Query 008526
Match_columns 563
No_of_seqs 144 out of 175
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 05:37:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008526.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008526hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zy2_A Putative GDP-fucose pro 100.0 1.8E-90 6.1E-95 711.0 12.1 287 207-549 3-359 (362)
2 4ap5_A GDP-fucose protein O-fu 100.0 2.2E-59 7.5E-64 482.9 14.2 304 213-557 22-397 (408)
3 2hhc_A NODZ, nodulation fucosy 99.2 6.4E-11 2.2E-15 118.2 9.7 141 384-536 146-296 (330)
4 2de0_X Alpha-(1,6)-fucosyltran 99.1 4.1E-09 1.4E-13 113.9 20.5 144 383-541 271-421 (526)
5 3v7q_A Probable ribosomal prot 56.3 14 0.00049 31.2 4.9 44 438-483 25-68 (101)
6 3on1_A BH2414 protein; structu 53.8 15 0.00052 30.9 4.7 44 438-483 24-67 (101)
7 3j21_Z 50S ribosomal protein L 48.6 34 0.0012 28.6 6.0 43 438-482 21-63 (99)
8 4a18_G RPL30; ribosome, eukary 45.6 27 0.00093 29.6 5.0 42 438-481 28-69 (104)
9 3u5e_c L32, RP73, YL38, 60S ri 43.3 28 0.00096 29.6 4.7 42 438-481 28-69 (105)
10 3iz5_f 60S ribosomal protein L 41.9 38 0.0013 29.5 5.4 43 438-482 32-74 (112)
11 2hhc_A NODZ, nodulation fucosy 40.9 12 0.00042 36.9 2.4 34 215-251 6-40 (330)
12 1w41_A 50S ribosomal protein L 38.7 42 0.0014 28.1 5.1 42 438-481 22-63 (101)
13 3v7e_A Ribosome-associated pro 37.0 25 0.00086 28.7 3.3 44 438-483 17-60 (82)
14 2lbw_A H/ACA ribonucleoprotein 37.0 47 0.0016 29.0 5.3 44 438-483 26-70 (121)
15 3cpq_A 50S ribosomal protein L 35.7 40 0.0014 28.9 4.5 43 438-482 27-69 (110)
16 3tov_A Glycosyl transferase fa 35.3 1.3E+02 0.0044 29.8 8.8 72 388-469 164-238 (349)
17 1vq8_F 50S ribosomal protein L 31.6 51 0.0017 28.6 4.5 44 438-483 35-79 (120)
18 2aif_A Ribosomal protein L7A; 29.8 43 0.0015 29.9 3.8 44 438-483 47-91 (135)
19 3vi6_A 60S ribosomal protein L 26.5 71 0.0024 28.2 4.6 32 438-469 33-64 (125)
20 3o85_A Ribosomal protein L7AE; 26.3 63 0.0022 28.3 4.2 44 438-483 37-81 (122)
21 2fc3_A 50S ribosomal protein L 25.5 50 0.0017 28.8 3.4 44 438-483 34-78 (124)
22 1xbi_A 50S ribosomal protein L 25.4 51 0.0018 28.7 3.5 44 438-483 35-79 (120)
23 1rlg_A 50S ribosomal protein L 24.8 48 0.0016 28.7 3.1 44 438-483 33-77 (119)
24 3mz0_A Inositol 2-dehydrogenas 20.7 4.4E+02 0.015 25.6 9.5 98 441-556 59-161 (344)
25 3o9z_A Lipopolysaccaride biosy 20.6 4.9E+02 0.017 25.3 9.8 92 429-540 52-145 (312)
26 3uuw_A Putative oxidoreductase 20.1 3.9E+02 0.013 25.5 8.9 79 448-545 66-144 (308)
No 1
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*
Probab=100.00 E-value=1.8e-90 Score=710.95 Aligned_cols=287 Identities=18% Similarity=0.336 Sum_probs=248.9
Q ss_pred ccccCCCCeEEEEEcCC--CCcccchhhhhhhhHHHHHhcCEEecCCCcccc--------ccceeeechhhhhhhCCcce
Q 008526 207 VEWKPKSDKFLFAICLS--GQMSNHLICLEKHMFLAALLNRVLVIPSSKFDY--------QYSRVLDIEHINDCLGRKVV 276 (563)
Q Consensus 207 ~~w~p~~gy~l~cpCmg--GnqanHflcleg~l~FAk~LNRTLVLPPw~i~Y--------~f~~fFDVesL~~y~~~~~V 276 (563)
-+||| |||+||||||| |||||||| |+|+|||+||||||||| ||+| ||++||+|++|++|| +|
T Consensus 3 ~~~d~-~Gyi~yCPCMGRFGNQadhfL---G~LafAk~lnRTLvlPp-wi~y~~~~~~~vpf~~yF~v~~l~~yh---rv 74 (362)
T 3zy2_A 3 EATDP-NGYIVFCPCMGRFGNQVDQFL---GVLAFAKALDRTLVLPN-FIEFKHPETKMIPFEFLFQVGTVAKYT---RV 74 (362)
T ss_dssp -CCCT-TCEEEECCCSSSHHHHHHHHH---HHHHHHHHHTCEEECCC-EEECSSSSCEEECHHHHBCHHHHTTTS---CE
T ss_pred CccCC-CccEEeCCCcCccccHHHHHH---HHHHHHHhhCceEecCc-cccccCCcccccchhheeecchhhhhc---ee
Confidence 47999 79999999999 99999999 99999999999999999 7877 599999999999999 99
Q ss_pred eeHHHHHHH-hcCCCCCC-e-eEEecC--------CCCCCCCChHHHHHHhhhccCCCCcc-CCCCCCCCcCCCcchhhh
Q 008526 277 VSFENFMEM-EKNHAHID-R-FLCYFG--------LPQPCFVDDEHIKKLKQLGISMGKTE-TVWKNEDTRKPSKRTVQD 344 (563)
Q Consensus 277 IemEeFmee-~~~~~piD-r-~yCY~~--------~~~~C~~d~~~~~k~K~lG~~~Gnpf-pFWd~~~v~f~~s~~~~~ 344 (563)
|+|||||++ ++.+||++ | .|||+. ++++|+ ||+ |||| ||||+++|+|.+++++++
T Consensus 75 i~me~Fm~~lap~~WP~~~R~~~C~~~~~~~~~~~~~~~C~--------~K~-----GNPFgpfWd~f~v~F~~se~~~~ 141 (362)
T 3zy2_A 75 VTMQEFTKKIMPTVWPPEKRKAFCWTPRQAIYDKSAEPGCH--------SKE-----GNPFGPYWDQIDVSFVGDEYFGD 141 (362)
T ss_dssp ECHHHHHHHTHHHHSCGGGCEEEESSCBC-------CCBCC--------TTS-----STTHHHHHHHTTCCCCEEEECTT
T ss_pred eeHHHHHHHhccccCCcccceEeeccccccccCCCCCCCCC--------CCC-----CCCCCcchhccccccccceeccC
Confidence 999999999 56555555 5 699984 345899 999 9999 999999999999999985
Q ss_pred hhhccCCcchhhhhccccc-cchhhhcccC-----------CC----Cccccccc---ccccccHHHHHHHHHHHHHhhC
Q 008526 345 IEGKFKTDDDVIAVGDLFY-ADVERDWVMQ-----------PG----GPINHRCK---TLIEPSRLIMVTAQRFVQTFLG 405 (563)
Q Consensus 345 ll~kf~~~~~l~~Igd~F~-~~~~~~W~~~-----------~G----~Pv~~k~r---kyL~wS~~I~~~A~~fI~~aLg 405 (563)
.-. |..|. .++.++|.++ +| ||++.+++ |||+||++|+++|++||+++|+
T Consensus 142 ~~~-----------~l~~~~~~~~~~W~~~~p~~~~pVlAf~gaPa~FPv~~e~r~LqkYm~WS~~i~~~a~~fI~~~L~ 210 (362)
T 3zy2_A 142 IPG-----------GFDLNQMGSRKKWLEKFPSEEYPVLAFSSAPAPFPSKGKVWSIQKYLRWSSRITEQAKKFISANLA 210 (362)
T ss_dssp STT-----------TTCC-------CHHHHSCTTTCSEEEESSCSSCSSCCGGGGGGGGGCCBCHHHHHHHHHHHHHHCC
T ss_pred ccc-----------cccccchhHHHHHHHhCCcccCceEeecCCCCCCCcChhhHhHHHhccccHHHHHHHHHHHHHhcC
Confidence 321 24454 5567888866 45 77899998 9999999999999999999999
Q ss_pred CCcEEeeeec-hhhhhhccCCC----------CC---------------CCCChHHHHHHHHHHHHHcCCCEEEEecCCC
Q 008526 406 SNFIALHFRR-HGFLKFCNAKK----------PS---------------CFYPIPQAADCITRLAERAKAPVIYLSTDAA 459 (563)
Q Consensus 406 gpYIgVHLRR-~DF~~ac~~~v----------Ps---------------C~psi~~aa~qI~~~vk~~~lk~VFIATDA~ 459 (563)
+||||||||| .||+++|++.. || |+||+++|++||+++++++++++||||||++
T Consensus 211 rpyVgIHLR~G~DW~~aC~hlk~~~~~~lfaSPQC~Gy~~~~~~lt~emClPSle~I~rqIk~~vk~~~lksVFIATDa~ 290 (362)
T 3zy2_A 211 KPFVAVHLRNDADWVRVCEHIDTTTNRPLFASEQCLGEGHHLGTLTKEICSPSKQQILEQIVEKVGSIGAKSVFVASDKD 290 (362)
T ss_dssp SSEEEEEECCCHHHHHHHHTCCTTTCCCCTTTHHHHCGGGTTCCCCHHHHSCCHHHHHHHHHHHHHHHTCSEEEEEESSC
T ss_pred CCeEEEEEecCCcHHHHHhhhccccCcccccCCcccCCcccCcccchhccCCCHHHHHHHHHHHHHhcCCcEEEEecCCH
Confidence 9999999999 59999999721 43 7899999999999999999999999999995
Q ss_pred hhhHHHHHHHHhhcCceeEEEeCCCCCCchhhhhHhhhccCCCchhHHHHHhHHHHhcCCccccccccccchHHHHHHHh
Q 008526 460 ESETSLLQSLVVLNGKTIALVKRPPRNSAEKWDSLLYRHHLEDDSQVEAMLDKTICAMSNVFIGASGSTFTEDIMRLRKD 539 (563)
Q Consensus 460 ~~E~~eLk~lL~~~g~~v~vv~r~~~~~~e~~~~ll~kdg~~~Dg~vvAiIDq~Ica~A~~FIGtc~STFS~~IkrERdl 539 (563)
+|++|||++|+ +..++|+++.+ + +||||||||+||+||||||+||||++|+|||++
T Consensus 291 -~~~~ELk~~L~--~~~v~vv~~~p--------------------e-~a~ID~~I~~~A~~FIGN~~SSFSa~I~rERdi 346 (362)
T 3zy2_A 291 -HMIDEINEALK--PYEIEAHRQEP--------------------D-DMYTSLAIMGRADLFVGNCVSTFSHIVKRERDH 346 (362)
T ss_dssp -CCHHHHHHHHG--GGTCCEECCSS--------------------C-CHHHHHHHHHHSSEEEECTTCHHHHHHHHHHHH
T ss_pred -HHHHHHHHHhh--ccCceEEEeCC--------------------c-hhHHHHHHHHhCCEeecCccccccHHHHHHHHh
Confidence 59999999997 33455666654 4 699999999999999999999999999999999
Q ss_pred cC---CCCCcccc
Q 008526 540 WG---STSLCDEY 549 (563)
Q Consensus 540 ~G---~pSsf~e~ 549 (563)
+| +||+|++.
T Consensus 347 ~G~~~~ps~Ffg~ 359 (362)
T 3zy2_A 347 AGQSPRPSAFFGI 359 (362)
T ss_dssp SSSSCCCEEETTC
T ss_pred cCCCCCCccccCC
Confidence 99 99999873
No 2
>4ap5_A GDP-fucose protein O-fucosyltransferase 2; GT-B, GT68; HET: NAG; 3.00A {Homo sapiens} PDB: 4ap6_A*
Probab=100.00 E-value=2.2e-59 Score=482.90 Aligned_cols=304 Identities=22% Similarity=0.337 Sum_probs=227.2
Q ss_pred CCeEEEEEcCC---CCcccchhhhhhhhHHHHHhcCE----EecCCCcccc------------ccceeeechhhhhhhCC
Q 008526 213 SDKFLFAICLS---GQMSNHLICLEKHMFLAALLNRV----LVIPSSKFDY------------QYSRVLDIEHINDCLGR 273 (563)
Q Consensus 213 ~gy~l~cpCmg---GnqanHflcleg~l~FAk~LNRT----LVLPPw~i~Y------------~f~~fFDVesL~~y~~~ 273 (563)
..|+||||||| |||.|||+ +.+.|||.|||| ||||||...| ||++||||++|++||
T Consensus 22 ~rYl~y~~~~g~Gfn~qrd~f~---~~a~~a~~Lnrt~~~~LVLPPw~~~~h~~~~~~~~~~ipf~~fFDv~~L~~~v-- 96 (408)
T 4ap5_A 22 RRYLLYDVNPPEGFNLRRDVYI---RIASLLKTLLKTEEWVLVLPPWGRLYHWQSPDIHQVRIPWSEFFDLPSLNKNI-- 96 (408)
T ss_dssp CEEEEECCCTTCCHHHHHHHHH---HHHHHHHHHHTTSCEEEEECCBCCSCGGGSTTSCCCSBCGGGTBCHHHHHTTS--
T ss_pred cceEEecCCCCCcccHHHHHHH---HHHHHHHHHhCcCCcEEEeCCCcccccccCCcccceeccHHHhcCHHHHHhhC--
Confidence 48999999999 68999999 999999999999 9999985544 599999999999999
Q ss_pred cceeeHHHHHHHhcCCCCCCeeEEecC--------------CCCCCCCChHHHHHHhhhccCCCCcc-CCCCCCCCcCCC
Q 008526 274 KVVVSFENFMEMEKNHAHIDRFLCYFG--------------LPQPCFVDDEHIKKLKQLGISMGKTE-TVWKNEDTRKPS 338 (563)
Q Consensus 274 ~~VIemEeFmee~~~~~piDr~yCY~~--------------~~~~C~~d~~~~~k~K~lG~~~Gnpf-pFWd~~~v~f~~ 338 (563)
|||||||||++ -+...++.+++... +.+.|. ++..+.++|. |+++ |||+++++++..
T Consensus 97 -pVI~meeFl~~-~~~~~~~~v~~l~~~~~~~~~~~~~~k~~~~~c~-~~~~~~~~~~-----~~~~gpfw~~~~v~~~~ 168 (408)
T 4ap5_A 97 -PVIEYEQFIAE-SGGPFIDQVYVLQSYAEGWKEGTWEEKVDERPCI-DQLLYSQDKH-----EYYRGWFWGYEETRGLN 168 (408)
T ss_dssp -CEEEHHHHHHH-SSSSEEEEEEEEECCTTCCCTTCCCCCEEEECCS-SCCSCEECTT-----SCEECCGGGCTTCEEEE
T ss_pred -CeeEHHHHHHH-hCCCCCcceeeccccHhhcccccccchhhhhhhh-hccccccccc-----cCccCCcccccccccCC
Confidence 99999999999 33334555554222 223566 5566666777 8888 999999987663
Q ss_pred c---------chhhhhhh-ccCCcchhhhhccccccchhhhcccCCCCcccccccccccccHHHHHHHHHHHHHhh----
Q 008526 339 K---------RTVQDIEG-KFKTDDDVIAVGDLFYADVERDWVMQPGGPINHRCKTLIEPSRLIMVTAQRFVQTFL---- 404 (563)
Q Consensus 339 s---------~~~~~ll~-kf~~~~~l~~Igd~F~~~~~~~W~~~~G~Pv~~k~rkyL~wS~~I~~~A~~fI~~aL---- 404 (563)
. ..+.+.+. .++.+ ...-...+..+...+|.....+.++||+|++.|...|.+||++.|
T Consensus 169 ~~c~~~~~~~~~~~~~~~~~~~~~-------s~~v~~~e~~l~~~~~~~~~~~~~r~l~~s~~l~~~a~~fi~~~L~~~~ 241 (408)
T 4ap5_A 169 VSCLSVQGSASIVAPLLLRNTSAR-------SVMLDRAENLLHDHYGGKEYWDTRRSMVFARHLREVGDEFRSRHLNSTD 241 (408)
T ss_dssp EEEEEECSBGGGGHHHHHHCTTCS-------EEEEESGGGSBCSSTTSHHHHHHHHTCCBCHHHHHHHHHHHHHHHCCCT
T ss_pred ceeEEEeecchhhhhhhhhcCChh-------hhhhhhcccCCccccchHhhhhHHHHhhhhHHHHHHHHHHHHHHhCccc
Confidence 2 22222221 11100 000000111122223333344566999999999999999999765
Q ss_pred ----------------------CCCcEEeeeechhhhhhccCCCCCCCCChHHHHHHHHHHHHHcCCCEEEEecCCChhh
Q 008526 405 ----------------------GSNFIALHFRRHGFLKFCNAKKPSCFYPIPQAADCITRLAERAKAPVIYLSTDAAESE 462 (563)
Q Consensus 405 ----------------------ggpYIgVHLRR~DF~~ac~~~vPsC~psi~~aa~qI~~~vk~~~lk~VFIATDA~~~E 462 (563)
||||+|+|+||.||++.|++ |.|++++||++|+++|+++++++||||||+.+++
T Consensus 242 ~~~h~r~~~dw~~~~~~~~~~~~~~y~~~H~Rr~d~~~~~~~----~~ps~~~~~~~i~~~~~~~~~~~VyiATD~~~~~ 317 (408)
T 4ap5_A 242 DADRIPFQEDWMKMKVKLGSALGGPYLGVHLRRKDFIWGHRQ----DVPSLEGAVRKIRSLMKTHRLDKVFVATDAVRKE 317 (408)
T ss_dssp TTTTCCCCSSGGGCCCCTTCBCCEEEEEEEECCTTTTTTTCS----SSCCHHHHHHHHHHHHHHHTCSCEEEEECCCHHH
T ss_pred ceeecccchhHhhhhcccccccCCCccccccccccchhhhhc----cCCCHHHHHHHHHHHHHhcCCCEEEEeCCCchhH
Confidence 45777777777777777654 6677999999999999999999999999998899
Q ss_pred HHHHHHHHhhcCceeEEEeCCCCCCchhhhhH-hhhccCCCchhHHHHHhHHHHhcCCccccccccccchHHHHHHHhcC
Q 008526 463 TSLLQSLVVLNGKTIALVKRPPRNSAEKWDSL-LYRHHLEDDSQVEAMLDKTICAMSNVFIGASGSTFTEDIMRLRKDWG 541 (563)
Q Consensus 463 ~~eLk~lL~~~g~~v~vv~r~~~~~~e~~~~l-l~kdg~~~Dg~vvAiIDq~Ica~A~~FIGtc~STFS~~IkrERdl~G 541 (563)
+++|+++++ .++ ...+ ..+.+ .++ ||+ +|||||+||++|++|||||+||||++|+|||+++|
T Consensus 318 ~~~l~~~~~---~~~---~~~~-----~~~~~~~~~-----d~~-~a~idq~Ic~~a~~FiGt~~StfS~~I~~eR~~~G 380 (408)
T 4ap5_A 318 YEELKKLLP---EMV---RFEP-----TWEELELYK-----DGG-VAIIDQWICAHARFFIGTSVSTFSFRIHEEREILG 380 (408)
T ss_dssp HHHHHHHCT---TEE---CCCC-----CHHHHHHHH-----HHH-HHHHHHHHHHTEEEEEBCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHhCC---CcE---EecC-----cchhhhccC-----cch-hhHHHHHHHHhCCeeEeCCcCchhHHHHHHHHhcC
Confidence 999999996 322 1221 12222 343 447 79999999999999999999999999999999999
Q ss_pred CCC-CccccccCCCCcc
Q 008526 542 STS-LCDEYLCQGEEPN 557 (563)
Q Consensus 542 ~pS-sf~e~~c~~~~~~ 557 (563)
+|+ +.-..||.....|
T Consensus 381 ~~~~~t~~~~c~~~~~~ 397 (408)
T 4ap5_A 381 LDPKTTYNRFCGDQEKA 397 (408)
T ss_dssp BCGGGTSCBCCCTTCSS
T ss_pred CCCCccccccCCCCccC
Confidence 994 5567899877654
No 3
>2hhc_A NODZ, nodulation fucosyltransferase NODZ; glycosyltransferase; 1.54A {Bradyrhizobium SP} PDB: 2hlh_A 2ocx_A* 3siw_A* 3six_A*
Probab=99.16 E-value=6.4e-11 Score=118.19 Aligned_cols=141 Identities=16% Similarity=0.137 Sum_probs=89.2
Q ss_pred ccccccHHHHHHHHHHHHHhhC-CCcEEeeeechhhhhhccCCC--C-CCCCChHHHHHHHHHHHHHc--CCCEEEEecC
Q 008526 384 TLIEPSRLIMVTAQRFVQTFLG-SNFIALHFRRHGFLKFCNAKK--P-SCFYPIPQAADCITRLAERA--KAPVIYLSTD 457 (563)
Q Consensus 384 kyL~wS~~I~~~A~~fI~~aLg-gpYIgVHLRR~DF~~ac~~~v--P-sC~psi~~aa~qI~~~vk~~--~lk~VFIATD 457 (563)
+||+|+..+....+++++..+. .++||||.||.|....|.+.. . .|.| +++..++|++...+. +.++||||||
T Consensus 146 ~yl~p~~~i~~~i~~~~~~~~~~~~~VGVHIRrgD~~~~~~~~~~~~~~~~~-l~~~~~~i~~~~~~~~~~~~~vfvaSD 224 (330)
T 2hhc_A 146 RNIKLRSEIRARIDALYEEHFSGHSIIGVHVRHGNGEDIMEHAPYWADSELA-LHQVCMAIRKAKALSYPKPVKVFLCTD 224 (330)
T ss_dssp HHSCBCHHHHHHHHHHHHHHTTTSEEEEEEECC------------CHHHHHH-HHHHHHHHHHHHTSCCSSCEEEEEEES
T ss_pred hcCCccHHHHHHHHHHHHHhccCCceEEEEEecCCCCcccccCcchHHHhHH-HHHHHHHHHHHHhccCcCceEEEEEeC
Confidence 8999999999999999987644 599999999999877776521 0 1222 777778887777766 4589999999
Q ss_pred CChhhHHHHHHHHhhcCceeEEEeCCCCCCchhhh--hHhhhccCCCchhHHHHHhHHHHhcCCccc--cccccccchHH
Q 008526 458 AAESETSLLQSLVVLNGKTIALVKRPPRNSAEKWD--SLLYRHHLEDDSQVEAMLDKTICAMSNVFI--GASGSTFTEDI 533 (563)
Q Consensus 458 A~~~E~~eLk~lL~~~g~~v~vv~r~~~~~~e~~~--~ll~kdg~~~Dg~vvAiIDq~Ica~A~~FI--Gtc~STFS~~I 533 (563)
. ...+++|++.++ . +.++... ...+. .+-++.. ..+++..|++|.+++|+++|+| |+ .||||...
T Consensus 225 d-~~~~~~lk~~~~---~-~~~~~~~----~~~~~~~~~h~~~~-~~~~~~~~~~Dm~LLS~cd~~I~~~~-~STFs~~a 293 (330)
T 2hhc_A 225 S-AQVLDQVSGLFP---D-VFAVPKR----FQADRAGPLHSAEM-GIEGGASALIDMYLLARCATVIRFPP-TSAFTRYA 293 (330)
T ss_dssp C-HHHHHHHHHHST---T-EECCCC---------------CHHH-HHHHHHHHHHHHHHHTTCSEEEEEST-TCGGGHHH
T ss_pred C-HHHHHHHHHHcC---C-cccccce----eecccccccccCch-hhccchHHHHHHHHHHcCCeeEECCC-CCCHHHHH
Confidence 9 568888988874 2 2121100 00000 0000000 0012336999999999999999 66 99999999
Q ss_pred HHH
Q 008526 534 MRL 536 (563)
Q Consensus 534 krE 536 (563)
++.
T Consensus 294 a~l 296 (330)
T 2hhc_A 294 RLL 296 (330)
T ss_dssp HHH
T ss_pred HHh
Confidence 854
No 4
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Probab=99.09 E-value=4.1e-09 Score=113.86 Aligned_cols=144 Identities=16% Similarity=0.226 Sum_probs=94.9
Q ss_pred cccccccHHHHHHHHHHHHHh-hCCCcEEeeeechhhhhhccCCCCCCCCChHHHHHHHHHHHH------HcCCCEEEEe
Q 008526 383 KTLIEPSRLIMVTAQRFVQTF-LGSNFIALHFRRHGFLKFCNAKKPSCFYPIPQAADCITRLAE------RAKAPVIYLS 455 (563)
Q Consensus 383 rkyL~wS~~I~~~A~~fI~~a-LggpYIgVHLRR~DF~~ac~~~vPsC~psi~~aa~qI~~~vk------~~~lk~VFIA 455 (563)
+.+++|+..|.+..+++.... .++|.||||.||.|.+.. +. . +.|++.-.+.+..++. ......||||
T Consensus 271 ~yl~rP~~~i~~~I~~~~~~l~~~~piVGVHIRrGDk~~~-E~---~-~~~~~~Y~~~v~~~~~~l~~~~~~~~~~ifLA 345 (526)
T 2de0_X 271 KYLIRPQPWLEKEIEEATKKLGFKHPVIGVHVRRTDKVGT-EA---A-FHPIEEYMVHVEEHFQLLARRMQVDKKRVYLA 345 (526)
T ss_dssp HHHTCBCHHHHHHHHHHHHHHTCCSSEEEEEECCC------CC---C-SCSHHHHHHHHHHHHHHHHTTSCCSSCEEEEE
T ss_pred HHHcCCCHHHHHHHHHHHHHhCCCCCEEEEEEeCCCCCcc-cc---c-cCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEE
Confidence 467899999999988888774 588999999999999643 22 1 2336666666666554 2457899999
Q ss_pred cCCChhhHHHHHHHHhhcCceeEEEeCCCCCCchhhhhHhhhccCCCchhHHHHHhHHHHhcCCccccccccccchHHHH
Q 008526 456 TDAAESETSLLQSLVVLNGKTIALVKRPPRNSAEKWDSLLYRHHLEDDSQVEAMLDKTICAMSNVFIGASGSTFTEDIMR 535 (563)
Q Consensus 456 TDA~~~E~~eLk~lL~~~g~~v~vv~r~~~~~~e~~~~ll~kdg~~~Dg~vvAiIDq~Ica~A~~FIGtc~STFS~~Ikr 535 (563)
||- ..-++++++..+ .. .++..... .|.+-+ ......++-..+++|+++++.+++||||..||||.-+.+
T Consensus 346 TDD-p~v~~e~k~~~p--~~--~~~~d~~~----~~~a~~-~~R~s~~~l~~~l~DL~lLs~cd~~Vgt~sS~~srla~~ 415 (526)
T 2de0_X 346 TDD-PSLLKEAKTKYP--NY--EFISDNSI----SWSAGL-HNRYTENSLRGVILDIHFLSQADFLVCTFSSQVCRVAYE 415 (526)
T ss_dssp ESC-HHHHHHHHHHCT--TS--EEECCCCS----SCSSGG-GGGTCCTHHHHHHHHHHHHHHSSEEEECTTSHHHHHHHH
T ss_pred cCC-HHHHHHHHHhCC--CC--EEecCccc----ccccCc-cccccHHHHHHHHHHHHHHhcCCeeecCCCCHHHHHHHH
Confidence 998 667888877554 22 22221110 011100 000011222368999999999999999999999999998
Q ss_pred HHHhcC
Q 008526 536 LRKDWG 541 (563)
Q Consensus 536 ERdl~G 541 (563)
.|.-.+
T Consensus 416 l~~~~~ 421 (526)
T 2de0_X 416 IMQTLH 421 (526)
T ss_dssp HHTTSS
T ss_pred HhcCcC
Confidence 876554
No 5
>3v7q_A Probable ribosomal protein YLXQ; L7AE superfamily, K-turn binding, K-turn RNA, hypothetical R protein, RNA binding protein; HET: CIT; 1.55A {Bacillus subtilis}
Probab=56.32 E-value=14 Score=31.22 Aligned_cols=44 Identities=16% Similarity=0.221 Sum_probs=33.3
Q ss_pred HHHHHHHHHcCCCEEEEecCCChhhHHHHHHHHhhcCceeEEEeCC
Q 008526 438 DCITRLAERAKAPVIYLSTDAAESETSLLQSLVVLNGKTIALVKRP 483 (563)
Q Consensus 438 ~qI~~~vk~~~lk~VFIATDA~~~E~~eLk~lL~~~g~~v~vv~r~ 483 (563)
+++.+.+++-+++-|+||+|+++.....|..+-.. ..+|++..+
T Consensus 25 ~~v~kai~~gka~lViiA~D~~~~~~~~i~~~c~~--~~vp~~~~~ 68 (101)
T 3v7q_A 25 DLVIKEIRNARAKLVLLTEDASSNTAKKVTDKCNY--YKVPYKKVE 68 (101)
T ss_dssp HHHHHHHHTTCCSEEEEETTSCHHHHHHHHHHHHH--TTCCEEEES
T ss_pred hhhHHHHhcCceeEEEEeccccccchhhhcccccc--cCCCeeeec
Confidence 56677778889999999999988888888766542 446666654
No 6
>3on1_A BH2414 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; HET: MSE; 1.65A {Bacillus halodurans}
Probab=53.78 E-value=15 Score=30.89 Aligned_cols=44 Identities=14% Similarity=0.125 Sum_probs=32.3
Q ss_pred HHHHHHHHHcCCCEEEEecCCChhhHHHHHHHHhhcCceeEEEeCC
Q 008526 438 DCITRLAERAKAPVIYLSTDAAESETSLLQSLVVLNGKTIALVKRP 483 (563)
Q Consensus 438 ~qI~~~vk~~~lk~VFIATDA~~~E~~eLk~lL~~~g~~v~vv~r~ 483 (563)
+++.+.+++-+++-|+||+|+++.....|..+-.. ..+|++..+
T Consensus 24 ~~v~kai~~gka~lViiA~D~~~~~~~~i~~~c~~--~~ip~~~~~ 67 (101)
T 3on1_A 24 EQVVKAVQNGQVTLVILSSDAGIHTKKKLLDKCGS--YQIPVKVVG 67 (101)
T ss_dssp HHHHHHHHTTCCSEEEEETTSCHHHHHHHHHHHHH--HTCCEEEES
T ss_pred HHHHHHHHcCCCcEEEEeCCCCHHHHHHHHHHHHH--cCCCEEEeC
Confidence 56666777788999999999988777777666542 346676543
No 7
>3j21_Z 50S ribosomal protein L30E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=48.58 E-value=34 Score=28.65 Aligned_cols=43 Identities=19% Similarity=0.190 Sum_probs=30.9
Q ss_pred HHHHHHHHHcCCCEEEEecCCChhhHHHHHHHHhhcCceeEEEeC
Q 008526 438 DCITRLAERAKAPVIYLSTDAAESETSLLQSLVVLNGKTIALVKR 482 (563)
Q Consensus 438 ~qI~~~vk~~~lk~VFIATDA~~~E~~eLk~lL~~~g~~v~vv~r 482 (563)
+++.+.+++-+++-|+||+|+++.-+..|..+=.. ..+|++..
T Consensus 21 ~~v~kai~~gka~lViiA~D~~~~~~~~i~~~c~~--~~ip~~~~ 63 (99)
T 3j21_Z 21 NETIRLAKTGGAKLIIVAKNAPKEIKDDIYYYAKL--SDIPVYEF 63 (99)
T ss_dssp HHHHHHHHHTCCSEEEEECCCCHHHHHHHHHHHHH--TTCCEEEE
T ss_pred HHHHHHHHcCCccEEEEeCCCCHHHHHHHHHHHHH--cCCCEEEe
Confidence 56666777788999999999987777777666542 34665443
No 8
>4a18_G RPL30; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_G 4a1b_G 4a1d_G 4adx_6
Probab=45.61 E-value=27 Score=29.61 Aligned_cols=42 Identities=12% Similarity=0.258 Sum_probs=30.7
Q ss_pred HHHHHHHHHcCCCEEEEecCCChhhHHHHHHHHhhcCceeEEEe
Q 008526 438 DCITRLAERAKAPVIYLSTDAAESETSLLQSLVVLNGKTIALVK 481 (563)
Q Consensus 438 ~qI~~~vk~~~lk~VFIATDA~~~E~~eLk~lL~~~g~~v~vv~ 481 (563)
+++.+.+++-+++-|+||+|+++....++..+=.. ..+|++.
T Consensus 28 ~~v~kai~~gkaklViiA~D~~~~~~~~i~~~c~~--~~ip~~~ 69 (104)
T 4a18_G 28 KSTIKAIRNGTAKLVFISNNCPTVRKSEIEYYASL--AQISIHH 69 (104)
T ss_dssp HHHHHHHHHTCCCEEEECTTSCHHHHHHHHHHHHH--HTCEEEE
T ss_pred HHHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHH--cCCcEEE
Confidence 55666667778999999999988777777665432 3477764
No 9
>3u5e_c L32, RP73, YL38, 60S ribosomal protein L30; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_f 3izs_f 3o58_Z 3o5h_Z 1t0k_B 3u5i_c 4b6a_c 1ck2_A 1cn7_A 1nmu_B* 3jyw_2
Probab=43.32 E-value=28 Score=29.64 Aligned_cols=42 Identities=12% Similarity=0.172 Sum_probs=31.1
Q ss_pred HHHHHHHHHcCCCEEEEecCCChhhHHHHHHHHhhcCceeEEEe
Q 008526 438 DCITRLAERAKAPVIYLSTDAAESETSLLQSLVVLNGKTIALVK 481 (563)
Q Consensus 438 ~qI~~~vk~~~lk~VFIATDA~~~E~~eLk~lL~~~g~~v~vv~ 481 (563)
+++.+.+++-+++-|+||+|+++..+.++..+=.. ..+|++.
T Consensus 28 ~~v~kai~~gkaklVilA~D~~~~~~~~i~~~c~~--~~ip~~~ 69 (105)
T 3u5e_c 28 KSTVKSLRQGKSKLIIIAANTPVLRKSELEYYAML--SKTKVYY 69 (105)
T ss_dssp HHHHHHHHTTCCSEEEECTTSCHHHHHHHHHHHHH--HTCEEEE
T ss_pred HHHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHH--cCCCEEE
Confidence 55666677788999999999987777777666442 3577773
No 10
>3iz5_f 60S ribosomal protein L30 (L30E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_f
Probab=41.94 E-value=38 Score=29.48 Aligned_cols=43 Identities=12% Similarity=0.202 Sum_probs=31.6
Q ss_pred HHHHHHHHHcCCCEEEEecCCChhhHHHHHHHHhhcCceeEEEeC
Q 008526 438 DCITRLAERAKAPVIYLSTDAAESETSLLQSLVVLNGKTIALVKR 482 (563)
Q Consensus 438 ~qI~~~vk~~~lk~VFIATDA~~~E~~eLk~lL~~~g~~v~vv~r 482 (563)
++..+.+++-+++-|+||.|+++....++..+=.. ..+|++..
T Consensus 32 ~~t~kai~~gkakLVilA~D~~~~~~~~i~~~c~~--~~ipv~~~ 74 (112)
T 3iz5_f 32 KTVLKTLRSSLGKLIILANNCPPLRKSEIETYAML--AKISVHHF 74 (112)
T ss_dssp HHHHHHHHTTCCSEEEECSCCCHHHHHHHHHHHHH--TTCCEECC
T ss_pred HHHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHH--cCCcEEEe
Confidence 55666677788999999999987666666665542 45777766
No 11
>2hhc_A NODZ, nodulation fucosyltransferase NODZ; glycosyltransferase; 1.54A {Bradyrhizobium SP} PDB: 2hlh_A 2ocx_A* 3siw_A* 3six_A*
Probab=40.88 E-value=12 Score=36.87 Aligned_cols=34 Identities=21% Similarity=0.015 Sum_probs=27.0
Q ss_pred eEEEEEcCC-CCcccchhhhhhhhHHHHHhcCEEecCC
Q 008526 215 KFLFAICLS-GQMSNHLICLEKHMFLAALLNRVLVIPS 251 (563)
Q Consensus 215 y~l~cpCmg-GnqanHflcleg~l~FAk~LNRTLVLPP 251 (563)
|++.-++-| |||.-|+. -.+++|.+.||+|++..
T Consensus 6 ~iv~~~~gGLGNqm~~~a---~a~~~A~~t~r~l~vd~ 40 (330)
T 2hhc_A 6 FVISRRRTGFGDCLWSLA---SAWSYAQRTGRTLVIDW 40 (330)
T ss_dssp EEEEECCSCHHHHHHHHH---HHHHHHHHHTCEEEEEC
T ss_pred EEEEeCCCcHHHHHHHHH---HHHHHHHHhCCEEEEEC
Confidence 444445556 99999988 99999999999988753
No 12
>1w41_A 50S ribosomal protein L30E; electrostatic interactions, thermostability, protein engineering; 1.7A {Thermococcus celer} SCOP: d.79.3.1 PDB: 3n4y_A 3lfo_A 1w40_A 1go0_A 1go1_A 1h7m_A 1w42_A 1w3e_X 3ra6_A 3ra5_A 3n4z_A 2bo1_A
Probab=38.73 E-value=42 Score=28.09 Aligned_cols=42 Identities=14% Similarity=0.116 Sum_probs=29.9
Q ss_pred HHHHHHHHHcCCCEEEEecCCChhhHHHHHHHHhhcCceeEEEe
Q 008526 438 DCITRLAERAKAPVIYLSTDAAESETSLLQSLVVLNGKTIALVK 481 (563)
Q Consensus 438 ~qI~~~vk~~~lk~VFIATDA~~~E~~eLk~lL~~~g~~v~vv~ 481 (563)
+++.+.+++-+++-|+||+|++..-+..|..+=.. +.+|++.
T Consensus 22 ~~v~kai~~gka~lViiA~D~~~~~~~~l~~~c~~--~~vp~~~ 63 (101)
T 1w41_A 22 RKSIQYAKMGGAKLIIVARNARPDIKEDIEYYARL--SGIPVYE 63 (101)
T ss_dssp HHHHHHHHHTCCSEEEEETTSCHHHHHHHHHHHHH--HTCCEEE
T ss_pred HHHHHHHHcCCCcEEEEeCCCCHHHHHHHHHHHHh--cCCCEEE
Confidence 55666777778999999999977666666666542 3466554
No 13
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=37.02 E-value=25 Score=28.70 Aligned_cols=44 Identities=18% Similarity=0.141 Sum_probs=30.5
Q ss_pred HHHHHHHHHcCCCEEEEecCCChhhHHHHHHHHhhcCceeEEEeCC
Q 008526 438 DCITRLAERAKAPVIYLSTDAAESETSLLQSLVVLNGKTIALVKRP 483 (563)
Q Consensus 438 ~qI~~~vk~~~lk~VFIATDA~~~E~~eLk~lL~~~g~~v~vv~r~ 483 (563)
+++.+.+++-+++-|+||.|+++.-+..|..+=. ...+|++..+
T Consensus 17 ~~v~kai~~gkaklViiA~D~~~~~~~~i~~lc~--~~~Ip~~~v~ 60 (82)
T 3v7e_A 17 KQTVKALKRGSVKEVVVAKDADPILTSSVVSLAE--DQGISVSMVE 60 (82)
T ss_dssp HHHHHHHTTTCEEEEEEETTSCHHHHHHHHHHHH--HHTCCEEEES
T ss_pred HHHHHHHHcCCeeEEEEeCCCCHHHHHHHHHHHH--HcCCCEEEEC
Confidence 5666777777899999999997755555555443 2456776655
No 14
>2lbw_A H/ACA ribonucleoprotein complex subunit 2; L7AE, snoRNP, scaRNP, RNA binding protein; NMR {Saccharomyces cerevisiae} PDB: 2lbx_A
Probab=37.02 E-value=47 Score=28.97 Aligned_cols=44 Identities=9% Similarity=0.182 Sum_probs=32.4
Q ss_pred HHHHHHHHHcCCCEEEEecCCChhh-HHHHHHHHhhcCceeEEEeCC
Q 008526 438 DCITRLAERAKAPVIYLSTDAAESE-TSLLQSLVVLNGKTIALVKRP 483 (563)
Q Consensus 438 ~qI~~~vk~~~lk~VFIATDA~~~E-~~eLk~lL~~~g~~v~vv~r~ 483 (563)
+++.+.+++-+++-|+||.|+++.+ +..|..+-.. ..||++..+
T Consensus 26 ~~v~kai~~gkakLViiA~D~~~~~~~~~l~~lc~~--~~VP~~~v~ 70 (121)
T 2lbw_A 26 KEVVKALRKGEKGLVVIAGDIWPADVISHIPVLCED--HSVPYIFIP 70 (121)
T ss_dssp HHHHHHHHHSCCCEEEECTTCSCTTHHHHHHHHHHH--TCCCEEECC
T ss_pred HHHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHh--cCCcEEEEC
Confidence 5556666777899999999998755 7777777653 457776655
No 15
>3cpq_A 50S ribosomal protein L30E; RNA-protein, elongation factor, ribonucleoprotein, structural genomics, NPPSFA; 1.90A {Methanocaldococcus jannaschii}
Probab=35.65 E-value=40 Score=28.87 Aligned_cols=43 Identities=5% Similarity=0.102 Sum_probs=30.4
Q ss_pred HHHHHHHHHcCCCEEEEecCCChhhHHHHHHHHhhcCceeEEEeC
Q 008526 438 DCITRLAERAKAPVIYLSTDAAESETSLLQSLVVLNGKTIALVKR 482 (563)
Q Consensus 438 ~qI~~~vk~~~lk~VFIATDA~~~E~~eLk~lL~~~g~~v~vv~r 482 (563)
+++.+.+++-+++-|+||+|++..-+..|..+=. ...+|++..
T Consensus 27 ~~v~kai~~gka~lViiA~D~~~~~~~~l~~~c~--~~~Vp~~~~ 69 (110)
T 3cpq_A 27 KRTIKFVKHGEGKLVVLAGNIPKDLEEDVKYYAK--LSNIPVYQH 69 (110)
T ss_dssp HHHHHHHHTTCCSEEEECTTCBHHHHHHHHHHHH--HTTCCEEEC
T ss_pred HHHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHH--HcCCCEEEE
Confidence 5566666777899999999997666666766654 235665554
No 16
>3tov_A Glycosyl transferase family 9; structural genomics, PSI-BIOL protein structure initiative, midwest center for structural genomics, MCSG; 2.98A {Veillonella parvula}
Probab=35.32 E-value=1.3e+02 Score=29.81 Aligned_cols=72 Identities=10% Similarity=0.026 Sum_probs=39.6
Q ss_pred ccHHHHHHHHHHHHHh-h--CCCcEEeeeechhhhhhccCCCCCCCCChHHHHHHHHHHHHHcCCCEEEEecCCChhhHH
Q 008526 388 PSRLIMVTAQRFVQTF-L--GSNFIALHFRRHGFLKFCNAKKPSCFYPIPQAADCITRLAERAKAPVIYLSTDAAESETS 464 (563)
Q Consensus 388 wS~~I~~~A~~fI~~a-L--ggpYIgVHLRR~DF~~ac~~~vPsC~psi~~aa~qI~~~vk~~~lk~VFIATDA~~~E~~ 464 (563)
.+..-...|++++... + ++|||++|..-+. . .. ..|.+..++-++.+.++ +.+.|++.+.++....+
T Consensus 164 ~~~~~~~~~~~~l~~~g~~~~~~~i~i~pga~~-~-~k-------~wp~~~~~~l~~~l~~~-g~~vvl~g~~~e~~~~~ 233 (349)
T 3tov_A 164 ICEEWRCQAQEFYSSHGLTDTDILIGFNIGSAV-P-EK-------RWPAERFAHVADYFGRL-GYKTVFFGGPMDLEMVQ 233 (349)
T ss_dssp CCHHHHHHHHHHHHHTTCCTTCCEEEEECCCSS-G-GG-------CCCHHHHHHHHHHHHHH-TCEEEECCCTTTHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCCCCCEEEEeCCCCC-c-cC-------CCCHHHHHHHHHHHHhC-CCeEEEEeCcchHHHHH
Confidence 3445556677777654 2 5699999986521 1 11 12244454444444444 88888877665333333
Q ss_pred HHHHH
Q 008526 465 LLQSL 469 (563)
Q Consensus 465 eLk~l 469 (563)
++.+.
T Consensus 234 ~i~~~ 238 (349)
T 3tov_A 234 PVVEQ 238 (349)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 33333
No 17
>1vq8_F 50S ribosomal protein L7AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.79.3.1 PDB: 1vq4_F* 1vq5_F* 1vq6_F* 1vq7_F* 1s72_F* 1vq9_F* 1vqk_F* 1vql_F* 1vqm_F* 1vqn_F* 1vqo_F* 1vqp_F* 1yhq_F* 1yi2_F* 1yij_F* 1yit_F* 1yj9_F* 1yjn_F* 1yjw_F* 2otj_F* ...
Probab=31.62 E-value=51 Score=28.57 Aligned_cols=44 Identities=18% Similarity=0.283 Sum_probs=30.6
Q ss_pred HHHHHHHHHcCCCEEEEecCCChhh-HHHHHHHHhhcCceeEEEeCC
Q 008526 438 DCITRLAERAKAPVIYLSTDAAESE-TSLLQSLVVLNGKTIALVKRP 483 (563)
Q Consensus 438 ~qI~~~vk~~~lk~VFIATDA~~~E-~~eLk~lL~~~g~~v~vv~r~ 483 (563)
+++.+.+++-+++-|+||+|+++.+ +..|..+=. ...+|++..+
T Consensus 35 ~~v~kal~~gka~lViiA~D~~~~~~~~~l~~lc~--~~~Vp~~~~~ 79 (120)
T 1vq8_F 35 NETTKSIERGSAELVFVAEDVQPEEIVMHIPELAD--EKGVPFIFVE 79 (120)
T ss_dssp HHHHHHHHHTCCSEEEEESCCSSGGGTTTHHHHHH--TTCCCEEEES
T ss_pred HHHHHHHHcCCceEEEEeCCCChHHHHHHHHHHHH--hcCCCEEEEC
Confidence 5556666777899999999997755 566666654 3456665544
No 18
>2aif_A Ribosomal protein L7A; high-mobility like protein, transcription factor, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum} SCOP: d.79.3.1
Probab=29.78 E-value=43 Score=29.88 Aligned_cols=44 Identities=23% Similarity=0.159 Sum_probs=30.8
Q ss_pred HHHHHHHHHcCCCEEEEecCCChhhH-HHHHHHHhhcCceeEEEeCC
Q 008526 438 DCITRLAERAKAPVIYLSTDAAESET-SLLQSLVVLNGKTIALVKRP 483 (563)
Q Consensus 438 ~qI~~~vk~~~lk~VFIATDA~~~E~-~eLk~lL~~~g~~v~vv~r~ 483 (563)
+++.+.+++-+++-|+||+|+++.++ ..|..+=.. ..+|++..+
T Consensus 47 ~~v~kal~~gkaklViiA~D~~~~~~~~~l~~lc~~--~~IP~~~v~ 91 (135)
T 2aif_A 47 NEATKALNRGIAEIVLLAADAEPLEILLHLPLVCED--KNTPYVFVR 91 (135)
T ss_dssp HHHHHHHHTTCEEEEEEETTCSCHHHHHHHHHHHHH--TTCCEEEES
T ss_pred HHHHHHHHcCCCeEEEEecCCChHHHHhHHHHHHHh--cCCcEEEEC
Confidence 55566667778999999999987665 777776542 346666544
No 19
>3vi6_A 60S ribosomal protein L30; three-layer alpha/beta/ALPA; 1.59A {Homo sapiens} PDB: 2zkr_6 1ysh_C
Probab=26.55 E-value=71 Score=28.23 Aligned_cols=32 Identities=13% Similarity=0.226 Sum_probs=25.2
Q ss_pred HHHHHHHHHcCCCEEEEecCCChhhHHHHHHH
Q 008526 438 DCITRLAERAKAPVIYLSTDAAESETSLLQSL 469 (563)
Q Consensus 438 ~qI~~~vk~~~lk~VFIATDA~~~E~~eLk~l 469 (563)
+++.+.+++-+++-|+||.|+++.-...|..+
T Consensus 33 ~~v~kaIr~gkakLVIiA~Das~~~~~ki~~~ 64 (125)
T 3vi6_A 33 KQTLKMIRQGKAKLVILANNCPALRKSEIEYY 64 (125)
T ss_dssp HHHHHHHHTTCCSEEEECTTSCHHHHHHHHHH
T ss_pred HHHHHHHHcCCceEEEEeCCCCHHHHHHHHHH
Confidence 56667777888999999999988766666654
No 20
>3o85_A Ribosomal protein L7AE; alpha beta sandwich fold, K-turn RNA binding protein, KINK T ribosomal protein; 1.81A {Giardia lamblia}
Probab=26.30 E-value=63 Score=28.34 Aligned_cols=44 Identities=20% Similarity=0.173 Sum_probs=30.7
Q ss_pred HHHHHHHHHcCCCEEEEecCCChhh-HHHHHHHHhhcCceeEEEeCC
Q 008526 438 DCITRLAERAKAPVIYLSTDAAESE-TSLLQSLVVLNGKTIALVKRP 483 (563)
Q Consensus 438 ~qI~~~vk~~~lk~VFIATDA~~~E-~~eLk~lL~~~g~~v~vv~r~ 483 (563)
+++.+.+++-+++-|+||+|+++.+ +..|..+=. ...+|++.-+
T Consensus 37 ~~v~kai~~gka~lViiA~D~~p~~~~~~l~~lc~--~~~VP~~~v~ 81 (122)
T 3o85_A 37 NEALKQVNRGKAELVIIAADADPIEIVLHLPLACE--DKGVPYVFIG 81 (122)
T ss_dssp HHHHHHHHTTCCSEEEEETTCSSGGGGTTHHHHHH--TTTCCEEEES
T ss_pred HHHHHHHHcCCceEEEEeCCCChHHHHHHHHHHHH--HhCCCEEEEC
Confidence 5666677778899999999997655 466666544 2446666544
No 21
>2fc3_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich, ribosome, RNA binding protein; 1.56A {Aeropyrum pernix} SCOP: d.79.3.1 PDB: 3pla_C* 3id5_C* 3hax_D* 2hvy_D* 3hay_D* 3nvi_B 3nmu_C 3nvk_E* 3lwr_C 3lwo_C* 3lwq_C* 3lwp_C 3lwv_C 3hjw_C* 2czw_A 1pxw_A
Probab=25.51 E-value=50 Score=28.80 Aligned_cols=44 Identities=27% Similarity=0.289 Sum_probs=29.7
Q ss_pred HHHHHHHHHcCCCEEEEecCCChhh-HHHHHHHHhhcCceeEEEeCC
Q 008526 438 DCITRLAERAKAPVIYLSTDAAESE-TSLLQSLVVLNGKTIALVKRP 483 (563)
Q Consensus 438 ~qI~~~vk~~~lk~VFIATDA~~~E-~~eLk~lL~~~g~~v~vv~r~ 483 (563)
+++.+.+++-+++-|+||+|+++.+ +..|..+=.. ..+|++..+
T Consensus 34 ~~v~kal~~gka~lViiA~D~~~~~~~~~l~~lc~~--~~Vp~~~v~ 78 (124)
T 2fc3_A 34 NETTKAVERGLAKLVVIAEDVDPPEIVMHLPLLCDE--KKIPYVYVP 78 (124)
T ss_dssp HHHHHHHHTTCCSEEEEETTCSSGGGTTTHHHHHHH--TTCCEEEES
T ss_pred HHHHHHHHcCCceEEEEcCCCChHHHHHHHHHHHHH--cCCCEEEEC
Confidence 5556666777899999999997655 5666665442 346665544
No 22
>1xbi_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich fold, RNA binding protein/structural protein complex; HET: EPE; 1.45A {Methanocaldococcus jannaschii} SCOP: d.79.3.1 PDB: 1ra4_A* 1sds_A 3paf_A
Probab=25.40 E-value=51 Score=28.69 Aligned_cols=44 Identities=23% Similarity=0.257 Sum_probs=29.7
Q ss_pred HHHHHHHHHcCCCEEEEecCCChhh-HHHHHHHHhhcCceeEEEeCC
Q 008526 438 DCITRLAERAKAPVIYLSTDAAESE-TSLLQSLVVLNGKTIALVKRP 483 (563)
Q Consensus 438 ~qI~~~vk~~~lk~VFIATDA~~~E-~~eLk~lL~~~g~~v~vv~r~ 483 (563)
+++.+.+++-+++-|+||+|+++.+ +..|..+=.. ..||++..+
T Consensus 35 ~~v~kai~~gka~lViiA~D~~p~~~~~~l~~lc~~--~~VP~~~v~ 79 (120)
T 1xbi_A 35 NEVTKAVERGIAKLVIIAEDVKPEEVVAHLPYLCEE--KGIPYAYVA 79 (120)
T ss_dssp HHHHHHHHHTCCSEEEEESCCSSGGGTTTHHHHHHH--HTCCEEEES
T ss_pred HHHHHHHHcCCceEEEEcCCCChHHHHHHHHHHHHh--cCCCEEEeC
Confidence 5556666777899999999997755 5556655442 346665544
No 23
>1rlg_A 50S ribosomal protein L7AE; protein-RNA, structural protein/RNA complex; HET: 5BU; 2.70A {Archaeoglobus fulgidus} SCOP: d.79.3.1
Probab=24.79 E-value=48 Score=28.67 Aligned_cols=44 Identities=23% Similarity=0.315 Sum_probs=29.6
Q ss_pred HHHHHHHHHcCCCEEEEecCCChhh-HHHHHHHHhhcCceeEEEeCC
Q 008526 438 DCITRLAERAKAPVIYLSTDAAESE-TSLLQSLVVLNGKTIALVKRP 483 (563)
Q Consensus 438 ~qI~~~vk~~~lk~VFIATDA~~~E-~~eLk~lL~~~g~~v~vv~r~ 483 (563)
+++.+.+++-+++-|+||+|+++.+ +..|..+=.. ..+|++..+
T Consensus 33 ~~v~kal~~gka~lViiA~D~~~~~~~~~l~~lc~~--~~Vp~~~~~ 77 (119)
T 1rlg_A 33 NETTKAVERGLAKLVYIAEDVDPPEIVAHLPLLCEE--KNVPYIYVK 77 (119)
T ss_dssp HHHHHHHTTTCCSEEEEESCCSCSTTTTHHHHHHHH--HTCCEEEES
T ss_pred HHHHHHHHcCCCcEEEEeCCCChHHHHHHHHHHHHH--cCCCEEEeC
Confidence 5556666777899999999997655 5666665442 346665544
No 24
>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*
Probab=20.66 E-value=4.4e+02 Score=25.63 Aligned_cols=98 Identities=9% Similarity=0.097 Sum_probs=56.2
Q ss_pred HHHHHHcCCCEEEEecCCChhhHHHHHHHHhhcCceeEEEeCCCCCCchhhhhHhhhccCCCchhHHHHHhHHHHhcCCc
Q 008526 441 TRLAERAKAPVIYLSTDAAESETSLLQSLVVLNGKTIALVKRPPRNSAEKWDSLLYRHHLEDDSQVEAMLDKTICAMSNV 520 (563)
Q Consensus 441 ~~~vk~~~lk~VFIATDA~~~E~~eLk~lL~~~g~~v~vv~r~~~~~~e~~~~ll~kdg~~~Dg~vvAiIDq~Ica~A~~ 520 (563)
..+++..+++.|+|||-. ....+....++.. |+.| ++-.|.-.+.+ +...+++.+=-.....
T Consensus 59 ~~ll~~~~~D~V~i~tp~-~~h~~~~~~al~~-Gk~v-l~EKP~a~~~~---------------e~~~l~~~a~~~g~~~ 120 (344)
T 3mz0_A 59 DSLLADENVDAVLVTSWG-PAHESSVLKAIKA-QKYV-FCEKPLATTAE---------------GCMRIVEEEIKVGKRL 120 (344)
T ss_dssp HHHHHCTTCCEEEECSCG-GGHHHHHHHHHHT-TCEE-EECSCSCSSHH---------------HHHHHHHHHHHHSSCC
T ss_pred HHHhcCCCCCEEEECCCc-hhHHHHHHHHHHC-CCcE-EEcCCCCCCHH---------------HHHHHHHHHHHHCCEE
Confidence 344455679999999977 5667777888873 6544 23333211111 2245666533222234
Q ss_pred cccccccccchHHHHHHHh-----cCCCCCccccccCCCCc
Q 008526 521 FIGASGSTFTEDIMRLRKD-----WGSTSLCDEYLCQGEEP 556 (563)
Q Consensus 521 FIGtc~STFS~~IkrERdl-----~G~pSsf~e~~c~~~~~ 556 (563)
+.-...-.|.-.+++-|++ +|.+....-..+....|
T Consensus 121 ~~v~~~~r~~p~~~~~k~~i~~g~iG~i~~v~~~~~~~~~~ 161 (344)
T 3mz0_A 121 VQVGFMRRYDSGYVQLKEALDNHVIGEPLMIHCAHRNPTVG 161 (344)
T ss_dssp EEECCGGGGSHHHHHHHHHHHTTTTSSEEEEEEEEECSCCC
T ss_pred EEEecccccCHHHHHHHHHHHcCCCCCcEEEEEEecCCCCC
Confidence 2445667999999888885 56665554444443333
No 25
>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*
Probab=20.64 E-value=4.9e+02 Score=25.31 Aligned_cols=92 Identities=9% Similarity=0.104 Sum_probs=55.5
Q ss_pred CCCChHHHHHHHHHHH-HHcCCCEEEEecCCChhhHHHHHHHHhhcCceeEEEeCCCCC-CchhhhhHhhhccCCCchhH
Q 008526 429 CFYPIPQAADCITRLA-ERAKAPVIYLSTDAAESETSLLQSLVVLNGKTIALVKRPPRN-SAEKWDSLLYRHHLEDDSQV 506 (563)
Q Consensus 429 C~psi~~aa~qI~~~v-k~~~lk~VFIATDA~~~E~~eLk~lL~~~g~~v~vv~r~~~~-~~e~~~~ll~kdg~~~Dg~v 506 (563)
++.+.+++.+.+..+. +..+++.|+|||-. ....+..+++|.. |+.| +...|-. +.+ +.
T Consensus 52 ~~~~~~~ll~~~~~l~~~~~~vD~V~I~tP~-~~H~~~~~~al~a-GkhV--l~EKPla~~~~---------------ea 112 (312)
T 3o9z_A 52 FFTEPEAFEAYLEDLRDRGEGVDYLSIASPN-HLHYPQIRMALRL-GANA--LSEKPLVLWPE---------------EI 112 (312)
T ss_dssp EESCHHHHHHHHHHHHHTTCCCSEEEECSCG-GGHHHHHHHHHHT-TCEE--EECSSSCSCHH---------------HH
T ss_pred eeCCHHHHHHHhhhhcccCCCCcEEEECCCc-hhhHHHHHHHHHC-CCeE--EEECCCCCCHH---------------HH
Confidence 4555776665444443 45689999999998 6677778888874 7655 3333321 111 22
Q ss_pred HHHHhHHHHhcCCccccccccccchHHHHHHHhc
Q 008526 507 EAMLDKTICAMSNVFIGASGSTFTEDIMRLRKDW 540 (563)
Q Consensus 507 vAiIDq~Ica~A~~FIGtc~STFS~~IkrERdl~ 540 (563)
.++++.+=-.....++| ..-.|.-.++.-|++.
T Consensus 113 ~~l~~~a~~~g~~~~v~-~~~R~~p~~~~~k~~i 145 (312)
T 3o9z_A 113 ARLKELEARTGRRVYTV-LQLRVHPSLLALKERL 145 (312)
T ss_dssp HHHHHHHHHHCCCEEEC-CGGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCEEEEE-eehhcCHHHHHHHHHH
Confidence 45666533222223344 4578888888888765
No 26
>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}
Probab=20.10 E-value=3.9e+02 Score=25.46 Aligned_cols=79 Identities=15% Similarity=0.261 Sum_probs=50.3
Q ss_pred CCCEEEEecCCChhhHHHHHHHHhhcCceeEEEeCCCCCCchhhhhHhhhccCCCchhHHHHHhHHHHhcCCcccccccc
Q 008526 448 KAPVIYLSTDAAESETSLLQSLVVLNGKTIALVKRPPRNSAEKWDSLLYRHHLEDDSQVEAMLDKTICAMSNVFIGASGS 527 (563)
Q Consensus 448 ~lk~VFIATDA~~~E~~eLk~lL~~~g~~v~vv~r~~~~~~e~~~~ll~kdg~~~Dg~vvAiIDq~Ica~A~~FIGtc~S 527 (563)
+++.|+|||-. ....+.+..++.. |+.| ++-.|.-.+.+ +...+++.+= .+...+.-...-
T Consensus 66 ~~D~V~i~tp~-~~h~~~~~~al~~-gk~v-l~EKP~~~~~~---------------~~~~l~~~a~-~~g~~~~v~~~~ 126 (308)
T 3uuw_A 66 KCDCIFLHSST-ETHYEIIKILLNL-GVHV-YVDKPLASTVS---------------QGEELIELST-KKNLNLMVGFNR 126 (308)
T ss_dssp TCSEEEECCCG-GGHHHHHHHHHHT-TCEE-EECSSSSSSHH---------------HHHHHHHHHH-HHTCCEEECCGG
T ss_pred cCCEEEEeCCc-HhHHHHHHHHHHC-CCcE-EEcCCCCCCHH---------------HHHHHHHHHH-HcCCEEEEeecc
Confidence 78999999998 5567777788863 6544 22223211111 2245555533 233456666778
Q ss_pred ccchHHHHHHHhcCCCCC
Q 008526 528 TFTEDIMRLRKDWGSTSL 545 (563)
Q Consensus 528 TFS~~IkrERdl~G~pSs 545 (563)
.|.-.+++-|+.+|.+..
T Consensus 127 r~~p~~~~~~~~ig~~~~ 144 (308)
T 3uuw_A 127 RFCPMYKEIKNNATEIVS 144 (308)
T ss_dssp GGCHHHHHHHHHCCSEEE
T ss_pred ccCHHHHHHHHHcCCCcE
Confidence 999999999999887543
Done!