Query 008524
Match_columns 563
No_of_seqs 287 out of 1165
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 05:34:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008524.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008524hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tzt_A Glycosyl transferase fa 100.0 1.2E-38 4.1E-43 322.3 15.8 211 307-541 5-218 (276)
2 1g9r_A Glycosyl transferase; a 100.0 5.1E-37 1.7E-41 314.1 17.8 209 308-541 1-212 (311)
3 1ll2_A Glycogenin-1; protein-s 99.8 1.1E-20 3.6E-25 196.2 16.1 183 306-541 3-192 (333)
4 3u2u_A Glycogenin-1, GN-1, GN1 99.8 2.5E-19 8.7E-24 180.7 15.1 178 310-540 8-192 (263)
5 1o7q_A N-acetyllactosaminide a 77.3 16 0.00056 37.1 11.1 201 308-539 50-261 (289)
6 3ioh_A Histo-blood group ABO s 64.2 58 0.002 33.2 11.8 200 308-539 60-270 (298)
7 2dl1_A Spartin; SPG20, MIT, st 57.0 20 0.00069 31.8 6.1 80 159-255 10-93 (116)
8 3v1a_A Computational design, M 56.3 12 0.00042 28.3 3.9 38 164-201 6-43 (48)
9 1yzm_A FYVE-finger-containing 44.5 18 0.00061 27.7 3.2 38 164-201 7-44 (51)
10 4ayl_A BOGT-metal-independent 42.4 2.7E+02 0.0091 27.6 14.3 194 313-539 9-215 (246)
11 1z0k_B FYVE-finger-containing 41.8 19 0.00066 29.1 3.2 39 163-201 24-62 (69)
12 1fo8_A Alpha-1,3-mannosyl-glyc 41.6 1E+02 0.0035 31.6 9.6 113 308-433 4-121 (343)
13 1z0j_B FYVE-finger-containing 39.2 25 0.00085 27.7 3.4 39 163-201 13-51 (59)
14 3umh_A Amyloid beta A4 protein 27.7 2.1E+02 0.0071 27.8 8.5 48 214-261 38-86 (211)
15 3k66_A Beta-amyloid-like prote 25.9 2.5E+02 0.0084 27.8 8.7 47 214-260 33-87 (239)
16 3pmr_A Amyloid-like protein 1; 25.1 2.8E+02 0.0097 27.0 8.9 46 215-260 46-92 (219)
17 4e61_A Protein BIM1; EB1-like 24.3 88 0.003 27.3 4.7 39 213-251 43-101 (106)
No 1
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0
Probab=100.00 E-value=1.2e-38 Score=322.30 Aligned_cols=211 Identities=13% Similarity=0.107 Sum_probs=154.5
Q ss_pred ceeEEEEeCcc-h-hhHHHHHHHHhhcCCCCceEEEEEeCCCCHHHHHHHHhhCCCCCceEEEEEccCCccchhhhhhhh
Q 008524 307 LHHYAVFSDNV-L-ACAVVVNSTVSFAKEPEKIVFHVVTDSLNLPAISMWFLLNPPGKATIQIQSIDNFNWLSTKYNATL 384 (563)
Q Consensus 307 ~iHIv~~sDnv-L-aasVvI~Siv~Ns~~p~~i~FHIltd~is~~~mk~wf~~n~~~~a~Ie~i~i~~~~~l~~~~~~vl 384 (563)
.||||+++|+. + +++|+|+|++.|+++ ++++|||++++++.+..+.+.......++.|+++.+++ .++.
T Consensus 5 ~i~I~~~~d~~Y~~~~~v~i~Sl~~~~~~-~~~~~~il~~~is~~~~~~L~~~~~~~~~~i~~~~~~~-~~~~------- 75 (276)
T 3tzt_A 5 ADALLLTLDENYIPQMKVLMTSIYINNPG-RIFDVYLIHSRISEDKLKDLGEDLKKFSYTLYPIRATD-DLFS------- 75 (276)
T ss_dssp CEEEEEECCGGGHHHHHHHHHHHHHHSTT-CCEEEEEEESCCCHHHHHHHHHHHHTTTCEEEEEECC-------------
T ss_pred eEEEEEEeCHhHHHHHHHHHHHHHHhCCC-CceEEEEEeCCCCHHHHHHHHHHHHHcCCEEEEEEeCH-HHHh-------
Confidence 48999999984 3 799999999999985 57999999999998776655544344578999998875 2222
Q ss_pred hccCCCCCCCCchhhhhhhcccccccC-CCeEEEEecceeeccChHHHhccCCCCCEEEEeecccchhhHHHhhhhccCC
Q 008524 385 KKENSHDPRYTSALNHLRFYLPDVFPA-LNKVLLFDHDVVVQSDLGRLWNIDMKGKVIGAVDTCKESEASFRRMDLFINF 463 (563)
Q Consensus 385 ~~l~s~~~~~iS~~~y~RL~LPeLLP~-ldKVLYLD~DVIVq~DLseLw~iDL~GkviaAV~Dc~~~~~~~~r~~~~Lnf 463 (563)
.. ....++|..+|+||++|++||+ ++||||||+|+||++||++||++|++|+++|||+||.... ..+....+
T Consensus 76 -~~--~~~~~~s~~~~~rl~~~~l~p~~~~kvlylD~D~iv~~di~~L~~~dl~~~~~aav~d~~~~~--~~~~~~~~-- 148 (276)
T 3tzt_A 76 -FA--KVTDRYPKEMYYRLLAGEFLPENLGEILYLDPDMLVINPLDDLLRTDISDYILAAASHTGKTD--MANNVNRI-- 148 (276)
T ss_dssp -----------CHHHHHHHTHHHHSCTTCCEEEEECSSEEECSCSHHHHTCCCTTSSEEEEEC-----------------
T ss_pred -cC--ccccccCHHHHHHHHHHHHcccccCeEEEEeCCeeecCCHHHHhhcCCCCCeEEEEEecccch--HHHHHHHh--
Confidence 11 1235789999999999999995 9999999999999999999999999999999999997521 11111111
Q ss_pred CChhhhhhCCCCCCceeehhhHccHHHHHhhcHHHHHHHHHHHcccccccCCChHHHHHHhhccceecCccccccccc
Q 008524 464 SDPLIAKKFDVKACTWAFGMNLFDLQEWRKRKLTAVYHKYLQLVCEYLRFCLNLHFLALLIASLCYLLEQYILVYHNI 541 (563)
Q Consensus 464 snP~i~~~f~~~~cYFNSGVlLiDLkkWRe~nitek~l~~l~~n~~~ll~~dDQDiLN~vf~g~v~~Ld~~rWN~~gl 541 (563)
.+++..||||||||||||++||+.++++++++|++++..++.++ |||+||.+|.|+|+.||+.+||++..
T Consensus 149 -------~l~~~~~yfNsGV~linl~~~R~~~~~~~~~~~~~~~~~~~~~~-DQd~LN~~f~~~~~~Lp~~~wN~~~~ 218 (276)
T 3tzt_A 149 -------RLGTDTDYYNSGLLLINLKRAREEIDPDEIFSFVEDNHMNLLLP-DQDILNAMYGDRIYPLDDLIYNYDAR 218 (276)
T ss_dssp --------------CEEEEEEEEEHHHHHHHCCHHHHHHHHHHC---------CHHHHHHHGGGEEEEEHHHHSEETT
T ss_pred -------cCCCCCCeEEeeEEEEEHHHHHhhhHHHHHHHHHHhccccccCC-ChhHHHHHHhCCEEECCchheeeecc
Confidence 23334599999999999999999999999999999998888888 79999999999999999526999853
No 2
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A*
Probab=100.00 E-value=5.1e-37 Score=314.09 Aligned_cols=209 Identities=16% Similarity=0.204 Sum_probs=170.7
Q ss_pred eeEEEEeCcc-h-hhHHHHHHH-HhhcCCCCceEEEEEeCCCCHHHHHHHHhhCCCCCceEEEEEccCCccchhhhhhhh
Q 008524 308 HHYAVFSDNV-L-ACAVVVNST-VSFAKEPEKIVFHVVTDSLNLPAISMWFLLNPPGKATIQIQSIDNFNWLSTKYNATL 384 (563)
Q Consensus 308 iHIv~~sDnv-L-aasVvI~Si-v~Ns~~p~~i~FHIltd~is~~~mk~wf~~n~~~~a~Ie~i~i~~~~~l~~~~~~vl 384 (563)
||||+++|+. + +++|+|+|+ +.|++ .+++|||++++++.+..+.+.......+..|+++.++.- ++
T Consensus 1 m~I~~~~d~~Y~~~~~vli~Sl~l~~~~--~~~~f~il~~~ls~~~~~~L~~~~~~~~~~i~~~~~~~~-~~-------- 69 (311)
T 1g9r_A 1 MDIVFAADDNYAAYLCVAAKSVEAAHPD--TEIRFHVLDAGISEANRAAVAANLRGGGGNIRFIDVNPE-DF-------- 69 (311)
T ss_dssp CEEEEEECGGGHHHHHHHHHHHHHTCTT--SCCEEEEEESSCCHHHHHHHHHHSGGGTTTEEEEECCGG-GG--------
T ss_pred CeEEEECCHhHHHHHHHHHHHHHHHcCC--CCceEEEEECCCCHHHHHHHHHHHHHcCCEEEEEEcCHH-HH--------
Confidence 7999999984 3 799999999 88874 469999999999987766655544444678899887641 11
Q ss_pred hccCCCCCCCCchhhhhhhcccccccCCCeEEEEecceeeccChHHHhccCCCCCEEEEeecccchhhHHHhhhhccCCC
Q 008524 385 KKENSHDPRYTSALNHLRFYLPDVFPALNKVLLFDHDVVVQSDLGRLWNIDMKGKVIGAVDTCKESEASFRRMDLFINFS 464 (563)
Q Consensus 385 ~~l~s~~~~~iS~~~y~RL~LPeLLP~ldKVLYLD~DVIVq~DLseLw~iDL~GkviaAV~Dc~~~~~~~~r~~~~Lnfs 464 (563)
++.. ....++|..+|+||++|++||+++||||||+|+||++||++||++||+|+++|||+||.... ...+...++
T Consensus 70 ~~~~-~~~~~~s~~~y~Rl~l~~ll~~~~kvlyLD~D~iv~~di~eL~~~~l~~~~~aav~d~~~~~--~~~~~~~~~-- 144 (311)
T 1g9r_A 70 AGFP-LNIRHISITTYARLKLGEYIADCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGASIDLFVER--QEGYKQKIG-- 144 (311)
T ss_dssp TTSC-CCCTTCCGGGGGGGGHHHHCCSCSCEEEECSSEEECSCCHHHHTCCCTTCSEEEEECHHHHT--STTHHHHTT--
T ss_pred hcCc-cccccCCHHHHHHHHHHHHhhhcCEEEEEcCCeEeccCHHHHhccCCCCcEEEEEeccchhh--hHHHHHhcC--
Confidence 1111 12468899999999999999999999999999999999999999999999999999986410 011222222
Q ss_pred ChhhhhhCCCCCCceeehhhHccHHHHHhhcHHHHHHHHHHHcccccccCCChHHHHHHhhccceecCccccccccc
Q 008524 465 DPLIAKKFDVKACTWAFGMNLFDLQEWRKRKLTAVYHKYLQLVCEYLRFCLNLHFLALLIASLCYLLEQYILVYHNI 541 (563)
Q Consensus 465 nP~i~~~f~~~~cYFNSGVlLiDLkkWRe~nitek~l~~l~~n~~~ll~~dDQDiLN~vf~g~v~~Ld~~rWN~~gl 541 (563)
+.+..|||||||||||+++||+.++++++++|++++.....++ |||+||.+|.|+|..||. +||++..
T Consensus 145 -------~~~~~~yfNsGv~linl~~~r~~~~~~~~~~~~~~~~~~~~~~-DQd~lN~~f~~~~~~Lp~-~wN~~~~ 212 (311)
T 1g9r_A 145 -------MADGEYYFNAGVLLINLKKWRRHDIFKMSSEWVEQYKDVMQYQ-DQDILNGLFKGGVCYANS-RFNFMPT 212 (311)
T ss_dssp -------CCTTSCCEEEEEEEECHHHHTTSCHHHHHHHHHHHHTTTCSSH-HHHHHHHHHTTSEEEECG-GGSBCHH
T ss_pred -------CCCCCceEeeeeeeeeHHHHHhcchHHHHHHHHHhccCcCccC-CcCHHHHHHcCCEEEcCh-hhccCcc
Confidence 2345789999999999999999999999999999988777888 699999999999999999 9999743
No 3
>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A*
Probab=99.84 E-value=1.1e-20 Score=196.22 Aligned_cols=183 Identities=11% Similarity=0.092 Sum_probs=128.5
Q ss_pred CceeEEEEeCc-ch-hhHHHHHHHHhhcCCCCceEEEEEeCCCCHHHHHHHHhhCCCCCceEEEEEccCCccchhhhhhh
Q 008524 306 DLHHYAVFSDN-VL-ACAVVVNSTVSFAKEPEKIVFHVVTDSLNLPAISMWFLLNPPGKATIQIQSIDNFNWLSTKYNAT 383 (563)
Q Consensus 306 ~~iHIv~~sDn-vL-aasVvI~Siv~Ns~~p~~i~FHIltd~is~~~mk~wf~~n~~~~a~Ie~i~i~~~~~l~~~~~~v 383 (563)
+...|++++|+ ++ ++.|++.|+..|++. ..++| +++++++.+..+.+.... .. ++.++.... ....-
T Consensus 3 ~~a~vt~~~d~~Yl~~a~vl~~SL~~~~s~-~~l~v-lv~~~is~~~~~~L~~~~----~~--v~~v~~l~~---~~~~~ 71 (333)
T 1ll2_A 3 DQAFVTLTTNDAYAKGALVLGSSLKQHRTS-RRLAV-LTTPQVSDTMRKALEIVF----DE--VITVDILDS---GDSAH 71 (333)
T ss_dssp SEEEEEEESSHHHHHHHHHHHHHHHHTTCC-SEEEE-EECTTSCHHHHHHHHHHC----SE--EEECCTTST---TSTTH
T ss_pred ceEEEEEEeCHHHHHHHHHHHHHHHHhCCC-CCEEE-EEcCCCCHHHHHHHHHhC----CE--EEEEeecCC---cchhh
Confidence 45788888887 44 688999999999764 34555 567788877766655432 23 344432211 00000
Q ss_pred hhccCCCCCCCCchhhhhhhcccccccCCCeEEEEecceeeccChHHHhccCCCCCEEEEeecccchhhHHHhhhhccCC
Q 008524 384 LKKENSHDPRYTSALNHLRFYLPDVFPALNKVLLFDHDVVVQSDLGRLWNIDMKGKVIGAVDTCKESEASFRRMDLFINF 463 (563)
Q Consensus 384 l~~l~s~~~~~iS~~~y~RL~LPeLLP~ldKVLYLD~DVIVq~DLseLw~iDL~GkviaAV~Dc~~~~~~~~r~~~~Lnf 463 (563)
+..+ . +.....+|+||++|++ ++++||||||+|+||.+||.+||+++ .+|||+|.+ |
T Consensus 72 ~~~~--~--~~~~~~t~~Kl~i~~l-~~ydrvlYLDaD~lv~~di~eLf~~~----~~aAv~d~~--------------~ 128 (333)
T 1ll2_A 72 LTLM--K--RPELGVTLTKLHCWSL-TQYSKCVFMDADTLVLANIDDLFERE----ELSAAPDPG--------------W 128 (333)
T ss_dssp HHHH--H--CGGGHHHHHHGGGGGC-TTCSEEEEECTTEEECSCCGGGGGSC----SSEEEECSS--------------S
T ss_pred cccc--c--ccchHHHHHHHHHhHh-cCCCeEEEEeCCEEeccCHHHHhCCC----ceeEEecCC--------------C
Confidence 0000 0 1124689999999995 78999999999999999999999987 478887742 1
Q ss_pred CChhhhhhCCCCCCceeehhhHccHHHHHhhcHHHHHHHHHHHcccccccCCChHHHHHHhhccc-----eecCcccccc
Q 008524 464 SDPLIAKKFDVKACTWAFGMNLFDLQEWRKRKLTAVYHKYLQLVCEYLRFCLNLHFLALLIASLC-----YLLEQYILVY 538 (563)
Q Consensus 464 snP~i~~~f~~~~cYFNSGVlLiDLkkWRe~nitek~l~~l~~n~~~ll~~dDQDiLN~vf~g~v-----~~Ld~~rWN~ 538 (563)
.+||||||||||++ ....+++++++..+. ...++ |||+||.+|.+.+ ..||. +||+
T Consensus 129 ------------~~~fNsGvmlin~~----~~~~~~l~~~~~~~~-~~~~~-DQ~~LN~~f~~~~~~~~~~~Lp~-~yN~ 189 (333)
T 1ll2_A 129 ------------PDCFNSGVFVYQPS----VETYNQLLHVASEQG-SFDGG-DQGLLNTFFNSWATTDIRKHLPF-IYNL 189 (333)
T ss_dssp ------------TTSEEEEEEEECCC----HHHHHHHHHHHHHTC-CTTSS-HHHHHHHHTTTTTTSCGGGBCCG-GGSE
T ss_pred ------------CcceeeeEEEEeCC----HHHHHHHHHHHHhcC-CCCCC-CHHHHHHHHHhhcccCccccCCc-HHhc
Confidence 25999999999774 234467777777654 45666 7999999998743 79999 9998
Q ss_pred ccc
Q 008524 539 HNI 541 (563)
Q Consensus 539 ~gl 541 (563)
+..
T Consensus 190 ~~~ 192 (333)
T 1ll2_A 190 SSI 192 (333)
T ss_dssp ETT
T ss_pred ccc
Confidence 753
No 4
>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} SCOP: c.68.1.14 PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A
Probab=99.80 E-value=2.5e-19 Score=180.69 Aligned_cols=178 Identities=10% Similarity=0.063 Sum_probs=125.5
Q ss_pred EEEEeCc-ch-hhHHHHHHHHhhcCCCCceEEEEEeCCCCHHHHHHHHhhCCCCCceEEEEEccCCccchhhhhhhhhcc
Q 008524 310 YAVFSDN-VL-ACAVVVNSTVSFAKEPEKIVFHVVTDSLNLPAISMWFLLNPPGKATIQIQSIDNFNWLSTKYNATLKKE 387 (563)
Q Consensus 310 Iv~~sDn-vL-aasVvI~Siv~Ns~~p~~i~FHIltd~is~~~mk~wf~~n~~~~a~Ie~i~i~~~~~l~~~~~~vl~~l 387 (563)
+.+++|+ ++ ++.|++.|+..+++. ..+++ +++++++.+..+.+... + .+++.++....-. .. -++.+
T Consensus 8 vTl~td~~Yl~ga~vL~~SL~~~~s~-~~lvv-Lvt~~vs~~~~~~L~~~----~--~~vi~V~~l~~~~-~~--~~~~~ 76 (263)
T 3u2u_A 8 VTLTTNDAYAKGALVLGSSLKQHRTT-RRLVV-LATPQVSDSMRKVLETV----F--DEVIMVDVLDSGD-SA--HLTLM 76 (263)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHTTCC-SEEEE-EECTTSCHHHHHHHHHH----S--SEEEECCCCCCCC-HH--HHHHT
T ss_pred EEEEECHHHHHHHHHHHHHHHHhCCC-CCEEE-EecCCCCHHHHHHHHHc----C--CeEEEeeecCCcc-hh--hhhhh
Confidence 4456666 44 689999999998764 23333 55677888776665433 2 2344444322111 00 01111
Q ss_pred CCCCCCCCchhhhhhhcccccccCCCeEEEEecceeeccChHHHhccCCCCCEEEEeecccchhhHHHhhhhccCCCChh
Q 008524 388 NSHDPRYTSALNHLRFYLPDVFPALNKVLLFDHDVVVQSDLGRLWNIDMKGKVIGAVDTCKESEASFRRMDLFINFSDPL 467 (563)
Q Consensus 388 ~s~~~~~iS~~~y~RL~LPeLLP~ldKVLYLD~DVIVq~DLseLw~iDL~GkviaAV~Dc~~~~~~~~r~~~~LnfsnP~ 467 (563)
.++ .+ ..+|.|++++++.+ ++||||||+|++|.+||.+||+++ .+|||+|.+-
T Consensus 77 --~rp-~~-~~~~~kl~~~~l~~-~~~vlylD~D~~v~~~~~~Lf~~~----~~aA~~d~~~------------------ 129 (263)
T 3u2u_A 77 --KRP-EL-GVTLTKLHCWSLTQ-YSKCVFMDADTLVLANIDDLFDRE----ELSAAPDPGW------------------ 129 (263)
T ss_dssp --TCT-TG-GGGGGGGGGGGCTT-CSEEEEECTTEEECSCCGGGGGSC----SSEEEECTTS------------------
T ss_pred --cCc-ch-hHHhHHHHhccccC-cceEEEEcCCEeeccCHHHHhCCC----cceEeccCCC------------------
Confidence 112 22 47899999999764 899999999999999999999987 4788887421
Q ss_pred hhhhCCCCCCceeehhhHccHHHHHhhcHHHHHHHHHHHcccccccCCChHHHHHHhhc-----cceecCcccccccc
Q 008524 468 IAKKFDVKACTWAFGMNLFDLQEWRKRKLTAVYHKYLQLVCEYLRFCLNLHFLALLIAS-----LCYLLEQYILVYHN 540 (563)
Q Consensus 468 i~~~f~~~~cYFNSGVlLiDLkkWRe~nitek~l~~l~~n~~~ll~~dDQDiLN~vf~g-----~v~~Ld~~rWN~~g 540 (563)
.+||||||||||++ .++.+++++++..+. ...++ |||+||.+|.+ .++.||. +||++.
T Consensus 130 --------~~~fNsGv~li~p~----~~~~~~l~~~~~~~~-~~~~~-DQd~LN~~f~~w~~~~~~~~Lp~-~yN~~~ 192 (263)
T 3u2u_A 130 --------PDCFNSGVFVYQPS----VETYNQLLHLASEQG-SFDGG-DQGILNTFFSSWATTDIRKHLPF-IYNLSS 192 (263)
T ss_dssp --------TTSEEEEEEEECCC----HHHHHHHHHHHHHHC-CTTSS-HHHHHHHHTTTTTTSCGGGBCCG-GGSEEH
T ss_pred --------CccccCeEEEEccc----HHHHHHHHHHHHhcC-CCCcc-cHHHHHHHhccccccCeeEeCCc-cccccc
Confidence 24999999999985 467788888887654 45667 79999999998 7899998 999963
No 5
>1o7q_A N-acetyllactosaminide alpha-1,3- galactosyltransferase; 3-galactosyltransferase-UDP complex, glycosyltransferase, glycoprotein, transmembrane; HET: GAL NAG UDP; 1.3A {Bos taurus} SCOP: c.68.1.9 PDB: 1gwv_A* 1gx0_A* 1gww_A* 1k4v_A* 1gx4_A* 2jco_A 1g8o_A* 1fg5_N* 1g93_A* 2wgz_A* 1o7o_A* 2vs4_A* 2jck_A* 2jcl_A 2vfz_A* 2vs3_A* 1vzu_A* 1vzx_A* 1vzt_A* 2jcj_A* ...
Probab=77.25 E-value=16 Score=37.10 Aligned_cols=201 Identities=10% Similarity=0.081 Sum_probs=110.8
Q ss_pred eeEEEEe-Ccch--hhHHHHHHHHhhcCCCCceEEEEEeCCCCHHHHHHHHhhCCCCCceEEEEEccCCc-cchhhhhhh
Q 008524 308 HHYAVFS-DNVL--ACAVVVNSTVSFAKEPEKIVFHVVTDSLNLPAISMWFLLNPPGKATIQIQSIDNFN-WLSTKYNAT 383 (563)
Q Consensus 308 iHIv~~s-DnvL--aasVvI~Siv~Ns~~p~~i~FHIltd~is~~~mk~wf~~n~~~~a~Ie~i~i~~~~-~l~~~~~~v 383 (563)
|-+.+++ -.+. -.---+.|.=++=-...++++||+||..+. + -...-.++.++.+..+.... |-. . .
T Consensus 50 IGl~vfa~GkY~~~fl~~Fl~SAEk~Fm~g~~v~YYVFTD~~~~--~---p~v~l~~~r~~~V~~i~~~~~W~d--~--s 120 (289)
T 1o7q_A 50 VGLTVFAVGRYIEHYLEEFLTSANKHFMVGHPVIFYIMVDDVSR--M---PLIELGPLRSFKVFKIKPEKRWQD--I--S 120 (289)
T ss_dssp EEEEEEECTTHHHHHHHHHHHHHHHHBSTTSCEEEEEEESCGGG--C---CCCCCCTTEEEEEEECCCCSSHHH--H--H
T ss_pred EEEEEEEecccHHHHHHHHHHHHHHhccCCCeEEEEEEeCChhh--C---CccccCCCCeEEEEEeccccCCch--h--H
Confidence 4444444 3332 345667777776555567999999997531 0 01112345667887776433 311 0 0
Q ss_pred hhccCCCCCCCCchhhhhhhcccccccCCCeEEEEecceeeccChHHHhccCCCCCEEEEeecccchhhHHHhhhhccCC
Q 008524 384 LKKENSHDPRYTSALNHLRFYLPDVFPALNKVLLFDHDVVVQSDLGRLWNIDMKGKVIGAVDTCKESEASFRRMDLFINF 463 (563)
Q Consensus 384 l~~l~s~~~~~iS~~~y~RL~LPeLLP~ldKVLYLD~DVIVq~DLseLw~iDL~GkviaAV~Dc~~~~~~~~r~~~~Lnf 463 (563)
+ ..+.++.++-.-+++-++|-+.++|+|+++++++..= .| |..+|...--.-..++ ..+ .| =
T Consensus 121 m----------~Rm~~i~~~~~~~~~~evDYLf~~dvd~~F~~~vG~E---~L-g~lv~~lHp~~y~~~~-~~f-pY--E 182 (289)
T 1o7q_A 121 M----------MRMKTIGEHIVAHIQHEVDFLFCMDVDQVFQDKFGVE---TL-GESVAQLQAWWYKADP-NDF-TY--E 182 (289)
T ss_dssp H----------HHHHHHHHHHHHTHHHHCSEEEEECSSEEECSCBCGG---GC-SSEEEEECTTTTTSCG-GGS-CC--C
T ss_pred H----------HHHHHHHHHHHHHHhhcCCEEEEeeCCcEeeccCCHH---HH-HHHHHccCHHHhCCCC-CCC-CC--C
Confidence 1 1133444444466677899999999999999987541 22 5667665432111000 000 00 0
Q ss_pred CChhhhh--hCCCCCCceeehhhHccHHHHHhhcHHHHHHHHHHH---cccccccCCChHHHHHHh--hccceecCcccc
Q 008524 464 SDPLIAK--KFDVKACTWAFGMNLFDLQEWRKRKLTAVYHKYLQL---VCEYLRFCLNLHFLALLI--ASLCYLLEQYIL 536 (563)
Q Consensus 464 snP~i~~--~f~~~~cYFNSGVlLiDLkkWRe~nitek~l~~l~~---n~~~ll~~dDQDiLN~vf--~g~v~~Ld~~rW 536 (563)
.+|.-.. .++.+..|+.+|++==-.++-- ++++.|+.-+.. |.=...|+ |.-.||-.| +.-.+.|++ +|
T Consensus 183 Rrp~S~AyIp~~eGdfYY~Ga~fGGt~~~vl--~l~~~c~~~i~~D~~n~I~A~wH-DESHLNKYf~~~KPtKvLSP-EY 258 (289)
T 1o7q_A 183 RRKESAAYIPFGEGDFYYHAAIFGGTPTQVL--NITQECFKGILKDKKNDIEAQWH-DESHLNKYFLLNKPTKILSP-EY 258 (289)
T ss_dssp CCTTSTTCCCTTCCSCCEEEEEEEECHHHHH--HHHHHHHHHHHHHHHTTCCCTTT-HHHHHHHHHHHSCCSEEECG-GG
T ss_pred CCcCceeeecCCCCCEEEEceeeCCcHHHHH--HHHHHHHHHHHHHHhCCeEEEec-chhhhhHHHhhcCCCEEECH-HH
Confidence 1221111 2455788998888733333322 245566655433 33355888 689999985 334577999 77
Q ss_pred ccc
Q 008524 537 VYH 539 (563)
Q Consensus 537 N~~ 539 (563)
+..
T Consensus 259 ~wd 261 (289)
T 1o7q_A 259 CWD 261 (289)
T ss_dssp SBC
T ss_pred CCC
Confidence 664
No 6
>3ioh_A Histo-blood group ABO system transferase; GTA, cisab mutant, AA(Gly)B, rossman fold, unliganded, conformation, blood group antigen, glycoprotein; HET: GOL; 1.25A {Homo sapiens} SCOP: c.68.1.9 PDB: 3ioi_A* 3ioj_A* 3u0y_A* 3u0x_A* 1zhj_A* 2o1h_A* 2o1g_A* 3sx5_A* 3sx3_A* 2o1f_A 2rj6_A* 2rj5_A* 2rj7_A* 1zi4_A* 2y7a_A* 3sxb_A* 3sxa_A* 2riz_A 2rj0_A* 2rj1_A* ...
Probab=64.18 E-value=58 Score=33.21 Aligned_cols=200 Identities=10% Similarity=0.127 Sum_probs=103.6
Q ss_pred eeEEEEe-Ccch-hhHHHHHHHHhhcCCCCceEEEEEeCCCCHHHHHHHHhhCCCCCceEEEEEccCC-ccchhhhhhhh
Q 008524 308 HHYAVFS-DNVL-ACAVVVNSTVSFAKEPEKIVFHVVTDSLNLPAISMWFLLNPPGKATIQIQSIDNF-NWLSTKYNATL 384 (563)
Q Consensus 308 iHIv~~s-DnvL-aasVvI~Siv~Ns~~p~~i~FHIltd~is~~~mk~wf~~n~~~~a~Ie~i~i~~~-~~l~~~~~~vl 384 (563)
|-+++++ -.+. .+---+.|.=++=-...++++||+||..+. +- .....++.++.++.+... .|-.-+ +
T Consensus 60 IGl~vfA~GkY~~fl~~Fl~SAek~Fm~g~~V~YYVFTD~~~~--vP---~v~l~~~r~~~V~~v~~~~~Wqd~s----m 130 (298)
T 3ioh_A 60 IGLTVFAIKKYVAFLKLFLETAEKHFMVGHRVHYYVFTDQPAA--VP---RVTLGTGRQLSVLEVRAYKRWQDVS----M 130 (298)
T ss_dssp EEEEEEECGGGGGGHHHHHHHHHHHBSTTSEEEEEEEESCGGG--SC---CCCCCTTEEEEEEECCCCSSHHHHH----H
T ss_pred EEEEEEEeCcHHHHHHHHHHhHHHhccCCceEEEEEEeCChhh--CC---ccccCCCCeEEEEEeccccCCcccc----H
Confidence 4444444 3333 355677777777666678999999997431 10 112234667777776543 232100 1
Q ss_pred hccCCCCCCCCchhhhhhhcccccccCCCeEEEEecceeeccChHHHhccCCCCCEEEEeecccchhhHHHhhhhccCC-
Q 008524 385 KKENSHDPRYTSALNHLRFYLPDVFPALNKVLLFDHDVVVQSDLGRLWNIDMKGKVIGAVDTCKESEASFRRMDLFINF- 463 (563)
Q Consensus 385 ~~l~s~~~~~iS~~~y~RL~LPeLLP~ldKVLYLD~DVIVq~DLseLw~iDL~GkviaAV~Dc~~~~~~~~r~~~~Lnf- 463 (563)
..+.++..+-.-.++-++|-+.++|+|+++++++.. ..=|..+|... .+- |++-+..+-+
T Consensus 131 ----------~Rm~~i~~~~~~~~~~EvDyLfc~dvd~~F~~~vG~----E~Lg~lva~lH-p~~----y~~~~~~FpYE 191 (298)
T 3ioh_A 131 ----------RRMEMISDFCERRFLSEVDYLVCVDVDMEFRDHVGV----EILTPLFGTLH-PGF----YGSSREAFTYE 191 (298)
T ss_dssp ----------HHHHHHHHHHHHTHHHHCSEEEEEESSEEECSCBCG----GGCSSEEEEBC-TTT----TTSCGGGSCCC
T ss_pred ----------HHHHHHHHHHHHHHhhcCCEEEEecCCCeeccCccH----HHhHhhHhhcC-hhh----hcCCcccCccc
Confidence 012333333344567789999999999999998653 11134555443 211 0000000000
Q ss_pred CChhhhh--hCCCCCCceeehhhHccHHHHHhhcHHHHHHHHHHH---cccccccCCChHHHHHHhh-cc-ceecCcccc
Q 008524 464 SDPLIAK--KFDVKACTWAFGMNLFDLQEWRKRKLTAVYHKYLQL---VCEYLRFCLNLHFLALLIA-SL-CYLLEQYIL 536 (563)
Q Consensus 464 snP~i~~--~f~~~~cYFNSGVlLiDLkkWRe~nitek~l~~l~~---n~~~ll~~dDQDiLN~vf~-g~-v~~Ld~~rW 536 (563)
.+|.-.. .++.+..|+.+|++==-..+- .++++.|+.-+.. |.=...|+ |.-.||-.|- ++ .+.|++ +|
T Consensus 192 Rrp~S~AyIp~~eGdfYY~ga~fGGt~~~v--l~Lt~~C~~~i~~D~~n~IeA~Wh-DESHLNKYfl~hKPtKvLSP-EY 267 (298)
T 3ioh_A 192 RRPQSQAYIPKDEGDFYYGGAFFGGSVQEV--QRLTRACHQAMMVDQANGIEAVWH-DESHLNKYLLRHKPTKVLSP-EY 267 (298)
T ss_dssp CCTTSTTCCCTTCCSCCBCTTEEEEEHHHH--HHHHHHHHHHHHHHHHTTCCCTTT-HHHHHHHHHHHSCCSEEECG-GG
T ss_pred CCccccccccCCCCCeEEeeeecCCcHHHH--HHHHHHHHHHHHHHHhCCceEecc-chhhhhhhhhhcCCCceeCH-HH
Confidence 1121111 133455666666651111111 1244455554432 34456888 5889998874 33 477988 77
Q ss_pred ccc
Q 008524 537 VYH 539 (563)
Q Consensus 537 N~~ 539 (563)
+..
T Consensus 268 ~Wd 270 (298)
T 3ioh_A 268 LWD 270 (298)
T ss_dssp SBC
T ss_pred cCC
Confidence 764
No 7
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=57.04 E-value=20 Score=31.76 Aligned_cols=80 Identities=16% Similarity=0.255 Sum_probs=51.0
Q ss_pred HHHHHhhHHHHHHHHHHhhCCC---CCCchHHHHHHHH-HHHHHHHhcccCCCCcccHHHHHHHHHHHHHHHHhhccccc
Q 008524 159 EKIKEMKDQVIRAQAYLNFAPP---GSNSHLVKELKLR-IKEVERAVGAATKDSDLSRRAFRRMNQMEATLDKASHVYPD 234 (563)
Q Consensus 159 ~~~~~~~dq~~~a~ay~~~a~~---~~~~~~~~el~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~a~~~~~d 234 (563)
+.++.+|+.=-.|-.|++-|=. .++-+.+.+|.++ |+|+++.|+--..+.+-....-+.
T Consensus 10 ~~l~~ik~~h~~AF~~Is~AL~~DE~g~k~~Al~lYk~GI~eLe~Gl~I~~~~~~~~g~~we~----------------- 72 (116)
T 2dl1_A 10 AEIKIIREAYKKAFLFVNKGLNTDELGQKEEAKNYYKQGIGHLLRGISISSKESEHTGPGWES----------------- 72 (116)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSCCCCTTCCCSHHHH-----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHH-----------------
Confidence 5677888888888888743322 3888899999887 999999888554432222211111
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 008524 235 CSAMATKLRAMTYNAEERVRL 255 (563)
Q Consensus 235 ~~~~~~kl~~~~~~~e~~~~~ 255 (563)
...|..||+..+.++.+++..
T Consensus 73 Ar~lq~KM~~nL~~v~~RL~~ 93 (116)
T 2dl1_A 73 ARQMQQKMKETLQNVRTRLEI 93 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 123445666666667776663
No 8
>3v1a_A Computational design, MID1-APO1; helix-turn-helix, metal binding, homodimer, de novo protein, binding protein; 0.98A {Artificial gene} PDB: 3v1b_A* 3v1c_A* 3v1d_A* 3v1f_A* 3v1e_A
Probab=56.33 E-value=12 Score=28.25 Aligned_cols=38 Identities=11% Similarity=0.249 Sum_probs=33.4
Q ss_pred hhHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHHHh
Q 008524 164 MKDQVIRAQAYLNFAPPGSNSHLVKELKLRIKEVERAV 201 (563)
Q Consensus 164 ~~dq~~~a~ay~~~a~~~~~~~~~~el~~~~~e~~~~~ 201 (563)
|..|+++.+.|+.-|+..+.-.=+.=|.++++|+++-+
T Consensus 6 L~EQ~~~I~~~I~qAk~~rRfdEV~~L~~NL~EL~~E~ 43 (48)
T 3v1a_A 6 LAQQIKNIHSFIHQAKAAGRMDEVRTLQENLHQLMHEY 43 (48)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 78999999999988999999888888999999987643
No 9
>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} SCOP: a.2.19.1
Probab=44.49 E-value=18 Score=27.69 Aligned_cols=38 Identities=11% Similarity=0.258 Sum_probs=32.9
Q ss_pred hhHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHHHh
Q 008524 164 MKDQVIRAQAYLNFAPPGSNSHLVKELKLRIKEVERAV 201 (563)
Q Consensus 164 ~~dq~~~a~ay~~~a~~~~~~~~~~el~~~~~e~~~~~ 201 (563)
|..|+++.++|..-|+..+.-.=+.=|..+++|+++-+
T Consensus 7 L~EQ~~~I~~~I~qAk~~~r~DEV~~Le~NLrEL~~ei 44 (51)
T 1yzm_A 7 LLQQIHNITSFIRQAKAAGRMDEVRTLQENLRQLQDEY 44 (51)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 78899999999988999999888888888888887643
No 10
>4ayl_A BOGT-metal-independent glycosyltransferase; histo-blood group enzyme; HET: EPE; 1.92A {Bacteroides ovatus} PDB: 4ayj_A*
Probab=42.41 E-value=2.7e+02 Score=27.63 Aligned_cols=194 Identities=14% Similarity=0.125 Sum_probs=95.9
Q ss_pred EeCcch-hhHHHHHHHHhhcCCCCc--eEEEEEeCCCCHHHHHHHHhhCCCCCceEEEEEccCCccchhhhhhhhhccCC
Q 008524 313 FSDNVL-ACAVVVNSTVSFAKEPEK--IVFHVVTDSLNLPAISMWFLLNPPGKATIQIQSIDNFNWLSTKYNATLKKENS 389 (563)
Q Consensus 313 ~sDnvL-aasVvI~Siv~Ns~~p~~--i~FHIltd~is~~~mk~wf~~n~~~~a~Ie~i~i~~~~~l~~~~~~vl~~l~s 389 (563)
|+-.+. .+---+.|.=++=-...+ ++++|+||....-. ..+.. .+.++.-+.-.|-..+ +
T Consensus 9 A~GkY~~fl~~Fl~SAek~Fm~g~~~~V~yYVFTD~~~~vp------~~~~~--~v~~~~~~~~~Wqd~s----m----- 71 (246)
T 4ayl_A 9 CTGKYDIFWKDFYLSAERYFMQDQSFIIEYYVFTDSPKLYD------EENNK--HIHRIKQKNLGWPDNT----L----- 71 (246)
T ss_dssp CCGGGGGGHHHHHHHHHHHBSCSTTSEEEEEEEESCSCCTT------TTTCT--TEEEEECCCCCTTHHH----H-----
T ss_pred EeCcHHHHHHHHHHhHHHhccCCCccceEEEEEeCChhhCC------cCCCc--eEEEEeCCcCCCcccc----h-----
Confidence 333443 355677788777766678 99999999754210 01112 2433322323353211 1
Q ss_pred CCCCCCchhhhhhhcccccccCCCeEEEEecceeeccChHHHhccCC-CCCEEEEeecccchhh----HHHhhhhccCCC
Q 008524 390 HDPRYTSALNHLRFYLPDVFPALNKVLLFDHDVVVQSDLGRLWNIDM-KGKVIGAVDTCKESEA----SFRRMDLFINFS 464 (563)
Q Consensus 390 ~~~~~iS~~~y~RL~LPeLLP~ldKVLYLD~DVIVq~DLseLw~iDL-~GkviaAV~Dc~~~~~----~~~r~~~~Lnfs 464 (563)
..+.++... ...+.-++|=+..+|+|+++++++..=-=+.. +|..+|...--.-..+ .|.|-.. |
T Consensus 72 -----~Rm~~i~~~-~~~~~~evDyLf~~dvd~~F~~~vG~E~L~p~~~~~lva~lHp~~y~~~~~~fpYERrp~----S 141 (246)
T 4ayl_A 72 -----KRFHIFLRI-KEQLERETDYLFFFNANLLFTSPIGKEILPPSDSNGLLGTMHPGFYNKPNSEFTYERRDA----S 141 (246)
T ss_dssp -----THHHHHHTT-HHHHHHHCSEEEEECTTEEECSCBCGGGSCCTTSCCEEEEBCGGGC-------------------
T ss_pred -----HHHHHHHHH-HHHHHhhCCEEEEEeCCceeeccCCHHHcccCCCCCEEEEechhhhCCCcccCcccCCcc----c
Confidence 113334444 44445559999999999999998864110122 2445655432111000 1111100 1
Q ss_pred ChhhhhhCCCCCCceeehhhHccHHHHHhhcHHHHHHHHHHH---cccccccCCChHHHHHHhh-cccee-cCccccccc
Q 008524 465 DPLIAKKFDVKACTWAFGMNLFDLQEWRKRKLTAVYHKYLQL---VCEYLRFCLNLHFLALLIA-SLCYL-LEQYILVYH 539 (563)
Q Consensus 465 nP~i~~~f~~~~cYFNSGVlLiDLkkWRe~nitek~l~~l~~---n~~~ll~~dDQDiLN~vf~-g~v~~-Ld~~rWN~~ 539 (563)
...| .++.+..|+.+|++==-..+. .++++.|+..+.. |.=...|+ |.--||-.|- ++-.. |++ .|+..
T Consensus 142 ~AyI--p~~eGdfYY~ga~fGG~~~~v--l~Lt~~c~~~i~~D~~n~I~A~wh-DESHLNKYfl~~KP~~vLSP-EY~wd 215 (246)
T 4ayl_A 142 TAYI--PEGEGRYYYAGGLSGGCTKAY--LKLCTTICSWVDRDATNHIIPIWH-DESLINKYFLDNPPAITLSP-AYLYP 215 (246)
T ss_dssp -----------CCCBCSSEEEEEHHHH--HHHHHHHHHHHHHHHTTCSSCSCC-HHHHHHHHHHHSCCSEEECG-GGGEE
T ss_pred cccc--cCCCCCeEEeeeecCCcHHHH--HHHHHHHHHHHHHHHhCCceEecc-chhHhHHHHHhCCCCeeeCH-HHcCC
Confidence 1111 123345566665552111111 2345566665543 33356888 6889998864 55555 888 77764
No 11
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=41.84 E-value=19 Score=29.14 Aligned_cols=39 Identities=10% Similarity=0.247 Sum_probs=34.0
Q ss_pred HhhHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHHHh
Q 008524 163 EMKDQVIRAQAYLNFAPPGSNSHLVKELKLRIKEVERAV 201 (563)
Q Consensus 163 ~~~dq~~~a~ay~~~a~~~~~~~~~~el~~~~~e~~~~~ 201 (563)
=|.+|+++.+.|..-|+..+...=+.=|..+++|+++-+
T Consensus 24 PL~EQ~~~I~~yI~qAk~~~r~DEV~tLe~NLrEL~~ei 62 (69)
T 1z0k_B 24 PLLQQIHNITSFIRQAKAAGRMDEVRTLQENLRQLQDEY 62 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 378999999999988999999888888999999988744
No 12
>1fo8_A Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetylglucosaminyltransferase; methylmercury derivative, N- acetylglucosaminyltransferase I; 1.40A {Oryctolagus cuniculus} SCOP: c.68.1.10 PDB: 1fo9_A 1foa_A* 2apc_A* 2am3_A* 2am4_A* 2am5_A*
Probab=41.55 E-value=1e+02 Score=31.62 Aligned_cols=113 Identities=12% Similarity=0.165 Sum_probs=62.0
Q ss_pred eeEEEEeCcchhhHHHHHHHHhhcCCCCceEEEEEeCCCCHHHHHHHHhhCCCCCceEEEEEccCCccchhhhhhhhhcc
Q 008524 308 HHYAVFSDNVLACAVVVNSTVSFAKEPEKIVFHVVTDSLNLPAISMWFLLNPPGKATIQIQSIDNFNWLSTKYNATLKKE 387 (563)
Q Consensus 308 iHIv~~sDnvLaasVvI~Siv~Ns~~p~~i~FHIltd~is~~~mk~wf~~n~~~~a~Ie~i~i~~~~~l~~~~~~vl~~l 387 (563)
+.|++.+=|-..+.-++.|+.++........+.|..|+-..+..+... .+. ..|..+--.+..... .
T Consensus 4 ~pViI~~yNRp~l~~~L~sL~~~~p~~~~~~iivsdDgs~~~~~~vi~---~~~-~~I~~~~~~d~~~~~-----~---- 70 (343)
T 1fo8_A 4 IPILVIACDRSTVRRCLDKLLHYRPSAELFPIIVSQDCGHEETAQVIA---SYG-SAVTHIRQPDLSNIA-----V---- 70 (343)
T ss_dssp CCEEEEESSCTTHHHHHHHHHHHCSCTTTSCEEEEECTTCHHHHHHHH---TTG-GGSEEEECSCCCCCC-----C----
T ss_pred ccEEEEECCcHHHHHHHHHHHhcCCCcCCcEEEEEECCCCHHHHHHHH---HcC-CceEEEEcCCccccc-----c----
Confidence 456665544223888999999986433345555666665544333221 111 122222111110000 0
Q ss_pred CCCCC---CCCchhhhhhhccccccc--CCCeEEEEecceeeccChHHHhc
Q 008524 388 NSHDP---RYTSALNHLRFYLPDVFP--ALNKVLLFDHDVVVQSDLGRLWN 433 (563)
Q Consensus 388 ~s~~~---~~iS~~~y~RL~LPeLLP--~ldKVLYLD~DVIVq~DLseLw~ 433 (563)
...+. .|...+.+++--+-.+|. ..++||+||+|+++--|.=+-++
T Consensus 71 ~~~N~g~~~y~~ia~h~~~al~~vf~~~~~~~vIiLEDDl~~spdF~~y~~ 121 (343)
T 1fo8_A 71 QPDHRKFQGYYKIARHYRWALGQIFHNFNYPAAVVVEDDLEVAPDFFEYFQ 121 (343)
T ss_dssp CTTCGGGHHHHHHHHHHHHHHHHHHTTSCCSEEEEEETTEEECTTHHHHHH
T ss_pred chhhcCcccchhHhHHHHHHHHHHHHhccCCEEEEEcCCCeECHHHHHHHH
Confidence 00111 134456777777888887 58999999999999988654443
No 13
>1z0j_B FYVE-finger-containing RAB5 effector protein RABE, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Homo sapiens} SCOP: a.2.19.1
Probab=39.18 E-value=25 Score=27.68 Aligned_cols=39 Identities=18% Similarity=0.193 Sum_probs=33.7
Q ss_pred HhhHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHHHh
Q 008524 163 EMKDQVIRAQAYLNFAPPGSNSHLVKELKLRIKEVERAV 201 (563)
Q Consensus 163 ~~~dq~~~a~ay~~~a~~~~~~~~~~el~~~~~e~~~~~ 201 (563)
-|..|+++.++|..-|+..+...=+.=|..+++|++.-+
T Consensus 13 pL~EQi~~I~~yI~qAk~~~R~DEV~~Le~NLrEL~~ei 51 (59)
T 1z0j_B 13 LLLQQIDNIKAYIFDAKQCGRLDEVEVLTENLRELKHTL 51 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Confidence 478999999999988999999888888888888887744
No 14
>3umh_A Amyloid beta A4 protein; metal binding site, metal binding, cell surface, secretory P metal binding protein; 2.00A {Homo sapiens} SCOP: a.47.4.1 PDB: 3umi_A 3umk_A 1rw6_A 3nyl_A 3nyj_A 1tkn_A
Probab=27.67 E-value=2.1e+02 Score=27.77 Aligned_cols=48 Identities=15% Similarity=0.143 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008524 214 AFRRMNQMEATLDKASHVY-PDCSAMATKLRAMTYNAEERVRLQKNQAT 261 (563)
Q Consensus 214 ~~~~~~~m~~~~~~a~~~~-~d~~~~~~kl~~~~~~~e~~~~~~~~~~~ 261 (563)
..+.|++-+.+-.+++... .|=++|.....+++.++|+++...++|-.
T Consensus 38 ~~~VmkEW~eae~q~k~l~kadkk~~~~rFQ~~v~aLE~E~~~ErqqL~ 86 (211)
T 3umh_A 38 MSQVMREWEEAERQAKNLPKADKKAVIQHFQEKVESLEQEAANERQQLV 86 (211)
T ss_dssp HHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 3455666666666666554 46678999999999999999998777643
No 15
>3k66_A Beta-amyloid-like protein; X-RAY amyloid precursor protein, heparin binding, alternative splicing, developmental protein, differentiation; 2.70A {Caenorhabditis elegans} PDB: 3k6b_A*
Probab=25.86 E-value=2.5e+02 Score=27.75 Aligned_cols=47 Identities=13% Similarity=0.112 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHhhccc-cc-------hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008524 214 AFRRMNQMEATLDKASHVY-PD-------CSAMATKLRAMTYNAEERVRLQKNQA 260 (563)
Q Consensus 214 ~~~~~~~m~~~~~~a~~~~-~d-------~~~~~~kl~~~~~~~e~~~~~~~~~~ 260 (563)
..+-|++-+.+-.+++... .| -++|..+..+++.++|++....++|-
T Consensus 33 m~kVMkEW~Eae~q~k~l~kaDpk~Ae~~k~~m~~rFQ~~v~sLEqE~a~ErqqL 87 (239)
T 3k66_A 33 VDKVMKEWGDLETRYNEQKAKDPKGAEKFKSQMNARFQKTVSSLEEEHKRMRKEI 87 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 3455666666666666655 34 25788999999999999999877764
No 16
>3pmr_A Amyloid-like protein 1; heparin binding, cell adhesion; 2.11A {Homo sapiens} SCOP: a.47.4.0 PDB: 3q7l_A 3q7g_A 3qmk_A*
Probab=25.07 E-value=2.8e+02 Score=26.98 Aligned_cols=46 Identities=13% Similarity=0.190 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHhhccc-cchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008524 215 FRRMNQMEATLDKASHVY-PDCSAMATKLRAMTYNAEERVRLQKNQA 260 (563)
Q Consensus 215 ~~~~~~m~~~~~~a~~~~-~d~~~~~~kl~~~~~~~e~~~~~~~~~~ 260 (563)
.+.|++-+.+-..+++.. .|-++|.....+++.++|++....++|-
T Consensus 46 ~~VmkEW~eae~q~k~lpkadkk~m~~rFQ~~v~aLE~E~~~ErqqL 92 (219)
T 3pmr_A 46 NEVMREWAMADNQSKNLPKADRQALNEHFQSILQTLEEQVSGERQRL 92 (219)
T ss_dssp HHHHHHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 344455555444444432 3456788999999999999999877764
No 17
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=24.29 E-value=88 Score=27.27 Aligned_cols=39 Identities=13% Similarity=0.278 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHhhccc--------------------cchHHHHHHHHHHHHHHHH
Q 008524 213 RAFRRMNQMEATLDKASHVY--------------------PDCSAMATKLRAMTYNAEE 251 (563)
Q Consensus 213 ~~~~~~~~m~~~~~~a~~~~--------------------~d~~~~~~kl~~~~~~~e~ 251 (563)
+--.|++..|-++-.+.+.. -+-..+.+|+.++|++|||
T Consensus 43 FYF~KLRdIEiLcQe~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~kIq~ILYaTee 101 (106)
T 4e61_A 43 FYFNKLRDIEILVHTTQDLINEGVYKFNDETITGHGNGNGGALLRFVKKVESILYATAE 101 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCC--------------CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccchhhcccccccchhHHHHHHHHHHHHhcccc
Confidence 34778888888887776531 1234678999999999997
Done!