BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 008528
         (562 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2NTY|A Chain A, Rop4-Gdp-Prone8
 pdb|2NTY|B Chain B, Rop4-Gdp-Prone8
 pdb|2WBL|A Chain A, Three-Dimensional Structure Of A Binary Rop-Prone Complex
 pdb|2WBL|B Chain B, Three-Dimensional Structure Of A Binary Rop-Prone Complex
          Length = 365

 Score =  567 bits (1462), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 278/354 (78%), Positives = 315/354 (88%), Gaps = 1/354 (0%)

Query: 115 DRQPSDMELMKERFAKLLLGEDMSGGGKGVSSALALSNAITNLAASIFGEQRKLEPMPPE 174
           +RQ +DME+MK+RFAKLLLGEDMSGGGKGVSSALALSNAITNLAASIFGEQ KL+PMP +
Sbjct: 5   ERQQADMEMMKDRFAKLLLGEDMSGGGKGVSSALALSNAITNLAASIFGEQTKLQPMPQD 64

Query: 175 RKARWRKEINWLLSVTDHIVEFVPSQQKSKEGVSMEIMVTRQRNDLHMDIPALRKLDAML 234
           R+ARW+KEI+WLLSVTDHIVEFVPSQQ SK+GV  EIMVTRQR DL M+IPALRKLDAML
Sbjct: 65  RQARWKKEIDWLLSVTDHIVEFVPSQQTSKDGVCTEIMVTRQRGDLLMNIPALRKLDAML 124

Query: 235 IESLDNFGYQNEFWYPSGKSDDSEKNVT-RHEDKWWIPTVKVPENGLSEEGRRWIQSQKE 293
           I++LDNF   NEFWY S  S++ ++    R  DKWW+P VKVP  GLSE  RR +  QK+
Sbjct: 125 IDTLDNFRGHNEFWYVSRDSEEGQQARNDRTNDKWWLPPVKVPPGGLSEPSRRMLYFQKD 184

Query: 294 SVNQVLKAAMAINAQVLSEMEIPESYIESLPKNGRASLGDSIYKSITVEHFDPEQFLATM 353
           SV QV KAAMAINAQVLSEMEIPESYI+SLPKNGRASLGDSIYKSIT E FDPEQFLA +
Sbjct: 185 SVTQVQKAAMAINAQVLSEMEIPESYIDSLPKNGRASLGDSIYKSITEEWFDPEQFLAML 244

Query: 354 DLSNEHAVLDLKNRIEASIVIWKRKMHHKDSKSSWGSAVSLEKRELFEERAETILLLLKQ 413
           D+S EH VLDLKNRIEAS+VIWKRK+H KD+KSSWGSAVSLEKRELFEERAETIL+LLKQ
Sbjct: 245 DMSTEHKVLDLKNRIEASVVIWKRKLHTKDTKSSWGSAVSLEKRELFEERAETILVLLKQ 304

Query: 414 RFPGISQSTLDISKIQYNRDVGQAILESYSRIIESLAHTVMSRIDDVLYADSLA 467
           +FPG+ QS+LDISKIQ+N+DVGQA+LESYSRI+ESLA+TVMSRI+DVLY D+LA
Sbjct: 305 KFPGLPQSSLDISKIQFNKDVGQAVLESYSRILESLAYTVMSRIEDVLYTDTLA 358


>pdb|2NTX|A Chain A, Prone8
 pdb|2NTX|B Chain B, Prone8
          Length = 365

 Score =  516 bits (1330), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 268/354 (75%), Positives = 303/354 (85%), Gaps = 1/354 (0%)

Query: 115 DRQPSDMELMKERFAKLLLGEDMSGGGKGVSSALALSNAITNLAASIFGEQRKLEPMPPE 174
           +RQ +D E  K+RFAKLLLGED SGGGKGVSSALALSNAITNLAASIFGEQ KL+P P +
Sbjct: 5   ERQQADXEXXKDRFAKLLLGEDXSGGGKGVSSALALSNAITNLAASIFGEQTKLQPXPQD 64

Query: 175 RKARWRKEINWLLSVTDHIVEFVPSQQKSKEGVSMEIMVTRQRNDLHMDIPALRKLDAML 234
           R+ARW+KEI+WLLSVTDHIVEFVPSQQ SK+GV  EI VTRQR DL  +IPALRKLDA L
Sbjct: 65  RQARWKKEIDWLLSVTDHIVEFVPSQQTSKDGVCTEIXVTRQRGDLLXNIPALRKLDAXL 124

Query: 235 IESLDNFGYQNEFWYPSGKSDDSEKNVT-RHEDKWWIPTVKVPENGLSEEGRRWIQSQKE 293
           I++LDNF   NEFWY S  S++ ++    R  DKWW+P VKVP  GLSE  RR +  QK+
Sbjct: 125 IDTLDNFRGHNEFWYVSRDSEEGQQARNDRTNDKWWLPPVKVPPGGLSEPSRRXLYFQKD 184

Query: 294 SVNQVLKAAMAINAQVLSEMEIPESYIESLPKNGRASLGDSIYKSITVEHFDPEQFLATM 353
           SV QV KAA AINAQVLSE EIPESYI+SLPKNGRASLGDSIYKSIT E FDPEQFLA +
Sbjct: 185 SVTQVQKAAXAINAQVLSEXEIPESYIDSLPKNGRASLGDSIYKSITEEWFDPEQFLAXL 244

Query: 354 DLSNEHAVLDLKNRIEASIVIWKRKMHHKDSKSSWGSAVSLEKRELFEERAETILLLLKQ 413
           D S EH VLDLKNRIEAS+VIWKRK+H KD+KSSWGSAVSLEKRELFEERAETIL+LLKQ
Sbjct: 245 DXSTEHKVLDLKNRIEASVVIWKRKLHTKDTKSSWGSAVSLEKRELFEERAETILVLLKQ 304

Query: 414 RFPGISQSTLDISKIQYNRDVGQAILESYSRIIESLAHTVMSRIDDVLYADSLA 467
           +FPG+ QS+LDISKIQ+N+DVGQA+LESYSRI+ESLA+TV SRI+DVLY D+LA
Sbjct: 305 KFPGLPQSSLDISKIQFNKDVGQAVLESYSRILESLAYTVXSRIEDVLYTDTLA 358


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.312    0.129    0.368 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,599,429
Number of Sequences: 62578
Number of extensions: 682368
Number of successful extensions: 1410
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1405
Number of HSP's gapped (non-prelim): 5
length of query: 562
length of database: 14,973,337
effective HSP length: 104
effective length of query: 458
effective length of database: 8,465,225
effective search space: 3877073050
effective search space used: 3877073050
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (25.4 bits)