BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008526
(563 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4AP5|A Chain A, Crystal Structure Of Human Pofut2
pdb|4AP5|B Chain B, Crystal Structure Of Human Pofut2
Length = 408
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 57/127 (44%), Gaps = 20/127 (15%)
Query: 404 LGSNFIALHFRRHGFLKFCNAKKPSCFYPIPQAADCITRLAERAKAPVIYLSTDAAESET 463
LG ++ +H RR F+ PS + A I L + + ++++TDA E
Sbjct: 263 LGGPYLGVHLRRKDFIWGHRQDVPS----LEGAVRKIRSLMKTHRLDKVFVATDAVRKEY 318
Query: 464 SLLQSLVVLNGKTIALVKRPPRNSAEKWDSLLYRHHLEDDSQVEAMLDKTICAMSNVFIG 523
L+ L+ +V+ P W+ L L D V A++D+ ICA + FIG
Sbjct: 319 EELKKLLP------EMVRFEP-----TWEEL----ELYKDGGV-AIIDQWICAHARFFIG 362
Query: 524 ASGSTFT 530
S STF+
Sbjct: 363 TSVSTFS 369
>pdb|4AP6|A Chain A, Crystal Structure Of Human Pofut2 E54a Mutant In Complex
With Gdp- Fucose
pdb|4AP6|B Chain B, Crystal Structure Of Human Pofut2 E54a Mutant In Complex
With Gdp- Fucose
pdb|4AP6|C Chain C, Crystal Structure Of Human Pofut2 E54a Mutant In Complex
With Gdp- Fucose
pdb|4AP6|D Chain D, Crystal Structure Of Human Pofut2 E54a Mutant In Complex
With Gdp- Fucose
Length = 422
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 57/127 (44%), Gaps = 20/127 (15%)
Query: 404 LGSNFIALHFRRHGFLKFCNAKKPSCFYPIPQAADCITRLAERAKAPVIYLSTDAAESET 463
LG ++ +H RR F+ PS + A I L + + ++++TDA E
Sbjct: 277 LGGPYLGVHLRRKDFIWGHRQDVPS----LEGAVRKIRSLMKTHRLDKVFVATDAVRKEY 332
Query: 464 SLLQSLVVLNGKTIALVKRPPRNSAEKWDSLLYRHHLEDDSQVEAMLDKTICAMSNVFIG 523
L+ L+ +V+ P W+ L L D V A++D+ ICA + FIG
Sbjct: 333 EELKKLLP------EMVRFEP-----TWEEL----ELYKDGGV-AIIDQWICAHARFFIG 376
Query: 524 ASGSTFT 530
S STF+
Sbjct: 377 TSVSTFS 383
>pdb|3D53|A Chain A, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii
pdb|3D53|B Chain B, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii
pdb|3D53|C Chain C, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii
pdb|3D53|D Chain D, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii
pdb|3D53|E Chain E, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii
pdb|3D53|F Chain F, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii
pdb|3EMJ|A Chain A, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii (P21 Form)
pdb|3EMJ|B Chain B, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii (P21 Form)
pdb|3EMJ|C Chain C, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii (P21 Form)
pdb|3EMJ|D Chain D, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii (P21 Form)
pdb|3EMJ|E Chain E, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii (P21 Form)
pdb|3EMJ|F Chain F, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii (P21 Form)
pdb|3EMJ|G Chain G, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii (P21 Form)
pdb|3EMJ|H Chain H, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii (P21 Form)
pdb|3EMJ|I Chain I, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii (P21 Form)
pdb|3EMJ|J Chain J, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii (P21 Form)
pdb|3EMJ|K Chain K, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii (P21 Form)
pdb|3EMJ|L Chain L, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii (P21 Form)
Length = 173
Score = 33.1 bits (74), Expect = 0.39, Method: Composition-based stats.
Identities = 11/48 (22%), Positives = 31/48 (64%)
Query: 240 AALLNRVLVIPSSKFDYQYSRVLDIEHINDCLGRKVVVSFENFMEMEK 287
+ L +++ +P+SK D + + +++ + + L +++V FE++ ++EK
Sbjct: 100 SGLDEKIIAVPTSKLDITFDHIKELDDLCEMLKKRIVHFFEHYKDLEK 147
>pdb|1QEZ|A Chain A, Sulfolobus Acidocaldarius Inorganic Pyrophosphatase: An
Archael Pyrophosphatase.
pdb|1QEZ|B Chain B, Sulfolobus Acidocaldarius Inorganic Pyrophosphatase: An
Archael Pyrophosphatase.
pdb|1QEZ|C Chain C, Sulfolobus Acidocaldarius Inorganic Pyrophosphatase: An
Archael Pyrophosphatase.
pdb|1QEZ|D Chain D, Sulfolobus Acidocaldarius Inorganic Pyrophosphatase: An
Archael Pyrophosphatase.
pdb|1QEZ|E Chain E, Sulfolobus Acidocaldarius Inorganic Pyrophosphatase: An
Archael Pyrophosphatase.
pdb|1QEZ|F Chain F, Sulfolobus Acidocaldarius Inorganic Pyrophosphatase: An
Archael Pyrophosphatase
Length = 173
Score = 30.0 bits (66), Expect = 4.0, Method: Composition-based stats.
Identities = 12/42 (28%), Positives = 23/42 (54%)
Query: 245 RVLVIPSSKFDYQYSRVLDIEHINDCLGRKVVVSFENFMEME 286
+++ +P K D +S + DI + K+V FE++ E+E
Sbjct: 101 KIVAVPKDKTDPSFSNIKDINDLPQATKNKIVHFFEHYKELE 142
>pdb|3I4Q|A Chain A, Structure Of A Putative Inorganic Pyrophosphatase From The
Oil- Degrading Bacterium Oleispira Antarctica
Length = 176
Score = 29.3 bits (64), Expect = 5.4, Method: Composition-based stats.
Identities = 12/43 (27%), Positives = 25/43 (58%)
Query: 245 RVLVIPSSKFDYQYSRVLDIEHINDCLGRKVVVSFENFMEMEK 287
++L +P K Y+ + DI+ + L ++V FE++ ++EK
Sbjct: 106 KLLAVPHEKLTQLYNDIHDIDDVPQLLKDQIVHFFEHYKDLEK 148
>pdb|2EIP|A Chain A, Inorganic Pyrophosphatase
pdb|2EIP|B Chain B, Inorganic Pyrophosphatase
pdb|1IPW|A Chain A, Inorganic Pyrophosphatase From Escherichia Coli With Three
Magnesium Ions
pdb|1IPW|B Chain B, Inorganic Pyrophosphatase From Escherichia Coli With Three
Magnesium Ions
pdb|1JFD|A Chain A, Structure Of Inorganic Pyrophosphatase
pdb|1JFD|B Chain B, Structure Of Inorganic Pyrophosphatase
pdb|1FAJ|A Chain A, Inorganic Pyrophosphatase
pdb|1INO|A Chain A, Recombinant Inorganic Pyrophosphatase From Escherichia
Coli
Length = 175
Score = 28.9 bits (63), Expect = 7.0, Method: Composition-based stats.
Identities = 10/43 (23%), Positives = 25/43 (58%)
Query: 245 RVLVIPSSKFDYQYSRVLDIEHINDCLGRKVVVSFENFMEMEK 287
+++ +P SK +Y + D+ + + L ++ FE++ ++EK
Sbjct: 104 KLVAVPHSKLSKEYDHIKDVNDLPELLKAQIAHFFEHYKDLEK 146
>pdb|2AU7|A Chain A, The R43q Active Site Variant Of E.Coli Inorganic
Pyrophosphatase
Length = 175
Score = 28.9 bits (63), Expect = 7.0, Method: Composition-based stats.
Identities = 10/43 (23%), Positives = 25/43 (58%)
Query: 245 RVLVIPSSKFDYQYSRVLDIEHINDCLGRKVVVSFENFMEMEK 287
+++ +P SK +Y + D+ + + L ++ FE++ ++EK
Sbjct: 104 KLVAVPHSKLSKEYDHIKDVNDLPELLKAQIAHFFEHYKDLEK 146
>pdb|1MJZ|A Chain A, Structure Of Inorganic Pyrophosphatase Mutant D97n
Length = 175
Score = 28.9 bits (63), Expect = 7.2, Method: Composition-based stats.
Identities = 10/43 (23%), Positives = 25/43 (58%)
Query: 245 RVLVIPSSKFDYQYSRVLDIEHINDCLGRKVVVSFENFMEMEK 287
+++ +P SK +Y + D+ + + L ++ FE++ ++EK
Sbjct: 104 KLVAVPHSKLSKEYDHIKDVNDLPELLKAQIAHFFEHYKDLEK 146
>pdb|1MJW|A Chain A, Structure Of Inorganic Pyrophosphatase Mutant D42n
pdb|1MJW|B Chain B, Structure Of Inorganic Pyrophosphatase Mutant D42n
Length = 175
Score = 28.9 bits (63), Expect = 7.2, Method: Composition-based stats.
Identities = 10/43 (23%), Positives = 25/43 (58%)
Query: 245 RVLVIPSSKFDYQYSRVLDIEHINDCLGRKVVVSFENFMEMEK 287
+++ +P SK +Y + D+ + + L ++ FE++ ++EK
Sbjct: 104 KLVAVPHSKLSKEYDHIKDVNDLPELLKAQIAHFFEHYKDLEK 146
>pdb|1MJX|A Chain A, Structure Of Inorganic Pyrophosphatase Mutant D65n
pdb|1MJX|B Chain B, Structure Of Inorganic Pyrophosphatase Mutant D65n
Length = 175
Score = 28.9 bits (63), Expect = 7.2, Method: Composition-based stats.
Identities = 10/43 (23%), Positives = 25/43 (58%)
Query: 245 RVLVIPSSKFDYQYSRVLDIEHINDCLGRKVVVSFENFMEMEK 287
+++ +P SK +Y + D+ + + L ++ FE++ ++EK
Sbjct: 104 KLVAVPHSKLSKEYDHIKDVNDLPELLKAQIAHFFEHYKDLEK 146
>pdb|1OBW|A Chain A, Structure Of Inorganic Pyrophosphatase
pdb|1OBW|B Chain B, Structure Of Inorganic Pyrophosphatase
pdb|1OBW|C Chain C, Structure Of Inorganic Pyrophosphatase
pdb|1I6T|A Chain A, Structure Of Inorganic Pyrophosphatase
pdb|1I40|A Chain A, Structure Of Inorganic Pyrophosphatase
pdb|2AU6|A Chain A, Crystal Structure Of Catalytic Intermediate Of Inorganic
Pyrophosphatase
pdb|2AU8|A Chain A, Catalytic Intermediate Structure Of Inorganic
Pyrophosphatase
pdb|2AU9|A Chain A, Inorganic Pyrophosphatase Complexed With Substrate
pdb|2AUU|A Chain A, Inorganic Pyrophosphatase Complexed With Magnesium
Pyrophosphate And Fluoride
pdb|1IGP|A Chain A, X-Ray Crystallographic Studies Of Recombinant Inorganic
Pyrophosphatase From Escherichia Coli
Length = 175
Score = 28.9 bits (63), Expect = 7.4, Method: Composition-based stats.
Identities = 10/43 (23%), Positives = 25/43 (58%)
Query: 245 RVLVIPSSKFDYQYSRVLDIEHINDCLGRKVVVSFENFMEMEK 287
+++ +P SK +Y + D+ + + L ++ FE++ ++EK
Sbjct: 104 KLVAVPHSKLSKEYDHIKDVNDLPELLKAQIAHFFEHYKDLEK 146
>pdb|1MJY|A Chain A, Structure Of Inorganic Pyrophosphatase Mutant D70n
pdb|1MJY|B Chain B, Structure Of Inorganic Pyrophosphatase Mutant D70n
Length = 175
Score = 28.9 bits (63), Expect = 7.4, Method: Composition-based stats.
Identities = 10/43 (23%), Positives = 25/43 (58%)
Query: 245 RVLVIPSSKFDYQYSRVLDIEHINDCLGRKVVVSFENFMEMEK 287
+++ +P SK +Y + D+ + + L ++ FE++ ++EK
Sbjct: 104 KLVAVPHSKLSKEYDHIKDVNDLPELLKAQIAHFFEHYKDLEK 146
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,621,908
Number of Sequences: 62578
Number of extensions: 609227
Number of successful extensions: 1412
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1402
Number of HSP's gapped (non-prelim): 12
length of query: 563
length of database: 14,973,337
effective HSP length: 104
effective length of query: 459
effective length of database: 8,465,225
effective search space: 3885538275
effective search space used: 3885538275
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)