Query 008526
Match_columns 563
No_of_seqs 144 out of 175
Neff 3.8
Searched_HMMs 13730
Date Mon Mar 25 05:37:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008526.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/008526hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1t0kb_ d.79.3.1 (B:) Eukaryot 59.3 6.2 0.00045 31.3 5.2 42 438-481 20-61 (97)
2 d2bo1a1 d.79.3.1 (A:1-100) Euk 53.8 7.6 0.00056 30.9 4.8 34 438-471 21-54 (100)
3 d1w3ex1 d.79.3.1 (X:1-98) Euka 53.7 9.2 0.00067 30.4 5.3 42 438-481 21-62 (98)
4 d1zh8a1 c.2.1.3 (A:4-131,A:276 34.0 84 0.0061 26.0 8.8 34 442-477 61-94 (181)
5 d1rrma_ e.22.1.2 (A:) Lactalde 25.9 34 0.0025 32.2 5.2 43 435-477 16-61 (385)
6 d1khba2 c.109.1.1 (A:10-259) C 23.9 38 0.0028 31.6 4.9 45 434-479 16-60 (250)
7 d2g7oa1 a.241.1.1 (A:60-127) T 22.4 30 0.0022 26.3 3.2 25 158-182 15-39 (68)
8 d2fcja1 c.136.1.1 (A:1-114) Hy 20.3 52 0.0038 26.2 4.5 34 438-471 39-75 (114)
9 d1vh1a_ c.68.1.13 (A:) CMP:2-k 19.7 51 0.0037 28.0 4.6 22 436-458 29-50 (246)
10 d2aifa1 d.79.3.1 (A:16-130) Ri 19.6 45 0.0033 26.7 4.0 44 438-483 30-74 (115)
No 1
>d1t0kb_ d.79.3.1 (B:) Eukaryotic ribosomal protein L30 (L30e) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=59.31 E-value=6.2 Score=31.26 Aligned_cols=42 Identities=12% Similarity=0.172 Sum_probs=32.3
Q ss_pred HHHHHHHHHcCCCEEEEecCCChhhHHHHHHHHhhcCceeEEEe
Q 008526 438 DCITRLAERAKAPVIYLSTDAAESETSLLQSLVVLNGKTIALVK 481 (563)
Q Consensus 438 ~qI~~~vk~~~lk~VFIATDA~~~E~~eLk~lL~~~g~~v~vv~ 481 (563)
++..+.+++-+++-|+||+|+++...+.+..+-.. ..+|++.
T Consensus 20 ~~v~k~i~~gkaklVilA~D~~~~~~~~i~~~~~~--~~vp~~~ 61 (97)
T d1t0kb_ 20 KSTVKSLRQGKSKLIIIAANTPVLRKSELEYYAML--SKTKVYY 61 (97)
T ss_dssp HHHHHHHHHTCCSEEEECTTCCHHHHHHHHHHHHH--HTCEEEE
T ss_pred HHHHHHHHcCCCcEEEEeCCCCHHHHHHHHHHHHh--cCCceEE
Confidence 56667777788999999999988888888887652 4466544
No 2
>d2bo1a1 d.79.3.1 (A:1-100) Eukaryotic ribosomal protein L30 (L30e) {Archaeon Thermococcus celer [TaxId: 2264]}
Probab=53.77 E-value=7.6 Score=30.92 Aligned_cols=34 Identities=6% Similarity=0.037 Sum_probs=28.4
Q ss_pred HHHHHHHHHcCCCEEEEecCCChhhHHHHHHHHh
Q 008526 438 DCITRLAERAKAPVIYLSTDAAESETSLLQSLVV 471 (563)
Q Consensus 438 ~qI~~~vk~~~lk~VFIATDA~~~E~~eLk~lL~ 471 (563)
+++.+.+++-+++-|+||+|+++...+.|..+-.
T Consensus 21 ~~v~kai~~gkaklVilA~D~~~~~~~~i~~~c~ 54 (100)
T d2bo1a1 21 RKTVQSLKMGGSKLIIIARNTRPDRKEDLEYYAR 54 (100)
T ss_dssp HHHHHHHHTTCCSEEEEETTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHH
Confidence 5667777888899999999998888888877765
No 3
>d1w3ex1 d.79.3.1 (X:1-98) Eukaryotic ribosomal protein L30 (L30e) {Archaeon Thermococcus celer [TaxId: 2264]}
Probab=53.72 E-value=9.2 Score=30.43 Aligned_cols=42 Identities=17% Similarity=0.133 Sum_probs=30.4
Q ss_pred HHHHHHHHHcCCCEEEEecCCChhhHHHHHHHHhhcCceeEEEe
Q 008526 438 DCITRLAERAKAPVIYLSTDAAESETSLLQSLVVLNGKTIALVK 481 (563)
Q Consensus 438 ~qI~~~vk~~~lk~VFIATDA~~~E~~eLk~lL~~~g~~v~vv~ 481 (563)
+++.+.+++-+++-|+||+|+++.-++.+..+=.. ..+|++.
T Consensus 21 ~~v~kal~~gkaklVilA~D~~~~~~~~i~~~c~~--~~Ip~~~ 62 (98)
T d1w3ex1 21 RKSIQYAKMGGAKLIIVARNARPDIKEDIEYYARL--SGIAVYE 62 (98)
T ss_dssp HHHHHHHHHTCCSEEEEETTSCHHHHHHHHHHHHH--HTCEEEE
T ss_pred HHHHHHHHcCCccEEEEECCCCHHHHHHHHHHHHh--cCCCeEE
Confidence 55666677789999999999987777777665542 3466643
No 4
>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}
Probab=34.04 E-value=84 Score=25.96 Aligned_cols=34 Identities=15% Similarity=0.205 Sum_probs=25.5
Q ss_pred HHHHHcCCCEEEEecCCChhhHHHHHHHHhhcCcee
Q 008526 442 RLAERAKAPVIYLSTDAAESETSLLQSLVVLNGKTI 477 (563)
Q Consensus 442 ~~vk~~~lk~VFIATDA~~~E~~eLk~lL~~~g~~v 477 (563)
++++..+++.|+|||.. ....+.++.++.. |+.|
T Consensus 61 ell~~~~id~v~I~tp~-~~h~~~~~~al~~-gk~V 94 (181)
T d1zh8a1 61 ELLESGLVDAVDLTLPV-ELNLPFIEKALRK-GVHV 94 (181)
T ss_dssp HHHHSSCCSEEEECCCG-GGHHHHHHHHHHT-TCEE
T ss_pred ccccccccceeeccccc-ccccccccccccc-chhh
Confidence 44566789999999987 6677788888874 6544
No 5
>d1rrma_ e.22.1.2 (A:) Lactaldehyde reductase FucO {Escherichia coli [TaxId: 562]}
Probab=25.92 E-value=34 Score=32.19 Aligned_cols=43 Identities=14% Similarity=0.056 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCChh---hHHHHHHHHhhcCcee
Q 008526 435 QAADCITRLAERAKAPVIYLSTDAAES---ETSLLQSLVVLNGKTI 477 (563)
Q Consensus 435 ~aa~qI~~~vk~~~lk~VFIATDA~~~---E~~eLk~lL~~~g~~v 477 (563)
.+.++|...++++|.++++|-||..-. ..+.+++.|...|-.+
T Consensus 16 g~l~~l~~~l~~~G~k~~Livt~~~~~~~g~~~~v~~~L~~~gi~~ 61 (385)
T d1rrma_ 16 GAVGALTDEVKRRGYQKALIVTDKTLVQCGVVAKVTDKMDAAGLAW 61 (385)
T ss_dssp TGGGGHHHHHHHHTCCEEEEECBHHHHHTTHHHHHHHHHHHTTCEE
T ss_pred CHHHHHHHHHHHcCCCEEEEEECcchhhCcHHHHHHHHHHHcCCeE
Confidence 356788888999999999999996322 3577888887545434
No 6
>d1khba2 c.109.1.1 (A:10-259) Cytosolic phosphoenolpyruvate carboxykinase (GTP-hydrolyzing) {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.93 E-value=38 Score=31.59 Aligned_cols=45 Identities=18% Similarity=0.147 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecCCChhhHHHHHHHHhhcCceeEE
Q 008526 434 PQAADCITRLAERAKAPVIYLSTDAAESETSLLQSLVVLNGKTIAL 479 (563)
Q Consensus 434 ~~aa~qI~~~vk~~~lk~VFIATDA~~~E~~eLk~lL~~~g~~v~v 479 (563)
+.+.+.|.++++-.+.+.|||+|++ +.|.+.|.+.+...|..++.
T Consensus 16 ~~v~~~v~e~~~L~~Pd~V~~cdGS-~eE~~~l~~~~v~~G~~~~L 60 (250)
T d1khba2 16 QAVREFLENNAELCQPDHIHICDGS-EEENGRLLGQMEEEGILRRL 60 (250)
T ss_dssp HHHHHHHHHHHHHHCCSEEEECCCC-HHHHHHHHHHHHHHTSCEEC
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCC-HHHHHHHHHHHHHcCCcccc
Confidence 3467788888888999999999999 66777777766545765544
No 7
>d2g7oa1 a.241.1.1 (A:60-127) TraM {Escherichia coli [TaxId: 562]}
Probab=22.36 E-value=30 Score=26.27 Aligned_cols=25 Identities=32% Similarity=0.306 Sum_probs=20.4
Q ss_pred HHhhhhhhHHHHHHHHhCCCccCCC
Q 008526 158 VLLNQISLNRQIEQILLSPHKVSNF 182 (563)
Q Consensus 158 al~~qi~~n~~~~~~~~~~~~~~~~ 182 (563)
+|--|.+.||-+----||||-+||-
T Consensus 15 vvKTQ~s~~KiLGI~~lSPHvsgnp 39 (68)
T d2g7oa1 15 VVKTQSSVAKILGIESLSPHVSGNS 39 (68)
T ss_dssp HHHHHHHHHHHHHHHHTCGGGTTCG
T ss_pred HHHHHHHHHHHhcccccCcccCCCc
Confidence 4567999999777777999999974
No 8
>d2fcja1 c.136.1.1 (A:1-114) Hypothetical protein RBSTP2199 {Bacillus stearothermophilus [TaxId: 1422]}
Probab=20.30 E-value=52 Score=26.21 Aligned_cols=34 Identities=21% Similarity=0.287 Sum_probs=24.3
Q ss_pred HHHHHHHHHcCCCEEEEecCCChh---hHHHHHHHHh
Q 008526 438 DCITRLAERAKAPVIYLSTDAAES---ETSLLQSLVV 471 (563)
Q Consensus 438 ~qI~~~vk~~~lk~VFIATDA~~~---E~~eLk~lL~ 471 (563)
++|..+.+..+.+.|+|++|.++. ..++|.+.|+
T Consensus 39 ~~~~~l~~~~~~~~Iii~~D~D~aG~~~a~~l~~~l~ 75 (114)
T d2fcja1 39 ARLEELADELEGYDVYLLADADEAGEKLRRQFRRMFP 75 (114)
T ss_dssp HHHHHHHHHTTTSEEEEECCSSHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHHHHCC
Confidence 455555556677899999999773 4566777775
No 9
>d1vh1a_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Escherichia coli, KdsB [TaxId: 562]}
Probab=19.74 E-value=51 Score=27.96 Aligned_cols=22 Identities=23% Similarity=0.292 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHcCCCEEEEecCC
Q 008526 436 AADCITRLAERAKAPVIYLSTDA 458 (563)
Q Consensus 436 aa~qI~~~vk~~~lk~VFIATDA 458 (563)
+...|.+. ++.+++.|+||||.
T Consensus 29 I~~~i~~a-~~s~i~~iiVsTd~ 50 (246)
T d1vh1a_ 29 IVHVLERA-RESGAERIIVATDH 50 (246)
T ss_dssp HHHHHHHH-HHTTCSEEEEEESC
T ss_pred HHHHHHHH-HHcCCCcEEEEecC
Confidence 44445554 44589999999998
No 10
>d2aifa1 d.79.3.1 (A:16-130) Ribosomal protein L7ae {Cryptosporidium parvum [TaxId: 5807]}
Probab=19.64 E-value=45 Score=26.71 Aligned_cols=44 Identities=23% Similarity=0.184 Sum_probs=28.6
Q ss_pred HHHHHHHHHcCCCEEEEecCCChhh-HHHHHHHHhhcCceeEEEeCC
Q 008526 438 DCITRLAERAKAPVIYLSTDAAESE-TSLLQSLVVLNGKTIALVKRP 483 (563)
Q Consensus 438 ~qI~~~vk~~~lk~VFIATDA~~~E-~~eLk~lL~~~g~~v~vv~r~ 483 (563)
+++.+.+++-+++-|+||+|+...+ +..|..+=. ...+|+++..
T Consensus 30 ~~v~k~i~~g~a~lViiA~D~~p~~~~~~i~~~c~--~~~ip~~~~~ 74 (115)
T d2aifa1 30 NEATKALNRGIAEIVLLAADAEPLEILLHLPLVCE--DKNTPYVFVR 74 (115)
T ss_dssp HHHHHHHHTTCEEEEEEETTCSCHHHHHHHHHHHH--HTTCCEEEES
T ss_pred HHHHHHHHcCCCcEEEEeCCCCchhHHHHHHHHHh--cCCCCEEEeC
Confidence 5556666777899999999996443 444555443 2456666655
Done!