHHhhcCCCCceEEEEEeCCCCHHHHHHHHhhCCCC--CceEEEEEccCCccchhhhhh
Q 008524 307 LHHYAVFSDNVL--ACAVVVNSTVSFAKEPEKIVFHVVTDSLNLPAISMWFLLNPPG--KATIQIQSIDNFNWLSTKYNA 382 (563)
Q Consensus 307 ~iHIv~~sDnvL--aasVvI~Siv~Ns~~p~~i~FHIltd~is~~~mk~wf~~n~~~--~a~Ie~i~i~~~~~l~~~~~~ 382 (563)
.++||+++|+++ +++|+|.|++.|++. -.+.|||++++++.+.++.+-...... .+.+.+++++.+. ++
T Consensus 2 ~~~Iv~a~D~nY~~~~gvsI~SiL~~n~~-~~~~fhil~~~i~~e~~~~l~~~~~~f~~~i~~~~id~~~~~----~~-- 74 (325)
T COG1442 2 TIPIAFAFDKNYLIPAGVSIYSLLEHNRK-IFYKFHILVDGLNEEDKKKLNETAEPFKSFIVLEVIDIEPFL----DY-- 74 (325)
T ss_pred cccEEEEcccccchhHHHHHHHHHHhCcc-ccEEEEEEecCCCHHHHHHHHHHHHhhccceeeEEEechhhh----cc--
Confidence 579999999953 799999999999985 369999999999999888876554433 3455566665442 11
Q ss_pred hhhccCCCCCCCCchhhhhhhcccccccCCCeEEEEecceeeccChHHHhccCCCCCEEEEeecccchhhHHHhhhhccC
Q 008524 383 TLKKENSHDPRYTSALNHLRFYLPDVFPALNKVLLFDHDVVVQSDLGRLWNIDMKGKVIGAVDTCKESEASFRRMDLFIN 462 (563)
Q Consensus 383 vl~~l~s~~~~~iS~~~y~RL~LPeLLP~ldKVLYLD~DVIVq~DLseLw~iDL~GkviaAV~Dc~~~~~~~~r~~~~Ln 462 (563)
. ..+.++|.++|+||+||++||+++|+||||+||||.|||++||.+|++|+++|||.|+.... ..++.
T Consensus 75 -----~-~~~~~~s~~v~~R~fiadlf~~~dK~lylD~Dvi~~g~l~~lf~~~~~~~~~aaV~D~~~~~-~~~~~----- 142 (325)
T COG1442 75 -----P-PFTKRFSKMVLVRYFLADLFPQYDKMLYLDVDVIFCGDLSELFFIDLEEYYLAAVRDVFSHY-MKEGA----- 142 (325)
T ss_pred -----c-ccccchHHHHHHHHHHHHhccccCeEEEEecCEEEcCcHHHHHhcCCCcceEEEEeehhhhh-hhhhh-----
Confidence 0 13478999999999999999999999999999999999999999999999999999987521 00100
Q ss_pred CCChhhhhhCCCCCCceeehhhHccHHHHHhhcHHHHHHHHHHHcccccccCCChHHHHHHhhccceecCcccccccccc
Q 008524 463 FSDPLIAKKFDVKACTWAFGMNLFDLQEWRKRKLTAVYHKYLQLVCEYLRFCLNLHFLALLIASLCYLLEQYILVYHNIL 542 (563)
Q Consensus 463 fsnP~i~~~f~~~~cYFNSGVlLiDLkkWRe~nitek~l~~l~~n~~~ll~~dDQDiLN~vf~g~v~~Ld~~rWN~~gl~ 542 (563)
.-.........|||||||++|++.||++++++++++++.+..+.+.++ |||+||.+|.|+|.+||. +||++...
T Consensus 143 ----~~~~~~~~~~~yFNaG~llinl~~W~~~~i~~k~i~~~~~~~~~~~~~-DQdiLN~i~~~~~~~L~~-~YN~~~~~ 216 (325)
T COG1442 143 ----LRLEKGDLEGSYFNAGVLLINLKLWREENIFEKLIELLKDKENDLLYP-DQDILNMIFEDRVLELPI-RYNAIPYI 216 (325)
T ss_pred ----hHhhhcccccccCccceeeehHHHHHHhhhHHHHHHHHhccccccCCc-cccHHHHHHHhhhhccCc-ccceeehh
Confidence 001112235779999999999999999999999999998888889999 699999999999999999 99998544
Q ss_pred cc
Q 008524 543 ND 544 (563)
Q Consensus 543 ~~ 544 (563)
..
T Consensus 217 ~~ 218 (325)
T COG1442 217 DS 218 (325)
T ss_pred hh
Confidence 33
No 17
>cd06430 GT8_like_2 GT8_like_2 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=100.00 E-value=2.1e-33 Score=289.23 Aligned_cols=218 Identities=14% Similarity=0.301 Sum_probs=152.7
Q ss_pred eeEEE-EeCcch-hhHHHHHHHHhhcCCCCceEEEEEeCC-CCHHH---HHHHHhhCCCCCceEEEEEccCCccchhh-h
Q 008524 308 HHYAV-FSDNVL-ACAVVVNSTVSFAKEPEKIVFHVVTDS-LNLPA---ISMWFLLNPPGKATIQIQSIDNFNWLSTK-Y 380 (563)
Q Consensus 308 iHIv~-~sDnvL-aasVvI~Siv~Ns~~p~~i~FHIltd~-is~~~---mk~wf~~n~~~~a~Ie~i~i~~~~~l~~~-~ 380 (563)
+|+++ +|++.+ .+-|+|+|++.|+. ..++|||++++ .+... ++.|-... ...+...++.+. ++.. +
T Consensus 1 ~~~~vv~~g~~~~~~~~~lkSil~~n~--~~l~Fhi~~d~~~~~~~~~~l~~~~~~~-~~~i~~~i~~I~----~P~~~~ 73 (304)
T cd06430 1 MHLAVVACGERLEETLTMLKSAIVFSQ--KPLRFHIFAEDQLKQSFKEKLDDWPELI-DRKFNYTLHPIT----FPSGNA 73 (304)
T ss_pred CEEEEEEcCCcHHHHHHHHHHHHHhCC--CCEEEEEEECCccCHHHHHHHHHHHHhc-cceeeeEEEEEe----cCccch
Confidence 45555 344444 57899999999985 46999999998 44433 44552211 122222444332 1211 1
Q ss_pred hhhhhccCCCCCCCCchhhhhhhcccccccCCCeEEEEecceeeccChHHHhcc--CCCCC-EEEEeecccchhhHHHhh
Q 008524 381 NATLKKENSHDPRYTSALNHLRFYLPDVFPALNKVLLFDHDVVVQSDLGRLWNI--DMKGK-VIGAVDTCKESEASFRRM 457 (563)
Q Consensus 381 ~~vl~~l~s~~~~~iS~~~y~RL~LPeLLP~ldKVLYLD~DVIVq~DLseLw~i--DL~Gk-viaAV~Dc~~~~~~~~r~ 457 (563)
+..+..+++++|+||++|++||+++||||||+|+||.+||++||++ |++|+ ++|+|++.... ...++
T Consensus 74 --------~~ws~l~~~~~y~RL~ip~lLp~~dkvLYLD~Dii~~~dI~eL~~~~~df~~~~~aA~v~e~~~~--~~~~~ 143 (304)
T cd06430 74 --------AEWKKLFKPCAAQRLFLPSLLPDVDSLLYVDTDILFLRPVEEIWSFLKKFNSTQLAAMAPEHEEP--NIGWY 143 (304)
T ss_pred --------hhhhhcccHHHHHHHHHHHHhhhhceEEEeccceeecCCHHHHHHHHhhcCCCeEEEEEeccccc--chhhh
Confidence 0122456679999999999999999999999999999999999999 99996 55555653321 11122
Q ss_pred hhccCCCChhhhhhCCCCCCceeehhhHccHHHHHh-----------hcHHHHHHHHHHHcccccccCCChHHHHHHhhc
Q 008524 458 DLFINFSDPLIAKKFDVKACTWAFGMNLFDLQEWRK-----------RKLTAVYHKYLQLVCEYLRFCLNLHFLALLIAS 526 (563)
Q Consensus 458 ~~~LnfsnP~i~~~f~~~~cYFNSGVlLiDLkkWRe-----------~nitek~l~~l~~n~~~ll~~dDQDiLN~vf~g 526 (563)
.... .+| + ....|||||||+|||++||+ .+++++++++++++..++.|+ |||+||++|.+
T Consensus 144 ~~~~--~~~-----~-~~~~gFNSGVmLmNL~~wR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-DQDiLN~v~~~ 214 (304)
T cd06430 144 NRFA--RHP-----Y-YGKTGVNSGVMLMNLTRMRRKYFKNDMTPVGLRWEEILMPLYKKYKLKITWG-DQDLINIIFHH 214 (304)
T ss_pred hhhc--ccC-----c-ccccccccceeeeeHHHHHhhhcccccchhhhhHHHHHHHHHHhcccCCCCC-CHHHHHHHHcC
Confidence 1100 112 1 12357999999999999999 789999999999999889999 69999999999
Q ss_pred c---ceecCccccccccccccccccccccC
Q 008524 527 L---CYLLEQYILVYHNILNDYLQVSCDTN 553 (563)
Q Consensus 527 ~---v~~Ld~~rWN~~gl~~~~l~~~~~~~ 553 (563)
+ +++||+ +||++. .......+|+..
T Consensus 215 ~p~~~~~Lp~-~wN~~~-d~~~y~~~~~~~ 242 (304)
T cd06430 215 NPEMLYVFPC-HWNYRP-DHCMYGSNCKAA 242 (304)
T ss_pred CCCeEEEcCc-cccCCc-cceeeccccccc
Confidence 8 899999 999874 222234556654
No 18
>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 8 GT8 from CAZY comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase (2.4.1.44 from EC), lipopolysaccharide glucosyltransferase 1 (2.4.1.58 from EC), glycogenin glucosyltransferase (2.4.1.186 from EC), inositol 1-alpha-galactosyltransferase (2.4.1.123 from EC). These enzymes have a distant similarity to family GT_24. ; GO: 0016757 transferase activity, transferring glycosyl groups; PDB: 1LL0_D 1ZCV_A 3USR_A 3V90_A 1ZCU_A 1ZCT_A 3V91_A 1ZCY_A 1ZDG_A 1ZDF_A ....
Probab=99.97 E-value=2.4e-31 Score=258.47 Aligned_cols=217 Identities=21% Similarity=0.308 Sum_probs=155.4
Q ss_pred eEEEEeCcc--hhhHHHHHHHHhhcCCCCceEEEEEeCCCCHHHHHHHHhhCCCCCceEEEEEccCCccchhhhhhhhhc
Q 008524 309 HYAVFSDNV--LACAVVVNSTVSFAKEPEKIVFHVVTDSLNLPAISMWFLLNPPGKATIQIQSIDNFNWLSTKYNATLKK 386 (563)
Q Consensus 309 HIv~~sDnv--LaasVvI~Siv~Ns~~p~~i~FHIltd~is~~~mk~wf~~n~~~~a~Ie~i~i~~~~~l~~~~~~vl~~ 386 (563)
||++++|.. .+++|+|+|++.|++++..++|||++++++.+..+.+............+...+. .... .+ .
T Consensus 1 ~i~~~~d~~y~~~~~v~i~Sl~~~~~~~~~~~i~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~-~~-----~ 73 (250)
T PF01501_consen 1 HIVLACDDNYLEGAAVLIKSLLKNNPDPSNLHIYIITDDISEEDFEKLRALAAEVIEIEPIEFPDI-SMLE-EF-----Q 73 (250)
T ss_dssp -EEEECSGGGHHHHHHHHHHHHHTTTT-SSEEEEEEESSS-HHHHHHHHHHSCCCCTTECEEETSG-GHHH--------T
T ss_pred CEEEEeCHHHHHHHHHHHHHHHHhccccccceEEEecCCCCHHHHHHHhhhcccccceeeeccchH-Hhhh-hh-----h
Confidence 799999984 3799999999999998778999999999998888776544332221212222211 1000 00 1
Q ss_pred cCCCCCCCCchhhhhhhcccccccCCCeEEEEecceeeccChHHHhccCCCCCEEEEeecccchhhHHHhhhhccCCCCh
Q 008524 387 ENSHDPRYTSALNHLRFYLPDVFPALNKVLLFDHDVVVQSDLGRLWNIDMKGKVIGAVDTCKESEASFRRMDLFINFSDP 466 (563)
Q Consensus 387 l~s~~~~~iS~~~y~RL~LPeLLP~ldKVLYLD~DVIVq~DLseLw~iDL~GkviaAV~Dc~~~~~~~~r~~~~LnfsnP 466 (563)
.......+++..+|+||++|++||+++||||||+|+||.+||.+||+++++|+.+|||+|+... ... +...+
T Consensus 74 ~~~~~~~~~~~~~~~rl~i~~ll~~~drilyLD~D~lv~~dl~~lf~~~~~~~~~~a~~~~~~~-----~~~---~~~~~ 145 (250)
T PF01501_consen 74 FNSPSKRHFSPATFARLFIPDLLPDYDRILYLDADTLVLGDLDELFDLDLQGKYLAAVEDESFD-----NFP---NKRFP 145 (250)
T ss_dssp TS-HCCTCGGGGGGGGGGHHHHSTTSSEEEEE-TTEEESS-SHHHHC---TTSSEEEEE----H-----HHH---TSTTS
T ss_pred hcccccccccHHHHHHhhhHHHHhhcCeEEEEcCCeeeecChhhhhcccchhhhccccccchhh-----hhh---hcccc
Confidence 1113457899999999999999999999999999999999999999999999999999994321 110 00001
Q ss_pred hhhhhCCCCCCceeehhhHccHHHHHhhcHHHHHHHHHHHcccccccCCChHHHHHHhhccceecCcccccccccc
Q 008524 467 LIAKKFDVKACTWAFGMNLFDLQEWRKRKLTAVYHKYLQLVCEYLRFCLNLHFLALLIASLCYLLEQYILVYHNIL 542 (563)
Q Consensus 467 ~i~~~f~~~~cYFNSGVlLiDLkkWRe~nitek~l~~l~~n~~~ll~~dDQDiLN~vf~g~v~~Ld~~rWN~~gl~ 542 (563)
..........+||||||||+|+++||++++.+++..+++.+.....++ ||++||.+|.+++..||. +||++..+
T Consensus 146 ~~~~~~~~~~~~fNsGv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-DQ~~ln~~~~~~~~~L~~-~~N~~~~~ 219 (250)
T PF01501_consen 146 FSERKQPGNKPYFNSGVMLFNPSKWRKENILQKLIEWLEQNGMKLGFP-DQDILNIVFYGNIKPLPC-RYNCQPSW 219 (250)
T ss_dssp SEEECESTTTTSEEEEEEEEEHHHHHHHHHHHHHHHHHHHTTTT-SSC-HHHHHHHHHTTGEEEEEG-GGSEEHHH
T ss_pred hhhcccCcccccccCcEEEEeechhhhhhhhhhhhhhhhhcccccCcC-chHHHhhhccceeEEECc-hhcccccc
Confidence 001123346899999999999999999999999999998887777777 699999999999999999 99997443
No 19
>cd02537 GT8_Glycogenin Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen. Glycogenin initiates the biosynthesis of glycogen by incorporating glucose residues through a self-glucosylation reaction at a Tyr residue, and then acts as substrate for chain elongation by glycogen synthase and branching enzyme. It contains a conserved DxD motif and an N-terminal beta-alpha-beta Rossmann-like fold that are common to the nucleotide-binding domains of most glycosyltransferases. The DxD motif is essential for coordination of the catalytic divalent cation, most commonly Mn2+. Glycogenin can be classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. It is placed in glycosyltransferase family 8 which includes lipopolysaccharide glucose and galactose transferases and galactinol synthases.
Probab=99.85 E-value=9.1e-21 Score=189.34 Aligned_cols=174 Identities=11% Similarity=0.053 Sum_probs=127.9
Q ss_pred EeCc-ch-hhHHHHHHHHhhcCCCCceEEEEEe-CCCCHHHHHHHHhhCCCCCceEEEEEccCCccchhhhhhhhhccCC
Q 008524 313 FSDN-VL-ACAVVVNSTVSFAKEPEKIVFHVVT-DSLNLPAISMWFLLNPPGKATIQIQSIDNFNWLSTKYNATLKKENS 389 (563)
Q Consensus 313 ~sDn-vL-aasVvI~Siv~Ns~~p~~i~FHIlt-d~is~~~mk~wf~~n~~~~a~Ie~i~i~~~~~l~~~~~~vl~~l~s 389 (563)
++|+ ++ +++|++.|+.+|+++ +.+||+. ++++.+.++.+.... .+++.++..+... .. .
T Consensus 7 ~~~~~Y~~~a~vl~~SL~~~~~~---~~~~vl~~~~is~~~~~~L~~~~------~~~~~v~~i~~~~-~~-----~--- 68 (240)
T cd02537 7 LTNDDYLPGALVLGYSLRKVGSS---YDLVVLVTPGVSEESREALEEVG------WIVREVEPIDPPD-SA-----N--- 68 (240)
T ss_pred ecChhHHHHHHHHHHHHHhcCCC---CCEEEEECCCCCHHHHHHHHHcC------CEEEecCccCCcc-hh-----h---
Confidence 3453 44 789999999999763 4566555 468888777665331 3344444322111 00 0
Q ss_pred CCCCCCchhhhhhhcccccccCCCeEEEEecceeeccChHHHhccCCCCCEEEEeecccchhhHHHhhhhccCCCChhhh
Q 008524 390 HDPRYTSALNHLRFYLPDVFPALNKVLLFDHDVVVQSDLGRLWNIDMKGKVIGAVDTCKESEASFRRMDLFINFSDPLIA 469 (563)
Q Consensus 390 ~~~~~iS~~~y~RL~LPeLLP~ldKVLYLD~DVIVq~DLseLw~iDL~GkviaAV~Dc~~~~~~~~r~~~~LnfsnP~i~ 469 (563)
....+++..+|.||+++++. .++||||||+|+||.+||.+||++ ++.+|||.|+..
T Consensus 69 ~~~~~~~~~~~~kl~~~~l~-~~drvlylD~D~~v~~~i~~Lf~~---~~~~~a~~d~~~-------------------- 124 (240)
T cd02537 69 LLKRPRFKDTYTKLRLWNLT-EYDKVVFLDADTLVLRNIDELFDL---PGEFAAAPDCGW-------------------- 124 (240)
T ss_pred hccchHHHHHhHHHHhcccc-ccceEEEEeCCeeEccCHHHHhCC---CCceeeecccCc--------------------
Confidence 01235678899999999974 699999999999999999999987 677888877531
Q ss_pred hhCCCCCCceeehhhHccHHHHHhhcHHHHHHHHHHHcccccccCCChHHHHHHhhcc--ceecCccccccccc
Q 008524 470 KKFDVKACTWAFGMNLFDLQEWRKRKLTAVYHKYLQLVCEYLRFCLNLHFLALLIASL--CYLLEQYILVYHNI 541 (563)
Q Consensus 470 ~~f~~~~cYFNSGVlLiDLkkWRe~nitek~l~~l~~n~~~ll~~dDQDiLN~vf~g~--v~~Ld~~rWN~~gl 541 (563)
..|||||||+||+.. ++.+.+++++..+.. ..++ |||+||.+|.++ |..||+ +||+...
T Consensus 125 ------~~~fNsGv~l~~~~~----~~~~~~~~~~~~~~~-~~~~-DQdiLN~~~~~~~~~~~l~~-~yN~~~~ 185 (240)
T cd02537 125 ------PDLFNSGVFVLKPSE----ETFNDLLDALQDTPS-FDGG-DQGLLNSYFSDRGIWKRLPF-TYNALKP 185 (240)
T ss_pred ------cccccceEEEEcCCH----HHHHHHHHHHhccCC-CCCC-CHHHHHHHHcCCCCEeECCc-ceeeehh
Confidence 248999999999854 566777888877654 5566 799999999999 999999 9998633
No 20
>PLN00176 galactinol synthase
Probab=99.80 E-value=7.8e-19 Score=183.75 Aligned_cols=200 Identities=12% Similarity=0.152 Sum_probs=127.1
Q ss_pred eeEEE--EeC-cch-hhHHHHHHHHhhcCCCCceEEEE-EeCCCCHHHHHHHHhhCCCCCceEEEEEccCCccchhhhhh
Q 008524 308 HHYAV--FSD-NVL-ACAVVVNSTVSFAKEPEKIVFHV-VTDSLNLPAISMWFLLNPPGKATIQIQSIDNFNWLSTKYNA 382 (563)
Q Consensus 308 iHIv~--~sD-nvL-aasVvI~Siv~Ns~~p~~i~FHI-ltd~is~~~mk~wf~~n~~~~a~Ie~i~i~~~~~l~~~~~~ 382 (563)
..+|. ++| +++ ++.|+.+|+.++.. ...++| ++++++.+..+.+-. -++ .+++++... .+...
T Consensus 23 ~AyVT~L~~n~~Y~~Ga~vL~~SLr~~~s---~~~lVvlVt~dVp~e~r~~L~~----~g~--~V~~V~~i~-~~~~~-- 90 (333)
T PLN00176 23 RAYVTFLAGNGDYVKGVVGLAKGLRKVKS---AYPLVVAVLPDVPEEHRRILVS----QGC--IVREIEPVY-PPENQ-- 90 (333)
T ss_pred eEEEEEEecCcchHHHHHHHHHHHHHhCC---CCCEEEEECCCCCHHHHHHHHH----cCC--EEEEecccC-Ccccc--
Confidence 44444 445 444 78899999987642 233444 457788766555421 122 334444321 01000
Q ss_pred hhhccCCCCCCCCchhhhhhhcccccccCCCeEEEEecceeeccChHHHhccCCCCCEEEEeecccchhh--HHHhh---
Q 008524 383 TLKKENSHDPRYTSALNHLRFYLPDVFPALNKVLLFDHDVVVQSDLGRLWNIDMKGKVIGAVDTCKESEA--SFRRM--- 457 (563)
Q Consensus 383 vl~~l~s~~~~~iS~~~y~RL~LPeLLP~ldKVLYLD~DVIVq~DLseLw~iDL~GkviaAV~Dc~~~~~--~~~r~--- 457 (563)
.+. ...+ -..+|.||.++++. +++||||||+|+||.++|.+||+++ +..+|||.||..... .+.++
T Consensus 91 --~~~---~~~~-~~i~~tKl~iw~l~-~ydkvlyLDaD~lv~~nid~Lf~~~--~~~~aAV~dc~~~~~~~~~p~~~~~ 161 (333)
T PLN00176 91 --TQF---AMAY-YVINYSKLRIWEFV-EYSKMIYLDGDIQVFENIDHLFDLP--DGYFYAVMDCFCEKTWSHTPQYKIG 161 (333)
T ss_pred --ccc---ccch-hhhhhhhhhhcccc-ccceEEEecCCEEeecChHHHhcCC--CcceEEEeccccccccccccccccc
Confidence 000 0111 13467899999966 6899999999999999999999874 346899999874210 00000
Q ss_pred -----hhccCCCChhhhhhCC-CCCCceeehhhHccHHHHHhhcHHHHHHHHHHHcccccccCCChHHHHHHhhccceec
Q 008524 458 -----DLFINFSDPLIAKKFD-VKACTWAFGMNLFDLQEWRKRKLTAVYHKYLQLVCEYLRFCLNLHFLALLIASLCYLL 531 (563)
Q Consensus 458 -----~~~LnfsnP~i~~~f~-~~~cYFNSGVlLiDLkkWRe~nitek~l~~l~~n~~~ll~~dDQDiLN~vf~g~v~~L 531 (563)
...++| |. ... +...||||||||||.+.|+.+++ +++++.+. ...|+ |||+||.+|.|+|.+|
T Consensus 162 ~c~~~~~~~~w--p~---~~g~~~~~yFNSGVlvinps~~~~~~l----l~~l~~~~-~~~f~-DQD~LN~~F~~~~~~L 230 (333)
T PLN00176 162 YCQQCPDKVTW--PA---ELGPPPPLYFNAGMFVFEPSLSTYEDL----LETLKITP-PTPFA-EQDFLNMFFRDIYKPI 230 (333)
T ss_pred ccccchhhccc--hh---hccCCCCCeEEeEEEEEEcCHHHHHHH----HHHHHhcC-CCCCC-CHHHHHHHHcCcEEEC
Confidence 001221 11 011 23579999999999999998665 45666554 35677 7999999999999999
Q ss_pred Ccccccccc
Q 008524 532 EQYILVYHN 540 (563)
Q Consensus 532 d~~rWN~~g 540 (563)
|. +||+..
T Consensus 231 p~-~YN~~~ 238 (333)
T PLN00176 231 PP-VYNLVL 238 (333)
T ss_pred Cc-hhcCch
Confidence 99 999863
No 21
>cd06914 GT8_GNT1 GNT1 is a fungal enzyme that belongs to the GT 8 family. N-acetylglucosaminyltransferase is a fungal enzyme that catalyzes the addition of N-acetyl-D-glucosamine to mannotetraose side chains by an alpha 1-2 linkage during the synthesis of mannan. The N-acetyl-D-glucosamine moiety in mannan plays a role in the attachment of mannan to asparagine residues in proteins. The mannotetraose and its N-acetyl-D-glucosamine derivative side chains of mannan are the principle immunochemical determinants on the cell surface. N-acetylglucosaminyltransferase is a member of glycosyltransferase family 8, which are, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed, retaining glycosyltransferases.
Probab=99.63 E-value=2.1e-15 Score=154.76 Aligned_cols=111 Identities=8% Similarity=0.057 Sum_probs=90.7
Q ss_pred CCCchhhhhhhcccccccCCCeEEEEecceeeccChHHHhccCCCCCEEEEeecccchhhHHHhhhhccCCCChhhhhhC
Q 008524 393 RYTSALNHLRFYLPDVFPALNKVLLFDHDVVVQSDLGRLWNIDMKGKVIGAVDTCKESEASFRRMDLFINFSDPLIAKKF 472 (563)
Q Consensus 393 ~~iS~~~y~RL~LPeLLP~ldKVLYLD~DVIVq~DLseLw~iDL~GkviaAV~Dc~~~~~~~~r~~~~LnfsnP~i~~~f 472 (563)
..++. +|.||.++++ ++++||||||+|+||.++|.+||+++.. ..+||+. ..
T Consensus 75 ~~~~~-~~tKl~~~~l-~~y~kvlyLDaD~l~~~~ideLf~~~~~-~~~Aap~-~~------------------------ 126 (278)
T cd06914 75 AYWAK-SLTKLRAFNQ-TEYDRIIYFDSDSIIRHPMDELFFLPNY-IKFAAPR-AY------------------------ 126 (278)
T ss_pred ccHHH-HHHHHHhccc-cceeeEEEecCChhhhcChHHHhcCCcc-cceeeec-Cc------------------------
Confidence 35554 4999999998 6899999999999999999999998833 3345432 10
Q ss_pred CCCCCceeehhhHccHHHHHhhcHHHHHHHHHHHcccccccCCChHHHHHHhhcc-------ceecCccccccc
Q 008524 473 DVKACTWAFGMNLFDLQEWRKRKLTAVYHKYLQLVCEYLRFCLNLHFLALLIASL-------CYLLEQYILVYH 539 (563)
Q Consensus 473 ~~~~cYFNSGVlLiDLkkWRe~nitek~l~~l~~n~~~ll~~dDQDiLN~vf~g~-------v~~Ld~~rWN~~ 539 (563)
-||||||||||++.|+.+++++++.++...+. .++ |||+||.+|.|. +..||...||+.
T Consensus 127 ----~~FNSGvmvi~ps~~~~~~l~~~~~~~~~~~~---~~~-DQdiLN~~~~~~~~~~~~~~~~Lp~~~y~ll 192 (278)
T cd06914 127 ----WKFASHLMVIKPSKEAFKELMTEILPAYLNKK---NEY-DMDLINEEFYNSKQLFKPSVLVLPHRQYGLL 192 (278)
T ss_pred ----ceecceeEEEeCCHHHHHHHHHHHHHhcccCC---CCC-ChHHHHHHHhCCccccCcceEEcCccccccC
Confidence 18999999999999999999999998765432 345 799999999999 999999339975
No 22
>KOG1879 consensus UDP-glucose:glycoprotein glucosyltransferase [Carbohydrate transport and metabolism]
Probab=99.14 E-value=7.9e-11 Score=136.95 Aligned_cols=217 Identities=16% Similarity=0.205 Sum_probs=158.9
Q ss_pred CCCceeEEEEeCcch---hhHHHHHHHHhhcCCCCceEEEEEeCCCCHHHHHHHHhhCCCCCceEEEEEccCCccchhhh
Q 008524 304 NPDLHHYAVFSDNVL---ACAVVVNSTVSFAKEPEKIVFHVVTDSLNLPAISMWFLLNPPGKATIQIQSIDNFNWLSTKY 380 (563)
Q Consensus 304 d~~~iHIv~~sDnvL---aasVvI~Siv~Ns~~p~~i~FHIltd~is~~~mk~wf~~n~~~~a~Ie~i~i~~~~~l~~~~ 380 (563)
|.+.|||.-.+-..+ -+-++|.|+++|++.| +.|+++-+-+|..-....-.++..+++.++++...=-.|+-
T Consensus 1178 ~~~vINIFSvASGHLYERflrIMm~SvlknTktp--VKFWfLkNyLSPtFKe~iP~mA~eYnFeyElv~YkWPrWLh--- 1252 (1470)
T KOG1879|consen 1178 DKEVINIFSVASGHLYERFLRIMMLSVLKNTKTP--VKFWFLKNYLSPTFKESIPHMAKEYNFEYELVQYKWPRWLH--- 1252 (1470)
T ss_pred ccceEEEEeeccccHHHHHHHHHHHHHHhCCCCc--eeEEeehhhcChHHHHHHHHHHHHhCceEEEEEecCchhhh---
Confidence 334788887555543 4789999999999976 99999999888655444444555678888888654222332
Q ss_pred hhhhhccCCCCCCCCchhhhhhhccccccc-CCCeEEEEecceeeccChHHHhccCCCCCEEEEeecccchhhHHHhhhh
Q 008524 381 NATLKKENSHDPRYTSALNHLRFYLPDVFP-ALNKVLLFDHDVVVQSDLGRLWNIDMKGKVIGAVDTCKESEASFRRMDL 459 (563)
Q Consensus 381 ~~vl~~l~s~~~~~iS~~~y~RL~LPeLLP-~ldKVLYLD~DVIVq~DLseLw~iDL~GkviaAV~Dc~~~~~~~~r~~~ 459 (563)
+.... .--+..|-=|||.=+|| +++||||.|+|-||+.||.||.+.||+|.+.|-++-|... +.+.+
T Consensus 1253 -----qQ~EK---QRiiWgyKILFLDVLFPL~v~KvIfVDADQIVR~DL~EL~dfdl~GaPygYtPfCdsR----~EMDG 1320 (1470)
T KOG1879|consen 1253 -----QQTEK---QRIIWGYKILFLDVLFPLNVDKVIFVDADQIVRADLKELMDFDLGGAPYGYTPFCDSR----REMDG 1320 (1470)
T ss_pred -----hhhhh---hhhhhhhhhhhhhhccccccceEEEEcchHhhhhhhHHHHhcccCCCccccCcccccc----ccccc
Confidence 21111 11256777788899999 4999999999999999999999999999999999999741 34455
Q ss_pred ccCCCChhhhhhCCCCCCceeehhhHccHHHHHhhcHHHHHHH-HHHHccc-ccccCCChHHHHHHhhc-cceecCcccc
Q 008524 460 FINFSDPLIAKKFDVKACTWAFGMNLFDLQEWRKRKLTAVYHK-YLQLVCE-YLRFCLNLHFLALLIAS-LCYLLEQYIL 536 (563)
Q Consensus 460 ~LnfsnP~i~~~f~~~~cYFNSGVlLiDLkkWRe~nitek~l~-~l~~n~~-~ll~~dDQDiLN~vf~g-~v~~Ld~~rW 536 (563)
|-.|+..++++.+. ...|-.|..-|+||++.|+..-..++.- |...-.| ..+.+.|||.=|.+..- -|+.||. .|
T Consensus 1321 yRFWK~GYW~~hL~-grkYHISALYVVDLkrFReiaAGDrLR~qYQ~LS~DPNSLsNLDQDLPNnm~hqVpIkSLPq-eW 1398 (1470)
T KOG1879|consen 1321 YRFWKQGYWKKHLR-GRKYHISALYVVDLKRFREIAAGDRLRGQYQALSQDPNSLSNLDQDLPNNMQHQVPIKSLPQ-EW 1398 (1470)
T ss_pred hhHHhhhHHHHHhc-cCccccceeeeeeHHHHHhcccchHHHHHHHhhcCCcchhhhccccccccceeecccccCCc-ch
Confidence 55566666666554 4789999999999999999988777764 3333222 23444489977766654 5788999 98
Q ss_pred ccc
Q 008524 537 VYH 539 (563)
Q Consensus 537 N~~ 539 (563)
=+|
T Consensus 1399 LWC 1401 (1470)
T KOG1879|consen 1399 LWC 1401 (1470)
T ss_pred hhh
Confidence 875
No 23
>COG5597 Alpha-N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=95.72 E-value=0.0065 Score=63.64 Aligned_cols=128 Identities=13% Similarity=0.109 Sum_probs=69.8
Q ss_pred hhhhhhcccccccCCCeEEEEecceeeccChHHHhccCCCCCEEEEeecccchhhHHHhhh-------------------
Q 008524 398 LNHLRFYLPDVFPALNKVLLFDHDVVVQSDLGRLWNIDMKGKVIGAVDTCKESEASFRRMD------------------- 458 (563)
Q Consensus 398 ~~y~RL~LPeLLP~ldKVLYLD~DVIVq~DLseLw~iDL~GkviaAV~Dc~~~~~~~~r~~------------------- 458 (563)
.++.++-+-+.- ++|||+|||+|.||.+.+.+||... -+-.+|.+|.......|+|.+
T Consensus 155 ~mftKLrVfeqt-EyDRvifLDsDaivlknmDklFd~P--vyef~a~pD~~~sp~~fhrp~~~i~~~ft~~faayg~~r~ 231 (368)
T COG5597 155 DMFTKLRVFEQT-EYDRVIFLDSDAIVLKNMDKLFDYP--VYEFAAAPDVYESPADFHRPNSGIFVSFTPAFAAYGKMRA 231 (368)
T ss_pred HHhHHHHhhhhh-hhceEEEeccchHHhhhhHHHhcch--hhhhccCCchhhCHHHhcCCCCccceeecHHHHhhcccHh
Confidence 445555544433 5899999999999999999999865 233444444321100122222
Q ss_pred ----hccCCC--Chhh-hhhCCCCCCceeehhhHccHHHHHhhcHHHHHHHHHHHcccccccCC----ChHHHHHHhhc-
Q 008524 459 ----LFINFS--DPLI-AKKFDVKACTWAFGMNLFDLQEWRKRKLTAVYHKYLQLVCEYLRFCL----NLHFLALLIAS- 526 (563)
Q Consensus 459 ----~~Lnfs--nP~i-~~~f~~~~cYFNSGVlLiDLkkWRe~nitek~l~~l~~n~~~ll~~d----DQDiLN~vf~g- 526 (563)
.|+++. ++.+ .+.+.+-+-+||||.||++-.+.-=..+ ..+. .+ -+|.| .|-.+|..+.-
T Consensus 232 ~ly~Pylf~a~~dq~~~hstpP~fk~~FnagLmv~~Psk~hm~ri----v~~a--lP--klydda~mmeqsllnlaYn~~ 303 (368)
T COG5597 232 ALYAPYLFWARTDQTFLHSTPPDFKLKFNAGLMVGLPSKMHMLRI----VWFA--LP--KLYDDADMMEQSLLNLAYNYE 303 (368)
T ss_pred hhccccccccccCCcccccCCCcHhhhhccCceeecchHHHHHHH----HHHh--hH--HhhhhhhHHHHHHHHHHHhhh
Confidence 233321 1111 1111123569999999999877654332 2111 11 12332 37788888643
Q ss_pred ---cceecCccccc
Q 008524 527 ---LCYLLEQYILV 537 (563)
Q Consensus 527 ---~v~~Ld~~rWN 537 (563)
-|..+++ +||
T Consensus 304 g~FPwerld~-~yN 316 (368)
T COG5597 304 GFFPWERLDP-RYN 316 (368)
T ss_pred ccCchhhcCc-ccc
Confidence 2445666 665
No 24
>PF03407 Nucleotid_trans: Nucleotide-diphospho-sugar transferase; InterPro: IPR005069 Proteins in this family have been been predicted to be nucleotide-diphospho-sugar transferases [].
Probab=94.00 E-value=0.071 Score=51.99 Aligned_cols=110 Identities=17% Similarity=0.118 Sum_probs=64.5
Q ss_pred hhhhhhhcc-cccccCCCeEEEEecceeeccChHHHhccCCCCCEEEEeecccchhhHHHhhhhccCCCChhhhhhCCCC
Q 008524 397 ALNHLRFYL-PDVFPALNKVLLFDHDVVVQSDLGRLWNIDMKGKVIGAVDTCKESEASFRRMDLFINFSDPLIAKKFDVK 475 (563)
Q Consensus 397 ~~~y~RL~L-PeLLP~ldKVLYLD~DVIVq~DLseLw~iDL~GkviaAV~Dc~~~~~~~~r~~~~LnfsnP~i~~~f~~~ 475 (563)
.....|.-+ -+++..=--|+|+|+|++..+|..+++ +-.+.-+.+..|+.... . ....
T Consensus 50 ~~~~~K~~~~~~~L~~G~~vl~~D~Dvv~~~dp~~~~--~~~~~Di~~~~d~~~~~-~------------------~~~~ 108 (212)
T PF03407_consen 50 KLTWLKPKVLLDLLELGYDVLFSDADVVWLRDPLPYF--ENPDADILFSSDGWDGT-N------------------SDRN 108 (212)
T ss_pred HHHHHHHHHHHHHHHcCCceEEecCCEEEecCcHHhh--ccCCCceEEecCCCccc-c------------------hhhc
Confidence 344444432 345544345999999999999999999 22344444444654310 0 0011
Q ss_pred CCceeehhhHccHHHHHhhcHHHHHH-HHHHHcccccccCCChHHHHHHhhcc--------ceecCc
Q 008524 476 ACTWAFGMNLFDLQEWRKRKLTAVYH-KYLQLVCEYLRFCLNLHFLALLIASL--------CYLLEQ 533 (563)
Q Consensus 476 ~cYFNSGVlLiDLkkWRe~nitek~l-~~l~~n~~~ll~~dDQDiLN~vf~g~--------v~~Ld~ 533 (563)
...+|+|++. +|...-+.+++ .|+.......... ||.+||.++.+. +..||.
T Consensus 109 ~~~~n~G~~~-----~r~t~~~~~~~~~w~~~~~~~~~~~-DQ~~~n~~l~~~~~~~~~~~~~~L~~ 169 (212)
T PF03407_consen 109 GNLVNTGFYY-----FRPTPRTIAFLEDWLERMAESPGCW-DQQAFNELLREQAARYGGLRVRFLPP 169 (212)
T ss_pred CCccccceEE-----EecCHHHHHHHHHHHHHHHhCCCcc-hHHHHHHHHHhcccCCcCcEEEEeCH
Confidence 2245999999 45544444443 4555544332223 799999999774 456776
No 25
>PF11051 Mannosyl_trans3: Mannosyltransferase putative; InterPro: IPR022751 Alpha-mannosyltransferase is responsible for the addition of residues to the outer chain of core N-linked polysaccharides and to O-linked mannotriose. It is implicated in late Golgi modifications [][][]. The proteins matching this entry are conserved in fungi and also found in some phototrophic organisms.; GO: 0006486 protein glycosylation
Probab=91.58 E-value=0.68 Score=47.77 Aligned_cols=108 Identities=15% Similarity=0.127 Sum_probs=63.4
Q ss_pred EEEEeCc-chh-hHHHHHHHHhhcCCCCceEEEEEe-CCCCHHHHHHHHhhCCCCCceEEEEEccCCccchhhhhhhhhc
Q 008524 310 YAVFSDN-VLA-CAVVVNSTVSFAKEPEKIVFHVVT-DSLNLPAISMWFLLNPPGKATIQIQSIDNFNWLSTKYNATLKK 386 (563)
Q Consensus 310 Iv~~sDn-vLa-asVvI~Siv~Ns~~p~~i~FHIlt-d~is~~~mk~wf~~n~~~~a~Ie~i~i~~~~~l~~~~~~vl~~ 386 (563)
||++.-+ ... +..+|+.+-. ..+.-.|.+..-. ++++.+..+.++. ...|.++++.... .+++.
T Consensus 4 IVi~~g~~~~~~a~~lI~~LR~-~g~~LPIEI~~~~~~dl~~~~~~~l~~-----~q~v~~vd~~~~~--~~~~~----- 70 (271)
T PF11051_consen 4 IVITAGDKYLWLALRLIRVLRR-LGNTLPIEIIYPGDDDLSKEFCEKLLP-----DQDVWFVDASCVI--DPDYL----- 70 (271)
T ss_pred EEEEecCccHHHHHHHHHHHHH-hCCCCCEEEEeCCccccCHHHHHHHhh-----hhhhheecceEEe--ecccc-----
Confidence 6666544 444 4456666654 4433345555554 4577777776653 3345566654311 11111
Q ss_pred cCCCCCCCCchhhhhhhcccccccCCCeEEEEecceeeccChHHHhccC
Q 008524 387 ENSHDPRYTSALNHLRFYLPDVFPALNKVLLFDHDVVVQSDLGRLWNID 435 (563)
Q Consensus 387 l~s~~~~~iS~~~y~RL~LPeLLP~ldKVLYLD~DVIVq~DLseLw~iD 435 (563)
...+....|..=.+.=++...+.||+||+|.|...|+..||+..
T Consensus 71 -----~~~~~~~~~~~K~lA~l~ssFeevllLDaD~vpl~~p~~lF~~~ 114 (271)
T PF11051_consen 71 -----GKSFSKKGFQNKWLALLFSSFEEVLLLDADNVPLVDPEKLFESE 114 (271)
T ss_pred -----ccccccCCchhhhhhhhhCCcceEEEEcCCcccccCHHHHhcCc
Confidence 01111114444445667777999999999999999999999853
No 26
>PF05637 Glyco_transf_34: galactosyl transferase GMA12/MNN10 family; InterPro: IPR008630 This family contains a number of glycosyltransferase enzymes that contain a DXD motif. This family includes a number of Caenorhabditis elegans homologues where the DXD is replaced by DXH. Some members of this family are included in glycosyltransferase family 34.; GO: 0016758 transferase activity, transferring hexosyl groups, 0016021 integral to membrane; PDB: 2P72_B 2P73_A 2P6W_A.
Probab=70.66 E-value=2.6 Score=42.88 Aligned_cols=114 Identities=11% Similarity=0.041 Sum_probs=12.6
Q ss_pred ccCCCeEEEEecceeeccChHHHhccCCCCCEEEE--eecccchhhHHHhhhhccCCCChhhhh-hCCCCCCceeehhhH
Q 008524 409 FPALNKVLLFDHDVVVQSDLGRLWNIDMKGKVIGA--VDTCKESEASFRRMDLFINFSDPLIAK-KFDVKACTWAFGMNL 485 (563)
Q Consensus 409 LP~ldKVLYLD~DVIVq~DLseLw~iDL~GkviaA--V~Dc~~~~~~~~r~~~~LnfsnP~i~~-~f~~~~cYFNSGVlL 485 (563)
+|+.+-|+|||+|.+|..-=-+|-+.=|+...+-- .+|.... ....+.+.-+..++.-.. ....+..++|+|+++
T Consensus 74 ~P~~~wv~~lD~Dali~n~~~~L~~~il~p~~L~~~~~r~~~~~--p~~~~~~~~~~~~~~~~~li~t~d~~gLNtGsFl 151 (239)
T PF05637_consen 74 YPEAEWVWWLDSDALIMNPDFSLEEHILSPSRLDSLLLRDVPIV--PPDSIIKTYSVIDGNDIHLIITQDWNGLNTGSFL 151 (239)
T ss_dssp -TT-SEEEEE-TTEEE----------------------------------------------------------------
T ss_pred CCCCCEEEEEcCCeEEEecccccccccccccccccccccccccc--cccccccccccccccccccccccccccccccccc
Confidence 48899999999999998644444332221111000 0110000 000000100111110001 122356799999999
Q ss_pred ccHHHHHhhcHHHHHHHHHHHccccc--ccCCChHHHHHHhhc
Q 008524 486 FDLQEWRKRKLTAVYHKYLQLVCEYL--RFCLNLHFLALLIAS 526 (563)
Q Consensus 486 iDLkkWRe~nitek~l~~l~~n~~~l--l~~dDQDiLN~vf~g 526 (563)
+=-..|-.. +.+...+..-...+.. .+. +|++|-.++.-
T Consensus 152 iRns~ws~~-fLd~w~~~~~~~~~~~~~~~~-EQsAl~~ll~~ 192 (239)
T PF05637_consen 152 IRNSPWSRD-FLDAWADPLYRNYDWDQLEFD-EQSALEHLLQW 192 (239)
T ss_dssp -------------------------------------------
T ss_pred ccccccccc-ccccccccccccccccccccc-ccccccccccc
Confidence 877777653 3233222222222221 233 69998877743
No 27
>PF03071 GNT-I: GNT-I family; InterPro: IPR004139 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GNT-I, GLCNAC-T I) 2.4.1.101 from EC transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide. This is an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus, and is probably distributed in all tissues. The catalytic domain is located at the C terminus []. These proteins are members of the glycosyl transferase family 13 (GH13 from CAZY); GO: 0003827 alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0006487 protein N-linked glycosylation, 0000139 Golgi membrane; PDB: 2APC_A 2AM4_A 1FO9_A 2AM3_A 1FOA_A 2AM5_A 1FO8_A.
Probab=70.48 E-value=13 Score=41.39 Aligned_cols=117 Identities=14% Similarity=0.169 Sum_probs=63.4
Q ss_pred CCceeEEE-EeCcchhhHHHHHHHHhhcCCCCceEEEEEeCCCCHHHHHHHHhhCCCCCceEEEEEccCCccchhhhhhh
Q 008524 305 PDLHHYAV-FSDNVLACAVVVNSTVSFAKEPEKIVFHVVTDSLNLPAISMWFLLNPPGKATIQIQSIDNFNWLSTKYNAT 383 (563)
Q Consensus 305 ~~~iHIv~-~sDnvLaasVvI~Siv~Ns~~p~~i~FHIltd~is~~~mk~wf~~n~~~~a~Ie~i~i~~~~~l~~~~~~v 383 (563)
...+.|++ +|+..-++.-+|.|++++....+.+.+.|--|+-+.+..+.... +.. .++.+.-.++. ++
T Consensus 92 ~~~~pVlV~AcNRp~yl~r~L~sLl~~rp~~~~fpIiVSQDg~~~~~~~vi~~---y~~-~v~~i~~~~~~-------~i 160 (434)
T PF03071_consen 92 EPVIPVLVFACNRPDYLRRTLDSLLKYRPSAEKFPIIVSQDGDDEEVAEVIKS---YGD-QVTYIQHPDFS-------PI 160 (434)
T ss_dssp -----EEEEESS-TT-HHHHHHHHHHH-S-TTTS-EEEEE-TT-HHHHHHHHG---GGG-GSEEEE-S--S---------
T ss_pred CCcceEEEEecCCcHHHHHHHHHHHHcCCCCCCccEEEEecCCcHHHHHHHHH---hhh-hheeeecCCcC-------Cc
Confidence 33556655 55557789999999999865545666777777766544443322 211 22222111111 11
Q ss_pred hhccCC--CCCCCCchhhhhhhcccccccC--CCeEEEEecceeeccChHHHhc
Q 008524 384 LKKENS--HDPRYTSALNHLRFYLPDVFPA--LNKVLLFDHDVVVQSDLGRLWN 433 (563)
Q Consensus 384 l~~l~s--~~~~~iS~~~y~RL~LPeLLP~--ldKVLYLD~DVIVq~DLseLw~ 433 (563)
... .. ....|..++.||+.-|-.+|.. +++||.|.+|+.|--|.=+-++
T Consensus 161 ~~~-~~~~~~~~y~~IA~HYk~aL~~vF~~~~~~~vIIlEDDL~isPDFf~Yf~ 213 (434)
T PF03071_consen 161 TIP-PKEKKFKGYYKIARHYKWALSQVFNKFKYSSVIILEDDLEISPDFFEYFS 213 (434)
T ss_dssp ----TT-GGGHHHHHHHHHHHHHHHHHHHTS--SEEEEEETTEEE-TTHHHHHH
T ss_pred eeC-cccccccchHHHHHHHHHHHHHHHHhcCCceEEEEecCcccCccHHHHHH
Confidence 000 00 0124677899999999999974 8999999999999999876665
No 28
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=70.39 E-value=18 Score=38.86 Aligned_cols=112 Identities=14% Similarity=0.105 Sum_probs=67.2
Q ss_pred eeEEEEeCc-chhhHHHHHHHHhhcCCCCceEEEEEeCCCCHHHHHHHHhhCCCCCceEEEEEccCCccchhhhhhhhhc
Q 008524 308 HHYAVFSDN-VLACAVVVNSTVSFAKEPEKIVFHVVTDSLNLPAISMWFLLNPPGKATIQIQSIDNFNWLSTKYNATLKK 386 (563)
Q Consensus 308 iHIv~~sDn-vLaasVvI~Siv~Ns~~p~~i~FHIltd~is~~~mk~wf~~n~~~~a~Ie~i~i~~~~~l~~~~~~vl~~ 386 (563)
++|++++=| .-++.-+|.|++.+.+.-....++|..|+-..+....... +. ..+.++.-.++ +...+ +
T Consensus 2 ~PVlv~ayNRp~~l~r~LesLl~~~p~~~~~~liIs~DG~~~~~~~~v~~---~~-~~i~~i~~~~~-----~~~~~--~ 70 (334)
T cd02514 2 IPVLVIACNRPDYLRRMLDSLLSYRPSAEKFPIIVSQDGGYEEVADVAKS---FG-DGVTHIQHPPI-----SIKNV--N 70 (334)
T ss_pred cCEEEEecCCHHHHHHHHHHHHhccccCCCceEEEEeCCCchHHHHHHHh---hc-cccEEEEcccc-----ccccc--C
Confidence 356665544 5688999999998742224578999999876544333211 11 12222211111 00000 0
Q ss_pred cCCCCCCCCchhhhhhhcccccccC--CCeEEEEecceeeccChHH
Q 008524 387 ENSHDPRYTSALNHLRFYLPDVFPA--LNKVLLFDHDVVVQSDLGR 430 (563)
Q Consensus 387 l~s~~~~~iS~~~y~RL~LPeLLP~--ldKVLYLD~DVIVq~DLse 430 (563)
.......|..++.|++.-+-.+|-. .++||.||+|+++--|.=+
T Consensus 71 ~~~~~~~y~~ia~hyk~aln~vF~~~~~~~vIILEDDl~~sPdFf~ 116 (334)
T cd02514 71 PPHKFQGYYRIARHYKWALTQTFNLFGYSFVIILEDDLDIAPDFFS 116 (334)
T ss_pred cccccchhhHHHHHHHHHHHHHHHhcCCCEEEEECCCCccCHhHHH
Confidence 0001124667888888888888875 8999999999999998443
No 29
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=68.61 E-value=22 Score=32.20 Aligned_cols=75 Identities=19% Similarity=0.211 Sum_probs=58.3
Q ss_pred chHHHHHHHHHHHHHHHhcccCCCCcccHHHHHHHHHHHHHHHHhhccccch-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 008524 184 SHLVKELKLRIKEVERAVGAATKDSDLSRRAFRRMNQMEATLDKASHVYPDC-SAMATKLRAMTYNAEERVRLQKNQA 260 (563)
Q Consensus 184 ~~~~~el~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~a~~~~~d~-~~~~~kl~~~~~~~e~~~~~~~~~~ 260 (563)
.++.-||+.-+.++|.+|......+ -.++.+.=.+.+..|.++|...-+- ..++.+-|+++..+|+-|+.+-=|+
T Consensus 11 ~~l~~el~~L~d~lEevL~ssg~~a--~~e~~~lR~r~~~~Lk~~r~rl~~~~d~v~~~sk~a~~~tD~yV~e~PWq~ 86 (104)
T COG4575 11 DQLLAELQELLDTLEEVLKSSGSLA--GDEAEELRSKAESALKEARDRLGDTGDAVVQRSKAAADATDDYVRENPWQG 86 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccch--hhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCchH
Confidence 6788899999999999998775544 2344444555678888888777666 7889999999999999998776554
No 30
>PF03414 Glyco_transf_6: Glycosyltransferase family 6; InterPro: IPR005076 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 6 GT6 from CAZY comprises enzymes with three known activities; alpha-1,3-galactosyltransferase (2.4.1.151 from EC); alpha-1,3 N-acetylgalactosaminyltransferase (2.4.1.40 from EC); alpha-galactosyltransferase (2.4.1.37 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0016020 membrane; PDB: 2Y7A_B 2O1G_A 1R82_A 2RJ1_A 3IOJ_B 2RJ4_A 3I0C_A 3SX8_A 1ZJ1_A 3I0E_A ....
Probab=61.75 E-value=1.2e+02 Score=32.90 Aligned_cols=199 Identities=11% Similarity=0.113 Sum_probs=95.0
Q ss_pred eeEEEEeC-cch-hhHHHHHHHHhhcCCCCceEEEEEeCCCCHHHHHHHHhhCCCCCceEEEEEccCCc-cchhhhhhhh
Q 008524 308 HHYAVFSD-NVL-ACAVVVNSTVSFAKEPEKIVFHVVTDSLNLPAISMWFLLNPPGKATIQIQSIDNFN-WLSTKYNATL 384 (563)
Q Consensus 308 iHIv~~sD-nvL-aasVvI~Siv~Ns~~p~~i~FHIltd~is~~~mk~wf~~n~~~~a~Ie~i~i~~~~-~l~~~~~~vl 384 (563)
|-+++++= .+. -+---+.|.=++=-...++++||+||..+.-. .....++.++.++.+.... |-. . .+
T Consensus 101 IGL~vfA~GkY~~fl~~Fl~SAek~Fm~g~~V~YYVFTD~p~~vP-----~i~l~~~r~~~V~~v~~~~~Wqd--~--sm 171 (337)
T PF03414_consen 101 IGLTVFATGKYIVFLKDFLESAEKHFMVGHRVIYYVFTDQPSKVP-----RIELGPGRRLKVFEVQEEKRWQD--I--SM 171 (337)
T ss_dssp EEEEEEE-CCHHHHHHHHHHHHHHHBSTTSEEEEEEEES-GGGS-----------TTEEEEEEE-SGGSSHHH--H--HH
T ss_pred EEEEEEecccHHHHHHHHHHhHHHhccCCcEEEEEEEeCchhhCC-----ccccCCCceeEEEEecccCCCcc--c--hh
Confidence 44444443 332 35567777777766667899999999754210 0111345667777765422 211 0 00
Q ss_pred hccCCCCCCCCchhhhhhhcccccccCCCeEEEEecceeeccChHHHhccCCCCCEEEEeecccchh-h---HHHhhhhc
Q 008524 385 KKENSHDPRYTSALNHLRFYLPDVFPALNKVLLFDHDVVVQSDLGRLWNIDMKGKVIGAVDTCKESE-A---SFRRMDLF 460 (563)
Q Consensus 385 ~~l~s~~~~~iS~~~y~RL~LPeLLP~ldKVLYLD~DVIVq~DLseLw~iDL~GkviaAV~Dc~~~~-~---~~~r~~~~ 460 (563)
..+.++..+..-.++-++|-+.++|+|+++++++.. ..=|..+|...--.-.. . .|.|-..
T Consensus 172 ----------~Rm~~i~~~i~~~~~~EvDYLFc~dvd~~F~~~vGv----E~Lg~lva~LHp~~y~~~~~~FpYERrp~- 236 (337)
T PF03414_consen 172 ----------MRMEMISEHIEQHIQHEVDYLFCMDVDMVFQDHVGV----EILGDLVATLHPWFYFKPRESFPYERRPK- 236 (337)
T ss_dssp ----------HHHHHHHHHHHHCHHHH-SEEEEEESSEEE-S-B-G----GG-SSEEEEESTTTTTSTGGGS--B-STT-
T ss_pred ----------HHHHHHHHHHHHHHhhcCCEEEEEecceEEecccCH----HHHHHHHHHhCHHHHCCChhhCccccCcc-
Confidence 113334444445567789999999999999998764 22266777655322110 0 1111100
Q ss_pred cCCCChhhhhhCCCCCCceeehhhHccHHHHHhhcHHHHHHHHHHH---cccccccCCChHHHHHHhh-cc-ceecCccc
Q 008524 461 INFSDPLIAKKFDVKACTWAFGMNLFDLQEWRKRKLTAVYHKYLQL---VCEYLRFCLNLHFLALLIA-SL-CYLLEQYI 535 (563)
Q Consensus 461 LnfsnP~i~~~f~~~~cYFNSGVlLiDLkkWRe~nitek~l~~l~~---n~~~ll~~dDQDiLN~vf~-g~-v~~Ld~~r 535 (563)
|...| .++.+..|+.+|++===..+- .++++.|+.-+.. |.=...|+ |.-.||-.|- ++ .+.|++ +
T Consensus 237 ---S~AyI--p~~eGDfYY~ga~fGGt~~~v--l~Lt~~c~~~i~~D~~n~I~A~Wh-DESHLNKYfl~~KPtKvLSP-E 307 (337)
T PF03414_consen 237 ---SQAYI--PYGEGDFYYHGAFFGGTVEEV--LRLTEACHQGIMQDKANGIEALWH-DESHLNKYFLYHKPTKVLSP-E 307 (337)
T ss_dssp ---STTB----TT--S--EECCEEEECHHHH--HHHHHHHHHHHHHHHHTT---TTC-HHHHHHHHHHHS--SEEE-G-G
T ss_pred ---ccccc--cCCCCCeEEeceecCCcHHHH--HHHHHHHHHHHHhhhhcCceEecc-chhhhHHHHhhCCCceecCH-H
Confidence 11111 133455566666653111111 1345555554433 33356888 6889999774 43 678988 7
Q ss_pred cccc
Q 008524 536 LVYH 539 (563)
Q Consensus 536 WN~~ 539 (563)
|+..
T Consensus 308 Y~Wd 311 (337)
T PF03414_consen 308 YCWD 311 (337)
T ss_dssp GSBS
T ss_pred HccC
Confidence 7664
No 31
>KOG1928 consensus Alpha-1,4-N-acetylglucosaminyltransferase [Carbohydrate transport and metabolism]
Probab=61.41 E-value=3.8 Score=44.69 Aligned_cols=32 Identities=28% Similarity=0.361 Sum_probs=22.6
Q ss_pred hhhhhhcccccccCCCeEEEEecceeeccChHHHhc
Q 008524 398 LNHLRFYLPDVFPALNKVLLFDHDVVVQSDLGRLWN 433 (563)
Q Consensus 398 ~~y~RL~LPeLLP~ldKVLYLD~DVIVq~DLseLw~ 433 (563)
....|+.+=-=+-. ||||+||||.+++++|=+
T Consensus 228 Sdl~RLA~LyKYGG----vYLDTDvIvLksl~~l~N 259 (409)
T KOG1928|consen 228 SDLSRLALLYKYGG----VYLDTDVIVLKSLSNLRN 259 (409)
T ss_pred HHHHHHHHHHHhCC----EEeeccEEEecccccccc
Confidence 34556554322222 899999999999999875
No 32
>PRK10132 hypothetical protein; Provisional
Probab=61.03 E-value=49 Score=30.07 Aligned_cols=76 Identities=12% Similarity=0.059 Sum_probs=57.8
Q ss_pred chHHHHHHHHHHHHHHHhcccCCCCcccHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008524 184 SHLVKELKLRIKEVERAVGAATKDSDLSRRAFRRMNQMEATLDKASHVYPDCSAMATKLRAMTYNAEERVRLQKNQAT 261 (563)
Q Consensus 184 ~~~~~el~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~a~~~~~d~~~~~~kl~~~~~~~e~~~~~~~~~~~ 261 (563)
++|..||+.-+.++|.+|.++..++ -+.+.+.=.+.+..|..||+...|...+..+.|.....+++-++.+--++.
T Consensus 15 e~L~~Dl~~L~~~le~ll~~~~~~~--~~~~~~lR~r~~~~L~~ar~~l~~~~~~~~~~~~a~~~~~~~V~~~Pw~sv 90 (108)
T PRK10132 15 QDIQNDVNQLADSLESVLKSWGSDA--KGEAEAARRKAQALLKETRARMHGRTRVQQAARDAVGCADTFVRERPWCSV 90 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCcHHHH
Confidence 6888999999999998887665443 223444445567788899888887777778889999999999997766653
No 33
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=56.60 E-value=90 Score=26.36 Aligned_cols=42 Identities=10% Similarity=-0.052 Sum_probs=27.5
Q ss_pred EEeCcchhhHHHHHHHHhhcCCCCceEEEEEeCCCCHHHHHHHH
Q 008524 312 VFSDNVLACAVVVNSTVSFAKEPEKIVFHVVTDSLNLPAISMWF 355 (563)
Q Consensus 312 ~~sDnvLaasVvI~Siv~Ns~~p~~i~FHIltd~is~~~mk~wf 355 (563)
.+.++.-.+.-++.|+..... ....++|++++.+......+.
T Consensus 4 ~~~~~~~~l~~~l~s~~~~~~--~~~~i~i~~~~~~~~~~~~~~ 45 (156)
T cd00761 4 PAYNEEPYLERCLESLLAQTY--PNFEVIVVDDGSTDGTLEILE 45 (156)
T ss_pred eecCcHHHHHHHHHHHHhCCc--cceEEEEEeCCCCccHHHHHH
Confidence 344444456778889888764 347888999887655554444
No 34
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=51.09 E-value=60 Score=32.54 Aligned_cols=109 Identities=13% Similarity=0.152 Sum_probs=72.1
Q ss_pred cccCchHHHHHhhHHHHHHHHHH--hhCCCCCCchHHHHHHHHHHHHHHHhccc--CCCCcccHHHHHHHHHHHHHHHHh
Q 008524 153 LLRVSDEKIKEMKDQVIRAQAYL--NFAPPGSNSHLVKELKLRIKEVERAVGAA--TKDSDLSRRAFRRMNQMEATLDKA 228 (563)
Q Consensus 153 ~~~~~d~~~~~~~dq~~~a~ay~--~~a~~~~~~~~~~el~~~~~e~~~~~~~~--~~~~~~~~~~~~~~~~m~~~~~~a 228 (563)
|..+-|..++.|.|+|.-||.=+ .+|....-.+=..++...+.+.+.--..| ..+.+|-..+......-+..+...
T Consensus 25 P~~~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~~~~~~~~l 104 (219)
T TIGR02977 25 PEKMIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAALIEKQKAQELAEAL 104 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 34578899999999998887743 34433333333344455555544322222 345567777777777777777777
Q ss_pred hccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008524 229 SHVYPDCSAMATKLRAMTYNAEERVRLQKNQAT 261 (563)
Q Consensus 229 ~~~~~d~~~~~~kl~~~~~~~e~~~~~~~~~~~ 261 (563)
+..+-.-...+.+|+.-+..+|.++...+.+..
T Consensus 105 ~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~ 137 (219)
T TIGR02977 105 ERELAAVEETLAKLQEDIAKLQAKLAEARARQK 137 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777788888999999999888887665543
No 35
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=46.73 E-value=1.9e+02 Score=25.38 Aligned_cols=88 Identities=15% Similarity=0.117 Sum_probs=47.6
Q ss_pred hhhHHHHHHHHhhcCCCCceEEEEEeCCCCHHHHHHHHhhCCCCCceEEEEEccCCccchhhhhhhhhccCCCCCCCCch
Q 008524 318 LACAVVVNSTVSFAKEPEKIVFHVVTDSLNLPAISMWFLLNPPGKATIQIQSIDNFNWLSTKYNATLKKENSHDPRYTSA 397 (563)
Q Consensus 318 LaasVvI~Siv~Ns~~p~~i~FHIltd~is~~~mk~wf~~n~~~~a~Ie~i~i~~~~~l~~~~~~vl~~l~s~~~~~iS~ 397 (563)
-.+.-++.|+..... ....+.|+.++-..+....+....+ .+.++.... +.+.
T Consensus 10 ~~l~~~l~sl~~~~~--~~~~iiivdd~s~~~~~~~~~~~~~----~~~~~~~~~----~~g~----------------- 62 (166)
T cd04186 10 EYLKACLDSLLAQTY--PDFEVIVVDNASTDGSVELLRELFP----EVRLIRNGE----NLGF----------------- 62 (166)
T ss_pred HHHHHHHHHHHhccC--CCeEEEEEECCCCchHHHHHHHhCC----CeEEEecCC----CcCh-----------------
Confidence 346778899987654 2467888888765444333322211 344443221 0010
Q ss_pred hhhhhhcccccccCCCeEEEEecceeeccC-hHHHhcc
Q 008524 398 LNHLRFYLPDVFPALNKVLLFDHDVVVQSD-LGRLWNI 434 (563)
Q Consensus 398 ~~y~RL~LPeLLP~ldKVLYLD~DVIVq~D-LseLw~i 434 (563)
..-...-+... ..+-++++|+|.++..+ +..+++.
T Consensus 63 ~~a~n~~~~~~--~~~~i~~~D~D~~~~~~~l~~~~~~ 98 (166)
T cd04186 63 GAGNNQGIREA--KGDYVLLLNPDTVVEPGALLELLDA 98 (166)
T ss_pred HHHhhHHHhhC--CCCEEEEECCCcEECccHHHHHHHH
Confidence 00011111111 56889999999999766 6666663
No 36
>PRK10807 paraquat-inducible protein B; Provisional
Probab=45.91 E-value=74 Score=36.48 Aligned_cols=45 Identities=13% Similarity=0.214 Sum_probs=24.7
Q ss_pred cccHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHH
Q 008524 209 DLSRRAFRRMNQMEATLDKASHVYPDCSAMATKLRAMTYNAEERVRLQK 257 (563)
Q Consensus 209 ~~~~~~~~~~~~m~~~~~~a~~~~~d~~~~~~kl~~~~~~~e~~~~~~~ 257 (563)
.+|.++.+.+++++.++..++ .|... -..|++++..+++-++..+
T Consensus 473 ~Lp~~L~~TL~~l~~~l~~~~---~~s~~-~~~l~~tl~~l~~~~r~lr 517 (547)
T PRK10807 473 QLPADMQKTLRELNRSMQGFQ---PGSPA-YNKMVADMQRLDQVLRELQ 517 (547)
T ss_pred HHHHHHHHHHHHHHHHHhhcC---CCChH-HHHHHHHHHHHHHHHHHHH
Confidence 455566666666666665543 33332 3566666666666666433
No 37
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=45.34 E-value=84 Score=31.13 Aligned_cols=108 Identities=19% Similarity=0.263 Sum_probs=72.9
Q ss_pred ccCchHHHHHhhHHHHHHHHHH--hhCCCCCCchHHHHHHHHHHHHHHHhccc--CCCCcccHHHHHHHHHHHHHHHHhh
Q 008524 154 LRVSDEKIKEMKDQVIRAQAYL--NFAPPGSNSHLVKELKLRIKEVERAVGAA--TKDSDLSRRAFRRMNQMEATLDKAS 229 (563)
Q Consensus 154 ~~~~d~~~~~~~dq~~~a~ay~--~~a~~~~~~~~~~el~~~~~e~~~~~~~~--~~~~~~~~~~~~~~~~m~~~~~~a~ 229 (563)
..+-|..|+.|.+++.-|+.=+ .+|....-.+-..+....+.+.+.-...| ..+.+|-..+.......+..+...+
T Consensus 25 ~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~~~~l~ 104 (221)
T PF04012_consen 25 EKMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLEEQAERLE 104 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888999999998887633 33332222323333444444443322222 4455788888888888888888888
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008524 230 HVYPDCSAMATKLRAMTYNAEERVRLQKNQAT 261 (563)
Q Consensus 230 ~~~~d~~~~~~kl~~~~~~~e~~~~~~~~~~~ 261 (563)
...-....-+.+|+.-+..++.++...+.+-.
T Consensus 105 ~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~ 136 (221)
T PF04012_consen 105 QQLDQAEAQVEKLKEQLEELEAKLEELKSKRE 136 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888899999999999988887665543
No 38
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=44.29 E-value=2.5e+02 Score=27.23 Aligned_cols=102 Identities=11% Similarity=0.044 Sum_probs=54.7
Q ss_pred ceeEEEEeCc-chhhHHHHHHHHhhcCCCCceEEEEEeCCCCHHHHHHHHhhCCCCCceEEEEEccCCccchhhhhhhhh
Q 008524 307 LHHYAVFSDN-VLACAVVVNSTVSFAKEPEKIVFHVVTDSLNLPAISMWFLLNPPGKATIQIQSIDNFNWLSTKYNATLK 385 (563)
Q Consensus 307 ~iHIv~~sDn-vLaasVvI~Siv~Ns~~p~~i~FHIltd~is~~~mk~wf~~n~~~~a~Ie~i~i~~~~~l~~~~~~vl~ 385 (563)
.+-|++.+=| .-.+.-+|.|+......+..+.+-|+.|+-+............. .+.++..+.
T Consensus 30 ~isVvip~~n~~~~l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~---~v~~i~~~~------------- 93 (251)
T cd06439 30 TVTIIIPAYNEEAVIEAKLENLLALDYPRDRLEIIVVSDGSTDGTAEIAREYADK---GVKLLRFPE------------- 93 (251)
T ss_pred EEEEEEecCCcHHHHHHHHHHHHhCcCCCCcEEEEEEECCCCccHHHHHHHHhhC---cEEEEEcCC-------------
Confidence 4667776655 44567788998875543333677777776553333222112111 344443221
Q ss_pred ccCCCCCCCCchhhhhhhcccccccCCCeEEEEecceeeccC-hHHHhcc
Q 008524 386 KENSHDPRYTSALNHLRFYLPDVFPALNKVLLFDHDVVVQSD-LGRLWNI 434 (563)
Q Consensus 386 ~l~s~~~~~iS~~~y~RL~LPeLLP~ldKVLYLD~DVIVq~D-LseLw~i 434 (563)
+.. ...-....+... .-+=|+++|+|.++..+ |..|++.
T Consensus 94 -----~~g---~~~a~n~gi~~a--~~d~i~~lD~D~~~~~~~l~~l~~~ 133 (251)
T cd06439 94 -----RRG---KAAALNRALALA--TGEIVVFTDANALLDPDALRLLVRH 133 (251)
T ss_pred -----CCC---hHHHHHHHHHHc--CCCEEEEEccccCcCHHHHHHHHHH
Confidence 000 111111222221 12889999999999865 7888875
No 39
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=43.72 E-value=1.7e+02 Score=25.27 Aligned_cols=30 Identities=17% Similarity=0.103 Sum_probs=21.0
Q ss_pred chhhHHHHHHHHhhcCCCCceEEEEEeCCCCH
Q 008524 317 VLACAVVVNSTVSFAKEPEKIVFHVVTDSLNL 348 (563)
Q Consensus 317 vLaasVvI~Siv~Ns~~p~~i~FHIltd~is~ 348 (563)
.-.+.-+|.|++.... ....+.|+.++-+.
T Consensus 9 ~~~l~~~l~sl~~q~~--~~~~iivvdd~s~d 38 (180)
T cd06423 9 EAVIERTIESLLALDY--PKLEVIVVDDGSTD 38 (180)
T ss_pred HHHHHHHHHHHHhCCC--CceEEEEEeCCCcc
Confidence 3456678899987664 34788888887554
No 40
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=43.64 E-value=1.8e+02 Score=25.21 Aligned_cols=91 Identities=12% Similarity=0.055 Sum_probs=52.3
Q ss_pred CcchhhHHHHHHHHhhcCCCCceEEEEEeCCCC---HHHHHHHHhhCCCCCceEEEEEccCCccchhhhhhhhhccCCCC
Q 008524 315 DNVLACAVVVNSTVSFAKEPEKIVFHVVTDSLN---LPAISMWFLLNPPGKATIQIQSIDNFNWLSTKYNATLKKENSHD 391 (563)
Q Consensus 315 DnvLaasVvI~Siv~Ns~~p~~i~FHIltd~is---~~~mk~wf~~n~~~~a~Ie~i~i~~~~~l~~~~~~vl~~l~s~~ 391 (563)
+..-.+.-++.|+..... ....+.|+.|+-+ .+.++.+.. ....++++..++-
T Consensus 8 n~~~~l~~~l~sl~~q~~--~~~eiivvdd~s~d~~~~~~~~~~~----~~~~i~~i~~~~n------------------ 63 (169)
T PF00535_consen 8 NEAEYLERTLESLLKQTD--PDFEIIVVDDGSTDETEEILEEYAE----SDPNIRYIRNPEN------------------ 63 (169)
T ss_dssp S-TTTHHHHHHHHHHHSG--CEEEEEEEECS-SSSHHHHHHHHHC----CSTTEEEEEHCCC------------------
T ss_pred CCHHHHHHHHHHHhhccC--CCEEEEEeccccccccccccccccc----ccccccccccccc------------------
Confidence 444457788889988833 3588888888764 333444432 3456777655421
Q ss_pred CCCCchhhhhhhcccccccCCCeEEEEecceeeccC-hHHHhcc
Q 008524 392 PRYTSALNHLRFYLPDVFPALNKVLLFDHDVVVQSD-LGRLWNI 434 (563)
Q Consensus 392 ~~~iS~~~y~RL~LPeLLP~ldKVLYLD~DVIVq~D-LseLw~i 434 (563)
.....-....+-..- -+-|+++|+|.++..+ |..|.+.
T Consensus 64 ---~g~~~~~n~~~~~a~--~~~i~~ld~D~~~~~~~l~~l~~~ 102 (169)
T PF00535_consen 64 ---LGFSAARNRGIKHAK--GEYILFLDDDDIISPDWLEELVEA 102 (169)
T ss_dssp ---SHHHHHHHHHHHH----SSEEEEEETTEEE-TTHHHHHHHH
T ss_pred ---ccccccccccccccc--eeEEEEeCCCceEcHHHHHHHHHH
Confidence 011111122222222 2489999999999987 8888875
No 41
>PF10819 DUF2564: Protein of unknown function (DUF2564) ; InterPro: IPR020314 This entry contains proteins with no known function.
Probab=40.70 E-value=1.5e+02 Score=25.74 Aligned_cols=69 Identities=19% Similarity=0.268 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHhcccCC--CCcccHHHHHHHHHHHHHHHHhhccc--cchHHHHHHHHHHHHHHHHHHHHHH
Q 008524 188 KELKLRIKEVERAVGAATK--DSDLSRRAFRRMNQMEATLDKASHVY--PDCSAMATKLRAMTYNAEERVRLQK 257 (563)
Q Consensus 188 ~el~~~~~e~~~~~~~~~~--~~~~~~~~~~~~~~m~~~~~~a~~~~--~d~~~~~~kl~~~~~~~e~~~~~~~ 257 (563)
+++.-.|+-.|+++|.|+. |.++-+++.+.++.-..-|.+|++.. .|- .+...=...|+..|-|+..+|
T Consensus 6 kQve~aVetAqkmvG~AT~smdp~~Le~A~qAve~Ar~ql~~a~~~at~lD~-~Fl~~~~~~L~~~eHQL~Eak 78 (79)
T PF10819_consen 6 KQVEMAVETAQKMVGQATMSMDPDQLEHATQAVEDAREQLSQAKSHATGLDE-PFLQQSEQLLDDCEHQLDEAK 78 (79)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcH-HHHHHHHHHHHHHHHHHHHhc
Confidence 5677789999999999855 55666788888888887788887655 444 667788888888998888665
No 42
>PF04488 Gly_transf_sug: Glycosyltransferase sugar-binding region containing DXD motif ; InterPro: IPR007577 This entry represents those sugar-binding regions of glycosyltransferases that contain a DXD motif. The DXD motif is a short conserved motif found in many families of glycosyltransferases, which add a range of different sugars to other sugars, phosphates and proteins. DXD-containing glycosyltransferases all use nucleoside diphosphate sugars as donors and require divalent cations, usually manganese. The DXD motif is expected to play a carbohydrate binding role in sugar-nucleoside diphosphate and manganese dependent glycosyltransferases [].
Probab=36.66 E-value=19 Score=31.42 Aligned_cols=35 Identities=20% Similarity=0.362 Sum_probs=27.8
Q ss_pred CCCchhhhhhhcccccccCCCeEEEEecceeeccCh-HHH
Q 008524 393 RYTSALNHLRFYLPDVFPALNKVLLFDHDVVVQSDL-GRL 431 (563)
Q Consensus 393 ~~iS~~~y~RL~LPeLLP~ldKVLYLD~DVIVq~DL-seL 431 (563)
.+...+-++|+.+--..-. ||+|.|+++.+++ .++
T Consensus 61 ~~~~~sD~~R~~~L~~~GG----iY~D~D~~~~rpl~~~~ 96 (103)
T PF04488_consen 61 NYAHKSDLLRYLVLYKYGG----IYLDLDVICLRPLDDPW 96 (103)
T ss_pred chHHHHHHHHHHHHHHcCc----EEEeCccccCcchhhhh
Confidence 3455688899988776665 8999999999999 554
No 43
>PRK10698 phage shock protein PspA; Provisional
Probab=36.12 E-value=1.4e+02 Score=30.21 Aligned_cols=108 Identities=12% Similarity=0.169 Sum_probs=69.9
Q ss_pred cccCchHHHHHhhHHHHHHHHHH--hhCCCCCCchHHHHHHHHHHHHHHHhccc--CCCCcccHHHHHHHHHHHHHHHHh
Q 008524 153 LLRVSDEKIKEMKDQVIRAQAYL--NFAPPGSNSHLVKELKLRIKEVERAVGAA--TKDSDLSRRAFRRMNQMEATLDKA 228 (563)
Q Consensus 153 ~~~~~d~~~~~~~dq~~~a~ay~--~~a~~~~~~~~~~el~~~~~e~~~~~~~~--~~~~~~~~~~~~~~~~m~~~~~~a 228 (563)
|..+-+..++.|+|++.=+|.=+ .+|....-.+-..++...+.+.++--.-| ..+.+|-..++..-+.....+...
T Consensus 25 P~k~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~~~~~~~l 104 (222)
T PRK10698 25 PQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKLTDLIATL 104 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 33467888999999998776633 33333333333344444444443311111 345568777766666677777777
Q ss_pred hccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008524 229 SHVYPDCSAMATKLRAMTYNAEERVRLQKNQA 260 (563)
Q Consensus 229 ~~~~~d~~~~~~kl~~~~~~~e~~~~~~~~~~ 260 (563)
+...-.....+.+|+.-+..++.++..++.+-
T Consensus 105 ~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~ 136 (222)
T PRK10698 105 EHEVTLVDETLARMKKEIGELENKLSETRARQ 136 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77778888888999999999998888766443
No 44
>PF04765 DUF616: Protein of unknown function (DUF616); InterPro: IPR006852 The entry represents a protein of unknown function. The function of is unknown although a number of the members are thought to be glycosyltransferases.
Probab=33.91 E-value=1.1e+02 Score=32.60 Aligned_cols=95 Identities=13% Similarity=0.110 Sum_probs=60.1
Q ss_pred ceEEEEEeCCCCHHHHHHHHhhCC--CCCceEEEEEccCCccchhhhhhhhhccCCCCCCCCchhhhhhhcccccccCCC
Q 008524 336 KIVFHVVTDSLNLPAISMWFLLNP--PGKATIQIQSIDNFNWLSTKYNATLKKENSHDPRYTSALNHLRFYLPDVFPALN 413 (563)
Q Consensus 336 ~i~FHIltd~is~~~mk~wf~~n~--~~~a~Ie~i~i~~~~~l~~~~~~vl~~l~s~~~~~iS~~~y~RL~LPeLLP~ld 413 (563)
++.|.+++|..+...++.--.... ..-...+++.++....-+ + +. ..-+.+++...+||+++
T Consensus 91 ~vcf~mF~D~~t~~~l~~~~~~~~~~~~ig~WrIv~v~~lp~~d----~-------rr-----~~r~~K~lpHrlfp~y~ 154 (305)
T PF04765_consen 91 NVCFFMFVDEETLKSLESEGHIPDENKKIGIWRIVVVKNLPYDD----P-------RR-----NGRIPKLLPHRLFPNYD 154 (305)
T ss_pred CccEEEEEehhhHHHHHhcCCccccccccCceEEEEecCCCCcc----h-------hh-----cCcccceeccccCCCCc
Confidence 589999999988777654111111 011234555554321000 1 10 12355788888999999
Q ss_pred eEEEEecceeeccChHHHhccCC--CCCEEEEeec
Q 008524 414 KVLLFDHDVVVQSDLGRLWNIDM--KGKVIGAVDT 446 (563)
Q Consensus 414 KVLYLD~DVIVq~DLseLw~iDL--~GkviaAV~D 446 (563)
--||+|+-+-+.+|+..|-+-=+ ++..+|+...
T Consensus 155 ySIWID~ki~L~~Dp~~lie~~l~~~~~~~Ai~~H 189 (305)
T PF04765_consen 155 YSIWIDGKIQLIVDPLLLIERFLWRKNADIAISKH 189 (305)
T ss_pred eEEEEeeeEEEecCHHHHHHHHHhcCCCcEEEeCC
Confidence 99999999999999988777544 4556777554
No 45
>PLN03182 xyloglucan 6-xylosyltransferase; Provisional
Probab=33.35 E-value=60 Score=36.08 Aligned_cols=34 Identities=18% Similarity=0.297 Sum_probs=26.2
Q ss_pred CCCCchhhhhhhcccccccCCCeEEEEecceeecc
Q 008524 392 PRYTSALNHLRFYLPDVFPALNKVLLFDHDVVVQS 426 (563)
Q Consensus 392 ~~~iS~~~y~RL~LPeLLP~ldKVLYLD~DVIVq~ 426 (563)
+..|+...++|=.+-. +|+.+-+.|||+|.||..
T Consensus 179 p~~WaKlpaLR~aM~~-~PeaEWiWWLDsDALImN 212 (429)
T PLN03182 179 AGFWAKLPLLRKLMLA-HPEVEWIWWMDSDALFTD 212 (429)
T ss_pred CcchhHHHHHHHHHHH-CCCceEEEEecCCceeec
Confidence 4567666666655443 799999999999999986
No 46
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=31.29 E-value=1.8e+02 Score=24.82 Aligned_cols=61 Identities=15% Similarity=0.218 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHhcccCCCCcccHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHH
Q 008524 188 KELKLRIKEVERAVGAATKDSDLSRRAFRRMNQMEATLDKASHVYPDCSAMATKLRAMTYNAEERVR 254 (563)
Q Consensus 188 ~el~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~a~~~~~d~~~~~~kl~~~~~~~e~~~~ 254 (563)
+.+++-++|+++.+. .+..++.+..+++..++.+++...-|...-..++..+..+.++--.
T Consensus 22 ~~l~~~l~~~~~ti~------~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~v~~~g~ 82 (90)
T PF06103_consen 22 KKLKKTLDEVNKTID------TLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPVFEAVADLGE 82 (90)
T ss_pred HHHHHHHHHHHHHHH------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 445555556555554 2344667778888888888888888888887888777777665433
No 47
>PF05704 Caps_synth: Capsular polysaccharide synthesis protein; InterPro: IPR008441 This entry consists of several capsular polysaccharide proteins. Capsular polysaccharide (CPS) is a major virulence factor in Streptococcus pneumoniae. This family is often transcribed with putative glycosyl transferases to give rise to bifunctional proteins [].
Probab=31.28 E-value=75 Score=33.15 Aligned_cols=100 Identities=16% Similarity=0.108 Sum_probs=59.8
Q ss_pred CCCCCCceeEEEEe--Ccch-hhHHHHHHHHhhcCCCCceEEEEEeCCCCHHHHHHHHhhCCCCCceEEEEEccCCccch
Q 008524 301 DLHNPDLHHYAVFS--DNVL-ACAVVVNSTVSFAKEPEKIVFHVVTDSLNLPAISMWFLLNPPGKATIQIQSIDNFNWLS 377 (563)
Q Consensus 301 ~l~d~~~iHIv~~s--DnvL-aasVvI~Siv~Ns~~p~~i~FHIltd~is~~~mk~wf~~n~~~~a~Ie~i~i~~~~~l~ 377 (563)
..+++..|.++=.. |+.- -+-.++.|+-+++++ ..++|++. ++++.+.. +.++ +.
T Consensus 41 ~~~~~k~IW~~W~QG~e~aP~~Vk~ci~s~~k~~~~---~~Vi~lt~----~Ni~~Yv~-------------~P~~--i~ 98 (276)
T PF05704_consen 41 PETNEKIIWVCWWQGEENAPEIVKKCINSWRKNAPD---YEVILLTE----DNIKDYVD-------------IPDF--IL 98 (276)
T ss_pred cCCCCCcEEEEECCCccccCHHHHHHHHHHHHHCCC---CeEEEECh----HHHHHHcC-------------Cchh--HH
Confidence 34455557766653 3332 357899999999953 78888885 34554421 1111 11
Q ss_pred hhhhhhhhccCCCCCCCCchhhhhhhcccccccCCCeEEEEecceeeccChHHHhc
Q 008524 378 TKYNATLKKENSHDPRYTSALNHLRFYLPDVFPALNKVLLFDHDVVVQSDLGRLWN 433 (563)
Q Consensus 378 ~~~~~vl~~l~s~~~~~iS~~~y~RL~LPeLLP~ldKVLYLD~DVIVq~DLseLw~ 433 (563)
++...+....--.+-++|+.|=.-.-. +|+|++|.+.++|.+.+.
T Consensus 99 -------~k~~~g~i~~a~~SDilR~~LL~~yGG----vWiDatv~~t~~l~~~~~ 143 (276)
T PF05704_consen 99 -------EKYEKGKISPAHFSDILRLALLYKYGG----VWIDATVYLTKPLDDEIF 143 (276)
T ss_pred -------HHHHcCCCchhHHHHHHHHHHHHHcCc----EEeCCceEECCchhHHHh
Confidence 111111112223456789887555554 899999999999997755
No 48
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=30.89 E-value=3.9e+02 Score=25.40 Aligned_cols=96 Identities=20% Similarity=0.159 Sum_probs=52.9
Q ss_pred eEEEEe-Ccc-hhhHHHHHHHHhhcCCCCceEEEEEeCCCCHHHHHHHHhhCCCCCceEEEEEccCCccchhhhhhhhhc
Q 008524 309 HYAVFS-DNV-LACAVVVNSTVSFAKEPEKIVFHVVTDSLNLPAISMWFLLNPPGKATIQIQSIDNFNWLSTKYNATLKK 386 (563)
Q Consensus 309 HIv~~s-Dnv-LaasVvI~Siv~Ns~~p~~i~FHIltd~is~~~mk~wf~~n~~~~a~Ie~i~i~~~~~l~~~~~~vl~~ 386 (563)
-|++.+ ++. -.+.-+|.|+...+ .+.+.|+.++-+.+....+....... .+.++....
T Consensus 3 sVvIp~~ne~~~~l~~~l~sl~~q~----~~eiivvdd~s~d~~~~~l~~~~~~~--~~~v~~~~~-------------- 62 (235)
T cd06434 3 TVIIPVYDEDPDVFRECLRSILRQK----PLEIIVVTDGDDEPYLSILSQTVKYG--GIFVITVPH-------------- 62 (235)
T ss_pred EEEEeecCCChHHHHHHHHHHHhCC----CCEEEEEeCCCChHHHHHHHhhccCC--cEEEEecCC--------------
Confidence 455554 444 45778899998765 36788888876654443332122222 233332111
Q ss_pred cCCCCCCCCchhhhhhhcccccccCCCeEEEEecceeeccC-hHHHhcc
Q 008524 387 ENSHDPRYTSALNHLRFYLPDVFPALNKVLLFDHDVVVQSD-LGRLWNI 434 (563)
Q Consensus 387 l~s~~~~~iS~~~y~RL~LPeLLP~ldKVLYLD~DVIVq~D-LseLw~i 434 (563)
....... ..-+.. ...+-|++||+|+++..| |..|...
T Consensus 63 -----~g~~~a~---n~g~~~--a~~d~v~~lD~D~~~~~~~l~~l~~~ 101 (235)
T cd06434 63 -----PGKRRAL---AEGIRH--VTTDIVVLLDSDTVWPPNALPEMLKP 101 (235)
T ss_pred -----CChHHHH---HHHHHH--hCCCEEEEECCCceeChhHHHHHHHh
Confidence 0000001 111111 156999999999999877 7777764
No 49
>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=30.51 E-value=21 Score=38.42 Aligned_cols=24 Identities=21% Similarity=0.369 Sum_probs=18.4
Q ss_pred hCCCCCCceeehhhHccHHHHHhh
Q 008524 471 KFDVKACTWAFGMNLFDLQEWRKR 494 (563)
Q Consensus 471 ~f~~~~cYFNSGVlLiDLkkWRe~ 494 (563)
++....+||||||.+|.-..+.++
T Consensus 186 yv~sG~y~WNSGmF~Fra~~~l~e 209 (333)
T COG0836 186 YVESGEYLWNSGMFLFRASVFLEE 209 (333)
T ss_pred HHHcCceEeeccceEEEHHHHHHH
Confidence 344567999999999987776654
No 50
>PRK10404 hypothetical protein; Provisional
Probab=30.09 E-value=2.7e+02 Score=25.00 Aligned_cols=78 Identities=14% Similarity=0.197 Sum_probs=54.6
Q ss_pred CCCchHHHHHHHHHHHHHHHhcccCCCCcccHHHHHHHHHHHHHHHHhhccccchHH-HHHHHHHHHHHHHHHHHHHHHH
Q 008524 181 GSNSHLVKELKLRIKEVERAVGAATKDSDLSRRAFRRMNQMEATLDKASHVYPDCSA-MATKLRAMTYNAEERVRLQKNQ 259 (563)
Q Consensus 181 ~~~~~~~~el~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~a~~~~~d~~~-~~~kl~~~~~~~e~~~~~~~~~ 259 (563)
.+.+++..||+.-+.++|.++..+..++ -+.+.+.=...+..|..+|...-|... +..+.|++...+++-++.+--|
T Consensus 5 ~~~~~l~~dl~~L~~dle~Ll~~~~~~a--~e~~~~lR~r~~~~L~~ar~~l~~~~~~~~~~~k~aa~~td~yV~e~Pw~ 82 (101)
T PRK10404 5 FGDTRIDDDLTLLSETLEEVLRSSGDPA--DQKYVELKARAEKALDDVKKRVSQASDSYYYRAKQAVYRADDYVHEKPWQ 82 (101)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHhhhhh--HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCcHH
Confidence 4667888999999999999987665442 223444445556677777755555444 3456799999999999976655
Q ss_pred H
Q 008524 260 A 260 (563)
Q Consensus 260 ~ 260 (563)
+
T Consensus 83 a 83 (101)
T PRK10404 83 G 83 (101)
T ss_pred H
Confidence 4
No 51
>PLN02867 Probable galacturonosyltransferase
Probab=29.68 E-value=1.9e+02 Score=33.27 Aligned_cols=77 Identities=13% Similarity=0.075 Sum_probs=59.7
Q ss_pred CCCchHHHHHHHHHHHHHHHhcccCCCC--cccHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHH
Q 008524 181 GSNSHLVKELKLRIKEVERAVGAATKDS--DLSRRAFRRMNQMEATLDKASHVYPDCSAMATKLRAMTYNAEERVRLQKN 258 (563)
Q Consensus 181 ~~~~~~~~el~~~~~e~~~~~~~~~~~~--~~~~~~~~~~~~m~~~~~~a~~~~~d~~~~~~kl~~~~~~~e~~~~~~~~ 258 (563)
....++.+|+.+.+.|... .+..... +.|+++++.+.+|...-..++....-.++|..++...+.+.-.|..+...
T Consensus 89 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~kl~am~~~~e~~~~~~~~~~~~~~~ 166 (535)
T PLN02867 89 DTSLKLREELTRALVEAKE--QDDGGRGTKGSTESFNDLVKEMTSNRQDIKAFAFRTKAMLLKMERKVQSARQRESIYWH 166 (535)
T ss_pred CchhHHHHHHHHHHHHhhh--ccccCcchhhhhhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456799999999999544 3333333 68999999999999988888888888899988888888887777665544
Q ss_pred H
Q 008524 259 Q 259 (563)
Q Consensus 259 ~ 259 (563)
=
T Consensus 167 l 167 (535)
T PLN02867 167 L 167 (535)
T ss_pred H
Confidence 3
No 52
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=28.84 E-value=1.8e+02 Score=29.74 Aligned_cols=101 Identities=18% Similarity=0.309 Sum_probs=52.5
Q ss_pred cCchHHHHHhhHHHHHHHHHH--hhCCCCCCchHHHHH---HHHHHHHHHHhccc--CCCCcccHHHHHHHHHHHHHHHH
Q 008524 155 RVSDEKIKEMKDQVIRAQAYL--NFAPPGSNSHLVKEL---KLRIKEVERAVGAA--TKDSDLSRRAFRRMNQMEATLDK 227 (563)
Q Consensus 155 ~~~d~~~~~~~dq~~~a~ay~--~~a~~~~~~~~~~el---~~~~~e~~~~~~~~--~~~~~~~~~~~~~~~~m~~~~~~ 227 (563)
.+-|..|+.|+++|.-|+-=+ .||. ..+|-+++ ..+..+.+.---.| ..+.+|-..+...+...+..+..
T Consensus 27 ~~l~Q~ird~~~~l~~ar~~~A~~~a~---~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le~~~~~ 103 (225)
T COG1842 27 KMLEQAIRDMESELAKARQALAQAIAR---QKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLEDLAKA 103 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Confidence 456666777777766555432 2221 12222222 22233322211111 23345556666666666666666
Q ss_pred hhccccchHHHHHHHHHHHHHHHHHHHHHHH
Q 008524 228 ASHVYPDCSAMATKLRAMTYNAEERVRLQKN 258 (563)
Q Consensus 228 a~~~~~d~~~~~~kl~~~~~~~e~~~~~~~~ 258 (563)
-+...-.......+||..+..+|.++...+.
T Consensus 104 ~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~ 134 (225)
T COG1842 104 LEAELQQAEEQVEKLKKQLAALEQKIAELRA 134 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6566666666677777777777776654443
No 53
>cd02515 Glyco_transf_6 Glycosyltransferase family 6 comprises enzymes responsible for the production of the human ABO blood group antigens. Glycosyltransferase family 6, GT_6, comprises enzymes with three known activities: alpha-1,3-galactosyltransferase, alpha-1,3 N-acetylgalactosaminyltransferase, and alpha-galactosyltransferase. UDP-galactose:beta-galactosyl alpha-1,3-galactosyltransferase (alpha3GT) catalyzes the transfer of galactose from UDP-alpha-d-galactose into an alpha-1,3 linkage with beta-galactosyl groups in glycoconjugates. The enzyme exists in most mammalian species but is absent from humans, apes, and old world monkeys as a result of the mutational inactivation of the gene. The alpha-1,3 N-acetylgalactosaminyltransferase and alpha-galactosyltransferase are responsible for the production of the human ABO blood group antigens. A N-acetylgalactosaminyltransferases use a UDP-GalNAc donor to convert the H-antigen acceptor to the A antigen, whereas a galactosyltransferase use
Probab=28.48 E-value=1.2e+02 Score=31.90 Aligned_cols=199 Identities=12% Similarity=0.085 Sum_probs=104.4
Q ss_pred ceeEEEEeCc-ch-hhHHHHHHHHhhcCCCCceEEEEEeCCCCHHHHHHHHhhCCCCCceEEEEEccC-Cccchhhhhhh
Q 008524 307 LHHYAVFSDN-VL-ACAVVVNSTVSFAKEPEKIVFHVVTDSLNLPAISMWFLLNPPGKATIQIQSIDN-FNWLSTKYNAT 383 (563)
Q Consensus 307 ~iHIv~~sDn-vL-aasVvI~Siv~Ns~~p~~i~FHIltd~is~~~mk~wf~~n~~~~a~Ie~i~i~~-~~~l~~~~~~v 383 (563)
.|-|.+++=. +. -.---+.|.=++=-...+++++|+||.-..-. .....++.+++++.+.+ ..|-..+
T Consensus 35 tIgl~vfatGkY~~f~~~F~~SAEk~Fm~g~~v~YyVFTD~~~~~p-----~v~lg~~r~~~V~~v~~~~~W~~~s---- 105 (271)
T cd02515 35 TIGLTVFAVGKYTEFLERFLESAEKHFMVGYRVIYYIFTDKPAAVP-----EVELGPGRRLTVLKIAEESRWQDIS---- 105 (271)
T ss_pred EEEEEEEEeccHHHHHHHHHHHHHHhccCCCeeEEEEEeCCcccCc-----ccccCCCceeEEEEeccccCCcHHH----
Confidence 3555554443 32 34556677777665556799999999643200 11123456677877743 2232110
Q ss_pred hhccCCCCCCCCchhhhhhhcccccccCCCeEEEEecceeeccChH-HHhccCCCCCEEEEeecccchh-h---HHHhhh
Q 008524 384 LKKENSHDPRYTSALNHLRFYLPDVFPALNKVLLFDHDVVVQSDLG-RLWNIDMKGKVIGAVDTCKESE-A---SFRRMD 458 (563)
Q Consensus 384 l~~l~s~~~~~iS~~~y~RL~LPeLLP~ldKVLYLD~DVIVq~DLs-eLw~iDL~GkviaAV~Dc~~~~-~---~~~r~~ 458 (563)
+ ..+.++...-...++-++|-+.++|+|+++++.+. |. | |..+|...--.-.. + .|.|-.
T Consensus 106 l----------~Rm~~~~~~~~~~~~~e~DYlF~~dvd~~F~~~ig~E~----L-g~lva~lHp~~y~~~~~~fpYERrp 170 (271)
T cd02515 106 M----------RRMKTLADHIADRIGHEVDYLFCMDVDMVFQGPFGVET----L-GDSVAQLHPWWYGKPRKQFPYERRP 170 (271)
T ss_pred H----------HHHHHHHHHHHHhhcccCCEEEEeeCCceEeecCCHHH----h-hhhheecChhhhcCCCCCCCCcCCC
Confidence 0 11222333333445567999999999999999887 22 2 33444433111000 0 111110
Q ss_pred hccCCCChhhhhhCCCCCCceeehhhHccHHHHHhhcHHHHHHHHHHH---cccccccCCChHHHHHHhhc-c-ceecCc
Q 008524 459 LFINFSDPLIAKKFDVKACTWAFGMNLFDLQEWRKRKLTAVYHKYLQL---VCEYLRFCLNLHFLALLIAS-L-CYLLEQ 533 (563)
Q Consensus 459 ~~LnfsnP~i~~~f~~~~cYFNSGVlLiDLkkWRe~nitek~l~~l~~---n~~~ll~~dDQDiLN~vf~g-~-v~~Ld~ 533 (563)
. |...| .++.+.-|+.+||+==-.++.. ++++.|+.-+.. |.=...|+ |.-.||..|-. + .+.|++
T Consensus 171 ~----S~AyI--p~~eGdfYy~Ga~~GG~~~~vl--~l~~~c~~~i~~D~~n~I~A~wH-DESHLNkYf~~~Kp~KiLSP 241 (271)
T cd02515 171 S----SAAYI--PEGEGDFYYHGAVFGGSVEEVY--RLTRACHEGILADKANGIEARWH-DESHLNKYFLLHKPTKVLSP 241 (271)
T ss_pred C----ccccc--cCCCCCeEEeeeecCccHHHHH--HHHHHHHHHHHHHHhCCceEEee-cHhHhHHHHhhCCCCeecCh
Confidence 0 00011 1334566777777732222221 234555554433 22234788 68899988854 3 788999
Q ss_pred cccccc
Q 008524 534 YILVYH 539 (563)
Q Consensus 534 ~rWN~~ 539 (563)
.|...
T Consensus 242 -eY~w~ 246 (271)
T cd02515 242 -EYLWD 246 (271)
T ss_pred -hhcCC
Confidence 88775
No 54
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=27.99 E-value=1.4e+02 Score=29.71 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=20.3
Q ss_pred cCCCeEEEEecceeeccC-hHHHhcc
Q 008524 410 PALNKVLLFDHDVVVQSD-LGRLWNI 434 (563)
Q Consensus 410 P~ldKVLYLD~DVIVq~D-LseLw~i 434 (563)
..-+=|+.+|+|+++..| |..++..
T Consensus 72 a~~e~i~~~DaD~~~~~~~l~~l~~~ 97 (244)
T cd04190 72 DDPEFILLVDADTKFDPDSIVQLYKA 97 (244)
T ss_pred CCCCEEEEECCCCcCCHhHHHHHHHH
Confidence 347889999999999988 6777753
No 55
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=26.86 E-value=2.8e+02 Score=23.87 Aligned_cols=75 Identities=21% Similarity=0.198 Sum_probs=46.1
Q ss_pred hHHHHHHHHHHHHHHHhcccCCCCcccHHHHHHHHHHHHHHHHhhccccchH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 008524 185 HLVKELKLRIKEVERAVGAATKDSDLSRRAFRRMNQMEATLDKASHVYPDCS-AMATKLRAMTYNAEERVRLQKNQAT 261 (563)
Q Consensus 185 ~~~~el~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~a~~~~~d~~-~~~~kl~~~~~~~e~~~~~~~~~~~ 261 (563)
.+..||.+-+.+++.++..+...+ ...+.+.-..++..+..+++..-|.. .+..+.+.....+|+.++.+--++.
T Consensus 2 ~l~~~l~~l~~d~~~l~~~~~~~~--~~~~~~~r~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~V~e~P~~sv 77 (94)
T PF05957_consen 2 DLKAELEQLRADLEDLARSAADLA--GEKADEARDRAEEALDDARDRAEDAADQAREQAREAAEQTEDYVRENPWQSV 77 (94)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHChHHHH
Confidence 355666666666766666553322 22333334444555555555444433 4678889999999999998877764
No 56
>PRK11204 N-glycosyltransferase; Provisional
Probab=26.49 E-value=6.1e+02 Score=27.14 Aligned_cols=112 Identities=12% Similarity=0.063 Sum_probs=59.1
Q ss_pred CCceeEEEEeCc-chhhHHHHHHHHhhcCCCCceEEEEEeCCCCHHH---HHHHHhhCCCCCceEEEEEccCCccchhhh
Q 008524 305 PDLHHYAVFSDN-VLACAVVVNSTVSFAKEPEKIVFHVVTDSLNLPA---ISMWFLLNPPGKATIQIQSIDNFNWLSTKY 380 (563)
Q Consensus 305 ~~~iHIv~~sDn-vLaasVvI~Siv~Ns~~p~~i~FHIltd~is~~~---mk~wf~~n~~~~a~Ie~i~i~~~~~l~~~~ 380 (563)
...+-|++.+-| .-...-++.|+.... .| ++.+.|+.|+-+.+. ++.+.. ..+ .++++..++ +.+.
T Consensus 53 ~p~vsViIp~yne~~~i~~~l~sl~~q~-yp-~~eiiVvdD~s~d~t~~~l~~~~~--~~~--~v~~i~~~~----n~Gk 122 (420)
T PRK11204 53 YPGVSILVPCYNEGENVEETISHLLALR-YP-NYEVIAINDGSSDNTGEILDRLAA--QIP--RLRVIHLAE----NQGK 122 (420)
T ss_pred CCCEEEEEecCCCHHHHHHHHHHHHhCC-CC-CeEEEEEECCCCccHHHHHHHHHH--hCC--cEEEEEcCC----CCCH
Confidence 335778887665 334667788887643 33 588888888755333 333321 112 344543221 0000
Q ss_pred hhhhhccCCCCCCCCchhhhhhhcccccccCCCeEEEEecceeeccC-hHHHhccCCCCCEEEEee
Q 008524 381 NATLKKENSHDPRYTSALNHLRFYLPDVFPALNKVLLFDHDVVVQSD-LGRLWNIDMKGKVIGAVD 445 (563)
Q Consensus 381 ~~vl~~l~s~~~~~iS~~~y~RL~LPeLLP~ldKVLYLD~DVIVq~D-LseLw~iDL~GkviaAV~ 445 (563)
....+. -+. ....+-++++|+|.++..| |..+.+.=.++.-+|+|.
T Consensus 123 --------------a~aln~---g~~--~a~~d~i~~lDaD~~~~~d~L~~l~~~~~~~~~v~~v~ 169 (420)
T PRK11204 123 --------------ANALNT---GAA--AARSEYLVCIDGDALLDPDAAAYMVEHFLHNPRVGAVT 169 (420)
T ss_pred --------------HHHHHH---HHH--HcCCCEEEEECCCCCCChhHHHHHHHHHHhCCCeEEEE
Confidence 000111 111 0246899999999999876 566655322333455554
No 57
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=26.01 E-value=3.9e+02 Score=25.06 Aligned_cols=33 Identities=15% Similarity=0.129 Sum_probs=22.2
Q ss_pred CcchhhHHHHHHHHhhcCCCCceEEEEEeCCCC
Q 008524 315 DNVLACAVVVNSTVSFAKEPEKIVFHVVTDSLN 347 (563)
Q Consensus 315 DnvLaasVvI~Siv~Ns~~p~~i~FHIltd~is 347 (563)
+..-.+.-+|.|+....-.+..+.+.|+.|+-+
T Consensus 7 n~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~ 39 (229)
T cd04192 7 NEAENLPRLLQSLSALDYPKEKFEVILVDDHST 39 (229)
T ss_pred CcHHHHHHHHHHHHhCCCCCCceEEEEEcCCCC
Confidence 333456778899887765433478888887644
No 58
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=22.93 E-value=5.3e+02 Score=23.81 Aligned_cols=97 Identities=13% Similarity=0.055 Sum_probs=51.0
Q ss_pred EEEEeCc-chhhHHHHHHHHhhcCCCCceEEEEEeCCCCH---HHHHHHHhhCCCCCceEEEEEccCCccchhhhhhhhh
Q 008524 310 YAVFSDN-VLACAVVVNSTVSFAKEPEKIVFHVVTDSLNL---PAISMWFLLNPPGKATIQIQSIDNFNWLSTKYNATLK 385 (563)
Q Consensus 310 Iv~~sDn-vLaasVvI~Siv~Ns~~p~~i~FHIltd~is~---~~mk~wf~~n~~~~a~Ie~i~i~~~~~l~~~~~~vl~ 385 (563)
|++.+=| .-.+.-+|.|++..... .+.+.|+.|+-+. +.++.+... .+..+.++.-+.
T Consensus 2 IvIp~yn~~~~l~~~l~sl~~q~~~--~~eiiVvddgS~d~t~~~~~~~~~~---~~~~~~~~~~~~------------- 63 (214)
T cd04196 2 VLMATYNGEKYLREQLDSILAQTYK--NDELIISDDGSTDGTVEIIKEYIDK---DPFIIILIRNGK------------- 63 (214)
T ss_pred EEEEecCcHHHHHHHHHHHHhCcCC--CeEEEEEeCCCCCCcHHHHHHHHhc---CCceEEEEeCCC-------------
Confidence 3444433 33467788899876532 5888888877543 333433211 112233322111
Q ss_pred ccCCCCCCCCchhhhhhhcccccccCCCeEEEEecceeeccC-hHHHhcc
Q 008524 386 KENSHDPRYTSALNHLRFYLPDVFPALNKVLLFDHDVVVQSD-LGRLWNI 434 (563)
Q Consensus 386 ~l~s~~~~~iS~~~y~RL~LPeLLP~ldKVLYLD~DVIVq~D-LseLw~i 434 (563)
+.......+.. + ...+-+-|++||+|.+...+ |..+++.
T Consensus 64 -----~~G~~~~~n~g-~----~~~~g~~v~~ld~Dd~~~~~~l~~~~~~ 103 (214)
T cd04196 64 -----NLGVARNFESL-L----QAADGDYVFFCDQDDIWLPDKLERLLKA 103 (214)
T ss_pred -----CccHHHHHHHH-H----HhCCCCEEEEECCCcccChhHHHHHHHH
Confidence 01111111111 1 12347889999988777655 8888886
No 59
>PLN02829 Probable galacturonosyltransferase
Probab=22.11 E-value=6.8e+02 Score=29.59 Aligned_cols=66 Identities=17% Similarity=0.220 Sum_probs=40.1
Q ss_pred CchHHHHHhhHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHHHhcccCCCCcccHHHHHHHHHHHH
Q 008524 156 VSDEKIKEMKDQVIRAQAYLNFAPPGSNSHLVKELKLRIKEVERAVGAATKDSDLSRRAFRRMNQMEA 223 (563)
Q Consensus 156 ~~d~~~~~~~dq~~~a~ay~~~a~~~~~~~~~~el~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~m~~ 223 (563)
+....++.||-+|-=..--++=|.. ...|-.+...+|+.++.+++++..-..=-..+..++++|=+
T Consensus 206 ~~~~l~~el~~~i~e~~r~l~~a~~--d~~lp~~~~~~~~~m~~~i~~ak~~~~d~~~~~~KLr~~l~ 271 (639)
T PLN02829 206 ANPHFTRELRLRIKEVQRVLGDASK--DSDLPKNANEKLKAMEQTLAKGKQMQDDCSIVVKKLRAMLH 271 (639)
T ss_pred CcHHHHHHHHHHHHHHHHHHhhccC--CCCCChhHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHH
Confidence 4456677777777555444443333 45566788889999999999885432222344555555543
No 60
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=20.71 E-value=2.8e+02 Score=28.42 Aligned_cols=111 Identities=9% Similarity=0.125 Sum_probs=68.8
Q ss_pred HHHHHHhhCCCCCCchHHHHHHHHHHHHHHHhcccCCCCcccHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHH
Q 008524 170 RAQAYLNFAPPGSNSHLVKELKLRIKEVERAVGAATKDSDLSRRAFRRMNQMEATLDKASHVYPDCSAMATKLRAMTYNA 249 (563)
Q Consensus 170 ~a~ay~~~a~~~~~~~~~~el~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~a~~~~~d~~~~~~kl~~~~~~~ 249 (563)
.++.+-.++...+..++..|++..+.++.. |-..-.+-=..+.+=+..||.+|..+++..-.....+.++..-+..+
T Consensus 17 k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~---Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~L 93 (230)
T PF10146_consen 17 KNEILQEVESLENEEKCLEEYRKEMEELLQ---ERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPL 93 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666777888887776555422 11111111234567778899999999998888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCcccchhhhhchHHHhc
Q 008524 250 EERVRLQKNQATYLVQLASRTTPKGLHCLSMQLTAEYFA 288 (563)
Q Consensus 250 e~~~~~~~~~~~~~~~la~~~~Pk~~hcL~~rLt~e~~~ 288 (563)
-+++...++.- ++-..+|-..-==...++.+||.
T Consensus 94 k~~in~~R~e~-----lgl~~Lp~l~eE~~~~~~~~~~~ 127 (230)
T PF10146_consen 94 KDEINELRKEY-----LGLEPLPSLEEEELSKISPDYLQ 127 (230)
T ss_pred HHHHHHHHHHH-----cCCCCCCccccccccccCHHHhh
Confidence 88888765542 44445554331112344555554
No 61
>PF03314 DUF273: Protein of unknown function, DUF273; InterPro: IPR004988 This is a family of proteins of unknown function.
Probab=20.69 E-value=53 Score=33.46 Aligned_cols=24 Identities=25% Similarity=0.484 Sum_probs=20.1
Q ss_pred cccccccCCCeEEEEecceeeccC
Q 008524 404 YLPDVFPALNKVLLFDHDVVVQSD 427 (563)
Q Consensus 404 ~LPeLLP~ldKVLYLD~DVIVq~D 427 (563)
.+..+||+.+-|++||+||-|...
T Consensus 34 vva~~L~~~~~vlflDaDigVvNp 57 (222)
T PF03314_consen 34 VVAKILPEYDWVLFLDADIGVVNP 57 (222)
T ss_pred HHHHHhccCCEEEEEcCCceeecC
Confidence 357788999999999999998743
Done!