BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008527
(562 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IYG|H Chain H, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 515
Score = 696 bits (1796), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/518 (65%), Positives = 407/518 (78%), Gaps = 3/518 (0%)
Query: 13 KEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLL 72
KEGTD+SQG QLVSNI+AC +A+ VR+TLGPRGMDKLI D +G TISNDGATI+KLL
Sbjct: 1 KEGTDSSQGIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGATILKLL 60
Query: 73 DIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNAS 132
D+VHPAAK LVDIAKSQD+EVGDGTT+V LLAAEFL++ KP++E+G+HPQ +IR+FR A+
Sbjct: 61 DVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTAT 120
Query: 133 YKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKEFFASMVVDAVGAIGDG 192
A+ K+KE+A +++ + E+++LL KCA T LSSKLI +K FFA MVVDAV + D
Sbjct: 121 QLAVNKIKEIAVTVKKEDKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVVDAVMMLDDL 180
Query: 193 DRLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFXXXXXXXXXXXXXXXXX 252
+L MIGIKKV GG + +S LV GVAFKKTFSYAGFE QPKK+
Sbjct: 181 LQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYHNPMIALLNVELELKAE 240
Query: 253 XXXAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIF 312
AEIR+ YQ+IVDAEWNI+YDKL+K SGAKVVLS+L IGD+ATQYFADRD+F
Sbjct: 241 KDNAEIRVHTVEDYQAIVDAEWNILYDKLEKIHHSGAKVVLSKLPIGDVATQYFADRDMF 300
Query: 313 CAGRVAEEDLLRVAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRT 372
CAGRV EEDL R A GG++QTSVN + +VLG C+ FEE Q+G ER+N F+GCP +T
Sbjct: 301 CAGRVPEEDLKRTMMACGGSIQTSVNALSSDVLGRCQVFEETQIGGERYNFFTGCPKAKT 360
Query: 373 ATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAG 432
TI+LRGGA+QF+EE ERSLHDAIMIVRRA KN +VVAGGGAI+ME+SKYLR SR I G
Sbjct: 361 CTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIPG 420
Query: 433 KSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIAD 492
K Q I +YAKALE+IPRQLCDNAGFDAT++LNKLR +HA G YGVDINT IAD
Sbjct: 421 KQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHAQG---GMWYGVDINTEDIAD 477
Query: 493 SFANFVWEPAVVKINAINAATEAACLILSVDETVKNPK 530
+F FVWEPA+V+INA+ AA+EAACLI+SVDET+KNP+
Sbjct: 478 NFEAFVWEPAMVRINALTAASEAACLIVSVDETIKNPR 515
>pdb|3P9D|G Chain G, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|O Chain O, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|GG Chain g, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|OO Chain o, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|G Chain G, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|O Chain O, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|GG Chain g, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|OO Chain o, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 550
Score = 601 bits (1549), Expect = e-172, Method: Compositional matrix adjust.
Identities = 294/523 (56%), Positives = 381/523 (72%), Gaps = 5/523 (0%)
Query: 7 PQIILLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGA 66
P I++LKEGTD SQGK Q++SNINAC AV + ++ TLGP G D LI TISNDGA
Sbjct: 8 PTIVVLKEGTDASQGKGQIISNINACVAVQEALKPTLGPLGSDILIVTSNQKTTISNDGA 67
Query: 67 TIMKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIR 126
TI+KLLD+VHPAAK LVDI+++QD+EVGDGTT+V +LA E ++EAKPF+E+G+ +++
Sbjct: 68 TILKLLDVVHPAAKTLVDISRAQDAEVGDGTTSVTILAGELMKEAKPFLEEGISSHLIMK 127
Query: 127 SFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKEFFASMVVDAV 186
+R A A++K+ ELA I + + LL +CA T +SSKLI +FF M VDAV
Sbjct: 128 GYRKAVSLAVEKINELAVDITSEK-SSGRELLERCARTAMSSKLIHNNADFFVKMCVDAV 186
Query: 187 GAIGDGDRLN-MIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFXXXXXXXXXX 245
++ D + +IGIKK+PGG M +S +NGVAFKKTFSYAGFEQQPKKF
Sbjct: 187 LSLDRNDLDDKLIGIKKIPGGAMEESLFINGVAFKKTFSYAGFEQQPKKFNNPKILSLNV 246
Query: 246 XXXXXXXXXXAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQY 305
AE+R+ YQ+IVDAEW +I++KL + ++GA +VLS+L IGDLATQ+
Sbjct: 247 ELELKAEKDNAEVRVEHVEDYQAIVDAEWQLIFEKLRQVEETGANIVLSKLPIGDLATQF 306
Query: 306 FADRDIFCAGRVAEEDLLRVAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFS 365
FADR+IFCAGRV+ +D+ RV A GG++Q++ +++ E LGTC FEE Q+G+ER+N+F
Sbjct: 307 FADRNIFCAGRVSADDMNRVIQAVGGSIQSTTSDIKPEHLGTCALFEEMQIGSERYNLFQ 366
Query: 366 GCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQ 425
GCP +T T++LRGGA+Q I E ERSLHDAIMIV+RA +N +VAGGGA +ME+SK LR
Sbjct: 367 GCPQAKTCTLLLRGGAEQVIAEVERSLHDAIMIVKRALQNKLIVAGGGATEMEVSKCLRD 426
Query: 426 ESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDI 485
S+ IAGK Q IN++AKALEVIPRQLC+NAGFDA ++LNKLR H+ GE YGV
Sbjct: 427 YSKTIAGKQQMIINAFAKALEVIPRQLCENAGFDAIEILNKLRLAHS--KGEKW-YGVVF 483
Query: 486 NTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKN 528
T I D+FA FVWEPA+VKINA+N+ATEA LILSVDET+ N
Sbjct: 484 ETENIGDNFAKFVWEPALVKINALNSATEATNLILSVDETITN 526
>pdb|3KO1|A Chain A, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|B Chain B, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|C Chain C, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|D Chain D, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|E Chain E, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|F Chain F, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|G Chain G, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|H Chain H, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|I Chain I, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
Length = 553
Score = 366 bits (939), Expect = e-101, Method: Compositional matrix adjust.
Identities = 199/524 (37%), Positives = 312/524 (59%), Gaps = 15/524 (2%)
Query: 9 IILLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATI 68
+I+LKEG+ + GK + +NI A AV + ++ST GPRGMDK++ D G +TI+NDGATI
Sbjct: 16 VIILKEGSSRTYGKEAVRANIAAVKAVEEALKSTYGPRGMDKMLVDSLGDITITNDGATI 75
Query: 69 MKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSF 128
+ +D+ HPAAK+LV IAK QD E DGT T V+ + E +++A+ + VHP +I +
Sbjct: 76 LDKMDLQHPAAKLLVQIAKGQDEETADGTKTAVIFSGELVKKAEDLLYKDVHPTIIISGY 135
Query: 129 RNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKEFFASMVVDAVGA 188
+ A A+Q ++ELA+++ + LL K A T+LSSK + G +E+ A +VV AV
Sbjct: 136 KKAEEVALQTIQELAQTVSINDTD----LLRKIAMTSLSSKAVAGAREYIADIVVKAVTQ 191
Query: 189 IGD--GDR----LNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFXXXXXXX 242
+ + GD+ L+ I I K GG++ D+ LV G+ K + G PK+
Sbjct: 192 VAELRGDKWYVDLDNIQIVKKAGGSINDTQLVYGIVVDKEVVHPGM---PKRLENAKIAL 248
Query: 243 XXXXXXXXXXXXXAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLA 302
AEIR++DP+Q Q +D E N+I +K+DK + +GA V++ + I ++A
Sbjct: 249 IDASLEVEKPELDAEIRINDPTQMQKFLDEEENLIKEKVDKILATGANVIICQKGIDEVA 308
Query: 303 TQYFADRDIFCAGRVAEEDLLRVAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFN 362
Y A + + R + DL ++A ATGG V ++++ + ++ LG EER+VG ++
Sbjct: 309 QSYLAKKGVLAVRRAKKSDLEKLARATGGRVVSNIDEISEQDLGYASLIEERKVGEDKMV 368
Query: 363 IFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKY 422
G + ++ +I++RGG ++ ++E ER+L DA+ V K+ +AGGGA+++EI+K
Sbjct: 369 FVEGAKNPKSISILIRGGLERLVDETERALRDALGTVADVIKDGRAIAGGGAVEIEIAKK 428
Query: 423 LRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYG 482
LR+ + + GK Q + +YA ALE + L +NAGFD D+L KLR H + YG
Sbjct: 429 LRKYAPQVGGKEQLAVEAYANALESLVSILIENAGFDPIDLLMKLRSTHENENNKW--YG 486
Query: 483 VDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETV 526
+D+ G D + V EPA+VK+NAI AATEAA L+L +D+ V
Sbjct: 487 IDLYAGQPVDMWQKGVIEPALVKMNAIKAATEAATLVLRIDDVV 530
>pdb|1A6D|A Chain A, Thermosome From T. Acidophilum
pdb|1A6E|A Chain A, Thermosome-Mg-Adp-Alf3 Complex
Length = 545
Score = 335 bits (860), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 193/533 (36%), Positives = 305/533 (57%), Gaps = 22/533 (4%)
Query: 6 QPQIILLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDG 65
Q I++LKEGT QGK +NI A A+AD VR+TLGP+GMDK++ D G + ISNDG
Sbjct: 5 QVPILVLKEGTQREQGKNAQRNNIEAAKAIADAVRTTLGPKGMDKMLVDSIGDIIISNDG 64
Query: 66 ATIMKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLI 125
ATI+K +D+ HP AK++V+++K+QD+ VGDGTTT V+L+ E L++A+ ++ GVHP +
Sbjct: 65 ATILKEMDVEHPTAKMIVEVSKAQDTAVGDGTTTAVVLSGELLKQAETLLDQGVHPTVIS 124
Query: 126 RSFRNASYKAIQKVKELA-KSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKEFFASMVVD 184
+R A +A + + E+A KS + +L K A T LS K G +F A +VV
Sbjct: 125 NGYRLAVNEARKIIDEIAEKSTDDATLR-------KIALTALSGKNTGLSNDFLADLVVK 177
Query: 185 AVGAIG---DG----DRLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFXX 237
AV A+ DG D N I + K GG++ D+ ++G+ K ++ + P
Sbjct: 178 AVNAVAEVRDGKTIVDTAN-IKVDKKNGGSVNDTQFISGIVIDKEKVHS---KMPDVVKN 233
Query: 238 XXXXXXXXXXXXXXXXXXAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLA 297
A++++SDPS+ Q ++ E N ++K +SGA VVL +
Sbjct: 234 AKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGANVVLCQKG 293
Query: 298 IGDLATQYFADRDIFCAGRVAEEDLLRVAAATGGTVQTSVNNVVDEVLGTCEHFEERQVG 357
I D+A Y A I+ RV + D+ ++A ATG + T ++++ VLG E EER++G
Sbjct: 294 IDDVAQHYLAKEGIYAVRRVKKSDMEKLAKATGAKIVTDLDDLTPSVLGEAETVEERKIG 353
Query: 358 NERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDM 417
++R GC + + +I++RGG D + E ER+L+DAI +V ++ + GGGA++
Sbjct: 354 DDRMTFVMGCKNPKAVSILIRGGTDHVVSEVERALNDAIRVVAITKEDGKFLWGGGAVEA 413
Query: 418 EISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGE 477
E++ L + + ++ G+ Q I ++AKALE+IPR L +NAG D + L KL+ A
Sbjct: 414 ELAMRLAKYANSVGGREQLAIEAFAKALEIIPRTLAENAGIDPINTLIKLK---ADDEKG 470
Query: 478 GAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPK 530
GVD++ G+ D A V +P VK +A+ +A E A +IL +D+ + + K
Sbjct: 471 RISVGVDLDNNGVGDMKAKGVVDPLRVKTHALESAVEVATMILRIDDVIASKK 523
>pdb|3LOS|A Chain A, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|B Chain B, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|C Chain C, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|D Chain D, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|E Chain E, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|F Chain F, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|G Chain G, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|H Chain H, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|I Chain I, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|J Chain J, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|K Chain K, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|L Chain L, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|M Chain M, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|N Chain N, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|O Chain O, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|P Chain P, Atomic Model Of Mm-Cpn In The Closed State
pdb|3KFB|A Chain A, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|B Chain B, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|C Chain C, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|D Chain D, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|E Chain E, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|F Chain F, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|G Chain G, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|H Chain H, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3RUQ|A Chain A, Crystal Structure Of Cpn-Wt In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUQ|B Chain B, Crystal Structure Of Cpn-Wt In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUQ|C Chain C, Crystal Structure Of Cpn-Wt In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUQ|D Chain D, Crystal Structure Of Cpn-Wt In Complex With Adp From
Methanococcus Maripaludis
Length = 543
Score = 315 bits (808), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 183/530 (34%), Positives = 300/530 (56%), Gaps = 12/530 (2%)
Query: 5 MQPQIILLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISND 64
M Q +L E G+ NI A +A+ VRSTLGP+GMDK++ DD G V ++ND
Sbjct: 1 MSQQPGVLPENMKRYMGRDAQRMNILAGRIIAETVRSTLGPKGMDKMLVDDLGDVVVTND 60
Query: 65 GATIMKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNL 124
G TI++ + + HPAAK+L+++AK+Q+ EVGDGTTT V++A E LR+A+ ++ VHP +
Sbjct: 61 GVTILREMSVEHPAAKMLIEVAKTQEKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIV 120
Query: 125 IRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKEFFASMVVD 184
++ ++ A+ QK +EL K+I + + K +L+K A T+++ K KE A ++V+
Sbjct: 121 VKGYQAAA----QKAQELLKTIACEVGAQDKEILTKIAMTSITGKGAEKAKEKLAEIIVE 176
Query: 185 AVGAIGDGD---RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFXXXXXX 241
AV A+ D + ++I I+K G ++ D+ L+ GV K A Q PKK
Sbjct: 177 AVSAVVDDEGKVDKDLIKIEKKSGASIDDTELIKGVLVDKERVSA---QMPKKVTDAKIA 233
Query: 242 XXXXXXXXXXXXXXAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDL 301
AEIR++DP++ ++ E ++ D + + SGA V+ + I DL
Sbjct: 234 LLNCAIEIKETETDAEIRITDPAKLMEFIEQEEKMLKDMVAEIKASGANVLFCQKGIDDL 293
Query: 302 ATQYFADRDIFCAGRVAEEDLLRVAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERF 361
A Y A I A RV + D+ ++A ATG V T++ ++ + LG EER++ +
Sbjct: 294 AQHYLAKEGIVAARRVKKSDMEKLAKATGANVITNIKDLSAQDLGDAGLVEERKISGDSM 353
Query: 362 NIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISK 421
C + T+++RG + IEE R++ DA+ +V ++ +V+GGG+ ++E+S
Sbjct: 354 IFVEECKHPKAVTMLIRGTTEHVIEEVARAVDDAVGVVGCTIEDGRIVSGGGSTEVELSM 413
Query: 422 YLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPY 481
LR+ + I+G+ Q + ++A ALEVIPR L +NAG DA ++L K+R HA + A
Sbjct: 414 KLREYAEGISGREQLAVRAFADALEVIPRTLAENAGLDAIEILVKVRAAHASNGNKCA-- 471
Query: 482 GVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPKV 531
G+++ TG + D N V EP VK AI +A E+ ++L +D+ + K+
Sbjct: 472 GLNVFTGAVEDMCENGVVEPLRVKTQAIQSAAESTEMLLRIDDVIAAEKL 521
>pdb|3IZH|A Chain A, Mm-Cpn D386a With Atp
pdb|3IZH|B Chain B, Mm-Cpn D386a With Atp
pdb|3IZH|C Chain C, Mm-Cpn D386a With Atp
pdb|3IZH|D Chain D, Mm-Cpn D386a With Atp
pdb|3IZH|E Chain E, Mm-Cpn D386a With Atp
pdb|3IZH|F Chain F, Mm-Cpn D386a With Atp
pdb|3IZH|G Chain G, Mm-Cpn D386a With Atp
pdb|3IZH|H Chain H, Mm-Cpn D386a With Atp
pdb|3IZH|I Chain I, Mm-Cpn D386a With Atp
pdb|3IZH|J Chain J, Mm-Cpn D386a With Atp
pdb|3IZH|K Chain K, Mm-Cpn D386a With Atp
pdb|3IZH|L Chain L, Mm-Cpn D386a With Atp
pdb|3IZH|M Chain M, Mm-Cpn D386a With Atp
pdb|3IZH|N Chain N, Mm-Cpn D386a With Atp
pdb|3IZH|O Chain O, Mm-Cpn D386a With Atp
pdb|3IZH|P Chain P, Mm-Cpn D386a With Atp
pdb|3IZM|A Chain A, Mm-Cpn Wildtype With Atp
pdb|3IZM|B Chain B, Mm-Cpn Wildtype With Atp
pdb|3IZM|C Chain C, Mm-Cpn Wildtype With Atp
pdb|3IZM|D Chain D, Mm-Cpn Wildtype With Atp
pdb|3IZM|E Chain E, Mm-Cpn Wildtype With Atp
pdb|3IZM|F Chain F, Mm-Cpn Wildtype With Atp
pdb|3IZM|G Chain G, Mm-Cpn Wildtype With Atp
pdb|3IZM|H Chain H, Mm-Cpn Wildtype With Atp
pdb|3IZM|I Chain I, Mm-Cpn Wildtype With Atp
pdb|3IZM|J Chain J, Mm-Cpn Wildtype With Atp
pdb|3IZM|K Chain K, Mm-Cpn Wildtype With Atp
pdb|3IZM|L Chain L, Mm-Cpn Wildtype With Atp
pdb|3IZM|M Chain M, Mm-Cpn Wildtype With Atp
pdb|3IZM|N Chain N, Mm-Cpn Wildtype With Atp
pdb|3IZM|O Chain O, Mm-Cpn Wildtype With Atp
pdb|3IZM|P Chain P, Mm-Cpn Wildtype With Atp
Length = 513
Score = 313 bits (803), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 177/502 (35%), Positives = 291/502 (57%), Gaps = 12/502 (2%)
Query: 28 NINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAK 87
NI A +A+ VRSTLGP+GMDK++ DD G V ++NDG TI++ + + HPAAK+L+++AK
Sbjct: 18 NILAGRIIAETVRSTLGPKGMDKMLVDDLGDVVVTNDGVTILREMSVEHPAAKMLIEVAK 77
Query: 88 SQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIE 147
+Q+ EVGDGTTT V++A E LR+A+ ++ VHP +++ ++ A+ QK +EL K+I
Sbjct: 78 TQEKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQAAA----QKAQELLKTIA 133
Query: 148 GQSLEEKKRLLSKCAATTLSSKLIGGEKEFFASMVVDAVGAIGDGD---RLNMIGIKKVP 204
+ + K +L+K A T+++ K KE A ++V+AV A+ D + ++I I+K
Sbjct: 134 CEVGAQDKEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSAVVDDEGKVDKDLIKIEKKS 193
Query: 205 GGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFXXXXXXXXXXXXXXXXXXXXAEIRLSDPS 264
G ++ D+ L+ GV K A Q PKK AEIR++DP+
Sbjct: 194 GASIDDTELIKGVLVDKERVSA---QMPKKVTDAKIALLNCAIEIKETETDAEIRITDPA 250
Query: 265 QYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLR 324
+ ++ E ++ D + + SGA V+ + I DLA Y A I A RV + D+ +
Sbjct: 251 KLMEFIEQEEKMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGIVAARRVKKSDMEK 310
Query: 325 VAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQF 384
+A ATG V T++ ++ + LG EER++ + C + T+++RG +
Sbjct: 311 LAKATGANVITNIKDLSAQDLGDAGLVEERKISGDSMIFVEECKHPKAVTMLIRGTTEHV 370
Query: 385 IEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKA 444
IEE R++ DA+ +V ++ +V+GGG+ ++E+S LR+ + I+G+ Q + ++A A
Sbjct: 371 IEEVARAVDDAVGVVGCTIEDGRIVSGGGSTEVELSMKLREYAEGISGREQLAVRAFADA 430
Query: 445 LEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVV 504
LEVIPR L +NAG DA ++L K+R HA + A G+++ TG + D N V EP V
Sbjct: 431 LEVIPRTLAENAGLDAIEILVKVRAAHASNGNKCA--GLNVFTGAVEDMCENGVVEPLRV 488
Query: 505 KINAINAATEAACLILSVDETV 526
K AI +A E+ ++L +D+ +
Sbjct: 489 KTQAIQSAAESTEMLLRIDDVI 510
>pdb|1Q3R|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form Of Single Mutant)
pdb|1Q3R|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form Of Single Mutant)
pdb|1Q3R|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form Of Single Mutant)
pdb|1Q3R|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form Of Single Mutant)
Length = 548
Score = 311 bits (798), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 180/532 (33%), Positives = 291/532 (54%), Gaps = 16/532 (3%)
Query: 1 MAAMMQPQIILLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVT 60
MA + +++L EGT G+ NI A +A+ VR+TLGP+GMDK++ D G +
Sbjct: 1 MAQLSGQPVVILPEGTQRYVGRDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIV 60
Query: 61 ISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVH 120
++NDGATI+ +D+ HPAAK++V++AK+QD E GDGTTT V++A E LR+A+ ++ +H
Sbjct: 61 VTNDGATILDKIDLQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNIH 120
Query: 121 PQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKEFFAS 180
P + + + A+ KA + + E+A ++ E L K AAT+++ K KE A
Sbjct: 121 PSIITKGYALAAEKAQEILDEIAIRVDPDDEE----TLLKIAATSITGKNAESHKELLAK 176
Query: 181 MVVDAVGAIG---DGDR---LNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKK 234
+ V+AV + DG L+ I +K G + +S LV GV K + + PK+
Sbjct: 177 LAVEAVKQVAEKKDGKYVVDLDNIKFEKKAGEGVEESELVRGVVIDKEVVHP---RMPKR 233
Query: 235 FXXXXXXXXXXXXXXXXXXXXAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLS 294
A+I ++ P Q S ++ E ++ D +D Q+GA VV
Sbjct: 234 VENAKIALINEALEVKKTETDAKINITSPDQLMSFLEQEEKMLKDMVDHIAQTGANVVFV 293
Query: 295 RLAIGDLATQYFADRDIFCAGRVAEEDLLRVAAATGGTVQTSVNNVVDEVLGTCEHFEER 354
+ I DLA Y A I RV + D+ ++A ATG + T+V ++ E LG E EER
Sbjct: 294 QKGIDDLAQHYLAKYGIMAVRRVKKSDMEKLAKATGAKIVTNVKDLTPEDLGYAEVVEER 353
Query: 355 QVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGA 414
++ E GC + + TI++RGG + I+E ER+L DA+ +V+ ++ V+ GGA
Sbjct: 354 KLAGENMIFVEGCKNPKAVTILIRGGTEHVIDEVERALEDAVKVVKDVMEDGAVLPAGGA 413
Query: 415 IDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALP 474
++E++ L + ++ + GK I ++A AL++IP+ L +NAG D ++L K+ +H
Sbjct: 414 PEIELAIRLDEYAKQVGGKEALAIENFADALKIIPKTLAENAGLDTVEMLVKVISEH--- 470
Query: 475 TGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETV 526
G G+D+ G AD + EP VK AI +A+EAA +IL +D+ +
Sbjct: 471 KNRGLGIGIDVFEGKPADMLEKGIIEPLRVKKQAIKSASEAAIMILRIDDVI 522
>pdb|3RUS|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUS|B Chain B, Crystal Structure Of Cpn-Rls In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUS|C Chain C, Crystal Structure Of Cpn-Rls In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUS|D Chain D, Crystal Structure Of Cpn-Rls In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUV|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Atp Analogue
From Methanococcus Maripaludis
pdb|3RUV|B Chain B, Crystal Structure Of Cpn-Rls In Complex With Atp Analogue
From Methanococcus Maripaludis
pdb|3RUV|C Chain C, Crystal Structure Of Cpn-Rls In Complex With Atp Analogue
From Methanococcus Maripaludis
pdb|3RUV|D Chain D, Crystal Structure Of Cpn-Rls In Complex With Atp Analogue
From Methanococcus Maripaludis
pdb|3RUW|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Adp-Alfx From
Methanococcus Maripaludis
pdb|3RUW|B Chain B, Crystal Structure Of Cpn-Rls In Complex With Adp-Alfx From
Methanococcus Maripaludis
pdb|3RUW|C Chain C, Crystal Structure Of Cpn-Rls In Complex With Adp-Alfx From
Methanococcus Maripaludis
pdb|3RUW|D Chain D, Crystal Structure Of Cpn-Rls In Complex With Adp-Alfx From
Methanococcus Maripaludis
Length = 543
Score = 311 bits (797), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 182/530 (34%), Positives = 298/530 (56%), Gaps = 12/530 (2%)
Query: 5 MQPQIILLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISND 64
M Q +L E G+ NI A +A+ VRSTLGP+GMDK++ DD G V ++ND
Sbjct: 1 MSQQPGVLPENMKRYMGRDAQRMNILAGRIIAETVRSTLGPKGMDKMLVDDLGDVVVTND 60
Query: 65 GATIMKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNL 124
G TI++ + + HPAAK+L+++AK+Q+ EVGDGTTT V++A E LR+A+ ++ VHP +
Sbjct: 61 GVTILREMSVEHPAAKMLIEVAKTQEKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIV 120
Query: 125 IRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKEFFASMVVD 184
++ ++ A+ QK +EL K+I + + K +L+K A T+++ K KE A ++V+
Sbjct: 121 VKGYQAAA----QKAQELLKTIACEVGAQDKEILTKIAMTSITGKGAEKAKEKLAEIIVE 176
Query: 185 AVGAIGDGD---RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFXXXXXX 241
AV A+ D + ++I I+K G ++ D+ L+ GV K A Q PKK
Sbjct: 177 AVSAVVDDEGKVDKDLIKIEKKSGASIDDTELIKGVLVDKERVSA---QMPKKVTDAKIA 233
Query: 242 XXXXXXXXXXXXXXAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDL 301
AEIR++DP++ ++ E ++ D + + SGA V+ + I DL
Sbjct: 234 LLNCAIEIKETETDAEIRITDPAKLMEFIEQEEKMLKDMVAEIKASGANVLFCQKGIDDL 293
Query: 302 ATQYFADRDIFCAGRVAEEDLLRVAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERF 361
A Y A I A RV + D+ ++A ATG V ++ + + LG EER++ +
Sbjct: 294 AQHYLAKEGIVAARRVKKSDMEKLAKATGANVIAAIAALSAQDLGDAGLVEERKISGDSM 353
Query: 362 NIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISK 421
C + T+++RG + IEE R++ DA+ +V ++ +V+GGG+ ++E+S
Sbjct: 354 IFVEECKHPKAVTMLIRGTTEHVIEEVARAVDDAVGVVGCTIEDGRIVSGGGSTEVELSM 413
Query: 422 YLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPY 481
LR+ + I+G+ Q + ++A ALEVIPR L +NAG DA ++L K+R HA + A
Sbjct: 414 KLREYAEGISGREQLAVRAFADALEVIPRTLAENAGLDAIEILVKVRAAHASNGNKCA-- 471
Query: 482 GVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPKV 531
G+++ TG + D N V EP VK AI +A E+ ++L +D+ + K+
Sbjct: 472 GLNVFTGAVEDMCENGVVEPLRVKTQAIQSAAESTEMLLRIDDVIAAEKL 521
>pdb|1Q3S|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|E Chain E, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|F Chain F, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|G Chain G, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|H Chain H, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
Length = 548
Score = 311 bits (796), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 180/532 (33%), Positives = 291/532 (54%), Gaps = 16/532 (3%)
Query: 1 MAAMMQPQIILLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVT 60
MA + +++L EGT G+ NI A +A+ VR+TLGP+GMDK++ D G +
Sbjct: 1 MAQLSGQPVVILPEGTQRYVGRDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIV 60
Query: 61 ISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVH 120
++ND ATI+ +D+ HPAAK++V++AK+QD E GDGTTT V++A E LR+A+ ++ +H
Sbjct: 61 VTNDCATILDKIDLQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNIH 120
Query: 121 PQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKEFFAS 180
P +I+ + A+ KA + + E+A ++ E L K AAT+++ K KE A
Sbjct: 121 PSIIIKGYALAAEKAQEILDEIAIRVDPDDEE----TLLKIAATSITGKNAESHKELLAK 176
Query: 181 MVVDAVGAIG---DGDR---LNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKK 234
+ V+AV + DG L+ I +K G + +S LV GV K + + PK+
Sbjct: 177 LAVEAVKQVAEKKDGKYVVDLDNIKFEKKAGEGVEESELVRGVVIDKEVVHP---RMPKR 233
Query: 235 FXXXXXXXXXXXXXXXXXXXXAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLS 294
A+I ++ P Q S ++ E ++ D +D Q+GA VV
Sbjct: 234 VENAKIALINEALEVKKTETDAKINITSPDQLMSFLEQEEKMLKDMVDHIAQTGANVVFV 293
Query: 295 RLAIGDLATQYFADRDIFCAGRVAEEDLLRVAAATGGTVQTSVNNVVDEVLGTCEHFEER 354
+ I DLA Y A I RV + D+ ++A ATG + T+V ++ E LG E EER
Sbjct: 294 QKGIDDLAQHYLAKYGIMAVRRVKKSDMEKLAKATGAKIVTNVKDLTPEDLGYAEVVEER 353
Query: 355 QVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGA 414
++ E GC + + TI++RGG + I+E ER+L DA+ +V+ ++ V+ GGA
Sbjct: 354 KLAGENMIFVEGCKNPKAVTILIRGGTEHVIDEVERALEDAVKVVKDVMEDGAVLPAGGA 413
Query: 415 IDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALP 474
++E++ L + ++ + GK I ++A AL++IP+ L +NAG D ++L K+ +H
Sbjct: 414 PEIELAIRLDEYAKQVGGKEALAIENFADALKIIPKTLAENAGLDTVEMLVKVISEH--- 470
Query: 475 TGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETV 526
G G+D+ G AD + EP VK AI +A+EAA +IL +D+ +
Sbjct: 471 KNRGLGIGIDVFEGKPADMLEKGIIEPLRVKKQAIKSASEAAIMILRIDDVI 522
>pdb|3IZI|A Chain A, Mm-Cpn Rls With Atp
pdb|3IZI|B Chain B, Mm-Cpn Rls With Atp
pdb|3IZI|C Chain C, Mm-Cpn Rls With Atp
pdb|3IZI|D Chain D, Mm-Cpn Rls With Atp
pdb|3IZI|E Chain E, Mm-Cpn Rls With Atp
pdb|3IZI|F Chain F, Mm-Cpn Rls With Atp
pdb|3IZI|G Chain G, Mm-Cpn Rls With Atp
pdb|3IZI|H Chain H, Mm-Cpn Rls With Atp
pdb|3IZI|I Chain I, Mm-Cpn Rls With Atp
pdb|3IZI|J Chain J, Mm-Cpn Rls With Atp
pdb|3IZI|K Chain K, Mm-Cpn Rls With Atp
pdb|3IZI|L Chain L, Mm-Cpn Rls With Atp
pdb|3IZI|M Chain M, Mm-Cpn Rls With Atp
pdb|3IZI|N Chain N, Mm-Cpn Rls With Atp
pdb|3IZI|O Chain O, Mm-Cpn Rls With Atp
pdb|3IZI|P Chain P, Mm-Cpn Rls With Atp
pdb|3IZJ|A Chain A, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|B Chain B, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|C Chain C, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|D Chain D, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|E Chain E, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|F Chain F, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|G Chain G, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|H Chain H, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|I Chain I, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|J Chain J, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|K Chain K, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|L Chain L, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|M Chain M, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|N Chain N, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|O Chain O, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|P Chain P, Mm-Cpn Rls With Atp And Alfx
Length = 513
Score = 310 bits (794), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 176/502 (35%), Positives = 289/502 (57%), Gaps = 12/502 (2%)
Query: 28 NINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAK 87
NI A +A+ VRSTLGP+GMDK++ DD G V ++NDG TI++ + + HPAAK+L+++AK
Sbjct: 18 NILAGRIIAETVRSTLGPKGMDKMLVDDLGDVVVTNDGVTILREMSVEHPAAKMLIEVAK 77
Query: 88 SQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIE 147
+Q+ EVGDGTTT V++A E LR+A+ ++ VHP +++ ++ A+ QK +EL K+I
Sbjct: 78 TQEKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQAAA----QKAQELLKTIA 133
Query: 148 GQSLEEKKRLLSKCAATTLSSKLIGGEKEFFASMVVDAVGAIGDGD---RLNMIGIKKVP 204
+ + K +L+K A T+++ K KE A ++V+AV A+ D + ++I I+K
Sbjct: 134 CEVGAQDKEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSAVVDDEGKVDKDLIKIEKKS 193
Query: 205 GGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFXXXXXXXXXXXXXXXXXXXXAEIRLSDPS 264
G ++ D+ L+ GV K A Q PKK AEIR++DP+
Sbjct: 194 GASIDDTELIKGVLVDKERVSA---QMPKKVTDAKIALLNCAIEIKETETDAEIRITDPA 250
Query: 265 QYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLR 324
+ ++ E ++ D + + SGA V+ + I DLA Y A I A RV + D+ +
Sbjct: 251 KLMEFIEQEEKMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGIVAARRVKKSDMEK 310
Query: 325 VAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQF 384
+A ATG V ++ + + LG EER++ + C + T+++RG +
Sbjct: 311 LAKATGANVIAAIAALSAQDLGDAGLVEERKISGDSMIFVEECKHPKAVTMLIRGTTEHV 370
Query: 385 IEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKA 444
IEE R++ DA+ +V ++ +V+GGG+ ++E+S LR+ + I+G+ Q + ++A A
Sbjct: 371 IEEVARAVDDAVGVVGCTIEDGRIVSGGGSTEVELSMKLREYAEGISGREQLAVRAFADA 430
Query: 445 LEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVV 504
LEVIPR L +NAG DA ++L K+R HA + A G+++ TG + D N V EP V
Sbjct: 431 LEVIPRTLAENAGLDAIEILVKVRAAHASNGNKCA--GLNVFTGAVEDMCENGVVEPLRV 488
Query: 505 KINAINAATEAACLILSVDETV 526
K AI +A E+ ++L +D+ +
Sbjct: 489 KTQAIQSAAESTEMLLRIDDVI 510
>pdb|1Q2V|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q2V|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q2V|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q2V|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q3Q|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
pdb|1Q3Q|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
pdb|1Q3Q|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
pdb|1Q3Q|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
Length = 548
Score = 308 bits (790), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 179/532 (33%), Positives = 290/532 (54%), Gaps = 16/532 (3%)
Query: 1 MAAMMQPQIILLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVT 60
MA + +++L EGT G+ NI A +A+ VR+TLGP+GMDK++ D G +
Sbjct: 1 MAQLSGQPVVILPEGTQRYVGRDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIV 60
Query: 61 ISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVH 120
++ND ATI+ +D+ HPAAK++V++AK+QD E GDGTTT V++A E LR+A+ ++ +H
Sbjct: 61 VTNDCATILDKIDLQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNIH 120
Query: 121 PQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKEFFAS 180
P + + + A+ KA + + E+A ++ E L K AAT+++ K KE A
Sbjct: 121 PSIITKGYALAAEKAQEILDEIAIRVDPDDEE----TLLKIAATSITGKNAESHKELLAK 176
Query: 181 MVVDAVGAIG---DGDR---LNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKK 234
+ V+AV + DG L+ I +K G + +S LV GV K + + PK+
Sbjct: 177 LAVEAVKQVAEKKDGKYVVDLDNIKFEKKAGEGVEESELVRGVVIDKEVVHP---RMPKR 233
Query: 235 FXXXXXXXXXXXXXXXXXXXXAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLS 294
A+I ++ P Q S ++ E ++ D +D Q+GA VV
Sbjct: 234 VENAKIALINEALEVKKTETDAKINITSPDQLMSFLEQEEKMLKDMVDHIAQTGANVVFV 293
Query: 295 RLAIGDLATQYFADRDIFCAGRVAEEDLLRVAAATGGTVQTSVNNVVDEVLGTCEHFEER 354
+ I DLA Y A I RV + D+ ++A ATG + T+V ++ E LG E EER
Sbjct: 294 QKGIDDLAQHYLAKYGIMAVRRVKKSDMEKLAKATGAKIVTNVKDLTPEDLGYAEVVEER 353
Query: 355 QVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGA 414
++ E GC + + TI++RGG + I+E ER+L DA+ +V+ ++ V+ GGA
Sbjct: 354 KLAGENMIFVEGCKNPKAVTILIRGGTEHVIDEVERALEDAVKVVKDVMEDGAVLPAGGA 413
Query: 415 IDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALP 474
++E++ L + ++ + GK I ++A AL++IP+ L +NAG D ++L K+ +H
Sbjct: 414 PEIELAIRLDEYAKQVGGKEALAIENFADALKIIPKTLAENAGLDTVEMLVKVISEH--- 470
Query: 475 TGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETV 526
G G+D+ G AD + EP VK AI +A+EAA +IL +D+ +
Sbjct: 471 KNRGLGIGIDVFEGKPADMLEKGIIEPLRVKKQAIKSASEAAIMILRIDDVI 522
>pdb|1A6D|B Chain B, Thermosome From T. Acidophilum
pdb|1A6E|B Chain B, Thermosome-Mg-Adp-Alf3 Complex
Length = 543
Score = 305 bits (780), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 188/527 (35%), Positives = 294/527 (55%), Gaps = 17/527 (3%)
Query: 6 QPQIILLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDG 65
QP I +LKEGT GK + NI A A+++ VRS+LGPRGMDK++ D G + I+NDG
Sbjct: 5 QP-IFILKEGTKRESGKDAMKENIEAAIAISNSVRSSLGPRGMDKMLVDSLGDIVITNDG 63
Query: 66 ATIMKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLI 125
TI+K +D+ HPAAK++V+++K+QDS VGDGTTT V++A L++A+ I VHP +
Sbjct: 64 VTILKEMDVEHPAAKMMVEVSKTQDSFVGDGTTTAVIIAGGLLQQAQGLINQNVHPTVIS 123
Query: 126 RSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKEFFASMVVDA 185
+R AS +A + + E++ I ++K LL K A T+L+SK K+ A + +A
Sbjct: 124 EGYRMASEEAKRVIDEISTKIGA----DEKALLLKMAQTSLNSKSASVAKDKLAEISYEA 179
Query: 186 VGAIG---DGDR---LNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFXXXX 239
V ++ DG + I + K GG + D+ L+NG+ K + G P
Sbjct: 180 VKSVAELRDGKYYVDFDNIQVVKKQGGAIDDTQLINGIIVDKEKVHPGM---PDVVKDAK 236
Query: 240 XXXXXXXXXXXXXXXXAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIG 299
+R+ DPS Q + E N++ + +DK GA VV+++ I
Sbjct: 237 IALLDAPLEIKKPEFDTNLRIEDPSMIQKFLAQEENMLREMVDKIKSVGANVVITQKGID 296
Query: 300 DLATQYFADRDIFCAGRVAEEDLLRVAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGNE 359
D+A Y + I+ RV + D+ ++A ATG ++ ++++ + LGT E E+ +VG +
Sbjct: 297 DMAQHYLSRAGIYAVRRVKKSDMDKLAKATGASIVSTIDEISSSDLGTAERVEQVKVGED 356
Query: 360 RFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEI 419
+GC + + +I++RG + ++E ERS+ D++ +V A ++ AGGGA EI
Sbjct: 357 YMTFVTGCKNPKAVSILVRGETEHVVDEMERSITDSLHVVASALEDGAYAAGGGATAAEI 416
Query: 420 SKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGA 479
+ LR ++ I G+ Q I +A A+E IPR L +NAG D D+L KLR +HA
Sbjct: 417 AFRLRSYAQKIGGRQQLAIEKFADAIEEIPRALAENAGLDPIDILLKLRAEHAKGN---K 473
Query: 480 PYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETV 526
YG+++ TG I D N V EP V AI +ATEAA +IL +D+ +
Sbjct: 474 TYGINVFTGEIEDMVKNGVIEPIRVGKQAIESATEAAIMILRIDDVI 520
>pdb|3IYG|A Chain A, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 529
Score = 305 bits (780), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 181/529 (34%), Positives = 298/529 (56%), Gaps = 24/529 (4%)
Query: 17 DTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVH 76
D S G+A N+ A ++A++V+S+LGP G+DK++ DD G VTI+NDGATI+KLL++ H
Sbjct: 4 DRSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEH 63
Query: 77 PAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAI 136
PAAK+L ++A QD EVGDGTT+VV++AAE L+ A ++ +HP ++I +R A +A+
Sbjct: 64 PAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAV 123
Query: 137 QKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKEFFASMVVDAVGAIGDGD--- 193
+ + E ++ + E + L A T++SSK+IG +FFA++VVDAV AI D
Sbjct: 124 RYISE---NLIINTDELGRDCLINAAKTSMSSKVIGINGDFFANLVVDAVLAIKYTDIRG 180
Query: 194 ----RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFXXXXXXXXXXXXXX 249
+N I + K G + +S L+NG A G + PK+
Sbjct: 181 QPRYPVNSINVLKAHGRSQMESMLINGYALN---CVVGSQGMPKRIVNAKIACLDFSLQK 237
Query: 250 XXXXXXAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADR 309
++ ++DP + I E +I +++ K + +GA V+L+ I D+ +YF +
Sbjct: 238 TKMKLGVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYFVEA 297
Query: 310 DIFCAGRVAEEDLLRVAAATGGTVQTSVNNVVDE------VLGTCEHFEERQVGNERFNI 363
RV + DL R+A A+G TV +++ N+ E +LG E + ++ ++ +
Sbjct: 298 GAMAVRRVLKRDLKRIAKASGATVLSTLANLEGEETFEASMLGQAEEVVQERICDDELIL 357
Query: 364 FSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYL 423
+ +A+++LRG D +E ERSLHDA+ +V+R ++ +VV GGGA++ +S YL
Sbjct: 358 IKNTKARTSASVILRGANDFMCDEMERSLHDALCVVKRVLESKSVVPGGGAVEAALSIYL 417
Query: 424 RQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKH----ALPTGEGA 479
+ ++ + Q I +A++L VIP L NA D+TD++ KLR H P +
Sbjct: 418 ENYATSMGSREQLAIAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPERKNL 477
Query: 480 PY-GVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVK 527
+ G+D+ G D+ V+EP +VK+ ++ ATEAA IL +D+ +K
Sbjct: 478 KWIGLDLVNGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLIK 526
>pdb|3P9D|A Chain A, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|I Chain I, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|AA Chain a, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|II Chain i, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|A Chain A, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|I Chain I, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|AA Chain a, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|II Chain i, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 559
Score = 294 bits (753), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 176/525 (33%), Positives = 288/525 (54%), Gaps = 34/525 (6%)
Query: 28 NINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAK 87
N+ A AVA+VV+S+LGP G+DK++ DD G T++NDGATI+ LLD+ HPA KILV++A+
Sbjct: 29 NVLATMAVANVVKSSLGPVGLDKMLVDDIGDFTVTNDGATILSLLDVQHPAGKILVELAQ 88
Query: 88 SQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKE-LAKSI 146
QD E+GDGTT+VV++A+E L+ A +++ +HP +I FR A +AI+ + E L+ S+
Sbjct: 89 QQDREIGDGTTSVVIIASELLKRANELVKNKIHPTTIITGFRVALREAIRFINEVLSTSV 148
Query: 147 EGQSLEEKKRLLSKCAATTLSSKLIGGEKEFFASMVVDAVGAIGDGDR-------LNMIG 199
+ K L A T++SSK+IG + +FF++MVVDA+ A+ + + +
Sbjct: 149 DTLG----KETLINIAKTSMSSKIIGADSDFFSNMVVDALLAVKTQNSKGEIKYPVKAVN 204
Query: 200 IKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFX--XXXXXXXXXXXXXXXXXXXAE 257
+ K G + +S LV G A T + + PK+ +
Sbjct: 205 VLKAHGKSATESLLVPGYALNCTVAS---QAMPKRIAGGNVKIACLDLNLQKARMAMGVQ 261
Query: 258 IRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRV 317
I + DP Q + I E I+ +++ K + +GA+VVL+ I DL + F + I R
Sbjct: 262 INIDDPEQLEQIRKREAGIVLERVKKIIDAGAQVVLTTKGIDDLCLKEFVEAKIMGVRRC 321
Query: 318 AEEDLLRVAAATGGTVQTSVNNVVDE------VLGTCEHFEERQVGNERFNIFSGCPSGR 371
+EDL R+A ATG T+ +S++N+ E LG C+ + + ++ + G
Sbjct: 322 KKEDLRRIARATGATLVSSMSNLEGEETFESSYLGLCDEVVQAKFSDDECILIKGTSKHS 381
Query: 372 TATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESRAIA 431
+++I+LRG D ++E ERSLHD++ +V+R ++ VV GGG ++ ++ YL + +
Sbjct: 382 SSSIILRGANDYSLDEMERSLHDSLSVVKRTLESGNVVPGGGCVEAALNIYLDNFATTVG 441
Query: 432 GKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAP----------Y 481
+ Q I +A AL +IP+ L NA D+++++ KLR HA + P Y
Sbjct: 442 SREQLAIAEFAAALLIIPKTLAVNAAKDSSELVAKLRSYHA-ASQMAKPEDVKRRSYRNY 500
Query: 482 GVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETV 526
G+D+ G I D V EP + K+ ++ +A EA IL +D +
Sbjct: 501 GLDLIRGKIVDEIHAGVLEPTISKVKSLKSALEACVAILRIDTMI 545
>pdb|3IYF|A Chain A, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|B Chain B, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|C Chain C, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|D Chain D, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|E Chain E, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|F Chain F, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|G Chain G, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|H Chain H, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|I Chain I, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|J Chain J, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|K Chain K, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|L Chain L, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|M Chain M, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|N Chain N, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|O Chain O, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|P Chain P, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3KFE|A Chain A, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|B Chain B, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|C Chain C, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|D Chain D, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|E Chain E, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|F Chain F, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|G Chain G, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|H Chain H, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFK|A Chain A, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFK|B Chain B, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFK|C Chain C, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFK|D Chain D, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
Length = 521
Score = 291 bits (744), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 180/530 (33%), Positives = 295/530 (55%), Gaps = 34/530 (6%)
Query: 5 MQPQIILLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISND 64
M Q +L E G+ NI A +A+ VRSTLGP+GMDK++ DD G V ++ND
Sbjct: 1 MSQQPGVLPENMKRYMGRDAQRMNILAGRIIAETVRSTLGPKGMDKMLVDDLGDVVVTND 60
Query: 65 GATIMKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNL 124
G TI++ + + HPAAK+L+++AK+Q+ EVGDGTTT V++A E LR+A+ ++ VHP +
Sbjct: 61 GVTILREMSVEHPAAKMLIEVAKTQEKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIV 120
Query: 125 IRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKEFFASMVVD 184
++ ++ A+ QK +EL K+I + + K +L+K A T+++ K KE A ++V+
Sbjct: 121 VKGYQAAA----QKAQELLKTIACEVGAQDKEILTKIAMTSITGKGAEKAKEKLAEIIVE 176
Query: 185 AVGAIGDGD---RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFXXXXXX 241
AV A+ D + ++I I+K G ++ D+ L+ GV K A Q PKK
Sbjct: 177 AVSAVVDDEGKVDKDLIKIEKKSGASIDDTELIKGVLVDKERVSA---QMPKKV------ 227
Query: 242 XXXXXXXXXXXXXXAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDL 301
A+I L + +I + ++ D + + SGA V+ + I DL
Sbjct: 228 ------------TDAKIALLNC----AIEETASEMLKDMVAEIKASGANVLFCQKGIDDL 271
Query: 302 ATQYFADRDIFCAGRVAEEDLLRVAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERF 361
A Y A I A RV + D+ ++A ATG V T++ ++ + LG EER++ +
Sbjct: 272 AQHYLAKEGIVAARRVKKSDMEKLAKATGANVITNIKDLSAQDLGDAGLVEERKISGDSM 331
Query: 362 NIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISK 421
C + T+++RG + IEE R++ DA+ +V ++ +V+GGG+ ++E+S
Sbjct: 332 IFVEECKHPKAVTMLIRGTTEHVIEEVARAVDDAVGVVGCTIEDGRIVSGGGSTEVELSM 391
Query: 422 YLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPY 481
LR+ + I+G+ Q + ++A ALEVIPR L +NAG DA ++L K+R HA + A
Sbjct: 392 KLREYAEGISGREQLAVRAFADALEVIPRTLAENAGLDAIEILVKVRAAHASNGNKCA-- 449
Query: 482 GVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPKV 531
G+++ TG + D N V EP VK AI +A E+ ++L +D+ + K+
Sbjct: 450 GLNVFTGAVEDMCENGVVEPLRVKTQAIQSAAESTEMLLRIDDVIAAEKL 499
>pdb|3IZN|A Chain A, Mm-Cpn Deltalid With Atp
pdb|3IZN|B Chain B, Mm-Cpn Deltalid With Atp
pdb|3IZN|C Chain C, Mm-Cpn Deltalid With Atp
pdb|3IZN|D Chain D, Mm-Cpn Deltalid With Atp
pdb|3IZN|E Chain E, Mm-Cpn Deltalid With Atp
pdb|3IZN|F Chain F, Mm-Cpn Deltalid With Atp
pdb|3IZN|G Chain G, Mm-Cpn Deltalid With Atp
pdb|3IZN|H Chain H, Mm-Cpn Deltalid With Atp
pdb|3IZN|I Chain I, Mm-Cpn Deltalid With Atp
pdb|3IZN|J Chain J, Mm-Cpn Deltalid With Atp
pdb|3IZN|K Chain K, Mm-Cpn Deltalid With Atp
pdb|3IZN|L Chain L, Mm-Cpn Deltalid With Atp
pdb|3IZN|M Chain M, Mm-Cpn Deltalid With Atp
pdb|3IZN|N Chain N, Mm-Cpn Deltalid With Atp
pdb|3IZN|O Chain O, Mm-Cpn Deltalid With Atp
pdb|3IZN|P Chain P, Mm-Cpn Deltalid With Atp
pdb|3J03|A Chain A, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|B Chain B, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|C Chain C, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|D Chain D, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|E Chain E, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|F Chain F, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|G Chain G, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|H Chain H, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|I Chain I, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|J Chain J, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|K Chain K, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|L Chain L, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|M Chain M, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|N Chain N, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|O Chain O, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|P Chain P, Lidless Mm-Cpn In The Closed State With AtpALFX
Length = 491
Score = 289 bits (740), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 174/502 (34%), Positives = 286/502 (56%), Gaps = 34/502 (6%)
Query: 28 NINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAK 87
NI A +A+ VRSTLGP+GMDK++ DD G V ++NDG TI++ + + HPAAK+L+++AK
Sbjct: 18 NILAGRIIAETVRSTLGPKGMDKMLVDDLGDVVVTNDGVTILREMSVEHPAAKMLIEVAK 77
Query: 88 SQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIE 147
+Q+ EVGDGTTT V++A E LR+A+ ++ VHP +++ ++ A+ QK +EL K+I
Sbjct: 78 TQEKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQAAA----QKAQELLKTIA 133
Query: 148 GQSLEEKKRLLSKCAATTLSSKLIGGEKEFFASMVVDAVGAIGDGD---RLNMIGIKKVP 204
+ + K +L+K A T+++ K KE A ++V+AV A+ D + ++I I+K
Sbjct: 134 CEVGAQDKEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSAVVDDEGKVDKDLIKIEKKS 193
Query: 205 GGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFXXXXXXXXXXXXXXXXXXXXAEIRLSDPS 264
G ++ D+ L+ GV K A Q PKK A+I L +
Sbjct: 194 GASIDDTELIKGVLVDKERVSA---QMPKKV------------------TDAKIALLNC- 231
Query: 265 QYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLR 324
+I + ++ D + + SGA V+ + I DLA Y A I A RV + D+ +
Sbjct: 232 ---AIEETASEMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGIVAARRVKKSDMEK 288
Query: 325 VAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQF 384
+A ATG V T++ ++ + LG EER++ + C + T+++RG +
Sbjct: 289 LAKATGANVITNIKDLSAQDLGDAGLVEERKISGDSMIFVEECKHPKAVTMLIRGTTEHV 348
Query: 385 IEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKA 444
IEE R++ DA+ +V ++ +V+GGG+ ++E+S LR+ + I+G+ Q + ++A A
Sbjct: 349 IEEVARAVDDAVGVVGCTIEDGRIVSGGGSTEVELSMKLREYAEGISGREQLAVRAFADA 408
Query: 445 LEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVV 504
LEVIPR L +NAG DA ++L K+R HA + A G+++ TG + D N V EP V
Sbjct: 409 LEVIPRTLAENAGLDAIEILVKVRAAHASNGNKCA--GLNVFTGAVEDMCENGVVEPLRV 466
Query: 505 KINAINAATEAACLILSVDETV 526
K AI +A E+ ++L +D+ +
Sbjct: 467 KTQAIQSAAESTEMLLRIDDVI 488
>pdb|3J02|A Chain A, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|B Chain B, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|C Chain C, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|D Chain D, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|E Chain E, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|F Chain F, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|G Chain G, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|H Chain H, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|I Chain I, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|J Chain J, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|K Chain K, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|L Chain L, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|M Chain M, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|N Chain N, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|O Chain O, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|P Chain P, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
Length = 491
Score = 286 bits (731), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 173/502 (34%), Positives = 285/502 (56%), Gaps = 34/502 (6%)
Query: 28 NINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAK 87
NI A +A+ VRSTLGP+GMDK++ DD G V ++NDG TI++ + + HPAAK+L+++AK
Sbjct: 18 NILAGRIIAETVRSTLGPKGMDKMLVDDLGDVVVTNDGVTILREMSVEHPAAKMLIEVAK 77
Query: 88 SQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIE 147
+Q+ EVGDGTTT V++A E LR+A+ ++ VHP +++ ++ A+ QK +EL K+I
Sbjct: 78 TQEKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQAAA----QKAQELLKTIA 133
Query: 148 GQSLEEKKRLLSKCAATTLSSKLIGGEKEFFASMVVDAVGAIGDGD---RLNMIGIKKVP 204
+ + K +L+K A T+++ K KE A ++V+AV A+ D + ++I I+K
Sbjct: 134 CEVGAQDKEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSAVVDDEGKVDKDLIKIEKKS 193
Query: 205 GGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFXXXXXXXXXXXXXXXXXXXXAEIRLSDPS 264
G ++ D+ L+ GV K A Q PKK A+I L +
Sbjct: 194 GASIDDTELIKGVLVDKERVSA---QMPKKV------------------TDAKIALLNC- 231
Query: 265 QYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLR 324
+I + ++ D + + SGA V+ + I DLA Y A I A RV + D+ +
Sbjct: 232 ---AIEETASEMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGIVAARRVKKSDMEK 288
Query: 325 VAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQF 384
+A ATG V T++ ++ + LG EER++ + C + T+++RG +
Sbjct: 289 LAKATGANVITNIKDLSAQDLGDAGLVEERKISGDSMIFVEECKHPKAVTMLIRGTTEHV 348
Query: 385 IEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKA 444
IEE R++ A+ +V ++ +V+GGG+ ++E+S LR+ + I+G+ Q + ++A A
Sbjct: 349 IEEVARAVDAAVGVVGCTIEDGRIVSGGGSTEVELSMKLREYAEGISGREQLAVRAFADA 408
Query: 445 LEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVV 504
LEVIPR L +NAG DA ++L K+R HA + A G+++ TG + D N V EP V
Sbjct: 409 LEVIPRTLAENAGLDAIEILVKVRAAHASNGNKCA--GLNVFTGAVEDMCENGVVEPLRV 466
Query: 505 KINAINAATEAACLILSVDETV 526
K AI +A E+ ++L +D+ +
Sbjct: 467 KTQAIQSAAESTEMLLRIDDVI 488
>pdb|3IZK|A Chain A, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|B Chain B, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|C Chain C, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|D Chain D, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|E Chain E, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|F Chain F, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|G Chain G, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|H Chain H, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|I Chain I, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|J Chain J, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|K Chain K, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|L Chain L, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|M Chain M, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|N Chain N, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|O Chain O, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|P Chain P, Mm-Cpn Rls Deltalid With Atp
pdb|3IZL|A Chain A, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|B Chain B, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|C Chain C, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|D Chain D, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|E Chain E, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|F Chain F, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|G Chain G, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|H Chain H, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|I Chain I, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|J Chain J, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|K Chain K, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|L Chain L, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|M Chain M, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|N Chain N, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|O Chain O, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|P Chain P, Mm-Cpn Rls Deltalid With Atp And Alfx
Length = 491
Score = 285 bits (730), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 173/502 (34%), Positives = 284/502 (56%), Gaps = 34/502 (6%)
Query: 28 NINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAK 87
NI A +A+ VRSTLGP+GMDK++ DD G V ++NDG TI++ + + HPAAK+L+++AK
Sbjct: 18 NILAGRIIAETVRSTLGPKGMDKMLVDDLGDVVVTNDGVTILREMSVEHPAAKMLIEVAK 77
Query: 88 SQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIE 147
+Q+ EVGDGTTT V++A E LR+A+ ++ VHP +++ ++ A+ QK +EL K+I
Sbjct: 78 TQEKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQAAA----QKAQELLKTIA 133
Query: 148 GQSLEEKKRLLSKCAATTLSSKLIGGEKEFFASMVVDAVGAIGDGD---RLNMIGIKKVP 204
+ + K +L+K A T+++ K KE A ++V+AV A+ D + ++I I+K
Sbjct: 134 CEVGAQDKEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSAVVDDEGKVDKDLIKIEKKS 193
Query: 205 GGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFXXXXXXXXXXXXXXXXXXXXAEIRLSDPS 264
G ++ D+ L+ GV K A Q PKK A+I L +
Sbjct: 194 GASIDDTELIKGVLVDKERVSA---QMPKKV------------------TDAKIALLNC- 231
Query: 265 QYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLR 324
+I + ++ D + + SGA V+ + I DLA Y A I A RV + D+ +
Sbjct: 232 ---AIEETASEMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGIVAARRVKKSDMEK 288
Query: 325 VAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQF 384
+A ATG V ++ + + LG EER++ + C + T+++RG +
Sbjct: 289 LAKATGANVIAAIAALSAQDLGDAGLVEERKISGDSMIFVEECKHPKAVTMLIRGTTEHV 348
Query: 385 IEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKA 444
IEE R++ DA+ +V ++ +V+GGG+ ++E+S LR+ + I+G+ Q + ++A A
Sbjct: 349 IEEVARAVDDAVGVVGCTIEDGRIVSGGGSTEVELSMKLREYAEGISGREQLAVRAFADA 408
Query: 445 LEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVV 504
LEVIPR L +NAG DA ++L K+R HA + A G+++ TG + D N V EP V
Sbjct: 409 LEVIPRTLAENAGLDAIEILVKVRAAHASNGNKCA--GLNVFTGAVEDMCENGVVEPLRV 466
Query: 505 KINAINAATEAACLILSVDETV 526
K AI +A E+ ++L +D+ +
Sbjct: 467 KTQAIQSAAESTEMLLRIDDVI 488
>pdb|3IYG|D Chain D, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 518
Score = 281 bits (720), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 175/512 (34%), Positives = 282/512 (55%), Gaps = 23/512 (4%)
Query: 27 SNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIA 86
SNI+A AVAD +R++LGP+GMDK+I D KG VTI+NDGATI+K + ++HPAA++LV+++
Sbjct: 15 SNISAAKAVADAIRTSLGPKGMDKMIQDGKGDVTITNDGATILKQMQVLHPAARMLVELS 74
Query: 87 KSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSI 146
K+QD E GDGTT+VV++A L ++ G+HP + SF+ A K I+ + ++++ +
Sbjct: 75 KAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGIEILTDMSRPV 134
Query: 147 EGQSLEEKKRLLSKCAATTLSSKLIGGEKEFFASMVVDAVGAIGDGDR-----LNMIGIK 201
E L +++ LL+ AAT+L+SK++ + M VDAV + D L I I
Sbjct: 135 E---LSDRETLLNS-AATSLNSKVVSQYSSLLSPMSVDAVMKVIDPATATSVDLRDIKIV 190
Query: 202 KVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFXXXXXXXXXXXXXXXXXXXXAEIRLS 261
K GGT+ D LV G+ + + +G + K +I +S
Sbjct: 191 KKLGGTIDDCELVEGLVLTQKVANSGITRVEK----AKIGLIQFCLSAPKTDMDNQIVVS 246
Query: 262 DPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVL-----SRLAIGDLATQYFADRDIFCAGR 316
D Q ++ E I + + + ++G V+L R A+ DLA + I
Sbjct: 247 DYVQMDRVLREERAYILNLVKQIKKTGCNVLLIQKSILRDALSDLALHFLNKMKIMVVKD 306
Query: 317 VAEEDLLRVAAATGGTVQTSVNNVVDEVLGTCEHFEERQV-GNERFNIFSGCPS-GRTAT 374
+ ED+ + G V+ ++LG+ E EE + G+ + +GC S G+T T
Sbjct: 307 IEREDIEFICKTIGTKPVAHVDQFTADMLGSAELAEEVSLNGSGKLIKITGCASPGKTVT 366
Query: 375 IVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKS 434
IV+RG IEEAERS+HDA+ ++R K ++AGGGA ++E++ L + SR ++G
Sbjct: 367 IVVRGSNKLVIEEAERSIHDALCVIRCLVKKRALIAGGGAPEIELALRLTEYSRTLSGME 426
Query: 435 QFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSF 494
+ I ++A A+EVIP L +NAG + + +LR +HA GE G+++ GGI++
Sbjct: 427 SYCIRAFADAMEVIPSTLAENAGLNPISTVTELRNRHA--QGEKT-TGINVRKGGISNIL 483
Query: 495 ANFVWEPAVVKINAINAATEAACLILSVDETV 526
V +P +V ++A+ ATE IL +D+ V
Sbjct: 484 EELVVQPLLVSVSALTLATETVRSILKIDDVV 515
>pdb|3P9D|B Chain B, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|J Chain J, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|BB Chain b, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|JJ Chain j, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|B Chain B, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|J Chain J, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|BB Chain b, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|JJ Chain j, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 527
Score = 276 bits (705), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 179/508 (35%), Positives = 277/508 (54%), Gaps = 16/508 (3%)
Query: 34 AVADVVRSTLGPRGMDKLIHD-DKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSE 92
AV D+V+STLGP+GMDKL+ T ++NDGATI+K + + +PAAK+LV+I+K QD E
Sbjct: 28 AVGDLVKSTLGPKGMDKLLQSASSNTCMVTNDGATILKSIPLDNPAAKVLVNISKVQDDE 87
Query: 93 VGDGTTTVVLLAAEFLREAKPFIEDG-VHPQNLIRSFRNASYKAIQKVKELAKSIEGQSL 151
VGDGTT+V +L+AE LREA+ I+ +HPQ +I +R AS A+ + + A
Sbjct: 88 VGDGTTSVTVLSAELLREAEKLIDQSKIHPQTIIEGYRLASAAALDALTKAAVDNSHDKT 147
Query: 152 EEKKRLLSKCAATTLSSKLIGGEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTMRDS 211
++ L+ A TTLSSK++ +K+ FA + +A+ + L I I K+ GG + DS
Sbjct: 148 MFREDLI-HIAKTTLSSKILSQDKDHFAELATNAILRLKGSTNLEHIQIIKILGGKLSDS 206
Query: 212 FLVNGVAFKKTFSYAGFEQQPKKFXXXXXXXXXXXXXXXXXXX-XAEIRLSDPSQYQSIV 270
FL G K F QPK+ + ++ ++ +
Sbjct: 207 FLDEGFILAKKFG----NNQPKRIENAKILIANTTLDTDKVKIFGTKFKVDSTAKLAQLE 262
Query: 271 DAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAAATG 330
AE + +K+ K + G ++R I D Q F D I E + R+A TG
Sbjct: 263 KAEREKMKNKIAKISKFGINTFINRQLIYDYPEQLFTDLGINSIEHADFEGVERLALVTG 322
Query: 331 GTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAER 390
G V ++ + LG C+ EE +G + F FSGC +G TIVLRG DQ ++EAER
Sbjct: 323 GEVVSTFDEPSKCKLGECDVIEEIMLGEQPFLKFSGCKAGEACTIVLRGATDQTLDEAER 382
Query: 391 SLHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPR 450
SLHDA+ ++ + TK + V GGG +M +SK + E++ I GK + ++A+AL +P
Sbjct: 383 SLHDALSVLSQTTKETRTVLGGGCAEMVMSKAVDTEAQNIDGKKSLAVEAFARALRQLPT 442
Query: 451 QLCDNAGFDATDVLNKLRQK--HALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINA 508
L DNAGFD++++++KLR + + T G+D+N G IAD + E +K
Sbjct: 443 ILADNAGFDSSELVSKLRSSIYNGISTS-----GLDLNNGTIADMRQLGIVESYKLKRAV 497
Query: 509 INAATEAACLILSVDETVK-NPKVVCKQ 535
+++A+EAA ++L VD ++ P+ +Q
Sbjct: 498 VSSASEAAEVLLRVDNIIRARPRTANRQ 525
>pdb|3AQ1|B Chain B, Open State Monomer Of A Group Ii Chaperonin From
Methanococcoides Burtonii
Length = 500
Score = 269 bits (687), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 157/483 (32%), Positives = 267/483 (55%), Gaps = 17/483 (3%)
Query: 51 LIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLRE 110
++ D G + I+NDGATI+K +DI HPAAK++V+++K+QD+EVGDGTTT +L+ E L +
Sbjct: 1 MLVDSMGDIVITNDGATILKEMDIQHPAAKMIVEVSKTQDAEVGDGTTTAAVLSGELLSK 60
Query: 111 AKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKL 170
A+ I GVH + +R+A+ +K +E+ ++I + + L K A T ++ K
Sbjct: 61 AEELIMKGVHSTIISEGYRHAA----EKCREILETITIAISPDDEAALIKIAGTAITGKG 116
Query: 171 IGGEKEFFASMVVDAVGAI----GDGDRLNM---IGIKKVPGGTMRDSFLVNGVAFKKTF 223
KE +++ V AV +I DG ++N+ I I+K GG++ DS L++G+ K
Sbjct: 117 AEAYKEKLSALTVKAVRSIVEEEEDGLKVNVLENIKIEKRAGGSIDDSELIDGLVIDKER 176
Query: 224 SYAGFEQQPKKFXXXXXXXXXXXXXXXXXXXXAEIRLSDPSQYQSIVDAEWNIIYDKLDK 283
S+ P+K +EI+++ P Q Q +D E ++ + +K
Sbjct: 177 SHPNM---PEKVENAKILLLSCPVEFRKTEVDSEIKITSPGQMQLFLDQEEKMMREMAEK 233
Query: 284 CVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAAATGGTVQTSVNNVVDE 343
+ SGA VV + I D+A Y I+ RV + DL R++ TG T+ ++ + E
Sbjct: 234 VIASGANVVFCQKGIDDMAQYYIEKAGIYAVRRVKKSDLKRLSKVTGATIIQDLDQITTE 293
Query: 344 VLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRAT 403
+GT EE++V + +GC + + T++L GG + ++ + +L+DA+ +V
Sbjct: 294 DVGTAGLVEEKEVRGGKMTYVTGCQNSKAVTVLLHGGTEHVVDSLDHALNDALHVVGVVI 353
Query: 404 KNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDV 463
++ VV GGG+ ++E+S L + + + G+ Q ++ +A+ALEVIP L +NAG D D+
Sbjct: 354 EDGKVVVGGGSSEVELSLRLSEYASTLKGREQLAVSKFAEALEVIPVALAENAGLDPIDI 413
Query: 464 LNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVD 523
+ +LR +H G+++ TG + D + N V EP +K AINAA EA +IL +D
Sbjct: 414 MVELRSQHEKGNKNA---GLNVYTGEVVDMWENDVIEPLRIKTQAINAAMEATVMILRID 470
Query: 524 ETV 526
+ V
Sbjct: 471 DVV 473
>pdb|3IYG|B Chain B, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
pdb|3KTT|B Chain B, Atomic Model Of Bovine Tric Cct2(Beta) Subunit Derived
From A 4.0 Angstrom Cryo-Em Map
pdb|4A0O|A Chain A, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|B Chain B, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|C Chain C, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|D Chain D, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|E Chain E, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|F Chain F, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|G Chain G, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|H Chain H, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|I Chain I, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|J Chain J, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|K Chain K, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|L Chain L, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|M Chain M, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|N Chain N, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|O Chain O, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|P Chain P, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0V|A Chain A, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|B Chain B, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|C Chain C, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|D Chain D, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|E Chain E, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|F Chain F, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|G Chain G, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|H Chain H, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|I Chain I, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|J Chain J, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|K Chain K, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|L Chain L, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|M Chain M, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|N Chain N, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|O Chain O, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|P Chain P, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0W|A Chain A, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|B Chain B, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|C Chain C, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|D Chain D, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|E Chain E, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|F Chain F, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|G Chain G, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|H Chain H, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|I Chain I, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|J Chain J, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|K Chain K, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|L Chain L, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|M Chain M, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|N Chain N, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|O Chain O, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|P Chain P, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A13|A Chain A, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|B Chain B, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|C Chain C, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|D Chain D, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|E Chain E, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|F Chain F, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|G Chain G, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|H Chain H, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|I Chain I, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|J Chain J, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|K Chain K, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|L Chain L, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|M Chain M, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|N Chain N, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|O Chain O, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|P Chain P, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
Length = 513
Score = 258 bits (660), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 174/518 (33%), Positives = 274/518 (52%), Gaps = 15/518 (2%)
Query: 15 GTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDD--KGTVTISNDGATIMKLL 72
G D + + +S+ A+ D+V+STLGP+GMDK++ ++ ++NDGATI+K +
Sbjct: 2 GADEERAETARLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDGATILKNI 61
Query: 73 DIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNAS 132
+ +PAAK+LVD+++ QD EVGDGTT+V +LAAE LREA+ I +HPQ +I +R A+
Sbjct: 62 GVDNPAAKVLVDMSRVQDDEVGDGTTSVTVLAAELLREAESLIAKKIHPQTIIAGWREAT 121
Query: 133 YKAIQKVKELAKSIEGQSLEEKKRL-LSKCAATTLSSKLIGGEKEFFASMVVDAVGAIGD 191
A Q + L +++ S E K R L A TTLSSKL+ K+ F + V+AV +
Sbjct: 122 KAARQAL--LNSAVDHGSDEVKFRQDLMNIAGTTLSSKLLTHHKDHFTKLAVEAVLRLKG 179
Query: 192 GDRLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFXXXXXXXXXXXXXXXX 251
L I + K GG++ DS+L G K QPK+
Sbjct: 180 SGNLEAIHVIKKLGGSLADSYLDEGFLLDKKIGV----NQPKRIENAKILIANTGMDTDK 235
Query: 252 XXX-XAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRD 310
+ +R+ ++ I AE + +K+++ ++ G ++R I + Q F
Sbjct: 236 IKIFGSRVRVDSTAKVAEIEHAEKEKMKEKVERILKHGINCFINRQLIYNYPEQLFGAAG 295
Query: 311 IFCAGRVAEEDLLRVAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSG 370
+ + R+A TGG + ++ ++ LG+C+ EE +G ++ FSG G
Sbjct: 296 VMAIEHADFVGVERLALVTGGEIASTFDHPELVKLGSCKLIEEVMIGEDKLIHFSGVALG 355
Query: 371 RTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESRAI 430
TIVLRG Q ++EAERSLHDA+ ++ + K+S V GGG +M ++ + Q +
Sbjct: 356 EACTIVLRGATQQILDEAERSLHDALCVLAQTVKDSRTVYGGGCSEMLMAHAVTQLASRT 415
Query: 431 AGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEG-APYGVDINTGG 489
GK + SYAKAL ++P + DNAG+D+ D++ +LR H+ EG G+D+ G
Sbjct: 416 PGKEAVAMESYAKALRMLPTIIADNAGYDSADLVAQLRAAHS----EGKTTAGLDMKEGT 471
Query: 490 IADSFANFVWEPAVVKINAINAATEAACLILSVDETVK 527
I D + E VK + +A EAA +IL VD +K
Sbjct: 472 IGDMSVLGITESFQVKRQVLLSAAEAAEVILRVDNIIK 509
>pdb|3IYG|G Chain G, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 515
Score = 251 bits (641), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 152/523 (29%), Positives = 264/523 (50%), Gaps = 17/523 (3%)
Query: 16 TDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIV 75
T G+ NINA +AD++R+ LGP+ M K++ D G + ++NDG I++ + +
Sbjct: 2 TKRESGRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAILREIQVQ 61
Query: 76 HPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKA 135
HPAAK +++I+++QD EVGDGTT+V++LA E L A+ F+E +HP +I ++R A
Sbjct: 62 HPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRKALDDM 121
Query: 136 IQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKEFFASMVVDAVGAI------ 189
I +K+++ ++ + + +++ +++++K+I ++ +DAV +
Sbjct: 122 ISTLKKISIPVDTSNRDTMLNIIN----SSITTKVISRWSSLACNIALDAVKTVQFEENG 177
Query: 190 -GDGDRLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFXXXXXXXXXXXXX 248
+ D ++K+PGG + DS ++ GV K ++ + K
Sbjct: 178 RKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIKN---PRIVLLDSSLE 234
Query: 249 XXXXXXXAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFAD 308
+I ++ + I+ E I + +Q VV++ I DLA Y
Sbjct: 235 YKKGESQTDIEITREEDFTRILQMEEEYIQQLCEDIIQLKPDVVITEKGISDLAQHYLMR 294
Query: 309 RDIFCAGRVAEEDLLRVAAATGGTVQTSVNNVVDEVLGT-CEHFEERQVGNERFNIFSGC 367
+I RV + D R+A A G + + + +E +GT E +++G+E F + C
Sbjct: 295 ANITAIRRVRKTDNNRIARACGARIVSRPEELREEDVGTGAGLLEIKKIGDEYFTFITEC 354
Query: 368 PSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQES 427
+ TI+LRG + + + E ER+L DA+ + R + +V GGGA +M ++ L ++S
Sbjct: 355 KDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHALTEKS 414
Query: 428 RAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINT 487
+A+ G Q+ + A+ALEVIPR L N G +L LR KH E +GV+ T
Sbjct: 415 KAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCE--TWGVNGET 472
Query: 488 GGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPK 530
G + D +WEP VK+ A E A L+L +D+ V K
Sbjct: 473 GTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRIDDIVSGHK 515
>pdb|3P9D|E Chain E, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|M Chain M, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|EE Chain e, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|MM Chain m, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|E Chain E, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|M Chain M, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|EE Chain e, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|MM Chain m, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 562
Score = 249 bits (637), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 167/536 (31%), Positives = 273/536 (50%), Gaps = 18/536 (3%)
Query: 4 MMQPQIILLKEGTDTSQ-GKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTIS 62
M +P II+ +G Q G S+I A +VA +++++LGPRG+DK++ G +TI+
Sbjct: 25 MGRPFIIVKDQGNKKRQHGLEAKKSHILAARSVASIIKTSLGPRGLDKILISPDGEITIT 84
Query: 63 NDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQ 122
NDGATI+ +++ + AK+LV ++KSQD E+GDGTT VV+LA+ L +A I+ G+HP
Sbjct: 85 NDGATILSQMELDNEIAKLLVQLSKSQDDEIGDGTTGVVVLASALLDQALELIQKGIHPI 144
Query: 123 NLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKEFFASMV 182
+ F A+ AI K++E I + E + L + A T+L SK++ + + FA M
Sbjct: 145 KIANGFDEAAKLAISKLEETCDDISASNDELFRDFLLRAAKTSLGSKIVSKDHDRFAEMA 204
Query: 183 VDAVGAIGDGDR----LNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFXXX 238
V+AV + D DR ++I ++ GG++ DS L+NGV K FS+ Q PK
Sbjct: 205 VEAVINVMDKDRKDVDFDLIKMQGRVGGSISDSKLINGVILDKDFSHP---QMPKCVLPK 261
Query: 239 XXXXXXXXXXXX------XXXXXAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVV 292
++ +S +YQ + E + + +D ++GA VV
Sbjct: 262 EGSDGVKLAILTCPFEPPKPKTKHKLDISSVEEYQKLQTYEQDKFKEMIDDVKKAGADVV 321
Query: 293 LSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAAATGGTVQTSVNNVVDEVLGTCEHFE 352
+ + D A D+ V ++L +A +T G + ++ + LGTC
Sbjct: 322 ICQWGFDDEANHLLLQNDLPAVRWVGGQELEHIAISTNGRIVPRFQDLSKDKLGTCSRIY 381
Query: 353 ERQVGN--ERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVA 410
E++ G +R I +T T +RG ++EAER+LHD++ +VR K+S VV
Sbjct: 382 EQEFGTTKDRMLIIEQSKETKTVTCFVRGSNKMIVDEAERALHDSLCVVRNLVKDSRVVY 441
Query: 411 GGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQK 470
GGGA ++ +S + +E+ G Q+ +A+AL+ IP L +N+G D L+ L+ K
Sbjct: 442 GGGAAEVTMSLAVSEEADKQRGIDQYAFRGFAQALDTIPMTLAENSGLDPIGTLSTLKSK 501
Query: 471 HALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETV 526
+ + GVD G D FV +P + K I AT+ +IL +D +
Sbjct: 502 QL--KEKISNIGVDCLGYGSNDMKELFVVDPFIGKKQQILLATQLCRMILKIDNVI 555
>pdb|3P9D|D Chain D, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|L Chain L, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|DD Chain d, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|LL Chain l, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|D Chain D, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|L Chain L, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|DD Chain d, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|LL Chain l, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 528
Score = 245 bits (626), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 161/529 (30%), Positives = 277/529 (52%), Gaps = 59/529 (11%)
Query: 27 SNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIA 86
+NI A +VAD +R++LGP+GMDK+I +G + ISNDG TI+K + I+HP A++LV+++
Sbjct: 23 ANIIAARSVADAIRTSLGPKGMDKMIKTSRGEIIISNDGHTILKQMAILHPVARMLVEVS 82
Query: 87 KSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSI 146
+QDSE GDGTT+VV+L L A+ + G+HP + SF++A+ +++ + E+ +
Sbjct: 83 AAQDSEAGDGTTSVVILTGALLGAAERLLNKGIHPTIIADSFQSAAKRSVDILLEMCHKV 142
Query: 147 EGQSLEEKKRLLSKCAATTLSSKLIGGEKEFFASMVVDAVGAIGDGDR----LNMIGIKK 202
SL ++++L+ + A+T+LSSK++ F A + VD+V I D + LN I + K
Sbjct: 143 ---SLSDREQLV-RAASTSLSSKIVSQYSSFLAPLAVDSVLKISDENSKNVDLNDIRLVK 198
Query: 203 VPGGTMRDSFLVNGVAFKKT-FSYAGFEQQPKKFXXXXXXXXXXXXXXXXXXXXAEIRLS 261
GGT+ D+ +++GV +T AG + +K + ++S
Sbjct: 199 KVGGTIDDTEMIDGVVLTQTAIKSAGGPTRKEK----------------AKIGLIQFQIS 242
Query: 262 DPSQYQSIVDAEWNII---YDKLDKCVQSGAKVVLS--------------------RLAI 298
P D E NII Y ++DK ++ +L+ R A+
Sbjct: 243 PPKP-----DTENNIIVNDYRQMDKILKEERAYLLNICKKIKKAKCNVLLIQKSILRDAV 297
Query: 299 GDLATQYFADRDIFCAGRVAEEDLLRVAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGN 358
DLA + + +I + E++ ++ G + ++ L + + EE
Sbjct: 298 NDLALHFLSKLNIMVVKDIEREEIEFLSKGLGCKPIADIELFTEDRLDSADLVEEIDSDG 357
Query: 359 ERFNIFSGCPSGR---TATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAI 415
+ +G + T ++V+RG + I+E ERSLHDA+ ++R K ++AGGGA
Sbjct: 358 SKIVRVTGIRNNNARPTVSVVIRGANNMIIDETERSLHDALCVIRCLVKERGLIAGGGAP 417
Query: 416 DMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPT 475
++EIS+ L +E+R++ G F +A ALEVIP L +NAG ++ V+ +LR KH
Sbjct: 418 EIEISRRLSKEARSMEGVQAFIWQEFASALEVIPTTLAENAGLNSIKVVTELRSKHE--N 475
Query: 476 GEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDE 524
GE G+ + G +++ + +P +V +AI A+E IL +D+
Sbjct: 476 GE-LNDGISVRRSGTTNTYEEHILQPVLVSTSAITLASECVKSILRIDD 523
>pdb|3IYG|E Chain E, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 515
Score = 229 bits (584), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 150/517 (29%), Positives = 261/517 (50%), Gaps = 18/517 (3%)
Query: 21 GKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAK 80
G L S+I A AVA+ ++++LGP G+DK++ D G VT++NDGATI+ ++D+ H AK
Sbjct: 8 GLEALKSHIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAK 67
Query: 81 ILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVK 140
++V+++KSQD E+GDGTT VV+LA L EA+ ++ G+HP + + A+ AI+ +
Sbjct: 68 LMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARIAIEHLD 127
Query: 141 ELAKSIEGQSLEEKKRL--LSKCAATTLSSKLIGGEKEFFASMVVDAVGAIGDGDR---- 194
+++ S+ L + K L + A TTL SK++ A + V+AV + D R
Sbjct: 128 KISDSV----LVDMKNTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVLTVADMQRRDVD 183
Query: 195 LNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFXXXXXXXXXXXXXXXXXXX 254
+I ++ GG + D+ L+ GV K FS+ Q PK+
Sbjct: 184 FELIKVEGKVGGRLEDTKLIKGVIVDKDFSHP---QMPKQVEDAKIAILTCPFEPPKPKT 240
Query: 255 XAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCA 314
++ ++ ++++ E + + + ++GA + + + D A D+
Sbjct: 241 KHKLDVTSVEDFKALQKYEKEKFEEMIRQIKETGANLAVCQWGFDDEANHLLLQNDLPAV 300
Query: 315 GRVAEEDLLRVAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGN--ERFNIFSGCPSGRT 372
V ++ +A ATGG + + + E LG +E G ++ + C + R
Sbjct: 301 RWVGGPEIELIAIATGGRIVPRFSELTAEKLGFAGLVKEISFGTTKDKMLVIEQCKNSRA 360
Query: 373 ATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAG 432
TI +RGG IEEA+RSLHDA+ ++R +++ VV GGGA ++ + + QE+
Sbjct: 361 VTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQEADKCPT 420
Query: 433 KSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIAD 492
Q+ + ++A ALEVIP L +N+G + + ++R + G+D G D
Sbjct: 421 LEQYAMRAFADALEVIPMALAENSGMNPIQTMTEVRARQVKEVNPA--LGIDCLHKGTND 478
Query: 493 SFANFVWEPAVVKINAINAATEAACLILSVDETVKNP 529
V E + K I+ AT+ +IL +D+ ++ P
Sbjct: 479 MKHQHVIETLIGKKQQISLATQMVRMILKIDD-IRKP 514
>pdb|3P9D|C Chain C, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|K Chain K, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|CC Chain c, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|KK Chain k, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|C Chain C, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|K Chain K, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|CC Chain c, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|KK Chain k, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 590
Score = 191 bits (484), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 155/595 (26%), Positives = 273/595 (45%), Gaps = 85/595 (14%)
Query: 5 MQPQIILLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISND 64
MQ ++ + + + G+ +SNI A AVADV+R+ LGP+ M K++ D G + ++ND
Sbjct: 1 MQAPVVFMNASQERTTGRQAQISNITAAKAVADVIRTCLGPKAMLKMLLDPMGGLVLTND 60
Query: 65 GATIMKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPF-IEDGVHPQN 123
G I++ +D+ HPAAK +++++++QD EVGDGTTTV++LA E L + P+ IE +HP
Sbjct: 61 GHAILREIDVAHPAAKSMLELSRTQDEEVGDGTTTVIILAGEILAQCAPYLIEKNIHPVI 120
Query: 124 LIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKEFFASMVV 183
+I++ + A A++ +K+++K ++ ++ K+L+ ++ +K + E + +
Sbjct: 121 IIQALKKALTDALEVIKQVSKPVDVENDAAMKKLIQ----ASIGTKYVIHWSEKMCELAL 176
Query: 184 DAV-------GAIGDG------DRLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQ 230
DAV G +G D + ++K+PGG + DS ++ GV K + +
Sbjct: 177 DAVKTVRKDLGQTVEGEPNFEIDIKRYVRVEKIPGGDVLDSRVLKGVLLNKDVVHP---K 233
Query: 231 QPKKFXXXXXXXXXXXXXXXXXXXXAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAK 290
+ I + + I+ E + ++ +
Sbjct: 234 MSRHIENPRVVLLDCPLEYKKGESQTNIEIEKEEDWNRILQIEEEQVQLMCEQILAVRPT 293
Query: 291 VVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAAATGGTVQTSVNNVVDEVLGT-CE 349
+V++ + DLA Y RV + D R+A TG T+ V ++ + +GT C
Sbjct: 294 LVITEKGVSDLAQHYLLKGGCSVLRRVKKSDNNRIARVTGATIVNRVEDLKESDVGTNCG 353
Query: 350 HFEERQVGNERFNIFSGCP-----SGRTATIVLRGGADQ-----FIEEAERSLHDAI--- 396
F+ +G+E F+ C SG + +G + FI + + I
Sbjct: 354 LFKVEMIGDEYFSFLDNCKEPGSGSGWSHPQFEKGSGKRRWKKNFIAVSAANRFKKISSS 413
Query: 397 ----------MIVRRATKNSTVVAGGGAIDM--EISKYLRQESRAIA------------- 431
+ K T++ GG+ D+ EI + L Q++ A+A
Sbjct: 414 GALGSGHHHHHHHHGSGKACTIMLRGGSKDILNEIDRNL-QDAMAVARNVMLSPSLSPGG 472
Query: 432 GKSQFFIN----SYAKALE---------------VIPRQLCDNAGFDATDVLNKLRQKHA 472
G ++ ++ AK LE IPR L NAG D +L++LR KHA
Sbjct: 473 GATEMAVSVKLAEKAKQLEGIQQWPYQAVADAMECIPRTLIQNAGGDPIRLLSQLRAKHA 532
Query: 473 LPTGEGA-PYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETV 526
+G G+D + G I D + +WEP V+K ++ A E+ACL+L VD+ V
Sbjct: 533 ----QGNFTTGIDGDKGKIVDMVSYGIWEPEVIKQQSVKTAIESACLLLRVDDIV 583
>pdb|3IYG|Z Chain Z, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 517
Score = 187 bits (475), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 130/523 (24%), Positives = 249/523 (47%), Gaps = 23/523 (4%)
Query: 17 DTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVH 76
+ ++ +A L NI+A + DV+R+ LGP+G K++ G + ++ DG ++ + I H
Sbjct: 4 EVARAQAALAVNISAARGLQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNVLLHEMQIQH 63
Query: 77 PAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAI 136
P A ++ +A +QD GDGTT+ VL+ E L++A +I +G+HP+ + F A KA+
Sbjct: 64 PTASLIAKVATAQDDITGDGTTSNVLIIGELLKQADLYISEGLHPRIITEGFEAAKEKAL 123
Query: 137 QKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKEFFASMVVDAVGAIGDGDR-- 194
Q ++++ S E + L A T+L +K+ + VVD++ AI D
Sbjct: 124 QFLEQVKVSKEMD-----RETLIDVARTSLRTKVHAELADVLTEAVVDSILAIKKQDEPI 178
Query: 195 -LNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFXXXXXXXXXXXXXXXXXX 253
L M+ I ++ + D+ L+ G+ + + K+
Sbjct: 179 DLFMVEIMEMKHKSETDTSLIRGLVLDHGARHPDMK---KRVEDAYILTCNVSLEYEKTE 235
Query: 254 XXAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKV---------VLSRLAIGDLATQ 304
+ + + +V AE I D++ K ++ KV V+++ I +
Sbjct: 236 VNSGFFYKSAEEREKLVKAERKFIEDRVKKIIELKKKVCGDSDKGFVVINQKGIDPFSLD 295
Query: 305 YFADRDIFCAGRVAEEDLLRVAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIF 364
A I R ++ R+ A GG S++++ + L E +G E+F
Sbjct: 296 ALAKEGIIALRRAKRRNMERLTLACGGIALNSLDDLNPDCLLGHAGVYEYTLGEEKFTFI 355
Query: 365 SGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYLR 424
C + R+ T++++G + + + ++ D + V+ A + VV G GA+++ +++ L
Sbjct: 356 EKCNNPRSVTLLIKGPNKHTLTQIKDAIRDGLRAVKNAIDDGCVVPGAGAVEVAMAEALV 415
Query: 425 QESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVD 484
+ ++ G++Q + ++A AL +IP+ L N+GFD + L K++ +H + G GVD
Sbjct: 416 KYKPSVKGRAQLGVQAFADALLIIPKVLAQNSGFDLQETLVKVQAEH---SESGQLVGVD 472
Query: 485 INTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVK 527
+NTG + +W+ VK +++ T A IL VDE ++
Sbjct: 473 LNTGEPMVAAEAGIWDNYCVKKQLLHSCTVIATNILLVDEIMR 515
>pdb|3P9D|F Chain F, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|N Chain N, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|FF Chain f, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|NN Chain n, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|F Chain F, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|N Chain N, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|FF Chain f, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|NN Chain n, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 546
Score = 181 bits (459), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 139/541 (25%), Positives = 249/541 (46%), Gaps = 18/541 (3%)
Query: 11 LLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMK 70
LL ++ + A L N+ + + V+ + LGP+G K++ D G + ++ DG ++
Sbjct: 5 LLNPKAESLRRDAALKVNVTSAEGLQSVLETNLGPKGTLKMLVDGAGNIKLTKDGKVLLT 64
Query: 71 LLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRN 130
+ I P A ++ A +QD GDGTTTVV L E LR+A FI++GVHP+ + F
Sbjct: 65 EMQIQSPTAVLIARAAAAQDEITGDGTTTVVCLVGELLRQAHRFIQEGVHPRIITDGFEI 124
Query: 131 ASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKEFFASMVVDAVGAIG 190
A ++++ + E I +L + L + A ++L +K+ E +V DAV ++
Sbjct: 125 ARKESMKFLDEF--KISKTNLSNDREFLLQVARSSLLTKVDADLTEVLTPIVTDAVLSVY 182
Query: 191 DGD----RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKK----FXXXXXXX 242
D L+M+ I ++ + +D+ + G+ + + K
Sbjct: 183 DAQADNLDLHMVEIMQMQHLSPKDTTFIKGLVLDHGGRHPDMPTRVKNAYVLILNVSLEY 242
Query: 243 XXXXXXXXXXXXXAEIRLSDPSQYQSIVDAEWNIIYD-KLDKCVQSGAK--VVLSRLAIG 299
A+ R + + VDA+ I D K + C K V++++ I
Sbjct: 243 EKTEVNSGFFYSSADQRDKLAASERKFVDAKLKKIIDLKNEVCGMDPDKGFVIINQKGID 302
Query: 300 DLATQYFADRDIFCAGRVAEEDLLRVAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGNE 359
++ FA +I R ++ R+ TGG Q SV ++ ++LG + +G E
Sbjct: 303 PMSLDVFAKHNILALRRAKRRNMERLQLVTGGEAQNSVEDLSPQILGFSGLVYQETIGEE 362
Query: 360 RFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEI 419
+F + ++ TI+++G + + + ++ D + V K+ ++ G GA + +
Sbjct: 363 KFTYVTENTDPKSCTILIKGSTHYALAQTKDAVRDGLRAVANVLKDKNIIPGAGAFYIAL 422
Query: 420 SKYLRQESR---AIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQK--HALP 474
S+YLR + GK++ I ++A+AL VIP+ L N+GFD DVL + + A
Sbjct: 423 SRYLRSANMNKLGAKGKTKTGIEAFAEALLVIPKTLVKNSGFDPLDVLAMVEDELDDAQD 482
Query: 475 TGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPKVVCK 534
+ E GVD+N G D +W+ V NAI AT A +L DE ++ + K
Sbjct: 483 SDETRYVGVDLNIGDSCDPTIEGIWDSYRVLRNAITGATGIASNLLLCDELLRAGRSTLK 542
Query: 535 Q 535
+
Sbjct: 543 E 543
>pdb|3IYG|Q Chain Q, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 512
Score = 170 bits (430), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 139/514 (27%), Positives = 238/514 (46%), Gaps = 35/514 (6%)
Query: 28 NINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAK 87
NI AC +A R+ GP GM+K++ + + ++ND ATI++ L++ HPAAK++V +
Sbjct: 16 NIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILRELEVQHPAAKMIVMASH 75
Query: 88 SQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKEL----A 143
Q+ EVGDGT V++ A L A+ + G+ +I + A KA + + +L A
Sbjct: 76 MQEQEVGDGTNFVLVFAGALLELAEELLRLGLSVSEVIEGYEIACKKAHEILPDLVCCSA 135
Query: 144 KSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKEFFASMVVDA-VGAIGDGDRLNMIGIK- 201
K++ + ++E LL T++ SK G E F A ++ A V D N+ I+
Sbjct: 136 KNL--RDVDEVSSLLH----TSVMSKQYGNEV-FLAKLIAQACVSIFPDSGHFNVDNIRV 188
Query: 202 -KVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFXXXXXXXXXXXXXXXXXXXXAEIRL 260
K+ G + S +++G+ FKK E + +
Sbjct: 189 CKILGSGVHSSSVLHGMVFKKET-----EGDVTSVKDAKIAVYSCPFDGMITETKGTVLI 243
Query: 261 SDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEE 320
+ + E N++ ++ +GA VV++ + D+A Y +I ++
Sbjct: 244 KSAEELMNFSKGEENLMDAQVKAIADTGANVVVTGGRVADMALHYANKYNIMLVRLNSKW 303
Query: 321 DLLRVAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSG-CPSGRTATIVLRG 379
DL R+ G T +N V E +G C+ +VG+ + +F G +TIVLRG
Sbjct: 304 DLRRLCKTVGATALPRLNPPVLEEMGHCDSVYLSEVGDTQVVVFKHEKEDGAISTIVLRG 363
Query: 380 GADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFIN 439
D +++ ER++ D + + T++ +V GGGA ++E++K + G Q+ I
Sbjct: 364 STDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELAKQITSYGETCPGLEQYAIK 423
Query: 440 SYAKALEVIPRQLCDNAGFDATDVLNKLRQKH-------ALPTGEGAPYGVDINTGGIAD 492
+A+A E IPR L +N+G A +V++KL H L P D+ G+ D
Sbjct: 424 KFAEAFEAIPRALAENSGVKANEVISKLYAVHQEGNKNVGLDIEAEVPAVKDMLEAGVLD 483
Query: 493 SFANFVWEPAVVKINAINAATEAACLILSVDETV 526
++ W AI AT AA +L VD+ +
Sbjct: 484 TYLGKYW--------AIKLATNAAVTVLRVDQII 509
>pdb|3P9D|H Chain H, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|P Chain P, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|HH Chain h, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|PP Chain p, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|H Chain H, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|P Chain P, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|HH Chain h, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|PP Chain p, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 568
Score = 168 bits (426), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 143/544 (26%), Positives = 250/544 (45%), Gaps = 31/544 (5%)
Query: 7 PQIILLKEGTDT-SQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDG 65
P L K+G ++ S Q++ +I A + + +++GP G +K+I + G + I+ND
Sbjct: 9 PNAGLFKQGYNSYSNADGQIIKSIAAIRELHQMCLTSMGPCGRNKIIVNHLGKIIITNDA 68
Query: 66 ATIMKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLI 125
AT+++ LDIVHPA K+LV + Q ++GDGT V++LA E L ++ I G+ +I
Sbjct: 69 ATMLRELDIVHPAVKVLVMATEQQKIDMGDGTNLVMILAGELLNVSEKLISMGLSAVEII 128
Query: 126 RSFRNASYKAIQKVKELAKSIEGQSLEEK-KRLLSKCAATTLSSKLIGGEKEFFASMVVD 184
+ + A + KEL + + G+ ++ K L K +SSK G E + + +V +
Sbjct: 129 QGYNMARKFTL---KELDEMVVGEITDKNDKNELLKMIKPVISSKKYGSE-DILSELVSE 184
Query: 185 AVGAI-------GDGDRLNMIGIK--KVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKF 235
AV + G+ N+ I+ K+ GG++ +S ++ G+ F + G + +
Sbjct: 185 AVSHVLPVAQQAGEIPYFNVDSIRVVKIMGGSLSNSTVIKGMVFNR--EPEGHVKSLSED 242
Query: 236 XXXXXXXXXXXXXXXXXXXXAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSR 295
+ L + + E I + + G + +++
Sbjct: 243 KKHKVAVFTCPLDIANTETKGTVLLHNAQEMLDFSKGEEKQIDAMMKEIADMGVECIVAG 302
Query: 296 LAIGDLATQYFADRDIFCAGRVAEEDLLRVAAATGGTVQTSVNNVVDEVLGTCEHFEERQ 355
+G+LA Y I ++ +L R+ G T + E LG E + +
Sbjct: 303 AGVGELALHYLNRYGILVLKVPSKFELRRLCRVCGATPLPRLGAPTPEELGLVETVKTME 362
Query: 356 VGNERFNIFSGCPS--GRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNS--TVVAG 411
+G +R +F RT+TI+LRG +++ ER++ D + V+ K S ++ G
Sbjct: 363 IGGDRVTVFKQEQGEISRTSTIILRGATQNNLDDIERAIDDGVAAVKGLMKPSGGKLLPG 422
Query: 412 GGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKH 471
GA ++E+ + + G Q I +A A EV+PR L + AG D +VL L H
Sbjct: 423 AGATEIELISRITKYGERTPGLLQLAIKQFAVAFEVVPRTLAETAGLDVNEVLPNLYAAH 482
Query: 472 ALPTGEGAP------YGVDIN---TGGIADSFANFVWEPAVVKINAINAATEAACLILSV 522
+ T GA GVDI+ G+ D +++ K AIN ATEAA +LS+
Sbjct: 483 NV-TEPGAVKTDHLYKGVDIDGESDEGVKDIREENIYDMLATKKFAINVATEAATTVLSI 541
Query: 523 DETV 526
D+ +
Sbjct: 542 DQII 545
>pdb|1ASS|A Chain A, Apical Domain Of The Chaperonin From Thermoplasma
Acidophilum
pdb|1ASX|A Chain A, Apical Domain Of The Chaperonin From Thermoplasma
Acidophilum
Length = 159
Score = 85.5 bits (210), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 67/114 (58%)
Query: 256 AEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAG 315
A++++SDPS+ Q ++ E N ++K +SGA VVL + I D+A Y A I+
Sbjct: 40 AKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGANVVLCQKGIDDVAQHYLAKEGIYAVR 99
Query: 316 RVAEEDLLRVAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPS 369
RV + D+ ++A ATG + T ++++ VLG E EER++G++R GC +
Sbjct: 100 RVKKSDMEKLAKATGAKIVTDLDDLTPSVLGEAETVEERKIGDDRMTFVMGCKN 153
>pdb|3RTK|A Chain A, Crystal Structure Of Cpn60.2 From Mycobacterium
Tuberculosis At 2.8a
pdb|3RTK|B Chain B, Crystal Structure Of Cpn60.2 From Mycobacterium
Tuberculosis At 2.8a
Length = 546
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 76/145 (52%), Gaps = 10/145 (6%)
Query: 32 CTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHP----AAKILVDIAK 87
A+AD V+ TLGP+G + ++ G TI+NDG +I K +++ P A+++ ++AK
Sbjct: 19 LNALADAVKVTLGPKGRNVVLEKKWGAPTITNDGVSIAKEIELEDPYEKIGAELVKEVAK 78
Query: 88 SQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIE 147
D GDGTTT +LA +RE + G +P L R KA++KV E ++
Sbjct: 79 KTDDVAGDGTTTATVLAQALVREGLRNVAAGANPLGLKRGIE----KAVEKVTETL--LK 132
Query: 148 GQSLEEKKRLLSKCAATTLSSKLIG 172
G E K ++ AA + + IG
Sbjct: 133 GAKEVETKEQIAATAAISAGDQSIG 157
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 70/155 (45%), Gaps = 12/155 (7%)
Query: 376 VLRGGADQFIEEAERS--LHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGK 433
V++ GA +E ER + DA+ + A + +VAGGG ++ + L + + G
Sbjct: 376 VIKAGAATEVELKERKHRIEDAVRNAKAAVEEG-IVAGGGVTLLQAAPTL--DELKLEGD 432
Query: 434 SQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADS 493
N ALE +Q+ N+G + V K+R LP G +G++ TG D
Sbjct: 433 EATGANIVKVALEAPLKQIAFNSGLEPGVVAEKVRN---LPAG----HGLNAQTGVYEDL 485
Query: 494 FANFVWEPAVVKINAINAATEAACLILSVDETVKN 528
A V +P V +A+ A A L L+ + V +
Sbjct: 486 LAAGVADPVKVTRSALQNAASIAGLFLTTEAVVAD 520
>pdb|1E0R|B Chain B, Beta-Apical Domain Of Thermosome
Length = 159
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 61/110 (55%)
Query: 258 IRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRV 317
+R+ DPS Q + E N++ + +DK GA VV+++ I D+A Y + I+ RV
Sbjct: 42 LRIEDPSMIQKFLAQEENMLREMVDKIKSVGANVVITQKGIDDMAQHYLSRAGIYAVRRV 101
Query: 318 AEEDLLRVAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGC 367
+ D+ ++A ATG ++ ++++ + LGT E E+ +VG + +G
Sbjct: 102 KKSDMDKLAKATGASIVSTIDEISSSDLGTAERVEQVKVGEDYMTFVTGS 151
>pdb|1WE3|A Chain A, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|B Chain B, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|C Chain C, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|D Chain D, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|E Chain E, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|F Chain F, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|G Chain G, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|H Chain H, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|I Chain I, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|J Chain J, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|K Chain K, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|L Chain L, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|M Chain M, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|N Chain N, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|AA Chain a, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|BB Chain b, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|CC Chain c, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|DD Chain d, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|EE Chain e, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|FF Chain f, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|GG Chain g, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|HH Chain h, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|II Chain i, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|JJ Chain j, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|KK Chain k, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|LL Chain l, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|MM Chain m, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|NN Chain n, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
Length = 543
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 66/120 (55%), Gaps = 4/120 (3%)
Query: 32 CTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIV----HPAAKILVDIAK 87
AVA+ V+ TLGPRG + ++ G+ TI+ DG T+ K +++ + A++L ++A
Sbjct: 19 VNAVANAVKVTLGPRGRNVVLEKKFGSPTITKDGVTVAKEVELEDHLENIGAQLLKEVAS 78
Query: 88 SQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIE 147
+ GDGTTT +LA +RE + G +P L R A A++K+K LA +E
Sbjct: 79 KTNDVAGDGTTTATVLAQAIVREGLKNVAAGANPLALKRGIEKAVEAAVEKIKALAIPVE 138
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 81/194 (41%), Gaps = 11/194 (5%)
Query: 333 VQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSL 392
++ +N + E+ T + R+ ER +G A I + + ++E +
Sbjct: 340 IEARINGIKKELETTDSEYA-REKLQERLAKLAGG----VAVIRVGAATETELKEKKHRF 394
Query: 393 HDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQL 452
DA+ R A + +V GGG + + + + + G +ALE RQ+
Sbjct: 395 EDALNATRAAVEEG-IVPGGGVTLLRAISAVEELIKKLEGDEATGAKIVRRALEEPARQI 453
Query: 453 CDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAA 512
+NAG++ + ++ ++ + P YG + TG D + +PA V +A+ A
Sbjct: 454 AENAGYEGSVIVQQILAETKNPR-----YGFNAATGEFVDMVEAGIVDPAKVTRSALQNA 508
Query: 513 TEAACLILSVDETV 526
LIL+ + V
Sbjct: 509 ASIGALILTTEAVV 522
>pdb|1IOK|A Chain A, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|B Chain B, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|C Chain C, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|D Chain D, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|E Chain E, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|F Chain F, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|G Chain G, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
Length = 545
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 66/120 (55%), Gaps = 4/120 (3%)
Query: 35 VADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIV----HPAAKILVDIAKSQD 90
+AD V+ TLGP+G + +I G I+ DG ++ K +++ + A+++ ++A +
Sbjct: 23 LADAVKVTLGPKGRNVVIDKSFGAPRITKDGVSVAKEIELSDKFENMGAQMVREVASRTN 82
Query: 91 SEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQS 150
E GDGTTT +LA +RE + G++P +L R A+ K ++ +K A+ + S
Sbjct: 83 DEAGDGTTTATVLAQAIVREGLKAVAAGMNPMDLKRGIDVATAKVVEAIKSAARPVNDSS 142
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 68/150 (45%), Gaps = 10/150 (6%)
Query: 376 VLRGGADQFIEEAERS--LHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGK 433
V+R G IE ER + DA+ R A + VV GG A+ ++ +K L S A + +
Sbjct: 378 VIRVGGMTEIEVKERKDRVDDALNATRAAVQEGIVVGGGVAL-VQGAKVLEGLSGANSDQ 436
Query: 434 SQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADS 493
I +ALE RQ+ +NAG D V K+R+ +G + T D
Sbjct: 437 DAG-IAIIRRALEAPMRQIAENAGVDGAVVAGKVRESS------DKAFGFNAQTEEYGDM 489
Query: 494 FANFVWEPAVVKINAINAATEAACLILSVD 523
F V +PA V A+ A A L+++ +
Sbjct: 490 FKFGVIDPAKVVRTALEDAASVAGLLITTE 519
>pdb|1PCQ|A Chain A, Crystal Structure Of Groel-Groes
pdb|1PCQ|B Chain B, Crystal Structure Of Groel-Groes
pdb|1PCQ|C Chain C, Crystal Structure Of Groel-Groes
pdb|1PCQ|D Chain D, Crystal Structure Of Groel-Groes
pdb|1PCQ|E Chain E, Crystal Structure Of Groel-Groes
pdb|1PCQ|F Chain F, Crystal Structure Of Groel-Groes
pdb|1PCQ|G Chain G, Crystal Structure Of Groel-Groes
pdb|1PCQ|H Chain H, Crystal Structure Of Groel-Groes
pdb|1PCQ|I Chain I, Crystal Structure Of Groel-Groes
pdb|1PCQ|J Chain J, Crystal Structure Of Groel-Groes
pdb|1PCQ|K Chain K, Crystal Structure Of Groel-Groes
pdb|1PCQ|L Chain L, Crystal Structure Of Groel-Groes
pdb|1PCQ|M Chain M, Crystal Structure Of Groel-Groes
pdb|1PCQ|N Chain N, Crystal Structure Of Groel-Groes
pdb|1PF9|A Chain A, Groel-Groes-Adp
pdb|1PF9|B Chain B, Groel-Groes-Adp
pdb|1PF9|C Chain C, Groel-Groes-Adp
pdb|1PF9|D Chain D, Groel-Groes-Adp
pdb|1PF9|E Chain E, Groel-Groes-Adp
pdb|1PF9|F Chain F, Groel-Groes-Adp
pdb|1PF9|G Chain G, Groel-Groes-Adp
pdb|1PF9|H Chain H, Groel-Groes-Adp
pdb|1PF9|I Chain I, Groel-Groes-Adp
pdb|1PF9|J Chain J, Groel-Groes-Adp
pdb|1PF9|K Chain K, Groel-Groes-Adp
pdb|1PF9|L Chain L, Groel-Groes-Adp
pdb|1PF9|M Chain M, Groel-Groes-Adp
pdb|1PF9|N Chain N, Groel-Groes-Adp
pdb|1SVT|A Chain A, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|B Chain B, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|C Chain C, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|D Chain D, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|E Chain E, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|F Chain F, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|G Chain G, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|H Chain H, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|I Chain I, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|J Chain J, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|K Chain K, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|L Chain L, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|M Chain M, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|N Chain N, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SX4|A Chain A, Groel-Groes-Adp7
pdb|1SX4|B Chain B, Groel-Groes-Adp7
pdb|1SX4|C Chain C, Groel-Groes-Adp7
pdb|1SX4|D Chain D, Groel-Groes-Adp7
pdb|1SX4|E Chain E, Groel-Groes-Adp7
pdb|1SX4|F Chain F, Groel-Groes-Adp7
pdb|1SX4|G Chain G, Groel-Groes-Adp7
pdb|1SX4|H Chain H, Groel-Groes-Adp7
pdb|1SX4|I Chain I, Groel-Groes-Adp7
pdb|1SX4|J Chain J, Groel-Groes-Adp7
pdb|1SX4|K Chain K, Groel-Groes-Adp7
pdb|1SX4|L Chain L, Groel-Groes-Adp7
pdb|1SX4|M Chain M, Groel-Groes-Adp7
pdb|1SX4|N Chain N, Groel-Groes-Adp7
pdb|2YNJ|A Chain A, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|B Chain B, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|C Chain C, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|D Chain D, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|E Chain E, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|F Chain F, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|G Chain G, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|H Chain H, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|I Chain I, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|J Chain J, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|K Chain K, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|L Chain L, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|M Chain M, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|N Chain N, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
Length = 524
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 67/131 (51%), Gaps = 4/131 (3%)
Query: 17 DTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIV- 75
D G V + +AD V+ TLGP+G + ++ G TI+ DG ++ + +++
Sbjct: 4 DVKFGNDARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELED 63
Query: 76 ---HPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNAS 132
+ A+++ ++A + GDGTTT +LA + E + G++P +L R A
Sbjct: 64 KFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAV 123
Query: 133 YKAIQKVKELA 143
A++++K L+
Sbjct: 124 TAAVEELKALS 134
>pdb|3C9V|A Chain A, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|B Chain B, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|C Chain C, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|D Chain D, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|E Chain E, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|F Chain F, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|G Chain G, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|H Chain H, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|I Chain I, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|J Chain J, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|K Chain K, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|L Chain L, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|M Chain M, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|N Chain N, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
Length = 526
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 67/131 (51%), Gaps = 4/131 (3%)
Query: 17 DTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIV- 75
D G V + +AD V+ TLGP+G + ++ G TI+ DG ++ + +++
Sbjct: 4 DVKFGNDARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELED 63
Query: 76 ---HPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNAS 132
+ A+++ ++A + GDGTTT +LA + E + G++P +L R A
Sbjct: 64 KFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAV 123
Query: 133 YKAIQKVKELA 143
A++++K L+
Sbjct: 124 TAAVEELKALS 134
>pdb|4AAQ|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
Length = 548
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 67/131 (51%), Gaps = 4/131 (3%)
Query: 17 DTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIV- 75
D G V + +AD V+ TLGP+G + ++ G TI+ DG ++ + +++
Sbjct: 5 DVKFGNDARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELED 64
Query: 76 ---HPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNAS 132
+ A+++ ++A + GDGTTT +LA + E + G++P +L R A
Sbjct: 65 KFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAV 124
Query: 133 YKAIQKVKELA 143
A++++K L+
Sbjct: 125 TAAVEELKALS 135
>pdb|2YEY|A Chain A, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|B Chain B, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|C Chain C, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|D Chain D, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|E Chain E, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|F Chain F, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|G Chain G, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|H Chain H, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|I Chain I, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|J Chain J, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|K Chain K, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|L Chain L, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|M Chain M, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|N Chain N, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
Length = 524
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 67/131 (51%), Gaps = 4/131 (3%)
Query: 17 DTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIV- 75
D G V + +AD V+ TLGP+G + ++ G TI+ DG ++ + +++
Sbjct: 4 DVKFGNDARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELED 63
Query: 76 ---HPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNAS 132
+ A+++ ++A + GDGTTT +LA + E + G++P +L R A
Sbjct: 64 KFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAV 123
Query: 133 YKAIQKVKELA 143
A++++K L+
Sbjct: 124 TAAVEELKALS 134
>pdb|1AON|A Chain A, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|B Chain B, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|C Chain C, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|D Chain D, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|E Chain E, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|F Chain F, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|G Chain G, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|H Chain H, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|I Chain I, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|J Chain J, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|K Chain K, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|L Chain L, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|M Chain M, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|N Chain N, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1GRU|A Chain A, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|B Chain B, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|C Chain C, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|D Chain D, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|E Chain E, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|F Chain F, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|G Chain G, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|H Chain H, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|I Chain I, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|J Chain J, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|K Chain K, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|L Chain L, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|M Chain M, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|N Chain N, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1MNF|A Chain A, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|B Chain B, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|C Chain C, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|D Chain D, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|E Chain E, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|F Chain F, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|G Chain G, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|H Chain H, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|I Chain I, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|J Chain J, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|K Chain K, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|L Chain L, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|M Chain M, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|N Chain N, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1XCK|A Chain A, Crystal Structure Of Apo Groel
pdb|1XCK|B Chain B, Crystal Structure Of Apo Groel
pdb|1XCK|C Chain C, Crystal Structure Of Apo Groel
pdb|1XCK|D Chain D, Crystal Structure Of Apo Groel
pdb|1XCK|E Chain E, Crystal Structure Of Apo Groel
pdb|1XCK|F Chain F, Crystal Structure Of Apo Groel
pdb|1XCK|G Chain G, Crystal Structure Of Apo Groel
pdb|1XCK|H Chain H, Crystal Structure Of Apo Groel
pdb|1XCK|I Chain I, Crystal Structure Of Apo Groel
pdb|1XCK|J Chain J, Crystal Structure Of Apo Groel
pdb|1XCK|K Chain K, Crystal Structure Of Apo Groel
pdb|1XCK|L Chain L, Crystal Structure Of Apo Groel
pdb|1XCK|M Chain M, Crystal Structure Of Apo Groel
pdb|1XCK|N Chain N, Crystal Structure Of Apo Groel
pdb|2C7C|A Chain A, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|B Chain B, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|C Chain C, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|D Chain D, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|E Chain E, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|F Chain F, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|G Chain G, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|H Chain H, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|I Chain I, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|J Chain J, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|K Chain K, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|L Chain L, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|M Chain M, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|N Chain N, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7D|A Chain A, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|B Chain B, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|C Chain C, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|D Chain D, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|E Chain E, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|F Chain F, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|G Chain G, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|H Chain H, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|I Chain I, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|J Chain J, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|K Chain K, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|L Chain L, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|M Chain M, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|N Chain N, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2CGT|A Chain A, Groel-Adp-Gp31 Complex
pdb|2CGT|B Chain B, Groel-Adp-Gp31 Complex
pdb|2CGT|C Chain C, Groel-Adp-Gp31 Complex
pdb|2CGT|D Chain D, Groel-Adp-Gp31 Complex
pdb|2CGT|E Chain E, Groel-Adp-Gp31 Complex
pdb|2CGT|F Chain F, Groel-Adp-Gp31 Complex
pdb|2CGT|G Chain G, Groel-Adp-Gp31 Complex
pdb|2CGT|H Chain H, Groel-Adp-Gp31 Complex
pdb|2CGT|I Chain I, Groel-Adp-Gp31 Complex
pdb|2CGT|J Chain J, Groel-Adp-Gp31 Complex
pdb|2CGT|K Chain K, Groel-Adp-Gp31 Complex
pdb|2CGT|L Chain L, Groel-Adp-Gp31 Complex
pdb|2CGT|M Chain M, Groel-Adp-Gp31 Complex
pdb|2CGT|N Chain N, Groel-Adp-Gp31 Complex
pdb|2NWC|A Chain A, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|B Chain B, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|C Chain C, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|D Chain D, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|E Chain E, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|F Chain F, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|G Chain G, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|H Chain H, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|I Chain I, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|J Chain J, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|K Chain K, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|L Chain L, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|M Chain M, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|N Chain N, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|3E76|A Chain A, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|B Chain B, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|C Chain C, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|D Chain D, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|E Chain E, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|F Chain F, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|G Chain G, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|H Chain H, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|I Chain I, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|J Chain J, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|K Chain K, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|L Chain L, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|M Chain M, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|N Chain N, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
Length = 547
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 67/131 (51%), Gaps = 4/131 (3%)
Query: 17 DTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIV- 75
D G V + +AD V+ TLGP+G + ++ G TI+ DG ++ + +++
Sbjct: 4 DVKFGNDARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELED 63
Query: 76 ---HPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNAS 132
+ A+++ ++A + GDGTTT +LA + E + G++P +L R A
Sbjct: 64 KFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAV 123
Query: 133 YKAIQKVKELA 143
A++++K L+
Sbjct: 124 TAAVEELKALS 134
>pdb|1J4Z|A Chain A, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|B Chain B, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|C Chain C, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|D Chain D, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|E Chain E, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|F Chain F, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|G Chain G, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|H Chain H, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|I Chain I, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|J Chain J, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|K Chain K, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|L Chain L, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|M Chain M, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|N Chain N, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|O Chain O, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|P Chain P, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|Q Chain Q, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|R Chain R, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|S Chain S, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|T Chain T, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|U Chain U, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|V Chain V, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|W Chain W, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|X Chain X, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|Y Chain Y, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|Z Chain Z, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|1 Chain 1, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|2 Chain 2, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
Length = 547
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 67/131 (51%), Gaps = 4/131 (3%)
Query: 17 DTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIV- 75
D G V + +AD V+ TLGP+G + ++ G TI+ DG ++ + +++
Sbjct: 4 DVKFGNDARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELED 63
Query: 76 ---HPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNAS 132
+ A+++ ++A + GDGTTT +LA + E + G++P +L R A
Sbjct: 64 KFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAV 123
Query: 133 YKAIQKVKELA 143
A++++K L+
Sbjct: 124 TAAVEELKALS 134
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 62/149 (41%), Gaps = 9/149 (6%)
Query: 376 VLRGGADQFIEEAERSLH-DAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKS 434
V++ GA +E E+ +A + RA VVAGGG + ++ L + R
Sbjct: 377 VIKVGAATEVEMKEKKARVEAALHATRAAVEEGVVAGGGVALIRVASKL-ADLRGQNADQ 435
Query: 435 QFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSF 494
I +A+E RQ+ N G + + V N ++ G YG + T +
Sbjct: 436 NVGIKVALRAMEAPLRQIVLNCGEEPSVVANTVK-------GGDGNYGYNAATEEYGNMI 488
Query: 495 ANFVWEPAVVKINAINAATEAACLILSVD 523
+ +P V +A+ A A L+++ +
Sbjct: 489 DMGILDPTKVTRSALQYAASVAGLMITTE 517
>pdb|2EU1|A Chain A, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|B Chain B, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|C Chain C, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|D Chain D, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|E Chain E, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|F Chain F, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|G Chain G, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|H Chain H, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|I Chain I, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|J Chain J, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|K Chain K, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|L Chain L, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|M Chain M, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|N Chain N, Crystal Structure Of The Chaperonin Groel-E461k
Length = 548
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 67/131 (51%), Gaps = 4/131 (3%)
Query: 17 DTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIV- 75
D G V + +AD V+ TLGP+G + ++ G TI+ DG ++ + +++
Sbjct: 5 DVKFGNDARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELED 64
Query: 76 ---HPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNAS 132
+ A+++ ++A + GDGTTT +LA + E + G++P +L R A
Sbjct: 65 KFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAV 124
Query: 133 YKAIQKVKELA 143
A++++K L+
Sbjct: 125 TAAVEELKALS 135
>pdb|1SX3|A Chain A, Groel14-(Atpgammas)14
pdb|1SX3|B Chain B, Groel14-(Atpgammas)14
pdb|1SX3|C Chain C, Groel14-(Atpgammas)14
pdb|1SX3|D Chain D, Groel14-(Atpgammas)14
pdb|1SX3|E Chain E, Groel14-(Atpgammas)14
pdb|1SX3|F Chain F, Groel14-(Atpgammas)14
pdb|1SX3|G Chain G, Groel14-(Atpgammas)14
pdb|1SX3|H Chain H, Groel14-(Atpgammas)14
pdb|1SX3|I Chain I, Groel14-(Atpgammas)14
pdb|1SX3|J Chain J, Groel14-(Atpgammas)14
pdb|1SX3|K Chain K, Groel14-(Atpgammas)14
pdb|1SX3|L Chain L, Groel14-(Atpgammas)14
pdb|1SX3|M Chain M, Groel14-(Atpgammas)14
pdb|1SX3|N Chain N, Groel14-(Atpgammas)14
Length = 525
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 65/122 (53%), Gaps = 4/122 (3%)
Query: 26 VSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIV----HPAAKI 81
V + +AD V+ TLGP+G + ++ G TI+ DG ++ + +++ + A++
Sbjct: 13 VKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQM 72
Query: 82 LVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKE 141
+ ++A + GDGTTT +LA + E + G++P +L R A A++++K
Sbjct: 73 VKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTVAVEELKA 132
Query: 142 LA 143
L+
Sbjct: 133 LS 134
>pdb|1SS8|A Chain A, Groel
pdb|1SS8|B Chain B, Groel
pdb|1SS8|C Chain C, Groel
pdb|1SS8|D Chain D, Groel
pdb|1SS8|E Chain E, Groel
pdb|1SS8|F Chain F, Groel
pdb|1SS8|G Chain G, Groel
Length = 524
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 65/122 (53%), Gaps = 4/122 (3%)
Query: 26 VSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIV----HPAAKI 81
V + +AD V+ TLGP+G + ++ G TI+ DG ++ + +++ + A++
Sbjct: 13 VKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQM 72
Query: 82 LVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKE 141
+ ++A + GDGTTT +LA + E + G++P +L R A A++++K
Sbjct: 73 VKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTVAVEELKA 132
Query: 142 LA 143
L+
Sbjct: 133 LS 134
>pdb|1GRL|A Chain A, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|B Chain B, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|C Chain C, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|D Chain D, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|E Chain E, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|F Chain F, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|G Chain G, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
Length = 548
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 65/122 (53%), Gaps = 4/122 (3%)
Query: 26 VSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIV----HPAAKI 81
V + +AD V+ TLGP+G + ++ G TI+ DG ++ + +++ + A++
Sbjct: 14 VKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQM 73
Query: 82 LVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKE 141
+ ++A + GDGTTT +LA + E + G++P +L R A A++++K
Sbjct: 74 VKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTVAVEELKA 133
Query: 142 LA 143
L+
Sbjct: 134 LS 135
>pdb|3CAU|A Chain A, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|B Chain B, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|C Chain C, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|D Chain D, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|E Chain E, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|F Chain F, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|G Chain G, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|H Chain H, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|I Chain I, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|J Chain J, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|K Chain K, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|L Chain L, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|M Chain M, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|N Chain N, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
Length = 526
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 65/122 (53%), Gaps = 4/122 (3%)
Query: 26 VSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIV----HPAAKI 81
V + +AD V+ TLGP+G + ++ G TI+ DG ++ + +++ + A++
Sbjct: 13 VKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQM 72
Query: 82 LVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKE 141
+ ++A + GDGTTT +LA + E + G++P +L R A A++++K
Sbjct: 73 VKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTVAVEELKA 132
Query: 142 LA 143
L+
Sbjct: 133 LS 134
>pdb|1GR5|A Chain A, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|B Chain B, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|C Chain C, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|D Chain D, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|E Chain E, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|F Chain F, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|G Chain G, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|H Chain H, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|I Chain I, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|J Chain J, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|K Chain K, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|L Chain L, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|M Chain M, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|N Chain N, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|2C7E|A Chain A, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|B Chain B, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|C Chain C, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|D Chain D, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|E Chain E, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|F Chain F, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|G Chain G, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|H Chain H, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|I Chain I, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|J Chain J, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|K Chain K, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|L Chain L, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|M Chain M, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|N Chain N, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
Length = 547
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 65/122 (53%), Gaps = 4/122 (3%)
Query: 26 VSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIV----HPAAKI 81
V + +AD V+ TLGP+G + ++ G TI+ DG ++ + +++ + A++
Sbjct: 13 VKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQM 72
Query: 82 LVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKE 141
+ ++A + GDGTTT +LA + E + G++P +L R A A++++K
Sbjct: 73 VKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTVAVEELKA 132
Query: 142 LA 143
L+
Sbjct: 133 LS 134
>pdb|1KP8|A Chain A, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|B Chain B, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|C Chain C, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|D Chain D, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|E Chain E, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|F Chain F, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|G Chain G, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|H Chain H, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|I Chain I, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|J Chain J, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|K Chain K, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|L Chain L, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|M Chain M, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|N Chain N, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
Length = 547
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 65/122 (53%), Gaps = 4/122 (3%)
Query: 26 VSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIV----HPAAKI 81
V + +AD V+ TLGP+G + ++ G TI+ DG ++ + +++ + A++
Sbjct: 13 VKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQM 72
Query: 82 LVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKE 141
+ ++A + GDGTTT +LA + E + G++P +L R A A++++K
Sbjct: 73 VKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTVAVEELKA 132
Query: 142 LA 143
L+
Sbjct: 133 LS 134
>pdb|1OEL|A Chain A, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|B Chain B, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|C Chain C, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|D Chain D, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|E Chain E, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|F Chain F, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|G Chain G, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
Length = 547
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 65/122 (53%), Gaps = 4/122 (3%)
Query: 26 VSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIV----HPAAKI 81
V + +AD V+ TLGP+G + ++ G TI+ DG ++ + +++ + A++
Sbjct: 13 VKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQM 72
Query: 82 LVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKE 141
+ ++A + GDGTTT +LA + E + G++P +L R A A++++K
Sbjct: 73 VKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTVAVEELKA 132
Query: 142 LA 143
L+
Sbjct: 133 LS 134
>pdb|1SJP|A Chain A, Mycobacterium Tuberculosis Chaperonin60.2
pdb|1SJP|B Chain B, Mycobacterium Tuberculosis Chaperonin60.2
Length = 504
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 61/120 (50%), Gaps = 10/120 (8%)
Query: 57 GTVTISNDGATIMKLLDIVHP----AAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAK 112
G TI+NDG +I K +++ P A+++ ++AK D GDGTTT +LA +RE
Sbjct: 2 GAPTITNDGVSIAKEIELEDPYEKIGAELVKEVAKKTDDVAGDGTTTATVLAQALVREGL 61
Query: 113 PFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIG 172
+ G +P L R KA++KV E ++G E K ++ AA + + IG
Sbjct: 62 RNVAAGANPLGLKRGIE----KAVEKVTETL--LKGAKEVETKEQIAATAAISAGDQSIG 115
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 70/155 (45%), Gaps = 12/155 (7%)
Query: 376 VLRGGADQFIEEAERS--LHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGK 433
V++ GA +E ER + DA+ + A + +VAGGG ++ + L + + G
Sbjct: 334 VIKAGAATEVELKERKHRIEDAVRNAKAAVEEG-IVAGGGVTLLQAAPTL--DELKLEGD 390
Query: 434 SQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADS 493
N ALE +Q+ N+G + V K+R LP G +G++ TG D
Sbjct: 391 EATGANIVKVALEAPLKQIAFNSGLEPGVVAEKVRN---LPAG----HGLNAQTGVYEDL 443
Query: 494 FANFVWEPAVVKINAINAATEAACLILSVDETVKN 528
A V +P V +A+ A A L L+ + V +
Sbjct: 444 LAAGVADPVKVTRSALQNAASIAGLFLTTEAVVAD 478
>pdb|1GML|A Chain A, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Triclinic)
pdb|1GML|B Chain B, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Triclinic)
pdb|1GML|C Chain C, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Triclinic)
pdb|1GML|D Chain D, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Triclinic)
pdb|1GN1|A Chain A, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|B Chain B, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|C Chain C, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|D Chain D, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|E Chain E, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|F Chain F, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|G Chain G, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|H Chain H, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
Length = 178
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 59/127 (46%), Gaps = 1/127 (0%)
Query: 256 AEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAG 315
+I ++ + I+ E I+ + +Q VV++ I DLA Y ++
Sbjct: 46 TDIEITREEDFTRILQMEEEYIHQLCEDIIQLKPDVVITEKGISDLAQHYLMRANVTAIR 105
Query: 316 RVAEEDLLRVAAATGGTVQTSVNNVVDEVLGT-CEHFEERQVGNERFNIFSGCPSGRTAT 374
RV + D R+A A G + + + ++ +GT E +++G+E F + C + T
Sbjct: 106 RVRKTDNNRIARACGARIVSRPEELREDDVGTGAGLLEIKKIGDEYFTFITDCKDPKACT 165
Query: 375 IVLRGGA 381
I+LRG +
Sbjct: 166 ILLRGAS 172
>pdb|2F6C|A Chain A, Reaction Geometry And Thermostability Of Pyranose
2-Oxidase From The White-Rot Fungus Peniophora Sp.,
Thermostability Mutant E542k
Length = 595
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 56/147 (38%), Gaps = 21/147 (14%)
Query: 273 EWNIIYDKLDKCVQSGA----KVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAAA 328
EW+ +Y K + Q+G + + L + LA +Y RD ++ L
Sbjct: 166 EWDRLYTKAESYFQTGTDQFKESIRHNLVLNKLAEEYKGQRDF-------QQIPLAATRR 218
Query: 329 TGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEA 388
+ V+ S N V ++ ++ ERFN+F R V+R + IE
Sbjct: 219 SPTFVEWSSANTVFDL----QNRPNTDAPEERFNLFPAVACER----VVRNALNSEIESL 270
Query: 389 ERSLHDAIMIVRRATKNSTVVAGGGAI 415
+HD I R K V GA+
Sbjct: 271 H--IHDLISGDRFEIKADVYVLTAGAV 295
>pdb|2F5V|A Chain A, Reaction Geometry And Thermostability Mutant Of Pyranose
2-Oxidase From The White-Rot Fungus Peniophora Sp
Length = 595
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 56/147 (38%), Gaps = 21/147 (14%)
Query: 273 EWNIIYDKLDKCVQSGA----KVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAAA 328
EW+ +Y K + Q+G + + L + LA +Y RD ++ L
Sbjct: 166 EWDRLYTKAESYFQTGTDQFKESIRHNLVLNKLAEEYKGQRDF-------QQIPLAATRR 218
Query: 329 TGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEA 388
+ V+ S N V ++ ++ ERFN+F R V+R + IE
Sbjct: 219 SPTFVEWSSANTVFDL----QNRPNTDAPEERFNLFPAVACER----VVRNALNSEIESL 270
Query: 389 ERSLHDAIMIVRRATKNSTVVAGGGAI 415
+HD I R K V GA+
Sbjct: 271 H--IHDLISGDRFEIKADVYVLTAGAV 295
>pdb|1TZL|A Chain A, Crystal Structure Of Pyranose 2-Oxidase From The White-Rot
Fungus Peniophora Sp.
pdb|1TZL|B Chain B, Crystal Structure Of Pyranose 2-Oxidase From The White-Rot
Fungus Peniophora Sp.
pdb|1TZL|C Chain C, Crystal Structure Of Pyranose 2-Oxidase From The White-Rot
Fungus Peniophora Sp.
pdb|1TZL|D Chain D, Crystal Structure Of Pyranose 2-Oxidase From The White-Rot
Fungus Peniophora Sp.
pdb|1TZL|E Chain E, Crystal Structure Of Pyranose 2-Oxidase From The White-Rot
Fungus Peniophora Sp.
pdb|1TZL|F Chain F, Crystal Structure Of Pyranose 2-Oxidase From The White-Rot
Fungus Peniophora Sp.
pdb|1TZL|G Chain G, Crystal Structure Of Pyranose 2-Oxidase From The White-Rot
Fungus Peniophora Sp.
pdb|1TZL|H Chain H, Crystal Structure Of Pyranose 2-Oxidase From The White-Rot
Fungus Peniophora Sp
Length = 622
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 56/147 (38%), Gaps = 21/147 (14%)
Query: 273 EWNIIYDKLDKCVQSGA----KVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAAA 328
EW+ +Y K + Q+G + + L + LA +Y RD ++ L
Sbjct: 193 EWDRLYTKAESYFQTGTDQFKESIRHNLVLNKLAEEYKGQRDF-------QQIPLAATRR 245
Query: 329 TGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEA 388
+ V+ S N V ++ ++ ERFN+F R V+R + IE
Sbjct: 246 SPTFVEWSSANTVFDL----QNRPNTDAPEERFNLFPAVACER----VVRNALNSEIESL 297
Query: 389 ERSLHDAIMIVRRATKNSTVVAGGGAI 415
+HD I R K V GA+
Sbjct: 298 H--IHDLISGDRFEIKADVYVLTAGAV 322
>pdb|2JJQ|A Chain A, The Crystal Structure Of Pyrococcus Abyssi Trna
(Uracil-54, C5)-Methyltransferase In Complex With
S-Adenosyl-L- Homocysteine
Length = 425
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 102 LLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSL 151
EF+RE ++ +HP + F+ SY+A+ V+++++ +EG+ +
Sbjct: 248 FWGKEFIRERLDDVDYLIHPNSF---FQTNSYQAVNLVRKVSELVEGEKI 294
>pdb|2VS1|A Chain A, The Crystal Structure Of Pyrococcus Abyssi Trna
(Uracil-54, C5)-Methyltransferase In Complex With
S-Adenosyl-L- Homocysteine
Length = 425
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 102 LLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSL 151
EF+RE ++ +HP + F+ SY+A+ V+++++ +EG+ +
Sbjct: 248 FWGKEFIRERLDDVDYLIHPNSF---FQTNSYQAVNLVRKVSELVEGEKI 294
>pdb|3FDY|A Chain A, Pyranose 2-Oxidase Thermostable Triple Mutant,
T169gE542KV546C
Length = 623
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 55/147 (37%), Gaps = 21/147 (14%)
Query: 273 EWNIIYDKLDKCVQSGA----KVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAAA 328
EW+ +Y K + Q+G + + L + L +Y RD ++ L
Sbjct: 194 EWDRLYTKAESYFQTGTDQFKESIRHNLVLNKLTEEYKGQRDF-------QQIPLAATRR 246
Query: 329 TGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEA 388
+ V+ S N V ++ ++ ERFN+F R V+R + IE
Sbjct: 247 SPTFVEWSSANTVFDL----QNRPNTDAPEERFNLFPAVACER----VVRNALNSEIESL 298
Query: 389 ERSLHDAIMIVRRATKNSTVVAGGGAI 415
+HD I R K V GA+
Sbjct: 299 H--IHDLISGDRFEIKADVYVLTAGAV 323
>pdb|1TT0|A Chain A, Crystal Structure Of Pyranose 2-Oxidase
pdb|1TT0|B Chain B, Crystal Structure Of Pyranose 2-Oxidase
pdb|1TT0|C Chain C, Crystal Structure Of Pyranose 2-Oxidase
pdb|1TT0|D Chain D, Crystal Structure Of Pyranose 2-Oxidase
pdb|2IGK|A Chain A, Crystal Structure Of Recombinant Pyranose 2-Oxidase
pdb|2IGK|B Chain B, Crystal Structure Of Recombinant Pyranose 2-Oxidase
pdb|2IGK|C Chain C, Crystal Structure Of Recombinant Pyranose 2-Oxidase
pdb|2IGK|D Chain D, Crystal Structure Of Recombinant Pyranose 2-Oxidase
pdb|2IGK|E Chain E, Crystal Structure Of Recombinant Pyranose 2-Oxidase
pdb|2IGK|F Chain F, Crystal Structure Of Recombinant Pyranose 2-Oxidase
pdb|2IGK|G Chain G, Crystal Structure Of Recombinant Pyranose 2-Oxidase
pdb|2IGK|H Chain H, Crystal Structure Of Recombinant Pyranose 2-Oxidase
Length = 623
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 55/147 (37%), Gaps = 21/147 (14%)
Query: 273 EWNIIYDKLDKCVQSGA----KVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAAA 328
EW+ +Y K + Q+G + + L + L +Y RD ++ L
Sbjct: 194 EWDRLYTKAESYFQTGTDQFKESIRHNLVLNKLTEEYKGQRDF-------QQIPLAATRR 246
Query: 329 TGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEA 388
+ V+ S N V ++ ++ ERFN+F R V+R + IE
Sbjct: 247 SPTFVEWSSANTVFDL----QNRPNTDAPEERFNLFPAVACER----VVRNALNSEIESL 298
Query: 389 ERSLHDAIMIVRRATKNSTVVAGGGAI 415
+HD I R K V GA+
Sbjct: 299 H--IHDLISGDRFEIKADVYVLTAGAV 323
>pdb|3K4J|A Chain A, Pyranose 2-Oxidase H450q Mutant
Length = 623
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 55/147 (37%), Gaps = 21/147 (14%)
Query: 273 EWNIIYDKLDKCVQSGA----KVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAAA 328
EW+ +Y K + Q+G + + L + L +Y RD ++ L
Sbjct: 194 EWDRLYTKAESYFQTGTDQFKESIRHNLVLNKLTEEYKGQRDF-------QQIPLAATRR 246
Query: 329 TGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEA 388
+ V+ S N V ++ ++ ERFN+F R V+R + IE
Sbjct: 247 SPTFVEWSSANTVFDL----QNRPNTDAPEERFNLFPAVACER----VVRNALNSEIESL 298
Query: 389 ERSLHDAIMIVRRATKNSTVVAGGGAI 415
+HD I R K V GA+
Sbjct: 299 H--IHDLISGDRFEIKADVYVLTAGAV 323
>pdb|3K4B|A Chain A, Pyranose 2-Oxidase T169s Mutant
pdb|3LSK|A Chain A, Pyranose 2-Oxidase T169s Acetate Complex
pdb|3LSK|B Chain B, Pyranose 2-Oxidase T169s Acetate Complex
pdb|3LSK|C Chain C, Pyranose 2-Oxidase T169s Acetate Complex
pdb|3LSK|D Chain D, Pyranose 2-Oxidase T169s Acetate Complex
Length = 623
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 55/147 (37%), Gaps = 21/147 (14%)
Query: 273 EWNIIYDKLDKCVQSGA----KVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAAA 328
EW+ +Y K + Q+G + + L + L +Y RD ++ L
Sbjct: 194 EWDRLYTKAESYFQTGTDQFKESIRHNLVLNKLTEEYKGQRDF-------QQIPLAATRR 246
Query: 329 TGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEA 388
+ V+ S N V ++ ++ ERFN+F R V+R + IE
Sbjct: 247 SPTFVEWSSANTVFDL----QNRPNTDAPEERFNLFPAVACER----VVRNALNSEIESL 298
Query: 389 ERSLHDAIMIVRRATKNSTVVAGGGAI 415
+HD I R K V GA+
Sbjct: 299 H--IHDLISGDRFEIKADVYVLTAGAV 323
>pdb|3BG6|A Chain A, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
pdb|3BG6|B Chain B, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
pdb|3BG6|C Chain C, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
pdb|3BG6|D Chain D, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
pdb|3BG6|E Chain E, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
pdb|3BG6|F Chain F, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
pdb|3BG6|G Chain G, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
pdb|3BG6|H Chain H, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
Length = 623
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 55/147 (37%), Gaps = 21/147 (14%)
Query: 273 EWNIIYDKLDKCVQSGA----KVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAAA 328
EW+ +Y K + Q+G + + L + L +Y RD ++ L
Sbjct: 194 EWDRLYTKAESYFQTGTDQFKESIRHNLVLNKLTEEYKGQRDF-------QQIPLAATRR 246
Query: 329 TGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEA 388
+ V+ S N V ++ ++ ERFN+F R V+R + IE
Sbjct: 247 SPTFVEWSSANTVFDL----QNRPNTDAPEERFNLFPAVACER----VVRNALNSEIESL 298
Query: 389 ERSLHDAIMIVRRATKNSTVVAGGGAI 415
+HD I R K V GA+
Sbjct: 299 H--IHDLISGDRFEIKADVYVLTAGAV 323
>pdb|3LSH|A Chain A, Pyranose 2-Oxidase T169a, Monoclinic
pdb|3LSH|B Chain B, Pyranose 2-Oxidase T169a, Monoclinic
pdb|3LSH|C Chain C, Pyranose 2-Oxidase T169a, Monoclinic
pdb|3LSH|D Chain D, Pyranose 2-Oxidase T169a, Monoclinic
pdb|3LSI|A Chain A, Pyranose 2-Oxidase T169a, Tetragonal
pdb|3LSI|B Chain B, Pyranose 2-Oxidase T169a, Tetragonal
Length = 623
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 55/147 (37%), Gaps = 21/147 (14%)
Query: 273 EWNIIYDKLDKCVQSGA----KVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAAA 328
EW+ +Y K + Q+G + + L + L +Y RD ++ L
Sbjct: 194 EWDRLYTKAESYFQTGTDQFKESIRHNLVLNKLTEEYKGQRDF-------QQIPLAATRR 246
Query: 329 TGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEA 388
+ V+ S N V ++ ++ ERFN+F R V+R + IE
Sbjct: 247 SPTFVEWSSANTVFDL----QNRPNTDAPEERFNLFPAVACER----VVRNALNSEIESL 298
Query: 389 ERSLHDAIMIVRRATKNSTVVAGGGAI 415
+HD I R K V GA+
Sbjct: 299 H--IHDLISGDRFEIKADVYVLTAGAV 323
>pdb|3K4N|A Chain A, Pyranose 2-Oxidase F454aS455AY456A MUTANT
pdb|3K4N|B Chain B, Pyranose 2-Oxidase F454aS455AY456A MUTANT
Length = 623
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 55/147 (37%), Gaps = 21/147 (14%)
Query: 273 EWNIIYDKLDKCVQSGA----KVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAAA 328
EW+ +Y K + Q+G + + L + L +Y RD ++ L
Sbjct: 194 EWDRLYTKAESYFQTGTDQFKESIRHNLVLNKLTEEYKGQRDF-------QQIPLAATRR 246
Query: 329 TGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEA 388
+ V+ S N V ++ ++ ERFN+F R V+R + IE
Sbjct: 247 SPTFVEWSSANTVFDL----QNRPNTDAPEERFNLFPAVACER----VVRNALNSEIESL 298
Query: 389 ERSLHDAIMIVRRATKNSTVVAGGGAI 415
+HD I R K V GA+
Sbjct: 299 H--IHDLISGDRFEIKADVYVLTAGAV 323
>pdb|3K4M|A Chain A, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
pdb|3K4M|B Chain B, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
pdb|3K4M|C Chain C, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
pdb|3K4M|D Chain D, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
pdb|3K4M|E Chain E, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
pdb|3K4M|F Chain F, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
pdb|3K4M|G Chain G, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
pdb|3K4M|H Chain H, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
Length = 623
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 55/147 (37%), Gaps = 21/147 (14%)
Query: 273 EWNIIYDKLDKCVQSGA----KVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAAA 328
EW+ +Y K + Q+G + + L + L +Y RD ++ L
Sbjct: 194 EWDRLYTKAESYFQTGTDQFKESIRHNLVLNKLTEEYKGQRDF-------QQIPLAATRR 246
Query: 329 TGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEA 388
+ V+ S N V ++ ++ ERFN+F R V+R + IE
Sbjct: 247 SPTFVEWSSANTVFDL----QNRPNTDAPEERFNLFPAVACER----VVRNALNSEIESL 298
Query: 389 ERSLHDAIMIVRRATKNSTVVAGGGAI 415
+HD I R K V GA+
Sbjct: 299 H--IHDLISGDRFEIKADVYVLTAGAV 323
>pdb|2IGN|A Chain A, Crystal Structure Of Recombinant Pyranose 2-Oxidase H167a
Mutant
pdb|2IGN|B Chain B, Crystal Structure Of Recombinant Pyranose 2-Oxidase H167a
Mutant
pdb|2IGN|D Chain D, Crystal Structure Of Recombinant Pyranose 2-Oxidase H167a
Mutant
pdb|2IGN|C Chain C, Crystal Structure Of Recombinant Pyranose 2-Oxidase H167a
Mutant
pdb|2IGN|E Chain E, Crystal Structure Of Recombinant Pyranose 2-Oxidase H167a
Mutant
pdb|2IGN|F Chain F, Crystal Structure Of Recombinant Pyranose 2-Oxidase H167a
Mutant
pdb|2IGN|H Chain H, Crystal Structure Of Recombinant Pyranose 2-Oxidase H167a
Mutant
pdb|2IGN|G Chain G, Crystal Structure Of Recombinant Pyranose 2-Oxidase H167a
Mutant
pdb|2IGO|A Chain A, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant With
2- Fluoro-2-Deoxy-D-Glucose
pdb|2IGO|B Chain B, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant With
2- Fluoro-2-Deoxy-D-Glucose
pdb|2IGO|D Chain D, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant With
2- Fluoro-2-Deoxy-D-Glucose
pdb|2IGO|C Chain C, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant With
2- Fluoro-2-Deoxy-D-Glucose
pdb|2IGO|E Chain E, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant With
2- Fluoro-2-Deoxy-D-Glucose
pdb|2IGO|F Chain F, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant With
2- Fluoro-2-Deoxy-D-Glucose
pdb|2IGO|H Chain H, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant With
2- Fluoro-2-Deoxy-D-Glucose
pdb|2IGO|G Chain G, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant With
2- Fluoro-2-Deoxy-D-Glucose
pdb|3LSM|A Chain A, Pyranose 2-Oxidase H167a Mutant With Flavin N(5) Sulfite
Adduct
pdb|3LSM|B Chain B, Pyranose 2-Oxidase H167a Mutant With Flavin N(5) Sulfite
Adduct
pdb|3PL8|A Chain A, Pyranose 2-Oxidase H167a Complex With
3-Deoxy-3-Fluoro-Beta-D-Glucose
Length = 623
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 55/147 (37%), Gaps = 21/147 (14%)
Query: 273 EWNIIYDKLDKCVQSGA----KVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAAA 328
EW+ +Y K + Q+G + + L + L +Y RD ++ L
Sbjct: 194 EWDRLYTKAESYFQTGTDQFKESIRHNLVLNKLTEEYKGQRDF-------QQIPLAATRR 246
Query: 329 TGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEA 388
+ V+ S N V ++ ++ ERFN+F R V+R + IE
Sbjct: 247 SPTFVEWSSANTVFDL----QNRPNTDAPEERFNLFPAVACER----VVRNALNSEIESL 298
Query: 389 ERSLHDAIMIVRRATKNSTVVAGGGAI 415
+HD I R K V GA+
Sbjct: 299 H--IHDLISGDRFEIKADVYVLTAGAV 323
>pdb|2IGM|A Chain A, Crystal Structure Of Recombinant Pyranose 2-Oxidase H548n
Mutant
pdb|2IGM|B Chain B, Crystal Structure Of Recombinant Pyranose 2-Oxidase H548n
Mutant
pdb|2IGM|D Chain D, Crystal Structure Of Recombinant Pyranose 2-Oxidase H548n
Mutant
pdb|2IGM|C Chain C, Crystal Structure Of Recombinant Pyranose 2-Oxidase H548n
Mutant
pdb|2IGM|E Chain E, Crystal Structure Of Recombinant Pyranose 2-Oxidase H548n
Mutant
pdb|2IGM|F Chain F, Crystal Structure Of Recombinant Pyranose 2-Oxidase H548n
Mutant
pdb|2IGM|G Chain G, Crystal Structure Of Recombinant Pyranose 2-Oxidase H548n
Mutant
pdb|2IGM|H Chain H, Crystal Structure Of Recombinant Pyranose 2-Oxidase H548n
Mutant
Length = 623
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 55/147 (37%), Gaps = 21/147 (14%)
Query: 273 EWNIIYDKLDKCVQSGA----KVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAAA 328
EW+ +Y K + Q+G + + L + L +Y RD ++ L
Sbjct: 194 EWDRLYTKAESYFQTGTDQFKESIRHNLVLNKLTEEYKGQRDF-------QQIPLAATRR 246
Query: 329 TGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEA 388
+ V+ S N V ++ ++ ERFN+F R V+R + IE
Sbjct: 247 SPTFVEWSSANTVFDL----QNRPNTDAPEERFNLFPAVACER----VVRNALNSEIESL 298
Query: 389 ERSLHDAIMIVRRATKNSTVVAGGGAI 415
+HD I R K V GA+
Sbjct: 299 H--IHDLISGDRFEIKADVYVLTAGAV 323
>pdb|3K4K|A Chain A, Pyranose 2-Oxidase F454n Mutant
pdb|3K4L|A Chain A, Pyranose 2-Oxidase F454n Mutant In Complex With 2fg
pdb|3K4L|B Chain B, Pyranose 2-Oxidase F454n Mutant In Complex With 2fg
Length = 623
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 55/147 (37%), Gaps = 21/147 (14%)
Query: 273 EWNIIYDKLDKCVQSGA----KVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAAA 328
EW+ +Y K + Q+G + + L + L +Y RD ++ L
Sbjct: 194 EWDRLYTKAESYFQTGTDQFKESIRHNLVLNKLTEEYKGQRDF-------QQIPLAATRR 246
Query: 329 TGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEA 388
+ V+ S N V ++ ++ ERFN+F R V+R + IE
Sbjct: 247 SPTFVEWSSANTVFDL----QNRPNTDAPEERFNLFPAVACER----VVRNALNSEIESL 298
Query: 389 ERSLHDAIMIVRRATKNSTVVAGGGAI 415
+HD I R K V GA+
Sbjct: 299 H--IHDLISGDRFEIKADVYVLTAGAV 323
>pdb|3BG7|A Chain A, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
pdb|3BG7|B Chain B, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
pdb|3BG7|C Chain C, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
pdb|3BG7|D Chain D, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
pdb|3BG7|E Chain E, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
pdb|3BG7|F Chain F, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
pdb|3BG7|G Chain G, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
pdb|3BG7|H Chain H, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
Length = 623
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 55/147 (37%), Gaps = 21/147 (14%)
Query: 273 EWNIIYDKLDKCVQSGA----KVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAAA 328
EW+ +Y K + Q+G + + L + L +Y RD ++ L
Sbjct: 194 EWDRLYTKAESYFQTGTDQFKESIRHNLVLNKLTEEYKGQRDF-------QQIPLAATRR 246
Query: 329 TGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEA 388
+ V+ S N V ++ ++ ERFN+F R V+R + IE
Sbjct: 247 SPTFVEWSSANTVFDL----QNRPNTDAPEERFNLFPAVACER----VVRNALNSEIESL 298
Query: 389 ERSLHDAIMIVRRATKNSTVVAGGGAI 415
+HD I R K V GA+
Sbjct: 299 H--IHDLISGDRFEIKADVYVLTAGAV 323
>pdb|3BLY|A Chain A, Pyranose 2-Oxidase From Trametes Multicolor, E542kL537W
Length = 623
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 55/147 (37%), Gaps = 21/147 (14%)
Query: 273 EWNIIYDKLDKCVQSGA----KVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAAA 328
EW+ +Y K + Q+G + + L + L +Y RD ++ L
Sbjct: 194 EWDRLYTKAESYFQTGTDQFKESIRHNLVLNKLTEEYKGQRDF-------QQIPLAATRR 246
Query: 329 TGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEA 388
+ V+ S N V ++ ++ ERFN+F R V+R + IE
Sbjct: 247 SPTFVEWSSANTVFDL----QNRPNTDAPEERFNLFPAVACER----VVRNALNSEIESL 298
Query: 389 ERSLHDAIMIVRRATKNSTVVAGGGAI 415
+HD I R K V GA+
Sbjct: 299 H--IHDLISGDRFEIKADVYVLTAGAV 323
>pdb|3K4C|A Chain A, Pyranose 2-Oxidase H167aT169G MUTANT
pdb|3K4C|B Chain B, Pyranose 2-Oxidase H167aT169G MUTANT
pdb|3K4C|C Chain C, Pyranose 2-Oxidase H167aT169G MUTANT
pdb|3K4C|D Chain D, Pyranose 2-Oxidase H167aT169G MUTANT
Length = 623
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 55/147 (37%), Gaps = 21/147 (14%)
Query: 273 EWNIIYDKLDKCVQSGA----KVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAAA 328
EW+ +Y K + Q+G + + L + L +Y RD ++ L
Sbjct: 194 EWDRLYTKAESYFQTGTDQFKESIRHNLVLNKLTEEYKGQRDF-------QQIPLAATRR 246
Query: 329 TGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEA 388
+ V+ S N V ++ ++ ERFN+F R V+R + IE
Sbjct: 247 SPTFVEWSSANTVFDL----QNRPNTDAPEERFNLFPAVACER----VVRNALNSEIESL 298
Query: 389 ERSLHDAIMIVRRATKNSTVVAGGGAI 415
+HD I R K V GA+
Sbjct: 299 H--IHDLISGDRFEIKADVYVLTAGAV 323
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,932,008
Number of Sequences: 62578
Number of extensions: 582324
Number of successful extensions: 1679
Number of sequences better than 100.0: 72
Number of HSP's better than 100.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 1498
Number of HSP's gapped (non-prelim): 103
length of query: 562
length of database: 14,973,337
effective HSP length: 104
effective length of query: 458
effective length of database: 8,465,225
effective search space: 3877073050
effective search space used: 3877073050
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)