Query 008527
Match_columns 562
No_of_seqs 156 out of 1498
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 05:38:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008527.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008527hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iyg_H T-complex protein 1 sub 100.0 9E-115 3E-119 940.2 60.8 514 13-529 1-514 (515)
2 3p9d_G T-complex protein 1 sub 100.0 4E-117 1E-121 964.9 42.4 529 3-535 4-533 (550)
3 1q3q_A Thermosome alpha subuni 100.0 6E-115 2E-119 948.2 56.1 523 1-533 1-529 (548)
4 3ko1_A Chaperonin; 9-fold symm 100.0 7E-115 2E-119 946.6 53.0 523 4-535 11-539 (553)
5 3ruv_A Chaperonin, CPN; double 100.0 3E-114 1E-118 941.7 57.3 517 7-534 4-524 (543)
6 1a6d_B Thermosome (beta subuni 100.0 3E-114 1E-118 942.3 54.4 519 6-534 4-528 (543)
7 3iyg_A T-complex protein 1 sub 100.0 2E-112 6E-117 926.2 59.7 506 16-530 3-529 (529)
8 3iyg_B T-complex protein 1 sub 100.0 2E-112 8E-117 922.0 59.7 509 15-531 2-513 (513)
9 1a6d_A Thermosome (alpha subun 100.0 3E-113 9E-118 934.8 52.0 513 8-532 7-525 (545)
10 3iyg_G T-complex protein 1 sub 100.0 3E-112 1E-116 921.0 59.2 505 16-529 2-514 (515)
11 3p9d_A T-complex protein 1 sub 100.0 5E-113 2E-117 934.3 48.6 523 1-533 1-552 (559)
12 3iyg_E T-complex protein 1 sub 100.0 1E-110 4E-115 910.3 58.5 506 16-528 3-514 (515)
13 3p9d_D T-complex protein 1 sub 100.0 8E-113 3E-117 927.6 41.9 511 10-529 6-528 (528)
14 3iyg_D T-complex protein 1 sub 100.0 8E-111 3E-115 911.0 56.7 503 16-529 4-518 (518)
15 3p9d_C T-complex protein 1 sub 100.0 3E-112 1E-116 927.9 45.0 517 5-531 1-588 (590)
16 3iyg_Z T-complex protein 1 sub 100.0 6E-111 2E-115 910.6 54.4 501 16-528 3-516 (517)
17 3p9d_E T-complex protein 1 sub 100.0 2E-111 5E-116 922.9 49.1 520 8-532 28-561 (562)
18 3p9d_B T-complex protein 1 sub 100.0 2E-111 6E-116 918.7 37.3 517 10-534 4-523 (527)
19 3iyg_Q T-complex protein 1 sub 100.0 2E-108 5E-113 892.6 58.2 502 14-528 1-511 (512)
20 3p9d_H T-complex protein 1 sub 100.0 9E-111 3E-115 917.9 38.3 520 7-535 9-554 (568)
21 3p9d_F T-complex protein 1 sub 100.0 1E-110 5E-115 914.2 37.2 520 10-535 4-543 (546)
22 3aq1_B Thermosome subunit; gro 100.0 2E-103 6E-108 849.8 42.3 475 51-535 1-482 (500)
23 1we3_A CPN60(groel); chaperoni 100.0 2E-96 7E-101 798.9 45.8 467 17-534 4-530 (543)
24 1kp8_A Groel protein; chaperon 100.0 5.3E-96 2E-100 794.3 44.6 464 17-533 4-527 (547)
25 1iok_A Chaperonin 60; chaperon 100.0 1.1E-96 4E-101 800.2 35.9 465 17-533 5-529 (545)
26 3rtk_A 60 kDa chaperonin 2; he 100.0 2.3E-95 8E-100 787.1 34.2 465 17-535 4-527 (546)
27 1gml_A T-complex protein 1 sub 100.0 6.5E-37 2.2E-41 285.8 18.0 173 208-383 1-174 (178)
28 1ass_A Thermosome; chaperonin, 100.0 3.4E-32 1.2E-36 248.9 13.4 154 214-370 1-154 (159)
29 3m6c_A 60 kDa chaperonin 1; ch 99.4 2.9E-13 9.9E-18 123.6 9.7 147 211-397 2-169 (194)
30 1srv_A Protein (groel (HSP60 c 99.4 7.1E-13 2.4E-17 115.5 10.1 114 216-353 1-134 (145)
31 3osx_A 60 kDa chaperonin; alph 99.4 1.8E-12 6.1E-17 118.6 11.7 143 215-397 13-176 (201)
32 1o13_A Probable NIFB protein; 44.9 33 0.0011 29.2 5.5 52 280-332 68-119 (136)
33 2yx6_A Hypothetical protein PH 40.8 40 0.0014 27.8 5.4 52 279-331 54-105 (121)
34 1eo1_A Hypothetical protein MT 39.3 54 0.0018 27.1 6.0 52 280-332 57-108 (124)
35 2wfb_A Putative uncharacterize 36.8 49 0.0017 27.2 5.3 50 280-330 59-109 (120)
36 1rdu_A Conserved hypothetical 27.0 51 0.0017 26.8 3.7 51 280-331 54-104 (116)
37 2re2_A Uncharacterized protein 27.0 81 0.0028 26.7 5.1 51 279-331 70-120 (136)
38 2pw9_A Putative formate dehydr 25.3 37 0.0013 32.6 2.8 41 278-318 205-245 (268)
39 3psh_A Protein HI_1472; substr 21.9 99 0.0034 29.9 5.3 52 281-332 77-154 (326)
40 2wi8_A Iron-uptake system-bind 20.9 1.3E+02 0.0044 29.0 5.9 52 281-332 89-144 (311)
No 1
>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=100.00 E-value=9.1e-115 Score=940.23 Aligned_cols=514 Identities=68% Similarity=1.067 Sum_probs=495.1
Q ss_pred cccccccccHHHHHHHHHHHHHHHHHhhhccCCCCCceeeeCCCCCeEEecCHHHHhccccccChHHHHHHHHHHhcccc
Q 008527 13 KEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSE 92 (562)
Q Consensus 13 ~~~~~~~~g~~~~~~n~~~~~~l~~iv~sslGP~G~~kmI~~~~g~~~iTnDG~tIl~~l~~~hP~akll~~~~~~~~~~ 92 (562)
+++.++.+|.+++.+|+.||+.|+++|+|||||+||+|||+++.|+++|||||+|||++|+++||+|||++++|++||++
T Consensus 1 ~~~~~~~~g~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~Akll~e~a~~qd~~ 80 (515)
T 3iyg_H 1 KEGTDSSQGIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGATILKLLDVVHPAAKTLVDIAKSQDAE 80 (515)
T ss_pred CCCccccCcHHHHHHHHHHHHHHHHHHhhCcCCCCCeEEEECCCCCeEEECCHHHHHHHccCCCHHHHHHHHHHHHhhce
Confidence 35678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCchhHHHHHHHHHHHHHHHhHHCCCChhhHHHHHHHHHHHHHHHHHhhceeccCCChHHHHHHHHHHHHHhhccCccC
Q 008527 93 VGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIG 172 (562)
Q Consensus 93 ~GDGTtt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~v~~~~~~~~~~~l~~ia~tsl~sk~~~ 172 (562)
+||||||++||+++||+++.+++++|+||+.|++||++|++.+++.|+++++|++..+....++.|.++|+|+++||+++
T Consensus 81 ~GDGTTtvvVLA~~Ll~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~a~~v~~~~~~~~~~~L~~va~tsl~sK~~s 160 (515)
T 3iyg_H 81 VGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKEIAVTVKKEDKVEQRKLLEKCAMTALSSKLIS 160 (515)
T ss_pred eCcchhhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhhcccccCChHHHHHHHHHHHHHHhcCCccc
Confidence 99999999999999999999999999999999999999999999999999999864432222678999999999999999
Q ss_pred chhHHHHHHHHHHHHHhCCCCCCcceeEEEecCCCcccceeEEEEEEecccCCCcccCCcceecCceEEEeecccccccc
Q 008527 173 GEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNIELELKSE 252 (562)
Q Consensus 173 ~~~~~ls~li~~Av~~v~~~~d~~~I~i~~i~gg~~~ds~li~Giv~~~~~~~~~~~~~~~~l~n~kIll~~~~Le~~~~ 252 (562)
.++++|++++++|+.+++.+.|.++|+|+++.||+.+||++++|++|+++|.||||.+||++++||||++++++||++++
T Consensus 161 ~~~~~i~~livdAv~~V~~~~d~~~I~V~k~~Gg~~~ds~lv~G~~~dk~~~~p~~~~~p~~~en~kIll~~~~Le~~k~ 240 (515)
T 3iyg_H 161 QQKAFFAKMVVDAVMMLDDLLQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYHNPMIALLNVELELKAE 240 (515)
T ss_pred ccHHHHHHHHHHHHHHhcccCCcceEEEEecCCCCccceEEEeeeEEecCccCcccccCCccccccEEEEEccccccccc
Confidence 99999999999999999743378899999999999999999999999999999999888999999999999999999999
Q ss_pred ccCceEEecCHHhHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcccHHHHHHHHhcCccccCCCChHHHHHHHHHhCCe
Q 008527 253 KENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAAATGGT 332 (562)
Q Consensus 253 ~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lIi~~~~v~~~al~~l~~~~I~~v~~v~~~~Le~Ia~~TGa~ 332 (562)
++++++.++++++++++.++|+++++++++++++.|++||+++++|++++++||+++||++++++++++|+|||++|||+
T Consensus 241 e~~~~v~is~~~~l~~~~~~E~~~l~~~le~I~~~g~~vvi~~~~I~dla~~~l~~~gI~~v~~~~k~~leria~~tGa~ 320 (515)
T 3iyg_H 241 KDNAEIRVHTVEDYQAIVDAEWNILYDKLEKIHHSGAKVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMMACGGS 320 (515)
T ss_pred ccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEECCcccHHHHHHHHHcCCcccccccHHHHHHHHHHhCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecccCCCCCCcccccceEEEEEECCeEEEEEEcCCCCceEEEEeecCCHHHHHHHHHHHHHHHHHHHHHHhCCceeccC
Q 008527 333 VQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGG 412 (562)
Q Consensus 333 ii~sl~~l~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~~~~TIll~G~t~~~l~e~k~~i~dal~~~~~~l~~~~vvpGG 412 (562)
+++++++++++++|+|+.|++.++|+++|++|+||+++..|||+|||+|+.+++|.||+++|||+++|++++++++||||
T Consensus 321 ii~~l~~~~~~~LG~a~~v~~~~ig~~~~~~i~g~~~~~~~tI~lrG~t~~~l~E~kr~i~DAl~~~r~~v~~~~iVpGG 400 (515)
T 3iyg_H 321 IQTSVNALSSDVLGRCQVFEETQIGGERYNFFTGCPKAKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGG 400 (515)
T ss_pred EeeccccCCHHHCCcccEEEEEEEcCeEEEEEecCCCCceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCCeecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998899999
Q ss_pred CccHHHHHHHHHHHhhhccchHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHhccCCCCCCCceeEecCCCCccc
Q 008527 413 GAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIAD 492 (562)
Q Consensus 413 G~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~~~~Gid~~~g~~~d 492 (562)
|++|++++++|++++.+.++++|+++++|++||+.||++|++|||+|+.+++.+|++.|.. ++ .++|||+.+|++.|
T Consensus 401 Ga~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~--~~-~~~G~d~~~g~~~d 477 (515)
T 3iyg_H 401 GAIEMELSKYLRDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHAQ--GG-MWYGVDINTEDIAD 477 (515)
T ss_pred cHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhc--cC-CCeeEeCCCCcccc
Confidence 9999999999999998899999999999999999999999999999999999999999876 55 78999999999999
Q ss_pred cccCCcccchHHHHHHHHHHHHHHHHHHchhHhhcCC
Q 008527 493 SFANFVWEPAVVKINAINAATEAACLILSVDETVKNP 529 (562)
Q Consensus 493 ~~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~iI~~~ 529 (562)
|++.|||||+.||+++|++|+|+|++|||||++|+.+
T Consensus 478 m~~~gI~dp~~vk~~al~~A~~~a~~iL~iD~ii~~~ 514 (515)
T 3iyg_H 478 NFEAFVWEPAMVRINALTAASEAACLIVSVDETIKNP 514 (515)
T ss_pred cHhccCEECHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999764
No 2
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* 4d8q_G* 4d8r_g*
Probab=100.00 E-value=3.8e-117 Score=964.87 Aligned_cols=529 Identities=58% Similarity=0.951 Sum_probs=496.1
Q ss_pred ccCchhHhhccccccccccHHHHHHHHHHHHHHHHHhhhccCCCCCceeeeCCCCCeEEecCHHHHhccccccChHHHHH
Q 008527 3 AMMQPQIILLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKIL 82 (562)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~g~~~~~~n~~~~~~l~~iv~sslGP~G~~kmI~~~~g~~~iTnDG~tIl~~l~~~hP~akll 82 (562)
+|||+|+.+|+++.++.+|.+++.+|+.||+.|+++|+|||||+||+|||+++.|+++|||||+|||++|+++||+|||+
T Consensus 4 ~~~~~~~~~l~~~~~~~~g~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~ITnDG~TIlk~i~v~hP~Akll 83 (550)
T 3p9d_G 4 GSQTPTIVVLKEGTDASQGKGQIISNINACVAVQEALKPTLGPLGSDILIVTSNQKTTISNDGATILKLLDVVHPAAKTL 83 (550)
T ss_dssp ------------CCCEEESHHHHHHHHHHHHHHHTTTGGGSTTTCCCEEEECSSSCEEEECCHHHHTTTSCCCSHHHHHH
T ss_pred ccCCcchhhhcCCcchhhhHHHHHHHHHHHHHHHHHHHhccCCCCCcEEEECCCCCeEEECCHHHHHHHccCCCHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcccccCCchhHHHHHHHHHHHHHHHhHHCCCChhhHHHHHHHHHHHHHHHHHhhceeccCCChHHHHHHHHHHH
Q 008527 83 VDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCA 162 (562)
Q Consensus 83 ~~~~~~~~~~~GDGTtt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~v~~~~~~~~~~~l~~ia 162 (562)
+++|++||+++||||||+||||++||+++.+++++|+||+.|++||++|++.+++.|+++++|++..++ .+++.|.++|
T Consensus 84 ~e~a~~qd~e~GDGTTtvvVLA~~Ll~~a~~lv~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~~~-~~~~~L~~vA 162 (550)
T 3p9d_G 84 VDISRAQDAEVGDGTTSVTILAGELMKEAKPFLEEGISSHLIMKGYRKAVSLAVEKINELAVDITSEKS-SGRELLERCA 162 (550)
T ss_dssp HHHHHHHHTTTSSCHHHHHHHHHHHHHTTSHHHHSSSCTTHHHHHHHHHHHHHHHHHHHSEECCCCC-------CHHHHH
T ss_pred HHHHHHhhhhhCCCceehHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCCcc-hhHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999875431 1267899999
Q ss_pred HHhhccCccCchhHHHHHHHHHHHHHhCCCC-CCcceeEEEecCCCcccceeEEEEEEecccCCCcccCCcceecCceEE
Q 008527 163 ATTLSSKLIGGEKEFFASMVVDAVGAIGDGD-RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKIL 241 (562)
Q Consensus 163 ~tsl~sk~~~~~~~~ls~li~~Av~~v~~~~-d~~~I~i~~i~gg~~~ds~li~Giv~~~~~~~~~~~~~~~~l~n~kIl 241 (562)
+|+++||+++.|+++|+++++||+.++++++ |.++|+|++++|++++||++++|++|+++|.||||.+||++++||||+
T Consensus 163 ~tsl~sK~~~~~~~~i~~livdAv~~V~~~~~dl~~I~Vikv~Gg~~~ds~lv~G~~~dk~~~s~yf~~~~~~~en~kIl 242 (550)
T 3p9d_G 163 RTAMSSKLIHNNADFFVKMCVDAVLSLDRNDLDDKLIGIKKIPGGAMEESLFINGVAFKKTFSYAGFEQQPKKFNNPKIL 242 (550)
T ss_dssp HHHHHHTTTGGGHHHHHHHHHHHHHHCCSSSCCGGGCCCCBCCSSCGGGCCCCSSEEECCCSSCTTCSCSCSCCSSCCEE
T ss_pred HHhccCccccccHhHHHHHHHHHHHHhCccccCchheeEEEecCCCccceeEEeeEEEeccccccccccCcccccCceEE
Confidence 9999999999999999999999999998655 889999999999999999999999999999999999999999999999
Q ss_pred EeeccccccccccCceEEecCHHhHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcccHHHHHHHHhcCccccCCCChHH
Q 008527 242 LLNIELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEED 321 (562)
Q Consensus 242 l~~~~Le~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lIi~~~~v~~~al~~l~~~~I~~v~~v~~~~ 321 (562)
+++++|++++++.++++.+++++++.++++.|+++++++++++++.|++||+++++|++++++||+++||++++++++++
T Consensus 243 l~~~~Le~~k~e~~~~v~is~~~~l~~il~~E~~~l~~~v~~I~~~g~~vVi~~~~I~dla~~~L~~~gI~~v~~v~k~~ 322 (550)
T 3p9d_G 243 SLNVELELKAEKDNAEVRVEHVEDYQAIVDAEWQLIFEKLRQVEETGANIVLSKLPIGDLATQFFADRNIFCAGRVSADD 322 (550)
T ss_dssp EECSCCSCCCCSSCEEEEECSSSHHHHHHHHHHHHHHHHHHHHHTTTCSEEEESSCCCHHHHHTTGGGTCEEEECCCTTH
T ss_pred EeccccccccccccceeeeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCccHHHHHHHHHcCCccccCcCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCeEecccCCCCCCcccccceEEEEEECCeEEEEEEcCCCCceEEEEeecCCHHHHHHHHHHHHHHHHHHHH
Q 008527 322 LLRVAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRR 401 (562)
Q Consensus 322 Le~Ia~~TGa~ii~sl~~l~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~~~~TIll~G~t~~~l~e~k~~i~dal~~~~~ 401 (562)
|+|||++|||++++++++++++.+|+|+.|++.++++++|++|+||++++.|||+|||+|+.+++|.||+++|||+++|+
T Consensus 323 lerIa~~tGa~iis~l~~l~~~~LG~a~~v~~~~ig~e~~~~~~g~~~~~~~tI~lrG~te~~l~E~kr~l~DAl~~~r~ 402 (550)
T 3p9d_G 323 MNRVIQAVGGSIQSTTSDIKPEHLGTCALFEEMQIGSERYNLFQGCPQAKTCTLLLRGGAEQVIAEVERSLHDAIMIVKR 402 (550)
T ss_dssp HHHHHHHTCCCCBSSGGGCCGGGCCCCSBCCCCCCSSSCCEEEBCCTTCCCCCCCBCSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCceecchhhCCHHHcCCceEEEEEEeCCeEEEEEecCCCCceeEEEEeCCcHHHHHHHHHHHHhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCceeccCCccHHHHHHHHHHHhhhccchHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHhccCCCCCCCce
Q 008527 402 ATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPY 481 (562)
Q Consensus 402 ~l~~~~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~~~~ 481 (562)
++++|++|||||++|++++.+|++++...++++|+++++|++||+.||++|++|||+|+.+++.+|++.|.. ++ .++
T Consensus 403 av~~g~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~vv~~l~~~h~~--~~-~~~ 479 (550)
T 3p9d_G 403 ALQNKLIVAGGGATEMEVSKCLRDYSKTIAGKQQMIINAFAKALEVIPRQLCENAGFDAIEILNKLRLAHSK--GE-KWY 479 (550)
T ss_dssp HHHSCCEEETTTHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHTHHHHHHHHTSCSCHHHHHHHHHHHHHH--SC-SCC
T ss_pred HHhcCCcccCCCHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc--CC-Cce
Confidence 999999999999999999999999998899999999999999999999999999999999999999999865 55 789
Q ss_pred eEecCCCCccccccCCcccchHHHHHHHHHHHHHHHHHHchhHhhcCCCcCCCc
Q 008527 482 GVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPKVVCKQ 535 (562)
Q Consensus 482 Gid~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~iI~~~~~~~~~ 535 (562)
|||+.+|++.||++.|||||+.||+++|++|+|+|++|||||++|...|++.+.
T Consensus 480 G~d~~~g~~~dm~~~gI~dp~~vk~~al~~A~~~a~~iL~id~ii~~~~~~~~~ 533 (550)
T 3p9d_G 480 GVVFETENIGDNFAKFVWEPALVKINALNSATEATNLILSVDETITNKGSESAN 533 (550)
T ss_dssp CBCSSSSSBCCHHHHTCEEEHHHHHHHHHHHHHHHHHHHTEEEEECCCCCC---
T ss_pred eeeCCCCcccchHhccCEecHHHHHHHHHHHHHHHHHHHhHHHHhhCCCccccc
Confidence 999999999999999999999999999999999999999999999987765544
No 3
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A
Probab=100.00 E-value=6.1e-115 Score=948.18 Aligned_cols=523 Identities=35% Similarity=0.573 Sum_probs=497.6
Q ss_pred CcccCchhHhhccccccccccHHHHHHHHHHHHHHHHHhhhccCCCCCceeeeCCCCCeEEecCHHHHhccccccChHHH
Q 008527 1 MAAMMQPQIILLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAK 80 (562)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~g~~~~~~n~~~~~~l~~iv~sslGP~G~~kmI~~~~g~~~iTnDG~tIl~~l~~~hP~ak 80 (562)
|+.+|++|+.+++++.++.+|.++|.+|+.||+.|+++|+|||||+||+|||+++.|+++|||||+|||++|+++||+||
T Consensus 1 m~~~~~~~~~~l~~~~~~~~g~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~Ak 80 (548)
T 1q3q_A 1 MAQLSGQPVVILPEGTQRYVGRDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVVTNDCATILDKIDLQHPAAK 80 (548)
T ss_dssp --------CCCSCTTCEEEEHHHHHHHHHHHHHHHHHHHHTTCSTTCCEEEEECTTCCEEEESCHHHHHHHSCCCSHHHH
T ss_pred CCCcCCCCcccccCCcceechHHHHHHHHHHHHHHHHHHHhccCCCCceEEEEcCCCCeEEECCHHHHHHHhhccchHHH
Confidence 67766677878999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccccCCchhHHHHHHHHHHHHHHHhHHCCCChhhHHHHHHHHHHHHHHHHHhhceeccCCChHHHHHHHHH
Q 008527 81 ILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSK 160 (562)
Q Consensus 81 ll~~~~~~~~~~~GDGTtt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~v~~~~~~~~~~~l~~ 160 (562)
|++++|++||+++||||||+|||+++||+++.+++++|+||+.|++||++|++.+++.|+++++|++..+ ++.|.+
T Consensus 81 ll~e~a~~qd~e~GDGTTtvvvLA~~LL~~a~~ll~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~d----~~~l~~ 156 (548)
T 1q3q_A 81 MMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSIITKGYALAAEKAQEILDEIAIRVDPDD----EETLLK 156 (548)
T ss_dssp HHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCEECCTTC----HHHHHH
T ss_pred HHHHHHHhcCCEECCChhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC----HHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999997654 789999
Q ss_pred HHHHhhccCccCchhHHHHHHHHHHHHHhCCC-----C-CCcceeEEEecCCCcccceeEEEEEEecccCCCcccCCcce
Q 008527 161 CAATTLSSKLIGGEKEFFASMVVDAVGAIGDG-----D-RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKK 234 (562)
Q Consensus 161 ia~tsl~sk~~~~~~~~ls~li~~Av~~v~~~-----~-d~~~I~i~~i~gg~~~ds~li~Giv~~~~~~~~~~~~~~~~ 234 (562)
+|+|+++||+.++|+++|++++++|+.+++++ + |.++|+|++++|++++||++++|++|+++|.|||| |++
T Consensus 157 va~tsl~sKi~~~~~~~i~~livdAv~~V~~~~~g~~~~d~~~I~V~k~~G~~~~ds~lv~G~v~dk~~~~~~m---~~~ 233 (548)
T 1q3q_A 157 IAATSITGKNAESHKELLAKLAVEAVKQVAEKKDGKYVVDLDNIKFEKKAGEGVEESELVRGVVIDKEVVHPRM---PKR 233 (548)
T ss_dssp HHHHHSCSSTTGGGHHHHHHHHHHHHHHHCEESSSSEECCGGGEEEEEEEBSCGGGCEEESSEEESCCCSSTTS---CSE
T ss_pred HHHHHhhccccccchHHHHHHHHHHHHHhccccCCCccccCCeEEEEEecCCCccceEEEeeEEEeccCCCCCC---cce
Confidence 99999999999999999999999999999753 1 56799999999999999999999999999999986 799
Q ss_pred ecCceEEEeeccccccccccCceEEecCHHhHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcccHHHHHHHHhcCcccc
Q 008527 235 FLNPKILLLNIELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCA 314 (562)
Q Consensus 235 l~n~kIll~~~~Le~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lIi~~~~v~~~al~~l~~~~I~~v 314 (562)
++||||++++++||+++++.++++.++++++++++.++|+++++++++++++.|++|||++++|++.+++||.++||+++
T Consensus 234 ien~kIll~~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g~~lvi~~~~I~~~al~~L~~~~I~av 313 (548)
T 1q3q_A 234 VENAKIALINEALEVKKTETDAKINITSPDQLMSFLEQEEKMLKDMVDHIAQTGANVVFVQKGIDDLAQHYLAKYGIMAV 313 (548)
T ss_dssp ESSEEEEEECSCBSCCCCSSCCCEEECSHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEESSCBCHHHHHHHHHTTCEEE
T ss_pred ecCCEEEEEecCcCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHhCcCEEEEcCCcCHHHHHHHHHCCcEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHhCCeEecccCCCCCCcccccceEEEEEECCeEEEEEEcCCCCceEEEEeecCCHHHHHHHHHHHHH
Q 008527 315 GRVAEEDLLRVAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHD 394 (562)
Q Consensus 315 ~~v~~~~Le~Ia~~TGa~ii~sl~~l~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~~~~TIll~G~t~~~l~e~k~~i~d 394 (562)
+++++++|+|||++|||++++++++++++++|+|+.|++.++|+++|++|+||++++.|||+|||+|+.+++|.||+++|
T Consensus 314 ~~~~k~~le~ia~~tGa~ii~~l~~~~~~~LG~a~~v~~~~ig~~~~~~~~g~~~~~~~TI~lrG~te~~l~E~er~l~D 393 (548)
T 1q3q_A 314 RRVKKSDMEKLAKATGAKIVTNVKDLTPEDLGYAEVVEERKLAGENMIFVEGCKNPKAVTILIRGGTEHVIDEVERALED 393 (548)
T ss_dssp CSCCHHHHHHHHHHHCCCCBSSGGGCCGGGCEEESEEEEEEETTEEEEEEECCSSCSSEEEEEEESSHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHhCCeEecccccCCHHHCCCceEEEEEEecCceEEEEecCCCCCeEEEEECCCChHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCceeccCCccHHHHHHHHHHHhhhccchHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHhccCC
Q 008527 395 AIMIVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALP 474 (562)
Q Consensus 395 al~~~~~~l~~~~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~ 474 (562)
|++++|+++++|++|||||++|++++.+|++++.+.++++|+++++|++||+.||++|++|||+|+.+++.+|+..|..
T Consensus 394 Al~~~r~a~~~~~ivpGGGa~e~~~~~~L~~~~~~~~g~~q~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~- 472 (548)
T 1q3q_A 394 AVKVVKDVMEDGAVLPAGGAPEIELAIRLDEYAKQVGGKEALAIENFADALKIIPKTLAENAGLDTVEMLVKVISEHKN- 472 (548)
T ss_dssp HHHHHHHHHHSCEEEECTTHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTTHHHHHHHHHTTCCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHCCCcccCCcHHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhc-
Confidence 9999999999999999999999999999999998889999999999999999999999999999999999999998864
Q ss_pred CCCCCceeEecCCCCccccccCCcccchHHHHHHHHHHHHHHHHHHchhHhhcCCCcCC
Q 008527 475 TGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPKVVC 533 (562)
Q Consensus 475 ~~~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~iI~~~~~~~ 533 (562)
++ .++|||+.+|++.||.+.|||||+.||+++|++|+|+|++|||||++|...|.+.
T Consensus 473 -~~-~~~G~d~~~g~~~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~iD~iI~~~~~~~ 529 (548)
T 1q3q_A 473 -RG-LGIGIDVFEGKPADMLEKGIIEPLRVKKQAIKSASEAAIMILRIDDVIAAKATKP 529 (548)
T ss_dssp -HC-TTEEEETTTTEEEETTTTTCEEEHHHHHHHHHHHHHHHHHHHTCCEEEECCC---
T ss_pred -CC-CCcceeCCCCCccchhhcCCEecHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCC
Confidence 44 6899999999999999999999999999999999999999999999999877553
No 4
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis}
Probab=100.00 E-value=7e-115 Score=946.57 Aligned_cols=523 Identities=39% Similarity=0.641 Sum_probs=484.7
Q ss_pred cCchhHhhccccccccccHHHHHHHHHHHHHHHHHhhhccCCCCCceeeeCCCCCeEEecCHHHHhccccccChHHHHHH
Q 008527 4 MMQPQIILLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILV 83 (562)
Q Consensus 4 ~~~~~~~~~~~~~~~~~g~~~~~~n~~~~~~l~~iv~sslGP~G~~kmI~~~~g~~~iTnDG~tIl~~l~~~hP~akll~ 83 (562)
|.++|+.+|+++.++.+|.++|.+|+.||+.|+++|+|||||+||+|||+++.|+++|||||+|||++|+++||+|||++
T Consensus 11 ~~~~~~~~l~~~~~~~~g~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~Akll~ 90 (553)
T 3ko1_A 11 PEGIPVIILKEGSSRTYGKEAVRANIAAVKAVEEALKSTYGPRGMDKMLVDSLGDITITNDGATILDKMDLQHPAAKLLV 90 (553)
T ss_dssp -----------------CHHHHHHHHHHHHHHHHHHGGGCSTTCCEEEEECTTSCEEEECCHHHHHHSSCCCSHHHHHHH
T ss_pred CCCCeEEEEecCcccchhHHHHHHHHHHHHHHHHHHHhccCCcchhhHHHhhccceEEecCccchhhhhhccChhHHHHH
Confidence 45668889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcccccCCchhHHHHHHHHHHHHHHHhHHCCCChhhHHHHHHHHHHHHHHHHHhhceeccCCChHHHHHHHHHHHH
Q 008527 84 DIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAA 163 (562)
Q Consensus 84 ~~~~~~~~~~GDGTtt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~v~~~~~~~~~~~l~~ia~ 163 (562)
++|++||+++||||||+|||+++||+++.+++++|+||+.|++||++|++.+++.|+++++|++..+ ++.|.++|+
T Consensus 91 e~a~~qd~e~GDGTTtvvVLA~eLL~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~d----~e~L~~vA~ 166 (553)
T 3ko1_A 91 QIAKGQDEETADGTKTAVIFSGELVKKAEDLLYKDVHPTIIISGYKKAEEVALQTIQELAQTVSIND----TDLLRKIAM 166 (553)
T ss_dssp HHHHTCSSSSSTTHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCEECCTTC----HHHHHHHHH
T ss_pred HHhhCCcccccCCceeEEEehHHHHHhHHHHHhcCCCceEEehhhhHHHHHHHHHHHHhcCCCCCCc----HHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999987644 789999999
Q ss_pred HhhccCccCchhHHHHHHHHHHHHHhCCC-----C-CCcceeEEEecCCCcccceeEEEEEEecccCCCcccCCcceecC
Q 008527 164 TTLSSKLIGGEKEFFASMVVDAVGAIGDG-----D-RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLN 237 (562)
Q Consensus 164 tsl~sk~~~~~~~~ls~li~~Av~~v~~~-----~-d~~~I~i~~i~gg~~~ds~li~Giv~~~~~~~~~~~~~~~~l~n 237 (562)
|+++||+++.|+++|++|+++|+.+++++ . |.++|+|+++.|++.+||++++|++|+++|.|||| |++++|
T Consensus 167 tsl~sK~~~~~~~~i~~livdAv~~V~~~~~G~~~~dl~~I~I~k~~Gg~~~ds~lv~G~v~dk~~~~~~m---~~~ien 243 (553)
T 3ko1_A 167 TSLSSKAVAGAREYIADIVVKAVTQVAELRGDKWYVDLDNIQIVKKAGGSINDTQLVYGIVVDKEVVHPGM---PKRLEN 243 (553)
T ss_dssp HHHTTSSCCTTHHHHHHHHHHHHHHHCCCTTSSCCCCGGGEEEEECCCSCGGGCEEESEEEECSCBSCTTS---CSCCBS
T ss_pred HHhhHHhhhhHHHHHHHHHHHHHHHHHHhcCCceEEechhHHHHHHhCCccccceeeEEEEecccccCCCC---cccccc
Confidence 99999999999999999999999999864 1 67789999999999999999999999999999985 799999
Q ss_pred ceEEEeeccccccccccCceEEecCHHhHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcccHHHHHHHHhcCccccCCC
Q 008527 238 PKILLLNIELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRV 317 (562)
Q Consensus 238 ~kIll~~~~Le~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lIi~~~~v~~~al~~l~~~~I~~v~~v 317 (562)
|||++++++|++++++.++++.++++++++++.++|+++++++++++++.|++|||++++|++.+++||.++||++++++
T Consensus 244 ~kIll~d~~Le~~k~e~~~~v~Iss~~~l~~~~~~E~~~l~~~vekI~~~g~~vvI~~~~I~~~al~~L~~~gI~~v~~v 323 (553)
T 3ko1_A 244 AKIALIDASLEVEKPELDAEIRINDPTQMQKFLDEEENLIKEKVDKILATGANVIICQKGIDEVAQSYLAKKGVLAVRRA 323 (553)
T ss_dssp CEEEEECSCBSCCCCTTTCCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEECSSCBCSHHHHHHHHHTCEEECCC
T ss_pred ceEEEecCcccccCcccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhhcceEEEeccChHHHHHHHHHhcchhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHhCCeEecccCCCCCCcccccceEEEEEECCeEEEEEEcCCCCceEEEEeecCCHHHHHHHHHHHHHHHH
Q 008527 318 AEEDLLRVAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIM 397 (562)
Q Consensus 318 ~~~~Le~Ia~~TGa~ii~sl~~l~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~~~~TIll~G~t~~~l~e~k~~i~dal~ 397 (562)
++++|+|||++|||++++++++++++++|+|+.|++.++|+++|++|+||++++.|||+|||+|+.+++|+||+++|||+
T Consensus 324 ~k~~leria~~tGa~ivs~l~~l~~~~LG~a~~v~~~~ig~d~~~~i~g~~~~~~~TI~lrG~te~~l~E~er~l~DAl~ 403 (553)
T 3ko1_A 324 KKSDLEKLARATGGRVVSNIDEISEQDLGYASLIEERKVGEDKMVFVEGAKNPKSISILIRGGLERLVDETERALRDALG 403 (553)
T ss_dssp CHHHHHHHHTTTTCCEESCGGGCCSSSSEECSEEECCCCSSSCCEEEESCSSSSCEEEEECCSSTTHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHhhCCeeecccccCChhhcchHHHHHHhhcCcceEEEeccCCCCceEEEeeeccHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCceeccCCccHHHHHHHHHHHhhhccchHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHhccCCCCC
Q 008527 398 IVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGE 477 (562)
Q Consensus 398 ~~~~~l~~~~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~ 477 (562)
++|+++++|++|||||++|++++.+|++++.+.++++|+++++|++||+.||++|++|||+|+.+++.+|++.|.. ++
T Consensus 404 ~~r~av~~g~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~--~~ 481 (553)
T 3ko1_A 404 TVADVIKDGRAIAGGGAVEIEIAKKLRKYAPQVGGKEQLAVEAYANALESLVSILIENAGFDPIDLLMKLRSTHEN--EN 481 (553)
T ss_dssp HHHHHHHHCEEEETTTHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHTTCS--GG
T ss_pred HHHHHhhcCceecCCceeEeHHHHHHHHhccccCChhHhHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHhhC--cC
Confidence 9999999999999999999999999999998899999999999999999999999999999999999999999865 32
Q ss_pred CCceeEecCCCCccccccCCcccchHHHHHHHHHHHHHHHHHHchhHhhcCCCcCCCc
Q 008527 478 GAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPKVVCKQ 535 (562)
Q Consensus 478 ~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~iI~~~~~~~~~ 535 (562)
+.++|||+.+|++.||++.|||||+.||+++|++|+|+|++|||||++|...|.+++.
T Consensus 482 ~~~~G~d~~~g~~~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~iD~ii~~~~~~~~~ 539 (553)
T 3ko1_A 482 NKWYGIDLYAGQPVDMWQKGVIEPALVKMNAIKAATEAATLVLRIDDVVSAGKKSGGE 539 (553)
T ss_dssp GTTEEEETTTTEEEESGGGSCEEETTHHHHHHHHHHHHHHHHHHEEEECCC-------
T ss_pred CceEeEEeecCCchHHHHhCccchhhhhhhhhhhcchhheEEEehHHHHHhhhhccCC
Confidence 2579999999999999999999999999999999999999999999999988776554
No 5
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A
Probab=100.00 E-value=3.1e-114 Score=941.65 Aligned_cols=517 Identities=36% Similarity=0.584 Sum_probs=497.8
Q ss_pred hhHhhccccccccccHHHHHHHHHHHHHHHHHhhhccCCCCCceeeeCCCCCeEEecCHHHHhccccccChHHHHHHHHH
Q 008527 7 PQIILLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIA 86 (562)
Q Consensus 7 ~~~~~~~~~~~~~~g~~~~~~n~~~~~~l~~iv~sslGP~G~~kmI~~~~g~~~iTnDG~tIl~~l~~~hP~akll~~~~ 86 (562)
+| .+|+++.++.+|.++|.+|+.||+.|+++|+|||||+||+|||+++.|+++|||||+|||++|+++||+|||++++|
T Consensus 4 ~p-~~l~~~~~~~~g~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~Akll~e~a 82 (543)
T 3ruv_A 4 QP-GVLPENMKRYMGRDAQRMNILAGRIIAETVRSTLGPKGMDKMLVDDLGDVVVTNDGVTILREMSVEHPAAKMLIEVA 82 (543)
T ss_dssp CC-CSSCSSEEEEETHHHHHHHHHHHHHHHHHHHTTCSTTCCEEEEECTTSCEEEECCHHHHHHHSCCCCHHHHHHHHHH
T ss_pred CC-eeecCCcchhccHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEECCCCCEEEECCHHHHHHHccCcCHHHHHHHHHH
Confidence 34 78899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcccccCCchhHHHHHHHHHHHHHHHhHHCCCChhhHHHHHHHHHHHHHHHHHhhceeccCCChHHHHHHHHHHHHHhh
Q 008527 87 KSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTL 166 (562)
Q Consensus 87 ~~~~~~~GDGTtt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~v~~~~~~~~~~~l~~ia~tsl 166 (562)
++||+++||||||+||||++||+++.+++++|+||+.|++||++|++.+++.|+++++|++..+ ++.|.++|+|++
T Consensus 83 ~~qd~e~GDGTTtvvVLA~~Ll~~a~~ll~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~d----~~~L~~va~tsl 158 (543)
T 3ruv_A 83 KTQEKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQAAAQKAQELLKTIACEVGAQD----KEILTKIAMTSI 158 (543)
T ss_dssp HHHHHHTSSCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHCEECCTTC----HHHHHHHHHHHH
T ss_pred HHHHhhhCCCcccHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhhCCCCCCC----HHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999997644 789999999999
Q ss_pred ccCccCchhHHHHHHHHHHHHHhCCC-C--CCcceeEEEecCCCcccceeEEEEEEecccCCCcccCCcceecCceEEEe
Q 008527 167 SSKLIGGEKEFFASMVVDAVGAIGDG-D--RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLL 243 (562)
Q Consensus 167 ~sk~~~~~~~~ls~li~~Av~~v~~~-~--d~~~I~i~~i~gg~~~ds~li~Giv~~~~~~~~~~~~~~~~l~n~kIll~ 243 (562)
+||+.+.|+++|++++++|+.+++++ . |.++|+|+++.|++.+||++++|++|+++|.|||| |++++||||+++
T Consensus 159 ~sK~~~~~~~~i~~livdAv~~V~~~~g~~dl~~I~V~k~~Gg~~~ds~lv~G~v~dk~~~~~~m---~~~~~n~kIll~ 235 (543)
T 3ruv_A 159 TGKGAEKAKEKLAEIIVEAVSAVVDDEGKVDKDLIKIEKKSGASIDDTELIKGVLVDKERVSAQM---PKKVTDAKIALL 235 (543)
T ss_dssp HHTCGGGCCHHHHHHHHHHHHHHCCTTSCCCGGGEEEEEEECSCGGGCEEESSEEESCCCSCTTS---CSEEEEEEEEEE
T ss_pred cccccchhHHHHHHHHHHHHHHhhccCCCcccceEEEEEcCCCCcccceeecceEEeccccCccc---cccccCcEEEEE
Confidence 99999999999999999999999875 2 67889999999999999999999999999999985 799999999999
Q ss_pred eccccccccccCceEEecCHHhHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcccHHHHHHHHhcCccccCCCChHHHH
Q 008527 244 NIELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLL 323 (562)
Q Consensus 244 ~~~Le~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lIi~~~~v~~~al~~l~~~~I~~v~~v~~~~Le 323 (562)
+++|++++++.++++.+++++++.++.++|+++++++++++++.|++|||++++|++.+++||.++||++++++++++|+
T Consensus 236 ~~~Le~~k~e~~~~v~Iss~~~l~~~~~~E~~~l~~~ve~I~~~g~~vvi~~~~I~~~al~~L~~~gI~~v~~v~k~~le 315 (543)
T 3ruv_A 236 NCAIEIKETETDAEIRITDPAKLMEFIEQEEKMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGIVAARRVKKSDME 315 (543)
T ss_dssp SSCBSCCCCSSCCCEEECSTTHHHHHHHHHHHHHHHHHHHHHHHTCSEEEESSCBCHHHHHHHHHTTCEEECSCCHHHHH
T ss_pred cccccccccccCceeEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeCCccHHHHHHHHHcCcEEEeeCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCeEecccCCCCCCcccccceEEEEEECCeEEEEEEcCCCCceEEEEeecCCHHHHHHHHHHHHHHHHHHHHHH
Q 008527 324 RVAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRAT 403 (562)
Q Consensus 324 ~Ia~~TGa~ii~sl~~l~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~~~~TIll~G~t~~~l~e~k~~i~dal~~~~~~l 403 (562)
|||++|||++++++++++++++|+|+.|++.++|+++|++|+||+++..|||+|||+|+.+++|.||+++|||+++|+++
T Consensus 316 ~ia~~tGa~iis~l~~l~~~~LG~a~~v~~~~ig~~~~~~i~g~~~~~~~TI~lrG~te~~l~E~kr~l~DAl~~~r~av 395 (543)
T 3ruv_A 316 KLAKATGANVIAAIAALSAQDLGDAGLVEERKISGDSMIFVEECKHPKAVTMLIRGTTEHVIEEVARAVDDAVGVVGCTI 395 (543)
T ss_dssp HHHHHHCCCEESCGGGCCGGGCEEEEEEEEEEETTEEEEEEECCSSCSSEEEEEEESSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCceecccccCCHHHCCcccEEEEEEeCCceEEEEECCCCCceeEEEecCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCceeccCCccHHHHHHHHHHHhhhccchHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHhcc-CCCCCCCcee
Q 008527 404 KNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHA-LPTGEGAPYG 482 (562)
Q Consensus 404 ~~~~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~~~~~l~~~~~-~~~~~~~~~G 482 (562)
++|++|||||++|++++.+|++++.+.++++|+++++|++||+.||++|++|||+|+.+++.+|++.|. . |+ .++|
T Consensus 396 ~~g~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~--~~-~~~G 472 (543)
T 3ruv_A 396 EDGRIVSGGGSTEVELSMKLREYAEGISGREQLAVRAFADALEVIPRTLAENAGLDAIEILVKVRAAHASN--GN-KCAG 472 (543)
T ss_dssp HHCEEEETTTHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHTHHHHHHHHHTTCCHHHHHHHHHHHHTTT--CC-TTEE
T ss_pred hcCCeecCCcHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhc--CC-ceee
Confidence 999999999999999999999999889999999999999999999999999999999999999999986 4 55 7899
Q ss_pred EecCCCCccccccCCcccchHHHHHHHHHHHHHHHHHHchhHhhcCCCcCCC
Q 008527 483 VDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPKVVCK 534 (562)
Q Consensus 483 id~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~iI~~~~~~~~ 534 (562)
||+.+|++.||++.|||||+.||+++|++|+|+|++|||||++|...|.+++
T Consensus 473 ~d~~~g~~~dm~~~gI~dp~~vk~~al~~A~~~a~~iL~id~ii~~~~~~~~ 524 (543)
T 3ruv_A 473 LNVFTGAVEDMCENGVVEPLRVKTQAIQSAAESTEMLLRIDDVIAAEKLRGA 524 (543)
T ss_dssp ECTTTCSEEETTTTTCEEEHHHHHHHHHHHHHHHHHHHTCCEEEEEC-----
T ss_pred eeCCCCccccHHHcCCEecHHHHHHHHHHHHHHHHHHHhHHhheecCccCCC
Confidence 9999999999999999999999999999999999999999999998876554
No 6
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B
Probab=100.00 E-value=3.4e-114 Score=942.33 Aligned_cols=519 Identities=37% Similarity=0.605 Sum_probs=483.4
Q ss_pred chhHhhccccccccccHHHHHHHHHHHHHHHHHhhhccCCCCCceeeeCCCCCeEEecCHHHHhccccccChHHHHHHHH
Q 008527 6 QPQIILLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDI 85 (562)
Q Consensus 6 ~~~~~~~~~~~~~~~g~~~~~~n~~~~~~l~~iv~sslGP~G~~kmI~~~~g~~~iTnDG~tIl~~l~~~hP~akll~~~ 85 (562)
++|+.+|+++.++.+|.++|.+|+.||..|+++|+|||||+||+|||+++.|+++|||||+|||++|+++||+|||++++
T Consensus 4 ~~~~~~l~~~~~~~~g~~a~~~ni~a~~~la~~vkttLGP~G~~kml~~~~g~~~iTnDG~tIlk~i~v~hP~Akll~e~ 83 (543)
T 1a6d_B 4 GQPIFILKEGTKRESGKDAMKENIEAAIAISNSVRSSLGPRGMDKMLVDSLGDIVITNDGVTILKEMDVEHPAAKMMVEV 83 (543)
T ss_dssp ----------------CHHHHHHHHHHHHHHHHHHTTSSTTCCCEEEECTTCCEEEECCHHHHHHHSCCCSHHHHHHHHH
T ss_pred CcchhhcCCcchhhhhHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCeEEeCCHHHHHHHhhccchHHHHHHHH
Confidence 44677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcccccCCchhHHHHHHHHHHHHHHHhHHCCCChhhHHHHHHHHHHHHHHHHHhhceeccCCChHHHHHHHHHHHHHh
Q 008527 86 AKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATT 165 (562)
Q Consensus 86 ~~~~~~~~GDGTtt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~v~~~~~~~~~~~l~~ia~ts 165 (562)
|++||+++||||||++|||++||+++.+++++|+||+.|++||++|++.+++.|+++++|++..+ ++.|.++|+|+
T Consensus 84 a~~qd~e~GDGTTtvvvLA~~LL~~a~~ll~~GihP~~I~~G~~~A~~~a~~~L~~~a~~v~~~~----~~~l~~va~ts 159 (543)
T 1a6d_B 84 SKTQDSFVGDGTTTAVIIAGGLLQQAQGLINQNVHPTVISEGYRMASEEAKRVIDEISTKIGADE----KALLLKMAQTS 159 (543)
T ss_dssp HTCTTCCCTTHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCEECCTTH----HHHHHHHHHHH
T ss_pred HHhcCCEECCChhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC----HHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999987543 78999999999
Q ss_pred hccCccCchhHHHHHHHHHHHHHhCCC-----C-CCcceeEEEecCCCcccceeEEEEEEecccCCCcccCCcceecCce
Q 008527 166 LSSKLIGGEKEFFASMVVDAVGAIGDG-----D-RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPK 239 (562)
Q Consensus 166 l~sk~~~~~~~~ls~li~~Av~~v~~~-----~-d~~~I~i~~i~gg~~~ds~li~Giv~~~~~~~~~~~~~~~~l~n~k 239 (562)
|+||+.++|+++|++++++|+.+++++ + |.++|+|++++|++++||++++|++|+++|.|||| |++++|||
T Consensus 160 l~sKi~~~~~~~i~~livdAv~~v~~~~~g~~~~d~~~I~V~k~~G~~~~ds~lv~G~v~dk~~~~~~m---~~~ien~k 236 (543)
T 1a6d_B 160 LNSKSASVAKDKLAEISYEAVKSVAELRDGKYYVDFDNIQVVKKQGGAIDDTQLINGIIVDKEKVHPGM---PDVVKDAK 236 (543)
T ss_dssp HTTSGGGGGHHHHHHHHHHHHHHHEEECSSSEEECGGGEEEEEEESSCGGGCEEESEEEESCCCSSTTS---CSEEEEEE
T ss_pred hccccccccHHHHHHHHHHHHHHhcccccCCcccccceEEEEEecCCCccceeEEccEEEecCCCCCCC---cceecCCe
Confidence 999999999999999999999999753 2 67789999999999999999999999999999986 79999999
Q ss_pred EEEeeccccccccccCceEEecCHHhHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcccHHHHHHHHhcCccccCCCCh
Q 008527 240 ILLLNIELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAE 319 (562)
Q Consensus 240 Ill~~~~Le~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lIi~~~~v~~~al~~l~~~~I~~v~~v~~ 319 (562)
|++++++|++++++.++++.++++++++++.++|+++++++++++++.|++|||++++|++.+++||.++||++++++++
T Consensus 237 Ill~~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g~~lvi~~~~I~~~al~~L~~~~I~av~~v~k 316 (543)
T 1a6d_B 237 IALLDAPLEIKKPEFDTNLRIEDPSMIQKFLAQEENMLREMVDKIKSVGANVVITQKGIDDMAQHYLSRAGIYAVRRVKK 316 (543)
T ss_dssp EEEESSCBSCCCCSSEEEECCCSTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEESSCBCHHHHHHHHHTTCEEECSCCH
T ss_pred EEEEecccccccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEECCCcCHHHHHHHHHCCeeEeccCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCeEecccCCCCCCcccccceEEEEEECCeEEEEEEcCCCCceEEEEeecCCHHHHHHHHHHHHHHHHHH
Q 008527 320 EDLLRVAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIV 399 (562)
Q Consensus 320 ~~Le~Ia~~TGa~ii~sl~~l~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~~~~TIll~G~t~~~l~e~k~~i~dal~~~ 399 (562)
++|+|||++|||++++++++++++++|+|+.|++.++|+++|++|+||++++.|||+|||+|+.+++|+||+++||++++
T Consensus 317 ~~le~ia~~tGa~iis~l~~l~~~~LG~a~~v~~~~ig~~~~~~~~g~~~~~~~TI~lrG~t~~~l~E~er~l~DAl~~~ 396 (543)
T 1a6d_B 317 SDMDKLAKATGASIVSTIDEISSSDLGTAERVEQVKVGEDYMTFVTGCKNPKAVSILVRGETEHVVDEMERSITDSLHVV 396 (543)
T ss_dssp HHHHHHHHHHTCCEESCGGGCCGGGCEEEEEEEEEEETTEEEEEEEEESSSSCEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCceecccccCCHHHCCCceEEEEEEecCceEEEEecCCCCceEEEEecCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCceeccCCccHHHHHHHHHHHhhhccchHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHhccCCCCCCC
Q 008527 400 RRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGA 479 (562)
Q Consensus 400 ~~~l~~~~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~~ 479 (562)
|+++++|++|||||++|++++.+|++++...++++|+++++|++||+.||++|++|||+|+.+++.+|+..|.. ++ .
T Consensus 397 r~a~~~~~ivpGGGa~e~~~s~~L~~~~~~~~g~~q~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~--~~-~ 473 (543)
T 1a6d_B 397 ASALEDGAYAAGGGATAAEIAFRLRSYAQKIGGRQQLAIEKFADAIEEIPRALAENAGLDPIDILLKLRAEHAK--GN-K 473 (543)
T ss_dssp HHHHHHCEEEETTTHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHTHHHHHHHHHHTCCHHHHHHHHHHHHHT--TC-T
T ss_pred HHHHHCCCccCCccHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhC--CC-C
Confidence 99999999999999999999999999998889999999999999999999999999999999999999999875 55 7
Q ss_pred ceeEecCCCCccccccCCcccchHHHHHHHHHHHHHHHHHHchhHhhcCCCcCCC
Q 008527 480 PYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPKVVCK 534 (562)
Q Consensus 480 ~~Gid~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~iI~~~~~~~~ 534 (562)
++|||+.+|++.||.+.|||||+.||+++|++|+|+|++|||||++|...|.+.+
T Consensus 474 ~~G~d~~~g~~~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~id~iI~~~~~~~~ 528 (543)
T 1a6d_B 474 TYGINVFTGEIEDMVKNGVIEPIRVGKQAIESATEAAIMILRIDDVIATKSSSSS 528 (543)
T ss_dssp TEEEETTTTEEEETTTTTCEEEHHHHHHHHHHHHHHHHHHHHEEEEEC-------
T ss_pred CeeEeCCCCcccchhhcCceecHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCC
Confidence 8999999999999999999999999999999999999999999999998775443
No 7
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=100.00 E-value=1.7e-112 Score=926.16 Aligned_cols=506 Identities=36% Similarity=0.587 Sum_probs=484.5
Q ss_pred ccccccHHHHHHHHHHHHHHHHHhhhccCCCCCceeeeCCCCCeEEecCHHHHhccccccChHHHHHHHHHHhcccccCC
Q 008527 16 TDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGD 95 (562)
Q Consensus 16 ~~~~~g~~~~~~n~~~~~~l~~iv~sslGP~G~~kmI~~~~g~~~iTnDG~tIl~~l~~~hP~akll~~~~~~~~~~~GD 95 (562)
.++.+|.++|.+|+.||+.|+++|+|||||+||+|||+++.|+++|||||+|||++|+++||+|||++++|++||+++||
T Consensus 3 ~~~~~g~~a~~~ni~a~~~la~~v~ttlGP~G~~kml~~~~g~~~iTnDG~tIlk~i~v~hP~akll~~~a~~qd~e~GD 82 (529)
T 3iyg_A 3 GDRSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELADLQDKEVGD 82 (529)
T ss_pred cchhchHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCeEEeCCHHHHHHHcccCChHHHHHHHHHHHhhhhhCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHhHHCCCChhhHHHHHHHHHHHHHHHHHh-hceeccCCChHHHHHHHHHHHHHhhccCccCch
Q 008527 96 GTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKE-LAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGE 174 (562)
Q Consensus 96 GTtt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~l~~L~~-~s~~v~~~~~~~~~~~l~~ia~tsl~sk~~~~~ 174 (562)
||||+||||++||+++.+++++|+||+.|++||++|++.+++.|++ +++|++..+ ++.|.++|+|+++||++++|
T Consensus 83 GTTtvvvLA~eLL~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~~s~~v~~~~----~e~l~~va~tsl~sK~~~~~ 158 (529)
T 3iyg_A 83 GTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYISENLIINTDELG----RDCLINAAKTSMSSKVIGIN 158 (529)
T ss_pred ChhhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCCCC----HHHHHHHHHHHhccCccccc
Confidence 9999999999999999999999999999999999999999999998 999987544 68999999999999999999
Q ss_pred hHHHHHHHHHHHHHhCC---C---C-CCcceeEEEecCCCcccceeEEEEEEecccCCCcccCCcceecCceEEEeeccc
Q 008527 175 KEFFASMVVDAVGAIGD---G---D-RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNIEL 247 (562)
Q Consensus 175 ~~~ls~li~~Av~~v~~---~---~-d~~~I~i~~i~gg~~~ds~li~Giv~~~~~~~~~~~~~~~~l~n~kIll~~~~L 247 (562)
+++|++++++|+.++++ + + |.++|+|+++.|++++||++++|++|++++.||+| |++++||||++++++|
T Consensus 159 ~~~i~~livdAv~~V~~~~~~g~~~~dv~~I~I~k~~G~~~~ds~lv~G~v~dk~~~~~~m---~~~ien~kIlll~~~l 235 (529)
T 3iyg_A 159 GDFFANLVVDAVLAIKYTDIRGQPRYPVNSINVLKAHGRSQMESMLINGYALNCVVGSQGM---PKRIVNAKIACLDFSL 235 (529)
T ss_pred HHHHHHHHHHHHHHHhhhccCCCcccccceEEEEEecCCCccceEEEeeeEEecCcccccC---CcccCCceEEEecCCc
Confidence 99999999999999973 1 1 46779999999999999999999999999999885 7999999999999999
Q ss_pred cccccccCceEEecCHHhHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcccHHHHHHHHhcCccccCCCChHHHHHHHH
Q 008527 248 ELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAA 327 (562)
Q Consensus 248 e~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lIi~~~~v~~~al~~l~~~~I~~v~~v~~~~Le~Ia~ 327 (562)
++++++.++++.++++++++.+.++|++++++++++|++.|++|||++++|++.+++||.++||++++++++++|+|||+
T Consensus 236 e~~k~e~~~~v~i~~~~~~~~i~~~E~~~l~~~v~kI~~~g~nvvi~~~~I~d~al~~L~~~gI~av~~v~k~~leria~ 315 (529)
T 3iyg_A 236 QKTKMKLGVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYFVEAGAMAVRRVLKRDLKRIAK 315 (529)
T ss_pred ccccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCceeccCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCeEecccCCCC------CCcccccceEEEEEECCeEEEEEEcCCCCceEEEEeecCCHHHHHHHHHHHHHHHHHHHH
Q 008527 328 ATGGTVQTSVNNVV------DEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRR 401 (562)
Q Consensus 328 ~TGa~ii~sl~~l~------~~~lG~~~~v~~~~ig~~~~~~~~g~~~~~~~TIll~G~t~~~l~e~k~~i~dal~~~~~ 401 (562)
+|||++++++++++ ++++|+|+.|++.++|+++|++|+||++++.|||+|||+|+.+++|.||+++||++++|+
T Consensus 316 ~tGa~iv~~~~~l~~~e~~~~~~LG~a~~v~~~~ig~~~~~~~~g~~~~~~~TI~lrG~t~~~l~E~er~l~Dal~v~r~ 395 (529)
T 3iyg_A 316 ASGATVLSTLANLEGEETFEASMLGQAEEVVQERICDDELILIKNTKARTSASVILRGANDFMCDEMERSLHDALCVVKR 395 (529)
T ss_pred HhCCeeecchhcccchhccChhhCccceEEEEEEeCCceEEEEEcCCCCceEEEEECCchHHHHHHHHHHHHHHHHHHHH
Confidence 99999999987764 568999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCceeccCCccHHHHHHHHHHHhhhccchHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHhccCCCCC----
Q 008527 402 ATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGE---- 477 (562)
Q Consensus 402 ~l~~~~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~---- 477 (562)
++++|++|||||++|++++.+|++++.+.++++|+++++||+||+.||++|++|||+|+.+++.+|++.|.. ++
T Consensus 396 ~v~~~~iVpGGGa~E~~ls~~L~~~~~~~~g~eq~~i~~fa~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~--~~~~~~ 473 (529)
T 3iyg_A 396 VLESKSVVPGGGAVEAALSIYLENYATSMGSREQLAIAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNE--AQVNPE 473 (529)
T ss_pred HhhCCeEEeCCcHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc--cccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999865 32
Q ss_pred ---CCceeEecCCCCccccccCCcccchHHHHHHHHHHHHHHHHHHchhHhhcCCC
Q 008527 478 ---GAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPK 530 (562)
Q Consensus 478 ---~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~iI~~~~ 530 (562)
+.++|+|+.+|++.||++.|||||+.||+++|++|+|+|++|||||++|+..|
T Consensus 474 ~~~~~~~G~d~~~g~~~d~~~~gV~dp~~vk~~al~~A~e~a~~iL~iD~ii~~~~ 529 (529)
T 3iyg_A 474 RKNLKWIGLDLVNGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLIKLHP 529 (529)
T ss_pred cccCceeeeeCCCCCccChhhccCEecHHHHHHHHHHHHHHHHHHHhHHhhhcCCC
Confidence 15799999999999999999999999999999999999999999999998743
No 8
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A
Probab=100.00 E-value=2.2e-112 Score=922.04 Aligned_cols=509 Identities=34% Similarity=0.536 Sum_probs=490.0
Q ss_pred cccccccHHHHHHHHHHHHHHHHHhhhccCCCCCceeeeCCC--CCeEEecCHHHHhccccccChHHHHHHHHHHhcccc
Q 008527 15 GTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDK--GTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSE 92 (562)
Q Consensus 15 ~~~~~~g~~~~~~n~~~~~~l~~iv~sslGP~G~~kmI~~~~--g~~~iTnDG~tIl~~l~~~hP~akll~~~~~~~~~~ 92 (562)
++++.+|.++|.+|+.||+.|+++|+|||||+||+|||+++. |+++|||||+|||++|+++||+|||++++|++||++
T Consensus 2 ~~~~~~g~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~~~G~~~iTnDG~tIlk~i~v~hp~Akll~e~a~~qd~e 81 (513)
T 3iyg_B 2 GADEERAETARLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDGATILKNIGVDNPAAKVLVDMSRVQDDE 81 (513)
T ss_pred CcchhhhHHHHHHHHHHHHHHHHHHHhccCCCCCeEEeecCCCCCCeEEECCHHHHHHHccccCHHHHHHHHHHHHhhhh
Confidence 457789999999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred cCCchhHHHHHHHHHHHHHHHhHHCCCChhhHHHHHHHHHHHHHHHHHhhceeccCCChHHHHHHHHHHHHHhhccCccC
Q 008527 93 VGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIG 172 (562)
Q Consensus 93 ~GDGTtt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~v~~~~~~~~~~~l~~ia~tsl~sk~~~ 172 (562)
+||||||++||+++||+++.+++++|+||+.|++||++|++.+++.|+++++|++.+ ...+++.|.++|+|+++||+.+
T Consensus 82 ~GDGTTtvvVLA~~LL~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~-~~~~~~~l~~va~tslssK~~~ 160 (513)
T 3iyg_B 82 VGDGTTSVTVLAAELLREAESLIAKKIHPQTIIAGWREATKAARQALLNSAVDHGSD-EVKFRQDLMNIAGTTLSSKLLT 160 (513)
T ss_pred hCCChhhhHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhCcCcccc-cccCHHHHHHHHHhhhcccccc
Confidence 999999999999999999999999999999999999999999999999999998732 1123789999999999999999
Q ss_pred chhHHHHHHHHHHHHHhCCCCCCcceeEEEecCCCcccceeEEEEEEecccCCCcccCCcceecCceEEEeecccccccc
Q 008527 173 GEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNIELELKSE 252 (562)
Q Consensus 173 ~~~~~ls~li~~Av~~v~~~~d~~~I~i~~i~gg~~~ds~li~Giv~~~~~~~~~~~~~~~~l~n~kIll~~~~Le~~~~ 252 (562)
+|+++|++++++|+.+++++.|.++|+|+++.||+.+||++++|++|+++|.|+ ||++++||||++++++|+++++
T Consensus 161 ~~~~~i~~livdAv~~V~~~~d~~~I~V~ki~gg~~~ds~lv~G~v~dk~~~~~----m~~~~en~kIll~~~~Le~~k~ 236 (513)
T 3iyg_B 161 HHKDHFTKLAVEAVLRLKGSGNLEAIHVIKKLGGSLADSYLDEGFLLDKKIGVN----QPKRIENAKILIANTGMDTDKI 236 (513)
T ss_pred cchHHHHHHHHHHHHHhcccCCcCeEEEEEeCCCCccceeEEeeEEEeccccCC----CceeecCceEEEEcCCcccccc
Confidence 999999999999999998644778999999999999999999999999999876 6899999999999999999999
Q ss_pred c-cCceEEecCHHhHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcccHHHHHHHHhcCccccCCCChHHHHHHHHHhCC
Q 008527 253 K-ENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAAATGG 331 (562)
Q Consensus 253 ~-~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lIi~~~~v~~~al~~l~~~~I~~v~~v~~~~Le~Ia~~TGa 331 (562)
+ .++++.+++++++.++.+.|+++++++++++++.|++||+++++|++.+++||.++||++++++++.+|+|||++|||
T Consensus 237 e~~~~~v~iss~~~l~~~~~~E~~~l~~~le~I~~~g~~vvi~~~~I~~~al~~L~~~~I~av~~~~~~~le~ia~~tGa 316 (513)
T 3iyg_B 237 KIFGSRVRVDSTAKVAEIEHAEKEKMKEKVERILKHGINCFINRQLIYNYPEQLFGAAGVMAIEHADFVGVERLALVTGG 316 (513)
T ss_pred cccCCceEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEcCCccHHHHHHHHHcCceEEecCCHHHHHHHHHHhCC
Confidence 9 899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEecccCCCCCCcccccceEEEEEECCeEEEEEEcCCCCceEEEEeecCCHHHHHHHHHHHHHHHHHHHHHHhCCceecc
Q 008527 332 TVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAG 411 (562)
Q Consensus 332 ~ii~sl~~l~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~~~~TIll~G~t~~~l~e~k~~i~dal~~~~~~l~~~~vvpG 411 (562)
++++++++++++++|+|+.|++..+|+++|++|+||++++.|||+|||+|+.+++|.||+++||++++|++++++++|||
T Consensus 317 ~ii~~l~~l~~~~LG~a~~v~~~~ig~~~~~~~~g~~~~~~~tI~lrG~t~~~l~E~kr~l~DAl~~~r~av~~~~iVpG 396 (513)
T 3iyg_B 317 EIASTFDHPELVKLGSCKLIEEVMIGEDKLIHFSGVALGEACTIVLRGATQQILDEAERSLHDALCVLAQTVKDSRTVYG 396 (513)
T ss_pred EEecccccCCHhHCCcccEEEEEEECCeEEEEEecCCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhCCcEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999889999
Q ss_pred CCccHHHHHHHHHHHhhhccchHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHhccCCCCCCCceeEecCCCCcc
Q 008527 412 GGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIA 491 (562)
Q Consensus 412 GG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~~~~Gid~~~g~~~ 491 (562)
||++|++++.+|++++.+.++++|+++++|++||+.||++|++|||+|+.+++.+|++.|.. ++ .++|||+.+|++.
T Consensus 397 GGa~e~~~~~~L~~~~~~~~g~~q~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~--~~-~~~G~d~~~g~~~ 473 (513)
T 3iyg_B 397 GGCSEMLMAHAVTQLASRTPGKEAVAMESYAKALRMLPTIIADNAGYDSADLVAQLRAAHSE--GK-TTAGLDMKEGTIG 473 (513)
T ss_pred CcHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc--CC-CceeecCCCCCcc
Confidence 99999999999999998889999999999999999999999999999999999999999976 66 7899999999999
Q ss_pred ccccCCcccchHHHHHHHHHHHHHHHHHHchhHhhcCCCc
Q 008527 492 DSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPKV 531 (562)
Q Consensus 492 d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~iI~~~~~ 531 (562)
||++.|||||+.||+++|++|+|+|++|||||++|...|+
T Consensus 474 d~~~~gI~dp~~vk~~al~~A~~~a~~iL~id~ii~~~~~ 513 (513)
T 3iyg_B 474 DMSVLGITESFQVKRQVLLSAAEAAEVILRVDNIIKAAPR 513 (513)
T ss_pred chHhccCEecHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999999999988763
No 9
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A*
Probab=100.00 E-value=2.6e-113 Score=934.76 Aligned_cols=513 Identities=38% Similarity=0.634 Sum_probs=484.5
Q ss_pred hHhhccccccccccHHHHHHHHHHHHHHHHHhhhccCCCCCceeeeCCCCCeEEecCHHHHhccccccChHHHHHHHHHH
Q 008527 8 QIILLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAK 87 (562)
Q Consensus 8 ~~~~~~~~~~~~~g~~~~~~n~~~~~~l~~iv~sslGP~G~~kmI~~~~g~~~iTnDG~tIl~~l~~~hP~akll~~~~~ 87 (562)
|+.+++++.++.+|.++|.+|+.||+.|+++|+|||||+||+|||+++.|+++|||||+|||++|+++||+|||++++|+
T Consensus 7 ~~~~l~~~~~~~~g~~a~~~ni~a~~~la~~vkttLGP~G~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~Akll~e~a~ 86 (545)
T 1a6d_A 7 PILVLKEGTQREQGKNAQRNNIEAAKAIADAVRTTLGPKGMDKMLVDSIGDIIISNDGATILKEMDVEHPTAKMIVEVSK 86 (545)
T ss_dssp ----------CEEHHHHHHHHHHHHHHHHHHHHTTCSTTCCEEEEECSSSCEEEECCHHHHHHHSCCCSHHHHHHHGGGG
T ss_pred cccccCCcchhhchHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCeEEeCcHHHHHHhhhccchHHHHHHHHHH
Confidence 57789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccCCchhHHHHHHHHHHHHHHHhHHCCCChhhHHHHHHHHHHHHHHHHHhhceeccCCChHHHHHHHHHHHHHhhc
Q 008527 88 SQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLS 167 (562)
Q Consensus 88 ~~~~~~GDGTtt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~v~~~~~~~~~~~l~~ia~tsl~ 167 (562)
+||+++||||||++|||++||+++.+++++|+||+.|++||++|++.+++.|+++++| + .+ ++.|.++|+|+|+
T Consensus 87 ~qd~e~GDGTTtvvvLA~~LL~~a~~ll~~GihP~~I~~G~~~A~~~a~~~L~~~s~~-~-~~----~~~l~~va~tsl~ 160 (545)
T 1a6d_A 87 AQDTAVGDGTTTAVVLSGELLKQAETLLDQGVHPTVISNGYRLAVNEARKIIDEIAEK-S-TD----DATLRKIALTALS 160 (545)
T ss_dssp CTTTCSTTHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHCEE-C-CC----HHHHHHHHHHHTT
T ss_pred hcCCEECCChhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcCC-C-CC----HHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999998 5 33 7899999999999
Q ss_pred cCccCchhHHHHHHHHHHHHHhCCC-----C-CCcceeEEEecCCCcccceeEEEEEEecccCCCcccCCcceecCceEE
Q 008527 168 SKLIGGEKEFFASMVVDAVGAIGDG-----D-RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKIL 241 (562)
Q Consensus 168 sk~~~~~~~~ls~li~~Av~~v~~~-----~-d~~~I~i~~i~gg~~~ds~li~Giv~~~~~~~~~~~~~~~~l~n~kIl 241 (562)
||+.++|+++|++++++|+.+++++ + |.++|+|++++|++++||++++|++|+++|.|||| |++++||||+
T Consensus 161 sKi~~~~~~~i~~livdAv~~v~~~~~g~~~~d~~~I~V~k~~G~~~~ds~lv~G~v~dk~~~~~~m---~~~ien~kIl 237 (545)
T 1a6d_A 161 GKNTGLSNDFLADLVVKAVNAVAEVRDGKTIVDTANIKVDKKNGGSVNDTQFISGIVIDKEKVHSKM---PDVVKNAKIA 237 (545)
T ss_dssp TSSCCSTHHHHHHHHHHHHHHHCEESSSSEECCGGGEEEEECCCSCSTTCEEESEEEESCCCSCTTS---CSEEEEEEEE
T ss_pred cccccccHHHHHHHHHHHHHHHhcccCCCcccccceEEEEEecCCCceeeEEEeeEEEeccCCCCCC---cceecCCEEE
Confidence 9999999999999999999999754 1 56899999999999999999999999999999986 7999999999
Q ss_pred EeeccccccccccCceEEecCHHhHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcccHHHHHHHHhcCccccCCCChHH
Q 008527 242 LLNIELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEED 321 (562)
Q Consensus 242 l~~~~Le~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lIi~~~~v~~~al~~l~~~~I~~v~~v~~~~ 321 (562)
+++++|++++++.++++.++++++++++.++|+++++++++++++.|++|||++++|++.+++||.++||++++++++++
T Consensus 238 l~~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g~~lvi~~~~I~~~al~~L~~~~I~av~~~~k~~ 317 (545)
T 1a6d_A 238 LIDSALEIKKTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGANVVLCQKGIDDVAQHYLAKEGIYAVRRVKKSD 317 (545)
T ss_dssp EECSCBSCCCCSSCCEEEECSTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEESSCBCHHHHHHHHHHTCEEECSCCHHH
T ss_pred EEecCCCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEECCCccHHHHHHHHHCCeeEeccCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCeEecccCCCCCCcccccceEEEEEECCeEEEEEEcCCCCceEEEEeecCCHHHHHHHHHHHHHHHHHHHH
Q 008527 322 LLRVAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRR 401 (562)
Q Consensus 322 Le~Ia~~TGa~ii~sl~~l~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~~~~TIll~G~t~~~l~e~k~~i~dal~~~~~ 401 (562)
|+|||++|||++++++++++++++|+|+.|++.++|+++|++|+||++++.|||+|||+|+.+++|.||+++||++++|+
T Consensus 318 le~ia~~tGa~iis~l~~~~~~~LG~a~~v~~~~ig~~~~~~~~g~~~~~~~TI~lrG~te~~l~E~kr~l~DAl~~~r~ 397 (545)
T 1a6d_A 318 MEKLAKATGAKIVTDLDDLTPSVLGEAETVEERKIGDDRMTFVMGCKNPKAVSILIRGGTDHVVSEVERALNDAIRVVAI 397 (545)
T ss_dssp HHHHHHHHCCCEESSGGGCCGGGCEEEEEEEEEEETTEEEEEEEEESCSSCEEEEECCSSSTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCeeecccccCCHHHCCCceEEEEEEecCceEEEEecCCCCceEEEEEcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCceeccCCccHHHHHHHHHHHhhhccchHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHhccCCCCCCCce
Q 008527 402 ATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPY 481 (562)
Q Consensus 402 ~l~~~~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~~~~ 481 (562)
++++|++|||||++|++++++|++++...++++|+++++|++||+.||++|++|||+|+.+++.+|+..|.. ++ .++
T Consensus 398 a~~~g~iVpGGGa~e~~~~~~L~~~~~~~~g~~q~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~--~~-~~~ 474 (545)
T 1a6d_A 398 TKEDGKFLWGGGAVEAELAMRLAKYANSVGGREQLAIEAFAKALEIIPRTLAENAGIDPINTLIKLKADDEK--GR-ISV 474 (545)
T ss_dssp HHHHCEEEETTTHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTHHHHHHHHHHTSCHHHHHHHHHHHHHT--TC-TTE
T ss_pred HHhCCCEEeCcCHHHHHHHHHHHHHhhccCccHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhc--CC-CCc
Confidence 999999999999999999999999998889999999999999999999999999999999999999998865 55 789
Q ss_pred eEecCCCCccccccCCcccchHHHHHHHHHHHHHHHHHHchhHhhcCCCcC
Q 008527 482 GVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPKVV 532 (562)
Q Consensus 482 Gid~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~iI~~~~~~ 532 (562)
|||+.+|++.||.+.|||||+.||+++|++|+|+|++|||||++|...|.+
T Consensus 475 G~d~~~g~~~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~id~iI~~~~~~ 525 (545)
T 1a6d_A 475 GVDLDNNGVGDMKAKGVVDPLRVKTHALESAVEVATMILRIDDVIASKKST 525 (545)
T ss_dssp EEETTTTEEEEHHHHTCEEEHHHHHHHHHHHHHHHHHHHTCCEEC------
T ss_pred ceecccCccccchhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 999999999999999999999999999999999999999999999987654
No 10
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=100.00 E-value=3.4e-112 Score=921.01 Aligned_cols=505 Identities=31% Similarity=0.551 Sum_probs=485.0
Q ss_pred ccccccHHHHHHHHHHHHHHHHHhhhccCCCCCceeeeCCCCCeEEecCHHHHhccccccChHHHHHHHHHHhcccccCC
Q 008527 16 TDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGD 95 (562)
Q Consensus 16 ~~~~~g~~~~~~n~~~~~~l~~iv~sslGP~G~~kmI~~~~g~~~iTnDG~tIl~~l~~~hP~akll~~~~~~~~~~~GD 95 (562)
.++++|.+++.+|+.||+.|+++|+|||||+||+|||+++.|+++|||||+|||++|+++||+|||++++|++||+++||
T Consensus 2 ~~~~~g~~~~~~ni~a~~~la~~vkttLGP~G~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~Akll~e~a~~qd~e~GD 81 (515)
T 3iyg_G 2 TKRESGRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAILREIQVQHPAAKSMIEISRTQDEEVGD 81 (515)
T ss_pred CcccchHHHHHHHHHHHHHHHHHHhcCcCCCCCeEEEECCCCCeEEECCHHHHHHhcccCCHHHHHHHHHHHHhhhhhCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHhHHCCCChhhHHHHHHHHHHHHHHHHHhhceeccCCChHHHHHHHHHHHHHhhccCccCchh
Q 008527 96 GTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEK 175 (562)
Q Consensus 96 GTtt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~v~~~~~~~~~~~l~~ia~tsl~sk~~~~~~ 175 (562)
||||+||||++||+++.+++++|+||+.|++||++|++.+++.|+++++|++..+ ++.|.++|+|+++||.++.|.
T Consensus 82 GTTtvvvLAgeLL~~a~~ll~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~~----~~~l~~va~tsl~sK~i~~~~ 157 (515)
T 3iyg_G 82 GTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRKALDDMISTLKKISIPVDTSN----RDTMLNIINSSITTKVISRWS 157 (515)
T ss_pred ChhhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCC----HHHHHHHHHHHhcCCchhhHH
Confidence 9999999999999999999999999999999999999999999999999988654 689999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCC-C-----CC-cceeEEEecCCCcccceeEEEEEEecccCCCcccCCcceecCceEEEeecccc
Q 008527 176 EFFASMVVDAVGAIGDG-D-----RL-NMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNIELE 248 (562)
Q Consensus 176 ~~ls~li~~Av~~v~~~-~-----d~-~~I~i~~i~gg~~~ds~li~Giv~~~~~~~~~~~~~~~~l~n~kIll~~~~Le 248 (562)
++++++++||+..+.++ + |. ++|+|++++||+++||++++|++|++++.||+ ||++++||||++++++||
T Consensus 158 ~~~~~i~vdav~~V~~~~~~~~~~dl~~~I~I~ki~Ggs~~ds~lv~G~v~dk~~~~~~---m~~~ien~kIll~~~~Le 234 (515)
T 3iyg_G 158 SLACNIALDAVKTVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPR---MRRYIKNPRIVLLDSSLE 234 (515)
T ss_pred HHHHHHHHHHHHhcccccCCCcccchhheeEEEEecCCCcccceEEeeEEEeCCCCCCC---CcceeeeeEEEEEccccc
Confidence 99999999999988732 1 33 34999999999999999999999999999986 589999999999999999
Q ss_pred ccccccCceEEecCHHhHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcccHHHHHHHHhcCccccCCCChHHHHHHHHH
Q 008527 249 LKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAAA 328 (562)
Q Consensus 249 ~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lIi~~~~v~~~al~~l~~~~I~~v~~v~~~~Le~Ia~~ 328 (562)
++++++++++.+++++++.++.++|+++++++++++++.|++||+++++|++++++||.++||++++++++++|+|||++
T Consensus 235 ~~k~e~~~~v~is~~~~l~~~l~~E~~~l~~~v~kI~~~g~~vIi~~~~I~~~al~~L~~~~I~av~~~~k~~leria~~ 314 (515)
T 3iyg_G 235 YKKGESQTDIEITREEDFTRILQMEEEYIQQLCEDIIQLKPDVVITEKGISDLAQHYLMRANITAIRRVRKTDNNRIARA 314 (515)
T ss_pred ccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEECCccCHHHHHHHHHCCceeeccCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCeEecccCCCCCCcccc-cceEEEEEECCeEEEEEEcCCCCceEEEEeecCCHHHHHHHHHHHHHHHHHHHHHHhCCc
Q 008527 329 TGGTVQTSVNNVVDEVLGT-CEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNST 407 (562)
Q Consensus 329 TGa~ii~sl~~l~~~~lG~-~~~v~~~~ig~~~~~~~~g~~~~~~~TIll~G~t~~~l~e~k~~i~dal~~~~~~l~~~~ 407 (562)
|||++++++++++++++|+ |+.|++.++|+++|++|+||++++.|||+|||+|+.+++|.||+++|||+++|+++++++
T Consensus 315 tGa~ii~~l~~l~~~~LG~~a~~v~~~~~g~~~~~~i~g~~~~~~~TIllrG~t~~~l~E~er~i~Dal~~~r~~~~~~~ 394 (515)
T 3iyg_G 315 CGARIVSRPEELREEDVGTGAGLLEIKKIGDEYFTFITECKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQ 394 (515)
T ss_pred hCCeeeccccccChhhcCCcccEEEEEEECCceEEEEeCCCCCCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHHHhhCCc
Confidence 9999999999999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCccHHHHHHHHHHHhhhccchHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHhccCCCCCCCceeEecCC
Q 008527 408 VVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINT 487 (562)
Q Consensus 408 vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~~~~Gid~~~ 487 (562)
+|||||++|++++.+|++++...++++|+++++||+||+.||++|++|||+|+.+++.+|++.|.. +.+.++|+|+.+
T Consensus 395 ivpGGGa~e~~~~~~L~~~~~~~~g~eq~~i~~~a~Ale~ip~~La~NaG~d~~~~v~~l~~~h~~--~~~~~~G~d~~~ 472 (515)
T 3iyg_G 395 LVPGGGASEMAVAHALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQ--ENCETWGVNGET 472 (515)
T ss_pred EEeCCCHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh--cCCCceeeeCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999865 321679999999
Q ss_pred CCccccccCCcccchHHHHHHHHHHHHHHHHHHchhHhhcCC
Q 008527 488 GGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNP 529 (562)
Q Consensus 488 g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~iI~~~ 529 (562)
|++.||++.|||||+.||+++|++|+|+|++|||||++|...
T Consensus 473 g~~~d~~~~gi~dp~~vk~~al~~A~e~a~~iL~iD~ii~~~ 514 (515)
T 3iyg_G 473 GTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRIDDIVSGH 514 (515)
T ss_pred CcccccHHcCCEEcHHHHHHHHHHHHHHHHHHHHHHheeecC
Confidence 999999999999999999999999999999999999999753
No 11
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* 4d8q_A* 4d8r_a*
Probab=100.00 E-value=4.8e-113 Score=934.31 Aligned_cols=523 Identities=35% Similarity=0.578 Sum_probs=494.8
Q ss_pred CcccCch-hHhhccccccccccHHHHHHHHHHHHHHHHHhhhccCCCCCceeeeCCCCCeEEecCHHHHhccccccChHH
Q 008527 1 MAAMMQP-QIILLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAA 79 (562)
Q Consensus 1 ~~~~~~~-~~~~~~~~~~~~~g~~~~~~n~~~~~~l~~iv~sslGP~G~~kmI~~~~g~~~iTnDG~tIl~~l~~~hP~a 79 (562)
|+.|.++ +..-|+++.++.+|.++|.+|+.||+.|+++|+|||||+||+|||+++.|+++|||||+|||++|+++||+|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~g~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~A 80 (559)
T 3p9d_A 1 MSQLFNNSRSDTLFLGGEKISGDDIRNQNVLATMAVANVVKSSLGPVGLDKMLVDDIGDFTVTNDGATILSLLDVQHPAG 80 (559)
T ss_dssp -------CCCCSCCSSCEEEETHHHHHHHHHHHHHHHHHTTTTSSTTCCEEEECCSSSCCCEECCHHHHHHHHCCCSHHH
T ss_pred CCccccCCccchhhccccccchHHHHHHHHHHHHHHHHHHHhccCCCCCeeEeEcCCCCEEEECCHHHHHHHhcCCCHHH
Confidence 5666433 445578999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccccCCchhHHHHHHHHHHHHHHHhHHCCCChhhHHHHHHHHHHHHHHHHHh-hceeccCCChHHHHHHH
Q 008527 80 KILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKE-LAKSIEGQSLEEKKRLL 158 (562)
Q Consensus 80 kll~~~~~~~~~~~GDGTtt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~l~~L~~-~s~~v~~~~~~~~~~~l 158 (562)
||++++|++||+++||||||+||||++||+++.+++++|+||+.|++||++|++.+++.|++ +++|++..+ ++.|
T Consensus 81 kll~e~a~~qd~e~GDGTTtvvVLA~~LL~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~~s~~v~~~~----~e~L 156 (559)
T 3p9d_A 81 KILVELAQQQDREIGDGTTSVVIIASELLKRANELVKNKIHPTTIITGFRVALREAIRFINEVLSTSVDTLG----KETL 156 (559)
T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHTGGGSCC------CTTH
T ss_pred HHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCCCC----HHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999 999987633 5789
Q ss_pred HHHHHHhhccCccCchhHHHHHHHHHHHHHhCC-C-----C-CCcceeEEEecCCCcccceeEEEEEEecccCCCcccCC
Q 008527 159 SKCAATTLSSKLIGGEKEFFASMVVDAVGAIGD-G-----D-RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQ 231 (562)
Q Consensus 159 ~~ia~tsl~sk~~~~~~~~ls~li~~Av~~v~~-~-----~-d~~~I~i~~i~gg~~~ds~li~Giv~~~~~~~~~~~~~ 231 (562)
.++|+||++||++++|+++|++|+++|+.++++ + . |.+.|+|+++.|++++||++++|++|+++|.||||
T Consensus 157 ~~vA~tsl~sK~~~~~~~~i~~livdAv~~V~~~~~~~~~~i~l~~I~I~k~~Ggs~~ds~lv~G~v~dk~~~~~~m--- 233 (559)
T 3p9d_A 157 INIAKTSMSSKIIGADSDFFSNMVVDALLAVKTQNSKGEIKYPVKAVNVLKAHGKSATESLLVPGYALNCTVASQAM--- 233 (559)
T ss_dssp HHHHHHTTSSSGGGTTHHHHHHHHHHHHHHHCCEESSSCEECCTTCCCEEEEESSCSSCCBCCSEECCCCCCSSTTS---
T ss_pred HHHHHHHhccCcccchhHHHHHHHHHHHHHhcccccCCCCccchhHeEEEEecCCCccceeEeccEEEeecccCCCc---
Confidence 999999999999999999999999999999984 1 1 67889999999999999999999999999999985
Q ss_pred cceec--CceEEEeeccccccccccCceEEecCHHhHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcccHHHHHHHHhc
Q 008527 232 PKKFL--NPKILLLNIELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADR 309 (562)
Q Consensus 232 ~~~l~--n~kIll~~~~Le~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lIi~~~~v~~~al~~l~~~ 309 (562)
|++++ ||||++++++|++++++.++++.++++++++++.++|+++++++++++++.|++|||++++|++.+++||.++
T Consensus 234 ~~~ie~~n~kIll~~~~Le~~k~e~~~~v~is~~~~l~~i~~~E~~~l~~~le~I~~~g~~lvI~~~~I~~~al~~L~~~ 313 (559)
T 3p9d_A 234 PKRIAGGNVKIACLDLNLQKARMAMGVQINIDDPEQLEQIRKREAGIVLERVKKIIDAGAQVVLTTKGIDDLCLKEFVEA 313 (559)
T ss_dssp CSEECSSSBCEEEETTCCSCCCCCTTCCEEECSSSCHHHHHHHHHHHHHHHHHHHHTTCCSEEEESSCCCGGGTHHHHHT
T ss_pred ceeeccCCceEEEEeccccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCEEEEcCCCCHHHHHHHHHc
Confidence 79999 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCCChHHHHHHHHHhCCeEeccc------CCCCCCcccccceEEEEEECCeEEEEEEcCCCCceEEEEeecCCHH
Q 008527 310 DIFCAGRVAEEDLLRVAAATGGTVQTSV------NNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQ 383 (562)
Q Consensus 310 ~I~~v~~v~~~~Le~Ia~~TGa~ii~sl------~~l~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~~~~TIll~G~t~~ 383 (562)
||++++++++++|+|||++|||++++++ ++++++++|+|+.|++.++++++|++|+||.++..|||+|||+|+.
T Consensus 314 ~I~av~~~~k~~le~ia~~TGa~iis~~~~l~~~e~~~~~~LG~a~~v~~~~ig~~~~~~~~g~~~~~~~tI~lrG~te~ 393 (559)
T 3p9d_A 314 KIMGVRRCKKEDLRRIARATGATLVSSMSNLEGEETFESSYLGLCDEVVQAKFSDDECILIKGTSKHSSSSIILRGANDY 393 (559)
T ss_dssp TCEEESSCCHHHHHHHHHHSSCCCBCCSCCSTTCCCCCTTTSCCEEEEEEEECSSCEEECEEEESSSCCCCEEEEESCHH
T ss_pred CCceEccCCHHHHHHHHHHhCCEEEeccccccccccCCHhHCccceEEEEEEEcCceEEEEEcCCCCCEEEEEEcCCCHH
Confidence 9999999999999999999999999998 7889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCceeccCCccHHHHHHHHHHHhhhccchHHHHHHHHHHHHhHHHHHHHHhcCCCHHHH
Q 008527 384 FIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDV 463 (562)
Q Consensus 384 ~l~e~k~~i~dal~~~~~~l~~~~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~~ 463 (562)
+++|+||+++|||+++|+++++|++|||||++|++++.+|++++.+.++++|+++++|++||+.||++|++|||+|+.++
T Consensus 394 ~l~E~kr~l~DAL~~~r~av~~g~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~v 473 (559)
T 3p9d_A 394 SLDEMERSLHDSLSVVKRTLESGNVVPGGGCVEAALNIYLDNFATTVGSREQLAIAEFAAALLIIPKTLAVNAAKDSSEL 473 (559)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSCEECTTTTHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHHHHHHHHHHTSSSCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCEEeCccHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
Confidence 99999999999999999999999999999999999999999999889999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCCCCC------------ceeEecCCCCccccccCCcccchHHHHHHHHHHHHHHHHHHchhHhhcCCCc
Q 008527 464 LNKLRQKHALPTGEGA------------PYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPKV 531 (562)
Q Consensus 464 ~~~l~~~~~~~~~~~~------------~~Gid~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~iI~~~~~ 531 (562)
+.+|++.|.+ ++ . ++|||+.+|++.||++.|||||+.||+++|++|+|+|++|||||++|...|+
T Consensus 474 v~~l~~~h~~--~~-~~~~~~~~~~~~~~~G~d~~~g~~~dm~~~gI~dp~~vk~~al~~A~e~a~~iL~id~ii~~~~~ 550 (559)
T 3p9d_A 474 VAKLRSYHAA--SQ-MAKPEDVKRRSYRNYGLDLIRGKIVDEIHAGVLEPTISKVKSLKSALEACVAILRIDTMITVDPE 550 (559)
T ss_dssp HHHHHHHHHT--TS-CCC----CCCCCCCEEECTTSSSEEESTTSSCCEEHHHHHHHHHHHHHHHHHHHTEEEEEECCCC
T ss_pred HHHHHHHHhc--cc-cccccccccccccceeEECCCCcEeehhhccCEecHHHHHHHHHHHHHHHHHHHhHHhhhhcCCc
Confidence 9999999865 33 3 7999999999999999999999999999999999999999999999998776
Q ss_pred CC
Q 008527 532 VC 533 (562)
Q Consensus 532 ~~ 533 (562)
+.
T Consensus 551 ~~ 552 (559)
T 3p9d_A 551 PP 552 (559)
T ss_dssp CC
T ss_pred cc
Confidence 55
No 12
>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=100.00 E-value=1e-110 Score=910.28 Aligned_cols=506 Identities=30% Similarity=0.503 Sum_probs=486.1
Q ss_pred ccccccHHHHHHHHHHHHHHHHHhhhccCCCCCceeeeCCCCCeEEecCHHHHhccccccChHHHHHHHHHHhcccccCC
Q 008527 16 TDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGD 95 (562)
Q Consensus 16 ~~~~~g~~~~~~n~~~~~~l~~iv~sslGP~G~~kmI~~~~g~~~iTnDG~tIl~~l~~~hP~akll~~~~~~~~~~~GD 95 (562)
+++.+|.++|.+|+.||+.|+++|+|||||+||+|||+++.|+++|||||+|||++|+++||+|||++++|++||+++||
T Consensus 3 ~~~~~g~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~g~~~iTnDG~tIlk~i~~~hP~Akll~~~a~~qd~~~GD 82 (515)
T 3iyg_E 3 KSRLMGLEALKSHIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGD 82 (515)
T ss_pred chhhchHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEEcCCCCeEEeCcHHHHHHHcccCCHHHHHHHHHHHHhhhhhCC
Confidence 45779999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHhHHCCCChhhHHHHHHHHHHHHHHHHHhhceeccCCChHHHHHHHHHHHHHhhccCccCchh
Q 008527 96 GTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEK 175 (562)
Q Consensus 96 GTtt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~v~~~~~~~~~~~l~~ia~tsl~sk~~~~~~ 175 (562)
||||++|||++||+++.+++++|+||+.|++||++|++.+++.|+++++|++... .+++.|.++|+||++||+++.+.
T Consensus 83 GTTtvvVLA~~Ll~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~~--~~~~~l~~vA~tsl~sK~i~~~~ 160 (515)
T 3iyg_E 83 GTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARIAIEHLDKISDSVLVDM--KNTEPLIQTAKTTLGSKVVNSCH 160 (515)
T ss_pred chhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhceecCCCc--cCHHHHHHHHHHHhcccchhHHH
Confidence 9999999999999999999999999999999999999999999999999986521 23689999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCC---C-CCcceeEEEecCCCcccceeEEEEEEecccCCCcccCCcceecCceEEEeeccccccc
Q 008527 176 EFFASMVVDAVGAIGDG---D-RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNIELELKS 251 (562)
Q Consensus 176 ~~ls~li~~Av~~v~~~---~-d~~~I~i~~i~gg~~~ds~li~Giv~~~~~~~~~~~~~~~~l~n~kIll~~~~Le~~~ 251 (562)
+.|+++++||+..+.+. + |.++|+|+++.||+++||++++|++|+++|.|||| |++.+||+|+++++++++.+
T Consensus 161 ~~l~~l~~dav~~V~~~~~~~~d~~~I~I~k~~Ggs~~ds~lv~G~~~dk~~~~~~m---~~~~~~~kIall~~~le~~k 237 (515)
T 3iyg_E 161 RQMAEIAVNAVLTVADMQRRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQM---PKQVEDAKIAILTCPFEPPK 237 (515)
T ss_pred HHHHHHHHHHHHhhcccccCCCCcccEEEEEecCCCcccceEEeeEEEecccccccc---cccCCCceEEEEcCcccccc
Confidence 99999999999998753 2 67899999999999999999999999999999985 78999999999999999999
Q ss_pred cccCceEEecCHHhHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcccHHHHHHHHhcCccccCCCChHHHHHHHHHhCC
Q 008527 252 EKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAAATGG 331 (562)
Q Consensus 252 ~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lIi~~~~v~~~al~~l~~~~I~~v~~v~~~~Le~Ia~~TGa 331 (562)
++.++++.++++++++++.++|+++++++++++++.|++|||++++|++.+++||.++||++++++++++|+|||++|||
T Consensus 238 ~~~~~~~~is~~~~l~~~~~~E~~~l~~~lekI~~~g~~vvi~~~~I~~~al~~L~~~~I~~v~~v~k~~le~ia~~tGa 317 (515)
T 3iyg_E 238 PKTKHKLDVTSVEDFKALQKYEKEKFEEMIRQIKETGANLAVCQWGFDDEANHLLLQNDLPAVRWVGGPEIELIAIATGG 317 (515)
T ss_pred ccccceeeeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHHHHHHCCCEEEeccCHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEecccCCCCCCcccccceEEEEEECC--eEEEEEEcCCCCceEEEEeecCCHHHHHHHHHHHHHHHHHHHHHHhCCcee
Q 008527 332 TVQTSVNNVVDEVLGTCEHFEERQVGN--ERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVV 409 (562)
Q Consensus 332 ~ii~sl~~l~~~~lG~~~~v~~~~ig~--~~~~~~~g~~~~~~~TIll~G~t~~~l~e~k~~i~dal~~~~~~l~~~~vv 409 (562)
++++++++++++++|+|+.|++.++|+ +++++|+||++++.|||+|||+|+.+++|.||+++|||+++|+++++|++|
T Consensus 318 ~ii~~l~~l~~~~LG~a~~v~~~~ig~~k~~~~~~~g~~~~~~~tI~lrG~te~~l~E~kr~i~DAl~~~r~a~~~~~iV 397 (515)
T 3iyg_E 318 RIVPRFSELTAEKLGFAGLVKEISFGTTKDKMLVIEQCKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVV 397 (515)
T ss_pred EEecccccCCHHHCCcceEEEEEEeccccceEEEEEcCCCCceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHhcCCcC
Confidence 999999999999999999999999997 899999999999999999999999999999999999999999999999999
Q ss_pred ccCCccHHHHHHHHHHHhhhccchHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHhccCCCCCCCceeEecCCCC
Q 008527 410 AGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGG 489 (562)
Q Consensus 410 pGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~~~~Gid~~~g~ 489 (562)
||||++|++++.+|++++.+.++++|+++++|++||+.||++|++|||+|+.+++.+|++.|... ++ .++|||+.+|+
T Consensus 398 pGGGa~e~~~~~~L~~~~~~~~g~~q~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~-~~-~~~G~d~~~g~ 475 (515)
T 3iyg_E 398 YGGGAAEISCALAVSQEADKCPTLEQYAMRAFADALEVIPMALAENSGMNPIQTMTEVRARQVKE-VN-PALGIDCLHKG 475 (515)
T ss_pred CCCcHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcc-CC-CeeeEecCCCc
Confidence 99999999999999999988899999999999999999999999999999999999999998641 33 78999999999
Q ss_pred ccccccCCcccchHHHHHHHHHHHHHHHHHHchhHhhcC
Q 008527 490 IADSFANFVWEPAVVKINAINAATEAACLILSVDETVKN 528 (562)
Q Consensus 490 ~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~iI~~ 528 (562)
+.||++.|||||+.||+++|++|+|+|++|||||++|+.
T Consensus 476 ~~d~~~~gI~dp~~vk~~al~~A~~~a~~iL~iD~ii~~ 514 (515)
T 3iyg_E 476 TNDMKHQHVIETLIGKKQQISLATQMVRMILKIDDIRKP 514 (515)
T ss_pred ccchHhccCEEcHHHHHHHHHHHHHHHHHHHhHHHhhcC
Confidence 999999999999999999999999999999999999975
No 13
>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* 4d8q_D* 4d8r_d*
Probab=100.00 E-value=8.1e-113 Score=927.58 Aligned_cols=511 Identities=31% Similarity=0.514 Sum_probs=493.6
Q ss_pred hhccccccccccHHHHHHHHHHHHHHHHHhhhccCCCCCceeeeCCCCCeEEecCHHHHhccccccChHHHHHHHHHHhc
Q 008527 10 ILLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQ 89 (562)
Q Consensus 10 ~~~~~~~~~~~g~~~~~~n~~~~~~l~~iv~sslGP~G~~kmI~~~~g~~~iTnDG~tIl~~l~~~hP~akll~~~~~~~ 89 (562)
.-++.+.++.+|.++|.+|+.||+.|+++|+|||||+||+|||+++.|+++|||||+|||++|+++||+++|++++|++|
T Consensus 6 ~~~~~~~~~~~g~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~akll~e~a~~q 85 (528)
T 3p9d_D 6 PSNATFKNKEKPQEVRKANIIAARSVADAIRTSLGPKGMDKMIKTSRGEIIISNDGHTILKQMAILHPVARMLVEVSAAQ 85 (528)
T ss_dssp -CCCSSCBCCCHHHHHHHHHHHHHHHHHHHTTTSSTTCCCEEEECSSCCEEEECCHHHHHHHSCCCCTTHHHHHHHHHHH
T ss_pred ccccccchhcchHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCeEEECCHHHHHHHcccCCHHHHHHHHHHHHh
Confidence 34677888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCchhHHHHHHHHHHHHHHHhHHCCCChhhHHHHHHHHHHHHHHHHHhhceeccCCChHHHHHHHHHHHHHhhccC
Q 008527 90 DSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSK 169 (562)
Q Consensus 90 ~~~~GDGTtt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~v~~~~~~~~~~~l~~ia~tsl~sk 169 (562)
|+++||||||++||+++||+++.+++++|+||+.|++||++|++.+++.|+++++|++..+ ++.|.++|+|+++||
T Consensus 86 d~e~GDGTTtvvVLA~~Ll~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~~----~e~l~~va~tsl~sK 161 (528)
T 3p9d_D 86 DSEAGDGTTSVVILTGALLGAAERLLNKGIHPTIIADSFQSAAKRSVDILLEMCHKVSLSD----REQLVRAASTSLSSK 161 (528)
T ss_dssp HHHTCSCSHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHTTCCCCCSCC----HHHHHHHHHHHSCSS
T ss_pred hhhhCCChhhHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHHhhCCCCCCC----HHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999999999999999999999987654 789999999999999
Q ss_pred ccCchhHHHHHHHHHHHHHhCCC---C-CCcceeEEEecCCCcccceeEEEEEEecccCCCcccCCcceecCceEEEeec
Q 008527 170 LIGGEKEFFASMVVDAVGAIGDG---D-RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNI 245 (562)
Q Consensus 170 ~~~~~~~~ls~li~~Av~~v~~~---~-d~~~I~i~~i~gg~~~ds~li~Giv~~~~~~~~~~~~~~~~l~n~kIll~~~ 245 (562)
++++|+++|++|+++|+.++++. . |.++|+|+++.|++++||++++|++|+++|.||+| ||++++||||+++++
T Consensus 162 ~~~~~~~~i~~livdAv~~V~~~~~~~i~v~~I~I~k~~Gg~~~ds~lv~G~v~dk~~~~~~~--m~~~ien~kIll~~~ 239 (528)
T 3p9d_D 162 IVSQYSSFLAPLAVDSVLKISDENSKNVDLNDIRLVKKVGGTIDDTEMIDGVVLTQTAIKSAG--GPTRKEKAKIGLIQF 239 (528)
T ss_dssp SCSTTHHHHHHHHHHHHHTTCCTTTTCCCGGGSBCCCCCSSCSCCCEEESSCBCCCCCCCSSS--CCSEESSEEEEEECC
T ss_pred ccchhHHHHHHHHHHHHHHhccccCCccceEEEEEEEecCCCccceEEEeeeEEeecccCccc--CcccccCceEEEEec
Confidence 99999999999999999999862 2 67899999999999999999999999999999986 799999999999999
Q ss_pred cccccccccCceEEecCHHhHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcc-----cHHHHHHHHhcCccccCCCChH
Q 008527 246 ELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAI-----GDLATQYFADRDIFCAGRVAEE 320 (562)
Q Consensus 246 ~Le~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lIi~~~~v-----~~~al~~l~~~~I~~v~~v~~~ 320 (562)
+|++++++.++++.++++++++++.++|+++++++++++++.|++|||++++| ++.+++||.++||+++++++++
T Consensus 240 ~le~~k~~~~~~i~i~~~~~~~~~~~~E~~~l~~~le~I~~~g~~vvi~~~~I~~~a~~~~al~~L~~~~I~av~~~~k~ 319 (528)
T 3p9d_D 240 QISPPKPDTENNIIVNDYRQMDKILKEERAYLLNICKKIKKAKCNVLLIQKSILRDAVNDLALHFLSKLNIMVVKDIERE 319 (528)
T ss_dssp CSSCCCCSSEEEEEESSSSHHHHHTHHHHHHHHHHHHHHHHTTCCEEEESSCSCTTSCSCHHHHHHTTTSCCEEECCCTH
T ss_pred cccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeCCcccccCCHHHHHHHHHcCcEEEEeCCHH
Confidence 99999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHHHHhCCeEecccCCCCCCcccccceEEEEEECCeEEEEEEcCC--C-CceEEEEeecCCHHHHHHHHHHHHHHHH
Q 008527 321 DLLRVAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCP--S-GRTATIVLRGGADQFIEEAERSLHDAIM 397 (562)
Q Consensus 321 ~Le~Ia~~TGa~ii~sl~~l~~~~lG~~~~v~~~~ig~~~~~~~~g~~--~-~~~~TIll~G~t~~~l~e~k~~i~dal~ 397 (562)
+|+|||++|||++++++++++++++|+|+.|++.++++++|++|+||+ + +..|||+|||+|+.+++|.||+++||++
T Consensus 320 ~le~ia~~tGa~ii~~~~~l~~~~LG~a~~v~~~~ig~~~~~~i~g~~~~~~~~~~tI~lrG~te~~l~E~kr~i~DAl~ 399 (528)
T 3p9d_D 320 EIEFLSKGLGCKPIADIELFTEDRLDSADLVEEIDSDGSKIVRVTGIRNNNARPTVSVVIRGANNMIIDETERSLHDALC 399 (528)
T ss_dssp HHHHHHHHHTCCCCSCSTTCCSSSEEEESCEECCEETTEECCBCTTBCCGGGCCCCEEECCCSSTTHHHHHHHHHTTTHH
T ss_pred HHHHHHHHHCCEEecccccCCHHHCCcccEEEEEEECCEEEEEEEcccccCCCceEEEEEcCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998 6 8899999999999999999999999999
Q ss_pred HHHHHHhCCceeccCCccHHHHHHHHHHHhhhccchHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHhccCCCCC
Q 008527 398 IVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGE 477 (562)
Q Consensus 398 ~~~~~l~~~~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~ 477 (562)
++|+++++|++|||||++|++++.+|++++.+.++++|+++++|++||+.||++|++|||+|+.+++.+|++.|.. ++
T Consensus 400 ~~r~av~~~~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~vv~~l~~~h~~--~~ 477 (528)
T 3p9d_D 400 VIRCLVKERGLIAGGGAPEIEISRRLSKEARSMEGVQAFIWQEFASALEVIPTTLAENAGLNSIKVVTELRSKHEN--GE 477 (528)
T ss_dssp HHHHHHHSSCEEETTTHHHHHHHHHHHHCCTTSCHHHHTTHHHHHHHHTHHHHHHHHTTSSCHHHHHHHHTTCCCS--SS
T ss_pred HHHHHHhcCCccCCCCHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc--cC
Confidence 9999999999999999999999999999988889999999999999999999999999999999999999999876 66
Q ss_pred CCceeEecCCCCccccccCCcccchHHHHHHHHHHHHHHHHHHchhHhhcCC
Q 008527 478 GAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNP 529 (562)
Q Consensus 478 ~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~iI~~~ 529 (562)
.++|||+.+|++.||++.|||||+.||+++|++|+|+|++|||||++|+.+
T Consensus 478 -~~~G~d~~~g~~~dm~~~gI~dp~~vk~~al~~A~e~a~~iL~iD~ii~~~ 528 (528)
T 3p9d_D 478 -LNDGISVRRSGTTNTYEEHILQPVLVSTSAITLASECVKSILRIDDIAFSR 528 (528)
T ss_dssp -CCCCCCSSSSSCCCHHHHCCEEEHHHHHHHHHHHHHHHHHHHHCSCCCBCC
T ss_pred -CccceecCCCCccchHhccCeecHHHHHHHHHHHHHHHHHHHhhhHheecC
Confidence 789999999999999999999999999999999999999999999999763
No 14
>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=100.00 E-value=7.7e-111 Score=911.05 Aligned_cols=503 Identities=35% Similarity=0.576 Sum_probs=485.4
Q ss_pred ccccccHHHHHHHHHHHHHHHHHhhhccCCCCCceeeeCCCCCeEEecCHHHHhccccccChHHHHHHHHHHhcccccCC
Q 008527 16 TDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGD 95 (562)
Q Consensus 16 ~~~~~g~~~~~~n~~~~~~l~~iv~sslGP~G~~kmI~~~~g~~~iTnDG~tIl~~l~~~hP~akll~~~~~~~~~~~GD 95 (562)
.++.+|.+++.+|+.||+.|+++|+|||||+||+|||+++.|+++|||||+|||++|+++||+|||++++|++||+++||
T Consensus 4 ~~~~~g~~~~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~akll~~~a~~qd~~~GD 83 (518)
T 3iyg_D 4 QDRDKPAQIRFSNISAAKAVADAIRTSLGPKGMDKMIQDGKGDVTITNDGATILKQMQVLHPAARMLVELSKAQDIEAGD 83 (518)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHhccCCCCCceeeeCCCCCeEEECCHHHHHHHcccchHHHHHHHHHHHHhhhhhCC
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHhHHCCCChhhHHHHHHHHHHHHHHHHHhhceeccCCChHHHHHHHHHHHHHhhccCccCchh
Q 008527 96 GTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEK 175 (562)
Q Consensus 96 GTtt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~v~~~~~~~~~~~l~~ia~tsl~sk~~~~~~ 175 (562)
||||++|||++||+++.+++++|+||+.|++||++|++.+++.|+++++|++..+ ++.|.++|+||++||+.++|+
T Consensus 84 GTTtvvVLA~~Ll~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~~----~~~l~~vA~tsl~sK~~~~~~ 159 (518)
T 3iyg_D 84 GTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGIEILTDMSRPVELSD----RETLLNSAATSLNSKVVSQYS 159 (518)
T ss_pred CceeHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHheeeCCCCC----hHHHHHHhHhhhccccchhhH
Confidence 9999999999999999999999999999999999999999999999999987544 689999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCC---C--CCcceeEEEecCCCcccceeEEEEEEecccCCCcccCCcceecCceEEEeecccccc
Q 008527 176 EFFASMVVDAVGAIGDG---D--RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNIELELK 250 (562)
Q Consensus 176 ~~ls~li~~Av~~v~~~---~--d~~~I~i~~i~gg~~~ds~li~Giv~~~~~~~~~~~~~~~~l~n~kIll~~~~Le~~ 250 (562)
++|++++++|+.++++. . |.++|+|+++.||+.+||++++|++|+++|.| + ||++++||||++++++||++
T Consensus 160 ~~i~~livdAv~~V~~~~~~~~~d~~~I~V~k~~Gg~~~ds~lv~G~~~dk~~~~-~---mp~~i~n~kIlll~~~Le~~ 235 (518)
T 3iyg_D 160 SLLSPMSVDAVMKVIDPATATSVDLRDIKIVKKLGGTIDDCELVEGLVLTQKVAN-S---GITRVEKAKIGLIQFCLSAP 235 (518)
T ss_pred HHHHHHHHHHHHHhhccccCCCcccceEEEEEcCCCChhhheEeccEEEeccccc-C---CCccccCceEEEEEeecccc
Confidence 99999999999999852 2 67889999999999999999999999999987 3 68999999999999999999
Q ss_pred ccccCceEEecCHHhHHHHHHHHHHHHHHHHHHHHHcCCeEEEE-----cCcccHHHHHHHHhcCccccCCCChHHHHHH
Q 008527 251 SEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLS-----RLAIGDLATQYFADRDIFCAGRVAEEDLLRV 325 (562)
Q Consensus 251 ~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lIi~-----~~~v~~~al~~l~~~~I~~v~~v~~~~Le~I 325 (562)
++++++++.++++++++++.++|+++++++++++++.|++||++ +++|++.+++||.++||++++++++.+|+||
T Consensus 236 k~~~~~~i~is~~~~~~~~~~~E~~~l~~~le~I~~~g~~lvi~~k~i~~~~I~~~Al~~L~~~~I~av~~~~~~~le~i 315 (518)
T 3iyg_D 236 KTDMDNQIVVSDYVQMDRVLREERAYILNLVKQIKKTGCNVLLIQKSILRDALSDLALHFLNKMKIMVVKDIEREDIEFI 315 (518)
T ss_pred ccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeccccccCcCHHHHHHHHHcCcEEEecCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999 8999999999999999999999999999999
Q ss_pred HHHhCCeEecccCCCCCCcccccceEEEEEECC-eEEEEEEcCCC-CceEEEEeecCCHHHHHHHHHHHHHHHHHHHHHH
Q 008527 326 AAATGGTVQTSVNNVVDEVLGTCEHFEERQVGN-ERFNIFSGCPS-GRTATIVLRGGADQFIEEAERSLHDAIMIVRRAT 403 (562)
Q Consensus 326 a~~TGa~ii~sl~~l~~~~lG~~~~v~~~~ig~-~~~~~~~g~~~-~~~~TIll~G~t~~~l~e~k~~i~dal~~~~~~l 403 (562)
|++|||++++++++++++++|+|+.|++.++++ ++|++|+||++ ++.|||+|||+|+.+++|.||+++||++++|+++
T Consensus 316 a~~tGa~ii~~l~~l~~~~LG~a~~v~~~~~g~~~~~~~~~g~~~~~~~~tI~lrG~te~~l~E~kr~l~DAl~~~r~av 395 (518)
T 3iyg_D 316 CKTIGTKPVAHVDQFTADMLGSAELAEEVSLNGSGKLIKITGCASPGKTVTIVVRGSNKLVIEEAERSIHDALCVIRCLV 395 (518)
T ss_pred HHHhCCEEecccccCCHHHCCcCcEEEEEEeCCCceEEEEECCCCCCceEEEEECCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999 89999999988 8999999999999999999999999999999999
Q ss_pred hCCceeccCCccHHHHHHHHHHHhhhccchHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHhccCCCCCCCceeE
Q 008527 404 KNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGV 483 (562)
Q Consensus 404 ~~~~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~~~~Gi 483 (562)
++|++|||||++|++++.+|++++.+.++++|+++++|++||+.||++|++|||+|+.+++.+|++.|.. ++ .++||
T Consensus 396 ~~~~iVpGGGa~e~~~~~~L~~~~~~~~g~~q~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~--~~-~~~G~ 472 (518)
T 3iyg_D 396 KKRALIAGGGAPEIELALRLTEYSRTLSGMESYCIRAFADAMEVIPSTLAENAGLNPISTVTELRNRHAQ--GE-KTTGI 472 (518)
T ss_pred hCCCEeecCcHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc--cC-CceeE
Confidence 9999999999999999999999998899999999999999999999999999999999999999999976 55 78999
Q ss_pred ecCCCCccccccCCcccchHHHHHHHHHHHHHHHHHHchhHhhcCC
Q 008527 484 DINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNP 529 (562)
Q Consensus 484 d~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~iI~~~ 529 (562)
|+.+|++.||++.|||||+.||+++|++|+|+|++|||||++|+.+
T Consensus 473 d~~~g~~~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~iD~ii~~~ 518 (518)
T 3iyg_D 473 NVRKGGISNILEELVVQPLLVSVSALTLATETVRSILKIDDVVNTR 518 (518)
T ss_pred eCCCCcccchhhccCEEcHHHHHHHHHHHHHHHHHHHhhcceEecC
Confidence 9999999999999999999999999999999999999999999763
No 15
>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 4d8q_C* 4d8r_c* 2bbm_B 2bbn_B
Probab=100.00 E-value=2.9e-112 Score=927.89 Aligned_cols=517 Identities=31% Similarity=0.569 Sum_probs=488.5
Q ss_pred CchhHhhccccccccccHHHHHHHHHHHHHHHHHhhhccCCCCCceeeeCCCCCeEEecCHHHHhccccccChHHHHHHH
Q 008527 5 MQPQIILLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVD 84 (562)
Q Consensus 5 ~~~~~~~~~~~~~~~~g~~~~~~n~~~~~~l~~iv~sslGP~G~~kmI~~~~g~~~iTnDG~tIl~~l~~~hP~akll~~ 84 (562)
||+|+.+|+++.++.+|.+++.+|+.||+.|+++|++||||+||+|||+++.|+|+|||||+|||++|+++||+|||+++
T Consensus 1 ~~~~~~~~~~~~~~~~g~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~ITnDG~TIlk~i~~~hP~Akll~e 80 (590)
T 3p9d_C 1 MQAPVVFMNASQERTTGRQAQISNITAAKAVADVIRTCLGPKAMLKMLLDPMGGLVLTNDGHAILREIDVAHPAAKSMLE 80 (590)
T ss_dssp -----CCSCTTCCBCTTHHHHHTTHHHHHHHHHHSTTTCSSSCCCCEEECTTTCCBCCCCHHHHHHHSCCCCHHHHTHHH
T ss_pred CCCCeEeecCCcchhhHHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEECCCCCeEEECCHHHHHHHhhCCCHHHHHHHH
Confidence 47788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcccccCCchhHHHHHHHHHHHHHHHh-HHCCCChhhHHHHHHHHHHHHHHHHHhhceeccCCChHHHHHHHHHHHH
Q 008527 85 IAKSQDSEVGDGTTTVVLLAAEFLREAKPF-IEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAA 163 (562)
Q Consensus 85 ~~~~~~~~~GDGTtt~vvLa~~Ll~~~~~l-i~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~v~~~~~~~~~~~l~~ia~ 163 (562)
+|++||+++||||||++|||++||+++.++ +++|+||+.|++||++|++.+++.|+++++|++..+ ++.|.++|+
T Consensus 81 ~a~~qd~e~GDGTTtvvVLA~eLL~~a~~l~l~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~~----~e~L~~vA~ 156 (590)
T 3p9d_C 81 LSRTQDEEVGDGTTTVIILAGEILAQCAPYLIEKNIHPVIIIQALKKALTDALEVIKQVSKPVDVEN----DAAMKKLIQ 156 (590)
T ss_dssp HTTTHHHHCSSCHHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHHHCCTTTTCC----THHHHHHHT
T ss_pred HHHhhhhhhCCCccchHHHHHHHHhhhHHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHhhccccCC----HHHHHHHHH
Confidence 999999999999999999999999999999 999999999999999999999999999999988654 579999999
Q ss_pred HhhccCccCchhHHHHHHHHHHHHHhCCCC------------CC-cceeEEEecCCCcccceeEEEEEEecccCCCcccC
Q 008527 164 TTLSSKLIGGEKEFFASMVVDAVGAIGDGD------------RL-NMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQ 230 (562)
Q Consensus 164 tsl~sk~~~~~~~~ls~li~~Av~~v~~~~------------d~-~~I~i~~i~gg~~~ds~li~Giv~~~~~~~~~~~~ 230 (562)
|+++||+.++|+++|++++++|+.+++++. |. ++|+|+++.||+++||++++|++|++++.++.
T Consensus 157 tslsSK~~~~~~~~i~~livdAv~~V~~~~~~~~~~~~~~~vDl~~~I~I~ki~Ggs~~ds~lv~Gmvfdk~~~~~~--- 233 (590)
T 3p9d_C 157 ASIGTKYVIHWSEKMCELALDAVKTVRKDLGQTVEGEPNFEIDIKRYVRVEKIPGGDVLDSRVLKGVLLNKDVVHPK--- 233 (590)
T ss_dssp TTSTTSTTGGGHHHHHHHHHHHHTTSTTCC-----------CCCSSSSCEEEESSCCGGGCBCCSSEEECCCCSCTT---
T ss_pred HHHhcccccccHHHHHHHHHHHHHHhcccccCccccccccccchhhceEEEEecCCCcccceeeeEEEEecccCCCC---
Confidence 999999999999999999999999998641 22 37999999999999999999999999998874
Q ss_pred CcceecCceEEEeeccccccccccCceEEecCHHhHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcccHHHHHHHHhcC
Q 008527 231 QPKKFLNPKILLLNIELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRD 310 (562)
Q Consensus 231 ~~~~l~n~kIll~~~~Le~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lIi~~~~v~~~al~~l~~~~ 310 (562)
||++++||||++++++|+++++++++++.++++++++++.+.|+++++++++++++.|++|||++++|++++++||.++|
T Consensus 234 m~~~~en~kIll~d~~Le~~K~e~~~~v~Is~~~~l~~il~~E~~~l~~~vekI~~~g~~vII~e~~I~d~Al~~L~k~~ 313 (590)
T 3p9d_C 234 MSRHIENPRVVLLDCPLEYKKGESQTNIEIEKEEDWNRILQIEEEQVQLMCEQILAVRPTLVITEKGVSDLAQHYLLKGG 313 (590)
T ss_dssp SCSCEESCCEECCCCCCSCCCCTTTEECCBCSTTHHHHHHHHHHHHHHHHHHHHHTTCCSEECCSSCCCTHHHHHHHHTT
T ss_pred CcceeeeeEEEEEcccccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCcCHHHHHHHHhcc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCChHHHHHHHHHhCCeEecccCCCCCCcccc-cceEEEEEECCeEEEEEEcCCCCce-----------------
Q 008527 311 IFCAGRVAEEDLLRVAAATGGTVQTSVNNVVDEVLGT-CEHFEERQVGNERFNIFSGCPSGRT----------------- 372 (562)
Q Consensus 311 I~~v~~v~~~~Le~Ia~~TGa~ii~sl~~l~~~~lG~-~~~v~~~~ig~~~~~~~~g~~~~~~----------------- 372 (562)
|++++++++.+|+|||++|||++++++++++.+++|+ |+.|++.+++++++++|+||.++..
T Consensus 314 I~av~~~~k~~le~ia~~TGa~iis~l~~~~~~~LG~~a~~v~~~~ig~d~~~~i~g~~~~~~~~~~~~~~~~~~~~k~~ 393 (590)
T 3p9d_C 314 CSVLRRVKKSDNNRIARVTGATIVNRVEDLKESDVGTNCGLFKVEMIGDEYFSFLDNCKEPGSGSGWSHPQFEKGSGKRR 393 (590)
T ss_dssp CCCCCCCCHHHHHHHHHHHTCCCCSCSTTCCTTSCBCCCSEEECCEETTEECEEECC-----------------------
T ss_pred ceeeccCCHHHHHHHHHHhCCceeecccCCCHHHhCCcCCEEEEEEEcCcEEEEEeCCCCccccccccccccccccchhh
Confidence 9999999999999999999999999999999999999 9999999999999999999987766
Q ss_pred ---------------------------------------EEEEeecCCHHHHHHHHHHHHHHHHHHHHHHhCCceeccCC
Q 008527 373 ---------------------------------------ATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGG 413 (562)
Q Consensus 373 ---------------------------------------~TIll~G~t~~~l~e~k~~i~dal~~~~~~l~~~~vvpGGG 413 (562)
|||+|||+|+.+++|.||+++|||+++|+++++|++|||||
T Consensus 394 ~~~~~~~~~i~~r~~~i~~~~~~~~~~~~~~~~~l~ggv~tI~lrg~te~~l~E~kr~i~DAl~a~r~av~~~~iVpGGG 473 (590)
T 3p9d_C 394 WKKNFIAVSAANRFKKISSSGALGSGHHHHHHHHGSGKACTIMLRGGSKDILNEIDRNLQDAMAVARNVMLSPSLSPGGG 473 (590)
T ss_dssp ----------------------------------CCCSCCCEEEECSSTTTHHHHHHHHHHHHHHHHHHHHCCCEECTTT
T ss_pred hhcchhhHHHHHHHHHHHHHHhccCCHHHHHHHhhcCCeeEEEEcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEeCcc
Confidence 99999999999999999999999999999999988999999
Q ss_pred ccHHHHHHHHHHHhhhccchHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHhccCCCCCCCceeEecCCCCcccc
Q 008527 414 AIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADS 493 (562)
Q Consensus 414 ~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~~~~Gid~~~g~~~d~ 493 (562)
++|++++.+|++++...++++|+++++|++||+.||++|++|||+|+.+++.+|++.|.. ++ .++|||+.+|++.||
T Consensus 474 a~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~vv~~l~~~h~~--~~-~~~G~d~~~g~~~dm 550 (590)
T 3p9d_C 474 ATEMAVSVKLAEKAKQLEGIQQWPYQAVADAMECIPRTLIQNAGGDPIRLLSQLRAKHAQ--GN-FTTGIDGDKGKIVDM 550 (590)
T ss_dssp HHHHHHHHHHHHHHHHSCSTTHHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHTT--SC-TTCBCCTTSSSCBCT
T ss_pred HHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc--CC-CCEeEeCCCCeEeeh
Confidence 999999999999998899999999999999999999999999999999999999999876 66 789999999999999
Q ss_pred ccCCcccchHHHHHHHHHHHHHHHHHHchhHhhcCCCc
Q 008527 494 FANFVWEPAVVKINAINAATEAACLILSVDETVKNPKV 531 (562)
Q Consensus 494 ~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~iI~~~~~ 531 (562)
++.|||||+.||+++|++|+|+|++|||||++|...|+
T Consensus 551 ~~~gI~dp~~vk~~al~~A~e~a~~iL~id~ii~~~~~ 588 (590)
T 3p9d_C 551 VSYGIWEPEVIKQQSVKTAIESACLLLRVDDIVSGVRK 588 (590)
T ss_dssp TTTTCCEEHHHHHHHHHHHHHHHHHTTSEEEEECCCC-
T ss_pred HHcCCeEcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999987653
No 16
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=100.00 E-value=6.4e-111 Score=910.56 Aligned_cols=501 Identities=27% Similarity=0.469 Sum_probs=483.5
Q ss_pred ccccccHHHHHHHHHHHHHHHHHhhhccCCCCCceeeeCCCCCeEEecCHHHHhccccccChHHHHHHHHHHhcccccCC
Q 008527 16 TDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGD 95 (562)
Q Consensus 16 ~~~~~g~~~~~~n~~~~~~l~~iv~sslGP~G~~kmI~~~~g~~~iTnDG~tIl~~l~~~hP~akll~~~~~~~~~~~GD 95 (562)
.+..+|.+++.+|+.||+.|+++|+|||||+||+|||+++.|+++|||||+|||++|+++||+|||++++|++||+++||
T Consensus 3 ~~~~~~~~a~~~ni~a~~~la~~vkttlGPkG~~kml~~~~g~~~iTnDG~tIlk~i~v~hp~akll~~~a~~qd~e~GD 82 (517)
T 3iyg_Z 3 AEVARAQAALAVNISAARGLQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNVLLHEMQIQHPTASLIAKVATAQDDITGD 82 (517)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEECCCCCEEEECCHHHHHHHccCcCHHHHHHHHHHHHHHHHhCC
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHhHHCCCChhhHHHHHHHHHHHHHHHHHhhceeccCCChHHHHHHHHHHHHHhhccCccCchh
Q 008527 96 GTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEK 175 (562)
Q Consensus 96 GTtt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~v~~~~~~~~~~~l~~ia~tsl~sk~~~~~~ 175 (562)
||||++||+++||+++.+++++|+||+.|++||++|++.+++.|+++++|++. + ++.|.++|+|+++||+.+.+.
T Consensus 83 GTTtvvvLa~~Ll~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~-~----~~~L~~va~tsl~sKi~~~~~ 157 (517)
T 3iyg_Z 83 GTTSNVLIIGELLKQADLYISEGLHPRIITEGFEAAKEKALQFLEQVKVSKEM-D----RETLIDVARTSLRTKVHAELA 157 (517)
T ss_pred CceeHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhhCcCCCC-C----HHHHHHHHHHHhccccchhHH
Confidence 99999999999999999999999999999999999999999999999998864 3 689999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCC---CCcceeEEEecCCCcccceeEEEEEEecccCCCcccCCcceecCceEEEeecccccccc
Q 008527 176 EFFASMVVDAVGAIGDGD---RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNIELELKSE 252 (562)
Q Consensus 176 ~~ls~li~~Av~~v~~~~---d~~~I~i~~i~gg~~~ds~li~Giv~~~~~~~~~~~~~~~~l~n~kIll~~~~Le~~~~ 252 (562)
++|+++++||+..+.++. |.++|+|+++.||+.+||++++|++|++++.||+ ||++++||+|++++++|+++++
T Consensus 158 d~la~l~vdaV~~V~~~~~~~dl~~I~I~k~~Gg~~~ds~lv~G~v~dk~~~~p~---m~~~ien~kIll~~~~le~~k~ 234 (517)
T 3iyg_Z 158 DVLTEAVVDSILAIKKQDEPIDLFMVEIMEMKHKSETDTSLIRGLVLDHGARHPD---MKKRVEDAYILTCNVSLEYEKT 234 (517)
T ss_pred HHHHHHHHHHhheeccCCCcCChhHheeeeecCCCccccceEeeEEEeccCCCCC---ccccccCCeEEEeccccccccc
Confidence 999999999999887542 7889999999999999999999999999999998 5899999999999999999999
Q ss_pred ccCceEEecCHHhHHHHHHHHHHHHHHHHHHHHHcCCe---------EEEEcCcccHHHHHHHHhcCccccCCCChHHHH
Q 008527 253 KENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAK---------VVLSRLAIGDLATQYFADRDIFCAGRVAEEDLL 323 (562)
Q Consensus 253 ~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~---------lIi~~~~v~~~al~~l~~~~I~~v~~v~~~~Le 323 (562)
++++++.++++++++++.++|+++++..+++|...+++ ||+++++|++.+++||.++||++++++++++|+
T Consensus 235 e~~~~~~i~~~~~l~~~~~~E~~~i~~~v~~I~~~~~~v~~~~~~~lvIi~~~~I~d~al~~L~~~gI~~v~~v~~~~le 314 (517)
T 3iyg_Z 235 EVNSGFFYKSAEEREKLVKAERKFIEDRVKKIIELKKKVCGDSDKGFVVINQKGIDPFSLDALAKEGIIALRRAKRRNME 314 (517)
T ss_pred ccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCceEEEecccCCHHHHHHHHHCCCEEEEecCHHHHH
Confidence 99999999999999999999999999999999988877 588999999999999999999999999999999
Q ss_pred HHHHHhCCeEecccCCCCCCc-ccccceEEEEEECCeEEEEEEcCCCCceEEEEeecCCHHHHHHHHHHHHHHHHHHHHH
Q 008527 324 RVAAATGGTVQTSVNNVVDEV-LGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRA 402 (562)
Q Consensus 324 ~Ia~~TGa~ii~sl~~l~~~~-lG~~~~v~~~~ig~~~~~~~~g~~~~~~~TIll~G~t~~~l~e~k~~i~dal~~~~~~ 402 (562)
|||++|||+++++++++++++ +|+|+ |++.++|+++|++|+||++++.|||+|||+|+.+++|.||+++||++++|++
T Consensus 315 ria~~tGa~iv~~l~~l~~~~~LG~a~-v~e~~ig~~~~~~~~g~~~~~~~TI~lrG~t~~~l~E~kr~l~DAl~~~r~a 393 (517)
T 3iyg_Z 315 RLTLACGGIALNSLDDLNPDCLLGHAG-VYEYTLGEEKFTFIEKCNNPRSVTLLIKGPNKHTLTQIKDAIRDGLRAVKNA 393 (517)
T ss_pred HHHHHhCCEEecchhhCcccccCCcce-EEEEEEcCceEEEEeCCCCchhheeeecCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 99999 9999999999999999999999999999999999999999999999999999
Q ss_pred HhCCceeccCCccHHHHHHHHHHHhhhccchHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHhccCCCCCCCcee
Q 008527 403 TKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYG 482 (562)
Q Consensus 403 l~~~~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~~~~G 482 (562)
+++|++|||||++|++++.+|++++.+.++++|+++++|++||+.+|++|++|||+|+.+++.+|++.|.. ++ .++|
T Consensus 394 v~~~~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~iP~~La~NaG~d~~~~v~~l~~~h~~--~~-~~~G 470 (517)
T 3iyg_Z 394 IDDGCVVPGAGAVEVAMAEALVKYKPSVKGRAQLGVQAFADALLIIPKVLAQNSGFDLQETLVKVQAEHSE--SG-QLVG 470 (517)
T ss_pred HhcceEecCccHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc--CC-CcEE
Confidence 99999999999999999999999998889999999999999999999999999999999999999999975 55 7899
Q ss_pred EecCCCCccccccCCcccchHHHHHHHHHHHHHHHHHHchhHhhcC
Q 008527 483 VDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKN 528 (562)
Q Consensus 483 id~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~iI~~ 528 (562)
||+.+|++.||++.|||||+.||+++|++|+|+|++|||||++|..
T Consensus 471 ~d~~~g~~~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~iD~ii~~ 516 (517)
T 3iyg_Z 471 VDLNTGEPMVAAEAGIWDNYCVKKQLLHSCTVIATNILLVDEIMRA 516 (517)
T ss_pred EeCCCCcccchhhccCeecHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999999999975
No 17
>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* 4d8q_E* 4d8r_e*
Probab=100.00 E-value=1.6e-111 Score=922.92 Aligned_cols=520 Identities=32% Similarity=0.508 Sum_probs=489.7
Q ss_pred hHhhcccc--ccccccHHHHHHHHHHHHHHHHHhhhccCCCCCceeeeCCCCCeEEecCHHHHhccccccChHHHHHHHH
Q 008527 8 QIILLKEG--TDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDI 85 (562)
Q Consensus 8 ~~~~~~~~--~~~~~g~~~~~~n~~~~~~l~~iv~sslGP~G~~kmI~~~~g~~~iTnDG~tIl~~l~~~hP~akll~~~ 85 (562)
|..+|+++ .++.+|.++|.+|+.||+.|+++|+|||||+||+|||+++.|+++|||||+|||++|+++||+|||++++
T Consensus 28 ~~~~~~~~~~~~~~~g~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~Akll~e~ 107 (562)
T 3p9d_E 28 PFIIVKDQGNKKRQHGLEAKKSHILAARSVASIIKTSLGPRGLDKILISPDGEITITNDGATILSQMELDNEIAKLLVQL 107 (562)
T ss_dssp --CCCSSBCCCSCSHHHHHHHHHHHHHHHHHHHTTTSSSTTCCEEEEECSSSCEEEESCHHHHHHHSCCCSHHHHHHHHH
T ss_pred CeEEeccCCcceecchHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCEEEECCHHHHHHHccCCCHHHHHHHHH
Confidence 44456665 3777999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcccccCCchhHHHHHHHHHHHHHHHhHHCCCChhhHHHHHHHHHHHHHHHHHhhceeccCCChHHHHHHHHHHHHHh
Q 008527 86 AKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATT 165 (562)
Q Consensus 86 ~~~~~~~~GDGTtt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~v~~~~~~~~~~~l~~ia~ts 165 (562)
|++||+++||||||++|||++||+++.+++++|+||+.|++||++|++.+++.|+++++|++..+...+++.|.++|+||
T Consensus 108 a~~qd~e~GDGTTtvvVLA~~LL~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~~~~~~~e~L~~vA~tS 187 (562)
T 3p9d_E 108 SKSQDDEIGDGTTGVVVLASALLDQALELIQKGIHPIKIANGFDEAAKLAISKLEETCDDISASNDELFRDFLLRAAKTS 187 (562)
T ss_dssp HHHHHHHTSSCTTHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHTTTTTSSSSBCCCSSCHHHHHHHHHHH
T ss_pred HHHHHhhcCCCcccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccCcCCCcchhhHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999987642111247899999999
Q ss_pred hccCccCchhHHHHHHHHHHHHHhCCC---C-CCcceeEEEecCCCcccceeEEEEEEecccCCCcccCCccee------
Q 008527 166 LSSKLIGGEKEFFASMVVDAVGAIGDG---D-RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKF------ 235 (562)
Q Consensus 166 l~sk~~~~~~~~ls~li~~Av~~v~~~---~-d~~~I~i~~i~gg~~~ds~li~Giv~~~~~~~~~~~~~~~~l------ 235 (562)
++||+++.+.++|+++++||+..+.+. + |.++|+|+++.|++++||++++|++|+++|.|||| |++.
T Consensus 188 l~sK~i~~~~d~la~l~vdAV~~V~~~~~~~~d~~~I~I~k~~Ggs~~ds~lveGmv~dk~~~sp~m---~~~~~~~~~~ 264 (562)
T 3p9d_E 188 LGSKIVSKDHDRFAEMAVEAVINVMDKDRKDVDFDLIKMQGRVGGSISDSKLINGVILDKDFSHPQM---PKCVLPKEGS 264 (562)
T ss_dssp HSSSTTTTTHHHHHHHHHHHHHTSSTTTCSCCCCCCCEEEEESSSCGGGCEEESSEEESSCCCTTSC---CC-----TTC
T ss_pred cCCchhHHHHHHHHHHHHHHheeecccccCCCCcccEEEEEecCCChhhhceeeeEEEecCCCCCCc---Cccccccccc
Confidence 999999999999999999999998753 2 78999999999999999999999999999999986 6667
Q ss_pred cCceEEEeeccccccccccCceEEecCHHhHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcccHHHHHHHHhcCccccC
Q 008527 236 LNPKILLLNIELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAG 315 (562)
Q Consensus 236 ~n~kIll~~~~Le~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lIi~~~~v~~~al~~l~~~~I~~v~ 315 (562)
+|++|+++++++++.+++.++++.++++++++++.++|+++++++++++++.|++|||++++|++.+++||.++||++++
T Consensus 265 ~~~kIall~~~le~~k~~~~~~~~Iss~~~~~~~~~~E~~~l~~~lekI~~~g~~vvI~~~~I~~~Al~~L~~~~I~~v~ 344 (562)
T 3p9d_E 265 DGVKLAILTCPFEPPKPKTKHKLDISSVEEYQKLQTYEQDKFKEMIDDVKKAGADVVICQWGFDDEANHLLLQNDLPAVR 344 (562)
T ss_dssp SSCEECEEESCCSSCCCSSCCCCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHTCSCCEECSSCCSHHHHHHHTTTCCCEE
T ss_pred ccceEEEecccccccccccCceEEECCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHCCCEEEe
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHhCCeEecccCCCCCCcccccceEEEEEECC--eEEEEEEcCCCCceEEEEeecCCHHHHHHHHHHHH
Q 008527 316 RVAEEDLLRVAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGN--ERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLH 393 (562)
Q Consensus 316 ~v~~~~Le~Ia~~TGa~ii~sl~~l~~~~lG~~~~v~~~~ig~--~~~~~~~g~~~~~~~TIll~G~t~~~l~e~k~~i~ 393 (562)
++++++|+|||++|||++++++++++++++|+|+.|++.++|+ +++++|+||++++.|||+|||+|+.+++|.||+++
T Consensus 345 ~v~k~~le~ia~~TGa~iis~l~~l~~~~LG~a~~v~~~~ig~~~~~~~~i~g~~~~~~~TIllrG~te~~l~E~kr~i~ 424 (562)
T 3p9d_E 345 WVGGQELEHIAISTNGRIVPRFQDLSKDKLGTCSRIYEQEFGTTKDRMLIIEQSKETKTVTCFVRGSNKMIVDEAERALH 424 (562)
T ss_dssp CCCTTTHHHHHHHHCCCEEESSSCCCTTSCEECSCEEEECCSSSSCCEEEECCCSCCSCCEEEEECTTTTTHHHHTHHHH
T ss_pred ccCHHHHHHHHHHhCCEEEeccccCCHHHCCcceEEEEEEeccCCceEEEEecCCCCCeEEEEEeCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999985 89999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCceeccCCccHHHHHHHHHHHhhhccchHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHhccC
Q 008527 394 DAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHAL 473 (562)
Q Consensus 394 dal~~~~~~l~~~~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~~~~~l~~~~~~ 473 (562)
|||+++|+++++|++|||||++|++++++|++++.+.++++|+++++|++||+.||++|++|||+|+.+++.+|++.|..
T Consensus 425 DAL~~~r~av~~g~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~vv~~l~~~h~~ 504 (562)
T 3p9d_E 425 DSLCVVRNLVKDSRVVYGGGAAEVTMSLAVSEEADKQRGIDQYAFRGFAQALDTIPMTLAENSGLDPIGTLSTLKSKQLK 504 (562)
T ss_dssp HHHHHHHHHHHSCCEEETTTHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHTHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcCCCCcHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999998889999999999999999999999999999999999999998864
Q ss_pred CCCCCCceeEecCCCCccccccCCcccchHHHHHHHHHHHHHHHHHHchhHhhcCCCcC
Q 008527 474 PTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPKVV 532 (562)
Q Consensus 474 ~~~~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~iI~~~~~~ 532 (562)
. ++ .++|||+.+|++.||++.|||||+.||+++|++|+|+|++|||||++|..++++
T Consensus 505 ~-~~-~~~G~d~~~g~~~dm~~~gI~dp~~vk~~al~~A~e~a~~iL~iD~ii~~~~~~ 561 (562)
T 3p9d_E 505 E-KI-SNIGVDCLGYGSNDMKELFVVDPFIGKKQQILLATQLCRMILKIDNVIISGKDE 561 (562)
T ss_dssp T-TT-SSBCCBTTTTBCCBTTTTTCEEEHHHHHHHHHHHHHHHHHHHTEEEEEECCC--
T ss_pred c-CC-CceeEecCCCcccchHhccCEEcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Confidence 1 33 789999999999999999999999999999999999999999999999987654
No 18
>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* 4d8q_B* 4d8r_b*
Probab=100.00 E-value=1.8e-111 Score=918.67 Aligned_cols=517 Identities=36% Similarity=0.548 Sum_probs=491.8
Q ss_pred hhccccccccccHHHHHHHHHHHHHHHHHhhhccCCCCCceeeeC-CCCCeEEecCHHHHhccccccChHHHHHHHHHHh
Q 008527 10 ILLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHD-DKGTVTISNDGATIMKLLDIVHPAAKILVDIAKS 88 (562)
Q Consensus 10 ~~~~~~~~~~~g~~~~~~n~~~~~~l~~iv~sslGP~G~~kmI~~-~~g~~~iTnDG~tIl~~l~~~hP~akll~~~~~~ 88 (562)
.+|+++.++.+|.++|.+|+.||+.|+++|+|||||+||+|||++ +.|+++|||||+|||++|+++||+|||++++|++
T Consensus 4 ~~l~~~~~~~~g~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~~G~~~iTnDG~tIlk~i~~~hP~Akll~e~a~~ 83 (527)
T 3p9d_B 4 QIFGDQVTEERAENARLSAFVGAIAVGDLVKSTLGPKGMDKLLQSASSNTCMVTNDGATILKSIPLDNPAAKVLVNISKV 83 (527)
T ss_dssp CSSCSCEEEEESHHHHHHHHHHHHHHHHHHHSCSSSSCCEEEEECTTTCCEECCCCHHHHHHTCCCCCHHHHHHHHHHHH
T ss_pred ehhcCcchhhhhHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEecCCCCeEEeCCHHHHHHHhccCCHHHHHHHHHHHH
Confidence 468999999999999999999999999999999999999999999 8999999999999999999999999999999999
Q ss_pred cccccCCchhHHHHHHHHHHHHHHHhHHC-CCChhhHHHHHHHHHHHHHHHHHhhceeccCCChHHHHHHHHHHHHHhhc
Q 008527 89 QDSEVGDGTTTVVLLAAEFLREAKPFIED-GVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLS 167 (562)
Q Consensus 89 ~~~~~GDGTtt~vvLa~~Ll~~~~~li~~-gi~p~~I~~g~~~a~~~~l~~L~~~s~~v~~~~~~~~~~~l~~ia~tsl~ 167 (562)
||+++||||||++|||++||+++.+++++ |+||+.|++||++|++.+++.|++++++++.. +..+++.|.++|+||++
T Consensus 84 qd~~~GDGTTtavVLA~~Ll~ea~~lv~~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~-~~~~~~~l~~vA~tSl~ 162 (527)
T 3p9d_B 84 QDDEVGDGTTSVTVLSAELLREAEKLIDQSKIHPQTIIEGYRLASAAALDALTKAAVDNSHD-KTMFREDLIHIAKTTLS 162 (527)
T ss_dssp HHHHTCSCTTTTTHHHHHHHHHHHHHTC---CCHHHHHHHHHHHHHHHHHHHHHTCBCCCCC-HHHHHHHHHHHHHHHHT
T ss_pred hHhhhCCcHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhCccCCCc-chhhHHHHHHHHHhccc
Confidence 99999999999999999999999999999 99999999999999999999999999998753 22346899999999999
Q ss_pred cCccCchhHHHHHHHHHHHHHhCCCCCCcceeEEEecCCCcccceeEEEEEEecccCCCcccCCcceecCceEEEeeccc
Q 008527 168 SKLIGGEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNIEL 247 (562)
Q Consensus 168 sk~~~~~~~~ls~li~~Av~~v~~~~d~~~I~i~~i~gg~~~ds~li~Giv~~~~~~~~~~~~~~~~l~n~kIll~~~~L 247 (562)
||+.++|+++|++|+++|+.+++++.|.++|+|+++.||+.+||++++|++|+++|.||| |++++||||++++++|
T Consensus 163 sK~~~~~~~~i~~li~dAv~~V~~~~~~~~I~V~k~~gg~~~ds~lv~G~~~dk~~~~~~----p~~~~n~kIlll~~~l 238 (527)
T 3p9d_B 163 SKILSQDKDHFAELATNAILRLKGSTNLEHIQIIKILGGKLSDSFLDEGFILAKKFGNNQ----PKRIENAKILIANTTL 238 (527)
T ss_dssp TSGGGGGHHHHHHHHHHHHHTTCTTCCTTSSCCCBCCCSSSSCCCEESSCCCSCCCSSSC----CSCCSSCEEEEECSCS
T ss_pred cCcccchHHHHHHHHHHHHHHhcccCCcceEEEEEcCCCCccccEEEEeEEEecccCCCC----CeeeecceEEEecccc
Confidence 999999999999999999999987546788999999999999999999999999999986 6789999999999999
Q ss_pred cccccc-cCceEEecCHHhHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcccHHHHHHHHhcCccccCCCChHHHHHHH
Q 008527 248 ELKSEK-ENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVA 326 (562)
Q Consensus 248 e~~~~~-~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lIi~~~~v~~~al~~l~~~~I~~v~~v~~~~Le~Ia 326 (562)
++++++ +++++.+++++++.++.++|+++++++++++++.|++||+++++|++.+++||.++||++++++++.+|+|||
T Consensus 239 e~~k~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~l~~I~~~g~~vvi~~~~I~~~al~~L~~~~i~av~~~~~~dle~ia 318 (527)
T 3p9d_B 239 DTDKVKIFGTKFKVDSTAKLAQLEKAEREKMKNKIAKISKFGINTFINRQLIYDYPEQLFTDLGINSIEHADFEGVERLA 318 (527)
T ss_dssp SCCCCSSCCCBCCCCHHHHHHHHHHHHHHHHHHHHHHHTTTCCBEEESSCCCTTTHHHHHHHTCBCCCCCCHHHHHHHHH
T ss_pred ccccccccCceEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHCCCEEEecCCHHHHHHHH
Confidence 999998 5899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCeEecccCCCCCCcccccceEEEEEECCeEEEEEEcCCCCceEEEEeecCCHHHHHHHHHHHHHHHHHHHHHHhCC
Q 008527 327 AATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNS 406 (562)
Q Consensus 327 ~~TGa~ii~sl~~l~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~~~~TIll~G~t~~~l~e~k~~i~dal~~~~~~l~~~ 406 (562)
++|||++++++++++++.+|+|+.|++..+++++|++|+||+++..|||+|||+|+.+++|.||+++|||+++|+++++|
T Consensus 319 ~~tGa~iv~~~~~~~~~~LG~a~~v~~~~ig~~~~~~~~g~~~~~~~tI~lrg~te~~l~E~kr~i~DAl~~~r~av~~g 398 (527)
T 3p9d_B 319 LVTGGEVVSTFDEPSKCKLGECDVIEEIMLGEQPFLKFSGCKAGEACTIVLRGATDQTLDEAERSLHDALSVLSQTTKET 398 (527)
T ss_dssp HHTCCCCCSTTSCCTTSCEECSBCCBCCCSSSCCBCCBCSSCCSCCEECBCCTTCTTHHHHHHTHHHHHHHHHHHHHHCC
T ss_pred HHhCCEEecchhhCCHHHCCCCcEEEEEEecceEEEEEECCCCCCEEEEEEcCCCHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeccCCccHHHHHHHHHHHhhhccchHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHhccCCCCCCCceeEecC
Q 008527 407 TVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDIN 486 (562)
Q Consensus 407 ~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~~~~Gid~~ 486 (562)
++|||||++|++++.+|++++.+.++++|+++++|++||+.||++|++|||+|+.+++.+|++.|.. |+ .++|||+.
T Consensus 399 ~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~vv~~l~~~h~~--~~-~~~G~d~~ 475 (527)
T 3p9d_B 399 RTVLGGGCAEMVMSKAVDTEAQNIDGKKSLAVEAFARALRQLPTILADNAGFDSSELVSKLRSSIYN--GI-STSGLDLN 475 (527)
T ss_dssp CEEETTTHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHTSCSHHHHHHHHHHHHH--TC-SCCCCCSS
T ss_pred CcccCCcHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhc--CC-CceeEECC
Confidence 9999999999999999999998889999999999999999999999999999999999999999875 55 78999999
Q ss_pred CCCccccccCCcccchHHHHHHHHHHHHHHHHHHchhHhhcCCCcCCC
Q 008527 487 TGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPKVVCK 534 (562)
Q Consensus 487 ~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~iI~~~~~~~~ 534 (562)
+|++.||++.|||||+.||+++|++|+|+|++|||||++|...|++.+
T Consensus 476 ~g~~~dm~~~gI~dp~~vk~~al~~A~e~a~~iL~id~ii~~~~~~~~ 523 (527)
T 3p9d_B 476 NGTIADMRQLGIVESYKLKRAVVSSASEAAEVLLRVDNIIRARPRTAN 523 (527)
T ss_dssp STTCCCHHHHTCEEETTHHHHHHHHHHHHHHHHHHCCEEEEEC-----
T ss_pred CCCCcchHhccCEEcHHHHHHHHHHHHHHHHHHHhHHHHHhcCCcccC
Confidence 999999999999999999999999999999999999999998776543
No 19
>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=100.00 E-value=1.6e-108 Score=892.60 Aligned_cols=502 Identities=27% Similarity=0.439 Sum_probs=479.6
Q ss_pred cccccccc-HHHHHHHHHHHHHHHHHhhhccCCCCCceeeeCCCCCeEEecCHHHHhccccccChHHHHHHHHHHhcccc
Q 008527 14 EGTDTSQG-KAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSE 92 (562)
Q Consensus 14 ~~~~~~~g-~~~~~~n~~~~~~l~~iv~sslGP~G~~kmI~~~~g~~~iTnDG~tIl~~l~~~hP~akll~~~~~~~~~~ 92 (562)
+++++.+| .+++.+|+.||+.|+++|+|||||+||+|||+++.|+|+|||||+|||++|+++||+|||++++|++||++
T Consensus 1 ~~~~~~~g~~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~Akll~e~a~~qd~~ 80 (512)
T 3iyg_Q 1 EGAKHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILRELEVQHPAAKMIVMASHMQEQE 80 (512)
T ss_pred CCccccCCHHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCeEEeCCHHHHHHHcccCCHHHHHHHHHHHHhhhh
Confidence 46678899 79999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCchhHHHHHHHHHHHHHHHhHHCCCChhhHHHHHHHHHHHHHHHHHhhce--eccCCChHHHHHHHHHHHHHhhccCc
Q 008527 93 VGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAK--SIEGQSLEEKKRLLSKCAATTLSSKL 170 (562)
Q Consensus 93 ~GDGTtt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~l~~L~~~s~--~v~~~~~~~~~~~l~~ia~tsl~sk~ 170 (562)
+||||||++||+++||+++.+++++|+||+.|++||++|++.+++.|+++++ +.+..+ ++.|.++|+|+++||+
T Consensus 81 ~GDGTTtvvVLA~~Ll~~a~~lv~~GihP~~I~~G~~~A~~~a~~~L~~~~~~~~~~~~~----~~~l~~va~tsl~sK~ 156 (512)
T 3iyg_Q 81 VGDGTNFVLVFAGALLELAEELLRLGLSVSEVIEGYEIACKKAHEILPDLVCCSAKNLRD----VDEVSSLLHTSVMSKQ 156 (512)
T ss_pred hCCChhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCC----HHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999999999999999999999999999854 333333 6899999999999998
Q ss_pred cCchhHHHHHHHHHHHHHhCCCC---CCcceeEEEecCCCcccceeEEEEEEecccCCCcccCCcceecCceEEEeeccc
Q 008527 171 IGGEKEFFASMVVDAVGAIGDGD---RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNIEL 247 (562)
Q Consensus 171 ~~~~~~~ls~li~~Av~~v~~~~---d~~~I~i~~i~gg~~~ds~li~Giv~~~~~~~~~~~~~~~~l~n~kIll~~~~L 247 (562)
.+ ++++|++++++|+.++++++ |.++|+|.++.|++++||++++|++|+++|.+ ||++.+||+|+++++|+
T Consensus 157 ~~-~~~~i~~livdAv~~V~~~~~~i~v~~I~i~k~~Ggs~~ds~lv~G~~~dk~~~~-----~~~~~~n~kI~ll~~~l 230 (512)
T 3iyg_Q 157 YG-NEVFLAKLIAQACVSIFPDSGHFNVDNIRVCKILGSGVHSSSVLHGMVFKKETEG-----DVTSVKDAKIAVYSCPF 230 (512)
T ss_pred cc-chHHHHHHHHHHHHHHhccCCcccHhHeeEeeccCCCcccceEEeeEEEecCcCC-----CCcccccCceEEEeccc
Confidence 65 68999999999999998752 67889999999999999999999999999864 58999999999999999
Q ss_pred cccccccCceEEecCHHhHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcccHHHHHHHHhcCccccCCCChHHHHHHHH
Q 008527 248 ELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAA 327 (562)
Q Consensus 248 e~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lIi~~~~v~~~al~~l~~~~I~~v~~v~~~~Le~Ia~ 327 (562)
++.+++.++++.+++++++.++.+.|+++++++++++++.|++||+++++|++++++||++.||++++++++.+|+|||+
T Consensus 231 e~~~~e~k~~v~Is~~~~l~~~~~~E~~~l~~~v~~I~~~g~~vvi~~~~I~~la~~~l~k~~I~av~~~~~~dle~ia~ 310 (512)
T 3iyg_Q 231 DGMITETKGTVLIKSAEELMNFSKGEENLMDAQVKAIADTGANVVVTGGRVADMALHYANKYNIMLVRLNSKWDLRRLCK 310 (512)
T ss_pred ccccccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEECCCccHHHHHHHHHCCeEEEEeCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCeEecccCCCCCCcccccceEEEEEECCeEEEEEEcCC-CCceEEEEeecCCHHHHHHHHHHHHHHHHHHHHHHhCC
Q 008527 328 ATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCP-SGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNS 406 (562)
Q Consensus 328 ~TGa~ii~sl~~l~~~~lG~~~~v~~~~ig~~~~~~~~g~~-~~~~~TIll~G~t~~~l~e~k~~i~dal~~~~~~l~~~ 406 (562)
+|||++++++++++++++|+|+.|++.++|+++|++|++|+ ++..|||+|||+|+.+++|.||+++|||+++|+++++|
T Consensus 311 ~tGa~iis~l~~~~~~~LG~a~~v~~~~~g~~~~~~~~~~~~~~~~~tI~lrG~te~~l~E~kr~i~DAl~~~r~a~~~~ 390 (512)
T 3iyg_Q 311 TVGATALPRLNPPVLEEMGHCDSVYLSEVGDTQVVVFKHEKEDGAISTIVLRGSTDNLMDDIERAVDDGVNTFKVLTRDK 390 (512)
T ss_pred HhCCEEecccccCCHHHCCcccEEEEEEeCCeEEEEEEcccCCCceEEEEECCCcHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999997 47899999999999999999999999999999999999
Q ss_pred ceeccCCccHHHHHHHHHHHhhhccchHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHhccCCCCCCCceeEecC
Q 008527 407 TVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDIN 486 (562)
Q Consensus 407 ~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~~~~Gid~~ 486 (562)
++|||||++|++++.+|++++.+.++++|+++++|++||+.||++|++|||+|+.+++.+|++.|.. ++ .++|||+.
T Consensus 391 ~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~--~~-~~~G~d~~ 467 (512)
T 3iyg_Q 391 RLVPGGGATEIELAKQITSYGETCPGLEQYAIKKFAEAFEAIPRALAENSGVKANEVISKLYAVHQE--GN-KNVGLDIE 467 (512)
T ss_pred CEecCCcHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc--CC-CcEEEecC
Confidence 9999999999999999999998899999999999999999999999999999999999999999876 66 78999999
Q ss_pred CC--CccccccCCcccchHHHHHHHHHHHHHHHHHHchhHhhcC
Q 008527 487 TG--GIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKN 528 (562)
Q Consensus 487 ~g--~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~iI~~ 528 (562)
+| ++.||++.|||||+.||+++|++|+|+|++|||||++|+.
T Consensus 468 ~~~g~~~d~~~~gI~dp~~vk~~al~~A~~~a~~iL~id~ii~~ 511 (512)
T 3iyg_Q 468 AEVPAVKDMLEAGVLDTYLGKYWAIKLATNAAVTVLRVDQIIMA 511 (512)
T ss_pred CCCCcccchHhccCeEcHHHHHHHHHHHHHHHHHHHhHhHheec
Confidence 65 9999999999999999999999999999999999999975
No 20
>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* 4d8q_H* 4d8r_h*
Probab=100.00 E-value=9.1e-111 Score=917.93 Aligned_cols=520 Identities=26% Similarity=0.435 Sum_probs=478.9
Q ss_pred hhHhhcccccccccc-HHHHHHHHHHHHHHHHHhhhccCCCCCceeeeCCCCCeEEecCHHHHhccccccChHHHHHHHH
Q 008527 7 PQIILLKEGTDTSQG-KAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDI 85 (562)
Q Consensus 7 ~~~~~~~~~~~~~~g-~~~~~~n~~~~~~l~~iv~sslGP~G~~kmI~~~~g~~~iTnDG~tIl~~l~~~hP~akll~~~ 85 (562)
+...+|+++.++.+| .+++.+|+.||+.|+++|+|||||+||+|||+++.|+++|||||+|||++|+++||+|||++++
T Consensus 9 ~~~~~l~~~~~~~~g~~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~ITnDG~TIlk~i~v~hP~Akll~e~ 88 (568)
T 3p9d_H 9 PNAGLFKQGYNSYSNADGQIIKSIAAIRELHQMCLTSMGPCGRNKIIVNHLGKIIITNDAATMLRELDIVHPAVKVLVMA 88 (568)
T ss_dssp CCCSSCCSSCCBCCCHHHHHHHHHHHHHHHHHHHHTTSSSSSCEEEEECTTSCEEEESCHHHHTTTCCCCCHHHHHHHHH
T ss_pred chhhhhhcCccccccHHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCeEEeCCHHHHHHHcccCCHHHHHHHHH
Confidence 567789999999888 5699999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcccccCCchhHHHHHHHHHHHHHHHhHHCCCChhhHHHHHHHHHHHHHHHHHhhceeccCCChHHHHHHHHHHHHHh
Q 008527 86 AKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATT 165 (562)
Q Consensus 86 ~~~~~~~~GDGTtt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~v~~~~~~~~~~~l~~ia~ts 165 (562)
|++||+++||||||++||+++||+++.+++++|+||+.|++||++|++.+++.|+++++++.... .+++.|.++|+|+
T Consensus 89 a~~qd~e~GDGTTtvvvLa~~Ll~~a~~ll~~GihP~~I~~G~~~A~~~a~e~L~~~a~~v~~~~--~~~~~l~~va~ts 166 (568)
T 3p9d_H 89 TEQQKIDMGDGTNLVMILAGELLNVSEKLISMGLSAVEIIQGYNMARKFTLKELDEMVVGEITDK--NDKNELLKMIKPV 166 (568)
T ss_dssp HHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHCCSCCCCC--CTTHHHHHHHHHH
T ss_pred HHhhhceeCCCceehHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCC--CCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998762110 1268999999999
Q ss_pred hccCccCchhHHHHHHHHHHHHHhCCC--------C-CCcceeEEEecCCCcccceeEEEEEEecccCCCcccCCcceec
Q 008527 166 LSSKLIGGEKEFFASMVVDAVGAIGDG--------D-RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFL 236 (562)
Q Consensus 166 l~sk~~~~~~~~ls~li~~Av~~v~~~--------~-d~~~I~i~~i~gg~~~ds~li~Giv~~~~~~~~~~~~~~~~l~ 236 (562)
++||+.+++ ++|++|+++|+.+++++ + |.++|+|+++.|++++||++++|++|++++. .||++++
T Consensus 167 l~sK~~~~~-~~i~~livdAv~~V~~~~~~~~~~~~~dl~~I~I~k~~Ggs~~dS~lv~G~v~dk~~~-----~m~~~i~ 240 (568)
T 3p9d_H 167 ISSKKYGSE-DILSELVSEAVSHVLPVAQQAGEIPYFNVDSIRVVKIMGGSLSNSTVIKGMVFNREPE-----GHVKSLS 240 (568)
T ss_dssp HTTTSTTCH-HHHHHHHHHHHTTSCC---------CCCGGGCEEEEEESSCGGGCEEESSCCBSSCBS-----SGGGSCC
T ss_pred hhccCcchH-HHHHHHHHHHHHHHhhccccccCCcccccceEEEEEccCCCcchheeeccEEEeeccc-----CCcEEEe
Confidence 999998887 99999999999999763 2 5779999999999999999999999999984 4689999
Q ss_pred ---CceEEEeeccccccccccCceEEecCHHhHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcccHHHHHHHHhcCccc
Q 008527 237 ---NPKILLLNIELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFC 313 (562)
Q Consensus 237 ---n~kIll~~~~Le~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lIi~~~~v~~~al~~l~~~~I~~ 313 (562)
||||++++++|++++++.++++.+++++++.++.++|++++++++++|++.|++|||++++|++.+++||.++||++
T Consensus 241 ~~~n~kIlll~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~I~~~g~~vvi~~~~I~~~al~~L~~~gI~a 320 (568)
T 3p9d_H 241 EDKKHKVAVFTCPLDIANTETKGTVLLHNAQEMLDFSKGEEKQIDAMMKEIADMGVECIVAGAGVGELALHYLNRYGILV 320 (568)
T ss_dssp CCSSCEEEEECSCSSSCCCSSSCEEECCSHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEECSCCCHHHHHHHHHHTCEE
T ss_pred cCCcceEEEEccCccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEECCCcChHHHHHHHHCCeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCChHHHHHHHHHhCCeEecccCCCCCCcccccceEEEEEECCeEEEEEEcCC--CCceEEEEeecCCHHHHHHHHHH
Q 008527 314 AGRVAEEDLLRVAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCP--SGRTATIVLRGGADQFIEEAERS 391 (562)
Q Consensus 314 v~~v~~~~Le~Ia~~TGa~ii~sl~~l~~~~lG~~~~v~~~~ig~~~~~~~~g~~--~~~~~TIll~G~t~~~l~e~k~~ 391 (562)
++++++.+|+|||++|||++++++++++++++|+|+.|++.++|+++|++|+||+ +++.|||+|||+|+.+++|.||+
T Consensus 321 v~~v~~~~leria~~tGa~ivs~l~~l~~~~LG~a~~v~~~~ig~~~~~~~~g~~~l~~~~~TIllrG~t~~~l~E~er~ 400 (568)
T 3p9d_H 321 LKVPSKFELRRLCRVCGATPLPRLGAPTPEELGLVETVKTMEIGGDRVTVFKQEQGEISRTSTIILRGATQNNLDDIERA 400 (568)
T ss_dssp ECCCCHHHHHHHHHHHSCCCCSSSSCCCGGGCEECSCCCCCEETTEECBCCCCCSSSCCSSCEEEEEESCHHHHHHHHHH
T ss_pred EecCCHHHHHHHHHHhCCEEEeccccCCHHHCCcceEEEEEEecCceEEEEecCCCCCCCeEEEEECCCcHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998 78999999999999999999999
Q ss_pred HHHHHHHHHHHHh--CCceeccCCccHHHHHHHHHHHhhhccchHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHH
Q 008527 392 LHDAIMIVRRATK--NSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQ 469 (562)
Q Consensus 392 i~dal~~~~~~l~--~~~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~~~~~l~~ 469 (562)
++|||+++|++++ ++++|||||++|++++.+|++++.+.++++|+++++||+||+.||++|++|||+|+.+++.+|++
T Consensus 401 i~DAL~vvr~av~~~d~~iVpGGGa~E~~ls~~L~~~a~~~~g~eq~~i~~fa~ALe~ip~~La~NaG~d~~~~v~~l~~ 480 (568)
T 3p9d_H 401 IDDGVAAVKGLMKPSGGKLLPGAGATEIELISRITKYGERTPGLLQLAIKQFAVAFEVVPRTLAETAGLDVNEVLPNLYA 480 (568)
T ss_dssp HHHHHHHHHHTTSTTCCCCCCTTTHHHHHHHHHHHHHHHTCCSTHHHHHHHHHHGGGHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCeEEeCCcHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 9999999999999 88999999999999999999999989999999999999999999999999999999999999999
Q ss_pred hccCC------CCCCCceeEecCCCC---ccccccCCcccchHHHHHHHHHHHHHHHHHHchhHhhcCCCcCCCc
Q 008527 470 KHALP------TGEGAPYGVDINTGG---IADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPKVVCKQ 535 (562)
Q Consensus 470 ~~~~~------~~~~~~~Gid~~~g~---~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~iI~~~~~~~~~ 535 (562)
.|..+ +++ .++|||+.+|+ +.||++.|||||+.||+++|+.|+|+|++|||||++|..+|..++.
T Consensus 481 ~h~~~~~~~~~~~~-~~~G~d~~~g~~~~~~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~iD~ii~~~~~~~~~ 554 (568)
T 3p9d_H 481 AHNVTEPGAVKTDH-LYKGVDIDGESDEGVKDIREENIYDMLATKKFAINVATEAATTVLSIDQIIMAKKAGGPR 554 (568)
T ss_dssp CCCCSSCCCCCCTT-SSSCCCHHHHTCCCCHHHHHHHHHHHHHHHHHHHHCCEECBCCC----------------
T ss_pred HhhhhcccccccCC-CceeEcccCCCcccccChHHccCEEcHHHHHHHHHHHHHHHHHHHhHHHHhhccccCCCC
Confidence 88541 133 68999999997 9999999999999999999999999999999999999998876665
No 21
>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* 4d8q_F* 4d8r_f*
Probab=100.00 E-value=1.5e-110 Score=914.22 Aligned_cols=520 Identities=27% Similarity=0.450 Sum_probs=490.9
Q ss_pred hhccccccccccHHHHHHHHHHHHHHHHHhhhccCCCCCceeeeCCCCCeEEecCHHHHhccccccChHHHHHHHHHHhc
Q 008527 10 ILLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQ 89 (562)
Q Consensus 10 ~~~~~~~~~~~g~~~~~~n~~~~~~l~~iv~sslGP~G~~kmI~~~~g~~~iTnDG~tIl~~l~~~hP~akll~~~~~~~ 89 (562)
.++++++++.+|.+++.+|+.||+.|+++|+|||||+||+|||+++.|+++|||||+|||++|+++||+|+|++++|++|
T Consensus 4 ~~~~~~~~~~~g~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~akll~e~a~~q 83 (546)
T 3p9d_F 4 QLLNPKAESLRRDAALKVNVTSAEGLQSVLETNLGPKGTLKMLVDGAGNIKLTKDGKVLLTEMQIQSPTAVLIARAAAAQ 83 (546)
T ss_dssp CSSCTTEEEEEHHHHHHHHHHHHTHHHHHHTTTSSTTCCEEEEECTTSCEEEECCHHHHHHTSCCCCHHHHHHHHHHHHH
T ss_pred cccCCCcchhhHHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEECCCCCEEEECCHHHHHHHccCcCHHHHHHHHHHHHH
Confidence 36788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCchhHHHHHHHHHHHHHHHhHHCCCChhhHHHHHHHHHHHHHHHHHhhceeccCCChHHHHHHHHHHHHHhhccC
Q 008527 90 DSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSK 169 (562)
Q Consensus 90 ~~~~GDGTtt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~v~~~~~~~~~~~l~~ia~tsl~sk 169 (562)
|+++||||||+||||++||+++.+++++|+||+.|++||++|++.+++.|+++++|++... .+++.|.++|+|+++||
T Consensus 84 d~e~GDGTTtvvVLA~eLL~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~a~~v~~~~--~~~~~L~~vA~tsl~sK 161 (546)
T 3p9d_F 84 DEITGDGTTTVVCLVGELLRQAHRFIQEGVHPRIITDGFEIARKESMKFLDEFKISKTNLS--NDREFLLQVARSSLLTK 161 (546)
T ss_dssp HHHCSSCHHHHHHHHHHHHHHHHHHTTTTBCHHHHHHHHHHHHHHHHHHHHHHCCCCSSSS--TTCHHHHHHHHHHTCST
T ss_pred HHHhCCCcccHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhhccccccc--cCHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999999999999999999999999999886410 12579999999999999
Q ss_pred ccCchhHHHHHHHHHHHHHhCCC---C-CCcceeEEEecCCCcccceeEEEEEEecccCCCcccCCcceecCceEEEeec
Q 008527 170 LIGGEKEFFASMVVDAVGAIGDG---D-RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNI 245 (562)
Q Consensus 170 ~~~~~~~~ls~li~~Av~~v~~~---~-d~~~I~i~~i~gg~~~ds~li~Giv~~~~~~~~~~~~~~~~l~n~kIll~~~ 245 (562)
+.+.+.++|+++++||+..+.+. + |.++|+++++.||+.+||++++|++|++++.||+ ||++++||||+++++
T Consensus 162 i~~~~~d~la~l~vdaV~~V~~~~~~~~dl~~I~i~ki~Gg~~~ds~lv~G~v~dk~~~~~~---m~~~~en~kIll~~~ 238 (546)
T 3p9d_F 162 VDADLTEVLTPIVTDAVLSVYDAQADNLDLHMVEIMQMQHLSPKDTTFIKGLVLDHGGRHPD---MPTRVKNAYVLILNV 238 (546)
T ss_dssp THHHHCSSHHHHHHHHHHHTHHHHHTTCCGGGEEEECCCCSCTTTCCCCSSCEESCCCCSSS---SCSSBCSCCCCEECC
T ss_pred cchhHHHHHHHHHHHhheEeecCCCCcccchheEEEEecCCCccccEEEeeEEEeccccccc---CcceecCceEEEecC
Confidence 99999999999999999988632 2 7899999999999999999999999999999986 689999999999999
Q ss_pred cccccccccCceEEecCHHhHHHHHHHHHHHHHHHHHHHHHcC----------CeEEEEcCcccHHHHHHHHhcCccccC
Q 008527 246 ELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSG----------AKVVLSRLAIGDLATQYFADRDIFCAG 315 (562)
Q Consensus 246 ~Le~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~----------~~lIi~~~~v~~~al~~l~~~~I~~v~ 315 (562)
+||+++++.++++.++++++++.+.+.|++++++.+++|...+ +.||+++++|++.+++||.++||++++
T Consensus 239 ~Le~~k~e~~~~~~i~~~~~~~~~~~~E~~~~~~~v~~I~~~~~~v~~~~~g~~~vIi~~k~I~~~Al~~L~~~gI~~vr 318 (546)
T 3p9d_F 239 SLEYEKTEVNSGFFYSSADQRDKLAASERKFVDAKLKKIIDLKNEVCGMDPDKGFVIINQKGIDPMSLDVFAKHNILALR 318 (546)
T ss_dssp CSSSCCCSSCBCCCCCSSSCHHHHHHHHHHHHHHHHHHHHHCC-----------CEEEESSCCCHHHHHHHTTTTCEEEC
T ss_pred cccccccccCceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCceEEEecCcCcHHHHHHHHHCCCeeEe
Confidence 9999999999999999999999999999999999999998754 349999999999999999999999999
Q ss_pred CCChHHHHHHHHHhCCeEecccCCCCCCcccccceEEEEEECCeEEEEEEcCCCCceEEEEeecCCHHHHHHHHHHHHHH
Q 008527 316 RVAEEDLLRVAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDA 395 (562)
Q Consensus 316 ~v~~~~Le~Ia~~TGa~ii~sl~~l~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~~~~TIll~G~t~~~l~e~k~~i~da 395 (562)
++++++|+|||++|||++++++++++++.+|+|+.|++.++++++|++|+||++++.|||+|||+|+.+++|+||+++||
T Consensus 319 ~v~~~~leria~~tGa~ii~~l~~l~~~~LG~a~~v~~~~ig~~~~~~i~g~~~~~~~tI~lrG~te~~l~E~kr~l~DA 398 (546)
T 3p9d_F 319 RAKRRNMERLQLVTGGEAQNSVEDLSPQILGFSGLVYQETIGEEKFTYVTENTDPKSCTILIKGSTHYALAQTKDAVRDG 398 (546)
T ss_dssp CCCHHHHHHHHHTTTBCCCCCCSSCSTTCCBCCCCBCBCCCSSCCCEECSSCSCCSCEEEECCCSCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHhCCEEecchhhCCHhHCCcccEEEEEEecCceEEEEecCCCCceEEEEECCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCceeccCCccHHHHHHHHHH---HhhhccchHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHhcc
Q 008527 396 IMIVRRATKNSTVVAGGGAIDMEISKYLRQ---ESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHA 472 (562)
Q Consensus 396 l~~~~~~l~~~~vvpGGG~~E~~l~~~L~~---~~~~~~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~~~~~l~~~~~ 472 (562)
|+++|+++++|++|||||++|++++.+|++ ++...++++|+++++|++||+.||++|++|||+|+.+++.+|++.|.
T Consensus 399 l~~~r~av~~~~iVpGGGa~e~~~s~~L~~~~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~ 478 (546)
T 3p9d_F 399 LRAVANVLKDKNIIPGAGAFYIALSRYLRSANMNKLGAKGKTKTGIEAFAEALLVIPKTLVKNSGFDPLDVLAMVEDELD 478 (546)
T ss_dssp HHHHHHHTTSCCEEETTTHHHHHHHHHHHHHHTTTTTTTSHHHHHHHHHHHHHHHHHHHHHTTTCCTTTTCCHHHHHHHH
T ss_pred HHHHHHHhcCCcEEeCCCHHHHHHHHHHHhhhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhh
Confidence 999999999999999999999999999999 58888999999999999999999999999999999999999999886
Q ss_pred C---CCCCCCceeEecCCCCccccccCCcccchHHHHHHHHHHHHHHHHHHchhHhhcCCCcCCCc
Q 008527 473 L---PTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPKVVCKQ 535 (562)
Q Consensus 473 ~---~~~~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~iI~~~~~~~~~ 535 (562)
. +++. .++|||+.+|++.||++.|||||+.||+++|++|+|+|++|||||++|+.++..+..
T Consensus 479 ~~~~~~~~-~~~G~d~~~g~~~d~~~~gI~dp~~vk~~al~~A~~~a~~iL~iD~ii~~~~~~~~~ 543 (546)
T 3p9d_F 479 DAQDSDET-RYVGVDLNIGDSCDPTIEGIWDSYRVLRNAITGATGIASNLLLCDELLRAGRSTLKE 543 (546)
T ss_dssp HHTTSTTS-SCCCCBTTTTBCCCSGGGTCEEEHHHHHHHHHHHHHHHHHHHTEEEEEEECCSSCCC
T ss_pred hhhcccCC-ceeeEeCCCCeecchHhccCEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCC
Confidence 1 0022 679999999999999999999999999999999999999999999999987765543
No 22
>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii}
Probab=100.00 E-value=1.8e-103 Score=849.82 Aligned_cols=475 Identities=34% Similarity=0.580 Sum_probs=382.8
Q ss_pred eeeCCCCCeEEecCHHHHhccccccChHHHHHHHHHHhcccccCCchhHHHHHHHHHHHHHHHhHHCCCChhhHHHHHHH
Q 008527 51 LIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRN 130 (562)
Q Consensus 51 mI~~~~g~~~iTnDG~tIl~~l~~~hP~akll~~~~~~~~~~~GDGTtt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~ 130 (562)
||+++.|+++|||||+|||++|+++||+|||++++|++||+++||||||++|||++||+++.+++++|+||+.|++||++
T Consensus 1 mlv~~~G~~~iTnDG~tIlk~i~v~hP~Akll~e~a~~qd~e~GDGTTtvvvLa~~LL~~a~~ll~~GihP~~I~~G~~~ 80 (500)
T 3aq1_B 1 MLVDSMGDIVITNDGATILKEMDIQHPAAKMIVEVSKTQDAEVGDGTTTAAVLSGELLSKAEELIMKGVHSTIISEGYRH 80 (500)
T ss_dssp ------------------------------------------CCHHHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred CccCCCCCeEEECcHHHHHHhCcCCCHHHHHHHHHHHhhhhhhCCChHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhceeccCCChHHHHHHHHHHHHHhhccCccCchhHHHHHHHHHHHHHhCCC--C----C-CcceeEEEe
Q 008527 131 ASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKEFFASMVVDAVGAIGDG--D----R-LNMIGIKKV 203 (562)
Q Consensus 131 a~~~~l~~L~~~s~~v~~~~~~~~~~~l~~ia~tsl~sk~~~~~~~~ls~li~~Av~~v~~~--~----d-~~~I~i~~i 203 (562)
|++.+++.|+++++|++..+ ++.|.++|+|+|+||+.++|+++|++++++|+.+++++ . | .++|+|+++
T Consensus 81 A~~~a~~~L~~~s~~v~~~d----~~~l~~va~tsl~sKi~~~~~~~i~~li~dAv~~v~~~~~g~~~~di~~~I~V~k~ 156 (500)
T 3aq1_B 81 AAEKCREILETITIAISPDD----EAALIKIAGTAITGKGAEAYKEKLSALTVKAVRSIVEEEEDGLKVNVLENIKIEKR 156 (500)
T ss_dssp HHHHHHHHHHHHCEECCTTC----HHHHHHHHHTTCCSSSTTSSHHHHHHHHHHHHTTSEECCSSSCEECHHHHEEEEEE
T ss_pred HHHHHHHHHHHhcCCCCCCc----HHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHhcccccCCccccccccEEEEEe
Confidence 99999999999999987654 78999999999999999999999999999999999754 1 4 678999999
Q ss_pred cCCCcccceeEEEEEEecccCCCcccCCcceecCceEEEeeccccccccccCceEEecCHHhHHHHHHHHHHHHHHHHHH
Q 008527 204 PGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNIELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDK 283 (562)
Q Consensus 204 ~gg~~~ds~li~Giv~~~~~~~~~~~~~~~~l~n~kIll~~~~Le~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~ 283 (562)
+|++++||++++|++|+++|.|||| |++++||||++++++|++++++.++++.++++++++++.++|++++++++++
T Consensus 157 ~G~~~~ds~lv~G~v~dk~~~~~~m---~~~i~n~kIll~~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~ 233 (500)
T 3aq1_B 157 AGGSIDDSELIDGLVIDKERSHPNM---PEKVENAKILLLSCPVEFRKTEVDSEIKITSPGQMQLFLDQEEKMMREMAEK 233 (500)
T ss_dssp ESSCGGGCEEESEEEESCCCSSTTS---CSEEEEEEEEEESSCBCC-------------------------CHHHHHHHH
T ss_pred cCCCccceEEEeeeEEeecCCCCCC---cccccCCEEEEEeCCccccccccceeEeeCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999985 7999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCeEEEEcCcccHHHHHHHHhcCccccCCCChHHHHHHHHHhCCeEecccCCCCCCcccccceEEEEEECCeEEEE
Q 008527 284 CVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNI 363 (562)
Q Consensus 284 i~~~~~~lIi~~~~v~~~al~~l~~~~I~~v~~v~~~~Le~Ia~~TGa~ii~sl~~l~~~~lG~~~~v~~~~ig~~~~~~ 363 (562)
+++.|++|||++++|++.+++||.++||++++++++++|+|||++|||++++++++++++++|+|+.|++.++|+++|++
T Consensus 234 I~~~g~~lvi~~~~I~~~al~~L~~~~I~av~~~~k~~le~ia~~tGa~iis~l~~~~~~~LG~a~~v~~~~ig~~~~~~ 313 (500)
T 3aq1_B 234 VIASGANVVFCQKGIDDMAQYYIEKAGIYAVRRVKKSDLKRLSKVTGATIIQDLDQITTEDVGTAGLVEEKEVRGGKMTY 313 (500)
T ss_dssp HHTTCCSEEEESSCBCHHHHHHHHHTTCEEECSCCHHHHHHHHHHHCCCCBSCTTCCCSTTCEEEEEEEEEECSSSEEEE
T ss_pred HHHhCcCEEEECCCcCHHHHHHHHHCCEEEEEeCCHHHHHHHHHHhCCeEecccccCCHhHCCCceEEEEEEecCeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCceEEEEeecCCHHHHHHHHHHHHHHHHHHHHHHhCCceeccCCccHHHHHHHHHHHhhhccchHHHHHHHHHH
Q 008527 364 FSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAK 443 (562)
Q Consensus 364 ~~g~~~~~~~TIll~G~t~~~l~e~k~~i~dal~~~~~~l~~~~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~ 443 (562)
|+||++++.|||+|||+|+.+++|.||+++||++++|+++++|++|||||++|++++.+|++++.+.++++|+++++|++
T Consensus 314 ~~g~~~~~~~TI~lrG~t~~~l~E~er~l~Dal~~~r~~~~~~~iVpGGGa~e~~~~~~L~~~~~~~~g~~q~~i~~~a~ 393 (500)
T 3aq1_B 314 VTGCQNSKAVTVLLHGGTEHVVDSLDHALNDALHVVGVVIEDGKVVVGGGSSEVELSLRLSEYASTLKGREQLAVSKFAE 393 (500)
T ss_dssp EEEETTCCCEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHHSEEEETTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHH
T ss_pred EECCCCCceEEEEecCCcHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHHHHhhhcCchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998889999999999999
Q ss_pred HHhHHHHHHHHhcCCCHHHHHHHHHHhccCCCCCCCceeEecCCCCccccccCCcccchHHHHHHHHHHHHHHHHHHchh
Q 008527 444 ALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVD 523 (562)
Q Consensus 444 AL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD 523 (562)
||+.||++|++|||+|+.+++.+|++.|.. ++ .++|||+.+|++.||.+.|||||+.||+++|++|+|+|++|||||
T Consensus 394 ALe~ip~~La~NaG~d~~~~v~~l~~~h~~--~~-~~~G~d~~~g~~~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~iD 470 (500)
T 3aq1_B 394 ALEVIPVALAENAGLDPIDIMVELRSQHEK--GN-KNAGLNVYTGEVVDMWENDVIEPLRIKTQAINAAMEATVMILRID 470 (500)
T ss_dssp HTTHHHHHHHHHTTCCHHHHHHHHHHHHHT--TC-TTEEECTTTCCEEETTTTTCEEEHHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHhcC--CC-CCeeEeCCCCCccchHhcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998875 55 789999999999999999999999999999999999999999999
Q ss_pred HhhcCCCcCCCc
Q 008527 524 ETVKNPKVVCKQ 535 (562)
Q Consensus 524 ~iI~~~~~~~~~ 535 (562)
++|...|.+++.
T Consensus 471 ~iI~~~~~~~~~ 482 (500)
T 3aq1_B 471 DVVASKGSANQG 482 (500)
T ss_dssp ------------
T ss_pred HHHhcCccCCCC
Confidence 999987765543
No 23
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a*
Probab=100.00 E-value=2e-96 Score=798.93 Aligned_cols=467 Identities=24% Similarity=0.362 Sum_probs=431.9
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhhccCCCCCceeeeCCCCCeEEecCHHHHhccccccCh----HHHHHHHHHHhcccc
Q 008527 17 DTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHP----AAKILVDIAKSQDSE 92 (562)
Q Consensus 17 ~~~~g~~~~~~n~~~~~~l~~iv~sslGP~G~~kmI~~~~g~~~iTnDG~tIl~~l~~~hP----~akll~~~~~~~~~~ 92 (562)
+..+|.++|.+|+.||..|+++|+|||||+||+|||+++.|+++|||||+||+++|+++|| +|||++++|++||++
T Consensus 4 ~~~~g~~ar~~~~~~~~~la~~vkttLGPkG~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~en~~Akll~e~a~~qd~e 83 (543)
T 1we3_A 4 ILVFDEAARRALERGVNAVANAVKVTLGPRGRNVVLEKKFGSPTITKDGVTVAKEVELEDHLENIGAQLLKEVASKTNDV 83 (543)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHHHGGGCSTTCCEEEECCSSSSCEEECCHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEECCCCCeEEEcCHHHHHHHcccCChHHhHHHHHHHHHHHhhhee
Confidence 4678999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred cCCchhHHHHHHHHHHHHHHHhHHCCCChhhHHHHHHHHHHHHHHHHHhhceeccCCChHHHHHHHHHHHHHhhccCccC
Q 008527 93 VGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIG 172 (562)
Q Consensus 93 ~GDGTtt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~v~~~~~~~~~~~l~~ia~tsl~sk~~~ 172 (562)
+||||||++||+++||+++.+++++|+||+.|++||++|++.+++.|+++++|++. ++.|.++|+++++
T Consensus 84 ~GDGTTtvvVLA~~LL~ea~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~------~~~l~~vA~iS~~----- 152 (543)
T 1we3_A 84 AGDGTTTATVLAQAIVREGLKNVAAGANPLALKRGIEKAVEAAVEKIKALAIPVED------RKAIEEVATISAN----- 152 (543)
T ss_dssp HSSCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTCBCCCS------HHHHHHHHHHHHT-----
T ss_pred cCCCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCC------HHHHHHhhhhhcC-----
Confidence 99999999999999999999999999999999999999999999999999999862 5799999998853
Q ss_pred chhHHHHHHHHHHHHHhCCCCCCcceeEEEecCCCcccc-eeEEEEEEecccCCCcc----cCCcceecCceEEEeeccc
Q 008527 173 GEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTMRDS-FLVNGVAFKKTFSYAGF----EQQPKKFLNPKILLLNIEL 247 (562)
Q Consensus 173 ~~~~~ls~li~~Av~~v~~~~d~~~I~i~~i~gg~~~ds-~li~Giv~~~~~~~~~~----~~~~~~l~n~kIll~~~~L 247 (562)
++++++++++|+.+++++ +.|.|. +|++++|+ ++++|++|+++|.|||| ++|+++++||+|++++++|
T Consensus 153 --~~~i~~li~dAv~~V~~~---g~I~Ve--~G~~~~ds~~lv~G~~~dkg~~~p~~vt~~~~m~~~~en~~Ill~d~~I 225 (543)
T 1we3_A 153 --DPEVGKLIADAMEKVGKE---GIITVE--ESKSLETELKFVEGYQFDKGYISPYFVTNPETMEAVLEDAFILIVEKKV 225 (543)
T ss_dssp --CHHHHHHHHHHHHTTCTT---SEEEEE--ECSSSSCEEEEECSEEESCCBSSGGGCSBTTTTBCCEEEEEEEEESSCB
T ss_pred --CHHHHHHHHHHHHHhCcC---CcEEEe--cCCccccceEEEcCEEEecCccccccccCcccCceeecCceEEEECCCc
Confidence 688999999999999865 445554 78999998 99999999999999998 3578889999999999974
Q ss_pred cccccccCceEEecCHHhHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcccHHHHHHHHhcC------cc-----ccCC
Q 008527 248 ELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRD------IF-----CAGR 316 (562)
Q Consensus 248 e~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lIi~~~~v~~~al~~l~~~~------I~-----~v~~ 316 (562)
+++++ +.++++++++.|++|||++++|++.++++|..++ ++ .+++
T Consensus 226 -------------s~~~~-----------l~~~le~i~~~g~~lvii~~~I~~~Al~~L~~n~irg~~~v~aVk~~~~~~ 281 (543)
T 1we3_A 226 -------------SNVRE-----------LLPILEQVAQTGKPLLIIAEDVEGEALATLVVNKLRGTLSVAAVKAPGFGD 281 (543)
T ss_dssp -------------CCHHH-----------HHHHHHHHHTTTCCEEEEESCBCHHHHHHHHHHHHHTSCCEEEEECSSSHH
T ss_pred -------------CCHHH-----------HHHHHHHHHhcCCCEEEEcCCccHHHHHHHHHhccccceeEEEEeccchhh
Confidence 45555 4678999999999999999999999999998754 44 4558
Q ss_pred CChHHHHHHHHHhCCeEecc-----cCCCCCCcccccceEEEEEECCeEEEEEEcCCCC---------------------
Q 008527 317 VAEEDLLRVAAATGGTVQTS-----VNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSG--------------------- 370 (562)
Q Consensus 317 v~~~~Le~Ia~~TGa~ii~s-----l~~l~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~--------------------- 370 (562)
+++++|+|||++|||+++++ +++++.+++|+|+.|++ +++++++|+||.++
T Consensus 282 ~~~~~le~ia~~tGa~ii~~~~g~~l~~~~~~~LG~a~~v~~---~~~~~~~i~g~~~~~~i~~r~~~i~~~~~~~~s~~ 358 (543)
T 1we3_A 282 RRKEMLKDIAAVTGGTVISEELGFKLENATLSMLGRAERVRI---TKDETTIVGGKGKKEDIEARINGIKKELETTDSEY 358 (543)
T ss_dssp HHHHHHHHHHHHHCCCCBCTTTTCCGGGCCGGGCEEEEEEEE---CSSCEEEEEECCCHHHHHHHHHHHHHHHTTCCSHH
T ss_pred hhHHHHHHHHHHhCCceeeccccCCcccCCHHHCCCceEEEE---EcCEEEEEcCCCCHHHHHHHHHHHHHHhhccCchh
Confidence 99999999999999999996 89999999999999976 57999999998753
Q ss_pred --------------ceEEEEeecCCHHHHHHHHHHHHHHHHHHHHHHhCCceeccCCccHHHHHHHHHHHhhhccchHHH
Q 008527 371 --------------RTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQF 436 (562)
Q Consensus 371 --------------~~~TIll~G~t~~~l~e~k~~i~dal~~~~~~l~~~~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~ 436 (562)
..|||+|||+|+.+++|.||+++||++++|+++++| +|||||++|++++.+|++++.+.++++|+
T Consensus 359 ~~e~l~erlakl~~~~~tI~lrG~te~~l~E~~r~i~DAl~~~r~av~~g-iVpGGGa~e~~~s~~L~~~~~~~~g~~q~ 437 (543)
T 1we3_A 359 AREKLQERLAKLAGGVAVIRVGAATETELKEKKHRFEDALNATRAAVEEG-IVPGGGVTLLRAISAVEELIKKLEGDEAT 437 (543)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECCSSHHHHHHHHHHHHHHHHHHHHHHHHC-EEETTTHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHhccCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHhccC-cCCCccHHHHHHHHHHHHHhhccCchHHH
Confidence 689999999999999999999999999999999999 99999999999999999998878899999
Q ss_pred HHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHhccCCCCCCCceeEecCCCCccccccCCcccchHHHHHHHHHHHHHH
Q 008527 437 FINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAA 516 (562)
Q Consensus 437 ~~~~~a~AL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a 516 (562)
++++|++||+.||++|++|||+|+.+++.+|+..|. + .++|||+.+|++.||++.|||||+.||+++|++|+|+|
T Consensus 438 ~i~~~a~ALe~ip~~La~NaG~d~~~vv~~l~~~h~----~-~~~G~d~~~g~~~dm~~~gI~dp~~vk~~al~~A~e~a 512 (543)
T 1we3_A 438 GAKIVRRALEEPARQIAENAGYEGSVIVQQILAETK----N-PRYGFNAATGEFVDMVEAGIVDPAKVTRSALQNAASIG 512 (543)
T ss_dssp HHHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHHCCS----C-TTEEEETTTTEEEETTTTTCEEEHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHhcC----C-CCEEEeCCCCeecccccCCcCccHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999883 3 77999999999999999999999999999999999999
Q ss_pred HHHHchhHhhcCCCcCCC
Q 008527 517 CLILSVDETVKNPKVVCK 534 (562)
Q Consensus 517 ~~iL~iD~iI~~~~~~~~ 534 (562)
++|||+|++|...|++.+
T Consensus 513 ~~iL~id~iI~~~~~~~~ 530 (543)
T 1we3_A 513 ALILTTEAVVAEKPEKKE 530 (543)
T ss_dssp HHHHTEEEEEEECSCC--
T ss_pred HHHHHHHHHhhcCCccCC
Confidence 999999999998776443
No 24
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ...
Probab=100.00 E-value=5.3e-96 Score=794.28 Aligned_cols=464 Identities=22% Similarity=0.342 Sum_probs=430.2
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhhccCCCCCceeeeCCCCCeEEecCHHHHhccccccCh----HHHHHHHHHHhcccc
Q 008527 17 DTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHP----AAKILVDIAKSQDSE 92 (562)
Q Consensus 17 ~~~~g~~~~~~n~~~~~~l~~iv~sslGP~G~~kmI~~~~g~~~iTnDG~tIl~~l~~~hP----~akll~~~~~~~~~~ 92 (562)
+..+|.++|.+|+.||+.|+++|+|||||+||+|||+++.|+|+|||||+||+++|+++|| +|||++++|++||++
T Consensus 4 ~~~~g~~ar~~~i~~~~~la~~vkttLGPkG~~kmi~~~~G~~~ITnDG~tIlk~i~~~hp~en~~Akll~e~a~~qd~e 83 (547)
T 1kp8_A 4 DVKFGNDAGVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDA 83 (547)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHHHHTTCSTTCCEEEECCSSSSCEEECCHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEECCCCCeEEEcCHHHHHHHccccChhhhHHHHHHHHHHHhhccc
Confidence 4678999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred cCCchhHHHHHHHHHHHHHHHhHHCCCChhhHHHHHHHHHHHHHHHHHhhceeccCCChHHHHHHHHHHHHHhhccCccC
Q 008527 93 VGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIG 172 (562)
Q Consensus 93 ~GDGTtt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~v~~~~~~~~~~~l~~ia~tsl~sk~~~ 172 (562)
+||||||++||+++||+++.+++++|+||+.|++||++|++.+++.|+++++|++. ++.|.++|++|+
T Consensus 84 ~GDGTTtvvVLA~~Ll~ea~~lv~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~------~e~l~~vA~iS~------ 151 (547)
T 1kp8_A 84 AGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTVAVEELKALSVPCSD------SKAIAQVGTISA------ 151 (547)
T ss_dssp HSSCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCBCCCS------HHHHHHHHHHHT------
T ss_pred cCCCcchhHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhCcCCCC------HHHHHHHHHHhc------
Confidence 99999999999999999999999999999999999999999999999999999862 579999999984
Q ss_pred chhHHHHHHHHHHHHHhCCCCCCcceeEEEecCCCcccc-eeEEEEEEecccCCCcc----cCCcceecCceEEEeeccc
Q 008527 173 GEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTMRDS-FLVNGVAFKKTFSYAGF----EQQPKKFLNPKILLLNIEL 247 (562)
Q Consensus 173 ~~~~~ls~li~~Av~~v~~~~d~~~I~i~~i~gg~~~ds-~li~Giv~~~~~~~~~~----~~~~~~l~n~kIll~~~~L 247 (562)
++++++++++++|+.+++++ +.|+|. +|+++++| ++++|++|+++|.|||| ++|+++++||+||+++++|
T Consensus 152 ~~~~~i~~liadAv~~V~~d---g~I~Ve--~G~~~~ds~~lveG~~fdkg~~~p~~vt~~~~m~~~lenp~Ill~d~~I 226 (547)
T 1kp8_A 152 NSDETVGKLIAEAMDKVGKE---GVITVE--DGTGLQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKI 226 (547)
T ss_dssp TSCHHHHHHHHHHHHHHCTT---SEEEEE--CCSSSSCEEEEESCEEESCCBSSTTCCSBTTTTBEEEESCEEECEESEE
T ss_pred cchhHHHHHHHHHHHHhCcC---CcEEEE--eCCccccccEEEecEEEecCccccccccCcccCceEecCceEEEEcCcC
Confidence 46899999999999999865 445554 78899998 99999999999999998 3588899999999999975
Q ss_pred cccccccCceEEecCHHhHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcccHHHHHHHHhcCc-----------cccCC
Q 008527 248 ELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDI-----------FCAGR 316 (562)
Q Consensus 248 e~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lIi~~~~v~~~al~~l~~~~I-----------~~v~~ 316 (562)
+++++ +.++++++.+.|++|||++++|++.++++|.+++| ..|++
T Consensus 227 -------------s~~~~-----------l~~~le~i~~~g~~lvIi~~~I~~~Al~~L~~n~irg~~~v~aVk~~~~~~ 282 (547)
T 1kp8_A 227 -------------SNIRE-----------MLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGD 282 (547)
T ss_dssp -------------CCGGG-----------THHHHHHHHGGGCCEEEEESEECHHHHHHHHHHGGGTSSCEEEEECSSCHH
T ss_pred -------------CCHHH-----------HHHHHHHHHhcCCCEEEECCCcCHHHHHHHHhcccccceeEEEEecccccc
Confidence 45555 45788999999999999999999999999998665 44569
Q ss_pred CChHHHHHHHHHhCCeEecc-----cCCCCCCcccccceEEEEEECCeEEEEEEcCCCC---------------------
Q 008527 317 VAEEDLLRVAAATGGTVQTS-----VNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSG--------------------- 370 (562)
Q Consensus 317 v~~~~Le~Ia~~TGa~ii~s-----l~~l~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~--------------------- 370 (562)
+++++|+|||++|||+++++ +++++.+++|+|+.|++ +++++++|+||.++
T Consensus 283 ~rk~~le~ia~~tG~~ii~~~~g~~l~~~~~~~LG~a~~v~~---~~~~~~~i~g~~~~~~i~~r~~~i~~~~~~~~s~~ 359 (547)
T 1kp8_A 283 RRKAMLQDIATLTGGTVISEEIGMELEKATLEDLGQAKRVVI---NKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDY 359 (547)
T ss_dssp HHHHHHHHHHHHHTCCCEEGGGTCCSTTCCTTTSEEEEEEEE---CSSCEEEEEECCCHHHHHHHHHHHHHHHHSCCSHH
T ss_pred ccHHHHHHHHHHhCCeEecccccCCcccCCHHHCCceeEEEE---ccceEEEEcCCCCHHHHHHHHHHHHHHhhcccchh
Confidence 99999999999999999996 99999999999999976 57999999999764
Q ss_pred --------------ceEEEEeecCCHHHHHHHHHHHHHHHHHHHHHHhCCceeccCCccHHHHHHHHHHHhhhccchHHH
Q 008527 371 --------------RTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQF 436 (562)
Q Consensus 371 --------------~~~TIll~G~t~~~l~e~k~~i~dal~~~~~~l~~~~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~ 436 (562)
..|||+|||+|+.+++|.||+++||++++|+++++| +|||||++|++++.+|++++. .++++|+
T Consensus 360 ~~ekl~erlakl~~~~~tI~vrG~te~~l~E~kr~i~DAl~~~r~av~~g-iVpGGGa~e~~~s~~L~~~~~-~~g~~q~ 437 (547)
T 1kp8_A 360 DREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEG-VVAGGGVALIRVASKLADLRG-QNADQNV 437 (547)
T ss_dssp HHHHHHHHHHHHHHCEEEEECCCSSHHHHHHHHHHHHHHHHHHHHHHHHC-EEETTTHHHHHHHHHTTTCCC-SSHHHHH
T ss_pred hHHHHHHHHHHhcCCeEEEEEcCCcHhHHHHHHHHHHHHHHHHHHhccCC-EEeCCcHHHHHHHHHHHHHhc-cCchHHH
Confidence 689999999999999999999999999999999999 999999999999999999876 7889999
Q ss_pred HHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHhccCCCCCCCceeEecCCCCccccccCCcccchHHHHHHHHHHHHHH
Q 008527 437 FINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAA 516 (562)
Q Consensus 437 ~~~~~a~AL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a 516 (562)
++++|++||+.||++|++|||+|+.+++.+|++. + .++|||+.+|++.||++.|||||+.||+++|++|+|+|
T Consensus 438 ~i~~~a~ALe~ip~~la~NaG~d~~~vv~~l~~~------~-~~~G~d~~~g~~~dm~~~gI~Dp~~vk~~al~~A~~~A 510 (547)
T 1kp8_A 438 GIKVALRAMEAPLRQIVLNCGEEPSVVANTVKGG------D-GNYGYNAATEEYGNMIDMGILDPTKVTRSALQYAASVA 510 (547)
T ss_dssp HHHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHHS------C-TTEEEETTTTEEEETTTTTCEEEHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhc------C-CCEeEeCCCCccccchhcCceechHhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999863 2 67999999999999999999999999999999999999
Q ss_pred HHHHchhHhhcCCCcCC
Q 008527 517 CLILSVDETVKNPKVVC 533 (562)
Q Consensus 517 ~~iL~iD~iI~~~~~~~ 533 (562)
++||++|++|...|++.
T Consensus 511 ~~iL~id~iI~~~~~~~ 527 (547)
T 1kp8_A 511 GLMITTECMVTDLPKND 527 (547)
T ss_dssp HHHHTEEEEEEECCC--
T ss_pred HHHHhHhheeecCCccC
Confidence 99999999999877644
No 25
>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1
Probab=100.00 E-value=1.1e-96 Score=800.16 Aligned_cols=465 Identities=23% Similarity=0.345 Sum_probs=401.4
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhhccCCCCCceeeeCCCCCeEEecCHHHHhccccccCh----HHHHHHHHHHhcccc
Q 008527 17 DTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHP----AAKILVDIAKSQDSE 92 (562)
Q Consensus 17 ~~~~g~~~~~~n~~~~~~l~~iv~sslGP~G~~kmI~~~~g~~~iTnDG~tIl~~l~~~hP----~akll~~~~~~~~~~ 92 (562)
...+|.++|.+|+.||..|+++|+|||||+||+|||+++.|+++|||||+||+++|+++|| +|||++++|++||++
T Consensus 5 ~~~~g~~ar~~~i~~~~~la~~vkttLGPkG~~kmi~~~~g~~~iTnDG~tIlk~i~~~hp~en~~Akll~e~a~~qd~e 84 (545)
T 1iok_A 5 EVKFNSDARDRMLKGVNILADAVKVTLGPKGRNVVIDKSFGAPRITKDGVSVAKEIELSDKFENMGAQMVREVASRTNDE 84 (545)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHHHGGGCSTTCCEEEECCSSSSCEEECCHHHHHHHCCCSSHHHHHHHHHHHHHHHHGGGG
T ss_pred hhhccHHHHHHHHHHHHHHHHHHHhcCCCCCCeEEEECCCCCeEEeCCHHHHHHHhccCChhhHHHHHHHHHHHHhhccc
Confidence 4678999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred cCCchhHHHHHHHHHHHHHHHhHHCCCChhhHHHHHHHHHHHHHHHHHhhceeccCCChHHHHHHHHHHHHHhhccCccC
Q 008527 93 VGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIG 172 (562)
Q Consensus 93 ~GDGTtt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~v~~~~~~~~~~~l~~ia~tsl~sk~~~ 172 (562)
+||||||++||+++||+++.+++++|+||+.|++||++|++.+++.|+++++|++. ++.|.++|++++
T Consensus 85 ~GDGTTtvvVLA~~Ll~ea~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~------~e~l~~va~iS~------ 152 (545)
T 1iok_A 85 AGDGTTTATVLAQAIVREGLKAVAAGMNPMDLKRGIDVATAKVVEAIKSAARPVND------SSEVAQVGTISA------ 152 (545)
T ss_dssp CSTHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCBCCCS------TTTTTHHHHHTT------
T ss_pred cCCCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCC------HHHHHHHHHhhc------
Confidence 99999999999999999999999999999999999999999999999999999863 358999999884
Q ss_pred chhHHHHHHHHHHHHHhCCCCCCcceeEEEecCCCcccc-eeEEEEEEecccCCCcc----cCCcceecCceEEEeeccc
Q 008527 173 GEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTMRDS-FLVNGVAFKKTFSYAGF----EQQPKKFLNPKILLLNIEL 247 (562)
Q Consensus 173 ~~~~~ls~li~~Av~~v~~~~d~~~I~i~~i~gg~~~ds-~li~Giv~~~~~~~~~~----~~~~~~l~n~kIll~~~~L 247 (562)
++++++++++++|+.+++++ +.|+|. +|++++|| ++++|++|+++|.|||| ++|+++++||+|++++++|
T Consensus 153 ~~~~~i~~li~dAv~~V~~~---g~I~Ve--~G~~~~ds~~lveG~~~dkg~~~p~~vt~~~~m~~~~en~~Ill~d~~I 227 (545)
T 1iok_A 153 NGESFIGQQIAEAMQRVGNE---GVITVE--ENKGMETEVEVVEGMQFDRGYLSPYFVTNADKMIAELEDAYILLHEKKL 227 (545)
T ss_dssp TTCHHHHHHHHHHHHHHCTT---SCCCCE--ECSSSCCEEEEECCEECSCCCSCGGGCCCSSSSCEEEEEEEEEECSSCB
T ss_pred CCchhHHHHHHHHHHHhccC---CeEEEE--eCCccccceEEEecEEEecCccccccccCcccCceeecCCeEEEEcCCc
Confidence 46899999999999999865 446664 79999998 99999999999999998 3578889999999999986
Q ss_pred cccccccCceEEecCHHhHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcccHHHHHHHHhcCc-----------cccCC
Q 008527 248 ELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDI-----------FCAGR 316 (562)
Q Consensus 248 e~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lIi~~~~v~~~al~~l~~~~I-----------~~v~~ 316 (562)
+ ++++ +.++++++++.|++|||++++|++.++++|.+++| ..+++
T Consensus 228 ~-------------~~~~-----------l~~~le~i~~~g~~lvIi~~~I~~~Al~~L~~n~irg~~~v~aVk~~~~~~ 283 (545)
T 1iok_A 228 S-------------SLQP-----------MVPLLESVIQSQKPLLIVAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGD 283 (545)
T ss_dssp C-------------CCCC----------------------CCCCEEEESCBC-----------------CEEEECSCCTT
T ss_pred C-------------CHHH-----------HHHHHHHHHhcCCCEEEECCCcCHHHHHHHHHccccccceeEEEecchhhh
Confidence 3 3444 45778899999999999999999999999998765 45669
Q ss_pred CChHHHHHHHHHhCCeEecc-----cCCCCCCcccccceEEEEEECCeEEEEEEcCCCC---------------------
Q 008527 317 VAEEDLLRVAAATGGTVQTS-----VNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSG--------------------- 370 (562)
Q Consensus 317 v~~~~Le~Ia~~TGa~ii~s-----l~~l~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~--------------------- 370 (562)
+++++|+|||++|||+++++ +++++++++|+|+.|++ +++++++|+||.++
T Consensus 284 ~~~~~le~ia~~tGa~ii~~~~~~~l~~~~~~~LG~a~~v~~---~~~~~~~i~g~~~~~~i~~r~~~i~~~~~~~~s~~ 360 (545)
T 1iok_A 284 RRKAMLQDIAILTGGQVISEDLGMKLENVTIDMLGRAKKVSI---NKDNTTIVDGAGEKAEIEARVSQIRQQIEETTSDY 360 (545)
T ss_dssp HHHHHHHHHHHHHTC---------------CTTSEEEEEEEE---CSSCEEEESCCCCHHHHHHHHHHHHHHHTTCCCSS
T ss_pred ccHHHHHHHHHhcCCeeecccccCCcccCCHHHcCcCcEEEE---ecCEEEEEeCCCCHHHHHHHHHHHHHHHhccCchh
Confidence 99999999999999999996 99999999999999976 56999999998754
Q ss_pred --------------ceEEEEeecCCHHHHHHHHHHHHHHHHHHHHHHhCCceeccCCccHHHHHHHHHHHhhhccchHHH
Q 008527 371 --------------RTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQF 436 (562)
Q Consensus 371 --------------~~~TIll~G~t~~~l~e~k~~i~dal~~~~~~l~~~~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~ 436 (562)
..|||+|||+|+.+++|.||+++||++++|+++++| +|||||++|++++.+|++++. .++++|+
T Consensus 361 ~~ekl~erlakl~~~~~tI~lrG~te~~l~E~kr~i~DAl~~~r~av~~g-iVpGGGa~e~~~s~~L~~~~~-~~g~~q~ 438 (545)
T 1iok_A 361 DREKLQERVAKLAGGVAVIRVGGMTEIEVKERKDRVDDALNATRAAVQEG-IVVGGGVALVQGAKVLEGLSG-ANSDQDA 438 (545)
T ss_dssp HHHHHHHHHHTTSSCEEEEEECCSSHHHHHHHHHHHHHHHHHHHHHHHHC-EEETTTHHHHHHGGGGGSCCC-SSHHHHH
T ss_pred hHHHHHHHHHhccCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHhhcC-CCCCchHHHHHHHHHHHHHhc-cCchHHH
Confidence 689999999999999999999999999999999999 999999999999999999876 7889999
Q ss_pred HHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHhccCCCCCCCceeEecCCCCccccccCCcccchHHHHHHHHHHHHHH
Q 008527 437 FINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAA 516 (562)
Q Consensus 437 ~~~~~a~AL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a 516 (562)
++++|++||+.||++|++|||+|+.+++.+|++.| . .++|||..+|++.||++.|||||+.||+++|++|+|+|
T Consensus 439 ~i~~~a~ALe~ip~~La~NaG~d~~~vv~~l~~~~-~-----~~~G~d~~~g~~~dm~~~gI~dp~~vk~~al~~A~~~A 512 (545)
T 1iok_A 439 GIAIIRRALEAPMRQIAENAGVDGAVVAGKVRESS-D-----KAFGFNAQTEEYGDMFKFGVIDPAKVVRTALEDAASVA 512 (545)
T ss_dssp HHHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHSCC-S-----TTEEEETTTTEEEEHHHHTCEEEHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhc-C-----CCeeEeCCCCcccchHhcCcEEccHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999765 2 67999999999999999999999999999999999999
Q ss_pred HHHHchhHhhcCCCcCC
Q 008527 517 CLILSVDETVKNPKVVC 533 (562)
Q Consensus 517 ~~iL~iD~iI~~~~~~~ 533 (562)
++||++|++|...|.+.
T Consensus 513 ~~iL~id~iI~~~~~~~ 529 (545)
T 1iok_A 513 GLLITTEAMIAEKPEPK 529 (545)
T ss_dssp HHHHTEEEEEEECC---
T ss_pred HHHHhHHHhhccCCccC
Confidence 99999999999877644
No 26
>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A
Probab=100.00 E-value=2.3e-95 Score=787.08 Aligned_cols=465 Identities=25% Similarity=0.339 Sum_probs=352.9
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhhccCCCCCceeeeCCCCCeEEecCHHHHhccccccChH----HHHHHHHHHhcccc
Q 008527 17 DTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPA----AKILVDIAKSQDSE 92 (562)
Q Consensus 17 ~~~~g~~~~~~n~~~~~~l~~iv~sslGP~G~~kmI~~~~g~~~iTnDG~tIl~~l~~~hP~----akll~~~~~~~~~~ 92 (562)
...+|.++|.+|+.|++.|+++|+|||||+||+|||+++.|+|+|||||+|||++|+++||+ |||++++|++||++
T Consensus 4 ~~~~~~~ar~~~~~~~~~la~~vkttLGPkG~~kml~~~~G~~~ITnDG~TIlk~i~v~hp~~n~gAkll~e~a~~qd~e 83 (546)
T 3rtk_A 4 TIAYDEEARRGLERGLNALADAVKVTLGPKGRNVVLEKKWGAPTITNDGVSIAKEIELEDPYEKIGAELVKEVAKKTDDV 83 (546)
T ss_dssp ---------------------------------------------------------CCCHHHHHHHHHHHHHHTSCC--
T ss_pred eeeccHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEECCCCCeEEECcHHHHHHHccCCChhhhHHHHHHHHHHHhhhhh
Confidence 46789999999999999999999999999999999999999999999999999999999998 99999999999999
Q ss_pred cCCchhHHHHHHHHHHHHHHHhHHCCCChhhHHHHHHHHHHHHHHHHHhhceeccCCChHHHHHHHHHHHHHhhccCccC
Q 008527 93 VGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIG 172 (562)
Q Consensus 93 ~GDGTtt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~v~~~~~~~~~~~l~~ia~tsl~sk~~~ 172 (562)
+||||||++|||++||+++.+++++|+||+.|++||++|++.+++.|+++++|++. ++.|.++|++|++
T Consensus 84 ~GDGTTtvvVLAgeLL~ea~~li~~GihP~~I~~G~~~A~~~a~e~L~~~s~~v~~------~e~L~~vA~iS~~----- 152 (546)
T 3rtk_A 84 AGDGTTTATVLAQALVREGLRNVAAGANPLGLKRGIEKAVEKVTETLLKGAKEVET------KEQIAATAAISAG----- 152 (546)
T ss_dssp -----CHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHTCBCCCS------HHHHHHHHHHHHT-----
T ss_pred hCCCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCC------hHHHHhHeEEeCC-----
Confidence 99999999999999999999999999999999999999999999999999999872 5789999998853
Q ss_pred chhHHHHHHHHHHHHHhCCCCCCcceeEEEecCCCcccceeEEEEEEecccCCCcc----cCCcceecCceEEEeecccc
Q 008527 173 GEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGF----EQQPKKFLNPKILLLNIELE 248 (562)
Q Consensus 173 ~~~~~ls~li~~Av~~v~~~~d~~~I~i~~i~gg~~~ds~li~Giv~~~~~~~~~~----~~~~~~l~n~kIll~~~~Le 248 (562)
++++++++++|+.+++++ +.|.|.+.. +...||++++|++|+++|.|||| ++||++++||+|++++++|
T Consensus 153 --~~~i~~liadAv~~V~~d---gvI~Ve~~~-~~~~ds~lveGm~fdkg~~sp~~vt~~e~m~~~len~kIll~d~kI- 225 (546)
T 3rtk_A 153 --DQSIGDLIAEAMDKVGNE---GVITVEESN-TFGLQLELTEGMRFDKGYISGYFVTDPERQEAVLEDPYILLVSSKV- 225 (546)
T ss_dssp --CHHHHHHHHHHHHHSCTT---SEEEEECCS-SSSCEEEEECEEEESCCBSSGGGCSBTTTTBEEEESCEEEEBSSEE-
T ss_pred --chHHHHHHHHHHHHhccC---CceEEEecC-CcccceEEeeeEEEcCCccCcccccCcccCeeEecccEEEEECCcc-
Confidence 678999999999999876 445554322 34468999999999999999998 3789999999999999874
Q ss_pred ccccccCceEEecCHHhHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcccHHHHHHHHhcC---c---cc-----cCCC
Q 008527 249 LKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRD---I---FC-----AGRV 317 (562)
Q Consensus 249 ~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lIi~~~~v~~~al~~l~~~~---I---~~-----v~~v 317 (562)
+++++ +.++++++.+.|++|||++++|++.++++|..++ + .+ |++.
T Consensus 226 ------------s~~~~-----------l~~~le~I~~~g~~lvIi~~~I~~~Al~~L~~n~lrg~~~v~aVk~~~~~~~ 282 (546)
T 3rtk_A 226 ------------STVKD-----------LLPLLEKVIGAGKPLLIIAEDVEGEALSTLVVNKIRGTFKSVAVKAPGFGDR 282 (546)
T ss_dssp ------------CCSTT-----------THHHHHHHHTTTCCEEEEESEECHHHHHHHHHHHHHSSCCEEEEECSSCHHH
T ss_pred ------------CCHHH-----------HHHHHHHHHhcCCCEEEEcCCCCHHHHHHHHHhCCCCceEEEEecccccccc
Confidence 45555 4577899999999999999999999999998543 3 33 3455
Q ss_pred ChHHHHHHHHHhCCeEec-----ccCCCCCCcccccceEEEEEECCeEEEEEEcCCCCc---------------------
Q 008527 318 AEEDLLRVAAATGGTVQT-----SVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGR--------------------- 371 (562)
Q Consensus 318 ~~~~Le~Ia~~TGa~ii~-----sl~~l~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~~--------------------- 371 (562)
++++|+|||++|||++++ ++++++.+.||+|+.|+ ++++++++|+||.+++
T Consensus 283 rk~~le~ia~~tG~~ii~~~~~~~l~~~~~~~LG~a~~v~---i~~d~~~~i~g~~~~~~i~~r~~~i~~~~~~~~s~~~ 359 (546)
T 3rtk_A 283 RKAMLQDMAILTGGQVISEEVGLTLENADLSLLGKARKVV---VTKDETTIVEGAGDTDAIAGRVAQIRQEIENSDSDYD 359 (546)
T ss_dssp HHHHHHHHHHHHTCCCBCSSSSCCSTTCCTTTSEEEEEEE---ECSSCEEEEEECSCHHHHHHHHHHHHHHHHTCSCHHH
T ss_pred chhhHHHHHHHhCCEEeeccccCccccCCHhhCCeeEEEE---EcCCeEEEEcCCCCHHHHHHHHHHHHHHHhhccchhh
Confidence 689999999999999999 68999999999999997 4889999999987643
Q ss_pred --------------eEEEEeecCCHHHHHHHHHHHHHHHHHHHHHHhCCceeccCCccHHHHHHHHHHHhhhccchHHHH
Q 008527 372 --------------TATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFF 437 (562)
Q Consensus 372 --------------~~TIll~G~t~~~l~e~k~~i~dal~~~~~~l~~~~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~ 437 (562)
.|||+|||+|+.+++|.||+++|||+++|+++++| +|||||++|++++.+|++++ .++++|++
T Consensus 360 ~ekl~erlakl~g~~atI~vrG~te~~l~E~er~l~DAl~a~r~av~~g-iVpGGGa~e~~~s~~L~~~~--~~g~eq~~ 436 (546)
T 3rtk_A 360 REKLQERLAKLAGGVAVIKAGAATEVELKERKHRIEDAVRNAKAAVEEG-IVAGGGVTLLQAAPTLDELK--LEGDEATG 436 (546)
T ss_dssp HHHHHHHHHHHHHCEEEEECCCCSSTHHHHHHHHHHHHHHHHHHHHHHC-EEETTTHHHHTTGGGSTTSC--CCTTHHHH
T ss_pred HHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHhCC-cccCCcHHHHHHHHHHHHhc--cccHHHHH
Confidence 89999999999999999999999999999999999 99999999999999999987 78999999
Q ss_pred HHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHhccCCCCCCCceeEecCCCCccccccCCcccchHHHHHHHHHHHHHHH
Q 008527 438 INSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAAC 517 (562)
Q Consensus 438 ~~~~a~AL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~ 517 (562)
+++|++||+.||++|++|||+|+.+++.+|++. . ..+|||+.+|++.||++.|||||+.||+++|++|+|+|+
T Consensus 437 i~~~a~ALe~ip~~La~NaG~d~~~vv~~l~~~--~-----~~~G~d~~~g~~~Dm~~~gI~dp~~vk~~al~~A~e~A~ 509 (546)
T 3rtk_A 437 ANIVKVALEAPLKQIAFNSGLEPGVVAEKVRNL--P-----AGHGLNAQTGVYEDLLAAGVADPVKVTRSALQNAASIAG 509 (546)
T ss_dssp HHHHHHHTTHHHHHHHTTTTCCHHHHHHHHHHS--C-----TTEECCSSSCCCEETTTTTCEEEHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhh--c-----CCEeEcCCCCcEeeHHHcCCEecHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999874 2 448999999999999999999999999999999999999
Q ss_pred HHHchhHhhcCCCcCCCc
Q 008527 518 LILSVDETVKNPKVVCKQ 535 (562)
Q Consensus 518 ~iL~iD~iI~~~~~~~~~ 535 (562)
+|||+|++|...|.+.+.
T Consensus 510 ~iL~id~iI~~~~~~~~~ 527 (546)
T 3rtk_A 510 LFLTTEAVVADKPEKEKA 527 (546)
T ss_dssp HHHHCC------------
T ss_pred HHHHHHHHHhcCCCCCCC
Confidence 999999999998776553
No 27
>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A
Probab=100.00 E-value=6.5e-37 Score=285.80 Aligned_cols=173 Identities=26% Similarity=0.467 Sum_probs=150.2
Q ss_pred cccceeEEEEEEecccCCCcccCCcceecCceEEEeeccccccccccCceEEecCHHhHHHHHHHHHHHHHHHHHHHHHc
Q 008527 208 MRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNIELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQS 287 (562)
Q Consensus 208 ~~ds~li~Giv~~~~~~~~~~~~~~~~l~n~kIll~~~~Le~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~ 287 (562)
++||++++|++|++++.+++ ||++++||||++++++||++++++++++.++++++++++.++|++++++++++|++.
T Consensus 1 ~~dS~lv~Gvvl~k~~~~~~---mpk~i~nakI~ll~~~Le~~k~e~~~~v~i~~~~~~~~~~~~E~~~l~~~v~kI~~~ 77 (178)
T 1gml_A 1 MEDSCVLRGVMINKDVTHPR---MRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIHQLCEDIIQL 77 (178)
T ss_dssp --CCSEEEEEEESCCCSSTT---SCCEEESCCEEEESSCBSCC--------------CHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCcEEEEEEEEeccccCCC---CCcccccceEEEEecccCCccccCccEEEECCHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 36899999999999999865 689999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEcCcccHHHHHHHHhcCccccCCCChHHHHHHHHHhCCeEecccCCCCCCcccc-cceEEEEEECCeEEEEEEc
Q 008527 288 GAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAAATGGTVQTSVNNVVDEVLGT-CEHFEERQVGNERFNIFSG 366 (562)
Q Consensus 288 ~~~lIi~~~~v~~~al~~l~~~~I~~v~~v~~~~Le~Ia~~TGa~ii~sl~~l~~~~lG~-~~~v~~~~ig~~~~~~~~g 366 (562)
|++||+++++|+|++++||.++||++++++++++|+|||++|||++++++++++++.+|+ |+.|++.++|+++|++|+|
T Consensus 78 g~nVVl~~k~I~d~a~~~l~k~gI~~vr~v~~~dleria~atGa~iv~~~~~l~~~~LG~~~~~v~~~~ig~~~~~~~~g 157 (178)
T 1gml_A 78 KPDVVITEKGISDLAQHYLMRANVTAIRRVRKTDNNRIARACGARIVSRPEELREDDVGTGAGLLEIKKIGDEYFTFITD 157 (178)
T ss_dssp CCSEEEESSCBCHHHHHHHHHTTCEEECCCCHHHHHHHHHHHCCCEESCGGGCCGGGSBCCEEEEEEEEETTEEEEEEEE
T ss_pred CCcEEEECCcccHHHHHHHHHCCCEEEecCCHHHHHHHHHHhCCeEeCChhhCChhhhCCcccEEEEEEECCeEEEEEEC
Confidence 999999999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred CCCCceEEEEeecCCHH
Q 008527 367 CPSGRTATIVLRGGADQ 383 (562)
Q Consensus 367 ~~~~~~~TIll~G~t~~ 383 (562)
|++++.|||+|||++..
T Consensus 158 c~~~~~~TIllRG~~~~ 174 (178)
T 1gml_A 158 CKDPKACTILLRGASHH 174 (178)
T ss_dssp ESSTTSCEEEEEC----
T ss_pred CCCCCEEEEEEECCCcc
Confidence 99999999999999864
No 28
>1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP: c.8.5.2 PDB: 1asx_A
Probab=99.97 E-value=3.4e-32 Score=248.85 Aligned_cols=154 Identities=32% Similarity=0.566 Sum_probs=148.2
Q ss_pred EEEEEEecccCCCcccCCcceecCceEEEeeccccccccccCceEEecCHHhHHHHHHHHHHHHHHHHHHHHHcCCeEEE
Q 008527 214 VNGVAFKKTFSYAGFEQQPKKFLNPKILLLNIELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVL 293 (562)
Q Consensus 214 i~Giv~~~~~~~~~~~~~~~~l~n~kIll~~~~Le~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lIi 293 (562)
++|++|++++.+++ ||++++||||++++++||++++++++++.++++++++++.++|+++++.++++|++.|++||+
T Consensus 1 i~Gvv~~k~~~~~~---mpk~i~nakI~ll~~~Le~~k~e~~~~v~i~~~~~~~~~~~~E~~~l~~~v~kI~~~g~nVVl 77 (159)
T 1ass_A 1 MSGIVIDKEKVHSK---MPDVVKNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGANVVL 77 (159)
T ss_dssp CCCEEESCCCSCTT---SCSEEEEEEEEEESSCBSCCHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHHTTCSEEE
T ss_pred CceEEEecccCCCC---CCcCcCCccEEEEecCcCCcccccceeEEECCHHHHHHHHHHHHHHHHHHhhhhhhCCCeEEE
Confidence 47999999999875 689999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCcccHHHHHHHHhcCccccCCCChHHHHHHHHHhCCeEecccCCCCCCcccccceEEEEEECCeEEEEEEcCCCC
Q 008527 294 SRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSG 370 (562)
Q Consensus 294 ~~~~v~~~al~~l~~~~I~~v~~v~~~~Le~Ia~~TGa~ii~sl~~l~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~ 370 (562)
++++|+|++++||.++||++++++++++|+|||++|||++++++++++++.+|+|+.|++.++|+++|++|+||++.
T Consensus 78 ~~k~I~d~a~~~l~k~gI~~v~~v~~~dleria~atGa~iv~~~~~l~~~~LG~~~~v~e~~ig~~~~~~~~g~~~~ 154 (159)
T 1ass_A 78 CQKGIDDVAQHYLAKEGIYAVRRVKKSDMEKLAKATGAKIVTDLDDLTPSVLGEAETVEERKIGDDRMTFVMGCKNH 154 (159)
T ss_dssp ESSCBCHHHHHHHHHTTCEEECSCCHHHHHHHHHHHTCCCBSSTTSCCTTSCEEEEEEEEEEETTEEEEEEESCC--
T ss_pred ECCccCHHHHHHHHHCCCEEEccCCHHHHHHHHHHhCCeeeCccccCCcccCccceEEEEEEECCeEEEEEECCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999764
No 29
>3m6c_A 60 kDa chaperonin 1; chaperone, ATP-binding, nucleotide-binding; 2.20A {Mycobacterium tuberculosis}
Probab=99.43 E-value=2.9e-13 Score=123.60 Aligned_cols=147 Identities=22% Similarity=0.298 Sum_probs=113.5
Q ss_pred ceeEEEEEEecccCCCccc----CCcceecCceEEEeeccccccccccCceEEecCHHhHHHHHHHHHHHHHHHHHHHHH
Q 008527 211 SFLVNGVAFKKTFSYAGFE----QQPKKFLNPKILLLNIELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQ 286 (562)
Q Consensus 211 s~li~Giv~~~~~~~~~~~----~~~~~l~n~kIll~~~~Le~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~ 286 (562)
.++++||.|||+|.||||. +|..+++||+||+++.+| ++.++ +.++++++.+
T Consensus 2 levvEGmqfDrGYiSpyfvtd~~~m~~~le~p~ILitdkKI-------------s~i~~-----------ilP~LE~~~~ 57 (194)
T 3m6c_A 2 LEFTEGIGFDKGFLSAYFVTDFDNQQAVLEDALILLHQDKI-------------SSLPD-----------LLPLLEKVAG 57 (194)
T ss_dssp CCCCSSEEESCCBSCGGGCSBTTTTBEEEEEEEEEEBSSEE-------------CCHHH-----------HHHHHHHHHH
T ss_pred eEEEeeeEccCcccCceeeeccCCcEEEEecceEEEEcCcc-------------CCHHH-----------HHHHHHHHHH
Confidence 3678999999999999994 677899999999999874 56666 6788999999
Q ss_pred cCCeEEEEcCcccHHHHHHHH---hcCcc---c-----cCCCChHHHHHHHHHhCCeEecc-----cCCCCCCcccccce
Q 008527 287 SGAKVVLSRLAIGDLATQYFA---DRDIF---C-----AGRVAEEDLLRVAAATGGTVQTS-----VNNVVDEVLGTCEH 350 (562)
Q Consensus 287 ~~~~lIi~~~~v~~~al~~l~---~~~I~---~-----v~~v~~~~Le~Ia~~TGa~ii~s-----l~~l~~~~lG~~~~ 350 (562)
.+.+|+|.+..|+..|+..|. -+|.+ + |+..++..|++||.+||+++++. +++.+.++||+|++
T Consensus 58 ~~kpLlIIAedvegeaLatLvvNklrg~l~v~AVKAPgfGd~Rk~~L~DiAilTGg~visee~g~~Le~~~~~~LG~a~~ 137 (194)
T 3m6c_A 58 TGKPLLIVAEDVEGEALATLVVNAIRKTLKAVAVKGPYFGDRRKAFLEDLAVVTGGQVVNPDAGMVLREVGLEVLGSARR 137 (194)
T ss_dssp HTCCEEEEESEECHHHHHHHHHHHHHTSSCEEEEECSSCHHHHHHHHHHHHHHHTCCCBCGGGTCCGGGCCGGGCEEEEE
T ss_pred hCCCeEEEecccccchhhhhhhhhccceEEEEEEECCCCchhhhhhhHhHHHhcCCeEEeccCCcccccCCHHHCCCccE
Confidence 999999999999999888764 23322 2 46667889999999999999984 67888899999998
Q ss_pred EEEEEECCeEEEEEEcCCCCceEEEEeec-CCHHHHHHHHHHHHHHHH
Q 008527 351 FEERQVGNERFNIFSGCPSGRTATIVLRG-GADQFIEEAERSLHDAIM 397 (562)
Q Consensus 351 v~~~~ig~~~~~~~~g~~~~~~~TIll~G-~t~~~l~e~k~~i~dal~ 397 (562)
+... . --|.+++| .+...++++...++..+.
T Consensus 138 v~vt---k-------------d~T~iv~G~g~~~~I~~Rv~qIr~~ie 169 (194)
T 3m6c_A 138 VVVS---K-------------DDTVIVDGGGTAEAVANRAKHLRAEID 169 (194)
T ss_dssp EEEC---S-------------SCEEEEEECCCHHHHHHHHHHHHHHHH
T ss_pred EEEc---C-------------CceEEecCCCCHHHHHHHHHHHHHHHH
Confidence 8652 1 22444443 556666666555555443
No 30
>1srv_A Protein (groel (HSP60 class)); chaperone, cell division, ATP-binding, phosphorylation; 1.70A {Thermus thermophilus} SCOP: c.8.5.1
Probab=99.41 E-value=7.1e-13 Score=115.46 Aligned_cols=114 Identities=24% Similarity=0.324 Sum_probs=96.3
Q ss_pred EEEEecccCCCcc----cCCcceecCceEEEeeccccccccccCceEEecCHHhHHHHHHHHHHHHHHHHHHHHHcCCeE
Q 008527 216 GVAFKKTFSYAGF----EQQPKKFLNPKILLLNIELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKV 291 (562)
Q Consensus 216 Giv~~~~~~~~~~----~~~~~~l~n~kIll~~~~Le~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~l 291 (562)
|+.|||+|.|||| ++|...++||+||+++.+| ++.++ +.++++++.+.+.+|
T Consensus 1 GmqfDrGYlSpYfvtd~e~m~~~le~p~ILitdkKI-------------s~i~~-----------llP~LE~v~~~~~pL 56 (145)
T 1srv_A 1 GYQFDKGYISPYFVTNPETMEAVLEDAFILIVEKKV-------------SNVRE-----------LLPILEQVAQTGKPL 56 (145)
T ss_dssp CEEESCCBSCGGGCSBTTTTBEEEEEEEEEEESSEE-------------CCHHH-----------HHHHHHHHHTTTCCE
T ss_pred CccccCCccCceeecCccccEEEeeccEEEEecccc-------------cCHHH-----------HHHHHHHHHHHCCCE
Confidence 8999999999999 4677899999999999874 56666 678899999999999
Q ss_pred EEEcCcccHHHHHHHH---hcCcc---c-----cCCCChHHHHHHHHHhCCeEecc-----cCCCCCCcccccceEEE
Q 008527 292 VLSRLAIGDLATQYFA---DRDIF---C-----AGRVAEEDLLRVAAATGGTVQTS-----VNNVVDEVLGTCEHFEE 353 (562)
Q Consensus 292 Ii~~~~v~~~al~~l~---~~~I~---~-----v~~v~~~~Le~Ia~~TGa~ii~s-----l~~l~~~~lG~~~~v~~ 353 (562)
+|.+..|+..|+..|. -+|.+ + |+..++..|++||.+||+++++. +++.+.++||+|++++.
T Consensus 57 lIIAedvegeaLatLvvNklrg~l~v~AVKAPgfGd~Rk~~L~DiAilTGg~visee~g~~Le~~~~~~LG~a~~v~v 134 (145)
T 1srv_A 57 LIIAEDVEGEALATLVVNKLRGTLSVAAVKAPGFGDRRKEMLKDIAAVTGGTVISEELGFKLENATLSMLGRAERVRI 134 (145)
T ss_dssp EEEESEECHHHHHHHHHHHHTTSCCEEEEECCSSHHHHHHHHHHHHHHHTCCEECTTTTCCGGGCCGGGCEEEEEEEE
T ss_pred EEEecccchhhhhhhhhhhhcccceEEEEeCCCcchhhHHHHHHHHHHhCCEEEccccCCccccCCHhHCCccCEEEE
Confidence 9999999999998774 23333 2 46678999999999999999974 66778889999998875
No 31
>3osx_A 60 kDa chaperonin; alpha, beta, apical domain, chaperone; 1.55A {Xenorhabdus nematophila} SCOP: c.8.5.1 PDB: 1kid_A 1fy9_A 1la1_A 1fya_A 1jon_A 1dk7_A 1dkd_A
Probab=99.39 E-value=1.8e-12 Score=118.64 Aligned_cols=143 Identities=20% Similarity=0.289 Sum_probs=110.5
Q ss_pred EEEEEecccCCCccc----CCcceecCceEEEeeccccccccccCceEEecCHHhHHHHHHHHHHHHHHHHHHHHHcCCe
Q 008527 215 NGVAFKKTFSYAGFE----QQPKKFLNPKILLLNIELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAK 290 (562)
Q Consensus 215 ~Giv~~~~~~~~~~~----~~~~~l~n~kIll~~~~Le~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~ 290 (562)
+|+.||++|.||||. +|..+++||+||+++.+| ++.++ +.++++++.+.+.+
T Consensus 13 ~~~qfDrGYiSPYfvtd~e~m~~~le~p~ILitdkKI-------------s~i~~-----------ilP~LE~v~~~~rp 68 (201)
T 3osx_A 13 EGMQFDRGYLSPYFINKPESGSVELENPYILLVDKKI-------------SNIRE-----------LLPVLEGVAKASKP 68 (201)
T ss_dssp CCEEESCCBSCGGGCSBTTTTBEEEESCEEEEEEEEE-------------CCHHH-----------HHHHHHHHHTSSCC
T ss_pred cccEecCccCChheeecccCCEEEecCCeEEEEcCcc-------------CCHHH-----------HHHHHHHHHHhCCC
Confidence 599999999999993 677899999999999874 56666 67889999999999
Q ss_pred EEEEcCcccHHHHHHHH---hcC---ccc-----cCCCChHHHHHHHHHhCCeEecc-----cCCCCCCcccccceEEEE
Q 008527 291 VVLSRLAIGDLATQYFA---DRD---IFC-----AGRVAEEDLLRVAAATGGTVQTS-----VNNVVDEVLGTCEHFEER 354 (562)
Q Consensus 291 lIi~~~~v~~~al~~l~---~~~---I~~-----v~~v~~~~Le~Ia~~TGa~ii~s-----l~~l~~~~lG~~~~v~~~ 354 (562)
|+|.+..|+..|+..|. -+| +.+ |+..++..|++||.+||+++++. +++++.++||+|+++.+.
T Consensus 69 LlIIAEDvegEALatLvvNklrg~l~v~AVKAPgFGdrRk~~L~DIAilTGg~visee~g~~Le~~~~~~LG~a~~V~vt 148 (201)
T 3osx_A 69 LVIIAEDVEGEALATLVVNNMRGIVKVASVKAPGFGDRRKAMLQDIATLTNGTVISEEIGLELEKATLEDLGQAKRVVIN 148 (201)
T ss_dssp EEEEEEEECHHHHHHHHHHHHHTSCCEEEEECSSCHHHHHHHHHHHHHHHTCCCBCGGGTCCGGGCCGGGCEEEEEEEEC
T ss_pred eEEEeccccchhhhHHHHhhccceEEEEEEeCCCCccchhhhhHhHHHHhCCEEEecccCCccccCCHhhCCCccEEEEc
Confidence 99999999999888764 233 222 46667889999999999999984 677888899999988652
Q ss_pred EECCeEEEEEEcCCCCceEEEEeec-CCHHHHHHHHHHHHHHHH
Q 008527 355 QVGNERFNIFSGCPSGRTATIVLRG-GADQFIEEAERSLHDAIM 397 (562)
Q Consensus 355 ~ig~~~~~~~~g~~~~~~~TIll~G-~t~~~l~e~k~~i~dal~ 397 (562)
+ --|+++.| .+...++++...++..+.
T Consensus 149 k----------------d~TtIv~G~G~~~~I~~Rv~qIr~qie 176 (201)
T 3osx_A 149 K----------------DTTTIIDGVGEEGAIAARVTQIRQQIE 176 (201)
T ss_dssp S----------------SCEEEEEECCCHHHHHHHHHHHHHHHH
T ss_pred C----------------CceEEecCCCCHHHHHHHHHHHHHHHH
Confidence 1 22444443 556666666555555443
No 32
>1o13_A Probable NIFB protein; ribonuclease H-like motif fold, structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.83A {Thermotoga maritima} SCOP: c.55.5.1 PDB: 1t3v_A
Probab=44.86 E-value=33 Score=29.22 Aligned_cols=52 Identities=19% Similarity=0.150 Sum_probs=38.8
Q ss_pred HHHHHHHcCCeEEEEcCcccHHHHHHHHhcCccccCCCChHHHHHHHHHhCCe
Q 008527 280 KLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAAATGGT 332 (562)
Q Consensus 280 ~v~~i~~~~~~lIi~~~~v~~~al~~l~~~~I~~v~~v~~~~Le~Ia~~TGa~ 332 (562)
..+.|.+.++++||+. ++.+-+...|.++||-++.......-+-|.....+.
T Consensus 68 ~a~~L~~~gv~vVI~g-~IG~~a~~~L~~~GI~v~~~~~g~i~eal~~~~~G~ 119 (136)
T 1o13_A 68 VPNFVKEKGAELVIVR-GIGRRAIAAFEAMGVKVIKGASGTVEEVVNQYLSGQ 119 (136)
T ss_dssp HHHHHHHTTCSEEECS-CCCHHHHHHHHHTTCEEECSCCSBHHHHHHHHHTTC
T ss_pred HHHHHHHCCCCEEEEC-CCCHHHHHHHHHCCCEEEecCCCCHHHHHHHHHhCC
Confidence 4556677899999998 689999999999999999766544444455544443
No 33
>2yx6_A Hypothetical protein PH0822; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=40.78 E-value=40 Score=27.79 Aligned_cols=52 Identities=31% Similarity=0.309 Sum_probs=38.5
Q ss_pred HHHHHHHHcCCeEEEEcCcccHHHHHHHHhcCccccCCCChHHHHHHHHHhCC
Q 008527 279 DKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAAATGG 331 (562)
Q Consensus 279 ~~v~~i~~~~~~lIi~~~~v~~~al~~l~~~~I~~v~~v~~~~Le~Ia~~TGa 331 (562)
...+.|.+.++++|++. ++++-+...|.++||-++.......-+-|.....+
T Consensus 54 ~~~~~L~~~gv~~vi~~-~iG~~a~~~L~~~GI~v~~~~~~~v~eal~~~~~g 105 (121)
T 2yx6_A 54 DLPNFIKDHGAKIVLTY-GIGRRAIEYFNSLGISVVTGVYGRISDVIKAFIGG 105 (121)
T ss_dssp HHHHHHHHTTCCEEECS-BCCHHHHHHHHHTTCEEECSBCSBHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCEEEEC-CCCHhHHHHHHHCCCEEEECCCCCHHHHHHHHHcC
Confidence 44566677899999998 58999999999999999876554434444444444
No 34
>1eo1_A Hypothetical protein MTH1175; mixed A/B protein, mixed beta sheet, strand order 321456; NMR {Methanothermobacterthermautotrophicus} SCOP: c.55.5.1
Probab=39.34 E-value=54 Score=27.11 Aligned_cols=52 Identities=15% Similarity=0.097 Sum_probs=37.9
Q ss_pred HHHHHHHcCCeEEEEcCcccHHHHHHHHhcCccccCCCChHHHHHHHHHhCCe
Q 008527 280 KLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAAATGGT 332 (562)
Q Consensus 280 ~v~~i~~~~~~lIi~~~~v~~~al~~l~~~~I~~v~~v~~~~Le~Ia~~TGa~ 332 (562)
..+.+...++++|++. ++++-+...|.++||-++.......-+-|.....+.
T Consensus 57 ~~~~l~~~gv~~vi~~-~iG~~a~~~L~~~GI~v~~~~~~~i~eal~~~~~g~ 108 (124)
T 1eo1_A 57 TAQIIANNGVKAVIAS-SPGPNAFEVLNELGIKIYRATGTSVEENLKLFTEGN 108 (124)
T ss_dssp HHHHHHHTTCCEEEEC-CSSHHHHHHHHHHTCEEEECCSCCHHHHHHHHHTTC
T ss_pred HHHHHHHCCCCEEEEC-CcCHHHHHHHHHCCCEEEEcCCCCHHHHHHHHHhCC
Confidence 3455667899999998 489999999999999998765544344444444443
No 35
>2wfb_A Putative uncharacterized protein ORP; mixed molybdenum-copper sulphide cluster, alpha and beta protein, biosynthetic protein; 2.00A {Desulfovibrio gigas}
Probab=36.80 E-value=49 Score=27.17 Aligned_cols=50 Identities=20% Similarity=0.112 Sum_probs=36.9
Q ss_pred HHHHHHHcCCeEEEEcCcccHHHHHHHHhcCccccCCCCh-HHHHHHHHHhC
Q 008527 280 KLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAE-EDLLRVAAATG 330 (562)
Q Consensus 280 ~v~~i~~~~~~lIi~~~~v~~~al~~l~~~~I~~v~~v~~-~~Le~Ia~~TG 330 (562)
..+.|.+.++++|++. ++++-+...|.++||-++..... ..-+-|.....
T Consensus 59 ~~~~l~~~gv~~vi~~-~iG~~a~~~L~~~GI~v~~~~~g~~i~eal~~~~~ 109 (120)
T 2wfb_A 59 AAQVLAKSGAGVLLTG-YVGPKAFQALQAAGIKVGQDLEGLTVRQAVQRFLD 109 (120)
T ss_dssp HHHHHHHHTEEEEECS-CCCHHHHHHHHHTTCEEECCCTTSBHHHHHHHHHT
T ss_pred HHHHHHHCCCCEEEEC-CCCHhHHHHHHHCCCEEEEcCCCCcHHHHHHHHHc
Confidence 4566667899999998 58999999999999999876554 33333444433
No 36
>1rdu_A Conserved hypothetical protein; atnos, candid, structural genomics, joint center for structu genomics, JCSG, protein structure initiative; NMR {Thermotoga maritima} SCOP: c.55.5.1
Probab=27.03 E-value=51 Score=26.85 Aligned_cols=51 Identities=12% Similarity=0.106 Sum_probs=37.4
Q ss_pred HHHHHHHcCCeEEEEcCcccHHHHHHHHhcCccccCCCChHHHHHHHHHhCC
Q 008527 280 KLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAAATGG 331 (562)
Q Consensus 280 ~v~~i~~~~~~lIi~~~~v~~~al~~l~~~~I~~v~~v~~~~Le~Ia~~TGa 331 (562)
..+.+...++++|++. ++++-+...|.++||.++.......-+-|.....+
T Consensus 54 ~~~~l~~~gv~~vi~~-~iG~~a~~~L~~~GI~v~~~~~~~i~eal~~~~~g 104 (116)
T 1rdu_A 54 VVQSLVSKGVEYLIAS-NVGRNAFETLKAAGVKVYRFEGGTVQEAIDAFSEG 104 (116)
T ss_dssp HHHHHHTTTCCEEECS-SCCSSCHHHHHTTTCEEECCCSCBHHHHHHHHHTT
T ss_pred HHHHHHHcCCCEEEEC-CCCHhHHHHHHHCCCEEEECCCCCHHHHHHHHHhC
Confidence 3455667899999998 48999999999999999876554444445554444
No 37
>2re2_A Uncharacterized protein TA1041; dinitrogenase iron-molybdenum cofactor, structural genomics, center for structural genomics; HET: MSE; 1.30A {Thermoplasma acidophilum dsm 1728}
Probab=26.99 E-value=81 Score=26.69 Aligned_cols=51 Identities=12% Similarity=0.063 Sum_probs=36.2
Q ss_pred HHHHHHHHcCCeEEEEcCcccHHHHHHHHhcCccccCCCChHHHHHHHHHhCC
Q 008527 279 DKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAAATGG 331 (562)
Q Consensus 279 ~~v~~i~~~~~~lIi~~~~v~~~al~~l~~~~I~~v~~v~~~~Le~Ia~~TGa 331 (562)
...+.+...++++||+. ++.+-+...|.+ ||-++.......-+-|.....+
T Consensus 70 ~~~~~L~~~gv~~VI~g-~iG~~a~~~L~~-GI~v~~~~~~~veeal~~~~~G 120 (136)
T 2re2_A 70 FMLKSALDHGANALVLS-EIGSPGFNFIKN-KMDVYIVPEMPVADALKLILEG 120 (136)
T ss_dssp HHHHHHHHTTCSEEEES-CCBHHHHHHHTT-TSEEEECCSCBHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCEEEEC-CCCHhHHHHHHC-CCEEEEcCCCCHHHHHHHHHhC
Confidence 34556667899999998 589999999999 9999876553333334444433
No 38
>2pw9_A Putative formate dehydrogenase accessory protein; structural genomics, unknown function, PSI-2, protein structure initiative; 2.10A {Desulfotalea psychrophila LSV54} SCOP: c.97.1.5
Probab=25.26 E-value=37 Score=32.63 Aligned_cols=41 Identities=17% Similarity=0.209 Sum_probs=36.4
Q ss_pred HHHHHHHHHcCCeEEEEcCcccHHHHHHHHhcCccccCCCC
Q 008527 278 YDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVA 318 (562)
Q Consensus 278 ~~~v~~i~~~~~~lIi~~~~v~~~al~~l~~~~I~~v~~v~ 318 (562)
.++++|.+..|++++++...-..++.++..+.||+.++.++
T Consensus 205 ~EmV~Kaa~aGIpvlvS~SApTslAV~lA~~~giTLiGf~R 245 (268)
T 2pw9_A 205 SDMVLKCARIGIPIIMSRTSPSSLGLALAKRSGATLVAYSR 245 (268)
T ss_dssp HHHHHHHHHHTCCEEEESSCBCHHHHHHHHHHTCEEEEEEE
T ss_pred HHHHHHHHHcCCCEEEEcccccHHHHHHHHHcCCEEEEEec
Confidence 36789999999999999999999999999999999887665
No 39
>3psh_A Protein HI_1472; substrate binding protein, periplasmic binding protein, MOLY binding protein, metal transport; 1.50A {Haemophilus influenzae} PDB: 3psa_A
Probab=21.86 E-value=99 Score=29.94 Aligned_cols=52 Identities=10% Similarity=0.040 Sum_probs=37.6
Q ss_pred HHHHHHcCCeEEEEcCcccHHHHHHHHhcCccccCC--CC------------------------hHHHHHHHHHhCCe
Q 008527 281 LDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGR--VA------------------------EEDLLRVAAATGGT 332 (562)
Q Consensus 281 v~~i~~~~~~lIi~~~~v~~~al~~l~~~~I~~v~~--v~------------------------~~~Le~Ia~~TGa~ 332 (562)
+|+|.+++|+|||.....++...+.|.+.||.++.- -. .+.++.++.++|-.
T Consensus 77 ~E~i~~l~PDlIi~~~~~~~~~~~~L~~~Gipvv~~~~~~~~~~~~~~~~pt~~~~~~~~~~~~~~~i~~lg~~lg~e 154 (326)
T 3psh_A 77 IESLLALKPDVVFVTNYAPSEMIKQISDVNIPVVAISLRTGEVGEKGKLNPTLTDEDKAYNDGLKQGIELIAEVFEKK 154 (326)
T ss_dssp HHHHHHTCCSEEEEETTCCHHHHHHHHTTTCCEEEECSCCSCGGGTTCSSCCCTTHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHccCCCEEEEeCCCChHHHHHHHHcCCCEEEEeccccccccccccccccccccchhhhhHHHHHHHHHHHcCCH
Confidence 577888999999987655566677788888876521 11 35688899999854
No 40
>2wi8_A Iron-uptake system-binding protein; bacillibactin and enterobactin binding, triscatecholate BIND protein, iron transport; 1.55A {Bacillus subtilis} PDB: 2why_A 2xuz_A* 2xv1_A* 2phz_A
Probab=20.94 E-value=1.3e+02 Score=28.98 Aligned_cols=52 Identities=15% Similarity=0.206 Sum_probs=35.9
Q ss_pred HHHHHHcCCeEEEEcCcccHHHHHHHHhcCccccCCCC----hHHHHHHHHHhCCe
Q 008527 281 LDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVA----EEDLLRVAAATGGT 332 (562)
Q Consensus 281 v~~i~~~~~~lIi~~~~v~~~al~~l~~~~I~~v~~v~----~~~Le~Ia~~TGa~ 332 (562)
+|+|.+++|+|||.....++...+.|.+.|..++-... .+.++.+++++|-.
T Consensus 89 ~E~I~~l~PDLIi~~~~~~~~~~~~L~~~gp~v~~~~~~~~~~~~i~~lg~~lg~e 144 (311)
T 2wi8_A 89 IEKILEMKPDVILASTKFPEKTLQKISTAGTTIPVSHISSNWKENMMLLAQLTGKE 144 (311)
T ss_dssp HHHHHHHCCSEEEEETTSCHHHHHHHHTTSCEEEECCCGGGHHHHHHHHHHHHTCH
T ss_pred HHHHHhCCCCEEEEcCccCHHHHHHHHhhCCEEEeeCCCcCHHHHHHHHHHHhCCH
Confidence 56777889999998765566667778877755443222 35577888888853
Done!