BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008528
(562 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LV40|ROGF8_ARATH Rho guanine nucleotide exchange factor 8 OS=Arabidopsis thaliana
GN=ROPGEF8 PE=1 SV=1
Length = 523
Score = 603 bits (1555), Expect = e-171, Method: Compositional matrix adjust.
Identities = 320/475 (67%), Positives = 364/475 (76%), Gaps = 41/475 (8%)
Query: 107 PLPLPSPR-DRQPSDMELMKERFAKLLLGEDMSGGGKGVSSALALSNAITNLAASIFGEQ 165
PL P R +RQ +DME+MK+RFAKLLLGEDMSGGGKGVSSALALSNAITNLAASIFGEQ
Sbjct: 71 PLTRPGKRSERQQADMEMMKDRFAKLLLGEDMSGGGKGVSSALALSNAITNLAASIFGEQ 130
Query: 166 RKLEPMPPERKARWRKEINWLLSVTDHIVEFVPSQQKSKEGVSMEIMVTRQRNDLHMDIP 225
KL+PMP +R+ARW+KEI+WLLSVTDHIVEFVPSQQ SK+GV EIMVTRQR DL M+IP
Sbjct: 131 TKLQPMPQDRQARWKKEIDWLLSVTDHIVEFVPSQQTSKDGVCTEIMVTRQRGDLLMNIP 190
Query: 226 ALRKLDAMLIESLDNFGYQNEFWYPSGKSDDSEKNVT-RHEDKWWIPTVKVPENGLSEEG 284
ALRKLDAMLI++LDNF NEFWY S S++ ++ R DKWW+P VKVP GLSE
Sbjct: 191 ALRKLDAMLIDTLDNFRGHNEFWYVSRDSEEGQQARNDRTNDKWWLPPVKVPPGGLSEPS 250
Query: 285 RRWIQSQKESVNQVLKAAMAINAQVLSEMEIPESYIESLPKNGRASLGDSIYKSITVEHF 344
RR + QK+SV QV KAAMAINAQVLSEMEIPESYI+SLPKNGRASLGDSIYKSIT E F
Sbjct: 251 RRMLYFQKDSVTQVQKAAMAINAQVLSEMEIPESYIDSLPKNGRASLGDSIYKSITEEWF 310
Query: 345 DPEQFLATMDLSNEHAVLDLKNRIEASIVIWKRKMHHKDSKSSWGSAVSLEKRELFEERA 404
DPEQFLA +D+S EH VLDLKNRIEAS+VIWKRK+H KD+KSSWGSAVSLEKRELFEERA
Sbjct: 311 DPEQFLAMLDMSTEHKVLDLKNRIEASVVIWKRKLHTKDTKSSWGSAVSLEKRELFEERA 370
Query: 405 ETILLLLKQRFPGISQSTLDISKIQYNRDVGQAILESYSRIIESLAHTVMSRIDDVLYAD 464
ETIL+LLKQ+FPG+ QS+LDISKIQ+N+DVGQA+LESYSRI+ESLA+TVMSRI+DVLY D
Sbjct: 371 ETILVLLKQKFPGLPQSSLDISKIQFNKDVGQAVLESYSRILESLAYTVMSRIEDVLYTD 430
Query: 465 SLAQNK----EPVPDSPKLEGEDMSDT-------------PNSKTLSDFMGWDAEESDNN 507
+LA + E D + D P+SKTL DFMGW N
Sbjct: 431 TLALKQTLLAEETSDGGRTTETDSESAGSSNSGEEAEKHDPHSKTLLDFMGW-------N 483
Query: 508 DNLFSTDNTEKYVKSEHETTNVMSKHMLSSAPTKKFSYLEKLENLSGLRSPTARH 562
DN S+ +K KS + T KK SYLEKLENL+G RSP RH
Sbjct: 484 DN--SSKGGDKPTKSPNLT-------------PKKLSYLEKLENLNGFRSPKDRH 523
>sp|Q93ZY2|ROGF1_ARATH Rop guanine nucleotide exchange factor 1 OS=Arabidopsis thaliana
GN=ROPGEF1 PE=1 SV=2
Length = 548
Score = 401 bits (1031), Expect = e-111, Method: Compositional matrix adjust.
Identities = 209/405 (51%), Positives = 280/405 (69%), Gaps = 36/405 (8%)
Query: 95 LPSTPR---DRHEAPPLPLPSP---------RDRQP----SDMELMKERFAKLLLGEDMS 138
+PS+PR R P P+ P D+QP S++E+MKERFAKLLLGEDMS
Sbjct: 49 IPSSPRVVAGRGFYFPAPVMLPVIGGKDVVWDDKQPDNDLSEIEMMKERFAKLLLGEDMS 108
Query: 139 GGGKGVSSALALSNAITNLAASIFGEQRKLEPMPPERKARWRKEINWLLSVTDHIVEFVP 198
GGGKGV +ALA+SNAITNL+A++FGE +LEP+ P++KA WR+E+ WLL V+D IVE +P
Sbjct: 109 GGGKGVCTALAISNAITNLSATVFGELWRLEPLAPQKKAMWRRELEWLLCVSDSIVELIP 168
Query: 199 SQQKSKEGVSMEIMVTRQRNDLHMDIPALRKLDAMLIESLDNFGYQNEFWYPS-----GK 253
S Q+ G + EIM TR R+DL+ ++PAL+KLDAMLI+ LD F EFWY G
Sbjct: 169 SIQQFPGGGTYEIMETRPRSDLYANLPALKKLDAMLIDMLDAFS-DTEFWYTDRGIVLGD 227
Query: 254 SDDSEKN---VTRHEDKWWIPTVKVPENGLSEEGRRWIQSQKESVNQVLKAAMAINAQVL 310
D N R EDKWW+P KVP NGLSEE R+ +Q ++ NQ+LKAA+AIN+ VL
Sbjct: 228 CDKDSYNSPASVRQEDKWWLPCPKVPPNGLSEEARKKLQQCRDFANQILKAALAINSGVL 287
Query: 311 SEMEIPESYIESLPKNGRASLGDSIYKSITVEHFDPEQFLATMDLSNEHAVLDLKNRIEA 370
+EMEIP+ Y+E+LPK+G+ LG+ IY+ +T F PE L +DLS+EH L++ NRIEA
Sbjct: 288 AEMEIPDPYLETLPKSGKECLGEIIYQYLTANKFSPECLLDCLDLSSEHQTLEIANRIEA 347
Query: 371 SIVIWKRK---MHHKDSK---SSWGSAVSL-----EKRELFEERAETILLLLKQRFPGIS 419
++ +W++K H K +K SSWG V E+ + +RAET+L L+ RFPG+
Sbjct: 348 AVHVWRQKNGRRHKKQAKLKLSSWGGKVKGLVNDNERNDFLVQRAETLLQSLRIRFPGLP 407
Query: 420 QSTLDISKIQYNRDVGQAILESYSRIIESLAHTVMSRIDDVLYAD 464
Q+TLD++KIQYN+DVGQ+ILESYSR++ES+A + +RIDDVLY D
Sbjct: 408 QTTLDMNKIQYNKDVGQSILESYSRVMESMAFNITARIDDVLYVD 452
>sp|Q9LQ89|ROGF2_ARATH Rop guanine nucleotide exchange factor 2 OS=Arabidopsis thaliana
GN=ROPGEF2 PE=1 SV=2
Length = 485
Score = 367 bits (941), Expect = e-100, Method: Compositional matrix adjust.
Identities = 181/371 (48%), Positives = 259/371 (69%), Gaps = 20/371 (5%)
Query: 120 DMELMKERFAKLLLGEDMSGGGKGVSSALALSNAITNLAASIFGEQRKLEPMPPERKARW 179
++E MKERF+KLLLGEDMSG GKGV +A+ +SNAITNL A++FG+ +LEP+ E+K W
Sbjct: 116 ELETMKERFSKLLLGEDMSGSGKGVCTAVTISNAITNLYATVFGQNLRLEPLEIEQKTTW 175
Query: 180 RKEINWLLSVTDHIVEFVPSQQKSKEGVSMEIMVTRQRNDLHMDIPALRKLDAMLIESLD 239
++E+N LLSV D+I EF+P Q G ++E+M +R R D+++++PALRKLD+ML+E+LD
Sbjct: 176 KREMNCLLSVCDYIFEFIPKSQNLSNGATVEVMESRPRADIYINLPALRKLDSMLMEALD 235
Query: 240 NFGYQNEFWYP-----SGKSDDSEKN------VTRHEDKWWIPTVKVPENGLSEEGRRWI 288
+F + EFWY S KS S V R E+KWW+P VP GLSE+ R+ +
Sbjct: 236 SFQ-KTEFWYAEEGSLSMKSTRSATGSFRKVIVQRKEEKWWLPIPLVPLQGLSEKARKQL 294
Query: 289 QSQKESVNQVLKAAMAINAQVLSEMEIPESYIESLPKNGRASLGDSIYKSITVE-HFDPE 347
+S++ES NQ+ KAAMAIN+ +L EM+IP+SY+ +LPK+G+AS GD+IY+ +T F PE
Sbjct: 295 KSKRESTNQIHKAAMAINSSILGEMDIPDSYMATLPKSGKASTGDAIYRHMTSSGRFSPE 354
Query: 348 QFLATMDLSNEHAVLDLKNRIEASIVIWKRKMHHKDSKSSWGSAVSL-------EKRELF 400
+ L + + +EH L L +R+EAS+ W+RK +SKSSW L +K +
Sbjct: 355 KLLDRLKIVSEHEALQLADRVEASMYTWRRKACLNNSKSSWNMVKDLMSITERSDKNYVL 414
Query: 401 EERAETILLLLKQRFPGISQSTLDISKIQYNRDVGQAILESYSRIIESLAHTVMSRIDDV 460
ERAE++L LKQR+P +SQ++LDI KI N+DVG+A+LESYSR++E LA +++ IDDV
Sbjct: 415 AERAESLLFCLKQRYPELSQTSLDICKIHCNKDVGKAVLESYSRVLEGLAFNIVAWIDDV 474
Query: 461 LYADSLAQNKE 471
LY D + +E
Sbjct: 475 LYVDKTMRGEE 485
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.129 0.368
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 210,234,070
Number of Sequences: 539616
Number of extensions: 9129901
Number of successful extensions: 21692
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 21670
Number of HSP's gapped (non-prelim): 37
length of query: 562
length of database: 191,569,459
effective HSP length: 123
effective length of query: 439
effective length of database: 125,196,691
effective search space: 54961347349
effective search space used: 54961347349
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 64 (29.3 bits)