BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 008525
         (563 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis
 pdb|3S9V|B Chain B, Abietadiene Synthase From Abies Grandis
 pdb|3S9V|C Chain C, Abietadiene Synthase From Abies Grandis
 pdb|3S9V|D Chain D, Abietadiene Synthase From Abies Grandis
          Length = 785

 Score = 30.8 bits (68), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 6/63 (9%)

Query: 14  IIFTILLFASPVLSDLILSKVDRR------IDLTSQIVRITSTLKVENEGSEPVSEVLLA 67
           ++    LF   VL+D +LSK+DR       + LT ++V  T T + E    E  S +   
Sbjct: 644 VVLISALFTGEVLTDEVLSKIDRESRFLQLMGLTGRLVNDTKTYQAERGQGEVASAIQCY 703

Query: 68  FPD 70
             D
Sbjct: 704 MKD 706


>pdb|2OCP|A Chain A, Crystal Structure Of Human Deoxyguanosine Kinase
 pdb|2OCP|B Chain B, Crystal Structure Of Human Deoxyguanosine Kinase
 pdb|2OCP|C Chain C, Crystal Structure Of Human Deoxyguanosine Kinase
 pdb|2OCP|D Chain D, Crystal Structure Of Human Deoxyguanosine Kinase
 pdb|2OCP|E Chain E, Crystal Structure Of Human Deoxyguanosine Kinase
 pdb|2OCP|F Chain F, Crystal Structure Of Human Deoxyguanosine Kinase
 pdb|2OCP|G Chain G, Crystal Structure Of Human Deoxyguanosine Kinase
 pdb|2OCP|H Chain H, Crystal Structure Of Human Deoxyguanosine Kinase
          Length = 241

 Score = 28.9 bits (63), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 3/39 (7%)

Query: 127 SYTFDVLAVFAH---ALRPFPEKITQADIQLVVFQESAF 162
           SYTF   +  +     L PFPEK+ QA   + +F+ S +
Sbjct: 71  SYTFQTFSFLSRLKVQLEPFPEKLLQARKPVQIFERSVY 109


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.135    0.385 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,057,462
Number of Sequences: 62578
Number of extensions: 600679
Number of successful extensions: 1307
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1307
Number of HSP's gapped (non-prelim): 3
length of query: 563
length of database: 14,973,337
effective HSP length: 104
effective length of query: 459
effective length of database: 8,465,225
effective search space: 3885538275
effective search space used: 3885538275
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)