Query 008525
Match_columns 563
No_of_seqs 176 out of 243
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 05:35:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008525.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008525hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1txp_A HnRNP C, heterogeneous 82.2 1.2 4.1E-05 29.7 3.1 24 540-563 2-25 (28)
2 3mq9_A Bone marrow stromal ant 80.5 2 6.9E-05 45.5 6.1 85 468-556 369-469 (471)
3 3rkg_A Magnesium transporter M 71.1 20 0.00067 35.8 10.0 96 461-561 130-244 (261)
4 2qyw_A Vesicle transport throu 69.7 17 0.0006 31.0 8.0 80 469-557 19-98 (102)
5 1vcs_A Vesicle transport throu 68.7 26 0.00088 29.9 8.9 78 470-557 10-87 (102)
6 2x3c_A Toxic extracellular end 67.8 4.9 0.00017 41.6 5.0 16 47-62 38-53 (343)
7 2fxo_A Myosin heavy chain, car 62.1 32 0.0011 30.4 8.6 56 460-515 29-85 (129)
8 1ykh_B RNA polymerase II holoe 58.6 95 0.0033 27.6 11.0 78 461-561 53-130 (132)
9 3u9w_A Leukotriene A-4 hydrola 58.3 87 0.003 34.4 13.1 90 31-137 18-107 (608)
10 1zhc_A Hypothetical protein HP 57.7 48 0.0016 26.8 8.1 63 480-559 4-66 (76)
11 3ra3_A P1C; coiled coil domain 56.9 12 0.00041 24.3 3.4 17 540-556 10-26 (28)
12 3oja_B Anopheles plasmodium-re 56.7 33 0.0011 36.9 9.3 24 535-558 549-572 (597)
13 1yke_B RNA polymerase II holoe 56.4 1E+02 0.0035 28.2 11.1 52 461-514 53-104 (151)
14 1fxk_A Prefoldin; archaeal pro 52.7 59 0.002 27.1 8.3 27 535-561 77-103 (107)
15 3onj_A T-snare VTI1; helix, HA 52.6 50 0.0017 27.8 7.8 84 469-558 5-94 (97)
16 2efr_A General control protein 50.1 67 0.0023 29.7 8.7 91 470-561 40-136 (155)
17 3na7_A HP0958; flagellar bioge 49.5 48 0.0016 32.4 8.3 23 536-558 96-118 (256)
18 2zqm_A Prefoldin beta subunit 46.7 68 0.0023 27.0 7.9 26 535-560 82-107 (117)
19 1m1j_C Fibrinogen gamma chain; 44.0 46 0.0016 35.3 7.5 27 534-560 109-135 (409)
20 1m1j_B Fibrinogen beta chain; 41.5 96 0.0033 33.4 9.6 24 536-559 174-197 (464)
21 3cvf_A Homer-3, homer protein 40.4 85 0.0029 25.9 6.9 22 494-515 8-29 (79)
22 3kd4_A Putative protease; stru 39.1 3.9E+02 0.013 28.6 14.2 181 30-227 7-204 (506)
23 3oja_B Anopheles plasmodium-re 38.7 47 0.0016 35.7 6.8 15 544-558 565-579 (597)
24 3isy_A Bsupi, intracellular pr 37.9 1.4E+02 0.0048 26.3 8.5 69 46-125 19-93 (120)
25 2jee_A YIIU; FTSZ, septum, coi 37.2 74 0.0025 26.3 6.1 37 527-563 44-81 (81)
26 3na7_A HP0958; flagellar bioge 36.8 2.4E+02 0.0083 27.3 11.1 25 536-560 149-173 (256)
27 3cve_A Homer protein homolog 1 34.1 1.2E+02 0.004 24.6 6.7 48 497-561 5-52 (72)
28 3u1c_A Tropomyosin alpha-1 cha 33.6 87 0.003 26.5 6.3 20 536-555 43-62 (101)
29 2k6w_A Putative uncharacterize 33.5 1.3E+02 0.0045 26.2 7.7 27 108-134 79-105 (120)
30 2g30_A AP-2 complex subunit be 32.6 1.3E+02 0.0044 29.8 8.3 71 38-143 44-118 (258)
31 3r2p_A Apolipoprotein A-I; amp 31.1 1.9E+02 0.0065 26.7 8.8 35 467-506 84-118 (185)
32 1p9i_A Cortexillin I/GCN4 hybr 29.9 18 0.0006 24.1 1.0 23 482-506 5-27 (31)
33 1uk5_A BAG-family molecular ch 29.9 1E+02 0.0034 27.0 6.1 23 540-562 81-103 (111)
34 1c1g_A Tropomyosin; contractIl 29.0 2.6E+02 0.0087 25.5 9.4 29 535-563 256-284 (284)
35 3iv1_A Tumor susceptibility ge 28.0 1.1E+02 0.0038 25.1 5.7 60 494-562 1-60 (78)
36 3qne_A Seryl-tRNA synthetase, 28.0 79 0.0027 34.3 6.2 29 532-560 80-108 (485)
37 3gwk_C SAG1039, putative uncha 26.7 1.8E+02 0.0063 23.2 7.1 54 461-515 18-71 (98)
38 4fla_A Regulation of nuclear P 26.6 2.4E+02 0.0082 25.7 8.4 77 468-560 71-147 (152)
39 1ugo_A BCL2-associated athanog 26.3 1.1E+02 0.0037 26.3 5.5 23 540-562 69-91 (99)
40 3u59_A Tropomyosin beta chain; 24.7 1.5E+02 0.0053 24.8 6.3 9 504-512 49-57 (101)
41 2dq0_A Seryl-tRNA synthetase; 23.8 82 0.0028 33.7 5.4 29 532-560 78-106 (455)
42 2yy0_A C-MYC-binding protein; 23.6 76 0.0026 24.0 3.7 25 538-562 20-44 (53)
43 1ic2_A Tropomyosin alpha chain 23.6 2E+02 0.0067 23.2 6.5 25 536-560 40-64 (81)
44 1m62_A BAG-family molecular ch 23.0 1.7E+02 0.0057 24.4 6.0 23 540-562 62-84 (87)
45 2yy0_A C-MYC-binding protein; 22.6 1.1E+02 0.0038 23.1 4.4 34 457-490 18-51 (53)
46 2avr_X Adhesion A; antiparalle 22.5 4E+02 0.014 23.5 8.9 52 461-514 5-56 (119)
47 2dfs_A Myosin-5A; myosin-V, in 22.4 1.6E+02 0.0053 35.0 7.9 10 405-414 745-754 (1080)
48 2xdt_A Endoplasmic reticulum a 22.3 3.4E+02 0.012 31.2 10.6 94 27-136 11-108 (897)
49 3vkg_A Dynein heavy chain, cyt 21.9 1.9E+02 0.0066 38.5 9.0 22 470-491 1946-1967(3245)
50 4dzn_A Coiled-coil peptide CC- 21.8 86 0.003 21.0 3.1 19 538-556 3-21 (33)
51 3g67_A Methyl-accepting chemot 21.7 2.2E+02 0.0075 27.2 7.5 86 471-562 125-211 (213)
52 3k6s_A Integrin alpha-X; cell 21.7 1E+03 0.035 28.0 18.0 86 45-138 780-867 (1095)
53 1wle_A Seryl-tRNA synthetase; 21.4 4.4E+02 0.015 28.4 10.6 29 532-560 125-153 (501)
54 2dq3_A Seryl-tRNA synthetase; 20.9 1.5E+02 0.0051 31.2 6.7 30 531-560 76-105 (425)
55 1m7k_A Silencer of death domai 20.9 2E+02 0.0067 24.7 6.1 23 540-562 75-97 (99)
56 3ije_A Integrin alpha-V; integ 20.7 4.6E+02 0.016 30.6 11.3 86 38-138 617-703 (967)
57 3lss_A Seryl-tRNA synthetase; 20.6 1.7E+02 0.0059 31.6 7.1 29 532-560 113-141 (484)
58 4g1a_A AQ-C16C19 peptide; heli 20.3 43 0.0015 22.4 1.4 22 535-556 5-26 (32)
59 1m1j_B Fibrinogen beta chain; 20.2 2.1E+02 0.0072 30.8 7.6 25 536-560 167-191 (464)
60 3ghg_C Fibrinogen gamma chain; 20.1 2.3E+02 0.0079 30.0 7.8 26 535-560 110-135 (411)
61 2d4y_A HAP1, flagellar HOOK-as 20.0 2.5E+02 0.0085 29.6 8.2 99 445-557 47-149 (463)
No 1
>1txp_A HnRNP C, heterogeneous nuclear ribonucleoprotein C protein; antiparallel four helix coiled coil tetramer HNRNPC, signaling protein; NMR {Homo sapiens}
Probab=82.24 E-value=1.2 Score=29.67 Aligned_cols=24 Identities=33% Similarity=0.630 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcC
Q 008525 540 AAQQQKITALRQEVENLLELIDEI 563 (563)
Q Consensus 540 ~~~~~k~~~~~~~~~~~~~~l~~~ 563 (563)
.++.+.+..++++||+||+.|+.|
T Consensus 2 Q~IkkELtQIK~kvDsLLe~Le~~ 25 (28)
T 1txp_A 2 QAIKKELTQIKQKVDSLLENLEKI 25 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhh
Confidence 567788899999999999999865
No 2
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=80.50 E-value=2 Score=45.47 Aligned_cols=85 Identities=14% Similarity=0.170 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCccccchhHhHHHHHHHHHHHHHHHHhhc-----------cceeccccccccch---
Q 008525 468 KAADGLLKELSKELKLVLSFLQSSSAASQILPKVEELVAKEKDLQEKVMAKH-----------STVVDCYEKKTGIR--- 533 (563)
Q Consensus 468 k~~~~~~k~~~~~~~~~~~~l~~~~~~~~~~~kv~e~~~~~~~~~~~~~~~~-----------~~~~~~~e~~~~g~--- 533 (563)
++.++-++++.+++..++.+++.+ .++.+...+||++=.++|+.+ ++. .+.-|+.||+++-.
T Consensus 369 ~t~eeal~~~~~~i~~~l~~~~~~---~e~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (471)
T 3mq9_A 369 QTVDEALKDAQTRITAARDGLRAV---MEARNVTHLLQQELTEAQKGF-QDVEAQAATANHTVMALMASLDAEKAQGQKK 444 (471)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhhHHH---HHhhhHHHHHHHHHHHHhhhH-HHHHHHhhhcchhHHHHHHHHHHHHHHHHHH
Confidence 345555666666666666666653 355566666666555555544 221 12234556665522
Q ss_pred --hhhhhHHHHHHHHHHHHHHHHHH
Q 008525 534 --DSENRVAAQQQKITALRQEVENL 556 (563)
Q Consensus 534 --~~~~~~~~~~~k~~~~~~~~~~~ 556 (563)
+.|+||..+.+|+++++-+|+.+
T Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (471)
T 3mq9_A 445 VEELEGEITTLNHKLQDASAEVERL 469 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67888888888888888877754
No 3
>3rkg_A Magnesium transporter MRS2, mitochondrial; matrix located domain, hydrophobic GATE magnesium binding site, metal transport; 1.28A {Saccharomyces cerevisiae}
Probab=71.09 E-value=20 Score=35.85 Aligned_cols=96 Identities=20% Similarity=0.112 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccchhHhHHHHHHHHHHHHHHHHhhccceecccccccc---------
Q 008525 461 QACKAARKAADGLLKELSKELKLVLSFLQSSSAASQILPKVEELVAKEKDLQEKVMAKHSTVVDCYEKKTG--------- 531 (563)
Q Consensus 461 ~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~~~~~~~~~~kv~e~~~~~~~~~~~~~~~~~~~~~~~e~~~~--------- 531 (563)
+.+.++...++++++.+.....+++..|.+.. + .+|+.+|.-+-+.+.++. ++....-|+.|.++.
T Consensus 130 a~L~~v~~~Le~e~~~l~~~~~~~L~~L~~~i-~---~~~L~~Ll~~~k~L~~~~-~kv~~vr~~leelLddDeDm~~my 204 (261)
T 3rkg_A 130 SIFINVMSALETDFKLHSQICIQILNDLENEV-N---RLKLRHLLIKSKDLTLFY-QKTLLIRDLLDELLENDDDLANMY 204 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC-C---HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHTCHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-C---HHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHHHcCHHHHHHhh
Confidence 45566677889999999999888888887652 2 267777665555555543 443333333333221
Q ss_pred -------ch---hhhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 008525 532 -------IR---DSENRVAAQQQKITALRQEVENLLELID 561 (563)
Q Consensus 532 -------g~---~~~~~~~~~~~k~~~~~~~~~~~~~~l~ 561 (563)
.. ++|.=+.+.-+..+++.++++++.+.++
T Consensus 205 LT~k~~~~~d~eElEmLLE~Y~~q~d~~~~~~~~L~~~I~ 244 (261)
T 3rkg_A 205 LTVKKSPKDNFSDLEMLIETYYTQCDEYVQQSESLIQDIK 244 (261)
T ss_dssp CSSCCCTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 5777777888888999999988888876
No 4
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=69.68 E-value=17 Score=30.99 Aligned_cols=80 Identities=15% Similarity=0.197 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCccccchhHhHHHHHHHHHHHHHHHHhhccceeccccccccchhhhhhHHHHHHHHHH
Q 008525 469 AADGLLKELSKELKLVLSFLQSSSAASQILPKVEELVAKEKDLQEKVMAKHSTVVDCYEKKTGIRDSENRVAAQQQKITA 548 (563)
Q Consensus 469 ~~~~~~k~~~~~~~~~~~~l~~~~~~~~~~~kv~e~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~~~~~~~~~~~~k~~~ 548 (563)
..|++|+.++.+|...++.+.....+.+=-..+.++.+.=.+..|++ .+--..+ .+-....+ +..+.|+.+
T Consensus 19 ~YE~df~~l~~~i~~kl~~i~~~~~~e~rk~~i~~ie~~ldEA~eLl-~qMelE~-------r~~p~s~R-~~~~~klr~ 89 (102)
T 2qyw_A 19 KLHEIFRGLLEDLQGVPERLLGTAGTEEKKKLVRDFDEKQQEANETL-AEMEEEL-------RYAPLTFR-NPMMSKLRN 89 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHH-HHHHHHH-------HTSCHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHHHH-HHHHHHH-------HhCCHHHH-HHHHHHHHH
Confidence 47899999999999999999643112333344555555555566654 4433332 11133456 778888888
Q ss_pred HHHHHHHHH
Q 008525 549 LRQEVENLL 557 (563)
Q Consensus 549 ~~~~~~~~~ 557 (563)
.+++++.|=
T Consensus 90 Yk~dL~~lk 98 (102)
T 2qyw_A 90 YRKDLAKLH 98 (102)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888888764
No 5
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=68.74 E-value=26 Score=29.87 Aligned_cols=78 Identities=12% Similarity=0.165 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHhccCccccchhHhHHHHHHHHHHHHHHHHhhccceeccccccccchhhhhhHHHHHHHHHHH
Q 008525 470 ADGLLKELSKELKLVLSFLQSSSAASQILPKVEELVAKEKDLQEKVMAKHSTVVDCYEKKTGIRDSENRVAAQQQKITAL 549 (563)
Q Consensus 470 ~~~~~k~~~~~~~~~~~~l~~~~~~~~~~~kv~e~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~~~~~~~~~~~~k~~~~ 549 (563)
.+++|+.++.+|...++.+..-+ +.+=-..+.++.+.=.+..|+| .+--..| +-+ ....+ ...+.|+.+.
T Consensus 10 YE~df~~l~~~i~~kl~~i~~~~-geerk~~i~~ie~~l~EA~ell-~qMelE~----r~~---p~~~R-~~~~~klr~Y 79 (102)
T 1vcs_A 10 YEQDFAVLTAEITSKIARVPRLP-PDEKKQMVANVEKQLEEARELL-EQMDLEV----REI---PPQSR-GMYSNRMRSY 79 (102)
T ss_dssp SHHHHHHHHHHHHHHHHHGGGSC-TTTHHHHHHHHHHHHHHHHHHH-HHHHHHH----TTS---CTTTH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhccC-cHHHHHHHHHHHHHHHHHHHHH-HHHHHHH----HhC---CHHhH-HHHHHHHHHH
Confidence 57899999999999999998642 4444445666666666666664 4433332 111 22334 5666666666
Q ss_pred HHHHHHHH
Q 008525 550 RQEVENLL 557 (563)
Q Consensus 550 ~~~~~~~~ 557 (563)
+.+++.|-
T Consensus 80 k~dL~~lk 87 (102)
T 1vcs_A 80 KQEMGKLE 87 (102)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666643
No 6
>2x3c_A Toxic extracellular endopeptidase; hydrolase; 1.99A {Aeromonas salmonicida subsp} PDB: 2x3a_A 2x3b_A
Probab=67.80 E-value=4.9 Score=41.65 Aligned_cols=16 Identities=25% Similarity=0.640 Sum_probs=12.9
Q ss_pred EEEEEEEEeCCCCCee
Q 008525 47 ITSTLKVENEGSEPVS 62 (563)
Q Consensus 47 ~t~~i~vkN~g~~p~~ 62 (563)
..++++|+|.|++|.+
T Consensus 38 ~~vk~tvtN~g~~~~~ 53 (343)
T 2x3c_A 38 VRVNLTLTNTGDKPIR 53 (343)
T ss_dssp CEEEEEEEECSSSCEE
T ss_pred eEEEEEEEeCCCCceE
Confidence 4567788999999975
No 7
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=62.09 E-value=32 Score=30.42 Aligned_cols=56 Identities=18% Similarity=0.248 Sum_probs=39.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccc-cchhHhHHHHHHHHHHHHHHH
Q 008525 460 VQACKAARKAADGLLKELSKELKLVLSFLQSSSAA-SQILPKVEELVAKEKDLQEKV 515 (563)
Q Consensus 460 ~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~~~~~-~~~~~kv~e~~~~~~~~~~~~ 515 (563)
.......|+.++..+..+..+...|+..|+++... +++-++...|++...++-+.+
T Consensus 29 l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l 85 (129)
T 2fxo_A 29 LEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKV 85 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34556678889999999999999999999987322 455566666655555544443
No 8
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=58.60 E-value=95 Score=27.65 Aligned_cols=78 Identities=10% Similarity=0.095 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccchhHhHHHHHHHHHHHHHHHHhhccceeccccccccchhhhhhHH
Q 008525 461 QACKAARKAADGLLKELSKELKLVLSFLQSSSAASQILPKVEELVAKEKDLQEKVMAKHSTVVDCYEKKTGIRDSENRVA 540 (563)
Q Consensus 461 ~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~~~~~~~~~~kv~e~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~~~~~~~~ 540 (563)
+.|.+..+.+-.++-...|.|.-|.+.|=.. +..-.+....|.++++++++.= .++.
T Consensus 53 ~~f~~~~~ela~dli~k~kqIe~LIdsLP~~--~~see~Q~~ri~~L~~E~~~~~---------------------~el~ 109 (132)
T 1ykh_B 53 EEFSNTIDELSTDIILKTRQINKLIDSLPGV--DVSAEEQLRKIDMLQKKLVEVE---------------------DEKI 109 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSTTT--TCCHHHHHHHHHHHHHHHHHHH---------------------HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC--CCCHHHHHHHHHHHHHHHHHHH---------------------HHHH
Confidence 4556666666666667789999999999976 6677788888999888888752 1212
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 008525 541 AQQQKITALRQEVENLLELID 561 (563)
Q Consensus 541 ~~~~k~~~~~~~~~~~~~~l~ 561 (563)
..-++.+++..+|++++..+.
T Consensus 110 ~~v~e~e~ll~~v~~~l~~i~ 130 (132)
T 1ykh_B 110 EAIKKKEKLMRHVDSMIEDFV 130 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 233444566666777666554
No 9
>3u9w_A Leukotriene A-4 hydrolase; hydrolase-hydrolase inhibitor complex; HET: 28P; 1.25A {Homo sapiens} PDB: 3cho_A* 3chp_A* 3chq_A* 3chr_A* 3chs_A* 3fun_A* 1hs6_A* 2vj8_A* 3fh7_A* 3fh8_A* 3fhe_A* 3fts_A* 3ftu_A* 3ftv_A* 3ftw_A* 3ftx_A* 3fty_A* 3ftz_A* 3fu0_A* 3fu3_A* ...
Probab=58.29 E-value=87 Score=34.37 Aligned_cols=90 Identities=17% Similarity=0.182 Sum_probs=58.0
Q ss_pred EeeEEEEEEcCCCeEEEEEEEEEEeCCCCCeeEEEEEeCCccccceeEEEEeecCCCCcccccccccceeeecCCCCCCc
Q 008525 31 LSKVDRRIDLTSQIVRITSTLKVENEGSEPVSEVLLAFPDLQVKDLALLKASPHEGKGKVKSLSASLPVENVKPNGMPAA 110 (563)
Q Consensus 31 n~~v~RtIDL~~~~vk~t~~i~vkN~g~~p~~~y~~~l~~~~~~~ls~i~a~~~~~k~k~~~~~~~l~v~~~~~~~~~~~ 110 (563)
.-++.=++|+.+..+.-+++|++++..+ ..++..|-. ..+..-++.+++ + .+....... ...+
T Consensus 18 Hy~L~l~vD~~~~~~~G~v~I~~~~~~~-~~~~i~Ld~-----~~L~I~~V~v~g-~--------~~~~~~~~~--~~~~ 80 (608)
T 3u9w_A 18 HLHLRCSVDFTRRTLTGTAALTVQSQED-NLRSLVLDT-----KDLTIEKVVING-Q--------EVKYALGER--QSYK 80 (608)
T ss_dssp EEEEEEEEETTTTEEEEEEEEEEEECST-TEEEEEEEE-----SSCEEEEEEETT-E--------ECCEEECCC--CGGG
T ss_pred EEEEEEEEECCCCEEEEEEEEEEEECCC-CCCEEEEEC-----CCCEEEEEEECC-E--------Ecceecccc--cccc
Confidence 3456667899999999999999988653 245555543 234444555532 1 111211111 1112
Q ss_pred ceEEEEEcCCCCCCCCeEEEEEEEEec
Q 008525 111 LTFYAVKLPKALGKGDSYTFDVLAVFA 137 (563)
Q Consensus 111 ~~~y~V~Lp~pl~pg~~~tl~v~~v~~ 137 (563)
.....|.||.|+.+|++++|.|.|..+
T Consensus 81 ~~~l~I~l~~~l~~g~~~~l~I~y~~~ 107 (608)
T 3u9w_A 81 GSPMEISLPIALSKNQEIVIEISFETS 107 (608)
T ss_dssp CEEEEEEEEEEECTTCEEEEEEEEECC
T ss_pred CceEEEEcCCCCCCCCEEEEEEEEEEE
Confidence 356899999999999999999998754
No 10
>1zhc_A Hypothetical protein HP1242; A-helical protein, unknown function; NMR {Helicobacter pylori}
Probab=57.72 E-value=48 Score=26.84 Aligned_cols=63 Identities=13% Similarity=0.232 Sum_probs=47.8
Q ss_pred HHHHHHHHhccCccccchhHhHHHHHHHHHHHHHHHHhhccceeccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHh
Q 008525 480 ELKLVLSFLQSSSAASQILPKVEELVAKEKDLQEKVMAKHSTVVDCYEKKTGIRDSENRVAAQQQKITALRQEVENLLEL 559 (563)
Q Consensus 480 ~~~~~~~~l~~~~~~~~~~~kv~e~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~~~~~~~~~~~~k~~~~~~~~~~~~~~ 559 (563)
|..++++.|+.+ .+..+.-..+=..+|+++..+- .... ..+ ++..+++++-.|+.+|..++..
T Consensus 4 e~~d~I~~Lk~~--d~~f~~L~~eH~~LD~~I~~le--~~~~------------~~~-~l~~LKk~KL~LKDeI~~lL~~ 66 (76)
T 1zhc_A 4 EFRDEISVLKAN--NPHFDKIFEKHNQLDDDIKTAE--QQNA------------SDA-EVSHMKKQKLKLKDEIHSMIIE 66 (76)
T ss_dssp HHHHHHHHSTTT--STTHHHHHHHHHHHHHHHHHHH--TTCS------------CHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHh--cCCC------------ChH-HHHHHHHHHHHhHHHHHHHHHH
Confidence 446788899987 7888888888888888888752 1111 123 7788999999999999998864
No 11
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=56.85 E-value=12 Score=24.33 Aligned_cols=17 Identities=47% Similarity=0.661 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 008525 540 AAQQQKITALRQEVENL 556 (563)
Q Consensus 540 ~~~~~k~~~~~~~~~~~ 556 (563)
..+.||+.+|+++|.+|
T Consensus 10 daleqkiaalkqkiasl 26 (28)
T 3ra3_A 10 DALEQKIAALKQKIASL 26 (28)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 47899999999999887
No 12
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=56.66 E-value=33 Score=36.91 Aligned_cols=24 Identities=25% Similarity=0.270 Sum_probs=14.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHH
Q 008525 535 SENRVAAQQQKITALRQEVENLLE 558 (563)
Q Consensus 535 ~~~~~~~~~~k~~~~~~~~~~~~~ 558 (563)
+|.++...++++.+++++++.+-.
T Consensus 549 le~~~~~~~~~~~~l~~e~~~~~~ 572 (597)
T 3oja_B 549 LEKQLDNKRAKQAELRQETSLKRQ 572 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHH
Confidence 555555666666666666655533
No 13
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=56.38 E-value=1e+02 Score=28.17 Aligned_cols=52 Identities=8% Similarity=0.059 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccchhHhHHHHHHHHHHHHHH
Q 008525 461 QACKAARKAADGLLKELSKELKLVLSFLQSSSAASQILPKVEELVAKEKDLQEK 514 (563)
Q Consensus 461 ~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~~~~~~~~~~kv~e~~~~~~~~~~~ 514 (563)
..|.+..+.+-.++-...|.|.-|.+.|=.. +..-.+.+..|.++++++++.
T Consensus 53 ~~f~~~~~ela~dli~kakqIe~LIdsLPg~--~~seeeQ~~ri~~Le~E~~~~ 104 (151)
T 1yke_B 53 EEFSNTIDELSTDIILKTRQINKLIDSLPGV--DVSAEEQLRKIDMLQKKLVEV 104 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTS--SSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC--CCCHHHHHHHHHHHHHHHHHH
Confidence 4455555666666666689999999999976 667788888899998888875
No 14
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=52.66 E-value=59 Score=27.07 Aligned_cols=27 Identities=7% Similarity=0.094 Sum_probs=15.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 008525 535 SENRVAAQQQKITALRQEVENLLELID 561 (563)
Q Consensus 535 ~~~~~~~~~~k~~~~~~~~~~~~~~l~ 561 (563)
++.+|+.+..++..+..+++.+-..|.
T Consensus 77 i~~~i~~le~~~~~~~~~l~~lk~~l~ 103 (107)
T 1fxk_A 77 LQLREKTIERQEERVMKKLQEMQVNIQ 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555566666666666655554443
No 15
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=52.62 E-value=50 Score=27.80 Aligned_cols=84 Identities=12% Similarity=0.162 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCccccchhHhHHHHHHHHHHHHHHHHhhccceeccccccccch-----hhhhhHHHHH
Q 008525 469 AADGLLKELSKELKLVLSFLQSSSAASQILPKVEELVAKEKDLQEKVMAKHSTVVDCYEKKTGIR-----DSENRVAAQQ 543 (563)
Q Consensus 469 ~~~~~~k~~~~~~~~~~~~l~~~~~~~~~~~kv~e~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~-----~~~~~~~~~~ 543 (563)
.-+++|+.++.+|...++.+..-+ +.+=-..+.++...-.+..|++ .+--..+ +-++|- -.-++|...+
T Consensus 5 ~YE~df~~~~~~i~~~l~~~~~~~-ge~Rk~~i~~ie~~ldEA~ell-~qMelE~----~~~~~p~~~R~~~~~klr~Yk 78 (97)
T 3onj_A 5 SYESDFKTTLEQAKASLAEAPSQP-LSQRNTTLKHVEQQQDELFDLL-DQMDVEV----NNSIGDASERATYKAKLREWK 78 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGSC-HHHHHHHHHHHHHHHHHHHHHH-HHHHHHH----HHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHHHHHH-HHHHHHH----HhCCCCHHHHHHHHHHHHHHH
Confidence 468899999999999999998542 3333344555555555555654 4433332 111001 2344444455
Q ss_pred HHHHH-HHHHHHHHHH
Q 008525 544 QKITA-LRQEVENLLE 558 (563)
Q Consensus 544 ~k~~~-~~~~~~~~~~ 558 (563)
+.++. |+.++..|+|
T Consensus 79 ~dl~~~lk~~lk~l~d 94 (97)
T 3onj_A 79 KTIQSDIKRPLQSLVD 94 (97)
T ss_dssp HHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhh
Confidence 55555 5555555554
No 16
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=50.08 E-value=67 Score=29.66 Aligned_cols=91 Identities=26% Similarity=0.309 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHHHHhccCc-cccchhHhHHHHHHHHHHHHHHHHhhccceeccccccccch-----hhhhhHHHHH
Q 008525 470 ADGLLKELSKELKLVLSFLQSSS-AASQILPKVEELVAKEKDLQEKVMAKHSTVVDCYEKKTGIR-----DSENRVAAQQ 543 (563)
Q Consensus 470 ~~~~~k~~~~~~~~~~~~l~~~~-~~~~~~~kv~e~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~-----~~~~~~~~~~ 543 (563)
.++..++|..+|...-..||+=- .....++|-......=+.+.+++ ...-+.++-+||.|..- .++.++..-+
T Consensus 40 aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kL-KEAE~RAE~AERsv~kLEk~id~lEd~L~~~K 118 (155)
T 2efr_A 40 SEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKL-KEAETRAEFAERSVTKLEKSIDDLEDELYAQK 118 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555555411 12234455555555556666664 55556666678877644 4677777888
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 008525 544 QKITALRQEVENLLELID 561 (563)
Q Consensus 544 ~k~~~~~~~~~~~~~~l~ 561 (563)
.|...+.+++|+.+.-|.
T Consensus 119 ek~~~i~~eLd~tl~el~ 136 (155)
T 2efr_A 119 LKYKAISEEMKQLEDKVE 136 (155)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888888888888776654
No 17
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=49.54 E-value=48 Score=32.44 Aligned_cols=23 Identities=17% Similarity=0.258 Sum_probs=9.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Q 008525 536 ENRVAAQQQKITALRQEVENLLE 558 (563)
Q Consensus 536 ~~~~~~~~~k~~~~~~~~~~~~~ 558 (563)
..||..+..++..+..+|..+++
T Consensus 96 ~kEie~~~~~i~~lE~eile~~e 118 (256)
T 3na7_A 96 NIEEDIAKERSNQANREIENLQN 118 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444433333
No 18
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=46.66 E-value=68 Score=27.05 Aligned_cols=26 Identities=23% Similarity=0.312 Sum_probs=13.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhh
Q 008525 535 SENRVAAQQQKITALRQEVENLLELI 560 (563)
Q Consensus 535 ~~~~~~~~~~k~~~~~~~~~~~~~~l 560 (563)
++.+|+.+..+++.+..+++.+-+.|
T Consensus 82 ie~~i~~le~~~~~l~~~l~~lk~~l 107 (117)
T 2zqm_A 82 LEVRLNALERQEKKLNEKLKELTAQI 107 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555544433
No 19
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=44.01 E-value=46 Score=35.32 Aligned_cols=27 Identities=22% Similarity=0.244 Sum_probs=20.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 008525 534 DSENRVAAQQQKITALRQEVENLLELI 560 (563)
Q Consensus 534 ~~~~~~~~~~~k~~~~~~~~~~~~~~l 560 (563)
..++.+..+++|+++|+++|..|...+
T Consensus 109 ~l~~~~~~~~~~i~~l~~~i~~l~~~~ 135 (409)
T 1m1j_C 109 QLTDMHIMNSNKITQLKQKIAQLESHC 135 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 456667778888888888888887644
No 20
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=41.51 E-value=96 Score=33.44 Aligned_cols=24 Identities=13% Similarity=0.257 Sum_probs=14.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHh
Q 008525 536 ENRVAAQQQKITALRQEVENLLEL 559 (563)
Q Consensus 536 ~~~~~~~~~k~~~~~~~~~~~~~~ 559 (563)
+..+..+.+|++.|.+++..+.+.
T Consensus 174 ~~~~~~l~~ki~~l~~~~~~~~~~ 197 (464)
T 1m1j_B 174 RAVIDSLHKKIQKLENAIATQTDY 197 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334455666777777766666554
No 21
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=40.37 E-value=85 Score=25.86 Aligned_cols=22 Identities=18% Similarity=0.424 Sum_probs=14.5
Q ss_pred ccchhHhHHHHHHHHHHHHHHH
Q 008525 494 ASQILPKVEELVAKEKDLQEKV 515 (563)
Q Consensus 494 ~~~~~~kv~e~~~~~~~~~~~~ 515 (563)
...+..|+.++-.....+.++|
T Consensus 8 ~e~~~~klq~~E~rN~~Le~~v 29 (79)
T 3cvf_A 8 REETQQKVQDLETRNAELEHQL 29 (79)
T ss_dssp --CTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHH
Confidence 4567777777777777777765
No 22
>3kd4_A Putative protease; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE; 2.00A {Parabacteroides distasonis atcc 8503}
Probab=39.08 E-value=3.9e+02 Score=28.55 Aligned_cols=181 Identities=14% Similarity=0.118 Sum_probs=93.6
Q ss_pred EEeeEEEEEEcCC--C-eEEEEEEEEEEeCC-CCC-eeEEEEEeCCccccceeEEEEeecCCCCcccccccccceeeec-
Q 008525 30 ILSKVDRRIDLTS--Q-IVRITSTLKVENEG-SEP-VSEVLLAFPDLQVKDLALLKASPHEGKGKVKSLSASLPVENVK- 103 (563)
Q Consensus 30 ~n~~v~RtIDL~~--~-~vk~t~~i~vkN~g-~~p-~~~y~~~l~~~~~~~ls~i~a~~~~~k~k~~~~~~~l~v~~~~- 103 (563)
+-.....++.+.. + ..+....++|-|.. -+. ..++.+.+.+. .+++..++|..-...++..... .=.+....
T Consensus 7 ~~~~~~~~~~v~~dg~~~~~~~~~ikIl~~~G~~~~~a~i~i~yd~~-~e~l~~~~a~t~~~dGk~i~~~-~~~i~~~~~ 84 (506)
T 3kd4_A 7 EYGKVSKAWTLHADGSQEYRSSMELTLFTHTAMNSTYGESFIVYNPD-FQTLKIHSSYTRQKDGTIVKTP-DNAFVEVLP 84 (506)
T ss_dssp EEEEEEEEEEECTTSCEEEEEEEEEEECSHHHHTSGGGEEEEEECTT-TEEEEEEEEEEECTTSCEEECC-GGGEEEECC
T ss_pred eEEEEEEEEEEccCCcEEEEEEEEEEEcChhhhhhccceEEEEeCCC-CcEEEEEEEEEECCCCCEEEcc-hhheEEecc
Confidence 3344445555542 2 45666666676643 332 56677777543 5778888887622222221100 00122221
Q ss_pred -C-CCC--CCcceEEEEEcCCCCCCCCeEEEEEEEEecccccccCcccccCCceeEEEeecceecCcceeeEEEEEEEec
Q 008525 104 -P-NGM--PAALTFYAVKLPKALGKGDSYTFDVLAVFAHALRPFPEKITQADIQLVVFQESAFYLTPYVVKVQSLSVKLP 179 (563)
Q Consensus 104 -~-~~~--~~~~~~y~V~Lp~pl~pg~~~tl~v~~v~~~~l~P~P~~I~Q~e~Q~v~f~~n~y~~SpY~T~~q~t~vkl~ 179 (563)
. .+. -++.+.-.+.||. +++|+.+.+..+... +.| -+. + |....++.+.+|+.....+|..|
T Consensus 85 ~~~~~~~~y~d~k~~~~~~p~-v~~G~iIey~Y~i~~-----~~~-~~~--~-----~~~~~~fq~~~Pv~~~~~~v~~P 150 (506)
T 3kd4_A 85 RFAADAPAYNQLKEMVVVHTG-LELGATIYLDYSIIT-----KPG-YYP--A-----LDINERLQETSPVKECKVSISVP 150 (506)
T ss_dssp GGGTTCGGGTTCEEEEEECCS-CCTTCEEEEEEEEEE-----CTT-SCS--S-----CEEEEECCCSSCEEEEEEEEEEE
T ss_pred ccccccccccCceEEEEEcCC-CCCCcEEEEEEEEEe-----cCC-CCC--c-----ceeeeeccCCceEEEEEEEEEcC
Confidence 1 000 1345678889986 999998777555432 222 121 1 11112456788999999999998
Q ss_pred CCCcceeeccC----Cc-eeeC--CeEEeccCCCCCCCCccCEEEEEeeccceeE
Q 008525 180 ESRIESYTKLE----NT-KIHG--SEIKYGPYENLPSFSYSPIVVHFESNQPFAV 227 (563)
Q Consensus 180 s~~i~syT~~~----~~-~~~g--~~i~YGP~~~v~p~s~~pi~Vhyenn~Pf~~ 227 (563)
...--.+...+ +. +..+ ..++|- .+|+||+..+|..-...+..|.+.
T Consensus 151 ~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~-~~nipa~~~E~~~p~~~~~~p~v~ 204 (506)
T 3kd4_A 151 EGTPLACGLYGSPVKAVEESHDGIKEVHWT-LRNIPASSREAFQPKNREASPHLV 204 (506)
T ss_dssp TTSCCEEEEETCCCCCEEEEETTEEEEEEE-EEEECCCCCCTTCCSSCTTSCEEE
T ss_pred CCCcEEEEecCCCcCceEEecCCeEEEEEE-EccCCCCCCCCCCCcccccCcEEE
Confidence 65433332221 11 2222 335553 568888766554433345555544
No 23
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=38.70 E-value=47 Score=35.74 Aligned_cols=15 Identities=33% Similarity=0.370 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHH
Q 008525 544 QKITALRQEVENLLE 558 (563)
Q Consensus 544 ~k~~~~~~~~~~~~~ 558 (563)
+..+++++|+..+++
T Consensus 565 ~e~~~~~~~~~~l~~ 579 (597)
T 3oja_B 565 QETSLKRQKVKQLEA 579 (597)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333444443333
No 24
>3isy_A Bsupi, intracellular proteinase inhibitor; intracellular proteinase inhibitor bsupi, beta sandwich, GRE structural genomics; HET: PG4; 2.61A {Bacillus subtilis}
Probab=37.87 E-value=1.4e+02 Score=26.27 Aligned_cols=69 Identities=13% Similarity=0.193 Sum_probs=41.3
Q ss_pred EEEEEEEEEeCCCCCeeEEEEEeCCccccceeEEEEeecCCCCcc------cccccccceeeecCCCCCCcceEEEEEcC
Q 008525 46 RITSTLKVENEGSEPVSEVLLAFPDLQVKDLALLKASPHEGKGKV------KSLSASLPVENVKPNGMPAALTFYAVKLP 119 (563)
Q Consensus 46 k~t~~i~vkN~g~~p~~~y~~~l~~~~~~~ls~i~a~~~~~k~k~------~~~~~~l~v~~~~~~~~~~~~~~y~V~Lp 119 (563)
.....++++|.++.+.. +.++..+...+.... .+++ +. .-....+....++ +++...|.+++|
T Consensus 19 ~v~~~ltv~N~s~~~v~---l~f~Sgq~~Df~v~d---~~G~-~VwrwS~~~~FtQa~~~~tl~----pGE~~~f~~~w~ 87 (120)
T 3isy_A 19 QIKFNMSLKNQSERAIE---FQFSTGQKFELVVYD---SEHK-ERYRYSKEKMFTQAFQNLTLE----SGETYDFSDVWK 87 (120)
T ss_dssp CEEEEEEEEECSSSCEE---EEESSSCCEEEEEEC---TTCC-EEEETTTTCCCCCCCEEEEEC----TTCEEEEEEEES
T ss_pred eEEEEEEEEcCCCCcEE---EEeCCCCEEEEEEEC---CCCC-EEEEccccchhhhhhceEEEC----CCCEEEEEEEeC
Confidence 56788899999988765 777777655555442 1121 11 0011122222222 345678999999
Q ss_pred CCCCCC
Q 008525 120 KALGKG 125 (563)
Q Consensus 120 ~pl~pg 125 (563)
.++.||
T Consensus 88 ~~~~pG 93 (120)
T 3isy_A 88 EVPEPG 93 (120)
T ss_dssp SCCCSE
T ss_pred CCCCCc
Confidence 888888
No 25
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=37.17 E-value=74 Score=26.35 Aligned_cols=37 Identities=14% Similarity=0.275 Sum_probs=26.2
Q ss_pred cccccch-hhhhhHHHHHHHHHHHHHHHHHHHHhhhcC
Q 008525 527 EKKTGIR-DSENRVAAQQQKITALRQEVENLLELIDEI 563 (563)
Q Consensus 527 e~~~~g~-~~~~~~~~~~~k~~~~~~~~~~~~~~l~~~ 563 (563)
+-+-+++ ..+.+.+.+++-+..-.++|++||.-+|++
T Consensus 44 ~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk~e~v 81 (81)
T 2jee_A 44 QNAQHQREELERENNHLKEQQNGWQERLQALLGRMEEV 81 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 3333444 356666788888888899999999888864
No 26
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=36.80 E-value=2.4e+02 Score=27.29 Aligned_cols=25 Identities=24% Similarity=0.299 Sum_probs=10.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhh
Q 008525 536 ENRVAAQQQKITALRQEVENLLELI 560 (563)
Q Consensus 536 ~~~~~~~~~k~~~~~~~~~~~~~~l 560 (563)
+.+++.+.+.++++..+.+.+...|
T Consensus 149 ~~~~~e~~~e~~~l~~~r~~l~~~i 173 (256)
T 3na7_A 149 ENEVKNIKETQQIIFKKKEDLVEKT 173 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3333444444444444444444433
No 27
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=34.05 E-value=1.2e+02 Score=24.61 Aligned_cols=48 Identities=29% Similarity=0.513 Sum_probs=25.0
Q ss_pred hhHhHHHHHHHHHHHHHHHHhhccceeccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 008525 497 ILPKVEELVAKEKDLQEKVMAKHSTVVDCYEKKTGIRDSENRVAAQQQKITALRQEVENLLELID 561 (563)
Q Consensus 497 ~~~kv~e~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~~~~~~~~~~~~k~~~~~~~~~~~~~~l~ 561 (563)
+..|+.++-...+.+.++| + ..++++..-+.+...++.++..+++.||
T Consensus 5 ~~~kLq~~E~~N~~Le~~v-~----------------~le~~Le~s~~~q~~~~~Elk~~~e~Ld 52 (72)
T 3cve_A 5 SHMKLQEVEIRNKDLEGQL-S----------------EMEQRLEKSQSEQDAFRSNLKTLLEILD 52 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHH-H----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHH-H----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556666666666666655 1 1233444444555555555555555544
No 28
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=33.64 E-value=87 Score=26.54 Aligned_cols=20 Identities=5% Similarity=0.267 Sum_probs=8.6
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q 008525 536 ENRVAAQQQKITALRQEVEN 555 (563)
Q Consensus 536 ~~~~~~~~~k~~~~~~~~~~ 555 (563)
+.+|++++.|++-+..++|.
T Consensus 43 E~Ei~sL~kk~~~lE~eld~ 62 (101)
T 3u1c_A 43 EDDIVQLEKQLRVTEDSRDQ 62 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443
No 29
>2k6w_A Putative uncharacterized protein TTHA1943; PCUA, copper transfer protein, metal transport; NMR {Thermus thermophilus} PDB: 2k6y_A 2k6z_A 2k70_A
Probab=33.54 E-value=1.3e+02 Score=26.23 Aligned_cols=27 Identities=26% Similarity=0.519 Sum_probs=21.6
Q ss_pred CCcceEEEEEcCCCCCCCCeEEEEEEE
Q 008525 108 PAALTFYAVKLPKALGKGDSYTFDVLA 134 (563)
Q Consensus 108 ~~~~~~y~V~Lp~pl~pg~~~tl~v~~ 134 (563)
+.+.+.--..|..||++|+++.+++.+
T Consensus 79 PGG~HvML~gl~~~l~~G~~v~ltL~F 105 (120)
T 2k6w_A 79 PGGYHFMLLGLKRPLKAGEEVELDLLF 105 (120)
T ss_dssp TTTEEEEEEEESSCBCTTCEEEEEEEE
T ss_pred CCceEEEEeCCCCCCCCCCEEEEEEEE
Confidence 455666677889999999999988765
No 30
>2g30_A AP-2 complex subunit beta-1; alpha-helical ARH peptide, platform domain, sandwich domain, endocytosis, adaptor, endocytosis/exocytosis complex; 1.60A {Homo sapiens} SCOP: b.1.10.1 d.105.1.1 PDB: 1e42_A 3h1z_A 3hs9_A 2iv9_A 2iv8_A
Probab=32.60 E-value=1.3e+02 Score=29.75 Aligned_cols=71 Identities=8% Similarity=0.157 Sum_probs=47.0
Q ss_pred EEcCCCeEEEE----EEEEEEeCCCCCeeEEEEEeCCccccceeEEEEeecCCCCcccccccccceeeecCCCCCCcceE
Q 008525 38 IDLTSQIVRIT----STLKVENEGSEPVSEVLLAFPDLQVKDLALLKASPHEGKGKVKSLSASLPVENVKPNGMPAALTF 113 (563)
Q Consensus 38 IDL~~~~vk~t----~~i~vkN~g~~p~~~y~~~l~~~~~~~ls~i~a~~~~~k~k~~~~~~~l~v~~~~~~~~~~~~~~ 113 (563)
++++..+.|.. ..+++.|....|.+.|.+.|...- +.+.+...
T Consensus 44 LeI~g~f~r~~g~i~l~l~~~N~s~~~is~faIQfNkNs------------------------FGL~p~~~--------- 90 (258)
T 2g30_A 44 LEISGTFTHRQGHIYMEMNFTNKALQHMTDFAIQFNKNS------------------------FGVIPSTP--------- 90 (258)
T ss_dssp EEEEEEEEEETTEEEEEEEEEECSSSCBCCCEEEECCBT------------------------TCCEESSC---------
T ss_pred EEEEEEEEEeCCEEEEEEEEecCCccceeeeEEEEcccc------------------------cCcccCcc---------
Confidence 44444445544 889999988888888877764321 11221110
Q ss_pred EEEEcCCCCCCCCeEEEEEEEEeccccccc
Q 008525 114 YAVKLPKALGKGDSYTFDVLAVFAHALRPF 143 (563)
Q Consensus 114 y~V~Lp~pl~pg~~~tl~v~~v~~~~l~P~ 143 (563)
..+|.||+||++.+..|-..++....+.
T Consensus 91 --~~~~~~L~pgqs~~v~lpl~~~~~~~~~ 118 (258)
T 2g30_A 91 --LAIHTPLMPNQSIDVSLPLNTLGPVMKM 118 (258)
T ss_dssp --CCCCSCBCTTCEEEEEEEEESCSCBCCC
T ss_pred --ccCCCccCCCCcEEEEEeeecCCcccCC
Confidence 1367889999999999998887766644
No 31
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=31.10 E-value=1.9e+02 Score=26.70 Aligned_cols=35 Identities=17% Similarity=0.142 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCccccchhHhHHHHHH
Q 008525 467 RKAADGLLKELSKELKLVLSFLQSSSAASQILPKVEELVA 506 (563)
Q Consensus 467 ~k~~~~~~k~~~~~~~~~~~~l~~~~~~~~~~~kv~e~~~ 506 (563)
|+.+..+..++...|.+....++.- +-..+++++.
T Consensus 84 r~~l~kdlee~r~~l~P~~~e~~~~-----~~~~~e~lr~ 118 (185)
T 3r2p_A 84 RQEMSKDLEEVKAKVQPYLDDFQKK-----WQEEMELYRQ 118 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHH-----HHHhHHHHHH
Confidence 4445555555555566666555543 3444444443
No 32
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=29.92 E-value=18 Score=24.05 Aligned_cols=23 Identities=39% Similarity=0.525 Sum_probs=9.9
Q ss_pred HHHHHHhccCccccchhHhHHHHHH
Q 008525 482 KLVLSFLQSSSAASQILPKVEELVA 506 (563)
Q Consensus 482 ~~~~~~l~~~~~~~~~~~kv~e~~~ 506 (563)
..+++.|.++ +.++-.||+||..
T Consensus 5 nallasleae--nkqlkakveella 27 (31)
T 1p9i_A 5 NALLASLEAE--NKQLKAKVEELLA 27 (31)
T ss_dssp HHHHHHHHHH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHH
Confidence 3344444443 4444444444443
No 33
>1uk5_A BAG-family molecular chaperone regulator-3; triple helix bandle, CAIR-1, BIS, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.7.7.1
Probab=29.86 E-value=1e+02 Score=27.01 Aligned_cols=23 Identities=22% Similarity=0.276 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Q 008525 540 AAQQQKITALRQEVENLLELIDE 562 (563)
Q Consensus 540 ~~~~~k~~~~~~~~~~~~~~l~~ 562 (563)
....++|.+++.+|.++|+.||.
T Consensus 81 ~~vR~aRK~aVk~iQ~~l~~LD~ 103 (111)
T 1uk5_A 81 ADVRQARRDGVRKVQTILEKLEQ 103 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 45678889999999999999984
No 34
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=29.01 E-value=2.6e+02 Score=25.49 Aligned_cols=29 Identities=28% Similarity=0.389 Sum_probs=19.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhhcC
Q 008525 535 SENRVAAQQQKITALRQEVENLLELIDEI 563 (563)
Q Consensus 535 ~~~~~~~~~~k~~~~~~~~~~~~~~l~~~ 563 (563)
+..++.....++..+..+++++.+.|..|
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 284 (284)
T 1c1g_A 256 LEDELYAQKLKYKAISEELDHALNDMTSI 284 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 44555666667777777888887777654
No 35
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=28.02 E-value=1.1e+02 Score=25.13 Aligned_cols=60 Identities=12% Similarity=0.281 Sum_probs=0.0
Q ss_pred ccchhHhHHHHHHHHHHHHHHHHhhccceeccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHhhhc
Q 008525 494 ASQILPKVEELVAKEKDLQEKVMAKHSTVVDCYEKKTGIRDSENRVAAQQQKITALRQEVENLLELIDE 562 (563)
Q Consensus 494 ~~~~~~kv~e~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~~~~~~~~~~~~k~~~~~~~~~~~~~~l~~ 562 (563)
|+.+...|++ |+.+.++|.+.+.++-.- +=+-.++|+...++|+++..++++.=-+.++.
T Consensus 1 ~~SllSAVeD--KLRrrl~E~~~q~qaEl~-------sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ 60 (78)
T 3iv1_A 1 GSSLISAVSD--KLRWRMKEEMDRAQAELN-------ALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDK 60 (78)
T ss_dssp CCCHHHHHHH--HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHH--HHHHHHHHHHHHHhHHHH-------HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
No 36
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=27.99 E-value=79 Score=34.26 Aligned_cols=29 Identities=7% Similarity=0.061 Sum_probs=21.6
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 008525 532 IRDSENRVAAQQQKITALRQEVENLLELI 560 (563)
Q Consensus 532 g~~~~~~~~~~~~k~~~~~~~~~~~~~~l 560 (563)
++.+..+|+.+..+..++.++++.++-.|
T Consensus 80 ~~~l~~~i~~le~~~~~~~~~~~~~l~~i 108 (485)
T 3qne_A 80 KEKLSNEKKEIIEKEAEADKNLRSKINQV 108 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 45667777788888888888888877655
No 37
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=26.74 E-value=1.8e+02 Score=23.21 Aligned_cols=54 Identities=17% Similarity=0.198 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccchhHhHHHHHHHHHHHHHHH
Q 008525 461 QACKAARKAADGLLKELSKELKLVLSFLQSSSAASQILPKVEELVAKEKDLQEKV 515 (563)
Q Consensus 461 ~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~~~~~~~~~~kv~e~~~~~~~~~~~~ 515 (563)
..++.+...++..+..|.+.+..|.+.-+.. .+.......++....-+++.+.|
T Consensus 18 ~~~~~~~~~i~~~l~~L~~~~~~l~~~W~G~-a~~aF~~~~~~~~~~~~~~~~~L 71 (98)
T 3gwk_C 18 QKYTAGSQQVTEVLNLLTQEQAVIDENWDGS-TFDSFEAQFNELSPKITEFAQLL 71 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHBCSS-TTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccCcH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456667778889999999999998887765 23334445555555555555553
No 38
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=26.60 E-value=2.4e+02 Score=25.71 Aligned_cols=77 Identities=16% Similarity=0.167 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCccccchhHhHHHHHHHHHHHHHHHHhhccceeccccccccchhhhhhHHHHHHHHH
Q 008525 468 KAADGLLKELSKELKLVLSFLQSSSAASQILPKVEELVAKEKDLQEKVMAKHSTVVDCYEKKTGIRDSENRVAAQQQKIT 547 (563)
Q Consensus 468 k~~~~~~k~~~~~~~~~~~~l~~~~~~~~~~~kv~e~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~~~~~~~~~~~~k~~ 547 (563)
+.+..++.+.+.-|.+..++|..| +.+=.++-+.|.+.. +.+-... .|. +.+-++-+....++.
T Consensus 71 e~l~~~veeA~~~L~eYn~rL~~E---------~~dR~~L~~~L~~~~-~~~~~~l--~e~----e~~leeyK~Kl~rv~ 134 (152)
T 4fla_A 71 ERLSKTVDEACLLLAEYNGRLAAE---------LEDRRQLARMLVEYT-QNQKDVL--SEK----EKKLEEYKQKLARVT 134 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHH-HHHHHHH--HHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHH-HHHHHHH--HHH----HHHHHHHHHHHHHHH
Confidence 445666666777777777777665 333333333333332 1111110 000 111223366667777
Q ss_pred HHHHHHHHHHHhh
Q 008525 548 ALRQEVENLLELI 560 (563)
Q Consensus 548 ~~~~~~~~~~~~l 560 (563)
.++.|+++.+++|
T Consensus 135 ~vkkeL~~hi~sL 147 (152)
T 4fla_A 135 QVRKELKSHIQSL 147 (152)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHhhcC
Confidence 8888888888776
No 39
>1ugo_A BCL2-associated athanogene 5; triple helix bundle, riken structural genomics/proteomics initiative, RSGI, structural genomics, chaperone; NMR {Mus musculus} SCOP: a.7.7.1
Probab=26.28 E-value=1.1e+02 Score=26.29 Aligned_cols=23 Identities=30% Similarity=0.326 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Q 008525 540 AAQQQKITALRQEVENLLELIDE 562 (563)
Q Consensus 540 ~~~~~k~~~~~~~~~~~~~~l~~ 562 (563)
+...++|.+++.+|.++|+.||.
T Consensus 69 ~~iR~~RK~~Vk~iQ~~l~~LD~ 91 (99)
T 1ugo_A 69 GDIQQARKRAAQETERLLKELEQ 91 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 55678889999999999999984
No 40
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=24.74 E-value=1.5e+02 Score=24.82 Aligned_cols=9 Identities=33% Similarity=0.232 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 008525 504 LVAKEKDLQ 512 (563)
Q Consensus 504 ~~~~~~~~~ 512 (563)
|+++-+.+.
T Consensus 49 L~kKiq~lE 57 (101)
T 3u59_A 49 LQKKLKGTE 57 (101)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 41
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=23.82 E-value=82 Score=33.66 Aligned_cols=29 Identities=14% Similarity=0.347 Sum_probs=21.2
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 008525 532 IRDSENRVAAQQQKITALRQEVENLLELI 560 (563)
Q Consensus 532 g~~~~~~~~~~~~k~~~~~~~~~~~~~~l 560 (563)
++.+.++|+.+..+..++.++++.++-.|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 106 (455)
T 2dq0_A 78 SREIVKRIGELENEVEELKKKIDYYLWRL 106 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 44566677777788888888888877655
No 42
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=23.61 E-value=76 Score=24.04 Aligned_cols=25 Identities=8% Similarity=0.270 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhc
Q 008525 538 RVAAQQQKITALRQEVENLLELIDE 562 (563)
Q Consensus 538 ~~~~~~~k~~~~~~~~~~~~~~l~~ 562 (563)
++..+++..++|+.|++.|.+.++|
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~e 44 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKK 44 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345666666677777666666554
No 43
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=23.59 E-value=2e+02 Score=23.21 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=15.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhh
Q 008525 536 ENRVAAQQQKITALRQEVENLLELI 560 (563)
Q Consensus 536 ~~~~~~~~~k~~~~~~~~~~~~~~l 560 (563)
+.+|.++++|+..+..++|..-+.|
T Consensus 40 E~ev~~L~kKiq~lE~eld~~ee~l 64 (81)
T 1ic2_A 40 EDELVALQKKLKGTEDELDKYSESL 64 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666667777766666666554444
No 44
>1m62_A BAG-family molecular chaperone regulator-4; BAG domain, SODD, silencer of death domains, HSP70/HSC70 CO-chaperone; NMR {Homo sapiens} SCOP: a.7.7.1
Probab=23.01 E-value=1.7e+02 Score=24.44 Aligned_cols=23 Identities=13% Similarity=0.232 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Q 008525 540 AAQQQKITALRQEVENLLELIDE 562 (563)
Q Consensus 540 ~~~~~k~~~~~~~~~~~~~~l~~ 562 (563)
....++|.+++.+|.++++.||.
T Consensus 62 ~~~R~~RK~~Vk~iQ~~l~~LD~ 84 (87)
T 1m62_A 62 DSVRQARKEAVCKIQAILEKLEK 84 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677889999999999999984
No 45
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=22.62 E-value=1.1e+02 Score=23.14 Aligned_cols=34 Identities=9% Similarity=0.070 Sum_probs=26.2
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 008525 457 TGDVQACKAARKAADGLLKELSKELKLVLSFLQS 490 (563)
Q Consensus 457 ~~d~~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~ 490 (563)
.-|+.+++.-...+.+++.+|.+++.++.++|..
T Consensus 18 ~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 18 NPEIELLRLELAEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4577777777777888888888888888887763
No 46
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=22.55 E-value=4e+02 Score=23.48 Aligned_cols=52 Identities=10% Similarity=0.070 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccchhHhHHHHHHHHHHHHHH
Q 008525 461 QACKAARKAADGLLKELSKELKLVLSFLQSSSAASQILPKVEELVAKEKDLQEK 514 (563)
Q Consensus 461 ~~~~~~~k~~~~~~k~~~~~~~~~~~~l~~~~~~~~~~~kv~e~~~~~~~~~~~ 514 (563)
+..-+.=+.++++|..|-++=..--.+.|.. +-.+...+.+...+-.++-++
T Consensus 5 ~~V~s~l~~LEaeyq~L~~kE~qrynqeka~--AE~A~~~L~~~~~m~~~i~ek 56 (119)
T 2avr_X 5 ASLVGELQALDAEYQNLANQEEARFNEERAQ--ADAARQALAQNEQVYNELSQR 56 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 3333334445555555544333333333432 222333333333334444444
No 47
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=22.41 E-value=1.6e+02 Score=35.05 Aligned_cols=10 Identities=10% Similarity=0.431 Sum_probs=6.9
Q ss_pred CCcEEEEEec
Q 008525 405 GRPVVVLQKT 414 (563)
Q Consensus 405 GRpvVvl~~~ 414 (563)
|++.|-++..
T Consensus 745 G~TKVF~r~g 754 (1080)
T 2dfs_A 745 GKTKIFFRAG 754 (1080)
T ss_dssp CSSEEEECTT
T ss_pred ccccchhccc
Confidence 7777777653
No 48
>2xdt_A Endoplasmic reticulum aminopeptidase 1; glycoprotein, metal-binding, metalloprotease, protease, hydrolase, adaptive immunity; HET: NAG; 2.70A {Homo sapiens} PDB: 2yd0_A* 3qnf_A* 3mdj_A*
Probab=22.33 E-value=3.4e+02 Score=31.23 Aligned_cols=94 Identities=21% Similarity=0.234 Sum_probs=53.9
Q ss_pred CceEEeeEEE--EEEcCCCeEEEEEEEEEEeCCCCCeeEEEEEeCCccccceeEEEEeecCCCCccccccccc--ceeee
Q 008525 27 SDLILSKVDR--RIDLTSQIVRITSTLKVENEGSEPVSEVLLAFPDLQVKDLALLKASPHEGKGKVKSLSASL--PVENV 102 (563)
Q Consensus 27 ~~~~n~~v~R--tIDL~~~~vk~t~~i~vkN~g~~p~~~y~~~l~~~~~~~ls~i~a~~~~~k~k~~~~~~~l--~v~~~ 102 (563)
..++-.++.= .+|+++....-+++|+++.. ++.+...+.. .++..-++.+.+..++ .+ .+..+
T Consensus 11 ~~~~p~hY~l~L~~d~~~~~f~G~v~I~~~~~--~~~~~I~L~~-----~~l~I~~v~v~~~~~~------~~~~~~~~~ 77 (897)
T 2xdt_A 11 EYVIPVHYDLLIHANLTTLTFWGTTKVEITAS--QPTSTIILHS-----HHLQISRATLRKGAGE------RLSEEPLQV 77 (897)
T ss_dssp SSEEEEEEEEEEEEETTTTEEEEEEEEEEEES--SCEEEEEEEC-----SSCEEEEEEEEEC----------CEEEECEE
T ss_pred CCcEeeEEEEEEEEecCCCeEEEEEEEEEEEE--cCCCEEEEEe-----CCCEEEEEEEEecCCc------cccccccee
Confidence 3444444443 35777777777888888764 3566665553 3344444544321111 11 11111
Q ss_pred cCCCCCCcceEEEEEcCCCCCCCCeEEEEEEEEe
Q 008525 103 KPNGMPAALTFYAVKLPKALGKGDSYTFDVLAVF 136 (563)
Q Consensus 103 ~~~~~~~~~~~y~V~Lp~pl~pg~~~tl~v~~v~ 136 (563)
... .+...+.|.||.||.||++.+|.|.|.-
T Consensus 78 ~~~---~~~~~l~i~l~~~L~~g~~~~L~i~y~g 108 (897)
T 2xdt_A 78 LEH---PRQEQIALLAPEPLLVGLPYTVVIHYAG 108 (897)
T ss_dssp EEE---TTTTEEEEEEEEEECTTCCEEEEEEEEE
T ss_pred EEc---CCCcEEEEEeCCccCCCCEEEEEEEEEE
Confidence 111 1124789999999999999999998774
No 49
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=21.91 E-value=1.9e+02 Score=38.46 Aligned_cols=22 Identities=9% Similarity=0.034 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHhccC
Q 008525 470 ADGLLKELSKELKLVLSFLQSS 491 (563)
Q Consensus 470 ~~~~~k~~~~~~~~~~~~l~~~ 491 (563)
.+.++++.+++-.+++.++..+
T Consensus 1946 ~~~~L~~k~~ea~~~l~~i~~~ 1967 (3245)
T 3vkg_A 1946 KNRELDVKNEQANQKLKQMVQD 1967 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555666666553
No 50
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=21.83 E-value=86 Score=21.04 Aligned_cols=19 Identities=42% Similarity=0.662 Sum_probs=10.4
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 008525 538 RVAAQQQKITALRQEVENL 556 (563)
Q Consensus 538 ~~~~~~~k~~~~~~~~~~~ 556 (563)
||+.++|.+.+|+.||..|
T Consensus 3 eiaalkqeiaalkkeiaal 21 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAAL 21 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555543
No 51
>3g67_A Methyl-accepting chemotaxis protein; four-helix bundle, signaling protein; 2.17A {Thermotoga maritima} PDB: 3g6b_A 3ur1_C
Probab=21.68 E-value=2.2e+02 Score=27.24 Aligned_cols=86 Identities=10% Similarity=0.211 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHhccCccccchhHhHHHHHHHHHHHHHHHHhhccceeccccccccc-hhhhhhHHHHHHHHHHH
Q 008525 471 DGLLKELSKELKLVLSFLQSSSAASQILPKVEELVAKEKDLQEKVMAKHSTVVDCYEKKTGI-RDSENRVAAQQQKITAL 549 (563)
Q Consensus 471 ~~~~k~~~~~~~~~~~~l~~~~~~~~~~~kv~e~~~~~~~~~~~~~~~~~~~~~~~e~~~~g-~~~~~~~~~~~~k~~~~ 549 (563)
-.+-++.+++|..++..++.. .....+.++++...-....+.+ ......+ +..... ..+...+..+.....+.
T Consensus 125 a~~t~~~~~~I~~~i~~i~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~i~~~~~~~~~~~~e~ 198 (213)
T 3g67_A 125 SNETNEVTKQIVEKAREILES--SQRSLENLEFMANLFETVGKTL-QNMVRFM---ENNVKLLQEVRNSLDTSKESLSEK 198 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH-HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH-HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555566666555543 3333344433333333333322 2111111 222111 14555556666677777
Q ss_pred HHHHHHHHHhhhc
Q 008525 550 RQEVENLLELIDE 562 (563)
Q Consensus 550 ~~~~~~~~~~l~~ 562 (563)
...|+++.+.++|
T Consensus 199 s~~i~~i~~~iee 211 (213)
T 3g67_A 199 SAEIDSATKVLEE 211 (213)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 7777777777765
No 52
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*
Probab=21.66 E-value=1e+03 Score=27.98 Aligned_cols=86 Identities=13% Similarity=0.130 Sum_probs=55.2
Q ss_pred EEEEEEEEEEeCCCCC-eeEEEEEeCCccccceeEEEEeecCCCCcccccccccceeeecCCCCCCcceEEEEEcCCC-C
Q 008525 45 VRITSTLKVENEGSEP-VSEVLLAFPDLQVKDLALLKASPHEGKGKVKSLSASLPVENVKPNGMPAALTFYAVKLPKA-L 122 (563)
Q Consensus 45 vk~t~~i~vkN~g~~p-~~~y~~~l~~~~~~~ls~i~a~~~~~k~k~~~~~~~l~v~~~~~~~~~~~~~~y~V~Lp~p-l 122 (563)
-+.+.+++++|.|.++ .....+.+|+. |.|.++.... +... .....+.++..... ..+.....-.|..| +
T Consensus 780 ~~l~l~v~v~N~gEdAy~t~l~~~~p~~----l~~~~v~~~~-~~~~-~~~~~~~C~~~~~~--~~~~~~~~C~lg~P~~ 851 (1095)
T 3k6s_A 780 LELNAEVMVWNDGEDSYGTTITFSHPAG----LSYRYVAEGQ-KQGQ-LRSLHLTCDSAPVG--SQGTWSTSCRINHLIF 851 (1095)
T ss_dssp CEEEEEEEECCCSSCBSSCEEEEEECTT----EEEECCCCCT-TCCS-SCCCCCEEEEEECS--SSSCEEEEEECTTSCB
T ss_pred CEEEEEEEEEeCCCCcccceEEEEecCC----Cceeeeeccc-cccc-cCCccceeecCCcc--cCcceeEEeccCCccc
Confidence 3678899999999776 67788998876 6676543211 1100 00124556553211 12235677889999 5
Q ss_pred CCCCeEEEEEEEEecc
Q 008525 123 GKGDSYTFDVLAVFAH 138 (563)
Q Consensus 123 ~pg~~~tl~v~~v~~~ 138 (563)
+.|+++++.|.+-..+
T Consensus 852 ~~~~~~~f~~~f~~~~ 867 (1095)
T 3k6s_A 852 RGGAQITFLATFDVSP 867 (1095)
T ss_dssp CTTCCEEEEEEEEECT
T ss_pred cCCCEEEEEEEEeCcc
Confidence 9999999999887654
No 53
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=21.41 E-value=4.4e+02 Score=28.45 Aligned_cols=29 Identities=10% Similarity=-0.009 Sum_probs=22.2
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 008525 532 IRDSENRVAAQQQKITALRQEVENLLELI 560 (563)
Q Consensus 532 g~~~~~~~~~~~~k~~~~~~~~~~~~~~l 560 (563)
++.+.++|+.+..+..++.++++.++-.|
T Consensus 125 ~~~l~~~i~~l~~~~~~~~~~l~~~l~~i 153 (501)
T 1wle_A 125 GREIRKQLTLLYPKEAQLEEQFYLRALRL 153 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 44567777888888888888888887665
No 54
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=20.91 E-value=1.5e+02 Score=31.22 Aligned_cols=30 Identities=13% Similarity=0.366 Sum_probs=23.4
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 008525 531 GIRDSENRVAAQQQKITALRQEVENLLELI 560 (563)
Q Consensus 531 ~g~~~~~~~~~~~~k~~~~~~~~~~~~~~l 560 (563)
.++.+..+|+.+.++..++.++++.++-.|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 105 (425)
T 2dq3_A 76 RVKELKEEIDRLEEELRKVEEELKNTLLWI 105 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 355777888888888888888888887665
No 55
>1m7k_A Silencer of death domains; three helix bundle, chaperone; NMR {Homo sapiens} SCOP: a.7.7.1
Probab=20.87 E-value=2e+02 Score=24.65 Aligned_cols=23 Identities=13% Similarity=0.232 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Q 008525 540 AAQQQKITALRQEVENLLELIDE 562 (563)
Q Consensus 540 ~~~~~k~~~~~~~~~~~~~~l~~ 562 (563)
....++|.+++.+|.++++.||.
T Consensus 75 ~~vR~~RK~~Vk~iQ~~l~~LD~ 97 (99)
T 1m7k_A 75 DSVRQARKEAVCKIQAILEKLEK 97 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 45667889999999999999984
No 56
>3ije_A Integrin alpha-V; integrin structure, activation, EGF domains, FLIM, cell SIGN cell adhesion, cleavage on PAIR of basic residues; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 4g1e_A* 4g1m_A* 1jv2_A* 1l5g_A* 1m1x_A* 1u8c_A*
Probab=20.72 E-value=4.6e+02 Score=30.59 Aligned_cols=86 Identities=13% Similarity=0.144 Sum_probs=56.2
Q ss_pred EEcCCCeEEEEEEEEEEeCCCCC-eeEEEEEeCCccccceeEEEEeecCCCCcccccccccceeeecCCCCCCcceEEEE
Q 008525 38 IDLTSQIVRITSTLKVENEGSEP-VSEVLLAFPDLQVKDLALLKASPHEGKGKVKSLSASLPVENVKPNGMPAALTFYAV 116 (563)
Q Consensus 38 IDL~~~~vk~t~~i~vkN~g~~p-~~~y~~~l~~~~~~~ls~i~a~~~~~k~k~~~~~~~l~v~~~~~~~~~~~~~~y~V 116 (563)
+=+++. -+.+.+++++|.|..+ .....+.+|+. |.|.++..... . ...+.++.... .......-
T Consensus 617 ~~vg~~-~~l~l~v~v~N~gE~Ay~t~l~~~~p~~----l~~~~v~~~~~---~---~~~~~C~~~~~----n~~~~~~C 681 (967)
T 3ije_A 617 IYIGDD-NPLTLIVKAQNQGEGAYEAELIVSIPLQ----ADFIGVVRNNE---A---LARLSCAFKTE----NQTRQVVC 681 (967)
T ss_dssp EETTSC-EEEEEEEEEEECSSCEESCEEEEECCTT----EEEEEECCSCT---T---SBCCEEEEECS----SSCCEEEE
T ss_pred EEecCC-cEEEEEEEEEeCCCCcccceEEEEeCCC----CCeeeeecccC---C---cccceeecCCC----CCceEEEe
Confidence 334433 4788999999998766 56778888865 67765542211 1 12355654221 11235677
Q ss_pred EcCCCCCCCCeEEEEEEEEecc
Q 008525 117 KLPKALGKGDSYTFDVLAVFAH 138 (563)
Q Consensus 117 ~Lp~pl~pg~~~tl~v~~v~~~ 138 (563)
.|..|++.|+++++.+.+-..+
T Consensus 682 ~lgnP~~~~~~v~f~l~f~~~~ 703 (967)
T 3ije_A 682 DLGNPMKAGTQLLAGLRFSVHQ 703 (967)
T ss_dssp ECCSEECTTCEEEEEEEEEECC
T ss_pred eCCCCcCCCCEEEEEEEEeccc
Confidence 8999999999999999887553
No 57
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=20.63 E-value=1.7e+02 Score=31.59 Aligned_cols=29 Identities=21% Similarity=0.334 Sum_probs=23.3
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 008525 532 IRDSENRVAAQQQKITALRQEVENLLELI 560 (563)
Q Consensus 532 g~~~~~~~~~~~~k~~~~~~~~~~~~~~l 560 (563)
++.+..+|+.+..+..++.++++.++-.|
T Consensus 113 ~~~l~~~i~~le~~~~~~~~~~~~~l~~i 141 (484)
T 3lss_A 113 SKDLSDQVAGLAKEAQQLEEERDKLMLNV 141 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 56777888888888888888888887665
No 58
>4g1a_A AQ-C16C19 peptide; helical bundles, metallopeptide complexes, polynuclear metal CD(II), SELF-assembly, metal binding protein; 1.85A {Synthetic construct}
Probab=20.29 E-value=43 Score=22.36 Aligned_cols=22 Identities=36% Similarity=0.460 Sum_probs=14.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHH
Q 008525 535 SENRVAAQQQKITALRQEVENL 556 (563)
Q Consensus 535 ~~~~~~~~~~k~~~~~~~~~~~ 556 (563)
.|..|+.+.||-.+|.++|..|
T Consensus 5 leqkiaaleqkcaaceqkiaal 26 (32)
T 4g1a_A 5 LEQKIAALEQKCAACEQKIAAL 26 (32)
T ss_dssp HHHHHHHHHHHTSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677777777777777654
No 59
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=20.18 E-value=2.1e+02 Score=30.80 Aligned_cols=25 Identities=16% Similarity=0.300 Sum_probs=16.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhh
Q 008525 536 ENRVAAQQQKITALRQEVENLLELI 560 (563)
Q Consensus 536 ~~~~~~~~~k~~~~~~~~~~~~~~l 560 (563)
...|..++.++++++++|..|-..+
T Consensus 167 ~~~i~~L~~~~~~l~~ki~~l~~~~ 191 (464)
T 1m1j_B 167 PSSLRVLRAVIDSLHKKIQKLENAI 191 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667777777777777665544
No 60
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=20.07 E-value=2.3e+02 Score=30.03 Aligned_cols=26 Identities=23% Similarity=0.271 Sum_probs=18.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhh
Q 008525 535 SENRVAAQQQKITALRQEVENLLELI 560 (563)
Q Consensus 535 ~~~~~~~~~~k~~~~~~~~~~~~~~l 560 (563)
++.-+.+..+|+++|++++..|....
T Consensus 110 l~~~~~~~~~~i~~L~~~v~~l~~~~ 135 (411)
T 3ghg_C 110 LQEIYNSNNQKIVNLKEKVAQLEAQC 135 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44445667778888888888776543
No 61
>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium}
Probab=20.01 E-value=2.5e+02 Score=29.60 Aligned_cols=99 Identities=12% Similarity=0.069 Sum_probs=54.7
Q ss_pred HHHHHHHhhhcccCChHHHHH-HH---HHHHHHHHHHHHHHHHHHHHhccCccccchhHhHHHHHHHHHHHHHHHHhhcc
Q 008525 445 DKLEASLRDLSRTGDVQACKA-AR---KAADGLLKELSKELKLVLSFLQSSSAASQILPKVEELVAKEKDLQEKVMAKHS 520 (563)
Q Consensus 445 ~~~~~~~~dls~~~d~~~~~~-~~---k~~~~~~k~~~~~~~~~~~~l~~~~~~~~~~~kv~e~~~~~~~~~~~~~~~~~ 520 (563)
+.|-.|+.+++-..+-.+... .. +.+-..++...+.|..+...+.. +|...|.++..+=+++.++ .+..
T Consensus 47 ~~ff~alq~la~~P~~~~~R~~vl~~a~~La~~~n~~~~~L~~~~~~~n~-----~i~~~V~~iN~l~~qIa~L--N~qI 119 (463)
T 2d4y_A 47 QSFFTSLQTLVSNAEDPAARQALIGKAEGLVNQFKTTDQYLRDQDKQVNI-----AIGSSVAQINNYAKQIANL--NDQI 119 (463)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH--HHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH--HHHH
Confidence 445556688876654443322 11 12555566666666666665554 4888888888888888875 4444
Q ss_pred ceeccccccccchhhhhhHHHHHHHHHHHHHHHHHHH
Q 008525 521 TVVDCYEKKTGIRDSENRVAAQQQKITALRQEVENLL 557 (563)
Q Consensus 521 ~~~~~~e~~~~g~~~~~~~~~~~~k~~~~~~~~~~~~ 557 (563)
..+ |-.-.|. -- ..+..+|+.|..|+-.++
T Consensus 120 ~~~---~~~~~g~-~~---ndLlDqRD~ll~eLS~~v 149 (463)
T 2d4y_A 120 SRM---TGVGAGA-SP---NDLLDQRDQLVSELNKIV 149 (463)
T ss_dssp HHH---C------------CHHHHHHHHHHHHHHHHS
T ss_pred HHh---hccCCCC-Cc---hHhHHHHHHHHHHHHhhc
Confidence 332 2110232 11 235667777777776664
Done!