Query 008527
Match_columns 562
No_of_seqs 156 out of 1498
Neff 8.2
Searched_HMMs 46136
Date Thu Mar 28 13:17:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008527.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008527hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0361 Chaperonin complex com 100.0 3E-111 7E-116 821.7 39.1 528 4-534 1-528 (543)
2 cd03340 TCP1_eta TCP-1 (CTT or 100.0 2E-107 5E-112 889.3 58.9 518 11-530 4-521 (522)
3 TIGR02345 chap_CCT_eta T-compl 100.0 2E-106 4E-111 880.9 57.7 518 7-529 2-520 (522)
4 TIGR02347 chap_CCT_zeta T-comp 100.0 7E-106 2E-110 874.2 60.5 513 10-532 3-529 (531)
5 TIGR02339 thermosome_arch ther 100.0 5E-106 1E-110 878.2 58.0 507 11-527 4-518 (519)
6 PTZ00212 T-complex protein 1 s 100.0 2E-105 4E-110 874.3 60.5 522 4-533 3-530 (533)
7 TIGR02344 chap_CCT_gamma T-com 100.0 1E-105 3E-110 876.1 58.0 510 11-530 4-523 (525)
8 cd03336 TCP1_beta TCP-1 (CTT o 100.0 4E-105 8E-110 869.6 61.0 511 12-530 2-515 (517)
9 cd03343 cpn60 cpn60 chaperonin 100.0 2E-105 3E-110 875.2 57.8 508 11-528 3-516 (517)
10 cd03339 TCP1_epsilon TCP-1 (CT 100.0 4E-105 9E-110 871.7 56.4 513 8-527 6-526 (526)
11 cd03335 TCP1_alpha TCP-1 (CTT 100.0 1E-104 2E-109 868.7 57.4 504 18-530 3-527 (527)
12 TIGR02343 chap_CCT_epsi T-comp 100.0 1E-104 3E-109 866.0 57.7 516 6-528 8-531 (532)
13 TIGR02341 chap_CCT_beta T-comp 100.0 2E-103 5E-108 854.3 59.9 513 11-531 2-517 (519)
14 TIGR02342 chap_CCT_delta T-com 100.0 1E-103 3E-108 857.0 57.3 502 18-528 4-516 (517)
15 cd03338 TCP1_delta TCP-1 (CTT 100.0 2E-103 5E-108 857.4 57.5 503 17-528 2-515 (515)
16 TIGR02340 chap_CCT_alpha T-com 100.0 1E-102 2E-107 853.8 59.7 510 16-533 5-534 (536)
17 TIGR02346 chap_CCT_theta T-com 100.0 5E-102 1E-106 845.9 59.3 513 11-535 5-526 (531)
18 cd03342 TCP1_zeta TCP-1 (CTT o 100.0 2E-101 4E-106 833.6 55.0 477 14-529 3-483 (484)
19 cd03337 TCP1_gamma TCP-1 (CTT 100.0 2.5E-99 5E-104 816.7 50.6 467 11-527 4-479 (480)
20 KOG0363 Chaperonin complex com 100.0 9E-100 2E-104 736.7 38.8 521 7-535 2-525 (527)
21 KOG0358 Chaperonin complex com 100.0 4.2E-99 9E-104 735.4 34.1 502 17-528 20-533 (534)
22 COG0459 GroL Chaperonin GroEL 100.0 7.8E-97 2E-101 792.1 50.3 504 15-532 3-517 (524)
23 cd00309 chaperonin_type_I_II c 100.0 4E-96 9E-101 792.0 53.6 459 18-527 3-464 (464)
24 cd03341 TCP1_theta TCP-1 (CTT 100.0 6.3E-96 1E-100 788.7 52.5 460 19-528 4-471 (472)
25 PF00118 Cpn60_TCP1: TCP-1/cpn 100.0 1.6E-92 3.4E-97 771.0 51.6 483 35-530 1-485 (485)
26 PRK12849 groEL chaperonin GroE 100.0 1.1E-90 2.3E-95 754.5 53.4 465 17-534 4-528 (542)
27 PRK00013 groEL chaperonin GroE 100.0 9.7E-91 2.1E-95 754.8 52.9 465 17-532 4-527 (542)
28 PTZ00114 Heat shock protein 60 100.0 4.8E-90 1E-94 753.1 53.9 468 17-535 16-546 (555)
29 PRK12851 groEL chaperonin GroE 100.0 9.8E-90 2.1E-94 747.7 53.3 464 17-532 5-527 (541)
30 PRK12850 groEL chaperonin GroE 100.0 5.6E-89 1.2E-93 742.2 53.7 464 17-532 5-527 (544)
31 KOG0364 Chaperonin complex com 100.0 3.9E-92 8.5E-97 698.3 26.1 518 5-532 1-524 (527)
32 cd03344 GroEL GroEL_like type 100.0 6.8E-89 1.5E-93 738.6 52.5 458 17-527 2-519 (520)
33 TIGR02348 GroEL chaperonin Gro 100.0 1.2E-88 2.6E-93 738.1 52.4 461 17-530 3-523 (524)
34 PRK12852 groEL chaperonin GroE 100.0 1.7E-88 3.6E-93 740.3 53.2 464 17-532 5-528 (545)
35 CHL00093 groEL chaperonin GroE 100.0 4.4E-88 9.6E-93 734.5 49.9 463 17-531 4-527 (529)
36 PRK14104 chaperonin GroEL; Pro 100.0 6.6E-87 1.4E-91 725.4 51.0 469 17-537 5-533 (546)
37 PLN03167 Chaperonin-60 beta su 100.0 1.3E-86 2.8E-91 726.7 48.6 468 17-533 58-585 (600)
38 KOG0360 Chaperonin complex com 100.0 1E-87 2.3E-92 672.9 31.0 510 16-533 12-540 (545)
39 KOG0362 Chaperonin complex com 100.0 8.9E-86 1.9E-90 663.5 43.6 520 1-535 1-527 (537)
40 KOG0359 Chaperonin complex com 100.0 2.4E-81 5.2E-86 620.6 26.6 503 14-531 8-517 (520)
41 KOG0357 Chaperonin complex com 100.0 5.7E-69 1.2E-73 518.0 20.9 387 5-531 8-398 (400)
42 KOG0356 Mitochondrial chaperon 100.0 3.8E-61 8.2E-66 492.8 29.7 462 16-533 17-541 (550)
43 cd03334 Fab1_TCP TCP-1 like do 100.0 2.8E-39 6.1E-44 321.4 25.7 228 172-409 17-257 (261)
44 cd03333 chaperonin_like chaper 100.0 2.7E-36 5.8E-41 292.2 23.4 205 156-405 2-209 (209)
45 KOG0230 Phosphatidylinositol-4 99.9 1.3E-23 2.9E-28 236.2 16.2 233 172-414 331-575 (1598)
46 PF09272 Hepsin-SRCR: Hepsin, 41.9 11 0.00023 31.6 0.6 8 551-558 99-106 (110)
47 cd00851 MTH1175 This uncharact 37.2 52 0.0011 27.1 4.2 39 279-318 54-92 (103)
48 COG1433 Uncharacterized conser 35.1 99 0.0022 27.0 5.5 40 279-319 56-95 (121)
49 TIGR00129 fdhD_narQ formate de 33.9 35 0.00076 33.6 2.9 43 278-320 182-224 (237)
50 PF02579 Nitro_FeMo-Co: Dinitr 33.5 70 0.0015 25.8 4.3 37 279-316 44-80 (94)
51 PRK00724 formate dehydrogenase 31.5 39 0.00085 33.8 2.8 43 278-320 211-253 (263)
52 cd00562 NifX_NifB This CD repr 31.4 97 0.0021 25.3 4.9 38 280-318 53-90 (102)
53 PF08421 Methyltransf_13: Puta 29.5 41 0.00089 25.5 2.0 28 523-559 22-49 (62)
54 cd01143 YvrC Periplasmic bindi 27.1 1.3E+02 0.0028 27.8 5.4 51 281-331 53-110 (195)
55 PF12846 AAA_10: AAA-like doma 25.6 1.4E+02 0.0031 29.5 5.8 57 276-332 241-302 (304)
56 COG1526 FdhD Uncharacterized p 25.2 80 0.0017 31.6 3.7 44 278-321 211-254 (266)
57 PF02634 FdhD-NarQ: FdhD/NarQ 23.7 57 0.0012 32.0 2.3 42 278-319 182-223 (236)
58 cd01144 BtuF Cobalamin binding 23.2 1.6E+02 0.0035 28.4 5.5 52 281-332 50-108 (245)
59 PRK09534 btuF corrinoid ABC tr 21.8 1.5E+02 0.0032 31.0 5.2 52 280-331 111-169 (359)
60 PRK13600 putative ribosomal pr 20.3 3.1E+02 0.0067 22.3 5.5 49 278-326 19-71 (84)
No 1
>KOG0361 consensus Chaperonin complex component, TCP-1 eta subunit (CCT7) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-111 Score=821.74 Aligned_cols=528 Identities=76% Similarity=1.144 Sum_probs=515.5
Q ss_pred cCchhHhhccccccccccHHHHHHHHHHHHHHHHHhhhccCCCCCceeeeCCCCCeEEecCHHHHhccccccChHHHHHH
Q 008527 4 MMQPQIILLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILV 83 (562)
Q Consensus 4 ~~~~~~~~~~~~~~~~~g~~~~~~n~~~~~~l~~iv~sslGP~G~~kmI~~~~g~~~iTnDG~tIl~~l~~~hP~akll~ 83 (562)
||+||+..++++++.++|.-++.+|++||..+++.++|||||+|++|+|++..|+++|||||+||||.|++-||++|.|+
T Consensus 1 ~m~~~ii~lkegtd~sqGk~QlvSNInaC~~v~e~~rtTLGP~GmDkLivd~~g~~tIsNDGATIlKlldivhPaaktlV 80 (543)
T KOG0361|consen 1 MMQPPIILLKEGTDPSQGKGQLVSNINACTAVAEALRTTLGPRGMDKLIVDSKGKTTISNDGATILKLLDIVHPAAKTLV 80 (543)
T ss_pred CCCCCEEEeecccCcccCchhhhhchHHHHHHHHHHHhccCccccceeeecCCCcEEEecCcHHHHHHHhhcChhHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcccccCCchhHHHHHHHHHHHHHHHhHHCCCChhhHHHHHHHHHHHHHHHHHhhceeccCCChHHHHHHHHHHHH
Q 008527 84 DIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAA 163 (562)
Q Consensus 84 ~~~~~~~~~~GDGTtt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~v~~~~~~~~~~~l~~ia~ 163 (562)
+.+++||.++||||||+|+|++++|+++-.+++.|+||..|+++|++|...|++.++++++.++..+...-++.|++.|.
T Consensus 81 dia~sQDaEVGDGTTSVv~la~E~lk~~Kpfiedgv~~~~iir~~rka~~l~v~ki~elav~i~~~~~~~~r~lL~KcA~ 160 (543)
T KOG0361|consen 81 DIARSQDAEVGDGTTSVVLLAAEFLKEAKPFIEDGVHPQLIIRAYRKARQLAVEKIKELAVEIDGSSKTELRELLEKCAA 160 (543)
T ss_pred HHHhhccccccCCceeEeeeHHHHHHhhhhHhhcCCCHHHHHHHHHHHHHHHHHHHHHheeEecccchhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999987666667899999999
Q ss_pred HhhccCccCchhHHHHHHHHHHHHHhCCCCCCcceeEEEecCCCcccceeEEEEEEecccCCCcccCCcceecCceEEEe
Q 008527 164 TTLSSKLIGGEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLL 243 (562)
Q Consensus 164 tsl~sk~~~~~~~~ls~li~~Av~~v~~~~d~~~I~i~~i~gg~~~ds~li~Giv~~~~~~~~~~~~~~~~l~n~kIll~ 243 (562)
|+++||++++..++|+++++||+..+....+.+.|+|+|++||.++||.+++|+-|.+.|.+.+|+.+|+++.||||+++
T Consensus 161 T~lsSKlI~~ek~fF~~MvVDAV~~ld~~l~~~mIGIKKV~GG~~~dS~lv~GVAFkKtFsYAGfEqqPKk~~NpkIl~L 240 (543)
T KOG0361|consen 161 TALSSKLIRQEKEFFAKMVVDAVLTLDNDLDLNMIGIKKVPGGAMEDSLLVNGVAFKKTFSYAGFEQQPKKFLNPKILLL 240 (543)
T ss_pred HHhhhhhhhhhHHHHHHHHHHHHHhhccccchhhcceeecCCCccchhhhccceeeeehccccchhhCccccCCceEEEE
Confidence 99999999999999999999999998744378999999999999999999999999999999999999999999999999
Q ss_pred eccccccccccCceEEecCHHhHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcccHHHHHHHHhcCccccCCCChHHHH
Q 008527 244 NIELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLL 323 (562)
Q Consensus 244 ~~~Le~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lIi~~~~v~~~al~~l~~~~I~~v~~v~~~~Le 323 (562)
|-.||.+.++.++++.+.++++++.+.+.||..+.+.++++...|+++|++.-.|.|.|.+||++++|++-++++.+||.
T Consensus 241 nvELElKaEkdNAEiRv~~v~eyQ~iVDAEW~Ii~~KL~ki~~sGAnVVLSkLpIGD~ATQyFAdrdiFCAGRV~~eDl~ 320 (543)
T KOG0361|consen 241 NVELELKAEKDNAEIRVDNVEEYQAIVDAEWNIIYDKLDKIHESGANVVLSKLPIGDLATQYFADRDIFCAGRVPEEDLN 320 (543)
T ss_pred eeeeeecccccCceeecCCHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEecccchHHHHHHhhccCceecCcCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCeEecccCCCCCCcccccceEEEEEECCeEEEEEEcCCCCceEEEEeecCCHHHHHHHHHHHHHHHHHHHHHH
Q 008527 324 RVAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRAT 403 (562)
Q Consensus 324 ~Ia~~TGa~ii~sl~~l~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~~~~TIll~G~t~~~l~e~k~~i~dal~~~~~~l 403 (562)
|+..++|++|.++..++.++.+|+|..|++.++|.+||-+|+||+..+.||++|||+.++.++|.+|++|||++++|.++
T Consensus 321 Rv~~acGGsi~tt~~~i~~~~LG~C~~FeE~QvG~eRyN~Fegcp~aktcTliLRGgaeqfieE~eRSlHDAImIVrral 400 (543)
T KOG0361|consen 321 RVMQACGGSIQTTVSDIKEEVLGTCALFEERQVGGERYNLFEGCPKAKTCTLILRGGAEQFIEETERSLHDAIMIVRRAL 400 (543)
T ss_pred HHHHhcCcchhhhhhhcchhhcchhhhHHHHhhcchhhhhhcCCCccceeEEEEeccHHHHHHHHhhhhhhHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCceeccCCccHHHHHHHHHHHhhhccchHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHhccCCCCCCCceeE
Q 008527 404 KNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGV 483 (562)
Q Consensus 404 ~~~~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~~~~Gi 483 (562)
++..+|+|||++||++|+.|++|+..+++++|+.+.+|++|||.||++|++|+|+|..+++.+||..|+. |. .|+|+
T Consensus 401 kn~~vVaGGGaiEMElSk~lRd~S~ti~gK~q~~i~A~akalEvIPrqLc~NaGfDa~~ilnkLR~rHA~--G~-~w~Gv 477 (543)
T KOG0361|consen 401 KNDSVVAGGGAIEMELSKYLRDYSRTIAGKQQLFINAYAKALEVIPRQLCDNAGFDATNILNKLRQRHAQ--GE-KWYGV 477 (543)
T ss_pred ccCcEeeCCceeeehHHHHHHHhhcccCcHHHHHHHHHHHHHHHhHHHHhhhcCCcHHHHHHHHHHHhhc--CC-ceeee
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998 88 99999
Q ss_pred ecCCCCccccccCCcccchHHHHHHHHHHHHHHHHHHchhHhhcCCCcCCC
Q 008527 484 DINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPKVVCK 534 (562)
Q Consensus 484 d~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~iI~~~~~~~~ 534 (562)
|..++.+.|+++.+||||..||++++..|+|+|++||.+|+.|+++++..+
T Consensus 478 di~~e~i~dn~~~~VwEP~~VK~Nai~aateAa~lIlsvDeTikn~~S~~~ 528 (543)
T KOG0361|consen 478 DINTEGIADNFEKFVWEPSIVKINAITAATEAACLILSVDETIKNPKSQSA 528 (543)
T ss_pred eecccchhhHHHhhccChHHHHHHHHHHHHHhhhheEehhhhhcCCcccCC
Confidence 999999999999999999999999999999999999999999999875544
No 2
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=2.3e-107 Score=889.33 Aligned_cols=518 Identities=76% Similarity=1.157 Sum_probs=496.5
Q ss_pred hccccccccccHHHHHHHHHHHHHHHHHhhhccCCCCCceeeeCCCCCeEEecCHHHHhccccccChHHHHHHHHHHhcc
Q 008527 11 LLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQD 90 (562)
Q Consensus 11 ~~~~~~~~~~g~~~~~~n~~~~~~l~~iv~sslGP~G~~kmI~~~~g~~~iTnDG~tIl~~l~~~hP~akll~~~~~~~~ 90 (562)
+++++.+...|.+++.+|+.||..++++++|||||+||+|||+++.|+++|||||+||+++|+++||+++|+++++++|+
T Consensus 4 ~~~~~~~~~~~~~~~~~ni~a~~~i~~~v~tslGP~G~~kmi~~~~g~~~iTnDG~tIlk~l~~~hP~akll~~~a~~q~ 83 (522)
T cd03340 4 LLKEGTDTSQGKGQLISNINACQAIADAVRTTLGPRGMDKLIVDGRGKVTISNDGATILKLLDIVHPAAKTLVDIAKSQD 83 (522)
T ss_pred cccCCcccccHHHHHHHHHHHHHHHHHHHhcCCCCCcCceEEEcCCCCEEEeccHHHHHHHccccCHHHHHHHHHHHHhH
Confidence 56777788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCchhHHHHHHHHHHHHHHHhHHCCCChhhHHHHHHHHHHHHHHHHHhhceeccCCChHHHHHHHHHHHHHhhccCc
Q 008527 91 SEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKL 170 (562)
Q Consensus 91 ~~~GDGTtt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~v~~~~~~~~~~~l~~ia~tsl~sk~ 170 (562)
+++||||||+++|+++||+++.+++++|+||+.|++||+.|++.+++.|+++++|++..++..+++.+.++|+|+++||+
T Consensus 84 ~~~GDGTtt~viL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~~l~~ia~t~l~sK~ 163 (522)
T cd03340 84 AEVGDGTTSVVVLAGEFLKEAKPFIEDGVHPQIIIRGYRKALQLAIEKIKEIAVNIDKEDKEEQRELLEKCAATALNSKL 163 (522)
T ss_pred hHhCCChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCcccccccHHHHHHHHHHHhccCc
Confidence 99999999999999999999999999999999999999999999999999999998764322346789999999999999
Q ss_pred cCchhHHHHHHHHHHHHHhCCCCCCcceeEEEecCCCcccceeEEEEEEecccCCCcccCCcceecCceEEEeecccccc
Q 008527 171 IGGEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNIELELK 250 (562)
Q Consensus 171 ~~~~~~~ls~li~~Av~~v~~~~d~~~I~i~~i~gg~~~ds~li~Giv~~~~~~~~~~~~~~~~l~n~kIll~~~~Le~~ 250 (562)
.+.++++|++++++|+..++++.|.++|+++++.|++++||++++|++|+++|.+|+|.+||++++||+|++++++||+.
T Consensus 164 ~~~~~~~l~~l~~~A~~~v~~~~~~~~I~i~~i~Ggs~~ds~lv~Giv~~k~~~~~~~~~~~~~~~n~kIll~~~~Le~~ 243 (522)
T cd03340 164 IASEKEFFAKMVVDAVLSLDDDLDLDMIGIKKVPGGSLEDSQLVNGVAFKKTFSYAGFEQQPKKFKNPKILLLNVELELK 243 (522)
T ss_pred chhHHHHHHHHHHHHHHHhcccCChhHheEeeecCCChhhceeeeeEEEecccCccccccCCccccCCeEEEEeCCCCCC
Confidence 99999999999999999997644788999999999999999999999999999999998899999999999999999999
Q ss_pred ccccCceEEecCHHhHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcccHHHHHHHHhcCccccCCCChHHHHHHHHHhC
Q 008527 251 SEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAAATG 330 (562)
Q Consensus 251 ~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lIi~~~~v~~~al~~l~~~~I~~v~~v~~~~Le~Ia~~TG 330 (562)
+++.+.++.++++++++++.+.|+++++++++++++.|+++|+++++|+|.+++||.++||++++++++++|+|||++||
T Consensus 244 ~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~vvl~~~~i~d~a~~~l~~~~I~~~~~v~~~~l~rIa~~tG 323 (522)
T cd03340 244 AEKDNAEVRVEDPEEYQAIVDAEWKIIYDKLEKIVKSGANVVLSKLPIGDLATQYFADRDIFCAGRVPEEDLKRVAQATG 323 (522)
T ss_pred ccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCcHHHHHHHHHCCcEEEEeCCHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEecccCCCCCCcccccceEEEEEECCeEEEEEEcCCCCceEEEEeecCCHHHHHHHHHHHHHHHHHHHHHHhCCceec
Q 008527 331 GTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVA 410 (562)
Q Consensus 331 a~ii~sl~~l~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~~~~TIll~G~t~~~l~e~k~~i~dal~~~~~~l~~~~vvp 410 (562)
|++++++++++++.+|+|+.|++.++|+++|++|+||++++.+||+|||+++..++|.+|+++||++++++++++|++||
T Consensus 324 a~ii~~l~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~~~~TIllrG~t~~~l~E~er~i~Dal~~~~~~i~~~~vvp 403 (522)
T cd03340 324 GSIQTTVSNITDDVLGTCGLFEERQVGGERYNIFTGCPKAKTCTIILRGGAEQFIEEAERSLHDAIMIVRRAIKNDSVVA 403 (522)
T ss_pred CEEeeccccCCccccccceEEEEEEECCEEEEEEECCCCCceEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccHHHHHHHHHHHhhhccchHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHhccCCCCCCCceeEecCCCCc
Q 008527 411 GGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGI 490 (562)
Q Consensus 411 GGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~~~~Gid~~~g~~ 490 (562)
|||++|++++.+|++++...++++++++++||+||+.||++|++|||+|+.+++.+|+..|.. +++.++|+|+.+|++
T Consensus 404 GGG~~E~~ls~~l~~~~~~~~~~~~~~~~~fa~aL~~ip~~La~NaG~d~~~~l~~l~~~h~~--~~~~~~Gid~~~g~i 481 (522)
T cd03340 404 GGGAIEMELSKYLRDYSRTIAGKQQLVINAFAKALEIIPRQLCDNAGFDATDILNKLRQKHAQ--GGGKWYGVDINNEGI 481 (522)
T ss_pred CcCHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--cCCCeeeeeCCCCcc
Confidence 999999999999999988889999999999999999999999999999999999999999976 431479999999999
Q ss_pred cccccCCcccchHHHHHHHHHHHHHHHHHHchhHhhcCCC
Q 008527 491 ADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPK 530 (562)
Q Consensus 491 ~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~iI~~~~ 530 (562)
+||++.|||||+.||+++|+.|+|+|++|||||++|+.++
T Consensus 482 ~d~~~~gV~dp~~vk~~~i~~A~e~a~~iL~id~ii~~~~ 521 (522)
T cd03340 482 ADNFEAFVWEPSLVKINALTAATEAACLILSVDETIKNPK 521 (522)
T ss_pred cchhhcCceEcHHHHHHHHHHHHHHHHHHhhhhhheeCCC
Confidence 9999999999999999999999999999999999998753
No 3
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.7e-106 Score=880.89 Aligned_cols=518 Identities=68% Similarity=1.067 Sum_probs=496.4
Q ss_pred hhHhhccccccccccHHHHHHHHHHHHHHHHHhhhccCCCCCceeeeCCCCCeEEecCHHHHhccccccChHHHHHHHHH
Q 008527 7 PQIILLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIA 86 (562)
Q Consensus 7 ~~~~~~~~~~~~~~g~~~~~~n~~~~~~l~~iv~sslGP~G~~kmI~~~~g~~~iTnDG~tIl~~l~~~hP~akll~~~~ 86 (562)
||..+++++.++..|.+++.+|+.||.+++++|+|||||+||+|||+++.| ++|||||+||+++|+++||+++|++++|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~ni~a~~~i~~~v~ttlGP~G~~k~i~~~~g-~~iTnDG~TIlk~i~~~hP~a~ll~~~a 80 (522)
T TIGR02345 2 PTIVLLKEGTDTSQGKGQLISNINACVAIAEILKTTLGPRGMDKLIVGKNG-ATVSNDGATILKLLDIVHPAAKTLVDIA 80 (522)
T ss_pred CccchhcCCcccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCceEEECCCC-cEEeCcHHHHHHHhcccChHHHHHHHHH
Confidence 555567888889999999999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred HhcccccCCchhHHHHHHHHHHHHHHHhHHCCCChhhHHHHHHHHHHHHHHHHHhhceeccCCChHHHHHHHHHHHHHhh
Q 008527 87 KSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTL 166 (562)
Q Consensus 87 ~~~~~~~GDGTtt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~v~~~~~~~~~~~l~~ia~tsl 166 (562)
++|++++||||||+|+|+++||+++.+++++|+||+.|++||+.|++.+++.|+++++|++..+ ..+++.+.++|+|++
T Consensus 81 ~~q~~~~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~-~~~~~~l~~va~tsl 159 (522)
T TIGR02345 81 KSQDSEVGDGTTSVVILAGELLKEAKPFIEEGVHPQLIIRCYREALMLAIEKLKEIAVTIDEVK-GEQREVLEKCAATAL 159 (522)
T ss_pred HHHHHHhCCCchhHHHHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCcCCcc-cccHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999986421 113578999999999
Q ss_pred ccCccCchhHHHHHHHHHHHHHhCCCC-CCcceeEEEecCCCcccceeEEEEEEecccCCCcccCCcceecCceEEEeec
Q 008527 167 SSKLIGGEKEFFASMVVDAVGAIGDGD-RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNI 245 (562)
Q Consensus 167 ~sk~~~~~~~~ls~li~~Av~~v~~~~-d~~~I~i~~i~gg~~~ds~li~Giv~~~~~~~~~~~~~~~~l~n~kIll~~~ 245 (562)
+||+++.++++|++++++|+..++++. |.++|+++++.||+++||++++|++|+++|.+|+|.+||++++||+|+++++
T Consensus 160 ~sK~~~~~~~~l~~l~~~A~~~v~~~~~~~~~I~i~ki~Ggs~~ds~~v~Giv~~~~~~~~~~~~~~~~~~n~kIll~~~ 239 (522)
T TIGR02345 160 NSKLIAHEKEFFSKMIVDAVLQLDIDDLDLKLIGVKKVQGGSLQDSVLVNGVAFKKTFSYAGFEQQPKKFANPKILLLNV 239 (522)
T ss_pred ccccccchHHHHHHHHHHHHHHHhhccCChhHheEEeecCCCHHhcceecceEEecccCccccccCCceeccceEEEEec
Confidence 999999999999999999999998644 7889999999999999999999999999999999988999999999999999
Q ss_pred cccccccccCceEEecCHHhHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcccHHHHHHHHhcCccccCCCChHHHHHH
Q 008527 246 ELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRV 325 (562)
Q Consensus 246 ~Le~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lIi~~~~v~~~al~~l~~~~I~~v~~v~~~~Le~I 325 (562)
+|++.+++.+..+.++++++++++.+.|+++++++++++++.|+++|+++++|++.+++||.++||+++++++++++++|
T Consensus 240 ~Le~~~~~~~~~i~~~~~~~~~~~~~~e~~~i~~~i~~i~~~g~~vv~~~~~i~d~~~~~L~~~~I~~~~~v~~~dl~ri 319 (522)
T TIGR02345 240 ELELKAEKDNAEIRVEDVEDYQAIVDAEWAIIFRKLEKIVESGANVVLSKLPIGDLATQYFADHNIFCAGRVSDEDLKRV 319 (522)
T ss_pred CcccCccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCccHHHHHHHHHCCcEEEecCCHHHHHHH
Confidence 99999998889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCeEecccCCCCCCcccccceEEEEEECCeEEEEEEcCCCCceEEEEeecCCHHHHHHHHHHHHHHHHHHHHHHhC
Q 008527 326 AAATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKN 405 (562)
Q Consensus 326 a~~TGa~ii~sl~~l~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~~~~TIll~G~t~~~l~e~k~~i~dal~~~~~~l~~ 405 (562)
+++|||++++++++++++.+|+|+.|++.+++++||++|+||++++.|||+|||+|+.+++|.+|+++||++++++++++
T Consensus 320 a~~tga~ii~~~~~l~~~~LG~~~~ie~~~~~~~r~~~~~g~~~~~~~TI~lrG~t~~~l~E~~r~i~DAl~~~~~~~~~ 399 (522)
T TIGR02345 320 VKACGGSIQSTTSDLEADVLGTCALFEERQIGSERYNYFTGCPHAKTCTIILRGGAEQFIEEAERSLHDAIMIVRRALKA 399 (522)
T ss_pred HHHhCCeEEcchhhCChhhccCCceEEEEEECCeEEEEEEcCCCCceEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeccCCccHHHHHHHHHHHhhhccchHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHhccCCCCCCCceeEec
Q 008527 406 STVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDI 485 (562)
Q Consensus 406 ~~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~~~~Gid~ 485 (562)
+++|||||++|++++++|++++...++++++++++|++||+.||++|++|||+|+.+++.+|+..|.. ++ .++|+|+
T Consensus 400 ~~vvpGGG~~e~~ls~~l~~~~~~~~~~~~~~i~~~a~aL~~ip~~La~NaG~d~~~vl~~l~~~h~~--~~-~~~G~d~ 476 (522)
T TIGR02345 400 RKIVAGGGAIEMELSKILREHSKKIDGKQQLIIEAFAKALEIIPRSLCENAGFDSIEILNKLRSRHAK--GG-KWYGVDI 476 (522)
T ss_pred CCEEeCCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc--CC-CccceeC
Confidence 88999999999999999999888889999999999999999999999999999999999999999876 54 7899999
Q ss_pred CCCCccccccCCcccchHHHHHHHHHHHHHHHHHHchhHhhcCC
Q 008527 486 NTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNP 529 (562)
Q Consensus 486 ~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~iI~~~ 529 (562)
.+|++.||++.|||||+.+|+++|+.|+|+|++|||||++|+.+
T Consensus 477 ~~~~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~ 520 (522)
T TIGR02345 477 NTEDIGDNFENFVWEPLLVKKNALKAAFEAACTILSIDETIMNP 520 (522)
T ss_pred CCCcccchhhcCceEcHHHHHHHHHHHHHHHHHHHhHHHHHhCC
Confidence 99999999999999999999999999999999999999999774
No 4
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=7.4e-106 Score=874.21 Aligned_cols=513 Identities=29% Similarity=0.474 Sum_probs=489.7
Q ss_pred hhccccccccccHHHHHHHHHHHHHHHHHhhhccCCCCCceeeeCCCCCeEEecCHHHHhccccccChHHHHHHHHHHhc
Q 008527 10 ILLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQ 89 (562)
Q Consensus 10 ~~~~~~~~~~~g~~~~~~n~~~~~~l~~iv~sslGP~G~~kmI~~~~g~~~iTnDG~tIl~~l~~~hP~akll~~~~~~~ 89 (562)
.+++++.+...|.+++.+|+.||..++++++|||||+||+|||+++.|+++|||||+||+++|+++||+++|++++|++|
T Consensus 3 ~~~~~~~~~~~~~~~~~~ni~a~~~l~~~vkttlGP~G~~Kmi~~~~G~~~ITnDG~TIlk~i~i~hP~a~ll~~~a~~q 82 (531)
T TIGR02347 3 KLLNPKAESLRRDAALMMNINAARGLQDVLKTNLGPKGTLKMLVSGAGDIKLTKDGNVLLNEMQIQHPTASMIARAATAQ 82 (531)
T ss_pred ccccCCcccccHHHHHHHHHHHHHHHHHHHhcCCCCCccceEEEcCCCCEEEeccHHHHHHhccccChHHHHHHHHHHHh
Confidence 35677778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCchhHHHHHHHHHHHHHHHhHHCCCChhhHHHHHHHHHHHHHHHHHhhceecc-CCChHHHHHHHHHHHHHhhcc
Q 008527 90 DSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIE-GQSLEEKKRLLSKCAATTLSS 168 (562)
Q Consensus 90 ~~~~GDGTtt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~v~-~~~~~~~~~~l~~ia~tsl~s 168 (562)
++++||||||+++|+++||+++.+++++|+||..|++||+.|++.+++.|+++++++. ..+ ++.|.++|+|+++|
T Consensus 83 d~~~GDGTTtvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~----~~~l~~ia~tsl~s 158 (531)
T TIGR02347 83 DDITGDGTTSTVILIGELLKQAERYILEGIHPRILTEGFEIARGELLEFLDKFKIKTEDEVD----RELLLNVARTSLRT 158 (531)
T ss_pred hhhhcCcHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCC----HHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999999997763 333 67999999999999
Q ss_pred CccCchhHHHHHHHHHHHHHhCCCC---CCcceeEEEecCCCcccceeEEEEEEecccCCCcccCCcceecCceEEEeec
Q 008527 169 KLIGGEKEFFASMVVDAVGAIGDGD---RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNI 245 (562)
Q Consensus 169 k~~~~~~~~ls~li~~Av~~v~~~~---d~~~I~i~~i~gg~~~ds~li~Giv~~~~~~~~~~~~~~~~l~n~kIll~~~ 245 (562)
|+++.++++|++++++|+..++++. |.++|+++++.|++.+||++++|++|++++.+|+| |++++||+|+++++
T Consensus 159 K~~~~~~~~ls~iv~~Av~~v~~~~~~i~~~~I~i~k~~g~s~~ds~~v~Giv~~~~~~~~~~---~~~~~n~~Ill~~~ 235 (531)
T TIGR02347 159 KLPIDLADQLTEIVVDAVLAIKKDGEQIDLFMVEIMEMKHKSATDTTLIRGLVLDHGARHPDM---PRRVKNAYILTCNV 235 (531)
T ss_pred ccchhhHHHHHHHHHHHHHHHhhcCCCCChhHeEEEEecCCCccccEEEeeEEEecCcCCCCC---ceeccCceEEEEeC
Confidence 9999999999999999999997642 56779999999999999999999999999999874 78999999999999
Q ss_pred cccccccccCceEEecCHHhHHHHHHHHHHHHHHHHHHHHHcC-------Ce---EEEEcCcccHHHHHHHHhcCccccC
Q 008527 246 ELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSG-------AK---VVLSRLAIGDLATQYFADRDIFCAG 315 (562)
Q Consensus 246 ~Le~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~-------~~---lIi~~~~v~~~al~~l~~~~I~~v~ 315 (562)
+|++.+++.+..+.+++.+++..+++.|+++++.++++|++.+ ++ ||+++++|++.+++||.++||++++
T Consensus 236 ~le~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~I~~~~~~~~~~~~~~~~lvi~~k~I~~~a~~~L~~~~I~~i~ 315 (531)
T TIGR02347 236 SLEYEKTEVNSGFFYSNAEQREKLVEAERKFVDDRVKKIIELKKKVCGKSPDKGFVVINQKGIDPPSLDLLAKEGIMALR 315 (531)
T ss_pred CCCCCccccCceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccEEEEeCCCccHHHHHHHHHCCceEEc
Confidence 9999999999999999999999999999999999999999876 25 9999999999999999999999999
Q ss_pred CCChHHHHHHHHHhCCeEecccCCCCCCcccccceEEEEEECCeEEEEEEcCCCCceEEEEeecCCHHHHHHHHHHHHHH
Q 008527 316 RVAEEDLLRVAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDA 395 (562)
Q Consensus 316 ~v~~~~Le~Ia~~TGa~ii~sl~~l~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~~~~TIll~G~t~~~l~e~k~~i~da 395 (562)
++++++|+|||++|||++++++++++++++|+|+.|++..+++++|++|+|+.+++.+||+|||+|+.+++|++|+++||
T Consensus 316 rv~~~~le~ia~~tGa~~i~~l~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~~~~TI~lrG~t~~~l~E~er~l~DA 395 (531)
T TIGR02347 316 RAKRRNMERLTLACGGEALNSVEDLTPECLGWAGLVYETSIGEEKYTFIEEVKNPKSCTILIKGPNDHTIKQIKDAVRDG 395 (531)
T ss_pred cCCHHHHHHHHHHhCCEEecccccCCccccccceEEEEEEECCeEEEEEEcCCCCCeEEEEEeCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999899999999999999999999999999
Q ss_pred HHHHHHHHhCCceeccCCccHHHHHHHHHHHhhhccchHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHhccCCC
Q 008527 396 IMIVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPT 475 (562)
Q Consensus 396 l~~~~~~l~~~~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~ 475 (562)
++++++++++|++|||||++|++++.+|++++...++++++++++|++||+.||++|++|||+|+.+++.+|++.|..
T Consensus 396 l~v~~~~~~~~~vvpGGGa~E~~ls~~l~~~~~~~~~~~~~~i~~fa~ALe~ip~~La~NaG~d~~~vl~~l~~~~~~-- 473 (531)
T TIGR02347 396 LRAVKNAIEDKCVVPGAGAFEIAAYCHLKEEKKSVKGKAKLGVEAFANALLVIPKTLAENSGLDAQDTLVKLEDEHDE-- 473 (531)
T ss_pred HHHHHHHhhCCcEEeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--
Confidence 999999999999999999999999999999988889999999999999999999999999999999999999998876
Q ss_pred CCCCceeEecCCCCccccccCCcccchHHHHHHHHHHHHHHHHHHchhHhhcCCCcC
Q 008527 476 GEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPKVV 532 (562)
Q Consensus 476 ~~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~iI~~~~~~ 532 (562)
++ .++|+|+.+|+++||++.|||||+.+|+++|+.|+|+|++|||||++|+.+|+.
T Consensus 474 ~~-~~~Gid~~~g~~~d~~~~gV~Dp~~vk~~al~~A~e~a~~iLrID~ii~~~~~~ 529 (531)
T TIGR02347 474 GG-EVVGVDLETGEPIDPEIKGIWDNYRVKKQLIQSATVIASQLLLVDEVMRAGRSM 529 (531)
T ss_pred cC-CceeeeccCCCccchhhccCEEcHHHHHHHHHHHHHHHHHHHhHHHHHhCcccc
Confidence 55 789999999999999999999999999999999999999999999999987654
No 5
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal. Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs.
Probab=100.00 E-value=4.9e-106 Score=878.24 Aligned_cols=507 Identities=42% Similarity=0.679 Sum_probs=488.3
Q ss_pred hccccccccccHHHHHHHHHHHHHHHHHhhhccCCCCCceeeeCCCCCeEEecCHHHHhccccccChHHHHHHHHHHhcc
Q 008527 11 LLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQD 90 (562)
Q Consensus 11 ~~~~~~~~~~g~~~~~~n~~~~~~l~~iv~sslGP~G~~kmI~~~~g~~~iTnDG~tIl~~l~~~hP~akll~~~~~~~~ 90 (562)
+++++.+..+|.+++++|+.||..++++++|||||+||+|||+++.|+++|||||+||+++|+++||+++|+++++++|+
T Consensus 4 ~~~~~~~~~~~~~~~~~ni~~~~~i~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~qd 83 (519)
T TIGR02339 4 ILKEGTQRTKGRDAQRNNIAAAKAVAEAVKSTLGPRGMDKMLVDSLGDVTITNDGATILKEMDIEHPAAKMLVEVAKTQD 83 (519)
T ss_pred cccCCcccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCCeeeECCCCCEEEEccHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 45777788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCchhHHHHHHHHHHHHHHHhHHCCCChhhHHHHHHHHHHHHHHHHHhhceeccCCChHHHHHHHHHHHHHhhccCc
Q 008527 91 SEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKL 170 (562)
Q Consensus 91 ~~~GDGTtt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~v~~~~~~~~~~~l~~ia~tsl~sk~ 170 (562)
+++||||||+++|+++|++++.+++++|+||+.|++||+.|++.+++.|+++++|++..+ ++.|.++|+|+++||+
T Consensus 84 ~~~GDGTtt~viL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~v~~~~----~~~L~~ia~tsl~sk~ 159 (519)
T TIGR02339 84 AEVGDGTTTAVVLAGELLEKAEDLLEQGIHPTVIIEGYRKAAEKALEIIDEIATKISPED----RDLLKKVAETSLTGKA 159 (519)
T ss_pred HHhCCCcccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccccCccc----HHHHHHHHHhhhcccc
Confidence 999999999999999999999999999999999999999999999999999999987644 6789999999999999
Q ss_pred c-CchhHHHHHHHHHHHHHhCC---C---C-CCcceeEEEecCCCcccceeEEEEEEecccCCCcccCCcceecCceEEE
Q 008527 171 I-GGEKEFFASMVVDAVGAIGD---G---D-RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILL 242 (562)
Q Consensus 171 ~-~~~~~~ls~li~~Av~~v~~---~---~-d~~~I~i~~i~gg~~~ds~li~Giv~~~~~~~~~~~~~~~~l~n~kIll 242 (562)
. +.+.++|++++++|+.++++ + . |.++|+|+++.||+++||++++|++|++++.++. ||++++||||++
T Consensus 160 ~~~~~~~~ls~l~~~A~~~v~~~~~~g~~~~~~~~I~i~k~~Ggs~~ds~lv~G~vi~~~~~~~~---m~~~i~n~kIll 236 (519)
T TIGR02339 160 SAEVTKDKLANLVVEAVKQVAEKRGDGKYYVDLDNIKIEKKTGGSIDDTELVEGIVVDKEPVHPG---MPKRVKNAKIAL 236 (519)
T ss_pred ccchhHHHHHHHHHHHHHHHhhhccCCCcccCHHHeEEEEccCcChhcceeEeeEEEecCCCCCC---CccccCCCcEEE
Confidence 9 78999999999999999974 1 1 6788999999999999999999999999999875 689999999999
Q ss_pred eeccccccccccCceEEecCHHhHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcccHHHHHHHHhcCccccCCCChHHH
Q 008527 243 LNIELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDL 322 (562)
Q Consensus 243 ~~~~Le~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lIi~~~~v~~~al~~l~~~~I~~v~~v~~~~L 322 (562)
++++||+++++.++++.+++++++.++.++|+++++++++++++.|++||+++++|++.++++|.++||++++++++++|
T Consensus 237 l~~~Le~~~~~~~~~~~i~~~~~~~~~l~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~L~~~gI~~v~~v~~~~L 316 (519)
T TIGR02339 237 LDAPLEVEKTEIDAKIRITDPDQIKKFLDQEEAMLKEMVDKIADAGANVVFCQKGIDDLAQHYLAKAGILAVRRVKKSDI 316 (519)
T ss_pred EeccccccccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEECCCccHHHHHHHHHCCCEEEecCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCeEecccCCCCCCcccccceEEEEEECCeEEEEEEcCCCCceEEEEeecCCHHHHHHHHHHHHHHHHHHHHH
Q 008527 323 LRVAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRA 402 (562)
Q Consensus 323 e~Ia~~TGa~ii~sl~~l~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~~~~TIll~G~t~~~l~e~k~~i~dal~~~~~~ 402 (562)
+|||++|||++++++++++++.+|+|++|++.++|+++|++|+|+.++..+||+|||+|+.+++|.+|+++||+++++++
T Consensus 317 ~rIa~~tGa~ii~~~~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~~r~i~DAl~~~~~~ 396 (519)
T TIGR02339 317 EKLARATGAKIVSSIKEITESDLGYAGLVEERKVGDDKMTFVEGCKNPKAVTILLRGGTEHVVDELERSIQDALHVVASA 396 (519)
T ss_pred HHHHHHhCCEEeCchhhCChhhccCCceEEEEEECCeEEEEEEcCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988999999999999999999999999999999999
Q ss_pred HhCCceeccCCccHHHHHHHHHHHhhhccchHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHhccCCCCCCCcee
Q 008527 403 TKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYG 482 (562)
Q Consensus 403 l~~~~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~~~~G 482 (562)
+++|++|||||++|++++++|++++...++++++++++|++||+.||++|++|||+|+.+++.+|+..|.. ++ .++|
T Consensus 397 ~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~h~~--~~-~~~G 473 (519)
T TIGR02339 397 LEDGKVVAGGGAVEIELALRLRSYARKIGGREQLAIEAFADALEEIPRILAENAGLDPIDALVELRAKHEK--GN-KNAG 473 (519)
T ss_pred hcCCCEeeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--cC-Ccee
Confidence 99999999999999999999999988889999999999999999999999999999999999999998875 55 7899
Q ss_pred EecCCCCccccccCCcccchHHHHHHHHHHHHHHHHHHchhHhhc
Q 008527 483 VDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVK 527 (562)
Q Consensus 483 id~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~iI~ 527 (562)
+|+.+|++.||++.|||||+.+|+++|+.|+|+|++|||||++|+
T Consensus 474 id~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~ 518 (519)
T TIGR02339 474 INVFTGEIEDMLELGVIEPLRVKEQAIKSATEAATMILRIDDVIA 518 (519)
T ss_pred EEcCCCCccchhhccceEcHHHHHHHHHHHHHHHHHHHhHhHHhh
Confidence 999999999999999999999999999999999999999999985
No 6
>PTZ00212 T-complex protein 1 subunit beta; Provisional
Probab=100.00 E-value=1.7e-105 Score=874.34 Aligned_cols=522 Identities=37% Similarity=0.578 Sum_probs=495.4
Q ss_pred cCchhHhhccccccccccHHHHHHHHHHHHHHHHHhhhccCCCCCceeeeCC-----CCCeEEecCHHHHhccccccChH
Q 008527 4 MMQPQIILLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDD-----KGTVTISNDGATIMKLLDIVHPA 78 (562)
Q Consensus 4 ~~~~~~~~~~~~~~~~~g~~~~~~n~~~~~~l~~iv~sslGP~G~~kmI~~~-----~g~~~iTnDG~tIl~~l~~~hP~ 78 (562)
|...|..+++++.+..+|.+++..|+.||..++++++|||||+||+|||+++ .|+++|||||+||+++|+++||+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~a~~~ni~a~~~i~~~vkttlGP~G~~Kmi~~~~~~~~~G~~~iTnDG~TIlk~i~~~hP~ 82 (533)
T PTZ00212 3 MANVPPQVLKQGAQEEKGETARLQSFVGAIAVADLVKTTLGPKGMDKILQPMSEGPRSGNVTVTNDGATILKSVWLDNPA 82 (533)
T ss_pred ccccchHHhcCCcccccHHHHHHHHHHHHHHHHHHHhCCCCCCccceEeecCCCcccCCCEEEeccHHHHHHhccCcCHH
Confidence 3445666788888899999999999999999999999999999999999998 69999999999999999999999
Q ss_pred HHHHHHHHHhcccccCCchhHHHHHHHHHHHHHHHhHHCCCChhhHHHHHHHHHHHHHHHHHhhceeccCCChHHHHHHH
Q 008527 79 AKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLL 158 (562)
Q Consensus 79 akll~~~~~~~~~~~GDGTtt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~v~~~~~~~~~~~l 158 (562)
++|++++|++||+++||||||+|+|+++||+++.+++++|+||..|++||+.|++.+++.|+++++|++..+ ..+++.|
T Consensus 83 akll~~~a~~qd~~~GDGTTtvvvLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~-~~~~~~l 161 (533)
T PTZ00212 83 AKILVDISKTQDEEVGDGTTSVVVLAGELLREAEKLLDQKIHPQTIIEGWRMALDVARKALEEIAFDHGSDE-EKFKEDL 161 (533)
T ss_pred HHHHHHHHHhhhhhhCCchhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCcCCCccc-hhhHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999886532 1236789
Q ss_pred HHHHHHhhccCccCchhHHHHHHHHHHHHHhCCCCCCcceeEEEecCCCcccceeEEEEEEecccCCCcccCCcceecCc
Q 008527 159 SKCAATTLSSKLIGGEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNP 238 (562)
Q Consensus 159 ~~ia~tsl~sk~~~~~~~~ls~li~~Av~~v~~~~d~~~I~i~~i~gg~~~ds~li~Giv~~~~~~~~~~~~~~~~l~n~ 238 (562)
.++|+|+++||+.+.+.+.|++++++|+..+.+..+.++|++++++|++++||++++|+++++++.+ .||++++||
T Consensus 162 ~~va~t~l~sk~~~~~~~~l~~i~~~av~~i~~~~~~~~I~i~ki~Ggsi~ds~lv~G~v~~~~~~~----~~~~~i~n~ 237 (533)
T PTZ00212 162 LNIARTTLSSKLLTVEKDHFAKLAVDAVLRLKGSGNLDYIQIIKKPGGTLRDSYLEDGFILEKKIGV----GQPKRLENC 237 (533)
T ss_pred HHHHHHHhcccccchhHHHHHHHHHHHHHHHhccCCccceEEEEecCcCccccEEEEeEEEecccCC----CCCccccCC
Confidence 9999999999999999999999999999998654478899999999999999999999999999765 368999999
Q ss_pred eEEEeecccccccccc-CceEEecCHHhHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcccHHHHHHHHhcCccccCCC
Q 008527 239 KILLLNIELELKSEKE-NAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRV 317 (562)
Q Consensus 239 kIll~~~~Le~~~~~~-~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lIi~~~~v~~~al~~l~~~~I~~v~~v 317 (562)
||++++++||+++++. ++++.+++++++..+.+.|+++++++++.|++.++++++++++|++.++++|.++||++++++
T Consensus 238 kIll~~~~Le~~k~~~~~~~~~i~~~~~~~~l~~~E~~~i~~~v~~Ii~~gv~vvv~~~~I~d~a~~~L~~~~I~avr~v 317 (533)
T PTZ00212 238 KILVANTPMDTDKIKIYGAKVKVDSMEKVAEIEAAEKEKMKNKVDKILAHGCNVFINRQLIYNYPEQLFAEAGIMAIEHA 317 (533)
T ss_pred cEEEEeCCCCCCcccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCccHHHHHHHHHCCCEEEecC
Confidence 9999999999999987 888999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHhCCeEecccCCCCCCcccccceEEEEEECCeEEEEEEcCCCCceEEEEeecCCHHHHHHHHHHHHHHHH
Q 008527 318 AEEDLLRVAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIM 397 (562)
Q Consensus 318 ~~~~Le~Ia~~TGa~ii~sl~~l~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~~~~TIll~G~t~~~l~e~k~~i~dal~ 397 (562)
++++++|||++|||++++++++++++.+|+|+.|++..+|+++|++|+||+.++.|||+|||+|+.+++|.||+++||++
T Consensus 318 ~~~~l~rIa~~tGa~iis~l~~~~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~er~i~DAl~ 397 (533)
T PTZ00212 318 DFDGMERLAAALGAEIVSTFDTPEKVKLGHCDLIEEIMIGEDKLIRFSGCAKGEACTIVLRGASTHILDEAERSLHDALC 397 (533)
T ss_pred CHHHHHHHHHHhCCEEeecCCCCCHHHccCCceEEEEEECCeEEEEEEccCCCCEEEEEEECCChhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCceeccCCccHHHHHHHHHHHhhhccchHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHhccCCCCC
Q 008527 398 IVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGE 477 (562)
Q Consensus 398 ~~~~~l~~~~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~ 477 (562)
++++++++|++|||||++|++++.+|++++.+.++++++++++|++||+.||++|++|||+|+.+++.+|+..|.. ++
T Consensus 398 vv~~~i~~~~vVpGGGa~e~~ls~~L~~~~~~~~~~~~~~i~~~a~aL~~ip~~La~NaG~d~~~vl~~l~~~h~~--~~ 475 (533)
T PTZ00212 398 VLSQTVKDTRVVLGGGCSEMLMANAVEELAKKVEGKKSLAIEAFAKALRQIPTIIADNGGYDSAELVSKLRAEHYK--GN 475 (533)
T ss_pred HHHHHhhCCCEeeCCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--cC
Confidence 9999999999999999999999999999988889999999999999999999999999999999999999999976 55
Q ss_pred CCceeEecCCCCccccccCCcccchHHHHHHHHHHHHHHHHHHchhHhhcCCCcCC
Q 008527 478 GAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPKVVC 533 (562)
Q Consensus 478 ~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~iI~~~~~~~ 533 (562)
.++|+|+.+|+++||++.|||||+.+|+++|+.|+|+|++|||||++|...|...
T Consensus 476 -~~~G~d~~~g~i~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~id~ii~~~~~~~ 530 (533)
T PTZ00212 476 -KTAGIDMEKGTVGDMKELGITESYKVKLSQLCSATEAAEMILRVDDIIRCAPRQR 530 (533)
T ss_pred -CccceeccCCcccchhhccceecHHHHHHHHHHHHHHHHHHHhhhHhhhcCCccc
Confidence 7899999999999999999999999999999999999999999999999875443
No 7
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.3e-105 Score=876.06 Aligned_cols=510 Identities=32% Similarity=0.591 Sum_probs=488.6
Q ss_pred hccccccccccHHHHHHHHHHHHHHHHHhhhccCCCCCceeeeCCCCCeEEecCHHHHhccccccChHHHHHHHHHHhcc
Q 008527 11 LLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQD 90 (562)
Q Consensus 11 ~~~~~~~~~~g~~~~~~n~~~~~~l~~iv~sslGP~G~~kmI~~~~g~~~iTnDG~tIl~~l~~~hP~akll~~~~~~~~ 90 (562)
+++++.+...|.+++.+|+.||..++++++|||||+||+|||+++.|+++|||||+|||++|+++||+++|++++|++|+
T Consensus 4 ~~~~~~~~~~~~~~~~~ni~a~~~l~~~v~ttlGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~akll~~~a~~q~ 83 (525)
T TIGR02344 4 VLNQNTKRESGRKAQLSNIQAAKAVADIIRTTLGPRAMLKMLLDPMGGIVMTNDGNAILREIDVAHPAAKSMIELSRTQD 83 (525)
T ss_pred eccCCCccccHHHHHHHHHHHHHHHHHHHhcccCCCCCCceEEcCCCCEEEEccHHHHHHhccCCCHHHHHHHHHHHhhh
Confidence 45677788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCchhHHHHHHHHHHHHHHHhHHCCCChhhHHHHHHHHHHHHHHHHHhhceeccCCChHHHHHHHHHHHHHhhccCc
Q 008527 91 SEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKL 170 (562)
Q Consensus 91 ~~~GDGTtt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~v~~~~~~~~~~~l~~ia~tsl~sk~ 170 (562)
+++||||||+++|+++||+++.+++++|+||+.|++||+.|.+.+++.|+++++|++..+ ++.|.++++|+++||+
T Consensus 84 ~~~GDGTtt~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~----~~~l~~i~~t~l~sk~ 159 (525)
T TIGR02344 84 EEVGDGTTSVIILAGEMLSVAEPFLEQNIHPTIIIRAYKKALDDALSVLEEISIPVDVND----DAAMLKLIQSCIGTKF 159 (525)
T ss_pred hhccCCcchhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCC----HHHHHHHHHHhhcccc
Confidence 999999999999999999999999999999999999999999999999999999987654 5789999999999999
Q ss_pred cCchhHHHHHHHHHHHHHhCCCC-------CC-cceeEEEecCCCcccceeEEEEEEecccCCCcccCCcceecCceEEE
Q 008527 171 IGGEKEFFASMVVDAVGAIGDGD-------RL-NMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILL 242 (562)
Q Consensus 171 ~~~~~~~ls~li~~Av~~v~~~~-------d~-~~I~i~~i~gg~~~ds~li~Giv~~~~~~~~~~~~~~~~l~n~kIll 242 (562)
.++|.+.|++++++|+..++++. |. .+|++++++||+++||++++|++|++++.++ +||++++||+|++
T Consensus 160 ~~~~~~~ls~l~~~Ai~~v~~~~~~~~~~~d~~~~I~i~ki~Gg~~~dS~lv~Gvvi~k~~~~~---~m~~~~~n~kIll 236 (525)
T TIGR02344 160 VSRWSDLMCDLALDAVRTVKRDLGNGRKEIDIKRYAKVEKIPGGDIEDSCVLKGVMINKDVTHP---KMRRYIENPRIVL 236 (525)
T ss_pred chhHHHHHHHHHHHHHHHhhccccCCCCccChhhceEEEEecCCChHhcCcccceEEecccCCC---CCccccCCCCEEE
Confidence 99999999999999999997531 22 2589999999999999999999999998876 4689999999999
Q ss_pred eeccccccccccCceEEecCHHhHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcccHHHHHHHHhcCccccCCCChHHH
Q 008527 243 LNIELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDL 322 (562)
Q Consensus 243 ~~~~Le~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lIi~~~~v~~~al~~l~~~~I~~v~~v~~~~L 322 (562)
++++|++.+++.++++.+++++++++++++|+++++++++++.+.+++||++++++++.++++|.++||++++++++++|
T Consensus 237 l~~~Le~~~~~~~~~i~i~~~~~~~~~l~~E~~~l~~~v~~i~~~~~~vIi~~k~I~dla~~~l~~~~I~av~~v~~~~L 316 (525)
T TIGR02344 237 LDCPLEYKKGESQTNVEIMKEEDWNRILQMEEEYVQLMCEDIIAVKPDLVITEKGVSDLAQHYLLKANISAIRRVRKTDN 316 (525)
T ss_pred EecccccccccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCccHHHHHHHhHCCceEEecCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCeEecccCCCCCCcccc-cceEEEEEECCeEEEEEEcCCCCceEEEEeecCCHHHHHHHHHHHHHHHHHHHH
Q 008527 323 LRVAAATGGTVQTSVNNVVDEVLGT-CEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRR 401 (562)
Q Consensus 323 e~Ia~~TGa~ii~sl~~l~~~~lG~-~~~v~~~~ig~~~~~~~~g~~~~~~~TIll~G~t~~~l~e~k~~i~dal~~~~~ 401 (562)
+|||++|||++++++++++++.+|+ |+.|+++++|+++|++|+||++++.|||+|||+|+.+++|+||+++||++++++
T Consensus 317 erIa~~tGa~ii~~l~~l~~~~lG~~~~~v~~~~ig~~~~~~~~g~~~~~~~TIlLrG~t~~~l~E~er~l~DAl~~vk~ 396 (525)
T TIGR02344 317 NRIARACGATIVNRPEELRESDVGTGCGLFEVKKIGDEYFTFFTECKDPKACTILLRGASKDVLNEIERNLQDAMAVARN 396 (525)
T ss_pred HHHHHHhCCeEecchhhCCHhhcCCcCCEEEEEEECCeEEEEEEcCCCCCEEEEEEEcCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCceeccCCccHHHHHHHHHHHhhhccchHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHhccCCCC-CCCc
Q 008527 402 ATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTG-EGAP 480 (562)
Q Consensus 402 ~l~~~~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~-~~~~ 480 (562)
+++++++|||||++|++++.+|++++...++++++++++|++||+.||++|++|||+|+.+++.+|+..|.. + + .+
T Consensus 397 ~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~--~~~-~~ 473 (525)
T TIGR02344 397 VLLEPKLLPGGGATEMAVSVYLAKKASKLEGVQQWPYRAVADALEIIPRTLAQNCGVNVIRTLTELRAKHAQ--EGN-CT 473 (525)
T ss_pred HHhCCCcccCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc--cCC-Ce
Confidence 999999999999999999999999988889999999999999999999999999999999999999999976 4 4 78
Q ss_pred eeEecCCCCccccccCCcccchHHHHHHHHHHHHHHHHHHchhHhhcCCC
Q 008527 481 YGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPK 530 (562)
Q Consensus 481 ~Gid~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~iI~~~~ 530 (562)
+|+|+.+|+++||++.|||||+.+|+++|+.|+|+|++|||||++|...|
T Consensus 474 ~Gid~~~g~~~d~~~~gV~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~~ 523 (525)
T TIGR02344 474 WGIDGETGKIVDMKEKGIWEPLAVKLQTYKTAIESACMLLRIDDIVSGVK 523 (525)
T ss_pred EeEECCCCccccchhccceecHHHHHHHHHHHHHHHHHHHhhhHHhhcCC
Confidence 99999999999999999999999999999999999999999999998765
No 8
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=3.5e-105 Score=869.64 Aligned_cols=511 Identities=36% Similarity=0.575 Sum_probs=487.3
Q ss_pred ccccccccccHHHHHHHHHHHHHHHHHhhhccCCCCCceeeeCC--CCCeEEecCHHHHhccccccChHHHHHHHHHHhc
Q 008527 12 LKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDD--KGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQ 89 (562)
Q Consensus 12 ~~~~~~~~~g~~~~~~n~~~~~~l~~iv~sslGP~G~~kmI~~~--~g~~~iTnDG~tIl~~l~~~hP~akll~~~~~~~ 89 (562)
++++.+...|.++++.|+.||..++++++|||||+||+|||+++ .|+++|||||+||+++|+++||+++|++++|++|
T Consensus 2 ~~~~~~~~~~~~a~~~n~~~~~~i~~~v~tslGP~G~~Kmi~~~~~~g~~~iTnDG~tIlk~l~~~hP~akll~~~a~~q 81 (517)
T cd03336 2 LKDGAQEEKGETARLSSFVGAIAIGDLVKTTLGPKGMDKILQSVGRSGGVTVTNDGATILKSIGVDNPAAKVLVDISKVQ 81 (517)
T ss_pred CCCccccccHHHHHHHHHHHHHHHHHHHhcCCCCCcCceEeecCCCCCCeEEeccHHHHHHHccCcChHHHHHHHHHHHH
Confidence 35566788999999999999999999999999999999999998 5999999999999999999999999999999999
Q ss_pred ccccCCchhHHHHHHHHHHHHHHHhHHCCCChhhHHHHHHHHHHHHHHHHHhhceeccCCChHHHHHHHHHHHHHhhccC
Q 008527 90 DSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSK 169 (562)
Q Consensus 90 ~~~~GDGTtt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~v~~~~~~~~~~~l~~ia~tsl~sk 169 (562)
++++||||||+|+|+++||+++.+++++|+||+.|++||+.|.+.+++.|+++++|++..+ .++++.|.++|+|+++||
T Consensus 82 d~~~GDGTTtvvvLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~-~~~~~~l~~ia~t~lssk 160 (517)
T cd03336 82 DDEVGDGTTSVTVLAAELLREAEKLVAQKIHPQTIIEGYRMATAAAREALLSSAVDHSSDE-EAFREDLLNIARTTLSSK 160 (517)
T ss_pred HhHhCCChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCccccc-chhHHHHHHHHHhhcccc
Confidence 9999999999999999999999999999999999999999999999999999999885321 123678999999999999
Q ss_pred ccCchhHHHHHHHHHHHHHhCCCCCCcceeEEEecCCCcccceeEEEEEEecccCCCcccCCcceecCceEEEeeccccc
Q 008527 170 LIGGEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNIELEL 249 (562)
Q Consensus 170 ~~~~~~~~ls~li~~Av~~v~~~~d~~~I~i~~i~gg~~~ds~li~Giv~~~~~~~~~~~~~~~~l~n~kIll~~~~Le~ 249 (562)
+.++++++|++++++|+..+++..|.++|++++++|++++||++++|+++++++.+ .||++++||+|++++++||+
T Consensus 161 ~~~~~~~~l~~l~~~A~~~v~~~~~~~~i~i~ki~G~s~~ds~l~~G~v~~~~~~~----~~~~~~~n~kIli~~~~le~ 236 (517)
T cd03336 161 ILTQDKEHFAELAVDAVLRLKGSGNLDAIQIIKKLGGSLKDSYLDEGFLLDKKIGV----NQPKRIENAKILIANTPMDT 236 (517)
T ss_pred ccchhHHHHHHHHHHHHHHhhccCCccceeEEEccCCCccceEEEeeEEEecccCC----CCCCeeccccEEEEecCCCc
Confidence 99999999999999999999754478899999999999999999999999999764 25899999999999999999
Q ss_pred ccccc-CceEEecCHHhHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcccHHHHHHHHhcCccccCCCChHHHHHHHHH
Q 008527 250 KSEKE-NAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAAA 328 (562)
Q Consensus 250 ~~~~~-~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lIi~~~~v~~~al~~l~~~~I~~v~~v~~~~Le~Ia~~ 328 (562)
++++. ++++.+++++++..+.+.|++++++++++|++.++++++++++|++.+++||.++||++++++++++|+|||++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~l~~~E~~~~~~~v~~I~~~gv~~v~~~~~I~~~~~~~l~~~~I~av~~v~~~~L~rIa~~ 316 (517)
T cd03336 237 DKIKIFGAKVRVDSTAKVAEIEEAEKEKMKNKVEKILKHGINCFINRQLIYNYPEQLFADAGIMAIEHADFDGVERLALV 316 (517)
T ss_pred ccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCccHHHHHHHHHCCcEEEecCCHHHHHHHHHH
Confidence 99987 88999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCeEecccCCCCCCcccccceEEEEEECCeEEEEEEcCCCCceEEEEeecCCHHHHHHHHHHHHHHHHHHHHHHhCCce
Q 008527 329 TGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTV 408 (562)
Q Consensus 329 TGa~ii~sl~~l~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~~~~TIll~G~t~~~l~e~k~~i~dal~~~~~~l~~~~v 408 (562)
|||++++++++++++++|+|+.|++..+|+++|++|+||++++.|||+|||+|+.+++|.+|+++||++++++++++|++
T Consensus 317 tGa~ii~~l~~~~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~er~i~Dal~~~~~~i~~~~v 396 (517)
T cd03336 317 TGGEIASTFDHPELVKLGTCKLIEEIMIGEDKLIRFSGVAAGEACTIVLRGASQQILDEAERSLHDALCVLAQTVKDTRV 396 (517)
T ss_pred hCCEEecccCCCCcccccccceEEEEEECCeEEEEEEccCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhCCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCccHHHHHHHHHHHhhhccchHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHhccCCCCCCCceeEecCCC
Q 008527 409 VAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTG 488 (562)
Q Consensus 409 vpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~~~~Gid~~~g 488 (562)
|||||++|++++++|++++.+.++++++++++|++||+.||++|++|||+|+.+++.+|+..|.. ++ .++|+|+.+|
T Consensus 397 vpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~~a~ALe~ip~~La~NaG~d~~~~l~~l~~~h~~--~~-~~~Gid~~~g 473 (517)
T cd03336 397 VLGGGCSEMLMAKAVEELAKKTPGKKSLAIEAFAKALRQLPTIIADNAGYDSAELVAQLRAAHYN--GN-TTAGLDMRKG 473 (517)
T ss_pred EeCCCHHHHHHHHHHHHHhhhCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--CC-CceeeecCCC
Confidence 99999999999999999988889999999999999999999999999999999999999999976 66 7899999999
Q ss_pred CccccccCCcccchHHHHHHHHHHHHHHHHHHchhHhhcCCC
Q 008527 489 GIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPK 530 (562)
Q Consensus 489 ~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~iI~~~~ 530 (562)
+++||++.|||||+.+|+++|+.|+|+|++|||||++|..+|
T Consensus 474 ~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~~ 515 (517)
T cd03336 474 TVGDMKELGITESFKVKRQVLLSASEAAEMILRVDDIIKCAP 515 (517)
T ss_pred CccchhhcCceecHHHHHHHHHHHHHHHHHHHhHhHHhhcCC
Confidence 999999999999999999999999999999999999999876
No 9
>cd03343 cpn60 cpn60 chaperonin family. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=1.6e-105 Score=875.16 Aligned_cols=508 Identities=41% Similarity=0.672 Sum_probs=489.3
Q ss_pred hccccccccccHHHHHHHHHHHHHHHHHhhhccCCCCCceeeeCCCCCeEEecCHHHHhccccccChHHHHHHHHHHhcc
Q 008527 11 LLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQD 90 (562)
Q Consensus 11 ~~~~~~~~~~g~~~~~~n~~~~~~l~~iv~sslGP~G~~kmI~~~~g~~~iTnDG~tIl~~l~~~hP~akll~~~~~~~~ 90 (562)
+++++.+..+|.+++.+|++||..+++++++||||+|++|||+++.|+++|||||+||+++|+++||+++|+++++++|+
T Consensus 3 ~~~~~~~~~~~~~~~~~n~~~~~~i~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~q~ 82 (517)
T cd03343 3 ILKEGTQRTSGRDAQRMNIAAAKAVAEAVRTTLGPKGMDKMLVDSLGDVTITNDGATILKEMDIEHPAAKMLVEVAKTQD 82 (517)
T ss_pred ccCCCcccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCCceeEcCCCCEEEEccHHHHHHHccCcCHHHHHHHHHHHHHH
Confidence 45777788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCchhHHHHHHHHHHHHHHHhHHCCCChhhHHHHHHHHHHHHHHHHHhhceeccCCChHHHHHHHHHHHHHhhccCc
Q 008527 91 SEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKL 170 (562)
Q Consensus 91 ~~~GDGTtt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~v~~~~~~~~~~~l~~ia~tsl~sk~ 170 (562)
+++||||||+++|+++|++++.+++++|+||..|++||++|++.+++.|++++++++..+ ++.+.++|+|+++||+
T Consensus 83 ~~~GDGTtt~viLa~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~----~~~l~~va~ts~~sk~ 158 (517)
T cd03343 83 EEVGDGTTTAVVLAGELLEKAEDLLDQNIHPTVIIEGYRLAAEKALELLDEIAIKVDPDD----KDTLRKIAKTSLTGKG 158 (517)
T ss_pred HHhCCChhHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhhcccCCCC----HHHHHHHHHHhhcccc
Confidence 999999999999999999999999999999999999999999999999999999987544 6899999999999999
Q ss_pred cCchhHHHHHHHHHHHHHhCCC-----C-CCcceeEEEecCCCcccceeEEEEEEecccCCCcccCCcceecCceEEEee
Q 008527 171 IGGEKEFFASMVVDAVGAIGDG-----D-RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLN 244 (562)
Q Consensus 171 ~~~~~~~ls~li~~Av~~v~~~-----~-d~~~I~i~~i~gg~~~ds~li~Giv~~~~~~~~~~~~~~~~l~n~kIll~~ 244 (562)
.+.+.+.|++++++|+.+++++ . |.++|+|++++|++++||++++|++|+++|.+++| |++++||||++++
T Consensus 159 ~~~~~~~l~~l~~~A~~~v~~~~~~~~~~~~~~I~i~k~~Ggs~~ds~lv~G~v~~~~~~~~~m---~~~~~n~~Illl~ 235 (517)
T cd03343 159 AEAAKDKLADLVVDAVLQVAEKRDGKYVVDLDNIKIEKKTGGSVDDTELIRGIVIDKEVVHPGM---PKRVENAKIALLD 235 (517)
T ss_pred hhhHHHHHHHHHHHHHHHhhhccCCCccccHHHeeEEeecCcCHHHcceeeeEEEeccCCCCCC---ccccCCCcEEEEe
Confidence 9999999999999999998753 2 67789999999999999999999999999999875 7899999999999
Q ss_pred ccccccccccCceEEecCHHhHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcccHHHHHHHHhcCccccCCCChHHHHH
Q 008527 245 IELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLR 324 (562)
Q Consensus 245 ~~Le~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lIi~~~~v~~~al~~l~~~~I~~v~~v~~~~Le~ 324 (562)
++||+++++.++++.+++.+++.++.+.|+++++++++++++.|++||+++++|++.+++||.++||++++++++++|+|
T Consensus 236 ~~Le~~k~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~l~~~gI~~v~~v~~~~l~~ 315 (517)
T cd03343 236 APLEVKKTEIDAKIRITSPDQLQAFLEQEEAMLKEMVDKIADTGANVVFCQKGIDDLAQHYLAKAGILAVRRVKKSDMEK 315 (517)
T ss_pred ccccCCccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCccHHHHHHHhHCCcEEEEeCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCeEecccCCCCCCcccccceEEEEEECCeEEEEEEcCCCCceEEEEeecCCHHHHHHHHHHHHHHHHHHHHHHh
Q 008527 325 VAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATK 404 (562)
Q Consensus 325 Ia~~TGa~ii~sl~~l~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~~~~TIll~G~t~~~l~e~k~~i~dal~~~~~~l~ 404 (562)
||++|||++++++++++++++|+|+.|++.++|+++|++|+||.+++.+||+|||+|+.+++|++|+++||+++++++++
T Consensus 316 Ia~~tGa~ii~~~~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~~~~TI~lrG~t~~~l~e~~~~l~Dal~~~~~~~~ 395 (517)
T cd03343 316 LARATGAKIVTNIDDLTPEDLGEAELVEERKVGDDKMVFVEGCKNPKAVTILLRGGTEHVVDELERALEDALRVVADALE 395 (517)
T ss_pred HHHHhCCEEecchhhCChhhCCccceEEEEEECCeEEEEEEcCCCCceEEEEEECCcHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeccCCccHHHHHHHHHHHhhhccchHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHhccCCCCCCCceeEe
Q 008527 405 NSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVD 484 (562)
Q Consensus 405 ~~~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~~~~Gid 484 (562)
+|++|||||++|++++.+|++++...++++++++++|++||+.||++|++|||+|+.+++.+|++.|.. ++ .++|+|
T Consensus 396 ~~~vvpGGG~~e~~ls~~L~~~~~~~~~~~~~~~~~~~~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~--~~-~~~G~d 472 (517)
T cd03343 396 DGKVVAGGGAVEIELAKRLREYARSVGGREQLAVEAFADALEEIPRTLAENAGLDPIDTLVELRAAHEK--GN-KNAGLD 472 (517)
T ss_pred CCCeeeCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc--cC-Cceeee
Confidence 999999999999999999999988889999999999999999999999999999999999999998865 55 789999
Q ss_pred cCCCCccccccCCcccchHHHHHHHHHHHHHHHHHHchhHhhcC
Q 008527 485 INTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKN 528 (562)
Q Consensus 485 ~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~iI~~ 528 (562)
+.+|++.||++.|||||+.+|+++|+.|+|+|++|||||++|+.
T Consensus 473 ~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~ 516 (517)
T cd03343 473 VYTGEVVDMLEKGVIEPLRVKKQAIKSATEAATMILRIDDVIAA 516 (517)
T ss_pred cCCCCccchhhcCceecHHHHHHHHHHHHHHHHHHHhhhHhhhC
Confidence 99999999999999999999999999999999999999999965
No 10
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=4.1e-105 Score=871.66 Aligned_cols=513 Identities=31% Similarity=0.534 Sum_probs=486.3
Q ss_pred hHhhcccc--ccccccHHHHHHHHHHHHHHHHHhhhccCCCCCceeeeCCCCCeEEecCHHHHhccccccChHHHHHHHH
Q 008527 8 QIILLKEG--TDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDI 85 (562)
Q Consensus 8 ~~~~~~~~--~~~~~g~~~~~~n~~~~~~l~~iv~sslGP~G~~kmI~~~~g~~~iTnDG~tIl~~l~~~hP~akll~~~ 85 (562)
|..+++++ .+..+|.+++++|++||..++++++|||||+||+|||+++.|+++|||||+||+++|+++||+++|++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~ni~~~~~i~~~v~tslGP~G~~kmi~~~~G~~~iTnDG~tIlk~l~~~hP~akll~~~ 85 (526)
T cd03339 6 PFIIVREQEKKKRLKGLEAHKSHILAAKSVANILRTSLGPRGMDKILVSPDGEVTVTNDGATILEKMDVDHQIAKLLVEL 85 (526)
T ss_pred CeEEecCCCccccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCcEEEECCCCCEEEeCcHHHHHHHhcccCHHHHHHHHH
Confidence 33456666 3688999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcccccCCchhHHHHHHHHHHHHHHHhHHCCCChhhHHHHHHHHHHHHHHHHHhhceeccCCChHHHHHHHHHHHHHh
Q 008527 86 AKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATT 165 (562)
Q Consensus 86 ~~~~~~~~GDGTtt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~v~~~~~~~~~~~l~~ia~ts 165 (562)
+++|++++||||||+++|+++||+++.+++++|+||..|++||+.|++.+++.|+++++|++... .+.+.|.++|+|+
T Consensus 86 a~~q~~~~GDGTtt~viLa~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~--~~~~~l~~ia~ts 163 (526)
T cd03339 86 SKSQDDEIGDGTTGVVVLAGALLEQAEKLLDRGIHPIRIADGYEQACKIAVEHLEEIADKIEFSP--DNKEPLIQTAMTS 163 (526)
T ss_pred HHhhhhhhcCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCc--ccHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999886421 2367899999999
Q ss_pred hccCccCchhHHHHHHHHHHHHHhCCC---C-CCcceeEEEecCCCcccceeEEEEEEecccCCCcccCCcceecCceEE
Q 008527 166 LSSKLIGGEKEFFASMVVDAVGAIGDG---D-RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKIL 241 (562)
Q Consensus 166 l~sk~~~~~~~~ls~li~~Av~~v~~~---~-d~~~I~i~~i~gg~~~ds~li~Giv~~~~~~~~~~~~~~~~l~n~kIl 241 (562)
+++|+.+.+.+.|++++++|+..+.+. + |.+.|+++++.||+++||++++|++|++++.+++| |+.++||||+
T Consensus 164 l~sk~~~~~~~~~s~i~v~av~~i~~~~~~~~d~~~I~i~ki~Ggs~~dS~~v~Givi~~~~~~~~m---~~~~~n~kI~ 240 (526)
T cd03339 164 LGSKIVSRCHRQFAEIAVDAVLSVADLERKDVNFELIKVEGKVGGRLEDTKLVKGIVIDKDFSHPQM---PKEVKDAKIA 240 (526)
T ss_pred hcccchhhHHHHHHHHHHHHHHHHhhcCCCccchHHeEEEEecCcCHHHcceeeeEEEecccCCCCC---CceecCCCEE
Confidence 999998889999999999999988642 2 67899999999999999999999999999999874 7899999999
Q ss_pred EeeccccccccccCceEEecCHHhHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcccHHHHHHHHhcCccccCCCChHH
Q 008527 242 LLNIELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEED 321 (562)
Q Consensus 242 l~~~~Le~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lIi~~~~v~~~al~~l~~~~I~~v~~v~~~~ 321 (562)
+++++||+++++++.++.++++++++++.+.|+++++++++++++.|++||+++++|++.+++||.++||++++++++++
T Consensus 241 ll~~~le~~~~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~L~~~~I~av~~v~~~~ 320 (526)
T cd03339 241 ILTCPFEPPKPKTKHKLDITSVEDYKKLQEYEQKYFREMVEQVKDAGANLVICQWGFDDEANHLLLQNGLPAVRWVGGVE 320 (526)
T ss_pred EEEecccCCccccceEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHCCCEEEEeCCHHH
Confidence 99999999999989999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCeEecccCCCCCCcccccceEEEEEECC--eEEEEEEcCCCCceEEEEeecCCHHHHHHHHHHHHHHHHHH
Q 008527 322 LLRVAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGN--ERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIV 399 (562)
Q Consensus 322 Le~Ia~~TGa~ii~sl~~l~~~~lG~~~~v~~~~ig~--~~~~~~~g~~~~~~~TIll~G~t~~~l~e~k~~i~dal~~~ 399 (562)
|+|||++|||+++++++++++..+|+|+.|++.++|. ++|++|+||++++.+||+|||+|+.+++|+||+++||++++
T Consensus 321 LerIa~~tGa~ii~~l~~l~~~~LG~~~~v~~~~ig~~~~~~~~i~g~~~~~~~TIllrG~t~~~l~E~er~l~DAl~~~ 400 (526)
T cd03339 321 IELIAIATGGRIVPRFEDLSPEKLGKAGLVREISFGTTKDKMLVIEGCPNSKAVTIFIRGGNKMIIEEAKRSLHDALCVV 400 (526)
T ss_pred HHHHHHHhCCEEecchhhCChhhcccCceEEEEEecCCCcEEEEEECCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999985 68999999999999999999999999999999999999999
Q ss_pred HHHHhCCceeccCCccHHHHHHHHHHHhhhccchHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHhccCCCCCCC
Q 008527 400 RRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGA 479 (562)
Q Consensus 400 ~~~l~~~~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~~ 479 (562)
++++++|++|||||++|++++++|++++...++++++++++|++||+.||++|++|||+|+.+++.+|+..|.++ ++ .
T Consensus 401 ~~~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~h~~~-~~-~ 478 (526)
T cd03339 401 RNLIRDNRIVYGGGAAEISCSLAVEKAADKCSGIEQYAMRAFADALESIPLALAENSGLNPIETLSEVKARQVKE-KN-P 478 (526)
T ss_pred HHHhhCCCEEeCCCHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhc-CC-C
Confidence 999999999999999999999999999888889999999999999999999999999999999999999999651 34 6
Q ss_pred ceeEecCCCCccccccCCcccchHHHHHHHHHHHHHHHHHHchhHhhc
Q 008527 480 PYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVK 527 (562)
Q Consensus 480 ~~Gid~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~iI~ 527 (562)
++|+|+.+|+++||++.|||||+.+|+++|+.|+|+|++|||||++|.
T Consensus 479 ~~Gid~~~g~~~d~~~~gV~dp~~vk~~~l~~A~e~a~~iL~iD~ii~ 526 (526)
T cd03339 479 HLGIDCLGRGTNDMKEQKVFETLISKKQQILLATQVVKMILKIDDVIV 526 (526)
T ss_pred eEeeecCCCccCchhhcCceecHHHHHHHHHHHHHHHHHHhhhceecC
Confidence 899999999999999999999999999999999999999999999873
No 11
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1e-104 Score=868.72 Aligned_cols=504 Identities=39% Similarity=0.629 Sum_probs=479.9
Q ss_pred ccccHHHHHHHHHHHHHHHHHhhhccCCCCCceeeeCCCCCeEEecCHHHHhccccccChHHHHHHHHHHhcccccCCch
Q 008527 18 TSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGT 97 (562)
Q Consensus 18 ~~~g~~~~~~n~~~~~~l~~iv~sslGP~G~~kmI~~~~g~~~iTnDG~tIl~~l~~~hP~akll~~~~~~~~~~~GDGT 97 (562)
...|.++++.|++||..++++++|||||+||+|||+++.|+++|||||+||+++|+++||+++|++++|++|++++||||
T Consensus 3 ~~~~~~~~~~ni~a~~~l~~~v~tslGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hP~akll~~~a~~q~~~~GDGT 82 (527)
T cd03335 3 RTSGQDVRTQNVTAAMAIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKILVELAQLQDKEVGDGT 82 (527)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhcCcCCCcCceEEEcCCCCEEEeCcHHHHHHhccccChHHHHHHHHHHHHHHHhCCCc
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhHHCCCChhhHHHHHHHHHHHHHHHHHh-hceeccCCChHHHHHHHHHHHHHhhccCccCchhH
Q 008527 98 TTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKE-LAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKE 176 (562)
Q Consensus 98 tt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~l~~L~~-~s~~v~~~~~~~~~~~l~~ia~tsl~sk~~~~~~~ 176 (562)
||+++|+++||+++.+++++|+||+.|++||+.|++.+++.|++ +++|++..+ ++.|.++|+|+++||+++.+.+
T Consensus 83 Tt~vvLa~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~----~~~l~~ia~tsl~sK~~~~~~~ 158 (527)
T cd03335 83 TSVVIIAAELLKRANELVKQKIHPTTIISGYRLACKEAVKYIKEHLSISVDNLG----KESLINVAKTSMSSKIIGADSD 158 (527)
T ss_pred chHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCccC----HHHHHHHHHHHhcccccchhHH
Confidence 99999999999999999999999999999999999999999996 899986444 6789999999999999988889
Q ss_pred HHHHHHHHHHHHhCC--C----C-CCcceeEEEecCCCcccceeEEEEEEecccCCCcccCCcceecCceEEEeeccccc
Q 008527 177 FFASMVVDAVGAIGD--G----D-RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNIELEL 249 (562)
Q Consensus 177 ~ls~li~~Av~~v~~--~----~-d~~~I~i~~i~gg~~~ds~li~Giv~~~~~~~~~~~~~~~~l~n~kIll~~~~Le~ 249 (562)
+|++++++|+..++. . . |.++|+++++.|+++++|++++|++|++++.++. ||++++||+|++++++|++
T Consensus 159 ~ls~l~~~A~~~v~~~~~~~~~~~~~~~I~i~~~~Ggs~~~s~li~Givi~~~~~~~~---m~~~i~n~kIlll~~~Le~ 235 (527)
T cd03335 159 FFANMVVDAILAVKTTNEKGKTKYPIKAVNILKAHGKSAKESYLVNGYALNCTRASQG---MPTRVKNAKIACLDFNLQK 235 (527)
T ss_pred HHHHHHHHHHHHhhcccccCCCccCHHHeEEEEecCcChhhcceeeeEEEecccCCCC---CcccccCCcEEEEeccCCC
Confidence 999999999999852 1 1 6788999999999999999999999999999874 6899999999999999999
Q ss_pred cccccCceEEecCHHhHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcccHHHHHHHHhcCccccCCCChHHHHHHHHHh
Q 008527 250 KSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAAAT 329 (562)
Q Consensus 250 ~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lIi~~~~v~~~al~~l~~~~I~~v~~v~~~~Le~Ia~~T 329 (562)
.+++.++++.++++++++.+.+.|++++++++++|++.|++||+++++|++.+++||.++||++++++++++|+|||++|
T Consensus 236 ~~~~~~~~~~~~~~~~le~~~~~E~~~l~~~i~~i~~~g~~lvi~~k~I~d~al~~L~~~~I~~v~~v~~~~lerIa~~t 315 (527)
T cd03335 236 TKMKLGVQVVVTDPEKLEKIRQRESDITKERIKKILAAGANVVLTTGGIDDMCLKYFVEAGAMAVRRVKKEDLRRIAKAT 315 (527)
T ss_pred CccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHCCcEEEEeCCHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEecccCCC------CCCcccccceEEEEEECCeEEEEEEcCCCCceEEEEeecCCHHHHHHHHHHHHHHHHHHHHHH
Q 008527 330 GGTVQTSVNNV------VDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRAT 403 (562)
Q Consensus 330 Ga~ii~sl~~l------~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~~~~TIll~G~t~~~l~e~k~~i~dal~~~~~~l 403 (562)
||+++++++++ +++++|+|++|++.++++++|++|+|+++++.|||+|||+|+.+++|++|+++||++++++++
T Consensus 316 Ga~ii~~~~~l~~~~~~~~~~LG~~~~v~~~~ig~~~~~~i~g~~~~~~~TIllrG~t~~~l~e~er~i~Dal~~~~~~~ 395 (527)
T cd03335 316 GATLVSTLANLEGEETFDPSYLGEAEEVVQERIGDDELILIKGTKKRSSASIILRGANDFMLDEMERSLHDALCVVKRTL 395 (527)
T ss_pred CCEEecChhhcCcccccCHhhCccCceEEEEEECCeEEEEEEcCCCCCEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999998665 334799999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCceeccCCccHHHHHHHHHHHhhhccchHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHhccCCCCC------
Q 008527 404 KNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGE------ 477 (562)
Q Consensus 404 ~~~~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~------ 477 (562)
++|++|||||++|++++.+|++++...++++++++++||+||+.||++|++|||+|+.+++.+|+..|.+ +.
T Consensus 396 ~~~~vvpGGGa~e~~ls~~L~~~~~~~~~~~~~~i~~~a~aL~~ip~~La~NaG~d~~~~~~~l~~~h~~--~~~~~~~~ 473 (527)
T cd03335 396 ESNSVVPGGGAVETALSIYLENFATTLGSREQLAIAEFAEALLVIPKTLAVNAAKDATELVAKLRAYHAA--AQVKPDKK 473 (527)
T ss_pred hCCCEeeCCCHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh--cCCccccc
Confidence 9999999999999999999999988889999999999999999999999999999999999999999876 31
Q ss_pred -CCceeEecCCCCccccccCCcccchHHHHHHHHHHHHHHHHHHchhHhhcCCC
Q 008527 478 -GAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPK 530 (562)
Q Consensus 478 -~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~iI~~~~ 530 (562)
++++|+|+.+|+++||++.|||||+.+|.++|+.|+|+|++|||||++|...|
T Consensus 474 ~~~~~Gid~~~g~~~d~~~~gV~dp~~~k~~~i~~A~e~a~~iLrID~ii~~~~ 527 (527)
T cd03335 474 HLKWYGLDLINGKVRDNLEAGVLEPTVSKIKSLKFATEAAITILRIDDLIKLNP 527 (527)
T ss_pred cCceEeEECCCCcccchhhccceecHHHHHHHHHHHHHHHHHHHhhcceeecCC
Confidence 26799999999999999999999999999999999999999999999998754
No 12
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.4e-104 Score=866.05 Aligned_cols=516 Identities=32% Similarity=0.540 Sum_probs=488.6
Q ss_pred chhHhhccc--cccccccHHHHHHHHHHHHHHHHHhhhccCCCCCceeeeCCCCCeEEecCHHHHhccccccChHHHHHH
Q 008527 6 QPQIILLKE--GTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILV 83 (562)
Q Consensus 6 ~~~~~~~~~--~~~~~~g~~~~~~n~~~~~~l~~iv~sslGP~G~~kmI~~~~g~~~iTnDG~tIl~~l~~~hP~akll~ 83 (562)
++|..++++ +.+...|.+++..|++||..++++++|||||+||+|||+++.|+++|||||+||+++|+++||+++|++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~a~~~ni~a~~~i~~~vkttlGP~G~~KmI~~~~G~~~ITnDG~tIlk~l~~~hP~akll~ 87 (532)
T TIGR02343 8 GRPFIIIKDQDKKKRLKGLEAIKSNIAAAKSVASILRTSLGPKGMDKMLQSPDGDITVTNDGATILSQMDVDNPIAKLMV 87 (532)
T ss_pred CCCchhhccccccccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEEcCCCCEEEeCcHHHHHHHccCCCHHHHHHH
Confidence 335456677 467899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcccccCCchhHHHHHHHHHHHHHHHhHHCCCChhhHHHHHHHHHHHHHHHHHhhceeccCCChHHHHHHHHHHHH
Q 008527 84 DIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAA 163 (562)
Q Consensus 84 ~~~~~~~~~~GDGTtt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~v~~~~~~~~~~~l~~ia~ 163 (562)
++|++|++++||||||+++|+++||+++.+++++|+||+.|++||+.|++.+++.|++++++++... .+++.|.++|+
T Consensus 88 ~~a~~qd~~~GDGTttvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~--~~~~~l~~ia~ 165 (532)
T TIGR02343 88 ELSKSQDDEIGDGTTGVVVLAGALLEQAEALLDKGIHPIKIAEGFEVAARVAVEHLEEISEEISDDN--NNKEPLIQAAK 165 (532)
T ss_pred HHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccccCcCC--CCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999875321 23678999999
Q ss_pred HhhccCccCchhHHHHHHHHHHHHHhCCC---C-CCcceeEEEecCCCcccceeEEEEEEecccCCCcccCCcceecCce
Q 008527 164 TTLSSKLIGGEKEFFASMVVDAVGAIGDG---D-RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPK 239 (562)
Q Consensus 164 tsl~sk~~~~~~~~ls~li~~Av~~v~~~---~-d~~~I~i~~i~gg~~~ds~li~Giv~~~~~~~~~~~~~~~~l~n~k 239 (562)
|++++|+.+.+.+.|++++++|+..+.+. + |.++|+++++.||+++||++++|++|++++.+++ ||+.++|||
T Consensus 166 t~l~sK~~~~~~~~ls~i~~~av~~i~~~~~~~~d~~~I~i~ki~Ggs~~ds~~v~Gi~i~~~~~~~~---m~~~~~n~k 242 (532)
T TIGR02343 166 TSLGSKIVSKCHRRFAEIAVDAVLMVADMERRDVDFDLIKVEGKVGGSLEDTKLIKGIIIDKDFSHPQ---MPKEVKDAK 242 (532)
T ss_pred HhhccchhhHHHHHHHHHHHHHHHhhhhcCCCcCCHHHeeEEEecCCCcccceeEeeEEEecCcCCCC---CCeeecCCc
Confidence 99999998888999999999999988542 2 7899999999999999999999999999999987 489999999
Q ss_pred EEEeeccccccccccCceEEecCHHhHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcccHHHHHHHHhcCccccCCCCh
Q 008527 240 ILLLNIELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAE 319 (562)
Q Consensus 240 Ill~~~~Le~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lIi~~~~v~~~al~~l~~~~I~~v~~v~~ 319 (562)
|++++++||+++++.+.++.+++++++.++.+.|+++++++++++++.|++||+++++|++.+++||.++||++++++++
T Consensus 243 I~l~~~~le~~~~~~~~~~~i~~~~~~~~~~~~E~~~l~~~l~~i~~~g~~lvi~~~~I~~~al~~L~~~~i~~v~~~~~ 322 (532)
T TIGR02343 243 IAILTCPFEPPKPKTKHKLDISSVEEYKKLQKYEQQKFAEMIDDIKKSGANIVICQWGFDDEANHLLLQNDLPAVRWVGG 322 (532)
T ss_pred EEEEEeeccccccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCccHHHHHHHHHCCcEEEEcCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCeEecccCCCCCCcccccceEEEEEECC--eEEEEEEcCCCCceEEEEeecCCHHHHHHHHHHHHHHHH
Q 008527 320 EDLLRVAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGN--ERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIM 397 (562)
Q Consensus 320 ~~Le~Ia~~TGa~ii~sl~~l~~~~lG~~~~v~~~~ig~--~~~~~~~g~~~~~~~TIll~G~t~~~l~e~k~~i~dal~ 397 (562)
++|+|||++|||++++++++++++.+|+|+.+++.++|+ ++|++|+||++++.+||+|||+|+.+++|.||+++||++
T Consensus 323 ~~l~~Ia~~tGa~~i~~l~~~~~~~LG~a~~v~~~~ig~~~~~~~~i~~~~~~~~~TIllrG~t~~~l~E~er~l~DAl~ 402 (532)
T TIGR02343 323 HELELIAIATGGRIVPRFEELSEDKLGKAGLVREISFGTTKDRMLVIEQCKNSKAVTIFIRGGNKMIIEEAKRSIHDALC 402 (532)
T ss_pred HHHHHHHHHhCCEEecccccCCHhHCcccceEEEEEecCCcceEEEEECCCCCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999987 489999999999999999999999999999999999999
Q ss_pred HHHHHHhCCceeccCCccHHHHHHHHHHHhhhccchHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHhccCCCCC
Q 008527 398 IVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGE 477 (562)
Q Consensus 398 ~~~~~l~~~~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~ 477 (562)
+++++++++++|||||++|++++++|++++...++++++++++|++||+.||++|++|||+|+.+++.+|++.|... ++
T Consensus 403 ~v~~~i~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~fa~ALe~ip~~La~NaG~d~~~~l~~l~~~h~~~-~~ 481 (532)
T TIGR02343 403 VVRNLIKNSRIVYGGGAAEISCSLAVSQEADKYSGVEQYAIRAFADALEEIPMALAENSGLDPIGTLSDLKSLQMKE-KN 481 (532)
T ss_pred HHHHHHhCCCEEeCcCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhc-CC
Confidence 99999999999999999999999999999888899999999999999999999999999999999999999988651 24
Q ss_pred CCceeEecCCCCccccccCCcccchHHHHHHHHHHHHHHHHHHchhHhhcC
Q 008527 478 GAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKN 528 (562)
Q Consensus 478 ~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~iI~~ 528 (562)
.++|+|+.+|+++||++.|||||+.+|+++|+.|+|+|++|||||++|..
T Consensus 482 -~~~Gid~~~g~i~d~~~~gV~Dp~~vk~~al~~A~e~a~~iL~id~ii~~ 531 (532)
T TIGR02343 482 -PHLGVDCLGDGTNDMKEQGVFETLIGKKQQIQLATQLVRMILKIDDVISP 531 (532)
T ss_pred -CccCeeCCCCccccchhccCeecHHHHHHHHHHHHHHHHHHHhHhhhccC
Confidence 68999999999999999999999999999999999999999999999964
No 13
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=2.2e-103 Score=854.30 Aligned_cols=513 Identities=35% Similarity=0.558 Sum_probs=486.9
Q ss_pred hccccccccccHHHHHHHHHHHHHHHHHhhhccCCCCCceeeeCCC--CCeEEecCHHHHhccccccChHHHHHHHHHHh
Q 008527 11 LLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDK--GTVTISNDGATIMKLLDIVHPAAKILVDIAKS 88 (562)
Q Consensus 11 ~~~~~~~~~~g~~~~~~n~~~~~~l~~iv~sslGP~G~~kmI~~~~--g~~~iTnDG~tIl~~l~~~hP~akll~~~~~~ 88 (562)
+++++.+..+|.+++.+|+.|+..++++++|||||+||+|||+++. |+++|||||+|||++|+++||+++|++++|++
T Consensus 2 ~~~~~~~~~~~~~a~~~ni~a~~~i~~~vkttlGP~G~~KmI~~~~~~G~~~iTnDG~tIlk~l~i~hP~akll~~~a~~ 81 (519)
T TIGR02341 2 IFKDNAQEERGENARLSSFVGAIAIGDLVKSTLGPKGMDKILQSGSSESGIMVTNDGATILKSIGVDNPAAKVLVDMSKV 81 (519)
T ss_pred CccCCCccccHHHHHHHHHHHHHHHHHHHhcCCCCCcCceEEeccCCCCCeEEeccHHHHHHHccCcChHHHHHHHHHHH
Confidence 3456667889999999999999999999999999999999999985 99999999999999999999999999999999
Q ss_pred cccccCCchhHHHHHHHHHHHHHHHhHHCCCChhhHHHHHHHHHHHHHHHHHhhceeccCCChHHHHHHHHHHHHHhhcc
Q 008527 89 QDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSS 168 (562)
Q Consensus 89 ~~~~~GDGTtt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~v~~~~~~~~~~~l~~ia~tsl~s 168 (562)
|++++||||||+|+|+++||+++.+++++|+||+.|++||+.|++.+++.|+++++|++... ..+++.|.++++|++++
T Consensus 82 qd~~~GDGTTtvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~-~~~~~~L~~ia~t~l~s 160 (519)
T TIGR02341 82 QDDEVGDGTTSVTVLAAELLREAEKLVNQKIHPQTIISGYRRATKAAQEALKKSSIDNGSDK-TKFRDDLLNIARTTLSS 160 (519)
T ss_pred hHhhhCCchhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhcccccCcc-cccHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999886421 11357899999999999
Q ss_pred CccCchhHHHHHHHHHHHHHhCCCCCCcceeEEEecCCCcccceeEEEEEEecccCCCcccCCcceecCceEEEeecccc
Q 008527 169 KLIGGEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNIELE 248 (562)
Q Consensus 169 k~~~~~~~~ls~li~~Av~~v~~~~d~~~I~i~~i~gg~~~ds~li~Giv~~~~~~~~~~~~~~~~l~n~kIll~~~~Le 248 (562)
|+.+.+.+.|++++++|+..+....+.++|++.++.|+++++|++++|+++++.+.+ .||++++||+|++++++|+
T Consensus 161 ki~~~~~~~~s~l~~~av~~i~~~~~~~~i~i~k~~G~s~~~s~l~~G~v~~~~~~~----~~~~~~~n~~Ili~~~~Le 236 (519)
T TIGR02341 161 KILSQHKDHFAQLAVDAVLRLKGSGNLDAIQIIKKLGGSLNDSYLDEGFLLEKKIGV----NQPKRIENAKILIANTPMD 236 (519)
T ss_pred hhhhhHHHHHHHHHHHHHHHhccCCChhheEEEEccCCCcccceEEeeEEEeccCCC----CCceeeccccEEEEecCCC
Confidence 999999999999999999998543366789999999999999999999999999764 3588999999999999999
Q ss_pred cccccc-CceEEecCHHhHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcccHHHHHHHHhcCccccCCCChHHHHHHHH
Q 008527 249 LKSEKE-NAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAA 327 (562)
Q Consensus 249 ~~~~~~-~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lIi~~~~v~~~al~~l~~~~I~~v~~v~~~~Le~Ia~ 327 (562)
+.+++. ++++.+++++++..+.+.|++++.++++.|++.|++++++++.|++.+++||.++||++++++++.+|+|||+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~I~~~g~~~v~~~~~I~~~~~~~l~~~~I~~v~~~~~~~l~~ia~ 316 (519)
T TIGR02341 237 TDKVKVFGSRVRVDSTAKVAELEAAEKEKMKEKVEKILKHNINCFINRQLIYNYPEQLFADAGVMAIEHADFEGIERLAL 316 (519)
T ss_pred CCccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEECCcCCHHHHHHHHHCCcEEEecCCHHHHHHHHH
Confidence 999887 8889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCeEecccCCCCCCcccccceEEEEEECCeEEEEEEcCCCCceEEEEeecCCHHHHHHHHHHHHHHHHHHHHHHhCCc
Q 008527 328 ATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNST 407 (562)
Q Consensus 328 ~TGa~ii~sl~~l~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~~~~TIll~G~t~~~l~e~k~~i~dal~~~~~~l~~~~ 407 (562)
+|||++++++++++++++|+|+.|++..+|++||++|+||++++.+||+|||+|+.+++|.+|+++||++++++++++++
T Consensus 317 ~tGa~ii~~~~~~~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~TIllrG~t~~~l~E~er~i~Dal~~~~~~~~~~~ 396 (519)
T TIGR02341 317 VTGGEIVSTFDHPELVKLGSCDLIEEIMIGEDKLLKFSGVKLGEACTIVLRGATQQILDESERSLHDALCVLSQTVKESR 396 (519)
T ss_pred HhCCEEecccccCCccccccCceEEEEEECCEEEEEEEcCCCCCEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCccHHHHHHHHHHHhhhccchHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHhccCCCCCCCceeEecCC
Q 008527 408 VVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINT 487 (562)
Q Consensus 408 vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~~~~Gid~~~ 487 (562)
+|||||++|++++++|++++++.++++++++++|++||+.||++|++|||+|+.+++.+|+..|.. ++ .++|+|+.+
T Consensus 397 vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~~a~Ale~ip~~La~NaG~d~~~~l~~l~~~h~~--~~-~~~Gid~~~ 473 (519)
T TIGR02341 397 TVLGGGCSEMLMSKAVAVEAQKVPGKEALAVEAFARALRQLPTIIADNAGFDSAELVAQLRAAHYN--GN-HTMGLDMEE 473 (519)
T ss_pred EEeCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc--CC-CccceecCC
Confidence 999999999999999999988889999999999999999999999999999999999999999976 55 789999999
Q ss_pred CCccccccCCcccchHHHHHHHHHHHHHHHHHHchhHhhcCCCc
Q 008527 488 GGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPKV 531 (562)
Q Consensus 488 g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~iI~~~~~ 531 (562)
|++.||++.|||||+.+|+++|+.|+|+|++|||||++|+.+|+
T Consensus 474 g~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~~~ 517 (519)
T TIGR02341 474 GEIADMRKLGIIESYKVKRAVVSSAAEAAEVILRVDNIIKAAPR 517 (519)
T ss_pred CcccchhhccceEcHHHHHHHHHHHHHHHHHHHhHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999874
No 14
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.5e-103 Score=856.96 Aligned_cols=502 Identities=34% Similarity=0.567 Sum_probs=481.1
Q ss_pred ccccHHHHHHHHHHHHHHHHHhhhccCCCCCceeeeCCCCCeEEecCHHHHhccccccChHHHHHHHHHHhcccccCCch
Q 008527 18 TSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGT 97 (562)
Q Consensus 18 ~~~g~~~~~~n~~~~~~l~~iv~sslGP~G~~kmI~~~~g~~~iTnDG~tIl~~l~~~hP~akll~~~~~~~~~~~GDGT 97 (562)
...+.+++.+|+.||..++++++|||||+||+|||+++.|+++|||||+||+++|+++||+++|++++|++|++++||||
T Consensus 4 ~~~~~~~~~~ni~a~~~ia~~~kttlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hP~akll~~~a~~qd~~~GDGT 83 (517)
T TIGR02342 4 KDKPTDVRTSNIVAAKAVADAIRTSLGPRGMDKMIQSGNGEVIITNDGATILKQMGVIHPAAKMLVELSKAQDIEAGDGT 83 (517)
T ss_pred chhhHHHHHHHHHHHHHHHHHHhCCcCCCCCcEEEEcCCCCEEEeCCHHHHHHhccccChHHHHHHHHHHHHHHHhCCCc
Confidence 35677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhHHCCCChhhHHHHHHHHHHHHHHHHHhhceeccCCChHHHHHHHHHHHHHhhccCccCchhHH
Q 008527 98 TTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKEF 177 (562)
Q Consensus 98 tt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~v~~~~~~~~~~~l~~ia~tsl~sk~~~~~~~~ 177 (562)
||+++|+++||+++.+++++|+||+.|++||+.|++.+++.|+++++|++..+ ++.|.++|+|++++|+.+.+.+.
T Consensus 84 tt~viLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~----~~~l~~va~tsl~sK~~~~~~~~ 159 (517)
T TIGR02342 84 TSVVILAGALLGACETLLERGIHPTTISESFQIAADEAIKILDEMSIPVDLSD----REILIKSATTSLSSKVVSQYSSL 159 (517)
T ss_pred chHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCccC----HHHHHHHHHHHhccccchhHHHH
Confidence 99999999999999999999999999999999999999999999999986544 67899999999999999999999
Q ss_pred HHHHHHHHHHHhCCC----C-CCcceeEEEecCCCcccceeEEEEEEecccCCCcccCCcceecCceEEEeecccccccc
Q 008527 178 FASMVVDAVGAIGDG----D-RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNIELELKSE 252 (562)
Q Consensus 178 ls~li~~Av~~v~~~----~-d~~~I~i~~i~gg~~~ds~li~Giv~~~~~~~~~~~~~~~~l~n~kIll~~~~Le~~~~ 252 (562)
|++++++|+..++++ . |.++|+++++.||++++|++++|++|++++.++. +||++++||+|++++++|++.++
T Consensus 160 ls~l~~~a~~~v~~~~~~~~~~~~~i~i~k~~Ggs~~ds~li~Givl~k~~~~~~--~mpk~i~n~kI~ll~~~Le~~~~ 237 (517)
T TIGR02342 160 LAPLAVDAVLKVIDPENDKNVDLNDIKVVKKLGGTIDDTELIEGLVFTQKASRSA--GGPTRIEKAKIGLIQFQISPPKT 237 (517)
T ss_pred HHHHHHHHHHHHhccccCCccCHHHeeEEeccCCChhhcEEEeeEEEeccccccC--CCCccccCCcEEEEecCCCCCcc
Confidence 999999999999752 2 6889999999999999999999999999998742 47899999999999999999999
Q ss_pred ccCceEEecCHHhHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcc-----cHHHHHHHHhcCccccCCCChHHHHHHHH
Q 008527 253 KENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAI-----GDLATQYFADRDIFCAGRVAEEDLLRVAA 327 (562)
Q Consensus 253 ~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lIi~~~~v-----~~~al~~l~~~~I~~v~~v~~~~Le~Ia~ 327 (562)
+....+.++++++++++++.|+++++++++++++.|++||+++++| +++++++|.++||.+++++++++|+|||+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~lvi~~~~I~~~~l~~l~~~~l~~~~I~av~~v~~~~LerIa~ 317 (517)
T TIGR02342 238 DMENQVIVNDYAQMDRVLKEERKYILNIVKKIKKTGCNVLLIQKSILRDAVNDLALHFLAKMKIMVVKDIEREEVEFICK 317 (517)
T ss_pred cccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcccccccHHHHHHHhhCCceEEecCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998 89999999999999999999999999999
Q ss_pred HhCCeEecccCCCCCCcccccceEEEEEECCeEEEEEEcCCCC-ceEEEEeecCCHHHHHHHHHHHHHHHHHHHHHHhCC
Q 008527 328 ATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSG-RTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNS 406 (562)
Q Consensus 328 ~TGa~ii~sl~~l~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~-~~~TIll~G~t~~~l~e~k~~i~dal~~~~~~l~~~ 406 (562)
+|||+++++++++++.++|+|+.|++.++++++|+++++++++ +.+||+|||+|+.+++|.+|+++||+++++++++++
T Consensus 318 ~tGa~ii~~~~~l~~~~LG~~~~v~~~~~~~~~~~~i~~~~~~~~~~tIllrG~t~~~l~E~er~i~DAl~~v~~~~~~~ 397 (517)
T TIGR02342 318 TIGCKPIASIDHFTADKLGSAELVEEVTTDGGKIIKITGIQNAGKTVTVLLRGSNKLVIDEAERSLHDALCVIRSLVKKR 397 (517)
T ss_pred HHCCEEEcchhhcCcccCcCCceEEEEEECCeEEEEEEccCCCCceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 9999999999999999999999999999999999999999874 899999999999999999999999999999999999
Q ss_pred ceeccCCccHHHHHHHHHHHhhhccchHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHhccCCCCCCCceeEecC
Q 008527 407 TVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDIN 486 (562)
Q Consensus 407 ~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~~~~Gid~~ 486 (562)
++|||||++|++++++|++++.+.++++|+++++|++||+.||++|++|||+|+.+++.+|+..|.. ++ .++|+|+.
T Consensus 398 ~~VpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~--~~-~~~Gid~~ 474 (517)
T TIGR02342 398 GLIPGGGAPEIEIAIKLSKLARTMKGVESYCVRAFADALEVIPYTLAENAGLNPIDVVTELRNRHAN--GE-KYAGISVR 474 (517)
T ss_pred CEEECcCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc--CC-CccceecC
Confidence 9999999999999999999988889999999999999999999999999999999999999999976 66 78999999
Q ss_pred CCCccccccCCcccchHHHHHHHHHHHHHHHHHHchhHhhcC
Q 008527 487 TGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKN 528 (562)
Q Consensus 487 ~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~iI~~ 528 (562)
+|+++||++.|||||+.+|+++|+.|+|+|++|||||++|..
T Consensus 475 ~g~i~d~~~~gI~dp~~vk~~ai~~A~e~a~~iL~iD~ii~~ 516 (517)
T TIGR02342 475 KGGITDMLEEEVLQPLLVTTSAVTLASETVRMILKIDDIVFT 516 (517)
T ss_pred CCCccchhhccceEcHHHHHHHHHHHHHHHHHHhcccceeec
Confidence 999999999999999999999999999999999999999875
No 15
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=2.1e-103 Score=857.41 Aligned_cols=503 Identities=35% Similarity=0.567 Sum_probs=482.5
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhhccCCCCCceeeeCCCCCeEEecCHHHHhccccccChHHHHHHHHHHhcccccCCc
Q 008527 17 DTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDG 96 (562)
Q Consensus 17 ~~~~g~~~~~~n~~~~~~l~~iv~sslGP~G~~kmI~~~~g~~~iTnDG~tIl~~l~~~hP~akll~~~~~~~~~~~GDG 96 (562)
++..+.+++++|+.||..++++++|||||+||+|||+++.|+++|||||+||+++|+++||+++|+++++++|++++|||
T Consensus 2 ~~~~~~~~~~~ni~a~~~i~~~v~ttlGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hp~a~ll~~~a~~q~~~~GDG 81 (515)
T cd03338 2 DKEKPADVRLSNIQAAKAVADAIRTSLGPRGMDKMIQTGKGEVIITNDGATILKQMSVLHPAAKMLVELSKAQDIEAGDG 81 (515)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCCeeeeCCCCCEEEECcHHHHHHhCcCcCHHHHHHHHHHHHHHhHhcCC
Confidence 46678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHhHHCCCChhhHHHHHHHHHHHHHHHHHhhceeccCCChHHHHHHHHHHHHHhhccCccCchhH
Q 008527 97 TTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKE 176 (562)
Q Consensus 97 Ttt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~v~~~~~~~~~~~l~~ia~tsl~sk~~~~~~~ 176 (562)
|||+++|+++|++++.+++++|+||..|++||++|.+.+++.|+++++|++..+ ++.|.++|+|+++||+++.+++
T Consensus 82 Ttt~vvLa~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~a~~v~~~~----~~~l~~va~ts~~sK~~~~~~~ 157 (515)
T cd03338 82 TTSVVVLAGALLSACESLLKKGIHPTVISESFQIAAKKAVEILDSMSIPVDLND----RESLIKSATTSLNSKVVSQYSS 157 (515)
T ss_pred cchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCCC----HHHHHHHHHHHhccccchhhHH
Confidence 999999999999999999999999999999999999999999999999986544 5789999999999999999999
Q ss_pred HHHHHHHHHHHHhCCC----C-CCcceeEEEecCCCcccceeEEEEEEecccCCCcccCCcceecCceEEEeeccccccc
Q 008527 177 FFASMVVDAVGAIGDG----D-RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNIELELKS 251 (562)
Q Consensus 177 ~ls~li~~Av~~v~~~----~-d~~~I~i~~i~gg~~~ds~li~Giv~~~~~~~~~~~~~~~~l~n~kIll~~~~Le~~~ 251 (562)
++++++++|+.+++++ . |.++|+++++.|++++||++++|++|++++.++++ ||+.++||++++++++|++.+
T Consensus 158 ~ls~li~~A~~~v~~~~~~~~~d~~~i~i~~~~Ggs~~ds~lv~Giv~~k~~~~~~~--~p~~i~n~ki~ll~~~le~~~ 235 (515)
T cd03338 158 LLAPIAVDAVLKVIDPATATNVDLKDIRIVKKLGGTIEDTELVDGLVFTQKASKKAG--GPTRIEKAKIGLIQFCLSPPK 235 (515)
T ss_pred HHHHHHHHHHHHhhcccccCcCCHHHeEEEEecCCChhhceeeeeEEEeccccCcCC--CCccccCCcEEEEeccccccc
Confidence 9999999999999863 2 68899999999999999999999999999999764 488999999999999999999
Q ss_pred cccCceEEecCHHhHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcc-----cHHHHHHHHhcCccccCCCChHHHHHHH
Q 008527 252 EKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAI-----GDLATQYFADRDIFCAGRVAEEDLLRVA 326 (562)
Q Consensus 252 ~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lIi~~~~v-----~~~al~~l~~~~I~~v~~v~~~~Le~Ia 326 (562)
++.+..+.++++++++++.++|+++++++++++++.|++||+++++| +++++++|.++||++++++++++|+|||
T Consensus 236 ~~~~~~~~i~~~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~i~~~~v~~l~~~~l~~~~I~av~~~~~~~LerIa 315 (515)
T cd03338 236 TDMDNNIVVNDYAQMDRILREERKYILNMCKKIKKSGCNVLLIQKSILRDAVSDLALHFLAKLKIMVVKDIEREEIEFIC 315 (515)
T ss_pred cccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcccccccHHHHHHHHHCCceEEecCCHHHHHHHH
Confidence 99989999999999999999999999999999999999999999987 8999999999999999999999999999
Q ss_pred HHhCCeEecccCCCCCCcccccceEEEEEECCeEEEEEEcCCC-CceEEEEeecCCHHHHHHHHHHHHHHHHHHHHHHhC
Q 008527 327 AATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPS-GRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKN 405 (562)
Q Consensus 327 ~~TGa~ii~sl~~l~~~~lG~~~~v~~~~ig~~~~~~~~g~~~-~~~~TIll~G~t~~~l~e~k~~i~dal~~~~~~l~~ 405 (562)
++|||+++++++++++..+|+|+.|++.++|+++|++|+++++ ++.|||+|||+|+.+++|.+|+++||++++++++++
T Consensus 316 ~~tGa~ii~sl~~l~~~~LG~~~~v~~~~~g~~~~~~i~~~~~~~~~~TIllrG~t~~~l~e~~r~i~Dal~~~~~~~~~ 395 (515)
T cd03338 316 KTIGCKPVASIDHFTEDKLGSADLVEEVSLGDGKIVKITGVKNPGKTVTILVRGSNKLVLDEAERSLHDALCVIRCLVKK 395 (515)
T ss_pred HHHCCEEecccccCCHhhCCCCceEEEEEECCeEEEEEEecCCCCceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999999987 689999999999999999999999999999999999
Q ss_pred CceeccCCccHHHHHHHHHHHhhhccchHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHhccCCCCCCCceeEec
Q 008527 406 STVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDI 485 (562)
Q Consensus 406 ~~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~~~~Gid~ 485 (562)
|++|||||++|++++++|++++.+.++++|+++++|++||+.||++|++|||+|+.+++.+|+..|.. ++ .++|+|+
T Consensus 396 ~~vvpGGG~~e~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~L~~NaG~d~~~~~~~l~~~h~~--~~-~~~G~d~ 472 (515)
T cd03338 396 RALIPGGGAPEIEIALQLSEWARTLTGVEQYCVRAFADALEVIPYTLAENAGLNPISIVTELRNRHAQ--GE-KNAGINV 472 (515)
T ss_pred CCEEECCCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc--cC-Cccceec
Confidence 99999999999999999999988888999999999999999999999999999999999999999976 55 7899999
Q ss_pred CCCCccccccCCcccchHHHHHHHHHHHHHHHHHHchhHhhcC
Q 008527 486 NTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKN 528 (562)
Q Consensus 486 ~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~iI~~ 528 (562)
.+|+++||++.|||||+.+|+++|+.|+|+|++|||||++|+.
T Consensus 473 ~~g~~~d~~~~gI~dp~~vk~~~l~~A~~~a~~iL~ID~ii~~ 515 (515)
T cd03338 473 RKGAITNILEENVVQPLLVSTSAITLATETVRMILKIDDIVLA 515 (515)
T ss_pred cCCCccchhhcCceecHHHHHHHHHHHHHHHHHHhccchhhcC
Confidence 9999999999999999999999999999999999999999863
No 16
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1e-102 Score=853.79 Aligned_cols=510 Identities=37% Similarity=0.609 Sum_probs=481.8
Q ss_pred ccccccHHHHHHHHHHHHHHHHHhhhccCCCCCceeeeCCCCCeEEecCHHHHhccccccChHHHHHHHHHHhcccccCC
Q 008527 16 TDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGD 95 (562)
Q Consensus 16 ~~~~~g~~~~~~n~~~~~~l~~iv~sslGP~G~~kmI~~~~g~~~iTnDG~tIl~~l~~~hP~akll~~~~~~~~~~~GD 95 (562)
.++.+|.++++.|++||..++++++|||||+||+|||+++.|+++|||||+||+++|+++||+++|++++|++|++++||
T Consensus 5 ~~~~~~~~~~~~ni~~~~~l~~~vkttlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~hP~akll~~~a~~qd~~~GD 84 (536)
T TIGR02340 5 GERTSGQDVRTQNVTAAMAIANIVKTSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKILVELAQLQDREVGD 84 (536)
T ss_pred cceecHHHHHHHHHHHHHHHHHHHhcCcCCCcCceEEEcCCCCEEEeccHHHHHHHhcccChHHHHHHHHHHHHHHHhCC
Confidence 35778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHhHHCCCChhhHHHHHHHHHHHHHHHHHh-hceeccCCChHHHHHHHHHHHHHhhccCccCch
Q 008527 96 GTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKE-LAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGE 174 (562)
Q Consensus 96 GTtt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~l~~L~~-~s~~v~~~~~~~~~~~l~~ia~tsl~sk~~~~~ 174 (562)
||||+++|+++|++++.+++++|+||+.|++||+.|++.+++.|++ +++|++..+ .+.+.++|+|+++||+++.+
T Consensus 85 GTTt~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~----~~~l~~va~tsl~sK~~~~~ 160 (536)
T TIGR02340 85 GTTSVVIIAAELLKRADELIKRKVHPTSIISGYRLACKEAVKYIKENLSVSVDELG----REALINVAKTSMSSKIIGLD 160 (536)
T ss_pred ChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCccc----HHHHHHHHHHHhccccchhh
Confidence 9999999999999999999999999999999999999999999987 488887443 57899999999999999999
Q ss_pred hHHHHHHHHHHHHHhCC---C---C-CCcceeEEEecCCCcccceeEEEEEEecccCCCcccCCcceecCceEEEeeccc
Q 008527 175 KEFFASMVVDAVGAIGD---G---D-RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNIEL 247 (562)
Q Consensus 175 ~~~ls~li~~Av~~v~~---~---~-d~~~I~i~~i~gg~~~ds~li~Giv~~~~~~~~~~~~~~~~l~n~kIll~~~~L 247 (562)
+++|++++++|+..++. + . |.++|+++++.|++++++++++|++|+++|.++. ||++++||+|++++++|
T Consensus 161 ~~~ls~l~~~A~~~v~~~~~~g~~~~~~~~I~i~k~~G~s~~~s~~i~Gi~i~~~~~~~~---m~~~~~n~kIli~~~~L 237 (536)
T TIGR02340 161 SDFFSNIVVDAVLAVKMTNENGETKYPIKAVNILKAHGGSARESYLVKGYALNCTRASQQ---MPKRIKKAKIACLDFNL 237 (536)
T ss_pred HHHHHHHHHHHHHHHhcccccCccccchHHeEEEEecCCCccccEEEEEEEEecccCCCC---CcceecCCcEEEEecCC
Confidence 99999999999999852 1 1 6789999999999999999999999999999874 68999999999999999
Q ss_pred cccccccCceEEecCHHhHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcccHHHHHHHHhcCccccCCCChHHHHHHHH
Q 008527 248 ELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAA 327 (562)
Q Consensus 248 e~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lIi~~~~v~~~al~~l~~~~I~~v~~v~~~~Le~Ia~ 327 (562)
++.+++.++++.++++.+++.+.+.|++++.+.+++|++.+++||+++++|++.+++||.++||++++++++++|+|||+
T Consensus 238 ~~~~~~~~~~~~~~~~~~le~~~~~E~~~i~~~i~~I~~~g~~lvi~~k~I~~~a~~~L~k~~I~~i~rv~~~~LerIa~ 317 (536)
T TIGR02340 238 QKQKMALGVQIVVDDPAKLEGIRQREADITKERIKKILKAGANVVLTTGGIDDMCLKYFVEAGAMGVRRCKKEDLKRIAK 317 (536)
T ss_pred CCCcccCceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHCCcEEEecCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCeEecccCCC------CCCcccccceEEEEEECCeEEEEEEcCCCCceEEEEeecCCHHHHHHHHHHHHHHHHHHHH
Q 008527 328 ATGGTVQTSVNNV------VDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRR 401 (562)
Q Consensus 328 ~TGa~ii~sl~~l------~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~~~~TIll~G~t~~~l~e~k~~i~dal~~~~~ 401 (562)
+|||+++++++++ ++.++|+|++|+++++++++|++|+|+++++.+||+|||+|+.+++|++|+++||++++++
T Consensus 318 ~tGa~ii~~~~~l~~~~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~~~~TIlirG~t~~~l~E~~r~i~DAl~~~~~ 397 (536)
T TIGR02340 318 ATGGTLVSTLADLEGEETFDASYLGFADEVVEERIADDECILIKGTKGRKSASIILRGANDFMLDEMERSLHDALCVVKR 397 (536)
T ss_pred HhCCEEecchhhcCccccccccccccCceEEEEEECCeEEEEEEcCCCCCEEEEEEeCCcHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998654 3456999999999999999999999998889999999999999999999999999999999
Q ss_pred HHhCCceeccCCccHHHHHHHHHHHhhhccchHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHhccCCC------
Q 008527 402 ATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPT------ 475 (562)
Q Consensus 402 ~l~~~~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~------ 475 (562)
++++|++|||||++|++++++|++++...++++++++++|++||+.||++|++|||+|+.+++.+|+..|...+
T Consensus 398 ~~~~~~vVpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~fa~AL~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~~~ 477 (536)
T TIGR02340 398 TLESNSVVPGGGAVETALSIYLENFATTLGSREQLAIAEFAEALLIIPKVLAVNAALDSTELVAKLRAYHAAAQLKPEKK 477 (536)
T ss_pred HhcCCCEEECCCHHHHHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCcccccc
Confidence 99999999999999999999999988888899999999999999999999999999999999999999887510
Q ss_pred CCCCceeEecCCCCccccccCCcccchHHHHHHHHHHHHHHHHHHchhHhhcCCCcCC
Q 008527 476 GEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPKVVC 533 (562)
Q Consensus 476 ~~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~iI~~~~~~~ 533 (562)
++ .++|+|+.+|++.||++.|||||+.+|+++|+.|+|+|++|||||++|...|++.
T Consensus 478 ~~-~~~Gid~~~g~~~d~~~~gI~Dp~~~k~~~l~~A~e~a~~iL~ID~ii~~~~~~~ 534 (536)
T TIGR02340 478 HL-KWYGLDLSNGKIRDNKEAGVLEPAVSKVKSLKFATEAAITILRIDDLIKLNPEQS 534 (536)
T ss_pred cC-ceEeEEccCCccccchhccceecHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCC
Confidence 12 5799999999999999999999999999999999999999999999999876543
No 17
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=4.9e-102 Score=845.94 Aligned_cols=513 Identities=27% Similarity=0.503 Sum_probs=483.0
Q ss_pred hccccccccccHH-HHHHHHHHHHHHHHHhhhccCCCCCceeeeCCCCCeEEecCHHHHhccccccChHHHHHHHHHHhc
Q 008527 11 LLKEGTDTSQGKA-QLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQ 89 (562)
Q Consensus 11 ~~~~~~~~~~g~~-~~~~n~~~~~~l~~iv~sslGP~G~~kmI~~~~g~~~iTnDG~tIl~~l~~~hP~akll~~~~~~~ 89 (562)
+++++....+|.+ ++.+|+.||..++++|+|||||+||+|||++++|+++|||||+||+++|+++||+++|++++|++|
T Consensus 5 ~~~~~~~~~~~~~~~~~~ni~a~~~l~~~vkttlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hP~akll~e~a~sq 84 (531)
T TIGR02346 5 LLKEGYRHMSGLEEAVIKNIEACKELSNITRTSLGPNGMNKMVINHLDKLFVTNDAATILRELEVQHPAAKLLVMASEMQ 84 (531)
T ss_pred cccCCcccccchHHHHHHHHHHHHHHHHHHhcccCCCcCCeEEEcCCCCEEEECcHHHHHHhccccCHHHHHHHHHHHHH
Confidence 4566656667755 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCchhHHHHHHHHHHHHHHHhHHCCCChhhHHHHHHHHHHHHHHHHHhhce-eccCCChHHHHHHHHHHHHHhhcc
Q 008527 90 DSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAK-SIEGQSLEEKKRLLSKCAATTLSS 168 (562)
Q Consensus 90 ~~~~GDGTtt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~l~~L~~~s~-~v~~~~~~~~~~~l~~ia~tsl~s 168 (562)
++++||||||+|||+++|++++.+++++|+||..|++||+.|++.+++.|+++++ +++..+ +++.+.++++|+++|
T Consensus 85 d~~~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~---~~~~l~~i~~tsl~s 161 (531)
T TIGR02346 85 ENEIGDGTNLVIVLAGELLDKAEELIRMGLHPSEIIKGYEQALKKAMEVLEELVVWEVEDVR---NKKELIKALKASISS 161 (531)
T ss_pred hhhhCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCCC---CHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999999986 764321 267899999999999
Q ss_pred CccCchhHHHHHHHHHHHHHhCCC---C-CCcceeEEEecCCCcccceeEEEEEEecccCCCcccCCcceecCceEEEee
Q 008527 169 KLIGGEKEFFASMVVDAVGAIGDG---D-RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLN 244 (562)
Q Consensus 169 k~~~~~~~~ls~li~~Av~~v~~~---~-d~~~I~i~~i~gg~~~ds~li~Giv~~~~~~~~~~~~~~~~l~n~kIll~~ 244 (562)
|+.++ +++|++++++|+.+++++ . |.+.|+++++.|++++||++++|++|++++. .+|+.++||||++++
T Consensus 162 K~~~~-~~~ls~l~~~Ai~~v~~~~~~~~~~~~I~i~ki~G~s~~ds~li~Gi~~~~~~~-----~~~k~i~n~kI~l~~ 235 (531)
T TIGR02346 162 KQYGN-EDFLAQLVAKACSTVMPKNPENFNVDNIRVSKIMGGSISNSEVLKGMVFNREAE-----GSVKRVKNAKVAVFS 235 (531)
T ss_pred ccCch-HHHHHHHHHHHHHHHhhcCCCcCChhHeeEEEecCCChhhceeEeeeEEeccCC-----CCceeccCCCEEEEe
Confidence 99887 999999999999999853 2 6789999999999999999999999999943 257899999999999
Q ss_pred ccccccccccCceEEecCHHhHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcccHHHHHHHHhcCccccCCCChHHHHH
Q 008527 245 IELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLR 324 (562)
Q Consensus 245 ~~Le~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lIi~~~~v~~~al~~l~~~~I~~v~~v~~~~Le~ 324 (562)
+|+++.+++.+.++.+++++++.++.+.|+++++++++++++.|++||+++++|+|.+++||.++||.++++++..+|+|
T Consensus 236 ~~l~~~~~~~~~~~~~~~~~~l~~~~~~e~~~i~~~l~~i~~~g~~lvi~~~~I~d~~~~~l~~~~I~av~~~~~~~l~~ 315 (531)
T TIGR02346 236 CPLDTATTETKGTVLIHNAEELLNYSKGEENQIEAYIKAIADSGVNVIVTGGSVGDMALHYCEKYNIMVLKIPSKFELRR 315 (531)
T ss_pred cCcCCCcccCceEEEECCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEECCCcCHHHHHHHHHCCcEEEecCCHHHHHH
Confidence 99999999989999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCeEecccCCCCCCcccccceEEEEEECCeEEEEEEcCC-CCceEEEEeecCCHHHHHHHHHHHHHHHHHHHHHH
Q 008527 325 VAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCP-SGRTATIVLRGGADQFIEEAERSLHDAIMIVRRAT 403 (562)
Q Consensus 325 Ia~~TGa~ii~sl~~l~~~~lG~~~~v~~~~ig~~~~~~~~g~~-~~~~~TIll~G~t~~~l~e~k~~i~dal~~~~~~l 403 (562)
||.+|||++++++++++.+++|+|++|++.++|+++|.+|+++. .+..+||+|||+|+.+++|++|+++||++++++++
T Consensus 316 Ia~~tGa~ii~~l~~~~~~~LG~a~~v~~~~ig~~~~~~i~~~~~~~~~~tI~lrG~t~~~l~E~er~i~DAl~~~k~ai 395 (531)
T TIGR02346 316 LCKTVGATPLARLGAPQPEEIGYVDSVYVSEIGGQKVTVFKQENGDSKISTIILRGSTKNLLDDIERAIDDGVNVIKALV 395 (531)
T ss_pred HHHHHCCEEecccccCCHhHccccceEEEEEECCEEEEEEEccCCCCCeEEEEEECCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999987 57899999999999999999999999999999999
Q ss_pred hCCceeccCCccHHHHHHHHHHHhhhccchHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHhccCCCCCCCceeE
Q 008527 404 KNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGV 483 (562)
Q Consensus 404 ~~~~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~~~~Gi 483 (562)
++|++|||||++|++++.+|++++...++++++++++|++||+.||++|++|||+|+.+++.+|+..|.. ++ .++|+
T Consensus 396 ~~~~vVpGGG~~e~~ls~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~--~~-~~~Gi 472 (531)
T TIGR02346 396 KDNRFLPGAGATEIELALRLKKYANKLPGLDQYAIKKFAEAFEIIPRTLAENAGLNPNEVIPKLYAAHKK--GN-TSSGI 472 (531)
T ss_pred cCCCEEECcCHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--cC-Cccce
Confidence 9999999999999999999999988888999999999999999999999999999999999999999875 55 68999
Q ss_pred ecCCCC--ccccccCCcccchHHHHHHHHHHHHHHHHHHchhHhhcCCCcCCCc
Q 008527 484 DINTGG--IADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPKVVCKQ 535 (562)
Q Consensus 484 d~~~g~--~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~iI~~~~~~~~~ 535 (562)
|+.+|+ +.||++.|||||+.||+++|+.|+|+|++|||||++|...|...++
T Consensus 473 d~~~~~~~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~~~~~~~ 526 (531)
T TIGR02346 473 DIEAESDGVKDASEAGIYDNLATKKWAIKLATEAAVTVLRVDQIIMAKPAGGPK 526 (531)
T ss_pred eeeCCCccccChhhcCceEcHHHHHHHHHHHHHHHHHHhhhhHhhccCCCCCCC
Confidence 999999 5999999999999999999999999999999999999987654443
No 18
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.7e-101 Score=833.59 Aligned_cols=477 Identities=29% Similarity=0.485 Sum_probs=454.8
Q ss_pred ccccccccHHHHHHHHHHHHHHHHHhhhccCCCCCceeeeCCCCCeEEecCHHHHhccccccChHHHHHHHHHHhccccc
Q 008527 14 EGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEV 93 (562)
Q Consensus 14 ~~~~~~~g~~~~~~n~~~~~~l~~iv~sslGP~G~~kmI~~~~g~~~iTnDG~tIl~~l~~~hP~akll~~~~~~~~~~~ 93 (562)
++.+...|.+++..|+.||..++++++|||||+||+|||+++.|+++|||||+||+++|+++||+++|++++|++|++++
T Consensus 3 ~~~~~~~~~~~~~~ni~a~~~l~~~vkttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hP~a~l~~~~a~~qd~~~ 82 (484)
T cd03342 3 PKAEVLRRGQALAVNISAAKGLQDVLKTNLGPKGTLKMLVSGAGDIKLTKDGNVLLSEMQIQHPTASMIARAATAQDDIT 82 (484)
T ss_pred CCcccccHHHHHHHHHHHHHHHHHHHhcCcCCCCCceEEECCCCCEEEeccHHHHHHhccCcCHHHHHHHHHHHHhhhHh
Confidence 45567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHHHHhHHCCCChhhHHHHHHHHHHHHHHHHHhhceeccC-CChHHHHHHHHHHHHHhhccCccC
Q 008527 94 GDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEG-QSLEEKKRLLSKCAATTLSSKLIG 172 (562)
Q Consensus 94 GDGTtt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~v~~-~~~~~~~~~l~~ia~tsl~sk~~~ 172 (562)
||||||+++|+++|++++.+++++|+||..|++||++|.+.+++.|++++.+++. .+ ++.+.++|+++++||+.+
T Consensus 83 GDGTTt~vvLa~~Ll~~a~~li~~gi~P~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~----~~~l~~va~ts~~sk~~~ 158 (484)
T cd03342 83 GDGTTSNVLLIGELLKQAERYIQEGVHPRIITEGFELAKNKALKFLESFKVPVEIDTD----RELLLSVARTSLRTKLHA 158 (484)
T ss_pred CCChhhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCCCC----HHHHHHHHHHHhCcccch
Confidence 9999999999999999999999999999999999999999999999999999864 23 678999999999999999
Q ss_pred chhHHHHHHHHHHHHHhCCCC---CCcceeEEEecCCCcccceeEEEEEEecccCCCcccCCcceecCceEEEeeccccc
Q 008527 173 GEKEFFASMVVDAVGAIGDGD---RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNIELEL 249 (562)
Q Consensus 173 ~~~~~ls~li~~Av~~v~~~~---d~~~I~i~~i~gg~~~ds~li~Giv~~~~~~~~~~~~~~~~l~n~kIll~~~~Le~ 249 (562)
.+++.|++++++|+..++++. |.+.|++++++||+++||++++|++|++++.+++| |++++||+|++++++|++
T Consensus 159 ~~~~~l~~l~~~A~~~v~~~~~~~~~~~I~i~ki~ggs~~ds~~i~G~~~~~~~~~~~m---~~~~~n~~Ill~~~~le~ 235 (484)
T cd03342 159 DLADQLTEIVVDAVLAIYKPDEPIDLHMVEIMQMQHKSDSDTKLIRGLVLDHGARHPDM---PKRVENAYILTCNVSLEY 235 (484)
T ss_pred hHHHHHHHHHHHHHHHHhhcCCccChhHeEEEEecCCChhhceEEeeEEEecCCCCCCC---CccccCceEEEEeCCCCC
Confidence 999999999999999998642 78899999999999999999999999999999875 899999999999999999
Q ss_pred cccccCceEEecCHHhHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcccHHHHHHHHhcCccccCCCChHHHHHHHHHh
Q 008527 250 KSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAAAT 329 (562)
Q Consensus 250 ~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lIi~~~~v~~~al~~l~~~~I~~v~~v~~~~Le~Ia~~T 329 (562)
.+++.+.++.+ +||+++++|++.+++||.++||++++++++++|+|||++|
T Consensus 236 ~~~~~~~~~~~-----------------------------~lvi~~~~I~~~al~~l~~~~I~av~~~~~~~l~~ia~~t 286 (484)
T cd03342 236 EKTEVNSGFFY-----------------------------SVVINQKGIDPPSLDMLAKEGILALRRAKRRNMERLTLAC 286 (484)
T ss_pred CccccCcEEEE-----------------------------EEEEeCCCccHHHHHHHHHCCCeEEEeCCHHHHHHHHHHh
Confidence 98876655543 2999999999999999999999999999999999999999
Q ss_pred CCeEecccCCCCCCcccccceEEEEEECCeEEEEEEcCCCCceEEEEeecCCHHHHHHHHHHHHHHHHHHHHHHhCCcee
Q 008527 330 GGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVV 409 (562)
Q Consensus 330 Ga~ii~sl~~l~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~~~~TIll~G~t~~~l~e~k~~i~dal~~~~~~l~~~~vv 409 (562)
||++++++++++++++|+|+.+++..+|+++|++|+|+++++.+||+|||+|+.+++|.||+++||++++++++++|++|
T Consensus 287 Ga~ii~~l~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~~~~tI~lrg~t~~~l~E~er~l~DAl~~vk~~~~~~~~v 366 (484)
T cd03342 287 GGVAMNSVDDLSPECLGYAGLVYERTLGEEKYTFIEGVKNPKSCTILIKGPNDHTITQIKDAIRDGLRAVKNAIEDKCVV 366 (484)
T ss_pred CCEEecccccCChhhCcccceEEEEEECCeEEEEEECCCCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhcCCcEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCccHHHHHHHHHHHhhhccchHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHhccCCCCCCCceeEecCCCC
Q 008527 410 AGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGG 489 (562)
Q Consensus 410 pGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~~~~Gid~~~g~ 489 (562)
||||++|++++.+|++++...++++|+++++|++||+.||++|++|||+|+.+++.+|+..|.+ ++ .++|+|+.+|+
T Consensus 367 pGGGa~e~~ls~~L~~~~~~~~~~~~~~i~~~a~Al~~ip~~La~NaG~d~~~~l~~l~~~h~~--~~-~~~Gid~~~g~ 443 (484)
T cd03342 367 PGAGAFEVALYAHLKEFKKSVKGKAKLGVQAFADALLVIPKTLAENSGLDVQETLVKLQDEYAE--GG-QVGGVDLDTGE 443 (484)
T ss_pred eCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc--cC-CceeeeCCCCc
Confidence 9999999999999999988889999999999999999999999999999999999999988876 55 78999999999
Q ss_pred ccccccCCcccchHHHHHHHHHHHHHHHHHHchhHhhcCC
Q 008527 490 IADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNP 529 (562)
Q Consensus 490 ~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~iI~~~ 529 (562)
++||++.|||||+.+|+++|+.|+|+|++|||||++|+.+
T Consensus 444 ~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~ID~ii~~~ 483 (484)
T cd03342 444 PMDPESEGIWDNYSVKRQILHSATVIASQLLLVDEIIRAG 483 (484)
T ss_pred ccchhhcCcEEcHHHHHHHHHHHHHHHHHHhhhhHhhhcC
Confidence 9999999999999999999999999999999999999764
No 19
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=2.5e-99 Score=816.70 Aligned_cols=467 Identities=34% Similarity=0.632 Sum_probs=443.9
Q ss_pred hccccccccccHHHHHHHHHHHHHHHHHhhhccCCCCCceeeeCCCCCeEEecCHHHHhccccccChHHHHHHHHHHhcc
Q 008527 11 LLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQD 90 (562)
Q Consensus 11 ~~~~~~~~~~g~~~~~~n~~~~~~l~~iv~sslGP~G~~kmI~~~~g~~~iTnDG~tIl~~l~~~hP~akll~~~~~~~~ 90 (562)
+++++.+...|.+++.+|+.||..++++++|||||+|++|||+++.|+++|||||+||+++|+++||+++|+++++++|+
T Consensus 4 ~~~~~~~~~~~~~~~~~ni~a~~~l~~~~~tslGP~G~~kmi~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~q~ 83 (480)
T cd03337 4 VLNQNTKRESGRKAQLGNIQAAKTVADVIRTCLGPRAMLKMLLDPMGGIVLTNDGNAILREIDVAHPAAKSMIELSRTQD 83 (480)
T ss_pred eccCCCccccHHHHHHHHHHHHHHHHHHHhccCCCCcCceEeEcCCCCEEEeccHHHHHHhccccChHHHHHHHHHHhHH
Confidence 45677788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCchhHHHHHHHHHHHHHHHhHHCCCChhhHHHHHHHHHHHHHHHHHhhceeccCCChHHHHHHHHHHHHHhhccCc
Q 008527 91 SEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKL 170 (562)
Q Consensus 91 ~~~GDGTtt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~v~~~~~~~~~~~l~~ia~tsl~sk~ 170 (562)
+++||||||+++|+++||+++.+++++|+||..|++||+.|.+.+++.|++++++++..+ ++.+.++++|+++||+
T Consensus 84 ~~~GDGTtt~vvL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~----~~~l~~i~~t~l~sK~ 159 (480)
T cd03337 84 EEVGDGTTSVIILAGEILAVAEPFLERGIHPTVIIKAYRKALEDALKILEEISIPVDVND----RAQMLKIIKSCIGTKF 159 (480)
T ss_pred HHhCCCcchhHhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccccCC----HHHHHHHHHHHhccCc
Confidence 999999999999999999999999999999999999999999999999999999987544 6789999999999999
Q ss_pred cCchhHHHHHHHHHHHHHhCCCC-----CCc---ceeEEEecCCCcccceeEEEEEEecccCCCcccCCcceecCceEEE
Q 008527 171 IGGEKEFFASMVVDAVGAIGDGD-----RLN---MIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILL 242 (562)
Q Consensus 171 ~~~~~~~ls~li~~Av~~v~~~~-----d~~---~I~i~~i~gg~~~ds~li~Giv~~~~~~~~~~~~~~~~l~n~kIll 242 (562)
.+.|.+.|++++++|+..+++++ +.+ +|+|++++||+++||++++|++|++++.|+. ||++++||||++
T Consensus 160 ~~~~~~~ls~lv~~Ai~~v~~~~~~~~~~id~~~~I~i~ki~Ggs~~ds~li~Gvvi~k~~~~~~---m~~~~~n~kIll 236 (480)
T cd03337 160 VSRWSDLMCNLALDAVKTVAVEENGRKKEIDIKRYAKVEKIPGGEIEDSRVLDGVMLNKDVTHPK---MRRRIENPRIVL 236 (480)
T ss_pred chhHHHHHHHHHHHHHHhhccccCCCCCcCChhhceEEEEecCCCHHhcccccceEEeccCCCCC---CCcEecCCCEEE
Confidence 99999999999999999997541 122 6999999999999999999999999999864 689999999999
Q ss_pred eeccccccccccCceEEecCHHhHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcccHHHHHHHHhcCccccCCCChHHH
Q 008527 243 LNIELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDL 322 (562)
Q Consensus 243 ~~~~Le~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lIi~~~~v~~~al~~l~~~~I~~v~~v~~~~L 322 (562)
++++||+ ||+++++|++.+++||.++||++++++++++|
T Consensus 237 l~~~Le~-----------------------------------------lvi~~k~I~d~al~~L~~~~I~~v~~v~~~~L 275 (480)
T cd03337 237 LDCPLEY-----------------------------------------LVITEKGVSDLAQHYLVKAGITALRRVRKTDN 275 (480)
T ss_pred EecCcce-----------------------------------------EEEeCCCccHHHHHHHHHCCcEEEEeCCHHHH
Confidence 9999865 99999999999999999999999999999999
Q ss_pred HHHHHHhCCeEecccCCCCCCcccc-cceEEEEEECCeEEEEEEcCCCCceEEEEeecCCHHHHHHHHHHHHHHHHHHHH
Q 008527 323 LRVAAATGGTVQTSVNNVVDEVLGT-CEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRR 401 (562)
Q Consensus 323 e~Ia~~TGa~ii~sl~~l~~~~lG~-~~~v~~~~ig~~~~~~~~g~~~~~~~TIll~G~t~~~l~e~k~~i~dal~~~~~ 401 (562)
+|||++|||++++++++++++.+|+ |+.+++.++++++|++|+||++++.+||+|||+|+.+++|+||+++||++++++
T Consensus 276 ~rIa~~tGa~ii~~~~~l~~~~LG~~~~~~~~~~~~~~~~~~i~~~~~~~~~TIllrG~t~~~l~e~er~l~DAl~v~~~ 355 (480)
T cd03337 276 NRIARACGATIVNRPEELTESDVGTGAGLFEVKKIGDEYFTFITECKDPKACTILLRGASKDVLNEVERNLQDAMAVARN 355 (480)
T ss_pred HHHHHHHCCEEecchhhCCHHHcCCcccEEEEEEeCCeEEEEEEcCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999 678888888999999999999999999999999999999999999999999999
Q ss_pred HHhCCceeccCCccHHHHHHHHHHHhhhccchHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHhccCCCCCCCce
Q 008527 402 ATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPY 481 (562)
Q Consensus 402 ~l~~~~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~~~~ 481 (562)
+++++++|||||++|++++++|++++.+.++++++++++|++||+.||++|++|||+|+.+++.+|++.|.+ +++.++
T Consensus 356 ~~~~~~~vpGGGa~E~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~--~~~~~~ 433 (480)
T cd03337 356 IILNPKLVPGGGATEMAVSHALSEKAKSIEGVEQWPYKAVASALEVIPRTLAQNCGANVIRTLTELRAKHAQ--GENSTW 433 (480)
T ss_pred HhcCCCEEeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc--cCCCeE
Confidence 999999999999999999999999988889999999999999999999999999999999999999999976 522689
Q ss_pred eEecCCCCccccccCCcccchHHHHHHHHHHHHHHHHHHchhHhhc
Q 008527 482 GVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVK 527 (562)
Q Consensus 482 Gid~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~iI~ 527 (562)
|+|+.+|+++||++.|||||+.+|+++|+.|+|+|++|||||++|.
T Consensus 434 Gid~~~g~i~d~~~~gV~dp~~vk~~~l~~A~e~a~~iL~id~ii~ 479 (480)
T cd03337 434 GIDGETGDIVDMKELGIWDPLAVKAQTYKTAIEAACMLLRIDDIVS 479 (480)
T ss_pred CeeccCCCcccchhccCeEcHHHHHHHHHHHHHHHHHHhhhhheec
Confidence 9999999999999999999999999999999999999999999884
No 20
>KOG0363 consensus Chaperonin complex component, TCP-1 beta subunit (CCT2) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.3e-100 Score=736.70 Aligned_cols=521 Identities=36% Similarity=0.576 Sum_probs=500.3
Q ss_pred hhHhhccccccccccHHHHHHHHHHHHHHHHHhhhccCCCCCceeeeCC--CCCeEEecCHHHHhccccccChHHHHHHH
Q 008527 7 PQIILLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDD--KGTVTISNDGATIMKLLDIVHPAAKILVD 84 (562)
Q Consensus 7 ~~~~~~~~~~~~~~g~~~~~~n~~~~~~l~~iv~sslGP~G~~kmI~~~--~g~~~iTnDG~tIl~~l~~~hP~akll~~ 84 (562)
+|.++++.+.++++|..+|.+.+.++..+.|+|+|||||+||+||++.. .|.+.+||||+|||+++.+.+|+||+|++
T Consensus 2 ~p~~i~~~~~~eErge~ArlssfvGaiaigDlvKsTLGPKGMdKiL~s~~~~~~v~VTNDGAtILksi~vDnpaAkvLv~ 81 (527)
T KOG0363|consen 2 NPVQIFKDGATEERGENARLSSFVGAIAIGDLVKSTLGPKGMDKILQSTGRAGTVMVTNDGATILKSIGVDNPAAKVLVD 81 (527)
T ss_pred ChhhhhcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcchHHHHHhccCCCCceEEecchHHHHHhcCCCCchhhheec
Confidence 4677889999999999999999999999999999999999999999864 47799999999999999999999999999
Q ss_pred HHHhcccccCCchhHHHHHHHHHHHHHHHhHHCCCChhhHHHHHHHHHHHHHHHHHhhceeccCCChHHHHHHHHHHHHH
Q 008527 85 IAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAAT 164 (562)
Q Consensus 85 ~~~~~~~~~GDGTtt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~v~~~~~~~~~~~l~~ia~t 164 (562)
.++.||+++||||||++||+++||+++.+|+.+.+||..|++||+.|.+.|++.|.+.++... .+...+|++|+++|+|
T Consensus 82 ~S~vQD~EvGDGTTSV~vlaaeLlreAeklv~~kiHPq~Ii~GyR~A~~~a~eaL~~~s~dns-~~~~kfr~DLl~iarT 160 (527)
T KOG0363|consen 82 ISKVQDDEVGDGTTSVTVLAAELLREAEKLVNQKIHPQTIISGYRMATAAALEALTKSSIDNS-SDKEKFREDLLKIART 160 (527)
T ss_pred cccccccccCCCceehHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHhhhhcc-CchHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999888643 4556789999999999
Q ss_pred hhccCccCchhHHHHHHHHHHHHHhCCCCCCcceeEEEecCCCcccceeEEEEEEecccCCCcccCCcceecCceEEEee
Q 008527 165 TLSSKLIGGEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLN 244 (562)
Q Consensus 165 sl~sk~~~~~~~~ls~li~~Av~~v~~~~d~~~I~i~~i~gg~~~ds~li~Giv~~~~~~~~~~~~~~~~l~n~kIll~~ 244 (562)
.|+||+.++..++|++|+++|+.++....+++.|.|+|..||+++||++-+|+++++.+.. ++|++++||+||+-|
T Consensus 161 TL~SKiLsq~kehFaelavdAV~rLkGs~nL~~IqIIK~~Gg~l~dSfLDeGFlL~K~igv----~qpkriena~iLIAN 236 (527)
T KOG0363|consen 161 TLSSKILSQDKEHFAELAVDAVLRLKGSTNLEAIQIIKKLGGKLEDSFLDEGFLLDKKIGV----NQPKRIENAKILIAN 236 (527)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHhcCCCCccceeeehhcCCccccccccccceeccccCC----CCcccccccceEEec
Confidence 9999999999999999999999999766689999999999999999999999999998864 468999999999999
Q ss_pred cccccccccc-CceEEecCHHhHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcccHHHHHHHHhcCccccCCCChHHHH
Q 008527 245 IELELKSEKE-NAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLL 323 (562)
Q Consensus 245 ~~Le~~~~~~-~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lIi~~~~v~~~al~~l~~~~I~~v~~v~~~~Le 323 (562)
-+.+..+.+. .+.+.+++...+.++...|++.++..+++|.++|+|+.++..-|.++..++|.+.||+++.+.+.+-+|
T Consensus 237 T~mDtDKvKvfGarvrVds~~klaelE~AEkeKmK~KV~kI~~hgiN~FiNRQLiYnyPeqLf~dagi~aIEHADFdGiE 316 (527)
T KOG0363|consen 237 TPMDTDKVKVFGARVRVDSTAKLAELEKAEKEKMKEKVEKILKHGINVFINRQLIYNYPEQLFADAGIMAIEHADFDGIE 316 (527)
T ss_pred CCCcccceeeecceEeecchhHHHHHHHHHHHHHHHHHHHHHhcCCcEEeehhHhhcCHHHHHhhcCcceeecccchhHH
Confidence 9999988877 678899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCeEecccCCCCCCcccccceEEEEEECCeEEEEEEcCCCCceEEEEeecCCHHHHHHHHHHHHHHHHHHHHHH
Q 008527 324 RVAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRAT 403 (562)
Q Consensus 324 ~Ia~~TGa~ii~sl~~l~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~~~~TIll~G~t~~~l~e~k~~i~dal~~~~~~l 403 (562)
|++.+||+.|++.||+++...+|+|+.+++..+|++++++|+|++....|||+|||+|+++|||.+|++|||||++....
T Consensus 317 RLalvtGGeI~STFd~p~~~klG~C~~IeeimiGed~li~FSGv~~GeActIVlrGat~q~LDEaeRslHDALcVLaqtv 396 (527)
T KOG0363|consen 317 RLALVTGGEIVSTFDNPELVKLGECDLIEEIMIGEDKLIKFSGVKLGEACTIVLRGATQQILDEAERSLHDALCVLAQTV 396 (527)
T ss_pred HHhhcccceeeeccCCcchhccccchhhHHHhcCccceeeecccccccceEEEEecccHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCceeccCCccHHHHHHHHHHHhhhccchHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHhccCCCCCCCceeE
Q 008527 404 KNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGV 483 (562)
Q Consensus 404 ~~~~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~~~~Gi 483 (562)
++.|++.||||.||..+.++.+++.+.++++..++++|++||..+|.+|+.|+|||+.+++++||+.|.. |. ..+|+
T Consensus 397 ~esrvv~GgG~sEm~Ma~av~~~A~~~pGkea~AieAfarAL~qlPtiiaDNaG~dsaelva~Lra~h~~--g~-~t~Gl 473 (527)
T KOG0363|consen 397 KESRVVLGGGCSEMLMAKAVDKEAQETPGKEALAIEAFARALRQLPTIIADNAGYDSAELVAQLRAEHYN--GR-TTMGL 473 (527)
T ss_pred ccceeeecCCcHHHHHHHHHHHHHhhCCchhhHHHHHHHHHHHhcchhhhccCCCCHHHHHHHHHHHhhc--CC-ccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999987 87 89999
Q ss_pred ecCCCCccccccCCcccchHHHHHHHHHHHHHHHHHHchhHhhcCCCcCCCc
Q 008527 484 DINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPKVVCKQ 535 (562)
Q Consensus 484 d~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~iI~~~~~~~~~ 535 (562)
|+.+|++.||.+.||+|++.+|.+++..|.|++.+|||+|.||...|+++.+
T Consensus 474 d~~~G~i~dm~~~Gi~es~~vK~~vv~sasEaae~ilrvD~Iik~aPR~r~~ 525 (527)
T KOG0363|consen 474 DVRNGEIGDMRELGIVESLKVKQAVVSSASEAAEMILRVDNIIKAAPRERER 525 (527)
T ss_pred ccccCchhhHHHhhhHHHHHHHHHHHhhhHHHHHHHHhhhhhhhcCCccccc
Confidence 9999999999999999999999999999999999999999999999988764
No 21
>KOG0358 consensus Chaperonin complex component, TCP-1 delta subunit (CCT4) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.2e-99 Score=735.44 Aligned_cols=502 Identities=35% Similarity=0.573 Sum_probs=480.6
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhhccCCCCCceeeeCCCCCeEEecCHHHHhccccccChHHHHHHHHHHhcccccCCc
Q 008527 17 DTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDG 96 (562)
Q Consensus 17 ~~~~g~~~~~~n~~~~~~l~~iv~sslGP~G~~kmI~~~~g~~~iTnDG~tIl~~l~~~hP~akll~~~~~~~~~~~GDG 96 (562)
+.....+.|.+||+|++++++.++|||||+||||||++..|+++|||||+|||+.|++-||+++||++++..||.++|||
T Consensus 20 d~ekp~~vR~sni~Aa~avadairTSLGPkGmDKMIq~~~gev~iTNDGaTILk~m~vlhP~akmLvelS~aQD~eaGDG 99 (534)
T KOG0358|consen 20 DKEKPEQVRFSNIQAARAVADAIRTSLGPKGMDKMIQTGKGEVIITNDGATILKQMNVLHPAAKMLVELSAAQDSEAGDG 99 (534)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHhccCccchhhHhhcCCCcEEEecChHHHHHHHhhhChHHHHHHHhhhhccccccCC
Confidence 45577889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHhHHCCCChhhHHHHHHHHHHHHHHHHHhhceeccCCChHHHHHHHHHHHHHhhccCccCchhH
Q 008527 97 TTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKE 176 (562)
Q Consensus 97 Ttt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~v~~~~~~~~~~~l~~ia~tsl~sk~~~~~~~ 176 (562)
|||+|+|+++||+.+..|+++|+||+.|...|+.|.++++++|++++.|++-+| ++.|.+-|.|+|+||+.++++.
T Consensus 100 TTsVVilaGaLL~~~~~LL~kgiHPtvIsdsfq~a~~~~v~il~~m~~~velsd----re~Li~~atTsLnSKvvSq~s~ 175 (534)
T KOG0358|consen 100 TTSVVILAGALLEAAEKLLQKGIHPTVISDSFQSAAKKAVDILDEMSVPVELSD----RESLIKSATTSLNSKVVSQYSS 175 (534)
T ss_pred ceEEEEehhhHHHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHHhcCCCcccCc----HHHHHHHHHhHhhHHHHHhhcc
Confidence 999999999999999999999999999999999999999999999999999876 8899999999999999999999
Q ss_pred HHHHHHHHHHHHhCC-C---C-CCcceeEEEecCCCcccceeEEEEEEecccCCCcccCCcceecCceEEEeeccccccc
Q 008527 177 FFASMVVDAVGAIGD-G---D-RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNIELELKS 251 (562)
Q Consensus 177 ~ls~li~~Av~~v~~-~---~-d~~~I~i~~i~gg~~~ds~li~Giv~~~~~~~~~~~~~~~~l~n~kIll~~~~Le~~~ 251 (562)
.++.++++|+.++-. . + |+++|++.|..||.++|+++++|++|++..... ..|++++++||-++.|.|++++
T Consensus 176 llapmAVdAV~kv~dp~~~~nvdlkdIkivkklGgtvdDte~i~glvl~~~~~~~---~gptriekAkIglIQF~iS~PK 252 (534)
T KOG0358|consen 176 LLAPMAVDAVLKVIDPENATNVDLKDIKIVKKLGGTVDDTELIKGLVLTQKASKS---AGPTRIEKAKIGLIQFQISPPK 252 (534)
T ss_pred ccchHHHHHHHhccCcccccccchhhhhhHHhhCCccchhhhhcceEEeeecccC---CCcchhhhceeeEEEEEecCCC
Confidence 999999999999864 2 2 799999999999999999999999999876533 2589999999999999999999
Q ss_pred cccCceEEecCHHhHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcc-----cHHHHHHHHhcCccccCCCChHHHHHHH
Q 008527 252 EKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAI-----GDLATQYFADRDIFCAGRVAEEDLLRVA 326 (562)
Q Consensus 252 ~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lIi~~~~v-----~~~al~~l~~~~I~~v~~v~~~~Le~Ia 326 (562)
+++...+.++.+.+++++++.|+.|+.+++++|++.|+++++.|+++ +|+++|||.+.+|+++.++.++++|.++
T Consensus 253 tdmen~iiv~DyaqMdrilkeER~YiL~mcKkIKk~gcnvLliQKSILRdavsDLAlHfL~klkimvikdieRediefic 332 (534)
T KOG0358|consen 253 TDMENQIIVNDYAQMDRILKEERQYILNMCKKIKKAGCNVLLIQKSILRDAVSDLALHFLAKLKIMVIKDIEREDIEFIC 332 (534)
T ss_pred CCcccceEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEeHHHHHHHHHHHHHHHHHhCcEEEEccccHhhHHHHH
Confidence 99999999999999999999999999999999999999999999876 7999999999999999999999999999
Q ss_pred HHhCCeEecccCCCCCCcccccceEEEEEE-CCeEEEEEEcCCC-CceEEEEeecCCHHHHHHHHHHHHHHHHHHHHHHh
Q 008527 327 AATGGTVQTSVNNVVDEVLGTCEHFEERQV-GNERFNIFSGCPS-GRTATIVLRGGADQFIEEAERSLHDAIMIVRRATK 404 (562)
Q Consensus 327 ~~TGa~ii~sl~~l~~~~lG~~~~v~~~~i-g~~~~~~~~g~~~-~~~~TIll~G~t~~~l~e~k~~i~dal~~~~~~l~ 404 (562)
+.+|+.++.++|.++.+.+|+++.+++..- |+.+++.+.|..+ ...+||++||++...++|.+|++|||||++|..++
T Consensus 333 k~l~c~Pia~id~f~~d~Lg~adlveE~~~~G~gkivk~tg~~n~g~tvsil~RGsn~lvleEaeRSlhDALCVirCLvk 412 (534)
T KOG0358|consen 333 KTLGCKPIADIDHFTADKLGSADLVEETDSSGEGKIVKITGIQNAGRTVSILLRGSNKLVLEEAERSLHDALCVIRCLVK 412 (534)
T ss_pred hhcCCeecchhhhcChhhcCcchhhhhcccCCCccEEEEEEeecCCCceEEEEecCchhhhHHHhhhhhhhhHHHHhhhh
Confidence 999999999999999999999999998744 5669999999887 67999999999999999999999999999999999
Q ss_pred CCceeccCCccHHHHHHHHHHHhhhccchHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHhccCCCCCCCceeEe
Q 008527 405 NSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVD 484 (562)
Q Consensus 405 ~~~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~~~~Gid 484 (562)
.+.++||||+.|+.++..|.++++...+.+.+++++||+|||.||.||++|||++|..++.+||..|.+ |+ .+.||+
T Consensus 413 ~r~li~GGGapEieia~~L~~~a~t~eG~~~yc~rafA~AlEvIP~tLAeNAGLnpI~~VtELRn~haq--ge-~~aGIn 489 (534)
T KOG0358|consen 413 KRALIAGGGAPEIEIALRLSALARTLEGVEAYCWRAFADALEVIPYTLAENAGLNPIATVTELRNRHAQ--GE-KNAGIN 489 (534)
T ss_pred ccceecCCCCcchHHHHHHHHHHhhhccchhHHHHHHHHHHhcccHhHHhhCCCChhhHHHHHHHHHhc--CC-ccccee
Confidence 999999999999999999999999999999999999999999999999999999999999999999987 88 999999
Q ss_pred cCCCCccccccCCcccchHHHHHHHHHHHHHHHHHHchhHhhcC
Q 008527 485 INTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKN 528 (562)
Q Consensus 485 ~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~iI~~ 528 (562)
.+.|.+.||.++.|+.|+.|-.+++..|+|++.+||+||+++..
T Consensus 490 VRkg~~tni~ee~VvQPllVs~SaitlA~Etvr~ILKIDDIv~a 533 (534)
T KOG0358|consen 490 VRKGGITNILEENVVQPLLVSISAITLATETVRSILKIDDIVNA 533 (534)
T ss_pred eecccchhhHHHhcccceeeeHHHHHHHHHHHHHHhhhhhhccc
Confidence 99999999999999999999999999999999999999999864
No 22
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.8e-97 Score=792.05 Aligned_cols=504 Identities=37% Similarity=0.576 Sum_probs=479.1
Q ss_pred cccccccHHHHHHHHHHHHHHHHHhhhccCCCCCceeeeCCCCCeEEecCHHHHhccccccChHHHHHHHHHHhcccccC
Q 008527 15 GTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVG 94 (562)
Q Consensus 15 ~~~~~~g~~~~~~n~~~~~~l~~iv~sslGP~G~~kmI~~~~g~~~iTnDG~tIl~~l~~~hP~akll~~~~~~~~~~~G 94 (562)
+....+|.++|.+|+.|+..++++|++||||+||+|||+++.|++.|||||+||+++|+++||.|||++++|++||+++|
T Consensus 3 ~~~~~~~~~a~~~~~~~~~~la~~vkttLGPkG~~k~l~~~~g~~~iTnDG~tIlkeielehp~akll~eva~~qd~e~G 82 (524)
T COG0459 3 GKERKFGEDARRSNIRAARALADAVKTTLGPKGRNKMLVDSGGDITITNDGVTILKEIELEHPGAKLLVEVAKKQDDEAG 82 (524)
T ss_pred cccccccHHHHHHHHHHHHHHHHHHHhccCCCcCceEEecCCCCEEEecCcceehhhhhccCchhHHHHHHHHHHHHHhc
Confidence 44677899999999999999999999999999999999999779999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHhHHCCCChhhHHHHHHHHHHHHHHHHHhhceeccCCChHHHHHHHHHHHHHhhccCccCch
Q 008527 95 DGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGE 174 (562)
Q Consensus 95 DGTtt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~v~~~~~~~~~~~l~~ia~tsl~sk~~~~~ 174 (562)
|||||++||+++||+++.+++++|+||+.|++||++|.+.+.+.|++.+++++..+ .+. +++.|+++||+..++
T Consensus 83 DGTTtavVLa~all~ea~~li~~gi~P~~I~~G~~~A~~~~~e~l~~~a~~v~~~~----~~~--~~~~t~v~sk~~~~~ 156 (524)
T COG0459 83 DGTTTAVVLAGALLKEAEKLIAAGIHPTVIKRGYRLAVEKAVEELKEIAKPVSDSE----EEL--KIAITSVASKSANSD 156 (524)
T ss_pred CchHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCcch----hhh--hhhhheeeeeeccCh
Confidence 99999999999999999999999999999999999999999999999999998654 222 899999999997766
Q ss_pred hHHHHHHHHHHHHHhCCCC-CCcceeEEEecCCCcccceeEEEEEEecccCCCcccCCc-ceecCceEEEeecccccccc
Q 008527 175 KEFFASMVVDAVGAIGDGD-RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQP-KKFLNPKILLLNIELELKSE 252 (562)
Q Consensus 175 ~~~ls~li~~Av~~v~~~~-d~~~I~i~~i~gg~~~ds~li~Giv~~~~~~~~~~~~~~-~~l~n~kIll~~~~Le~~~~ 252 (562)
+++++++++|+.+++..+ |.+.|.+.+..|+..+++++++|++|+++|.+||| || +.++||+|+++|++|++.++
T Consensus 157 -~~i~~lv~~Av~~v~~~~~d~~~i~~vk~~gg~~~e~~vveG~~~dkg~~s~~~--~~~~~~e~~~Ili~d~~l~~~k~ 233 (524)
T COG0459 157 -EEIGELVVEAVEKVGKEQSDLDGIIIVKESGGSETELEVVEGMVFDKGYLSPYF--MPDKRLENPKILLLDKKLEIKKP 233 (524)
T ss_pred -HHHHHHHHHHHHHhcccccccCCeEEEEecCCCccceEEEeeEEecCCccCCCC--CCccccccceEEEEccccccccc
Confidence 999999999999998755 77999999999999999999999999999998886 78 89999999999999999999
Q ss_pred ccCceEEecCHHhHHHHHHHHH-HHHHHHHHHHHHcCCe-EEEEcCcccHHHHHHHHhcCccccCCCChHHH-HHHHHHh
Q 008527 253 KENAEIRLSDPSQYQSIVDAEW-NIIYDKLDKCVQSGAK-VVLSRLAIGDLATQYFADRDIFCAGRVAEEDL-LRVAAAT 329 (562)
Q Consensus 253 ~~~~~i~i~~~~~~~~~~~~E~-~~l~~~v~~i~~~~~~-lIi~~~~v~~~al~~l~~~~I~~v~~v~~~~L-e~Ia~~T 329 (562)
+.+.++.+++.+++..+.+.|+ +.+..++.++.+.+++ +++++++|+|.+++||.+.+|++++++.++++ ++|++++
T Consensus 234 ~l~~e~~i~~~~~l~~i~e~ee~e~l~~~v~ni~~~g~~~vvv~~~gi~D~~~~~L~d~~Ilt~~~v~~~dl~~~l~~~~ 313 (524)
T COG0459 234 ELPLEIVISSGKPLLIIAEDEEGEALATLVVNILRGGANVVVVKAPGIDDLAKAYLEDIAILTGRRVKKEDLGERLAKLG 313 (524)
T ss_pred cCcceeEecCccHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCCcHHHHHHHHhhcceecceecchhhHHHHHHcc
Confidence 9999999999999999999998 9999999999999999 99999999999999999999999999999999 8999999
Q ss_pred CCeEecccCCCCCCcccc--cceEEEEEECCeEEEEEEcCCC--CceEEEEeecCCHHHHHHHHHHHHHHHHHHHHHHhC
Q 008527 330 GGTVQTSVNNVVDEVLGT--CEHFEERQVGNERFNIFSGCPS--GRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKN 405 (562)
Q Consensus 330 Ga~ii~sl~~l~~~~lG~--~~~v~~~~ig~~~~~~~~g~~~--~~~~TIll~G~t~~~l~e~k~~i~dal~~~~~~l~~ 405 (562)
||.+++.+++++...+|. |..+++.+++++++.+|++++. ++.+||+|||+|+.+++|.||+++|||+++++++++
T Consensus 314 ga~~v~~~~d~t~~~~G~~~~~~ve~~~~~~~~~~~~~~~~~~~~~~~tI~vrgate~~ldE~er~i~DAL~~~~~ave~ 393 (524)
T COG0459 314 GAKIVSVLKDLTTIVLGEGAAGLVEETKTGDYDMEKLQERKAKAGGVATILVRGATEVELDEKERRIEDALNVVRAAVEE 393 (524)
T ss_pred CceEEeecccCceeecCccccceEEEeeccchhhhhhhhhhhcCCCeEEEEECCccHhHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999 9999999999999999999985 789999999999999999999999999999999999
Q ss_pred CceeccCCccHHHHHHHHHHHhhhccc-hHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHhccCCCCCCCceeEe
Q 008527 406 STVVAGGGAIDMEISKYLRQESRAIAG-KSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVD 484 (562)
Q Consensus 406 ~~vvpGGG~~E~~l~~~L~~~~~~~~~-~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~~~~Gid 484 (562)
|++|||||++|++++..|++++...++ ++|+++++|++||+.||++|++|||+|+.+++.+|++.|.. +++|+|
T Consensus 394 g~iV~GGGa~e~~~a~~L~~~~~~~~g~~e~~~i~~~a~Ale~ip~~La~NaG~d~~~v~~~L~~~~~~-----~~~G~d 468 (524)
T COG0459 394 GKIVPGGGAAEIEAALRLREYAMTVEGGDEQLGIEAFARALEAPPRQLAENAGLDPIEVLSKLRSAHAT-----TNYGID 468 (524)
T ss_pred CCeEeCCCHHHHHHHHHHHhhhccCCchHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhcccC-----Ccccee
Confidence 999999999999999999998544455 99999999999999999999999999999999999998742 569999
Q ss_pred cCCCCc-cccccCCcccchHHHHHHHHHHHHHHHHHHchhHhhcCCCcC
Q 008527 485 INTGGI-ADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPKVV 532 (562)
Q Consensus 485 ~~~g~~-~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~iI~~~~~~ 532 (562)
+.+|++ .||.+.|||||+.||+++|++|+|+|.+|||+|++|...|..
T Consensus 469 ~~~~~~~~dm~~~GI~dP~~v~~~al~~A~e~a~llL~~d~iI~~~~~~ 517 (524)
T COG0459 469 AFTGEYEDDMIEAGIIDPLKVKRSALKNAAEAAGLLLTIDDIIAAKPEE 517 (524)
T ss_pred ccCCccccchHhccCcChHHHHHHHHHHHHHHHHHHHHHHHhhccCCcc
Confidence 999999 779999999999999999999999999999999999998765
No 23
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=4e-96 Score=792.03 Aligned_cols=459 Identities=45% Similarity=0.716 Sum_probs=441.5
Q ss_pred ccccHHHHHHHHHHHHHHHHHhhhccCCCCCceeeeCCCCCeEEecCHHHHhccccccChHHHHHHHHHHhcccccCCch
Q 008527 18 TSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGT 97 (562)
Q Consensus 18 ~~~g~~~~~~n~~~~~~l~~iv~sslGP~G~~kmI~~~~g~~~iTnDG~tIl~~l~~~hP~akll~~~~~~~~~~~GDGT 97 (562)
..++.+++.+|++||..++++++|||||+|++|||+++.|+++|||||+||+++|+++||+++++++++++|++++||||
T Consensus 3 ~~~~~~~~~~~~~~~~~l~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIlk~i~~~hp~a~ll~~~~~~~~~~~GDGT 82 (464)
T cd00309 3 REFGEEARLSNINAAKALADAVKTTLGPKGMDKMLVDSLGDPTITNDGATILKEIEVEHPAAKLLVEVAKSQDDEVGDGT 82 (464)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhcccCCCcCcEEEEcCCCCeEEEccHHHHHHhccCcCHHHHHHHHHHHHHHhHhCCch
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhHHCCCChhhHHHHHHHHHHHHHHHHHhhceeccCCChHHHHHHHHHHHHHhhccCccCchhHH
Q 008527 98 TTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKEF 177 (562)
Q Consensus 98 tt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~v~~~~~~~~~~~l~~ia~tsl~sk~~~~~~~~ 177 (562)
||+++|+++|++++.+++++|+||..|++||+.|++.+++.|++++++++..+ ++.+.++++|+++||+.+.|+++
T Consensus 83 tt~viL~~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~----~~~l~~ia~tsl~sK~~~~~~~~ 158 (464)
T cd00309 83 TTVVVLAGELLKEAEKLLAAGIHPTEIIRGYEKAVEKALEILKEIAVPIDVED----REELLKVATTSLNSKLVSGGDDF 158 (464)
T ss_pred hHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcCccCCCC----HHHHHHHhHhcccccccccchHH
Confidence 99999999999999999999999999999999999999999999999865444 68999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCC---CCcceeEEEecCCCcccceeEEEEEEecccCCCcccCCcceecCceEEEeecccccccccc
Q 008527 178 FASMVVDAVGAIGDGD---RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNIELELKSEKE 254 (562)
Q Consensus 178 ls~li~~Av~~v~~~~---d~~~I~i~~i~gg~~~ds~li~Giv~~~~~~~~~~~~~~~~l~n~kIll~~~~Le~~~~~~ 254 (562)
+++++++|+.++++++ +.++|+|+++.||+++||++++|++|++++.+++| |++++||+|++++++|++
T Consensus 159 l~~l~~~Ai~~v~~~~~~~~~~~I~i~k~~gg~~~ds~li~Gi~~~~~~~~~~m---~~~~~n~~Ili~~~~Le~----- 230 (464)
T cd00309 159 LGELVVDAVLKVGKENGDVDLGVIRVEKKKGGSLEDSELVVGMVFDKGYLSPYM---PKRLENAKILLLDCKLEY----- 230 (464)
T ss_pred HHHHHHHHHHHhccccCccccceEEEEecCCCCcccceeeeeEEEecCCCCCCC---ceeecCceEEEEecCcce-----
Confidence 9999999999998742 57899999999999999999999999999999875 799999999999999865
Q ss_pred CceEEecCHHhHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcccHHHHHHHHhcCccccCCCChHHHHHHHHHhCCeEe
Q 008527 255 NAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAAATGGTVQ 334 (562)
Q Consensus 255 ~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lIi~~~~v~~~al~~l~~~~I~~v~~v~~~~Le~Ia~~TGa~ii 334 (562)
||+++++|++.++++|.++||++++++++++|+|||++|||+++
T Consensus 231 ------------------------------------lIi~~~~I~~~al~~L~~~~I~~v~~~~~~~L~~Ia~~tGa~ii 274 (464)
T cd00309 231 ------------------------------------VVIAEKGIDDEALHYLAKLGIMAVRRVRKEDLERIAKATGATIV 274 (464)
T ss_pred ------------------------------------EEecCCCcCHHHHHHHHHCCeEEEEeCCHHHHHHHHHHhCCEEe
Confidence 89999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCcccccceEEEEEECCeEEEEEEcCCCCceEEEEeecCCHHHHHHHHHHHHHHHHHHHHHHhCCceeccCCc
Q 008527 335 TSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGA 414 (562)
Q Consensus 335 ~sl~~l~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~~~~TIll~G~t~~~l~e~k~~i~dal~~~~~~l~~~~vvpGGG~ 414 (562)
+++++++++++|+|+.+++.++|+++|++|.+++.++.+||+|||+|+.+++|+||+++||++++++++++|++|||||+
T Consensus 275 ~~~~~~~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~i~dal~~~~~~~~~~~~vpGGGa 354 (464)
T cd00309 275 SRLEDLTPEDLGTAGLVEETKIGDEKYTFIEGCKGGKVATILLRGATEVELDEAERSLHDALCAVRAAVEDGGIVPGGGA 354 (464)
T ss_pred cccccCCcccCccccEEEEEEEcCeeEEEEEecCCCCEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCcH
Confidence 99999999999999999999999999999999988899999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHhhhccchHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHhccCCCCCCCceeEecCCCCccccc
Q 008527 415 IDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSF 494 (562)
Q Consensus 415 ~E~~l~~~L~~~~~~~~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~~~~Gid~~~g~~~d~~ 494 (562)
+|++++++|++++...++++++++++|++||+.||++|++|||+|+.+++.+|+..|.. +. .++|+|+.+|++.||+
T Consensus 355 ~E~~ls~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~--~~-~~~g~d~~~~~~~d~~ 431 (464)
T cd00309 355 AEIELSKALEELAKTLPGKEQLGIEAFADALEVIPRTLAENAGLDPIEVVTKLRAKHAE--GG-GNAGGDVETGEIVDMK 431 (464)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhc--cC-CCeeEECCCCcEeehh
Confidence 99999999999998889999999999999999999999999999999999999998876 44 6899999999999999
Q ss_pred cCCcccchHHHHHHHHHHHHHHHHHHchhHhhc
Q 008527 495 ANFVWEPAVVKINAINAATEAACLILSVDETVK 527 (562)
Q Consensus 495 ~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~iI~ 527 (562)
+.|||||+.+|+++|+.|+|+|++|||||++|+
T Consensus 432 ~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~ 464 (464)
T cd00309 432 EAGIIDPLKVKRQALKSATEAASLILTIDDIIV 464 (464)
T ss_pred hccCeecHHHHHHHHHHHHHHHHHHHhHHHHhC
Confidence 999999999999999999999999999999984
No 24
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=6.3e-96 Score=788.67 Aligned_cols=460 Identities=31% Similarity=0.547 Sum_probs=435.1
Q ss_pred cccHHHHHHHHHHHHHHHHHhhhccCCCCCceeeeCCCCCeEEecCHHHHhccccccChHHHHHHHHHHhcccccCCchh
Q 008527 19 SQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGTT 98 (562)
Q Consensus 19 ~~g~~~~~~n~~~~~~l~~iv~sslGP~G~~kmI~~~~g~~~iTnDG~tIl~~l~~~hP~akll~~~~~~~~~~~GDGTt 98 (562)
..+.+++.+|++||..+++++++||||+|++|||++++|+++|||||+||+++|+++||+++|+++++++|++++|||||
T Consensus 4 ~~~~~~~~~ni~a~~~l~~~v~ttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~~~~~~GDGTT 83 (472)
T cd03341 4 SGLEEAVLRNIEACKELSQITRTSYGPNGMNKMVINHLEKLFVTSDAATILRELEVQHPAAKLLVMASQMQEEEIGDGTN 83 (472)
T ss_pred chHHHHHHHHHHHHHHHHHHHhcCcCCCCCceEEEcCCCCEEEeCcHHHHHHhccccCHHHHHHHHHHHHHhhhhCCChh
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhHHCCCChhhHHHHHHHHHHHHHHHHHhhcee-ccCCChHHHHHHHHHHHHHhhccCccCchhHH
Q 008527 99 TVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKS-IEGQSLEEKKRLLSKCAATTLSSKLIGGEKEF 177 (562)
Q Consensus 99 t~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~-v~~~~~~~~~~~l~~ia~tsl~sk~~~~~~~~ 177 (562)
|+++|+++|++++.+++++|+||+.|++||+.|++.+++.|++++++ ++..+ +.+.+.++++|+++||..+ ++++
T Consensus 84 t~vvL~~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~---~~~~l~~i~~t~l~sk~~~-~~~~ 159 (472)
T cd03341 84 LVVVLAGELLEKAEELLRMGLHPSEIIEGYEKALKKALEILEELVVYKIEDLR---NKEEVSKALKTAIASKQYG-NEDF 159 (472)
T ss_pred hHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccccCCcc---CHHHHHHHHHHHhcccccc-hHHH
Confidence 99999999999999999999999999999999999999999999876 43321 2678999999999999976 7999
Q ss_pred HHHHHHHHHHHhCCC---C-CCcceeEEEecCCCcccceeEEEEEEecccCCCcccCCcceecCceEEEeeccccccccc
Q 008527 178 FASMVVDAVGAIGDG---D-RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNIELELKSEK 253 (562)
Q Consensus 178 ls~li~~Av~~v~~~---~-d~~~I~i~~i~gg~~~ds~li~Giv~~~~~~~~~~~~~~~~l~n~kIll~~~~Le~~~~~ 253 (562)
|++++++|+.+++++ . +.++|+|++++|++++||++++|++|++.+. .++++++||+|++++++|++
T Consensus 160 l~~l~~~a~~~~~~~~~~~~~~~~i~i~ki~Gg~~~ds~lv~Giv~~~~~~-----~~~~~~~n~~Ili~~~~Le~---- 230 (472)
T cd03341 160 LSPLVAEACISVLPENIGNFNVDNIRVVKILGGSLEDSKVVRGMVFKREPE-----GSVKRVKKAKVAVFSCPFDI---- 230 (472)
T ss_pred HHHHHHHHHHHHhhccCCcCChhHeEEEEecCCCcccceEEeeEEEccccC-----CCceeccCCcEEEEeccccC----
Confidence 999999999999864 2 6789999999999999999999999987653 24588999999999999865
Q ss_pred cCceEEecCHHhHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcccHHHHHHHHhcCccccCCCChHHHHHHHHHhCCeE
Q 008527 254 ENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAAATGGTV 333 (562)
Q Consensus 254 ~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lIi~~~~v~~~al~~l~~~~I~~v~~v~~~~Le~Ia~~TGa~i 333 (562)
|++||+++++|++.+++||+++||++++++++++|+|||++|||++
T Consensus 231 ----------------------------------g~~lvi~~~~I~d~al~~l~~~~I~av~~~~~~~Le~Ia~~tGa~i 276 (472)
T cd03341 231 ----------------------------------GVNVIVAGGSVGDLALHYCNKYGIMVIKINSKFELRRLCRTVGATP 276 (472)
T ss_pred ----------------------------------CCeEEEECCCCCHHHHHHHHHCCeEEEEeCCHHHHHHHHHHhCCEE
Confidence 8999999999999999999999999999999999999999999999
Q ss_pred ecccCCCCCCcccccceEEEEEECCeEEEEEEcCCC-CceEEEEeecCCHHHHHHHHHHHHHHHHHHHHHHhCCceeccC
Q 008527 334 QTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPS-GRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGG 412 (562)
Q Consensus 334 i~sl~~l~~~~lG~~~~v~~~~ig~~~~~~~~g~~~-~~~~TIll~G~t~~~l~e~k~~i~dal~~~~~~l~~~~vvpGG 412 (562)
++++++++++++|+|+.|++.++|+++|++|++++. ++.+||+|||+|+.+++|+||+++||++++++++++|++||||
T Consensus 277 i~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~er~i~DAl~~~~~ai~~~~vVpGG 356 (472)
T cd03341 277 LPRLGAPTPEEIGYCDSVYVEEIGDTKVVVFRQNKEDSKIATIVLRGATQNILDDVERAIDDGVNVFKSLTKDGRFVPGA 356 (472)
T ss_pred ecccccCCHhHCCCceEEEEEEECCeeEEEEEccCCCCCeEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEeCc
Confidence 999999999999999999999999999999999987 8899999999999999999999999999999999999999999
Q ss_pred CccHHHHHHHHHHHhhhccchHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHhccCCCCCCCceeEecCCC--Cc
Q 008527 413 GAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTG--GI 490 (562)
Q Consensus 413 G~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~~~~Gid~~~g--~~ 490 (562)
|++|++++++|++++...++++++++++|++||+.||++|++|||+|+.+++.+|+..|.. ++ .++|+|+.+| ++
T Consensus 357 G~~e~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~L~~NaG~d~~~~~~~l~~~h~~--~~-~~~Gid~~~g~~~~ 433 (472)
T cd03341 357 GATEIELAKKLKEYGEKTPGLEQYAIKKFAEAFEVVPRTLAENAGLDATEVLSELYAAHQK--GN-KSAGVDIESGDEGT 433 (472)
T ss_pred CHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc--cC-CeeeeeccCCCCCc
Confidence 9999999999999988888999999999999999999999999999999999999998866 55 7899999999 99
Q ss_pred cccccCCcccchHHHHHHHHHHHHHHHHHHchhHhhcC
Q 008527 491 ADSFANFVWEPAVVKINAINAATEAACLILSVDETVKN 528 (562)
Q Consensus 491 ~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~iI~~ 528 (562)
+||++.|||||+.||+++|+.|+|+|++|||||++|..
T Consensus 434 ~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~ 471 (472)
T cd03341 434 KDAKEAGIFDHLATKKWAIKLATEAAVTVLRVDQIIMA 471 (472)
T ss_pred cChhhccceecHHHHHHHHHHHHHHHHHHhhhcceeec
Confidence 99999999999999999999999999999999999864
No 25
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism. Folding of newly synthesised polypeptides in the crowded cellular environment requires the assistance of molecular chaperone proteins, such as the large bacterial chaperonins GroEL and GroES. GroEL and GroES prevent aggregation by encapsulating individual chains within the so-called 'Anfinsen cage' provided by the GroEL-GroES complex, where they can fold in isolation from one another []. GroEL consists of two heptameric rings of identical ATPase subunits stacked back to back, containing a cage in each ring. Each subunit consists of three domains. The equatorial domain contains the nucleotide binding site and is connected by a flexible intermediate domain with the apical domain. The latter presents several hydrophobic amino-acid side chains at the top of the ring, orientated towards the cavity of the cage. These side chains are involved in binding either a partially folded polypeptide chain or a single molecule of GroES. The assembly of proteins has been thought to be the sole result of properties inherent in the primary sequence of polypeptides themselves. In some cases, however, structural information from other protein molecules is required for correct folding and subsequent assembly into oligomers []. These 'helper' molecules are referred to as molecular chaperones, a subfamily of which are the chaperonins [], which include 10 kDa and 60 kDa proteins. These are found in abundance in prokaryotes, chloroplasts and mitochondria. They are required for normal cell growth (as demonstrated by the fact that no temperature sensitive mutants for the chaperonin genes can be found in the temperature range 20 to 43 degrees centigrade []), and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between 6 to 8 identical subunits, whereas the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The cpn10 and cpn60 oligomers also require Mg2+-ATP in order to interact to form a functional complex, although the mechanism of this interaction is as yet unknown []. This chaperonin complex is essential for the correct folding and assembly of polypeptides into oligomeric structures, of which the chaperonins themselves are not a part []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. The 60 kDa form of chaperonin is the immunodominant antigen of patients with Legionnaire's disease [], and is thought to play a role in the protection of the Legionella bacteria from oxygen radicals within macrophages. This hypothesis is based on the finding that the cpn60 gene is upregulated in response to hydrogen peroxide, a source of oxygen radicals. Cpn60 has also been found to display strong antigenicity in many bacterial species [], and has the potential for inducing immune protection against unrelated bacterial infections. The RuBisCO subunit binding protein (which has been implicated in the assembly of RuBisCO) and cpn60 have been found to be evolutionary homologues, the RuBisCO subunit binding protein having the C-terminal Gly-Gly-Met repeat found in all bacterial cpn60 sequences. Although the precise function of this repeat is unknown, it is thought to be important as it is also found in 70 kDa heat-shock proteins []. The crystal structure of Escherichia coli GroEL has been resolved to 2.8A []. The TCP-1 family of proteins act as molecular chaperones for tubulin, actin and probably some other proteins. They are weakly, but significantly, related to the cpn60/groEL chaperonin family. ; GO: 0005524 ATP binding, 0044267 cellular protein metabolic process; PDB: 3IZH_B 3IZI_I 3LOS_I 3IYF_H 3KFK_C 3KFE_E 3RUV_C 3IZK_L 3J02_B 3RUQ_A ....
Probab=100.00 E-value=1.6e-92 Score=770.98 Aligned_cols=483 Identities=42% Similarity=0.685 Sum_probs=460.7
Q ss_pred HHHHhhhccCCCCCceeeeCCCCCeEEecCHHHHhccccccChHHHHHHHHHHhcccccCCchhHHHHHHHHHHHHHHHh
Q 008527 35 VADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPF 114 (562)
Q Consensus 35 l~~iv~sslGP~G~~kmI~~~~g~~~iTnDG~tIl~~l~~~hP~akll~~~~~~~~~~~GDGTtt~vvLa~~Ll~~~~~l 114 (562)
|+++|++||||+|++|||+++.|+++|||||+||+++|+++||+++++++++++|++++||||||+++|+++|++++.++
T Consensus 1 l~~~v~sslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~~P~~~ll~~~~~~~~~~~GDGtts~vlL~~~ll~~~~~l 80 (485)
T PF00118_consen 1 LADIVKSSLGPKGRDKLIVNDSGKIIITNDGATILKSLKINHPIAKLLVEASKSQDEEVGDGTTSVVLLACELLRNALKL 80 (485)
T ss_dssp HHHHHGCCSSTTS-EEEEEESSSSEEEESSHHHHHHHSTBSSHHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhcccCcCCCCCeEEEEcCCCCeEEEechhHHHHHhhhccchhhhHHHhHHHHHhhhccccceeeecccchhhhhhhh
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHCCCChhhHHHHHHHHHHHHHHHHHhhceeccCCChHHHHHHHHHHHHHhhccCccCchhHHHHHHHHHHHHHhCCCCC
Q 008527 115 IEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKEFFASMVVDAVGAIGDGDR 194 (562)
Q Consensus 115 i~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~v~~~~~~~~~~~l~~ia~tsl~sk~~~~~~~~ls~li~~Av~~v~~~~d 194 (562)
+++|+||..|++||+.|.+.+++.|++++++++..+ +.++++++|++++|+.+.|.++|++++++|+..+....|
T Consensus 81 i~~gi~p~~I~~~~~~~~~~~~~~l~~~s~~~~~~~-----~~l~~i~~t~l~~k~~~~~~~~l~~li~~a~~~~~~~~~ 155 (485)
T PF00118_consen 81 IKKGIHPQEIIRGLQEALKIILEYLEKISIPINNDD-----ESLLNIAKTSLNSKISSSWSDHLSKLIVDAIKSIKSNFD 155 (485)
T ss_dssp HHTTS-HHHHHHHHHHHHHHHHHHHHHHSEESTSTS-----HHHHHHHHHHHTTSCGGGCHHHHHHHHHHHHHHHTTTHH
T ss_pred hhccccccchhhhhhhhhhhhhhhhhhhhccccccc-----hhhhhhhcccccccccccchhhhhhhHHHHHHhhccccc
Confidence 999999999999999999999999999999987642 699999999999999999999999999999944432225
Q ss_pred CcceeEEEecCCCcccceeEEEEEEecccCCCcccCCcceecCceEEEeeccccccccccCceEEecCHHhHHHHHHHHH
Q 008527 195 LNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNIELELKSEKENAEIRLSDPSQYQSIVDAEW 274 (562)
Q Consensus 195 ~~~I~i~~i~gg~~~ds~li~Giv~~~~~~~~~~~~~~~~l~n~kIll~~~~Le~~~~~~~~~i~i~~~~~~~~~~~~E~ 274 (562)
.+.++++++.|++.+||++++|++|++++.++ +||+++++|+|++++++|+++++ .++++.+++.++++++.++|+
T Consensus 156 ~~~i~i~~i~g~~~~dS~li~Giv~~~~~~~~---~~~~~~~~~~Ill~~~~L~~~~~-~~~~~~~~~~~~~~~~~~~e~ 231 (485)
T PF00118_consen 156 LDNIKIIKIPGGSISDSELINGIVLDKGFSSP---NMPKKIENPKILLLNCPLEYSKS-FKSEIRITSPEQLDELSKQEK 231 (485)
T ss_dssp GGGEEEEEEESSSSGGEEEESEEEESSSBSST---TSBSEEESEEEEEESSEBSSCCH-STEEEEESSTHHHHHHHHHHH
T ss_pred ccchhhhhhccccccccccccceeeecccccc---ccccccccceEEeeecccccccc-cccccchhhHHHHHHHHhhhh
Confidence 67799999999999999999999999999987 46899999999999999999998 899999999999999999999
Q ss_pred HHHHHHHHHHHHcCCeEEEEcCcccHHHHHHHHhcCccccCCCChHHHHHHHHHhCCeEecccCCCCCCcccccceEEEE
Q 008527 275 NIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAAATGGTVQTSVNNVVDEVLGTCEHFEER 354 (562)
Q Consensus 275 ~~l~~~v~~i~~~~~~lIi~~~~v~~~al~~l~~~~I~~v~~v~~~~Le~Ia~~TGa~ii~sl~~l~~~~lG~~~~v~~~ 354 (562)
++++++++++.+.+++||+++++|++.++++|.++||.+++++++++|++|+++|||++++++++++++.+|+|+.+++.
T Consensus 232 ~~l~~~~~~i~~~~~~lIi~~~~i~~~~l~~l~~~~I~~i~~v~~~~l~~i~~~tg~~ii~~~~~l~~~~lG~~~~v~~~ 311 (485)
T PF00118_consen 232 KYLKKILEKIINLGVNLIISQKSIDDEALQYLNKNGILVIRRVSKEDLERIARATGASIISSLDDLSDEDLGFCKSVEER 311 (485)
T ss_dssp HHHHHHHHHHHTTTSSEEEESSEBTHHHHHHHHHCTHEEESSEHHHHHHHHHHHHTSBEBSSCGGSTGGGSEEEEEEEEE
T ss_pred hhhccccceEeeeccceeeeecccccccchhhhhhhhhccccchHHHHHhhhcccCCcEecccccccchhhhhhhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999998889999999999
Q ss_pred EECCeEEEEEE--cCCCCceEEEEeecCCHHHHHHHHHHHHHHHHHHHHHHhCCceeccCCccHHHHHHHHHHHhhhccc
Q 008527 355 QVGNERFNIFS--GCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAG 432 (562)
Q Consensus 355 ~ig~~~~~~~~--g~~~~~~~TIll~G~t~~~l~e~k~~i~dal~~~~~~l~~~~vvpGGG~~E~~l~~~L~~~~~~~~~ 432 (562)
.+++++|++|+ ++..++.+||+|||+++.+++|++++++||+++++++++++++|||||++|++|+++|++++...++
T Consensus 312 ~i~~~~~~~~~~~~~~~~~~~Till~g~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpGGG~~e~~l~~~L~~~~~~~~~ 391 (485)
T PF00118_consen 312 EIGNKKYIFIEGIGCLSSKICTILLRGPTEFELEERERSIHDALKVLRSALKDGGVVPGGGATELHLSKALRKYAKSLSG 391 (485)
T ss_dssp EETSSEEEEEEEHSESSSSEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHSSEEEETTTHHHHHHHHHHHHHHHCSSS
T ss_pred ccccccccccccccccccCceEEEeccccchhHHHHHHHHHHHHHHHHHhccCCceeecCcchhhhhhhhHHHhhhcccC
Confidence 99999999999 5788999999999999999999999999999999999999999999999999999999999998999
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHhccCCCCCCCceeEecCCCCccccccCCcccchHHHHHHHHHH
Q 008527 433 KSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAA 512 (562)
Q Consensus 433 ~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~l~~A 512 (562)
++++++++|++||+.||++|++|||+|+.+++.+|+..|.. . .++|+|+.+|++.||.+.|||||+.+|+++|+.|
T Consensus 392 ~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~~h~~---~-~~~g~d~~~~~i~~~~~~gi~dp~~~k~~~l~~A 467 (485)
T PF00118_consen 392 KEQLAIEAFADALESIPKTLAQNAGLDSSEVISKLKSFHNN---G-NNYGIDLDTGEIVDMKEAGILDPLLVKISALKSA 467 (485)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHTTSTHHHHHHHHHHHHHS---T-TTEEEETTTTEEEETTTTTCEEEHHHHHHHHHHH
T ss_pred chhhhHHHHHHHHHHhhhhhhhccCCCceeeehhhHhhhcc---c-cccCcCccCCceeccccccchhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998854 3 6899999999999999999999999999999999
Q ss_pred HHHHHHHHchhHhhcCCC
Q 008527 513 TEAACLILSVDETVKNPK 530 (562)
Q Consensus 513 ~e~a~~iL~iD~iI~~~~ 530 (562)
+|+|++|||||++|..+|
T Consensus 468 ~~~a~~iL~id~iI~~~~ 485 (485)
T PF00118_consen 468 VEIASLILRIDEIIMAKP 485 (485)
T ss_dssp HHHHHHHHTEEEEEEESS
T ss_pred HHHHHHHHHHHHHHhcCC
Confidence 999999999999998765
No 26
>PRK12849 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=1.1e-90 Score=754.49 Aligned_cols=465 Identities=23% Similarity=0.354 Sum_probs=427.9
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhhccCCCCCceeeeCCCCCeEEecCHHHHhccccccCh----HHHHHHHHHHhcccc
Q 008527 17 DTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHP----AAKILVDIAKSQDSE 92 (562)
Q Consensus 17 ~~~~g~~~~~~n~~~~~~l~~iv~sslGP~G~~kmI~~~~g~~~iTnDG~tIl~~l~~~hP----~akll~~~~~~~~~~ 92 (562)
...+|.+++..|+.++..++++++|||||+||+|||+++.|+++|||||+||+++|+++|| +|++++++|++||++
T Consensus 4 ~~~~~~~a~~~~~~~~~~la~~v~tTLGP~G~~kmi~~~~g~~~ITnDGaTIlk~i~~~hp~~~~~a~ll~~~a~~qd~e 83 (542)
T PRK12849 4 IIKFDEEARRALERGVNKLADAVKVTLGPKGRNVVIDKSFGAPTITKDGVSIAKEIELEDPFENLGAQLVKEVASKTNDV 83 (542)
T ss_pred cccchHHHHHHHHHHHHHHHHHHhcccCCCCCCEEEECCCCCeeEeccHHHHHHHcccCCccHhHHHHHHHHHHHhcCCc
Confidence 3568999999999999999999999999999999999999999999999999999999999 899999999999999
Q ss_pred cCCchhHHHHHHHHHHHHHHHhHHCCCChhhHHHHHHHHHHHHHHHHHhhceeccCCChHHHHHHHHHHHHHhhccCccC
Q 008527 93 VGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIG 172 (562)
Q Consensus 93 ~GDGTtt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~v~~~~~~~~~~~l~~ia~tsl~sk~~~ 172 (562)
+||||||+++|+++||+++.+++++|+||..|++||+.|++.+++.|+++++|++ + .+.+.++|+|++
T Consensus 84 ~GDGTTtvviLageLL~~a~~li~~GihP~~I~~G~~~A~~~~~~~L~~~s~~~~--~----~~~l~~va~ts~------ 151 (542)
T PRK12849 84 AGDGTTTATVLAQALVQEGLKNVAAGANPMDLKRGIDKAVEAVVEELKALARPVS--G----SEEIAQVATISA------ 151 (542)
T ss_pred cCCCccHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhccCCC--C----HHHHHHHHHHhc------
Confidence 9999999999999999999999999999999999999999999999999999886 2 467999999984
Q ss_pred chhHHHHHHHHHHHHHhCCCCCCcceeEEEecCCCccc-ceeEEEEEEecccCCCccc----CCcceecCceEEEeeccc
Q 008527 173 GEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTMRD-SFLVNGVAFKKTFSYAGFE----QQPKKFLNPKILLLNIEL 247 (562)
Q Consensus 173 ~~~~~ls~li~~Av~~v~~~~d~~~I~i~~i~gg~~~d-s~li~Giv~~~~~~~~~~~----~~~~~l~n~kIll~~~~L 247 (562)
++++++++++++|+..++++ +.+.+. .|++.+| +++++|++|+++|.+|+|. +|+++++||+|+++|+.|
T Consensus 152 ~~~~~l~~lv~~Av~~v~~~---g~i~i~--~g~~~~d~~~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~i 226 (542)
T PRK12849 152 NGDEEIGELIAEAMEKVGKD---GVITVE--ESKTLETELEVTEGMQFDRGYLSPYFVTDPERMEAVLEDPLILLTDKKI 226 (542)
T ss_pred CChHHHHHHHHHHHHHhccC---CcEeEE--eCCCcceeEEEEEeEEEecCcccCcccccccCceEEeeCcEEEeecCCc
Confidence 47899999999999999754 334443 6888876 7999999999999999983 578999999999999965
Q ss_pred cccccccCceEEecCHHhHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcccHHHHHHHHhc------CccccCCCC---
Q 008527 248 ELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADR------DIFCAGRVA--- 318 (562)
Q Consensus 248 e~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lIi~~~~v~~~al~~l~~~------~I~~v~~v~--- 318 (562)
+++++ +.++++++.+.+++|||++++|++.++++|.++ +|+++++++
T Consensus 227 -------------~~~~~-----------~~~~l~~i~~~~~~lvI~~~~I~~~al~~l~~~~~~~~~~i~avr~~~~~~ 282 (542)
T PRK12849 227 -------------SSLQD-----------LLPLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGD 282 (542)
T ss_pred -------------CCHHH-----------HHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHhhhhccccEEEEeCCCccc
Confidence 34444 456789999999999999999999999999887 899988776
Q ss_pred --hHHHHHHHHHhCCeEec-----ccCCCCCCcccccceEEEEEECCeEEEEEEcCCCC---------------------
Q 008527 319 --EEDLLRVAAATGGTVQT-----SVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSG--------------------- 370 (562)
Q Consensus 319 --~~~Le~Ia~~TGa~ii~-----sl~~l~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~--------------------- 370 (562)
+++|+|||.+|||++++ ++++++++++|+|+.|++. .+++++++|+.++
T Consensus 283 ~r~~~l~~ia~~tGa~~v~~~~~~~~~~~~~~~LG~~~~v~~~---~~~~~~i~g~~~~~~i~~r~~~l~~~~~~~~~~~ 359 (542)
T PRK12849 283 RRKAMLEDIAILTGGTVISEDLGLKLEEVTLDDLGRAKRVTIT---KDNTTIVDGAGDKEAIEARVAQIRRQIEETTSDY 359 (542)
T ss_pred hhHhHHHHHHHHhCCEEecccccCCcccCCHHHCceeeEEEEe---eeeEEEEeCCCCHHHHHHHHHHHHHHHHhcCcHH
Confidence 56699999999999999 6899998899999999875 3889999988765
Q ss_pred --------------ceEEEEeecCCHHHHHHHHHHHHHHHHHHHHHHhCCceeccCCccHHHHHHHHHHHhhhccchHHH
Q 008527 371 --------------RTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQF 436 (562)
Q Consensus 371 --------------~~~TIll~G~t~~~l~e~k~~i~dal~~~~~~l~~~~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~ 436 (562)
+.+||+|||+|+.+++|.+|+++||++++++++++| +|||||++|++++.+|++++ ..++++|+
T Consensus 360 ~~~~l~eR~~~l~~~~~TI~irG~t~~~l~E~er~i~DAl~~~~~a~~~g-~VpGGGa~e~~ls~~L~~~~-~~~g~~~~ 437 (542)
T PRK12849 360 DREKLQERLAKLAGGVAVIKVGAATEVELKERKDRVEDALNATRAAVEEG-IVPGGGVALLRAAKALDELA-GLNGDQAA 437 (542)
T ss_pred HHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-eecCCCHHHHHHHHHHHHhh-CCChHHHH
Confidence 489999999999999999999999999999999998 99999999999999999998 88999999
Q ss_pred HHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHhccCCCCCCCceeEecCCCCccccccCCcccchHHHHHHHHHHHHHH
Q 008527 437 FINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAA 516 (562)
Q Consensus 437 ~~~~~a~AL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a 516 (562)
++++|++||+.||++|++|||+|+.+++.+|+..| .++|+|+.+|+++||++.|||||+.+|.++|+.|+|+|
T Consensus 438 ~i~~~a~Al~~ip~~La~NaG~d~~~vi~~L~~~~-------~~~G~d~~~g~~~d~~~~GV~Dp~~vk~~al~~A~e~A 510 (542)
T PRK12849 438 GVEIVRRALEAPLRQIAENAGLDGSVVVAKVLELE-------DGFGFNAATGEYGDLIAAGIIDPVKVTRSALQNAASVA 510 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhhC-------CCcceeCCCCccccHHhccCccCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998764 56999999999999999999999999999999999999
Q ss_pred HHHHchhHhhcCCCcCCC
Q 008527 517 CLILSVDETVKNPKVVCK 534 (562)
Q Consensus 517 ~~iL~iD~iI~~~~~~~~ 534 (562)
++||+||++|..+|.+..
T Consensus 511 ~~iL~id~iI~~~~~~~~ 528 (542)
T PRK12849 511 GLLLTTEALVADKPEEED 528 (542)
T ss_pred HHHHhHHHHHhcCCccCC
Confidence 999999999998775433
No 27
>PRK00013 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=9.7e-91 Score=754.83 Aligned_cols=465 Identities=24% Similarity=0.383 Sum_probs=431.3
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhhccCCCCCceeeeCCCCCeEEecCHHHHhccccccCh----HHHHHHHHHHhcccc
Q 008527 17 DTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHP----AAKILVDIAKSQDSE 92 (562)
Q Consensus 17 ~~~~g~~~~~~n~~~~~~l~~iv~sslGP~G~~kmI~~~~g~~~iTnDG~tIl~~l~~~hP----~akll~~~~~~~~~~ 92 (562)
+..+|.+++..|++|+..++++++|||||+|++|||+++.|+++|||||+||+++|+++|| +++|+++++++|+++
T Consensus 4 ~~~~~~~a~~~~i~a~~~ia~~v~ttLGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~~~~~akll~e~a~~qd~e 83 (542)
T PRK00013 4 DIKFGEDARRKLLRGVNKLADAVKVTLGPKGRNVVLEKSFGAPTITKDGVTVAKEIELEDPFENMGAQLVKEVASKTNDV 83 (542)
T ss_pred hhhchHHHHHHHHHHHHHHHHHhhccCCCCCCCEEEECCCCCeeEeccHHHHHHHccCCCchhhHHHHHHHHHHHhcCcc
Confidence 4678999999999999999999999999999999999999999999999999999999999 699999999999999
Q ss_pred cCCchhHHHHHHHHHHHHHHHhHHCCCChhhHHHHHHHHHHHHHHHHHhhceeccCCChHHHHHHHHHHHHHhhccCccC
Q 008527 93 VGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIG 172 (562)
Q Consensus 93 ~GDGTtt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~v~~~~~~~~~~~l~~ia~tsl~sk~~~ 172 (562)
+||||||+++|+++||+++.+++++|+||..|++||+.|.+.+++.|+++++|++ + .+++.++|.|++
T Consensus 84 ~GDGTTtvviLa~~LL~~a~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~a~~~~--~----~~~l~~va~ts~------ 151 (542)
T PRK00013 84 AGDGTTTATVLAQAIVREGLKNVAAGANPMDLKRGIDKAVEAAVEELKKISKPVE--D----KEEIAQVATISA------ 151 (542)
T ss_pred cCCccchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhccCCC--C----HHHHHHHHHhcc------
Confidence 9999999999999999999999999999999999999999999999999999986 2 468999999884
Q ss_pred chhHHHHHHHHHHHHHhCCCCCCcceeEEEecCCCcccceeEEEEEEecccCCCccc----CCcceecCceEEEeecccc
Q 008527 173 GEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFE----QQPKKFLNPKILLLNIELE 248 (562)
Q Consensus 173 ~~~~~ls~li~~Av~~v~~~~d~~~I~i~~i~gg~~~ds~li~Giv~~~~~~~~~~~----~~~~~l~n~kIll~~~~Le 248 (562)
++++.+++++++|+..++++ +.|.|.+..| ..+++++++|++|+++|.+|||. +||++++||+|+++|+.|
T Consensus 152 ~~~~~ls~lv~~Av~~v~~~---g~i~i~~~~~-~~~~~~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ilv~d~~i- 226 (542)
T PRK00013 152 NGDEEIGKLIAEAMEKVGKE---GVITVEESKG-FETELEVVEGMQFDRGYLSPYFVTDPEKMEAELENPYILITDKKI- 226 (542)
T ss_pred cchHHHHHHHHHHHHHhCcC---CcEEEEEcCC-CCceEEEEEeEEecCCcccccccccccCCeEEEecCEEEEEcCcc-
Confidence 47899999999999999754 3577776665 77899999999999999999983 578999999999999964
Q ss_pred ccccccCceEEecCHHhHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcccHHHHHHHHhcC------ccccCCCC----
Q 008527 249 LKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRD------IFCAGRVA---- 318 (562)
Q Consensus 249 ~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lIi~~~~v~~~al~~l~~~~------I~~v~~v~---- 318 (562)
+++++ +.++++++.+.+++|||++++|++.++++|..++ |+++++++
T Consensus 227 ------------~~~~~-----------l~~~l~~i~~~g~~lvi~~~~I~~~al~~l~~~~~~g~~~i~avr~~~~~~~ 283 (542)
T PRK00013 227 ------------SNIQD-----------LLPVLEQVAQSGKPLLIIAEDVEGEALATLVVNKLRGTLKVVAVKAPGFGDR 283 (542)
T ss_pred ------------CCHHH-----------HHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHcCCcccceEEEEecCCcccc
Confidence 45555 4577999999999999999999999999999886 88888775
Q ss_pred -hHHHHHHHHHhCCeEec-----ccCCCCCCcccccceEEEEEECCeEEEEEEcCCCCc---------------------
Q 008527 319 -EEDLLRVAAATGGTVQT-----SVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGR--------------------- 371 (562)
Q Consensus 319 -~~~Le~Ia~~TGa~ii~-----sl~~l~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~~--------------------- 371 (562)
+++|+|||.+|||++++ ++++++.++||+|+.+++.+ +++++|+++.+++
T Consensus 284 r~~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~ 360 (542)
T PRK00013 284 RKAMLEDIAILTGGTVISEELGLKLEDATLEDLGQAKKVVVTK---DNTTIVDGAGDKEAIKARVAQIKAQIEETTSDYD 360 (542)
T ss_pred hhhhHHHHHHHcCCEEecccccCCcccCCHHHCCeeeEEEEec---CEEEEEeCCCCHHHHHHHHHHHHHHHhhcCCHHH
Confidence 88999999999999999 79999999999999999863 8999999887665
Q ss_pred --------------eEEEEeecCCHHHHHHHHHHHHHHHHHHHHHHhCCceeccCCccHHHHHHHHHHHhhhccchHHHH
Q 008527 372 --------------TATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFF 437 (562)
Q Consensus 372 --------------~~TIll~G~t~~~l~e~k~~i~dal~~~~~~l~~~~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~ 437 (562)
.+||+|||+|+.+++|++|+++||++++++++++| +|||||++|++++++|+++ ...++++|++
T Consensus 361 ~~~l~eRi~~l~g~~~tI~irG~t~~~l~E~er~i~Dal~~vk~al~~g-~VpGGGa~e~~~s~~L~~~-~~~~~~~~~~ 438 (542)
T PRK00013 361 REKLQERLAKLAGGVAVIKVGAATEVEMKEKKDRVEDALHATRAAVEEG-IVPGGGVALLRAAPALEAL-KGLNGDEATG 438 (542)
T ss_pred HHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-cccCcHHHHHHHHHHHHHh-cCCChHHHHH
Confidence 78999999999999999999999999999999998 9999999999999999988 6788999999
Q ss_pred HHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHhccCCCCCCCceeEecCCCCccccccCCcccchHHHHHHHHHHHHHHH
Q 008527 438 INSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAAC 517 (562)
Q Consensus 438 ~~~~a~AL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~ 517 (562)
+++|++||+.||++|++|||+|+.+++.+|+..| . +++|+|+.+|+++||++.|||||+.||.++|+.|+++|+
T Consensus 439 i~~~a~Al~~ip~~La~NaG~d~~~vl~~l~~~~-~-----~~~G~d~~~g~~~d~~~~gI~Dp~~vk~~al~~A~~~a~ 512 (542)
T PRK00013 439 INIVLRALEAPLRQIAENAGLEGSVVVEKVKNGK-G-----KGYGYNAATGEYVDMIEAGIIDPTKVTRSALQNAASVAG 512 (542)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhc-C-----CCEeEeCCCCceeehhhccCeecHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999887 3 679999999999999999999999999999999999999
Q ss_pred HHHchhHhhcCCCcC
Q 008527 518 LILSVDETVKNPKVV 532 (562)
Q Consensus 518 ~iL~iD~iI~~~~~~ 532 (562)
+||++|++|..+|.+
T Consensus 513 ~iL~id~iI~~~~~~ 527 (542)
T PRK00013 513 LLLTTEAVVADKPEK 527 (542)
T ss_pred HHHHHHHHHhcCCcc
Confidence 999999999987754
No 28
>PTZ00114 Heat shock protein 60; Provisional
Probab=100.00 E-value=4.8e-90 Score=753.08 Aligned_cols=468 Identities=23% Similarity=0.369 Sum_probs=430.1
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhhccCCCCCceeeeCCCCCeEEecCHHHHhccccccCh----HHHHHHHHHHhcccc
Q 008527 17 DTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHP----AAKILVDIAKSQDSE 92 (562)
Q Consensus 17 ~~~~g~~~~~~n~~~~~~l~~iv~sslGP~G~~kmI~~~~g~~~iTnDG~tIl~~l~~~hP----~akll~~~~~~~~~~ 92 (562)
+..+|.+++..|+++|..++++|+|||||+||+|||+++.|+++|||||+||+++|+++|| +++|++++|++|+++
T Consensus 16 ~~~~~~~a~~~~i~~~~~la~~v~tTLGP~G~~kmi~~~~g~~~ITnDG~TIlk~i~~~~p~~~~~a~ll~~~a~~qd~e 95 (555)
T PTZ00114 16 EIRFGDEARQSLLKGIERLADAVAVTLGPKGRNVIIEQEYGSPKITKDGVTVAKAIEFSDRFENVGAQLIRQVASKTNDK 95 (555)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhccCCCCCCcEEEECCCCCeEEeeChHHHHHhcCcCCcchhHHHHHHHHHHHhhccc
Confidence 5778899999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred cCCchhHHHHHHHHHHHHHHHhHHCCCChhhHHHHHHHHHHHHHHHHHhhceeccCCChHHHHHHHHHHHHHhhccCccC
Q 008527 93 VGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIG 172 (562)
Q Consensus 93 ~GDGTtt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~v~~~~~~~~~~~l~~ia~tsl~sk~~~ 172 (562)
+||||||+|+|+++||+++.+++++|+||..|++||+.|++.+++.|+++++|++ + .+.+.++|+|+++
T Consensus 96 vGDGTTtvvvLa~~LL~~a~~li~~GihP~~I~~G~~~A~~~~~~~L~~~s~~v~--~----~~~l~~va~ts~~----- 164 (555)
T PTZ00114 96 AGDGTTTATILARAIFREGCKAVAAGLNPMDLKRGIDLAVKVVLESLKEQSRPVK--T----KEDILNVATISAN----- 164 (555)
T ss_pred cCCcccHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhccCCC--C----HHHHHHHHHHHcC-----
Confidence 9999999999999999999999999999999999999999999999999999986 2 4689999999854
Q ss_pred chhHHHHHHHHHHHHHhCCCCCCcceeEEEecCCCcccc-eeEEEEEEecccCCCcc----cCCcceecCceEEEeeccc
Q 008527 173 GEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTMRDS-FLVNGVAFKKTFSYAGF----EQQPKKFLNPKILLLNIEL 247 (562)
Q Consensus 173 ~~~~~ls~li~~Av~~v~~~~d~~~I~i~~i~gg~~~ds-~li~Giv~~~~~~~~~~----~~~~~~l~n~kIll~~~~L 247 (562)
+++.+++++++|+..++++ + .|.+..|++++|+ ++++|++|+++|.+|+| +.|+++++||+|+++|++|
T Consensus 165 -~~~~l~~li~eAv~~vg~~---g--~I~~~~g~~~~ds~~~v~G~~~~~g~~~~~~~~~~~~~~~~l~~~~Ili~d~~L 238 (555)
T PTZ00114 165 -GDVEIGSLIADAMDKVGKD---G--TITVEDGKTLEDELEVVEGMSFDRGYISPYFVTNEKTQKVELENPLILVTDKKI 238 (555)
T ss_pred -ChHHHHHHHHHHHHHhCcC---C--cEEEcCCCCccceEEEEEEEEEeccccccccccccccCeEEecCCEEEEEcCCC
Confidence 4789999999999999864 1 2566789999998 79999999999999998 4688999999999999998
Q ss_pred cccccccCceEEecCHHhHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcccHHHHHHHHhcC------ccccCC-----
Q 008527 248 ELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRD------IFCAGR----- 316 (562)
Q Consensus 248 e~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lIi~~~~v~~~al~~l~~~~------I~~v~~----- 316 (562)
+ ++++ +.++++++++.+++|+|++++|++.++++|..++ |.++++
T Consensus 239 ~-------------~~~~-----------i~~~le~i~~~~~~llI~~~~i~~~al~~L~~n~~~g~~~i~avk~~~~g~ 294 (555)
T PTZ00114 239 S-------------SIQS-----------ILPILEHAVKNKRPLLIIAEDVEGEALQTLIINKLRGGLKVCAVKAPGFGD 294 (555)
T ss_pred C-------------CHHH-----------HHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHhCCCCceEEEEEecCCCCc
Confidence 5 2333 6788899999999999999999999999998775 888855
Q ss_pred CChHHHHHHHHHhCCeEeccc------CCCCCCcccccceEEEEEECCeEEEEEEcCC----------------------
Q 008527 317 VAEEDLLRVAAATGGTVQTSV------NNVVDEVLGTCEHFEERQVGNERFNIFSGCP---------------------- 368 (562)
Q Consensus 317 v~~~~Le~Ia~~TGa~ii~sl------~~l~~~~lG~~~~v~~~~ig~~~~~~~~g~~---------------------- 368 (562)
+++++|+|||.+|||+++++. ++++++++|+|++|++.+ +++++++|+.
T Consensus 295 ~~~~~l~~la~~tG~~~i~~~~~~~~l~~~~~~~LG~a~~v~~~~---~~~~~~~~~~~~~~i~~r~~~l~~~~~~~~~~ 371 (555)
T PTZ00114 295 NRKDILQDIAVLTGATVVSEDNVGLKLDDFDPSMLGSAKKVTVTK---DETVILTGGGDKAEIKERVELLRSQIERTTSE 371 (555)
T ss_pred chHHHHHHHHHHhCCEEecccccccCcccCCHHHcCCCceEEEEe---ceEEEEeCCCcHHHHHHHHHHHHHHHHhcCCH
Confidence 788999999999999999997 788888999999999877 5666776665
Q ss_pred -------------CCceEEEEeecCCHHHHHHHHHHHHHHHHHHHHHHhCCceeccCCccHHHHHHHHHHHhh--hccch
Q 008527 369 -------------SGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESR--AIAGK 433 (562)
Q Consensus 369 -------------~~~~~TIll~G~t~~~l~e~k~~i~dal~~~~~~l~~~~vvpGGG~~E~~l~~~L~~~~~--~~~~~ 433 (562)
+++.+||+|||+|+.+++|++|+++||++++++++++| +|||||++|++++.+|++++. ..+++
T Consensus 372 ~~~~~l~eR~~~l~~~~~tI~i~G~t~~~l~E~~r~i~Dal~~~k~a~~~g-vVpGGGa~e~~~s~~L~~~~~~~~~~~~ 450 (555)
T PTZ00114 372 YDKEKLKERLAKLSGGVAVIKVGGASEVEVNEKKDRIEDALNATRAAVEEG-IVPGGGVALLRASKLLDKLEEDNELTPD 450 (555)
T ss_pred HHHHHHHHHHHhcCCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcC-cccCCcHHHHHHHHHHHHHhhccCCchH
Confidence 56799999999999999999999999999999999988 999999999999999999875 57899
Q ss_pred HHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHhccCCCCCCCceeEecCCCCccccccCCcccchHHHHHHHHHHH
Q 008527 434 SQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAAT 513 (562)
Q Consensus 434 ~~~~~~~~a~AL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~l~~A~ 513 (562)
+++++++|++||+.||++|++|||+|+.+++.+|+. . ++ +++|+|+.+|++.||++.|||||+.||.++|+.|+
T Consensus 451 ~~~~i~~~a~AL~~ip~~La~NaG~d~~~v~~~l~~---~--~~-~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~ 524 (555)
T PTZ00114 451 QRTGVKIVRNALRLPTKQIAENAGVEGAVVVEKILE---K--KD-PSFGYDAQTGEYVNMFEAGIIDPTKVVRSALVDAA 524 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHh---c--CC-CCEeEeCCCCcEeeHHhCCCEeCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999976 2 44 78999999999999999999999999999999999
Q ss_pred HHHHHHHchhHhhcCCCcCCCc
Q 008527 514 EAACLILSVDETVKNPKVVCKQ 535 (562)
Q Consensus 514 e~a~~iL~iD~iI~~~~~~~~~ 535 (562)
++|++||+||++|...|...+.
T Consensus 525 ~~A~~iL~id~iI~~~~~~~~~ 546 (555)
T PTZ00114 525 SVASLMLTTEAAIVDLPKEKKK 546 (555)
T ss_pred HHHHHHHhHHHHHHhCCccccc
Confidence 9999999999999987765443
No 29
>PRK12851 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=9.8e-90 Score=747.67 Aligned_cols=464 Identities=24% Similarity=0.363 Sum_probs=427.0
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhhccCCCCCceeeeCCCCCeEEecCHHHHhccccccCh----HHHHHHHHHHhcccc
Q 008527 17 DTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHP----AAKILVDIAKSQDSE 92 (562)
Q Consensus 17 ~~~~g~~~~~~n~~~~~~l~~iv~sslGP~G~~kmI~~~~g~~~iTnDG~tIl~~l~~~hP----~akll~~~~~~~~~~ 92 (562)
+..+|.+++..|+++++.++++|+|||||+||+|||+++.|+++|||||+||+++|+++|| +++|++++|++|+++
T Consensus 5 ~~~~~~~a~~~~~~~~~~la~~v~tTlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~~~~~akll~~~a~~qd~e 84 (541)
T PRK12851 5 EVKFHVEAREKMLRGVNILADAVKVTLGPKGRNVVIDKSFGAPTITNDGVTIAKEIELEDKFENMGAQMVREVASKTNDV 84 (541)
T ss_pred eecccHHHHHHHHHHHHHHHHHHhcCCCCCCCCEEEECCCCCeeEecCHHHHHHHccCCCchhhHHHHHHHHHHHhhhHh
Confidence 4567889999999999999999999999999999999999999999999999999999999 899999999999999
Q ss_pred cCCchhHHHHHHHHHHHHHHHhHHCCCChhhHHHHHHHHHHHHHHHHHhhceeccCCChHHHHHHHHHHHHHhhccCccC
Q 008527 93 VGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIG 172 (562)
Q Consensus 93 ~GDGTtt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~v~~~~~~~~~~~l~~ia~tsl~sk~~~ 172 (562)
+||||||+++|+++||+++.+++++|+||..|++||+.|++.+++.|+++++|++. .+.+.++|++++
T Consensus 85 ~GDGTTtvviLa~~LL~~a~~li~~Gihp~~I~~G~~~a~~~~~~~L~~~s~~~~~------~~~l~~va~~s~------ 152 (541)
T PRK12851 85 AGDGTTTATVLAQAIVREGAKAVAAGANPMDLKRGIDRAVAAVVEELKANARPVTT------NAEIAQVATISA------ 152 (541)
T ss_pred hCCCccHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhccCCCC------HHHHHHHHHHhc------
Confidence 99999999999999999999999999999999999999999999999999998862 467999998874
Q ss_pred chhHHHHHHHHHHHHHhCCCCCCcceeEEEecCCCcccceeEEEEEEecccCCCccc----CCcceecCceEEEeecccc
Q 008527 173 GEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFE----QQPKKFLNPKILLLNIELE 248 (562)
Q Consensus 173 ~~~~~ls~li~~Av~~v~~~~d~~~I~i~~i~gg~~~ds~li~Giv~~~~~~~~~~~----~~~~~l~n~kIll~~~~Le 248 (562)
++++.+++++++|+..++++ +.|.+.+.. +...++++++|++|+++|.+|+|. +||++++||+|+++|++++
T Consensus 153 ~~~~~l~~lv~~Av~~vg~~---g~i~i~~~~-~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~Ilv~d~~i~ 228 (541)
T PRK12851 153 NGDAEIGRLVAEAMEKVGNE---GVITVEESK-TAETELEVVEGMQFDRGYLSPYFVTDADKMEAELEDPYILIHEKKIS 228 (541)
T ss_pred cChHHHHHHHHHHHHHhccc---CceEEEEcc-CCCcceEEEEEEEecCCccccccccCCCCCeEEecccEEEEEcCCcC
Confidence 57899999999999999764 355665544 556789999999999999999873 4889999999999999852
Q ss_pred ccccccCceEEecCHHhHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcccHHHHHHHHhcCc------cccC-----CC
Q 008527 249 LKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDI------FCAG-----RV 317 (562)
Q Consensus 249 ~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lIi~~~~v~~~al~~l~~~~I------~~v~-----~v 317 (562)
+.++ +.++++++.+.+++|||++++|++.++++|.+++| ++++ ++
T Consensus 229 -------------~~~~-----------i~~~l~~i~~~~~~lvi~~~~I~~~al~~l~~n~i~g~~~i~av~~p~~~~~ 284 (541)
T PRK12851 229 -------------NLQD-----------LLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDR 284 (541)
T ss_pred -------------cHHH-----------HHHHHHHHHHhCcCEEEECCCCChHHHHHHHHcCCcCceeEEEEecCccccc
Confidence 2222 67889999999999999999999999999999987 5555 59
Q ss_pred ChHHHHHHHHHhCCeEec-----ccCCCCCCcccccceEEEEEECCeEEEEEEcCCCCc---------------------
Q 008527 318 AEEDLLRVAAATGGTVQT-----SVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGR--------------------- 371 (562)
Q Consensus 318 ~~~~Le~Ia~~TGa~ii~-----sl~~l~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~~--------------------- 371 (562)
++++|+|||.+|||++++ ++++++++++|+|+.+++.+ ++++++.|+.++.
T Consensus 285 ~~~~l~~ia~~tGa~~i~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~ 361 (541)
T PRK12851 285 RKAMLEDIAILTGGTVISEDLGIKLENVTLEQLGRAKKVVVEK---ENTTIIDGAGSKTEIEGRVAQIRAQIEETTSDYD 361 (541)
T ss_pred cHhHHHHHHHHhCCEEeccCCCCCcCcCCHHHcCCccEEEEEc---ceEEEEcCCCCHHHHHHHHHHHHHHHHhcCCHHH
Confidence 999999999999999999 68889888999999999866 8899999886653
Q ss_pred --------------eEEEEeecCCHHHHHHHHHHHHHHHHHHHHHHhCCceeccCCccHHHHHHHHHHHhhhccchHHHH
Q 008527 372 --------------TATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFF 437 (562)
Q Consensus 372 --------------~~TIll~G~t~~~l~e~k~~i~dal~~~~~~l~~~~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~ 437 (562)
.+||+|||+|+.+++|++|+++||++++++++++| +|||||++|++++.+|++++.. +++++++
T Consensus 362 ~~~l~~ri~~l~g~~~tI~irG~t~~~l~E~er~i~DAl~a~~~al~~g-~VpGGGa~e~~~s~~L~~~~~~-~~~~~~~ 439 (541)
T PRK12851 362 REKLQERLAKLAGGVAVIRVGASTEVEVKEKKDRVDDALHATRAAVEEG-IVPGGGVALLRAVKALDKLETA-NGDQRTG 439 (541)
T ss_pred HHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-cccCchHHHHHHHHHHHHHhcC-CcHHHHH
Confidence 88999999999999999999999999999999998 9999999999999999998876 8899999
Q ss_pred HHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHhccCCCCCCCceeEecCCCCccccccCCcccchHHHHHHHHHHHHHHH
Q 008527 438 INSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAAC 517 (562)
Q Consensus 438 ~~~~a~AL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~ 517 (562)
+++|++||+.||++|++|||+|+.+++.+|+..| .++|+|+.+|+++||++.|||||+.+|.++|+.|+|+|+
T Consensus 440 ~~~~a~AL~~ip~~La~NaG~d~~~vl~~l~~~~-------~~~G~d~~~g~~~d~~~~GIiDp~~vk~~al~~A~e~A~ 512 (541)
T PRK12851 440 VEIVRRALEAPVRQIAENAGAEGSVVVGKLREKP-------GGYGFNAATNEYGDLYAQGVIDPVKVVRTALQNAASVAG 512 (541)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhC-------CCeeeeCCCCCccchhhccCEecHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998765 568999999999999999999999999999999999999
Q ss_pred HHHchhHhhcCCCcC
Q 008527 518 LILSVDETVKNPKVV 532 (562)
Q Consensus 518 ~iL~iD~iI~~~~~~ 532 (562)
+||+||++|..+|.+
T Consensus 513 ~iL~id~iI~~~~~~ 527 (541)
T PRK12851 513 LLLTTEAMVAEKPKK 527 (541)
T ss_pred HHHhHHHhhhcCCCC
Confidence 999999999987654
No 30
>PRK12850 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=5.6e-89 Score=742.23 Aligned_cols=464 Identities=23% Similarity=0.365 Sum_probs=423.9
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhhccCCCCCceeeeCCCCCeEEecCHHHHhccccccChH----HHHHHHHHHhcccc
Q 008527 17 DTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPA----AKILVDIAKSQDSE 92 (562)
Q Consensus 17 ~~~~g~~~~~~n~~~~~~l~~iv~sslGP~G~~kmI~~~~g~~~iTnDG~tIl~~l~~~hP~----akll~~~~~~~~~~ 92 (562)
...+|.+++..|++||..++++++|||||+||+|||+++.|+++|||||+||+++|+++||+ ++|++++|++|+++
T Consensus 5 ~~~~~~~a~~~~~~~~~~la~~v~tTLGP~G~~kmi~~~~G~~~ITnDG~tIlk~i~i~hp~~~~ga~ll~~~a~~qd~e 84 (544)
T PRK12850 5 EIRFSTDARDRLLRGVNILANAVKVTLGPKGRNVVLEKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVKEVASKTNDL 84 (544)
T ss_pred eecccHHHHHHHHHHHHHHHHHHhCCcCCCCCCEEEECCCCCeeEeccHHHHHHHhcCCChhhhHHHHHHHHHHhhhcch
Confidence 45678899999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred cCCchhHHHHHHHHHHHHHHHhHHCCCChhhHHHHHHHHHHHHHHHHHhhceeccCCChHHHHHHHHHHHHHhhccCccC
Q 008527 93 VGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIG 172 (562)
Q Consensus 93 ~GDGTtt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~v~~~~~~~~~~~l~~ia~tsl~sk~~~ 172 (562)
+||||||+++|+++||+++.+++++|+||..|++||+.|++.+++.|+++++|++ + .+.|.++++++++
T Consensus 85 ~GDGTTt~viLa~~LL~~a~~li~~GihP~~I~~G~~~a~~~~~~~L~~~s~~v~--~----~~~l~~va~~s~~----- 153 (544)
T PRK12850 85 AGDGTTTATVLAQAIVREGAKLVAAGMNPMDLKRGIDLAVAAVVDELKKIAKKVT--S----SKEIAQVATISAN----- 153 (544)
T ss_pred hcCCcchHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHHhccCCC--C----HHHHHHHHHHhcC-----
Confidence 9999999999999999999999999999999999999999999999999999886 2 4689999999854
Q ss_pred chhHHHHHHHHHHHHHhCCCCCCcceeEEEecCCCcccceeEEEEEEecccCCCccc----CCcceecCceEEEeecccc
Q 008527 173 GEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFE----QQPKKFLNPKILLLNIELE 248 (562)
Q Consensus 173 ~~~~~ls~li~~Av~~v~~~~d~~~I~i~~i~gg~~~ds~li~Giv~~~~~~~~~~~----~~~~~l~n~kIll~~~~Le 248 (562)
.++.+++++++|+..++++ +.|.+.... ..-.++++++|++|+++|.+|+|. +|+++++||+|+++|+.+
T Consensus 154 -~~~~l~~lv~eAv~~vg~~---g~i~v~~~~-~~g~~~~~v~G~~~~~g~~~p~~~~~~~~~~~~~~n~~Ill~d~~i- 227 (544)
T PRK12850 154 -GDESIGEMIAEAMDKVGKE---GVITVEEAK-TLGTELDVVEGMQFDRGYLSPYFVTNPEKMRAELEDPYILLHEKKI- 227 (544)
T ss_pred -CHHHHHHHHHHHHHHhccc---CceeeEEcc-ccCcceEEEEeEEecCccCcCccccccccCeEEEeCCEEEEEeccc-
Confidence 4789999999999999754 233333221 112678999999999999999983 578999999999999964
Q ss_pred ccccccCceEEecCHHhHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcccHHHHHHHHhcCc------cccCC-----C
Q 008527 249 LKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDI------FCAGR-----V 317 (562)
Q Consensus 249 ~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lIi~~~~v~~~al~~l~~~~I------~~v~~-----v 317 (562)
++.++ +.++++++.+.+++|||++++|++.++++|.+++| +++++ +
T Consensus 228 ------------~~~~~-----------i~~~l~~i~~~g~~lvI~~~~I~d~al~~l~~n~i~~~~~~~avk~p~~g~~ 284 (544)
T PRK12850 228 ------------SNLQD-----------LLPILEAVVQSGRPLLIIAEDVEGEALATLVVNKLRGGLKSVAVKAPGFGDR 284 (544)
T ss_pred ------------CCHHH-----------HHHHHHHHHHhCCCEEEECCCCChHHHHHHHHcCCcccceEEEEeCCCcCcc
Confidence 23222 78889999999999999999999999999999998 77666 9
Q ss_pred ChHHHHHHHHHhCCeEec-----ccCCCCCCcccccceEEEEEECCeEEEEEEcCCCCc---------------------
Q 008527 318 AEEDLLRVAAATGGTVQT-----SVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGR--------------------- 371 (562)
Q Consensus 318 ~~~~Le~Ia~~TGa~ii~-----sl~~l~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~~--------------------- 371 (562)
++++|+|||++|||++++ ++++++++++|+|+.+++.+ +++++|+|+.+++
T Consensus 285 ~~~~le~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~i~g~~~~~~i~~ri~~l~~~~~~~~~~~~ 361 (544)
T PRK12850 285 RKAMLEDIAVLTGGQVISEDLGIKLENVTLDMLGRAKRVLITK---ENTTIIDGAGDKKNIEARVKQIRAQIEETTSDYD 361 (544)
T ss_pred cHHHHHHHHHHhCCEEeccccCCCcccCCHHHcCCCcEEEEEe---eeEEEEeCCCCHHHHHHHHHHHHHHHHhcccHHH
Confidence 999999999999999999 68999988999999998765 7899999887643
Q ss_pred --------------eEEEEeecCCHHHHHHHHHHHHHHHHHHHHHHhCCceeccCCccHHHHHHHHHHHhhhccchHHHH
Q 008527 372 --------------TATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFF 437 (562)
Q Consensus 372 --------------~~TIll~G~t~~~l~e~k~~i~dal~~~~~~l~~~~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~ 437 (562)
.+||+|||+|+.+++|++|+++||++++++++++| +|||||++|++++..|+++ ...++++|++
T Consensus 362 ~~~l~eR~~~l~~~~~tI~irG~t~~~l~E~er~i~DAl~~~k~a~~~g-~VpGGGa~e~~~s~~L~~~-~~~~~~~~~~ 439 (544)
T PRK12850 362 REKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVDDALHATRAAVEEG-IVPGGGVALLRARSALRGL-KGANADETAG 439 (544)
T ss_pred HHHHHHHHHHhcCCeEEEEECCCcHHHHHHHHHHHHHHHHHHHHHHhcC-CccCCcHHHHHHHHHHHhc-cCCChHHHHH
Confidence 89999999999999999999999999999999997 9999999999999999998 6778899999
Q ss_pred HHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHhccCCCCCCCceeEecCCCCccccccCCcccchHHHHHHHHHHHHHHH
Q 008527 438 INSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAAC 517 (562)
Q Consensus 438 ~~~~a~AL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~ 517 (562)
+++|++||+.||++|++|||+|+.+++.+|+..| .++|+|+.+|++.||++.|||||+.+|.++|+.|+++|+
T Consensus 440 i~~~a~Al~~ip~~La~NaG~d~~~v~~~l~~~~-------~~~G~d~~~g~~~d~~~~gI~Dp~~vk~~al~~A~~~a~ 512 (544)
T PRK12850 440 IDIVRRALEEPLRQIATNAGFEGSVVVGKVAELP-------GNFGFNAQTGEYGDMVEAGIIDPAKVTRTALQDAASIAA 512 (544)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhC-------CCcceeCCCCcccchhhccCcccHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998764 568999999999999999999999999999999999999
Q ss_pred HHHchhHhhcCCCcC
Q 008527 518 LILSVDETVKNPKVV 532 (562)
Q Consensus 518 ~iL~iD~iI~~~~~~ 532 (562)
+||++|++|..+|..
T Consensus 513 ~iL~id~iI~~~~~~ 527 (544)
T PRK12850 513 LLITTEAMVAEAPKK 527 (544)
T ss_pred HHHhHHHhhccCCCC
Confidence 999999999987654
No 31
>KOG0364 consensus Chaperonin complex component, TCP-1 gamma subunit (CCT3) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.9e-92 Score=698.30 Aligned_cols=518 Identities=31% Similarity=0.572 Sum_probs=499.5
Q ss_pred CchhHhhccccccccccHHHHHHHHHHHHHHHHHhhhccCCCCCceeeeCCCCCeEEecCHHHHhccccccChHHHHHHH
Q 008527 5 MQPQIILLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVD 84 (562)
Q Consensus 5 ~~~~~~~~~~~~~~~~g~~~~~~n~~~~~~l~~iv~sslGP~G~~kmI~~~~g~~~iTnDG~tIl~~l~~~hP~akll~~ 84 (562)
||.|+..++.+..++.|..++..|++|+++++|++++|+||+.|.||+.++.|.+..||||..|+++|++.||+|+-+.+
T Consensus 1 m~apv~~~~~~~~re~g~kvq~~ni~aak~iadvirtclgp~am~kmlld~~g~i~~tndg~ailrei~Vahpaaksmie 80 (527)
T KOG0364|consen 1 MQAPVLVLSKNTKRESGRKVQLGNIQAAKAIADVIRTCLGPRAMLKMLLDPMGGIVLTNDGNAILREIDVAHPAAKSMIE 80 (527)
T ss_pred CCCceeecccccCcCccccccccchhhHHHHHHHHHHhcChHHHHHHhhccCCceEEecCcHHHHHHHhhcCcchhhHhh
Confidence 57788788888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcccccCCchhHHHHHHHHHHHHHHHhHHCCCChhhHHHHHHHHHHHHHHHHHhhceeccCCChHHHHHHHHHHHHH
Q 008527 85 IAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAAT 164 (562)
Q Consensus 85 ~~~~~~~~~GDGTtt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~v~~~~~~~~~~~l~~ia~t 164 (562)
.+.+||+++||||||+++|++++|.++..++++++||+.|+++|.+|++.++..+++.++|++..+ ...+..+..+
T Consensus 81 l~rtqdeevgdgttsvi~lagE~L~~~~~~l~~~~Hp~~i~ka~~~aled~~~~~~~~~~~~d~~~----~~km~~vi~~ 156 (527)
T KOG0364|consen 81 LSRTQDEEVGDGTTSVIILAGEMLNVAEPFLEEGIHPTVIIKAYIKALEDNIRALDKISIPVDVKD----QAKMLRVINS 156 (527)
T ss_pred hhhcccccccCCceeeeeehHHHhhhcchhhhcCcchHHHHHHHHHHHHHHHHHHHhhcccCCccc----HHHHHhhhhh
Confidence 999999999999999999999999999999999999999999999999999999999999999876 6789999999
Q ss_pred hhccCccCchhHHHHHHHHHHHHHhCCCC----C-CcceeEEEecCCCcccceeEEEEEEecccCCCcccCCcceecCce
Q 008527 165 TLSSKLIGGEKEFFASMVVDAVGAIGDGD----R-LNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPK 239 (562)
Q Consensus 165 sl~sk~~~~~~~~ls~li~~Av~~v~~~~----d-~~~I~i~~i~gg~~~ds~li~Giv~~~~~~~~~~~~~~~~l~n~k 239 (562)
++.+|+.+.|++..++++.+|+.+++.++ | ..|.++.||+||.+++|++++|+.+.+...||. |.+.++||+
T Consensus 157 ~v~tk~~~~~~~~~~~lal~avk~V~~~~g~e~dik~y~kveKvpgg~l~~s~vl~Gv~~nkdv~Hpk---mrr~Ienpr 233 (527)
T KOG0364|consen 157 SVGTKFNSRWSDLICNLALDAVKTVGVENGREIDIKRYAKVEKVPGGLLEDSCVLKGVMINKDVTHPK---MRRAIENPR 233 (527)
T ss_pred hhhhhhhhhhcchhhhHHHHHHHHhhhccCceechhhhccccccCcccccccceecceeeccccCcHH---HHHHhhcCc
Confidence 99999999999999999999999998763 4 577899999999999999999999999999986 468999999
Q ss_pred EEEeeccccccccccCceEEecCHHhHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcccHHHHHHHHhcCccccCCCCh
Q 008527 240 ILLLNIELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAE 319 (562)
Q Consensus 240 Ill~~~~Le~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lIi~~~~v~~~al~~l~~~~I~~v~~v~~ 319 (562)
|+|+||+|+|.+.++++++.+...+++...++.|++++..+++.+....|+||+++++++|++++||.+.||++++++++
T Consensus 234 ivLlD~~LeykkGeSqtnve~~~eed~~r~Lqieee~v~~mc~~Ii~v~pDlVitekG~sdla~hyl~k~~iT~~rr~rK 313 (527)
T KOG0364|consen 234 IVLLDCPLEYKKGESQTNVEIVKEEDFTRILQIEEEQVQAMCEVIIAVKPDLVITEKGVSDLAQHYLLKANITAIRRLRK 313 (527)
T ss_pred EEEecCCccCCCCccccceeeeechhHHHHHHhhHHHHHHHHHHHHeecccEEEeccchhHHHHHHHHhcCchhhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCeEecccCCCCCCcccc-cceEEEEEECCeEEEEEEcCCCCceEEEEeecCCHHHHHHHHHHHHHHHHH
Q 008527 320 EDLLRVAAATGGTVQTSVNNVVDEVLGT-CEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMI 398 (562)
Q Consensus 320 ~~Le~Ia~~TGa~ii~sl~~l~~~~lG~-~~~v~~~~ig~~~~~~~~g~~~~~~~TIll~G~t~~~l~e~k~~i~dal~~ 398 (562)
.|-.|+++++||+++++.+++.+.+.|+ |+.|+..++|+++|++|..|..|+.|||++|||+..+++|.+|.++||+.+
T Consensus 314 tDn~ria~acga~iv~rpedl~e~dvGt~agLf~~kK~gdeyf~f~~~Ck~pkaCtillrg~skdil~e~ernlqda~~v 393 (527)
T KOG0364|consen 314 TDNNRIARACGARIVNRPEDLPERDVGTGAGLFEVKKIGDEYFTFFTDCKEPKACTILLRGPSKDILNEVERNLQDAMGV 393 (527)
T ss_pred cccchhhhhcCceeccChhhCchhccCcccceeeeeccCchhhhhhhhcCCCcceEEEeccCchhHHHHHHHHhhhHHHH
Confidence 9999999999999999999999999997 889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCceeccCCccHHHHHHHHHHHhhhccchHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHhccCCCCCC
Q 008527 399 VRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEG 478 (562)
Q Consensus 399 ~~~~l~~~~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~ 478 (562)
.|+.+-+|+++||||++||.+|+.|.+.+...++-+++.+.++|.||+.+||+|++|+|.+++..+..++..|.. |.
T Consensus 394 arn~ii~PklvPGGGAtEMAvs~~L~qksa~~~GVekwPY~Ava~AlEviPrtliqncGan~Ir~lTalr~kh~~--G~- 470 (527)
T KOG0364|consen 394 ARNVIINPKLVPGGGATEMAVSHELRQKSALMTGVEKWPYGAVAGALEVIPRTLIQNCGANPIRALTALRAKHKE--GQ- 470 (527)
T ss_pred HHHhccCCcccCCccHHHHHHHHHHHHHHhhccchhccchhhhhcCceeccHHHHhhcCccHHHHHHHHHHHhcC--cc-
Confidence 999999999999999999999999999888889999999999999999999999999999999999999999987 77
Q ss_pred CceeEecCCCCccccccCCcccchHHHHHHHHHHHHHHHHHHchhHhhcCCCcC
Q 008527 479 APYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPKVV 532 (562)
Q Consensus 479 ~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~iI~~~~~~ 532 (562)
..+|+|..+|.++||.+.++|||..+|.|..++|++.++++||||+++...+..
T Consensus 471 ~~~gi~g~tg~iVDm~~~~iwep~~vK~Q~~ktavesa~~LLRIddIvsg~kk~ 524 (527)
T KOG0364|consen 471 RVWGIDGETGVIVDMVELGIWEPEAVKLQTGKTAVESACLLLRIDDIVSGKKKR 524 (527)
T ss_pred eeecccCceeeEeeeeeccccchhhhhhhhhhHHHHHHHHHHhhhceeeeeeec
Confidence 889999999999999999999999999999999999999999999999876554
No 32
>cd03344 GroEL GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=6.8e-89 Score=738.64 Aligned_cols=458 Identities=24% Similarity=0.397 Sum_probs=424.2
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhhccCCCCCceeeeCCCCCeEEecCHHHHhccccccCh----HHHHHHHHHHhcccc
Q 008527 17 DTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHP----AAKILVDIAKSQDSE 92 (562)
Q Consensus 17 ~~~~g~~~~~~n~~~~~~l~~iv~sslGP~G~~kmI~~~~g~~~iTnDG~tIl~~l~~~hP----~akll~~~~~~~~~~ 92 (562)
+..+|.+++..|+++|+.++++++|||||+|++|||+++.|+++|||||+||+++|+++|| +++|+++++++|+++
T Consensus 2 ~~~~g~~a~~~~i~~~~~l~~~v~ttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hp~~~~~a~ll~~~a~~qd~e 81 (520)
T cd03344 2 DIKFGEEARKALLRGVNKLADAVKVTLGPKGRNVVIEKSFGSPKITKDGVTVAKEIELEDPFENMGAQLVKEVASKTNDV 81 (520)
T ss_pred cccchHHHHHHHHHHHHHHHHHHhCCcCCCCCcEEEECCCCCeEEEecHHHHHHHcccCCcchhHHHHHHHHHHhhhccc
Confidence 3568899999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred cCCchhHHHHHHHHHHHHHHHhHHCCCChhhHHHHHHHHHHHHHHHHHhhceeccCCChHHHHHHHHHHHHHhhccCccC
Q 008527 93 VGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIG 172 (562)
Q Consensus 93 ~GDGTtt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~v~~~~~~~~~~~l~~ia~tsl~sk~~~ 172 (562)
+||||||+++|+++||+++.+++++|+||..|++||+.|.+.+++.|+++++|++ + .+.+.++|+|+++
T Consensus 82 ~GDGTTtvviLa~~Ll~~~~~li~~gi~p~~I~~G~~~a~~~~~~~L~~~~~~i~--~----~~~l~~va~ts~~----- 150 (520)
T cd03344 82 AGDGTTTATVLARAIIKEGLKAVAAGANPMDLKRGIEKAVEAVVEELKKLSKPVK--T----KEEIAQVATISAN----- 150 (520)
T ss_pred cCCCcchHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHhccCCC--C----HHHHHHHHHHhcC-----
Confidence 9999999999999999999999999999999999999999999999999999986 3 5789999999975
Q ss_pred chhHHHHHHHHHHHHHhCCCCCCcceeEEEecCCCccc-ceeEEEEEEecccCCCccc----CCcceecCceEEEeeccc
Q 008527 173 GEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTMRD-SFLVNGVAFKKTFSYAGFE----QQPKKFLNPKILLLNIEL 247 (562)
Q Consensus 173 ~~~~~ls~li~~Av~~v~~~~d~~~I~i~~i~gg~~~d-s~li~Giv~~~~~~~~~~~----~~~~~l~n~kIll~~~~L 247 (562)
.++++++++++|+..++++ +.|.+ ..|++.+| +++++|++|++++.+|+|. +|+++++||+|+++|++|
T Consensus 151 -~~~~l~~lv~~A~~~v~~~---~~i~v--~~g~~~~d~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~l 224 (520)
T cd03344 151 -GDEEIGELIAEAMEKVGKD---GVITV--EEGKTLETELEVVEGMQFDRGYLSPYFVTDPEKMEVELENPYILLTDKKI 224 (520)
T ss_pred -ChHHHHHHHHHHHHHhccC---CcEEE--EeCCCcceeEEEEeeEEecCCCCCCccccCcccCeEEeeCCEEEEECCCC
Confidence 4789999999999999754 33433 57888888 7999999999999999983 356789999999999986
Q ss_pred cccccccCceEEecCHHhHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcccHHHHHHHHhcCc------ccc-----CC
Q 008527 248 ELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDI------FCA-----GR 316 (562)
Q Consensus 248 e~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lIi~~~~v~~~al~~l~~~~I------~~v-----~~ 316 (562)
+++++ +.++++++.+.+++|||++++|++.++++|.+++| +++ ++
T Consensus 225 -------------~~~~~-----------l~~~l~~i~~~~~~lvi~~~~i~~~al~~l~~~~i~~~~~v~avk~~~~~~ 280 (520)
T cd03344 225 -------------SSIQE-----------LLPILELVAKAGRPLLIIAEDVEGEALATLVVNKLRGGLKVCAVKAPGFGD 280 (520)
T ss_pred -------------CCHHH-----------HHHHHHHHHhhCCCEEEEcCCCCHHHHHHHHHcCCccCceEEEEeCCCCCc
Confidence 34444 56678999999999999999999999999999988 665 45
Q ss_pred CChHHHHHHHHHhCCeEec-----ccCCCCCCcccccceEEEEEECCeEEEEEEcCCCC---------------------
Q 008527 317 VAEEDLLRVAAATGGTVQT-----SVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSG--------------------- 370 (562)
Q Consensus 317 v~~~~Le~Ia~~TGa~ii~-----sl~~l~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~--------------------- 370 (562)
+++++++|||++|||++++ ++++++.+++|+|+.+++.+ +++++++++..+
T Consensus 281 ~~~~~l~~la~~tGa~~~~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~ 357 (520)
T cd03344 281 RRKAMLEDIAILTGGTVISEELGLKLEDVTLEDLGRAKKVVVTK---DDTTIIGGAGDKAAIKARIAQIRKQIEETTSDY 357 (520)
T ss_pred ccHHHHHHHHHHhCCEEecccccCCcccCCHHHCCcceEEEEee---ceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCHH
Confidence 5999999999999999999 78899888999999999865 789999988664
Q ss_pred --------------ceEEEEeecCCHHHHHHHHHHHHHHHHHHHHHHhCCceeccCCccHHHHHHHHHHHhhhccchHHH
Q 008527 371 --------------RTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQF 436 (562)
Q Consensus 371 --------------~~~TIll~G~t~~~l~e~k~~i~dal~~~~~~l~~~~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~ 436 (562)
+.+||+|||+|+.+++|++|+++||++++++++++| +|||||++|++++.+|++++. .++++++
T Consensus 358 ~~~~l~eR~~~l~~~~~TI~irG~t~~~l~E~~r~i~Dal~~~k~a~~~g-~VpGGGa~e~~~s~~L~~~~~-~~~~~~~ 435 (520)
T cd03344 358 DKEKLQERLAKLSGGVAVIKVGGATEVELKEKKDRVEDALNATRAAVEEG-IVPGGGVALLRASPALDKLKA-LNGDEKL 435 (520)
T ss_pred HHHHHHHHHHHhcCCeEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHhcC-CCcCCcHHHHHHHHHHHHhcc-CChHHHH
Confidence 599999999999999999999999999999999998 999999999999999999987 8999999
Q ss_pred HHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHhccCCCCCCCceeEecCCCCccccccCCcccchHHHHHHHHHHHHHH
Q 008527 437 FINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAA 516 (562)
Q Consensus 437 ~~~~~a~AL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a 516 (562)
++++|++||+.||++|++|||+|+.+++++|+..| .++|+|+.+|+++||++.|||||+.+|.++|+.|+++|
T Consensus 436 ~~~~~a~Al~~ip~~La~NaG~d~~~vi~~l~~~~-------~~~G~d~~~g~~~d~~~~gV~Dp~~vk~~~l~~A~~~a 508 (520)
T cd03344 436 GIEIVRRALEAPLRQIAENAGVDGSVVVEKVLESP-------DGFGYDAATGEYVDMIEAGIIDPTKVVRSALQNAASVA 508 (520)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhc-------CCEeEECCCCcccchHhccCeecHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998865 46999999999999999999999999999999999999
Q ss_pred HHHHchhHhhc
Q 008527 517 CLILSVDETVK 527 (562)
Q Consensus 517 ~~iL~iD~iI~ 527 (562)
++||++|.+|.
T Consensus 509 ~~iL~id~~i~ 519 (520)
T cd03344 509 SLLLTTEALVV 519 (520)
T ss_pred HHHHhhheEEe
Confidence 99999999885
No 33
>TIGR02348 GroEL chaperonin GroL. This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of Pfam model pfam00118.
Probab=100.00 E-value=1.2e-88 Score=738.13 Aligned_cols=461 Identities=23% Similarity=0.370 Sum_probs=422.1
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhhccCCCCCceeeeCCCCCeEEecCHHHHhccccccCh----HHHHHHHHHHhcccc
Q 008527 17 DTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHP----AAKILVDIAKSQDSE 92 (562)
Q Consensus 17 ~~~~g~~~~~~n~~~~~~l~~iv~sslGP~G~~kmI~~~~g~~~iTnDG~tIl~~l~~~hP----~akll~~~~~~~~~~ 92 (562)
+..+|.++++.|++|+..++++++|||||+||+|||+++.|+++|||||+||+++|+++|| +++|++++|++|+++
T Consensus 3 ~~~~~~~a~~~~~~~~~~la~~v~ttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hp~~~~~akll~~~a~~qd~e 82 (524)
T TIGR02348 3 QIKFDEEARKALLRGVDKLADAVKVTLGPKGRNVVLEKSFGAPTITKDGVTVAKEIELEDKFENMGAQLVKEVASKTNDV 82 (524)
T ss_pred cccccHHHHHHHHHHHHHHHHHhccCcCCCCCcEEEECCCCCeeEeccHHHHHHHccCCChhhHHHHHHHHHHHHccCce
Confidence 4567889999999999999999999999999999999999999999999999999999999 899999999999999
Q ss_pred cCCchhHHHHHHHHHHHHHHHhHHCCCChhhHHHHHHHHHHHHHHHHHhhceeccCCChHHHHHHHHHHHHHhhccCccC
Q 008527 93 VGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIG 172 (562)
Q Consensus 93 ~GDGTtt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~v~~~~~~~~~~~l~~ia~tsl~sk~~~ 172 (562)
+||||||+++|+++||+++.+++++|+||..|++||+.|++.+++.|+++++|++ + .+.+.++|+|+.
T Consensus 83 ~GDGTTtvviLa~~Ll~~a~~li~~GihP~~Ii~G~~~A~~~~l~~L~~~s~~~~--~----~~~l~~va~ts~------ 150 (524)
T TIGR02348 83 AGDGTTTATVLAQAIVKEGLKNVAAGANPIELKRGIEKAVEAAVEELKKLSKPVK--G----KKEIAQVATISA------ 150 (524)
T ss_pred eCCCcchHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHhccCCC--C----HHHHHHHHHHhc------
Confidence 9999999999999999999999999999999999999999999999999999986 3 468999999984
Q ss_pred chhHHHHHHHHHHHHHhCCCCCCcceeEEEecCCCc-ccceeEEEEEEecccCCCcc----cCCcceecCceEEEeeccc
Q 008527 173 GEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTM-RDSFLVNGVAFKKTFSYAGF----EQQPKKFLNPKILLLNIEL 247 (562)
Q Consensus 173 ~~~~~ls~li~~Av~~v~~~~d~~~I~i~~i~gg~~-~ds~li~Giv~~~~~~~~~~----~~~~~~l~n~kIll~~~~L 247 (562)
++++.+++++++|+..++++ +.|.+. .|+.. +++++++|++|+++|.+|+| ++|+++++||+|+++++++
T Consensus 151 ~~~~~l~~lv~~A~~~v~~~---~~i~v~--~g~~~~~~s~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~i 225 (524)
T TIGR02348 151 NNDEEIGSLIAEAMEKVGKD---GVITVE--ESKSLETELEVVEGMQFDRGYISPYFVTDAEKMEVELENPYILITDKKI 225 (524)
T ss_pred cChHHHHHHHHHHHHHhCcC---CcEeee--cCCCccccEEEEEeEEEcCCCCCcccccCccCCeEEeeCceeeeccCCc
Confidence 46899999999999999864 344443 36666 56999999999999999998 3578999999999999975
Q ss_pred cccccccCceEEecCHHhHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcccHHHHHHHHhc------CccccCCCC---
Q 008527 248 ELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADR------DIFCAGRVA--- 318 (562)
Q Consensus 248 e~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lIi~~~~v~~~al~~l~~~------~I~~v~~v~--- 318 (562)
+++++ +.++++++.+.+++|||++++|++.++++|.++ +|+++++.+
T Consensus 226 -------------~~~~~-----------i~~~l~~i~~~g~~lvi~~~~i~~~al~~l~~n~~~~~~~i~avr~~~~~~ 281 (524)
T TIGR02348 226 -------------SNIKD-----------LLPLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRGTLNVCAVKAPGFGD 281 (524)
T ss_pred -------------CCHHH-----------HHHHHHHHHHhCcCEEEECCCCChHHHHHHHHhhcccccceEEEECCCccc
Confidence 34444 578899999999999999999999999999875 788986664
Q ss_pred --hHHHHHHHHHhCCeEec-----ccCCCCCCcccccceEEEEEECCeEEEEEEcCCCCc--------------------
Q 008527 319 --EEDLLRVAAATGGTVQT-----SVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGR-------------------- 371 (562)
Q Consensus 319 --~~~Le~Ia~~TGa~ii~-----sl~~l~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~~-------------------- 371 (562)
+++|+|||++|||++++ +++++++++||+|+.+++.+ ++++++.|+..++
T Consensus 282 ~r~~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~i~~~~~~~~~~~ri~~l~~~~~~~~~~~ 358 (524)
T TIGR02348 282 RRKAMLEDIAILTGGQVISEELGLKLEEVTLDDLGKAKKVTVDK---DNTTIVEGAGDKAAIKARVAQIKAQIEETTSDY 358 (524)
T ss_pred hhhhhHHHHHHHhCCEEecccccCCcCcCCHHHCCCceEEEEee---cEEEEEcCCCCHHHHHHHHHHHHHHHHhcCCHH
Confidence 48999999999999999 89999999999999998864 7889998876544
Q ss_pred ---------------eEEEEeecCCHHHHHHHHHHHHHHHHHHHHHHhCCceeccCCccHHHHHHHHHHHhhhccchHHH
Q 008527 372 ---------------TATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQF 436 (562)
Q Consensus 372 ---------------~~TIll~G~t~~~l~e~k~~i~dal~~~~~~l~~~~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~ 436 (562)
.+||+|||+|+.+++|++|+++||++++++++++| +|||||++|++++.+|++ +...++++++
T Consensus 359 ~~~~l~eR~~~l~~~~~tI~irG~t~~~l~E~er~i~Dal~~~r~a~~~g-~VpGGGa~e~~~s~~L~~-~~~~~~~~~~ 436 (524)
T TIGR02348 359 DREKLQERLAKLAGGVAVIKVGAATETEMKEKKLRVEDALNATRAAVEEG-IVPGGGVALLRAAAALEG-LKGDNEDEAI 436 (524)
T ss_pred HHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcC-CccCCcHHHHHHHHHHHH-hccCChHHHH
Confidence 68999999999999999999999999999999998 999999999999999998 7778899999
Q ss_pred HHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHhccCCCCCCCceeEecCCCCccccccCCcccchHHHHHHHHHHHHHH
Q 008527 437 FINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAA 516 (562)
Q Consensus 437 ~~~~~a~AL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a 516 (562)
++++|++||+.||++|++|||+|+.+++.+|+.. . .++|+|+.+|++.||++.|||||+.||.++|+.|+++|
T Consensus 437 ~~~~~a~AL~~ip~~La~NaG~d~~~v~~~l~~~--~-----~~~G~d~~~g~~~d~~~~gI~Dp~~vk~~al~~A~~~a 509 (524)
T TIGR02348 437 GIDIVKRALEAPLRQIAENAGKDGAVVAEKVKES--K-----GNFGFNAATGEYEDLVEAGIIDPTKVTRSALQNAASIA 509 (524)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhc--C-----CCeeEeCcCCcccchhhccCEEcHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999864 2 33899999999999999999999999999999999999
Q ss_pred HHHHchhHhhcCCC
Q 008527 517 CLILSVDETVKNPK 530 (562)
Q Consensus 517 ~~iL~iD~iI~~~~ 530 (562)
++||++|++|...|
T Consensus 510 ~~iL~id~ii~~~~ 523 (524)
T TIGR02348 510 GLLLTTEAVVADKP 523 (524)
T ss_pred HHHHhHHHHhhcCC
Confidence 99999999997654
No 34
>PRK12852 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=1.7e-88 Score=740.31 Aligned_cols=464 Identities=23% Similarity=0.344 Sum_probs=423.6
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhhccCCCCCceeeeCCCCCeEEecCHHHHhccccc----cChHHHHHHHHHHhcccc
Q 008527 17 DTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDI----VHPAAKILVDIAKSQDSE 92 (562)
Q Consensus 17 ~~~~g~~~~~~n~~~~~~l~~iv~sslGP~G~~kmI~~~~g~~~iTnDG~tIl~~l~~----~hP~akll~~~~~~~~~~ 92 (562)
+..+|.++++.|++|+..++++|+|||||+||+|||+++.|+++|||||+||+++|++ +||+++|+++++++|+++
T Consensus 5 ~~~~~~~a~~~~~~~~~~la~~v~tTLGP~G~~kmi~~~~g~~~iTnDG~TIlk~i~~~~~~~~p~akll~e~a~~q~~e 84 (545)
T PRK12852 5 DVKFSGDARDRMLRGVDILANAVKVTLGPKGRNVVIEKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVREVASKTNDL 84 (545)
T ss_pred hhhccHHHHHHHHHHHHHHHHHHhcccCCCCCCEEEECCCCCeeEeccHHHHHHHccCCCcccChHHHHHHHHHhhcCce
Confidence 4567889999999999999999999999999999999999999999999999999999 599999999999999999
Q ss_pred cCCchhHHHHHHHHHHHHHHHhHHCCCChhhHHHHHHHHHHHHHHHHHhhceeccCCChHHHHHHHHHHHHHhhccCccC
Q 008527 93 VGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIG 172 (562)
Q Consensus 93 ~GDGTtt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~v~~~~~~~~~~~l~~ia~tsl~sk~~~ 172 (562)
+||||||+++|+++||+++.+++++|+||..|++||++|++.+++.|+++++|++. .+++.++|+++.+
T Consensus 85 ~GDGTTtvvvLa~eLL~~a~~li~~Gi~P~~I~~G~~~A~~~~l~~L~~~s~~v~~------~~~l~~va~~s~~----- 153 (545)
T PRK12852 85 AGDGTTTATVLAQAIVREGAKAVAAGMNPMDLKRGIDIAVAAVVKDIEKRAKPVAS------SAEIAQVGTISAN----- 153 (545)
T ss_pred ecCCcchHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCC------HHHHHHHHhhhcC-----
Confidence 99999999999999999999999999999999999999999999999999999863 2469999998854
Q ss_pred chhHHHHHHHHHHHHHhCCCCCCcceeEEEecCCCc-ccceeEEEEEEecccCCCcc----cCCcceecCceEEEeeccc
Q 008527 173 GEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTM-RDSFLVNGVAFKKTFSYAGF----EQQPKKFLNPKILLLNIEL 247 (562)
Q Consensus 173 ~~~~~ls~li~~Av~~v~~~~d~~~I~i~~i~gg~~-~ds~li~Giv~~~~~~~~~~----~~~~~~l~n~kIll~~~~L 247 (562)
.++.+++++++|+.+++++ +.|.+. .|+.. .++++++|++|+++|.+||| +.|+..++||+|+++++.+
T Consensus 154 -~~~~l~~li~eA~~~vg~~---g~i~v~--~g~~~~~~~~~v~G~~~~~g~~~p~~v~~~~~~~~~l~n~~Ili~d~~i 227 (545)
T PRK12852 154 -GDAAIGKMIAQAMQKVGNE---GVITVE--ENKSLETEVDIVEGMKFDRGYLSPYFVTNAEKMTVELDDAYILLHEKKL 227 (545)
T ss_pred -ChHHHHHHHHHHHHHhccC---Cceeee--cCCCcceEEEEEEeEEecCCccCCccccccccceEEecCceEEEecCcc
Confidence 3789999999999999865 333333 36665 68999999999999999987 3578899999999998864
Q ss_pred cccccccCceEEecCHHhHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcccHHHHHHHHhc------CccccCCCC---
Q 008527 248 ELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADR------DIFCAGRVA--- 318 (562)
Q Consensus 248 e~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lIi~~~~v~~~al~~l~~~------~I~~v~~v~--- 318 (562)
++++ .+.++++.+.+.+++|||++++|++.++++|..+ +|+++++.+
T Consensus 228 -------------~~~~-----------~i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~nk~~~~~~i~av~~~~~~~ 283 (545)
T PRK12852 228 -------------SGLQ-----------AMLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGD 283 (545)
T ss_pred -------------CCHH-----------HHHHHHHHHHHhCcCEEEECCCCcHHHHHHHHHhcccccceEEEEecCCccc
Confidence 2333 3678899999999999999999999999999865 798887554
Q ss_pred --hHHHHHHHHHhCCeEec-----ccCCCCCCcccccceEEEEEECCeEEEEEEcCCCC---------------------
Q 008527 319 --EEDLLRVAAATGGTVQT-----SVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSG--------------------- 370 (562)
Q Consensus 319 --~~~Le~Ia~~TGa~ii~-----sl~~l~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~--------------------- 370 (562)
+++|+|||.+|||++++ ++++++.+++|+|+.+++.+ ++++++.|+..+
T Consensus 284 ~r~~~l~~ia~~tGa~~i~~~~~~~l~~~~~~~lG~~~~v~~~~---~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~ 360 (545)
T PRK12852 284 RRKAMLEDIAILTGGQLISEDLGIKLENVTLKMLGRAKKVVIDK---ENTTIVNGAGKKADIEARVGQIKAQIEETTSDY 360 (545)
T ss_pred chHhHHHHHHHhcCCEEEecCcCCCcCCCCHHHCCCCcEEEEEc---cEEEEEeCCCCHHHHHHHHHHHHHHHHhcccHH
Confidence 99999999999999999 78999989999999998876 688899887653
Q ss_pred --------------ceEEEEeecCCHHHHHHHHHHHHHHHHHHHHHHhCCceeccCCccHHHHHHHHHHHhhhccchHHH
Q 008527 371 --------------RTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQF 436 (562)
Q Consensus 371 --------------~~~TIll~G~t~~~l~e~k~~i~dal~~~~~~l~~~~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~ 436 (562)
+.+||+|||+|+.+++|++|+++||++++++++++| +|||||++|++++++|++++.. ++++|+
T Consensus 361 ~~~~l~~R~~~l~~~~~tI~irG~t~~~l~E~er~i~DAl~a~~~a~~~g-~VpGGGa~e~~~s~~L~~~~~~-~~~~q~ 438 (545)
T PRK12852 361 DREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVEDALNATRAAVQEG-IVPGGGVALLRAKKAVGRINND-NADVQA 438 (545)
T ss_pred HHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHhcC-CCcCchHHHHHHHHHHHHhhcC-CcHHHH
Confidence 789999999999999999999999999999999998 9999999999999999998866 788999
Q ss_pred HHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHhccCCCCCCCceeEecCCCCccccccCCcccchHHHHHHHHHHHHHH
Q 008527 437 FINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAA 516 (562)
Q Consensus 437 ~~~~~a~AL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a 516 (562)
++++|++||+.||++|++|||+|+.+++.+|+..| + +++|+|+.+|+++||++.|||||+.+|.++|+.|+|+|
T Consensus 439 ~i~~~a~AL~~ip~~La~NaG~d~~~vl~~l~~~~-----~-~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~e~a 512 (545)
T PRK12852 439 GINIVLKALEAPIRQIAENAGVEGSIVVGKILENK-----S-ETFGFDAQTEEYVDMVAKGIIDPAKVVRTALQDAASVA 512 (545)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhc-----C-CCeeEeCcCCCcccHHhCcCCcChHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998876 2 67999999999999999999999999999999999999
Q ss_pred HHHHchhHhhcCCCcC
Q 008527 517 CLILSVDETVKNPKVV 532 (562)
Q Consensus 517 ~~iL~iD~iI~~~~~~ 532 (562)
++||++|++|..+|..
T Consensus 513 ~~iL~id~iI~~~~~~ 528 (545)
T PRK12852 513 GLLVTTEAMVAELPKK 528 (545)
T ss_pred HHHHhHHHHhhcCCCC
Confidence 9999999999987654
No 35
>CHL00093 groEL chaperonin GroEL
Probab=100.00 E-value=4.4e-88 Score=734.49 Aligned_cols=463 Identities=21% Similarity=0.325 Sum_probs=416.9
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhhccCCCCCceeeeCCCCCeEEecCHHHHhccccccChHH----HHHHHHHHhcccc
Q 008527 17 DTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAA----KILVDIAKSQDSE 92 (562)
Q Consensus 17 ~~~~g~~~~~~n~~~~~~l~~iv~sslGP~G~~kmI~~~~g~~~iTnDG~tIl~~l~~~hP~a----kll~~~~~~~~~~ 92 (562)
+..+|.++|+..+++|..++++|+|||||+||+|||+++.|+++|||||+||+++|+++||++ +|+++++++|+++
T Consensus 4 ~~~~~~~~~~~~~~g~~~la~~v~tTlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~a~~g~~li~~~a~~~~~e 83 (529)
T CHL00093 4 KILYQDNARRALERGMDILAEAVSVTLGPKGRNVVLEKKYGSPQIVNDGVTIAKEIELEDHIENTGVALIRQAASKTNDV 83 (529)
T ss_pred eeecCHHHHHHHHHHHHHHHHHHhcccCCCCCcEEEECCCCCeeEeccHHHHHHHccCcCHHHHHHHHHHHHHHHhcCce
Confidence 456788999999999999999999999999999999999999999999999999999999998 5888899999999
Q ss_pred cCCchhHHHHHHHHHHHHHHHhHHCCCChhhHHHHHHHHHHHHHHHHHhhceeccCCChHHHHHHHHHHHHHhhccCccC
Q 008527 93 VGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIG 172 (562)
Q Consensus 93 ~GDGTtt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~v~~~~~~~~~~~l~~ia~tsl~sk~~~ 172 (562)
+||||||++||+++||+++.+++++|+||..|++||+.|.+.+++.|+++++|++ + ++.|.++|++++
T Consensus 84 ~GDGTTtvvvLa~eLL~~a~~li~~Gi~P~~I~~G~~~A~~~~l~~L~~~s~~v~--d----~~~L~~VA~ts~------ 151 (529)
T CHL00093 84 AGDGTTTATVLAYAIVKQGMKNVAAGANPISLKRGIEKATQYVVSQIAEYARPVE--D----IQAITQVASISA------ 151 (529)
T ss_pred ecCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCC--C----HHHHHHHHHHhc------
Confidence 9999999999999999999999999999999999999999999999999999986 3 568999999984
Q ss_pred chhHHHHHHHHHHHHHhCCCCCCcceeEEEecCC--CcccceeEEEEEEecccCCCccc----CCcceecCceEEEeecc
Q 008527 173 GEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGG--TMRDSFLVNGVAFKKTFSYAGFE----QQPKKFLNPKILLLNIE 246 (562)
Q Consensus 173 ~~~~~ls~li~~Av~~v~~~~d~~~I~i~~i~gg--~~~ds~li~Giv~~~~~~~~~~~----~~~~~l~n~kIll~~~~ 246 (562)
++++.+++++++|+.+++++ +.+.+.++ ..+++++++|++|+++|.+|||. +|+.+++||+|++++++
T Consensus 152 ~~~~~l~~lv~eAv~~vg~~------g~i~~~~g~~~~~~~~~v~G~~~~~g~~~p~fv~~~k~~~~~l~n~~Ili~d~~ 225 (529)
T CHL00093 152 GNDEEVGSMIADAIEKVGRE------GVISLEEGKSTVTELEITEGMRFEKGFISPYFVTDTERMEVVQENPYILLTDKK 225 (529)
T ss_pred cChHHHHHHHHHHHHHhccC------CceeecCCCccceeeEEEeeEEecCccCcCccccCCccceEEecCceehhhcCC
Confidence 47899999999999999864 23334433 34567999999999999999984 34457999999999999
Q ss_pred ccccccccCceEEecCHHhHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcccHHHHH--HHHh----cCccccCCC---
Q 008527 247 LELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQ--YFAD----RDIFCAGRV--- 317 (562)
Q Consensus 247 Le~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lIi~~~~v~~~al~--~l~~----~~I~~v~~v--- 317 (562)
|++.+. .+.++++++.+.++++++++++|++.++. ++++ .+|++++++
T Consensus 226 le~~~~-----------------------~i~~~l~~i~~~~~~lvi~~~~i~~~al~~l~l~k~~g~~~i~avr~~~~~ 282 (529)
T CHL00093 226 ITLVQQ-----------------------DLLPILEQVTKTKRPLLIIAEDVEKEALATLVLNKLRGIVNVVAVRAPGFG 282 (529)
T ss_pred CCchHH-----------------------HHHHHHHHHHhcCCCEEEEcCCCChHHHHHHHHhhhcccceEEEEecCCCC
Confidence 975321 27888999999999999999999985555 4477 589999887
Q ss_pred --ChHHHHHHHHHhCCeEec-----ccCCCCCCcccccceEEEEEECCeEEEEEEcCC---------CC-----------
Q 008527 318 --AEEDLLRVAAATGGTVQT-----SVNNVVDEVLGTCEHFEERQVGNERFNIFSGCP---------SG----------- 370 (562)
Q Consensus 318 --~~~~Le~Ia~~TGa~ii~-----sl~~l~~~~lG~~~~v~~~~ig~~~~~~~~g~~---------~~----------- 370 (562)
++++|+|||.+|||++++ ++++++++++|+|+.+++.+ +++++|+++. ..
T Consensus 283 ~~~k~~l~~ia~~tGa~~i~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 359 (529)
T CHL00093 283 DRRKAMLEDIAILTGGQVITEDAGLSLETIQLDLLGQARRIIVTK---DSTTIIADGNEEQVKARCEQLRKQIEIADSSY 359 (529)
T ss_pred cchHHHHHHHHHhhCCEEecccccCCcCCCCHHHCCcceEEEEec---CEEEEEecCcHHHHHHHHHHHHHHhhhcCCHH
Confidence 458899999999999999 79999999999999999864 6888887432 11
Q ss_pred --------------ceEEEEeecCCHHHHHHHHHHHHHHHHHHHHHHhCCceeccCCccHHHHHHHHHHHhh-hccchHH
Q 008527 371 --------------RTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESR-AIAGKSQ 435 (562)
Q Consensus 371 --------------~~~TIll~G~t~~~l~e~k~~i~dal~~~~~~l~~~~vvpGGG~~E~~l~~~L~~~~~-~~~~~~~ 435 (562)
..+||+|||+|+.+++|.+|+++||++++++++++| +|||||++|++++.+|++++. ..++++|
T Consensus 360 ~~~~l~eR~~~l~g~~~~I~irg~t~~~l~E~er~i~DAl~a~r~a~~~g-vVpGGGa~e~~~s~~L~~~~~~~~~g~~~ 438 (529)
T CHL00093 360 EKEKLQERLAKLSGGVAVIKVGAATETEMKDKKLRLEDAINATKAAVEEG-IVPGGGATLVHLSENLKTWAKNNLKEDEL 438 (529)
T ss_pred HHHHHHHHHHHhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcC-cccCCcHHHHHHHHHHHHHhccCCChHHH
Confidence 378899999999999999999999999999999998 999999999999999999886 7889999
Q ss_pred HHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHhccCCCCCCCceeEecCCCCccccccCCcccchHHHHHHHHHHHHH
Q 008527 436 FFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEA 515 (562)
Q Consensus 436 ~~~~~~a~AL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~ 515 (562)
+++++|++||+.||++|++|||+|+.+++.+++.. + .++|||+.+|+++||++.|||||+.||.++|+.|+|+
T Consensus 439 ~~i~~~a~AL~~ip~~La~NaG~d~~~v~~~l~~~------~-~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~e~ 511 (529)
T CHL00093 439 IGALIVARAILAPLKRIAENAGKNGSVIIEKVQEQ------D-FEIGYNAANNKFVNMYEAGIIDPAKVTRSALQNAASI 511 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcc------C-CCEeEECCCCcccchHhccCEEcHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999753 3 6899999999999999999999999999999999999
Q ss_pred HHHHHchhHhhcCCCc
Q 008527 516 ACLILSVDETVKNPKV 531 (562)
Q Consensus 516 a~~iL~iD~iI~~~~~ 531 (562)
|++||+||++|...|+
T Consensus 512 a~~iL~id~ii~~~~~ 527 (529)
T CHL00093 512 ASMILTTECIIVDKKE 527 (529)
T ss_pred HHHHHHHHHHHHcCCC
Confidence 9999999999998763
No 36
>PRK14104 chaperonin GroEL; Provisional
Probab=100.00 E-value=6.6e-87 Score=725.42 Aligned_cols=469 Identities=21% Similarity=0.322 Sum_probs=425.2
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhhccCCCCCceeeeCCCCCeEEecCHHHHhcccccc----ChHHHHHHHHHHhcccc
Q 008527 17 DTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIV----HPAAKILVDIAKSQDSE 92 (562)
Q Consensus 17 ~~~~g~~~~~~n~~~~~~l~~iv~sslGP~G~~kmI~~~~g~~~iTnDG~tIl~~l~~~----hP~akll~~~~~~~~~~ 92 (562)
+..+|.++++.|++|+..++++|++||||+||+|||+++.|+++|||||+||+++|+++ ||+++|++++|++|+++
T Consensus 5 ~~~~~~~a~~~~~~~~~~la~~v~tTLGP~G~~k~i~~~~g~~~iTnDG~tIlk~i~~~d~~~~pgakll~e~a~~qd~e 84 (546)
T PRK14104 5 EVKFGVDARDRMLRGVDILANAVKVTLGPKGRNVVLDKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVREVASKSADA 84 (546)
T ss_pred eecchHHHHHHHHHHHHHHHHHHhhccCCCCCceEEEcCCCCeeEeccHHHHHHHhcCCCcccChHHHHHHHHHHhhccc
Confidence 45688999999999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred cCCchhHHHHHHHHHHHHHHHhHHCCCChhhHHHHHHHHHHHHHHHHHhhceeccCCChHHHHHHHHHHHHHhhccCccC
Q 008527 93 VGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIG 172 (562)
Q Consensus 93 ~GDGTtt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~v~~~~~~~~~~~l~~ia~tsl~sk~~~ 172 (562)
+||||||+|+|+++||+++.+++++|+||..|++||++|++.+++.|+++++|++. .+++.++|+++.+
T Consensus 85 ~GDGTTTvvvLa~~LL~~a~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~a~~v~~------~~~l~~va~~s~~----- 153 (546)
T PRK14104 85 AGDGTTTATVLAQAIVREGAKSVAAGMNPMDLKRGIDLAVEAVVADLVKNSKKVTS------NDEIAQVGTISAN----- 153 (546)
T ss_pred ccCcccHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHhcccCCC------HHHHHHHHHHHhc-----
Confidence 99999999999999999999999999999999999999999999999999999863 2578999999854
Q ss_pred chhHHHHHHHHHHHHHhCCCCCCcceeEEEecCCCc-ccceeEEEEEEecccCCCccc----CCcceecCceEEEeeccc
Q 008527 173 GEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTM-RDSFLVNGVAFKKTFSYAGFE----QQPKKFLNPKILLLNIEL 247 (562)
Q Consensus 173 ~~~~~ls~li~~Av~~v~~~~d~~~I~i~~i~gg~~-~ds~li~Giv~~~~~~~~~~~----~~~~~l~n~kIll~~~~L 247 (562)
+++.+++++++|+..++++ +.|.+.. ++.. +++++++|++|+++|.+|||. .++.++++|+|++++..+
T Consensus 154 -~d~~i~~lv~~Av~~vg~~---g~i~v~~--~~~~~~~~~~~~G~~~~~g~~~p~~~~~~~~~~~~~~~~~Ilv~d~~i 227 (546)
T PRK14104 154 -GDAEIGKFLADAMKKVGNE---GVITVEE--AKSLETELDVVEGMQFDRGYISPYFVTNADKMRVEMDDAYILINEKKL 227 (546)
T ss_pred -CchHHHHHHHHHHHHhccC---CceeeEe--cccccceEEEEEEEEEeCCCCCcchhcCcccCceeeeCcEEEEehhhh
Confidence 4588999999999999865 3444433 3455 579999999999999999983 467889999999998543
Q ss_pred cccccccCceEEecCHHhHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcccHHHHHHHHh------cCccccCCCC---
Q 008527 248 ELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFAD------RDIFCAGRVA--- 318 (562)
Q Consensus 248 e~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lIi~~~~v~~~al~~l~~------~~I~~v~~v~--- 318 (562)
+++++ +.++++++.+.+++|||++++|++.++++|.. .+|.++++.+
T Consensus 228 -------------~~~~~-----------i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~Nk~~~~~~i~av~~~~~g~ 283 (546)
T PRK14104 228 -------------SSLNE-----------LLPLLEAVVQTGKPLVIVAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGD 283 (546)
T ss_pred -------------cCHHH-----------HHHHHHHHHHhCcCEEEECCCCcHHHHHHHHhCcccceeeEEEEeccCCCc
Confidence 34433 67889999999999999999999999999983 5788885555
Q ss_pred --hHHHHHHHHHhCCeEecc-----cCCCCCCcccccceEEEEEECCeEEEEEEcCCCC---------------------
Q 008527 319 --EEDLLRVAAATGGTVQTS-----VNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSG--------------------- 370 (562)
Q Consensus 319 --~~~Le~Ia~~TGa~ii~s-----l~~l~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~--------------------- 370 (562)
+++|+|||.+|||+++++ +++++.+++|+|.++++ ++++++++.|+..+
T Consensus 284 ~r~~~l~~ia~~tG~~~i~~~~~~~l~~~~~~~LG~a~~v~~---~~~~~~~i~g~~~~~~i~~ri~~l~~~~~~~~~~~ 360 (546)
T PRK14104 284 RRKAMLQDIAILTGGQAISEDLGIKLENVTLQMLGRAKKVMI---DKENTTIVNGAGKKADIEARVAQIKAQIEETTSDY 360 (546)
T ss_pred chHHHHHHHHHHhCCEEEecCCCCCcCcCCHHHCCceeEEEE---cCCEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCHH
Confidence 899999999999999999 89999899999999875 67899999998764
Q ss_pred --------------ceEEEEeecCCHHHHHHHHHHHHHHHHHHHHHHhCCceeccCCccHHHHHHHHHHHhhhccchHHH
Q 008527 371 --------------RTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQF 436 (562)
Q Consensus 371 --------------~~~TIll~G~t~~~l~e~k~~i~dal~~~~~~l~~~~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~ 436 (562)
+.+||+|||+|+.+++|++|+++||++++++++++| +|||||++|++++..|+++. ..++++++
T Consensus 361 ~~~~l~eRi~~l~~~~atI~irG~t~~~l~e~~r~i~Dal~a~~~ai~~g-~VpGGGa~e~~~s~~L~~~~-~~~~~~~~ 438 (546)
T PRK14104 361 DREKLQERLAKLAGGVAVIRVGGATEVEVKERKDRVDDAMHATRAAVEEG-IVPGGGVALLRASEQLKGIK-TKNDDQKT 438 (546)
T ss_pred HHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-cCcCchHHHHHHHHHHHHhh-cCChHHHH
Confidence 899999999999999999999999999999999998 99999999999999999874 35789999
Q ss_pred HHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHhccCCCCCCCceeEecCCCCccccccCCcccchHHHHHHHHHHHHHH
Q 008527 437 FINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAA 516 (562)
Q Consensus 437 ~~~~~a~AL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a 516 (562)
++++|++||+.||++|++|||+|+.+++.+|+..| + .++|+|+.+|+++||++.|||||+.||.++|++|+++|
T Consensus 439 ~i~~~a~Al~~ip~~La~NaG~d~~~v~~~l~~~~-----~-~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~~~a 512 (546)
T PRK14104 439 GVEIVRKALSAPARQIAINAGEDGSVIVGKILEKE-----Q-YSYGFDSQTGEYGNLVSKGIIDPTKVVRTAIQNAASVA 512 (546)
T ss_pred HHHHHHHHHHhhHHHHHHhCCCCHHHHHHHHHhcC-----C-CcEeEeCCCCceeehHhcCCEEcHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998753 2 67999999999999999999999999999999999999
Q ss_pred HHHHchhHhhcCCCcCCCcce
Q 008527 517 CLILSVDETVKNPKVVCKQIF 537 (562)
Q Consensus 517 ~~iL~iD~iI~~~~~~~~~~~ 537 (562)
++||++|++|...|...+..|
T Consensus 513 ~~iL~id~~I~~~~~~~~~~~ 533 (546)
T PRK14104 513 ALLITTEAMVAELPKKGGAGP 533 (546)
T ss_pred HHHHHHHHHHhcCCcCCCCCC
Confidence 999999999998776655554
No 37
>PLN03167 Chaperonin-60 beta subunit; Provisional
Probab=100.00 E-value=1.3e-86 Score=726.68 Aligned_cols=468 Identities=22% Similarity=0.346 Sum_probs=417.8
Q ss_pred cccccH--HHHHHHHHHHHHHHHHhhhccCCCCCceeeeCCCCCeEEecCHHHHhccccccChH----HHHHHHHHHhcc
Q 008527 17 DTSQGK--AQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPA----AKILVDIAKSQD 90 (562)
Q Consensus 17 ~~~~g~--~~~~~n~~~~~~l~~iv~sslGP~G~~kmI~~~~g~~~iTnDG~tIl~~l~~~hP~----akll~~~~~~~~ 90 (562)
+..+|. ++|+..+++|+.|+++|++||||+||+|||+++.|+++|||||+||+++|+++||+ ++|++++|++|+
T Consensus 58 ~~~~~~~~~ar~~l~~g~~~la~~vktTLGP~G~~kmi~~~~G~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~qd 137 (600)
T PLN03167 58 ELHFNKDGSAIKKLQAGVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTN 137 (600)
T ss_pred eeecCCcHHHHHHHHHHHHHHHHHHhccCCCCCCCEEEECCCCCeeEeccHHHHHHHcccCCchhhHHHHHHHHHHHhhh
Confidence 456777 69999999999999999999999999999999999999999999999999999994 999999999999
Q ss_pred cccCCchhHHHHHHHHHHHHHHHhHHCCCChhhHHHHHHHHHHHHHHHHHhhceeccCCChHHHHHHHHHHHHHhhccCc
Q 008527 91 SEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKL 170 (562)
Q Consensus 91 ~~~GDGTtt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~v~~~~~~~~~~~l~~ia~tsl~sk~ 170 (562)
+++||||||++||+++||+++.++++.|+||..|++||+.|++.+++.|++++.|++ + +.|.++|+++++
T Consensus 138 ~evGDGTTTvvVLa~~LL~ea~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~s~~v~--d-----~~L~~vA~tS~~--- 207 (600)
T PLN03167 138 DLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVQITRGIEKTAKALVKELKKMSKEVE--D-----SELADVAAVSAG--- 207 (600)
T ss_pred hhhCCCccHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhcccCC--H-----HHHHHHHHHhcc---
Confidence 999999999999999999999999999999999999999999999999999999874 2 469999999954
Q ss_pred cCchhHHHHHHHHHHHHHhCCCCCCcceeEEEecCCCcccc-eeEEEEEEecccCCCcc----cCCcceecCceEEEeec
Q 008527 171 IGGEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTMRDS-FLVNGVAFKKTFSYAGF----EQQPKKFLNPKILLLNI 245 (562)
Q Consensus 171 ~~~~~~~ls~li~~Av~~v~~~~d~~~I~i~~i~gg~~~ds-~li~Giv~~~~~~~~~~----~~~~~~l~n~kIll~~~ 245 (562)
+++.|++|+++|+.+++++ +.|. .-+|++.+|+ ++++|++|+++|.|||| ++|+++++||+|+++++
T Consensus 208 ---~~~~i~~liaeAv~~Vg~~---g~i~--v~~g~s~~dsl~~v~G~~~d~g~~spyfvt~~~~m~~~l~np~Ill~d~ 279 (600)
T PLN03167 208 ---NNYEVGNMIAEAMSKVGRK---GVVT--LEEGKSAENNLYVVEGMQFDRGYISPYFVTDSEKMSVEYDNCKLLLVDK 279 (600)
T ss_pred ---CcHHHHHHHHHHHHHhccC---CcEE--eccCCCccceeEEEEEEEecCCccCcccccCcCCCeEEEeCCEEEEEcc
Confidence 6779999999999999864 2222 2368888886 89999999999999998 36889999999999998
Q ss_pred cccccccccCceEEecCHHhHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcccHHHHHHHH------hcCccccCCCC-
Q 008527 246 ELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFA------DRDIFCAGRVA- 318 (562)
Q Consensus 246 ~Le~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lIi~~~~v~~~al~~l~------~~~I~~v~~v~- 318 (562)
+| ++.++ +.++++++.+.++++|+++++|++.++++|. ..+|.++++.+
T Consensus 280 ~i-------------~~~~~-----------l~~~le~i~~~g~~lvI~a~~I~~~aL~~L~~nkl~g~~~i~aVk~p~~ 335 (600)
T PLN03167 280 KI-------------TNARD-----------LIGILEDAIRGGYPLLIIAEDIEQEALATLVVNKLRGSLKIAALKAPGF 335 (600)
T ss_pred cc-------------CCHHH-----------HHHHHHHHHHhCcCEEEEcCCCCHHHHHHHHHhhccccceEEEEEcccC
Confidence 64 45555 3455678888999999999999999999998 67899988775
Q ss_pred ----hHHHHHHHHHhCCeEec-----ccCCCCCCcccccceEEEEE-----ECC--------eEEEEEEcCC--------
Q 008527 319 ----EEDLLRVAAATGGTVQT-----SVNNVVDEVLGTCEHFEERQ-----VGN--------ERFNIFSGCP-------- 368 (562)
Q Consensus 319 ----~~~Le~Ia~~TGa~ii~-----sl~~l~~~~lG~~~~v~~~~-----ig~--------~~~~~~~g~~-------- 368 (562)
+++|+|||.+|||++++ ++++++.+++|+|+++++.+ +|+ +|+.+|+++.
T Consensus 336 g~~~~~~L~dia~~tGa~~i~~~~~~~l~~~~~~~LG~a~~v~~~~~~t~iig~~~~~~~i~~r~~~i~~~~~~~~~~~~ 415 (600)
T PLN03167 336 GERKSQYLDDIAILTGGTVIREEVGLSLDKVGKEVLGTAAKVVLTKDTTTIVGDGSTQEAVNKRVAQIKNLIEAAEQDYE 415 (600)
T ss_pred CcchHHHHHHHHHhhCCEEecccccCCcccCCHHHCceeeEEEEecccceeeCCCccHHHHHHHHHHHHhhhhccCCHHH
Confidence 88999999999999999 68889888999999999886 665 3666666543
Q ss_pred ----C------CceEEE-EeecCCHHHHHHHHHHHHHHHHHHHHHHhCCceeccCCccHHHHHHHHHHHhhhccchHH-H
Q 008527 369 ----S------GRTATI-VLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQ-F 436 (562)
Q Consensus 369 ----~------~~~~TI-ll~G~t~~~l~e~k~~i~dal~~~~~~l~~~~vvpGGG~~E~~l~~~L~~~~~~~~~~~~-~ 436 (562)
. ...+|+ +|||+|+.+++|+||+++||++++++++++| +|||||++|++++.+|++++...++++| .
T Consensus 416 ~~~l~~Ri~~l~g~~aiI~vgG~t~~~l~E~er~i~DAl~avk~ai~~g-vVpGGGa~el~ls~~L~~~~~~~~~~eq~~ 494 (600)
T PLN03167 416 KEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLASKVDAIKDTLENDEQKV 494 (600)
T ss_pred HHHHHHHHhhcCCcEEEEEecCCcHHHHHHHHHHHHHHHHHHHHHHhcC-CCccHHHHHHHHHHHHHHHHhcCCChhHHH
Confidence 0 113455 5999999999999999999999999999999 9999999999999999998877777666 4
Q ss_pred HHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHhccCCCCCCCceeEecCCCCccccccCCcccchHHHHHHHHHHHHHH
Q 008527 437 FINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAA 516 (562)
Q Consensus 437 ~~~~~a~AL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a 516 (562)
+++++++||+.||++|++|||+|+.+++.+|+.. ++ .++|||+.+|+++||++.|||||+.||+++|+.|+++|
T Consensus 495 g~~~~~~Al~~p~r~La~NAG~d~~~vv~~L~~~-----~~-~~~G~d~~~g~~~dm~~~GI~Dp~~Vk~~al~~A~~~A 568 (600)
T PLN03167 495 GADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSN-----DN-PKFGYNAATGKYEDLMAAGIIDPTKVVRCCLEHAASVA 568 (600)
T ss_pred HHHHHHHHHhcchhhhhhcCCCCHHHHHHHHHhc-----CC-CCEeEeCCCCcCcchHhccCeecHHHHHHHHHHHHHHH
Confidence 5999999999999999999999999999999753 33 78999999999999999999999999999999999999
Q ss_pred HHHHchhHhhcCCCcCC
Q 008527 517 CLILSVDETVKNPKVVC 533 (562)
Q Consensus 517 ~~iL~iD~iI~~~~~~~ 533 (562)
++||++|++|...+.+.
T Consensus 569 ~~iL~iD~iI~~~~~~~ 585 (600)
T PLN03167 569 KTFLTSDCVVVEIKEPE 585 (600)
T ss_pred HHHHHHHHHhhcCCCCC
Confidence 99999999999865443
No 38
>KOG0360 consensus Chaperonin complex component, TCP-1 alpha subunit (CCT1) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-87 Score=672.85 Aligned_cols=510 Identities=36% Similarity=0.591 Sum_probs=479.9
Q ss_pred ccccccHHHHHHHHHHHHHHHHHhhhccCCCCCceeeeCCCCCeEEecCHHHHhccccccChHHHHHHHHHHhcccccCC
Q 008527 16 TDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGD 95 (562)
Q Consensus 16 ~~~~~g~~~~~~n~~~~~~l~~iv~sslGP~G~~kmI~~~~g~~~iTnDG~tIl~~l~~~hP~akll~~~~~~~~~~~GD 95 (562)
.+...|..+|-.|..|+.+++++|+|||||-|++||++++.|++.+||||+|||+.+.++||++|+|++.++.|++++||
T Consensus 12 ge~~sg~~vr~qnv~a~~~i~nivkss~GPvGldKmlvdd~Gdvt~TndgAtiL~~l~V~HPa~KiLvelaq~qd~evgD 91 (545)
T KOG0360|consen 12 GERLSGERVRTQNVMAAMAIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILSLLEVEHPAAKVLVELAQLQDEEVGD 91 (545)
T ss_pred CCcccchhhhhhhhHHHHHHHHHHHhccCccchhhhccccccceEEeccHHHHHHhhhhcchHHHHHHHHHHhccccccC
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHhHHCCCChhhHHHHHHHHHHHHHHHHHh-hceeccCCChHHHHHHHHHHHHHhhccCccCch
Q 008527 96 GTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKE-LAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGE 174 (562)
Q Consensus 96 GTtt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~l~~L~~-~s~~v~~~~~~~~~~~l~~ia~tsl~sk~~~~~ 174 (562)
|||++++++++|++++.+|+..++||+.+++||+.|+..+++++.+ ++.|++... ++.|.++++|+++||++...
T Consensus 92 gttsvviia~eLl~~a~~Lv~~~ihpt~ii~gyr~ac~e~~k~i~~~~~~~vd~lg----~~~Lin~~ktsmsSK~i~~d 167 (545)
T KOG0360|consen 92 GTTSVVIIAAELLKNADELVKTKIHPTRIISGYRLACIEAVKYITEGLSKPVDSLG----TQILINLAKTSMSSKIIGMD 167 (545)
T ss_pred CceEEEEEEHHhhhhHHHhhcCCCcceehhhhHHHHHHHHHHHhhccceeehhhcc----hHHHHHHHHhhhcceecccc
Confidence 9999999999999999999999999999999999999999999965 688887654 78999999999999999999
Q ss_pred hHHHHHHHHHHHHHhCCCC-------CCcceeEEEecCCCcccceeEEEEEEecccCCCcccCCcceecCceEEEeeccc
Q 008527 175 KEFFASMVVDAVGAIGDGD-------RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNIEL 247 (562)
Q Consensus 175 ~~~ls~li~~Av~~v~~~~-------d~~~I~i~~i~gg~~~ds~li~Giv~~~~~~~~~~~~~~~~l~n~kIll~~~~L 247 (562)
.++|++++++|+..+.--+ ..+.++|.|-+|.+.-+|.+++|+.++...++.. ||.++.|+||+++++.|
T Consensus 168 s~~f~~~Vvda~l~v~~~~~~ge~~ypi~~vnILkahG~s~~eS~l~~GyaLnc~~asq~---m~~~i~~~Kiacld~~L 244 (545)
T KOG0360|consen 168 SDFFTEMVVDALLAVKILDINGEPHYPINSVNILKAHGKSQIESMLLPGYALNCSVASQM---MPLRIKNAKIACLDFTL 244 (545)
T ss_pred hHHHHHHHHHHHHHHhhcccCCceeccccceeEEecCCccchhheeecceeeeccHhhhc---cccccccceeeeEeccc
Confidence 9999999999998775321 4788899999999999999999999999988754 68999999999999999
Q ss_pred cccccccCceEEecCHHhHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcccHHHHHHHHhcCccccCCCChHHHHHHHH
Q 008527 248 ELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAA 327 (562)
Q Consensus 248 e~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lIi~~~~v~~~al~~l~~~~I~~v~~v~~~~Le~Ia~ 327 (562)
...+.+....+.++++++++++.+.|....++.+++|.+.|+|||+++++|||+.+.||.++|+++++|+++++|++|++
T Consensus 245 qk~km~lGv~vvv~dp~kle~ir~~e~~itkeRi~kIl~~ganvVLtt~gIddmc~K~~veagamAVrR~~k~dlk~iak 324 (545)
T KOG0360|consen 245 QKTKMKLGVQVVVDDPEKLEQIRQREQDITKERIKKILATGANVVLTTGGIDDMCLKYFVEAGAMAVRRCKKEDLKRIAK 324 (545)
T ss_pred ccccccccceEEEcChHHHHHHHHHHhHhHHHHHHHHHhcCCcEEEEcCCccHHHHHHHHHcchhhhHHHHHHHHHHHHH
Confidence 98888888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCeEecccCCC------CCCcccccceEEEEEECCeEEEEEEcCCCCceEEEEeecCCHHHHHHHHHHHHHHHHHHHH
Q 008527 328 ATGGTVQTSVNNV------VDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRR 401 (562)
Q Consensus 328 ~TGa~ii~sl~~l------~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~~~~TIll~G~t~~~l~e~k~~i~dal~~~~~ 401 (562)
+||+++++++.++ .+..+|+|+.|.+.+|+++.++++.|.+.. .++|+|||+++..+||++|.+|||+|+++.
T Consensus 325 atGat~~sSla~l~geetf~~~~lG~a~evvqeri~dde~ilikg~ka~-~aSiILrgaNd~~~DEmers~hdaL~Vlkr 403 (545)
T KOG0360|consen 325 ATGATLLSSLANLEGEETFEPASLGSADEVVQERIGDDELILIKGTKAT-SASIILRGANDFMLDEMERSLHDALCVLKR 403 (545)
T ss_pred hhCCeeeehhhccccccccChhhccchhHHHHHhcccceeEEeccCccc-eeeEEEecCCcccHhhhccchhhHHHHHHH
Confidence 9999999998754 556799999999999999999999998766 999999999999999999999999999999
Q ss_pred HHhCCceeccCCccHHHHHHHHHHHhhhccchHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHhccCCCCC----
Q 008527 402 ATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGE---- 477 (562)
Q Consensus 402 ~l~~~~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~---- 477 (562)
.++++++|||||++|.+++-+|++|+.+...++++++..|+.||.+||++|+.|++.|+.+++++++..|..++++
T Consensus 404 tLes~~vvpGGG~vE~aLs~yle~~a~s~~srE~laiaefa~all~ipktla~naa~Dstelvt~lra~Hs~~q~~p~~~ 483 (545)
T KOG0360|consen 404 TLESKSVVPGGGAVETALSIYLENFATSVGSREQLAIAEFAAALLSIPKTLAVNAAKDSTELVTKLRAYHSVSQDNPWRL 483 (545)
T ss_pred HhccCccccCccHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhcchHHHhhhhccccccccccccCCchhhccCCccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998653222
Q ss_pred -CCceeEecCCCCccccccCCcccchHHHHHHHHHHHHHHHHHHchhHhhcCCCcCC
Q 008527 478 -GAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPKVVC 533 (562)
Q Consensus 478 -~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~iI~~~~~~~ 533 (562)
..++|+|+.+|++.|.++.|++||..+|...|+.|+|.+..+||||++|.-.|...
T Consensus 484 ~~k~~GldL~ng~~~dn~~~g~~ep~~~kvksLk~ateaaitiLriD~li~l~~~~~ 540 (545)
T KOG0360|consen 484 LLKQYGLDLINGKIRDNKSAGSFEPPIVKVKSLKFATEAAITILRIDDLIKLLPELQ 540 (545)
T ss_pred cchhhCccccccEeecceeeeeeccceeehhhhHHHHHhhhhhcchhhhhhcCcccc
Confidence 25899999999999999999999999999999999999999999999998776543
No 39
>KOG0362 consensus Chaperonin complex component, TCP-1 theta subunit (CCT8) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.9e-86 Score=663.54 Aligned_cols=520 Identities=27% Similarity=0.457 Sum_probs=479.5
Q ss_pred Cccc-Cc-hhHhhccccccccccHH-HHHHHHHHHHHHHHHhhhccCCCCCceeeeCCCCCeEEecCHHHHhccccccCh
Q 008527 1 MAAM-MQ-PQIILLKEGTDTSQGKA-QLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHP 77 (562)
Q Consensus 1 ~~~~-~~-~~~~~~~~~~~~~~g~~-~~~~n~~~~~~l~~iv~sslGP~G~~kmI~~~~g~~~iTnDG~tIl~~l~~~hP 77 (562)
||.+ ++ +.-.++++|..+.+|.+ +...|++||+.++++++|+|||+||+|||+++.|+..+|||.+||+++|+++||
T Consensus 1 M~~~vp~a~~~q~~k~g~r~~~~~e~~v~~ni~a~~ela~~~rs~yGpng~nK~vvnh~~k~~~TndaatIlrelev~HP 80 (537)
T KOG0362|consen 1 MALTVPKAGIPQMLKEGARSPSGEEEAVIRNIAAVRELANVIRSAYGPNGRNKMVVNHLGKTFVTNDAATILRELEVEHP 80 (537)
T ss_pred CCccCCCCchhhHHhccccCcccchHHHHHHHHHHHHHHHHHHhhcCCCCcceeeecccceEEEcCChHHHHHHhhccCc
Confidence 5555 33 33446788887777754 999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccccCCchhHHHHHHHHHHHHHHHhHHCCCChhhHHHHHHHHHHHHHHHHHhhceeccCCChHHHHHH
Q 008527 78 AAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRL 157 (562)
Q Consensus 78 ~akll~~~~~~~~~~~GDGTtt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~v~~~~~~~~~~~ 157 (562)
++|||+++++.|+++.||||+++|+|+++||+++.+++..|++|.+|++||+.|.+.+++.|+++.+.. ..| .++
T Consensus 81 aakllv~a~~~q~~~iGDgtnfvvvla~~LLe~Ae~li~~Gl~~~ei~~gy~~A~~~~~e~l~~lv~~~-~~d----~~d 155 (537)
T KOG0362|consen 81 AAKLLVEATQMQEEEIGDGTNFVVVLAGALLEQAEELIRMGLTPAEISEGYETATKEALEILPELVVQS-IGD----LED 155 (537)
T ss_pred HHHHHHHHHHHHHHhhCCCceEeehhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHh-ccc----ccC
Confidence 999999999999999999999999999999999999999999999999999999999999999975541 111 122
Q ss_pred HHHHHHHhhccCccCchhHHHHHHHHHHHHHhCCC--CCCcceeEEEecCCCcccceeEEEEEEecccCCCcccCCccee
Q 008527 158 LSKCAATTLSSKLIGGEKEFFASMVVDAVGAIGDG--DRLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKF 235 (562)
Q Consensus 158 l~~ia~tsl~sk~~~~~~~~ls~li~~Av~~v~~~--~d~~~I~i~~i~gg~~~ds~li~Giv~~~~~~~~~~~~~~~~l 235 (562)
....+++++.||... ..+++++++++|+..+.+. .+.++|+++|+.|++.++|+++.|++|++... ..+++-
T Consensus 156 ~~~~~rs~i~skq~~-~ed~l~~lVa~ac~si~p~~~FnvdnIrVcKi~Gg~l~~S~Vv~GmVfkr~~e-----G~v~~a 229 (537)
T KOG0362|consen 156 KEWALRSVIMSKQYG-NEDFLTKLVAKACVSILPLMSFNVDNIRVCKILGGGLEDSCVVCGMVFKRDPE-----GEVKSA 229 (537)
T ss_pred hHHHHHHHHHHhhcc-hHHHHHHHHHHHHHhhcccccccccceEEEEEecCCcccceeeEEEEeccccC-----Cccccc
Confidence 238889999998754 5789999999999999876 37899999999999999999999999998864 335778
Q ss_pred cCceEEEeeccccccccccCceEEecCHHhHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcccHHHHHHHHhcCccccC
Q 008527 236 LNPKILLLNIELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAG 315 (562)
Q Consensus 236 ~n~kIll~~~~Le~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lIi~~~~v~~~al~~l~~~~I~~v~ 315 (562)
+++||.+++||++...+++++++.+++++++..|.+.|+..+..+++.+...|+++|++.+.|++++++||++.+|++++
T Consensus 230 k~arvAvf~cP~d~~~TEtkgTvLi~~A~el~~FSKgEe~lle~~vk~Ia~~gvkViV~~g~V~em~Lhflnky~ImVlq 309 (537)
T KOG0362|consen 230 KDARVAVFACPFDIAQTETKGTVLLKNAKELLNFSKGEEALLEEQVKAIADAGVKVIVSGGKVDEMTLHFLNKYKIMVLQ 309 (537)
T ss_pred ccceeEEEecCCCcccccCcceeeecCcHhhhhhccccHHHHHHHHHHHHhcCCeEEEecCccchhhhhhhccccEEEEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHhCCeEecccCCCCCCcccccceEEEEEECCeEEEEEEcCC-CCceEEEEeecCCHHHHHHHHHHHHH
Q 008527 316 RVAEEDLLRVAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCP-SGRTATIVLRGGADQFIEEAERSLHD 394 (562)
Q Consensus 316 ~v~~~~Le~Ia~~TGa~ii~sl~~l~~~~lG~~~~v~~~~ig~~~~~~~~g~~-~~~~~TIll~G~t~~~l~e~k~~i~d 394 (562)
--++.||.|+++..||++++++..+....+|+|+++...++|+.+++.|.... ..+..|++|||++...+|+.||+++|
T Consensus 310 i~Sk~eLrrlcrtvGA~~l~rl~~P~~~~lG~~d~V~~~EiG~~~v~vF~~e~~~~~~~TvVLRgst~s~LDd~ERAVdd 389 (537)
T KOG0362|consen 310 INSKFDLRRLCRTVGATALPRLFPPAPEELGYCDSVSTQEIGDTLVVVFRWESTGTRVATVVLRGATQSILDDAERAVDD 389 (537)
T ss_pred eccHhhHHHHHHHcCCccchhccCCCCccccccceeeeeecCCceEEEEeeccCCCceeEEEEcccchhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999643 56789999999999999999999999
Q ss_pred HHHHHHHHHhCCceeccCCccHHHHHHHHHHHhhhccchHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHhccCC
Q 008527 395 AIMIVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALP 474 (562)
Q Consensus 395 al~~~~~~l~~~~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~ 474 (562)
+++..+...++++++||+|++|++|+..|.+++...++..|++++.|++||+.+|++|++|+|++..+++++|...|..
T Consensus 390 gV~tyK~l~~d~rLlpGagatEieLak~i~~~g~~~~Gl~q~Aik~fa~Ale~~PktlaEnagl~~~evia~ly~~h~~- 468 (537)
T KOG0362|consen 390 GVNTYKALCSDSRLLPGAGATEIELAKQISSRGATLPGLKQLAIKKFAEALEVLPKTLAENAGLAVTEVIAKLYAVHQG- 468 (537)
T ss_pred hHHHhhhhccCCccccCCchhHHHHHHHHHHhcccCCCcchhHHHHHHHHhccccHhHHHhcCCcHHHHHHHHHHhhcC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999863
Q ss_pred CCCCCceeEecCCC-CccccccCCcccchHHHHHHHHHHHHHHHHHHchhHhhcCCCcCCCc
Q 008527 475 TGEGAPYGVDINTG-GIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPKVVCKQ 535 (562)
Q Consensus 475 ~~~~~~~Gid~~~g-~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~iI~~~~~~~~~ 535 (562)
| .+.|+|+... ...|+.+.||||-+..|.++++.|+|+|.++|++|+||+.+|..+|+
T Consensus 469 -g--~~~g~di~~e~~~~d~~~~~i~D~~~~K~~a~k~at~aa~tvl~vDqiimak~aggp~ 527 (537)
T KOG0362|consen 469 -G--KNLGMDIEAEGGTIDVREEGIWDTLAVKAQAIKLATEAALTVLTVDQIIMAKKAGGPK 527 (537)
T ss_pred -C--CcceeeeeccccccChhhhchHHHHHHHHHHHHHHHhhhheeeehhheeEecccCCCC
Confidence 3 5688888766 58999999999999999999999999999999999999998876554
No 40
>KOG0359 consensus Chaperonin complex component, TCP-1 zeta subunit (CCT6) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-81 Score=620.65 Aligned_cols=503 Identities=26% Similarity=0.464 Sum_probs=477.6
Q ss_pred ccccccccHHHHHHHHHHHHHHHHHhhhccCCCCCceeeeCCCCCeEEecCHHHHhccccccChHHHHHHHHHHhccccc
Q 008527 14 EGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEV 93 (562)
Q Consensus 14 ~~~~~~~g~~~~~~n~~~~~~l~~iv~sslGP~G~~kmI~~~~g~~~iTnDG~tIl~~l~~~hP~akll~~~~~~~~~~~ 93 (562)
...+..+-.++..-|+.++..+.+++++.+||.|..||++++.|++.+|+||.+.+++|+++||.+-++..++.+|++..
T Consensus 8 pkAEv~~~~aal~iNis~AigLqsV~~snlgPkgt~KmlvsgagdIklakdgnvLl~emQiqhPTa~lIakaatAqdd~t 87 (520)
T KOG0359|consen 8 PKAEVAQHQAALALNISAAIGLQSVLVLNLGPKGTEKMLVSGAGDIKLAKDGNVLLKEMQIQHPTASLIAKVATAQDDIT 87 (520)
T ss_pred cHHHHHhhhcceeeccccccceeeeehhccCchhHHHhccCCccceEEEecchhhHHHHhhcCchHHHHHHHHHHhhccc
Confidence 33344455678888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHHHHhHHCCCChhhHHHHHHHHHHHHHHHHHhhceeccCCChHHHHHHHHHHHHHhhccCccCc
Q 008527 94 GDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGG 173 (562)
Q Consensus 94 GDGTtt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~v~~~~~~~~~~~l~~ia~tsl~sk~~~~ 173 (562)
||||||+|+|++++++++...+..|+||..|..||+.|.+.++++|++.+.+++ ++.|..+++|++++|....
T Consensus 88 GDGttS~VlligEllkqa~~~i~eGlhprii~~gfe~a~~~~l~~L~k~~~~~~-------~~~L~~va~tsl~Tkv~~~ 160 (520)
T KOG0359|consen 88 GDGTTSVVLLIGELLKQADRYISEGLHPRIITEGFEAAKNKALEFLEKVSREVD-------RETLKDVARTSLRTKVHAE 160 (520)
T ss_pred CCCcceEEEeeHHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHhhhhccccchh-------HHHHHHHHHHhhcCcccHH
Confidence 999999999999999999999999999999999999999999999997777665 6899999999999999988
Q ss_pred hhHHHHHHHHHHHHHhCCCC---CCcceeEEEecCCCcccceeEEEEEEecccCCCcccCCcceecCceEEEeecccccc
Q 008527 174 EKEFFASMVVDAVGAIGDGD---RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNIELELK 250 (562)
Q Consensus 174 ~~~~ls~li~~Av~~v~~~~---d~~~I~i~~i~gg~~~ds~li~Giv~~~~~~~~~~~~~~~~l~n~kIll~~~~Le~~ 250 (562)
-.+.+++++++|+..+.... |+..+.+.++...+..|+.+++|+++||+..||. ||++.+|+.||++|-+|||+
T Consensus 161 la~~lt~~vv~aVl~i~~~~~~idl~mveim~mq~~s~~dT~~v~glvLdhg~rHpd---mp~~~e~a~iL~~NvSLEYE 237 (520)
T KOG0359|consen 161 LADVLTPIVVDSVLCIRRQEEPIDLFMVEIMEMQHKSLHDTSLVQGLVLDHGARHPD---MPRRVEDAYILICNVSLEYE 237 (520)
T ss_pred HHhHhHHHHHhhheeeccCCCCcchhHHHhhhhccCchhhhHHhhhhhccCCCCCcc---cccchhceEEEEeecccccc
Confidence 89999999999999887432 7888999999888999999999999999999986 68999999999999999999
Q ss_pred ccccCceEEecCHHhHHHHHHHHHHHHHHHHHHHHHcCCe----EEEEcCcccHHHHHHHHhcCccccCCCChHHHHHHH
Q 008527 251 SEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAK----VVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVA 326 (562)
Q Consensus 251 ~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~----lIi~~~~v~~~al~~l~~~~I~~v~~v~~~~Le~Ia 326 (562)
+++.++.+.+++.+|.+.+...|++++...+++|++++.. +||+++++||..++.|.+.||+++++.+++.|||+.
T Consensus 238 K~EinsgffYsta~ere~L~~~eR~Fi~~r~~kiielk~~vc~fvvinqkGidp~sld~~a~~gIlaLRRAKRRNmERL~ 317 (520)
T KOG0359|consen 238 KPEINSGFFYSTAEEREVLVLAERKFIDQRVRKIIELKRKVCEFVVINQKGIDPTSLDSLAKSGILALRRAKRRNMERLV 317 (520)
T ss_pred ccccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcceEEEecccCCCCCcchhhhhcchHHHHHHhhhhHHHHH
Confidence 9999999999999999999999999999999999988754 678999999999999999999999999999999999
Q ss_pred HHhCCeEecccCCCCCCcccccceEEEEEECCeEEEEEEcCCCCceEEEEeecCCHHHHHHHHHHHHHHHHHHHHHHhCC
Q 008527 327 AATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNS 406 (562)
Q Consensus 327 ~~TGa~ii~sl~~l~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~~~~TIll~G~t~~~l~e~k~~i~dal~~~~~~l~~~ 406 (562)
.++|+..++++++++++.+|+|+.+++..+|+++|+|+++|+++..|||+++||+...+.+.|++++|++++++++++++
T Consensus 318 lacGG~a~nsvddLtp~~LG~aglVye~tlGEEkfTFIE~~~~p~S~TiLikgpnkht~tQikdairdglrav~ntl~d~ 397 (520)
T KOG0359|consen 318 LACGGEAVNSVDDLTPDYLGYAGLVYEYTLGEEKFTFIEKCNNPSSVTILIKGPNKHTITQIKDAIRDGLRAVKNTLEDK 397 (520)
T ss_pred HhhccceecccccCChhhccccceeEEeeccceeeEeeecCCCCcceEEEEeCCccchHHHHHHHHhhHHHHHHHHhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeccCCccHHHHHHHHHHHhhhccchHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHhccCCCCCCCceeEecC
Q 008527 407 TVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDIN 486 (562)
Q Consensus 407 ~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~~~~Gid~~ 486 (562)
.++||+|++|..++++|+...++.+++.++++++|++||..+|++|++|+|+|+.+.+.+|...|.. ...|+|+.
T Consensus 398 ~~i~Gaga~~va~~~~lr~~k~~vkgra~~g~~afa~all~ipk~La~nsg~D~qe~l~~l~~e~~~-----~~~g~dl~ 472 (520)
T KOG0359|consen 398 CGIPGAGAFEVALGRHLRESKKSVKGRAYLGVKAFANALLVIPKTLAKNSGLDEQETLVSLKKEHEV-----TLRGLDLF 472 (520)
T ss_pred ccccCchHHHHHHHHHHHHhhhccCchhhhhHHHHHhhhhhhhHHHHHhcCCchHHHHHHHHHhhhh-----hhcccccc
Confidence 9999999999999999998888899999999999999999999999999999999999999998865 45699999
Q ss_pred CCCccccccCCcccchHHHHHHHHHHHHHHHHHHchhHhhcCCCc
Q 008527 487 TGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPKV 531 (562)
Q Consensus 487 ~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~iI~~~~~ 531 (562)
+|+-.+....||||.+.||.+.|..++-+|+.||-+|+++.....
T Consensus 473 ~g~~~~~~~~gi~Dny~v~~~~l~s~~via~nlLlvDEi~rAG~~ 517 (520)
T KOG0359|consen 473 RGEECDPSRKGIYDNYSVKKQLLRSEAVIATNLLLVDEIIRAGMS 517 (520)
T ss_pred cCCccchhhccccchHHHHHHHhhhhHHHHHHHHHHHHHHHcccc
Confidence 999999999999999999999999999999999999999987643
No 41
>KOG0357 consensus Chaperonin complex component, TCP-1 epsilon subunit (CCT5) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.7e-69 Score=517.98 Aligned_cols=387 Identities=31% Similarity=0.540 Sum_probs=361.2
Q ss_pred CchhHhhcccc--ccccccHHHHHHHHHHHHHHHHHhhhccCCCCCceeeeCCCCCeEEecCHHHHhccccccChHHHHH
Q 008527 5 MQPQIILLKEG--TDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKIL 82 (562)
Q Consensus 5 ~~~~~~~~~~~--~~~~~g~~~~~~n~~~~~~l~~iv~sslGP~G~~kmI~~~~g~~~iTnDG~tIl~~l~~~hP~akll 82 (562)
+++|-.++++. ..+..|.++.++|+.+.+++++++++|+||+|++|+++.+.|++.+|||| .|++++++
T Consensus 8 ~~~~~iiLrDQd~~~Ri~G~ea~Ks~I~agkaVA~~lrtSLGPkGlDK~l~~pdgditvtndg---------d~~IakLm 78 (400)
T KOG0357|consen 8 FGRPFIILRDQERKDRLFGLDAVKSHIGAAKAVARILRTSLGPKGLDKMLVSPDGDITVTNDG---------VHQIAKLI 78 (400)
T ss_pred hcCceEEeeeccCCchhhHHHHhhhhhHHHHHHHHHHHhhcCccccccccccCCCCceeeecc---------chHHHHHH
Confidence 33444455433 37789999999999999999999999999999999999999999999999 78999999
Q ss_pred HHHHHhcccccCCchhHHHHHHHHHHHHHHHhHHCCCChhhHHHHHHHHHHHHHHHHHhhceeccCCChHHHHHHHHHHH
Q 008527 83 VDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCA 162 (562)
Q Consensus 83 ~~~~~~~~~~~GDGTtt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~v~~~~~~~~~~~l~~ia 162 (562)
...+..|+.++|||||.+++|++.+++++.+++.+|+||..|.+||..+...+++.|++.+.+++
T Consensus 79 v~LS~sqd~eIgdGtTgVvvLa~alleqa~~li~~~ihpiki~~g~e~~~~~av~~l~~i~~~~e--------------- 143 (400)
T KOG0357|consen 79 VILSKSQDDEIGDGTTGVVVLAGALLEQAHELIDRGIHPIKIAQGYEKAKVVAVEHLDEISDPFE--------------- 143 (400)
T ss_pred HHhcccchhhhccCCcccEEecccchHhHHhhcccccchhHHHHhhhhHHHhhhhhhhhhccccc---------------
Confidence 99999999999999999999999999999999999999999999999999998887766543311
Q ss_pred HHhhccCccCchhHHHHHHHHHHHHHhCCCCCCcceeEEEecCCCcccceeEEEEEEecccCCCcccCCcceecCceEEE
Q 008527 163 ATTLSSKLIGGEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILL 242 (562)
Q Consensus 163 ~tsl~sk~~~~~~~~ls~li~~Av~~v~~~~d~~~I~i~~i~gg~~~ds~li~Giv~~~~~~~~~~~~~~~~l~n~kIll 242 (562)
T Consensus 144 -------------------------------------------------------------------------------- 143 (400)
T KOG0357|consen 144 -------------------------------------------------------------------------------- 143 (400)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeccccccccccCceEEecCHHhHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcccHHHHHHHHhcCccccCCCChHHH
Q 008527 243 LNIELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDL 322 (562)
Q Consensus 243 ~~~~Le~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lIi~~~~v~~~al~~l~~~~I~~v~~v~~~~L 322 (562)
+..+++++++.|+++++|+|++||+|.++|.+++..+++||.-.++
T Consensus 144 ----------------------------------f~emi~~vK~~ga~l~icqwgfddeanhll~~n~lpavrwVGGpEi 189 (400)
T KOG0357|consen 144 ----------------------------------FEEMIQQIKETGANLAICQWGFDDEANHLLLQNNLPAVRWVGGPEI 189 (400)
T ss_pred ----------------------------------HHHHHHHHHhhCCcEEEEecccCchhhhHHhhcCCCceeecCCcce
Confidence 2466888999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCeEecccCCCCCCcccccceEEEEEEC--CeEEEEEEcCCCCceEEEEeecCCHHHHHHHHHHHHHHHHHHH
Q 008527 323 LRVAAATGGTVQTSVNNVVDEVLGTCEHFEERQVG--NERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVR 400 (562)
Q Consensus 323 e~Ia~~TGa~ii~sl~~l~~~~lG~~~~v~~~~ig--~~~~~~~~g~~~~~~~TIll~G~t~~~l~e~k~~i~dal~~~~ 400 (562)
|.||..||++|+++|++++++.||+|+.+++..+| .+|+..+++|++++.+||.+||.+..+++|.||++|||||++|
T Consensus 190 EliAiaT~grIVprF~eL~~~kLG~aglVrE~sfgttkdkmlviEqc~nskaVTifvRg~Nkmii~EakrslhdalCvir 269 (400)
T KOG0357|consen 190 ELIAIATGGRIVPRFSELTAEKLGFAGLVREISFGTTKDKMLVIEQCKNSKAVTIFVRGGNKMIIEEAKRSLHDALCVIR 269 (400)
T ss_pred EEEEeecCCeeeccHhhhCHhhccccceEEEEecccccceEEEEEecCCCceEEEEEecCcceeHHHHHHHhhhhHHHHH
Confidence 99999999999999999999999999999999998 5899999999999999999999999999999999999999999
Q ss_pred HHHhCCceeccCCccHHHHHHHHHHHhhhccchHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHhccCCCCCCCc
Q 008527 401 RATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAP 480 (562)
Q Consensus 401 ~~l~~~~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~~~ 480 (562)
+.+++.|+|+|||++|+.||-++.+.+.++++.+|+++++||+||++||..|++|+|++|++.++++++.+..+ ++ ++
T Consensus 270 nlird~rivYgGGaaEiscslav~~ead~~~g~eqya~rafa~ale~ipmalaensgl~pi~~ls~~ka~q~~~-~~-~~ 347 (400)
T KOG0357|consen 270 NLIRDNRVVYGGGAAEISCALAVSQEADKIPGIEQYAFRAFADALESIPMALAENSGLDPIETLSDVKARQVKE-MN-PA 347 (400)
T ss_pred HHhhcCeeEecCchHHhhhhhHhhHhhccCCcHHHHHHHHHHHHHhhcchhhhhccCCCchhhhhHhHHHHHHh-cC-cc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999876552 45 89
Q ss_pred eeEecCCCCccccccCCcccchHHHHHHHHHHHHHHHHHHchhHhhcCCCc
Q 008527 481 YGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPKV 531 (562)
Q Consensus 481 ~Gid~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~iI~~~~~ 531 (562)
+|+|+.-..-.||.+.+|+||+..|++.+..|++++.|||+||+++....+
T Consensus 348 lGidcl~~G~nDMk~~~vie~l~~KkqQi~laTQ~vrMiLKiddv~~~~~~ 398 (400)
T KOG0357|consen 348 LGIDCLHKGTNDMKEQHVIETLIGKKQQISLATQMVRMILKIDDVRKPGES 398 (400)
T ss_pred cCcchhccCchhhhhhccHHHhhhhHHHHHHHHHHHHHhhhccceecCCCC
Confidence 999998888999999999999999999999999999999999999876543
No 42
>KOG0356 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.8e-61 Score=492.82 Aligned_cols=462 Identities=23% Similarity=0.325 Sum_probs=412.5
Q ss_pred ccccccHHHHHHHHHHHHHHHHHhhhccCCCCCceeeeCCCCCeEEecCHHHHhccccccChH----HHHHHHHHHhccc
Q 008527 16 TDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPA----AKILVDIAKSQDS 91 (562)
Q Consensus 16 ~~~~~g~~~~~~n~~~~~~l~~iv~sslGP~G~~kmI~~~~g~~~iTnDG~tIl~~l~~~hP~----akll~~~~~~~~~ 91 (562)
.+..+|.++|...++++..|+++|.+|+||+||+++|.++.|.|.|||||.|+.+++.++++. ++++++++.+.++
T Consensus 17 k~i~fg~~~r~~ll~Gv~~Ladav~~TlgpKgrnViieq~~gsPkvtkdgvTva~si~l~d~~~n~gaklvq~va~~tN~ 96 (550)
T KOG0356|consen 17 KDIKFGKDVRAKLLQGVDLLADAVAVTLGPKGRNVIIEQSWGSPKVTKDGVTVAKSIELKDKYENIGAKLVQDVANNTNE 96 (550)
T ss_pred cccccCHHHHHHHHhhHHHHHHHhhhhccCCcceEEcccccCCCceecCCceeeccccccchhhhhccHHHHHHHhhccC
Confidence 367899999999999999999999999999999999999999999999999999999999995 8999999999999
Q ss_pred ccCCchhHHHHHHHHHHHHHHHhHHCCCChhhHHHHHHHHHHHHHHHHHhhceeccCCChHHHHHHHHHHHHHhhccCcc
Q 008527 92 EVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLI 171 (562)
Q Consensus 92 ~~GDGTtt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~v~~~~~~~~~~~l~~ia~tsl~sk~~ 171 (562)
..||||||+++|+.++..++.+-+.+|.+|..+.+|+..+.+.+.+.|.++|+||.+. +.+.++|.+|
T Consensus 97 ~agdGtttatvlar~i~~eg~~~v~~G~npv~irrGi~~av~~vv~~L~k~sk~Vtt~------eeIaqVAtiS------ 164 (550)
T KOG0356|consen 97 EAGDGTTTATVLARAIAKEGFEKVAKGANPVEIRRGIMLAVDAVVDELKKMSKPVTTP------EEIAQVATIS------ 164 (550)
T ss_pred ccccCcchHHHHHHHHHHHHHHHHhccCCchhhhhhHHHHHHHHHHHHHHhCCCCCCH------HHHHHHHhhh------
Confidence 9999999999999999999999999999999999999999999999999999999874 6899999988
Q ss_pred CchhHHHHHHHHHHHHHhCCCCCCcceeEEEec-CCCccc-ceeEEEEEEecccCCCcccC----CcceecCceEEEeec
Q 008527 172 GGEKEFFASMVVDAVGAIGDGDRLNMIGIKKVP-GGTMRD-SFLVNGVAFKKTFSYAGFEQ----QPKKFLNPKILLLNI 245 (562)
Q Consensus 172 ~~~~~~ls~li~~Av~~v~~~~d~~~I~i~~i~-gg~~~d-s~li~Giv~~~~~~~~~~~~----~~~~l~n~kIll~~~ 245 (562)
++.+..+.+++.+|+.+++++ +|+.+. |....| .++++|+-|+++|.+|||.+ +..++++|+++|.+.
T Consensus 165 AngD~~ig~li~~a~~kvG~~------GVItv~~gkt~~delev~eGmkfdrGyiSPyfi~~~k~~~~e~e~~~~ll~~k 238 (550)
T KOG0356|consen 165 ANGDKEIGNLISDAMKKVGRK------GVITVKDGKTLEDELEVIEGMKFDRGYISPYFITSSKKQKVEFENALLLLSEK 238 (550)
T ss_pred cCCcHHHHHHHHHHHHHhCcC------CeEEeecCCccccchhhhhcccccccccCccccccchhhhhhhhhhhhhhhhh
Confidence 678899999999999999988 777774 555554 68999999999999999953 446899999999887
Q ss_pred cccccccccCceEEecCHHhHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcccHHHHHHHHh----cC-------cccc
Q 008527 246 ELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFAD----RD-------IFCA 314 (562)
Q Consensus 246 ~Le~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lIi~~~~v~~~al~~l~~----~~-------I~~v 314 (562)
++ +++++ +.+.++.-.+...++++.+..++.+++..|-- -| ...|
T Consensus 239 ki-------------~~v~~-----------ivp~LE~A~~~~~PLliIAeDi~~eaL~tLIlNkLk~glqV~AvKapgf 294 (550)
T KOG0356|consen 239 KI-------------SSVQS-----------IVPALELALAKRRPLLIIAEDIDGEALATLVLNKLKGGLQVVAVKAPGF 294 (550)
T ss_pred hh-------------hHHHH-----------HhHHHHHhhhccCceEEEehhcchhHHHHHHhhhhccceeEEEEecCCC
Confidence 64 45555 56778888888889999999999988887642 22 2236
Q ss_pred CCCChHHHHHHHHHhCCeEec------ccCCCCCCcccccceEEEEE---------------------------------
Q 008527 315 GRVAEEDLLRVAAATGGTVQT------SVNNVVDEVLGTCEHFEERQ--------------------------------- 355 (562)
Q Consensus 315 ~~v~~~~Le~Ia~~TGa~ii~------sl~~l~~~~lG~~~~v~~~~--------------------------------- 355 (562)
++-+++.+.+++.+||+.++. +++..+.+++|.|..+....
T Consensus 295 Gdnrk~~l~Diai~Tg~~v~~~e~~~l~le~~~~~dLG~~~evvvtkd~t~ll~g~~~~~~v~~rIeqik~~~e~t~~~y 374 (550)
T KOG0356|consen 295 GDNRKNLLKDIAILTGATVFGEELSTLNLEDAKLEDLGEVGEVVVTKDDTMLLKGKGNKAQVEGRIEQIKEMIEETTSDY 374 (550)
T ss_pred cchHHHhhhHHHHHhhhhhhccchhhcccccCchhhcCcceeEEEecCcceeeCCCCCHHHHHHHHHHHHHHHHhhhhhh
Confidence 888999999999999999986 35677778999999887542
Q ss_pred ---ECCeEEEEEEcCCCCceEEEEeecCCHHHHHHHHHHHHHHHHHHHHHHhCCceeccCCccHHHHHHHHHHHhhhccc
Q 008527 356 ---VGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAG 432 (562)
Q Consensus 356 ---ig~~~~~~~~g~~~~~~~TIll~G~t~~~l~e~k~~i~dal~~~~~~l~~~~vvpGGG~~E~~l~~~L~~~~~~~~~ 432 (562)
..++|...|+|+ +++|.++|.++.+++|.+.+++|||+++++++++| +|||||++.++|+..|.+....-+.
T Consensus 375 e~ekl~er~a~ls~g----vavi~vGg~se~Ev~ekk~rv~dalnat~aaveeG-ivpGGG~all~~~~~l~~lk~~~~~ 449 (550)
T KOG0356|consen 375 EKEKLNERLAKLSGG----VAVIKVGGHSEVEVNEKKDRVEDALNATRAAVEEG-IVPGGGTALLRAIPVLDELKATNNF 449 (550)
T ss_pred hHhHHHHHHHHhcCC----eEEEEecCcchhhhhhhhhhHHHHHHHHHHHhhcC-cccCCchHHHHhhhhhhhcccccch
Confidence 124567777776 99999999999999999999999999999999999 9999999999999999987764456
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHhccCCCCCCCceeEecCCCCccccccCCcccchHHHHHHHHHH
Q 008527 433 KSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAA 512 (562)
Q Consensus 433 ~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~l~~A 512 (562)
+++.+++++.+||..|.++|++|||.|+..++.+++. ..+|||..+|+++||.+.||+||+.|.+.+|..|
T Consensus 450 ~~k~G~eiv~~Al~~P~~~IakNAGvdg~~vv~Kv~~---------~~~gyda~~~ey~dlv~~GiidP~kVvr~al~~a 520 (550)
T KOG0356|consen 450 DQKVGVEIVKKALRLPAQTIAKNAGVDGSVVVEKVLN---------DDYGYDAAKGEYVDLVEAGIIDPTKVVRTALTDA 520 (550)
T ss_pred HhhhhHHHHHHHHhhhHHHHHHhcCCchHHHHHHHHh---------hhhhhhhhcccHHHHHhccCCChHHHHHHhhhhh
Confidence 7788899999999999999999999999999999983 3479999999999999999999999999999999
Q ss_pred HHHHHHHHchhHhhcCCCcCC
Q 008527 513 TEAACLILSVDETVKNPKVVC 533 (562)
Q Consensus 513 ~e~a~~iL~iD~iI~~~~~~~ 533 (562)
..+|+++++++.+|...|.+.
T Consensus 521 ~~vasll~tte~vvteipk~~ 541 (550)
T KOG0356|consen 521 AGVASLLTTTEAVVTEIPKEE 541 (550)
T ss_pred hHHHHHHhhheeEEEeccccc
Confidence 999999999999998877655
No 43
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1. Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins.
Probab=100.00 E-value=2.8e-39 Score=321.43 Aligned_cols=228 Identities=25% Similarity=0.392 Sum_probs=211.3
Q ss_pred CchhHHHHHHHHHHHHHhCCC-----C-CCc-ceeEEEecCCCcccceeEEEEEEecccCCCcccCCcceecCceEEEee
Q 008527 172 GGEKEFFASMVVDAVGAIGDG-----D-RLN-MIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLN 244 (562)
Q Consensus 172 ~~~~~~ls~li~~Av~~v~~~-----~-d~~-~I~i~~i~gg~~~ds~li~Giv~~~~~~~~~~~~~~~~l~n~kIll~~ 244 (562)
..|.++|++++++|+..+.+. . |.+ +|+|++++||+++||++++|+++++++.++. ||++++||||++++
T Consensus 17 ~~~~~~ls~l~v~Av~~v~~~~~~~~~~di~~~I~I~ki~Ggs~~dS~li~Gvvi~k~~~~~~---m~~~i~n~kIlll~ 93 (261)
T cd03334 17 ESWLDILLPLVWKAASNVKPDVRAGDDMDIRQYVKIKKIPGGSPSDSEVVDGVVFTKNVAHKR---MPSKIKNPRILLLQ 93 (261)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCCccChhHceEEEEecCCCHHHcEEEeeEEEeCCCCCcc---CCcccCCCcEEEEe
Confidence 468899999999999998643 1 443 6999999999999999999999999998864 68999999999999
Q ss_pred ccccccccccCceEEecCHHhHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcccHHHHHHHHhcCccccCCCChHHHHH
Q 008527 245 IELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLR 324 (562)
Q Consensus 245 ~~Le~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lIi~~~~v~~~al~~l~~~~I~~v~~v~~~~Le~ 324 (562)
++|++++++. ++++++++++.|++++.+++++|++.|++||+++++|++.+++||.++||++++++++++|+|
T Consensus 94 ~~Le~~~~~~-------~~~~~~~~~~~E~~~l~~~v~kI~~~g~nvIl~~k~I~~~a~~~l~k~gI~~v~~v~~~dl~r 166 (261)
T cd03334 94 GPLEYQRVEN-------KLLSLDPVILQEKEYLKNLVSRIVALRPDVILVEKSVSRIAQDLLLEAGITLVLNVKPSVLER 166 (261)
T ss_pred eeeccccccC-------CHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCccCHHHHHHHHHCCCEEEEecCHHHHHH
Confidence 9999998863 568899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCeEecc-cCCCCCCcccccceEEEEEECC-----eEEEEEEcCCCCceEEEEeecCCHHHHHHHHHHHHHHHHH
Q 008527 325 VAAATGGTVQTS-VNNVVDEVLGTCEHFEERQVGN-----ERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMI 398 (562)
Q Consensus 325 Ia~~TGa~ii~s-l~~l~~~~lG~~~~v~~~~ig~-----~~~~~~~g~~~~~~~TIll~G~t~~~l~e~k~~i~dal~~ 398 (562)
||++|||+++++ .++++++.+|+|+.|++.++|+ ++|++|+||+.++.+||+|||+|+..++|+||+++||+++
T Consensus 167 Ia~~tGa~ii~~i~~~~~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~~~~~TIlLRG~t~~~lde~eR~i~Dal~v 246 (261)
T cd03334 167 ISRCTGADIISSMDDLLTSPKLGTCESFRVRTYVEEHGRSKTLMFFEGCPKELGCTILLRGGDLEELKKVKRVVEFMVFA 246 (261)
T ss_pred HHHHhCCEEecChhhhcCcccCcCcceEEEEEecCcCCCceeEEEEecCCCCceeEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 999999999999 4588999999999999999996 6999999999999999999999999999999999999999
Q ss_pred HHHHHhCCcee
Q 008527 399 VRRATKNSTVV 409 (562)
Q Consensus 399 ~~~~l~~~~vv 409 (562)
++++..++.++
T Consensus 247 ~~~~~le~~~~ 257 (261)
T cd03334 247 AYHLKLETSFL 257 (261)
T ss_pred HHHHHHhHHHH
Confidence 99998887543
No 44
>cd03333 chaperonin_like chaperonin_like superfamily. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. This superfamily also contains related domains from Fab1-like phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases that only contain the intermediate and apical domains.
Probab=100.00 E-value=2.7e-36 Score=292.17 Aligned_cols=205 Identities=43% Similarity=0.692 Sum_probs=195.7
Q ss_pred HHHHHHHHHhhccCccCchhHHHHHHHHHHHHHhCCCC---CCcceeEEEecCCCcccceeEEEEEEecccCCCcccCCc
Q 008527 156 RLLSKCAATTLSSKLIGGEKEFFASMVVDAVGAIGDGD---RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQP 232 (562)
Q Consensus 156 ~~l~~ia~tsl~sk~~~~~~~~ls~li~~Av~~v~~~~---d~~~I~i~~i~gg~~~ds~li~Giv~~~~~~~~~~~~~~ 232 (562)
+.|.++|+|+++||+ +.|.+.+++++++|+..+++++ +.++|+|++++||+++||++++|++|++++.|++| |
T Consensus 2 ~~l~~ia~ts~~sk~-~~~~~~l~~l~~~Av~~v~~~~~~~~~~~I~i~~~~gg~~~ds~li~Gv~~~~~~~~~~m---~ 77 (209)
T cd03333 2 ELLLQVATTSLNSKL-SSWDDFLGKLVVDAVLKVGPDNRMDDLGVIKVEKIPGGSLEDSELVVGVVFDKGYASPYM---P 77 (209)
T ss_pred hHHHHHHHHHhccch-hhHHHHHHHHHHHHHHHhhccCCCCchHHEEEEEecCcChhhceeEeeEEEeccccCCCC---C
Confidence 478999999999999 9999999999999999998742 57899999999999999999999999999999875 8
Q ss_pred ceecCceEEEeeccccccccccCceEEecCHHhHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcccHHHHHHHHhcCcc
Q 008527 233 KKFLNPKILLLNIELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIF 312 (562)
Q Consensus 233 ~~l~n~kIll~~~~Le~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lIi~~~~v~~~al~~l~~~~I~ 312 (562)
++++||+|++++++|++ +|+++++|++.++++|.++||+
T Consensus 78 ~~~~n~~Ill~~~~le~-----------------------------------------vii~~~~I~~~al~~l~~~~I~ 116 (209)
T cd03333 78 KRLENAKILLLDCPLEY-----------------------------------------VVIAEKGIDDLALHYLAKAGIM 116 (209)
T ss_pred eEcCCCcEEEEeCCeeE-----------------------------------------EEEecCcccHHHHHHHHHCCCE
Confidence 99999999999999875 9999999999999999999999
Q ss_pred ccCCCChHHHHHHHHHhCCeEecccCCCCCCcccccceEEEEEECCeEEEEEEcCCCCceEEEEeecCCHHHHHHHHHHH
Q 008527 313 CAGRVAEEDLLRVAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSL 392 (562)
Q Consensus 313 ~v~~v~~~~Le~Ia~~TGa~ii~sl~~l~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~~~~TIll~G~t~~~l~e~k~~i 392 (562)
+++++++++|+|||++|||++++++++++++.+|+|+++++.++|+++|++|++|+.+..|||+|||+|+.+++|+||++
T Consensus 117 ~v~~~~~~~l~~ia~~tga~ii~~~~~~~~~~lG~~~~v~~~~~~~~~~~~~~~~~~~~~~tIllrG~t~~~l~e~kr~l 196 (209)
T cd03333 117 AVRRVKKEDLERIARATGATIVSSLEDLTPEDLGTAELVEETKIGEEKLTFIEGCKGGKAATILLRGATEVELDEVKRSL 196 (209)
T ss_pred EEEeCCHHHHHHHHHHHCCEEecccccCChhhceeeeEEEEEEECCeEEEEEEcCCCCCEEEEEEECCCHhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999899999999999999999999999
Q ss_pred HHHHHHHHHHHhC
Q 008527 393 HDAIMIVRRATKN 405 (562)
Q Consensus 393 ~dal~~~~~~l~~ 405 (562)
+||++++++++++
T Consensus 197 ~dal~~~~~~~~~ 209 (209)
T cd03333 197 HDALCAVRAAVEE 209 (209)
T ss_pred HHHHHHHHHHhhC
Confidence 9999999999864
No 45
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]
Probab=99.90 E-value=1.3e-23 Score=236.22 Aligned_cols=233 Identities=22% Similarity=0.342 Sum_probs=208.6
Q ss_pred CchhHHHHHHHHHHHHHhCCCC------C-CcceeEEEecCCCcccceeEEEEEEecccCCCcccCCcceecCceEEEee
Q 008527 172 GGEKEFFASMVVDAVGAIGDGD------R-LNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLN 244 (562)
Q Consensus 172 ~~~~~~ls~li~~Av~~v~~~~------d-~~~I~i~~i~gg~~~ds~li~Giv~~~~~~~~~~~~~~~~l~n~kIll~~ 244 (562)
..|.+.+..++.+|...+.++- | .+||+|++|.+|+..||+++.|+++.+..+|+. |..++++|+|+++.
T Consensus 331 ~~W~~ii~~L~~eaa~~~kp~~~~~~~md~~~YVkvK~I~~g~~~dS~vi~Gvv~sKn~~~k~---M~~~~e~prilll~ 407 (1598)
T KOG0230|consen 331 QEWLDIITSLCWEAANLLKPDTDSGGLMDPGNYVKVKCVAGGSRVDSEVIKGVVCSKNVAHKR---MATKYENPRILLLG 407 (1598)
T ss_pred hhHHHHHHHHHHHHHHhcCcCcccCCCcCcccceEEEEecCCCcccceeeeEEEeecchhhhh---hhhhccCCceEEEe
Confidence 3688999999999999988742 2 689999999999999999999999999999865 67999999999999
Q ss_pred ccccccccccCceEEecCHHhHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcccHHHHHHHHhcCccccCCCChHHHHH
Q 008527 245 IELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLR 324 (562)
Q Consensus 245 ~~Le~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lIi~~~~v~~~al~~l~~~~I~~v~~v~~~~Le~ 324 (562)
++|+|++... ....++.+.++|.++++.++.+|...+++++++.++|+..|+++|...+|.++-++++.-|+|
T Consensus 408 g~leyqrisn-------~lsS~etvlqqE~e~lk~~varI~s~~p~vllVeksVS~~aqe~L~~k~I~lvlnvK~s~leR 480 (1598)
T KOG0230|consen 408 GPLEYQRISN-------QLSSIETVLQQEKEYLKKVVARIESLRPDVLLVEKSVSRIAQELLLDKGISLVLNVKRSLLER 480 (1598)
T ss_pred cchhhhhhhc-------cccchHHHHhhHHHHHHHHHHHHHhcCCCeEEEechHHHHHHHHhhccCeEEEEeccHHHHHH
Confidence 9999987643 234566777779999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCeEecccCCCCCCcccccceEEEEEEC-----CeEEEEEEcCCCCceEEEEeecCCHHHHHHHHHHHHHHHHHH
Q 008527 325 VAAATGGTVQTSVNNVVDEVLGTCEHFEERQVG-----NERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIV 399 (562)
Q Consensus 325 Ia~~TGa~ii~sl~~l~~~~lG~~~~v~~~~ig-----~~~~~~~~g~~~~~~~TIll~G~t~~~l~e~k~~i~dal~~~ 399 (562)
|+++|||.|++++|.++...+|+|+.|+..++- .+.+.+|+||+++..|||+|||....++.++|+.++-++.++
T Consensus 481 IsR~tga~I~~siDslt~~klg~C~~F~v~~~~e~hk~sKTlmffegc~~~lG~TiLLrG~~~~eLkkVK~Vvq~~v~aa 560 (1598)
T KOG0230|consen 481 ISRCTGADIVPSVDSLTSQKLGYCELFRVENYVEEHKPSKTLMFFEGCPKPLGCTILLRGDSLEELKKVKHVVQYLVFAA 560 (1598)
T ss_pred HHHHhcCceecchhhhhccccCCCccHhhhhhhhcccchhhhHHhhcCCCCCCceEEecCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999877654 457999999999999999999999999999999999999999
Q ss_pred HHHHhCCceeccCCc
Q 008527 400 RRATKNSTVVAGGGA 414 (562)
Q Consensus 400 ~~~l~~~~vvpGGG~ 414 (562)
++..-+-.++.--|+
T Consensus 561 y~l~LE~SflaDe~a 575 (1598)
T KOG0230|consen 561 YHLALETSFLADEGA 575 (1598)
T ss_pred HHHHHhhhhhhccCC
Confidence 987655445555444
No 46
>PF09272 Hepsin-SRCR: Hepsin, SRCR; InterPro: IPR015352 This entry represents the extracellular domain of the serine protease hepsin. The domain is formed primarily by three elements of regular secondary structure: a 12-residue alpha helix, a twisted five-stranded antiparallel beta sheet, and a second, two-stranded, antiparallel sheet. The two beta-sheets lie at roughly right angles to each other, with the helix nestled between the two, adopting an SRCR fold. The exact function of this domain has not been identified, though it probably may serve to orient the protease domain or place it in the vicinity of its substrate []. ; GO: 0004252 serine-type endopeptidase activity, 0070008 serine-type exopeptidase activity; PDB: 3T2N_B 1Z8G_A 1P57_A 1O5E_L 1O5F_L.
Probab=41.92 E-value=11 Score=31.63 Aligned_cols=8 Identities=75% Similarity=1.560 Sum_probs=2.6
Q ss_pred eeeccCCC
Q 008527 551 LICQDCGL 558 (562)
Q Consensus 551 ~~~~~~~~ 558 (562)
.+|||||-
T Consensus 99 t~CQDCGR 106 (110)
T PF09272_consen 99 TICQDCGR 106 (110)
T ss_dssp EEE---S-
T ss_pred hhhhhhCc
Confidence 56777773
No 47
>cd00851 MTH1175 This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=37.23 E-value=52 Score=27.09 Aligned_cols=39 Identities=18% Similarity=0.176 Sum_probs=32.3
Q ss_pred HHHHHHHHcCCeEEEEcCcccHHHHHHHHhcCccccCCCC
Q 008527 279 DKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVA 318 (562)
Q Consensus 279 ~~v~~i~~~~~~lIi~~~~v~~~al~~l~~~~I~~v~~v~ 318 (562)
...+.+...++++|++. ++++.+...|.++||.++....
T Consensus 54 ~~~~~l~~~~v~~vi~~-~iG~~~~~~l~~~gI~v~~~~~ 92 (103)
T cd00851 54 KAAEFLADEGVDVVIVG-GIGPRALNKLRNAGIKVYKGAE 92 (103)
T ss_pred HHHHHHHHcCCCEEEeC-CCCcCHHHHHHHCCCEEEEcCC
Confidence 44556666899999996 6999999999999999986665
No 48
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=35.13 E-value=99 Score=27.01 Aligned_cols=40 Identities=20% Similarity=0.140 Sum_probs=33.9
Q ss_pred HHHHHHHHcCCeEEEEcCcccHHHHHHHHhcCccccCCCCh
Q 008527 279 DKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAE 319 (562)
Q Consensus 279 ~~v~~i~~~~~~lIi~~~~v~~~al~~l~~~~I~~v~~v~~ 319 (562)
...+.+++.|+++|++. .+++-+...|..+||-+..-.+.
T Consensus 56 ~~a~~l~~~gvdvvi~~-~iG~~a~~~l~~~GIkv~~~~~~ 95 (121)
T COG1433 56 RIAELLVDEGVDVVIAS-NIGPNAYNALKAAGIKVYVAPGG 95 (121)
T ss_pred HHHHHHHHcCCCEEEEC-ccCHHHHHHHHHcCcEEEecCCC
Confidence 45788889999999998 68999999999999988765553
No 49
>TIGR00129 fdhD_narQ formate dehydrogenase family accessory protein FdhD. FdhD in E. coli and NarQ in B. subtilis are required for the activity of formate dehydrogenase. The gene name in B. subtilis reflects the requirement of the neighboring gene narA for nitrate assimilation, for which NarQ is not required. In some species, the gene is associated not with a known formate dehydrogenase but with a related putative molybdopterin-binding oxidoreductase. A reasonable hypothesis is that this protein helps prepare a required cofactor for assembly into the holoenzyme.
Probab=33.89 E-value=35 Score=33.57 Aligned_cols=43 Identities=21% Similarity=0.281 Sum_probs=38.3
Q ss_pred HHHHHHHHHcCCeEEEEcCcccHHHHHHHHhcCccccCCCChH
Q 008527 278 YDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEE 320 (562)
Q Consensus 278 ~~~v~~i~~~~~~lIi~~~~v~~~al~~l~~~~I~~v~~v~~~ 320 (562)
.+++.|..+.|+++|++...-.+++.++..+.||+.++.++..
T Consensus 182 ~emv~Ka~~aGIpvlvS~sapT~lavelA~~~giTLigf~R~~ 224 (237)
T TIGR00129 182 SEMVQKAARCGVPIIASKSAPTDLAIEVAEESNITLIGFARNG 224 (237)
T ss_pred HHHHHHHHHcCCCEEEEcccchHHHHHHHHHhCCEEEEEecCC
Confidence 4678999999999999999999999999999999998877654
No 50
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=33.53 E-value=70 Score=25.79 Aligned_cols=37 Identities=16% Similarity=0.168 Sum_probs=30.3
Q ss_pred HHHHHHHHcCCeEEEEcCcccHHHHHHHHhcCccccCC
Q 008527 279 DKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGR 316 (562)
Q Consensus 279 ~~v~~i~~~~~~lIi~~~~v~~~al~~l~~~~I~~v~~ 316 (562)
.+.+.+...+++++++. .+++.+...|.++||-++..
T Consensus 44 ~~~~~l~~~~v~~li~~-~iG~~~~~~L~~~gI~v~~~ 80 (94)
T PF02579_consen 44 KIAKFLAEEGVDVLICG-GIGEGAFRALKEAGIKVYQG 80 (94)
T ss_dssp HHHHHHHHTTESEEEES-CSCHHHHHHHHHTTSEEEES
T ss_pred hHHHHHHHcCCCEEEEe-CCCHHHHHHHHHCCCEEEEc
Confidence 34455556799999887 58999999999999999876
No 51
>PRK00724 formate dehydrogenase accessory protein; Reviewed
Probab=31.49 E-value=39 Score=33.76 Aligned_cols=43 Identities=14% Similarity=0.165 Sum_probs=38.3
Q ss_pred HHHHHHHHHcCCeEEEEcCcccHHHHHHHHhcCccccCCCChH
Q 008527 278 YDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEE 320 (562)
Q Consensus 278 ~~~v~~i~~~~~~lIi~~~~v~~~al~~l~~~~I~~v~~v~~~ 320 (562)
.+++.|..+.|+++|++...-.+++.++..+.||+.++.++..
T Consensus 211 ~emv~Ka~~aGipvivS~saPT~lAVelA~~~giTLiGf~R~~ 253 (263)
T PRK00724 211 SEMVQKAAMAGIPILVAVSAPTSLAVELAEELGLTLVGFARGG 253 (263)
T ss_pred HHHHHHHHHcCCcEEEEcccchHHHHHHHHHhCCEEEEEecCC
Confidence 4678999999999999999999999999999999998876653
No 52
>cd00562 NifX_NifB This CD represents a family of iron-molybdenum cluster-binding proteins that includes NifB, NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=31.44 E-value=97 Score=25.32 Aligned_cols=38 Identities=18% Similarity=0.110 Sum_probs=31.3
Q ss_pred HHHHHHHcCCeEEEEcCcccHHHHHHHHhcCccccCCCC
Q 008527 280 KLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVA 318 (562)
Q Consensus 280 ~v~~i~~~~~~lIi~~~~v~~~al~~l~~~~I~~v~~v~ 318 (562)
..+.+...++++|++. ++++.+...|.++||.++....
T Consensus 53 ~~~~l~~~~v~~vi~~-~iG~~a~~~l~~~gI~v~~~~~ 90 (102)
T cd00562 53 AARLLALEGCDAVLVG-GIGGPAAAKLEAAGIKPIKAAE 90 (102)
T ss_pred HHHHHHHCCCcEEEEc-ccCccHHHHHHHcCCEEEEcCC
Confidence 3455667899999998 5999999999999999986554
No 53
>PF08421 Methyltransf_13: Putative zinc binding domain; InterPro: IPR013630 This domain is found at the N terminus of bacterial methyltransferases. ; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.
Probab=29.46 E-value=41 Score=25.51 Aligned_cols=28 Identities=25% Similarity=0.611 Sum_probs=13.1
Q ss_pred hHhhcCCCcCCCcceeEEeeeccccceeeeeccCCCc
Q 008527 523 DETVKNPKVVCKQIFLLKVFFMPNLVNILICQDCGLM 559 (562)
Q Consensus 523 D~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (562)
|..+.....+.+..||+.++ .|.+||++
T Consensus 22 ~~f~~~~~~~~e~~~pL~l~---------~C~~Cglv 49 (62)
T PF08421_consen 22 NSFLKPELDEPEPRYPLDLY---------VCEDCGLV 49 (62)
T ss_dssp T--B-TTS-S---EEEEEEE---------EETTT--E
T ss_pred ccccChhhCCCceEECCEEE---------ECCCCCch
Confidence 34444434567778888765 59999985
No 54
>cd01143 YvrC Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=27.12 E-value=1.3e+02 Score=27.80 Aligned_cols=51 Identities=14% Similarity=0.112 Sum_probs=33.8
Q ss_pred HHHHHHcCCeEEEEcCcccHHHHHHHHhcCcccc--CCCC-----hHHHHHHHHHhCC
Q 008527 281 LDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCA--GRVA-----EEDLLRVAAATGG 331 (562)
Q Consensus 281 v~~i~~~~~~lIi~~~~v~~~al~~l~~~~I~~v--~~v~-----~~~Le~Ia~~TGa 331 (562)
+|.|.+.+|+||+......+...+.|.+.||.++ .... .+.++.++.++|-
T Consensus 53 ~E~l~~l~PDlii~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~lg~~~g~ 110 (195)
T cd01143 53 VEKIVALKPDLVIVSSSSLAELLEKLKDAGIPVVVLPAASSLDEIYDQIELIGKITGA 110 (195)
T ss_pred HHHHhccCCCEEEEcCCcCHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHHHHHhCC
Confidence 6778888999999866555546677888998543 2221 2346667777764
No 55
>PF12846 AAA_10: AAA-like domain
Probab=25.55 E-value=1.4e+02 Score=29.52 Aligned_cols=57 Identities=19% Similarity=0.197 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHcCCeEEEEcCcccHHH-----HHHHHhcCccccCCCChHHHHHHHHHhCCe
Q 008527 276 IIYDKLDKCVQSGAKVVLSRLAIGDLA-----TQYFADRDIFCAGRVAEEDLLRVAAATGGT 332 (562)
Q Consensus 276 ~l~~~v~~i~~~~~~lIi~~~~v~~~a-----l~~l~~~~I~~v~~v~~~~Le~Ia~~TGa~ 332 (562)
.+.+++....+.++.+++....++++. ..++...+..++.+....+.+.+++..|.+
T Consensus 241 ~~~~~~~~~Rk~g~~~~l~tQ~~~~l~~~~~~~~i~~n~~~~i~~~~~~~~~~~l~~~~gl~ 302 (304)
T PF12846_consen 241 FLDELLREGRKYGVGLILATQSPSDLPKSPIEDAILANCNTKIIFRLEDSDDAELAELFGLT 302 (304)
T ss_pred hhhHHHHHHHhcCCEEEEeeCCHHHHhccchHHHHHHhCCcEEEecCChHHHHHHHHHcCcC
Confidence 467888888899999999999999888 789999999999999999888899988754
No 56
>COG1526 FdhD Uncharacterized protein required for formate dehydrogenase activity [Energy production and conversion]
Probab=25.20 E-value=80 Score=31.59 Aligned_cols=44 Identities=18% Similarity=0.126 Sum_probs=38.5
Q ss_pred HHHHHHHHHcCCeEEEEcCcccHHHHHHHHhcCccccCCCChHH
Q 008527 278 YDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEED 321 (562)
Q Consensus 278 ~~~v~~i~~~~~~lIi~~~~v~~~al~~l~~~~I~~v~~v~~~~ 321 (562)
.++++|.++.|++++++--.-..++.+...+.||+.++.++...
T Consensus 211 ~EmV~Kaa~~Gipil~S~SAPT~Lai~~Ae~~~iTLvgf~R~~~ 254 (266)
T COG1526 211 SEMVQKAAMAGIPILASVSAPTSLAIEAAERLGLTLVGFVRGGR 254 (266)
T ss_pred HHHHHHHHHhCCcEEEEcccchHHHHHHHHHcCCEEEEEecCCc
Confidence 36789999999999999999999999999999999987776543
No 57
>PF02634 FdhD-NarQ: FdhD/NarQ family; InterPro: IPR003786 Formate dehydrogenase is required for nitrate inducible formate dehydrogenase activity. In Wolinella succinogenes it is a membranous molybdo-enzyme which is involved in phosphorylative electron transport. The functional formate dehydrogenase may be made up of three or four different subunits []. In Escherichia coli, FdhD is required for the formation of active formate dehydrogenases.; GO: 0008863 formate dehydrogenase (NAD+) activity, 0009326 formate dehydrogenase complex; PDB: 2PW9_D.
Probab=23.68 E-value=57 Score=32.02 Aligned_cols=42 Identities=24% Similarity=0.249 Sum_probs=32.4
Q ss_pred HHHHHHHHHcCCeEEEEcCcccHHHHHHHHhcCccccCCCCh
Q 008527 278 YDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAE 319 (562)
Q Consensus 278 ~~~v~~i~~~~~~lIi~~~~v~~~al~~l~~~~I~~v~~v~~ 319 (562)
.+++.|..+.|+++|++...-.+.+.++..+.||+.++.++.
T Consensus 182 ~emv~Ka~~aGipvivS~sapT~~av~~A~~~gitLigf~R~ 223 (236)
T PF02634_consen 182 SEMVQKAARAGIPVIVSRSAPTSLAVELARKLGITLIGFARG 223 (236)
T ss_dssp HHHHHHHHHHT-SEEEESS-B-HHHHHHHHHHT-EEEEEEET
T ss_pred HHHHHHHHHcCCCEEEEcccccHHHHHHHHHhCCEEEEEecC
Confidence 367888999999999999999999999999999998876554
No 58
>cd01144 BtuF Cobalamin binding protein BtuF. These proteins have been shown to function as initial receptors in ABC transport of vitamin B12 (cobalamin) in eubacterial and some archaeal species. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=23.25 E-value=1.6e+02 Score=28.41 Aligned_cols=52 Identities=12% Similarity=0.109 Sum_probs=36.4
Q ss_pred HHHHHHcCCeEEEEcCcccH-HHHHHHHhcCccccCC--CC----hHHHHHHHHHhCCe
Q 008527 281 LDKCVQSGAKVVLSRLAIGD-LATQYFADRDIFCAGR--VA----EEDLLRVAAATGGT 332 (562)
Q Consensus 281 v~~i~~~~~~lIi~~~~v~~-~al~~l~~~~I~~v~~--v~----~~~Le~Ia~~TGa~ 332 (562)
+|+|.+.+|+||+.....++ ...+.|.+.|+.++-. -. .+.++.|+.++|-.
T Consensus 50 ~E~i~~l~PDlIi~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~lg~~~g~~ 108 (245)
T cd01144 50 LERVLALKPDLVIAWDDCNVCAVVDQLRAAGIPVLVSEPQTLDDILADIRRLGTLAGRP 108 (245)
T ss_pred HHHHHhCCCCEEEEecCCCHHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhCCh
Confidence 67888999999998755444 3477888888865421 12 34478888888864
No 59
>PRK09534 btuF corrinoid ABC transporter substrate-binding protein; Reviewed
Probab=21.83 E-value=1.5e+02 Score=31.02 Aligned_cols=52 Identities=15% Similarity=0.155 Sum_probs=36.3
Q ss_pred HHHHHHHcCCeEEEEcCcccHHHHHHHHhcCccccCCC---C----hHHHHHHHHHhCC
Q 008527 280 KLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRV---A----EEDLLRVAAATGG 331 (562)
Q Consensus 280 ~v~~i~~~~~~lIi~~~~v~~~al~~l~~~~I~~v~~v---~----~~~Le~Ia~~TGa 331 (562)
-+|++++++|+|||......+...+.|.+.||.++..- . .+.++.+++++|-
T Consensus 111 n~E~Il~l~PDLVi~~~~~~~~~~~~L~~~gi~V~~~~~~~~l~~i~~~i~~lG~i~G~ 169 (359)
T PRK09534 111 NVEAVVGLDPDLVLAPNAVAGDTVTRLREAGITVFHFPAATSIEDVAEKTATIGRLTGN 169 (359)
T ss_pred CHHHHhcCCCCEEEEcCCCchHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHHHHHHhCC
Confidence 36888899999999865545556778889999875321 2 1345677777775
No 60
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=20.27 E-value=3.1e+02 Score=22.28 Aligned_cols=49 Identities=6% Similarity=-0.014 Sum_probs=35.9
Q ss_pred HHHHHHHHHcCCeEEEEcCcccHHHH----HHHHhcCccccCCCChHHHHHHH
Q 008527 278 YDKLDKCVQSGAKVVLSRLAIGDLAT----QYFADRDIFCAGRVAEEDLLRVA 326 (562)
Q Consensus 278 ~~~v~~i~~~~~~lIi~~~~v~~~al----~~l~~~~I~~v~~v~~~~Le~Ia 326 (562)
++.++.+.+-.+.+++.++++++... .+|.++||.++.--++.+|.+.+
T Consensus 19 kqt~Kai~kg~~~~v~iA~Da~~~vv~~l~~lceek~Ip~v~V~s~~~LGkAc 71 (84)
T PRK13600 19 KETLKALKKDQVTSLIIAEDVEVYLMTRVLSQINQKNIPVSFFKSKHALGKHV 71 (84)
T ss_pred HHHHHHHhcCCceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEECCHHHHHHHh
Confidence 44566666667889999999987443 35678999988877777776644
Done!